BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] (321 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040386|gb|ACT57182.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 321 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/321 (100%), Positives = 321/321 (100%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV Sbjct: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN Sbjct: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA Sbjct: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT Sbjct: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP Sbjct: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 Query: 301 FVAKDFSAVITGCLDYGEEKI 321 FVAKDFSAVITGCLDYGEEKI Sbjct: 301 FVAKDFSAVITGCLDYGEEKI 321 >gi|315121874|ref|YP_004062363.1| cell division protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495276|gb|ADR51875.1| cell division protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 315 Score = 521 bits (1342), Expect = e-146, Method: Compositional matrix adjust. Identities = 254/314 (80%), Positives = 280/314 (89%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 S+S SWI+K KGFASTSLKLKEGI +ISS+RLDD VR+ELEDLLIR+DIG+ AQ+IV Sbjct: 2 SKSFSWIQKKAKGFASTSLKLKEGIAAVISSKRLDDSVRDELEDLLIRADIGLEAAQEIV 61 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 +L+ KRY KDVS+Q VL DVSE I+K+LMP+SK F+ DFSHRPHVILVVGVNG GKTT Sbjct: 62 GDLVAKRYNKDVSIQCVLQDVSEKIYKILMPISKSFDLDFSHRPHVILVVGVNGAGKTTA 121 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKLSKKMSD+GLK+MLAAGDTFRSAA+DQLKIWADRTS+DFV SEIGSDAAALAYEAF+ Sbjct: 122 IGKLSKKMSDSGLKIMLAAGDTFRSAAVDQLKIWADRTSSDFVGSEIGSDAAALAYEAFR 181 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 QAQAK VDVLIIDTAGRLHNNS LMAGIGKMIRVLKRLDP APHSVLQVLDAT GQNALR Sbjct: 182 QAQAKNVDVLIIDTAGRLHNNSALMAGIGKMIRVLKRLDPDAPHSVLQVLDATVGQNALR 241 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 QVE+F +VAGTTGLIMTK+DGTARGG L+ I + HKIPVYFLG GEGINDLEPFVAKDFS Sbjct: 242 QVELFQSVAGTTGLIMTKLDGTARGGILVSIAIKHKIPVYFLGTGEGINDLEPFVAKDFS 301 Query: 308 AVITGCLDYGEEKI 321 ITG DY E+KI Sbjct: 302 TAITGYFDYNEKKI 315 >gi|86359533|ref|YP_471425.1| cell division protein [Rhizobium etli CFN 42] gi|86283635|gb|ABC92698.1| cell division protein [Rhizobium etli CFN 42] Length = 522 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 185/313 (59%), Positives = 242/313 (77%), Gaps = 1/313 (0%) Query: 1 MSNQKVASES-LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59 + Q +A + LSW ++L G A TS +L IT + + R+LDD ++LEDLLI++D+G Sbjct: 207 IEPQPIAPQPKLSWFQRLRNGLARTSSQLTNQITALFTKRKLDDETLQDLEDLLIQADLG 266 Query: 60 VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 V A ++ + L ++RY KDV+ + V ++ I K+L P++KP D SH+PHVILVVGV Sbjct: 267 VETALRVTDTLASERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGV 326 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NG GKTT IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT+++FV +++G+DAA Sbjct: 327 NGTGKTTTIGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTNSEFVGTKLGADAA 386 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 LAY+AF+QA+AKK DVLI+DTAGRL N + LMA + K++RVL RLDP APH+VLQ LDA Sbjct: 387 GLAYDAFEQAKAKKCDVLIVDTAGRLQNKAELMAELEKIVRVLGRLDPDAPHTVLQTLDA 446 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNAL QVE+F VAG GLIMTK+DGTARGG L+ I HK+PVYF+GVGE ++DLE Sbjct: 447 TTGQNALSQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEAVDDLE 506 Query: 300 PFVAKDFSAVITG 312 PF A+DF+ I G Sbjct: 507 PFEAEDFARAIAG 519 >gi|241206753|ref|YP_002977849.1| signal recognition particle-docking protein FtsY [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860643|gb|ACS58310.1| signal recognition particle-docking protein FtsY [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 533 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/307 (59%), Positives = 238/307 (77%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 V LSW ++L G A TS +L IT + + R+LDD ++LEDLLI++D+GV A + Sbjct: 224 VLQPKLSWFQRLRNGLARTSSQLTGQITALFTKRKLDDETLQDLEDLLIQADLGVETAMR 283 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 + + L ++RY KDV+ + V ++ I K+L P++KP D SH+PHVILVVGVNG GKT Sbjct: 284 VTDTLASERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGVNGTGKT 343 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWADRT+++F+ +++G+DAA LAY+A Sbjct: 344 TTIGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWADRTNSEFIGTKLGADAAGLAYDA 403 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 F+QA+AKK DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNA Sbjct: 404 FEQAKAKKCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNA 463 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QVE+F VAG GLIMTK+DGTARGG L+ I HK+PVYF+GVGEG+ DLEPF A+D Sbjct: 464 LSQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVEDLEPFEAED 523 Query: 306 FSAVITG 312 F+ I G Sbjct: 524 FAHAIAG 530 >gi|190893800|ref|YP_001980342.1| cell division protein [Rhizobium etli CIAT 652] gi|190699079|gb|ACE93164.1| cell division protein [Rhizobium etli CIAT 652] Length = 520 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/310 (59%), Positives = 242/310 (78%), Gaps = 1/310 (0%) Query: 4 QKVASES-LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62 Q +A + LSW ++L G A TS +L IT + + R+LDD ++LEDLLI++D+GV Sbjct: 208 QPIAPQPKLSWFQRLRNGLARTSSQLTGQITALFTKRKLDDETLQDLEDLLIQADLGVET 267 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 A ++ + L ++RY KDV+ + V ++ I K+L P++KP D SH+PHVILVVGVNG Sbjct: 268 ALRVTDTLASERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGVNGT 327 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+ K+S AGLKVM+AAGDTFR+AAI+QLKIWA+RT+++FV +++G+DAA LA Sbjct: 328 GKTTTIGKLAAKLSGAGLKVMVAAGDTFRAAAIEQLKIWAERTNSEFVGTKLGADAAGLA 387 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+AF+QA+AKK DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTG Sbjct: 388 YDAFEQAKAKKCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTG 447 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL QVE+F VAG GLIMTK+DGTARGG L+ I HK+PVYF+GVGEG++DLEPF Sbjct: 448 QNALSQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVDDLEPFE 507 Query: 303 AKDFSAVITG 312 A+DF+ I G Sbjct: 508 AEDFAHAIAG 517 >gi|218661335|ref|ZP_03517265.1| cell division protein [Rhizobium etli IE4771] Length = 335 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/305 (60%), Positives = 241/305 (79%), Gaps = 1/305 (0%) Query: 4 QKVASES-LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62 Q +A ++ LSW ++L G A TSL+L IT + + R+LDD ++LEDLLI++D+GV Sbjct: 31 QPIAPQAKLSWFQRLRNGLARTSLQLTNQITALFTKRKLDDETLQDLEDLLIQADLGVET 90 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 A ++ + L ++RY KDV+ + V ++ I K+L P++KP D SH+PHVILVVGVNG Sbjct: 91 ALRVTDTLASERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGVNGT 150 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT ++FV +++G+DAA LA Sbjct: 151 GKTTTIGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTKSEFVGTKLGADAAGLA 210 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+AF+QA+AKK DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTG Sbjct: 211 YDAFEQAKAKKCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTG 270 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL QVE+F VAG GLIMTK+DGTARGG L+ I HK+PVYF+GVGEG++DLEPF Sbjct: 271 QNALSQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVDDLEPFE 330 Query: 303 AKDFS 307 A+DF+ Sbjct: 331 AEDFA 335 >gi|209551317|ref|YP_002283234.1| signal recognition particle-docking protein FtsY [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537073|gb|ACI57008.1| signal recognition particle-docking protein FtsY [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 528 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 182/307 (59%), Positives = 238/307 (77%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 V LSW ++L G A TS +L IT + + R+LDD ++LEDLLI++D+GV A + Sbjct: 219 VPQPKLSWFQRLRNGLARTSSQLTGQITALFTKRKLDDETLQDLEDLLIQADLGVETALR 278 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 + + L ++RY KDV+ + V ++ I K+L P++KP D SH+PHVILVVGVNG GKT Sbjct: 279 VTDTLASERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGVNGTGKT 338 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT+++F+ +++G+DAA LAY+A Sbjct: 339 TTIGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTNSEFIGTKLGADAAGLAYDA 398 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 F+QA+A+K DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNA Sbjct: 399 FEQAKARKCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNA 458 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QVE+F VAG GLIMTK+DGTARGG L+ I HK+PVYF+GVGEG+ DLEPF A+D Sbjct: 459 LSQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVEDLEPFEAED 518 Query: 306 FSAVITG 312 F+ I G Sbjct: 519 FAHAIAG 525 >gi|116254270|ref|YP_770108.1| cell division protein [Rhizobium leguminosarum bv. viciae 3841] gi|115258918|emb|CAK10027.1| putative SRP receptor [Rhizobium leguminosarum bv. viciae 3841] Length = 531 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 183/307 (59%), Positives = 237/307 (77%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 V LSW ++L G A TS +L IT + + R+LDD ++LEDLLI++D+GV A + Sbjct: 222 VLQPKLSWFQRLRNGLARTSSQLTGQITALFTKRKLDDETLQDLEDLLIQADLGVETAMR 281 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 + + L ++RY KDV+ + V ++ I K+L P+++P D SH+PHVILVVGVNG GKT Sbjct: 282 VTDTLASERYGKDVTGEDVSRIMASEIAKVLKPVARPLQLDLSHKPHVILVVGVNGTGKT 341 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWADRT ++F+ +++G+DAA LAY+A Sbjct: 342 TTIGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWADRTKSEFIGTKLGADAAGLAYDA 401 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 F+QA+AKK DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNA Sbjct: 402 FEQAKAKKCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNA 461 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QVE+F VAG GLIMTK+DGTARGG L+ I HK+PVYF+GVGEG+ DLEPF A+D Sbjct: 462 LSQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVEDLEPFEAED 521 Query: 306 FSAVITG 312 F+ I G Sbjct: 522 FAHAIAG 528 >gi|327190191|gb|EGE57296.1| cell division protein [Rhizobium etli CNPAF512] Length = 524 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 184/313 (58%), Positives = 242/313 (77%), Gaps = 1/313 (0%) Query: 1 MSNQKVASES-LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59 + Q +A + LSW ++L G A TS +L IT + + R+LDD ++LEDLLI++D+G Sbjct: 209 VEPQPIAPQPKLSWFQRLRNGLARTSSQLTNQITALFTKRKLDDETLQDLEDLLIQADLG 268 Query: 60 VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 V A ++ + L ++RY KDV+ + V ++ I K+L P++K D SH+PHVILVVGV Sbjct: 269 VETALRVTDTLASERYGKDVTGEDVSRIMASEIAKVLKPVAKSLQLDLSHKPHVILVVGV 328 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NG GKTT IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT+++FV +++G+DAA Sbjct: 329 NGTGKTTTIGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTNSEFVGTKLGADAA 388 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 LAY+AF+QA+AKK DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDA Sbjct: 389 GLAYDAFEQAKAKKCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDA 448 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNAL QVE+F VAG GLIMTK+DGTARGG L+ I HK+PVYF+GVGEG++DLE Sbjct: 449 TTGQNALSQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVDDLE 508 Query: 300 PFVAKDFSAVITG 312 PF A+DF+ I G Sbjct: 509 PFEAEDFAHAIAG 521 >gi|325294064|ref|YP_004279928.1| cell division particle [Agrobacterium sp. H13-3] gi|325061917|gb|ADY65608.1| cell division particle [Agrobacterium sp. H13-3] Length = 476 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 182/303 (60%), Positives = 236/303 (77%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW ++L G A TS +L I+ + + R+LD+ +ELEDLLI+SD+GV A +I L Sbjct: 174 LSWFQRLRAGLARTSSQLTTQISALFTKRKLDEDTLDELEDLLIQSDLGVETAMRITGAL 233 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++RY KDVS + V ++ I K+L P++KP D SH+PHVILVVGVNG GKTT IGK Sbjct: 234 SSERYGKDVSGEDVARIMAGEITKVLKPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 293 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K+S +GLKVMLAAGDTFR+AAI+QLKIWADRT + F+ +++G+DA+ LAY+A++QA+ Sbjct: 294 LASKLSGSGLKVMLAAGDTFRAAAIEQLKIWADRTGSQFIGTKLGADASGLAYDAYEQAR 353 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+K DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNAL QVE Sbjct: 354 AQKSDVLIIDTAGRLQNKTELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNALNQVE 413 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F VAG +GLIMTK+DGTARGG L+ I HK+PVYF+GVGEG++DLEPF A+DF+ I Sbjct: 414 IFRNVAGVSGLIMTKLDGTARGGILVAIAAKHKLPVYFIGVGEGVDDLEPFEAEDFAKAI 473 Query: 311 TGC 313 G Sbjct: 474 AGV 476 >gi|227823743|ref|YP_002827716.1| signal recognition particle-docking protein FtsY [Sinorhizobium fredii NGR234] gi|227342745|gb|ACP26963.1| signal recognition particle-docking protein FtsY [Sinorhizobium fredii NGR234] Length = 532 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 184/303 (60%), Positives = 234/303 (77%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW ++L G A TS +L I + + R+LD+ E+LEDLLI++D+GV A +I + L Sbjct: 227 LSWYQRLRHGLARTSSQLTGQIASLFTKRKLDEATLEDLEDLLIQADLGVETAMRITDTL 286 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++RY KDV+ + V ++ I K+L P+++P D S +PHVILVVGVNG GKTT IGK Sbjct: 287 ASERYGKDVTGEDVSRIMAGEIAKVLAPVARPLELDLSQKPHVILVVGVNGTGKTTTIGK 346 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT +D V S++G+DAA LAYEAF+ A+ Sbjct: 347 LAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTKSDIVASKLGADAAGLAYEAFQLAR 406 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 KK DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNAL+QVE Sbjct: 407 EKKSDVLIIDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNALQQVE 466 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F VAG +GLIMTK+DGTARGG L+ I HK+PVYF+GVGEGI+DLEPF AKDF+ I Sbjct: 467 IFRNVAGVSGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGIDDLEPFEAKDFAEAI 526 Query: 311 TGC 313 G Sbjct: 527 AGV 529 >gi|15889947|ref|NP_355628.1| cell division particle [Agrobacterium tumefaciens str. C58] gi|15157906|gb|AAK88413.1| cell division particle [Agrobacterium tumefaciens str. C58] Length = 478 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 181/303 (59%), Positives = 236/303 (77%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L+W ++L G A TS +L I+ + + R+LD+ +ELEDLLI+SD+GV A +I L Sbjct: 176 LTWFQRLRAGLARTSSQLTTQISALFTKRKLDEDTLDELEDLLIQSDLGVETAMRITGAL 235 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++RY KDVS + V ++ I K+L P++KP D SH+PHVILVVGVNG GKTT IGK Sbjct: 236 SSERYGKDVSGEDVARIMAGEITKVLKPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 295 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K+S +GLKVMLAAGDTFR+AAI+QLKIWADRT ++F+ +++G+DAA LAY+A++QA+ Sbjct: 296 LAAKLSGSGLKVMLAAGDTFRAAAIEQLKIWADRTGSEFIGTKLGADAAGLAYDAYEQAR 355 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+K DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNA+ QVE Sbjct: 356 AQKSDVLIIDTAGRLQNKTELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNAMNQVE 415 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F VAG +GLIMTK+DGTARGG L+ I HK+PVYF+GVGEG+ DLEPF A+DF+ I Sbjct: 416 IFRNVAGVSGLIMTKLDGTARGGILVAIAAKHKLPVYFIGVGEGVEDLEPFEAEDFAKAI 475 Query: 311 TGC 313 G Sbjct: 476 AGV 478 >gi|15966990|ref|NP_387343.1| putative cell division protein [Sinorhizobium meliloti 1021] gi|307302458|ref|ZP_07582215.1| signal recognition particle-docking protein FtsY [Sinorhizobium meliloti BL225C] gi|307316212|ref|ZP_07595656.1| signal recognition particle-docking protein FtsY [Sinorhizobium meliloti AK83] gi|15076263|emb|CAC47816.1| Putative cell division protein [Sinorhizobium meliloti 1021] gi|306898052|gb|EFN28794.1| signal recognition particle-docking protein FtsY [Sinorhizobium meliloti AK83] gi|306903128|gb|EFN33718.1| signal recognition particle-docking protein FtsY [Sinorhizobium meliloti BL225C] Length = 548 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 181/303 (59%), Positives = 236/303 (77%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L+W ++L G A TS +L I + + R+LD+ ++LEDLLI++D+GV A +I + L Sbjct: 243 LNWYQRLRLGLARTSSQLTGQIASLFTKRKLDEATLQDLEDLLIQADLGVETAMRITDTL 302 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++RY KDVS + V ++ I K+L P+++P D SH+PHVILVVGVNG GKTT IGK Sbjct: 303 ASERYGKDVSGEDVSRIMAGEITKVLAPVARPLELDLSHKPHVILVVGVNGTGKTTTIGK 362 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT ++ V S++G+DAA LAYEAF++A+ Sbjct: 363 LAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTKSEIVSSKLGADAAGLAYEAFQRAR 422 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 +K DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNAL+QVE Sbjct: 423 EQKADVLIIDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNALQQVE 482 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F VAG +GLIMTK+DGTARGG L+ I HK+PVYF+GVGEGI+DLEPF AK+F+ I Sbjct: 483 IFRNVAGVSGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGIDDLEPFEAKEFAEAI 542 Query: 311 TGC 313 G Sbjct: 543 AGV 545 >gi|150398285|ref|YP_001328752.1| signal recognition particle-docking protein FtsY [Sinorhizobium medicae WSM419] gi|150029800|gb|ABR61917.1| signal recognition particle-docking protein FtsY [Sinorhizobium medicae WSM419] Length = 520 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 181/308 (58%), Positives = 237/308 (76%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 A L+W ++L G A TS +L I + + R+LD+ ++LEDLLI++D+GV A + Sbjct: 210 AAQPKLNWYQRLRLGLARTSSQLTGQIASLFTKRKLDEATLQDLEDLLIQADLGVETAMR 269 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 I + L ++RY KDVS + V ++ I K+L P++KP D +H+PHVILVVGVNG GKT Sbjct: 270 ITDALASERYGKDVSGEDVSRIMAGEITKVLAPVAKPLELDLNHKPHVILVVGVNGTGKT 329 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+ K+S AGLKVM+AAGDTFR+AAI+QLKIWA+RT ++ V S++G+DAA LAYEA Sbjct: 330 TTIGKLAAKLSGAGLKVMMAAGDTFRAAAIEQLKIWAERTRSEIVSSKLGADAAGLAYEA 389 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 F++A+ +K DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNA Sbjct: 390 FQRAREQKADVLIIDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNA 449 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L+QVE+F VAG +GLIMTK+DGTARGG L+ I HK+PVYF+GVGEG++DLEPF AKD Sbjct: 450 LQQVEIFRNVAGVSGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVDDLEPFEAKD 509 Query: 306 FSAVITGC 313 F+ I G Sbjct: 510 FAEAIAGV 517 >gi|222087518|ref|YP_002546055.1| cell division protein [Agrobacterium radiobacter K84] gi|221724966|gb|ACM28122.1| cell division protein [Agrobacterium radiobacter K84] Length = 505 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 178/305 (58%), Positives = 237/305 (77%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 + LSW ++L G A TS +L I + + R+LDD ++LEDLLI++D+GV A ++ + Sbjct: 195 QKLSWFQRLRAGLARTSSQLTGQIAALFTKRKLDDQTLQDLEDLLIQADLGVETAMRVTD 254 Query: 69 ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L ++RY KDV+ + V +++ I K+L P++KP D SH+PHVIL+VGVNG GKTT I Sbjct: 255 TLASERYGKDVTGEDVSRIMAQEIAKVLKPVAKPLQLDLSHKPHVILIVGVNGTGKTTTI 314 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ K+S AGLKVM+AAGDTFR+AAI+QLKIWADRT ++F+ +++G+DAA LA++AF+Q Sbjct: 315 GKLAAKLSGAGLKVMVAAGDTFRAAAIEQLKIWADRTKSEFIGTKLGADAAGLAFDAFQQ 374 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A K DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNAL Q Sbjct: 375 AKANKSDVLIIDTAGRLQNKTELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNALNQ 434 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 VE+F VAG GLIMTK+DGTARGG L+ I HK+PVYF+GVGEG++DLEPF A++F+ Sbjct: 435 VEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVDDLEPFEAEEFAQ 494 Query: 309 VITGC 313 I G Sbjct: 495 AIAGI 499 >gi|218507763|ref|ZP_03505641.1| cell division protein [Rhizobium etli Brasil 5] Length = 303 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 180/300 (60%), Positives = 236/300 (78%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W ++L G A TS +L IT + + R+LDD ++LEDLLI++D+GV A ++ + L + Sbjct: 1 WFQRLRNGLARTSSQLTGQITALFTKRKLDDETLQDLEDLLIQADLGVETALRVTDTLAS 60 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 +RY KDV+ + V ++ I K+L P++KP D SH+PHVILVVGVNG GKTT IGKL+ Sbjct: 61 ERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGVNGTGKTTTIGKLA 120 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 K+S AGLKVM+AAGDTFR+AAI+QLKIWA+RT+++FV +++G+DAA LAY+AF+QA+AK Sbjct: 121 AKLSGAGLKVMVAAGDTFRAAAIEQLKIWAERTNSEFVGTKLGADAAGLAYDAFEQAKAK 180 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 K DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNAL QVE+F Sbjct: 181 KCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNALSQVEIF 240 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 VAG GLIMTK+DGTARGG L+ I HK+PVYF+GVGEG++DLEPF A+DF+ I G Sbjct: 241 RNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVDDLEPFEAEDFAHAIAG 300 >gi|307943541|ref|ZP_07658885.1| signal recognition particle-docking protein FtsY [Roseibium sp. TrichSKD4] gi|307773171|gb|EFO32388.1| signal recognition particle-docking protein FtsY [Roseibium sp. TrichSKD4] Length = 371 Score = 356 bits (914), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 170/313 (54%), Positives = 232/313 (74%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 +++ A LSW +KL KG + +S L +GI+ I + R+LD + EELED+LI++D+GV Sbjct: 58 VADSSEAEPKLSWFQKLKKGLSRSSSALTDGISSIFTKRKLDASMLEELEDILIQADLGV 117 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 A I + L RY K+++ V +SE + K+L P+++P N + +PHV+L+VGVN Sbjct: 118 DTAMAITDRLSDGRYDKEIAPDEVRAILSEEVEKVLAPVAQPLNLETGKKPHVVLMVGVN 177 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKLS+K++ G KVMLAAGDTFR+AA++QLKIW +RT A+ + + G+DAA Sbjct: 178 GTGKTTTIGKLSQKLAAEGKKVMLAAGDTFRAAAVEQLKIWGERTGAEVIARDTGADAAG 237 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LA++A K+A AK VDVL+IDTAGRL N + LM + K+IRV+K+ DP APH+VL LDAT Sbjct: 238 LAFDAMKEAMAKDVDVLLIDTAGRLQNKAELMDELEKVIRVIKKHDPEAPHTVLLTLDAT 297 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNAL QVE+F VAG TGL+MTK+DGTARGG L+ I H++PV+F+GVGEG++DLEP Sbjct: 298 TGQNALNQVEIFGKVAGVTGLVMTKLDGTARGGILVAIAAKHQMPVHFIGVGEGVDDLEP 357 Query: 301 FVAKDFSAVITGC 313 F AKDF++ I G Sbjct: 358 FSAKDFASAIAGL 370 >gi|239833060|ref|ZP_04681389.1| signal recognition particle-docking protein FtsY [Ochrobactrum intermedium LMG 3301] gi|239825327|gb|EEQ96895.1| signal recognition particle-docking protein FtsY [Ochrobactrum intermedium LMG 3301] Length = 490 Score = 355 bits (910), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 168/303 (55%), Positives = 223/303 (73%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW +L +G +S L E I I + R+LDD ++LED+LI++D+G+ A ++ + L Sbjct: 187 LSWFERLRRGLLRSSNSLSESIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 246 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + RY KDV+ + V + I K+L P++KP D SH+PHVILVVGVNG GKTT IGK Sbjct: 247 ASGRYGKDVTGEEVRTIMGAEIEKVLGPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 306 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+A+++A+ Sbjct: 307 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKAK 366 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QVE Sbjct: 367 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 426 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F +AG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEG++DLEPF AKDF+ I Sbjct: 427 IFKNIAGVNGLVMTKLDGTARGGILVAISAKHKLPIYFIGVGEGVDDLEPFAAKDFARAI 486 Query: 311 TGC 313 G Sbjct: 487 AGV 489 >gi|153008260|ref|YP_001369475.1| signal recognition particle-docking protein FtsY [Ochrobactrum anthropi ATCC 49188] gi|151560148|gb|ABS13646.1| signal recognition particle-docking protein FtsY [Ochrobactrum anthropi ATCC 49188] Length = 494 Score = 355 bits (910), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 168/303 (55%), Positives = 223/303 (73%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW +L +G +S L E I I + R+LDD ++LED+LI++D+G+ A ++ + L Sbjct: 191 LSWFERLRRGLLRSSNSLSESIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 250 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + RY KDV+ + V + I K+L P++KP D SH+PHVILVVGVNG GKTT IGK Sbjct: 251 ASGRYGKDVTGEEVRTIMGAEIEKVLGPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 310 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+A+++A+ Sbjct: 311 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKAK 370 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QVE Sbjct: 371 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 430 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F +AG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEG++DLEPF AKDF+ I Sbjct: 431 IFKNIAGVNGLVMTKLDGTARGGILVAISAKHKLPIYFIGVGEGVDDLEPFAAKDFARAI 490 Query: 311 TGC 313 G Sbjct: 491 AGV 493 >gi|256059908|ref|ZP_05450094.1| GTP-binding signal recognition particle [Brucella neotomae 5K33] gi|261323880|ref|ZP_05963077.1| signal recognition particle-docking protein FtsY [Brucella neotomae 5K33] gi|261299860|gb|EEY03357.1| signal recognition particle-docking protein FtsY [Brucella neotomae 5K33] Length = 465 Score = 353 bits (907), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 172/303 (56%), Positives = 224/303 (73%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW +L +G A +S L I I + R+LDD ++LED+LI++D+G+ A ++ + L Sbjct: 162 LSWFERLRRGLARSSSSLSNSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 221 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + RY KDVS + V +S I K+L P++KP D SH+PHVILVVGVNG GKTT IGK Sbjct: 222 ASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 281 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+A+++A+ Sbjct: 282 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKAK 341 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QVE Sbjct: 342 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 401 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEGI+DLEPF AKDF+ I Sbjct: 402 IFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARAI 461 Query: 311 TGC 313 G Sbjct: 462 AGV 464 >gi|148560595|ref|YP_001259756.1| cell division protein FtsY [Brucella ovis ATCC 25840] gi|163843957|ref|YP_001628361.1| signal recognition particle-docking protein FtsY [Brucella suis ATCC 23445] gi|189025002|ref|YP_001935770.1| cell division protein FtsY [Brucella abortus S19] gi|237816295|ref|ZP_04595288.1| signal recognition particle-docking protein FtsY [Brucella abortus str. 2308 A] gi|254690075|ref|ZP_05153329.1| GTP-binding signal recognition particle [Brucella abortus bv. 6 str. 870] gi|254694563|ref|ZP_05156391.1| GTP-binding signal recognition particle [Brucella abortus bv. 3 str. Tulya] gi|254696188|ref|ZP_05158016.1| GTP-binding signal recognition particle [Brucella abortus bv. 2 str. 86/8/59] gi|254700575|ref|ZP_05162403.1| GTP-binding signal recognition particle [Brucella suis bv. 5 str. 513] gi|254704945|ref|ZP_05166773.1| GTP-binding signal recognition particle [Brucella suis bv. 3 str. 686] gi|254707541|ref|ZP_05169369.1| GTP-binding signal recognition particle [Brucella pinnipedialis M163/99/10] gi|254713651|ref|ZP_05175462.1| GTP-binding signal recognition particle [Brucella ceti M644/93/1] gi|254715995|ref|ZP_05177806.1| GTP-binding signal recognition particle [Brucella ceti M13/05/1] gi|254731106|ref|ZP_05189684.1| GTP-binding signal recognition particle [Brucella abortus bv. 4 str. 292] gi|256030448|ref|ZP_05444062.1| GTP-binding signal recognition particle [Brucella pinnipedialis M292/94/1] gi|256158432|ref|ZP_05456330.1| GTP-binding signal recognition particle [Brucella ceti M490/95/1] gi|256253852|ref|ZP_05459388.1| GTP-binding signal recognition particle [Brucella ceti B1/94] gi|256258328|ref|ZP_05463864.1| GTP-binding signal recognition particle [Brucella abortus bv. 9 str. C68] gi|260755613|ref|ZP_05867961.1| signal recognition particle-docking protein FtsY [Brucella abortus bv. 6 str. 870] gi|260884639|ref|ZP_05896253.1| signal recognition particle-docking protein FtsY [Brucella abortus bv. 9 str. C68] gi|261214887|ref|ZP_05929168.1| signal recognition particle-docking protein FtsY [Brucella abortus bv. 3 str. Tulya] gi|261217763|ref|ZP_05932044.1| signal recognition particle-docking protein FtsY [Brucella ceti M13/05/1] gi|261220990|ref|ZP_05935271.1| signal recognition particle-docking protein FtsY [Brucella ceti B1/94] gi|261316421|ref|ZP_05955618.1| signal recognition particle-docking protein FtsY [Brucella pinnipedialis B2/94] gi|261755645|ref|ZP_05999354.1| signal recognition particle-docking protein FtsY [Brucella suis bv. 3 str. 686] gi|265987492|ref|ZP_06100049.1| signal recognition particle-docking protein FtsY [Brucella pinnipedialis M292/94/1] gi|265996949|ref|ZP_06109506.1| signal recognition particle-docking protein FtsY [Brucella ceti M490/95/1] gi|294851176|ref|ZP_06791849.1| signal recognition particle receptor [Brucella sp. NVSL 07-0026] gi|148371852|gb|ABQ61831.1| cell division protein FtsY [Brucella ovis ATCC 25840] gi|163674680|gb|ABY38791.1| signal recognition particle-docking protein FtsY [Brucella suis ATCC 23445] gi|189020574|gb|ACD73296.1| cell division protein FtsY [Brucella abortus S19] gi|237788362|gb|EEP62577.1| signal recognition particle-docking protein FtsY [Brucella abortus str. 2308 A] gi|260675721|gb|EEX62542.1| signal recognition particle-docking protein FtsY [Brucella abortus bv. 6 str. 870] gi|260874167|gb|EEX81236.1| signal recognition particle-docking protein FtsY [Brucella abortus bv. 9 str. C68] gi|260916494|gb|EEX83355.1| signal recognition particle-docking protein FtsY [Brucella abortus bv. 3 str. Tulya] gi|260919574|gb|EEX86227.1| signal recognition particle-docking protein FtsY [Brucella ceti B1/94] gi|260922852|gb|EEX89420.1| signal recognition particle-docking protein FtsY [Brucella ceti M13/05/1] gi|261295644|gb|EEX99140.1| signal recognition particle-docking protein FtsY [Brucella pinnipedialis B2/94] gi|261745398|gb|EEY33324.1| signal recognition particle-docking protein FtsY [Brucella suis bv. 3 str. 686] gi|262551417|gb|EEZ07407.1| signal recognition particle-docking protein FtsY [Brucella ceti M490/95/1] gi|264659689|gb|EEZ29950.1| signal recognition particle-docking protein FtsY [Brucella pinnipedialis M292/94/1] gi|294819765|gb|EFG36764.1| signal recognition particle receptor [Brucella sp. NVSL 07-0026] Length = 465 Score = 353 bits (907), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 172/303 (56%), Positives = 225/303 (74%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW +L +G A +S L + I I + R+LDD ++LED+LI++D+G+ A ++ + L Sbjct: 162 LSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 221 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + RY KDVS + V +S I K+L P++KP D SH+PHVILVVGVNG GKTT IGK Sbjct: 222 ASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 281 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+A+++A+ Sbjct: 282 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKAK 341 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QVE Sbjct: 342 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 401 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEGI+DLEPF AKDF+ I Sbjct: 402 IFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARAI 461 Query: 311 TGC 313 G Sbjct: 462 AGV 464 >gi|306842917|ref|ZP_07475553.1| signal recognition particle-docking protein FtsY [Brucella sp. BO2] gi|306286940|gb|EFM58460.1| signal recognition particle-docking protein FtsY [Brucella sp. BO2] Length = 470 Score = 353 bits (907), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 171/303 (56%), Positives = 225/303 (74%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW +L +G A +S L + I I + R+LDD ++LED+LI++D+G+ A ++ + L Sbjct: 167 LSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 226 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + RY KDVS + V +S I K+L P++KP D SH+PHVILVVGVNG GKTT IGK Sbjct: 227 ASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 286 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+A+++A+ Sbjct: 287 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKAK 346 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QVE Sbjct: 347 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 406 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEG++DLEPF AKDF+ I Sbjct: 407 IFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGVDDLEPFAAKDFARAI 466 Query: 311 TGC 313 G Sbjct: 467 AGV 469 >gi|23502784|ref|NP_698911.1| signal recognition particle-docking protein FtsY [Brucella suis 1330] gi|62290788|ref|YP_222581.1| signal recognition particle-docking protein FtsY [Brucella abortus bv. 1 str. 9-941] gi|82700699|ref|YP_415273.1| GTP-binding signal recognition particle [Brucella melitensis biovar Abortus 2308] gi|254708922|ref|ZP_05170733.1| cell division protein FtsY [Brucella pinnipedialis B2/94] gi|256370336|ref|YP_003107847.1| signal recognition particle-docking protein FtsY [Brucella microti CCM 4915] gi|260546052|ref|ZP_05821792.1| cell division protein FtsY [Brucella abortus NCTC 8038] gi|260758838|ref|ZP_05871186.1| signal recognition particle-docking protein FtsY [Brucella abortus bv. 4 str. 292] gi|260760562|ref|ZP_05872905.1| signal recognition particle-docking protein FtsY [Brucella abortus bv. 2 str. 86/8/59] gi|261315022|ref|ZP_05954219.1| signal recognition particle-docking protein FtsY [Brucella pinnipedialis M163/99/10] gi|261321389|ref|ZP_05960586.1| signal recognition particle-docking protein FtsY [Brucella ceti M644/93/1] gi|261751083|ref|ZP_05994792.1| signal recognition particle-docking protein FtsY [Brucella suis bv. 5 str. 513] gi|297247175|ref|ZP_06930893.1| signal recognition particle receptor [Brucella abortus bv. 5 str. B3196] gi|23348805|gb|AAN30826.1| signal recognition particle-docking protein FtsY [Brucella suis 1330] gi|62196920|gb|AAX75220.1| FtsY, signal recognition particle-docking protein [Brucella abortus bv. 1 str. 9-941] gi|82616800|emb|CAJ11890.1| GTP-binding signal recognition particle (SRP54) G-domain:ATP/GTP-binding site motif A (P-loop):AAA ATPase:Cell division trans [Brucella melitensis biovar Abortus 2308] gi|256000499|gb|ACU48898.1| signal recognition particle-docking protein FtsY [Brucella microti CCM 4915] gi|260096159|gb|EEW80035.1| cell division protein FtsY [Brucella abortus NCTC 8038] gi|260669156|gb|EEX56096.1| signal recognition particle-docking protein FtsY [Brucella abortus bv. 4 str. 292] gi|260670994|gb|EEX57815.1| signal recognition particle-docking protein FtsY [Brucella abortus bv. 2 str. 86/8/59] gi|261294079|gb|EEX97575.1| signal recognition particle-docking protein FtsY [Brucella ceti M644/93/1] gi|261304048|gb|EEY07545.1| signal recognition particle-docking protein FtsY [Brucella pinnipedialis M163/99/10] gi|261740836|gb|EEY28762.1| signal recognition particle-docking protein FtsY [Brucella suis bv. 5 str. 513] gi|297174344|gb|EFH33691.1| signal recognition particle receptor [Brucella abortus bv. 5 str. B3196] Length = 463 Score = 353 bits (906), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 172/303 (56%), Positives = 225/303 (74%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW +L +G A +S L + I I + R+LDD ++LED+LI++D+G+ A ++ + L Sbjct: 160 LSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 219 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + RY KDVS + V +S I K+L P++KP D SH+PHVILVVGVNG GKTT IGK Sbjct: 220 ASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 279 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+A+++A+ Sbjct: 280 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKAK 339 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QVE Sbjct: 340 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 399 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEGI+DLEPF AKDF+ I Sbjct: 400 IFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARAI 459 Query: 311 TGC 313 G Sbjct: 460 AGV 462 >gi|110635717|ref|YP_675925.1| signal recognition particle-docking protein FtsY [Mesorhizobium sp. BNC1] gi|110286701|gb|ABG64760.1| signal recognition particle-docking protein FtsY [Chelativorans sp. BNC1] Length = 500 Score = 353 bits (906), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 166/302 (54%), Positives = 223/302 (73%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 W ++L +G +S +L++ I I R+LD+ ++LED+L+R+D+G+ A ++ + L Sbjct: 198 PWFQRLREGLYRSSRELRDNIAGIFLKRKLDEDTLQDLEDVLLRADLGLETAMRVTDALS 257 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 RY KD++ V ++E I K+L P++ P D SH+PHVILVVGVNG GKTT IGKL Sbjct: 258 VGRYGKDITGAEVQAVMAEEIEKVLKPVALPLELDLSHKPHVILVVGVNGTGKTTTIGKL 317 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K++ GL VMLAAGDTFR+AAI+QLKIW +RT + + S +G+DAA LAYEA+++A+A Sbjct: 318 AAKLAQGGLNVMLAAGDTFRAAAIEQLKIWGERTGSAVISSRLGADAAGLAYEAYEKAKA 377 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 DVLIIDTAGRL N + LMA + K++RVL + DP APH+VLQ LDATTGQNAL QVE+ Sbjct: 378 AGSDVLIIDTAGRLQNKAELMAELEKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVEI 437 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F VAG +GL+MTK+DGTARGG L+ I HK+PVYF+GVGEG++DLEPF A DF+ I Sbjct: 438 FRNVAGVSGLVMTKLDGTARGGILVAIAAKHKLPVYFIGVGEGVDDLEPFSASDFAKAIA 497 Query: 312 GC 313 G Sbjct: 498 GV 499 >gi|161619852|ref|YP_001593739.1| signal recognition particle-docking protein FtsY [Brucella canis ATCC 23365] gi|260567579|ref|ZP_05838049.1| cell division protein FtsY [Brucella suis bv. 4 str. 40] gi|161336663|gb|ABX62968.1| signal recognition particle-docking protein FtsY [Brucella canis ATCC 23365] gi|260157097|gb|EEW92177.1| cell division protein FtsY [Brucella suis bv. 4 str. 40] Length = 465 Score = 352 bits (904), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 172/303 (56%), Positives = 226/303 (74%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW +L +G A +S L + I+ I + R+LDD ++LED+LI++D+G+ A ++ + L Sbjct: 162 LSWFERLRRGLARSSSSLSDSISGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 221 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + RY KDVS + V +S I K+L P++KP D SH+PHVILVVGVNG GKTT IGK Sbjct: 222 ASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 281 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+A+++A+ Sbjct: 282 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSSVVSSKLGADAAGLAYDAWEKAK 341 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QVE Sbjct: 342 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 401 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEGI+DLEPF AKDF+ I Sbjct: 402 IFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARAI 461 Query: 311 TGC 313 G Sbjct: 462 AGV 464 >gi|225853372|ref|YP_002733605.1| signal recognition particle-docking protein FtsY [Brucella melitensis ATCC 23457] gi|256112266|ref|ZP_05453187.1| signal recognition particle-docking protein FtsY [Brucella melitensis bv. 3 str. Ether] gi|256263146|ref|ZP_05465678.1| cell division protein FtsY [Brucella melitensis bv. 2 str. 63/9] gi|225641737|gb|ACO01651.1| signal recognition particle-docking protein FtsY [Brucella melitensis ATCC 23457] gi|263093049|gb|EEZ17199.1| cell division protein FtsY [Brucella melitensis bv. 2 str. 63/9] gi|326409935|gb|ADZ67000.1| signal recognition particle-docking protein FtsY [Brucella melitensis M28] gi|326539648|gb|ADZ87863.1| signal recognition particle-docking protein FtsY [Brucella melitensis M5-90] Length = 465 Score = 352 bits (903), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 171/303 (56%), Positives = 224/303 (73%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW +L +G A +S L + I I + R+LDD ++LED+LI++D+G+ A ++ + L Sbjct: 162 LSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 221 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + RY KDV + V +S I K+L P++KP D SH+PHVILVVGVNG GKTT IGK Sbjct: 222 ASGRYGKDVPGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 281 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+A+++A+ Sbjct: 282 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKAK 341 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QVE Sbjct: 342 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 401 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEGI+DLEPF AKDF+ I Sbjct: 402 IFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARAI 461 Query: 311 TGC 313 G Sbjct: 462 AGV 464 >gi|225628133|ref|ZP_03786168.1| signal recognition particle-docking protein FtsY [Brucella ceti str. Cudo] gi|260169358|ref|ZP_05756169.1| signal recognition particle-docking protein FtsY [Brucella sp. F5/99] gi|261758876|ref|ZP_06002585.1| cell division protein FtsY [Brucella sp. F5/99] gi|225616958|gb|EEH14005.1| signal recognition particle-docking protein FtsY [Brucella ceti str. Cudo] gi|261738860|gb|EEY26856.1| cell division protein FtsY [Brucella sp. F5/99] Length = 465 Score = 352 bits (902), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 171/303 (56%), Positives = 225/303 (74%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW +L +G A +S L + I I + R+LDD ++LED+LI++D+G+ A ++ + L Sbjct: 162 LSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 221 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + RY KDVS + V +S I K+L P++KP D SH+PHVILVVGVNG GKTT IGK Sbjct: 222 ASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 281 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+A+++A+ Sbjct: 282 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKAK 341 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QV+ Sbjct: 342 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVD 401 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEGI+DLEPF AKDF+ I Sbjct: 402 IFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARAI 461 Query: 311 TGC 313 G Sbjct: 462 AGV 464 >gi|254504835|ref|ZP_05116986.1| signal recognition particle-docking protein FtsY, putative [Labrenzia alexandrii DFL-11] gi|222440906|gb|EEE47585.1| signal recognition particle-docking protein FtsY, putative [Labrenzia alexandrii DFL-11] Length = 465 Score = 352 bits (902), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 169/307 (55%), Positives = 226/307 (73%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 V E LSW ++L KG + +S L +GI+ I + R+LD + EELED+LI++D+GV A Sbjct: 157 VEEEKLSWFQRLKKGLSRSSSALTDGISSIFTKRKLDAAMLEELEDILIQADLGVDTAMA 216 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 I E L RY K++S + V +SE + K+L +++P + + +PHV+L+VGVNG GKT Sbjct: 217 ITERLSDGRYDKEISPEEVREILSEEVEKVLASVAEPLDLNSGKKPHVVLMVGVNGTGKT 276 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKLSKK+ + G VMLAAGDTFR+AA++QLKIW +RT A+ + + G+DAA LA++A Sbjct: 277 TTIGKLSKKLREEGKTVMLAAGDTFRAAAVEQLKIWGERTGAEVIARDTGADAAGLAFDA 336 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 K+A K+VDVL+IDTAGRL N + LM + K+IRV+K+ DP APH+ L LDATTGQNA Sbjct: 337 MKEATEKQVDVLLIDTAGRLQNKAELMDELEKVIRVIKKHDPDAPHTCLLTLDATTGQNA 396 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QVE+F VAG TGL+MTK+DGTARGG L+ I H +PV+F+GVGEG+ DLEPF AKD Sbjct: 397 LNQVEIFGKVAGVTGLVMTKLDGTARGGILVAIAAKHGLPVHFIGVGEGVEDLEPFSAKD 456 Query: 306 FSAVITG 312 FS+ I G Sbjct: 457 FSSAIAG 463 >gi|265993697|ref|ZP_06106254.1| signal recognition particle-docking protein FtsY [Brucella melitensis bv. 3 str. Ether] gi|262764678|gb|EEZ10599.1| signal recognition particle-docking protein FtsY [Brucella melitensis bv. 3 str. Ether] Length = 463 Score = 352 bits (902), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 171/303 (56%), Positives = 224/303 (73%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW +L +G A +S L + I I + R+LDD ++LED+LI++D+G+ A ++ + L Sbjct: 160 LSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 219 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + RY KDV + V +S I K+L P++KP D SH+PHVILVVGVNG GKTT IGK Sbjct: 220 ASGRYGKDVPGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 279 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+A+++A+ Sbjct: 280 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKAK 339 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QVE Sbjct: 340 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 399 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEGI+DLEPF AKDF+ I Sbjct: 400 IFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARAI 459 Query: 311 TGC 313 G Sbjct: 460 AGV 462 >gi|254717993|ref|ZP_05179804.1| cell division protein FtsY [Brucella sp. 83/13] gi|265982939|ref|ZP_06095674.1| signal recognition particle-docking protein FtsY [Brucella sp. 83/13] gi|306839772|ref|ZP_07472573.1| signal recognition particle-docking protein FtsY [Brucella sp. NF 2653] gi|264661531|gb|EEZ31792.1| signal recognition particle-docking protein FtsY [Brucella sp. 83/13] gi|306405127|gb|EFM61405.1| signal recognition particle-docking protein FtsY [Brucella sp. NF 2653] Length = 475 Score = 352 bits (902), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 170/303 (56%), Positives = 224/303 (73%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW +L +G A +S L + I I + R+LDD ++LED+LI++D+G+ A ++ + L Sbjct: 172 LSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 231 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + RY KDVS + V +S I K+L P++KP D SH+PHVILVVGVNG GKTT IGK Sbjct: 232 ASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 291 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+ +++A+ Sbjct: 292 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDTWEKAK 351 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QVE Sbjct: 352 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 411 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEG++DLEPF AKDF+ I Sbjct: 412 IFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGVDDLEPFAAKDFARAI 471 Query: 311 TGC 313 G Sbjct: 472 AGV 474 >gi|13473652|ref|NP_105220.1| cell division protein FtsY [Mesorhizobium loti MAFF303099] gi|14024402|dbj|BAB51006.1| mlr4320 [Mesorhizobium loti MAFF303099] Length = 313 Score = 351 bits (901), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 165/302 (54%), Positives = 223/302 (73%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW +++ G A +S +L I + + R+LD+ ++LED+LIR+D+G+ A +I + L Sbjct: 11 SWFQRMRDGLARSSRELTGNIAGVFTKRKLDEDTLQDLEDVLIRADLGMETALRITDALA 70 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 RY KDVS V ++ + K+L P+++P D SH+PHVILVVGVNG GKTT IGKL Sbjct: 71 ASRYGKDVSDTDVRTVMAAEVEKVLTPVARPLELDLSHKPHVILVVGVNGTGKTTTIGKL 130 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K++D GL VMLAAGDTFR+AAI+QLKIW +RT + + S++G+DAA LAY+AF++A+ Sbjct: 131 AAKLTDGGLSVMLAAGDTFRAAAIEQLKIWGERTKSPVIASKLGADAAGLAYDAFEKAKE 190 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ +DATTGQNAL QVE+ Sbjct: 191 AGSDVLIIDTAGRLQNKTELMAELEKIVRVLGKLDPEAPHTVLQTVDATTGQNALNQVEI 250 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F +AG GL+MTK+DGTARGG L+ I HK+PVYF+GVGE ++DLEPF A +F+ I Sbjct: 251 FRNIAGVNGLVMTKLDGTARGGILVAIAAKHKLPVYFIGVGEQVDDLEPFSASEFARAIA 310 Query: 312 GC 313 G Sbjct: 311 GV 312 >gi|306843384|ref|ZP_07475985.1| signal recognition particle-docking protein FtsY [Brucella sp. BO1] gi|306276075|gb|EFM57775.1| signal recognition particle-docking protein FtsY [Brucella sp. BO1] Length = 469 Score = 351 bits (900), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 170/303 (56%), Positives = 225/303 (74%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW +L +G A +S L + I I + R+LDD ++LED+LI++D+G+ A ++ + L Sbjct: 166 LSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 225 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + RY KDVS + V +S I K+L P++KP + SH+PHVILVVGVNG GKTT IGK Sbjct: 226 ASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELNLSHKPHVILVVGVNGTGKTTTIGK 285 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+A+++A+ Sbjct: 286 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKAK 345 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QVE Sbjct: 346 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 405 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEG++DLEPF AKDF+ I Sbjct: 406 IFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGVDDLEPFAAKDFARAI 465 Query: 311 TGC 313 G Sbjct: 466 AGV 468 >gi|118591327|ref|ZP_01548725.1| GTP-binding signal recognition particle (SRP54) G-domain:ATP/GTP-binding site motif A (P-loop):AAA [Stappia aggregata IAM 12614] gi|118435999|gb|EAV42642.1| GTP-binding signal recognition particle (SRP54) G-domain:ATP/GTP-binding site motif A (P-loop):AAA [Stappia aggregata IAM 12614] Length = 474 Score = 350 bits (897), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 165/302 (54%), Positives = 225/302 (74%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW ++L G + +S L EGI+ I + R+LD + EELED+LI++D+GV A I + L Sbjct: 171 LSWFQRLKNGLSRSSASLTEGISSIFTKRKLDASMLEELEDILIQADLGVDTAMAITDRL 230 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 RY K++S + V ++E + K+L P+++P + D +PHV+L+VGVNG GKTT IGK Sbjct: 231 SDGRYNKEISPEEVRAILAEEVEKVLAPVARPLDLDTGKKPHVVLMVGVNGTGKTTTIGK 290 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 LS+K+ G VMLAAGDTFR+AA++QLKIW +RT A+ + + G+DAA LAY+A K+A+ Sbjct: 291 LSQKLRSEGKTVMLAAGDTFRAAAVEQLKIWGERTGAEVIARDTGADAAGLAYDAMKEAK 350 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 AK VDVL++DTAGRL N + LM + K+IRV+K+ DP APH+VL LDATTGQNAL QVE Sbjct: 351 AKGVDVLLVDTAGRLQNKAELMDELEKVIRVIKKHDPEAPHTVLLTLDATTGQNALNQVE 410 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F VAG TGL+MTK+DGTARGG L+ I H +PV+F+GVGEG+ DLEPF A++F++ I Sbjct: 411 IFGKVAGVTGLVMTKLDGTARGGILVAIAAKHAMPVHFIGVGEGVADLEPFSAREFASAI 470 Query: 311 TG 312 G Sbjct: 471 AG 472 >gi|319780718|ref|YP_004140194.1| signal recognition particle-docking protein FtsY [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166606|gb|ADV10144.1| signal recognition particle-docking protein FtsY [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 601 Score = 349 bits (896), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 164/302 (54%), Positives = 221/302 (73%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW +++ G A +S +L I + + R+LD+ ++LED+LIR+D+G+ A ++ + L Sbjct: 299 SWFQRMKDGLARSSKELTGNIAGVFTKRKLDEETLQDLEDVLIRADLGMETALRVTDALA 358 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 RY KDVS V ++ + K+L ++ P D SH+PHVILVVGVNG GKTT IGKL Sbjct: 359 ASRYGKDVSDTEVRAIMAAEVEKVLTHVAMPLELDLSHKPHVILVVGVNGTGKTTTIGKL 418 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K++D GL VMLAAGDTFR+AAI+QLKIW +RT + + S++G+DAA LAY+AF++A+ Sbjct: 419 AAKLTDGGLSVMLAAGDTFRAAAIEQLKIWGERTKSPVIASKLGADAAGLAYDAFERAKE 478 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ +DATTGQNAL QVE+ Sbjct: 479 AGSDVLIIDTAGRLQNKTELMAELEKIVRVLGKLDPEAPHTVLQTVDATTGQNALNQVEI 538 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F VAG GL+MTK+DGTARGG L+ I HK+PVYF+GVGE ++DLEPF A +F+ I Sbjct: 539 FRNVAGVNGLVMTKLDGTARGGILVAIAAKHKLPVYFIGVGEQVDDLEPFSASEFARAIA 598 Query: 312 GC 313 G Sbjct: 599 GV 600 >gi|256045538|ref|ZP_05448421.1| signal recognition particle receptor FTSY [Brucella melitensis bv. 1 str. Rev.1] gi|260562848|ref|ZP_05833334.1| cell division protein FtsY [Brucella melitensis bv. 1 str. 16M] gi|260152864|gb|EEW87956.1| cell division protein FtsY [Brucella melitensis bv. 1 str. 16M] Length = 465 Score = 349 bits (896), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 170/303 (56%), Positives = 223/303 (73%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW +L +G A +S L + I I + R+LDD ++LED+LI++D+G+ A ++ + L Sbjct: 162 LSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 221 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + Y KDV + V +S I K+L P++KP D SH+PHVILVVGVNG GKTT IGK Sbjct: 222 ASGHYGKDVPGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 281 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+A+++A+ Sbjct: 282 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKAK 341 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QVE Sbjct: 342 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 401 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEGI+DLEPF AKDF+ I Sbjct: 402 IFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARAI 461 Query: 311 TGC 313 G Sbjct: 462 AGV 464 >gi|265991964|ref|ZP_06104521.1| signal recognition particle-docking protein FtsY [Brucella melitensis bv. 1 str. Rev.1] gi|263003030|gb|EEZ15323.1| signal recognition particle-docking protein FtsY [Brucella melitensis bv. 1 str. Rev.1] Length = 463 Score = 349 bits (895), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 170/303 (56%), Positives = 223/303 (73%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW +L +G A +S L + I I + R+LDD ++LED+LI++D+G+ A ++ + L Sbjct: 160 LSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 219 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + Y KDV + V +S I K+L P++KP D SH+PHVILVVGVNG GKTT IGK Sbjct: 220 ASGHYGKDVPGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 279 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+A+++A+ Sbjct: 280 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKAK 339 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QVE Sbjct: 340 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 399 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEGI+DLEPF AKDF+ I Sbjct: 400 IFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARAI 459 Query: 311 TGC 313 G Sbjct: 460 AGV 462 >gi|260469862|ref|ZP_05814009.1| signal recognition particle-docking protein FtsY [Mesorhizobium opportunistum WSM2075] gi|259028368|gb|EEW29697.1| signal recognition particle-docking protein FtsY [Mesorhizobium opportunistum WSM2075] Length = 326 Score = 348 bits (893), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 164/302 (54%), Positives = 223/302 (73%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW +++ G A +S +L I + + R+LD+ ++LED+LIR+D+G+ A ++ + L Sbjct: 24 SWFQRMRDGLARSSRELTGNIAGVFTKRKLDEDTLQDLEDVLIRADLGMETALRVTDALA 83 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + RY KDVS V ++ + K+L ++ P D SH+PHVILVVGVNG GKTT IGKL Sbjct: 84 SSRYGKDVSDTEVRAIMAAEVEKVLTHVAMPLELDLSHKPHVILVVGVNGTGKTTTIGKL 143 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K++D GL VMLAAGDTFR+AAI+QLKIW +RT++ + S++G+DAA LAY+AF++A+ Sbjct: 144 AAKLTDGGLSVMLAAGDTFRAAAIEQLKIWGERTNSPVIASKLGADAAGLAYDAFERAKE 203 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ +DATTGQNAL QVE+ Sbjct: 204 AGSDVLIIDTAGRLQNKTELMAELEKIVRVLGKLDPEAPHTVLQTVDATTGQNALNQVEI 263 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F VAG GL+MTK+DGTARGG L+ I HK+PVYF+GVGE ++DLEPF A +F+ I Sbjct: 264 FRNVAGVNGLVMTKLDGTARGGILVAIAAKHKLPVYFIGVGEQVDDLEPFSASEFARAIA 323 Query: 312 GC 313 G Sbjct: 324 GV 325 >gi|17986415|ref|NP_539049.1| signal recognition particle receptor FTSY [Brucella melitensis bv. 1 str. 16M] gi|17982009|gb|AAL51313.1| signal recognition particle receptor ftsy [Brucella melitensis bv. 1 str. 16M] Length = 314 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 171/313 (54%), Positives = 225/313 (71%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 M + LSW +L +G A +S L + I I + R+LDD ++LED+LI++D+G+ Sbjct: 1 MPAEVAPEPKLSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGL 60 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 A ++ + L + Y KDV + V +S I K+L P++KP D SH+PHVILVVGVN Sbjct: 61 ETAMRVTDALASGHYGKDVPGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVN 120 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA Sbjct: 121 GTGKTTTIGKLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAG 180 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LAY+A+++A+ DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDAT Sbjct: 181 LAYDAWEKAKEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDAT 240 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNAL QVE+F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEGI+DLEP Sbjct: 241 TGQNALNQVEIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEP 300 Query: 301 FVAKDFSAVITGC 313 F AKDF+ I G Sbjct: 301 FAAKDFARAIAGV 313 >gi|328541784|ref|YP_004301893.1| Cell division transporter substrate-binding protein FtsY (Signal recognition particle receptor) [polymorphum gilvum SL003B-26A1] gi|326411536|gb|ADZ68599.1| Cell division transporter substrate-binding protein FtsY (Signal recognition particle receptor) [Polymorphum gilvum SL003B-26A1] Length = 419 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 166/311 (53%), Positives = 227/311 (72%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + A+ LSW +L +G + +S L EGI+ I + RRLD + +ELED+LI++D+GV Sbjct: 107 APDPAAAPRLSWFGRLKQGLSRSSSALTEGISSIFTKRRLDAAMLDELEDVLIQADLGVD 166 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 A I E L R+ K++S + V ++E + K+L P+++P + D HRPHV+L+VGVNG Sbjct: 167 TATAITERLSVGRFDKEISAEEVRAVLAEEVEKVLAPVARPLDLDGEHRPHVVLMVGVNG 226 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKLS K++ G VMLAAGDTFR+AA++QLKIW RT A+ V + G+DAA L Sbjct: 227 TGKTTTIGKLSSKLAAEGRTVMLAAGDTFRAAAVEQLKIWGSRTGAEVVARDTGADAAGL 286 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 A++A + A+ K VDVL++DTAGRL N + LMA + K+IRVL+++DP APH+VL LDATT Sbjct: 287 AFDALQAARDKGVDVLLVDTAGRLQNKAELMAELEKVIRVLRKIDPAAPHTVLLTLDATT 346 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL QVE+F AG TGL+MTK+DGTARGG L+ I + +PV+F+GVGEG++DLEPF Sbjct: 347 GQNALSQVEIFGRTAGVTGLVMTKLDGTARGGILVAIAAKYGLPVHFIGVGEGVDDLEPF 406 Query: 302 VAKDFSAVITG 312 AKD++ I G Sbjct: 407 SAKDYARAIAG 417 >gi|222150095|ref|YP_002551052.1| cell division particle [Agrobacterium vitis S4] gi|221737077|gb|ACM38040.1| cell division particle [Agrobacterium vitis S4] Length = 454 Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 176/301 (58%), Positives = 232/301 (77%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW ++L G TS +L I+ + + R+LD+ EELEDLLI++D+GV A ++ L Sbjct: 149 SWFQRLKAGLFRTSSQLTGQISALFTKRKLDEETLEELEDLLIQADLGVETAMRVTGTLS 208 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++RY KDV+ + V ++ I K+L P++KP D +H+PHVILVVGVNG GKTT IGKL Sbjct: 209 SERYGKDVTGEDVTRIMAAEIVKVLKPVAKPLALDLNHKPHVILVVGVNGTGKTTTIGKL 268 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K+S +GLKVMLAAGDTFR+AAI+QLKIWADRT + F+ +++G+DAA LAY+AF++A+A Sbjct: 269 AAKLSGSGLKVMLAAGDTFRAAAIEQLKIWADRTGSTFIGTKLGADAAGLAYDAFEKAKA 328 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +K DVLIIDTAGRL N + LM + K++RVL +LDP APH+VLQ LDATTGQNA+ QVE+ Sbjct: 329 EKSDVLIIDTAGRLQNKTELMDELEKIVRVLSKLDPDAPHTVLQTLDATTGQNAMNQVEI 388 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F VAG GLIMTK+DGTARGG L+ I HK+PVYF+GVGEG++DLEPF A+DF+ I Sbjct: 389 FRNVAGVNGLIMTKLDGTARGGILVAIAAKHKLPVYFIGVGEGVDDLEPFEAEDFARAIA 448 Query: 312 G 312 G Sbjct: 449 G 449 >gi|114705326|ref|ZP_01438234.1| GTP-binding signal recognition particle (SRP54) G-domain:ATP/GTP-binding site motif A (P-loop):AAA [Fulvimarina pelagi HTCC2506] gi|114540111|gb|EAU43231.1| GTP-binding signal recognition particle (SRP54) G-domain:ATP/GTP-binding site motif A (P-loop):AAA [Fulvimarina pelagi HTCC2506] Length = 403 Score = 343 bits (879), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 167/307 (54%), Positives = 222/307 (72%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 A+ L W+++L + +S L IT I + RRLDD V ++ ED+LI++D+GV A +I Sbjct: 87 AAPKLPWLQRLREALGRSSSNLTGSITSIFTKRRLDDDVLQDFEDVLIQADLGVETAMRI 146 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 + L RY K++S V ++E I K L P+++P D PHVILVVGVNG GKTT Sbjct: 147 TDRLSEGRYGKEISGSEVKRVLAEEIEKTLDPVAQPLELDLDKVPHVILVVGVNGTGKTT 206 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+ K++ AG+ V LAAGDTFR+AA++QLKIW +RT+++ V +IG+DAA LA++A+ Sbjct: 207 TIGKLAAKLTRAGISVTLAAGDTFRAAAVEQLKIWGERTNSEVVARQIGADAAGLAFDAY 266 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A K DVLIIDTAGRL N + LMA + K+IRVL++ DP +PH+VLQ LDATTGQNA+ Sbjct: 267 DVAVKNKSDVLIIDTAGRLQNKAELMAELEKIIRVLQKRDPDSPHTVLQTLDATTGQNAM 326 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QV++F VAG GL+MTK+DGTARGG L+ I HK+PVYF+GVGEGI+DLEPF AKDF Sbjct: 327 NQVDIFRNVAGVNGLVMTKLDGTARGGILVAIGSKHKLPVYFVGVGEGIDDLEPFKAKDF 386 Query: 307 SAVITGC 313 + I G Sbjct: 387 ANAIAGI 393 >gi|163869370|ref|YP_001610626.1| cell division protein [Bartonella tribocorum CIP 105476] gi|161019073|emb|CAK02631.1| cell division protein [Bartonella tribocorum CIP 105476] Length = 390 Score = 342 bits (878), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 162/312 (51%), Positives = 222/312 (71%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 + V + +W +L KG + +S +L I+D+ R+LD+ +ELED+LI++D+GV Sbjct: 76 LPEPSVEQKKTAWFGRLRKGLSLSSQRLSGSISDLFLKRKLDEETLQELEDILIQADLGV 135 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 A +I L + RY KD+S + V++ I K+L P++ P D SH+PHVIL+VGVN Sbjct: 136 ETATRITNTLASSRYGKDLSSDDIHTIVADEIKKVLEPVAMPLELDLSHKPHVILLVGVN 195 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+ K+++ GL VMLAAGDTFR+AAI+QL IW R + + +++G+DAA+ Sbjct: 196 GTGKTTTIGKLAAKLTEGGLNVMLAAGDTFRAAAIEQLHIWGKRIDSPVISTKLGADAAS 255 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LA++AF++A+ DVLIIDTAGRL N S LM + K+IRVL++ P APH++LQ LDAT Sbjct: 256 LAFDAFEKAKKANSDVLIIDTAGRLQNKSELMDELAKIIRVLRKHSPQAPHTILQTLDAT 315 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNAL QVE+F +AG GL+MTK+DGTARGG LI I HK+P+YF+GVGE I DL+P Sbjct: 316 TGQNALSQVEIFRNIAGVNGLVMTKLDGTARGGILIAIAAKHKLPIYFIGVGENIEDLQP 375 Query: 301 FVAKDFSAVITG 312 F A DF+ I G Sbjct: 376 FSASDFAETIVG 387 >gi|163757350|ref|ZP_02164439.1| putative cell division protein [Hoeflea phototrophica DFL-43] gi|162284852|gb|EDQ35134.1| putative cell division protein [Hoeflea phototrophica DFL-43] Length = 529 Score = 337 bits (865), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 172/300 (57%), Positives = 225/300 (75%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W ++L +G + TS +L IT I + R+LD+ EELED+L+++D+GV A +I + L + Sbjct: 227 WWQRLRQGLSRTSGQLTGQITGIFTKRKLDEETLEELEDVLLQADLGVETALRITDALAS 286 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 RY KD+S V +++ I ++L P++KP D SH+PHVILVVGVNG GKTT IGKL+ Sbjct: 287 GRYGKDISPAEVQKVMADEIARVLEPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGKLA 346 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 K+ GLKV LAAGDTFR+AAI+QLKIW DRT + V +++G+DAA LAYEAF+ A+A Sbjct: 347 AKLHSGGLKVTLAAGDTFRAAAIEQLKIWGDRTGSKVVSTKLGADAAGLAYEAFETARAD 406 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 DVLIIDTAGRL N + LM + K++RV+ +LDP APH+VLQ LDATTGQNAL QVE+F Sbjct: 407 GADVLIIDTAGRLQNRTELMDELAKVVRVIGKLDPDAPHTVLQTLDATTGQNALNQVEIF 466 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 VAG GL+MTK+DGTARGG L+ I HK+PVYF+GVGEG++DLEPF A DF++ I G Sbjct: 467 KNVAGVNGLVMTKLDGTARGGILVAIAAKHKLPVYFIGVGEGVDDLEPFEAADFASAIAG 526 >gi|312114981|ref|YP_004012577.1| signal recognition particle-docking protein FtsY [Rhodomicrobium vannielii ATCC 17100] gi|311220110|gb|ADP71478.1| signal recognition particle-docking protein FtsY [Rhodomicrobium vannielii ATCC 17100] Length = 409 Score = 336 bits (861), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 161/303 (53%), Positives = 221/303 (72%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + W+++L +G TS KL EGIT + + R+LDD EELEDLLI+SD+G+AV+ +++ L Sbjct: 106 VGWLQRLKQGLTKTSSKLTEGITGVFTKRKLDDDTLEELEDLLIQSDLGLAVSARVIAAL 165 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 RY D+S + V ++ + K+L P+++P D S +P+V+L+VGVNG GKTT IGK Sbjct: 166 KKARYNSDISPEEVRAILAAEVEKVLGPVAQPLEIDTSKKPYVVLMVGVNGTGKTTTIGK 225 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K+ ++ GLKVMLAAGDTFR+AAI+QLK+W +RT A V G+DAA LA++A +A+ Sbjct: 226 YAKQFTEQGLKVMLAAGDTFRAAAIEQLKVWGERTGAPVVSGAQGADAAGLAFDALTRAK 285 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + D+LIIDTAGRL N + LMA + K+IRV++++DP APHSVL LDATTGQNAL QVE Sbjct: 286 KEGADLLIIDTAGRLQNKTGLMAELEKIIRVIRKVDPEAPHSVLLTLDATTGQNALSQVE 345 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F AG TGLIMTK+DGTARGG L+ I H +PV+ +GVGE +DL+ F A+DF+ I Sbjct: 346 IFGKTAGVTGLIMTKLDGTARGGILVAIAAKHGLPVHAIGVGESASDLQAFSAQDFARAI 405 Query: 311 TGC 313 G Sbjct: 406 AGV 408 >gi|90421123|ref|ZP_01229025.1| cell division protein FtsY [Aurantimonas manganoxydans SI85-9A1] gi|90334615|gb|EAS48395.1| cell division protein FtsY [Aurantimonas manganoxydans SI85-9A1] Length = 362 Score = 334 bits (857), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 161/303 (53%), Positives = 219/303 (72%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + W+++L +G A +S +L I I + RRLD+ ++ ED+LI++D+GV A KI + L Sbjct: 56 VPWLQRLREGLARSSTQLTGSIGAIFTKRRLDEDTLQDFEDVLIQADLGVETALKITDRL 115 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 R+ +++S Q V ++E I K L P++ P D + +PHVILVVGVNG GKTT IGK Sbjct: 116 SEGRFGREISGQDVRTILAEEIEKALDPVALPLELDLAKKPHVILVVGVNGTGKTTTIGK 175 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K++ GLKV L AGDTFR+AA++QLKIW +RT ++ V IG+DAA+LAYE + +A Sbjct: 176 LAAKLTRGGLKVTLCAGDTFRAAAVEQLKIWGERTQSEVVAKAIGADAASLAYEGYDRAV 235 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DVLIIDTAGRL N + LMA + K++RVL++ +P APH+VL LDATTGQNA+ QVE Sbjct: 236 ENGSDVLIIDTAGRLQNKTELMAELEKIVRVLQKREPDAPHTVLLTLDATTGQNAMNQVE 295 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F VAG GL+MTK+DG+ARGG L+ I ++PVYF+GVGEGI+DLEPF AKDF+A I Sbjct: 296 IFRNVAGVNGLVMTKLDGSARGGILVAIAAKFRLPVYFVGVGEGIDDLEPFKAKDFAAAI 355 Query: 311 TGC 313 G Sbjct: 356 AGT 358 >gi|319409458|emb|CBI83107.1| cell division protein [Bartonella schoenbuchensis R1] Length = 407 Score = 334 bits (856), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 159/301 (52%), Positives = 227/301 (75%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 +W +L KG + +S +L + + + ++LD+ +ELE++LI++D+GV A +I + L Sbjct: 104 AWFERLKKGLSLSSQQLSDSLGALFIKKKLDEDTLQELENILIQADLGVETATRITDILA 163 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + RY KD+S+ + +++ I K+L P++ P D SH+PHVIL+VGVNG GKTT IGKL Sbjct: 164 SSRYEKDLSLDDLYTIMADEIKKVLEPVAIPLELDLSHKPHVILLVGVNGTGKTTTIGKL 223 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K+++ GLK+ LAAGDTFR+AAI+QL IW +RT A+ + +++G+DAA+LA++A+++A+ Sbjct: 224 AAKLAEGGLKITLAAGDTFRAAAIEQLHIWGERTGANVISTKLGADAASLAFDAYEKAKK 283 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 ++ DVLIIDTAGRL N S LM + K+IRVLK+ +P APH+VLQ LDATTGQNAL QV++ Sbjct: 284 EESDVLIIDTAGRLQNKSELMDELAKIIRVLKKHNPQAPHTVLQTLDATTGQNALNQVDI 343 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 FH VAG GL+MTK+DGTARGG LI I +K+PVYF+G+GE I DLEPF A DF+ I Sbjct: 344 FHNVAGVNGLVMTKLDGTARGGILIAIANKYKLPVYFIGIGEKIEDLEPFSASDFAKAIV 403 Query: 312 G 312 G Sbjct: 404 G 404 >gi|121602701|ref|YP_988356.1| signal recognition particle-docking protein FtsY [Bartonella bacilliformis KC583] gi|120614878|gb|ABM45479.1| signal recognition particle-docking protein FtsY [Bartonella bacilliformis KC583] Length = 387 Score = 333 bits (853), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 158/307 (51%), Positives = 221/307 (71%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 V + ++W +L G + +S +L I + + R+L+ +ELED+LI++D+GV A Sbjct: 78 VEQKEVAWFERLKHGLSRSSQQLGGSIGALFTKRKLNADTLQELEDILIQADLGVETASH 137 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 I + L + RY K++S+ + V++ I K+L P++ P D S++PHVIL VGVNG GKT Sbjct: 138 ITDILSSGRYGKNLSLDDIHTIVADEIKKVLEPVAIPLELDLSYKPHVILFVGVNGTGKT 197 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT A V ++ G+DAA+LA+EA Sbjct: 198 TTIGKLAAKLTSNGLKVMLAAGDTFRAAAIEQLHIWGERTGAPVVSTQSGADAASLAFEA 257 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 +++A+ DVLIIDTAGRL N + LM + K+IRVL++ DP APH++LQ LDATTGQNA Sbjct: 258 YEKAKKANNDVLIIDTAGRLQNKTELMDELAKIIRVLRKHDPQAPHTILQTLDATTGQNA 317 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QV++F +AG GL+MTK+DGTARGG L+ + +K+PVYF+G+GE DLEPF A D Sbjct: 318 LNQVDIFRNIAGVNGLVMTKLDGTARGGILVALAAKYKLPVYFIGIGENTEDLEPFSASD 377 Query: 306 FSAVITG 312 F+ ITG Sbjct: 378 FAQAITG 384 >gi|49474822|ref|YP_032864.1| cell division protein ftsY [Bartonella quintana str. Toulouse] gi|49240326|emb|CAF26808.1| Cell division protein ftsY [Bartonella quintana str. Toulouse] Length = 407 Score = 332 bits (850), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 156/307 (50%), Positives = 219/307 (71%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 V + +W R+L KG A +S +L E I ++ +LD ++LED+LI++D+GV A Sbjct: 98 VEQKKTAWFRRLQKGLALSSQRLSESIGELFVKEKLDKDTLQKLEDILIQADLGVETAAH 157 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 I + + + RY K +S + ++ I K+L P++ P D +H+PHVIL+VGVNG GKT Sbjct: 158 ITDTIASSRYEKSLSPDNIHTIMANEIEKILEPVAIPLELDLNHKPHVILLVGVNGTGKT 217 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+ K++ GLKVMLAA D FR+AAI+QL IW++R A V +++G+DAA+LA++A Sbjct: 218 TTIGKLAAKLTKGGLKVMLAACDMFRAAAIEQLHIWSERIGAPVVSTKLGADAASLAFDA 277 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 +++A+ DVLIIDTAGRL N + LM + K+IRVL + +PHAPH++LQ LDATTGQNA Sbjct: 278 YEKAKKANSDVLIIDTAGRLQNKTELMDELAKIIRVLGKHNPHAPHTILQTLDATTGQNA 337 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QVE+F +AG GL+MTK+DGTARGG L+ I +K+PVYF+G+GE I DL+PF A D Sbjct: 338 LNQVEIFRDIAGVNGLVMTKLDGTARGGILVAIAAKYKLPVYFIGIGEDIEDLQPFSASD 397 Query: 306 FSAVITG 312 F+ I G Sbjct: 398 FAKTIAG 404 >gi|49476311|ref|YP_034352.1| cell division protein ftsY [Bartonella henselae str. Houston-1] gi|49239119|emb|CAF28423.1| Cell division protein ftsY [Bartonella henselae str. Houston-1] Length = 416 Score = 332 bits (850), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 157/307 (51%), Positives = 219/307 (71%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 V E +W +L KG A +S +L + I ++ +LD +ELED+LI++D+GV A Sbjct: 107 VEQEKRAWFGRLKKGLALSSQRLSKSIGEVFVKEKLDKDKLQELEDILIQADLGVETATH 166 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 I + L + RY K++S V ++ I K+L P++ P D +H+PHVIL+VGVNG GKT Sbjct: 167 ITDTLASSRYKKNLSPDDVHSIIANEIEKVLKPVAIPLELDLNHKPHVILLVGVNGTGKT 226 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+ K++ GLKVMLAAGDTFR+AAI+QL IW +R A + +++G+DAA+LA++A Sbjct: 227 TTIGKLAAKLTKGGLKVMLAAGDTFRAAAIEQLHIWGERIGAPVISTKLGADAASLAFDA 286 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 +++A+ DVLIIDTAGRL N + LM + K+IRVL + +P APH++LQ LDATTGQNA Sbjct: 287 YEKAKKANSDVLIIDTAGRLQNKTELMDELAKIIRVLGKHNPQAPHTILQTLDATTGQNA 346 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QV++F +AG GL+MTK+DGTARGG L+ I +K+PVYF+G+GE I DL+PF A D Sbjct: 347 LNQVDIFRDIAGVNGLVMTKLDGTARGGILVAIAAKYKLPVYFIGIGENIEDLQPFSASD 406 Query: 306 FSAVITG 312 F+ I G Sbjct: 407 FAKTIAG 413 >gi|240851394|ref|YP_002972797.1| cell division protein FtsY [Bartonella grahamii as4aup] gi|240268517|gb|ACS52105.1| cell division protein FtsY [Bartonella grahamii as4aup] Length = 417 Score = 329 bits (844), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 157/312 (50%), Positives = 223/312 (71%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 +S V + ++W +L K + +S +L I+D+ R+LD+ +E ED+LI++D+GV Sbjct: 103 LSEPSVEQKKIAWFGRLKKSLSLSSQRLSGSISDLFVKRKLDEDTLQEFEDILIQADLGV 162 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 A +I L + RY KD+S + V++ + K+L P++ P D S++PHVIL+VGVN Sbjct: 163 ETATRITNTLASSRYGKDLSPDDIHTIVADEVKKVLEPVAIPLELDLSYKPHVILLVGVN 222 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+ K++ GLKVMLAAGDTFR+AAI+QL IW RT + + +++G+DAA+ Sbjct: 223 GTGKTTTIGKLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGKRTDSPVISTKLGADAAS 282 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LA++A+++A+ DVLIIDTAGRL N S LM + K+IRVLK+ P APH++LQ LDAT Sbjct: 283 LAFDAYEKAKKANSDVLIIDTAGRLQNKSELMDELAKIIRVLKKHTPQAPHTILQTLDAT 342 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNAL QV++F +AG GL+MTK+DG+ARGG L+ I +K+PVYF+G+GE I DL+P Sbjct: 343 TGQNALNQVKIFRDIAGVNGLVMTKLDGSARGGILVAIAAKYKLPVYFIGIGENIEDLQP 402 Query: 301 FVAKDFSAVITG 312 F A DF+ I G Sbjct: 403 FSASDFAETIAG 414 >gi|319407865|emb|CBI81518.1| cell division protein [Bartonella sp. 1-1C] Length = 413 Score = 328 bits (840), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 153/312 (49%), Positives = 223/312 (71%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 +S + + +W +L KG + +S +L + I + ++LD+ +ELED+LI++D+G+ Sbjct: 99 LSTLTIEQKKAAWFERLKKGLSRSSQQLSDSIGTLFVKQKLDENTLQELEDVLIQADLGI 158 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 +I++ L T+ Y K++S + + V++ I K+L P++ P D +H+PHVIL+VGVN Sbjct: 159 ETTTRIIDILSTRYYEKNLSPKDIYAIVTDEIKKVLEPIAFPLEIDLNHKPHVILLVGVN 218 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+ K++ GLKVML AGDTFR+AA++QL IW +RT A +++G+DAA+ Sbjct: 219 GTGKTTTIGKLAAKLTMGGLKVMLVAGDTFRAAAVEQLHIWGERTKAPVFSTKLGADAAS 278 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LA++A+++A+ + DVL+IDTAGRL N LM + K+IRVL + +P APH+VLQ LDA+ Sbjct: 279 LAFDAYEKAKKEGYDVLLIDTAGRLQNKIELMDELAKIIRVLGKHNPQAPHTVLQTLDAS 338 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNAL QV +F +AG GL+MTK+DGTARGG L+ I HKIPV+F+GVGE + DLEP Sbjct: 339 TGQNALNQVNVFRDIAGVNGLVMTKLDGTARGGILVAIASKHKIPVHFIGVGENVEDLEP 398 Query: 301 FVAKDFSAVITG 312 F A DF+ I G Sbjct: 399 FSASDFAEAIIG 410 >gi|319404905|emb|CBI78506.1| cell division protein [Bartonella rochalimae ATCC BAA-1498] Length = 413 Score = 327 bits (838), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 152/307 (49%), Positives = 219/307 (71%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 V + +W +L KG + +S +L + I + ++LD+ +ELED+LI++D+G+ + Sbjct: 104 VEQKKAAWFERLKKGLSRSSQQLSDSIGTLFVKKKLDENTLQELEDILIQADLGIETTTR 163 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 I++ L T+ Y K++S + + V+ I K+L P++ P D +H+PHVIL+VGVNG GKT Sbjct: 164 IIDILSTRYYEKNLSPKDIYTIVTNEIKKVLEPIAFPLEIDLNHKPHVILLVGVNGTGKT 223 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+ K++ GLKVML AGDTFR+AA++QL IW +R A +++G+DAA+LA++A Sbjct: 224 TTIGKLAAKLTMGGLKVMLVAGDTFRAAAVEQLHIWGERAKAPVFSTKLGADAASLAFDA 283 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 +++A+ + DVL+IDTAGRL N LM + K+IRVL + +P APH+VLQ LDA+TGQNA Sbjct: 284 YEKAKKENYDVLLIDTAGRLQNKIELMDELAKIIRVLGKHNPQAPHTVLQTLDASTGQNA 343 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QV +F +AG GL+MTK+DGTARGG L+ I HKIPV+F+GVGE + DLEPF A D Sbjct: 344 LNQVNVFRDIAGVNGLVMTKLDGTARGGILVAIASKHKIPVHFIGVGENVEDLEPFSASD 403 Query: 306 FSAVITG 312 F+ I G Sbjct: 404 FAEAIIG 410 >gi|85713492|ref|ZP_01044482.1| cell division transporter substrate-binding protein FtsY [Nitrobacter sp. Nb-311A] gi|85699396|gb|EAQ37263.1| cell division transporter substrate-binding protein FtsY [Nitrobacter sp. Nb-311A] Length = 315 Score = 326 bits (836), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 157/302 (51%), Positives = 216/302 (71%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW R+L+ G TS L + D+++ R+LD + +++ED+L+R+D+G AVA++I E + Sbjct: 12 SWWRRLSGGLKRTSTSLGTAVADLVTKRKLDRAMLDDIEDVLLRADLGAAVAERIAEAVG 71 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 RY K +S V V+ + K+L P+++P D + P VILVVGVNG GKTT IGKL Sbjct: 72 EGRYDKAISADEVKAVVATEVEKVLAPVARPLVIDGTFTPFVILVVGVNGSGKTTTIGKL 131 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K+S G KVM+AAGDTFR+AAI+QLK+W +RT + + E GSD+A+LA+ A A+ Sbjct: 132 AAKLSAEGRKVMMAAGDTFRAAAIEQLKVWGERTGSPVIAGEQGSDSASLAFNALTAARN 191 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +K DVL+IDTAGRL N + LM + KM+RV++R+D APH VL VLDAT GQNAL QVE Sbjct: 192 EKRDVLLIDTAGRLQNKAELMNELEKMVRVIRRVDAAAPHVVLLVLDATVGQNALSQVEA 251 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 FH AG TGL+MTK+DGTARGG L+ + HK+PV+F+GVGEG++DL PF A+DF+ + Sbjct: 252 FHRTAGVTGLVMTKLDGTARGGILVALAEKHKLPVHFIGVGEGVDDLAPFTARDFARAVA 311 Query: 312 GC 313 G Sbjct: 312 GI 313 >gi|75674514|ref|YP_316935.1| cell division transporter substrate-binding protein FtsY [Nitrobacter winogradskyi Nb-255] gi|74419384|gb|ABA03583.1| signal recognition particle-docking protein FtsY [Nitrobacter winogradskyi Nb-255] Length = 315 Score = 325 bits (832), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 158/313 (50%), Positives = 218/313 (69%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 MS+ SW R+L+ G TS L + D+++ R+LD + +++ED+L+R+D+G Sbjct: 1 MSDSSEDQPKQSWWRRLSGGLKRTSASLGTAVADLVTKRKLDRAMLDDIEDVLLRADLGT 60 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 AVA++I E + RY K +S V V+ + K+L P+++P D + +P VILVVGVN Sbjct: 61 AVAERIAEAVGEGRYDKAISADEVKAVVATEVEKVLAPVARPLIIDETVKPFVILVVGVN 120 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+ K+S G KVM+AAGDTFR+AAIDQLK+W +RT + + GSD+A+ Sbjct: 121 GSGKTTTIGKLAAKLSAEGRKVMMAAGDTFRAAAIDQLKVWGERTGSPVIAGAQGSDSAS 180 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LA+ A +A+ + DVL+IDTAGRL N + LM + KM+RV++R+D APH VL VLDAT Sbjct: 181 LAFNALTEARNQNSDVLLIDTAGRLQNKAELMNELEKMVRVIRRVDSSAPHVVLLVLDAT 240 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQNAL QVE FH AG TGL+MTK+DGTARGG L+ + HK+PV+F+GVGEG++DL P Sbjct: 241 VGQNALSQVEAFHRTAGVTGLVMTKLDGTARGGILVALAEKHKLPVHFIGVGEGVDDLAP 300 Query: 301 FVAKDFSAVITGC 313 F A DF+ + G Sbjct: 301 FTAGDFARAVAGI 313 >gi|27375584|ref|NP_767113.1| cell division protein [Bradyrhizobium japonicum USDA 110] gi|27348721|dbj|BAC45738.1| bll0473 [Bradyrhizobium japonicum USDA 110] Length = 315 Score = 323 bits (829), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 157/313 (50%), Positives = 219/313 (69%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 M++ LSW R+L+ G TS L + D+++ R+LD + +++ED+L+R+D+G Sbjct: 1 MNDTTSDPPKLSWWRRLSNGLKRTSSSLGTAVADLVTKRKLDRAMLDDIEDVLLRADLGT 60 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 +VA +I + + T RY K +S V V+ + K+L P++KP D + +P VILVVGVN Sbjct: 61 SVAVRIADAVGTGRYDKAISADEVKDVVATEVEKVLAPVAKPLEIDAARKPFVILVVGVN 120 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKLS+K + G KVMLAAGDTFR+AAI+QLK+W +RT + GSD+A+ Sbjct: 121 GSGKTTTIGKLSQKFASEGRKVMLAAGDTFRAAAIEQLKVWGERTKTPVIAGTQGSDSAS 180 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LA+ A A+ +K DVL+IDTAGRL N + LM + K++RV++++D APH+VL VLDAT Sbjct: 181 LAFNALTAAKEQKTDVLLIDTAGRLQNKAELMNELEKVVRVIRKVDDTAPHAVLLVLDAT 240 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQNAL QVE FH AG TGL+MTK+DGTARGG L+ + K+PV+F+GVGEG++DL P Sbjct: 241 VGQNALSQVEAFHRTAGVTGLVMTKLDGTARGGILVALAEKFKLPVHFIGVGEGVDDLAP 300 Query: 301 FVAKDFSAVITGC 313 F A+DF+ I G Sbjct: 301 FTARDFARAIAGI 313 >gi|154244370|ref|YP_001415328.1| signal recognition particle-docking protein FtsY [Xanthobacter autotrophicus Py2] gi|154158455|gb|ABS65671.1| signal recognition particle-docking protein FtsY [Xanthobacter autotrophicus Py2] Length = 529 Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 157/300 (52%), Positives = 217/300 (72%), Gaps = 1/300 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W R L G A T+ L +GITD++S R+LD EELED+LIR+D+GV + +IVE + Sbjct: 229 WSR-LASGLARTASSLGQGITDLVSKRKLDADTLEELEDVLIRADLGVETSMRIVETVGK 287 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 R+ K +S + V ++E + ++L+P+++P D +H+P V+L+VGVNG GKTT IGKL+ Sbjct: 288 GRHDKMISPEEVKRLIAEEVERILIPVAQPLVVDTAHKPFVVLMVGVNGSGKTTTIGKLA 347 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 + G KV+LAAGDTFR+AAI+QLK+W RT A + E GSDAA +A+EA +A+A Sbjct: 348 AQWRTEGKKVVLAAGDTFRAAAIEQLKVWGTRTGATVIAREQGSDAAGVAHEAVVEARAA 407 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 D+L++DTAGRL N + LMA + K++RV+K+L+P APH+VL VLDAT GQNAL QVE F Sbjct: 408 GADILMVDTAGRLQNRTELMAELEKVVRVIKKLEPSAPHAVLLVLDATVGQNALSQVEAF 467 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +AG TG++MTK+DGTARGG L+ I HK+PV+ +GVGE DL+PF A+DF+ I G Sbjct: 468 TRIAGVTGMVMTKLDGTARGGILVAIAAKHKLPVHLIGVGEAAEDLQPFAARDFARAIAG 527 >gi|319899511|ref|YP_004159608.1| cell division protein [Bartonella clarridgeiae 73] gi|319403479|emb|CBI77059.1| cell division protein [Bartonella clarridgeiae 73] Length = 387 Score = 323 bits (827), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 154/312 (49%), Positives = 220/312 (70%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 +S V + +W +L KG + +S +L + I + + ++LD+ +ELED+LI++D G+ Sbjct: 73 LSTSTVEQKKAAWFERLKKGLSLSSQQLSDSIGSLFAKKKLDENTLQELEDILIQADFGI 132 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 +I++ L T RY K++S + + V+ I K+L P++ P D +H+PHVIL+VGVN Sbjct: 133 ETTTRIIDILATGRYEKNLSPKDIYTIVTNEIKKVLEPIAFPLEIDLNHKPHVILLVGVN 192 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+ K++ GLK+ML AGDTFR+AAI+QL IW +RT A + S++ +D A+ Sbjct: 193 GTGKTTTIGKLAAKLTAGGLKIMLVAGDTFRAAAIEQLHIWGERTKAPVISSKLAADPAS 252 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 L ++A+K+A+ + DVLIIDTAGRL N LM + K+IRVL + +P APH+VLQ LDAT Sbjct: 253 LVFDAYKKAKKEGSDVLIIDTAGRLQNKIELMDELAKIIRVLGKHNPQAPHTVLQTLDAT 312 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNAL QV +F +AG GL+MTK+DGTARGG L+ I HK+PV+F+G+GE + DLEP Sbjct: 313 TGQNALNQVNIFRDIAGVNGLVMTKLDGTARGGILVAIASKHKLPVHFIGIGENVEDLEP 372 Query: 301 FVAKDFSAVITG 312 F A DF+ I G Sbjct: 373 FSASDFAEAIIG 384 >gi|300024820|ref|YP_003757431.1| signal recognition particle-docking protein FtsY [Hyphomicrobium denitrificans ATCC 51888] gi|299526641|gb|ADJ25110.1| signal recognition particle-docking protein FtsY [Hyphomicrobium denitrificans ATCC 51888] Length = 390 Score = 322 bits (824), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 156/301 (51%), Positives = 210/301 (69%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W +KL G TS KL GITD+ S R+LD ++LEDLLI++D+G+A +I + + Sbjct: 90 WFQKLKSGLGKTSAKLTSGITDLFSKRKLDAATLDDLEDLLIQADLGIATTGRITDAIGK 149 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 R+ K +S V +S + ++L P++KP D + +PHVI++VGVNG GKTT IGKL+ Sbjct: 150 GRFEKGISADEVRAILSSEVERVLKPVAKPLEVDAARKPHVIMMVGVNGTGKTTTIGKLA 209 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 +K+ G V+LAAGDTFR+AAIDQLK+W +RT V ++G DA+ LA++A KQAQ Sbjct: 210 QKLKAEGKSVVLAAGDTFRAAAIDQLKVWGERTGCPVVARQVGEDASGLAFDALKQAQGT 269 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 DVL++DTAGRL N LM + K+IRVLK+LD APH V+ VLDATTGQNAL+QVE+F Sbjct: 270 GADVLLLDTAGRLQNKQALMEELEKVIRVLKKLDSTAPHDVILVLDATTGQNALQQVEVF 329 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 AG TGL+MTK+DGTARGG L+ I +PV+ +GVGEG +DL+PF A +F+ I G Sbjct: 330 RDRAGVTGLVMTKLDGTARGGILVAIADKFGLPVHAIGVGEGADDLQPFEAAEFARAIAG 389 Query: 313 C 313 Sbjct: 390 T 390 >gi|319406390|emb|CBI80031.1| cell division protein [Bartonella sp. AR 15-3] Length = 410 Score = 320 bits (821), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 153/300 (51%), Positives = 216/300 (72%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W +L KG + +S +L + I + ++LD+ +ELED+LI++D+G+ +I++ L T Sbjct: 108 WFERLKKGLSLSSQQLSDSIGTLFVKKKLDENTLQELEDILIQADLGIETTTRIIDILAT 167 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 RY K+ S + + V++ I K+L P++ P D +H+PHVIL+VGVNG GKTT IGKL+ Sbjct: 168 SRYEKNFSSKDIYTIVTDEIKKVLEPVAFPLEIDLNHKPHVILLVGVNGTGKTTTIGKLA 227 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 K++ GLKVML AGDTFR+AAI+QL IW +RT A + ++G+DAA+LA++A+ +A+ + Sbjct: 228 AKLTAGGLKVMLVAGDTFRAAAIEQLHIWGERTKAPVISGKLGADAASLAFDAYGKAKKE 287 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 DVLIIDTAGRL N LM + K+IRVL + +P APH+VLQ LDATTGQNAL QV +F Sbjct: 288 NSDVLIIDTAGRLQNKIELMDELAKIIRVLGKHNPQAPHTVLQTLDATTGQNALNQVNVF 347 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +AG GL+MTK+DG+ARGG L+ I HK+PV+F+G+GE + DLEPF A DF+ I G Sbjct: 348 RDIAGVNGLVMTKLDGSARGGILVAIASKHKLPVHFIGIGENVEDLEPFSASDFAEAIIG 407 >gi|92116024|ref|YP_575753.1| signal recognition particle-docking protein FtsY [Nitrobacter hamburgensis X14] gi|91798918|gb|ABE61293.1| signal recognition particle-docking protein FtsY [Nitrobacter hamburgensis X14] Length = 315 Score = 320 bits (821), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 158/312 (50%), Positives = 217/312 (69%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 MS+ SW R+L+ G TS L + D+++ R+LD + +++ED+L+R+D+G Sbjct: 1 MSDSTDDKPKQSWWRRLSGGLKRTSSSLGTAVADLVTKRKLDRAMLDDIEDVLLRADLGT 60 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 AVA++I + RY K +S V V+ + K+L ++KP D +H+P VILVVGVN Sbjct: 61 AVAERIAAAVGEGRYDKAISADEVKAVVATEVEKVLAAVAKPLVVDETHKPFVILVVGVN 120 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+ K+S G KVM+AAGDTFR+AAI+QL++W +RT + V GSDAA+ Sbjct: 121 GSGKTTTIGKLAAKLSAEGRKVMMAAGDTFRAAAIEQLQVWGERTGSPVVAGAQGSDAAS 180 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LA+ A A+ + DVL+IDTAGRL N + LM + K++RV++R+D APH+VL VLDAT Sbjct: 181 LAFNALTAARDDRRDVLLIDTAGRLQNKAELMNELEKVVRVIRRVDAAAPHAVLLVLDAT 240 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQNAL QVE FH AG TGL+MTK+DGTARGG L+ + HK+PV+F+GVGEG++DL P Sbjct: 241 VGQNALSQVEAFHRTAGVTGLVMTKLDGTARGGILVALAEKHKLPVHFIGVGEGVDDLAP 300 Query: 301 FVAKDFSAVITG 312 F A DF+ I G Sbjct: 301 FTAHDFAKAIAG 312 >gi|39933286|ref|NP_945562.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris CGA009] gi|192288638|ref|YP_001989243.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris TIE-1] gi|39652911|emb|CAE25653.1| putative cell division protein FtsY [Rhodopseudomonas palustris CGA009] gi|192282387|gb|ACE98767.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris TIE-1] Length = 315 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 157/302 (51%), Positives = 210/302 (69%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW R+L+ G TS + +++ +S R+LD + EE+ED+L+R+D+G VA +I + + Sbjct: 11 SWWRRLSSGLKRTSSSIGTALSEFVSKRKLDRAMLEEIEDVLLRADLGTEVAARIAKAVG 70 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 RY K +S V V+ + K+L P+++P D ++P VIL+VGVNG GKTT IGKL Sbjct: 71 EGRYDKMISASDVKEIVAAEVEKVLAPVAQPLEVDAGNKPFVILMVGVNGSGKTTTIGKL 130 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 S + + G KVMLAAGDTFR+AAIDQLK+W DRT V GSDAA LA+ A A+ Sbjct: 131 SARFASEGHKVMLAAGDTFRAAAIDQLKVWGDRTGTPVVAGAQGSDAAGLAFNALTAAKE 190 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + DVL+IDTAGRL N + LM+ + K++RV+K++D APH+VL VLDAT GQNAL QVE Sbjct: 191 QGRDVLLIDTAGRLQNRTELMSELEKVVRVIKKVDATAPHAVLLVLDATVGQNALSQVEA 250 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F AG TGL+MTK+DGTARGG L+ I HK+PV+F+GVGEG+ DL PF A+DF+ I Sbjct: 251 FTKTAGVTGLVMTKLDGTARGGILVAIAEKHKLPVHFIGVGEGVEDLAPFTARDFAKAIA 310 Query: 312 GC 313 G Sbjct: 311 GT 312 >gi|148251983|ref|YP_001236568.1| signal recognition particle-docking protein FtsY [Bradyrhizobium sp. BTAi1] gi|146404156|gb|ABQ32662.1| signal recognition particle-docking protein FtsY [Bradyrhizobium sp. BTAi1] Length = 315 Score = 320 bits (820), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 156/315 (49%), Positives = 220/315 (69%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 M++ + LSW R+L+ G TS L + D+++ R+LD + +++ED+L+R+D+G Sbjct: 1 MNDTTSETPKLSWWRRLSAGLKRTSGALGTAVADLVTKRKLDRAMLDDIEDVLLRADLGT 60 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 VA +I E + RY K +S V V+ + K+L P++KP + SH+P VILVVGVN Sbjct: 61 QVAARIAEAVGAGRYDKAISADEVKAVVATEVEKVLSPVAKPLVVEASHKPFVILVVGVN 120 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+ K + G +VMLAAGDTFR+AAI+QLK+W +RT A + GSD+A+ Sbjct: 121 GSGKTTTIGKLAAKFASDGKQVMLAAGDTFRAAAIEQLKVWGERTKAPVIAGAQGSDSAS 180 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LA+ A A+ + D+L+IDTAGRL N + LM + K++RV++++D APH+VL VLDAT Sbjct: 181 LAFTAITAAKEQARDILLIDTAGRLQNKAELMNELEKVVRVIRKVDASAPHAVLLVLDAT 240 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQNAL QVE FH AG TGL+MTK+DGTARGG L+ + K+PV+F+GVGEG++DL+P Sbjct: 241 VGQNALSQVEAFHRTAGVTGLVMTKLDGTARGGILVALSEKFKLPVHFIGVGEGVDDLQP 300 Query: 301 FVAKDFSAVITGCLD 315 F A+DF+ I G D Sbjct: 301 FAARDFARAIAGIDD 315 >gi|146337532|ref|YP_001202580.1| cell division transporter substrate-binding protein FtsY [Bradyrhizobium sp. ORS278] gi|146190338|emb|CAL74334.1| Cell division transporter substrate-binding protein FtsY (Signal recognition particle receptor) [Bradyrhizobium sp. ORS278] Length = 315 Score = 318 bits (816), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 155/315 (49%), Positives = 218/315 (69%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 M++ + SW R+L+ G TS L + D+++ R+LD + +++ED+L+R+D+G Sbjct: 1 MNDTTSETPKRSWWRRLSDGLKRTSGALGTAVADLVTKRKLDRAMLDDIEDVLLRADLGT 60 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 VA +I E + RY K +S V V+ + K+L P++KP + H+P VILVVGVN Sbjct: 61 QVAARIAEAVGAGRYDKAISADEVKAVVATEVEKVLSPVAKPLTIEPGHKPFVILVVGVN 120 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL++K + G VMLAAGDTFR+AAI+QLK+W +RT A + GSD+A+ Sbjct: 121 GSGKTTTIGKLAQKFASEGKHVMLAAGDTFRAAAIEQLKVWGERTKAPVIAGAQGSDSAS 180 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LA+ A A+ + D+L+IDTAGRL N + LM + K++RV++++D APH+VL VLDAT Sbjct: 181 LAFNAITAAKEQGRDILLIDTAGRLQNKAELMNELEKVVRVIRKVDASAPHAVLLVLDAT 240 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQNAL QVE FH AG TGL+MTK+DGTARGG L+ + K+PV+F+GVGEG++DL+P Sbjct: 241 VGQNALSQVEAFHRTAGVTGLVMTKLDGTARGGILVALSEKFKLPVHFIGVGEGVDDLQP 300 Query: 301 FVAKDFSAVITGCLD 315 F AKDF+ I G D Sbjct: 301 FAAKDFARAIAGIED 315 >gi|218458897|ref|ZP_03498988.1| cell division protein [Rhizobium etli Kim 5] Length = 235 Score = 318 bits (814), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 153/230 (66%), Positives = 189/230 (82%), Gaps = 4/230 (1%) Query: 87 DVSEL----IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 DVS + I K+L P++KP D SH+PHVILVVGVNG GKTT IGKL+ K+S AGLKV Sbjct: 3 DVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGVNGTGKTTTIGKLAAKLSGAGLKV 62 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 MLAAGDTFR+AAI+QLKIWA+RT ++FV +++G+DAA LAY+AF+QA+AKK DVLI+DTA Sbjct: 63 MLAAGDTFRAAAIEQLKIWAERTKSEFVGTKLGADAAGLAYDAFEQAKAKKCDVLIVDTA 122 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNAL QVE+F VAG GLI Sbjct: 123 GRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNALSQVEIFRNVAGVNGLI 182 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 MTK+DGTARGG L+ I +K+PVYF+GVGEG++DLEPF A+DF+ I G Sbjct: 183 MTKLDGTARGGILVAISAKYKLPVYFIGVGEGVDDLEPFEAEDFAHAIAG 232 >gi|299133082|ref|ZP_07026277.1| signal recognition particle-docking protein FtsY [Afipia sp. 1NLS2] gi|298593219|gb|EFI53419.1| signal recognition particle-docking protein FtsY [Afipia sp. 1NLS2] Length = 318 Score = 318 bits (814), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 159/301 (52%), Positives = 214/301 (71%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW ++L+ G TS + +TD++S R+LD + E +ED+L+R+D+G VA +I ++ Sbjct: 12 SWWQRLSAGLKRTSGSIGGALTDLVSKRKLDRAMLEGIEDVLLRADLGTEVAARIAAKVG 71 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 RY KDVS Q V V+ + K+L P++KP D S +P VILVVGVNG GKTT IGKL Sbjct: 72 EGRYDKDVSAQDVQEIVAAEVEKVLAPVAKPLVIDESQKPFVILVVGVNGSGKTTTIGKL 131 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K++ G +VMLAAGDTFR+AAI+QLK+W +RT V GSD+A+LA++A +A+ Sbjct: 132 AAKLTAEGRRVMLAAGDTFRAAAIEQLKVWGERTGVPVVARAHGSDSASLAFDAASEAKT 191 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 DVL+IDTAGRL N + LM + K+ RV++++D APH+VL VLDAT GQNAL QVE Sbjct: 192 DNRDVLLIDTAGRLQNKAELMVELEKVARVIRKVDASAPHAVLLVLDATVGQNALSQVEA 251 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F AG TGL+MTK+DGTARGG L+ I T+K+PV+F+GVGEGI+DL PF A DF+ I Sbjct: 252 FRKTAGVTGLVMTKLDGTARGGILVAISETYKLPVHFIGVGEGIDDLAPFTAHDFALAIA 311 Query: 312 G 312 G Sbjct: 312 G 312 >gi|316931820|ref|YP_004106802.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris DX-1] gi|315599534|gb|ADU42069.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris DX-1] Length = 315 Score = 317 bits (811), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 155/302 (51%), Positives = 209/302 (69%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW R+L+ G TS + +++ +S R+LD + EE+ED+L+R+D+G VA +I + Sbjct: 11 SWWRRLSSGLKRTSSSIGTALSEFVSKRKLDRAMLEEIEDVLLRADLGAEVASRIASAVG 70 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 RY K +S V V+ + K+L P+++P D +P V+L+VGVNG GKTT IGKL Sbjct: 71 EGRYDKMISASDVKEIVAAEVEKVLAPVAQPLVVDAGKKPFVVLMVGVNGSGKTTTIGKL 130 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 S + + G KVMLAAGDTFR+AAIDQLK+W +RT V GSDAA LA+ A A+ Sbjct: 131 SARFASEGHKVMLAAGDTFRAAAIDQLKVWGERTGTPVVAGAQGSDAAGLAFNALTAAKE 190 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + DVL+IDTAGRL N + LM+ + K++RV+K++D APH+VL VLDAT GQNAL QVE Sbjct: 191 QGRDVLLIDTAGRLQNRTELMSELEKVVRVIKKVDATAPHAVLLVLDATVGQNALSQVEA 250 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F AG TGL+MTK+DGTARGG L+ I HK+PV+F+GVGEG++DL PF A+DF+ I Sbjct: 251 FTKTAGVTGLVMTKLDGTARGGILVAIAEKHKLPVHFIGVGEGVDDLSPFTARDFAKAIA 310 Query: 312 GC 313 G Sbjct: 311 GT 312 >gi|323137224|ref|ZP_08072303.1| signal recognition particle-docking protein FtsY [Methylocystis sp. ATCC 49242] gi|322397582|gb|EFY00105.1| signal recognition particle-docking protein FtsY [Methylocystis sp. ATCC 49242] Length = 353 Score = 315 bits (807), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 150/302 (49%), Positives = 212/302 (70%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW +LT G A TS + +G+ DI + R+LD EELED+L+R+D+GV A +I + + Sbjct: 40 SWWSRLTGGLARTSQAISQGVADIFTKRKLDALTLEELEDVLLRADLGVGAAMRITKAVG 99 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 RY KD+ V ++ + +L P++ PF D S +P ++LVVGVNG GKTT I KL Sbjct: 100 KARYEKDIEPDEVRAILAREVEAVLEPVAVPFEIDESKKPFIVLVVGVNGSGKTTTIAKL 159 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K + G KV+LAAGDTFR+AA++QL+IW R A+ V G+DAA LA++A K+A Sbjct: 160 ASKWTGEGKKVVLAAGDTFRAAAVEQLRIWGARLDAEVVAGNEGADAAGLAFDAIKRAGE 219 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D++++DTAGRL N + LMA + K++RV+K+ +P APH+VL VLDAT GQNA++QVE+ Sbjct: 220 SGADIMLMDTAGRLQNRAELMAELEKIVRVMKKAEPEAPHAVLLVLDATVGQNAMQQVEV 279 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F +AG TGL+MTK+DGTARGG L+ I + +P++F+GVGEG +DLEPF A+DF+ I Sbjct: 280 FQRMAGVTGLVMTKLDGTARGGILVAIAEAYGLPIHFIGVGEGQDDLEPFTARDFARAIA 339 Query: 312 GC 313 G Sbjct: 340 GL 341 >gi|296448346|ref|ZP_06890235.1| signal recognition particle-docking protein FtsY [Methylosinus trichosporium OB3b] gi|296254138|gb|EFH01276.1| signal recognition particle-docking protein FtsY [Methylosinus trichosporium OB3b] Length = 346 Score = 315 bits (807), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 151/309 (48%), Positives = 219/309 (70%), Gaps = 1/309 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW +LT G + +S + +GI+D+ + R+LD EELED+L+R+D+G+A AQ+I + Sbjct: 34 SWWERLTGGLSRSSQAIVQGISDLFTKRKLDALTLEELEDVLVRADLGLAAAQRISATVG 93 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 RY K + V ++E + ++L P+++PF D S +P ++LVVGVNG GKTT I KL Sbjct: 94 KARYEKTIGPDEVRAILAEEVERVLAPVARPFELDESKKPFIVLVVGVNGSGKTTTIAKL 153 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K + G KVMLAAGDTFR+AA++QL+ W +R + + G+DAA LA++A K A+ Sbjct: 154 AAKWTAEGRKVMLAAGDTFRAAAVEQLRFWGERLNVSVCYAPEGADAAGLAFDAIKSARE 213 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + D+L++DTAGRL N + LMA + K++RV+K+ +P APH+VL VLDAT GQNA+ QV++ Sbjct: 214 RGSDILLMDTAGRLQNRTELMAELAKIVRVMKKAEPEAPHAVLLVLDATVGQNAVAQVDV 273 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F +AG TGL+MTK+DGTARGG L+ I + +P++F+GVGEG DLEPF A+DF+ I Sbjct: 274 FGKIAGVTGLVMTKLDGTARGGILVAIAEAYGLPIHFIGVGEGAEDLEPFTARDFARAIA 333 Query: 312 GCLDYGEEK 320 G L+ EEK Sbjct: 334 G-LEGDEEK 341 >gi|163852142|ref|YP_001640185.1| signal recognition particle-docking protein FtsY [Methylobacterium extorquens PA1] gi|163663747|gb|ABY31114.1| signal recognition particle-docking protein FtsY [Methylobacterium extorquens PA1] Length = 488 Score = 314 bits (805), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 156/305 (51%), Positives = 206/305 (67%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 SE W +LT G TS L + +T + + R+LD E+LED LI++D GV A ++ Sbjct: 180 SEKQGWWSRLTAGMRRTSSALSDRVTGLFTKRKLDATTLEDLEDALIQADFGVETAARMS 239 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 E + RY K +S V ++ I + L P++ P D + +P+VIL VGVNG GKTT Sbjct: 240 EAVGKGRYEKGISPDEVRAILATEIERALEPVALPIEIDSAKKPYVILTVGVNGAGKTTT 299 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKLS K G VMLAAGDTFR+AAI+QL++W DRT + GSDAA LA++AFK Sbjct: 300 IGKLSLKFKAEGRSVMLAAGDTFRAAAIEQLRVWGDRTGTPVISRAQGSDAAGLAFDAFK 359 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 +A+ DVL+IDTAGRL N + LMA + K++RV+++LDP APHS L VLDAT GQNAL Sbjct: 360 EARENGTDVLLIDTAGRLQNKAGLMAELEKIVRVIRKLDPEAPHSTLLVLDATVGQNALS 419 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 QVE+F A +GL+MTK+DGTARGG L+ + +PV+F+GVGEG+ DLEPF A+DF+ Sbjct: 420 QVELFSQAAPVSGLVMTKLDGTARGGILVALATKFGLPVHFIGVGEGVEDLEPFAARDFA 479 Query: 308 AVITG 312 ITG Sbjct: 480 RAITG 484 >gi|304392647|ref|ZP_07374587.1| cell division protein FtsY [Ahrensia sp. R2A130] gi|303295277|gb|EFL89637.1| cell division protein FtsY [Ahrensia sp. R2A130] Length = 585 Score = 314 bits (805), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 150/302 (49%), Positives = 210/302 (69%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 +W ++ G + +S +L + + + ++LD+ E+LED+L+++D+GV A I + L Sbjct: 278 TWFARMRSGLSRSSNQLTSNVAAVFTKKKLDEETLEQLEDVLLQADLGVETAVAITDALA 337 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +R KD++ V ++ I K L P++ D H PHVILVVGVNG GKTT IGKL Sbjct: 338 DQRMGKDITDLEVREFMAAEIEKTLDPVAAELELDLEHTPHVILVVGVNGSGKTTTIGKL 397 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 S+K+ DAG +L AGDTFR+AAI+QLKIW DRT + ++G+D+A LAY+A+ +A Sbjct: 398 SQKLYDAGFSTLLVAGDTFRAAAIEQLKIWGDRTQSPVAFRDLGADSAGLAYDAYAKALD 457 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + DV+++DTAGRL N + LM + K+IRVLK+ DP APH+VL LDATTGQNAL QVE+ Sbjct: 458 EGQDVMLMDTAGRLQNKTELMDELRKIIRVLKKQDPTAPHTVLLTLDATTGQNALSQVEI 517 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F VAG GL+MTK+DGTARGG ++ + HK+PVYF+GVGE ++DLEPF A+DF+ I Sbjct: 518 FKEVAGVNGLVMTKLDGTARGGIMVSLAAKHKLPVYFIGVGEQVDDLEPFEARDFARSIA 577 Query: 312 GC 313 G Sbjct: 578 GL 579 >gi|254470691|ref|ZP_05084094.1| signal recognition particle-docking protein FtsY [Pseudovibrio sp. JE062] gi|211959833|gb|EEA95030.1| signal recognition particle-docking protein FtsY [Pseudovibrio sp. JE062] Length = 517 Score = 314 bits (804), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 158/304 (51%), Positives = 217/304 (71%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW ++L G + +S L EGI+ I + R+LD EELED+LI++D+G+ A I + + Sbjct: 211 SWFQRLKAGLSRSSNALTEGISSIFTKRKLDADTLEELEDILIQADLGIDTAIAITDRVS 270 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 RY K++S + V +++ I +L P++KP + + H+PH++L+VGVNG GKTT IGKL Sbjct: 271 DGRYDKEISGEEVRAILADEIESVLEPVAKPLDLNIGHKPHIVLMVGVNGTGKTTTIGKL 330 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 S + + G KVMLAAGDTFR+AA++QLK+W RT A+ V + G+DAA LAY+A A + Sbjct: 331 SSLLHEQGKKVMLAAGDTFRAAAVEQLKVWGQRTGAEVVARDTGADAAGLAYDAVDAALS 390 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 DVL+IDTAGRL N + LM + K+IRV+++ P APH+ L LDATTGQNAL QVE+ Sbjct: 391 NDTDVLLIDTAGRLQNKAELMDELEKIIRVIRKRVPDAPHTTLLTLDATTGQNALSQVEI 450 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F VAG TGL+MTK+DGTARGG L+ I + +PV+F+GVGEG++DLEPF AKDF+A I Sbjct: 451 FGKVAGVTGLVMTKLDGTARGGILVAIARKYGLPVHFIGVGEGVDDLEPFSAKDFAAAIA 510 Query: 312 GCLD 315 G D Sbjct: 511 GKDD 514 >gi|86747488|ref|YP_483984.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris HaA2] gi|86570516|gb|ABD05073.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris HaA2] Length = 315 Score = 314 bits (804), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 154/302 (50%), Positives = 211/302 (69%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW R+L+ G TS + +++ IS R+LD + +E+ED+L+R+D+G VA +I + + Sbjct: 11 SWWRRLSSGLKRTSSSIGTALSEFISKRKLDRAMLDEIEDVLLRADLGTEVATRISDAVG 70 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 RY K +S V V+ + K+L P++KP D + +P V+LVVGVNG GKTT IGKL Sbjct: 71 EGRYDKMISAGDVKEIVAAEVEKVLAPVAKPLVIDRAKKPFVVLVVGVNGSGKTTTIGKL 130 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 S + + G KVM+AAGDTFR+AAI+QLK+W +RT + GSD+A+LA+ A A+ Sbjct: 131 SARYAAEGHKVMMAAGDTFRAAAIEQLKVWGERTGTPVIAGAQGSDSASLAFNALTTAKE 190 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + DVL+IDTAGRL N + LM +GK++RV+K++D APH+VL VLDAT GQNAL QVE Sbjct: 191 QARDVLLIDTAGRLQNRTELMNELGKVVRVIKKVDDTAPHAVLLVLDATVGQNALSQVEA 250 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F AG TGL+MTK+DGTARGG L+ I HK+PV+F+GVGEG+ DL PF A+DF+ I Sbjct: 251 FTKTAGVTGLVMTKLDGTARGGILVAIAEKHKLPVHFIGVGEGVEDLAPFTARDFAQAIA 310 Query: 312 GC 313 G Sbjct: 311 GT 312 >gi|240139474|ref|YP_002963949.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein [Methylobacterium extorquens AM1] gi|240009446|gb|ACS40672.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein [Methylobacterium extorquens AM1] Length = 488 Score = 313 bits (802), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 155/305 (50%), Positives = 206/305 (67%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 SE W +LT G TS L + +T + + R+LD E+LED LI++D GV A ++ Sbjct: 180 SEKQGWWSRLTAGMRRTSSALSDRVTGLFTKRKLDATTLEDLEDALIQADFGVETATRMS 239 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 E + RY K +S V ++ I + L P++ P D + +P+VIL VGVNG GKTT Sbjct: 240 EAVGKGRYEKGISPDEVRAILATEIERALEPVALPIEIDSAKKPYVILTVGVNGAGKTTT 299 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKLS K G VMLAAGDTFR+AAI+QL++W DRT + GSDAA LA++AFK Sbjct: 300 IGKLSLKFKAEGRSVMLAAGDTFRAAAIEQLRVWGDRTGTPVISRAQGSDAAGLAFDAFK 359 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 +A+ DVL+IDTAGRL N + LMA + K++RV+++LDP APH+ L VLDAT GQNAL Sbjct: 360 EARENGTDVLLIDTAGRLQNKAGLMAELEKIVRVIRKLDPEAPHATLLVLDATVGQNALS 419 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 QVE+F A +GL+MTK+DGTARGG L+ + +PV+F+GVGEG+ DLEPF A+DF+ Sbjct: 420 QVELFSQAAPVSGLVMTKLDGTARGGILVALATKFGLPVHFIGVGEGVEDLEPFAARDFA 479 Query: 308 AVITG 312 ITG Sbjct: 480 RAITG 484 >gi|254561888|ref|YP_003068983.1| fused Signal Recognition Particle [Methylobacterium extorquens DM4] gi|254269166|emb|CAX25132.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein [Methylobacterium extorquens DM4] Length = 488 Score = 313 bits (802), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 155/305 (50%), Positives = 206/305 (67%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 SE W +LT G TS L + +T + + R+LD E+LED LI++D GV A ++ Sbjct: 180 SEKQGWWSRLTAGMRRTSSALSDRVTGLFTKRKLDATTLEDLEDALIQADFGVETATRMS 239 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 E + RY K +S V ++ I + L P++ P D + +P+VIL VGVNG GKTT Sbjct: 240 EAVGKGRYEKGISPDEVRAILATEIERALEPVALPIEIDSAKKPYVILTVGVNGAGKTTT 299 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKLS K G VMLAAGDTFR+AAI+QL++W DRT + GSDAA LA++AFK Sbjct: 300 IGKLSLKFKAEGRSVMLAAGDTFRAAAIEQLRVWGDRTGTPVISRAQGSDAAGLAFDAFK 359 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 +A+ DVL+IDTAGRL N + LMA + K++RV+++LDP APH+ L VLDAT GQNAL Sbjct: 360 EARENGTDVLLIDTAGRLQNKAGLMAELEKIVRVIRKLDPEAPHATLLVLDATVGQNALS 419 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 QVE+F A +GL+MTK+DGTARGG L+ + +PV+F+GVGEG+ DLEPF A+DF+ Sbjct: 420 QVELFSQAAPVSGLVMTKLDGTARGGILVALATKFGLPVHFIGVGEGVEDLEPFAARDFA 479 Query: 308 AVITG 312 ITG Sbjct: 480 RAITG 484 >gi|218530901|ref|YP_002421717.1| signal recognition particle-docking protein FtsY [Methylobacterium chloromethanicum CM4] gi|218523204|gb|ACK83789.1| signal recognition particle-docking protein FtsY [Methylobacterium chloromethanicum CM4] Length = 488 Score = 313 bits (801), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 155/305 (50%), Positives = 206/305 (67%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 SE W +LT G TS L + +T + + R+LD E+LED LI++D GV A ++ Sbjct: 180 SEKQGWWSRLTAGMRRTSSALSDRVTGLFTKRKLDATTLEDLEDALIQADFGVETATRMS 239 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 E + RY K +S V ++ I + L P++ P D + +P+VIL VGVNG GKTT Sbjct: 240 EAVGKGRYEKGISPDEVRAILATEIERALEPVALPIEIDSAKKPYVILTVGVNGAGKTTT 299 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKLS K G VMLAAGDTFR+AAI+QL++W DRT + GSDAA LA++AFK Sbjct: 300 IGKLSLKFKAEGRSVMLAAGDTFRAAAIEQLRVWGDRTGTPVISRAQGSDAAGLAFDAFK 359 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 +A+ DVL+IDTAGRL N + LMA + K++RV+++LDP APH+ L VLDAT GQNAL Sbjct: 360 EARENGTDVLLIDTAGRLQNKAGLMAELEKIVRVIRKLDPEAPHATLLVLDATVGQNALS 419 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 QVE+F A +GL+MTK+DGTARGG L+ + +PV+F+GVGEG+ DLEPF A+DF+ Sbjct: 420 QVELFSQAAPVSGLVMTKLDGTARGGILVALATKFGLPVHFIGVGEGVEDLEPFAARDFA 479 Query: 308 AVITG 312 ITG Sbjct: 480 RAITG 484 >gi|91974997|ref|YP_567656.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris BisB5] gi|91681453|gb|ABE37755.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris BisB5] Length = 315 Score = 312 bits (800), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 153/306 (50%), Positives = 212/306 (69%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 ++ SW R+L+ G TS + +++ IS R+LD + +E+ED+L+R+D+G VA +I Sbjct: 7 TQKPSWWRRLSSGLKRTSSSIGTALSEFISKRKLDRAMLDEIEDVLLRADLGTEVASRIS 66 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 + + RY K +S V V+ + K+L P++KP D + +P V+LVVGVNG GKTT Sbjct: 67 DAVGEGRYDKMISASDVKEIVASEVEKVLAPVAKPLVIDDAKKPFVVLVVGVNGSGKTTT 126 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKLS + + G KVM+AAGDTFR+AAI+QLK+W +RT + GSD+A+LA+ A Sbjct: 127 IGKLSARFAAEGRKVMMAAGDTFRAAAIEQLKVWGERTGTPVIAGAQGSDSASLAFNALT 186 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ + DVL+IDTAGRL N LM+ + K++RV+K++D APH+VL VLDAT GQNAL Sbjct: 187 AAKEQGRDVLLIDTAGRLQNRKELMSELEKVVRVIKKVDDTAPHAVLLVLDATVGQNALS 246 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 QVE F AG TGL+MTK+DGTARGG L+ I HK+PV+F+GVGEG+ DL PF A+DF+ Sbjct: 247 QVEAFTRTAGVTGLVMTKLDGTARGGILVAIAEKHKLPVHFIGVGEGVEDLSPFTARDFA 306 Query: 308 AVITGC 313 I G Sbjct: 307 QAIAGT 312 >gi|188582090|ref|YP_001925535.1| signal recognition particle-docking protein FtsY [Methylobacterium populi BJ001] gi|179345588|gb|ACB81000.1| signal recognition particle-docking protein FtsY [Methylobacterium populi BJ001] Length = 493 Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 153/305 (50%), Positives = 206/305 (67%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 +E W +LT G TS L + +T + + R+LD E+LED LI++D GV A ++ Sbjct: 185 TEKQGWWSRLTAGMRRTSSALSDRVTGLFTKRKLDATTLEDLEDALIQADFGVETAMRMS 244 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 E + RY K +S V ++ I + L P++ P D + +P+VIL VGVNG GKTT Sbjct: 245 EAVGKGRYEKGISPDEVRAILATEIERALEPVATPIAIDSAKKPYVILTVGVNGAGKTTT 304 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKLS K G VMLAAGDTFR+AAI+QL++W +RT + GSDAA LA++AFK Sbjct: 305 IGKLSLKFKAEGRSVMLAAGDTFRAAAIEQLRVWGERTGTPVISRAQGSDAAGLAFDAFK 364 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 +A+ DVL+IDTAGRL N + LMA + K++RV+++LDP APH+ L VLDAT GQNAL Sbjct: 365 EARENGTDVLLIDTAGRLQNKAGLMAELEKIVRVIRKLDPEAPHATLLVLDATVGQNALS 424 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 QVE+F A +GL+MTK+DGTARGG L+ + +PV+F+GVGEG+ DLEPF A+DF+ Sbjct: 425 QVELFSQAAPVSGLVMTKLDGTARGGILVALAAKFGLPVHFIGVGEGVEDLEPFAARDFA 484 Query: 308 AVITG 312 ITG Sbjct: 485 RAITG 489 >gi|182677358|ref|YP_001831504.1| signal recognition particle-docking protein FtsY [Beijerinckia indica subsp. indica ATCC 9039] gi|182633241|gb|ACB94015.1| signal recognition particle-docking protein FtsY [Beijerinckia indica subsp. indica ATCC 9039] Length = 408 Score = 310 bits (795), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 157/309 (50%), Positives = 214/309 (69%), Gaps = 1/309 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW +L G + +S + G+ DI + R+LD+ + E+LED+LIR+D+G AVAQ+I E + Sbjct: 100 SWWTRLRDGLSRSSSSIGTGLVDIFTKRKLDEAMLEDLEDILIRADLGTAVAQRITEAVG 159 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 RY DV + V ++ + ++L P +KP D + +P VILVVGVNG GKTT IGKL Sbjct: 160 KGRYNWDVDPREVKTILASEVEQVLTPYAKPLVIDTTKKPFVILVVGVNGSGKTTTIGKL 219 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + S G KVMLAAGDTFR+AAI+QL+IW R + GSDA+ LA++A K A++ Sbjct: 220 AAQFSREGHKVMLAAGDTFRAAAIEQLQIWGQRLGCTVIARPQGSDASGLAFDAIKTARS 279 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + D+L++DTAGRL N + LM + K+IRV+++ D APH+VL VLDAT GQNAL QVE+ Sbjct: 280 EGADLLLMDTAGRLQNRAELMDELEKIIRVMRKQDEEAPHAVLLVLDATVGQNALNQVEI 339 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F VAG TGL+MTK+DGTARGG L+ I K+P++F+GVGE ++DLEPF A DF I Sbjct: 340 FGRVAGVTGLVMTKLDGTARGGILVAITEKFKLPIHFIGVGEKVDDLEPFAASDFGLAIA 399 Query: 312 GCLDYGEEK 320 G LD E + Sbjct: 400 G-LDKDESQ 407 >gi|115522346|ref|YP_779257.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris BisA53] gi|115516293|gb|ABJ04277.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris BisA53] Length = 316 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 153/310 (49%), Positives = 213/310 (68%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62 N S+ SW R+L+ G TS + + + +S R+LD + EE+ED+L+R+D+G V Sbjct: 2 NDTSESKKPSWWRRLSSGLKRTSSSIGTALAEFVSKRKLDRAMLEEIEDVLLRADLGTEV 61 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + +I + RY K +S V V+ + K+L P+++P D + +P VIL+VGVNG Sbjct: 62 SARIAAAVGEGRYDKMISASDVKEIVAAEVEKVLAPVARPLVIDGAKKPFVILMVGVNGS 121 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+ ++S G KVMLAAGDTFR+AAI+QLK+W +RT + V GSD+A+LA Sbjct: 122 GKTTTIGKLAARLSGEGRKVMLAAGDTFRAAAIEQLKVWGERTGSPVVAGAQGSDSASLA 181 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 + A QA+ + DVL+IDTAGRL N + LM + K++RV++++D APH+VL VLDAT G Sbjct: 182 FNALTQAKDEGRDVLLIDTAGRLQNRTELMNELEKVVRVIRKVDSSAPHAVLLVLDATVG 241 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL QVE F AG TGL+MTK+DGTARGG L+ + HK+PV+F+GVGE ++DL PF Sbjct: 242 QNALSQVEAFSRTAGVTGLVMTKLDGTARGGILVALAEKHKLPVHFIGVGESVDDLAPFT 301 Query: 303 AKDFSAVITG 312 A DF+ I G Sbjct: 302 APDFAKAIAG 311 >gi|23015509|ref|ZP_00055283.1| COG0552: Signal recognition particle GTPase [Magnetospirillum magnetotacticum MS-1] Length = 330 Score = 308 bits (790), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 148/304 (48%), Positives = 212/304 (69%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 E+ SW +L G A +S KL +G+ D+ + R+LDD E+LEDLLI +D+GVA A ++ + Sbjct: 25 ETASWFGRLKSGLAKSSSKLTQGLGDLFTKRKLDDEALEDLEDLLITADLGVATAARVTK 84 Query: 69 ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L R+ +DV+ + ++E I ++L P+++P D + +PHV+LVVGVNG GKTT I Sbjct: 85 HLAKTRFGQDVTSDEIKATLAEEITRILAPVARPLAIDPNRKPHVVLVVGVNGSGKTTTI 144 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GK++K DAGL V LAAGDTFR+AA++QLK+W +RT+ + E G+DAA LAY+A +Q Sbjct: 145 GKMAKTYKDAGLSVTLAAGDTFRAAAVEQLKVWGERTNCPVIARETGADAAGLAYDAVEQ 204 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 ++A+ D+L IDTAGRL N + LMA + K++R +K++D APHSVL VLDAT GQNA Q Sbjct: 205 SRARGDDLLFIDTAGRLQNKADLMAELAKLVRSIKKVDETAPHSVLLVLDATVGQNAHSQ 264 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 VE+F + +GL++TK+DGTARGG L+ + +PV+ +GVGE DL PF A F+ Sbjct: 265 VEIFKDMVAVSGLVLTKLDGTARGGVLVALAEKFGLPVHAIGVGEKAEDLRPFEADAFAK 324 Query: 309 VITG 312 + G Sbjct: 325 SLVG 328 >gi|220924283|ref|YP_002499585.1| signal recognition particle-docking protein FtsY [Methylobacterium nodulans ORS 2060] gi|219948890|gb|ACL59282.1| signal recognition particle-docking protein FtsY [Methylobacterium nodulans ORS 2060] Length = 437 Score = 308 bits (789), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 151/300 (50%), Positives = 205/300 (68%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W +LT G TS L E +T + + R+LD EELED LI++D GV A +I E + Sbjct: 133 WWSRLTGGLRRTSSALSERVTGLFTKRKLDATTLEELEDALIQADFGVETAMRISEAVGK 192 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 RY K ++ V ++ + + L P+++P D +P V+L+VGVNG GKTT IGKL+ Sbjct: 193 GRYEKGIAPDEVRAILATEVERALEPVARPLALDPGAKPFVLLMVGVNGAGKTTTIGKLA 252 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 +K G VMLAAGDTFR+AAI+QLK+W +RT A V G+DAA LA++A + A+ Sbjct: 253 QKFRAQGRSVMLAAGDTFRAAAIEQLKVWGERTGAPVVTRPQGADAAGLAFDALQAARES 312 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 DVL+IDTAGRL N + LMA + K++RV+++LD APH+VL VLDAT GQNA+ QVE+F Sbjct: 313 GTDVLMIDTAGRLQNKAGLMAELEKIVRVIRKLDESAPHAVLLVLDATVGQNAISQVELF 372 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 AG TGL+MTK+DGTARGG L+ + +PV+F+GVGEG++DLEPF A+DF+ I G Sbjct: 373 QKTAGVTGLVMTKLDGTARGGILVALAAKFGLPVHFIGVGEGVDDLEPFTARDFARAIAG 432 >gi|298293311|ref|YP_003695250.1| signal recognition particle-docking protein FtsY [Starkeya novella DSM 506] gi|296929822|gb|ADH90631.1| signal recognition particle-docking protein FtsY [Starkeya novella DSM 506] Length = 318 Score = 308 bits (788), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 153/301 (50%), Positives = 210/301 (69%), Gaps = 1/301 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W ++LT+G T+ L GITD+ + R+LD EELED+LIR+D+GV + +I E + Sbjct: 17 W-KRLTQGLTRTASGLSTGITDLFTKRKLDATTLEELEDVLIRADLGVETSARIAEAVGK 75 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 RY K + + V V+ I +L P++ P ++ +P V+L+VGVNG GKTT IGKL+ Sbjct: 76 GRYDKGIDPEEVRNLVAAEIEAVLTPVAHPLAFNTGAKPFVLLMVGVNGSGKTTTIGKLA 135 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 + G KV+LAAGDTFR+AAI+QLK+WADRT A V G+DAA +A++ +QA+ Sbjct: 136 STLRAQGKKVVLAAGDTFRAAAIEQLKVWADRTGAAIVARPPGADAAGVAFDGLQQAREV 195 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 DVLIIDTAGRL N + LMA + K++RV+K+ D APH+V+ LDAT GQNAL+QVE F Sbjct: 196 GADVLIIDTAGRLQNRAELMAELEKVVRVIKKQDASAPHAVVLTLDATVGQNALQQVEAF 255 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 VAG TGL+MTK+DGTARGG L+ I + +PV+ +G+GEGI+DL+PF A+DF+ I G Sbjct: 256 RRVAGVTGLVMTKLDGTARGGILVAIAAKYGLPVHMIGIGEGIDDLQPFAARDFARAIVG 315 Query: 313 C 313 Sbjct: 316 L 316 >gi|170741579|ref|YP_001770234.1| signal recognition particle-docking protein FtsY [Methylobacterium sp. 4-46] gi|168195853|gb|ACA17800.1| signal recognition particle-docking protein FtsY [Methylobacterium sp. 4-46] Length = 473 Score = 306 bits (784), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 150/304 (49%), Positives = 207/304 (68%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 E W +LT G TS L E +T + + R+LD EELED LI++D GV A +I E Sbjct: 165 ERRGWWSRLTGGLRRTSSALSERVTGLFTKRKLDATTLEELEDALIQADFGVETATRIAE 224 Query: 69 ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + RY K +S V ++ + + L P+++P + + +P V+L+VGVNG GKTT I Sbjct: 225 AVGKGRYEKGISPDEVRAILAAEVERALEPVARPLTLEGAAKPFVLLMVGVNGAGKTTTI 284 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL++K G VMLAAGDTFR+AAI+QLK+W +RT A + G+DAA LA++A + Sbjct: 285 GKLAQKFRAQGRSVMLAAGDTFRAAAIEQLKVWGERTGAPVLSRPQGADAAGLAFDALQA 344 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ DVL+IDTAGRL N + LMA + K++RV+++LD APH+VL VLDAT GQNA+ Q Sbjct: 345 AREAGTDVLMIDTAGRLQNKAGLMAELEKIVRVIRKLDETAPHAVLLVLDATVGQNAISQ 404 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 VE+F AG +GL+MTK+DGTARGG L+ + +PV+F+GVGEG++DLEPF A+DF+ Sbjct: 405 VELFQKTAGVSGLVMTKLDGTARGGILVALAAKFGLPVHFIGVGEGVDDLEPFTARDFAR 464 Query: 309 VITG 312 I G Sbjct: 465 AIAG 468 >gi|90421736|ref|YP_530106.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris BisB18] gi|90103750|gb|ABD85787.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris BisB18] Length = 316 Score = 305 bits (780), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 150/311 (48%), Positives = 210/311 (67%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62 N ++ SW R+L+ G TS + + + ++ R+LD + +E+ED+L+R+D+G V Sbjct: 2 NDTTETKKPSWWRRLSSGLKRTSSSIGTALAEFVTKRKLDRAMLDEIEDVLLRADLGTEV 61 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + +I + RY K +S V V+ + K+L P+++P D +H+P VIL+VGVNG Sbjct: 62 SARIAAAVGVGRYDKMISAGDVKTIVAAEVEKVLAPVAQPLVIDAAHKPFVILMVGVNGS 121 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+ K + G KVMLAAGDTFR+AAI+QLK+W +RT A + GSD+A LA Sbjct: 122 GKTTTIGKLAAKFAAEGRKVMLAAGDTFRAAAIEQLKVWGERTGAPVISGTQGSDSAGLA 181 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 + A A+ + DVL+IDTAGRL N + LM + K++RV+K++D APH+VL VLDAT G Sbjct: 182 FTALTAAKDDRRDVLLIDTAGRLQNKAELMNELEKVVRVIKKVDATAPHAVLLVLDATVG 241 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL QVE F AG TGL+MTK+DGTARGG L+ + +K+PV+F+GVGE + DL PF Sbjct: 242 QNALSQVEAFSRTAGVTGLVMTKLDGTARGGILVALAEKYKLPVHFVGVGESVEDLAPFT 301 Query: 303 AKDFSAVITGC 313 A DF+ I G Sbjct: 302 AADFAKAIAGT 312 >gi|170751708|ref|YP_001757968.1| signal recognition particle-docking protein FtsY [Methylobacterium radiotolerans JCM 2831] gi|170658230|gb|ACB27285.1| signal recognition particle-docking protein FtsY [Methylobacterium radiotolerans JCM 2831] Length = 466 Score = 304 bits (778), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 151/305 (49%), Positives = 202/305 (66%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 E+ W +LT G TS L + +T + + R+LD E+LED LI++D G+ A ++ Sbjct: 158 PEAKGWWSRLTSGMKRTSSALSDRVTGLFTKRKLDATTLEDLEDALIQADFGLETAMRVS 217 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 E + RY K +S V ++ + + L P++ P D + +P VIL VGVNG GKTT Sbjct: 218 EAVGKGRYEKGISPDEVRAILAAEVERALEPVAVPLTIDAARKPFVILTVGVNGAGKTTT 277 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 +GKL+ K+ G VMLAAGDTFR+AAIDQLK+W RT V G+DAA LA++A K Sbjct: 278 LGKLASKLRAEGRTVMLAAGDTFRAAAIDQLKVWGARTGTPVVSGAQGADAAGLAFDALK 337 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 QA A DVL+IDTAGRL N + LMA + K++RVL++ DP APH+ L VLDAT GQNAL Sbjct: 338 QAGAAGTDVLLIDTAGRLQNKAGLMAELEKIVRVLRKQDPDAPHATLLVLDATVGQNALS 397 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 QVE+F A +GL+MTK+DGTARGG L+ + +PV+F+GVGEG+ DLEPF A+DF+ Sbjct: 398 QVELFSQAAPVSGLVMTKLDGTARGGILVALAAKFGLPVHFIGVGEGVEDLEPFAARDFA 457 Query: 308 AVITG 312 I G Sbjct: 458 RAIAG 462 >gi|209883417|ref|YP_002287274.1| signal recognition particle-docking protein FtsY [Oligotropha carboxidovorans OM5] gi|209871613|gb|ACI91409.1| signal recognition particle-docking protein FtsY [Oligotropha carboxidovorans OM5] Length = 318 Score = 304 bits (778), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 156/301 (51%), Positives = 213/301 (70%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW ++L+ G TS + + D++ R+LD + E++ED+L+R+D+G VA +I ++ Sbjct: 12 SWWQRLSAGLKRTSGSIGAAVADLVVKRKLDRAMLEDIEDVLLRADLGTEVAARIAAKVG 71 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 RY KDVS Q V V+ + K+L P++ P D S +P +ILVVGVNG GKTT IGKL Sbjct: 72 EGRYDKDVSAQDVQAIVAAEVEKVLAPVAMPLVIDESQKPFIILVVGVNGSGKTTTIGKL 131 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K + G +VMLAAGDTFR+AAI+QLKIW +RT A + + GSDAA+LA++A A+A Sbjct: 132 AAKFAAEGRRVMLAAGDTFRAAAIEQLKIWGERTGAPVIARDHGSDAASLAFDAASAAKA 191 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 DVL+IDTAGRL N + LM + K+ RV++++D APH+VL VLDAT GQNAL QVE Sbjct: 192 DNRDVLLIDTAGRLQNKAELMVELEKVARVIRKVDTSAPHAVLLVLDATVGQNALSQVEA 251 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F AG TGL+MTK+DGTARGG L+ I +K+PV+F+GVGEG++DL PF A+DF+ I Sbjct: 252 FRKTAGVTGLVMTKLDGTARGGILVAISEIYKLPVHFIGVGEGVDDLAPFTARDFAHAIA 311 Query: 312 G 312 G Sbjct: 312 G 312 >gi|109649512|gb|ABG36707.1| FtsY [Bartonella australis] Length = 366 Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 145/299 (48%), Positives = 208/299 (69%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 +S V + +W +L KG + +S +L I D+ +L +EL D+ ++D+GV Sbjct: 68 LSEPSVEQKKTAWFGRLKKGLSLSSQRLSGSICDLFVKEKLVKDTLQELGDIPFQADLGV 127 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 A I + + + RY K +S + ++ I K+L P++ P D +H+PHVIL+VGVN Sbjct: 128 ETAAHITDTIASSRYEKSLSPDNIHTIMANEIEKILEPVAIPLELDLNHKPHVILLVGVN 187 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+ K++ +GLKV LAAGDTFR+AAI+QL +W +RT + V +++G+DAA+ Sbjct: 188 GTGKTTTIGKLAAKLTASGLKVTLAAGDTFRAAAIEQLHVWGERTRSPVVSTKLGADAAS 247 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LA++A+++A+ + DVLIIDTAGRL N + LM + K+IRVL + P APH+VLQ LDAT Sbjct: 248 LAFDAYEKAKKENSDVLIIDTAGRLQNKTELMDELAKIIRVLGKHTPKAPHTVLQTLDAT 307 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQNAL QV++F VAG GL+MTK+DG+ARGG L+ I +K+PVYF+GVGE I DL+ Sbjct: 308 TGQNALNQVDIFRDVAGVNGLVMTKLDGSARGGILVAIASKYKLPVYFIGVGENIEDLQ 366 >gi|83592517|ref|YP_426269.1| signal recognition particle-docking protein FtsY [Rhodospirillum rubrum ATCC 11170] gi|83575431|gb|ABC21982.1| signal recognition particle-docking protein FtsY [Rhodospirillum rubrum ATCC 11170] Length = 506 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 141/297 (47%), Positives = 214/297 (72%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 +S+ +L G + TS KL GI ++S R+LDD E+LEDLLI +DIGV A K+ L Sbjct: 203 VSFFARLRGGLSRTSGKLVGGIMGLVSERKLDDQALEDLEDLLITADIGVETAGKLTRSL 262 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +R+ K+V+ + + ++ I +L P+++P D S +PHV+LVVGVNG GKTT IGK Sbjct: 263 AKERFGKNVTGEEIRGHFADEIATILGPVARPLEIDGSLKPHVVLVVGVNGSGKTTTIGK 322 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 ++ ++ +V+LAAGDTFR+AA++QL+IW DRT + + + G+D+A LA++A ++A+ Sbjct: 323 IANQLVHENKRVLLAAGDTFRAAAVEQLRIWGDRTGCEVIARDTGADSAGLAFDALQKAR 382 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ DVL+IDTAGRLHN + LM + K++RVL+++DP PH+ LQVLDAT GQNA +QV+ Sbjct: 383 AEGYDVLLIDTAGRLHNKTELMEELKKVVRVLRKIDPAVPHTCLQVLDATVGQNAHQQVK 442 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 +F + +GL+MTK+DGTA+GG ++ + +PV+++G+GEGI+DL PF A+DF+ Sbjct: 443 VFQEMTDVSGLVMTKLDGTAKGGVVVALADKFGLPVHYVGIGEGIDDLRPFSARDFA 499 >gi|217979345|ref|YP_002363492.1| signal recognition particle-docking protein FtsY [Methylocella silvestris BL2] gi|217504721|gb|ACK52130.1| signal recognition particle-docking protein FtsY [Methylocella silvestris BL2] Length = 483 Score = 296 bits (759), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 145/300 (48%), Positives = 208/300 (69%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W +L +G A +S + G+ I + R+LD + +ELE++LIR+D+GVA A I + Sbjct: 175 WWTRLRQGLARSSDSIGSGLKAIFTKRKLDAAMLDELEEVLIRADLGVATATHIAGLVGK 234 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 RY K + V V ++E + ++L P ++P D + +P VILVVGVNG GKTT IGKL+ Sbjct: 235 GRYDKSIEVDEVKTILAEEVERVLAPYARPLEIDPAIKPFVILVVGVNGSGKTTTIGKLA 294 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 + S G KV+LAAGDTFR+AAI+QL++W DR + + GSDA+ALA++A + A+ Sbjct: 295 AQFSQEGRKVLLAAGDTFRAAAIEQLRLWGDRLNCAVIAGNQGSDASALAFDAIRAARES 354 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 D+LI+DTAGRL N + LMA + K++RV+K+++P APH+VL VLDAT GQNA+ Q E+F Sbjct: 355 GADILIMDTAGRLQNRAELMAELEKIVRVMKKVEPAAPHAVLLVLDATVGQNAVSQTEIF 414 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 VAG TGL+MTK+DGTARGG L+ + ++P++++GVGE DL PF A+DF+ I G Sbjct: 415 SKVAGVTGLVMTKLDGTARGGILVALAEKFQLPIHYVGVGETAADLAPFAARDFARAIAG 474 >gi|158425332|ref|YP_001526624.1| cell division transporter substrate-binding protein [Azorhizobium caulinodans ORS 571] gi|158332221|dbj|BAF89706.1| cell division transporter substrate-binding protein [Azorhizobium caulinodans ORS 571] Length = 313 Score = 296 bits (758), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 154/304 (50%), Positives = 215/304 (70%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 E + R+LT G A T+ L +GITD+++ R+LD EELEDLLIR+D+G A A +IVE Sbjct: 8 EKPGFWRRLTSGLARTATSLTQGITDLVTKRKLDAETLEELEDLLIRADLGTATAARIVE 67 Query: 69 ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + R+ K ++ V ++ + ++L P++KPF D +P V+L+VGVNG GKTT I Sbjct: 68 AVGKGRHDKMIAPDEVKGLIASEVEEILGPVAKPFVPDAGQKPFVVLMVGVNGSGKTTTI 127 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ + G ++ LAAGDTFR+AAI+QLK+W RT A V E G+DAA +A++A + Sbjct: 128 GKLAAQWRSEGKRLTLAAGDTFRAAAIEQLKVWGARTGAHVVAREQGADAAGVAHDAITE 187 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A D+++IDTAGRL N + LM + K++RV+K+L+P APH+VL VLDAT GQNAL Q Sbjct: 188 ARANGSDIVMIDTAGRLQNRTELMDELEKVVRVVKKLEPTAPHAVLLVLDATVGQNALNQ 247 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 VE+F AG TGL+MTK+DGTARGG L+ I +++P++ +GVGEG DL+PF A+DFS Sbjct: 248 VEVFARTAGVTGLVMTKLDGTARGGILVAIAQKYRLPIHLVGVGEGAEDLQPFSARDFSR 307 Query: 309 VITG 312 I G Sbjct: 308 AIAG 311 >gi|254292478|ref|YP_003058501.1| signal recognition particle-docking protein FtsY [Hirschia baltica ATCC 49814] gi|254041009|gb|ACT57804.1| signal recognition particle-docking protein FtsY [Hirschia baltica ATCC 49814] Length = 446 Score = 292 bits (748), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 137/303 (45%), Positives = 206/303 (67%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + ++T+G +S KL +GI+ + + ++LDD EELEDLLI SD+G +VA ++ + + Sbjct: 139 FFARMTQGLQRSSSKLADGISSVFTKKKLDDDTLEELEDLLISSDLGASVAMRVCDNIRK 198 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 R+ K+V+ + + +++ I +L P + + P V+L VGVNG GKTT IGK++ Sbjct: 199 DRFDKEVTDEEIKQALAQEITNVLKPREEILDLSDGPSPRVVLFVGVNGSGKTTTIGKIA 258 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 K+S G ++LAAGDTFR+AA++QLK+WA+R +A F+ G+D+A LAY+A KQA + Sbjct: 259 SKLSAQGANILLAAGDTFRAAAVEQLKVWAERANAGFLSRPDGADSAGLAYDAVKQATTE 318 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 D+++IDTAGRL N + LM + K++R +++++P APH V+ VLDAT GQNAL QVE F Sbjct: 319 NRDLVLIDTAGRLQNRTELMDELAKVVRAIRKIEPTAPHEVILVLDATVGQNALSQVEAF 378 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 AG TGL+MTK+DGTA+GG L+ I H +P++F+G+GE DL PF A F+ + G Sbjct: 379 KHTAGVTGLVMTKLDGTAKGGVLVAIADKHALPIHFVGIGEKAEDLHPFSASAFANALVG 438 Query: 313 CLD 315 D Sbjct: 439 LSD 441 >gi|296114906|ref|ZP_06833554.1| signal recognition particle-docking protein FtsY [Gluconacetobacter hansenii ATCC 23769] gi|295978612|gb|EFG85342.1| signal recognition particle-docking protein FtsY [Gluconacetobacter hansenii ATCC 23769] Length = 331 Score = 292 bits (747), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 136/303 (44%), Positives = 208/303 (68%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +L + +L G + ++ KL G++ + + R+LDD E+LEDLLI +D+G VA K+++ Sbjct: 2 ALGFFSRLKAGLSRSTQKLSGGLSAVFTRRKLDDQALEDLEDLLISADLGPNVAAKVIDS 61 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + ++ K+V+ + V ++E I K+L P++ PF D +H+PHV+LVVGVNG GKTT IG Sbjct: 62 FRSSKFGKEVTDEEVRTALAEEIAKILEPVAIPFEPDPAHKPHVVLVVGVNGTGKTTTIG 121 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 K+++ + G KVM+ AGDTFR+AA++QL++W +R A + +DAA LA+EA K+ Sbjct: 122 KMARYYGEQGKKVMMVAGDTFRAAAVEQLQVWGERVGAPVIAGPPNADAAGLAFEALKKG 181 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ D+L++DTAGRLHN LM + K+IRV+++ D APHSV VLDATTGQNA+ QV Sbjct: 182 KAEGADLLLVDTAGRLHNKGALMEELAKIIRVMRKFDETAPHSVFLVLDATTGQNAMEQV 241 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 +F + TGL++TK+DG+ARGG ++ + +PV+ +GVGE DL PF A+ F+ Sbjct: 242 RVFKELVNVTGLVVTKLDGSARGGIVVALADAFGLPVHMVGVGEQAEDLRPFSAQAFAQG 301 Query: 310 ITG 312 + G Sbjct: 302 LVG 304 >gi|154251866|ref|YP_001412690.1| signal recognition particle-docking protein FtsY [Parvibaculum lavamentivorans DS-1] gi|154155816|gb|ABS63033.1| signal recognition particle-docking protein FtsY [Parvibaculum lavamentivorans DS-1] Length = 316 Score = 288 bits (738), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 150/311 (48%), Positives = 209/311 (67%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62 + A + S +++ +G ++ L GIT I + ++LD +ELE+LLI +D+G+ Sbjct: 5 GSEAAEKKRSLFQRMKEGLTRSTKNLSGGITGIFTKKKLDRATLDELEELLIGADLGLDA 64 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 A I E + RY K+VS + + V++ I ++L P+ KP D + +P VIL+ GVNG Sbjct: 65 AAAIAEAVGKDRYDKEVSPEEIRKIVADEIAEVLKPVEKPLEIDATKKPFVILMTGVNGA 124 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGK+ + G VMLAAGDTFR+AA++QLK+W R A ++ G DAA LA Sbjct: 125 GKTTTIGKIGATLKAEGKSVMLAAGDTFRAAAVEQLKVWGTRIGAPVCATKTGGDAAGLA 184 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 YEA +A+ + DVL+IDTAGRL N + LMA + K+IRV+++LDP PH+ L VLDATTG Sbjct: 185 YEALARAKEEGTDVLLIDTAGRLQNKADLMAELEKVIRVMRKLDPETPHATLLVLDATTG 244 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL QVE+F VAG TGL+MTK+DGTARGG L+ I +PV+ +GVGEGI+DL+PF Sbjct: 245 QNALNQVEIFGQVAGITGLVMTKLDGTARGGILVAIARKFGLPVHMIGVGEGIDDLQPFS 304 Query: 303 AKDFSAVITGC 313 A+ ++ ITG Sbjct: 305 AEAYARAITGA 315 >gi|144898020|emb|CAM74884.1| Signal recognition particle GTPase [Magnetospirillum gryphiswaldense MSR-1] Length = 357 Score = 285 bits (728), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 139/307 (45%), Positives = 200/307 (65%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A SW+ +L G +S KL +G+ D+ + R+LDD E+LEDLLI +D+GV A + Sbjct: 49 LAEAPQSWLSRLKSGLTKSSSKLTQGLGDLFTKRKLDDEALEDLEDLLITTDLGVGTAAR 108 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 + + L R+ +DV + + ++E + ++L P++KP RPHV+LVVGVNG GKT Sbjct: 109 VTKRLAKTRFGQDVGAEEIKQVLAEEVAQILAPVAKPLQPACVARPHVVLVVGVNGSGKT 168 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGK++K D G +V LAAGDTFR+AA++QLK+W +RT E G+DAA L ++A Sbjct: 169 TTIGKMAKHFKDQGKQVALAAGDTFRAAAVEQLKVWGERTQCPVFSRETGADAAGLVFDA 228 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 ++ + D+L +DTAGRL N + LM + K++RV+K+ D APH VL VLDAT GQNA Sbjct: 229 MAESAKRGDDLLFVDTAGRLQNKADLMEELRKVVRVIKKQDETAPHDVLLVLDATVGQNA 288 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 QVE+F + TGL++TK+DGTARGG L+ + +PV+ +GVGE DL PF A Sbjct: 289 HSQVEVFKDMVDVTGLVLTKLDGTARGGVLVALAEKFALPVHAIGVGEKAEDLRPFDANA 348 Query: 306 FSAVITG 312 F+ + G Sbjct: 349 FARSLVG 355 >gi|83309312|ref|YP_419576.1| Signal recognition particle GTPase [Magnetospirillum magneticum AMB-1] gi|82944153|dbj|BAE49017.1| Signal recognition particle GTPase [Magnetospirillum magneticum AMB-1] Length = 332 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 147/301 (48%), Positives = 209/301 (69%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW +L G A +S KL +G+ D+ + R+LDD EELEDLLI +D+GVA+A ++ + L Sbjct: 30 SWFGRLKSGLAKSSSKLTQGLGDLFTKRKLDDEALEELEDLLITADLGVAMAARVTKHLA 89 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 R+ +DV+ + ++E I ++L P++KP D + +PHV+LVVGVNG GKTT IGK+ Sbjct: 90 KTRFGQDVTSDEIKATLAEEITRILTPVAKPLEIDSTRKPHVVLVVGVNGSGKTTTIGKM 149 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +K DAGL V LAAGDTFR+AA++QLK+W +RT + E G+DAA LAY+A +Q++A Sbjct: 150 AKTYKDAGLNVTLAAGDTFRAAAVEQLKVWGERTHCPVIARETGADAAGLAYDAVEQSRA 209 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + D+L IDTAGRL N + LMA + K++R +K++D APH VL VLDAT GQNA QVE+ Sbjct: 210 RGDDLLFIDTAGRLQNKADLMAELAKLVRSIKKVDETAPHDVLLVLDATVGQNAHSQVEI 269 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F + +GL++TK+DGTARGG L+ + +PV+ +G+GE DL PF A F+ + Sbjct: 270 FKDMVAVSGLVLTKLDGTARGGVLVALAEKFGLPVHAIGIGEKAEDLRPFEADAFAKSLV 329 Query: 312 G 312 G Sbjct: 330 G 330 >gi|329113597|ref|ZP_08242377.1| Cell division protein FtsY-like protein [Acetobacter pomorum DM001] gi|326697119|gb|EGE48780.1| Cell division protein FtsY-like protein [Acetobacter pomorum DM001] Length = 309 Score = 282 bits (722), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 145/306 (47%), Positives = 214/306 (69%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +L + +L +G + ++ KL GIT I + R+LDD EELEDLLI +D+G AVA++I+E Sbjct: 2 ALGFFSRLKQGLSRSTQKLGGGITGIFTKRKLDDEALEELEDLLITADMGPAVAERIIES 61 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + R+ +V+ + + +++ I +L P++KPF D H+PHV+L+VGVNGVGKTT IG Sbjct: 62 FRSSRFGTEVTDEEIRTTLADEIAAILEPVAKPFEPDPEHKPHVVLMVGVNGVGKTTTIG 121 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 K+++ ++ G KVM+ AGDTFR+AA++QL+IW +RT + G+DAA LA+EA K+ Sbjct: 122 KMARFFTEEGKKVMMVAGDTFRAAAVEQLQIWGERTGCPVIAGPPGADAAGLAFEALKRG 181 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ D+L +DTAGRLHN S LM + K+IRV+++ D APHSVL VLDATTGQNA+ QV Sbjct: 182 KAEGADLLFVDTAGRLHNKSALMEELAKIIRVMRKFDETAPHSVLLVLDATTGQNAVEQV 241 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 +F + TGL++TK+DG+ARGG ++ + +PV+ +GVGE DL PF A D++ Sbjct: 242 RVFRELVNVTGLVVTKLDGSARGGIVVALADQFGLPVHAVGVGEQAEDLRPFSAVDYARG 301 Query: 310 ITGCLD 315 + G D Sbjct: 302 LVGVTD 307 >gi|148261479|ref|YP_001235606.1| signal recognition particle-docking protein FtsY [Acidiphilium cryptum JF-5] gi|326404963|ref|YP_004285045.1| signal recognition particle-docking protein FtsY [Acidiphilium multivorum AIU301] gi|146403160|gb|ABQ31687.1| signal recognition particle-docking protein FtsY [Acidiphilium cryptum JF-5] gi|325051825|dbj|BAJ82163.1| signal recognition particle-docking protein FtsY [Acidiphilium multivorum AIU301] Length = 312 Score = 281 bits (720), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 135/304 (44%), Positives = 202/304 (66%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +L ++ +L G ++ KL GITD + R+LDD EELEDLLI +D+G A A +++ Sbjct: 3 ALGFLSRLKSGLTRSTQKLAAGITDTFTKRKLDDAALEELEDLLITADLGPAAAARVIRA 62 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 R+ +DVS + ++E + K+L P+++P D S P VIL+VGVNG GKTT IG Sbjct: 63 FRRTRFGQDVSAPEIRASLAEEVAKILAPVAQPLAIDRSKNPFVILMVGVNGTGKTTTIG 122 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL++ ++AG + +L AGDTFR+AA++QL++W +RT A + +D A LA++A +A Sbjct: 123 KLAQSYAEAGARPLLVAGDTFRAAAVEQLQVWGERTGAPVMTGPANADPAGLAFDAIARA 182 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + D+++IDTAGRLHN + LM + K+IRV+++ D APH+VL LDATTGQNA+ QV Sbjct: 183 RRDGHDIVLIDTAGRLHNKAALMEELRKIIRVIRKQDETAPHAVLLTLDATTGQNAIAQV 242 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 F + TGLI+TK+DG+AR G ++ + T +P++ +GVGE DL PF A +F+ Sbjct: 243 ATFKEMVDLTGLIVTKLDGSARAGVVVALAETAALPIHAVGVGEQAADLRPFDATEFARA 302 Query: 310 ITGC 313 +TG Sbjct: 303 LTGA 306 >gi|85710834|ref|ZP_01041895.1| Signal recognition particle GTPase [Idiomarina baltica OS145] gi|85695238|gb|EAQ33175.1| Signal recognition particle GTPase [Idiomarina baltica OS145] Length = 426 Score = 279 bits (713), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 135/295 (45%), Positives = 196/295 (66%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W R LT+G TS + G+ + +++DD + EELE L+ +D+GV KI++ L Sbjct: 121 WAR-LTEGLKRTSGSIGSGLFGVFKGKKIDDDLFEELETQLLMADLGVKTTTKIIDNLTQ 179 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K + LY++ E + +L P+ KP D S P+VILV GVNGVGKTT IGKL Sbjct: 180 QADRKQLKDAEALYELLQEQMEALLEPVDKPLAIDTSKTPYVILVTGVNGVGKTTTIGKL 239 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +K+ G VMLAAGDTFR+AA++QL+IW +R + + GSD+A++ ++A + A+A Sbjct: 240 AKQFKREGKSVMLAAGDTFRAAAVEQLQIWGERNEIPVIAQQTGSDSASVLFDAMQAAKA 299 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+ DP APH V+ LDA TGQNA+ Q ++ Sbjct: 300 RGIDVLIADTAGRLQNKSNLMEELKKIVRVMKKQDPEAPHEVMLTLDAGTGQNAISQAKL 359 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G +G++MTK+DGTA+GG + + KIP+ ++GVGE ++DL PFVA+DF Sbjct: 360 FTEAVGVSGIVMTKLDGTAKGGVIFAVADEFKIPIRYIGVGEQLDDLRPFVARDF 414 >gi|307294714|ref|ZP_07574556.1| signal recognition particle-docking protein FtsY [Sphingobium chlorophenolicum L-1] gi|306879188|gb|EFN10406.1| signal recognition particle-docking protein FtsY [Sphingobium chlorophenolicum L-1] Length = 312 Score = 278 bits (712), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 144/302 (47%), Positives = 196/302 (64%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW +L G TS KL E +T + + LD+ +E+E+ LI SD+G A+A ++ + L Sbjct: 7 SWRDRLFGGLKRTSDKLGENLTGLFTKAALDEQTLDEIEEALIVSDLGPAMAARVRDRLS 66 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 RY ++++ + ++E I K L P+++P + RP VILV+GVNG GKTT I KL Sbjct: 67 EGRYNRELTEDYLREIIAEEIEKTLAPVARPLEIEAFPRPQVILVIGVNGSGKTTTIAKL 126 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + VMLAAGDTFR+AAI QLK+WADR V + G DAA + ++A KQA A Sbjct: 127 ANNFLEQDYGVMLAAGDTFRAAAIGQLKVWADRLGIPIVAGKEGGDAAGIVFDAVKQATA 186 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +DVLI+DTAGRL N + LM + K+ RVL RL+P APH V+ VLDATTGQNAL Q+E+ Sbjct: 187 TGIDVLIVDTAGRLQNKTELMDELAKIRRVLGRLNPAAPHDVVLVLDATTGQNALSQIEV 246 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F VA TGL+MTK+DGTARGG L+ +++P++ +GVGE I DL PF D + I Sbjct: 247 FKEVAQVTGLVMTKLDGTARGGVLVAAAEKYRLPIHAIGVGEKIEDLRPFDPGDMARAIA 306 Query: 312 GC 313 G Sbjct: 307 GT 308 >gi|16127909|ref|NP_422473.1| signal recognition particle-docking protein FtsY [Caulobacter crescentus CB15] gi|221236729|ref|YP_002519166.1| cell division protein FtsY [Caulobacter crescentus NA1000] gi|13425439|gb|AAK25641.1| signal recognition particle-docking protein FtsY [Caulobacter crescentus CB15] gi|220965902|gb|ACL97258.1| cell division protein ftsY [Caulobacter crescentus NA1000] Length = 313 Score = 278 bits (712), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 136/303 (44%), Positives = 200/303 (66%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W ++LT G +S + E +T + + + LD + LE++LI +D+G +A +I E Sbjct: 11 WFQRLTSGLTRSSQAMTEQVTGVFTKKALDQEQLDALEEMLIEADLGPQIAARITEAFGK 70 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 R+ K + V ++ELI L F+ RP+V+L +GVNG GKTT +GK++ Sbjct: 71 ARFGKSSTDDEVKEALAELIAAELADRQGDFDPLNGPRPYVVLFIGVNGSGKTTTLGKIA 130 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 +++ G +V++AAGDTFR+AA++QLK+WADR ADF+ GSDAAALAYEA ++A+A+ Sbjct: 131 ADLTEKGARVLIAAGDTFRAAAVEQLKVWADRAGADFMSKPTGSDAAALAYEAVERAKAE 190 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 DV++IDTAGRL N LM + K+IRV+K++DP PH L VLDAT G+NAL Q ++F Sbjct: 191 HYDVVLIDTAGRLQNKQGLMDELLKVIRVVKKVDPDYPHETLLVLDATVGRNALAQEKIF 250 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + G +G++MTK+DGTARGG L+P+ P+ +GVGEG+ DL+PF A+ FS + G Sbjct: 251 GSQVGVSGIVMTKLDGTARGGVLVPVARASDSPIKLIGVGEGVEDLQPFDARAFSRSLVG 310 Query: 313 CLD 315 D Sbjct: 311 LKD 313 >gi|330993224|ref|ZP_08317160.1| Cell division protein ftsY-like protein [Gluconacetobacter sp. SXCC-1] gi|329759626|gb|EGG76134.1| Cell division protein ftsY-like protein [Gluconacetobacter sp. SXCC-1] Length = 334 Score = 277 bits (709), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 142/303 (46%), Positives = 212/303 (69%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +L + +L G + ++ KL GIT + + R+LDD EELEDLLI +D+G +VA+K+++ Sbjct: 2 ALGFFSRLKAGLSRSTQKLSGGITAVFTRRKLDDEALEELEDLLISADLGPSVAEKVIDS 61 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 ++ K+V+ + V ++E I +L P++ PF D H+PHV+LVVGVNG GKTT IG Sbjct: 62 FRRAKFGKEVTDEEVRAALAEEIANILQPVAIPFEPDPKHKPHVVLVVGVNGTGKTTTIG 121 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 K+++ + G KVM+ AGDTFR+AA++QL++W +RT A + +DAA LA+EA K+A Sbjct: 122 KMARFYGEQGKKVMMVAGDTFRAAAVEQLQVWGERTGAPVIAGRPNADAAGLAFEALKRA 181 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A++ D+L++DTAGRLHN S LM + K+IRV+++ D APHSVL VLDATTGQNA+ QV Sbjct: 182 TAEQADLLLVDTAGRLHNKSALMEELAKIIRVMRKFDETAPHSVLLVLDATTGQNAVEQV 241 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 +F + TGL++TK+DG+ARGG ++ + +PV+ +GVGE +DL PF A+ F+ Sbjct: 242 RVFKELVNVTGLVVTKLDGSARGGIVVALADAFGLPVHLVGVGEQADDLRPFSAEAFARG 301 Query: 310 ITG 312 + G Sbjct: 302 LVG 304 >gi|294012738|ref|YP_003546198.1| signal recognition particle GTPase [Sphingobium japonicum UT26S] gi|292676068|dbj|BAI97586.1| signal recognition particle GTPase [Sphingobium japonicum UT26S] Length = 310 Score = 277 bits (709), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 144/302 (47%), Positives = 196/302 (64%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW +L G TS KL E +T + + LD+ +E+E+ LI SD+G A+A ++ + L Sbjct: 5 SWRDRLFGGLKRTSDKLGENLTGLFTKAALDEQTLDEIEEALIVSDLGPAMAARVRDRLS 64 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 RY ++++ + ++E I K L P+++P + RP VILV+GVNG GKTT I KL Sbjct: 65 EGRYNRELTEDYLREIIAEEIEKTLAPVARPLEIEAFPRPQVILVIGVNGSGKTTTIAKL 124 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + VMLAAGDTFR+AAI QLK+WADR V + G DAA + ++A KQA A Sbjct: 125 ANLFLEQDYGVMLAAGDTFRAAAIGQLKVWADRLGIPIVAGKEGGDAAGIVFDAVKQATA 184 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +DVLI+DTAGRL N + LM + K+ RVL RL+P APH V+ VLDATTGQNAL Q+E+ Sbjct: 185 TGIDVLIVDTAGRLQNKTELMDELAKIRRVLGRLNPAAPHDVVLVLDATTGQNALSQIEV 244 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F VA TGL+MTK+DGTARGG L+ +++P++ +GVGE I DL PF D + I Sbjct: 245 FKEVAQVTGLVMTKLDGTARGGVLVAAAEKYRLPIHAIGVGEKIEDLRPFDPGDMARAIA 304 Query: 312 GC 313 G Sbjct: 305 GT 306 >gi|7230353|gb|AAF42961.1|AF090335_1 FtsY [Caulobacter vibrioides] Length = 313 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 136/303 (44%), Positives = 199/303 (65%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W ++LT G +S + E +T + + + LD + LE++LI +D+G +A +I E Sbjct: 11 WFQRLTSGLTRSSQAMTEQVTGVFTKKALDQEQLDALEEMLIEADLGPQIAARITEAFGK 70 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 R+ K + V ++ELI L F+ RP+V+L +GVNG GKTT +GK++ Sbjct: 71 ARFGKSSTDDEVKEALAELIAAELADRQGDFDPLNGPRPYVVLFIGVNGSGKTTTLGKIA 130 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 +++ G +V++AAGDTFR+AA++QLK+WADR ADF+ GSDAAALAYEA ++A+A+ Sbjct: 131 ADLTEKGARVLIAAGDTFRAAAVEQLKVWADRAGADFMSKPTGSDAAALAYEAVERAKAE 190 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 DV++IDTAGRL N LM + K IRV+K++DP PH L VLDAT G+NAL Q ++F Sbjct: 191 HYDVVLIDTAGRLQNKQGLMDELLKGIRVVKKVDPDYPHETLLVLDATVGRNALAQEKIF 250 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + G +G++MTK+DGTARGG L+P+ P+ +GVGEG+ DL+PF A+ FS + G Sbjct: 251 GSQVGVSGIVMTKLDGTARGGVLVPVARASDSPIKLIGVGEGVEDLQPFDARAFSRSLVG 310 Query: 313 CLD 315 D Sbjct: 311 LKD 313 >gi|304320389|ref|YP_003854032.1| FtsY, signal recognition particle-docking protein [Parvularcula bermudensis HTCC2503] gi|303299291|gb|ADM08890.1| FtsY, signal recognition particle-docking protein [Parvularcula bermudensis HTCC2503] Length = 459 Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 141/289 (48%), Positives = 191/289 (66%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L G A TS KL GI I + +RLDD EELEDLLI +DIGV +I+ +L Sbjct: 157 FFGRLRSGLAKTSAKLSGGIGTIFTKKRLDDDTLEELEDLLIMADIGVPTTTRIITQLAK 216 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 ++ ++VS + + +S I L PL D +H PHVIL+ GVNG GKTT IGKL+ Sbjct: 217 DKFDQEVSGEDIRAILSREIETTLAPLEAQLAPDGTHGPHVILMTGVNGAGKTTTIGKLA 276 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 ++ + G V+LAA DTFR+AAI+QL +W +R + E G+D AALAY+A +AQA+ Sbjct: 277 QQFTAEGKSVLLAACDTFRAAAIEQLTVWGERVGVPVISREQGADPAALAYDAVAKAQAE 336 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 +D+++IDTAGRL N LM +GK++RV+K+LD APH + VLDAT GQNAL Q E F Sbjct: 337 GIDIVLIDTAGRLQNRRELMDELGKIVRVVKKLDDSAPHDAVLVLDATVGQNALSQTEAF 396 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 A TGLIMTK+DGTARGG L+ + +P++ +GVGE + DL+PF Sbjct: 397 LETAKITGLIMTKLDGTARGGVLVALGDKFGLPIHAIGVGETVEDLQPF 445 >gi|295691524|ref|YP_003595217.1| signal recognition particle-docking protein FtsY [Caulobacter segnis ATCC 21756] gi|295433427|gb|ADG12599.1| signal recognition particle-docking protein FtsY [Caulobacter segnis ATCC 21756] Length = 313 Score = 275 bits (704), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 135/303 (44%), Positives = 198/303 (65%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W ++LT G TS + E +T + + + LD + LE++LI +D+G +A +I + Sbjct: 11 WFQRLTSGLTRTSQAMTEQVTGVFTKKPLDQEQLDALEEMLIEADLGPEIAARITDAFGK 70 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 R+ K + V ++ELI L F+ RP+V+L +GVNG GKTT +GK++ Sbjct: 71 ARFGKSSTDDEVKEALAELIAAELADRQGDFDPLSGPRPYVVLFIGVNGSGKTTTLGKIA 130 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 +++ G +V++AAGDTFR+AA++QLK+WADR ADF+ GSDAA LAYEA ++A+A+ Sbjct: 131 ADLTEKGARVLIAAGDTFRAAAVEQLKVWADRAGADFMSKPTGSDAAGLAYEAVERAKAE 190 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 DV++IDTAGRL N LM + K+IRV+K++DP PH L VLDAT G+NAL Q ++F Sbjct: 191 HYDVVLIDTAGRLQNKQGLMDELLKVIRVVKKVDPDYPHETLLVLDATVGRNALAQEKIF 250 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 G +G++MTK+DGTARGG L+P+ P+ +GVGEG+ DL+PF A+ FS + G Sbjct: 251 GNQVGVSGIVMTKLDGTARGGVLVPVARASDSPIKLIGVGEGVEDLQPFDARAFSRSLVG 310 Query: 313 CLD 315 D Sbjct: 311 LKD 313 >gi|114799634|ref|YP_762197.1| signal recognition particle-docking protein FtsY [Hyphomonas neptunium ATCC 15444] gi|114739808|gb|ABI77933.1| signal recognition particle-docking protein FtsY [Hyphomonas neptunium ATCC 15444] Length = 414 Score = 275 bits (703), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 135/298 (45%), Positives = 204/298 (68%), Gaps = 1/298 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L +G A ++ KL EG+ + R+LDD EEL+DLLI SD+G VA ++ + + R+ Sbjct: 115 RLGEGLARSTAKLTEGLA-ALGRRKLDDATLEELQDLLITSDMGTRVAMRVTKGIAKGRF 173 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 K++S + + ++E I ++L P + ++ RP ++L VGVNG GKTT IGK++ K+ Sbjct: 174 DKEISGEEIRLALAEEIEEILKPREQVVDFSDGPRPRIVLFVGVNGSGKTTTIGKIASKL 233 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 + G K +L AGDTFR+AA++QLK+W +R + G+DAA L Y A ++A+A+ +D Sbjct: 234 QEQGAKALLVAGDTFRAAAVEQLKVWGERAGIPVMAGAHGADAAGLVYGAVERAKAEDLD 293 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 ++++DTAGRL N + LM+ +GK++RV+K++DP APH V+ VLDAT GQNAL QVE F Sbjct: 294 LVLVDTAGRLQNKAELMSELGKIVRVMKKIDPDAPHDVILVLDATVGQNALSQVEAFRHT 353 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 AG TGL+MTK+DGTA+GG L+ I H +P++F+G+GE DL PF A+ F+ + G Sbjct: 354 AGVTGLVMTKLDGTAKGGVLVAIAEAHDLPIHFIGIGERAEDLRPFSAEAFAKALVGI 411 >gi|296532246|ref|ZP_06894991.1| cell division protein FtsY [Roseomonas cervicalis ATCC 49957] gi|296267431|gb|EFH13311.1| cell division protein FtsY [Roseomonas cervicalis ATCC 49957] Length = 328 Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 139/301 (46%), Positives = 207/301 (68%), Gaps = 1/301 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L G + ++ +L +G+T + + R+LD+ EELE+ LI +D+GVA +Q+IVE Sbjct: 26 FFARLKAGLSRSTARLTDGLTGLFTRRKLDEAALEELEEALITADLGVAASQRIVERFRK 85 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 R+ K+VS V ++E I +L P++KP D + RPHV+LVVGVNG GKTT I KL Sbjct: 86 TRFGKEVSDTEVKEALAEEIAAILAPVAKPLEIDAAKRPHVVLVVGVNGTGKTTTIAKLG 145 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYEAFKQAQA 191 ++ + G KV AGDTFR+AA++QL+IW +RT A ++ G+DAA LA++A K AQA Sbjct: 146 QQFGEQGKKVAFVAGDTFRAAAVEQLQIWGNRTGAQVHAPAKQGADAAGLAFDALKAAQA 205 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 ++L++DTAGRLHN LM + K++RV++R+DP APHSVL VLDATTGQNA +Q ++ Sbjct: 206 DGTEILLVDTAGRLHNKGALMEELRKVVRVMQRVDPTAPHSVLLVLDATTGQNATQQCKV 265 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F + TGL++TK+DG+A+GG ++ + +PV+ +GVGE DL PF A+D++ + Sbjct: 266 FAEMVNVTGLVVTKLDGSAKGGIVVALAQEFGLPVHAVGVGEKAADLRPFSARDYARSLL 325 Query: 312 G 312 G Sbjct: 326 G 326 >gi|85373608|ref|YP_457670.1| signal recognition particle GTPase [Erythrobacter litoralis HTCC2594] gi|84786691|gb|ABC62873.1| signal recognition particle GTPase [Erythrobacter litoralis HTCC2594] Length = 304 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 142/303 (46%), Positives = 193/303 (63%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 +SW +L GF TS +L E +T +S+ LDD EE+ED LI SD+G A A +I E+L Sbjct: 1 MSWTERLFGGFKKTSDRLSENLTTAVSTATLDDATLEEVEDALIMSDLGPAAASRIREKL 60 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 KR+ +S + + V++ I ++L P++KP RP VILV+GVNG GKTT I K Sbjct: 61 KEKRFGLQISERELKKAVADEIAEILRPVAKPLEITAFPRPQVILVIGVNGSGKTTTIAK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + + +VMLAAGDTFR+AAI+QL WADR V G D A++ ++ K Sbjct: 121 LAHWLVEEDYEVMLAAGDTFRAAAIEQLATWADRVGVPIVKGPQGGDPASIVFDGVKAGT 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + D L++DTAGRL N LM + K+ +VL RL+P APH V+ VLDAT GQNAL Q++ Sbjct: 181 DRGTDALVVDTAGRLQNKRELMDELAKIRKVLGRLNPEAPHDVILVLDATNGQNALSQID 240 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F VAG TGLIMTK+DGTARGG L+ + +P++ +GVGE I+DL PF + VI Sbjct: 241 VFKEVAGVTGLIMTKLDGTARGGVLVAAAEQYGLPIHAIGVGETIDDLRPFDPDLVAKVI 300 Query: 311 TGC 313 G Sbjct: 301 AGI 303 >gi|56459337|ref|YP_154618.1| Signal recognition particle GTPase [Idiomarina loihiensis L2TR] gi|56178347|gb|AAV81069.1| Signal recognition particle GTPase [Idiomarina loihiensis L2TR] Length = 449 Score = 272 bits (696), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 134/299 (44%), Positives = 196/299 (65%), Gaps = 2/299 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W R LT+G TS + G+ + +++DD + EELE L+ +D+GVA KI++ L Sbjct: 138 WAR-LTQGLRRTSGSIGSGLIGVFRGKKIDDDLFEELETQLLMADLGVATTTKIIDNLTK 196 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K + LY++ E + ++L P+ K S P+VIL+ GVNGVGKTT IGKL Sbjct: 197 QADRKQLKDAEALYELLQEQLAEILKPVDKRLEIPESDSPYVILMTGVNGVGKTTTIGKL 256 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +K+ G VMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+A Sbjct: 257 AKQFKAEGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGADSASVLYDALQAAKA 316 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N + LM + K++RV+K+LDP APH V+ LDA TGQNA+ Q ++ Sbjct: 317 RDVDVLIADTAGRLQNKANLMEELKKLVRVMKKLDPEAPHEVMLTLDAGTGQNAISQAKL 376 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G +G++MTK+DGTA+GG + + IP+ ++GVGE + DL PFVAKDF A + Sbjct: 377 FTEAVGVSGIVMTKLDGTAKGGVIFAVADQFAIPIRYIGVGESLEDLRPFVAKDFIAAL 435 >gi|148555838|ref|YP_001263420.1| signal recognition particle-docking protein FtsY [Sphingomonas wittichii RW1] gi|148501028|gb|ABQ69282.1| signal recognition particle-docking protein FtsY [Sphingomonas wittichii RW1] Length = 311 Score = 272 bits (695), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 144/306 (47%), Positives = 193/306 (63%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W KL GF TS +L E +T + LD+ +E+E+ LI SD+G A A +I L Sbjct: 6 WHEKLFGGFRKTSDRLGENLTGLFGKAALDEATLDEIEEALIASDLGPATAGRIRARLKG 65 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 + + K + + + V++ I K+L P++KP + RP VILV+GVNG GKTT I KL+ Sbjct: 66 EMFEKGLDERALREIVAQEIEKVLAPVAKPLEIEAFPRPQVILVIGVNGSGKTTTIAKLA 125 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 + + VML AGDTFR+AAI QLK+WADR + + G DAA L +E KQ K Sbjct: 126 HMLQEQDYAVMLVAGDTFRAAAIGQLKVWADRIGVPIISGKEGGDAAGLVFEGVKQGTEK 185 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 +DVLI+DTAGRL N + LM + K+ RVL RL+ APH VL VLDATTGQNAL Q+E+F Sbjct: 186 GIDVLIVDTAGRLQNKAGLMDELAKIRRVLGRLNTAAPHDVLLVLDATTGQNALSQIEIF 245 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 AG TGLIMTK+DGTARGG L+ +PV+ +G+GEG++DL+PF + + I G Sbjct: 246 KETAGVTGLIMTKLDGTARGGVLVAAAERTGMPVHAIGLGEGVDDLKPFDPAEVARAIAG 305 Query: 313 CLDYGE 318 G+ Sbjct: 306 LERIGK 311 >gi|94495524|ref|ZP_01302104.1| signal recognition particle-docking protein FtsY [Sphingomonas sp. SKA58] gi|94424912|gb|EAT09933.1| signal recognition particle-docking protein FtsY [Sphingomonas sp. SKA58] Length = 310 Score = 272 bits (695), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 139/302 (46%), Positives = 195/302 (64%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 +W +L G TS +L + +T + + LDD +E+E+ LI SD+G A+A ++ + L Sbjct: 5 NWRDRLFGGLKRTSDRLGDNLTGLFTKAALDDQTLDEIEEALIVSDLGPAMAARVRDRLA 64 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 R+ K+++ + + ++E I K L P+++P + RP VILV+GVNG GKTT I KL Sbjct: 65 EGRFNKELTEEYLREIIAEEIEKTLAPVARPLEIEAFPRPQVILVIGVNGSGKTTTIAKL 124 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + VMLAAGDTFR+AAI QLK+WA+R + + G DAA + ++A KQA A Sbjct: 125 AHNFLEQDYGVMLAAGDTFRAAAIGQLKVWAERLGIPIIAGKEGGDAAGIVFDAVKQATA 184 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +DVLI+DTAGRL N + LM + K+ RVL RL+P APH V+ VLDATTGQNAL Q+E+ Sbjct: 185 TGIDVLIVDTAGRLQNKTELMDELAKVRRVLGRLNPAAPHDVVLVLDATTGQNALNQIEV 244 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F A TGL+MTK+DGTARGG L+ ++P++ +GVGE I DL PF D + I Sbjct: 245 FKETAQVTGLVMTKLDGTARGGVLVAAAEKFRLPIHAIGVGEKIEDLRPFDPGDMAKAIA 304 Query: 312 GC 313 G Sbjct: 305 GT 306 >gi|254441406|ref|ZP_05054899.1| signal recognition particle-docking protein FtsY, putative [Octadecabacter antarcticus 307] gi|198251484|gb|EDY75799.1| signal recognition particle-docking protein FtsY, putative [Octadecabacter antarcticus 307] Length = 550 Score = 271 bits (694), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 133/285 (46%), Positives = 193/285 (67%), Gaps = 1/285 (0%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87 L G + R LDD + E LE+LLI +D+GV A ++ + R+ K +S Q + Sbjct: 264 LGRGEKKTVVRRELDDDMLERLEELLISADMGVDTALRVTSNMAEGRFGKRLSTQEIKEL 323 Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 ++ I +++ P+++P + +P V+LVVGVNG GKTT IGKL+ + AG KV++AAG Sbjct: 324 LAAEITRVMEPVARPLPL-YPTKPQVVLVVGVNGSGKTTTIGKLASQFQAAGKKVVIAAG 382 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DTFR+AA++QL++W DR + + GSD A+LAY+A +QA D+L+IDTAGRL N Sbjct: 383 DTFRAAAVEQLQVWGDRAGVPVLTAPQGSDPASLAYDAMEQAARDGADLLMIDTAGRLQN 442 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + LM + K++RV+++ DP APH+ L VLDATTGQNAL QV+ F +A TGLIMTK+D Sbjct: 443 RADLMEELQKIVRVIRKKDPDAPHNTLLVLDATTGQNALSQVKTFQELADVTGLIMTKLD 502 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 GTA+GG L+ + +P++ +GVGE I+DL PF +DF+A +TG Sbjct: 503 GTAKGGVLVALADKFGLPIHAIGVGEQIDDLAPFDPEDFAAALTG 547 >gi|114763008|ref|ZP_01442438.1| Signal recognition particle-docking protein FtsY [Pelagibaca bermudensis HTCC2601] gi|114544332|gb|EAU47340.1| Signal recognition particle-docking protein FtsY [Roseovarius sp. HTCC2601] Length = 462 Score = 271 bits (693), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 133/284 (46%), Positives = 195/284 (68%), Gaps = 1/284 (0%) Query: 29 KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV 88 +E + + R LDD + E LE+LLI SD+GV A ++ + RY K VS Q + + Sbjct: 176 RETPSAPVVRRVLDDDMLESLEELLIASDMGVDTALRVSANIAEGRYGKRVSTQEIKAAL 235 Query: 89 SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 + + +++ P++KP + +P V+LVVGVNG GKTT IGKL+ + AG V++AAGD Sbjct: 236 AAEVARVMDPVAKPLPL-YPKKPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGD 294 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+AA++QL++W DR + + GSD A+LA++A +AQA+ D+L+IDTAGRL N Sbjct: 295 TFRAAAVEQLQVWGDRAGVPVLTAPEGSDPASLAFDAMTKAQAEGADLLMIDTAGRLQNR 354 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM + K++RV+++ DP APH+ L VLDATTGQNAL QVE+F VA +GL+MTK+DG Sbjct: 355 QDLMEELAKIVRVIRKKDPDAPHNTLLVLDATTGQNALTQVEIFRQVADVSGLVMTKLDG 414 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 TA+GG L+ + +P++ +GVGE I+DL PF ++F+A +TG Sbjct: 415 TAKGGVLVALADKFGLPIHAIGVGEQIDDLAPFDPEEFAAALTG 458 >gi|260433210|ref|ZP_05787181.1| signal recognition particle-docking protein FtsY [Silicibacter lacuscaerulensis ITI-1157] gi|260417038|gb|EEX10297.1| signal recognition particle-docking protein FtsY [Silicibacter lacuscaerulensis ITI-1157] Length = 383 Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 131/275 (47%), Positives = 193/275 (70%), Gaps = 1/275 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E+LE+LLI SD+GV A ++ + RY + +S Q + +++ I +++ P Sbjct: 107 RTLDDDMLEQLEELLIASDMGVDTALRVTANMAEGRYGRKLSTQEIKQLLAQEIARVMEP 166 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 ++KP + RP V+LVVGVNG GKTT IGKL+ + AG KV++AAGDTFR+AA++QL Sbjct: 167 VAKPMPL-YPKRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKKVVIAAGDTFRAAAVEQL 225 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W DR + + GSD A+LA++A +AQA D+L+IDTAGRL N + LM + K+ Sbjct: 226 QVWGDRAGVPVLTAPEGSDPASLAFDALTKAQADGADLLMIDTAGRLQNRADLMEELAKI 285 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV++++D APH+ L VLDATTGQNAL QVE F +A +GL+MTK+DGTA+GG L+ + Sbjct: 286 VRVIRKIDETAPHNTLLVLDATTGQNALSQVETFRKLADVSGLVMTKLDGTAKGGVLVAL 345 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 +P++ +GVGE I+DL PF ++F+A +TG Sbjct: 346 ADKFGLPIHAIGVGEQIDDLAPFDPEEFAAALTGL 380 >gi|288957724|ref|YP_003448065.1| signal recognition particle receptor [Azospirillum sp. B510] gi|288910032|dbj|BAI71521.1| signal recognition particle receptor [Azospirillum sp. B510] Length = 402 Score = 270 bits (689), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 151/300 (50%), Positives = 208/300 (69%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W KL +G + +S KL +GIT I + R+LDD EELE+LLI +D+G A A K+ EL Sbjct: 99 WFAKLKEGLSKSSSKLTDGITSIFTKRKLDDDALEELEELLITADLGPATAAKVTAELAR 158 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 R+ K+VS V ++ + K++ P+++P D + +PHV+LVVGVNG GKTT IGKL+ Sbjct: 159 TRFGKEVSPDEVKATLAAEVSKIVSPVARPLVLDPALKPHVVLVVGVNGTGKTTTIGKLA 218 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 ++ G VMLAAGDTFR+AA+ QLKIW +RT V + G+DAA LAY+A ++A+A+ Sbjct: 219 RQFKAEGRSVMLAAGDTFRAAAVSQLKIWGERTGCPVVARDTGADAAGLAYDALERARAE 278 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 VDVL+IDTAGRL N + LM + K++RV+K+LD APH+ L LDATTGQNA QVE+F Sbjct: 279 GVDVLLIDTAGRLQNKTGLMEELRKIVRVIKKLDETAPHTTLLTLDATTGQNAHSQVEIF 338 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + GLI+TK+DG+ARGG L+ + +IPV+ +GVGEG+ DL PF A F+ + G Sbjct: 339 RDMVNVNGLILTKLDGSARGGVLVSLAEKFRIPVHAIGVGEGVYDLRPFDADAFAKSLMG 398 >gi|254450341|ref|ZP_05063778.1| signal recognition particle-docking protein FtsY [Octadecabacter antarcticus 238] gi|198264747|gb|EDY89017.1| signal recognition particle-docking protein FtsY [Octadecabacter antarcticus 238] Length = 409 Score = 269 bits (688), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 132/285 (46%), Positives = 193/285 (67%), Gaps = 1/285 (0%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87 L G + R LDD + E LE+LLI +D+GV A ++ + R+ K +S Q + Sbjct: 123 LGRGDAKTVVRRELDDDMLERLEELLISADMGVDTALRVTSNMAEGRFGKRLSTQEIKEL 182 Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 ++ I +++ P+++P + +P V+LVVGVNG GKTT IGKL+ + AG KV++AAG Sbjct: 183 LAAEITRIMEPVARPMPL-YPTKPQVVLVVGVNGSGKTTTIGKLASQFQAAGKKVVIAAG 241 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DTFR+AA++QL++W DR + + GSD A+LA++A +QA D+L+IDTAGRL N Sbjct: 242 DTFRAAAVEQLQVWGDRAGVPVLTAPEGSDPASLAFDAMEQAACDGADLLMIDTAGRLQN 301 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + LM + K++RV+++ DP APH+ L VLDATTGQNAL QV+ F +A TGLIMTK+D Sbjct: 302 RADLMEELQKIVRVIRKKDPDAPHNTLLVLDATTGQNALSQVKTFQELADVTGLIMTKLD 361 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 GTA+GG L+ + +P++ +GVGE I+DL PF +DF+A +TG Sbjct: 362 GTAKGGVLVALADKFGLPIHAIGVGEQIDDLAPFDPEDFAAALTG 406 >gi|114328162|ref|YP_745319.1| cell division protein ftsY [Granulibacter bethesdensis CGDNIH1] gi|114316336|gb|ABI62396.1| cell division protein ftsY [Granulibacter bethesdensis CGDNIH1] Length = 306 Score = 268 bits (686), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 139/305 (45%), Positives = 209/305 (68%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +L + KL +G A ++ KL +T +IS RRLDD EELE+ LI +D+G +VA +++E Sbjct: 2 ALGFFSKLKEGLARSTQKLTTNLTSVISHRRLDDAALEELEEALIAADLGTSVAARVIEA 61 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 R+ ++V+ + + ++E I ++L P++ P D + +PHVIL+VGVNG GKTT IG Sbjct: 62 FRRTRFGREVTEEEIKTALAEEIARILHPVAIPLEPDLTRKPHVILMVGVNGTGKTTTIG 121 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL++ D GL+ +L AGDTFR+AA++QL++W +R A + G+DAA LA++A +A Sbjct: 122 KLAQSWKDQGLRSILVAGDTFRAAAVEQLQVWGERVGAPVISGPAGADAAGLAFDALAKA 181 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 QA++ D+L+IDTAGRLHN LM + K+IRV+++ D PHS+L VLDATTGQNA+ QV Sbjct: 182 QAEQADILLIDTAGRLHNKGALMEELSKIIRVMRKHDETVPHSILLVLDATTGQNAVEQV 241 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 +F + TGLI+TK+DG+ARGG ++ + +PV+ +GVGE DL PF A +F+ Sbjct: 242 RVFKDMVNITGLIVTKLDGSARGGIVVALAEDFGLPVHAVGVGEKAGDLRPFDAMEFARG 301 Query: 310 ITGCL 314 + G + Sbjct: 302 LVGAV 306 >gi|332185721|ref|ZP_08387468.1| signal recognition particle-docking protein FtsY [Sphingomonas sp. S17] gi|332014079|gb|EGI56137.1| signal recognition particle-docking protein FtsY [Sphingomonas sp. S17] Length = 311 Score = 268 bits (686), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 147/306 (48%), Positives = 190/306 (62%), Gaps = 1/306 (0%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 S S SW KL GF TS +L + + + RLD+ +E+E+ LI SD+G A I Sbjct: 2 SSSPSWHEKLLGGFRRTSDRLVGNLAGL-GTARLDEDTLDEIEEALIASDLGPETAGHIR 60 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L + +++ + V+E + K L ++ P D RP VILV+GVNG GKTT Sbjct: 61 TRLSEGSFERNMEDLGIRLVVAEEVEKALAKVATPLEIDAFPRPQVILVIGVNGSGKTTT 120 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 I KL+ + VMLAAGDTFR+AAI QL WA+R V + G DAA + YEA K Sbjct: 121 IAKLAHLFMEQDYGVMLAAGDTFRAAAIGQLATWAERVGVPIVSGKEGGDAAGIVYEAVK 180 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 QA A VDVLI+DTAGRL N LM + K+ RVL RL+P APH +L VLDATTGQNAL Sbjct: 181 QATATGVDVLIVDTAGRLQNKRELMDELSKIRRVLGRLNPEAPHDILLVLDATTGQNALN 240 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 Q+E+F VAG TGL+MTK+DGTARGG L+ + +P++ +GVGEG+ DL PF A + S Sbjct: 241 QIEVFKDVAGVTGLVMTKLDGTARGGVLVAAAEKYGLPIHAIGVGEGMTDLRPFDANEVS 300 Query: 308 AVITGC 313 +I G Sbjct: 301 RIIAGI 306 >gi|87199421|ref|YP_496678.1| signal recognition particle-docking protein FtsY [Novosphingobium aromaticivorans DSM 12444] gi|87135102|gb|ABD25844.1| signal recognition particle-docking protein FtsY [Novosphingobium aromaticivorans DSM 12444] Length = 308 Score = 268 bits (685), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 145/303 (47%), Positives = 188/303 (62%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW ++ GF TS +L E + I+ S RL + ++LED LI SD+G A +I E L Sbjct: 5 SWSDRILGGFRKTSERLAENLGGIVGSSRLTEAQLDDLEDALILSDLGPRAAARIRERLK 64 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 R+ V Q + V+E I +L P++KP RP VILV+GVNG GKTT I KL Sbjct: 65 GARFENGVDEQGLKEAVAEEIAAILRPVAKPLEIVAFPRPQVILVIGVNGSGKTTTIAKL 124 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + VMLAAGDTFR+AAI QLK+WADR V G D A++ ++A K A Sbjct: 125 AHLFQEQDYGVMLAAGDTFRAAAIGQLKVWADRLGVPIVTGPEGGDPASIVFDAVKAATD 184 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +D LI+DTAGRL N LM + K+ RVL RL+P APH V+ VLDAT GQNAL+Q+E+ Sbjct: 185 TGIDTLIVDTAGRLQNKRELMDELAKVRRVLGRLNPAAPHDVVLVLDATNGQNALQQIEI 244 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F VAG TGLIMTK+DGTARGG L+ + +P++ +GVGE I+DL PF + VI Sbjct: 245 FKEVAGVTGLIMTKLDGTARGGVLVAAAEQYGLPIHAIGVGEKIDDLRPFDPDLVAKVIA 304 Query: 312 GCL 314 G Sbjct: 305 GVF 307 >gi|89053705|ref|YP_509156.1| signal recognition particle-docking protein FtsY [Jannaschia sp. CCS1] gi|88863254|gb|ABD54131.1| signal recognition particle-docking protein FtsY [Jannaschia sp. CCS1] Length = 381 Score = 268 bits (685), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 131/275 (47%), Positives = 192/275 (69%), Gaps = 1/275 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E+LE+LLI SD+GV +A ++ + RY K +S + ++ I +++ P Sbjct: 105 RALDDDMLEQLEELLIASDMGVDIALRVTANMAEGRYGKMLSATEIKELLASEITRVMEP 164 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +++P + P V+LVVGVNG GKTT IGKLS + AG KV++AAGDTFR+AA++QL Sbjct: 165 VARPLPI-YPKTPQVVLVVGVNGSGKTTTIGKLSSQFRAAGKKVVIAAGDTFRAAAVEQL 223 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W DR + + GSD AALAY+A +A+A D+L+IDTAGRL N + LM + K+ Sbjct: 224 QVWGDRAGVPVLTAPEGSDPAALAYDAMVKAEADGADLLMIDTAGRLQNRADLMEELAKI 283 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+++ DP APH+ L VLDATTGQNALRQVE+F +A +GL+MTK+DGTA+GG L+ + Sbjct: 284 VRVIRKKDPDAPHNTLLVLDATTGQNALRQVELFGQMADVSGLVMTKLDGTAKGGVLVAL 343 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 +P++ +GVGE I+DL+PF ++F+ + G Sbjct: 344 ADKFGLPIHAIGVGEQIDDLQPFDPEEFADALVGL 378 >gi|162148087|ref|YP_001602548.1| cell division protein ftsY [Gluconacetobacter diazotrophicus PAl 5] gi|209542701|ref|YP_002274930.1| signal recognition particle-docking protein FtsY [Gluconacetobacter diazotrophicus PAl 5] gi|161786664|emb|CAP56247.1| Cell division protein ftsY [Gluconacetobacter diazotrophicus PAl 5] gi|209530378|gb|ACI50315.1| signal recognition particle-docking protein FtsY [Gluconacetobacter diazotrophicus PAl 5] Length = 326 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 143/303 (47%), Positives = 204/303 (67%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +L + +L G + ++ KL GI + + R+LDD EELEDLLI +D+G AVA +I+E Sbjct: 2 ALGFFSRLKAGLSRSTQKLGGGIAAVFTRRKLDDEALEELEDLLISADLGPAVAARIIES 61 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 R+ +V+ V +S I ++L P++ PF D +PHV+LVVGVNG GKTT IG Sbjct: 62 FRHSRFGAEVTDDEVRDALSAEIAQVLEPVAVPFVPDPQRKPHVVLVVGVNGTGKTTTIG 121 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 K+++ + GLKVM+ AGDTFR+AA++QL++W R A + +DAA LA+EA K+ Sbjct: 122 KMARYYGEQGLKVMMVAGDTFRAAAVEQLQVWGQRVGAPVIAGPPNADAAGLAFEALKRG 181 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 QA+ D+L+IDTAGRLHN LM + K+IRV+++ D APHSVL VLDATTGQNA+ QV Sbjct: 182 QAEGCDLLLIDTAGRLHNKGALMEELAKIIRVMRKFDESAPHSVLLVLDATTGQNAIEQV 241 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 +F + TGL++TK+DG+ARGG ++ + T +PV+ +GVGE DL PF A+ F+ Sbjct: 242 RVFKELVNVTGLVVTKLDGSARGGIVVALADTFGLPVHAVGVGEQAEDLRPFSAEAFARG 301 Query: 310 ITG 312 + G Sbjct: 302 LVG 304 >gi|71278165|ref|YP_266925.1| signal recognition particle-docking protein FtsY [Colwellia psychrerythraea 34H] gi|71143905|gb|AAZ24378.1| signal recognition particle-docking protein FtsY [Colwellia psychrerythraea 34H] Length = 481 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 133/301 (44%), Positives = 196/301 (65%), Gaps = 1/301 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 A L + +L +G + T L G+ D+ +++DD + EELE L+ +D+GV KI Sbjct: 174 AESKLGFFARLKQGLSKTRQNLGGGLIDLFRGKQIDDDLFEELETHLLLADVGVETTMKI 233 Query: 67 VEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 +E L K + LYD+ ++ + K++ +S+P P VIL+VGVNGVGKT Sbjct: 234 IESLTQSANRKQLKDASALYDLLKIELKKVIEDVSQPLVIPEDDGPFVILMVGVNGVGKT 293 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K+ G VMLAAGDTFR+AA++QL++W +R + + G+D+A++ ++A Sbjct: 294 TTIGKLAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQHTGADSASVIFDA 353 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+A+KVD++I DTAGRL N + LM + K++RV+K+LD +APH V+ LDA TGQNA Sbjct: 354 ISAAKARKVDIIIADTAGRLQNKAHLMEELKKVVRVMKKLDVNAPHEVMLTLDAGTGQNA 413 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L Q ++F G TGL +TK+DGTA+GG + + H IP+ +LGVGEGI+DL PF + D Sbjct: 414 LSQTKLFDEAVGLTGLTITKLDGTAKGGVIFAVADKHSIPIRYLGVGEGIDDLRPFNSDD 473 Query: 306 F 306 F Sbjct: 474 F 474 >gi|56551966|ref|YP_162805.1| signal recognition particle-docking protein FtsY [Zymomonas mobilis subsp. mobilis ZM4] gi|241761948|ref|ZP_04760033.1| signal recognition particle-docking protein FtsY [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752487|ref|YP_003225380.1| signal recognition particle-docking protein FtsY [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543540|gb|AAV89694.1| signal recognition particle-docking protein FtsY [Zymomonas mobilis subsp. mobilis ZM4] gi|241373628|gb|EER63200.1| signal recognition particle-docking protein FtsY [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258551850|gb|ACV74796.1| signal recognition particle-docking protein FtsY [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 310 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 138/305 (45%), Positives = 194/305 (63%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 SE W +K+ G TS +L E ++ I LDD +E+E+ LI D+G A +I Sbjct: 2 SEETPWYKKIGFGLKRTSERLTENLSSIALKAALDDETLDEIEETLIACDLGPGTAGRIR 61 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 E L +R+ + V+ V V++ I K+L P++KP D RP VILV+GVNG GKTT Sbjct: 62 ERLAGERFPQGVTELEVREVVAQEIAKILKPVAKPIEIDAFPRPQVILVIGVNGSGKTTT 121 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 I KL+ + +VML AGDTFR+AAI QLK+WA+R + G+DAA+L ++ K Sbjct: 122 IAKLAHWFQELDYEVMLVAGDTFRAAAIGQLKVWAERLEIPIISGAEGADAASLVFQGVK 181 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 + A+ D LI+DTAGRL N S LM + K+ +VL RL+P APH+V+ VLDAT GQNAL Sbjct: 182 EGTAQGTDTLIVDTAGRLQNKSGLMDELAKIKKVLGRLNPAAPHNVILVLDATNGQNALS 241 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 Q+E+F +AG +GLIMTK+DGTARGG ++ + +P++ +GVGE ++DL PF + + Sbjct: 242 QIEVFKEIAGVSGLIMTKLDGTARGGIMVAAAEKYGLPIHAIGVGESMDDLRPFDPEAVA 301 Query: 308 AVITG 312 I G Sbjct: 302 RAIVG 306 >gi|255261414|ref|ZP_05340756.1| cell division protein FtsY [Thalassiobium sp. R2A62] gi|255103749|gb|EET46423.1| cell division protein FtsY [Thalassiobium sp. R2A62] Length = 574 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 130/286 (45%), Positives = 194/286 (67%), Gaps = 1/286 (0%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87 L G + R LDD + E LE+LLI +D+GV A ++ + R+ K +SV + Sbjct: 288 LGRGEKKTVVRRALDDDMLESLEELLITADMGVHTALRVTANMAEGRFGKKLSVDEIKEL 347 Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 ++ + +++ P++KP ++ +P V+LVVGVNG GKTT IGKL+ + AG V++AAG Sbjct: 348 LASEVTRIMEPVAKPMPL-YAKKPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAG 406 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DTFR+AA++QL++W DR + + GSD A+LA++A QA+A D+L+IDTAGRL N Sbjct: 407 DTFRAAAVEQLQVWGDRAGVPVLTAPEGSDPASLAFDAMTQAEADGADLLMIDTAGRLQN 466 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + LM + K++RV+++ DP APH+ L VLDATTGQNAL QV+ F +A +GL+MTK+D Sbjct: 467 RADLMEELAKIVRVIRKKDPEAPHNTLLVLDATTGQNALSQVKTFQELADVSGLVMTKLD 526 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 GTA+GG L+ + +P++ +GVGE I+DL PF +DF+A +TG Sbjct: 527 GTAKGGVLVALADKFGLPIHAIGVGEQIDDLAPFDPEDFAAALTGL 572 >gi|85706875|ref|ZP_01037966.1| signal recognition particle-docking protein FtsY [Roseovarius sp. 217] gi|85668668|gb|EAQ23538.1| signal recognition particle-docking protein FtsY [Roseovarius sp. 217] Length = 397 Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 131/286 (45%), Positives = 195/286 (68%), Gaps = 1/286 (0%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87 L G ++ R LDD + E LE+LLI +D+GV A ++ + R K +S Q + Sbjct: 110 LGRGAGEVAPRRVLDDAMLESLEELLIGADMGVDTALRVTANMAEGRMGKRLSTQEIKEL 169 Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 +++ I +++ P+++P ++ RP V+LVVGVNG GKTT IGKL+ + AG V++AAG Sbjct: 170 LAQEIARIMDPVARPMPI-YAKRPQVVLVVGVNGSGKTTTIGKLAAQFKSAGKSVVIAAG 228 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DTFR+AA++QL++W +R + + GSD A+LAY+A +A+A+ D+L+IDTAGRL N Sbjct: 229 DTFRAAAVEQLQVWGERAGVPVMTAPEGSDPASLAYDAMTRAEAEGADLLMIDTAGRLQN 288 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + LM + K++RV+++ DP APH+ L VLDATTGQNAL QV F +A +GLIMTK+D Sbjct: 289 RADLMEELAKIVRVIRKKDPSAPHNTLLVLDATTGQNALSQVATFQKLADVSGLIMTKLD 348 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 GTARGG L+ + +P++ +GVGE I+DL PF ++F+A +TG Sbjct: 349 GTARGGVLVALADKFGLPIHAIGVGEQIDDLAPFDPQEFAAALTGL 394 >gi|103488209|ref|YP_617770.1| signal recognition particle-docking protein FtsY [Sphingopyxis alaskensis RB2256] gi|98978286|gb|ABF54437.1| signal recognition particle-docking protein FtsY [Sphingopyxis alaskensis RB2256] Length = 308 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 137/303 (45%), Positives = 193/303 (63%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW +L GF TS +L E + + RLD+ + +E+ LI +D+G A+A +I + L Sbjct: 5 SWSERLLGGFRRTSERLGENLAGLTGKARLDEADLDRIEEALITADLGPAMAARIRDRLA 64 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +R + + V++ I +L P+++P + D RP VILV+GVNG GKTT I KL Sbjct: 65 ERRDVAANGTEELRQIVADEIAAVLRPVAEPLDIDAFPRPQVILVIGVNGSGKTTTIAKL 124 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + VML AGDTFR+AAI QLKIWA+R + G D+A + ++A K+A A Sbjct: 125 AHLFQEQDYGVMLVAGDTFRAAAIGQLKIWAERLGVPIMAGPEGGDSAGIVFDAVKRATA 184 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +DVLI+DTAGRL N LM + K+ RVL RL+P APH V+ VLDATTGQNAL Q+++ Sbjct: 185 TGIDVLIVDTAGRLQNKRELMDELAKIKRVLGRLNPAAPHDVVLVLDATTGQNALSQIDV 244 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F VAG TGL+MTK+DGTARGG L+ H +P++ +G+GE + DL PF A + + +I Sbjct: 245 FREVAGVTGLVMTKLDGTARGGVLVAAAERHGLPIHAIGIGETMEDLRPFDADEIAGIIA 304 Query: 312 GCL 314 G + Sbjct: 305 GNI 307 >gi|331007678|ref|ZP_08330814.1| Signal recognition particle receptor protein FtsY [gamma proteobacterium IMCC1989] gi|330418521|gb|EGG93051.1| Signal recognition particle receptor protein FtsY [gamma proteobacterium IMCC1989] Length = 399 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 147/311 (47%), Positives = 206/311 (66%), Gaps = 7/311 (2%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 SL++ +++ KG + TS +L EGI ++ + +DD + EELE L+ +D+G+ +I++ Sbjct: 77 SLAFFQRIKKGLSRTSSQLVEGIASVVLGKKHIDDELLEELETQLLMADVGIDATTQIID 136 Query: 69 ELLTKRYAKDVSVQRVLY-----DVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGV 122 +L K ++ LY + +L+ P+ +P D P V LVVGVNGV Sbjct: 137 KLTKAVERKQLNDGDSLYAALQQQLRDLLVDTQAPMMIQPQFADGKKMPMVTLVVGVNGV 196 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K++ + G +VMLAAGDTFR+AA++QLKIW DR V + G+D+A++ Sbjct: 197 GKTTTIGKLTKRLQNEGKQVMLAAGDTFRAAAVEQLKIWGDRNQVAVVSQDTGADSASVI 256 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A AQAK +DVLI DTAGRLHN S LM + K+ RV+ +LDP+APH VL VLDA TG Sbjct: 257 YDALSSAQAKGIDVLIADTAGRLHNKSHLMDELAKVKRVMAKLDPNAPHEVLLVLDAGTG 316 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL Q E F AG TGL++TK+DGTA+GG + + K+P+ F+GVGEGI+DL+PFV Sbjct: 317 QNALSQAEHFIKAAGVTGLVLTKLDGTAKGGIVFALSERFKLPIRFIGVGEGIDDLQPFV 376 Query: 303 AKDFSAVITGC 313 A DF + G Sbjct: 377 ADDFVRALFGT 387 >gi|254510515|ref|ZP_05122582.1| signal recognition particle-docking protein FtsY [Rhodobacteraceae bacterium KLH11] gi|221534226|gb|EEE37214.1| signal recognition particle-docking protein FtsY [Rhodobacteraceae bacterium KLH11] Length = 379 Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 133/296 (44%), Positives = 200/296 (67%), Gaps = 3/296 (1%) Query: 18 TKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77 T+G +E T I R LDD + E+LE+LLI SD+GV A ++ + R+ + Sbjct: 85 TRGLLGKLFNRREDRTAI--RRTLDDDMLEQLEELLIASDMGVDTALRVTANMAEGRFGR 142 Query: 78 DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137 +S Q + +++ + +++ P++KP + RP V+LVVGVNG GKTT IGKL+ + Sbjct: 143 KLSTQEIKALLAQEVARVMDPVAKPMPL-YPKRPQVVLVVGVNGSGKTTTIGKLASQFKA 201 Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197 AG KV++AAGDTFR+AA++QL++W DR + + GSD A+LA++A +AQ + D+L Sbjct: 202 AGKKVVIAAGDTFRAAAVEQLQVWGDRAGVPVLTAPEGSDPASLAFDALTKAQNEGTDLL 261 Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257 +IDTAGRL N + LM + K++RV++++D APH+ L VLDATTGQNAL QVE F +A Sbjct: 262 MIDTAGRLQNRADLMEELAKIVRVIRKVDDTAPHNTLLVLDATTGQNALSQVETFRKLAD 321 Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 +GL+MTK+DGTA+GG L+ + +P++ +GVGE I+DL PF ++F+A +TG Sbjct: 322 VSGLVMTKLDGTAKGGVLVALADKFGLPIHAIGVGEQIDDLAPFDPEEFAAALTGL 377 >gi|149186850|ref|ZP_01865160.1| signal recognition particle GTPase [Erythrobacter sp. SD-21] gi|148829517|gb|EDL47958.1| signal recognition particle GTPase [Erythrobacter sp. SD-21] Length = 307 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 138/302 (45%), Positives = 190/302 (62%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW +L GF TS +L E + + ++ +LDD +++ED LI SD+G + A +I E L Sbjct: 5 SWTERLFGGFKKTSERLSENLAEAVTKAKLDDATLDDVEDALIMSDLGPSAAARIRERLK 64 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 KR+ ++S + V+E I +L P++KP RP V+LV+GVNG GKTT I KL Sbjct: 65 EKRFGLEISADELKEAVAEEIAAILRPVAKPLEITAFPRPQVLLVIGVNGSGKTTTIAKL 124 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + VMLAAGDTFR+AAI QL+ WADR V G D A++ ++A ++ Sbjct: 125 AHLFVEDDYNVMLAAGDTFRAAAIGQLQTWADRVGVPIVRGPEGGDPASIVFDAVRKGTE 184 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 DVLI+DTAGRL N LM + K+ +VL RL+P APH V+ VLDAT GQNAL Q+++ Sbjct: 185 IGTDVLIVDTAGRLQNKRELMDELAKIRKVLGRLNPEAPHDVVLVLDATNGQNALSQIDV 244 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F VAG TGL+MTK+DGTARGG L+ + +P++ +GVGE I+DL PF + VI Sbjct: 245 FKEVAGVTGLVMTKLDGTARGGVLVQAAKKYGLPIHAIGVGEKIDDLRPFDPDLVARVIA 304 Query: 312 GC 313 G Sbjct: 305 GI 306 >gi|119384655|ref|YP_915711.1| signal recognition particle-docking protein FtsY [Paracoccus denitrificans PD1222] gi|119374422|gb|ABL70015.1| signal recognition particle-docking protein FtsY [Paracoccus denitrificans PD1222] Length = 346 Score = 266 bits (680), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 129/277 (46%), Positives = 192/277 (69%), Gaps = 1/277 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + EELE++LI++D+GV A ++ + R + VS + +++ I +++ P Sbjct: 71 RELDDAMLEELEEMLIQADMGVETALRVTANIAEGRMGRRVSATELKELLADEIARIMTP 130 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 ++KP + RP V+LVVGVNG GKTT IGKL+ + AG KV++AAGDTFR+AA++QL Sbjct: 131 VAKPLPL-YPKRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKKVVIAAGDTFRAAAVEQL 189 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W R + + GSD A+LA++A +A+A+ D+L+IDTAGRL N LM + K+ Sbjct: 190 QVWGQRAGVPVMTAPEGSDPASLAFDAMTKAEAEGADLLMIDTAGRLQNRQDLMEELAKI 249 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+++ DP APH+ L VLDATTGQNAL QVE+F +A +GL+MTK+DGTARGG L+ + Sbjct: 250 VRVIRKKDPSAPHNTLLVLDATTGQNALSQVEIFRKLADVSGLVMTKLDGTARGGVLVAL 309 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P++ +GVGE I+DL+ F A+DF+ + G D Sbjct: 310 ADRFGLPIHAIGVGEQIDDLDAFDARDFARALVGLGD 346 >gi|197103597|ref|YP_002128974.1| signal recognition particle-docking protein FtsY [Phenylobacterium zucineum HLK1] gi|196477017|gb|ACG76545.1| signal recognition particle-docking protein FtsY [Phenylobacterium zucineum HLK1] Length = 314 Score = 266 bits (680), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 130/304 (42%), Positives = 199/304 (65%), Gaps = 1/304 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 W ++LT+G +S ++ + I + +++ LD +ELE++LI +D+G A +I Sbjct: 8 WFQRLTQGLTKSSKQMGDQIASVFTAKEPLDQAKLDELEEMLIEADLGPHSAARITARFA 67 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +++ KDV + + +++ I L F+ RP+V+L +GVNG GKTT +GK+ Sbjct: 68 EEKFGKDVGEEEIKEALAQAIGDELSSRQGGFDPLSGPRPYVVLFIGVNGSGKTTTLGKI 127 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + G KV++ AGDTFR+AA++QLK+WA+R ADF+ GSDAA LA++A ++A+A Sbjct: 128 AADLRSRGAKVLIVAGDTFRAAAVEQLKVWAERAGADFMGRPTGSDAAGLAFDAVQRAKA 187 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + DV++IDTAGRL N LM + K+IRV+K+LDP APH L VLDAT G+NAL Q + Sbjct: 188 EGYDVVLIDTAGRLQNKQGLMDELLKIIRVVKKLDPEAPHETLLVLDATVGRNALNQENI 247 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F G +G++MTK+DGTARGG L+P+ P+ +GVGEGI+DL+PF A+ F+ + Sbjct: 248 FGNQIGVSGIVMTKLDGTARGGVLVPVAQASDSPIKLIGVGEGIDDLQPFDARAFARSLV 307 Query: 312 GCLD 315 G + Sbjct: 308 GLAE 311 >gi|84500000|ref|ZP_00998266.1| signal recognition particle-docking protein FtsY [Oceanicola batsensis HTCC2597] gi|84391934|gb|EAQ04202.1| signal recognition particle-docking protein FtsY [Oceanicola batsensis HTCC2597] Length = 440 Score = 266 bits (679), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 131/275 (47%), Positives = 190/275 (69%), Gaps = 1/275 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E+LE+LLI SD+GV A ++ + R + +S + +++ + +++ P Sbjct: 161 RALDDDMLEQLEELLIASDMGVDTALRVASNMAEGRMGRRLSTAEIKGLLADEVTRIMEP 220 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +++P F +P V+LVVGVNG GKTT IGKL+ + AG V++AAGDTFR+AA++QL Sbjct: 221 VARPLPL-FPKKPQVVLVVGVNGSGKTTTIGKLASQFRGAGKSVVIAAGDTFRAAAVEQL 279 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 +IW DR + + GSD AALAY+A ++A+A+ D+L+IDTAGRL N + LM + K+ Sbjct: 280 EIWGDRAGVPVLKAAEGSDPAALAYDALEKAEAEGADLLMIDTAGRLQNRADLMEELAKI 339 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RVL++ DP APH+ L VLDATTGQNAL QVE F +A TGL+MTK+DGTA+GG L+ + Sbjct: 340 VRVLRKRDPSAPHNTLLVLDATTGQNALSQVETFRKMADVTGLVMTKLDGTAKGGVLVAL 399 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 +P++ +GVGE I+DL PF DF+ +TG Sbjct: 400 ADKFGLPIHAIGVGEQIDDLAPFDPGDFARALTGA 434 >gi|163740777|ref|ZP_02148170.1| signal recognition particle-docking protein FtsY [Phaeobacter gallaeciensis 2.10] gi|161385768|gb|EDQ10144.1| signal recognition particle-docking protein FtsY [Phaeobacter gallaeciensis 2.10] Length = 415 Score = 265 bits (678), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 127/274 (46%), Positives = 192/274 (70%), Gaps = 1/274 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E+LEDLL+ +D+GV A ++ + R K +S + + ++ + +++ P Sbjct: 139 RALDDDMLEQLEDLLVGADMGVDTALRVTANMAEGRLGKRLSTREIKELLAAEVARIMEP 198 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +++P ++ RP V+LVVGVNG GKTT IGKL+ + AG KV++AAGDTFR+AA++QL Sbjct: 199 VARPMPI-YAKRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKKVVIAAGDTFRAAAVEQL 257 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W DR + + GSD A+LA++A +AQ + D+L+IDTAGRL N + LM + K+ Sbjct: 258 QVWGDRAGVPVLTAPEGSDPASLAFDAMTRAQEEGADLLMIDTAGRLQNRADLMEELAKI 317 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+++ DP APH+ L VLDATTGQNAL QV+ F +A +GL+MTK+DGTA+GG L+ + Sbjct: 318 VRVIQKKDPSAPHNTLLVLDATTGQNALNQVDTFQKLADVSGLVMTKLDGTAKGGVLVAL 377 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +P++ +GVGE I+DL PF +DF+A +TG Sbjct: 378 ADRFGLPIHAIGVGEQIDDLAPFDPEDFAAALTG 411 >gi|149202012|ref|ZP_01878986.1| signal recognition particle-docking protein FtsY [Roseovarius sp. TM1035] gi|149145060|gb|EDM33089.1| signal recognition particle-docking protein FtsY [Roseovarius sp. TM1035] Length = 403 Score = 265 bits (677), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 129/279 (46%), Positives = 191/279 (68%), Gaps = 1/279 (0%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH 93 D R LDD + E LE+LLI +D+GV A ++ + R K +S Q + +++ I Sbjct: 122 DSAPRRVLDDAMLESLEELLIAADMGVDTALRVTANMAEGRMGKRLSTQEIKELLAQEIA 181 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 +++ P+++P ++ RP V+LVVGVNG GKTT IGKL+ + AG V++AAGDTFR+A Sbjct: 182 RIMEPVARPMPI-YAKRPQVVLVVGVNGSGKTTTIGKLAAQFKGAGKSVVIAAGDTFRAA 240 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A++QL++W R + + GSD A+LA++A +A+A+ D+L+IDTAGRL N + LM Sbjct: 241 AVEQLQVWGQRAGVPVMTAPEGSDPASLAFDAMTRAEAEGADLLMIDTAGRLQNRADLME 300 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + K++RV+++ DP APH+ L VLDATTGQNAL QV F +A +GL+MTK+DGTARGG Sbjct: 301 ELAKIVRVIRKKDPSAPHNTLLVLDATTGQNALSQVATFQKLADVSGLVMTKLDGTARGG 360 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 L+ + +P++ +GVGE I+DL PF +DF+A +TG Sbjct: 361 VLVALADKFGLPIHAIGVGEQIDDLAPFDPQDFAAALTG 399 >gi|257455444|ref|ZP_05620679.1| cell division protein FtsY [Enhydrobacter aerosaccus SK60] gi|257447406|gb|EEV22414.1| cell division protein FtsY [Enhydrobacter aerosaccus SK60] Length = 404 Score = 265 bits (677), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 135/296 (45%), Positives = 193/296 (65%), Gaps = 2/296 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 W ++ +G + + L EG+T+I I + +DD + EE+ED L+ +DIGV +I++ L Sbjct: 100 WFSRMKQGLSKSRKNLTEGLTNILIGGKEIDDELLEEVEDQLLVADIGVNATNRIIKNLT 159 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 D+ LY + + + +L P P D S +P VILVVGVNGVGKTT IGK Sbjct: 160 EATARGDLIYSHSLYKALQKELTDILTPKVAPLVVDASTKPFVILVVGVNGVGKTTTIGK 219 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K++ G VMLAAGDTFR+AA +QL++W +R + V GSD+A++ ++A + A+ Sbjct: 220 LAKRLQGEGKSVMLAAGDTFRAAATEQLQVWGERNNIPVVAQGHGSDSASVIFDAIQSAK 279 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DVLI DTAGRL N + LM + K+IRV+++ DP APH + VLDA TGQNAL QVE Sbjct: 280 ARGIDVLIADTAGRLQNKTNLMEELKKVIRVMQKADPTAPHESMIVLDAGTGQNALNQVE 339 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F+ TG+ +TK+DGTA+GG + I +P+ F+GVGE I+DL PF A DF Sbjct: 340 IFNEAVPLTGVTVTKLDGTAKGGVVFNIAENTNVPIRFIGVGEKIDDLRPFQADDF 395 >gi|209965480|ref|YP_002298395.1| cell division ABC transporter, periplasmic substrate-binding protein FtsY [Rhodospirillum centenum SW] gi|209958946|gb|ACI99582.1| cell division ABC transporter, periplasmic substrate-binding protein FtsY [Rhodospirillum centenum SW] Length = 402 Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 143/305 (46%), Positives = 207/305 (67%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 E W +L G + ++ +L EGI+ I + R+LDD EELE+LLIR+D+G A ++ Sbjct: 95 PERKGWFARLKDGLSKSTSRLTEGISGIFTKRKLDDEALEELEELLIRADLGPTTAARMT 154 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L R+ K+VS Q V ++ + K++ P+++P + RPHVIL+VGVNG GKTT Sbjct: 155 AGLARTRFGKEVSPQEVREYLAGEVQKLVEPVARPLVIEPERRPHVILLVGVNGTGKTTT 214 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL++++ + G V +AAGDTFR+AA+ QLK+W +RT V + G+DAA LA+EA + Sbjct: 215 IGKLARQLREEGKTVWMAAGDTFRAAAVSQLKVWGERTGCPVVAKDTGADAAGLAFEALE 274 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 +A+A DVL+IDTAGRL N + LM + K++RV+K+LDP APH+ L LDATTGQNA Sbjct: 275 KARAAGADVLLIDTAGRLQNKTGLMEELRKIVRVIKKLDPEAPHTTLLTLDATTGQNAHS 334 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 QVE+F + GL++TK+DG+ARGG L+ + +PV+ +GVGEG+ DL PF A+ F+ Sbjct: 335 QVEVFKEMVAINGLVLTKLDGSARGGVLVALAEKFGLPVHAIGVGEGVYDLRPFDARQFA 394 Query: 308 AVITG 312 + G Sbjct: 395 RALVG 399 >gi|93006307|ref|YP_580744.1| signal recognition particle-docking protein FtsY [Psychrobacter cryohalolentis K5] gi|92393985|gb|ABE75260.1| signal recognition particle-docking protein FtsY [Psychrobacter cryohalolentis K5] Length = 477 Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 139/313 (44%), Positives = 201/313 (64%), Gaps = 4/313 (1%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIG 59 + ++ +S+ SW ++ G + + L EG+ I I + +DD + EE+ED L+ +DIG Sbjct: 159 LQEEQESSKKGSWFNRMKTGLSKSRKNLAEGMVSILIGGKEIDDELLEEVEDQLLVADIG 218 Query: 60 VAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVV 117 V +I++ L + D+ LY +EL+ +L P P D S +P VILVV Sbjct: 219 VNATNRIIKSLTEQTDRGDLIYAHSLYKALQTELVD-ILTPKVAPLIIDSSKKPFVILVV 277 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 GVNGVGKTT IGKL+K++ G VMLAAGDTFR+AA +QL+IW +R V GSD Sbjct: 278 GVNGVGKTTTIGKLAKRLQGEGKSVMLAAGDTFRAAATEQLQIWGERNHIPVVAQGHGSD 337 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 +A++ ++A + A+AK +DVLI DTAGRL N + LMA + K++RV+++ DP APH + VL Sbjct: 338 SASVIFDAMQSAKAKNIDVLIADTAGRLQNKTHLMAELEKVVRVMRKADPSAPHEGMIVL 397 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA TGQNA+ QVE+F+ V TG+ +TK+DGTA+GG + I T +P+ ++GVGE I+D Sbjct: 398 DAGTGQNAINQVELFNKVVPLTGITITKLDGTAKGGVVFNIAETTDVPIRYIGVGESIDD 457 Query: 298 LEPFVAKDFSAVI 310 L F K F A + Sbjct: 458 LRAFSPKQFVAAL 470 >gi|84515411|ref|ZP_01002773.1| Signal recognition particle-docking protein FtsY [Loktanella vestfoldensis SKA53] gi|84510694|gb|EAQ07149.1| Signal recognition particle-docking protein FtsY [Loktanella vestfoldensis SKA53] Length = 323 Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 129/275 (46%), Positives = 192/275 (69%), Gaps = 1/275 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + EELEDLLI +D+GV AQ+++ + K VSV+ V + + +++ P Sbjct: 48 RALDDAMLEELEDLLIAADMGVETAQRVIANIAEGHLGKRVSVEEVKRLLMAEVVRIMEP 107 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +++P ++ P V+LVVGVNG GKTT IGKL+ + AG V++AAGDTFR+AA++QL Sbjct: 108 VARPLPI-YAKTPQVVLVVGVNGSGKTTTIGKLASQFRAAGKNVVIAAGDTFRAAAVEQL 166 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W R + + GSD A+LAY+A +AQA D+L+IDTAGRL N + LM + K+ Sbjct: 167 QVWGQRAGVPVLTAPEGSDPASLAYDAMTKAQADGADLLMIDTAGRLQNRADLMEELSKI 226 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+++ DP APH+VL VLDATTGQNA++QV++F +A +GL+MTK+DGTA+GG L+ + Sbjct: 227 VRVIRKKDPDAPHNVLLVLDATTGQNAVQQVKVFQELAAVSGLVMTKLDGTAKGGVLVSL 286 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 +P++ +GVGE I+DL PF ++F+A + G Sbjct: 287 ADRFGLPIHAIGVGEQIDDLAPFDPEEFAAALVGL 321 >gi|126733156|ref|ZP_01748903.1| signal recognition particle-docking protein FtsY [Roseobacter sp. CCS2] gi|126716022|gb|EBA12886.1| signal recognition particle-docking protein FtsY [Roseobacter sp. CCS2] Length = 315 Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 126/278 (45%), Positives = 194/278 (69%), Gaps = 1/278 (0%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95 + R LDD + E+LE+LLI +D+GV A ++ + R + +SVQ + +++ + ++ Sbjct: 37 VVKRTLDDDMLEQLEELLITADMGVDTALRVTANMAEGRLGRKLSVQEIKELMAQEVSRI 96 Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 + P+++P ++ P V+LVVGVNG GKTT IGKL+ + AG KV++AAGDTFR+AA+ Sbjct: 97 MEPVARPMPL-YTKTPQVVLVVGVNGSGKTTTIGKLASQFRAAGKKVVIAAGDTFRAAAV 155 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 +QL++W +R + + GSD A+LA++A QAQA D+L+IDTAGRL N + LM + Sbjct: 156 EQLQVWGERADVPVLTAPEGSDPASLAFDAMTQAQADGADLLMIDTAGRLQNRADLMEEL 215 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 K++RV+++ DP APH+ L VLDATTGQNA++QV++F +A +GL+MTK+DGTA+GG L Sbjct: 216 AKIVRVIRKKDPDAPHNTLLVLDATTGQNAVQQVKVFQELADVSGLVMTKLDGTAKGGVL 275 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 + + +P++ +GVGE I+DL PF DF+A + G Sbjct: 276 VALADKFGLPIHAIGVGEQIDDLAPFDPDDFAAALVGL 313 >gi|163737648|ref|ZP_02145065.1| signal recognition particle-docking protein FtsY [Phaeobacter gallaeciensis BS107] gi|161389174|gb|EDQ13526.1| signal recognition particle-docking protein FtsY [Phaeobacter gallaeciensis BS107] Length = 415 Score = 264 bits (674), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 126/274 (45%), Positives = 191/274 (69%), Gaps = 1/274 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E+LEDLL+ +D+GV A ++ + R K +S + + ++ + +++ P Sbjct: 139 RALDDDMLEQLEDLLVGADMGVDTALRVTANMAEGRLGKRLSTREIKELLAAEVARIMEP 198 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +++P ++ RP V+LVVGVNG GKTT IGKL+ + G KV++AAGDTFR+AA++QL Sbjct: 199 VARPMPI-YAKRPQVVLVVGVNGSGKTTTIGKLASQFKAVGKKVVIAAGDTFRAAAVEQL 257 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W DR + + GSD A+LA++A +AQ + D+L+IDTAGRL N + LM + K+ Sbjct: 258 QVWGDRAGVPVLTAPEGSDPASLAFDAMTRAQEEGADLLMIDTAGRLQNRADLMEELAKI 317 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+++ DP APH+ L VLDATTGQNAL QV+ F +A +GL+MTK+DGTA+GG L+ + Sbjct: 318 VRVIQKKDPSAPHNTLLVLDATTGQNALNQVDTFQKLADVSGLVMTKLDGTAKGGVLVAL 377 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +P++ +GVGE I+DL PF +DF+A +TG Sbjct: 378 ADRFGLPIHAIGVGEQIDDLAPFDPEDFAAALTG 411 >gi|126725602|ref|ZP_01741444.1| signal recognition particle-docking protein FtsY [Rhodobacterales bacterium HTCC2150] gi|126704806|gb|EBA03897.1| signal recognition particle-docking protein FtsY [Rhodobacterales bacterium HTCC2150] Length = 420 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 126/275 (45%), Positives = 192/275 (69%), Gaps = 1/275 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E+LE+LLI SD+GV A ++ + R+ K +S + +++ + ++L P Sbjct: 145 RVLDDDMLEQLEELLITSDMGVETALRVTANMAEGRFGKKLSSSEIKSLLAQEVARILEP 204 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 ++KP ++ +P V+LVVGVNG GKTT IGKL+ + AG V++AAGDTFR+AA++QL Sbjct: 205 VAKPMPL-YTKKPQVVLVVGVNGSGKTTTIGKLASQFKAAGKSVVIAAGDTFRAAAVEQL 263 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W +R + + + GSD A+LA++A +A+ D+L+IDTAGRL N S LM + K+ Sbjct: 264 QVWGERANVPVLTAPEGSDPASLAFDAMTKAENDGADLLLIDTAGRLQNRSDLMEELAKI 323 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+++ DP APH+ L VLDATTGQNAL QV+ F +A +GL+MTK+DGTA+GG L+ + Sbjct: 324 VRVIRKKDPEAPHNTLLVLDATTGQNALNQVDAFQKLADVSGLVMTKLDGTAKGGVLVAL 383 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 +P++ +GVGE I+DL PF ++F+A +TG Sbjct: 384 ADRFGLPIHAIGVGEQIDDLAPFDPEEFAAALTGT 418 >gi|326560132|gb|EGE10522.1| signal recognition particle-docking protein FtsY [Moraxella catarrhalis 46P47B1] gi|326573383|gb|EGE23351.1| signal recognition particle-docking protein FtsY [Moraxella catarrhalis 101P30B1] Length = 313 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 135/302 (44%), Positives = 197/302 (65%), Gaps = 4/302 (1%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 +E W ++ G + +S L EG+ ++ + +++DD + EE+ED L+ +DIGV +I Sbjct: 4 NEKGGWFSRMKAGLSKSSKNLSEGLVNVLVGGKQIDDELLEEVEDQLLVADIGVNATNRI 63 Query: 67 VEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 ++ L + D+ LY +EL +L P P D + +P+VIL+VGVNGVGK Sbjct: 64 IKNLTEQTARGDLIYSHALYKALKTELTD-ILTPKVAPLIIDTTKKPYVILMVGVNGVGK 122 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+K++ + G VMLAAGDTFR+AA +QL+IW +R V GSD+A++ ++ Sbjct: 123 TTTIGKLAKRLQNEGKSVMLAAGDTFRAAATEQLQIWGERNGIPVVAQGHGSDSASVIFD 182 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + A+AK +DVLI DTAGRL N + LM + K++RV+K+ D APH + VLDA TGQN Sbjct: 183 AMQSAKAKGIDVLIADTAGRLQNKTHLMNELEKVVRVMKKGDETAPHETMIVLDAGTGQN 242 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ QV++F TG+ +TK+DGTA+GG + I IP+ F+GVGEGI+DL+PF K Sbjct: 243 AINQVQVFSEAVNLTGISVTKLDGTAKGGVVFNIAQNTDIPIRFIGVGEGIDDLQPFKPK 302 Query: 305 DF 306 DF Sbjct: 303 DF 304 >gi|284008656|emb|CBA75288.1| cell division protein [Arsenophonus nasoniae] Length = 414 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 127/296 (42%), Positives = 199/296 (67%), Gaps = 2/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 ++ +L +G T + G +++DD + +ELE+ L+ +D+G+ +KI++ L Sbjct: 111 NFFSRLRRGLLKTRQNMGIGFVSFFRGKKIDDDLFDELEEQLLIADVGLETTRKIIDSLT 170 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K+++ +LY + E + +L + KP + + P+VIL+VGVNGVGKTT IGK Sbjct: 171 NHANRKELNDAAMLYSKLREEMANILSGVEKPLVIE-NKLPYVILMVGVNGVGKTTTIGK 229 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+++ G VMLAAGDTFR+AA++QL++W +R + V + G+D A++ ++A + A+ Sbjct: 230 LARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQQTGADPASVIFDAIQSAK 289 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 AK +D+LI DTAGRL N + LM + K++RV+++LD HAPH V+ LDA+TGQNA+ Q + Sbjct: 290 AKGIDILIADTAGRLQNKTHLMEELKKIVRVMQKLDQHAPHEVMLTLDASTGQNAINQAK 349 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +FH G TG+I+TK+DGTA+GG + I KIP+ ++G+GEGI+DL PFVA DF Sbjct: 350 IFHEAVGLTGIILTKLDGTAKGGVIFAIADQFKIPIRYIGIGEGIDDLRPFVAHDF 405 >gi|119944395|ref|YP_942075.1| signal recognition particle-docking protein FtsY [Psychromonas ingrahamii 37] gi|119862999|gb|ABM02476.1| signal recognition particle-docking protein FtsY [Psychromonas ingrahamii 37] Length = 453 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 125/306 (40%), Positives = 198/306 (64%), Gaps = 1/306 (0%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 QK ++L + + + T L + G+ + S +++D + EELE+ LI +DIGV Sbjct: 136 EKQKTEEKALGFFARFKQSLTKTRLSIGSGLYSLFSGKKIDADLFEELEEQLILADIGVD 195 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 KI+++L + K + LY + E + +L + +P D + P+VIL+VGVN Sbjct: 196 TTLKIIDKLTAQANRKQLKDAEALYTLLKEDLSGILQEVEQPLVIDETKSPYVILMVGVN 255 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT IGKL+KK G VMLAAGDTFR+AA++QL++W +R + + + GSD+A+ Sbjct: 256 GVGKTTTIGKLAKKYQQQGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQQTGSDSAS 315 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++A A+A+ +DVLI DTAGRL N LM + K++R++++ DP APH ++ +DA+ Sbjct: 316 VLFDAMDAAKARGIDVLIADTAGRLQNKEHLMDELSKVVRIMRKKDPSAPHEIMLTIDAS 375 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNA+ Q ++F+ G TG+ +TK+DGTA+GG + I +K+P+ ++G GEGI+DL Sbjct: 376 TGQNAISQADLFNKAVGITGITLTKLDGTAKGGVIFSIADKYKLPIRYIGTGEGIDDLRE 435 Query: 301 FVAKDF 306 F A++F Sbjct: 436 FNAREF 441 >gi|192973052|gb|ACF06951.1| signal recognition partical docking protein FtsY [uncultured Roseobacter sp.] Length = 395 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 131/288 (45%), Positives = 195/288 (67%), Gaps = 1/288 (0%) Query: 26 LKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85 L K G+ R LDD + E+LE+LLI SD+GV A +I L R+ + +S + Sbjct: 107 LPQKTGVFGRAPRRVLDDDMLEQLEELLISSDMGVDTAVRITANLAEGRFGRKLSTAEIK 166 Query: 86 YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 ++E I +++ P+++P ++ +P VILVVGVNG GKTT IGKL+ + AG V++A Sbjct: 167 SALAEEIARVMEPVARPLPI-YNKKPQVILVVGVNGSGKTTTIGKLASQFKKAGKSVVIA 225 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 AGDTFR+AA+ QL++W +R + + GSD A+LA++A QA+ D+L+IDTAGRL Sbjct: 226 AGDTFRAAAVGQLQVWGERAGVPVMTAAEGSDPASLAFDAMTQAEKDGADLLMIDTAGRL 285 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 N + LM + K+IRV+++ DP APH+ + VLDATTGQNA+ QVE+F +A TGL+MTK Sbjct: 286 QNRADLMEELSKIIRVIRKKDPDAPHNTVLVLDATTGQNAVNQVEVFRKMADVTGLVMTK 345 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 +DGTA+GG L+ + +P++ +GVGE I+DL+ F ++F+A +TG Sbjct: 346 LDGTAKGGVLVSLADKFALPIHAIGVGEQIDDLDAFDPQEFAAALTGV 393 >gi|256823779|ref|YP_003147742.1| signal recognition particle-docking protein FtsY [Kangiella koreensis DSM 16069] gi|256797318|gb|ACV27974.1| signal recognition particle-docking protein FtsY [Kangiella koreensis DSM 16069] Length = 427 Score = 263 bits (672), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 129/301 (42%), Positives = 203/301 (67%), Gaps = 4/301 (1%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 +E + +L G + T +L + + +++ S+ +DD + E++E L+ +D+GV+ +KI Sbjct: 116 AEKQGFFSRLKAGLSRTRGQLADSLANLVLGSKEIDDDLLEDIETQLLMADVGVSATRKI 175 Query: 67 VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 +++L K K++ + L D + +L+ +++ P ++P + +H+P VIL+VGVNGVGKT Sbjct: 176 IDDLTDKAARKELKDPQALMDRLRQLLSEIIEPCTQPL--ELTHKPFVILMVGVNGVGKT 233 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+KK G VMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A Sbjct: 234 TTIGKLAKKFQGEGKSVMLAAGDTFRAAAVEQLQVWGERNNIHVTAQHTGADSASVIFDA 293 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + AQA+K+DVLI DTAGRLH S LM + K+ RV+++LDP APH V+ V+DA TGQNA Sbjct: 294 LQAAQARKIDVLIADTAGRLHTKSNLMDELSKVQRVMQKLDPSAPHEVMLVVDAGTGQNA 353 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L Q E F+ +G+ +TK+DGTA+GG + + K P+ F+GVGEGI+DL F +D Sbjct: 354 LNQAEHFNKAVPLSGITITKLDGTAKGGIIFALADKMKTPIRFIGVGEGIDDLREFNGQD 413 Query: 306 F 306 F Sbjct: 414 F 414 >gi|326565395|gb|EGE15572.1| signal recognition particle-docking protein FtsY [Moraxella catarrhalis 103P14B1] gi|326575720|gb|EGE25643.1| signal recognition particle-docking protein FtsY [Moraxella catarrhalis CO72] Length = 313 Score = 263 bits (671), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 134/302 (44%), Positives = 197/302 (65%), Gaps = 4/302 (1%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 +E W ++ G + +S L EG+ ++ + +++DD + EE+ED L+ +DIGV +I Sbjct: 4 NEKGGWFSRMKAGLSKSSKNLSEGLVNVLVGGKQIDDELLEEVEDQLLVADIGVNATNRI 63 Query: 67 VEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 ++ L + D+ LY +EL +L P P D + +P+VIL+VGVNGVGK Sbjct: 64 IKNLTEQTARGDLIYSHALYKALKTELTD-ILTPKVAPLIIDTTKKPYVILMVGVNGVGK 122 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+K++ + G VMLAAGDTFR+AA +QL+IW +R + GSD+A++ ++ Sbjct: 123 TTTIGKLAKRLQNEGKSVMLAAGDTFRAAATEQLQIWGERNGIPVIAQGHGSDSASVIFD 182 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + A+AK +DVLI DTAGRL N + LM + K++RV+K+ D APH + VLDA TGQN Sbjct: 183 AMQSAKAKGIDVLIADTAGRLQNKTHLMNELEKVVRVMKKGDETAPHETMIVLDAGTGQN 242 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ QV++F TG+ +TK+DGTA+GG + I IP+ F+GVGEGI+DL+PF K Sbjct: 243 AINQVQVFSEAVNLTGISVTKLDGTAKGGVVFNIAQNTDIPIRFIGVGEGIDDLQPFKPK 302 Query: 305 DF 306 DF Sbjct: 303 DF 304 >gi|296113141|ref|YP_003627079.1| signal recognition particle-docking protein FtsY [Moraxella catarrhalis RH4] gi|295920835|gb|ADG61186.1| signal recognition particle-docking protein FtsY [Moraxella catarrhalis RH4] gi|326560515|gb|EGE10897.1| signal recognition particle-docking protein FtsY [Moraxella catarrhalis 7169] gi|326565755|gb|EGE15917.1| signal recognition particle-docking protein FtsY [Moraxella catarrhalis BC1] gi|326570406|gb|EGE20446.1| signal recognition particle-docking protein FtsY [Moraxella catarrhalis BC8] gi|326571092|gb|EGE21116.1| signal recognition particle-docking protein FtsY [Moraxella catarrhalis BC7] gi|326577186|gb|EGE27080.1| signal recognition particle-docking protein FtsY [Moraxella catarrhalis O35E] Length = 313 Score = 263 bits (671), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 134/302 (44%), Positives = 197/302 (65%), Gaps = 4/302 (1%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 +E W ++ G + +S L EG+ ++ + +++DD + EE+ED L+ +DIGV +I Sbjct: 4 NEKGGWFSRMKAGLSKSSKNLSEGLVNVLVGGKQIDDELLEEVEDQLLVADIGVNATNRI 63 Query: 67 VEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 ++ L + D+ LY +EL +L P P D + +P+VIL+VGVNGVGK Sbjct: 64 IKNLTEQTARGDLIYSHALYKALKTELTD-ILTPKVAPLIIDTTKKPYVILMVGVNGVGK 122 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+K++ + G VMLAAGDTFR+AA +QL+IW +R + GSD+A++ ++ Sbjct: 123 TTTIGKLAKRLQNEGKSVMLAAGDTFRAAATEQLQIWGERNGIAVIAQGHGSDSASVIFD 182 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + A+AK +DVLI DTAGRL N + LM + K++RV+K+ D APH + VLDA TGQN Sbjct: 183 AMQSAKAKGIDVLIADTAGRLQNKTHLMNELEKVVRVMKKGDETAPHETMIVLDAGTGQN 242 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ QV++F TG+ +TK+DGTA+GG + I IP+ F+GVGEGI+DL+PF K Sbjct: 243 AINQVQVFSEAVNLTGISVTKLDGTAKGGVVFNIAQNTDIPIRFIGVGEGIDDLQPFKPK 302 Query: 305 DF 306 DF Sbjct: 303 DF 304 >gi|326564152|gb|EGE14388.1| signal recognition particle-docking protein FtsY [Moraxella catarrhalis 12P80B1] Length = 313 Score = 263 bits (671), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 134/302 (44%), Positives = 197/302 (65%), Gaps = 4/302 (1%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 +E W ++ G + +S L EG+ ++ + +++DD + EE+ED L+ +DIGV +I Sbjct: 4 NEKGGWFSRMKAGLSKSSKNLSEGLVNVLVGGKQIDDELLEEVEDQLLVADIGVNATNRI 63 Query: 67 VEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 ++ L + D+ LY +EL +L P P D + +P+VIL+VGVNGVGK Sbjct: 64 IKNLTEQAARGDLIYSHALYKALKTELTD-ILTPKVAPLIIDTTKKPYVILMVGVNGVGK 122 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+K++ + G VMLAAGDTFR+AA +QL+IW +R + GSD+A++ ++ Sbjct: 123 TTTIGKLAKRLQNEGKSVMLAAGDTFRAAATEQLQIWGERNGIAVIAQGHGSDSASVIFD 182 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + A+AK +DVLI DTAGRL N + LM + K++RV+K+ D APH + VLDA TGQN Sbjct: 183 AMQSAKAKGIDVLIADTAGRLQNKTHLMNELEKVVRVMKKGDETAPHETMIVLDAGTGQN 242 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ QV++F TG+ +TK+DGTA+GG + I IP+ F+GVGEGI+DL+PF K Sbjct: 243 AINQVQVFSEAVNLTGISVTKLDGTAKGGVVFNIAQNTDIPIRFIGVGEGIDDLQPFKPK 302 Query: 305 DF 306 DF Sbjct: 303 DF 304 >gi|192360531|ref|YP_001983953.1| signal recognition particle receptor FtsY [Cellvibrio japonicus Ueda107] gi|190686696|gb|ACE84374.1| signal recognition particle receptor FtsY [Cellvibrio japonicus Ueda107] Length = 374 Score = 263 bits (671), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 131/302 (43%), Positives = 201/302 (66%), Gaps = 2/302 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQK 65 A L + ++ +G + TS EG+ + R+ +D+ + EELE L+ +D+G+ + Sbjct: 63 AEPKLGFFARIKRGLSRTSSHFAEGLGKLFLGRKTIDEELFEELETQLLIADVGMEATSE 122 Query: 66 IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 I++ L ++ K ++ L+ + E + ++L P+ +P +++P+VILVVGVNGVGK Sbjct: 123 IIDNLTSRVARKQLADSDALFAALREQLAELLRPVEQPLVIPAANKPYVILVVGVNGVGK 182 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+K++ + G KVMLAAGDTFR+AA++QL++W R + + G+D+A++ ++ Sbjct: 183 TTTIGKLAKRLQNDGRKVMLAAGDTFRAAAVEQLQVWGQRNNVPVIAQHSGADSASVIFD 242 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A AQ++ +DV+I DTAGRLHN + LM + K+ RV+ +LD APH VL VLDA TGQN Sbjct: 243 ALSAAQSRGIDVVIADTAGRLHNKNHLMDELAKVKRVMAKLDVSAPHEVLLVLDAGTGQN 302 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 AL Q E F AG TG+ +TK+DGTA+GG + + +PV F+GVGEGI+DL+PF A+ Sbjct: 303 ALNQAEQFRDAAGVTGIALTKLDGTAKGGVIFALSKKFGLPVRFIGVGEGIDDLQPFAAE 362 Query: 305 DF 306 F Sbjct: 363 PF 364 >gi|254476268|ref|ZP_05089654.1| signal recognition particle-docking protein FtsY [Ruegeria sp. R11] gi|214030511|gb|EEB71346.1| signal recognition particle-docking protein FtsY [Ruegeria sp. R11] Length = 418 Score = 262 bits (670), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 127/274 (46%), Positives = 190/274 (69%), Gaps = 1/274 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E+LEDLL+ +D+GV A ++ + RY K +S + + ++ + +++ P Sbjct: 142 RVLDDEMLEQLEDLLVGADMGVDTALRVTANMAEGRYGKRLSAREIKELLAGEVARIMEP 201 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +++P + RP V+LVVGVNG GKTT IGKL+ + AG KV++AAGDTFR+AA++QL Sbjct: 202 VARPMPI-YEKRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKKVVIAAGDTFRAAAVEQL 260 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W DR + + GSD A+LA++A +AQ D+L+IDTAGRL N + LM + K+ Sbjct: 261 QVWGDRAGVPVLTAPEGSDPASLAFDAMTRAQEDGADLLMIDTAGRLQNRADLMEELAKI 320 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+++ D APH+ L VLDATTGQNAL QVE F +A +GL+MTK+DGTA+GG L+ + Sbjct: 321 VRVIRKKDETAPHNTLLVLDATTGQNALNQVETFQKLADVSGLVMTKLDGTAKGGVLVAL 380 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +P++ +GVGE I+DL PF ++F+A +TG Sbjct: 381 ADKFGLPIHAIGVGEQIDDLAPFDPEEFAAALTG 414 >gi|294638159|ref|ZP_06716415.1| cell division protein FtsY [Edwardsiella tarda ATCC 23685] gi|291088726|gb|EFE21287.1| cell division protein FtsY [Edwardsiella tarda ATCC 23685] Length = 500 Score = 262 bits (669), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 131/300 (43%), Positives = 194/300 (64%), Gaps = 12/300 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + +ELE+ L+ +D+GV +KI++ L T Sbjct: 198 FFARLKRSLVKTRQNLGSGFFGLFRGKKIDDDLFDELEEQLLVADVGVDTTRKIIDTLTT 257 Query: 73 KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTT 126 K++ LY ++ E++HK+ PL D S H+P VIL+VGVNGVGKTT Sbjct: 258 HASRKELKDAEALYGKLKQEMGEILHKVDAPL------DISGHQPFVILMVGVNGVGKTT 311 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+++ G VMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A Sbjct: 312 TIGKLARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAI 371 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+A+KVDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Sbjct: 372 QAAKARKVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEQAPHEVMLTIDASTGQNAI 431 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q +FH G TG+ +TK+DGTA+GG + + IP+ ++GVGEGI DL PF A DF Sbjct: 432 SQARLFHEAVGLTGITLTKLDGTAKGGVIFAVADQFGIPIRYIGVGEGIEDLRPFKADDF 491 >gi|84683623|ref|ZP_01011526.1| signal recognition particle-docking protein FtsY [Maritimibacter alkaliphilus HTCC2654] gi|84668366|gb|EAQ14833.1| signal recognition particle-docking protein FtsY [Rhodobacterales bacterium HTCC2654] Length = 453 Score = 261 bits (668), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 128/275 (46%), Positives = 190/275 (69%), Gaps = 1/275 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E LE+L+I SD+GV A ++ + R + VSV+ + +++ I +++ P Sbjct: 180 RVLDDDMLESLEELMIASDMGVDTALRVSANIAEGRLGRKVSVEEIKEILAKEIARVMEP 239 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 ++KP + +RP V+LVVGVNG GKTT IGKL+ + AG V++AAGDTFR+AA++QL Sbjct: 240 VAKPLPL-YPNRPQVVLVVGVNGAGKTTTIGKLASQFRAAGKSVVIAAGDTFRAAAVEQL 298 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W +R + + GSD A+LA++A +A+A D+L+IDTAGRL N LMA + K+ Sbjct: 299 QVWGERAGVPVLTAPEGSDPASLAFDALTKARADGADLLMIDTAGRLQNREDLMAELAKI 358 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+K++D APH+ L VLDATTGQNAL QV+ F +A +GL+MTK+DGTA+GG L+ + Sbjct: 359 VRVIKKIDDSAPHNTLLVLDATTGQNALSQVQTFQKLADVSGLVMTKLDGTAKGGVLVAL 418 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 +P++ +GVGE I+DL PF DF+ +TG Sbjct: 419 ADKFGLPIHAIGVGEQIDDLAPFDPDDFAKALTGL 453 >gi|86136625|ref|ZP_01055204.1| signal recognition particle-docking protein FtsY [Roseobacter sp. MED193] gi|85827499|gb|EAQ47695.1| signal recognition particle-docking protein FtsY [Roseobacter sp. MED193] Length = 355 Score = 261 bits (668), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 128/275 (46%), Positives = 190/275 (69%), Gaps = 1/275 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E+LE+LLI +D+GV A ++ + R K +S + + ++ + +++ Sbjct: 79 RTLDDDMLEQLEELLIAADMGVDTALRVTANMAEGRLGKKLSAREIKELLAAEVARVMEH 138 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 ++KP ++HRP V+LVVGVNG GKTT IGKL+ + AG V++AAGDTFR+AA++QL Sbjct: 139 VAKPMPL-YAHRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKNVVIAAGDTFRAAAVEQL 197 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W DR + + GSD A+LAY+A +AQ + D+L+IDTAGRL N + LM + K+ Sbjct: 198 QVWGDRAGVPVLTAPEGSDPASLAYDAMTRAQEEGADLLMIDTAGRLQNRADLMEELSKI 257 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 IRV+++ D APH+ L VLDATTGQNAL QVE F +A +GL+MTK+DGTA+GG L+ + Sbjct: 258 IRVIRKKDETAPHNTLLVLDATTGQNALSQVETFQKLADVSGLVMTKLDGTAKGGVLVAL 317 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 +P++ +GVGE I+DL PF ++F+A +TG Sbjct: 318 ADKFALPIHAIGVGEQIDDLAPFDPEEFAAALTGL 352 >gi|56696224|ref|YP_166581.1| signal recognition particle-docking protein FtsY [Ruegeria pomeroyi DSS-3] gi|56677961|gb|AAV94627.1| signal recognition particle-docking protein FtsY [Ruegeria pomeroyi DSS-3] Length = 390 Score = 261 bits (668), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 127/274 (46%), Positives = 190/274 (69%), Gaps = 1/274 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E+LE+LLI +D+GV A ++ + R + +S Q + +++ I +++ P Sbjct: 114 RTLDDDMLEQLEELLIAADMGVDTALRVTANMAEGRIGRKLSTQEIKALLAQEITRIMEP 173 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +++P + RP V+LVVGVNG GKTT IGKL+ + AG KV++AAGDTFR+AA++QL Sbjct: 174 VARPMPL-YPKRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKKVVIAAGDTFRAAAVEQL 232 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W DR + + GSD A+LA++A +AQ D+L+IDTAGRL N + LM + K+ Sbjct: 233 QVWGDRAGVPVLTAPEGSDPASLAFDAMTRAQEDGADLLLIDTAGRLQNRADLMEELAKI 292 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+++ D APH+ L VLDATTGQNA+ QVE F +A +GL+MTK+DGTA+GG L+ + Sbjct: 293 VRVIRKKDDTAPHNTLLVLDATTGQNAISQVETFQKLADVSGLVMTKLDGTAKGGILVSL 352 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +P++ +GVGE I+DL PF +DF+A +TG Sbjct: 353 ADRFGLPIHAIGVGEQIDDLAPFDPEDFAAALTG 386 >gi|77462389|ref|YP_351893.1| Signal recognition particle-docking protein FtsY [Rhodobacter sphaeroides 2.4.1] gi|77386807|gb|ABA77992.1| signal recognition particle-docking protein FtsY [Rhodobacter sphaeroides 2.4.1] Length = 393 Score = 261 bits (668), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 127/277 (45%), Positives = 191/277 (68%), Gaps = 1/277 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E LE++LI++D+GV A ++ + RY + VS + + ++ I ++L P Sbjct: 118 RILDDAMLESLEEVLIQADMGVETALRVTANIAEGRYGRRVSAREIKEALAAEIARILEP 177 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +++P + RP V+LVVGVNG GKTT IGKL+ + AG V++AAGDTFR+AA++QL Sbjct: 178 VARPMPL-YPSRPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGDTFRAAAVEQL 236 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W R + + GSD A+LA++A +AQA+ D+L+IDTAGRL N + LM + K+ Sbjct: 237 QVWGRRAGVPVLTAPEGSDPASLAFDAMTKAQAEGADLLMIDTAGRLQNRADLMEELSKI 296 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+++ DP APH+ L VLDATTGQNAL QVE+F +A +GL+MTK+DGTA+GG L+ + Sbjct: 297 VRVIRKKDPDAPHNTLLVLDATTGQNALNQVEIFRKLADVSGLVMTKLDGTAKGGVLVAL 356 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P++ +GVGE I+DL PF ++F+ + G D Sbjct: 357 ADRFGLPIHAIGVGEQIDDLAPFDPEEFARALMGLDD 393 >gi|326388652|ref|ZP_08210245.1| signal recognition particle-docking protein FtsY [Novosphingobium nitrogenifigens DSM 19370] gi|326206903|gb|EGD57727.1| signal recognition particle-docking protein FtsY [Novosphingobium nitrogenifigens DSM 19370] Length = 308 Score = 261 bits (667), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 138/305 (45%), Positives = 189/305 (61%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 S +W +L G T +L + ++ + RL D +++ED LI SD+G A +I E Sbjct: 3 SDTWSDRLLGGLRKTQERLSGNLAGLVGANRLSDEQLDDIEDALIASDLGPRAAARIRER 62 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L + R+ K + + V+E I +L P+++P + RP VILV+GVNG GKTT I Sbjct: 63 LASGRFEKGLDEATLREAVAEEIAAILRPVARPLDIVAFPRPQVILVIGVNGSGKTTTIA 122 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + VMLAAGDTFR+AAI QL++WA+R V G D A++ ++A KQA Sbjct: 123 KLAHLFQELDYSVMLAAGDTFRAAAIGQLRVWAERLGVPIVSGAEGGDPASIVFDAVKQA 182 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 DVLI+DTAGRL N LM + K+ RVL RL+P APH V+ VLDAT GQNAL+Q+ Sbjct: 183 TDAGTDVLIVDTAGRLQNKRELMDELAKIRRVLGRLNPEAPHDVVLVLDATNGQNALQQI 242 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E+F VAG TGL+MTK+DGTARGG L+ + +P++ +GVGE I+DL PF + V Sbjct: 243 EIFREVAGVTGLVMTKLDGTARGGVLVAAAEQYGLPIHAIGVGEKIDDLRPFDPDLVAKV 302 Query: 310 ITGCL 314 I G Sbjct: 303 IAGVF 307 >gi|163796739|ref|ZP_02190697.1| Signal recognition particle GTPase [alpha proteobacterium BAL199] gi|159177993|gb|EDP62540.1| Signal recognition particle GTPase [alpha proteobacterium BAL199] Length = 316 Score = 261 bits (667), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 143/313 (45%), Positives = 208/313 (66%), Gaps = 1/313 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 MS + + E W +L G A +S +L +GIT + RRLD EELEDLLI +D+GV Sbjct: 1 MSAEPASPERKGWFARLRDGLAKSSRRLADGITSLFVKRRLDAATLEELEDLLITADLGV 60 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGV 119 A K+ L +++ K+V+ V + I +L P++ P + +++P V+L+VGV Sbjct: 61 ETAAKLTANLAREKFDKEVTGDEVRAAFAADIAAILAPVAVPLEPREIANKPFVVLMVGV 120 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NG GKTT IGKL+++ +DAG V+LAAGDTFR+AA++QL++W +R+ + G+DAA Sbjct: 121 NGSGKTTTIGKLARQWTDAGKSVVLAAGDTFRAAAVEQLRVWGERSGCPVIEKPHGADAA 180 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ALA++A +A+ +K DVLIIDTAGRL N + LM + K+IRVLK+ DP APH+ + VLD Sbjct: 181 ALAFDALVEARERKADVLIIDTAGRLQNKAGLMEELAKVIRVLKKQDPEAPHATVLVLDG 240 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 T GQNA QV+ F + TGLI+TK+DG+ARGG ++ + + +PV+ +GVGEGI+DL Sbjct: 241 TVGQNAHAQVKTFREMVNVTGLIVTKLDGSARGGIVVALAQSQGLPVHAVGVGEGIDDLH 300 Query: 300 PFVAKDFSAVITG 312 PF F+ + G Sbjct: 301 PFEPDAFARSLMG 313 >gi|259416345|ref|ZP_05740265.1| cell division protein FtsY [Silicibacter sp. TrichCH4B] gi|259347784|gb|EEW59561.1| cell division protein FtsY [Silicibacter sp. TrichCH4B] Length = 388 Score = 261 bits (667), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 127/277 (45%), Positives = 191/277 (68%), Gaps = 1/277 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E LE++LI SD+GV A ++ + R + VS + + +++ I +++ P Sbjct: 111 RVLDDDMLESLEEMLIASDMGVDTALRVTANIAEGRMGRRVSGREIRELLAQEIARVMEP 170 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +++P + +P V+LVVGVNG GKTT IGKL+ + AG V++AAGDTFR+AA++QL Sbjct: 171 VARPMPL-YPSKPQVVLVVGVNGSGKTTTIGKLASQFRAAGKTVVIAAGDTFRAAAVEQL 229 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W DR + + GSD A+LA++A +A+A D+L+IDTAGRL N + LM + K+ Sbjct: 230 QVWGDRAGVPVLTAPEGSDPASLAFDAMTKAEADGADLLMIDTAGRLQNRADLMEELAKI 289 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+++ DP APH+ L VLDATTGQNAL QVE F +A +GL+MTK+DGTA+GG L+ + Sbjct: 290 VRVIRKKDPEAPHNTLLVLDATTGQNALSQVETFRQLADVSGLVMTKLDGTAKGGVLVAL 349 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P++ +GVGE I+DL PF ++F+A +TG D Sbjct: 350 ADKFGLPIHAIGVGEQIDDLAPFDPEEFAAALTGLED 386 >gi|332560273|ref|ZP_08414595.1| signal recognition particle-docking protein FtsY [Rhodobacter sphaeroides WS8N] gi|332277985|gb|EGJ23300.1| signal recognition particle-docking protein FtsY [Rhodobacter sphaeroides WS8N] Length = 376 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 127/277 (45%), Positives = 191/277 (68%), Gaps = 1/277 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E LE++LI++D+GV A ++ + RY + VS + + ++ I ++L P Sbjct: 101 RILDDAMLESLEEVLIQADMGVETALRVTANIAEGRYGRRVSAREIKEALAAEIARILEP 160 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +++P + RP V+LVVGVNG GKTT IGKL+ + AG V++AAGDTFR+AA++QL Sbjct: 161 VARPMPL-YPSRPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGDTFRAAAVEQL 219 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W R + + GSD A+LA++A +AQA+ D+L+IDTAGRL N + LM + K+ Sbjct: 220 QVWGRRAGVPVLTAPEGSDPASLAFDAMTKAQAEGADLLMIDTAGRLQNRADLMEELSKI 279 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+++ DP APH+ L VLDATTGQNAL QVE+F +A +GL+MTK+DGTA+GG L+ + Sbjct: 280 VRVIRKKDPDAPHNTLLVLDATTGQNALNQVEIFRKLADVSGLVMTKLDGTAKGGVLVAL 339 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P++ +GVGE I+DL PF ++F+ + G D Sbjct: 340 ADRFGLPIHAIGVGEQIDDLAPFDPEEFARALMGLDD 376 >gi|221638249|ref|YP_002524511.1| Signal recognition particle-docking protein FtsY [Rhodobacter sphaeroides KD131] gi|221159030|gb|ACM00010.1| Signal recognition particle-docking protein FtsY [Rhodobacter sphaeroides KD131] Length = 381 Score = 261 bits (666), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 127/277 (45%), Positives = 191/277 (68%), Gaps = 1/277 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E LE++LI++D+GV A ++ + RY + VS + + ++ I ++L P Sbjct: 106 RILDDAMLESLEEVLIQADMGVETALRVTANIAEGRYGRRVSAREIKEALAAEIARILEP 165 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +++P + RP V+LVVGVNG GKTT IGKL+ + AG V++AAGDTFR+AA++QL Sbjct: 166 VARPMPL-YPSRPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGDTFRAAAVEQL 224 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W R + + GSD A+LA++A +AQA+ D+L+IDTAGRL N + LM + K+ Sbjct: 225 QVWGRRAGVPVLTAPEGSDPASLAFDAMTKAQAEGADLLMIDTAGRLQNRADLMEELSKI 284 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+++ DP APH+ L VLDATTGQNAL QVE+F +A +GL+MTK+DGTA+GG L+ + Sbjct: 285 VRVIRKKDPDAPHNTLLVLDATTGQNALNQVEIFRKLADVSGLVMTKLDGTAKGGVLVAL 344 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P++ +GVGE I+DL PF ++F+ + G D Sbjct: 345 ADRFGLPIHAIGVGEQIDDLAPFDPEEFARALMGLDD 381 >gi|254463678|ref|ZP_05077089.1| signal recognition particle-docking protein FtsY [Rhodobacterales bacterium Y4I] gi|206684586|gb|EDZ45068.1| signal recognition particle-docking protein FtsY [Rhodobacterales bacterium Y4I] Length = 396 Score = 261 bits (666), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 128/275 (46%), Positives = 190/275 (69%), Gaps = 1/275 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E+LE+LLI +D+GV A ++ L R K VS + + +++ + +++ P Sbjct: 120 RALDDDMLEQLEELLIAADMGVDTALRVTANLAEGRMGKKVSSREIKELLAQEVARIMEP 179 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 ++KP ++ RP V+LVVGVNG GKTT IGKL+ + AG KV++AAGDTFR+AA++QL Sbjct: 180 VAKPLPI-YAKRPQVVLVVGVNGSGKTTTIGKLASQFKGAGKKVVIAAGDTFRAAAVEQL 238 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W DR + + GSD A+LA++A +AQ D+L+IDTAGRL N + LM + K+ Sbjct: 239 QVWGDRAGVPVLTAPEGSDPASLAFDAMTKAQEDGADLLMIDTAGRLQNRADLMEELAKI 298 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+++ D APH+ L VLDATTGQNAL QV F +A +GL+MTK+DGTA+GG L+ + Sbjct: 299 VRVIRKKDETAPHNTLLVLDATTGQNALSQVGTFQQLADVSGLVMTKLDGTAKGGVLVAL 358 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 +P++ +GVGE I+DL PF ++F+A +TG Sbjct: 359 ADKFGLPIHAIGVGEQIDDLAPFDPEEFAAALTGL 393 >gi|71065494|ref|YP_264221.1| signal recognition particle-docking protein FtsY [Psychrobacter arcticus 273-4] gi|71038479|gb|AAZ18787.1| signal recognition particle-docking protein FtsY [Psychrobacter arcticus 273-4] Length = 478 Score = 261 bits (666), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 137/302 (45%), Positives = 195/302 (64%), Gaps = 4/302 (1%) Query: 12 SWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 SW ++ G + + L EG+ I I + +DD + EE+ED L+ +DIGV +I++ L Sbjct: 171 SWFNRMKTGLSKSRKNLAEGMVGILIGGKEIDDELLEEVEDQLLVADIGVNATNRIIKSL 230 Query: 71 LTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + D+ LY +EL+ +L P P D S +P VILVVGVNGVGKTT I Sbjct: 231 TEQTDRGDLIYAHSLYKALQTELVD-ILTPKVAPLIIDTSKQPFVILVVGVNGVGKTTTI 289 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+K++ G VMLAAGDTFR+AA +QL+IW +R + V GSD+A++ ++A + Sbjct: 290 GKLAKRLQGEGKSVMLAAGDTFRAAATEQLQIWGERNNIPVVAQGHGSDSASVIFDAMQS 349 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+AK +DVLI DTAGRL N + LMA + K++RV+++ D APH + VLDA TGQNA+ Q Sbjct: 350 AKAKNIDVLIADTAGRLQNKTHLMAELEKVVRVMRKADSSAPHEGMIVLDAGTGQNAINQ 409 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 VE+F+ V TG+ +TK+DGTA+GG + I T +P+ ++GVGE I+DL F K F A Sbjct: 410 VELFNKVVPLTGITITKLDGTAKGGVVFNIAETTDVPIRYIGVGESIDDLRAFSPKQFVA 469 Query: 309 VI 310 + Sbjct: 470 AL 471 >gi|146276684|ref|YP_001166843.1| signal recognition particle-docking protein FtsY [Rhodobacter sphaeroides ATCC 17025] gi|145554925|gb|ABP69538.1| signal recognition particle-docking protein FtsY [Rhodobacter sphaeroides ATCC 17025] Length = 410 Score = 261 bits (666), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 127/277 (45%), Positives = 191/277 (68%), Gaps = 1/277 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E LE++LI++D+GV A ++ + RY + VS + + ++ I ++L P Sbjct: 135 RILDDAMLESLEEVLIQADMGVETALRVTANIAEGRYGRRVSSREIKEALATEIARILEP 194 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +++P + RP V+LVVGVNG GKTT IGKL+ + AG V++AAGDTFR+AA++QL Sbjct: 195 VARPMPL-YPSRPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGDTFRAAAVEQL 253 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W R + + GSD A+LA++A +AQA+ D+L+IDTAGRL N + LM + K+ Sbjct: 254 QVWGRRAGVPVLTAPEGSDPASLAFDAMTKAQAEGADLLMIDTAGRLQNRTDLMEELSKI 313 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+++ DP APH+ L VLDATTGQNAL QVE+F +A +GL+MTK+DGTA+GG L+ + Sbjct: 314 VRVIRKKDPDAPHNTLLVLDATTGQNALSQVEIFRKLADVSGLVMTKLDGTAKGGVLVAL 373 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P++ +GVGE I+DL PF ++F+ + G D Sbjct: 374 ADRFGLPIHAIGVGEQIDDLAPFDPEEFARALMGLDD 410 >gi|37527951|ref|NP_931296.1| cell division protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787387|emb|CAE16476.1| cell division protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 424 Score = 261 bits (666), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 129/295 (43%), Positives = 193/295 (65%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + +ELE+ L+ +D+GV +KI+ L Sbjct: 122 FFSRLKRSLVKTRQNLGSGFLSLFSGKKIDDDLFDELEEQLLIADVGVDTTRKIISSLTE 181 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K++ LY + E + +L ++KP + + P+VIL+VGVNGVGKTT IGKL Sbjct: 182 HASRKELKDAEALYAKLKEEMSGILTKVNKPLDIE-GKTPYVILMVGVNGVGKTTTIGKL 240 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D A++ ++A + A+A Sbjct: 241 ARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQHTGADPASVIFDAIQSAKA 300 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K VDVLI DTAGRL N S LM + K++RV+K+LD +APH ++ +LDA+TGQNA+ Q ++ Sbjct: 301 KSVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDENAPHEIMLILDASTGQNAISQAKL 360 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL PF A DF Sbjct: 361 FHEAVGLTGISLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADDF 415 >gi|119473191|ref|ZP_01614888.1| Cell division transporter substrate-binding protein FtsY [Alteromonadales bacterium TW-7] gi|119444555|gb|EAW25870.1| Cell division transporter substrate-binding protein FtsY [Alteromonadales bacterium TW-7] Length = 750 Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 126/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + + G + I S +++DD + EELE L+ +D+GV K+++ L Sbjct: 444 FFSRLKKGLLKTRVNIGAGFSSIFSGKKIDDDLFEELETQLLTADLGVDTTMKLIDRLTD 503 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY++ + + ML +P +P VIL+VGVNGVGKTT IGKL Sbjct: 504 GANRKQLKDGDALYELMKQEMAAMLKTAEQPLTIPAEKKPFVILMVGVNGVGKTTTIGKL 563 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +K+ + G VMLAAGDTFR+AA++QL++W +R S + G+D+A++ ++AF+ A+A Sbjct: 564 AKQFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNSIPVIAQHTGADSASVVFDAFQAAKA 623 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N LM + K+ RV+K++DP APH V+ +DA TGQNA+ QV + Sbjct: 624 RNVDVLIADTAGRLQNKDNLMQELEKIARVMKKIDPDAPHEVMLTIDAGTGQNAISQVNL 683 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ ++K+DGTA+GG + + IP+ ++GVGEGI+DL F + DF Sbjct: 684 FNQCVGLTGITLSKLDGTAKGGVIFAVADKFNIPIRYIGVGEGIDDLRSFKSDDF 738 >gi|99081783|ref|YP_613937.1| signal recognition particle-docking protein FtsY [Ruegeria sp. TM1040] gi|99038063|gb|ABF64675.1| signal recognition particle-docking protein FtsY [Ruegeria sp. TM1040] Length = 386 Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 129/284 (45%), Positives = 193/284 (67%), Gaps = 2/284 (0%) Query: 31 GITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 G T RR LDD + E LE++LI SD+GV A ++ + R + VS + + ++ Sbjct: 100 GRTKPSEPRRVLDDDMLESLEEMLIASDMGVDTALRVTANIAEGRMGRRVSGREIRELLA 159 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 I +++ P+++P + +P V+LVVGVNG GKTT IGKL+ + AG V++AAGDT Sbjct: 160 AEIARVMEPVARPMPL-YPSKPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGDT 218 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+AA++QL++W DR + + GSD A+LA++A +A+A D+L+IDTAGRL N + Sbjct: 219 FRAAAVEQLQVWGDRAGVPVLTAPEGSDPASLAFDAMTKAEADGADLLMIDTAGRLQNRA 278 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 LM + K++RV+++ DP+APH+ L VLDATTGQNAL QVE F +A +GL+MTK+DGT Sbjct: 279 DLMEELAKIVRVIRKKDPNAPHNTLLVLDATTGQNALSQVETFRQLADVSGLVMTKLDGT 338 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 A+GG L+ + +P++ +GVGE I+DL PF ++F+A +TG Sbjct: 339 AKGGVLVALADKFGLPIHAIGVGEQIDDLSPFDPEEFAAALTGL 382 >gi|159045265|ref|YP_001534059.1| hypothetical protein Dshi_2725 [Dinoroseobacter shibae DFL 12] gi|157913025|gb|ABV94458.1| hypothetical protein Dshi_2725 [Dinoroseobacter shibae DFL 12] Length = 499 Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 127/274 (46%), Positives = 189/274 (68%), Gaps = 1/274 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R +DD + E LE++LI +D+GV A ++ + R + VS + +++ I +++ P Sbjct: 224 RVMDDAMLESLEEVLIAADMGVDTALRVSANIAEGRMGRKVSTNEIKRILADEIARIMEP 283 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 ++KP + RP V+LVVGVNG GKTT IGKL+ + AG V++AAGDTFR+AA++QL Sbjct: 284 VAKPLPI-YPKRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKSVVIAAGDTFRAAAVEQL 342 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W DR + + GSD A+LA++A KQAQA D+L+IDTAGRL N + LM + K+ Sbjct: 343 QVWGDRAGVPVLTAPEGSDPASLAFDAIKQAQASGADLLMIDTAGRLQNRADLMEELAKI 402 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV++++D APH+ L VLDATTGQNAL QVE F +A +GL+MTK+DGTA+GG L+ + Sbjct: 403 VRVIRKVDETAPHNTLLVLDATTGQNALSQVETFRKLADVSGLVMTKLDGTAKGGVLVAL 462 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +P++ +GVGE I+DL PF ++F+ +TG Sbjct: 463 ADKFGLPIHAIGVGEQIDDLAPFDPEEFADALTG 496 >gi|197336427|ref|YP_002157238.1| cell division protein FtsY [Vibrio fischeri MJ11] gi|197317917|gb|ACH67364.1| cell division protein FtsY [Vibrio fischeri MJ11] Length = 412 Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 132/296 (44%), Positives = 198/296 (66%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + T + G + S +++DD + EELE+ L+ +D+G+ +I++ L Sbjct: 108 SFFARLKRSLQRTKENIGAGFFGLFSGKKIDDELFEELEEQLLIADVGMDTTVRIIDSLT 167 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K +D+ LY + E + ++L + +P D + PHVIL+VGVNGVGKTT IGK Sbjct: 168 EKASKQDLKDGEALYGLLKEEMAEILAKVEQPLEIDEKNMPHVILMVGVNGVGKTTTIGK 227 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ + G VMLAAGDTFR+AA++QL++W R + G+D+A++ Y+A + A+ Sbjct: 228 LAKQFQNEGKSVMLAAGDTFRAAAVEQLQVWGQRNDVPVIAQHTGADSASVIYDAIEAAR 287 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+KVDV+I DTAGRL N S LM + K++RV+K++DP APH ++ LDA TGQNA+ Q + Sbjct: 288 ARKVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDPSAPHEIMLTLDAGTGQNAISQAK 347 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + I +IP+ F+GVGEGI+DL PFVA+DF Sbjct: 348 LFSDVAPVTGITLTKLDGTAKGGVIFSIADQFQIPIRFIGVGEGIDDLRPFVAQDF 403 >gi|149914432|ref|ZP_01902963.1| signal recognition particle-docking protein FtsY [Roseobacter sp. AzwK-3b] gi|149811951|gb|EDM71784.1| signal recognition particle-docking protein FtsY [Roseobacter sp. AzwK-3b] Length = 439 Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 133/294 (45%), Positives = 196/294 (66%), Gaps = 3/294 (1%) Query: 20 GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79 G L KEG T + R LDD + E+LE+LLI +D+GV A ++ + R + + Sbjct: 146 GLLGRLLGRKEGKT--VVRRVLDDDMLEQLEELLISADMGVDTALRVTANMAEGRMGRKL 203 Query: 80 SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139 S Q + +++ I +++ P+++P + P V+LVVGVNG GKTT IGKL+ + AG Sbjct: 204 SGQEIKELLAQEITRIMEPVARPMPI-YPKTPQVVLVVGVNGSGKTTTIGKLASQFKAAG 262 Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199 V++AAGDTFR+AA++QL+IW R + + GSD A+LA++A ++AQA D+L+I Sbjct: 263 KSVVIAAGDTFRAAAVEQLQIWGGRAGVPVLTAPEGSDPASLAFDAIEKAQADGADLLMI 322 Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 DTAGRL N + LM + K++RV+++ DP APH+ L VLDATTGQNAL QVE F +A + Sbjct: 323 DTAGRLQNRADLMEELAKIVRVIRKKDPGAPHNTLLVLDATTGQNALSQVETFQKLADVS 382 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 GL+MTK+DGTA+GG L+ + +P++ +GVGE I+DL PF +DF+A + G Sbjct: 383 GLVMTKLDGTAKGGVLVALADKFGLPIHAIGVGEQIDDLAPFDPEDFAAALIGL 436 >gi|114771713|ref|ZP_01449117.1| signal recognition particle-docking protein FtsY [alpha proteobacterium HTCC2255] gi|114547785|gb|EAU50675.1| signal recognition particle-docking protein FtsY [alpha proteobacterium HTCC2255] Length = 502 Score = 259 bits (663), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 126/273 (46%), Positives = 185/273 (67%), Gaps = 1/273 (0%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100 DD + E LE+LLI +D+GV + ++ + K VSV V + + ++L P++ Sbjct: 229 FDDNMLESLEELLISADMGVDTSLRVSANMADGNLGKKVSVNEVKILLGNEVARILEPVA 288 Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 KP +S +P V+LVVGVNG GKTT IGKL+ + AG V++AAGDTFR+AA++QL++ Sbjct: 289 KPMPL-YSQKPQVVLVVGVNGSGKTTTIGKLASQFRSAGKSVVIAAGDTFRAAAVEQLQV 347 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 W +R + + GSD A+LA++A + + VD+L+IDTAGRL N LM + K++R Sbjct: 348 WGERAGVPVLTAPEGSDPASLAFDAMNKCKNDNVDLLMIDTAGRLQNRKDLMEELDKIVR 407 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 V+++ DP APH+ L VLDATTGQNA+RQVE+F V+ TGL+MTK+DGTA+GG L+ + Sbjct: 408 VIQKNDPSAPHNTLLVLDATTGQNAIRQVEVFQEVSKVTGLVMTKLDGTAKGGVLVALAD 467 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 +P++ +GVGE I+DL+ F KDF+ +TG Sbjct: 468 KFGLPIHAIGVGEQIDDLQAFDPKDFAKALTGS 500 >gi|126461266|ref|YP_001042380.1| signal recognition particle-docking protein FtsY [Rhodobacter sphaeroides ATCC 17029] gi|126102930|gb|ABN75608.1| signal recognition particle-docking protein FtsY [Rhodobacter sphaeroides ATCC 17029] Length = 379 Score = 259 bits (663), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 127/277 (45%), Positives = 190/277 (68%), Gaps = 1/277 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E LE++LI++D+GV A ++ + RY + VS + + ++ I ++L P Sbjct: 104 RILDDAMLESLEEVLIQADMGVETALRVTANIAEGRYGRRVSAREIKEALAAEIARILEP 163 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +++P + RP V+LVVGVNG GKTT IGKL+ + AG V++AAGDTFR+AA++QL Sbjct: 164 VARPMPL-YPSRPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGDTFRAAAVEQL 222 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W R + + GSD A+LA++A +AQA+ D+L+IDTAGRL N + LM + K+ Sbjct: 223 QVWGRRAGVPVLTAPEGSDPASLAFDAMTKAQAEGADLLMIDTAGRLQNRADLMEELSKI 282 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+ + DP APH+ L VLDATTGQNAL QVE+F +A +GL+MTK+DGTA+GG L+ + Sbjct: 283 VRVIHKKDPDAPHNTLLVLDATTGQNALNQVEIFRKLADVSGLVMTKLDGTAKGGVLVAL 342 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P++ +GVGE I+DL PF ++F+ + G D Sbjct: 343 ADRFGLPIHAIGVGEQIDDLAPFDPEEFARALMGLDD 379 >gi|296284752|ref|ZP_06862750.1| signal recognition particle-docking protein FtsY [Citromicrobium bathyomarinum JL354] Length = 313 Score = 259 bits (662), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 137/301 (45%), Positives = 190/301 (63%), Gaps = 3/301 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSR---RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 +L GF TS +L E I + +R RLDD +E+ED LI SD+G A ++ E L Sbjct: 12 RLLGGFRKTSDRLSENIAPVSQTRGNTRLDDATLDEIEDALIMSDLGPEAAGRVREALRE 71 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 +R+ +++ +++ V++ I +L P++KP RP VILV+GVNG GKTT I KL+ Sbjct: 72 QRFGAEITERQLREAVADEIAAILRPVAKPLEVTAFPRPQVILVIGVNGSGKTTTIAKLA 131 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 + +VMLAAGDTFR+AAI QL+ WADR V G D A++ ++A K+ + Sbjct: 132 HLFMEDDYEVMLAAGDTFRAAAIGQLQTWADRVGVPLVRGPEGGDPASIVFDAVKRGTDE 191 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 D LI+DTAGRL N LM + K+ +VL RL+P APH V+ VLDAT GQNAL Q+++F Sbjct: 192 GTDALIVDTAGRLQNKRELMDELAKIRKVLGRLNPEAPHDVVLVLDATNGQNALSQIDVF 251 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 VAG TGLIMTK+DGTARGG L+ + +P++ +GVGE ++DL PF + VI G Sbjct: 252 QEVAGVTGLIMTKLDGTARGGILVAAAQKYGLPIHAIGVGEQLDDLRPFDPDLVARVIAG 311 Query: 313 C 313 Sbjct: 312 V 312 >gi|329891229|ref|ZP_08269572.1| signal recognition particle-docking protein FtsY [Brevundimonas diminuta ATCC 11568] gi|328846530|gb|EGF96094.1| signal recognition particle-docking protein FtsY [Brevundimonas diminuta ATCC 11568] Length = 311 Score = 259 bits (662), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 131/303 (43%), Positives = 193/303 (63%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W ++L++G + +S ++ + + L + E LE+ LI SD+G A + +IVE Sbjct: 9 WFQRLSEGLSRSSKQMTDQVVSTFVKEPLSEEALERLEEHLIESDLGPAASARIVERFRE 68 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 R+ K + + ++E + L P F+ +P+V+L VGVNG GKTT +GK++ Sbjct: 69 LRFGKTSDEREIKQALAEAVAAELTPRQATFDPLSGPKPYVVLFVGVNGSGKTTTLGKIA 128 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 ++ G KVM+ AGDTFR+AA +QLK+WADR A F G+DAA LA++AF +A+ + Sbjct: 129 SDLTAKGAKVMIVAGDTFRAAAREQLKVWADRAGAHFESRRDGADAAGLAFDAFAKAKEE 188 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 DV++IDTAGRL N S LM + K++RVLK++DP APH L VLDAT G+NAL Q ++F Sbjct: 189 GFDVVLIDTAGRLQNKSTLMDELLKIVRVLKKVDPDAPHETLLVLDATVGRNALEQEKIF 248 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 A +G++MTK+DGTARGG L+P+ P+ +GVGEG+ DL+PF A+ FS + G Sbjct: 249 GRTAYVSGVVMTKLDGTARGGVLVPVAQASDAPIKLIGVGEGVEDLQPFDARAFSRSLVG 308 Query: 313 CLD 315 D Sbjct: 309 LED 311 >gi|294677911|ref|YP_003578526.1| cell division protein FtsY [Rhodobacter capsulatus SB 1003] gi|294476731|gb|ADE86119.1| cell division protein FtsY [Rhodobacter capsulatus SB 1003] Length = 479 Score = 259 bits (662), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 125/278 (44%), Positives = 191/278 (68%), Gaps = 1/278 (0%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95 + R LDD + E +EDLLI +D+GV A ++ L R + +SV + ++ + ++ Sbjct: 200 VPRRVLDDAMLESIEDLLIAADMGVDTALRVTANLAEGRMGRKLSVPELKDILAAEVARI 259 Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 + P+++P ++ RP V+LVVGVNG GKTT IGKL+ + AG V++AAGDTFR+AA+ Sbjct: 260 MEPVARPMPL-YARRPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVIIAAGDTFRAAAV 318 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 +QLK+W DR + + G+D A+ AY+A +A A+ VD+L+IDTAGRL N + LM + Sbjct: 319 EQLKVWGDRAGVPVMTAPEGADPASFAYDALTRAAAEGVDLLMIDTAGRLQNRADLMEEL 378 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 K++RV++++D APH+ L VLDATTGQNAL QVE+F ++ +GL+MTK+DGTA+GG L Sbjct: 379 AKIVRVIRKIDESAPHNTLLVLDATTGQNALAQVEVFRKISDVSGLVMTKLDGTAKGGVL 438 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 + + +P++ +GVGE I+DL PF ++F+A + G Sbjct: 439 VALADKFGLPIHAIGVGEQIDDLSPFDPEEFAAALVGI 476 >gi|258543517|ref|YP_003188950.1| cell division protein FtsY [Acetobacter pasteurianus IFO 3283-01] gi|256634595|dbj|BAI00571.1| cell division protein FtsY [Acetobacter pasteurianus IFO 3283-01] gi|256637651|dbj|BAI03620.1| cell division protein FtsY [Acetobacter pasteurianus IFO 3283-03] gi|256640705|dbj|BAI06667.1| cell division protein FtsY [Acetobacter pasteurianus IFO 3283-07] gi|256643760|dbj|BAI09715.1| cell division protein FtsY [Acetobacter pasteurianus IFO 3283-22] gi|256646815|dbj|BAI12763.1| cell division protein FtsY [Acetobacter pasteurianus IFO 3283-26] gi|256649868|dbj|BAI15809.1| cell division protein FtsY [Acetobacter pasteurianus IFO 3283-32] gi|256652858|dbj|BAI18792.1| cell division protein FtsY [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655912|dbj|BAI21839.1| cell division protein FtsY [Acetobacter pasteurianus IFO 3283-12] Length = 309 Score = 259 bits (662), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 146/306 (47%), Positives = 215/306 (70%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +L + +L +G + ++ KL GIT I + R+LDD EELEDLLI +D+G AVA++I+E Sbjct: 2 ALGFFSRLKQGLSRSTQKLGGGITGIFTKRKLDDEALEELEDLLITADMGPAVAERIIES 61 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + R+ +V+ + + +++ I +L P++KPF D +H+PHV+LVVGVNGVGKTT IG Sbjct: 62 FRSSRFGTEVTDEEIRNTLADEIATILEPVAKPFEPDPAHKPHVVLVVGVNGVGKTTTIG 121 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 K+++ ++ G KVM+ AGDTFR+AA++QL+IW +RT + G+DAA LA+EA K+ Sbjct: 122 KMARFFTEEGKKVMMVAGDTFRAAAVEQLQIWGERTGCPVIAGPPGADAAGLAFEALKRG 181 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ D+L +DTAGRLHN S LM + K+IRV+++ D APHSVL VLDATTGQNA+ QV Sbjct: 182 KAEGADLLFVDTAGRLHNKSALMEELAKIIRVMRKFDETAPHSVLLVLDATTGQNAVEQV 241 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 +F + TGL++TK+DG+ARGG ++ + +PV+ +GVGE DL PF A D++ Sbjct: 242 RVFRELVNVTGLVVTKLDGSARGGIVVALADQFGLPVHAVGVGEQAEDLRPFSAVDYARG 301 Query: 310 ITGCLD 315 + G D Sbjct: 302 LVGVAD 307 >gi|126728988|ref|ZP_01744803.1| Signal recognition particle-docking protein FtsY [Sagittula stellata E-37] gi|126710918|gb|EBA09969.1| Signal recognition particle-docking protein FtsY [Sagittula stellata E-37] Length = 357 Score = 259 bits (661), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 130/284 (45%), Positives = 193/284 (67%), Gaps = 2/284 (0%) Query: 31 GITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 G D RR LDD + E LE+LLI SD+GV A ++ + R + VS + + ++ Sbjct: 73 GQPDSAEPRRVLDDDMLESLEELLIASDMGVDTALRVTSNIAEGRMGRRVSAREIKELLA 132 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 E I +++ +++P + +P V+LVVGVNG GKTT IGKL+ + AG V++AAGDT Sbjct: 133 EEIARVMESVARPLPI-YPKKPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGDT 191 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+AA++QL++W +R + + GSD A+LA++A +AQA+ D+L+IDTAGRL N + Sbjct: 192 FRAAAVEQLQVWGERAGVPVLTAPEGSDPASLAFDAMGKAQAEGADLLMIDTAGRLQNRA 251 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 LM + K++RV+++ DP APH+ L VLDATTGQNAL QVE F +A +GL+MTK+DGT Sbjct: 252 DLMEELAKIVRVIRKKDPDAPHNTLLVLDATTGQNALIQVEAFRQLADVSGLVMTKLDGT 311 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 A+GG L+ + +P++ +GVGE I+DL PF ++F+A +TG Sbjct: 312 AKGGVLVALADKFGLPIHAIGVGEQIDDLAPFDPEEFAAALTGL 355 >gi|126740023|ref|ZP_01755713.1| signal recognition particle-docking protein FtsY [Roseobacter sp. SK209-2-6] gi|126718842|gb|EBA15554.1| signal recognition particle-docking protein FtsY [Roseobacter sp. SK209-2-6] Length = 378 Score = 258 bits (660), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 125/275 (45%), Positives = 191/275 (69%), Gaps = 1/275 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E+LE+LLI +D+GV A ++ + R K +S + + ++ + +++ Sbjct: 102 RVLDDDMLEQLEELLIAADMGVDTALRVTSNMAEGRLGKKLSAREIKELLAAEVARVMET 161 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 ++KP ++HRP V+LVVGVNG GKTT IGKL+ + AG KV++AAGDTFR+AA++QL Sbjct: 162 VAKPMPI-YAHRPQVVLVVGVNGSGKTTTIGKLASQFKGAGKKVVIAAGDTFRAAAVEQL 220 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W +R + + GSD A+LA++A +AQ + D+L+IDTAGRL N + LM + K+ Sbjct: 221 QVWGERAGVPVLTAPEGSDPASLAFDAMTKAQEEGADLLMIDTAGRLQNRADLMEELAKI 280 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+++ D APH+ L VLDATTGQNAL QVE F ++ +GL+MTK+DGTA+GG L+ + Sbjct: 281 VRVIRKKDETAPHNTLLVLDATTGQNALSQVETFRKISDVSGLVMTKLDGTAKGGVLVAL 340 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 +P++ +GVGE I+DL PF ++F+A +TG Sbjct: 341 ADKFGLPIHAIGVGEQIDDLAPFDPEEFAAALTGL 375 >gi|59713060|ref|YP_205836.1| fused Signal recognition particle (SRP) receptor: membrane binding protein/ protein [Vibrio fischeri ES114] gi|59481161|gb|AAW86948.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein [Vibrio fischeri ES114] Length = 412 Score = 258 bits (660), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 131/296 (44%), Positives = 198/296 (66%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + T + G + S +++DD + EELE+ L+ +D+G+ +I++ L Sbjct: 108 SFFARLKRSLQRTKENIGAGFFGLFSGKKIDDELFEELEEQLLIADVGMDTTVRIIDSLT 167 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K +D+ LY + E + ++L + +P + + PHVIL+VGVNGVGKTT IGK Sbjct: 168 EKASKQDLKDGEALYGLLKEEMAEILAKVEQPLEINEKNMPHVILMVGVNGVGKTTTIGK 227 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ + G VMLAAGDTFR+AA++QL++W R + G+D+A++ Y+A + A+ Sbjct: 228 LAKQFQNEGKSVMLAAGDTFRAAAVEQLQVWGQRNDVPVIAQHTGADSASVIYDAIEAAR 287 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+KVDV+I DTAGRL N S LM + K++RV+K++DP APH ++ LDA TGQNA+ Q + Sbjct: 288 ARKVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDPSAPHEIMLTLDAGTGQNAISQAK 347 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + I +IP+ F+GVGEGI+DL PFVA+DF Sbjct: 348 LFSDVAPVTGITLTKLDGTAKGGVIFSIADQFQIPIRFIGVGEGIDDLRPFVAQDF 403 >gi|255319577|ref|ZP_05360790.1| signal recognition particle-docking protein FtsY [Acinetobacter radioresistens SK82] gi|255303375|gb|EET82579.1| signal recognition particle-docking protein FtsY [Acinetobacter radioresistens SK82] Length = 366 Score = 258 bits (660), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 139/301 (46%), Positives = 198/301 (65%), Gaps = 2/301 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 S+ ++ +G T L +G+ +I I + +DD + EE+E+ L+ +DIGV + I+ L Sbjct: 61 SFFSRMKQGLTKTRKNLADGMVNILIGGKEIDDELLEEVEEQLLVADIGVEATKTIINNL 120 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + D+ LY + E + +L P KP + D + P+VILVVGVNGVGKTT IG Sbjct: 121 TERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKNPYVILVVGVNGVGKTTTIG 180 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K++ G KVMLAAGDTFR+AA +QL+IW +R V G+D+A++ ++AF+ A Sbjct: 181 KLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDVQVVAQGHGADSASVIFDAFESA 240 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +AK +DVLI DTAGRLHN S LM + K+ RV++++D APH ++ V+DA TGQNA+ QV Sbjct: 241 RAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQV 300 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 +MF G TGL +TK+DGTA+GG L I +P+ F+GVGE I+DL PF AK F A Sbjct: 301 QMFDEAVGLTGLTITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKAFVAA 360 Query: 310 I 310 + Sbjct: 361 L 361 >gi|315497314|ref|YP_004086118.1| signal recognition particle-docking protein ftsy [Asticcacaulis excentricus CB 48] gi|315415326|gb|ADU11967.1| signal recognition particle-docking protein FtsY [Asticcacaulis excentricus CB 48] Length = 313 Score = 258 bits (660), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 137/313 (43%), Positives = 201/313 (64%), Gaps = 14/313 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 W +LT+G + TS +L E +T + ++++ LD E LED+LI SD G +A I ++ Sbjct: 8 WFSRLTQGLSKTSQQLTEQVTSVFVANKTLDAAAVEALEDMLIESDFGPHIAASIAGKMA 67 Query: 72 TKRYAK--DVSVQRVLYDVSELIHK----MLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 K++A D +V+ L + K PLS P +P+++L VGVNG GKT Sbjct: 68 AKKFASTDDYAVKEALAEAIAEELKGREDRFDPLSGP-------KPYIVLFVGVNGSGKT 120 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T +GK++ ++ G KV++ AGDTFR+AA++QLK+WA+R ADF+ + G+DAA LAY+A Sbjct: 121 TTLGKIAAALTTKGAKVLIVAGDTFRAAAVEQLKVWAERAKADFMGRKTGADAAGLAYDA 180 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 +A+ + DV++IDTAGRL N LM + K++RV+K++DP APH L VLDAT G+NA Sbjct: 181 TVRAKEEGYDVVLIDTAGRLQNKQQLMDELLKIVRVIKKVDPDAPHETLLVLDATVGRNA 240 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L Q ++F A +GL+MTK+DGTARGG L+PI P+ +GVGE I+DL+PF A Sbjct: 241 LSQEQIFGRQAFVSGLVMTKLDGTARGGILVPIAKASDAPIKLIGVGEDIDDLQPFRASA 300 Query: 306 FSAVITGCLDYGE 318 F+ + G G+ Sbjct: 301 FARSMVGLEPLGD 313 >gi|262370504|ref|ZP_06063830.1| cell division protein [Acinetobacter johnsonii SH046] gi|262314846|gb|EEY95887.1| cell division protein [Acinetobacter johnsonii SH046] Length = 368 Score = 258 bits (659), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 144/311 (46%), Positives = 201/311 (64%), Gaps = 2/311 (0%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGV 60 S + ASE + ++ G T L +G+ +I I + +DD + EE+E+ L+ +DIGV Sbjct: 53 SEETEASERGGFFSRMKVGLTKTRKNLADGMVNILIGGKEIDDELLEEVEEQLLVADIGV 112 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 + I+ L + D+ LY + E + +L P KP + D + P+VILVVGV Sbjct: 113 DATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKTPYVILVVGV 172 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+K++ G KVMLAAGDTFR+AA +QL+IW +R + V G+D+A Sbjct: 173 NGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNNIAVVAQGHGADSA 232 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++AF+ A+AK VDVLI DTAGRLHN LM + K+ RV++++D APH V+ V+DA Sbjct: 233 SVIFDAFESARAKGVDVLIADTAGRLHNKGHLMQELTKVKRVMQKIDATAPHEVMLVVDA 292 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQNA+ QVEMF G TGL +TK+DGTA+GG L I +P+ F+GVGE I+DL Sbjct: 293 GTGQNAINQVEMFDEAVGLTGLTITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLR 352 Query: 300 PFVAKDFSAVI 310 PF AK F A + Sbjct: 353 PFSAKSFVAAL 363 >gi|332975302|gb|EGK12201.1| cell division protein FtsY [Psychrobacter sp. 1501(2011)] Length = 407 Score = 258 bits (659), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 135/301 (44%), Positives = 193/301 (64%), Gaps = 4/301 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 W ++ G + L EG+ +I I + +DD + EE+ED L+ +DIGV KI++ L Sbjct: 103 WFSRMKSGLTKSRKNLAEGVANILIGGKEIDDELLEEVEDQLLVADIGVEATDKIIKSLT 162 Query: 72 TKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + D+ LY EL+ +L P P D S +P VILVVGVNGVGKTT IG Sbjct: 163 EQTARGDLIYSHSLYKALQKELVE-ILEPKVAPLIIDTSKKPFVILVVGVNGVGKTTTIG 221 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K++ G VMLAAGDTFR+AA +QL+IW +R + V G+D+A++ ++A + A Sbjct: 222 KLAKRLQAEGKSVMLAAGDTFRAAATEQLQIWGERNNIPVVAQGHGADSASVVFDAMQSA 281 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +AK +DVLI DTAGRL N + LMA + K++R++++ DP APH + VLDA TGQNA+ QV Sbjct: 282 KAKNIDVLIADTAGRLQNKTHLMAELEKVVRIMRKSDPTAPHEGMIVLDAGTGQNAINQV 341 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 ++F+ TG+ +TK+DGTA+GG + I T IP+ ++GVGE I+DL F K F A Sbjct: 342 KIFNDAVPLTGITITKLDGTAKGGVVFNIANTTDIPIRYIGVGESIDDLRAFSPKQFVAA 401 Query: 310 I 310 + Sbjct: 402 L 402 >gi|148652808|ref|YP_001279901.1| signal recognition particle-docking protein FtsY [Psychrobacter sp. PRwf-1] gi|148571892|gb|ABQ93951.1| signal recognition particle-docking protein FtsY [Psychrobacter sp. PRwf-1] Length = 397 Score = 258 bits (659), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 136/310 (43%), Positives = 198/310 (63%), Gaps = 4/310 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62 QK + W ++ G + + L EG+ +I I + +DD + EE+ED L+ +DIGV Sbjct: 84 QKEDKKRGGWFSRMKSGLSKSRKNLAEGVANILIGGKEIDDELLEEVEDQLLVADIGVEA 143 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 KI++ L + D+ LY EL+ ++L P P D S +P VILVVGVN Sbjct: 144 TDKIIKSLTEQTARGDLIYSHSLYKALQKELV-EILEPKVAPLIIDTSKKPFVILVVGVN 202 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT IGKL+K++ G VMLAAGDTFR+AA +QL++W +R + V G+D+A+ Sbjct: 203 GVGKTTTIGKLAKRLQGEGKSVMLAAGDTFRAAATEQLQVWGERNNIPVVAQGHGADSAS 262 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++A + A+AK +DVLI DTAGRL N + LMA + K++R++++ DP APH + VLDA Sbjct: 263 VVFDAMQSAKAKNIDVLIADTAGRLQNKTHLMAELEKVVRIMRKSDPTAPHEGMIVLDAG 322 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNA+ QV++F+ TG+ +TK+DGTA+GG + I T IP+ ++GVGE I+DL Sbjct: 323 TGQNAINQVKIFNDAVPLTGITITKLDGTAKGGVVFNIANTTDIPIRYIGVGESIDDLRA 382 Query: 301 FVAKDFSAVI 310 F K F A + Sbjct: 383 FSPKQFVAAL 392 >gi|85708148|ref|ZP_01039214.1| signal recognition particle GTPase [Erythrobacter sp. NAP1] gi|85689682|gb|EAQ29685.1| signal recognition particle GTPase [Erythrobacter sp. NAP1] Length = 304 Score = 258 bits (659), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 138/304 (45%), Positives = 191/304 (62%), Gaps = 2/304 (0%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 S SW +L GF TS +L +T + + RLD+ +++ED LI SD+G A A +I + Sbjct: 2 STSWSDRLLGGFRKTSERLGANLTGVAT--RLDEATLDDVEDALIISDLGPAAAARIRAK 59 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L K + +++ + + V+E I ++L P++KP RP VILV+GVNG GKTT I Sbjct: 60 LKEKSFGLEITQRELKEAVAEEIAEILRPVAKPLEITAFPRPQVILVIGVNGSGKTTTIA 119 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ ++ V+LAAGDTFR+AAI QL WA+R D V G D A++ ++A KQA Sbjct: 120 KLAHLFTEDDYGVLLAAGDTFRAAAIGQLATWAERAGVDLVRGPEGGDPASIVFDAVKQA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +D L++DTAGRL N LM + K+ RVL RL+ APH V+ VLDAT GQNAL Q+ Sbjct: 180 TDTGIDALVVDTAGRLQNKKELMEELAKIRRVLGRLNEEAPHDVVLVLDATNGQNALSQI 239 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 ++F VAG TGLIMTK+DGTARGG L+ + +P++ +GVGE + DL PF + V Sbjct: 240 DVFQEVAGVTGLIMTKLDGTARGGVLVAAAEQYGLPIHAIGVGEKMEDLRPFDPDLVARV 299 Query: 310 ITGC 313 I G Sbjct: 300 IAGV 303 >gi|300114349|ref|YP_003760924.1| signal recognition particle-docking protein FtsY [Nitrosococcus watsonii C-113] gi|299540286|gb|ADJ28603.1| signal recognition particle-docking protein FtsY [Nitrosococcus watsonii C-113] Length = 352 Score = 258 bits (659), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 130/302 (43%), Positives = 196/302 (64%), Gaps = 2/302 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQK 65 A E S ++L + T L GI D++ ++ +DD + EE+E L+ +D+GV Q Sbjct: 27 AREKQSLFKRLRERLGRTRNNLTGGIADLMLGKKSIDDELLEEIEAQLLIADVGVEATQA 86 Query: 66 IVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 I+++L + K + + ++ + E + +L P ++P + +P VIL+VGVNGVGK Sbjct: 87 IIKDLTVRTSRKQLQDAEALMAALRENMQALLTPCNQPLIIPAAIQPFVILMVGVNGVGK 146 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+KK G VMLAAGDTFR+AA++QL++W +R + G+D+A++ ++ Sbjct: 147 TTTIGKLAKKFQAEGRSVMLAAGDTFRAAAVEQLQVWGERNQVPVMAQHGGADSASVIFD 206 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + AQA+ +DVLI DTAGRLH LM + K+ RV+ +++PHAPH ++ +DA TGQN Sbjct: 207 AVQSAQARGIDVLIADTAGRLHTQINLMEELKKIKRVMGKVNPHAPHEIMLTVDAGTGQN 266 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 AL Q + FH G TG+I+TK+DGTA+GG + I IP+ F+GVGEGI+DL PF A+ Sbjct: 267 ALNQAKQFHEAVGLTGIILTKLDGTAKGGVIFAIAKKMGIPIRFIGVGEGIDDLRPFNAE 326 Query: 305 DF 306 +F Sbjct: 327 EF 328 >gi|332995325|gb|AEF05380.1| signal recognition particle GTPase [Alteromonas sp. SN2] Length = 530 Score = 258 bits (658), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 132/316 (41%), Positives = 197/316 (62%), Gaps = 6/316 (1%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 E S +L + + T L G+ + + +DD + E+LE L+ +D+G+ QKI+ Sbjct: 215 EKKSLFSRLKESLSRTKANLGSGLVSLFKGKAIDDELYEDLETQLLVADVGMDTTQKIIT 274 Query: 69 ELLTKRYAKDVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGV 122 L KD+ L D+ + ++ K+ PLS N S P VIL+VGVNGV Sbjct: 275 HLTDSASRKDLKDAEALLDILKQQMAGMLSKVNEPLSDAINAHNSDEGPFVILMVGVNGV 334 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ G KVMLAAGDTFR+AA++QL++W +R S + G+D+A++ Sbjct: 335 GKTTTIGKLAKQFQQQGKKVMLAAGDTFRAAAVEQLQVWGERNSIPVIAQHTGADSASVL 394 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+++K D+LI DTAGRL N LM + K++RV+K+L+P+APH V+ LDA TG Sbjct: 395 YDALEAAKSRKTDILIADTAGRLQNKDNLMEELKKVVRVMKKLNPNAPHEVMLTLDAGTG 454 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI+DL F Sbjct: 455 QNAISQAKLFNQAVGLTGITLTKLDGTAKGGVIFSIADKFGIPIRYIGVGEGIDDLRQFD 514 Query: 303 AKDFSAVITGCLDYGE 318 ++F + +D GE Sbjct: 515 GQEFIDALFSEIDSGE 530 >gi|330831384|ref|YP_004394336.1| ABC transporter permease [Aeromonas veronii B565] gi|328806520|gb|AEB51719.1| ABC transporter permease component [Aeromonas veronii B565] Length = 557 Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 127/295 (43%), Positives = 190/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T + G + +++DD + EELE L+ +D+GV +I+E L+ Sbjct: 254 FFARLKRSLVRTKENIGSGFFGLFRGKKIDDELFEELETQLLTADLGVDTTTRIIEGLVQ 313 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + +ML + +P D S +P+VIL+VGVNGVGKTT IGKL Sbjct: 314 HADRKQLKDAEALYGLLKQDMGEMLAKVEQPLVIDTSKKPYVILMVGVNGVGKTTTIGKL 373 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +K+ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ Y+A + A++ Sbjct: 374 AKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIYDAIEAARS 433 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + DVLI DTAGRL N S LM + K++RV+K+LD APH ++ LDA TGQNAL Q ++ Sbjct: 434 RGADVLIADTAGRLQNKSNLMEELKKVVRVMKKLDEEAPHEIMLTLDAGTGQNALSQAKL 493 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G TG+ +TK+DGTA+GG + + +IP+ ++GVGEGI+DL PFVA DF Sbjct: 494 FSEAVGLTGITLTKLDGTAKGGVIFAVADKFQIPIRYIGVGEGIDDLRPFVANDF 548 >gi|83950639|ref|ZP_00959372.1| signal recognition particle-docking protein FtsY [Roseovarius nubinhibens ISM] gi|83838538|gb|EAP77834.1| signal recognition particle-docking protein FtsY [Roseovarius nubinhibens ISM] Length = 489 Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 126/274 (45%), Positives = 188/274 (68%), Gaps = 1/274 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E+LE+LLI +D+GV A ++ + R K +S Q + ++ I +++ P Sbjct: 214 RALDDDMLEQLEELLITADMGVDTALRVTANMAEGRMGKRLSTQEIKELLAAEIARIMEP 273 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +++P ++ P V+LVVGVNG GKTT IGKL+ + AG V++AAGDTFR+AA++QL Sbjct: 274 VARPMPL-YTKSPQVVLVVGVNGSGKTTTIGKLASQFKAAGKSVVIAAGDTFRAAAVEQL 332 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W DR + + GSD A+LA++A +AQ D+L+IDTAGRL N + LM + K+ Sbjct: 333 QVWGDRAGVPVLTAPEGSDPASLAFDAMDRAQRDGADLLMIDTAGRLQNRADLMEELAKI 392 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+++ D APH+ L VLDATTGQNAL QV+ F +A +GL+MTK+DGTA+GG L+ + Sbjct: 393 VRVIRKKDETAPHNTLLVLDATTGQNALSQVKTFQELADVSGLVMTKLDGTAKGGVLVAL 452 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +P++ +GVGE I+DL PF +DF+A +TG Sbjct: 453 ADKFGLPIHAIGVGEQIDDLAPFDPEDFAAALTG 486 >gi|332531762|ref|ZP_08407647.1| signal recognition particle receptor protein FtsY [Pseudoalteromonas haloplanktis ANT/505] gi|332038738|gb|EGI75180.1| signal recognition particle receptor protein FtsY [Pseudoalteromonas haloplanktis ANT/505] Length = 432 Score = 257 bits (656), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 123/295 (41%), Positives = 189/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + + G I S +++DD + E+LE L+ +D+GV K+++ L Sbjct: 126 FFSRLKKGLLKTRVNIGSGFASIFSGKKIDDELFEDLETQLLTADLGVDTTMKLIDRLTD 185 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY++ + + ML +P +P VIL+VGVNGVGKTT IGK+ Sbjct: 186 AANRKQLKDGDALYELMKQEMAAMLKTAEQPLVISEDKKPFVILMVGVNGVGKTTTIGKM 245 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +K+ + G VMLAAGDTFR+AA++QL++W +R S + G+D+A++ ++AF+ A+A Sbjct: 246 AKQFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNSIPVIAQHTGADSASVVFDAFQAAKA 305 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N LM + K+ RV+K++DP APH V+ +DA TGQNA+ QV + Sbjct: 306 RNIDVLIADTAGRLQNKDNLMQELEKIARVMKKIDPDAPHEVMLTIDAGTGQNAISQVNL 365 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ ++K+DGTA+GG + + IP+ ++GVGEGI+DL F + DF Sbjct: 366 FNQCVGLTGITLSKLDGTAKGGVIFAVADKFNIPIRYIGVGEGIDDLRAFKSDDF 420 >gi|315127796|ref|YP_004069799.1| cell division transporter substrate-binding protein [Pseudoalteromonas sp. SM9913] gi|315016310|gb|ADT69648.1| cell division transporter substrate-binding protein [Pseudoalteromonas sp. SM9913] Length = 498 Score = 257 bits (656), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 188/295 (63%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + + G I S +++DD + EELE L+ +D+GV K+++ L Sbjct: 192 FFSRLKKGLLKTRVNIGSGFASIFSGKKIDDELFEELETQLLTADLGVDTTMKLIDSLTD 251 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY++ + + ML +P +P VIL+VGVNGVGKTT IGK+ Sbjct: 252 AADRKQLKDGDALYELMKQEMATMLKTAEQPLEIPADKKPFVILMVGVNGVGKTTTIGKM 311 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +K+ + G VMLAAGDTFR+AA++QL++W +R S + G+D+A++ ++AF+ A+A Sbjct: 312 AKQFQNQGKSVMLAAGDTFRAAAVEQLQVWGERNSIPVIAQHTGADSASVVFDAFQAAKA 371 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N LM + K+ RV+K++DP APH V+ +DA TGQNA+ QV + Sbjct: 372 RNVDVLIADTAGRLQNKDNLMQELEKIARVMKKVDPDAPHEVMLTIDAGTGQNAISQVNL 431 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ ++K+DGTA+GG + + IP+ ++GVGE I+DL F + DF Sbjct: 432 FNQCVGLTGITLSKLDGTAKGGVIFAVADKFNIPIRYIGVGESIDDLRTFKSDDF 486 >gi|58039892|ref|YP_191856.1| cell division protein FtsY-like protein [Gluconobacter oxydans 621H] gi|58002306|gb|AAW61200.1| Cell division protein FtsY-like protein [Gluconobacter oxydans 621H] Length = 319 Score = 257 bits (656), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 135/300 (45%), Positives = 203/300 (67%), Gaps = 4/300 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L +G + +S +L + + R+LD+ EELED LI +D+G AVA++++E + Sbjct: 4 FFSRLKQGLSRSSSRLGA----VFTHRKLDETALEELEDELIAADLGPAVAERVIENFRS 59 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 R+ KDV+ + ++ I ++L P++ PF D +PHV+LVVGVNGVGKTT IGK++ Sbjct: 60 TRFGKDVTSDEIRETLATEIARVLEPVAIPFEPDPKKKPHVVLVVGVNGVGKTTTIGKMA 119 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 + ++ G VML AGDTFR+AA++QL++W R + + + G+DAA LAY+ K+A Sbjct: 120 RHYTEEGKSVMLVAGDTFRAAAVEQLEVWGKRANVPVIAGKHGADAAGLAYDGLKRATEA 179 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 D+L+IDTAGRLHN LM + K+IRV+++ D APHSVL VLDATTGQNA+ QV +F Sbjct: 180 GTDLLLIDTAGRLHNKGALMEELAKIIRVMRKFDETAPHSVLLVLDATTGQNAIEQVRVF 239 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + TGLI+TK+DG+ARGG ++ + K+PV+ +GVGE DL PF A++++ + G Sbjct: 240 RELVNVTGLIVTKLDGSARGGIVVALAEQFKLPVHMVGVGEQAEDLRPFSAQEYAKGLVG 299 >gi|262379876|ref|ZP_06073032.1| signal recognition particle-docking protein FtsY [Acinetobacter radioresistens SH164] gi|262299333|gb|EEY87246.1| signal recognition particle-docking protein FtsY [Acinetobacter radioresistens SH164] Length = 366 Score = 256 bits (655), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 138/300 (46%), Positives = 197/300 (65%), Gaps = 2/300 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + ++ +G T L +G+ +I I + +DD + EE+E+ L+ +DIGV + I+ L Sbjct: 62 FFSRMKQGLTKTRKNLADGMVNILIGGKEIDDELLEEVEEQLLVADIGVEATKTIINNLT 121 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + D+ LY + E + +L P KP + D + P+VILVVGVNGVGKTT IGK Sbjct: 122 ERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKNPYVILVVGVNGVGKTTTIGK 181 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K++ G KVMLAAGDTFR+AA +QL+IW +R V G+D+A++ ++AF+ A+ Sbjct: 182 LAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDVQVVAQGHGADSASVIFDAFESAR 241 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 AK +DVLI DTAGRLHN S LM + K+ RV++++D APH ++ V+DA TGQNA+ QV+ Sbjct: 242 AKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQ 301 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 MF G TGL +TK+DGTA+GG L I +P+ F+GVGE I+DL PF AK F A + Sbjct: 302 MFDEAVGLTGLTITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKAFVAAL 361 >gi|90023237|ref|YP_529064.1| signal recognition particle-docking protein FtsY [Saccharophagus degradans 2-40] gi|89952837|gb|ABD82852.1| signal recognition particle-docking protein FtsY [Saccharophagus degradans 2-40] Length = 375 Score = 256 bits (655), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 137/314 (43%), Positives = 207/314 (65%), Gaps = 6/314 (1%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKI 66 SE L ++ +G + TS + G+++++ ++ +DD + EE+E LL+ +D+G+ I Sbjct: 62 SEKLGVFARIKRGLSRTSNQFANGLSNLLLGKKAIDDELLEEIETLLLMADVGMDATTDI 121 Query: 67 VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSH----RPHVILVVGVNG 121 +E+L + K ++ LYD + E + K+L + PF+ + SH P+VILVVGVNG Sbjct: 122 IEDLTDRVARKQLNDSEALYDALRESLAKLLQQVEVPFDLEQSHAPLPSPYVILVVGVNG 181 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT IGKL+K+ + G V+LAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 182 VGKTTTIGKLAKRYQNQGKSVILAAGDTFRAAAVEQLQVWGERNKVPVIAQHSGADSASV 241 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + AQA+ +DVLI DTAGRLHN S LM + K+ RV+ +LD APH VL VLDA T Sbjct: 242 IFDAVQSAQARGIDVLIADTAGRLHNKSNLMEELAKVKRVMGKLDNTAPHEVLLVLDAGT 301 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q + F A TGL++TK+DGTA+GG + + H IPV ++GVGE ++DL+PF Sbjct: 302 GQNAVSQADHFKKAADVTGLVLTKLDGTAKGGIIFALSKKHNIPVRYIGVGESVDDLQPF 361 Query: 302 VAKDFSAVITGCLD 315 AK F+ + D Sbjct: 362 DAKKFTEALFSTSD 375 >gi|260577029|ref|ZP_05845009.1| signal recognition particle-docking protein FtsY [Rhodobacter sp. SW2] gi|259020785|gb|EEW24101.1| signal recognition particle-docking protein FtsY [Rhodobacter sp. SW2] Length = 339 Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 125/276 (45%), Positives = 187/276 (67%), Gaps = 1/276 (0%) Query: 37 SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96 S R LDD + E LE++LI +D+GV A ++ + R K VS + ++ I +++ Sbjct: 62 SRRVLDDAMLERLEEVLIEADMGVDCALRVTANIAEGRMGKRVSTAELKEALATEIARIM 121 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 P+++P + RP V+LVVGVNG GKTT IGKL+ + AG V++AAGDTFR+AA++ Sbjct: 122 TPVARPLPL-YPSRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKSVVIAAGDTFRAAAVE 180 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL++W R + + GSD A+LA++A +AQA D+L+IDTAGRL N + LM + Sbjct: 181 QLQVWGQRAGVPVLTAPEGSDPASLAFDAMTKAQADGADLLMIDTAGRLQNRADLMEELS 240 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 K++RV+++ DP APH+ + VLDATTGQNA+ QVE+F +A +GL+MTK+DGTA+GG L+ Sbjct: 241 KIVRVIRKKDPDAPHNTILVLDATTGQNAINQVEIFRKLADVSGLVMTKLDGTAKGGILV 300 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + +P++ +GVGE I+DL PF +DF+ + G Sbjct: 301 ALADKFGLPIHAIGVGEQIDDLAPFDPEDFARALVG 336 >gi|302877705|ref|YP_003846269.1| signal recognition particle-docking protein FtsY [Gallionella capsiferriformans ES-2] gi|302580494|gb|ADL54505.1| signal recognition particle-docking protein FtsY [Gallionella capsiferriformans ES-2] Length = 321 Score = 256 bits (654), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 140/313 (44%), Positives = 205/313 (65%), Gaps = 12/313 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAV 62 ++ +E SWI +L G + T +L D+ S ++DD + EELE +LI +D+G+ Sbjct: 14 EETVAEKRSWIDRLKAGLSRTGNQL----ADLFSRGGKIDDDLYEELETILITADVGMDA 69 Query: 63 AQKIVEELLTKRYAKD---VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 ++ +L +R+ ++ V + + ++ + K+L PL+ P + + +H+P VI++VGV Sbjct: 70 TNTLLADL--RRHVREHKLVEAEELKAGLAHCLLKLLGPLAVPLHAE-THKPFVIMMVGV 126 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NG GKTT IGKL+K + GL VMLAAGDTFR+AA +QL W +R + + + G DAA Sbjct: 127 NGAGKTTSIGKLAKYLQSQGLSVMLAAGDTFRAAAREQLMTWGERNNVTVIAQQSG-DAA 185 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ Y+A + AQA+K+DV++ DTAGRL + LM I K+ RV+ ++ P APH VL VLDA Sbjct: 186 AVIYDAVQAAQARKIDVVLADTAGRLTTQAHLMEEIKKVKRVIAKVLPDAPHEVLLVLDA 245 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQNAL QV+ F A G TGLI+TK+DGTA+GG + I H IPV F+GVGEG++DL Sbjct: 246 NTGQNALSQVKAFDAALGVTGLILTKLDGTAKGGVIAAIAKAHPIPVRFIGVGEGLDDLR 305 Query: 300 PFVAKDFSAVITG 312 PF A++F + G Sbjct: 306 PFDAQEFIDALLG 318 >gi|110835427|ref|YP_694286.1| cell division protein FtsY [Alcanivorax borkumensis SK2] gi|110648538|emb|CAL18014.1| Cell division protein FtsY [Alcanivorax borkumensis SK2] Length = 397 Score = 256 bits (654), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 131/296 (44%), Positives = 193/296 (65%), Gaps = 3/296 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 W R + +G + T L +G+ D+ + ++ +DD + EE+E L+ +D+GV IV+ L Sbjct: 93 WTR-MKQGMSKTRKGLGKGLADLLVGAKEIDDEIFEEIETQLLVADVGVEATDVIVQALT 151 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + +++ LY+ + + K+L+P+ +P D S +P+VIL+VGVNGVGKTT IGK Sbjct: 152 DQVSREELVDADALYESLQNELRKLLVPVDQPMQIDSSKKPYVILMVGVNGVGKTTTIGK 211 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + G VMLAAGDTFR+AA++QL++W +R V G+D+A++ Y+A + AQ Sbjct: 212 LACRFKAEGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVVAQHTGADSASVVYDAVQAAQ 271 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 ++ D+LI DTAGRLH LM + K+ RV+K+L P APH VL VLDA TGQNA+ Q E Sbjct: 272 SRGADILIADTAGRLHTRGNLMDELTKVTRVMKKLIPDAPHEVLLVLDAGTGQNAINQAE 331 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F AG TGL +TK+DGTA+GG L + +P+ F+GVGE + DL PF A++F Sbjct: 332 QFRDAAGVTGLALTKLDGTAKGGILFALAKRTGLPIRFIGVGEQLEDLRPFHAEEF 387 >gi|163733314|ref|ZP_02140757.1| signal recognition particle-docking protein FtsY [Roseobacter litoralis Och 149] gi|161393102|gb|EDQ17428.1| signal recognition particle-docking protein FtsY [Roseobacter litoralis Och 149] Length = 485 Score = 256 bits (654), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 127/279 (45%), Positives = 191/279 (68%), Gaps = 1/279 (0%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94 I+ R LDD + E+LE+LLI +D+GV A ++V + R K +SVQ + ++ I + Sbjct: 205 IVVRRTLDDDMLEQLEELLIAADMGVDTALRVVANMAEGRVGKKLSVQEIKELLASEIAQ 264 Query: 95 MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 ++ P++KP + P V+LVVGVNG GKTT IGKL+ + AG KV++AAGDTFR+AA Sbjct: 265 IMEPVAKPLPL-YPRTPQVVLVVGVNGSGKTTTIGKLASQFRAAGKKVVIAAGDTFRAAA 323 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 ++QL++W DR + + GSD A+LA++A +AQ D+L+IDTAGRL N + LM Sbjct: 324 VEQLQVWGDRAGVPVLTAPEGSDPASLAFDAMVKAQQDGADLLLIDTAGRLQNRTDLMEE 383 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + K++RV+++ D APH+ L VLDATTGQNAL QV++F ++ +GL+MTK+DGTA+GG Sbjct: 384 LAKIVRVIRKKDETAPHNTLLVLDATTGQNALNQVKVFSDISDVSGLVMTKLDGTAKGGV 443 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 L+ + +P++ +GVGE I+DL+ F +DF+ + G Sbjct: 444 LVALADKFGLPIHAIGVGEQIDDLDAFDPEDFADALMGL 482 >gi|23008862|ref|ZP_00050130.1| COG0552: Signal recognition particle GTPase [Magnetospirillum magnetotacticum MS-1] Length = 218 Score = 256 bits (654), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 121/215 (56%), Positives = 157/215 (73%) Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 ++ P D + +P+VIL VGVNG GKTT IGKLS K G VMLAAGDTFR+ AI+QL Sbjct: 1 MALPITIDSAKKPYVILTVGVNGAGKTTTIGKLSLKFKAEGRSVMLAAGDTFRAPAIEQL 60 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W +RT + GSDAA LA++AFK+A+ DVL+IDTAGRL N + LMA + K+ Sbjct: 61 RVWGERTGTPVISRAQGSDAAGLAFDAFKEARENGTDVLLIDTAGRLQNKAGLMAELEKI 120 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+++LDP APH+ L VLDAT GQNAL QVE+F A +GL+MTK+DGTARGG L+ + Sbjct: 121 VRVIRKLDPEAPHATLLVLDATVGQNALSQVELFSQAAPVSGLVMTKLDGTARGGILVAL 180 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 +PV+F+GVGEG+ DLEPF A+DF+ ITG Sbjct: 181 AAKFGLPVHFIGVGEGVEDLEPFAARDFARAITGL 215 >gi|145300820|ref|YP_001143661.1| cell division protein FtsY [Aeromonas salmonicida subsp. salmonicida A449] gi|142853592|gb|ABO91913.1| cell division protein FtsY [Aeromonas salmonicida subsp. salmonicida A449] Length = 631 Score = 256 bits (654), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 126/295 (42%), Positives = 191/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T + G + S +++DD + EELE L+ +D+GV ++I++ L+ Sbjct: 328 FFARLKRSLVRTKENIGSGFFGLFSGKKIDDDLFEELETQLLTADLGVDTTRRIIDGLVQ 387 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ML + +P D S +P+VIL+VGVNGVGKTT IGKL Sbjct: 388 HADRKQLKDAEALYGLLKQDMGAMLAQVEQPLVIDTSKKPYVILMVGVNGVGKTTTIGKL 447 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +K+ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ Y+A + A++ Sbjct: 448 AKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIYDAIEAARS 507 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + DVLI DTAGRL N S LM + K++RV+K+LD APH ++ LDA TGQNAL Q ++ Sbjct: 508 RGADVLIADTAGRLQNKSNLMEELKKVVRVMKKLDEEAPHEIMLTLDAGTGQNALSQAKL 567 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G G+++TK+DGTA+GG + + +IP+ ++GVGEGI+DL PFVA DF Sbjct: 568 FSEAVGLDGIVLTKLDGTAKGGVIFAVADKFQIPIRYIGVGEGIDDLRPFVANDF 622 >gi|13377875|gb|AAK20880.1|AF334761_1 cell division protein FtsY [Aeromonas hydrophila] Length = 333 Score = 256 bits (654), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 126/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + + + T + G + S +++DD + EELE L+ +D+GV ++I++ L+ Sbjct: 30 FFARFKRSMVRTKENIGSGFFGLFSGKKIDDELFEELETQLLTADLGVDTTRRIIDGLVQ 89 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ML + +P D S +P+VIL+VGVNGVGKTT IGKL Sbjct: 90 HADRKQLKDAEALYGLLKQDMGAMLAQVEQPLVIDTSKKPYVILMVGVNGVGKTTTIGKL 149 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +K+ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ Y+A + A++ Sbjct: 150 AKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIYDAIEAARS 209 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + DVLI DTAGRL N S LM + K++RV+K+LD APH V+ LDA TGQNAL Q ++ Sbjct: 210 RGADVLIADTAGRLQNKSNLMEELKKVVRVMKKLDEEAPHEVMLTLDAGTGQNALSQAKL 269 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G G+++TK+DGTA+GG + + +IP+ ++GVGEGI+DL PFVA DF Sbjct: 270 FSEAVGLDGIVLTKLDGTAKGGVIFAVADKFQIPIRYIGVGEGIDDLRPFVANDF 324 >gi|237809748|ref|YP_002894188.1| signal recognition particle-docking protein FtsY [Tolumonas auensis DSM 9187] gi|237502009|gb|ACQ94602.1| signal recognition particle-docking protein FtsY [Tolumonas auensis DSM 9187] Length = 435 Score = 256 bits (654), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 125/296 (42%), Positives = 187/296 (63%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S +L KG T + G + ++LDD + +ELE L+ +D+GV Q+I++ L+ Sbjct: 130 SLFGRLVKGLMRTRESIGAGFMALFRGKKLDDDLFDELETQLLTADLGVETTQRIMQGLI 189 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + + LYD+ + + +L P+S+P D S P+VIL++GVNGVGKTT IGK Sbjct: 190 KQAKFHQLKDAEALYDLLKQEMAAILQPVSQPLQIDSSKTPYVILMIGVNGVGKTTTIGK 249 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K G VMLAAGDTFR+AA++QL++W R + G+D+A++ ++A + A+ Sbjct: 250 LAKHFQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNHIPVIAQHTGADSASVIFDAIQAAK 309 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 ++ +D+LI DTAGRL N LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q + Sbjct: 310 SRNIDILIADTAGRLQNKGHLMEELKKIVRVMKKLDDSAPHEVMLTLDASTGQNAISQAK 369 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F G G+ +TK+DGTA+GG + I IP+ ++GVGE I DL PF A DF Sbjct: 370 LFGEAVGVNGITLTKLDGTAKGGVIFAIANQFGIPIRYIGVGEAIEDLRPFEANDF 425 >gi|332308276|ref|YP_004436127.1| signal recognition particle-docking protein FtsY [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175605|gb|AEE24859.1| signal recognition particle-docking protein FtsY [Glaciecola agarilytica 4H-3-7+YE-5] Length = 483 Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 122/297 (41%), Positives = 194/297 (65%), Gaps = 1/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + + KL + + T + L G + + +DD + EELE L+ +D+G+ KI+++L Sbjct: 169 MGLLAKLRQSLSRTKVNLGSGFVSLFRGKAIDDDLYEELETQLLVADVGMDTTNKIIKKL 228 Query: 71 LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + LY + + + ++L +S+P + P VIL+VGVNGVGKTT IG Sbjct: 229 TDGAKRNQLKDGDALYQLLKQQMSEILQEVSQPLVPEADEGPFVILMVGVNGVGKTTTIG 288 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 K++K+ G KVMLAAGDTFR+AA++QL++W +R + + + GSD+A++ Y+A + A Sbjct: 289 KMAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQKTGSDSASVIYDALESA 348 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ VDVLI DTAGRL N LM + K++RV+++++P+APH V+ LDA TGQNA+ Q Sbjct: 349 KARNVDVLIADTAGRLQNKEHLMEELKKVLRVMRKINPNAPHEVMLTLDAATGQNAVSQT 408 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++F+ G +G+ +TK+DGTA+GG + + KIP+ ++GVGEGI+DL PF + +F Sbjct: 409 KLFNQAVGLSGITLTKLDGTAKGGVIFALADQFKIPIRYIGVGEGIDDLRPFASDEF 465 >gi|117620356|ref|YP_854900.1| cell division protein FtsY [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561763|gb|ABK38711.1| cell division protein FtsY [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 633 Score = 256 bits (653), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 127/295 (43%), Positives = 190/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T + G + +++DD + EELE L+ +D+GV +I+E L+ Sbjct: 330 FFARLKRSLVRTRENIGSGFFGLFRGKKIDDELFEELETQLLTADLGVDTTSRIIEGLVQ 389 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + +ML + +P D S +P+VIL+VGVNGVGKTT IGKL Sbjct: 390 HADRKQLKDAEALYGLLKQDMGEMLAKVEQPLVIDTSKKPYVILMVGVNGVGKTTTIGKL 449 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +K+ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ Y+A + A++ Sbjct: 450 AKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIYDAIEAARS 509 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + DVLI DTAGRL N S LM + K++RV+K+LD APH ++ LDA TGQNAL Q ++ Sbjct: 510 RGADVLIADTAGRLQNKSNLMEELKKVVRVMKKLDDAAPHEIMLTLDAGTGQNALSQAKL 569 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G TG+ +TK+DGTA+GG + + +IP+ ++GVGEGI+DL PFVA DF Sbjct: 570 FSEAVGLTGITLTKLDGTAKGGVIFAVADKFQIPIRYIGVGEGIDDLRPFVANDF 624 >gi|262277881|ref|ZP_06055674.1| signal recognition particle-docking protein FtsY [alpha proteobacterium HIMB114] gi|262224984|gb|EEY75443.1| signal recognition particle-docking protein FtsY [alpha proteobacterium HIMB114] Length = 305 Score = 256 bits (653), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 127/298 (42%), Positives = 195/298 (65%), Gaps = 4/298 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + +K+++G TS GI DI + + + ++L D +I SDIG+ + +KI++ + Sbjct: 1 MQIFKKISEGLKKTSKNFGNGINDIFKKSKPSNEILQDLGDFMISSDIGLPLTEKIIQNI 60 Query: 71 LTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 K+++ + Q+ ++ +E++ +L P+ + ++ S+ ILV GVNG GKTT I Sbjct: 61 KNKKFSDEELNQKNFLEILTNEMLE-ILEPVEENI-FNKSNGLKTILVCGVNGTGKTTTI 118 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL K + D KV++ A DTFR+AAI+QL W + S D S+ G+D AA+A++ ++ Sbjct: 119 GKLCKILKDNNSKVIVGAADTFRAAAIEQLDNWCQKNSIDIEKSDPGADPAAVAFKTLEK 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ D IIDTAGRLHN LM K+IRV+K++D +AP + VLDATTGQNAL Q Sbjct: 179 AKLNNYDYCIIDTAGRLHNKKNLMDEFSKIIRVMKKIDENAPEKTIIVLDATTGQNALNQ 238 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +E F+ ++ +GLIMTK+DGTA+GG L+ I +K+P+Y +GVGE ++DL+PFVAKDF Sbjct: 239 IEEFNKISKLSGLIMTKLDGTAKGGVLLSITEKYKLPIYAIGVGEQVDDLQPFVAKDF 296 >gi|238921553|ref|YP_002935068.1| cell division protein FtsY, [Edwardsiella ictaluri 93-146] gi|238871122|gb|ACR70833.1| cell division protein FtsY, putative [Edwardsiella ictaluri 93-146] Length = 557 Score = 256 bits (653), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 129/300 (43%), Positives = 192/300 (64%), Gaps = 12/300 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + +ELE+ LI +D+GV +KI++ L Sbjct: 255 FFARLKRSLVKTRQNLGSGFFSLFRGKKIDDDLFDELEEQLIVADVGVETTRKIIDSLTA 314 Query: 73 KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTT 126 K++ LY ++ E++ K+ PL D S H+P VIL+VGVNGVGKTT Sbjct: 315 HASRKELKDAEALYGKLKEEMGEILQKVDAPL------DISGHQPFVILMVGVNGVGKTT 368 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+++ G VMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A Sbjct: 369 TIGKLARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNHISVIAQHTGADSASVIFDAI 428 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+A+KVDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Sbjct: 429 QAAKARKVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEQAPHEVMLTIDASTGQNAV 488 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q +F+ G TG+ +TK+DGTA+GG + + IP+ ++GVGEGI DL PF A DF Sbjct: 489 SQARLFNEAVGLTGITLTKLDGTAKGGVIFSVADRFGIPIRYIGVGEGIEDLRPFKADDF 548 >gi|77165401|ref|YP_343926.1| cell division transporter substrate-binding protein FtsY [Nitrosococcus oceani ATCC 19707] gi|254433367|ref|ZP_05046875.1| signal recognition particle-docking protein FtsY [Nitrosococcus oceani AFC27] gi|76883715|gb|ABA58396.1| signal recognition particle-docking protein FtsY [Nitrosococcus oceani ATCC 19707] gi|207089700|gb|EDZ66971.1| signal recognition particle-docking protein FtsY [Nitrosococcus oceani AFC27] Length = 362 Score = 256 bits (653), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 131/313 (41%), Positives = 201/313 (64%), Gaps = 3/313 (0%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGV 60 S++ A E S ++L T L GI D++ ++ +DD + EE+E L+ +D+GV Sbjct: 32 SSETGAGEKQSLFKRLRDRLGRTRGNLTGGIADLMLGKKSIDDELLEEIETQLLIADLGV 91 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 Q I+E+L + + + L + + E + ++L P ++P + +P VIL+VGV Sbjct: 92 EATQAIIEDLTIRTSREQLQDAEALMEALRENMQELLTPCNQPLIIPAAIKPFVILMVGV 151 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+KK G VMLAAGDTFR+AA++QL++W +R + G+D+A Sbjct: 152 NGVGKTTTIGKLAKKFQAEGRSVMLAAGDTFRAAAVEQLQVWGERNQVPVMAQHSGADSA 211 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + AQ + +DVLI DTAGRLH + LM + K+ RV+ +++PHAPH ++ +DA Sbjct: 212 SVIFDAVQSAQVRGIDVLIADTAGRLHTQTNLMEELKKVKRVMGKVNPHAPHEIMLTVDA 271 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQNAL Q FH TG+I+TK+DGTA+GG + I +P+ F+GVGEGI+DL Sbjct: 272 GTGQNALNQARQFHEAVDLTGIILTKLDGTAKGGVIFAIAKKMGLPIRFIGVGEGIDDLR 331 Query: 300 PFVAKDF-SAVIT 311 PF A++F +A++T Sbjct: 332 PFNAEEFVNALLT 344 >gi|109900243|ref|YP_663498.1| signal recognition particle-docking protein FtsY [Pseudoalteromonas atlantica T6c] gi|109702524|gb|ABG42444.1| signal recognition particle-docking protein FtsY [Pseudoalteromonas atlantica T6c] Length = 485 Score = 256 bits (653), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 123/292 (42%), Positives = 187/292 (64%), Gaps = 1/292 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 KL + + T L G + + +DD + EELE L+ +D+G+ KI+ L Sbjct: 176 KLRQSLSRTKENLGSGFISLFRGKAIDDDLFEELETQLLVADVGIDTTSKIISRLTDSAK 235 Query: 76 AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 + LY + + + +L +S+P P VIL+VGVNGVGKTT IGK++K+ Sbjct: 236 RNQLKDGEALYQLLKQQMSNILQEVSQPLEPKSEDGPFVILMVGVNGVGKTTTIGKMAKQ 295 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G KVMLAAGDTFR+AA++QL++W +R + + + GSD+A++ Y+A + A+A+ V Sbjct: 296 FQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQKTGSDSASVIYDALESAKARNV 355 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 DVLI DTAGRL N LM + K++RV+++++P+APH V+ LDA TGQNA+ Q ++F+ Sbjct: 356 DVLIADTAGRLQNKDHLMEELKKVVRVMRKINPNAPHEVMLTLDAATGQNAVSQTKLFNQ 415 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G TG+ +TK+DGTA+GG + + KIP+ ++GVGEGI+DL PF + +F Sbjct: 416 AVGLTGITLTKLDGTAKGGVIFALADQFKIPIRYIGVGEGIDDLRPFASDEF 467 >gi|254427512|ref|ZP_05041219.1| signal recognition particle-docking protein FtsY, putative [Alcanivorax sp. DG881] gi|196193681|gb|EDX88640.1| signal recognition particle-docking protein FtsY, putative [Alcanivorax sp. DG881] Length = 394 Score = 256 bits (653), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 131/296 (44%), Positives = 193/296 (65%), Gaps = 3/296 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 W R + +G + T L +G+ D+ + ++ +DD + EE+E L+ +D+GV IV+ L Sbjct: 90 WTR-MKQGMSKTRKGLGKGLADLLVGAKEIDDEIFEEIETQLLVADVGVEATDVIVQALT 148 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + +++ LY+ + + K+L+P+ +P D S +P+VIL+VGVNGVGKTT IGK Sbjct: 149 DQVTREELVDADALYESLQNELRKLLVPVDQPMQIDGSKKPYVILMVGVNGVGKTTTIGK 208 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + G VMLAAGDTFR+AA++QL++W +R V G+D+A++ Y+A + AQ Sbjct: 209 LACRFKAEGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVVAQHTGADSASVVYDAVQAAQ 268 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 ++ D+LI DTAGRLH LM + K+ RV+K+L P APH VL VLDA TGQNA+ Q E Sbjct: 269 SRGADILIADTAGRLHTRGNLMEELTKVTRVMKKLIPDAPHEVLLVLDAGTGQNAINQAE 328 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F AG TGL +TK+DGTA+GG L + +P+ F+GVGE + DL PF A++F Sbjct: 329 QFRDAAGVTGLALTKLDGTAKGGILFALAKRTGLPIRFIGVGERLEDLRPFHAEEF 384 >gi|212711016|ref|ZP_03319144.1| hypothetical protein PROVALCAL_02085 [Providencia alcalifaciens DSM 30120] gi|212686184|gb|EEB45712.1| hypothetical protein PROVALCAL_02085 [Providencia alcalifaciens DSM 30120] Length = 601 Score = 255 bits (652), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 128/295 (43%), Positives = 189/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T L G + +++DD + +ELE+ L+ +D+GV +KI++ L Sbjct: 299 FFSRLKKGLLKTRQNLGSGFLGLFKGKKIDDDLFDELEEQLLIADVGVETTRKIIDNLTH 358 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K++ LY + E + +L + KP + +P+VIL+VGVNGVGKTT IGKL Sbjct: 359 HASRKELKDAEALYGKLREEMSDILSTVDKPLVIE-GKKPYVILMVGVNGVGKTTTIGKL 417 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D A++ Y+A + AQA Sbjct: 418 ARQYQSEGKSVMLAAGDTFRAAAVEQLQVWGERNKISVVAQHTGADPASVIYDAIQSAQA 477 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K DVLI DTAGRL N + LM + K++RV+K+LD APH ++ LDA+TGQNA+ Q ++ Sbjct: 478 KGADVLIADTAGRLQNKAHLMEELKKIVRVMKKLDESAPHEIMLTLDASTGQNAVSQAKI 537 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I IP+ ++G+GEGI DL PF A DF Sbjct: 538 FNDAVGLTGITLTKLDGTAKGGVIFSIADQFGIPIRYIGIGEGIEDLRPFKADDF 592 >gi|254490588|ref|ZP_05103774.1| signal recognition particle-docking protein FtsY [Methylophaga thiooxidans DMS010] gi|224464332|gb|EEF80595.1| signal recognition particle-docking protein FtsY [Methylophaga thiooxydans DMS010] Length = 354 Score = 255 bits (651), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 131/309 (42%), Positives = 197/309 (63%), Gaps = 2/309 (0%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIV 67 E + +L +G + TS KL EG +I R+ +DD + EELE LI +D+G+ +I+ Sbjct: 45 EKTGFFGRLKQGLSRTSNKLTEGFASLILGRKTIDDDLLEELETQLITADLGIDATNRII 104 Query: 68 EELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 +L + K +S L+D + + + +L P S+P P+VIL+VG+NGVGKTT Sbjct: 105 SDLTQRVARKQLSDVEALFDAMRDDMVTILQPSSQPLTVPDKPGPYVILMVGINGVGKTT 164 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+K+ G VMLAAGDTFR+AA++QL++W +R S + G+D+A++ ++A Sbjct: 165 TIGKLAKQFQQQGKSVMLAAGDTFRAAAVEQLQVWGERNSIPVIAQPKGADSASVIFDAL 224 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+++ D+LI DTAGRLH S LM + K+ RV+ ++D APH ++ VLDA TGQNAL Sbjct: 225 QAAKSRGADILIADTAGRLHTQSNLMEELKKVKRVMGKIDETAPHEIMLVLDAGTGQNAL 284 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +Q + F+ G TG+ +TK+DGTA+GG + I +P+ ++GVGE I+DL PF A DF Sbjct: 285 QQAQQFNDAVGVTGITLTKLDGTAKGGIIFAIADKTGLPIRYIGVGEKIDDLRPFDAADF 344 Query: 307 SAVITGCLD 315 + G D Sbjct: 345 VDALLGRED 353 >gi|269140670|ref|YP_003297371.1| cell division protein [Edwardsiella tarda EIB202] gi|267986331|gb|ACY86160.1| cell division protein [Edwardsiella tarda EIB202] gi|304560455|gb|ADM43119.1| Signal recognition particle receptor protein FtsY [Edwardsiella tarda FL6-60] Length = 589 Score = 255 bits (651), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 129/300 (43%), Positives = 192/300 (64%), Gaps = 12/300 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + +ELE+ LI +D+GV +KI++ L Sbjct: 287 FFARLKRSLVKTRQNLGSGFFGLFRGKKIDDDLFDELEEQLIVADVGVETTRKIIDSLTA 346 Query: 73 KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTT 126 K++ LY ++ E++ K+ PL D S H+P VIL+VGVNGVGKTT Sbjct: 347 HASRKELKDAEALYGKLKEEMGEILQKVDAPL------DISGHQPFVILMVGVNGVGKTT 400 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+++ G VMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A Sbjct: 401 TIGKLARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAI 460 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+A+KVDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Sbjct: 461 QAAKARKVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEQAPHEVMLTIDASTGQNAV 520 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q +F+ G TG+ +TK+DGTA+GG + + IP+ ++GVGEGI DL PF A DF Sbjct: 521 SQARLFNEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGEGIEDLRPFKADDF 580 >gi|254461979|ref|ZP_05075395.1| signal recognition particle-docking protein FtsY [Rhodobacterales bacterium HTCC2083] gi|206678568|gb|EDZ43055.1| signal recognition particle-docking protein FtsY [Rhodobacteraceae bacterium HTCC2083] Length = 399 Score = 254 bits (650), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 124/277 (44%), Positives = 189/277 (68%), Gaps = 1/277 (0%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95 ++ R LDD + E+LE+LLI SD+GV A ++ + R + +S + + ++ I ++ Sbjct: 121 VTRRVLDDDMLEQLEELLISSDMGVDTALRVSANMAEGRMGRKLSTEEIKDLLAAEIARI 180 Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 + P++KP + +P V+LVVGVNG GKTT IGKL+ + +G V++AAGDTFR+AA+ Sbjct: 181 MEPVAKPLPI-YPKKPQVVLVVGVNGSGKTTTIGKLASQFKASGKNVVIAAGDTFRAAAV 239 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 +QL++W R + + GSD A+LA++A QA+ D+L+IDTAGRL N + LM + Sbjct: 240 EQLQVWGTRAGVPVLTAPEGSDPASLAFDAMAQAEEDGADLLMIDTAGRLQNRADLMEEL 299 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 K++RV+++ DP APH+ L VLDATTGQNAL QVE F +A +GL+MTK+DGTA+GG L Sbjct: 300 SKIVRVIQKKDPSAPHNTLLVLDATTGQNALNQVETFQKLADVSGLVMTKLDGTAKGGVL 359 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + + +P++ +GVGE I+DL+ F +DF+ +TG Sbjct: 360 VALADKFGLPIHAIGVGEQIDDLDAFDPEDFANALTG 396 >gi|77359320|ref|YP_338895.1| cell division transporter substrate-binding protein [Pseudoalteromonas haloplanktis TAC125] gi|76874231|emb|CAI85452.1| Cell division transporter substrate-binding protein FtsY [Pseudoalteromonas haloplanktis TAC125] Length = 651 Score = 254 bits (650), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + + G I S +++DD + EELE L+ +D+GV K+++ L Sbjct: 345 FFSRLKKGLLKTRVNIGSGFASIFSGKKIDDDLFEELETQLLTADLGVDTTMKLIDRLTD 404 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY++ + + ML +P +P VIL+VGVNGVGKTT IGKL Sbjct: 405 AANRKQLKDGDALYELMKQEMAVMLKTAEQPLVIPADKKPFVILMVGVNGVGKTTTIGKL 464 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +K+ G VMLAAGDTFR+AA++QL++W +R S + G+D+A++ ++AF+ A+A Sbjct: 465 AKQFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNSIPVIAQHTGADSASVIFDAFQAAKA 524 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N LM + K+ RV+K++DP APH V+ +DA TGQNA+ QV + Sbjct: 525 RNVDVLIADTAGRLQNKDNLMQELEKIARVMKKIDPDAPHEVMLTIDAGTGQNAISQVNL 584 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ ++K+DGTA+GG + + IP+ ++GVGE I+DL F + DF Sbjct: 585 FNQCVGLTGITLSKLDGTAKGGVIFAVADKFNIPIRYIGVGESIDDLRAFKSDDF 639 >gi|169633653|ref|YP_001707389.1| cell division protein [Acinetobacter baumannii SDF] gi|169152445|emb|CAP01410.1| cell division protein [Acinetobacter baumannii] Length = 368 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 133/300 (44%), Positives = 194/300 (64%), Gaps = 2/300 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + ++ +G + T +G+ +I I + +DD + EE+E L+ +DIGV + I+ L Sbjct: 64 FFGRMKEGLSKTRRNFTDGMVNILIGGKEIDDELLEEVEGQLLVADIGVDATKTIITNLT 123 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + D+ LY + E + +L P KP + D + P+VIL+VGVNGVGKTT IGK Sbjct: 124 ERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGKTTTIGK 183 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K++ G KVMLAAGDTFR+AA +QL+IW +R V G+D+A++ ++A + A+ Sbjct: 184 LAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDASESAR 243 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 AK +DVLI DTAGRLHN S LM + K+ RV++++D APH ++ V+DA TGQNA+ QV+ Sbjct: 244 AKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQ 303 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TG+ +TK+DGTA+GG L I +P+ F+GVGE I+DL PF AK F A + Sbjct: 304 EFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAAL 363 >gi|253991203|ref|YP_003042559.1| cell division protein ftsy [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782653|emb|CAQ85817.1| cell division protein ftsy [Photorhabdus asymbiotica] Length = 494 Score = 254 bits (649), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 126/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + +ELE+ L+ +D+GV +KI+ L Sbjct: 192 FFTRLKRSLVKTRQNLGSGFLSLFRGKKIDDDLFDELEEQLLIADVGVDTTRKIIGSLTA 251 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K++ LY + E + +L+ + KP + + P+VIL+VGVNGVGKTT IGKL Sbjct: 252 HASRKELKDAEALYAKLKEEMSGILVKVDKPLDIE-GKTPYVILMVGVNGVGKTTTIGKL 310 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D A++ ++A + A+A Sbjct: 311 ARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQHTGADPASVIFDAMQSAKA 370 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K +D+LI DTAGRL N S LM + K++RV+K+LD APH ++ LDA+TGQNA+ Q ++ Sbjct: 371 KGIDILIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEIMLTLDASTGQNAISQAKL 430 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL PF A DF Sbjct: 431 FHEAVGLTGISLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADDF 485 >gi|110679220|ref|YP_682227.1| signal recognition particle-docking protein FtsY [Roseobacter denitrificans OCh 114] gi|109455336|gb|ABG31541.1| signal recognition particle-docking protein FtsY [Roseobacter denitrificans OCh 114] Length = 512 Score = 254 bits (649), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 126/274 (45%), Positives = 189/274 (68%), Gaps = 1/274 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E+LE+LLI +D+GV A ++V + R K +SVQ + ++ I +++ P Sbjct: 236 RTLDDDMLEQLEELLISADMGVDTALRVVANMAEGRVGKKLSVQEIKELLASEIAQIMEP 295 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 ++KP + P V+LVVGVNG GKTT IGKL+ + AG KV++AAGDTFR+AA++QL Sbjct: 296 VAKPLPL-YPRTPQVVLVVGVNGSGKTTTIGKLASQFRAAGKKVVIAAGDTFRAAAVEQL 354 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W DR + + GSD A+LA++A +AQ D+L+IDTAGRL N + LM + K+ Sbjct: 355 QVWGDRAGVPVLTAPEGSDPASLAFDAMLKAQRDGADLLLIDTAGRLQNRTDLMEELAKI 414 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+++ D APH+ L VLDATTGQNAL QV++F ++ +GL+MTK+DGTA+GG L+ + Sbjct: 415 VRVIRKNDETAPHNTLLVLDATTGQNALNQVKVFSDISDVSGLVMTKLDGTAKGGVLVAL 474 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +P++ +GVGE I+DL+ F +DF+ + G Sbjct: 475 ADKFGLPIHAIGVGEQIDDLDAFDPEDFADALMG 508 >gi|269103876|ref|ZP_06156573.1| signal recognition particle receptor protein FtsY [Photobacterium damselae subsp. damselae CIP 102761] gi|268163774|gb|EEZ42270.1| signal recognition particle receptor protein FtsY [Photobacterium damselae subsp. damselae CIP 102761] Length = 462 Score = 254 bits (648), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 129/294 (43%), Positives = 196/294 (66%), Gaps = 8/294 (2%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 +RK + F S+ L +G +++DD + EELE+ L+ +D+G+ KI+E L K Sbjct: 167 LRKTKENFGSSFFSLFKG-------KKIDDELFEELEEQLLIADVGMDTTVKIIENLTEK 219 Query: 74 RYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 K++ LY + + + +ML + +PF D S +P+VIL+VGVNGVGKTT IGKL+ Sbjct: 220 ASRKELKDGEALYGLLKDELAEMLAKVEQPFEIDTSKKPYVILMVGVNGVGKTTTIGKLA 279 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 KK G VMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + A+AK Sbjct: 280 KKFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIFDAIESAKAK 339 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 +DV+I DTAGRL N + LM + K++RV+K++DP APH ++ LDA TGQNA+ Q ++F Sbjct: 340 NIDVIIADTAGRLQNKANLMEELRKIVRVMKKIDPDAPHEIMLTLDAGTGQNAISQAKLF 399 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 VA +G+ +TK+DGTA+GG + I IP+ ++G+GEGI+DL PF A +F Sbjct: 400 SEVAPVSGITLTKLDGTAKGGVIFAIADQFHIPIRYIGIGEGIDDLRPFAADEF 453 >gi|292492241|ref|YP_003527680.1| signal recognition particle-docking protein FtsY [Nitrosococcus halophilus Nc4] gi|291580836|gb|ADE15293.1| signal recognition particle-docking protein FtsY [Nitrosococcus halophilus Nc4] Length = 356 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 128/301 (42%), Positives = 193/301 (64%), Gaps = 6/301 (1%) Query: 14 IRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-- 70 ++L T L GI D+ + + +DD + EE+E L+ +D+GV Q I++ L Sbjct: 45 FKRLRNRLGRTRGNLTGGIADLMLGKKNIDDELLEEIETQLLVADVGVEATQSIIDNLTV 104 Query: 71 -LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 ++++ KD + ++ + E + ++L+P S P +P VIL+VGVNGVGKTT IG Sbjct: 105 RVSRKQLKDPAA--LMAALRENMQELLLPSSHPLVIPEGIKPFVILMVGVNGVGKTTTIG 162 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+KK G VMLAAGDTFR+AA++QL+ W +R + G+D+A++ ++A + A Sbjct: 163 KLAKKFQAEGRSVMLAAGDTFRAAAVEQLQAWGERNQVPVIAQRSGADSASVIFDALQSA 222 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 QA+ +DVLI DTAGRLH + LM + K+ RV+ ++DP APH ++ +DA TGQNAL Q Sbjct: 223 QARGIDVLIADTAGRLHTQANLMEELKKVKRVMGKVDPQAPHEIMLTVDAGTGQNALNQA 282 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + FH G TG+ +TK+DGTA+GG + I +P+ F+GVGEGI+DL PF A++F A Sbjct: 283 KQFHEAVGLTGITLTKLDGTAKGGVIFAIAKKMALPIRFIGVGEGIDDLRPFDAEEFVAA 342 Query: 310 I 310 + Sbjct: 343 L 343 >gi|183598034|ref|ZP_02959527.1| hypothetical protein PROSTU_01390 [Providencia stuartii ATCC 25827] gi|188022813|gb|EDU60853.1| hypothetical protein PROSTU_01390 [Providencia stuartii ATCC 25827] Length = 640 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 127/295 (43%), Positives = 191/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T L G + + +++DD + +ELE+ L+ +D+GV +KI++ L Sbjct: 338 FFARLKKGLLKTRQNLGSGFLGLFTGKKIDDDLFDELEEQLLIADVGVDTTRKIIDNLTA 397 Query: 73 KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K++ LY + E + +L + KP + +P+VIL+VGVNGVGKTT IGKL Sbjct: 398 HASRKELKDAEALYSKLREEMSDILAGVDKPLVIE-DKKPYVILMVGVNGVGKTTTIGKL 456 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D A++ ++A + A+A Sbjct: 457 ARQYQSEGKTVMLAAGDTFRAAAVEQLQVWGERNRIPVVAQHTGADPASVIFDAIQSAKA 516 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K VDVLI DTAGRL N + LM + K++RV+K+LD APH ++ LDA+TGQNA+ Q ++ Sbjct: 517 KGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEEAPHEIMLTLDASTGQNAVSQAKL 576 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I IP+ ++G+GEGI DL PF A DF Sbjct: 577 FNDAVGLTGITLTKLDGTAKGGVIFSIADQFGIPIRYIGIGEGIEDLRPFKADDF 631 >gi|329847629|ref|ZP_08262657.1| signal recognition particle-docking protein FtsY [Asticcacaulis biprosthecum C19] gi|328842692|gb|EGF92261.1| signal recognition particle-docking protein FtsY [Asticcacaulis biprosthecum C19] Length = 326 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 137/311 (44%), Positives = 196/311 (63%), Gaps = 19/311 (6%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 W +LT G + TS L E +T + S + L D E LEDLLI SD+G ++ I ++ Sbjct: 21 WFERLTHGLSRTSQTLTEQVTQVFSQKESLSDSDLEALEDLLIESDLGPQISANISAKMA 80 Query: 72 TKRYA--KDVSVQR-----VLYDVSELIHK--MLMPLSKPFNWDFSHRPHVILVVGVNGV 122 +++ KD + R L D EL++ PL P +P+++L VGVNG Sbjct: 81 QAKFSSSKDSTAVREALASALAD--ELVNHEGTFEPLGGP-------KPYIVLFVGVNGS 131 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT +GK++ ++ G KV++ AGDTFR+AA++QLK+W++R ADF+ + G+DAA LA Sbjct: 132 GKTTTLGKIAASLTAKGAKVLIVAGDTFRAAAVEQLKVWSERAKADFMGRKTGADAAGLA 191 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y++ +A+ + DV++IDTAGRL N LM + K++RV+KR+DP APH L VLDAT G Sbjct: 192 YDSVVKAKEEGYDVVLIDTAGRLQNKQALMDELLKIVRVIKRVDPDAPHETLLVLDATVG 251 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 +NAL Q ++F A +GL+MTK+DGTARGG LIPI P+ +GVGE I DL F Sbjct: 252 RNALSQEQIFGRQAFVSGLVMTKLDGTARGGILIPIAKASDAPIKLIGVGEDIEDLHAFK 311 Query: 303 AKDFSAVITGC 313 A+DF+ + G Sbjct: 312 ARDFARSMVGL 322 >gi|325275629|ref|ZP_08141529.1| signal recognition particle-docking protein FtsY [Pseudomonas sp. TJI-51] gi|324099236|gb|EGB97182.1| signal recognition particle-docking protein FtsY [Pseudomonas sp. TJI-51] Length = 329 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 129/296 (43%), Positives = 191/296 (64%), Gaps = 2/296 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L +G + TS + EG+ + ++ +DD + +E+E L+ +D+GV IV+ L Sbjct: 25 FFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSTIVQNLT 84 Query: 72 TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K K ++ LY + E + +L P+ +P ++P+VILVVGVNG GKTT IGK Sbjct: 85 QKVARKQLADADALYKSLQEELAALLRPVEQPLKVQAQNKPYVILVVGVNGAGKTTTIGK 144 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + A+ Sbjct: 145 LAKKLQQEGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFDAVQAAK 204 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ VDVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q + Sbjct: 205 ARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDAEAPHEVLLVLDAGTGQNAISQAK 264 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ TGL +TK+DGTA+GG + + K+P+ F+GVGEGI+DL F A+ F Sbjct: 265 YFNQSVELTGLALTKLDGTAKGGVIFALAKQFKLPIRFIGVGEGIDDLRTFEAEPF 320 >gi|313501087|gb|ADR62453.1| Signal recognition particle-docking protein FtsY [Pseudomonas putida BIRD-1] Length = 372 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 130/296 (43%), Positives = 191/296 (64%), Gaps = 2/296 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L +G + TS + EG+ + ++ +DD + +E+E L+ +D+GV IV+ L Sbjct: 68 FFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSAIVQNLT 127 Query: 72 TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K K ++ LY + E + +L P+ +P N ++P+VILVVGVNG GKTT IGK Sbjct: 128 QKVARKQLADADALYKSLQEELAALLRPVEQPLNVQAQNKPYVILVVGVNGAGKTTTIGK 187 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + A+ Sbjct: 188 LAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFDAVQAAK 247 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ VDVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q + Sbjct: 248 ARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDAEAPHEVLLVLDAGTGQNAISQAK 307 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ TGL +TK+DGTA+GG + + IP+ F+GVGEGI+DL F A+ F Sbjct: 308 YFNQSVELTGLALTKLDGTAKGGVIFALAKQFNIPIRFIGVGEGIDDLRTFEAEPF 363 >gi|114571392|ref|YP_758072.1| signal recognition particle-docking protein FtsY [Maricaulis maris MCS10] gi|114341854|gb|ABI67134.1| signal recognition particle-docking protein FtsY [Maricaulis maris MCS10] Length = 309 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 129/301 (42%), Positives = 197/301 (65%), Gaps = 1/301 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L +G +S KL + ++ I + R+LD EELED+LI +D+G A A ++ E L Sbjct: 8 FFSRLAQGLKRSSSKLGDSVSAIFTKRKLDREALEELEDVLIAADLGAAAAMQVTERLAK 67 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 R+ K+VS + V ++E++ + L PL + + RP V+L VGVNG GKTT +GK++ Sbjct: 68 DRFDKEVSDEEVREALAEVVAETLTPLEQGLDLS-GARPQVVLFVGVNGSGKTTTLGKIA 126 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 K+ G +LAAGDTFR+AAI+Q+ +W +R + + EIG+DAA LA++A QA Sbjct: 127 VKLKREGRNPILAAGDTFRAAAIEQVSVWGERAKSPVIKREIGADAAGLAFDAIDQADRD 186 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 DV++IDTAGRL N + LM + K++RV+K+ P APH V+ VLD T G NA+ Q + F Sbjct: 187 GHDVVLIDTAGRLQNKAELMDELRKVVRVIKKRMPDAPHHVVLVLDGTVGSNAVSQAQAF 246 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + TG++MTK+DGTA+GG L+ + ++P++++G+GEG DL+PF A+DFS + G Sbjct: 247 LEASEVTGVVMTKLDGTAKGGALVQVAEKFQLPIHYIGIGEGEEDLQPFSARDFSRALAG 306 Query: 313 C 313 Sbjct: 307 L 307 >gi|260427997|ref|ZP_05781976.1| cell division protein FtsY [Citreicella sp. SE45] gi|260422489|gb|EEX15740.1| cell division protein FtsY [Citreicella sp. SE45] Length = 441 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 131/279 (46%), Positives = 193/279 (69%), Gaps = 2/279 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E LE+LLI +D+GV A ++ + R+ K VS Q + ++ + +++ P Sbjct: 165 RVLDDEMLESLEELLIAADMGVDTALRVSANIAEGRFGKRVSTQEIKQALAGEVARIMEP 224 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +++P + +P V+LVVGVNG GKTT IGKL+ + AG V++AAGDTFR+AA++QL Sbjct: 225 VARPLPL-YPRKPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGDTFRAAAVEQL 283 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W R + + GSD A+LA++A +AQA+ D+L+IDTAGRL N LM + K+ Sbjct: 284 QVWGQRAGVPVLTAPEGSDPASLAFDAMSKAQAEGADLLMIDTAGRLQNRQDLMEELAKI 343 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+++ DP APH+ L VLDATTGQNAL QVE+F VA +GL+MTK+DGTA+GG L+ + Sbjct: 344 VRVIRKKDPDAPHNTLLVLDATTGQNALNQVEIFRQVADVSGLVMTKLDGTAKGGVLVAL 403 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317 +P++ +GVGE I+DL PF ++F+A +TG LD G Sbjct: 404 ADRFGLPIHAIGVGEQIDDLAPFDPEEFAAALTG-LDNG 441 >gi|163746083|ref|ZP_02153442.1| signal recognition particle-docking protein FtsY [Oceanibulbus indolifex HEL-45] gi|161380828|gb|EDQ05238.1| signal recognition particle-docking protein FtsY [Oceanibulbus indolifex HEL-45] Length = 461 Score = 253 bits (646), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 123/275 (44%), Positives = 189/275 (68%), Gaps = 1/275 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E+LE+LLI +D+GV A ++ + R+ K +SV + ++ + +++ P Sbjct: 186 RTLDDDMLEQLEELLISADMGVDTALRVTANMAEGRFGKKLSVGEIKQLLATEVSRIMEP 245 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +++P +S P V+LVVGVNG GKTT IGKL+ + AG KV++AAGDTFR+AA++QL Sbjct: 246 VARPLPI-YSKTPQVVLVVGVNGSGKTTTIGKLASQFRAAGKKVVIAAGDTFRAAAVEQL 304 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W +R + + GSD A+LA++A +AQ + D+L+IDTAGRL N LM + K+ Sbjct: 305 QVWGERAGVPVLTAAHGSDPASLAFDAMGRAQEEGADLLLIDTAGRLQNRGDLMEELAKI 364 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+++ D APH+ L VLDATTGQNAL QV++F ++ +GL+MTK+DGTA+GG L+ + Sbjct: 365 VRVIRKKDETAPHNTLLVLDATTGQNALNQVKVFQEISDVSGLVMTKLDGTAKGGVLVAL 424 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 +P++ +GVGE I+DL PF +F+A + G Sbjct: 425 ADRFGLPIHAVGVGEQIDDLSPFDPDEFAAALVGI 459 >gi|291279724|ref|YP_003496559.1| signal recognition particle receptor FtsY [Deferribacter desulfuricans SSM1] gi|290754426|dbj|BAI80803.1| signal recognition particle receptor FtsY [Deferribacter desulfuricans SSM1] Length = 388 Score = 253 bits (645), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 142/300 (47%), Positives = 201/300 (67%), Gaps = 12/300 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 ++++L G + TS KL GI I + + +D+ + EELE+L + SDIG+ KI++ + Sbjct: 86 FLKRLRNGLSKTSNKLVGGIETIFLGKKEIDEELLEELEELFVTSDIGINTTLKIIDAV- 144 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-----HRPHVILVVGVNGVGKTT 126 +D ++VL + +L + + + + N D S +P+VILVVGVNGVGKTT Sbjct: 145 -----RDEVSRKVLKNPEDLKNSIKNKIFEILNIDNSLKQVDEKPYVILVVGVNGVGKTT 199 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 I K++K D GLK MLAAGDTFR+AAIDQL++WADR V + GSD AA+ Y+A Sbjct: 200 TIAKIAKMFKDNGLKTMLAAGDTFRAAAIDQLQVWADRVDVPIVKQQEGSDPAAVIYDAV 259 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A+AK DVLI DTAGRLH LM + K++RV+K+ P+APH +L VLDAT+GQNA+ Sbjct: 260 VSAKAKGYDVLIADTAGRLHTKYNLMNELKKIVRVVKKEMPNAPHEILLVLDATSGQNAI 319 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++F+ G TG+++TK+DGTA+GG ++ IV KIPV F+G GEG++DL+PF AK F Sbjct: 320 NQAKIFNEAVGVTGIVLTKLDGTAKGGVIVGIVDELKIPVKFIGFGEGMDDLKPFDAKTF 379 >gi|302381440|ref|YP_003817263.1| signal recognition particle-docking protein FtsY [Brevundimonas subvibrioides ATCC 15264] gi|302192068|gb|ADK99639.1| signal recognition particle-docking protein FtsY [Brevundimonas subvibrioides ATCC 15264] Length = 312 Score = 252 bits (644), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 130/304 (42%), Positives = 193/304 (63%), Gaps = 1/304 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W ++L+ G A +S ++ E + L + + LE+ L+ SD+G A +IV Sbjct: 9 WFQRLSAGLARSSQQMTETVVGTFVKEPLSEAALDRLEEHLLESDLGPAATDRIVARFRE 68 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKL 131 R+ K + V ++E + L+P F+ +P+V+L VGVNG GKTT +GK+ Sbjct: 69 LRFGKVSDEREVKEALAEAVAAELLPRQATFDPLSEGIKPYVVLFVGVNGSGKTTTLGKI 128 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + ++ G +VM+ AGDTFR+AA +QLK+WA+R ADF G+D A LA++A+ +A+A Sbjct: 129 AADLTGKGARVMIVAGDTFRAAAREQLKVWAERAGADFESRRDGADPAGLAFDAYTKARA 188 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + DV++IDTAGRL N S LM + K++RVLK++DP APH L VLDAT G+NAL Q ++ Sbjct: 189 ENYDVILIDTAGRLQNKSALMDELLKIVRVLKKIDPDAPHETLLVLDATVGRNALAQEQI 248 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F A +GL+MTK+DGTARGG L+P+ P+ +GVGEGI+DL+PF A+ F+ + Sbjct: 249 FGRTAFVSGLVMTKLDGTARGGVLVPVAQASDAPIKLIGVGEGIDDLQPFDARAFARSLV 308 Query: 312 GCLD 315 G D Sbjct: 309 GLED 312 >gi|262375215|ref|ZP_06068448.1| signal recognition particle-docking protein FtsY [Acinetobacter lwoffii SH145] gi|262309469|gb|EEY90599.1| signal recognition particle-docking protein FtsY [Acinetobacter lwoffii SH145] Length = 367 Score = 252 bits (644), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 139/300 (46%), Positives = 195/300 (65%), Gaps = 2/300 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + ++ G T L +G+ +I I + +DD + EE+E+ L+ +DIGV + I+ L Sbjct: 63 FFSRMKVGLTKTRKNLADGMVNILIGGKEIDDELLEEVEEQLLVADIGVEATKTIIANLT 122 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + D+ LY + E + +L P KP + D + P+VILVVGVNGVGKTT IGK Sbjct: 123 ERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILVVGVNGVGKTTTIGK 182 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K++ G VMLAAGDTFR+AA +QL+IW +R + V G+D+A++ ++AF+ A+ Sbjct: 183 LAKRLQGEGKTVMLAAGDTFRAAATEQLQIWGERNNIAVVAQGHGADSASVIFDAFESAR 242 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 AK VDVLI DTAGRLHN LM + K+ RV++++D APH V+ V+DA TGQNA+ QVE Sbjct: 243 AKGVDVLIADTAGRLHNKGHLMQELTKVKRVMQKIDATAPHEVMLVVDAGTGQNAINQVE 302 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 MF G TGL +TK+DGTA+GG L I +P+ F+GVGE I+DL PF AK F A + Sbjct: 303 MFDEAVGLTGLTITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAAL 362 >gi|26991787|ref|NP_747212.1| signal recognition particle-docking protein FtsY [Pseudomonas putida KT2440] gi|24986898|gb|AAN70676.1|AE016711_4 signal recognition particle receptor FtsY [Pseudomonas putida KT2440] Length = 494 Score = 252 bits (644), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 130/296 (43%), Positives = 191/296 (64%), Gaps = 2/296 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L +G + TS + EG+ + ++ +DD + +E+E L+ +D+GV IV+ L Sbjct: 190 FFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSAIVQNLT 249 Query: 72 TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K K ++ LY + E + +L P+ +P N ++P+VILVVGVNG GKTT IGK Sbjct: 250 QKVARKQLADADALYKSLQEELAALLRPVEQPLNVQAQNKPYVILVVGVNGAGKTTTIGK 309 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + A+ Sbjct: 310 LAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFDAVQAAK 369 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ VDVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q + Sbjct: 370 ARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDVEAPHEVLLVLDAGTGQNAISQAK 429 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ TGL +TK+DGTA+GG + + IP+ F+GVGEGI+DL F A+ F Sbjct: 430 YFNQSVELTGLALTKLDGTAKGGVIFALAKQFNIPIRFIGVGEGIDDLRTFEAEPF 485 >gi|226329396|ref|ZP_03804914.1| hypothetical protein PROPEN_03301 [Proteus penneri ATCC 35198] gi|225202582|gb|EEG84936.1| hypothetical protein PROPEN_03301 [Proteus penneri ATCC 35198] Length = 541 Score = 252 bits (644), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 134/295 (45%), Positives = 190/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T L G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 239 FFSRLKKGLLKTRQNLGSGFIGLFRGKKIDDELFEELEEQLLIADVGMETTTKIITSLTK 298 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 KD+ LY + E + ++L + KP N + +P VIL+VGVNGVGKTT IGKL Sbjct: 299 HATHKDLKDAEALYGKLREEMGEILTKVDKPLNIE-GKKPFVILMVGVNGVGKTTTIGKL 357 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R + V G+D A++ ++A + AQA Sbjct: 358 ARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQHTGADPASVIFDAIQSAQA 417 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 418 KGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTLDASTGQNAVSQAKL 477 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TGL +TK+DGTA+GG + I IP+ ++GVGEGI DL PF A DF Sbjct: 478 FNETVGLTGLTLTKLDGTAKGGVIFSIADQFSIPIRYIGVGEGIEDLRPFKADDF 532 >gi|220936146|ref|YP_002515045.1| signal recognition particle-docking protein FtsY [Thioalkalivibrio sp. HL-EbGR7] gi|219997456|gb|ACL74058.1| signal recognition particle-docking protein FtsY [Thioalkalivibrio sp. HL-EbGR7] Length = 329 Score = 252 bits (644), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 135/301 (44%), Positives = 198/301 (65%), Gaps = 2/301 (0%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKI 66 ++S +L KG + T L EG+ ++ R+ +DD + EELE L+ +D+GV Q+I Sbjct: 19 AQSEGLFSRLRKGLSKTGQALTEGMATLVMGRKAIDDELLEELETRLLMADVGVEATQRI 78 Query: 67 VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 ++ L + K+++ L+ + E + ++L+P++ P D S +P VILVVG+NG GKT Sbjct: 79 LDGLTRRVARKELTDADALFKALHEAMTEILVPVAHPLQIDASKKPFVILVVGINGAGKT 138 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K++ + G VMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A Sbjct: 139 TTIGKLAKRLQNEGRSVMLAAGDTFRAAAVEQLQVWGERNRIPVITQGKGADSASVIYDA 198 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + A+A+ VDVLI DTAGRLH + LM + K+ RV++RLDP APH L V+DA TGQNA Sbjct: 199 VQAAKARGVDVLIADTAGRLHTQTNLMEEMKKVRRVIQRLDPDAPHETLLVVDAGTGQNA 258 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L Q FH TGL +TK+DGTA+GG + + IP+ F+GVGEGI+DL F A D Sbjct: 259 LNQAREFHQAVNLTGLAVTKLDGTAKGGIVFAMAERMGIPIRFIGVGEGIDDLRTFRADD 318 Query: 306 F 306 F Sbjct: 319 F 319 >gi|88858436|ref|ZP_01133078.1| Cell division transporter substrate-binding protein FtsY [Pseudoalteromonas tunicata D2] gi|88820053|gb|EAR29866.1| Cell division transporter substrate-binding protein FtsY [Pseudoalteromonas tunicata D2] Length = 565 Score = 252 bits (644), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 126/296 (42%), Positives = 189/296 (63%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L K T + G +I S +++DD + EELE L+ +D+GV K++ L Sbjct: 260 SFFSRLKKSLIKTKQSIGSGFINIFSGKKIDDELFEELETQLLTADLGVDTTLKLIARLT 319 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + LYD+ + + +ML + + + + P VIL+VGVNGVGKTT IGK Sbjct: 320 EAADRKQLKDGDALYDLLKQEMAQMLKSAEQALDTEKATGPFVILMVGVNGVGKTTTIGK 379 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G VMLAAGDTFR+AA++QL++W R + G+D+A++ ++AF+ A+ Sbjct: 380 LAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVIAQHTGADSASVIFDAFQAAK 439 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+KVD+LI DTAGRL N LM + K+ RV+K+LDP APH V+ +DA TGQNA+ QV+ Sbjct: 440 ARKVDILIADTAGRLQNKDNLMQELEKIARVMKKLDPDAPHEVMLTIDAGTGQNAISQVD 499 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F+ G TG+ +TK+DGTA+GG + + IP+ ++GVGEGI+DL F + +F Sbjct: 500 LFNKAVGLTGISLTKLDGTAKGGVIFAVADKFNIPIRYIGVGEGIDDLRAFKSDEF 555 >gi|239994821|ref|ZP_04715345.1| signal recognition particle GTPase [Alteromonas macleodii ATCC 27126] Length = 382 Score = 251 bits (642), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 128/313 (40%), Positives = 196/313 (62%), Gaps = 6/313 (1%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S +L + + T L GI + + +DD + E+LE L+ +D+G+ QKI++ L Sbjct: 69 SLFARLKESLSRTKENLGSGIVSLFKGKTIDDELYEDLETQLLVADVGMDTTQKIIDHLT 128 Query: 72 TKRYAKDVSVQRVLYDV-----SELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKT 125 KD+ L D+ S ++ ++ PLS+ D S P VIL+VGVNGVGKT Sbjct: 129 DSASRKDLKDAEALLDIMKQQMSGMLSQVNQPLSEVMQAHDSSEGPFVILMVGVNGVGKT 188 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A Sbjct: 189 TTIGKLAKQFQQEGKKVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGADSASVLYDA 248 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + A+++ D+LI DTAGRL N + LM + K++RV+K+++P+APH V+ LDA TGQNA Sbjct: 249 LEAAKSRGTDILIADTAGRLQNKNNLMEELKKVVRVMKKINPNAPHEVMLTLDAGTGQNA 308 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + Q ++F+ G TG+ +TK+DGTA+GG + I KIP+ ++GVGE I+DL F ++ Sbjct: 309 ISQAKLFNEAVGLTGITLTKLDGTAKGGVIFSIADKFKIPIRYIGVGESIDDLRQFDGQE 368 Query: 306 FSAVITGCLDYGE 318 F + +D E Sbjct: 369 FIDALFSEMDTPE 381 >gi|149378431|ref|ZP_01896125.1| signal recognition particle-docking protein FtsY [Marinobacter algicola DG893] gi|149357281|gb|EDM45809.1| signal recognition particle-docking protein FtsY [Marinobacter algicola DG893] Length = 400 Score = 251 bits (641), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 129/302 (42%), Positives = 197/302 (65%), Gaps = 8/302 (2%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 +S ++ KG T L G D+ S +++D+ + EE+E L+ +D+GV +I+E Sbjct: 91 QVSVFERIRKGLGKTRANLTGGFADLFSIGKKVDEDLLEEIETTLLMADVGVTATSEIIE 150 Query: 69 EL---LTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 L L + KD ++++ L D +H +L ++KP D S +P+VIL+VGVNGVGK Sbjct: 151 SLTDKLERNQLKDGEALRKALRDE---LHGLLADVTKPLEIDASKKPYVILMVGVNGVGK 207 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+K G VMLAAGDTFR+AA++QL++W +R + V G+D+A++ ++ Sbjct: 208 TTTIGKLTKLFQRDGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVIFD 267 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + AQ++ VDV+I DTAGRL N LM+ + K++RV+K+LD APH V+ VLDA TGQN Sbjct: 268 AVQSAQSRGVDVVIADTAGRLQNKDNLMSELEKVVRVMKKLDESAPHEVMLVLDAGTGQN 327 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 AL Q ++F G +G+ +TK+DGTA+GG + I ++P+ ++GVGE ++DL F A+ Sbjct: 328 ALSQAQVFQQAVGVSGITLTKLDGTAKGGIVFAIARQLQLPIRYIGVGEQVDDLRSFDAR 387 Query: 305 DF 306 F Sbjct: 388 TF 389 >gi|114049331|ref|YP_739881.1| signal recognition particle-docking protein FtsY [Shewanella sp. MR-7] gi|113890773|gb|ABI44824.1| signal recognition particle-docking protein FtsY [Shewanella sp. MR-7] Length = 584 Score = 251 bits (641), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 128/296 (43%), Positives = 196/296 (66%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L +G TS + G + +++DD + EELE+ L+ +D+GV ++++ L Sbjct: 277 SFFARLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTSRLIQSLT 336 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + LYD+ + + K L P++ P + ++ P+VIL+VGVNGVGKTT IGK Sbjct: 337 EHASRKQLKDAEALYDLLRDEMQKTLDPVAIPLVPENANGPYVILMVGVNGVGKTTTIGK 396 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G VMLAAGDTFR+AA++QL++W R + V G+D+A++ ++A + A+ Sbjct: 397 LAKQYQRQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASVLFDALQAAK 456 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+K+DVLI DTAGRL N S LM + K++RV+K+LDP APH V+ LDA+TGQNA+ Q + Sbjct: 457 ARKIDVLIADTAGRLQNKSHLMEELKKVVRVMKKLDPEAPHEVMLTLDASTGQNAISQAQ 516 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F G TG+ ++K+DGTA+GG + I KIP+ ++GVGE I+DL F +K+F Sbjct: 517 LFQEAVGVTGMTISKLDGTAKGGVVFAIADKFKIPLRYIGVGEQIDDLRTFNSKEF 572 >gi|83944907|ref|ZP_00957273.1| probable cell division protein [Oceanicaulis alexandrii HTCC2633] gi|83851689|gb|EAP89544.1| probable cell division protein [Oceanicaulis alexandrii HTCC2633] Length = 437 Score = 251 bits (641), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 128/291 (43%), Positives = 193/291 (66%), Gaps = 1/291 (0%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 E + +L G +S +L +G++ + + R+LD +ELE+LLI +DIG A K+V Sbjct: 132 EKKGFFARLAAGLKKSSSRLSDGLSSLFTQRKLDQEALDELEELLIAADIGAPTAAKVVA 191 Query: 69 ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L R+ KDVS + +++++ + L P +P + P V++ VGVNG GKTT + Sbjct: 192 RLAKDRFDKDVSDLEIREALADVVAETLQPYEQPLDM-TGATPSVVVFVGVNGSGKTTTL 250 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GK++ KM+ G V+ AAGDTFR+AA++QL++W++R A F+ E+G+DAA LAY+A +Q Sbjct: 251 GKIAVKMTREGADVITAAGDTFRAAAVEQLQVWSERAGAKFLSRELGADAAGLAYDAIQQ 310 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 + +K D ++IDTAGRL N + LM + K+IRV++++D APH VL VLD T G NA+ Q Sbjct: 311 GRTEKSDAVLIDTAGRLQNKAELMDELRKIIRVIRKIDDTAPHHVLLVLDGTVGSNAISQ 370 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 E F A TG+IMTK+DGTA+GG L+ + K+P++F+GVGEG DL+ Sbjct: 371 AEAFMETAHVTGVIMTKLDGTAKGGALVQVAERFKLPIHFIGVGEGEADLQ 421 >gi|50085394|ref|YP_046904.1| cell division protein [Acinetobacter sp. ADP1] gi|49531370|emb|CAG69082.1| cell division protein [Acinetobacter sp. ADP1] Length = 373 Score = 251 bits (640), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 135/300 (45%), Positives = 197/300 (65%), Gaps = 2/300 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + ++ +G T L +G+ +I I + +DD + EE+E+ L+ +DIGV + I+ L Sbjct: 69 FFSRMKQGLTKTRRNLADGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLT 128 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + D+ LY + E + +L P KP + D + P+VIL+VGVNGVGKTT IGK Sbjct: 129 ERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKTPYVILMVGVNGVGKTTTIGK 188 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K++ G KVMLAAGDTFR+AA +QL+IW +R + V G+D+A++ ++AF+ A+ Sbjct: 189 LAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNNISVVAQGHGADSASVIFDAFESAR 248 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 AK +DVLI DTAGRLHN S LM + K+ RV++++D APH ++ V+DA TGQNA+ QV+ Sbjct: 249 AKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQ 308 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TG+ +TK+DGTA+GG L I +P+ F+GVGE I+DL PF AK F A + Sbjct: 309 EFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAAL 368 >gi|104779581|ref|YP_606079.1| cell division protein FtsY [Pseudomonas entomophila L48] gi|95108568|emb|CAK13262.1| cell division protein FtsY [Pseudomonas entomophila L48] Length = 524 Score = 251 bits (640), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 129/296 (43%), Positives = 191/296 (64%), Gaps = 2/296 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L +G + TS + EG+ + ++ +DD + +E+E L+ +D+GV IV+ L Sbjct: 218 FFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSTIVQNLT 277 Query: 72 TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K K ++ LY + E + +L P+ +P + ++P+VILVVGVNG GKTT IGK Sbjct: 278 QKVARKQLADADALYKSLQEELAALLRPVEQPLKIEAQNKPYVILVVGVNGAGKTTTIGK 337 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + A+ Sbjct: 338 LAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFDAVQAAK 397 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ VDVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q + Sbjct: 398 ARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDAEAPHEVLLVLDAGTGQNAISQAK 457 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ TGL +TK+DGTA+GG + + IP+ F+GVGEGI+DL F A+ F Sbjct: 458 YFNQSVELTGLALTKLDGTAKGGVIFALAKQFNIPIRFIGVGEGIDDLRTFEAEPF 513 >gi|91794852|ref|YP_564503.1| signal recognition particle-docking protein FtsY [Shewanella denitrificans OS217] gi|91716854|gb|ABE56780.1| signal recognition particle-docking protein FtsY [Shewanella denitrificans OS217] Length = 487 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 135/305 (44%), Positives = 195/305 (63%), Gaps = 3/305 (0%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62 QK E L +L +G TS + G + +++DD + EELE+ L+ +D+GV Sbjct: 158 QQKPVKEGL--FARLKRGLMRTSENIGSGFIGLFKGKKIDDDLFEELEEQLLIADVGVET 215 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 K++ +L + + LYD+ + + KML P++ P D S P VIL+VGVNG Sbjct: 216 TTKLIAKLTEHASRRQLKDAEALYDLMRDEMQKMLEPVAIPLVPDNSEGPFVILMVGVNG 275 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT IGKL+K+ G VMLAAGDTFR+AA++QL++W R + V G+D+A++ Sbjct: 276 VGKTTTIGKLAKQYQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASV 335 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++AF+ A+++KVDVLI DTAGRL N S LM + K++RV+K+LD +APH V+ LDA+T Sbjct: 336 LFDAFQAAKSRKVDVLIADTAGRLQNKSHLMEELKKVVRVMKKLDANAPHEVMLTLDAST 395 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q ++F G TG+ +TK+DGTA+GG + I IP+ +GVGE I+DL F Sbjct: 396 GQNAISQAQLFQEAVGVTGITLTKLDGTAKGGVIFAIADKFSIPIRHIGVGEQIDDLRTF 455 Query: 302 VAKDF 306 A DF Sbjct: 456 NAADF 460 >gi|170719541|ref|YP_001747229.1| signal recognition particle-docking protein FtsY [Pseudomonas putida W619] gi|169757544|gb|ACA70860.1| signal recognition particle-docking protein FtsY [Pseudomonas putida W619] Length = 514 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 129/296 (43%), Positives = 190/296 (64%), Gaps = 2/296 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L +G + TS + EG+ + ++ +DD + +E+E L+ +D+GV IV+ L Sbjct: 208 FFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSTIVQNLT 267 Query: 72 TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K K ++ LY + E + +L P+ +P ++P+VILVVGVNG GKTT IGK Sbjct: 268 QKVARKQLADADALYKSLQEELAALLRPVEQPLKIQAQNKPYVILVVGVNGAGKTTTIGK 327 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + A+ Sbjct: 328 LAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFDAVQAAK 387 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ VDVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q + Sbjct: 388 ARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDAEAPHEVLLVLDAGTGQNAISQAK 447 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ TGL +TK+DGTA+GG + + IP+ F+GVGEGI+DL F A+ F Sbjct: 448 YFNQSVELTGLALTKLDGTAKGGVIFALAKQFNIPIRFIGVGEGIDDLRTFEAEPF 503 >gi|326797249|ref|YP_004315069.1| signal recognition particle-docking protein FtsY [Marinomonas mediterranea MMB-1] gi|326548013|gb|ADZ93233.1| signal recognition particle-docking protein FtsY [Marinomonas mediterranea MMB-1] Length = 434 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 136/310 (43%), Positives = 203/310 (65%), Gaps = 8/310 (2%) Query: 3 NQKVASE--SLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIG 59 NQ+V E +LSW ++ G A T L G++ ++ S+++DD + EELE L+ +D+G Sbjct: 119 NQEVPDEKPTLSWRERIQSGLARTRSGLGNGLSSLVLGSKKVDDDLLEELETQLLTADVG 178 Query: 60 VAVAQKIVE---ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116 + Q +++ E L ++ KD + ++ + ++ +L KP + D + P VIL+ Sbjct: 179 IDATQTLIDGLTEKLNRKELKDSNA--LMSSLKADMNDILEISEKPLSLDKADGPFVILM 236 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGKL+KK G VMLAAGDTFR+AA++QL++W DR V G+ Sbjct: 237 VGVNGVGKTTTIGKLAKKYQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNQVPVVAQHTGA 296 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D+A++ Y+A + A+AK VDV+I DTAGRL N + LM+ + K++RV+K+LD APH V+ V Sbjct: 297 DSASVIYDAIESAKAKSVDVVIADTAGRLQNKANLMSELEKVVRVMKKLDVSAPHEVMLV 356 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDA TGQNAL Q ++F G +G+ +TK+DGTA+GG + I +P+ ++GVGE Sbjct: 357 LDAGTGQNALSQAKLFTEAVGVSGITLTKLDGTAKGGIIFAIAKQFGLPIRYIGVGEQAE 416 Query: 297 DLEPFVAKDF 306 DL PFVA++F Sbjct: 417 DLRPFVAQEF 426 >gi|209696302|ref|YP_002264233.1| cell division protein FtsY [Aliivibrio salmonicida LFI1238] gi|208010256|emb|CAQ80587.1| cell division protein FtsY [Aliivibrio salmonicida LFI1238] Length = 410 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 130/296 (43%), Positives = 198/296 (66%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + T + G + S +++D+ + EELE+ L+ +D+G+ KI+ L Sbjct: 106 SFFARLKRSLQRTKENIGAGFFGLFSGKKIDEDLFEELEEQLLIADVGMDTTVKIINSLT 165 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K +D+ LY + E + ++L+ + +P D + PHVIL+VGVNGVGKTT IGK Sbjct: 166 EKASKRDLKDGEALYGLLKEEMAEILVKVEQPLVIDEKNSPHVILMVGVNGVGKTTTIGK 225 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ + G V+LAAGDTFR+AA++QL++W R + G+D+A++ Y+A + A+ Sbjct: 226 LAKQFQNDGKSVILAAGDTFRAAAVEQLQVWGQRNDVPVIAQHTGADSASVIYDAIEAAK 285 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+KVDV+I DTAGRL N S LM + K++RV++++DP APH V+ LDA TGQNA+ Q + Sbjct: 286 ARKVDVVIADTAGRLQNKSNLMEELRKIVRVMQKIDPSAPHEVMLTLDAGTGQNAISQAK 345 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI+DL PFVA+DF Sbjct: 346 LFSDVAPVTGITLTKLDGTAKGGVIFSIADQFQIPIRYIGVGEGIDDLRPFVAQDF 401 >gi|330813436|ref|YP_004357675.1| signal recognition particle receptor protein FtsY (alpha subunit) [Candidatus Pelagibacter sp. IMCC9063] gi|327486531|gb|AEA80936.1| signal recognition particle receptor protein FtsY (alpha subunit) [Candidatus Pelagibacter sp. IMCC9063] Length = 302 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 126/304 (41%), Positives = 191/304 (62%), Gaps = 8/304 (2%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + +++ L +G +S + EG+++I + ++ + EE+ED +I+ D G+ VA K L Sbjct: 1 MGFLKNLKEGLFKSSSNISEGVSNIFLKSKPNEKILEEIEDFMIQCDFGIDVASKFKLIL 60 Query: 71 LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPF---NWDFSHRPHVILVVGVNGVGKTT 126 K+++++ + Y++ SE + K+L PL K DF I+V GVNG GKTT Sbjct: 61 ANKKFSEEELKKENFYNIFSEEVIKILQPLEKKIVNTESDF----KTIIVCGVNGTGKTT 116 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKLSK + KV++ A DTFR+AAIDQLK+W D+ + + + SE+G+D A++A++ Sbjct: 117 TIGKLSKLFKNHNKKVVVGAADTFRAAAIDQLKVWCDKNNTEMIQSEVGADPASVAFKTL 176 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+ D+ IIDTAGRL N LM K++RVLK++DP AP VLDATTGQNA+ Sbjct: 177 EYAKNNNKDLCIIDTAGRLQNKKNLMEEFAKIVRVLKKIDPDAPQETWIVLDATTGQNAI 236 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q+E F + TG++MTK+DGTA+GG L+ I KIP+ +GVGE DL F+A ++ Sbjct: 237 TQIEEFQKITPLTGIVMTKLDGTAKGGILVAIADRFKIPIVAIGVGEKEEDLNQFIASEY 296 Query: 307 SAVI 310 S + Sbjct: 297 SQAL 300 >gi|148978744|ref|ZP_01815124.1| cell division protein FtsY [Vibrionales bacterium SWAT-3] gi|145962165|gb|EDK27449.1| cell division protein FtsY [Vibrionales bacterium SWAT-3] Length = 411 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 129/296 (43%), Positives = 194/296 (65%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ KI+E L Sbjct: 107 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMNTTVKIIENLT 166 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K D+ LY + E + +L + +P D + P+VIL+VGVNGVGKTT IGK Sbjct: 167 EKASRNDLKDGEALYGLLKEEMADILSQVEQPLVVDTTKTPYVILMVGVNGVGKTTTIGK 226 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ + G KVMLAAGDTFR+AA++QL++W R + G+D+A++ Y+A + A+ Sbjct: 227 LAKQFQNEGKKVMLAAGDTFRAAAVEQLQVWGQRNDVPVIAQHTGADSASVIYDAIEAAK 286 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ VDV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 287 ARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 346 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI+DL PF +KDF Sbjct: 347 LFSEVAPVTGITLTKLDGTAKGGVIFSIADQFQIPIRYIGVGEGIDDLRPFESKDF 402 >gi|327482688|gb|AEA85998.1| signal recognition particle receptor FtsY [Pseudomonas stutzeri DSM 4166] Length = 442 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 131/302 (43%), Positives = 192/302 (63%), Gaps = 2/302 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 A L + +L +G + TS + EG+ + + + +DD + +ELE L+ +D+GV Sbjct: 130 APAKLGFFARLRQGLSKTSASIGEGMASLFLGKKAIDDDLLDELETRLLTADVGVEATTA 189 Query: 66 IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 I++ L + K+++ LY + E + +L P+ +P D S RP+VILVVGVNGVGK Sbjct: 190 IMQNLTRRVSRKELADSGALYTALQEELVGLLKPVEQPLAVDASKRPYVILVVGVNGVGK 249 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++ Sbjct: 250 TTTIGKLAKKLQLDGKKVMLAAGDTFRAAAVEQLQVWGERNGIPVIAQHTGADSASVIFD 309 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQN Sbjct: 310 AVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVMGKLDESAPHEVLLVLDAGTGQN 369 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ Q F+ TGL +TK+DGTA+GG + + P+ ++GVGEGI+DL F A Sbjct: 370 AINQTRQFNQAVELTGLALTKLDGTAKGGVIFALAKQFGTPIRYIGVGEGIDDLRTFEAD 429 Query: 305 DF 306 F Sbjct: 430 AF 431 >gi|238789411|ref|ZP_04633197.1| Cell division protein ftsY [Yersinia frederiksenii ATCC 33641] gi|238722554|gb|EEQ14208.1| Cell division protein ftsY [Yersinia frederiksenii ATCC 33641] Length = 520 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 128/296 (43%), Positives = 191/296 (64%), Gaps = 4/296 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + +ELE+ L+ +D+GV +KI+ L Sbjct: 218 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFDELEEQLLIADVGVETTRKIITSLTE 277 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130 K + LY + E + ++L + KP D S + P+VIL+VGVNGVGKTT IGK Sbjct: 278 HASRKQLKDAEALYGKLKEEMSEILSKVDKPL--DVSGKSPYVILMVGVNGVGKTTTIGK 335 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+++ G VMLAAGDTFR+AA++QL++W DR V G+D+A++ ++A + A+ Sbjct: 336 LARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNKIAVVAQHTGADSASVIFDAIQAAK 395 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q + Sbjct: 396 ARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAK 455 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF A DF Sbjct: 456 LFNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFKADDF 511 >gi|303250568|ref|ZP_07336765.1| cell division protein FtsY-like protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252987|ref|ZP_07534874.1| Signal recognition particle-docking protein FtsY [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650556|gb|EFL80715.1| cell division protein FtsY-like protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859516|gb|EFM91542.1| Signal recognition particle-docking protein FtsY [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 581 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 127/295 (43%), Positives = 192/295 (65%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G + S +++DD + EELE+ L+ +D+G+ K++ L Sbjct: 278 FFSRLLKGLVKTKQSIGSGFRNFFSGKKIDDDLFEELEEQLLVADLGMPTTTKVINNLTQ 337 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + +LY +L + ++L P+S+P D S +P+VIL+VGVNGVGKTT IGKL Sbjct: 338 HASKKQLKDADLLYQQLKLELGEVLKPVSQPLEIDTSKKPYVILMVGVNGVGKTTTIGKL 397 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R + V GSD+A++ ++A + A + Sbjct: 398 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAS 457 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K +D+LI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 458 KGIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDAGTGQNAISQAKL 517 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I IP+ F+GVGE I DL PF A++F Sbjct: 518 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEF 572 >gi|126664539|ref|ZP_01735523.1| signal recognition particle-docking protein FtsY [Marinobacter sp. ELB17] gi|126630865|gb|EBA01479.1| signal recognition particle-docking protein FtsY [Marinobacter sp. ELB17] Length = 406 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 125/303 (41%), Positives = 199/303 (65%), Gaps = 10/303 (3%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 +S + ++ +G T G+ D+ S+ +++D + EE+E L+ +D+GV +I+E Sbjct: 102 QISVLERIRRGLGKTRASFTGGLADMFSAGKKIDADLLEEIETTLLMADVGVTATTEIIE 161 Query: 69 ELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 L T++ +D ++++ L D +H +L +SKP D +P+VIL+VGVNGVG Sbjct: 162 SL-TEKLKRDQLKDGEALRQALRD---QLHGLLKDVSKPLVIDAQTKPYVILMVGVNGVG 217 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+KK D G+ V+LAAGDTFR+AA++QL++W DR + G+D+A++ + Sbjct: 218 KTTTIGKLTKKFQDEGMSVLLAAGDTFRAAAMEQLQVWGDRNKVPVIAQHTGADSASVIF 277 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A + A+++ +DV+I DTAGRL N LM+ + K++RV+K+LD APH V+ VLDA TGQ Sbjct: 278 DAIQSAKSRGIDVVIADTAGRLQNKDNLMSELEKVVRVMKKLDTAAPHEVMLVLDAGTGQ 337 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NAL Q ++F G +G+ +TK+DGTA+GG + I ++P+ F+G+GE + DL F A Sbjct: 338 NALNQAQVFQQAVGVSGITLTKLDGTAKGGIVFAIARQLQLPIRFIGIGEQVEDLRSFDA 397 Query: 304 KDF 306 + F Sbjct: 398 RAF 400 >gi|146284304|ref|YP_001174457.1| signal recognition particle receptor FtsY [Pseudomonas stutzeri A1501] gi|145572509|gb|ABP81615.1| signal recognition particle receptor FtsY [Pseudomonas stutzeri A1501] Length = 477 Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 131/302 (43%), Positives = 192/302 (63%), Gaps = 2/302 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 A L + +L +G + TS + EG+ + + + +DD + +ELE L+ +D+GV Sbjct: 165 APAKLGFFARLRQGLSKTSASIGEGMASLFLGKKAIDDDLLDELETRLLTADVGVEATTA 224 Query: 66 IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 I++ L + K+++ LY + E + +L P+ +P D S RP+VILVVGVNGVGK Sbjct: 225 IMQNLTRRVSRKELADSGALYTALQEELVGLLKPVEQPLAIDASKRPYVILVVGVNGVGK 284 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++ Sbjct: 285 TTTIGKLAKKLQLDGKKVMLAAGDTFRAAAVEQLQVWGERNGIPVIAQHTGADSASVIFD 344 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQN Sbjct: 345 AVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVMGKLDESAPHEVLLVLDAGTGQN 404 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ Q F+ TGL +TK+DGTA+GG + + P+ ++GVGEGI+DL F A Sbjct: 405 AINQTRQFNQAVELTGLALTKLDGTAKGGVIFALAKQFGTPIRYIGVGEGIDDLRTFEAD 464 Query: 305 DF 306 F Sbjct: 465 AF 466 >gi|167036150|ref|YP_001671381.1| signal recognition particle-docking protein FtsY [Pseudomonas putida GB-1] gi|166862638|gb|ABZ01046.1| signal recognition particle-docking protein FtsY [Pseudomonas putida GB-1] Length = 510 Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 129/296 (43%), Positives = 190/296 (64%), Gaps = 2/296 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L +G + TS + EG+ + ++ +DD + +E+E L+ +D+GV IV+ L Sbjct: 206 FFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSAIVQNLT 265 Query: 72 TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K K ++ LY + E + +L P+ +P ++P+VILVVGVNG GKTT IGK Sbjct: 266 QKVARKQLADADALYKSLQEELAALLRPVEQPLKVQAQNKPYVILVVGVNGAGKTTTIGK 325 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + A+ Sbjct: 326 LAKKLQLDGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFDAVQAAK 385 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ VDVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q + Sbjct: 386 ARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDAEAPHEVLLVLDAGTGQNAISQAK 445 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ TGL +TK+DGTA+GG + + IP+ F+GVGEGI+DL F A+ F Sbjct: 446 YFNQSVELTGLALTKLDGTAKGGVIFALAKQFNIPIRFIGVGEGIDDLRTFEAEPF 501 >gi|261819462|ref|YP_003257568.1| cell division protein FtsY [Pectobacterium wasabiae WPP163] gi|261603475|gb|ACX85961.1| signal recognition particle-docking protein FtsY [Pectobacterium wasabiae WPP163] Length = 471 Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 125/297 (42%), Positives = 191/297 (64%), Gaps = 6/297 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-- 70 + +L + T L G + +++DD + +ELE+ L+ +D+GV +KI+ L Sbjct: 169 FFARLKRSLVKTRQNLGSGFIGLFRGKKIDDDLFDELEEQLLIADVGVETTRKIISSLTE 228 Query: 71 -LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 +++R KD + + E + ++L + P N + P+VIL+VGVNGVGKTT IG Sbjct: 229 HVSRRQLKDADT--LFVKLKEEMAEILAKVDAPLNIE-GKTPYVILMVGVNGVGKTTTIG 285 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 K++++ G VMLAAGDTFR+AA++QL++W R + V G+D+A++ ++A + A Sbjct: 286 KMARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVAVVAQHTGADSASVIFDAIQAA 345 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ VDVLI DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q Sbjct: 346 KARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTLDASTGQNAVSQA 405 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF A DF Sbjct: 406 KLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFAIPIRYIGVGEGIEDLRPFKADDF 462 >gi|320154974|ref|YP_004187353.1| signal recognition particle receptor protein FtsY subunit alpha [Vibrio vulnificus MO6-24/O] gi|319930286|gb|ADV85150.1| signal recognition particle receptor protein FtsY (alpha subunit) [Vibrio vulnificus MO6-24/O] Length = 395 Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 129/304 (42%), Positives = 198/304 (65%), Gaps = 1/304 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ Sbjct: 83 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLVADVGMDTT 142 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+E L K +D+ LY + E + ++L + +P D S P+VIL+VGVNGV Sbjct: 143 LKIIENLTEKASRRDLKDGEALYGLLKEEMAEILSKVEQPLQVDSSKTPYVILMVGVNGV 202 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ + G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 203 GKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 262 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TG Sbjct: 263 YDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 322 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF Sbjct: 323 QNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFNIPIRYIGVGEGIEDLRPFE 382 Query: 303 AKDF 306 ++F Sbjct: 383 TQEF 386 >gi|218198435|gb|EEC80862.1| hypothetical protein OsI_23481 [Oryza sativa Indica Group] Length = 473 Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 128/299 (42%), Positives = 189/299 (63%), Gaps = 10/299 (3%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + +ELE+ L+ +D+GV +KI+ L Sbjct: 171 FFARLKRSLLKTKQNLGSGFMGLFRGKKIDDDLFDELEEQLLIADVGVDTTRKIITSLTQ 230 Query: 73 KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 K + LY ++SE++ K+ PL N P+VIL+VGVNGVGKTT Sbjct: 231 HASRKQLKDAEALYGKLKEEMSEILAKVDQPLDVSGN-----TPYVILMVGVNGVGKTTT 285 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + Sbjct: 286 IGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNRIPVVAQHTGADSASVIFDAVQ 345 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+A+ +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ LDA+TGQNA+ Sbjct: 346 AAKARGIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDDQAPHEVMLTLDASTGQNAVS 405 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF A DF Sbjct: 406 QAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFKADDF 464 >gi|332142894|ref|YP_004428632.1| signal recognition particle GTPase [Alteromonas macleodii str. 'Deep ecotype'] gi|332143061|ref|YP_004428799.1| signal recognition particle GTPase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552916|gb|AEA99634.1| signal recognition particle GTPase [Alteromonas macleodii str. 'Deep ecotype'] gi|327553083|gb|AEA99801.1| signal recognition particle GTPase [Alteromonas macleodii str. 'Deep ecotype'] Length = 541 Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 126/309 (40%), Positives = 193/309 (62%), Gaps = 6/309 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q E S +L + + T L GI + + +DD + E+LE L+ +D+G+ Sbjct: 220 QDKPKEKKSLFARLRESLSRTKENLGSGIVSLFKGKAIDDELYEDLETQLLVADVGMDTT 279 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFN-----WDFSHRPHVILVV 117 QKI+ L KD+ L ++ + + ML +++P + D S P VIL+V Sbjct: 280 QKIITHLTDSASRKDLKDAEALLEILKQRMSGMLSEVNQPLSDVMQAHDASEGPFVILMV 339 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 GVNGVGKTT IGKL+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D Sbjct: 340 GVNGVGKTTTIGKLAKQFQQQGKKVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGAD 399 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 +A++ Y+A + A+++ D+LI DTAGRL N + LM + K++RV+K+++P+APH V+ L Sbjct: 400 SASVLYDALEAAKSRGTDILIADTAGRLQNKNNLMEELKKVVRVMKKINPNAPHEVMLTL 459 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA TGQNA+ Q ++F+ G TG+ +TK+DGTA+GG + I KIP+ ++GVGE I+D Sbjct: 460 DAGTGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFSIADKFKIPIRYIGVGESIDD 519 Query: 298 LEPFVAKDF 306 L F ++F Sbjct: 520 LRQFDGQEF 528 >gi|190150667|ref|YP_001969192.1| cell division protein FtsY [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307264015|ref|ZP_07545615.1| Signal recognition particle-docking protein FtsY [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915798|gb|ACE62050.1| cell division protein FtsY-like protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870626|gb|EFN02370.1| Signal recognition particle-docking protein FtsY [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 577 Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 127/295 (43%), Positives = 192/295 (65%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G + S +++DD + EELE+ L+ +D+G+ K++ L Sbjct: 274 FFSRLLKGLVKTKQSIGSGFRNFFSGKKIDDDLFEELEEQLLVADLGMPTTTKVINNLTQ 333 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + +LY +L + ++L P+S+P D S +P+VIL+VGVNGVGKTT IGKL Sbjct: 334 HASKKQLKDADLLYQQLKLELGEVLKPVSQPLEIDTSKKPYVILMVGVNGVGKTTTIGKL 393 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R + V GSD+A++ ++A + A + Sbjct: 394 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAS 453 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K +D+LI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 454 KGIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDAGTGQNAISQAKL 513 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I IP+ F+GVGE I DL PF A++F Sbjct: 514 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEF 568 >gi|322513516|ref|ZP_08066617.1| cell division protein FtsY [Actinobacillus ureae ATCC 25976] gi|322120669|gb|EFX92560.1| cell division protein FtsY [Actinobacillus ureae ATCC 25976] Length = 575 Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 130/299 (43%), Positives = 195/299 (65%), Gaps = 9/299 (3%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71 + +L KG T + G + S +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 272 FFSRLLKGLVKTKQSIGSGFRNFFSGKKIDDDLFEELEEQLLIADLGMPTTTKIINSLTQ 331 Query: 72 --TKRYAKDVSV--QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 TK+ KD + Q++ ++ E+ L P+S+P D S +P+VIL+VGVNGVGKTT Sbjct: 332 HATKQQLKDADLLYQQLKVELGEV----LKPVSQPLEIDTSKKPYVILMVGVNGVGKTTT 387 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL++K G VMLAAGDTFR+AA++QL++W +R + V GSD+A++ ++A + Sbjct: 388 IGKLARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQ 447 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A +K +D+LI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Sbjct: 448 SAASKGIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDAGTGQNAIS 507 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++F+ G TG+ +TK+DGTA+GG + I IP+ F+GVGE I DL PF A++F Sbjct: 508 QAKLFNEAVGLTGITLTKLDGTAKGGMIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEF 566 >gi|51473943|ref|YP_067700.1| cell division protein FtsY [Rickettsia typhi str. Wilmington] gi|81389950|sp|Q68VX4|FTSY_RICTY RecName: Full=Cell division protein ftsY homolog gi|51460255|gb|AAU04218.1| cell division protein FtsY [Rickettsia typhi str. Wilmington] Length = 303 Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 129/303 (42%), Positives = 190/303 (62%), Gaps = 3/303 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 ++ KL + + TS + GI I ++LD ELE+LLI SDI + V I+E+ Sbjct: 2 ITIFNKLKQSLSKTSNTISTGIDKIFYKKKLDQTTLNELEELLISSDISITVVTHIIEKF 61 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++ K + V +++LI + L PF ++ ++IL+ GVNGVGKTT IGK Sbjct: 62 KNVKFDKTIDSDTVKEAIAKLIEQQLSKSEIPFTLS-ENKLNIILICGVNGVGKTTTIGK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 LS S G KV +AA DTFR+AAI+QL W DR +A + E+ +D A++AY A +++ Sbjct: 121 LSALYSAQGKKVAVAACDTFRAAAINQLSSWVDRANALLITGEVSADPASVAYRAIQESI 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249 + +D+L IDTAGRLHNN LM + K+++V+K+LD +AP HS+L ++DA TGQN Q+ Sbjct: 181 KQNIDILFIDTAGRLHNNKNLMDELSKIVKVIKKLDENAPTHSIL-IIDAVTGQNTYNQI 239 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F+ V TGLI+TK+DG+A+ G L+ V +P+YF+G+GE I DL+ F DFS Sbjct: 240 EYFNDVTNLTGLIITKLDGSAKAGVLVGAVQKFNLPIYFIGIGEQIEDLKIFNRHDFSRS 299 Query: 310 ITG 312 + G Sbjct: 300 LVG 302 >gi|326423803|ref|NP_760099.2| signal recognition particle-docking protein FtsY [Vibrio vulnificus CMCP6] gi|319999171|gb|AAO09626.2| signal recognition particle-docking protein FtsY [Vibrio vulnificus CMCP6] Length = 395 Score = 249 bits (636), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 129/304 (42%), Positives = 198/304 (65%), Gaps = 1/304 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ Sbjct: 83 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLVADVGMDTT 142 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+E L K +D+ LY + E + ++L + +P D S P+VIL+VGVNGV Sbjct: 143 LKIIENLTEKASRRDLKDGEALYGLLKEEMAEILSKVEQPLQVDSSKTPYVILMVGVNGV 202 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ + G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 203 GKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 262 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TG Sbjct: 263 YDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 322 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF Sbjct: 323 QNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFNIPIRYIGVGEGIEDLRPFE 382 Query: 303 AKDF 306 ++F Sbjct: 383 TQEF 386 >gi|301155326|emb|CBW14792.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein [Haemophilus parainfluenzae T3T1] Length = 485 Score = 249 bits (636), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 121/295 (41%), Positives = 190/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G +++DD + +ELE+ L+ +DIGV KI++ L Sbjct: 180 FFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDDLFDELEEQLLIADIGVPTTNKIIKNLTE 239 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + +LY ++ + ++L P+++P D + +P+VIL+VGVNGVGKTT IGKL Sbjct: 240 HASRKQLQDAELLYQQLKVEMVEILKPVAQPLVIDTTKKPYVILMVGVNGVGKTTTIGKL 299 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K + G VMLAAGDTFR+AA++QL++W +R + V GSD+A++ ++A + A A Sbjct: 300 ARKFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAA 359 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+LI DTAGRL N + LM + K++RV+++ D APH ++ LDA TGQNA+ Q ++ Sbjct: 360 RNIDILIADTAGRLQNKNNLMDELKKIVRVMRKYDETAPHEIMLTLDAGTGQNAISQAKL 419 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G TG+ +TK+DGTA+GG + I +P+ ++GVGE I DL F A++F Sbjct: 420 FDEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLREFNAEEF 474 >gi|78486281|ref|YP_392206.1| signal recognition particle-docking protein FtsY [Thiomicrospira crunogena XCL-2] gi|78364567|gb|ABB42532.1| signal recognition particle-docking protein FtsY [Thiomicrospira crunogena XCL-2] Length = 373 Score = 249 bits (636), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 130/312 (41%), Positives = 195/312 (62%), Gaps = 7/312 (2%) Query: 6 VASESLSWIR-----KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIG 59 V++ES R +L + T E + ++ R+ +DD + +ELE +L+ +D+G Sbjct: 55 VSTESQKTTRPGLFSRLKNSLSKTRKGFTENLATLVMGRKEIDDDLLDELEMILLTADVG 114 Query: 60 VAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118 V I++ L + K++ ++++ + + + +L P+++P P VIL+VG Sbjct: 115 VEATDTIIQNLTGQVSRKELKEPEKLIQALKQQLETLLEPVTQPLVLPEKEGPFVILMVG 174 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNGVGKTT IGKL+KK + G VMLAAGDTFR+AA++QL+ W +R V + G+D+ Sbjct: 175 VNGVGKTTTIGKLAKKFQNEGKSVMLAAGDTFRAAAVEQLQTWGERNQVPVVAQKTGADS 234 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A + A AK +DVLI DTAGRLH S LM + K+ RV++++D APH V+ VLD Sbjct: 235 AAVIFDAIQSATAKNIDVLIADTAGRLHTQSNLMEELKKVKRVIQKVDSSAPHEVMLVLD 294 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A TGQNAL Q + F+ TGL +TK+DGTA+GG + + IPV F+GVGE I+DL Sbjct: 295 AGTGQNALSQAQQFYEAVEITGLTLTKLDGTAKGGIIFALAEKLGIPVRFIGVGEAIDDL 354 Query: 299 EPFVAKDFSAVI 310 PF A +FS + Sbjct: 355 RPFDANEFSEAL 366 >gi|254419772|ref|ZP_05033496.1| signal recognition particle-docking protein FtsY [Brevundimonas sp. BAL3] gi|196185949|gb|EDX80925.1| signal recognition particle-docking protein FtsY [Brevundimonas sp. BAL3] Length = 311 Score = 249 bits (636), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 131/303 (43%), Positives = 194/303 (64%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W ++L+ G + +S ++ + + L + E LE+ L+ SD+G A + +IVE Sbjct: 9 WFQRLSAGLSRSSKQMTDQVVASFVKEPLSEAALERLEEHLLESDLGPAASARIVERFRA 68 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 ++ KD V ++E + L P F+ +P+V+L VGVNG GKTT +GK++ Sbjct: 69 LKFGKDAQEHEVKEALAEAVAAELSPRQAAFDPLSGPKPYVVLFVGVNGSGKTTTLGKIA 128 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 ++ G KVM+ AGDTFR+AA +QLK+WADR A+F G+DAA L ++A+ +A+A+ Sbjct: 129 ADLTAKGAKVMIVAGDTFRAAAREQLKVWADRAGAEFESRRDGADAAGLVFDAYAKARAE 188 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 DV+++DTAGRL N S LM + K++RVLK++DP APH L VLDAT G+NAL Q ++F Sbjct: 189 GFDVVLVDTAGRLQNKSALMDELLKIVRVLKKIDPAAPHDTLLVLDATVGRNALAQEQIF 248 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 A TG++MTK+DGTARGG L+P+ P+ +GVGEGI+DL+PF A+ FS + G Sbjct: 249 GRTAFVTGIVMTKLDGTARGGVLVPVAQASDAPLMLIGVGEGIDDLQPFDARAFSRSLVG 308 Query: 313 CLD 315 D Sbjct: 309 LED 311 >gi|92115105|ref|YP_575033.1| signal recognition particle-docking protein FtsY [Chromohalobacter salexigens DSM 3043] gi|91798195|gb|ABE60334.1| signal recognition particle-docking protein FtsY [Chromohalobacter salexigens DSM 3043] Length = 501 Score = 249 bits (636), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 126/301 (41%), Positives = 189/301 (62%), Gaps = 3/301 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 W ++ G T EG+ + + +++DD + E+LE L+ +D+G+ +I++ L Sbjct: 192 WFARIKAGLGKTRANFTEGLAGLFLGKKQIDDDLMEDLETQLLMADVGIEATTEIIDRLT 251 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129 + K++ + LY + E + +L P+++P + P VIL+VGVNGVGKTT IG Sbjct: 252 ERVSRKELKDPQALYSALQEELQDLLDPVAQPLALPPKGQGPFVILMVGVNGVGKTTTIG 311 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+++ G VMLAAGDTFR+AA++QLK+W +R V G+D+A++ Y+A A Sbjct: 312 KLTQRFQREGRSVMLAAGDTFRAAAVEQLKVWGERNHVPVVAQHTGADSASVIYDALSAA 371 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ VDVLI DTAGRLHN S LM + K+ RV+ +LD APH V+ VLDA TGQNAL Q Sbjct: 372 KARGVDVLIADTAGRLHNKSHLMEELKKVRRVMAKLDEQAPHEVMLVLDAGTGQNALSQA 431 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 F+ TG+ +TK+DGTA+GG + + P+ F+GVGE ++DL PF A+DF + Sbjct: 432 STFNEAVPVTGITLTKLDGTAKGGIIFALAKQLGTPIRFIGVGETLDDLRPFAAEDFVSA 491 Query: 310 I 310 + Sbjct: 492 L 492 >gi|90412727|ref|ZP_01220728.1| putative cell division protein FtsY [Photobacterium profundum 3TCK] gi|90326302|gb|EAS42721.1| putative cell division protein FtsY [Photobacterium profundum 3TCK] Length = 438 Score = 249 bits (635), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 128/299 (42%), Positives = 194/299 (64%), Gaps = 1/299 (0%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 +S + +L +G T G + S +++DD + EELE+ L+ +D+G+ KI+E Sbjct: 131 QSDGFFARLMRGLKKTKTNFGSGFFGLFSGKKIDDELFEELEEQLLIADVGMDTTLKIIE 190 Query: 69 ELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L K K++ LY + E + ML + +P D S +P VIL+VGVNGVGKTT Sbjct: 191 NLTDKANRKELKDGEALYGLLKEELADMLSTVEQPLIVDTSQKPFVILMVGVNGVGKTTT 250 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+K+ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + Sbjct: 251 IGKLAKQFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNGVPVVAQHTGADSASVIFDAIE 310 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+A+ VDV+I DTAGRL N LM + K++RV+K++DP APH ++ +DA TGQNA+ Sbjct: 311 SAKARNVDVVIADTAGRLQNKGHLMEELRKIVRVMKKVDPAAPHEIMLTVDAGTGQNAIS 370 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++F VA +G+ ++K+DGTA+GG + I IP+ ++G+GEGI+DL PFVA +F Sbjct: 371 QAKLFSEVAPVSGITISKLDGTAKGGVIFAIADQFSIPIRYIGIGEGIDDLRPFVADEF 429 >gi|299769869|ref|YP_003731895.1| signal recognition particle-docking protein FtsY [Acinetobacter sp. DR1] gi|298699957|gb|ADI90522.1| signal recognition particle-docking protein FtsY [Acinetobacter sp. DR1] Length = 370 Score = 249 bits (635), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 135/307 (43%), Positives = 196/307 (63%), Gaps = 2/307 (0%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 V + ++ +G T +G+ +I I + +DD + EE+E+ L+ +DIGV + Sbjct: 59 VEQPKTGFFGRMKEGLTKTRRNFADGMVNILIGGKEIDDELLEEVEEQLLVADIGVEATK 118 Query: 65 KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 I+ L + D+ LY + E + +L P KP + D + P+VIL+VGVNGVG Sbjct: 119 TIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVG 178 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+K++ G KVMLAAGDTFR+AA +QL+IW +R V G+D+A++ + Sbjct: 179 KTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDISVVAQGHGADSASVIF 238 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +AF+ A+AK +DVLI DTAGRLHN S LM + K+ RV++++D APH ++ V+DA TGQ Sbjct: 239 DAFESARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQ 298 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NA+ QV+ F G TG+ +TK+DGTA+GG L I +P+ F+GVGE I+DL PF A Sbjct: 299 NAINQVQEFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSA 358 Query: 304 KDFSAVI 310 K F A + Sbjct: 359 KSFVAAL 365 >gi|24376059|ref|NP_720102.1| cell division protein FtsY [Shewanella oneidensis MR-1] gi|24351075|gb|AAN57546.1|AE015890_7 cell division protein FtsY [Shewanella oneidensis MR-1] Length = 510 Score = 249 bits (635), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 128/296 (43%), Positives = 195/296 (65%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L +G TS + G + +++DD + EELE+ L+ +D+GV ++++ L Sbjct: 203 SFFARLKRGLMRTSENIGSGFIGLFRGKKIDDELFEELEEQLLIADVGVETTGRLIKSLT 262 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + LYD+ + + K L P++ P + ++ P VIL+VGVNGVGKTT IGK Sbjct: 263 EHASRKQLKDAEALYDLLRDEMQKTLDPVAIPLVPENANGPFVILMVGVNGVGKTTTIGK 322 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G VMLAAGDTFR+AA++QL++W R + V G+D+A++ ++A + A+ Sbjct: 323 LAKQYQRQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASVLFDALQAAK 382 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+K+DVLI DTAGRL N S LM + K++RV+K+LDP APH V+ LDA+TGQNA+ Q + Sbjct: 383 ARKIDVLIADTAGRLQNKSHLMEELKKVVRVMKKLDPEAPHEVMLTLDASTGQNAISQAQ 442 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F G TG+ ++K+DGTA+GG + I KIP+ ++GVGE I+DL F +K+F Sbjct: 443 LFQEAVGVTGMTISKLDGTAKGGVVFAIADKFKIPLRYIGVGEQIDDLRTFNSKEF 498 >gi|148550186|ref|YP_001270288.1| signal recognition particle-docking protein FtsY [Pseudomonas putida F1] gi|148514244|gb|ABQ81104.1| signal recognition particle-docking protein FtsY [Pseudomonas putida F1] Length = 497 Score = 249 bits (635), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 129/296 (43%), Positives = 190/296 (64%), Gaps = 2/296 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L +G + TS + EG+ + ++ +DD + +E+E L+ +D+GV IV+ L Sbjct: 193 FFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSAIVQNLT 252 Query: 72 TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K K ++ LY + E + +L P+ +P ++P+VILVVGVNG GKTT IGK Sbjct: 253 QKVARKQLADADALYKSLQEELAALLRPVEQPLKVQAQNKPYVILVVGVNGAGKTTTIGK 312 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + A+ Sbjct: 313 LAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFDAVQAAK 372 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ VDVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q + Sbjct: 373 ARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDVEAPHEVLLVLDAGTGQNAISQAK 432 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ TGL +TK+DGTA+GG + + IP+ F+GVGEGI+DL F A+ F Sbjct: 433 YFNQSVELTGLALTKLDGTAKGGVIFALAKQFNIPIRFIGVGEGIDDLRTFEAEPF 488 >gi|293607882|ref|ZP_06690185.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828455|gb|EFF86817.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325122473|gb|ADY81996.1| cell division protein [Acinetobacter calcoaceticus PHEA-2] Length = 370 Score = 249 bits (635), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 135/307 (43%), Positives = 196/307 (63%), Gaps = 2/307 (0%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 V + ++ +G T +G+ +I I + +DD + EE+E+ L+ +DIGV + Sbjct: 59 VEQPKTGFFGRMKEGLTKTRRNFADGMVNILIGGKEIDDELLEEVEEQLLVADIGVEATK 118 Query: 65 KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 I+ L + D+ LY + E + +L P KP + D + P+VIL+VGVNGVG Sbjct: 119 TIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVG 178 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+K++ G KVMLAAGDTFR+AA +QL+IW +R V G+D+A++ + Sbjct: 179 KTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDISVVAQGHGADSASVIF 238 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +AF+ A+AK +DVLI DTAGRLHN S LM + K+ RV++++D APH ++ V+DA TGQ Sbjct: 239 DAFESARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQ 298 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NA+ QV+ F G TG+ +TK+DGTA+GG L I +P+ F+GVGE I+DL PF A Sbjct: 299 NAINQVQEFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSA 358 Query: 304 KDFSAVI 310 K F A + Sbjct: 359 KSFVAAL 365 >gi|21672318|ref|NP_660385.1| cell division protein FtsY [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25090363|sp|Q8KA77|FTSY_BUCAP RecName: Full=Cell division protein ftsY homolog gi|21622918|gb|AAM67596.1| cell division protein FtsY [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 351 Score = 249 bits (635), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 126/304 (41%), Positives = 192/304 (63%), Gaps = 2/304 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q + ++ + ++ KL T + I+ I S+++DD EELED ++ SDIGV Sbjct: 42 QNIDNKKIDFLFKLKNSLNKTKQFFGDSISRIFLSKKIDDAFFEELEDTMLLSDIGVHTT 101 Query: 64 QKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 +I+ +L+ K++ + ++V + + E ++ +L + KP +H P VILVVG+NG Sbjct: 102 DQIISKLINDATHKELKNPEKVYFLLKEHMYSILNRVEKPLKIS-NHTPFVILVVGINGT 160 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT + KL+KK AG VMLAA DTFR+A I+QL+I R + + GSD A++A Sbjct: 161 GKTTTVSKLAKKYKLAGKSVMLAAADTFRAAGIEQLQILGKRNNIPVISQSSGSDPASVA 220 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A K A +KK+DVLIIDTAGRLHN L+ + KM+RV+K+L+ APH ++ ++DA G Sbjct: 221 FDAVKSAISKKIDVLIIDTAGRLHNKLHLLEELKKMVRVIKKLNLSAPHEIMLIIDACNG 280 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QN ++Q EMFH TGL++TK+DGTA+GG + + IP+ ++G+GE DL F Sbjct: 281 QNTIKQTEMFHKAINLTGLVITKLDGTAKGGVIFSLANQFLIPIRYIGIGEKTTDLVVFN 340 Query: 303 AKDF 306 + DF Sbjct: 341 SNDF 344 >gi|260771642|ref|ZP_05880562.1| signal recognition particle receptor protein FtsY [Vibrio metschnikovii CIP 69.14] gi|260613419|gb|EEX38618.1| signal recognition particle receptor protein FtsY [Vibrio metschnikovii CIP 69.14] Length = 388 Score = 249 bits (635), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 127/304 (41%), Positives = 196/304 (64%), Gaps = 1/304 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ S S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ Sbjct: 76 QEQEKPSESFFVRLKRSLSRTKANIGAGFFGLFQGKKIDDQLFEELEEQLLMADVGMETT 135 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+ L K + + LY + + + +ML + KP D P+VIL+VGVNGV Sbjct: 136 VKIITSLTEKASRQQLRDGEALYALLKQEMAEMLAKVEKPLQIDSQTMPYVILMVGVNGV 195 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 196 GKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNHVPVIAQHTGADSASVI 255 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ +DV+I DTAGRL N + LM + K++RV+K++DP APH ++ LDA TG Sbjct: 256 YDAIEAAKARGIDVVIADTAGRLQNKANLMEELKKIVRVMKKIDPQAPHEIMLTLDAGTG 315 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F A TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI+DL PFV Sbjct: 316 QNAISQAKLFSQAAPLTGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEGIDDLRPFV 375 Query: 303 AKDF 306 ++F Sbjct: 376 TQEF 379 >gi|303253508|ref|ZP_07339647.1| cell division protein FtsY-like protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248379|ref|ZP_07530402.1| Signal recognition particle-docking protein FtsY [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307257413|ref|ZP_07539182.1| Signal recognition particle-docking protein FtsY [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307261833|ref|ZP_07543497.1| Signal recognition particle-docking protein FtsY [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|302647618|gb|EFL77835.1| cell division protein FtsY-like protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855117|gb|EFM87297.1| Signal recognition particle-docking protein FtsY [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306864065|gb|EFM95979.1| Signal recognition particle-docking protein FtsY [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306868450|gb|EFN00263.1| Signal recognition particle-docking protein FtsY [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 576 Score = 249 bits (635), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 127/295 (43%), Positives = 191/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G + S +++DD + EELE+ L+ +D+G+ K++ L Sbjct: 273 FFSRLLKGLVKTKQSIGSGFRNFFSGKKIDDDLFEELEEQLLVADLGMPTTTKVINNLTQ 332 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + +LY +L + ++L P+S+P D S +P+VIL+VGVNGVGKTT IGKL Sbjct: 333 HASKKQLKDADLLYQQLKLELGEVLKPVSQPLEIDTSKKPYVILMVGVNGVGKTTTIGKL 392 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R + V GSD+A++ ++A + A + Sbjct: 393 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAS 452 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K +D+LI DTAGRL N + LM + K++RV K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 453 KGIDILIADTAGRLQNKNNLMDELKKIVRVTKKYDESAPHEIMLTLDAGTGQNAISQAKL 512 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I IP+ F+GVGE I DL PF A++F Sbjct: 513 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEF 567 >gi|165976771|ref|YP_001652364.1| cell division protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876872|gb|ABY69920.1| cell division protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 573 Score = 248 bits (634), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 127/295 (43%), Positives = 191/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G + S +++DD + EELE+ L+ +D+G+ K++ L Sbjct: 270 FFSRLLKGLVKTKQSIGSGFRNFFSGKKIDDDLFEELEEQLLVADLGMPTTTKVINNLTQ 329 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + +LY +L + ++L P+S+P D S +P+VIL+VGVNGVGKTT IGKL Sbjct: 330 HASKKQLKDADLLYQQLKLELGEVLKPVSQPLEIDTSKKPYVILMVGVNGVGKTTTIGKL 389 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R + V GSD+A++ ++A + A + Sbjct: 390 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAS 449 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K +D+LI DTAGRL N + LM + K++RV K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 450 KGIDILIADTAGRLQNKNNLMDELKKIVRVTKKYDESAPHEIMLTLDAGTGQNAISQAKL 509 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I IP+ F+GVGE I DL PF A++F Sbjct: 510 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEF 564 >gi|117922404|ref|YP_871596.1| signal recognition particle-docking protein FtsY [Shewanella sp. ANA-3] gi|117614736|gb|ABK50190.1| signal recognition particle-docking protein FtsY [Shewanella sp. ANA-3] Length = 562 Score = 248 bits (634), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 126/296 (42%), Positives = 196/296 (66%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L +G TS + G + +++DD + EELE+ L+ +D+GV ++++ L Sbjct: 255 SFFARLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTSRLIKSLT 314 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + LY++ + + K L P++ P + ++ P+VIL+VGVNGVGKTT IGK Sbjct: 315 EHASRKQLKDAEALYELLRDEMQKTLDPVAIPLVPENANGPYVILMVGVNGVGKTTTIGK 374 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G VMLAAGDTFR+AA++QL++W R + V G+D+A++ ++A + A+ Sbjct: 375 LAKQYQRQGKTVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASVLFDALQAAK 434 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+K+D+LI DTAGRL N S LM + K++RV+K+LDP APH V+ LDA+TGQNA+ Q + Sbjct: 435 ARKIDILIADTAGRLQNKSHLMEELKKVVRVMKKLDPEAPHEVMLTLDASTGQNAISQAQ 494 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F G TG+ ++K+DGTA+GG + I KIP+ ++GVGE I+DL F +K+F Sbjct: 495 LFQEAVGVTGMTISKLDGTAKGGVVFAIADKFKIPLRYIGVGEQIDDLRTFNSKEF 550 >gi|37678296|ref|NP_932905.1| signal recognition particle GTPase [Vibrio vulnificus YJ016] gi|37197035|dbj|BAC92876.1| signal recognition particle GTPase [Vibrio vulnificus YJ016] Length = 437 Score = 248 bits (634), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 129/304 (42%), Positives = 198/304 (65%), Gaps = 1/304 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ Sbjct: 125 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLVADVGMDTT 184 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+E L K +D+ LY + E + ++L + +P D S P+VIL+VGVNGV Sbjct: 185 LKIIENLTEKASRRDLKDGEALYGLLKEEMAEILSKVEQPLQVDSSKTPYVILMVGVNGV 244 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ + G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 245 GKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 304 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TG Sbjct: 305 YDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 364 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF Sbjct: 365 QNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFNIPIRYIGVGEGIEDLRPFE 424 Query: 303 AKDF 306 ++F Sbjct: 425 TQEF 428 >gi|53728959|ref|ZP_00134416.2| COG0552: Signal recognition particle GTPase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208810|ref|YP_001054035.1| cell division protein FtsY-like protein [Actinobacillus pleuropneumoniae L20] gi|126097602|gb|ABN74430.1| cell division protein FtsY-like protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 577 Score = 248 bits (634), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 127/295 (43%), Positives = 191/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G + S +++DD + EELE+ L+ +D+G+ K++ L Sbjct: 274 FFSRLLKGLVKTKQSIGSGFRNFFSGKKIDDDLFEELEEQLLVADLGMPTTTKVINNLTQ 333 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + +LY +L + ++L P+S+P D S +P+VIL+VGVNGVGKTT IGKL Sbjct: 334 HASKKQLKDADLLYQQLKLELGEVLKPVSQPLEIDTSKKPYVILMVGVNGVGKTTTIGKL 393 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R + V GSD+A++ ++A + A + Sbjct: 394 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAS 453 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K +D+LI DTAGRL N + LM + K++RV K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 454 KGIDILIADTAGRLQNKNNLMDELKKIVRVTKKYDESAPHEIMLTLDAGTGQNAISQAKL 513 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I IP+ F+GVGE I DL PF A++F Sbjct: 514 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEF 568 >gi|50123266|ref|YP_052433.1| cell division protein FtsY [Pectobacterium atrosepticum SCRI1043] gi|49613792|emb|CAG77243.1| cell division protein [Pectobacterium atrosepticum SCRI1043] Length = 469 Score = 248 bits (634), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 124/297 (41%), Positives = 191/297 (64%), Gaps = 6/297 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71 + +L + T L G + +++DD + +ELE+ L+ +D+GV +KI++ L Sbjct: 167 FFARLKRSLVKTRENLGSGFIGLFRGKKIDDDLFDELEEQLLIADVGVETTRKIIDSLTE 226 Query: 72 --TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 ++R KD + + E + ++L + P N + P+VIL+VGVNGVGKTT IG Sbjct: 227 HASRRQLKDADT--LFVKLKEEMAEILAKVDVPLNIE-GKTPYVILMVGVNGVGKTTTIG 283 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 K++++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A Sbjct: 284 KMARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVPVIAQHTGADSASVIFDAIQAA 343 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ VDVLI DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q Sbjct: 344 KARGVDVLIADTAGRLQNKAYLMEELKKIVRVMKKLDEDAPHEVMLTLDASTGQNAVSQA 403 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF A DF Sbjct: 404 KLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFAIPIRYIGVGEGIEDLRPFKADDF 460 >gi|330891336|gb|EGH23997.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. mori str. 301020] Length = 354 Score = 248 bits (634), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 128/305 (41%), Positives = 194/305 (63%), Gaps = 2/305 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62 Q+ + + + +L +G + TS + EG+ + + + +DD + EE+E L+ +D+GV Sbjct: 39 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLPADVGVEA 98 Query: 63 AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 I++ L K K ++ + LY + + ML P+ +P H+P VILVVGVNG Sbjct: 99 TSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNG 158 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 159 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 218 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA T Sbjct: 219 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 278 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q + F+ TGL +TK+DGTA+GG + + +P++++GVGEGI+DL F Sbjct: 279 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIHYIGVGEGIDDLRTF 338 Query: 302 VAKDF 306 A+ F Sbjct: 339 EAEPF 343 >gi|307246266|ref|ZP_07528347.1| Signal recognition particle-docking protein FtsY [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307250606|ref|ZP_07532547.1| Signal recognition particle-docking protein FtsY [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307255250|ref|ZP_07537065.1| Signal recognition particle-docking protein FtsY [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259685|ref|ZP_07541408.1| Signal recognition particle-docking protein FtsY [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852875|gb|EFM85099.1| Signal recognition particle-docking protein FtsY [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306857347|gb|EFM89462.1| Signal recognition particle-docking protein FtsY [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306861799|gb|EFM93778.1| Signal recognition particle-docking protein FtsY [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866225|gb|EFM98090.1| Signal recognition particle-docking protein FtsY [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 577 Score = 248 bits (634), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 127/295 (43%), Positives = 191/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G + S +++DD + EELE+ L+ +D+G+ K++ L Sbjct: 274 FFSRLLKGLVKTKQSIGSGFRNFFSGKKIDDDLFEELEEQLLVADLGMPTTTKVINNLTQ 333 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + +LY +L + ++L P+S+P D S +P+VIL+VGVNGVGKTT IGKL Sbjct: 334 HASKKQLKDADLLYQQLKLELGEVLKPVSQPLEIDTSKKPYVILMVGVNGVGKTTTIGKL 393 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R + V GSD+A++ ++A + A + Sbjct: 394 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAS 453 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K +D+LI DTAGRL N + LM + K++RV K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 454 KGIDILIADTAGRLQNKNNLMDELKKIVRVTKKYDESAPHEIMLTLDAGTGQNAISQAKL 513 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I IP+ F+GVGE I DL PF A++F Sbjct: 514 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEF 568 >gi|289672445|ref|ZP_06493335.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. syringae FF5] Length = 339 Score = 248 bits (634), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 128/298 (42%), Positives = 190/298 (63%), Gaps = 2/298 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L +G + TS + EG+ + + + +DD + EE+E L+ +D+GV I++ Sbjct: 31 VGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIKS 90 Query: 70 LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L K K ++ + LY + + ML P+ +P HRP VILVVGVNG GKTT I Sbjct: 91 LTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKSEHRPFVILVVGVNGAGKTTTI 150 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + Sbjct: 151 GKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQA 210 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q Sbjct: 211 AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQ 270 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A+ F Sbjct: 271 AKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 328 >gi|262279319|ref|ZP_06057104.1| signal recognition particle-docking protein FtsY [Acinetobacter calcoaceticus RUH2202] gi|262259670|gb|EEY78403.1| signal recognition particle-docking protein FtsY [Acinetobacter calcoaceticus RUH2202] Length = 370 Score = 248 bits (634), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 136/311 (43%), Positives = 197/311 (63%), Gaps = 2/311 (0%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGV 60 S V + ++ +G T +G+ +I I + +DD + EE+E+ L+ +DIGV Sbjct: 55 SETAVEQPKSGFFGRMKEGLTKTRRNFADGMVNILIGGKEIDDELLEEVEEQLLVADIGV 114 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 + I+ L + D+ LY + E + +L P KP + D + P+VIL+VGV Sbjct: 115 EATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGV 174 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+K++ G KVMLAAGDTFR+AA +QL+IW +R V G+D+A Sbjct: 175 NGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSA 234 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++AF+ A+AK +DVLI DTAGRLHN S LM + K+ RV++++D APH ++ V+DA Sbjct: 235 SVIFDAFESARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDA 294 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQNA+ QV+ F G TG+ +TK+DGTA+GG L I +P+ F+GVGE I+DL Sbjct: 295 GTGQNAINQVQEFDQTVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLR 354 Query: 300 PFVAKDFSAVI 310 PF AK F A + Sbjct: 355 PFSAKSFVAAL 365 >gi|227358349|ref|ZP_03842690.1| cell division protein FtsY [Proteus mirabilis ATCC 29906] gi|227161685|gb|EEI46722.1| cell division protein FtsY [Proteus mirabilis ATCC 29906] Length = 401 Score = 248 bits (634), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 133/295 (45%), Positives = 188/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T L G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 99 FFSRLKKGLLKTRQNLGSGFMGLFRGKKIDDELFEELEEQLLIADVGMDTTSKIINSLTQ 158 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 KD+ LY + E + +L + KP N + +P VIL+VGVNGVGKTT IGKL Sbjct: 159 HASRKDLKDAESLYGKLREEMGDILNKVDKPLNIE-GKKPFVILMVGVNGVGKTTTIGKL 217 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R + G+D A++ ++A + AQA Sbjct: 218 ARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADPASVIFDAIQSAQA 277 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 278 KGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTLDASTGQNAVSQAKL 337 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TGL +TK+DGTA+GG + I IP+ ++GVGEGI DL PF A DF Sbjct: 338 FNETVGLTGLTLTKLDGTAKGGVIFSIADQFGIPIRYIGVGEGIEDLRPFKADDF 392 >gi|332871215|ref|ZP_08439792.1| signal recognition particle-docking protein FtsY [Acinetobacter baumannii 6013113] gi|332731700|gb|EGJ62983.1| signal recognition particle-docking protein FtsY [Acinetobacter baumannii 6013113] Length = 369 Score = 248 bits (634), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 134/300 (44%), Positives = 196/300 (65%), Gaps = 2/300 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + ++ +G + T +G+ +I I + +DD + EE+E+ L+ +DIGV + I+ L Sbjct: 65 FFGRMKEGLSKTRRNFTDGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLT 124 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + D+ LY + E + +L P KP + D + P+VIL+VGVNGVGKTT IGK Sbjct: 125 ERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGKTTTIGK 184 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K++ G KVMLAAGDTFR+AA +QL+IW +R V G+D+A++ ++AF+ A+ Sbjct: 185 LAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDAFESAR 244 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 AK +DVLI DTAGRLHN S LM + K+ RV++++D APH ++ V+DA TGQNA+ QV+ Sbjct: 245 AKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQ 304 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TG+ +TK+DGTA+GG L I +P+ F+GVGE I+DL PF AK F A + Sbjct: 305 EFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAAL 364 >gi|227113848|ref|ZP_03827504.1| cell division protein FtsY [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 503 Score = 248 bits (634), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 125/297 (42%), Positives = 190/297 (63%), Gaps = 6/297 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71 + +L + T L G + +++DD + +ELE+ L+ +D+GV +KI+ L Sbjct: 201 FFARLKRSLVKTRQNLGSGFIGLFRGKKIDDDLFDELEEQLLVADVGVETTRKIITSLTE 260 Query: 72 --TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 ++R KD + + E + ++L + P N + P+VIL+VGVNGVGKTT IG Sbjct: 261 HASRRQLKDADT--LFVKLKEEMAEILAKVDAPLNIE-GKTPYVILMVGVNGVGKTTTIG 317 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 K++++ G VMLAAGDTFR+AA++QL++W R + V G+D+A++ ++A + A Sbjct: 318 KMARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVAVVAQHTGADSASVIFDAIQAA 377 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ VDVLI DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q Sbjct: 378 KARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTLDASTGQNAVSQA 437 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF A DF Sbjct: 438 KLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFAIPIRYIGVGEGIEDLRPFKADDF 494 >gi|169795732|ref|YP_001713525.1| cell division protein [Acinetobacter baumannii AYE] gi|213157575|ref|YP_002319620.1| signal recognition particle-docking protein FtsY [Acinetobacter baumannii AB0057] gi|215483218|ref|YP_002325425.1| signal recognition particle-docking protein FtsY [Acinetobacter baumannii AB307-0294] gi|301345809|ref|ZP_07226550.1| signal recognition particle-docking protein FtsY [Acinetobacter baumannii AB056] gi|301513516|ref|ZP_07238753.1| signal recognition particle-docking protein FtsY [Acinetobacter baumannii AB058] gi|301594918|ref|ZP_07239926.1| signal recognition particle-docking protein FtsY [Acinetobacter baumannii AB059] gi|332850276|ref|ZP_08432624.1| signal recognition particle-docking protein FtsY [Acinetobacter baumannii 6013150] gi|169148659|emb|CAM86525.1| cell division protein [Acinetobacter baumannii AYE] gi|213056735|gb|ACJ41637.1| signal recognition particle-docking protein FtsY [Acinetobacter baumannii AB0057] gi|213986284|gb|ACJ56583.1| signal recognition particle-docking protein FtsY [Acinetobacter baumannii AB307-0294] gi|332730851|gb|EGJ62160.1| signal recognition particle-docking protein FtsY [Acinetobacter baumannii 6013150] Length = 368 Score = 248 bits (634), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 134/300 (44%), Positives = 196/300 (65%), Gaps = 2/300 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + ++ +G + T +G+ +I I + +DD + EE+E+ L+ +DIGV + I+ L Sbjct: 64 FFGRMKEGLSKTRRNFTDGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLT 123 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + D+ LY + E + +L P KP + D + P+VIL+VGVNGVGKTT IGK Sbjct: 124 ERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGKTTTIGK 183 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K++ G KVMLAAGDTFR+AA +QL+IW +R V G+D+A++ ++AF+ A+ Sbjct: 184 LAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDAFESAR 243 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 AK +DVLI DTAGRLHN S LM + K+ RV++++D APH ++ V+DA TGQNA+ QV+ Sbjct: 244 AKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQ 303 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TG+ +TK+DGTA+GG L I +P+ F+GVGE I+DL PF AK F A + Sbjct: 304 EFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAAL 363 >gi|197287408|ref|YP_002153280.1| cell division protein [Proteus mirabilis HI4320] gi|194684895|emb|CAR47054.1| cell division protein [Proteus mirabilis HI4320] Length = 612 Score = 248 bits (633), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 133/295 (45%), Positives = 188/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T L G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 310 FFSRLKKGLLKTRQNLGSGFMGLFRGKKIDDELFEELEEQLLIADVGMDTTSKIINSLTQ 369 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 KD+ LY + E + +L + KP N + +P VIL+VGVNGVGKTT IGKL Sbjct: 370 HASRKDLKDAESLYGKLREEMGDILNKVDKPLNIE-GKKPFVILMVGVNGVGKTTTIGKL 428 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R + G+D A++ ++A + AQA Sbjct: 429 ARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADPASVIFDAIQSAQA 488 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 489 KGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTLDASTGQNAVSQAKL 548 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TGL +TK+DGTA+GG + I IP+ ++GVGEGI DL PF A DF Sbjct: 549 FNETVGLTGLTLTKLDGTAKGGVIFSIADQFGIPIRYIGVGEGIEDLRPFKADDF 603 >gi|184158365|ref|YP_001846704.1| Signal recognition particle GTPase [Acinetobacter baumannii ACICU] gi|239503951|ref|ZP_04663261.1| Signal recognition particle GTPase [Acinetobacter baumannii AB900] gi|260554794|ref|ZP_05827015.1| signal recognition particle-docking protein FtsY [Acinetobacter baumannii ATCC 19606] gi|332872440|ref|ZP_08440413.1| signal recognition particle-docking protein FtsY [Acinetobacter baumannii 6014059] gi|183209959|gb|ACC57357.1| Signal recognition particle GTPase [Acinetobacter baumannii ACICU] gi|193077529|gb|ABO12357.2| cell division protein [Acinetobacter baumannii ATCC 17978] gi|260411336|gb|EEX04633.1| signal recognition particle-docking protein FtsY [Acinetobacter baumannii ATCC 19606] gi|322508691|gb|ADX04145.1| Cell division protein [Acinetobacter baumannii 1656-2] gi|323518297|gb|ADX92678.1| Signal recognition particle GTPase [Acinetobacter baumannii TCDC-AB0715] gi|332739363|gb|EGJ70217.1| signal recognition particle-docking protein FtsY [Acinetobacter baumannii 6014059] Length = 368 Score = 248 bits (633), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 134/300 (44%), Positives = 196/300 (65%), Gaps = 2/300 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + ++ +G + T +G+ +I I + +DD + EE+E+ L+ +DIGV + I+ L Sbjct: 64 FFGRMKEGLSKTRRNFTDGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLT 123 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + D+ LY + E + +L P KP + D + P+VIL+VGVNGVGKTT IGK Sbjct: 124 ERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGKTTTIGK 183 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K++ G KVMLAAGDTFR+AA +QL+IW +R V G+D+A++ ++AF+ A+ Sbjct: 184 LAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDAFESAR 243 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 AK +DVLI DTAGRLHN S LM + K+ RV++++D APH ++ V+DA TGQNA+ QV+ Sbjct: 244 AKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQ 303 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TG+ +TK+DGTA+GG L I +P+ F+GVGE I+DL PF AK F A + Sbjct: 304 EFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAAL 363 >gi|153835089|ref|ZP_01987756.1| cell division protein FtsY [Vibrio harveyi HY01] gi|148868439|gb|EDL67547.1| cell division protein FtsY [Vibrio harveyi HY01] Length = 410 Score = 248 bits (633), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 128/304 (42%), Positives = 198/304 (65%), Gaps = 1/304 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + S +++DD + EELE+ L+ +D+G+ Sbjct: 98 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMETT 157 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+ L K D+ LY + E + ++L + +P D S P+VIL+VGVNGV Sbjct: 158 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILAKVEQPLEIDSSKTPYVILMVGVNGV 217 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ + G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 218 GKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 277 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N + LM + K++RV+K++D APH ++ LDA TG Sbjct: 278 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 337 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL PF Sbjct: 338 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFE 397 Query: 303 AKDF 306 ++F Sbjct: 398 TQEF 401 >gi|307546425|ref|YP_003898904.1| signal recognition particle receptor [Halomonas elongata DSM 2581] gi|307218449|emb|CBV43719.1| K03110 signal recognition particle receptor [Halomonas elongata DSM 2581] Length = 455 Score = 248 bits (633), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 130/310 (41%), Positives = 188/310 (60%), Gaps = 9/310 (2%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVA 61 +K E W ++ G T L +G+ + R+ +DD + EELE L+ +D+G+ Sbjct: 137 REKPRGEKKGWFARIKDGLGKTRANLTDGLAGLFLGRKQIDDDLMEELETQLLMADVGIE 196 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHRPHVILV 116 +I++ L + K++ L+ +++ L+ + PL P P VILV Sbjct: 197 ATTEIIDRLTERVSRKELKDPEALFKALQEELASLLDGVTQPLELPPK---GEGPFVILV 253 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGKL+++ G VMLAAGDTFR+AA++QLK+W +R S V G+ Sbjct: 254 VGVNGVGKTTTIGKLTQRFQREGRSVMLAAGDTFRAAAVEQLKVWGERNSVPVVAQHTGA 313 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D+A++ Y+A A+A+ VDVLI DTAGRLHN S LM + K+ RV+ +LD APH V+ V Sbjct: 314 DSASVVYDALAAARARGVDVLIADTAGRLHNKSHLMEELKKVRRVMGKLDADAPHEVMLV 373 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDA TGQNAL Q F+ TG+ +TK+DGTA+GG + + P+ F+GVGE ++ Sbjct: 374 LDAGTGQNALSQASTFNEAVPVTGITLTKLDGTAKGGIIFALAQQLGTPIRFIGVGETLD 433 Query: 297 DLEPFVAKDF 306 DL PF A++F Sbjct: 434 DLRPFAAREF 443 >gi|308051465|ref|YP_003915031.1| signal recognition particle-docking protein FtsY [Ferrimonas balearica DSM 9799] gi|307633655|gb|ADN77957.1| signal recognition particle-docking protein FtsY [Ferrimonas balearica DSM 9799] Length = 590 Score = 248 bits (633), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 127/296 (42%), Positives = 190/296 (64%), Gaps = 3/296 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L G TS + G + +++DD + EELE L+ +D+GV +I++ L Sbjct: 285 FFARLKAGLRRTSENIGGGFMALFKGKKIDDELFEELETQLLLADVGVETTSRIIDSLTD 344 Query: 73 KRYAKDVSVQRVLYD--VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K ++ L+ SEL L + +P + + P VIL+VGVNGVGKTT IGK Sbjct: 345 KASFGELKDSDALFAHLKSEL-KDTLSKVDQPLVIENPNGPFVILMVGVNGVGKTTTIGK 403 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G VMLAAGDTFR+AA++QL++W DR + + G+D+A++ ++A + A+ Sbjct: 404 LAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTGADSASVIFDALQAAK 463 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ VDVLI DTAGRL N + LM + K++RV+K+LD +APH V+ LDA+TGQNA+ Q + Sbjct: 464 ARNVDVLIADTAGRLQNKAHLMDELKKIVRVMKKLDENAPHEVMLTLDASTGQNAISQAQ 523 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F+ G TGL +TK+DGTA+GG + + IPV ++GVGEGI+DL PF ++ F Sbjct: 524 IFNEAVGLTGLTLTKLDGTAKGGVIFALADKFGIPVRYIGVGEGIDDLRPFESQAF 579 >gi|156972628|ref|YP_001443535.1| signal recognition particle GTPase [Vibrio harveyi ATCC BAA-1116] gi|156524222|gb|ABU69308.1| hypothetical protein VIBHAR_00280 [Vibrio harveyi ATCC BAA-1116] Length = 408 Score = 248 bits (633), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 128/304 (42%), Positives = 198/304 (65%), Gaps = 1/304 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + S +++DD + EELE+ L+ +D+G+ Sbjct: 96 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMETT 155 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+ L K D+ LY + E + ++L + +P D S P+VIL+VGVNGV Sbjct: 156 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILAKVEQPLEIDSSKTPYVILMVGVNGV 215 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ + G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 216 GKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 275 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N + LM + K++RV+K++D APH ++ LDA TG Sbjct: 276 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 335 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL PF Sbjct: 336 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFE 395 Query: 303 AKDF 306 ++F Sbjct: 396 TQEF 399 >gi|227329287|ref|ZP_03833311.1| cell division protein FtsY [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 488 Score = 248 bits (633), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 125/297 (42%), Positives = 190/297 (63%), Gaps = 6/297 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71 + +L + T L G + +++DD + +ELE+ L+ +D+GV +KI+ L Sbjct: 186 FFARLKRSLVKTRQNLGSGFIGLFRGKKIDDDLFDELEEQLLVADVGVETTRKIIGSLTE 245 Query: 72 --TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 ++R KD + + E + ++L + P N + P+VIL+VGVNGVGKTT IG Sbjct: 246 HASRRQLKDADT--LFVKLKEEMAEILAKVDAPLNIE-GKTPYVILMVGVNGVGKTTTIG 302 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 K++++ G VMLAAGDTFR+AA++QL++W R + V G+D+A++ ++A + A Sbjct: 303 KMARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVAVVAQHTGADSASVIFDAIQAA 362 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ VDVLI DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q Sbjct: 363 KARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTLDASTGQNAVSQA 422 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF A DF Sbjct: 423 KLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFAIPIRYIGVGEGIEDLRPFKADDF 479 >gi|167648815|ref|YP_001686478.1| signal recognition particle-docking protein FtsY [Caulobacter sp. K31] gi|167351245|gb|ABZ73980.1| signal recognition particle-docking protein FtsY [Caulobacter sp. K31] Length = 314 Score = 248 bits (633), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 134/304 (44%), Positives = 202/304 (66%), Gaps = 1/304 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W ++LT G A +S ++ E +T + + + LD ++LE++LI +D+G +A +I + Sbjct: 11 WFQRLTSGLARSSQQMTEQVTGVFTKKPLDQEQLDQLEEMLIEADLGPQIAARIADAFGK 70 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 R+ K + V ++EL+ L F+ +P+V+L +GVNG GKTT +GK++ Sbjct: 71 ARFGKSSTEIEVKEALAELVAAELSDREGTFDPLSGPKPYVVLFIGVNGSGKTTTLGKIA 130 Query: 133 KKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++ + KV++AAGDTFR+AA++QLK+WADR ADF+ G+DAAALAYEA ++A+ Sbjct: 131 SDLTHNKKAKVLIAAGDTFRAAAVEQLKVWADRAGADFMSRPPGADAAALAYEAVERAKL 190 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + DV++IDTAGRL N LM + K+IRVLK++DP APH L VLDAT G+NAL Q ++ Sbjct: 191 EGHDVVLIDTAGRLQNKQGLMDELLKVIRVLKKVDPDAPHETLLVLDATVGRNALAQEKI 250 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F G +G++MTK+DGTARGG L+P+ P+ +GVGEG++DL+PF A+ FS + Sbjct: 251 FGNQVGVSGIVMTKLDGTARGGVLVPVARASDSPIKLIGVGEGVDDLQPFDARAFSRSLV 310 Query: 312 GCLD 315 G D Sbjct: 311 GLED 314 >gi|320539370|ref|ZP_08039039.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein [Serratia symbiotica str. Tucson] gi|320030495|gb|EFW12505.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein [Serratia symbiotica str. Tucson] Length = 440 Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 126/295 (42%), Positives = 186/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L T L G + +R+DD + +ELE+ L+ +D+GV +KI+ L Sbjct: 138 FFTRLKHSLLKTKQNLGSGFISLFRGKRIDDDLFDELEEQLLIADVGVETTRKIITTLTQ 197 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + ++L + +P N P+VIL+VGVNGVGKTT IGKL Sbjct: 198 HASRKQLKDAEALYGKLKAEMSEILTNVDRPLNVS-GKAPYVILMVGVNGVGKTTTIGKL 256 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + A+A Sbjct: 257 ARQFQAKGKSVMLAAGDTFRAAAVEQLQVWGERNRIPVVAQHTGADSASVIFDAVQAAKA 316 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 317 RGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDTQAPHEVMLTLDASTGQNAVSQAKL 376 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF A DF Sbjct: 377 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFKADDF 431 >gi|260550345|ref|ZP_05824557.1| signal recognition particle GTPase [Acinetobacter sp. RUH2624] gi|260406657|gb|EEX00138.1| signal recognition particle GTPase [Acinetobacter sp. RUH2624] Length = 368 Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 134/300 (44%), Positives = 196/300 (65%), Gaps = 2/300 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + ++ +G + T +G+ +I I + +DD + EE+E+ L+ +DIGV + I+ L Sbjct: 64 FFGRMKEGLSKTRRNFTDGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLT 123 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + D+ LY + E + +L P KP + D + P+VIL+VGVNGVGKTT IGK Sbjct: 124 ERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGKTTTIGK 183 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K++ G KVMLAAGDTFR+AA +QL+IW +R V G+D+A++ ++AF+ A+ Sbjct: 184 LAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDAFESAR 243 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 AK +DVLI DTAGRLHN S LM + K+ RV++++D APH ++ V+DA TGQNA+ QV+ Sbjct: 244 AKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQ 303 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TG+ +TK+DGTA+GG L I +P+ F+GVGE I+DL PF AK F A + Sbjct: 304 EFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAAL 363 >gi|253686507|ref|YP_003015697.1| signal recognition particle-docking protein FtsY [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753085|gb|ACT11161.1| signal recognition particle-docking protein FtsY [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 495 Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 124/297 (41%), Positives = 190/297 (63%), Gaps = 6/297 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71 + +L + T L G + +++DD + +ELE+ L+ +D+GV +KI+ L Sbjct: 193 FFARLKRSLVKTRQNLGSGFIGLFRGKKIDDDLFDELEEQLLVADVGVETTRKIITSLTE 252 Query: 72 --TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 ++R KD + + + + ++L + P N + P+VIL+VGVNGVGKTT IG Sbjct: 253 HASRRQLKDADT--LFVKLKDEMAEILAKVDAPLNIE-GKTPYVILMVGVNGVGKTTTIG 309 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 K++++ G VMLAAGDTFR+AA++QL++W R + V G+D+A++ ++A + A Sbjct: 310 KMARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVAVVAQHTGADSASVIFDAIQAA 369 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ VDVLI DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q Sbjct: 370 KARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTLDASTGQNAVSQA 429 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF A DF Sbjct: 430 KLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFAIPIRYIGVGEGIEDLRPFKADDF 486 >gi|15603384|ref|NP_246458.1| hypothetical protein PM1519 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721906|gb|AAK03603.1| FtsY [Pasteurella multocida subsp. multocida str. Pm70] Length = 459 Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 128/295 (43%), Positives = 191/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T L G +++DD + EELE+ L+ +D+GV A KI+ L Sbjct: 150 FFSRLVKGLLKTKQNLGAGFRSFFFGKKIDDALFEELEEQLLIADLGVPTATKIINNLTQ 209 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + + +LY ++ + ++L P+++P D S +P+VIL+VGVNGVGKTT IGKL Sbjct: 210 HASHQQLKEADLLYQQLKVEMAEILKPVAQPLVIDQSKKPYVILMVGVNGVGKTTTIGKL 269 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ + G VMLAAGDTFR+AA++QL++W +R S V GSD+A++ ++A + A A Sbjct: 270 ARQFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNSIPVVAQSTGSDSASVIFDAMQSAAA 329 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 330 RHVDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 389 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + I +P+ ++GVGE I DL PF A +F Sbjct: 390 FHEAVGLTGITLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLRPFNADEF 444 >gi|120556651|ref|YP_961002.1| signal recognition particle-docking protein FtsY [Marinobacter aquaeolei VT8] gi|120326500|gb|ABM20815.1| signal recognition particle-docking protein FtsY [Marinobacter aquaeolei VT8] Length = 405 Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 126/301 (41%), Positives = 195/301 (64%), Gaps = 8/301 (2%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVE- 68 +S ++ +G T L G+ D+ S +++D+ + EE+E L+ +D+GV +I++ Sbjct: 101 VSVFERIKQGLGKTRASLTGGLADLFSVGKKIDEDLLEEIETTLLMADVGVTATSEIIDA 160 Query: 69 --ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 E L + KD ++++ L D +H +L +++P D +P+VIL+VGVNGVGKT Sbjct: 161 LTEKLERNQLKDGEALRKALRDE---LHGLLKEVARPLEIDAGKQPYVILMVGVNGVGKT 217 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+KK G VMLAAGDTFR+AA++QL++W +R + V G+D+A++ ++A Sbjct: 218 TTIGKLTKKFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVIFDA 277 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + AQ++ VDV+I DTAGRL N LM + K++RV+K+LD APH V+ VLDA TGQNA Sbjct: 278 IQSAQSRGVDVVIADTAGRLQNKDNLMNELSKVVRVMKKLDESAPHEVMLVLDAGTGQNA 337 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L Q ++F G +G+ +TK+DGTA+GG + I ++P+ ++GVGE DL F A+ Sbjct: 338 LSQAQVFQQAVGVSGITLTKLDGTAKGGIVFAIARQLQLPIRYIGVGEQAEDLRSFDAET 397 Query: 306 F 306 F Sbjct: 398 F 398 >gi|262273591|ref|ZP_06051405.1| signal recognition particle receptor protein FtsY [Grimontia hollisae CIP 101886] gi|262222569|gb|EEY73880.1| signal recognition particle receptor protein FtsY [Grimontia hollisae CIP 101886] Length = 529 Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 194/295 (65%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L +G T + L G + S +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 226 FFARLKRGLQKTKVNLGAGFFGLFSGKKIDDELFEELEEQLLIADVGMDTTTKIINSLTE 285 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K K++ LY + + + +L + KP D P VIL+VGVNGVGKTT IGKL Sbjct: 286 KASRKELKDGEALYGILKQEMADILSKVEKPLEIDRKDGPFVILMVGVNGVGKTTTIGKL 345 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +K+ G VMLAAGDTFR+AA++QL++W +R + + G+D+A++ Y+A + A+A Sbjct: 346 AKQFQQQGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKA 405 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDV+I DTAGRL N + LM + K++RV+K+LD +APH ++ +DA TGQNA+ Q + Sbjct: 406 RNVDVVIADTAGRLQNKANLMEELKKIVRVMKKLDENAPHEIMLTIDAGTGQNAISQARL 465 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ +A +G+ +TK+DGTA+GG + + IP+ ++GVGEGI+DL PFVA++F Sbjct: 466 FNDIAPLSGITLTKLDGTAKGGVIFAVADQFNIPIRYIGVGEGIDDLRPFVAEEF 520 >gi|153002662|ref|YP_001368343.1| signal recognition particle-docking protein FtsY [Shewanella baltica OS185] gi|151367280|gb|ABS10280.1| signal recognition particle-docking protein FtsY [Shewanella baltica OS185] Length = 611 Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 126/292 (43%), Positives = 191/292 (65%), Gaps = 1/292 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L +G TS + G + +++DD + EELE+ L+ +D+GV ++++ L + Sbjct: 308 RLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTTRLIKNLTEQAS 367 Query: 76 AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K + LYD+ E + K L P++ P D ++ P VIL+VGVNGVGKTT IGKL+K+ Sbjct: 368 RKQLKDAEALYDLLREEMQKTLDPVAIPLVPDNANGPFVILMVGVNGVGKTTTIGKLAKQ 427 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G VMLAAGDTFR+AA++QL++W R + G+D+A++ ++A + A+A+KV Sbjct: 428 YQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNDITVIAQHTGADSASVLFDALQAAKARKV 487 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 DVLI DTAGRL N + LM + K++RV+K+LDP PH V+ LDA+TGQNA+ Q ++F Sbjct: 488 DVLIADTAGRLQNKAHLMEELKKVVRVMKKLDPDTPHEVMLTLDASTGQNAISQAQLFQE 547 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G TG+ ++K+DGTA+GG + I IP+ ++GVGE I+DL F +K+F Sbjct: 548 AVGVTGITISKLDGTAKGGVVFAIADKFNIPIRYIGVGEQIDDLRTFNSKEF 599 >gi|304415087|ref|ZP_07395823.1| fused Signal Recognition Particle (SRP) receptor and membrane binding protein/conserved protein [Candidatus Regiella insecticola LSR1] gi|304283060|gb|EFL91487.1| fused Signal Recognition Particle (SRP) receptor and membrane binding protein/conserved protein [Candidatus Regiella insecticola LSR1] Length = 426 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 124/306 (40%), Positives = 193/306 (63%), Gaps = 2/306 (0%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 SN + ++ +L K T + G+ ++ +++DD E+LE+ L+ +DIGV Sbjct: 113 SNVQKQPNKENFFTRLKKSLLKTKQNIGFGLLNLFRGKKIDDDFFEQLEEKLLIADIGVE 172 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 KI++ L K + VLY+ + E + ++L + KP + P VIL+VGVN Sbjct: 173 TTHKIIKSLTEHANRKQLKDAEVLYEKLKETMAEILAKVDKPLETN-GKNPCVILMVGVN 231 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT IGKL+ + G VMLAAGDTFR+AA++QL++W +R + + G+D+A+ Sbjct: 232 GVGKTTTIGKLAYQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQHTGADSAS 291 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++AF+ A+A+ +DVL+ DTAGRL N + LM + K++RV+K++D APH ++ LDA+ Sbjct: 292 VIFDAFQAAKARNIDVLLADTAGRLQNKTDLMIELQKIVRVMKKIDEKAPHEIMLTLDAS 351 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNA+ Q ++FH G TG+ +TK+DG+A+GG + I IP+ ++GVGE I DL Sbjct: 352 TGQNAVNQAKLFHEAVGLTGINLTKLDGSAKGGVIFAIADQFGIPIRYIGVGEAIEDLRL 411 Query: 301 FVAKDF 306 F A DF Sbjct: 412 FKADDF 417 >gi|163803406|ref|ZP_02197281.1| cell division protein FtsY [Vibrio sp. AND4] gi|159172810|gb|EDP57655.1| cell division protein FtsY [Vibrio sp. AND4] Length = 410 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 127/304 (41%), Positives = 199/304 (65%), Gaps = 1/304 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + S +++DD + EELE+ L+ +D+G+ Sbjct: 98 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMETT 157 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+ L K D+ LY + E + ++L + +P D S P+VIL+VGVNGV Sbjct: 158 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILAKVEQPLEIDSSKTPYVILMVGVNGV 217 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ + G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 218 GKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 277 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+A+ VDV+I DTAGRL N + LM + K++RV+K++D APH ++ LDA TG Sbjct: 278 FDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 337 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI+DL PF Sbjct: 338 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIDDLRPFE 397 Query: 303 AKDF 306 ++F Sbjct: 398 TQEF 401 >gi|126641975|ref|YP_001084959.1| cell division protein [Acinetobacter baumannii ATCC 17978] Length = 301 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 134/296 (45%), Positives = 194/296 (65%), Gaps = 2/296 (0%) Query: 17 LTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 + +G + T +G+ +I I + +DD + EE+E+ L+ +DIGV + I+ L + Sbjct: 1 MKEGLSKTRRNFTDGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLTERTA 60 Query: 76 AKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 D+ LY + E + +L P KP + D + P+VIL+VGVNGVGKTT IGKL+K+ Sbjct: 61 RGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGKTTTIGKLAKR 120 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 + G KVMLAAGDTFR+AA +QL+IW +R V G+D+A++ ++AF+ A+AK + Sbjct: 121 LQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDAFESARAKGI 180 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 DVLI DTAGRLHN S LM + K+ RV++++D APH ++ V+DA TGQNA+ QV+ F Sbjct: 181 DVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQEFDQ 240 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 G TG+ +TK+DGTA+GG L I +P+ F+GVGE I+DL PF AK F A + Sbjct: 241 AVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAAL 296 >gi|304412286|ref|ZP_07393894.1| signal recognition particle-docking protein FtsY [Shewanella baltica OS183] gi|307306070|ref|ZP_07585815.1| signal recognition particle-docking protein FtsY [Shewanella baltica BA175] gi|304349321|gb|EFM13731.1| signal recognition particle-docking protein FtsY [Shewanella baltica OS183] gi|306910943|gb|EFN41370.1| signal recognition particle-docking protein FtsY [Shewanella baltica BA175] Length = 576 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 126/292 (43%), Positives = 191/292 (65%), Gaps = 1/292 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L +G TS + G + +++DD + EELE+ L+ +D+GV ++++ L + Sbjct: 273 RLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTTRLIKNLTEQAS 332 Query: 76 AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K + LYD+ E + K L P++ P D ++ P VIL+VGVNGVGKTT IGKL+K+ Sbjct: 333 RKQLKDAEALYDLLREEMQKTLDPVAIPLVPDNANGPFVILMVGVNGVGKTTTIGKLAKQ 392 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G VMLAAGDTFR+AA++QL++W R + G+D+A++ ++A + A+A+KV Sbjct: 393 YQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNDITVIAQHTGADSASVLFDALQAAKARKV 452 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 DVLI DTAGRL N + LM + K++RV+K+LDP PH V+ LDA+TGQNA+ Q ++F Sbjct: 453 DVLIADTAGRLQNKAHLMEELKKVVRVMKKLDPETPHEVMLTLDASTGQNAISQAQLFQE 512 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G TG+ ++K+DGTA+GG + I IP+ ++GVGE I+DL F +K+F Sbjct: 513 AVGVTGITISKLDGTAKGGVVFAIADKFNIPIRYIGVGEQIDDLRTFNSKEF 564 >gi|330898961|gb|EGH30380.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. japonica str. M301072PT] Length = 494 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 128/298 (42%), Positives = 190/298 (63%), Gaps = 2/298 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L +G + TS + EG+ + + + +DD + EE+E L+ +D+GV I++ Sbjct: 186 VGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIKS 245 Query: 70 LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L K K ++ + LY + + ML P+ +P HRP VILVVGVNG GKTT I Sbjct: 246 LTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKSEHRPFVILVVGVNGAGKTTTI 305 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + Sbjct: 306 GKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQA 365 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q Sbjct: 366 AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQ 425 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A+ F Sbjct: 426 AKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 483 >gi|126172425|ref|YP_001048574.1| signal recognition particle-docking protein FtsY [Shewanella baltica OS155] gi|125995630|gb|ABN59705.1| signal recognition particle-docking protein FtsY [Shewanella baltica OS155] Length = 621 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 126/292 (43%), Positives = 191/292 (65%), Gaps = 1/292 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L +G TS + G + +++DD + EELE+ L+ +D+GV ++++ L + Sbjct: 318 RLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTTRLIKNLTEQAS 377 Query: 76 AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K + LYD+ E + K L P++ P D ++ P VIL+VGVNGVGKTT IGKL+K+ Sbjct: 378 RKQLKDAEALYDLLREEMQKTLDPVAIPLVPDNANGPFVILMVGVNGVGKTTTIGKLAKQ 437 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G VMLAAGDTFR+AA++QL++W R + G+D+A++ ++A + A+A+KV Sbjct: 438 YQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNDITVIAQHTGADSASVLFDALQAAKARKV 497 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 DVLI DTAGRL N + LM + K++RV+K+LDP PH V+ LDA+TGQNA+ Q ++F Sbjct: 498 DVLIADTAGRLQNKAHLMEELKKVVRVMKKLDPDTPHEVMLTLDASTGQNAISQAQLFQE 557 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G TG+ ++K+DGTA+GG + I IP+ ++GVGE I+DL F +K+F Sbjct: 558 AVGVTGITISKLDGTAKGGVVFAIADKFNIPIRYIGVGEQIDDLRTFNSKEF 609 >gi|268590802|ref|ZP_06125023.1| cell division protein [Providencia rettgeri DSM 1131] gi|291313582|gb|EFE54035.1| cell division protein [Providencia rettgeri DSM 1131] Length = 627 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 131/295 (44%), Positives = 191/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T L G + S +++DD + EELE+ L+ +D+GV +KI++ L Sbjct: 325 FFARLKKGLLKTRQNLGSGFFGLFSGKKIDDDLFEELEEQLLIADVGVDTTRKIIDNLTA 384 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K++ LY + E + +L + KP + +P+VIL+VGVNGVGKTT IGKL Sbjct: 385 HASRKELKDAEALYGKLREEMSDILAKVDKPLVIE-DKKPYVILMVGVNGVGKTTTIGKL 443 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D A++ ++A + AQA Sbjct: 444 ARQYQSEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVVAQHTGADPASVIFDAIQSAQA 503 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K VDVLI DTAGRL N S LM + K++RV+K+LD +APH ++ LDA+TGQNA+ Q ++ Sbjct: 504 KGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDENAPHEIMLTLDASTGQNAVSQAKL 563 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G TG+ +TK+DGTA+GG + I IP+ ++G+GEGI DL PF A DF Sbjct: 564 FDDAVGLTGITLTKLDGTAKGGVIFSIADQFGIPIRYIGIGEGIEDLRPFKADDF 618 >gi|330957085|gb|EGH57345.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. maculicola str. ES4326] Length = 506 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 128/305 (41%), Positives = 193/305 (63%), Gaps = 2/305 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62 Q+ + + + +L +G + TS + EG+ + + + +DD + EE+E L+ +D+GV Sbjct: 191 QEPENAKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 250 Query: 63 AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 I++ L K K ++ + LY + + ML P+ +P H+P VILVVGVNG Sbjct: 251 TSVIIQSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNG 310 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 311 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 370 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA T Sbjct: 371 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 430 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F Sbjct: 431 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 490 Query: 302 VAKDF 306 A+ F Sbjct: 491 EAEPF 495 >gi|160872800|ref|ZP_02062932.1| signal recognition particle-docking protein FtsY [Rickettsiella grylli] gi|159121599|gb|EDP46937.1| signal recognition particle-docking protein FtsY [Rickettsiella grylli] Length = 329 Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 126/310 (40%), Positives = 198/310 (63%), Gaps = 6/310 (1%) Query: 3 NQKVASESLS----WIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSD 57 N + +ESL ++ ++ T + E + ++ +++D + +E+ DLL+ +D Sbjct: 2 NVREGNESLERKDHFLYRIKNSLLKTRHQFTENLAHLLFGKKKIDAELIDEIVDLLLMAD 61 Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILV 116 +G V + I++ L K ++ +V++DV + + ++L P P D +H+P VILV Sbjct: 62 VGSTVTEAIIQRLTVKLERNHLTDGQVIWDVLKQQLGELLQPCEAPLMIDSTHKPMVILV 121 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGKL+ + G KVMLAAGDTFR+AA +QL IWA+R + G+ Sbjct: 122 VGVNGVGKTTSIGKLAYYLKKQGKKVMLAAGDTFRAAATEQLTIWAERNQIPIIAQHQGA 181 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D+A++ Y+AF+ A+A+ +DVLI DTAGR H + LM + K+ +V+ +LD APH ++ + Sbjct: 182 DSASVIYDAFQAAKARNIDVLIADTAGRFHTKNNLMQELQKIKKVMGKLDVSAPHEIMLI 241 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDA TGQNAL Q ++FH G TGL++TK+DGTA+GG + I +P+ F+G+GE ++ Sbjct: 242 LDANTGQNALMQAQVFHEALGLTGLMLTKLDGTAKGGVIFAIAEKLGLPIRFVGLGEAMS 301 Query: 297 DLEPFVAKDF 306 D+ F AK+F Sbjct: 302 DIHVFSAKEF 311 >gi|254784500|ref|YP_003071928.1| signal recognition particle-docking protein FtsY [Teredinibacter turnerae T7901] gi|242667494|gb|ACS93531.1| signal recognition particle-docking protein FtsY [Teredinibacter turnerae T7901] Length = 334 Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 133/301 (44%), Positives = 202/301 (67%), Gaps = 2/301 (0%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKI 66 +E +S+ ++ +G + TS +L G+ ++ ++ +DD + EE+E LL+ +D+GV I Sbjct: 26 TEKVSFFTRIKQGLSRTSNQLSGGLASLLLGKKAIDDELLEEIETLLLMADVGVEATTDI 85 Query: 67 VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 +++L + K ++ LY + + + +L+ + P + + + +P VILVVGVNGVGKT Sbjct: 86 IDDLTARVARKQLADSDALYAALRQSLADLLLDVEAPLDVECAQKPFVILVVGVNGVGKT 145 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K+ + G VMLAAGDTFR+AA++QL++W +R V G+D+A++ Y+A Sbjct: 146 TTIGKLAKRFQNQGKSVMLAAGDTFRAAAVEQLQVWGERNKVPVVAQHTGADSASVIYDA 205 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + AQA+++DV+I DTAGRLHN S LM + K+ RV+ +LD APH VL VLDA TGQNA Sbjct: 206 VQSAQARQIDVVIADTAGRLHNKSNLMEELAKVKRVMAKLDDSAPHEVLLVLDAGTGQNA 265 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L Q F AG TGL +TK+DGTA+GG + + + +PV ++GVGEGI+DL+PF A Sbjct: 266 LSQAGHFKEAAGVTGLALTKLDGTAKGGIIFALSKQYGLPVRYIGVGEGIDDLQPFQATS 325 Query: 306 F 306 F Sbjct: 326 F 326 >gi|229587138|ref|YP_002845639.1| Signal recognition particle-docking protein FtsY [Rickettsia africae ESF-5] gi|228022188|gb|ACP53896.1| Signal recognition particle-docking protein FtsY [Rickettsia africae ESF-5] Length = 303 Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 130/303 (42%), Positives = 192/303 (63%), Gaps = 3/303 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 +S KL + + TS K+ EGI I ++LD G E LE+LLI SD+ V V I+EE Sbjct: 2 ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAGTLEALEELLISSDMSVLVVTNIIEEF 61 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++ K++ V +++LI + L + PF ++ +VILV GVNG GKTT IGK Sbjct: 62 KKVKFDKEIDSDTVKEALAKLIEQQLSKSAIPFTLS-ENKLNVILVCGVNGAGKTTTIGK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ S G KV +AA DTFR+AA++QL WADR +A + E +D A++AY +++ Sbjct: 121 LAAMYSAQGKKVAVAACDTFRAAAVNQLSTWADRANALLITGEESADPASVAYRGMEESI 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249 + +++L IDTAGRLHN LM + K+++V+K+LD +AP HS+L V+DA TGQN QV Sbjct: 181 KQNINILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSIL-VIDAITGQNTYNQV 239 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F+ TGLI+TK+DG+A+ G ++ +V +P+YF+G+GE I DL+ F DF+ Sbjct: 240 EHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNQHDFARN 299 Query: 310 ITG 312 + G Sbjct: 300 LVG 302 >gi|304311581|ref|YP_003811179.1| Cell division protein, SRP docking protein [gamma proteobacterium HdN1] gi|301797314|emb|CBL45534.1| Cell division protein, SRP docking protein [gamma proteobacterium HdN1] Length = 416 Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 133/305 (43%), Positives = 190/305 (62%), Gaps = 16/305 (5%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 S+ ++ +G + T E + +++ ++ +D + EE+E L+ +D+GV+ Q+IV L Sbjct: 110 SFFSRVKRGLSRTRSGFTEAMASLLAGKKAIDADLLEEIETQLLMADVGVSATQRIVTAL 169 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSH----RPHVILVVGVNG 121 K VS +R L D L H + L+ + W +P VIL+VGVNG Sbjct: 170 TQK-----VS-RRELVDSDALYHALQQELAALLSGHAEPWQLGKTAEGKPRVILMVGVNG 223 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT IGKL+K++ G +VMLAAGDTFR+AA++QL++W R V G+D+A++ Sbjct: 224 VGKTTTIGKLAKRLQIEGKQVMLAAGDTFRAAAVEQLQVWGQRNEIAVVAQHTGADSASV 283 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A AKKVDVLI DTAGRLH S LM + K+ RV+++LDP APH VL VLDA T Sbjct: 284 IFDALQSATAKKVDVLIADTAGRLHTKSNLMEELKKVKRVMQKLDPQAPHEVLLVLDAGT 343 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL Q F+ G TG+++TK+DGTA+GG + I IP+ +GVGE I+DL PF Sbjct: 344 GQNALSQATQFNEAVGVTGIVLTKLDGTAKGGIVFAIAEKTGIPIRLIGVGETIDDLRPF 403 Query: 302 VAKDF 306 + F Sbjct: 404 EPQQF 408 >gi|217975238|ref|YP_002359989.1| signal recognition particle-docking protein FtsY [Shewanella baltica OS223] gi|217500373|gb|ACK48566.1| signal recognition particle-docking protein FtsY [Shewanella baltica OS223] Length = 615 Score = 246 bits (629), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 126/292 (43%), Positives = 191/292 (65%), Gaps = 1/292 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L +G TS + G + +++DD + EELE+ L+ +D+GV ++++ L + Sbjct: 312 RLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTTRLIKNLTEQAS 371 Query: 76 AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K + LYD+ E + K L P++ P D ++ P VIL+VGVNGVGKTT IGKL+K+ Sbjct: 372 RKQLKDAEALYDLLREEMQKTLDPVAIPLVPDNANGPFVILMVGVNGVGKTTTIGKLAKQ 431 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G VMLAAGDTFR+AA++QL++W R + G+D+A++ ++A + A+A+KV Sbjct: 432 YQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNDITVIAQHTGADSASVLFDALQAAKARKV 491 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 DVLI DTAGRL N + LM + K++RV+K+LDP PH V+ LDA+TGQNA+ Q ++F Sbjct: 492 DVLIADTAGRLQNKAHLMEELKKVVRVMKKLDPDTPHEVMLTLDASTGQNAISQAQLFQE 551 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G TG+ ++K+DGTA+GG + I IP+ ++GVGE I+DL F +K+F Sbjct: 552 AVGVTGITISKLDGTAKGGVVFAIADKFNIPIRYIGVGEQIDDLRTFNSKEF 603 >gi|254508809|ref|ZP_05120920.1| cell division protein FtsY [Vibrio parahaemolyticus 16] gi|219548266|gb|EED25280.1| cell division protein FtsY [Vibrio parahaemolyticus 16] Length = 412 Score = 246 bits (629), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 128/296 (43%), Positives = 196/296 (66%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + A T + G + +++DD + EELE+ L+ +D+G+ KI++ L Sbjct: 108 SFFARLKRSLARTKANIGAGFFGLFKGKQIDDDLFEELEEQLLIADVGMDTTTKIIDSLT 167 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K +++ LY + E + ++L + KP D S P+VIL+VGVNGVGKTT IGK Sbjct: 168 EKASRQELKDGEALYGLLKEEMAEILSTVEKPLEVDTSKTPYVILMVGVNGVGKTTTIGK 227 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + V G+D+A++ Y+A + A+ Sbjct: 228 LAKQFQAEGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVIYDAIESAK 287 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 AK VDV+I DTAGRL N S LM + K++RV++++D APH ++ LDA TGQNA+ Q + Sbjct: 288 AKGVDVVIADTAGRLQNKSNLMEELRKIVRVMQKVDGSAPHEIMLTLDAGTGQNAISQAK 347 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + + +IP+ ++GVGEGI+DL PF ++F Sbjct: 348 LFSDVAPLTGITLTKLDGTAKGGVIFALADQFQIPIRYIGVGEGIDDLRPFETQEF 403 >gi|94499827|ref|ZP_01306363.1| signal recognition particle-docking protein FtsY [Oceanobacter sp. RED65] gi|94428028|gb|EAT13002.1| signal recognition particle-docking protein FtsY [Oceanobacter sp. RED65] Length = 359 Score = 246 bits (629), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 123/296 (41%), Positives = 190/296 (64%), Gaps = 2/296 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + ++ G + T L EG+ D++ + +D+ + E++E L+ +DIG+ Q I+++L Sbjct: 55 FFARIKAGLSRTRSGLSEGLGDLLLGKKEIDEDLLEDIETQLLMADIGINATQAIIDDLT 114 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + K++ L + + + + +L P P S +P VIL+VGVNGVGKTT IGK Sbjct: 115 ERSSRKELKDSEALLEALKQHLKDILEPCHAPLEIPQSDKPFVILMVGVNGVGKTTTIGK 174 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 ++K+ G VMLAAGDTFR+AA++QL+ W +R V G+D+A++ Y+A + AQ Sbjct: 175 MAKRFQSQGKSVMLAAGDTFRAAAVEQLQTWGERNKVPVVAQHTGADSASVIYDAVQSAQ 234 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 +K VDV+I DTAGRL N + LM + K++RV+++LD APH V+ VLDA TGQNAL Q + Sbjct: 235 SKGVDVVIADTAGRLQNKANLMQELEKVVRVMRKLDDTAPHEVMLVLDAGTGQNALSQAK 294 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F G + L ++K+DGTA+GG + I ++PV F+GVGE I+DL PF ++F Sbjct: 295 IFQEAVGVSSLTLSKLDGTAKGGVIFAIAKELQLPVRFIGVGEQIDDLRPFNHEEF 350 >gi|297180323|gb|ADI16541.1| hypothetical protein [uncultured bacterium HF4000_009C18] Length = 304 Score = 246 bits (628), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 125/281 (44%), Positives = 182/281 (64%), Gaps = 1/281 (0%) Query: 31 GITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL-TKRYAKDVSVQRVLYDVS 89 G+ D+I +++D+ + ELED LI+SD+GV A+++ E+ TK K V + S Sbjct: 21 GLNDLIFKKKIDENMLNELEDFLIQSDVGVESAKELREKFANTKVNPKTVEKDEIFKIFS 80 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 +H++L PL K ++P VIL+ GVNGVGKTT IGKL K + K++L A DT Sbjct: 81 NYVHEILKPLEKNLENINKNKPCVILIAGVNGVGKTTTIGKLGKILGQNNKKIVLGAADT 140 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+AA+ QL++WA R +AD + S+ G+D A++AY+A A+ D L+IDTAGRL N Sbjct: 141 FRAAAVSQLEVWAKRINADIIKSDEGADPASVAYKALDHAKKNNFDYLLIDTAGRLQNKK 200 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 LM K+ +VLK++D +APH +LDATTGQNA+ QVE F ++ TG+IMTK+DGT Sbjct: 201 NLMDEFKKITKVLKKIDSNAPHETFLILDATTGQNAISQVEEFKKISPITGIIMTKLDGT 260 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 A+GG L+ I K+P+ L +GE +DL+ F ++ FS + Sbjct: 261 AKGGILLAIGKKFKLPIIALCMGEKEDDLQTFNSEYFSNAL 301 >gi|320326373|gb|EFW82426.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. glycinea str. B076] Length = 498 Score = 246 bits (628), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 128/305 (41%), Positives = 192/305 (62%), Gaps = 2/305 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62 Q+ + + + +L +G + TS + EG+ + + + +DD + EE+E L+ +D+GV Sbjct: 183 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 242 Query: 63 AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 I+ L K K ++ + LY + + ML P+ +P H+P VILVVGVNG Sbjct: 243 TSVIINSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKVEHKPFVILVVGVNG 302 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 303 AGKTTTIGKLAKKLQLGGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 362 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA T Sbjct: 363 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 422 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F Sbjct: 423 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 482 Query: 302 VAKDF 306 A+ F Sbjct: 483 EAEPF 487 >gi|160877397|ref|YP_001556713.1| signal recognition particle-docking protein FtsY [Shewanella baltica OS195] gi|160862919|gb|ABX51453.1| signal recognition particle-docking protein FtsY [Shewanella baltica OS195] gi|315269601|gb|ADT96454.1| signal recognition particle-docking protein FtsY [Shewanella baltica OS678] Length = 540 Score = 246 bits (628), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 126/292 (43%), Positives = 191/292 (65%), Gaps = 1/292 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L +G TS + G + +++DD + EELE+ L+ +D+GV ++++ L + Sbjct: 237 RLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTTRLIKNLTEQAS 296 Query: 76 AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K + LYD+ E + K L P++ P D ++ P VIL+VGVNGVGKTT IGKL+K+ Sbjct: 297 RKQLKDAEALYDLLREEMQKTLDPVAIPLVPDNANGPFVILMVGVNGVGKTTTIGKLAKQ 356 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G VMLAAGDTFR+AA++QL++W R + G+D+A++ ++A + A+A+KV Sbjct: 357 YQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNDITVIAQHTGADSASVLFDALQAAKARKV 416 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 DVLI DTAGRL N + LM + K++RV+K+LDP PH V+ LDA+TGQNA+ Q ++F Sbjct: 417 DVLIADTAGRLQNKAHLMEELKKVVRVMKKLDPDTPHEVMLTLDASTGQNAISQAQLFQE 476 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G TG+ ++K+DGTA+GG + I IP+ ++GVGE I+DL F +K+F Sbjct: 477 AVGVTGITISKLDGTAKGGVVFAIADKFNIPIRYIGVGEQIDDLRTFNSKEF 528 >gi|328472443|gb|EGF43309.1| signal recognition particle-docking protein FtsY [Vibrio parahaemolyticus 10329] Length = 403 Score = 246 bits (628), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 128/304 (42%), Positives = 197/304 (64%), Gaps = 1/304 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + S +++DD + EELE+ L+ +D+G+ Sbjct: 91 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTT 150 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+ L K D+ LY + E + ++L + +P + D S P+VIL+VGVNGV Sbjct: 151 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLDIDSSKTPYVILMVGVNGV 210 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 211 GKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 270 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N + LM + K++RV+K++D APH ++ LDA TG Sbjct: 271 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 330 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF Sbjct: 331 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFE 390 Query: 303 AKDF 306 ++F Sbjct: 391 TQEF 394 >gi|300721685|ref|YP_003710961.1| cell division protein [Xenorhabdus nematophila ATCC 19061] gi|297628178|emb|CBJ88733.1| cell division protein: membrane binding (N-terminal); GTPase domain (C-terminal) [Xenorhabdus nematophila ATCC 19061] Length = 465 Score = 246 bits (628), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 130/307 (42%), Positives = 192/307 (62%), Gaps = 2/307 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 +S ++ + +L + T L G + +++DD + EELE+ L+ +D+GV Sbjct: 151 LSKEQERPSKEGFFTRLKRSLVKTRQNLGSGFLSLFRGKKIDDELFEELEEQLLIADVGV 210 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 KI+ L K++ LY + E + +L+ + KP + P+VIL+VGV Sbjct: 211 ETTSKIITSLTAHASRKELKDAEALYSKLKEEMSDILVKVDKPLEIE-GKSPYVILMVGV 269 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W DR V G+D A Sbjct: 270 NGVGKTTTIGKLARQYQSQGKSVMLAAGDTFRAAAVEQLQVWGDRNKIPVVAQHTGADPA 329 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+AK VD+LI DTAGRL N S LM + K++RV+K+LD APH ++ LDA Sbjct: 330 SVIFDAIQSAKAKGVDILIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEIMLTLDA 389 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++FH G TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL Sbjct: 390 STGQNAVSQAKLFHEAVGLTGISLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLR 449 Query: 300 PFVAKDF 306 PF A DF Sbjct: 450 PFKADDF 456 >gi|221133909|ref|ZP_03560214.1| signal recognition particle GTPase [Glaciecola sp. HTCC2999] Length = 367 Score = 246 bits (628), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 127/299 (42%), Positives = 187/299 (62%), Gaps = 6/299 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71 + L + T + GI D+ R +DD + E+LE L+ +D+G+ Q I+E L Sbjct: 61 FFSSLAAKLSRTKESIGSGIADLFVGRSIDDELYEDLETQLLVADVGMDTTQNIIEHLTQ 120 Query: 72 -TKRYA---KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 TKR + + + + EL+ + PL P + P VIL+VGVNGVGKTT Sbjct: 121 STKRSTLKNGEALLGELKAYMGELLTNIEAPLI-PVVPEGKKGPFVILMVGVNGVGKTTT 179 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGK++K+ G KVMLAAGDTFR+AA++QL++W +R V G+D+A++ Y+A + Sbjct: 180 IGKMAKQFQQDGKKVMLAAGDTFRAAAVEQLQVWGERNDIPVVAQHTGADSASVLYDAIQ 239 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 AQAK +DVLI DTAGRL N LM + K++RV+++++P APH ++ +DA TGQNA+ Sbjct: 240 SAQAKNIDVLIADTAGRLQNKDYLMQELEKVVRVIRKINPDAPHEIMLTIDAGTGQNAIS 299 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++FH G TG+ ++K+DGTA+GG + I IPV ++GVGE I+DL PF A +F Sbjct: 300 QAKLFHDAVGLTGITLSKLDGTAKGGVIFSIADQFSIPVRYIGVGEAIDDLRPFQATEF 358 >gi|330965439|gb|EGH65699.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. actinidiae str. M302091] Length = 514 Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 127/298 (42%), Positives = 190/298 (63%), Gaps = 2/298 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L +G + TS + EG+ + + + +DD + EE+E L+ +D+GV I++ Sbjct: 206 VGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIKS 265 Query: 70 LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L K K ++ + LY + + ML P+ +P H+P VILVVGVNG GKTT I Sbjct: 266 LTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNGAGKTTTI 325 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + Sbjct: 326 GKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQA 385 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q Sbjct: 386 AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQ 445 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A+ F Sbjct: 446 AKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 503 >gi|71736424|ref|YP_276881.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556977|gb|AAZ36188.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. phaseolicola 1448A] Length = 500 Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 128/305 (41%), Positives = 192/305 (62%), Gaps = 2/305 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62 Q+ + + + +L +G + TS + EG+ + + + +DD + EE+E L+ +D+GV Sbjct: 185 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 244 Query: 63 AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 I+ L K K ++ + LY + + ML P+ +P H+P VILVVGVNG Sbjct: 245 TSVIINSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKVEHKPFVILVVGVNG 304 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 305 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 364 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA T Sbjct: 365 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 424 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F Sbjct: 425 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 484 Query: 302 VAKDF 306 A+ F Sbjct: 485 EAEPF 489 >gi|319428376|gb|ADV56450.1| signal recognition particle-docking protein FtsY [Shewanella putrefaciens 200] Length = 480 Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 127/292 (43%), Positives = 191/292 (65%), Gaps = 1/292 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L +G TS + G + +++DD + EELE+ L+ +D+GV +++ +L Sbjct: 177 RLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTTRLINKLTEHAS 236 Query: 76 AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K + LYD+ + + K L P++ P + ++ P VIL+VGVNGVGKTT IGKL+K+ Sbjct: 237 RKQLKDAEALYDLLRDELQKTLDPVAIPLVPNNANGPFVILMVGVNGVGKTTTIGKLAKQ 296 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G VMLAAGDTFR+AA++QL++W R V G+D+A++ ++A + A+A+KV Sbjct: 297 YQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNDITVVAQHTGADSASVLFDALQAAKARKV 356 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 DVLI DTAGRL N + LM + K++RV+K+LDP APH V+ LDA+TGQNA+ Q ++F Sbjct: 357 DVLIADTAGRLQNKAHLMEELKKVVRVMKKLDPEAPHEVMLTLDASTGQNAISQAQLFQE 416 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G TGL ++K+DGTA+GG + I IP+ ++GVGE I+DL F +K+F Sbjct: 417 AVGVTGLTISKLDGTAKGGVVFAIADKFNIPIRYIGVGEQIDDLRTFNSKEF 468 >gi|146291397|ref|YP_001181821.1| signal recognition particle-docking protein FtsY [Shewanella putrefaciens CN-32] gi|145563087|gb|ABP74022.1| signal recognition particle-docking protein FtsY [Shewanella putrefaciens CN-32] Length = 482 Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 127/292 (43%), Positives = 191/292 (65%), Gaps = 1/292 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L +G TS + G + +++DD + EELE+ L+ +D+GV +++ +L Sbjct: 179 RLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTTRLINKLTEHAS 238 Query: 76 AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K + LYD+ + + K L P++ P + ++ P VIL+VGVNGVGKTT IGKL+K+ Sbjct: 239 RKQLKDAEALYDLLRDELQKTLDPVAIPLVPNNANGPFVILMVGVNGVGKTTTIGKLAKQ 298 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G VMLAAGDTFR+AA++QL++W R V G+D+A++ ++A + A+A+KV Sbjct: 299 YQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNDITVVAQHTGADSASVLFDALQAAKARKV 358 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 DVLI DTAGRL N + LM + K++RV+K+LDP APH V+ LDA+TGQNA+ Q ++F Sbjct: 359 DVLIADTAGRLQNKAHLMEELKKVVRVMKKLDPEAPHEVMLTLDASTGQNAISQAQLFQE 418 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G TGL ++K+DGTA+GG + I IP+ ++GVGE I+DL F +K+F Sbjct: 419 AVGVTGLTISKLDGTAKGGVVFAIADKFNIPIRYIGVGEQIDDLRTFNSKEF 470 >gi|289648495|ref|ZP_06479838.1| cell division transporter substrate-binding protein FtsY [Pseudomonas syringae pv. aesculi str. 2250] Length = 494 Score = 246 bits (627), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 128/305 (41%), Positives = 193/305 (63%), Gaps = 2/305 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62 Q+ + + + +L +G + TS + EG+ + + + +DD + EE+E L+ +D+GV Sbjct: 179 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 238 Query: 63 AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 I++ L K K ++ + LY + + ML P+ +P H+P VILVVGVNG Sbjct: 239 TSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNG 298 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 299 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 358 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA T Sbjct: 359 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 418 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F Sbjct: 419 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 478 Query: 302 VAKDF 306 A+ F Sbjct: 479 EAEPF 483 >gi|127514534|ref|YP_001095731.1| signal recognition particle-docking protein FtsY [Shewanella loihica PV-4] gi|126639829|gb|ABO25472.1| signal recognition particle-docking protein FtsY [Shewanella loihica PV-4] Length = 561 Score = 246 bits (627), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 127/295 (43%), Positives = 189/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L +G TS + G + +++DD + EELE+ L+ +D+GV +++ L Sbjct: 255 FFARLKRGLKRTSENIGSGFIGLFKGKKIDDELFEELEEQLLIADVGVETTSRLIASLTE 314 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K + LY++ E + K L P+S P + S P VIL+VGVNGVGKTT IGKL Sbjct: 315 QASRKQLKDGEALYELMREEMQKTLEPVSIPLVPENSEGPFVILMVGVNGVGKTTTIGKL 374 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +K+ G VMLAAGDTFR+AA++QL++W R + G+D+A++ ++A + A+A Sbjct: 375 AKQYQQQGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVIAQHTGADSASVLFDALQAARA 434 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +K+D+LI DTAGRL N + LM + K++RV+K+ D APH V+ LDA+TGQNA+ Q ++ Sbjct: 435 RKIDILIADTAGRLQNKAHLMDELKKVVRVMKKQDESAPHEVMLTLDASTGQNAISQAQL 494 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G TG+ M+K+DGTA+GG + I IP+ +GVGE I+DL PF AKDF Sbjct: 495 FKEAVGVTGITMSKLDGTAKGGVIFAIADKFGIPIRHIGVGEQIDDLRPFDAKDF 549 >gi|289624656|ref|ZP_06457610.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|298485261|ref|ZP_07003354.1| signal recognition particle docking protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160249|gb|EFI01277.1| signal recognition particle docking protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330871132|gb|EGH05841.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 496 Score = 246 bits (627), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 128/305 (41%), Positives = 193/305 (63%), Gaps = 2/305 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62 Q+ + + + +L +G + TS + EG+ + + + +DD + EE+E L+ +D+GV Sbjct: 181 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 240 Query: 63 AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 I++ L K K ++ + LY + + ML P+ +P H+P VILVVGVNG Sbjct: 241 TSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNG 300 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 301 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 360 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA T Sbjct: 361 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 420 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F Sbjct: 421 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 480 Query: 302 VAKDF 306 A+ F Sbjct: 481 EAEPF 485 >gi|323492926|ref|ZP_08098066.1| signal recognition particle-docking protein FtsY [Vibrio brasiliensis LMG 20546] gi|323312819|gb|EGA65943.1| signal recognition particle-docking protein FtsY [Vibrio brasiliensis LMG 20546] Length = 404 Score = 246 bits (627), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 128/296 (43%), Positives = 196/296 (66%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + A T + G + +++DD + EELE+ L+ +D+G+ KI+E L Sbjct: 100 SFFARLKRSLARTKANIGAGFFGLFKGKQIDDDLFEELEEQLLIADVGMDTTLKIIENLT 159 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K +++ LY + E + ++L + KP D S P+VIL+VGVNGVGKTT IGK Sbjct: 160 EKASRQELKDGEALYGLLKEEMAEILSNVEKPLEVDSSKAPYVILMVGVNGVGKTTTIGK 219 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + V G+D+A++ Y+A + A+ Sbjct: 220 LAKQFQAEGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVIYDAIESAK 279 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 AK VDV+I DTAGRL N + LM + K++RV++++D APH ++ LDA TGQNA+ Q + Sbjct: 280 AKGVDVVIADTAGRLQNKANLMEELRKIVRVMQKVDGSAPHEIMLTLDAGTGQNAISQAK 339 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + + +IP+ ++GVGEGI+DL PF ++F Sbjct: 340 LFSDVAPLTGITLTKLDGTAKGGVIFALADQFQIPIRYIGVGEGIDDLRPFETQEF 395 >gi|257482993|ref|ZP_05637034.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011768|gb|EGH91824.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 496 Score = 246 bits (627), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 128/305 (41%), Positives = 193/305 (63%), Gaps = 2/305 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62 Q+ + + + +L +G + TS + EG+ + + + +DD + EE+E L+ +D+GV Sbjct: 181 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 240 Query: 63 AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 I++ L K K ++ + LY + + ML P+ +P H+P VILVVGVNG Sbjct: 241 TSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNG 300 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 301 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 360 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA T Sbjct: 361 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 420 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F Sbjct: 421 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 480 Query: 302 VAKDF 306 A+ F Sbjct: 481 EAEPF 485 >gi|260899650|ref|ZP_05908045.1| cell division protein FtsY [Vibrio parahaemolyticus AQ4037] gi|308106736|gb|EFO44276.1| cell division protein FtsY [Vibrio parahaemolyticus AQ4037] Length = 411 Score = 246 bits (627), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 128/304 (42%), Positives = 196/304 (64%), Gaps = 1/304 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + S +++DD + EELE+ L+ +D+G+ Sbjct: 99 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTT 158 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+ L K D+ LY + E + ++L + +P D S P+VIL+VGVNGV Sbjct: 159 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGV 218 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 219 GKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 278 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N + LM + K++RV+K++D APH ++ LDA TG Sbjct: 279 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 338 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF Sbjct: 339 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFE 398 Query: 303 AKDF 306 ++F Sbjct: 399 TQEF 402 >gi|260361295|ref|ZP_05774400.1| cell division protein FtsY [Vibrio parahaemolyticus K5030] gi|308111830|gb|EFO49370.1| cell division protein FtsY [Vibrio parahaemolyticus K5030] Length = 407 Score = 246 bits (627), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 128/304 (42%), Positives = 196/304 (64%), Gaps = 1/304 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + S +++DD + EELE+ L+ +D+G+ Sbjct: 95 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTT 154 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+ L K D+ LY + E + ++L + +P D S P+VIL+VGVNGV Sbjct: 155 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGV 214 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 215 GKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 274 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N + LM + K++RV+K++D APH ++ LDA TG Sbjct: 275 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 334 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF Sbjct: 335 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFE 394 Query: 303 AKDF 306 ++F Sbjct: 395 TQEF 398 >gi|149909415|ref|ZP_01898070.1| signal recognition particle-docking protein FtsY [Moritella sp. PE36] gi|149807525|gb|EDM67474.1| signal recognition particle-docking protein FtsY [Moritella sp. PE36] Length = 451 Score = 246 bits (627), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 192/295 (65%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L +G + T + G + +DD + EELE+ L+ +D+GVA ++I++ L Sbjct: 146 FFTRLKRGLSRTKGNIGSGFKSFFRGKHIDDDLFEELEEQLLIADLGVATTKRIIDNLTQ 205 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K + LYD+ + + ML + +P D +++PHVIL+VGVNGVGKTT IGK+ Sbjct: 206 QASRKQLKDAEALYDILKKDMADMLHKVEQPLVIDSNNKPHVILMVGVNGVGKTTTIGKM 265 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +KK G VMLAAGDTFR+AA++QL++W DR V G+D+A++ ++A + A A Sbjct: 266 AKKFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNGIPVVAQHTGADSASVLFDAMQSATA 325 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K VDVLI DTAGRL N + LM + K++RV+++ D APH ++ +DA TGQNAL Q ++ Sbjct: 326 KDVDVLIADTAGRLQNKAHLMDELKKVVRVMRKHDATAPHEIMLTIDAGTGQNALSQAQL 385 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G TG+ +TK+DGTA+GG + + +IP+ F+G+GEGI+DL F +++F Sbjct: 386 FKEAVGLTGITITKLDGTAKGGVIFAVADKFEIPIRFIGIGEGIDDLRTFNSEEF 440 >gi|153840071|ref|ZP_01992738.1| cell division protein FtsY [Vibrio parahaemolyticus AQ3810] gi|149746343|gb|EDM57398.1| cell division protein FtsY [Vibrio parahaemolyticus AQ3810] Length = 403 Score = 246 bits (627), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 128/304 (42%), Positives = 196/304 (64%), Gaps = 1/304 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + S +++DD + EELE+ L+ +D+G+ Sbjct: 91 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTT 150 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+ L K D+ LY + E + ++L + +P D S P+VIL+VGVNGV Sbjct: 151 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGV 210 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 211 GKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 270 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N + LM + K++RV+K++D APH ++ LDA TG Sbjct: 271 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 330 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF Sbjct: 331 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFE 390 Query: 303 AKDF 306 ++F Sbjct: 391 TQEF 394 >gi|28899730|ref|NP_799335.1| cell division protein FtsY [Vibrio parahaemolyticus RIMD 2210633] gi|260879107|ref|ZP_05891462.1| cell division protein FtsY [Vibrio parahaemolyticus AN-5034] gi|260897983|ref|ZP_05906479.1| cell division protein FtsY [Vibrio parahaemolyticus Peru-466] gi|28807982|dbj|BAC61219.1| cell division protein FtsY [Vibrio parahaemolyticus RIMD 2210633] gi|308087163|gb|EFO36858.1| cell division protein FtsY [Vibrio parahaemolyticus Peru-466] gi|308089649|gb|EFO39344.1| cell division protein FtsY [Vibrio parahaemolyticus AN-5034] Length = 405 Score = 246 bits (627), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 128/304 (42%), Positives = 196/304 (64%), Gaps = 1/304 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + S +++DD + EELE+ L+ +D+G+ Sbjct: 93 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTT 152 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+ L K D+ LY + E + ++L + +P D S P+VIL+VGVNGV Sbjct: 153 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGV 212 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 213 GKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 272 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N + LM + K++RV+K++D APH ++ LDA TG Sbjct: 273 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 332 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF Sbjct: 333 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFE 392 Query: 303 AKDF 306 ++F Sbjct: 393 TQEF 396 >gi|66047975|ref|YP_237816.1| cell division transporter substrate-binding protein FtsY [Pseudomonas syringae pv. syringae B728a] gi|63258682|gb|AAY39778.1| Cell division transporter substrate-binding protein FtsY [Pseudomonas syringae pv. syringae B728a] Length = 505 Score = 246 bits (627), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 127/298 (42%), Positives = 190/298 (63%), Gaps = 2/298 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L +G + TS + EG+ + + + +DD + EE+E L+ +D+GV I++ Sbjct: 197 VGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIKS 256 Query: 70 LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L K K ++ + LY + + ML P+ +P H+P VILVVGVNG GKTT I Sbjct: 257 LTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNGAGKTTTI 316 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + Sbjct: 317 GKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQA 376 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q Sbjct: 377 AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQ 436 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A+ F Sbjct: 437 AKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 494 >gi|28867657|ref|NP_790276.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. tomato str. DC3000] gi|28850892|gb|AAO53971.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. tomato str. DC3000] gi|331014970|gb|EGH95026.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 513 Score = 245 bits (626), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 127/298 (42%), Positives = 190/298 (63%), Gaps = 2/298 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L +G + TS + EG+ + + + +DD + EE+E L+ +D+GV I++ Sbjct: 205 VGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIKS 264 Query: 70 LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L K K ++ + LY + + ML P+ +P H+P VILVVGVNG GKTT I Sbjct: 265 LTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNGAGKTTTI 324 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + Sbjct: 325 GKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQA 384 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q Sbjct: 385 AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQ 444 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A+ F Sbjct: 445 AKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 502 >gi|302187229|ref|ZP_07263902.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. syringae 642] Length = 502 Score = 245 bits (626), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 127/298 (42%), Positives = 190/298 (63%), Gaps = 2/298 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L +G + TS + EG+ + + + +DD + EE+E L+ +D+GV I++ Sbjct: 194 VGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIKS 253 Query: 70 LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L K K ++ + LY + + ML P+ +P H+P VILVVGVNG GKTT I Sbjct: 254 LTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKSEHKPFVILVVGVNGAGKTTTI 313 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + Sbjct: 314 GKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQA 373 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q Sbjct: 374 AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQ 433 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A+ F Sbjct: 434 AKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 491 >gi|113972101|ref|YP_735894.1| signal recognition particle-docking protein FtsY [Shewanella sp. MR-4] gi|113886785|gb|ABI40837.1| signal recognition particle-docking protein FtsY [Shewanella sp. MR-4] Length = 582 Score = 245 bits (626), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 126/296 (42%), Positives = 195/296 (65%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L +G TS + G + +++DD + EELE+ L+ +D+GV ++++ L Sbjct: 275 SFFARLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTSRLIQSLT 334 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + LYD+ + + K L P++ P + ++ P+VIL+VGVNGVGKTT IGK Sbjct: 335 EHASRKQLKDAEALYDLLRDEMQKTLDPVAIPLVPENANGPYVILMVGVNGVGKTTTIGK 394 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G VMLAAGDTFR+AA++QL++W R + V G+D+A++ ++A + A+ Sbjct: 395 LAKQYQRQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASVLFDALQAAK 454 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+K+D+LI DTAGRL N S LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q + Sbjct: 455 ARKIDILIADTAGRLQNKSHLMEELKKVVRVMKKLDLEAPHEVMLTLDASTGQNAISQAQ 514 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F G TG+ ++K+DGTA+GG + I KIP+ ++GVGE I+DL F +K+F Sbjct: 515 LFQEAVGVTGMTISKLDGTAKGGVVFAIADKFKIPLRYIGVGEQIDDLRTFNSKEF 570 >gi|320331637|gb|EFW87575.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. glycinea str. race 4] gi|330872359|gb|EGH06508.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. glycinea str. race 4] Length = 500 Score = 245 bits (626), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 128/305 (41%), Positives = 192/305 (62%), Gaps = 2/305 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62 Q+ + + + +L +G + TS + EG+ + + + +DD + EE+E L+ +D+GV Sbjct: 185 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 244 Query: 63 AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 I+ L K K ++ + LY + + ML P+ +P H+P VILVVGVNG Sbjct: 245 TSVIINSLTRKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKVEHKPFVILVVGVNG 304 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 305 AGKTTTIGKLAKKLQLGGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 364 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA T Sbjct: 365 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 424 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F Sbjct: 425 GQNAINQAKQFNQTVMLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 484 Query: 302 VAKDF 306 A+ F Sbjct: 485 EAEPF 489 >gi|90581426|ref|ZP_01237221.1| putative cell division protein FtsY [Vibrio angustum S14] gi|90437403|gb|EAS62599.1| putative cell division protein FtsY [Vibrio angustum S14] Length = 459 Score = 245 bits (626), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 127/298 (42%), Positives = 194/298 (65%), Gaps = 1/298 (0%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 S + +L +G T G + S +++DD + EELE+ L+ +D+G+ KI+E Sbjct: 153 SEGFFARLMRGLKKTKTNFGAGFFGLFSGKKIDDELFEELEEQLLIADVGMDTTLKIIEN 212 Query: 70 LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L K K++ LY + + + ML + +P D S +P+VIL+VGVNGVGKTT I Sbjct: 213 LTDKASKKELKDGEALYGLLKDELADMLAKVEQPLVIDTSKKPYVILMVGVNGVGKTTTI 272 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+K+ G VMLAAGDTFR+AA++QL++W +R + V G+D+A++ ++A + Sbjct: 273 GKLAKQCQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVIFDAIES 332 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+AK VDV+I DTAGRL N LM + K++RV+K++D APH ++ +DA TGQNA+ Q Sbjct: 333 AKAKNVDVVIADTAGRLQNKGNLMEELRKIVRVMKKVDVDAPHEIMLTVDAGTGQNAISQ 392 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++F VA +G+ +TK+DGTA+GG + + IP+ ++GVGEGI+DL PF A++F Sbjct: 393 AKLFSDVAPVSGITITKLDGTAKGGVIFAVADQFNIPIRYIGVGEGIDDLRPFAAEEF 450 >gi|262372507|ref|ZP_06065786.1| signal recognition particle-docking protein FtsY [Acinetobacter junii SH205] gi|262312532|gb|EEY93617.1| signal recognition particle-docking protein FtsY [Acinetobacter junii SH205] Length = 379 Score = 245 bits (626), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 132/305 (43%), Positives = 197/305 (64%), Gaps = 2/305 (0%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 ++S + ++ G T +G+ +I I + +DD + EE+E+ L+ +DIGV + I Sbjct: 70 TKSTGFFGRMKDGLIKTRRSFTDGMVNILIGGKEIDDELLEEVEEQLLIADIGVEATKTI 129 Query: 67 VEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 + L + D+ LY V E + +L P KP + D + P+VIL+VGVNGVGKT Sbjct: 130 IANLTERTARGDLIYSHALYKVLQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGKT 189 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K++ G KVMLAAGDTFR+AA +QL+IW +R V G+D+A++ ++A Sbjct: 190 TTIGKLAKRLQAEGKKVMLAAGDTFRAAATEQLQIWGERNDIPVVAQGHGADSASVIFDA 249 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 F+ A+AK +DVLI DTAGRL N S LM + K+ RV++++D APH ++ ++DA TGQNA Sbjct: 250 FESARAKGIDVLIADTAGRLQNKSNLMEELKKVKRVMQKIDATAPHEIMLIVDAGTGQNA 309 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + QV++F G TG+ +TK+DGTA+GG L I +P+ ++G+GE I+DL PF AK Sbjct: 310 INQVQLFDEAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRYIGIGEKIDDLRPFSAKS 369 Query: 306 FSAVI 310 F A + Sbjct: 370 FVAAL 374 >gi|330970953|gb|EGH71019.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. aceris str. M302273PT] Length = 499 Score = 245 bits (626), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 127/298 (42%), Positives = 190/298 (63%), Gaps = 2/298 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L +G + TS + EG+ + + + +DD + EE+E L+ +D+GV I++ Sbjct: 191 VGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIKS 250 Query: 70 LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L K K ++ + LY + + ML P+ +P H+P VILVVGVNG GKTT I Sbjct: 251 LTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNGAGKTTTI 310 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + Sbjct: 311 GKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQA 370 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q Sbjct: 371 AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQ 430 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A+ F Sbjct: 431 AKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 488 >gi|120600697|ref|YP_965271.1| signal recognition particle-docking protein FtsY [Shewanella sp. W3-18-1] gi|120560790|gb|ABM26717.1| signal recognition particle-docking protein FtsY [Shewanella sp. W3-18-1] Length = 480 Score = 245 bits (626), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 127/292 (43%), Positives = 191/292 (65%), Gaps = 1/292 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L +G TS + G + +++DD + EELE+ L+ +D+GV +++ +L Sbjct: 177 RLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTTRLINKLTEHAS 236 Query: 76 AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K + LYD+ + + K L P++ P + ++ P VIL+VGVNGVGKTT IGKL+K+ Sbjct: 237 RKQLKDAEALYDLLRDELQKTLDPVAIPLVPNNANGPFVILMVGVNGVGKTTTIGKLAKQ 296 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G VMLAAGDTFR+AA++QL++W R V G+D+A++ ++A + A+A+KV Sbjct: 297 YQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNDITVVAQHTGADSASVLFDALQAAKARKV 356 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 DVLI DTAGRL N + LM + K++RV+K+LDP APH V+ LDA+TGQNA+ Q ++F Sbjct: 357 DVLIADTAGRLQNKAHLMEELKKVVRVMKKLDPEAPHEVMLTLDASTGQNAISQAKLFQE 416 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G TGL ++K+DGTA+GG + I IP+ ++GVGE I+DL F +K+F Sbjct: 417 AVGVTGLTISKLDGTAKGGVVFAIADKFNIPIRYIGVGEQIDDLRTFNSKEF 468 >gi|330874697|gb|EGH08846.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 516 Score = 245 bits (626), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 126/298 (42%), Positives = 190/298 (63%), Gaps = 2/298 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L +G + TS + EG+ + + + +DD + EE+E L+ +D+GV I++ Sbjct: 208 VGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIKS 267 Query: 70 LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L K K ++ + LY + + +L P+ +P H+P VILVVGVNG GKTT I Sbjct: 268 LTQKVARKQLTDAQALYTSLQAELAALLKPVEQPLVIKAEHKPFVILVVGVNGAGKTTTI 327 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + Sbjct: 328 GKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQA 387 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q Sbjct: 388 AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQ 447 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A+ F Sbjct: 448 AKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 505 >gi|223041714|ref|ZP_03611908.1| cell division protein FtsY-like protein [Actinobacillus minor 202] gi|223017458|gb|EEF15875.1| cell division protein FtsY-like protein [Actinobacillus minor 202] Length = 517 Score = 245 bits (626), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 127/298 (42%), Positives = 193/298 (64%), Gaps = 7/298 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-- 70 + +L +G T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 211 FFSRLIQGLIKTKQSIGSGFFNFFRGKKIDDELFEELEEQLLIADLGMPTTTKIINNLSQ 270 Query: 71 -LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 TK+ KD LY + E + +L P+++P D S +P+VIL+VGVNGVGKTT I Sbjct: 271 HATKQQLKDADA---LYQLLKEELADVLKPVARPLEIDTSKKPYVILMVGVNGVGKTTTI 327 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+++ + G VMLAAGDTFR+AA++QL++W +R + + GSD+A++ ++A + Sbjct: 328 GKLARQFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQTSGSDSASVIFDAMQS 387 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A AK +DVLI DTAGRL N + LM + K++RV+++ D APH ++ LDA TGQNA+ Q Sbjct: 388 ASAKNIDVLIADTAGRLQNKNNLMDELKKIVRVMQKYDETAPHEIMLTLDAGTGQNAISQ 447 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++F+ G TG+ +TK+DGTA+GG + I IP+ F+GVGE I DL PF A++F Sbjct: 448 AKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEF 505 >gi|323144388|ref|ZP_08078996.1| signal recognition particle-docking protein FtsY [Succinatimonas hippei YIT 12066] gi|322415841|gb|EFY06567.1| signal recognition particle-docking protein FtsY [Succinatimonas hippei YIT 12066] Length = 507 Score = 245 bits (625), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 127/306 (41%), Positives = 189/306 (61%), Gaps = 18/306 (5%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 SE LS+ +L + + S+ G++ + R++D+ + EELE L+ +D+GV ++ Sbjct: 204 SEKLSFFERLKRTRENISM----GLSSFMKGRKIDEDLYEELETALLTADLGVETTNFVI 259 Query: 68 EELLTKRYAKDVSVQRVLYD-------VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 E+L ++ S R L+D + +++ +L P P +P VIL+VGVN Sbjct: 260 EKL------REESKLRELHDAVLLKKNLKDILKNILKPCEIPLEV-TGKKPFVILMVGVN 312 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL++K D GLKVMLAAGDTFR+AA++QLK W +R + + GSD+A+ Sbjct: 313 GAGKTTTIGKLARKYQDLGLKVMLAAGDTFRAAAVEQLKEWGNRANVPVIAQATGSDSAS 372 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++A A+A+ DVLI DTAGRL N LM + K++RV+K++D PH VL VLDAT Sbjct: 373 VLFDAVNAAKARNTDVLICDTAGRLQNKDNLMEELKKIVRVMKKIDEEVPHEVLLVLDAT 432 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNA+ Q +F TG+ +TK+DGTA+GG + + K+P+ ++G+GE DL P Sbjct: 433 TGQNAVSQATLFGKAVPITGICLTKLDGTAKGGVIFTLADKFKLPIRYVGIGEKAEDLRP 492 Query: 301 FVAKDF 306 F A F Sbjct: 493 FKADIF 498 >gi|33152121|ref|NP_873474.1| cell division protein FtsY [Haemophilus ducreyi 35000HP] gi|33148343|gb|AAP95863.1| cell division protein FtsY [Haemophilus ducreyi 35000HP] Length = 519 Score = 245 bits (625), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 127/307 (41%), Positives = 194/307 (63%), Gaps = 4/307 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + +++DD + EELE+ L+ +D+G+ KI++ L T Sbjct: 216 FFSRLLKGLIKTKQNIGSNFRQFFRGKKIDDELFEELEERLLMADLGMPTTTKIIQNLTT 275 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + +LY ++ + +L P+ KP D +P+VIL+VGVNGVGKTT IGKL Sbjct: 276 HATKKQLKDADLLYQQLKIELANVLKPIDKPLEIDPLTKPYVILMVGVNGVGKTTTIGKL 335 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +KK D G VMLAAGDTFR+AA++QL++W +R + V G+D+A++ ++A + A + Sbjct: 336 AKKFQDEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQTTGADSASVIFDAMQSAAS 395 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K +D+LI DTAGRL N + LM + K++RV+K+ + APH ++ LDA TGQNA+ Q ++ Sbjct: 396 KGIDILIADTAGRLQNKNHLMDELKKIVRVMKKYNESAPHEIMLTLDAGTGQNAISQAKL 455 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G TG+ +TK+DGTA+GG + I +P+ F+GVGE I+DL PF A++F I Sbjct: 456 FNEATGLTGITLTKLDGTAKGGVIFAIADQFNLPIRFIGVGEKIDDLRPFNAEEF---ID 512 Query: 312 GCLDYGE 318 +Y E Sbjct: 513 ALFEYDE 519 >gi|218710918|ref|YP_002418539.1| cell division protein FtxY [Vibrio splendidus LGP32] gi|218323937|emb|CAV20299.1| Cell division protein ftsY [Vibrio splendidus LGP32] Length = 422 Score = 245 bits (625), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 118/252 (46%), Positives = 171/252 (67%), Gaps = 1/252 (0%) Query: 56 SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVI 114 +D+G+ KI+E L K D+ LY + E + ++L + +P D + P+VI Sbjct: 162 ADVGMNTTVKIIENLTEKASRNDLKDGEALYGLLKEEMSEILSQVEQPLVVDTTKTPYVI 221 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 L+VGVNGVGKTT IGKL+K+ G KVMLAAGDTFR+AA++QL++W R + Sbjct: 222 LMVGVNGVGKTTTIGKLAKQFQSEGKKVMLAAGDTFRAAAVEQLQVWGQRNDVPVIAQHT 281 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 G+D+A++ Y+A + A+A+ VDV+I DTAGRL N S LM + K++RV+K++D APH ++ Sbjct: 282 GADSASVIYDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIM 341 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 LDA TGQNA+ Q ++F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGEG Sbjct: 342 LTLDAGTGQNAISQAKLFSDVAPVTGITLTKLDGTAKGGVIFSIADQFQIPIRYIGVGEG 401 Query: 295 INDLEPFVAKDF 306 I+DL PF +KDF Sbjct: 402 IDDLRPFESKDF 413 >gi|237802351|ref|ZP_04590812.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025208|gb|EGI05264.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. oryzae str. 1_6] Length = 514 Score = 244 bits (624), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 128/305 (41%), Positives = 193/305 (63%), Gaps = 2/305 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62 Q+ + + + +L +G + TS + EG+ + + + +DD + EE+E L+ +D+GV Sbjct: 199 QESEAGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 258 Query: 63 AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 I++ L K K ++ + LY + + ML P+ +P H+P VILVVGVNG Sbjct: 259 TSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKSEHKPFVILVVGVNG 318 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 319 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 378 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA T Sbjct: 379 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 438 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F Sbjct: 439 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 498 Query: 302 VAKDF 306 A+ F Sbjct: 499 EAEPF 503 >gi|240949098|ref|ZP_04753446.1| cell division protein FtsY-like protein [Actinobacillus minor NM305] gi|240296493|gb|EER47125.1| cell division protein FtsY-like protein [Actinobacillus minor NM305] Length = 517 Score = 244 bits (624), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 127/298 (42%), Positives = 193/298 (64%), Gaps = 7/298 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-- 70 + +L +G T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 211 FFSRLIQGLIKTKQSIGSGFFNFFRGKKIDDELFEELEEQLLIADLGMPTTTKIINNLSQ 270 Query: 71 -LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 TK+ KD LY + E + +L P+++P D S +P+VIL+VGVNGVGKTT I Sbjct: 271 HATKQQLKDADA---LYQLLKEELADVLKPVARPLEIDTSKKPYVILMVGVNGVGKTTTI 327 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+++ + G VMLAAGDTFR+AA++QL++W +R + + GSD+A++ ++A + Sbjct: 328 GKLARQFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQTSGSDSASVIFDAMQS 387 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A AK +DVLI DTAGRL N + LM + K++RV+++ D APH ++ LDA TGQNA+ Q Sbjct: 388 ASAKNIDVLIADTAGRLQNKNNLMDELKKIVRVMQKYDETAPHEIMLTLDAGTGQNAISQ 447 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++F+ G TG+ +TK+DGTA+GG + I IP+ F+GVGE I DL PF A++F Sbjct: 448 AKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEF 505 >gi|225677364|ref|ZP_03788335.1| signal recognition particle docking protein FtsY [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590591|gb|EEH11847.1| signal recognition particle docking protein FtsY [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 303 Score = 244 bits (624), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 134/304 (44%), Positives = 192/304 (63%), Gaps = 3/304 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +S L KG TS + G+ I S+++ LD + +ELE+LLI DIG ++ I++ Sbjct: 1 MSLFGNLYKGLLKTSSRFSNGVKSIFSNKKKLDQSLLDELEELLISMDIGHKTSKLIIDR 60 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L + ++ K+V + + I +L P+ +P + +PH+I+V GVNG GKTT IG Sbjct: 61 LTSIKFDKEVEYNIISQQLMNEIEAILSPVVQPL--ILNKKPHIIMVCGVNGNGKTTTIG 118 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ K + G VML A DTFR+AA +QL IWA+R+ V E GSD+A++AY A QA Sbjct: 119 KLAYKYKEMGKSVMLVACDTFRAAASEQLNIWAERSDCLIVTGEYGSDSASVAYRAVSQA 178 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 VDV++IDTAGRL NN LM + K+ R +K+LD APH V+ VLDATTGQNA Q+ Sbjct: 179 IKDNVDVVLIDTAGRLQNNVNLMEELSKIYRTIKKLDDTAPHDVILVLDATTGQNAYSQL 238 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F + TGLI+TK+DGTA+GG +I + +KI ++ +G+GE I DL F +K+F+ Sbjct: 239 EAFSKMVNVTGLIVTKLDGTAKGGVVIGLAEAYKIKLHAIGIGENIEDLREFTSKEFAEA 298 Query: 310 ITGC 313 + C Sbjct: 299 LFNC 302 >gi|42520719|ref|NP_966634.1| cell division ABC transporter, periplasmic substrate-binding protein FtsY [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410459|gb|AAS14568.1| cell division ABC transporter, periplasmic substrate-binding protein FtsY [Wolbachia endosymbiont of Drosophila melanogaster] Length = 303 Score = 244 bits (624), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 133/304 (43%), Positives = 191/304 (62%), Gaps = 3/304 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +S L +G TS + +G+ I S ++LD + +ELE+LLI DIG ++ I++ Sbjct: 1 MSLFSNLYQGLLKTSSRFSDGVKSIFSGKKKLDQSLLDELEELLISMDIGHKTSKLIIDR 60 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L + ++ K+V + + I +L P +P + +PH+I+V GVNG GKTT IG Sbjct: 61 LTSIKFDKEVEYNTITQQLMSEIESILNPAVQPL--ILNKKPHIIMVCGVNGNGKTTTIG 118 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ K + G VML A DTFR+AA +QL IWA+R+ V E GSD+A++AY A QA Sbjct: 119 KLAYKYKEMGKSVMLVACDTFRAAASEQLNIWAERSDCLIVTGEYGSDSASVAYRAVSQA 178 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 VDV++IDTAGRL NN LM + K+ R +K+LD APH V+ VLDATTGQNA Q+ Sbjct: 179 IKDNVDVVLIDTAGRLQNNVNLMEELSKIYRTIKKLDDTAPHDVILVLDATTGQNAYSQL 238 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F + TGLI+TK+DGTA+GG +I + +KI ++ +G+GE I DL F +K+F+ Sbjct: 239 EAFSKMVNVTGLIVTKLDGTAKGGVVIGLAEAYKIKLHAIGIGENIEDLREFTSKEFAEA 298 Query: 310 ITGC 313 + C Sbjct: 299 LFNC 302 >gi|219669784|ref|YP_002460219.1| signal recognition particle-docking protein FtsY [Desulfitobacterium hafniense DCB-2] gi|219540044|gb|ACL21783.1| signal recognition particle-docking protein FtsY [Desulfitobacterium hafniense DCB-2] Length = 320 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 144/315 (45%), Positives = 212/315 (67%), Gaps = 11/315 (3%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEEL- 70 + KL G T + + +I++ RR +D+ + EELE++LIRSD+GV + ++VE L Sbjct: 11 FFTKLKAGLTKTRDQFVTKVEEILTGRRKIDEELYEELEEVLIRSDVGVNTSFELVEGLR 70 Query: 71 --LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTV 127 + KR ++ +V+ + ELI ++L + + +F+ H P + LVVGVNGVGKTT Sbjct: 71 KEVKKRKLQEAEELKVV--LQELIAELL---GEEESMNFAEHGPSIFLVVGVNGVGKTTT 125 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ + G KV+LAAGDTFR+AAIDQL++W R + + + G+D AA+AY+A + Sbjct: 126 IGKLAHYFQEEGKKVILAAGDTFRAAAIDQLEVWGQRAGVEVIKQKEGADPAAVAYDALQ 185 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+++ D++I+DTAGRLHN LM + K+ RV++R P APH VL VLDATTGQNAL+ Sbjct: 186 AAKSRGADLVIMDTAGRLHNKVNLMEELRKVKRVIEREIPGAPHEVLLVLDATTGQNALQ 245 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF- 306 Q ++F VAG TG+++TK+DGTA+GG ++ I IPV ++GVGEG+ DL PF+ +DF Sbjct: 246 QAKLFQEVAGVTGIVLTKLDGTAKGGVVLGIQGEINIPVKWIGVGEGMEDLRPFIPQDFA 305 Query: 307 SAVITGCLDYGEEKI 321 SA+ D EE+I Sbjct: 306 SALFDQTQDDEEEEI 320 >gi|261250005|ref|ZP_05942582.1| signal recognition particle receptor protein FtsY [Vibrio orientalis CIP 102891] gi|260939509|gb|EEX95494.1| signal recognition particle receptor protein FtsY [Vibrio orientalis CIP 102891] Length = 406 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 127/296 (42%), Positives = 195/296 (65%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + A T + G + +++DD + EELE+ L+ +D+G+ KI++ L Sbjct: 102 SFFARLKRSLARTKANIGAGFFGLFKGKQIDDELFEELEEQLLIADVGMDTTLKIIDNLT 161 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K +D+ LY + E + ++L + KP D S P+VIL+VGVNGVGKTT IGK Sbjct: 162 EKASRQDLKDGEALYGLLKEEMAEILSNVEKPLEVDSSKAPYVILMVGVNGVGKTTTIGK 221 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G VMLAAGDTFR+AA++QL++W +R + V G+D+A++ Y+A + A+ Sbjct: 222 LAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVIYDAIESAK 281 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 AK VDV+I DTAGRL N + LM + K++RV++++D APH ++ LDA TGQNA+ Q + Sbjct: 282 AKGVDVVIADTAGRLQNKANLMEELRKIVRVMQKVDGSAPHEIMLTLDAGTGQNAISQAK 341 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + + +IP+ ++GVGEGI+DL PF ++F Sbjct: 342 LFSDVAPLTGITLTKLDGTAKGGVIFALADQFQIPIRYIGVGEGIDDLRPFETQEF 397 >gi|291288128|ref|YP_003504944.1| signal recognition particle-docking protein FtsY [Denitrovibrio acetiphilus DSM 12809] gi|290885288|gb|ADD68988.1| signal recognition particle-docking protein FtsY [Denitrovibrio acetiphilus DSM 12809] Length = 380 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 141/305 (46%), Positives = 200/305 (65%), Gaps = 12/305 (3%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKI 66 +E + ++L +G + TS KL G+ I S ++ +D+ + EELE+L I SD+GV+ KI Sbjct: 69 AEKPGFFKRLKQGLSKTSGKLVGGMETIFSGKKVIDEDLLEELEELFITSDVGVSTTMKI 128 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELI----HKMLMPLSKPFNWDFSH-RPHVILVVGVNG 121 ++ + +D ++ L + EL ++L L P + + +P+VILV GVNG Sbjct: 129 IDNV------RDELSRKALKNPQELKASLRKQILNILDIPNELNTTDDKPYVILVAGVNG 182 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT I K++K+ + GL LAAGDTFR+AAIDQL +WA R V GSD+AA+ Sbjct: 183 AGKTTSIAKMAKRFKEQGLSTCLAAGDTFRAAAIDQLCVWAKRVDVPVVKQSEGSDSAAV 242 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + ++KK+DVLI DTAGRLHN LM + K++R+ KR P APH VL VLDAT+ Sbjct: 243 IFDAIQSCKSKKIDVLIADTAGRLHNKFNLMKEMEKIVRIAKRELPDAPHEVLLVLDATS 302 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL Q + FH G TGL++TK+DGTA+GG +I IV +IPV F+G GEGI+D++PF Sbjct: 303 GQNALSQAQKFHEDIGITGLVLTKLDGTAKGGAVIGIVDELQIPVKFIGFGEGIDDMKPF 362 Query: 302 VAKDF 306 A+DF Sbjct: 363 SAEDF 367 >gi|114561463|ref|YP_748976.1| signal recognition particle-docking protein FtsY [Shewanella frigidimarina NCIMB 400] gi|114332756|gb|ABI70138.1| signal recognition particle-docking protein FtsY [Shewanella frigidimarina NCIMB 400] Length = 587 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 127/292 (43%), Positives = 191/292 (65%), Gaps = 1/292 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L +G TS + G + +++++ + EELE+ L+ +D+GV K+++ L Sbjct: 284 RLKRGLMRTSENIGSGFIGLFRGKKINEELFEELEEQLLIADVGVETTNKLIKSLTEHAS 343 Query: 76 AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K + LYD+ E + KML P++ P D ++ P VIL++GVNGVGKTT IGKL+K+ Sbjct: 344 RKQLKDAEALYDLMREEMQKMLDPVAIPLVPDNANGPFVILMIGVNGVGKTTTIGKLAKQ 403 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G VMLAAGDTFR+AA++QL++W R + V G+D+A++ ++A + A+A+KV Sbjct: 404 YQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASVIFDALQAAKARKV 463 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 DVLI DTAGRL N S LM + K++RV+K+LDP +PH V+ LDA+TGQNA+ Q ++F Sbjct: 464 DVLIADTAGRLQNKSHLMEELKKVVRVMKKLDPDSPHEVMLTLDASTGQNAISQAQLFKE 523 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G TG+ ++K+DGTA+GG + I IP+ +GVGE I+DL F + DF Sbjct: 524 AVGVTGITISKLDGTAKGGVIFAIADKFSIPIRHIGVGEQIDDLRTFNSNDF 575 >gi|119776600|ref|YP_929340.1| cell division protein FtsY [Shewanella amazonensis SB2B] gi|119769100|gb|ABM01671.1| signal recognition particle-docking protein FtsY [Shewanella amazonensis SB2B] Length = 563 Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 130/298 (43%), Positives = 194/298 (65%), Gaps = 7/298 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71 + +L +G TS + G + +++DD + EELE+ L+ +D+GV K+++ L Sbjct: 256 FFARLKRGLMRTSENIGSGFIGLFRGKKIDDELFEELEEQLLIADVGVETTSKLIKSLTE 315 Query: 72 --TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 ++R KD LY++ E + + L P+S P + + P+VIL+VGVNGVGKTT I Sbjct: 316 HASRRQLKDAEA---LYELLREEMQRTLEPVSVPLVPENAQGPYVILMVGVNGVGKTTTI 372 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+K+ G VMLAAGDTFR+AA++QL++W R + V G+D+A++ ++A + Sbjct: 373 GKLAKQYQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASVLFDALQS 432 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+AK VDVLI DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q Sbjct: 433 AKAKGVDVLICDTAGRLQNKNHLMEELKKVVRVMKKLDESAPHEVMLTLDASTGQNAISQ 492 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++F G TG+ +TK+DGTA+GG + I IP+ ++GVGE I+DL F A+DF Sbjct: 493 AKLFQEAVGVTGISITKLDGTAKGGVIFAIADKFGIPIRYIGVGEQIDDLRVFNARDF 550 >gi|307128891|ref|YP_003880907.1| signal recognition particle (SRP) receptor [Dickeya dadantii 3937] gi|306526420|gb|ADM96350.1| signal recognition particle (SRP) receptor [Dickeya dadantii 3937] Length = 446 Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 125/297 (42%), Positives = 189/297 (63%), Gaps = 6/297 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71 + +L + T L G + +++DD + +ELE+ L+ +D+GV +KI++ L Sbjct: 144 FFARLKRSLVKTRQNLGSGFVGLFRGKKIDDDLFDELEEQLLIADVGVETTRKIIDRLTE 203 Query: 72 --TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 +++ KD L + +L + P + D S P VIL+VGVNGVGKTT IG Sbjct: 204 HASRKQLKDAEALIALLKAE--MSDILAKVDAPLDID-SKTPFVILMVGVNGVGKTTTIG 260 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+++ G VMLAAGDTFR+AA++QL++W R + V G+D+A++ ++A + A Sbjct: 261 KLARQYQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVPVVAQHTGADSASVIFDALQAA 320 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ VDVLI DTAGRL N S LM + K++RV+K+LD +APH V+ LDA+TGQNA+ Q Sbjct: 321 RARGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDENAPHEVMLTLDASTGQNAVSQA 380 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++F+ G +G+ +TK+DGTA+GG + I IP+ ++GVGE I+DL PF A DF Sbjct: 381 KLFNETVGLSGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGESIDDLRPFKADDF 437 >gi|323498060|ref|ZP_08103066.1| signal recognition particle-docking protein FtsY [Vibrio sinaloensis DSM 21326] gi|323316868|gb|EGA69873.1| signal recognition particle-docking protein FtsY [Vibrio sinaloensis DSM 21326] Length = 404 Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 127/296 (42%), Positives = 194/296 (65%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + A T + G + +++DD + EELE+ L+ +D+G+ KI+E L Sbjct: 100 SFFARLKRSLARTKANIGAGFFGLFKGKQIDDDLFEELEEQLLIADVGMDTTLKIIENLT 159 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K +++ LY + E + ++L + +P D S P+VIL+VGVNGVGKTT IGK Sbjct: 160 EKASRQELKDGEALYGLLKEEMAEILSNVEQPLQVDTSKTPYVILMVGVNGVGKTTTIGK 219 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ Y+A + A+ Sbjct: 220 LAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNGVPVVAQHTGADSASVIYDAIESAK 279 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 AK VDV+I DTAGRL N + LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 280 AKGVDVVIADTAGRLQNKANLMEELRKIVRVMKKVDDSAPHEIMLTLDAGTGQNAISQAK 339 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + + +IP+ ++GVGEGI+DL PF ++F Sbjct: 340 LFSDVAPLTGITLTKLDGTAKGGVIFALADQFQIPIRYIGVGEGIDDLRPFETQEF 395 >gi|86148197|ref|ZP_01066495.1| cell division protein FtsY [Vibrio sp. MED222] gi|85834044|gb|EAQ52204.1| cell division protein FtsY [Vibrio sp. MED222] Length = 422 Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 118/252 (46%), Positives = 171/252 (67%), Gaps = 1/252 (0%) Query: 56 SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVI 114 +D+G+ KI+E L K D+ LY + E + ++L + +P D + P+VI Sbjct: 162 ADVGMNTTVKIIENLTEKASRNDLKDGEALYGLLKEEMSEILSQVEQPLVVDTTKTPYVI 221 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 L+VGVNGVGKTT IGKL+K+ G KVMLAAGDTFR+AA++QL++W R + Sbjct: 222 LMVGVNGVGKTTTIGKLAKQFQSEGKKVMLAAGDTFRAAAVEQLQVWGQRNDVPVIAQHT 281 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 G+D+A++ Y+A + A+A+ VDV+I DTAGRL N S LM + K++RV+K++D APH ++ Sbjct: 282 GADSASVIYDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIM 341 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 LDA TGQNA+ Q ++F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGEG Sbjct: 342 LTLDAGTGQNAISQAKLFSDVAPVTGITLTKLDGTAKGGVIFSIADLFQIPIRYIGVGEG 401 Query: 295 INDLEPFVAKDF 306 I+DL PF +KDF Sbjct: 402 IDDLRPFESKDF 413 >gi|226952926|ref|ZP_03823390.1| signal recognition particle-docking protein FtsY [Acinetobacter sp. ATCC 27244] gi|226836247|gb|EEH68630.1| signal recognition particle-docking protein FtsY [Acinetobacter sp. ATCC 27244] Length = 371 Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 132/304 (43%), Positives = 196/304 (64%), Gaps = 2/304 (0%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 +S + ++ G T +G+ +I I + +DD + EE+E+ L+ +DIGV + I+ Sbjct: 63 KSGGFFGRMKDGLTKTRRSFTDGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTII 122 Query: 68 EELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 L + D+ LY + E + +L P KP + D + P+VIL+VGVNGVGKTT Sbjct: 123 ANLTERTARGDLIYSHALYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGKTT 182 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+K++ G KVMLAAGDTFR+AA +QL+IW +R V G+D+A++ ++AF Sbjct: 183 TIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIPVVAQGHGADSASVIFDAF 242 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+AK +DVLI DTAGRL N S LM + K+ RV++++D APH ++ ++DA TGQNA+ Sbjct: 243 ESARAKGIDVLIADTAGRLQNKSHLMEELKKVKRVMQKIDATAPHEIMLIVDAGTGQNAI 302 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QV++F G TG+ +TK+DGTA+GG L I +P+ ++GVGE I+DL PF AK F Sbjct: 303 NQVQLFDEAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRYIGVGEKIDDLRPFSAKSF 362 Query: 307 SAVI 310 A + Sbjct: 363 VAAL 366 >gi|294650502|ref|ZP_06727861.1| signal recognition particle-docking protein FtsY [Acinetobacter haemolyticus ATCC 19194] gi|292823645|gb|EFF82489.1| signal recognition particle-docking protein FtsY [Acinetobacter haemolyticus ATCC 19194] Length = 371 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 132/304 (43%), Positives = 196/304 (64%), Gaps = 2/304 (0%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 +S + ++ G T +G+ +I I + +DD + EE+E+ L+ +DIGV + I+ Sbjct: 63 KSGGFFGRMKDGLTKTRRSFTDGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTII 122 Query: 68 EELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 L + D+ LY + E + +L P KP + D + P+VIL+VGVNGVGKTT Sbjct: 123 ANLTERTARGDLIYSHALYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGKTT 182 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+K++ G KVMLAAGDTFR+AA +QL+IW +R V G+D+A++ ++AF Sbjct: 183 TIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIPVVAQGHGADSASVIFDAF 242 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+AK +DVLI DTAGRL N S LM + K+ RV++++D APH ++ ++DA TGQNA+ Sbjct: 243 ESARAKGIDVLIADTAGRLQNKSHLMEELKKVKRVMQKIDATAPHEIMLIVDAGTGQNAI 302 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QV++F G TG+ +TK+DGTA+GG L I +P+ ++GVGE I+DL PF AK F Sbjct: 303 NQVQLFDEAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRYIGVGEKIDDLRPFSAKSF 362 Query: 307 SAVI 310 A + Sbjct: 363 VAAL 366 >gi|84393534|ref|ZP_00992288.1| Signal recognition particle GTPase [Vibrio splendidus 12B01] gi|84375813|gb|EAP92706.1| Signal recognition particle GTPase [Vibrio splendidus 12B01] Length = 417 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 118/252 (46%), Positives = 171/252 (67%), Gaps = 1/252 (0%) Query: 56 SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVI 114 +D+G+ KI+E L K D+ LY + E + +L + +P D + P+VI Sbjct: 157 ADVGMNTTVKIIENLTEKASRNDLKDGEALYGLLKEEMADILSQVEQPLVVDTTKTPYVI 216 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 L+VGVNGVGKTT IGKL+K+ G KVMLAAGDTFR+AA++QL++W R + + Sbjct: 217 LMVGVNGVGKTTTIGKLAKQFQSEGKKVMLAAGDTFRAAAVEQLQVWGQRNNVPVIAQHT 276 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 G+D+A++ Y+A + A+A+ VDV+I DTAGRL N S LM + K++RV+K++D APH ++ Sbjct: 277 GADSASVIYDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIM 336 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 LDA TGQNA+ Q ++F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGEG Sbjct: 337 LTLDAGTGQNAISQAKLFSDVAPVTGITLTKLDGTAKGGVIFSIADQFQIPIRYIGVGEG 396 Query: 295 INDLEPFVAKDF 306 I+DL PF +KDF Sbjct: 397 IDDLRPFESKDF 408 >gi|294085381|ref|YP_003552141.1| cell division protein ftsY [Candidatus Puniceispirillum marinum IMCC1322] gi|292664956|gb|ADE40057.1| cell division protein ftsY [Candidatus Puniceispirillum marinum IMCC1322] Length = 309 Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 130/305 (42%), Positives = 201/305 (65%), Gaps = 3/305 (0%) Query: 11 LSWIRKLTKGFASTSLKLK---EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 +SW +KL +G ++ K+ ++++ R+D EE+ED LI +D+G AQ++ Sbjct: 1 MSWFKKLKEGLGKSTSKVTASLSSLSNLFGGARIDASSLEEVEDALISADLGTTSAQRLA 60 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 + + ++ + + +++ I ++L P+++ D +H PHV+L+VGVNG GKTT Sbjct: 61 DRMRRHKFEGPIDSDTLGQALADGITEILEPVAQKLEIDAAHAPHVVLLVGVNGSGKTTT 120 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 GKL+++ D G VMLAAGDTFR+AAI+QL+IW RT + + G DAAALAYEA + Sbjct: 121 AGKLAQQWRDEGKSVMLAAGDTFRAAAIEQLQIWGARTGTEVIAGAQGGDAAALAYEALE 180 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 +A+A +DVLIIDTAGRL N + LM + K++RV+++LD APH + +LD T GQNA+ Sbjct: 181 KAKAANIDVLIIDTAGRLQNRTELMDELAKIVRVMRKLDASAPHDSVIILDGTVGQNAIS 240 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 QV+ F VA TGLI+TK+DG+A+GG ++ + +PV+ +GVGE +DL+PF A +F+ Sbjct: 241 QVKAFREVADVTGLIVTKLDGSAKGGVVVALAEEFGLPVHAVGVGEQADDLQPFAAAEFA 300 Query: 308 AVITG 312 + G Sbjct: 301 KALVG 305 >gi|260774826|ref|ZP_05883728.1| signal recognition particle receptor protein FtsY [Vibrio coralliilyticus ATCC BAA-450] gi|260609251|gb|EEX35406.1| signal recognition particle receptor protein FtsY [Vibrio coralliilyticus ATCC BAA-450] Length = 411 Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 127/296 (42%), Positives = 193/296 (65%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L A T + G + +++DD + EELE+ L+ +D+G+ KI++ L Sbjct: 107 SFFARLKHSLARTKANIGAGFFGLFKDKQIDDELFEELEEQLLIADVGMDTTVKIIDNLT 166 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K +++ LY + E + +L + KP D + P+VIL+VGVNGVGKTT IGK Sbjct: 167 EKASRQELKDGEALYGLLKEEMAGILSTVEKPLEIDTNKTPYVILMVGVNGVGKTTTIGK 226 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R V G+D+A++ Y+A + A+ Sbjct: 227 LAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVVAQHTGADSASVIYDAIESAK 286 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 AK VDV+I DTAGRL N + LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 287 AKGVDVVIADTAGRLQNKANLMEELRKIVRVMKKVDDSAPHEIMLTLDAGTGQNAISQAK 346 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + + +IP+ ++GVGEGI+DL PF ++F Sbjct: 347 LFSDVAPLTGITLTKLDGTAKGGVIFALADQFQIPIRYIGVGEGIDDLRPFETQEF 402 >gi|330447182|ref|ZP_08310832.1| signal recognition particle-docking protein FtsY [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491373|dbj|GAA05329.1| signal recognition particle-docking protein FtsY [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 458 Score = 243 bits (620), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 126/298 (42%), Positives = 192/298 (64%), Gaps = 1/298 (0%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 S + +L +G T G + S +++DD + EELE+ L+ +D+G+ KI+E Sbjct: 152 SEGFFARLMRGLKKTKTNFGAGFFGLFSGKKIDDELFEELEEQLLIADVGMDTTLKIIEN 211 Query: 70 LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L K K++ LY + + + ML + +P D S +P+VIL+VGVNGVGKTT I Sbjct: 212 LTDKASRKELKDGEALYGLLKDELADMLSKVEQPLVVDTSKKPYVILMVGVNGVGKTTTI 271 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+K+ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + Sbjct: 272 GKLAKQFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNHVPVVAQHTGADSASVIFDAIES 331 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+AK +DV+I DTAGRL N LM + K++RV+K++D APH ++ +DA TGQNA+ Q Sbjct: 332 AKAKNIDVVIADTAGRLQNKGNLMEELRKIVRVMKKVDVDAPHEIMLTVDAGTGQNAISQ 391 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++F VA +G+ +TK+DGTA+GG + I IP+ ++G+GEGI+DL PF A +F Sbjct: 392 AKLFSDVAPVSGITITKLDGTAKGGVIFAIADQFNIPIRYIGIGEGIDDLRPFAADEF 449 >gi|89895351|ref|YP_518838.1| hypothetical protein DSY2605 [Desulfitobacterium hafniense Y51] gi|89334799|dbj|BAE84394.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 322 Score = 243 bits (620), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 146/327 (44%), Positives = 214/327 (65%), Gaps = 11/327 (3%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIG 59 MS K + + KL G T + + +I++ RR +D+ + EELE++LIRSD+G Sbjct: 1 MSMYKEEVQLAGFFTKLKNGLTKTRDQFVTKVEEILTGRRKIDEELYEELEEVLIRSDVG 60 Query: 60 VAVAQKIVEEL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVIL 115 V + +VE L + KR ++ +++ + ELI ++L + + +F+ H P + L Sbjct: 61 VNTSFGLVEGLRKEVKKRKLQEAEELKIV--LQELIAELL---GEEESMNFAEHGPSIFL 115 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VVGVNGVGKTT IGKL+ G KV+LAAGDTFR+AAIDQL++W R + + + G Sbjct: 116 VVGVNGVGKTTTIGKLAHYFQGEGKKVILAAGDTFRAAAIDQLEVWGQRAGVEVIKQKEG 175 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 +D AA+AY+A + A+++ D++I+DTAGRLHN LM + K+ RV++R P APH VL Sbjct: 176 ADPAAVAYDALQAAKSRGADLVIMDTAGRLHNKVNLMEELRKVKRVIEREIPGAPHEVLL 235 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 VLDATTGQNAL+Q ++F VAG TG+++TK+DGTA+GG ++ I IPV ++GVGEG+ Sbjct: 236 VLDATTGQNALQQAKLFQEVAGVTGIVLTKLDGTAKGGVVLGIQGEINIPVKWIGVGEGM 295 Query: 296 NDLEPFVAKDF-SAVITGCLDYGEEKI 321 DL PF+ +DF SA+ D EE+I Sbjct: 296 EDLRPFIPQDFASALFDQTQDDEEEEI 322 >gi|293393950|ref|ZP_06638256.1| cell division protein FtsY [Serratia odorifera DSM 4582] gi|291423510|gb|EFE96733.1| cell division protein FtsY [Serratia odorifera DSM 4582] Length = 608 Score = 243 bits (619), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 132/300 (44%), Positives = 193/300 (64%), Gaps = 12/300 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+E L Sbjct: 306 FFARLKRSLIKTKQNLGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIESLTL 365 Query: 73 KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126 K + LY ++SE++ K+ PL D S + P+VIL+VGVNGVGKTT Sbjct: 366 HASRKQLKDAEALYGKLKEEMSEILAKVDQPL------DVSGKTPYVILMVGVNGVGKTT 419 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A Sbjct: 420 TIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNRIPVVAQHTGADSASVIFDAV 479 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+A+ VDVLI DTAGRL N + LM + K++RV+K+LD HAPH V+ LDA+TGQNA+ Sbjct: 480 QAAKARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEHAPHEVMLTLDASTGQNAV 539 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF A DF Sbjct: 540 SQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFKADDF 599 >gi|271502549|ref|YP_003335575.1| signal recognition particle-docking protein FtsY [Dickeya dadantii Ech586] gi|270346104|gb|ACZ78869.1| signal recognition particle-docking protein FtsY [Dickeya dadantii Ech586] Length = 466 Score = 243 bits (619), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 126/299 (42%), Positives = 192/299 (64%), Gaps = 10/299 (3%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71 + +L + T L G + +++DD + +ELE+ L+ +D+GV +KI+ L Sbjct: 164 FFARLKRSLIKTRQNLGSGFVGLFRGKKIDDDLFDELEEQLLIADVGVETTRKIIARLTE 223 Query: 72 --TKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 +++ KD L ++S+++ K+ +PL+ S P VIL+VGVNGVGKTT Sbjct: 224 HASRKQLKDAEALIALLKSEMSDILAKVDVPLAID-----SKTPFVILMVGVNGVGKTTT 278 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+++ G VMLAAGDTFR+AA++QL++W R + V G+D+A++ ++A + Sbjct: 279 IGKLARQYQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVPVVAQHTGADSASVIFDALQ 338 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+A+ VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ LDA+TGQNA+ Sbjct: 339 AAKARGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEVMLTLDASTGQNAVS 398 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++F+ G +G+ +TK+DGTA+GG + I IP+ ++GVGE I+DL PF A DF Sbjct: 399 QAKLFNEAVGLSGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGESIDDLRPFKADDF 457 >gi|319786795|ref|YP_004146270.1| signal recognition particle-docking protein FtsY [Pseudoxanthomonas suwonensis 11-1] gi|317465307|gb|ADV27039.1| signal recognition particle-docking protein FtsY [Pseudoxanthomonas suwonensis 11-1] Length = 447 Score = 243 bits (619), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 124/269 (46%), Positives = 176/269 (65%), Gaps = 3/269 (1%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLM 97 +LDD + +E+E L+ +D+GV +VE L + A++ + R L +ELI ML Sbjct: 169 KLDDDLLDEIETALLTADVGVTATTALVEGLRKRMKAREFADARALLTALRAELIA-MLQ 227 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P+++P D + RP V+L VGVNGVGKTT IGKL+++ D G +MLAAGDTFR+AA+ Q Sbjct: 228 PVARPLQIDPATRPFVLLTVGVNGVGKTTTIGKLARRFKDEGRSLMLAAGDTFRAAAVAQ 287 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ W +R + +DAA++A++A + A+A+ +VLI DTAGRLH LM +GK Sbjct: 288 LQAWGERNGVTVIAQGQNADAASVAFDALQAAKARGTEVLIADTAGRLHTQVGLMNELGK 347 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + RVL++LDP APH VL V+D TTGQNAL Q+ F+A G TGL++TK+DGTA+GG + Sbjct: 348 IKRVLQKLDPAAPHEVLMVIDGTTGQNALNQLRQFNAAVGVTGLVVTKLDGTAKGGVVFA 407 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + IP+ F G+GE DL F + F Sbjct: 408 LAREFGIPIRFAGIGERPEDLRVFDPEAF 436 >gi|145630513|ref|ZP_01786293.1| cell division protein FtsY [Haemophilus influenzae R3021] gi|144983903|gb|EDJ91345.1| cell division protein FtsY [Haemophilus influenzae R3021] Length = 400 Score = 243 bits (619), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 126/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G +++DD + EELE+ L+ +DIGV KIV+ L Sbjct: 96 FFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIVKNLTE 155 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K++ +LY ++ + +L P+++P D + +P+VIL+VGVNGVGKTT IGKL Sbjct: 156 HASRKELQDAELLYQQLKVEMADILEPVARPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 215 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R V GSD+A++ ++A + A A Sbjct: 216 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 275 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+LI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 276 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 335 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I K+P+ ++GVGE I DL F AK+F Sbjct: 336 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 390 >gi|70733142|ref|YP_262915.1| signal recognition particle-docking protein FtsY [Pseudomonas fluorescens Pf-5] gi|68347441|gb|AAY95047.1| signal recognition particle-docking protein FtsY [Pseudomonas fluorescens Pf-5] Length = 497 Score = 243 bits (619), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 128/305 (41%), Positives = 193/305 (63%), Gaps = 3/305 (0%) Query: 5 KVASES-LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62 + A ES + + +L +G + TS + EG+ + + + +DD + E+LE L+ +D+GV Sbjct: 182 RPAEESKIGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDELLEDLETRLLTADVGVEA 241 Query: 63 AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 I++ L K K ++ LY + + ML P+ +P ++P VILVVGVNG Sbjct: 242 TSVIIQNLTQKVARKQLTDSDALYASLQAELTSMLKPVEQPLQIVAQNKPFVILVVGVNG 301 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 302 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASV 361 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA T Sbjct: 362 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 421 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q + F+ +GL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F Sbjct: 422 GQNAINQAKQFNQTVQLSGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 481 Query: 302 VAKDF 306 A+ F Sbjct: 482 EAEPF 486 >gi|119475398|ref|ZP_01615751.1| signal recognition particle receptor FtsY [marine gamma proteobacterium HTCC2143] gi|119451601|gb|EAW32834.1| signal recognition particle receptor FtsY [marine gamma proteobacterium HTCC2143] Length = 398 Score = 242 bits (618), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 120/256 (46%), Positives = 174/256 (67%), Gaps = 1/256 (0%) Query: 56 SDIGVAVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVI 114 +D+GV + I+E L + ++++ + LY + + + ++L +P D + +P+VI Sbjct: 139 ADVGVEATRDIMETLAKQVSRRELADPQALYRGLQKELAELLEHSREPLQIDETKKPYVI 198 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 LVVGVNGVGKTT IGKL K+ G VMLAAGDTFR+AA++QL++W +R + + Sbjct: 199 LVVGVNGVGKTTTIGKLGKRFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHT 258 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 G+D+A++ ++A + AQA+KVDVLI DTAGRLHN LM + K++RV+ +LD APH V+ Sbjct: 259 GADSASVIFDAVQAAQARKVDVLIADTAGRLHNKDNLMEELKKVVRVMGKLDSTAPHEVM 318 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VLDA TGQNAL Q + F V G TG+ +TK+DGTA+GG + I ++P+ F+GVGE Sbjct: 319 LVLDAGTGQNALSQAKAFQEVVGVTGITVTKLDGTAKGGIIFAISKQLQLPIRFIGVGEQ 378 Query: 295 INDLEPFVAKDFSAVI 310 I+DL PF A DF A + Sbjct: 379 IDDLRPFAADDFVAAL 394 >gi|58585012|ref|YP_198585.1| Signal recognition particle GTPase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419328|gb|AAW71343.1| Signal recognition particle GTPase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 301 Score = 242 bits (618), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 132/298 (44%), Positives = 192/298 (64%), Gaps = 3/298 (1%) Query: 17 LTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L +G TS + +G+ I S+++ LD + +ELE+LLI DIG ++ I++ L + ++ Sbjct: 5 LYRGLLKTSSRFSDGVKSIFSAKKKLDQSLLDELEELLISMDIGHKTSKLIIDRLASIKF 64 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 K+V + + I +L P+ +P D PH+I+V GVNG GKTT IGKL+ K Sbjct: 65 DKEVEHNIITQQLMSEIEAILNPVVQPLILD--KNPHIIMVCGVNGNGKTTTIGKLAYKY 122 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 + G VML A DTFR+AA +QL IWA+R+ V E G+D+A++AY A QA VD Sbjct: 123 KNMGKSVMLVACDTFRAAASEQLNIWAERSDCFIVTGEYGNDSASVAYRAVSQAIKGSVD 182 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 V++IDTAGRL NN LM + K+ R +K+LD APH V+ VLDATTGQNA Q+E F + Sbjct: 183 VVLIDTAGRLQNNVNLMEELSKIYRTIKKLDGTAPHDVILVLDATTGQNAYSQLEAFSKM 242 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 TGLI+TK+DGTA+GG +I + T+++ ++ +G+GE I DL F +K+F+ + GC Sbjct: 243 VSVTGLIITKLDGTAKGGVVIGLAETYRVKLHAIGIGESIEDLREFTSKEFAKALFGC 300 >gi|89076091|ref|ZP_01162451.1| putative cell division protein FtsY [Photobacterium sp. SKA34] gi|89048243|gb|EAR53825.1| putative cell division protein FtsY [Photobacterium sp. SKA34] Length = 346 Score = 242 bits (618), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 124/299 (41%), Positives = 194/299 (64%), Gaps = 1/299 (0%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 +S + +L +G T G + +++DD + EELE+ L+ +D+G+ KI+E Sbjct: 39 KSEGFFARLMRGLKKTKTNFGAGFFGLFRGKKIDDELFEELEEQLLIADVGMDTTLKIIE 98 Query: 69 ELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L K K++ LY + + + ML + +P D S +P+VIL+VGVNGVGKTT Sbjct: 99 NLTDKASKKELKDGEALYGLLKDELAGMLAKVEQPLVIDTSKKPYVILMVGVNGVGKTTT 158 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+K+ G VMLAAGDTFR+AA++QL++W +R + V G+D+A++ ++A + Sbjct: 159 IGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVIFDAIE 218 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+AK +DV+I DTAGRL N LM + K++RV+K++D APH ++ +DA TGQNA+ Sbjct: 219 SAKAKNIDVVIADTAGRLQNKGNLMEELRKIVRVMKKVDVDAPHEIMLTVDAGTGQNAIS 278 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++F VA +G+ +TK+DGTA+GG + + IP+ ++G+GEGI+DL PF A++F Sbjct: 279 QAKLFSDVAPVSGITITKLDGTAKGGVIFAVADQFNIPIRYIGIGEGIDDLRPFAAEEF 337 >gi|290473621|ref|YP_003466493.1| cell division protein: membrane binding (N-terminal); GTPase domain (C-terminal) [Xenorhabdus bovienii SS-2004] gi|289172926|emb|CBJ79697.1| cell division protein: membrane binding (N-terminal); GTPase domain (C-terminal) [Xenorhabdus bovienii SS-2004] Length = 465 Score = 242 bits (618), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 126/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 163 FFARLKRSLVKTRQNLGSGFLGLFSGKKIDDDLFEELEEQLLVADVGVETTRKIINNLTA 222 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K++ LY + E + +L + KP + + P+VIL+VGVNGVGKTT IGKL Sbjct: 223 HASRKELKDAEALYTKLKEEMSDILAKVDKPLDIE-GKSPYVILMVGVNGVGKTTTIGKL 281 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R + G+D A++ ++A + A+A Sbjct: 282 ARQYQSQGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADPASVIFDAIQSAKA 341 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K VD+LI DTAGRL N S LM + K++RV+++LD PH ++ LDA TGQNA+ Q ++ Sbjct: 342 KGVDILIADTAGRLQNKSHLMEELKKIVRVMRKLDEETPHEIMLTLDACTGQNAVSQAKL 401 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF A DF Sbjct: 402 FHEAVGLTGISLTKLDGTAKGGVIFAIADQFDIPIRYIGVGEGIEDLRPFKADDF 456 >gi|121533798|ref|ZP_01665625.1| signal recognition particle-docking protein FtsY [Thermosinus carboxydivorans Nor1] gi|121307789|gb|EAX48704.1| signal recognition particle-docking protein FtsY [Thermosinus carboxydivorans Nor1] Length = 307 Score = 242 bits (618), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 133/305 (43%), Positives = 190/305 (62%), Gaps = 9/305 (2%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + KL G T E I +I+ ++DD +ELE +L+ +D+G+ ++++ Sbjct: 3 MGFFDKLKAGLEKTRKNFTEKIEQLITGYTKIDDEFLDELEAVLLSADVGIKTTATLMKD 62 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVILVVGVNGVGKT 125 + +++ L V L ++ LS+ W P VILVVGVNGVGKT Sbjct: 63 IRQAIKNREIETPEQLKPV--LQERLCAVLSE--GWTGMRLAPEPPTVILVVGVNGVGKT 118 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL GLKV+LAAGDTFR+AAIDQL+IW R A+ + GSD AA+A++A Sbjct: 119 TTIGKLGNYYRQLGLKVLLAAGDTFRAAAIDQLEIWGQRIGAEVIKHSEGSDPAAVAFDA 178 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + A+A+K +++IIDTAGRLH S LM + K+ RV+ R P APH L VLDATTGQNA Sbjct: 179 VQAAKARKAEIVIIDTAGRLHTKSNLMEELKKIRRVIAREIPDAPHETLLVLDATTGQNA 238 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + Q ++F G TG+++TK+DGTA+GG ++ I +PV ++GVGEG+NDL PF A+D Sbjct: 239 ISQAKLFSEATGVTGVVLTKLDGTAKGGVVVAIKTELGLPVKWVGVGEGVNDLRPFNAQD 298 Query: 306 FSAVI 310 F+A + Sbjct: 299 FAAAL 303 >gi|89068002|ref|ZP_01155419.1| signal recognition particle-docking protein FtsY [Oceanicola granulosus HTCC2516] gi|89046241|gb|EAR52298.1| signal recognition particle-docking protein FtsY [Oceanicola granulosus HTCC2516] Length = 384 Score = 242 bits (618), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 123/275 (44%), Positives = 186/275 (67%), Gaps = 1/275 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E LE+LLI +D+GV A ++ + Y K VS + + ++ + +++ P Sbjct: 109 RVLDDEMLESLEELLITADLGVETAVRVTANIAEDLYGKRVSTEEIKRALAAEVARIMEP 168 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +++P + RP V+LVVGVNG GKTT IGKL+ + AG V++AAGDTFR+AA++QL Sbjct: 169 VARPLPL-YPSRPQVVLVVGVNGSGKTTTIGKLASQFRAAGKNVVIAAGDTFRAAAVEQL 227 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W +R + + GSD A+LA++A +AQA D+L+IDTAGRL N + LM + K+ Sbjct: 228 QVWGERAGVPVLTAPEGSDPASLAFDALGKAQADGADLLLIDTAGRLQNRADLMEELAKI 287 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+++ DP APH+ L VLDATTGQN L QV+ F +A +GL+MTK+DGTA+GG L+ + Sbjct: 288 VRVIRKKDPDAPHNTLLVLDATTGQNGLSQVKTFQQLADVSGLVMTKLDGTAKGGVLVAL 347 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 +P++ +GVGE I+DL PF ++F+ + G Sbjct: 348 ADRFGLPIHAIGVGEQIDDLAPFDPQEFADALVGV 382 >gi|54307374|ref|YP_128394.1| putative cell division protein FtsY [Photobacterium profundum SS9] gi|46911794|emb|CAG18592.1| putative cell division protein FtsY [Photobacterium profundum SS9] Length = 427 Score = 242 bits (618), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 125/299 (41%), Positives = 191/299 (63%), Gaps = 1/299 (0%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 +S + +L +G T G + S +++DD + EELE+ L+ + +G+ I+E Sbjct: 120 QSDGFFARLMRGLKKTKTNFGSGFFGLFSGKKIDDELFEELEEQLLIAXVGMDXTLXIIE 179 Query: 69 ELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L K ++ LY + E + ML + +P D + +P VIL+VGVNGVGKTT Sbjct: 180 NLTDKAXRNELKDGEALYGLLKEELADMLSTVEQPLIVDTTQKPFVILMVGVNGVGKTTT 239 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+K+ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + Sbjct: 240 IGKLAKQFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNGVPVVAQHTGADSASVIFDAIE 299 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 AQA+ VDV+I DTAGRL N LM + K++RV+K++DP APH ++ +DA TGQNA+ Sbjct: 300 SAQARNVDVVIADTAGRLQNKGHLMEELRKIVRVMKKVDPAAPHEIMLTVDAGTGQNAIS 359 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++F VA +G+ ++K+DGTA+GG + I IP+ ++G+GEGI+DL PFVA +F Sbjct: 360 QAKLFSEVAPVSGITISKLDGTAKGGVIFAIANQFSIPIRYIGIGEGIDDLRPFVADEF 418 >gi|261344966|ref|ZP_05972610.1| cell division transporter substrate-binding protein FtsY [Providencia rustigianii DSM 4541] gi|282567109|gb|EFB72644.1| cell division transporter substrate-binding protein FtsY [Providencia rustigianii DSM 4541] Length = 701 Score = 242 bits (618), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 128/295 (43%), Positives = 190/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 399 FFSRLKKGLLKTRQNLGLGFFSLFSGKKIDDDLFEELEEQLLIADVGVDTTRKIINNLTA 458 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K++ LY + E + +L + KP + +P+VIL+VGVNGVGKTT IGKL Sbjct: 459 HASRKELKDAEALYGKLREEMSDILATVDKPLVIE-GKKPYVILMVGVNGVGKTTTIGKL 517 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D A++ ++A + AQA Sbjct: 518 ARQYQSEGKSVMLAAGDTFRAAAVEQLQVWGERNKISVVAQHTGADPASVIFDAIQSAQA 577 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K VDVL+ DTAGRL N + LM + K++RV+++LD APH ++ LDA+TGQNA+ Q ++ Sbjct: 578 KGVDVLLADTAGRLQNKAHLMEELKKIVRVMRKLDDTAPHEIMLTLDASTGQNAVSQAKL 637 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I IP+ ++G+GEGI DL PF A DF Sbjct: 638 FNDAVGLTGITLTKLDGTAKGGVIFSIADQFGIPIRYIGIGEGIEDLRPFKADDF 692 >gi|68249364|ref|YP_248476.1| cell division protein FtsY [Haemophilus influenzae 86-028NP] gi|68057563|gb|AAX87816.1| cell division protein FtsY [Haemophilus influenzae 86-028NP] Length = 414 Score = 242 bits (618), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 126/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G +++DD + EELE+ L+ +DIGV KIV+ L Sbjct: 110 FFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIVKNLTE 169 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K++ +LY ++ + +L P+++P D + +P+VIL+VGVNGVGKTT IGKL Sbjct: 170 HASRKELQDAELLYQQLKVEMADILEPVARPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 229 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R V GSD+A++ ++A + A A Sbjct: 230 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 289 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+LI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 290 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 349 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I K+P+ ++GVGE I DL F AK+F Sbjct: 350 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 404 >gi|329896518|ref|ZP_08271576.1| Signal recognition particle receptor protein FtsY [gamma proteobacterium IMCC3088] gi|328921735|gb|EGG29108.1| Signal recognition particle receptor protein FtsY [gamma proteobacterium IMCC3088] Length = 375 Score = 242 bits (618), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 125/301 (41%), Positives = 191/301 (63%), Gaps = 3/301 (0%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKI 66 +E W +L +G + T +L G+ ++ R+ +D + E+LE L+ +D+G+ I Sbjct: 66 AEKSGWYARLKQGLSRTRGQLSSGLGNLFLGRKVIDADLLEDLESTLLMADVGIEATTHI 125 Query: 67 VEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 VE+L + K+++ +L + + + M+ P K + P VIL+VGVNG GKT Sbjct: 126 VEQLTAQVSRKELADGDALLRALKQALTNMVGPYEKALPL-AATAPTVILMVGVNGAGKT 184 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+++ G VMLAAGDTFR+AA++QL++W +R + V G+D+A++ ++A Sbjct: 185 TTIGKLAQRYKAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQHTGADSASVIFDA 244 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + AQA+ VDVLI DTAGRLHN LM + K++RV+K+L+P APH V+ VLDAT GQNA Sbjct: 245 LQAAQARGVDVLIADTAGRLHNKDNLMEELKKVVRVMKKLNPEAPHEVMLVLDATMGQNA 304 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + Q + F A +G+ +TK+DGTA+GG + I IP+ ++GVGE + DL PF A+ Sbjct: 305 IAQAQHFKAAVDVSGITLTKLDGTAKGGVIFAIAHKLGIPIRYIGVGESLEDLRPFEAEP 364 Query: 306 F 306 F Sbjct: 365 F 365 >gi|145634821|ref|ZP_01790529.1| cell division protein [Haemophilus influenzae PittAA] gi|145267987|gb|EDK07983.1| cell division protein [Haemophilus influenzae PittAA] Length = 410 Score = 242 bits (618), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G +++DD + EELE+ L+ +DIGV KI++ L Sbjct: 106 FFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 165 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K++ +LY ++ + +L P+++P D + +P+VIL+VGVNGVGKTT IGKL Sbjct: 166 HASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 225 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R V GSD+A++ ++A + A A Sbjct: 226 ARKFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVSQSTGSDSASVIFDAMQSAAA 285 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+LI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 286 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 345 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I K+P+ ++GVGE I DL F AK+F Sbjct: 346 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 400 >gi|145640856|ref|ZP_01796438.1| cell division protein FtsY [Haemophilus influenzae R3021] gi|145274370|gb|EDK14234.1| cell division protein FtsY [Haemophilus influenzae 22.4-21] Length = 399 Score = 242 bits (618), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 126/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G +++DD + EELE+ L+ +DIGV KI++ L Sbjct: 96 FFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 155 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K++ +LY ++ + +L P++KP D + +P+VIL+VGVNGVGKTT IGKL Sbjct: 156 HASRKELQDAELLYQQLKVEMANILEPVAKPLVIDNTKKPYVILMVGVNGVGKTTTIGKL 215 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R V GSD+A++ ++A + A A Sbjct: 216 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 275 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+LI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 276 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 335 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I K+P+ ++GVGE I DL F AK+F Sbjct: 336 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 390 >gi|83955621|ref|ZP_00964201.1| signal recognition particle-docking protein FtsY [Sulfitobacter sp. NAS-14.1] gi|83839915|gb|EAP79091.1| signal recognition particle-docking protein FtsY [Sulfitobacter sp. NAS-14.1] Length = 388 Score = 242 bits (618), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 123/275 (44%), Positives = 189/275 (68%), Gaps = 1/275 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E+LE+LLI +D+GV A ++ + R+ K +SV + ++ + +++ P Sbjct: 112 RVLDDEMLEQLEELLISTDMGVDTALRVTANMAEGRFGKRLSVDEIKRLMATEVARIMDP 171 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 ++KP ++ P V+LVVGVNG GKTT IGKL+ + AG V++AAGDTFR+AA++QL Sbjct: 172 IAKPLPI-YAKTPQVVLVVGVNGSGKTTTIGKLASQFKAAGKNVVIAAGDTFRAAAVEQL 230 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W DR + + GSD A+LA++A QA+ D+L+IDTAGRL N LM + K+ Sbjct: 231 QVWGDRADVPVLTAGQGSDPASLAFDAMTQAERDGADLLLIDTAGRLQNRGDLMEELAKI 290 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+++ DP APH+ L VLDATTGQNAL QV++F ++ +GL+MTK+DGTA+GG L+ + Sbjct: 291 VRVIRKKDPSAPHNTLLVLDATTGQNALNQVKVFQEISDVSGLVMTKLDGTAKGGVLVAL 350 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 +P++ +GVGE I+DL+PF ++F+ + G Sbjct: 351 ADKFGLPIHAIGVGEQIDDLQPFDPQEFADALMGL 385 >gi|83942798|ref|ZP_00955259.1| signal recognition particle-docking protein FtsY [Sulfitobacter sp. EE-36] gi|83846891|gb|EAP84767.1| signal recognition particle-docking protein FtsY [Sulfitobacter sp. EE-36] Length = 398 Score = 242 bits (617), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 123/275 (44%), Positives = 189/275 (68%), Gaps = 1/275 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E+LE+LLI +D+GV A ++ + R+ K +SV + ++ + +++ P Sbjct: 122 RVLDDEMLEQLEELLISTDMGVDTALRVTANMAEGRFGKRLSVDEIKRLMATEVARIMDP 181 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 ++KP ++ P V+LVVGVNG GKTT IGKL+ + AG V++AAGDTFR+AA++QL Sbjct: 182 IAKPLPI-YAKTPQVVLVVGVNGSGKTTTIGKLASQFKAAGKNVVIAAGDTFRAAAVEQL 240 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W DR + + GSD A+LA++A QA+ D+L+IDTAGRL N LM + K+ Sbjct: 241 QVWGDRADVPVLTAGQGSDPASLAFDAMTQAERDGADLLLIDTAGRLQNRGDLMEELAKI 300 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+++ DP APH+ L VLDATTGQNAL QV++F ++ +GL+MTK+DGTA+GG L+ + Sbjct: 301 VRVIRKKDPSAPHNTLLVLDATTGQNALNQVKVFQEISDVSGLVMTKLDGTAKGGVLVAL 360 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 +P++ +GVGE I+DL+PF ++F+ + G Sbjct: 361 ADKFGLPIHAIGVGEQIDDLQPFDPQEFADALMGL 395 >gi|145636676|ref|ZP_01792343.1| cell division protein FtsY [Haemophilus influenzae PittHH] gi|145270202|gb|EDK10138.1| cell division protein FtsY [Haemophilus influenzae PittHH] Length = 400 Score = 242 bits (617), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G +++DD + EELE+ L+ +DIGV KI++ L Sbjct: 96 FFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 155 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K++ +LY ++ + +L P+++P D + +P+VIL+VGVNGVGKTT IGKL Sbjct: 156 HASRKELQDAELLYQQLKVEMADILEPVARPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 215 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R V GSD+A++ ++A + A A Sbjct: 216 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 275 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+LI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 276 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 335 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I K+P+ ++GVGE I DL F AK+F Sbjct: 336 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 390 >gi|260914701|ref|ZP_05921166.1| FtsY protein [Pasteurella dagmatis ATCC 43325] gi|260631205|gb|EEX49391.1| FtsY protein [Pasteurella dagmatis ATCC 43325] Length = 476 Score = 242 bits (617), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 126/295 (42%), Positives = 189/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G +++DD + EELE+ L+ +D+GV KI+ L Sbjct: 173 FFSRLVKGLLKTKQNIGVGFRSFFLGKKIDDELFEELEEQLLVADLGVPTTTKIINNLTQ 232 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + +LY ++ + ++L P+++P D S +P+VIL+VGVNGVGKTT IGKL Sbjct: 233 HASRKQLQDAELLYQQLKVEMAEILKPVAQPLLIDQSKKPYVILMVGVNGVGKTTTIGKL 292 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K + G VMLAAGDTFR+AA++QL++W +R + V GSD+A++ ++A + A A Sbjct: 293 ARKFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAA 352 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 353 RNVDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 412 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + I +P+ ++GVGE I DL F A +F Sbjct: 413 FHEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLREFKADEF 467 >gi|148826589|ref|YP_001291342.1| cell division protein FtsY [Haemophilus influenzae PittEE] gi|148716749|gb|ABQ98959.1| cell division protein FtsY [Haemophilus influenzae PittEE] Length = 400 Score = 242 bits (617), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G +++DD + EELE+ L+ +DIGV KI++ L Sbjct: 96 FFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 155 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K++ +LY ++ + +L P+++P D + +P+VIL+VGVNGVGKTT IGKL Sbjct: 156 HASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 215 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R V GSD+A++ ++A + A A Sbjct: 216 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 275 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+LI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 276 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 335 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I K+P+ ++GVGE I DL F AK+F Sbjct: 336 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 390 >gi|330985908|gb|EGH84011.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. lachrymans str. M301315] Length = 502 Score = 242 bits (617), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 127/305 (41%), Positives = 192/305 (62%), Gaps = 2/305 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62 Q+ + + + +L +G + TS + EG+ + + + +DD + EE+E L+ +D+GV Sbjct: 187 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 246 Query: 63 AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 I++ L K K ++ + LY + + ML P+ +P H+ VILVVGVNG Sbjct: 247 TSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKSFVILVVGVNG 306 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 307 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 366 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA T Sbjct: 367 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 426 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F Sbjct: 427 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 486 Query: 302 VAKDF 306 A+ F Sbjct: 487 EAEPF 491 >gi|308188478|ref|YP_003932609.1| Cell division protein ftsY [Pantoea vagans C9-1] gi|308058988|gb|ADO11160.1| Cell division protein ftsY [Pantoea vagans C9-1] Length = 564 Score = 242 bits (617), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 124/300 (41%), Positives = 189/300 (63%), Gaps = 12/300 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + +ELE+ L+ +D+GV ++I+ L Sbjct: 262 FFSRLKRSLVKTRQNLGSGFISLFRGKKIDDDLFDELEEQLLIADVGVDTTRRIITNLTQ 321 Query: 73 KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126 + K + LY +++ ++ K+ PL D S + P VIL+VGVNGVGKTT Sbjct: 322 QANRKQLRDAEALYGLLKAEMASILAKVDAPL------DVSGKTPFVILMVGVNGVGKTT 375 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A Sbjct: 376 TIGKLARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAI 435 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+++ VDVLI DTAGRL N S LM + K+ RV+K+LD APH V+ LDA+TGQNA+ Sbjct: 436 QAAKSRGVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDDSAPHEVMLTLDASTGQNAV 495 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q +F+ G TG+ +TK+DGTA+GG + + IP+ ++GVGEGI DL PF A+DF Sbjct: 496 SQARLFNEAVGLTGIALTKLDGTAKGGVIFSVADQFGIPIRYIGVGEGIEDLRPFKAEDF 555 >gi|145632121|ref|ZP_01787856.1| cell division protein [Haemophilus influenzae 3655] gi|144987028|gb|EDJ93558.1| cell division protein [Haemophilus influenzae 3655] Length = 405 Score = 242 bits (617), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G +++DD + EELE+ L+ +DIGV KI++ L Sbjct: 101 FFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 160 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K++ +LY ++ + +L P+++P D + +P+VIL+VGVNGVGKTT IGKL Sbjct: 161 HASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 220 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R V GSD+A++ ++A + A A Sbjct: 221 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 280 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+LI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 281 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 340 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I K+P+ ++GVGE I DL F AK+F Sbjct: 341 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 395 >gi|167622228|ref|YP_001672522.1| signal recognition particle-docking protein FtsY [Shewanella halifaxensis HAW-EB4] gi|167352250|gb|ABZ74863.1| signal recognition particle-docking protein FtsY [Shewanella halifaxensis HAW-EB4] Length = 597 Score = 241 bits (616), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 127/292 (43%), Positives = 190/292 (65%), Gaps = 1/292 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L +G TS + G + S +++DD + EELE+ L+ +D+GV ++++ L + Sbjct: 291 RLKRGLKRTSESIGSGFIGLFSGKKIDDDLFEELEEQLLIADVGVETTTRLIKNLTEQAS 350 Query: 76 AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K + LY++ E + K L P+S P + + P VIL+VGVNGVGKTT IGKL+K+ Sbjct: 351 RKQLKDGEALYELLREEMQKTLEPVSVPLVPENADGPFVILMVGVNGVGKTTTIGKLAKQ 410 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A+KV Sbjct: 411 YQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVLFDALQAARARKV 470 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 DVLI DTAGRL N + LM + K++RV+K+ D APH V+ LDA+TGQNA+ Q ++F Sbjct: 471 DVLIADTAGRLQNKAHLMDELKKVVRVMKKQDETAPHEVMLTLDASTGQNAISQAQLFQE 530 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G TG+ ++K+DGTA+GG + I IP+ +GVGE I+DL F AKDF Sbjct: 531 AVGVTGITISKLDGTAKGGVIFAIADKFGIPIRHIGVGEQIDDLRTFDAKDF 582 >gi|119503518|ref|ZP_01625601.1| signal recognition particle-docking protein FtsY [marine gamma proteobacterium HTCC2080] gi|119460580|gb|EAW41672.1| signal recognition particle-docking protein FtsY [marine gamma proteobacterium HTCC2080] Length = 339 Score = 241 bits (616), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 122/293 (41%), Positives = 186/293 (63%), Gaps = 3/293 (1%) Query: 16 KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 + +G + T + GI + R+ +D+ V E LED L+ +D+G+ Q+IV ++ + Sbjct: 40 RFRRGLSRTGGQFSNGIGALFLGRKVIDENVLEALEDQLLTADVGIEATQRIVSDITERI 99 Query: 75 YAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 K++S + + ++ + +L P +P D ++P VILVVGVNG GKTT IGKL+ Sbjct: 100 SRKELSDGAAVMEATKSALLDILTPCEQPLAPD-DNKPFVILVVGVNGAGKTTTIGKLAH 158 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 + G +VMLAAGDTFR+AA++QL+ W +R + G+D+A++ ++A + A+A+ Sbjct: 159 RFKAEGKQVMLAAGDTFRAAAVEQLQAWGERNEVPVIAQHTGADSASVLFDAVQAAKARG 218 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 VD+LI DTAGRL N S LM + K++RV++++DP APH L VLDA TGQNA+ Q E F Sbjct: 219 VDILIADTAGRLQNKSHLMDELEKVVRVMRKVDPQAPHETLLVLDAGTGQNAVSQAEEFD 278 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G TG+ ++K+DGTARGG + I P+ F+G+GE + DL+PF A F Sbjct: 279 RTVGVTGIALSKLDGTARGGVIFAIAQRLARPIRFVGIGEAVTDLQPFDANAF 331 >gi|254486217|ref|ZP_05099422.1| signal recognition particle-docking protein FtsY [Roseobacter sp. GAI101] gi|214043086|gb|EEB83724.1| signal recognition particle-docking protein FtsY [Roseobacter sp. GAI101] Length = 399 Score = 241 bits (616), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 125/274 (45%), Positives = 188/274 (68%), Gaps = 1/274 (0%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R LDD + E+LE+LLI +D+GV A ++ + R+ K +SV + ++ I +++ P Sbjct: 123 RVLDDEMLEQLEELLISTDMGVDTALRVTANMAEGRFGKRLSVDEIKRLLAAEIARIMDP 182 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 ++KP +S P V+LVVGVNG GKTT IGKL+ + AG V++AAGDTFR+AA++QL Sbjct: 183 IAKPLPL-YSKTPQVVLVVGVNGSGKTTTIGKLASQFKAAGKHVVIAAGDTFRAAAVEQL 241 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W DR + + GSD A+LA+EA QA+ D+L+IDTAGRL N LM + K+ Sbjct: 242 QVWGDRAGVPVLTAAQGSDPASLAFEAMGQAERDGADLLLIDTAGRLQNRGDLMEELAKI 301 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV+++ D APH+ L VLDATTGQNAL QV++F ++ +GL+MTK+DGTA+GG L+ + Sbjct: 302 VRVIRKKDATAPHNTLLVLDATTGQNALNQVKVFQEISDVSGLVMTKLDGTAKGGVLVAL 361 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +P++ +GVGE I+DL+PF ++F+ + G Sbjct: 362 ADKFGLPIHAIGVGEQIDDLQPFDPQEFADALMG 395 >gi|145638433|ref|ZP_01794043.1| cell division protein [Haemophilus influenzae PittII] gi|145272762|gb|EDK12669.1| cell division protein [Haemophilus influenzae PittII] Length = 420 Score = 241 bits (616), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G +++DD + EELE+ L+ +DIGV KI++ L Sbjct: 116 FFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 175 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K++ +LY ++ + +L P+++P D + +P+VIL+VGVNGVGKTT IGKL Sbjct: 176 HASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 235 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R V GSD+A++ ++A + A A Sbjct: 236 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 295 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+LI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 296 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 355 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I K+P+ ++GVGE I DL F AK+F Sbjct: 356 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 410 >gi|309751571|gb|ADO81555.1| Signal recognition particle receptor FtsY [Haemophilus influenzae R2866] Length = 435 Score = 241 bits (616), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G +++DD + EELE+ L+ +DIGV KI++ L Sbjct: 131 FFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 190 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K++ +LY ++ + +L P+++P D + +P+VIL+VGVNGVGKTT IGKL Sbjct: 191 HASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 250 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R V GSD+A++ ++A + A A Sbjct: 251 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 310 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+LI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 311 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 370 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I K+P+ ++GVGE I DL F AK+F Sbjct: 371 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 425 >gi|88606999|ref|YP_505757.1| signal recognition particle-docking protein FtsY [Anaplasma phagocytophilum HZ] gi|88598062|gb|ABD43532.1| signal recognition particle-docking protein FtsY [Anaplasma phagocytophilum HZ] Length = 305 Score = 241 bits (616), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 127/301 (42%), Positives = 188/301 (62%), Gaps = 4/301 (1%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKI 66 S + S+ + L +G + TS +L EGI +I + +D + L DLLI +D+G VA Sbjct: 2 SSNESFWQSLKRGLSKTSARLSEGIRNIFGGKADVDQSTLKALRDLLISTDMGPDVADFF 61 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 +++ T ++ V+ + L SE I L P S P +H PH+IL+ GVNG GKTT Sbjct: 62 TQKISTLKFTDSVAEEVRLKLASE-IENFLQPRSAPIT--ITHTPHIILLCGVNGSGKTT 118 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 + KL+ K + V++ A DTFR+AA++QL +WA+R S V IG+DAA++AY+ Sbjct: 119 TVAKLAHKFMKKNMSVIIGACDTFRAAAVEQLNVWAERISCPIVTGTIGADAASVAYKTV 178 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 ++A + DV+IIDTAGRLHN+ LM + K+ RV++R D APH ++ VLDAT GQN Sbjct: 179 ERAVKEPFDVVIIDTAGRLHNHKNLMEELAKICRVIRRHDEKAPHDIILVLDATIGQNTF 238 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QVEMF + GLI+TK+DGTA+GG ++ + + + ++ +G GEGI DLE F A +F Sbjct: 239 TQVEMFSSFVDVGGLILTKLDGTAKGGVVLRVSQKYNLMIHAIGTGEGIEDLEDFSATNF 298 Query: 307 S 307 + Sbjct: 299 A 299 >gi|260581582|ref|ZP_05849379.1| signal recognition particle-docking protein FtsY [Haemophilus influenzae NT127] gi|260095175|gb|EEW79066.1| signal recognition particle-docking protein FtsY [Haemophilus influenzae NT127] Length = 414 Score = 241 bits (616), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G +++DD + EELE+ L+ +DIGV KI++ L Sbjct: 110 FFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 169 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K++ +LY ++ + +L P+++P D + +P+VIL+VGVNGVGKTT IGKL Sbjct: 170 HASRKELQDAELLYQQLKVEMADILEPVAQPLKIDSTKKPYVILMVGVNGVGKTTTIGKL 229 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R V GSD+A++ ++A + A A Sbjct: 230 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 289 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+LI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 290 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 349 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I K+P+ ++GVGE I DL F AK+F Sbjct: 350 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 404 >gi|157963791|ref|YP_001503825.1| signal recognition particle-docking protein FtsY [Shewanella pealeana ATCC 700345] gi|157848791|gb|ABV89290.1| signal recognition particle-docking protein FtsY [Shewanella pealeana ATCC 700345] Length = 643 Score = 241 bits (616), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 127/292 (43%), Positives = 189/292 (64%), Gaps = 1/292 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L +G TS + G + S +++DD + EELE+ L+ +D+GV ++++ L + Sbjct: 337 RLKRGLKRTSESIGSGFIGLFSGKKIDDDLFEELEEQLLIADVGVETTTRLIKNLTEQAS 396 Query: 76 AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K + LYD+ E + K L P+S P + + P VIL+VGVNGVGKTT IGKL+K+ Sbjct: 397 RKQLKDGEALYDLLREEMQKTLDPVSVPLIPENADGPFVILMVGVNGVGKTTTIGKLAKQ 456 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 + G VMLAAGDTFR+AA++QL++W R + G+D+A++ ++A + A+A+ V Sbjct: 457 YQEQGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVIAQHTGADSASVLFDALQAARARNV 516 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 DVLI DTAGRL N + LM + K++RV+K+ D APH V+ LDA+TGQNA+ Q ++F Sbjct: 517 DVLIADTAGRLQNKAHLMDELKKVVRVMKKQDEAAPHEVMLTLDASTGQNAISQAQLFQE 576 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G TG+ ++K+DGTA+GG + I IP+ +GVGE I+DL F AKDF Sbjct: 577 AVGVTGITISKLDGTAKGGVIFAIADKFGIPIRHIGVGEQIDDLRTFDAKDF 628 >gi|52424195|ref|YP_087332.1| FtsY protein [Mannheimia succiniciproducens MBEL55E] gi|52306247|gb|AAU36747.1| FtsY protein [Mannheimia succiniciproducens MBEL55E] Length = 468 Score = 241 bits (616), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 123/295 (41%), Positives = 189/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G + + +++DD + EELE+ L+ +DIGV KI++ L Sbjct: 164 FFSRLVKGLLKTKQNIGAGFLSLFTGKKIDDELFEELEEQLLIADIGVPTTAKIIKNLTE 223 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + + LY ++ + ++L P+ +P D +P+VIL+VGVNGVGKTT IGKL Sbjct: 224 HASRAQLKDTQALYQQLKVEMAEILKPVEQPLIVDTGRKPYVILMVGVNGVGKTTTIGKL 283 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R + V GSD+A++ ++A + A A Sbjct: 284 ARQFQQQGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAA 343 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + D+LI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 344 RNADILIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDAGTGQNAISQAKL 403 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + I +P+ ++GVGE I DL PF A++F Sbjct: 404 FHEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLRPFHAEEF 458 >gi|309973736|gb|ADO96937.1| Signal recognition particle receptor FtsY [Haemophilus influenzae R2846] Length = 400 Score = 241 bits (616), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 126/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G +++DD + EELE+ L+ +DIGV KI++ L Sbjct: 96 FFSRLVKGLLKTKQNIGAGFRGFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 155 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K++ +LY ++ + +L P++KP D + +P+VIL+VGVNGVGKTT IGKL Sbjct: 156 HASRKELQDAELLYQQLKVEMANILEPVAKPLVIDNTKKPYVILMVGVNGVGKTTTIGKL 215 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R V GSD+A++ ++A + A A Sbjct: 216 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 275 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+LI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 276 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 335 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I K+P+ ++GVGE I DL F AK+F Sbjct: 336 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 390 >gi|254362682|ref|ZP_04978769.1| cell division protein FtsY [Mannheimia haemolytica PHL213] gi|261493203|ref|ZP_05989730.1| cell division protein FtsY [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496553|ref|ZP_05992933.1| cell division protein FtsY [Mannheimia haemolytica serotype A2 str. OVINE] gi|153094301|gb|EDN75165.1| cell division protein FtsY [Mannheimia haemolytica PHL213] gi|261307756|gb|EEY09079.1| cell division protein FtsY [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311053|gb|EEY12229.1| cell division protein FtsY [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 498 Score = 241 bits (616), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 128/299 (42%), Positives = 195/299 (65%), Gaps = 10/299 (3%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71 + +L +G T + G + +++DD + EELE+ L+ +D+G+ QKI+ L Sbjct: 192 FFSRLIQGLIKTKQNIGSGFRNFFRGKKIDDELFEELEEQLLVADLGMPTTQKIINNLTQ 251 Query: 72 --TKRYAKDVSV--QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 TK+ KD + Q++ ++ E+ L P+++P + + +P+VIL+VGVNGVGKTT Sbjct: 252 HATKQQLKDADLLYQQLKVELGEV----LKPVAQPLVLE-AKKPYVILMVGVNGVGKTTT 306 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL++K G VMLAAGDTFR+AA++QL++W +R + V GSD+A++ ++A + Sbjct: 307 IGKLARKFQQEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQ 366 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A AK +DVLI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Sbjct: 367 SAAAKGIDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAIS 426 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++F+ G TG+ +TK+DGTA+GG + I IP+ F+GVGE I DL PF A++F Sbjct: 427 QAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEF 485 >gi|294138984|ref|YP_003554962.1| cell division protein FtsY [Shewanella violacea DSS12] gi|293325453|dbj|BAJ00184.1| cell division protein FtsY [Shewanella violacea DSS12] Length = 743 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 128/295 (43%), Positives = 189/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L +G TS + G + +++DD + EELE+ L+ +D+G+ ++++ L Sbjct: 436 FFARLKRGLKRTSENIGSGFVGLFKGKKIDDDLFEELEEQLLIADVGIETTTRLIDSLTE 495 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K + LY++ E + K L P+S P D + P VIL+VGVNGVGKTT IGKL Sbjct: 496 QASRKQLKDGEALYELLREEMQKTLDPVSIPLVPDNADGPFVILMVGVNGVGKTTTIGKL 555 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +K+ G VMLAAGDTFR+AA++QL++W R + G+D+A++ ++A + A+A Sbjct: 556 AKQYQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVIAQHTGADSASVVFDALQAARA 615 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +KVDVLI DTAGRL N + LM + K++RV+K+LD +APH V+ LDA TGQNA+ Q E Sbjct: 616 RKVDVLIADTAGRLQNKAHLMDELKKIVRVMKKLDENAPHEVMLTLDAGTGQNAISQAEF 675 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G TG+ ++K+DGTA+GG + I IP+ +GVGE I+DL F AKDF Sbjct: 676 FKKDVGVTGITISKLDGTAKGGVIFAIADKFGIPIRHIGVGEQIDDLRTFDAKDF 730 >gi|90407352|ref|ZP_01215537.1| Signal recognition particle GTPase [Psychromonas sp. CNPT3] gi|90311503|gb|EAS39603.1| Signal recognition particle GTPase [Psychromonas sp. CNPT3] Length = 507 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 125/299 (41%), Positives = 192/299 (64%), Gaps = 1/299 (0%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 + L + + + + L + G+ I +++D+ + EELE+ LI +D+GV KI+E Sbjct: 191 DKLGFFARFRQSLTKSRLTIGSGLFSIFKGKQIDEDLFEELEEQLIIADMGVETTLKIIE 250 Query: 69 ELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L K + LY + E + ++L + KP D S P+VIL+VGVNGVGKTT Sbjct: 251 NLTQHANRKQLKDAEALYSLLKEDLSEILATVEKPLVIDKSKSPYVILMVGVNGVGKTTT 310 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+KK GL VMLAAGDTFR+AA++QL++W DR + + + G+D+A++ ++A Sbjct: 311 IGKLAKKYQQQGLSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQQTGADSASVLFDAMD 370 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+A+ VDVLI DTAGRL N LM + K++R++++ D APH ++ +DA TGQNA+ Sbjct: 371 AARARGVDVLIADTAGRLQNKDHLMDELSKVVRIMRKKDASAPHEIMLTIDAGTGQNAIS 430 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QV +F+ G TG+ +TK+DGTA+GG + + K+P+ ++G GEGI+DL F A++F Sbjct: 431 QVNLFNKAVGLTGITLTKLDGTAKGGIIFSLADKFKLPIRYIGTGEGIDDLREFNAQEF 489 >gi|319775293|ref|YP_004137781.1| cell division protein FtsY [Haemophilus influenzae F3047] gi|317449884|emb|CBY86095.1| cell division protein FtsY [Haemophilus influenzae F3047] Length = 414 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 126/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G +++DD + EELE+ L+ +DIGV KI++ L Sbjct: 110 FFSRLVKGLLKTKQNIGAGFRGFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 169 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K++ +LY ++ + +L P++KP D + +P+VIL+VGVNGVGKTT IGKL Sbjct: 170 HASRKELQDAELLYQQLKVEMANILEPVAKPLVIDNTKKPYVILMVGVNGVGKTTTIGKL 229 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R V GSD+A++ ++A + A A Sbjct: 230 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 289 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+LI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 290 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 349 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I K+P+ ++GVGE I DL F AK+F Sbjct: 350 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 404 >gi|58698555|ref|ZP_00373456.1| signal recognition particle-docking protein FtsY [Wolbachia endosymbiont of Drosophila ananassae] gi|225630589|ref|YP_002727380.1| signal recognition particle docking protein FtsY [Wolbachia sp. wRi] gi|58534937|gb|EAL59035.1| signal recognition particle-docking protein FtsY [Wolbachia endosymbiont of Drosophila ananassae] gi|225592570|gb|ACN95589.1| signal recognition particle docking protein FtsY [Wolbachia sp. wRi] Length = 303 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 133/304 (43%), Positives = 191/304 (62%), Gaps = 3/304 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +S L KG TS + +G+ I S ++LD + +ELE+LLI DIG ++ I++ Sbjct: 1 MSLFGNLYKGLLKTSSRFSDGVKSIFSGKKKLDQSLLDELEELLISMDIGHKTSKLIIDR 60 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L + ++ K+V + + I +L P+ +P + +PH+I+V GVNG GKTT IG Sbjct: 61 LTSIKFDKEVEYNIITQQLVNEIEAILNPVVQPL--ILNKKPHIIMVCGVNGNGKTTTIG 118 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ K + VML A DTFR+AA +QL IWA+R+ V E GSD+A++AY A QA Sbjct: 119 KLAYKYKEMRKSVMLVACDTFRAAASEQLNIWAERSDCLIVTGEYGSDSASVAYRAVSQA 178 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 VDV++IDTAGRL NN LM + K+ R +K+LD APH V+ VLDATTGQNA Q+ Sbjct: 179 IKDNVDVVLIDTAGRLQNNVNLMEELSKIYRTIKKLDGTAPHDVILVLDATTGQNAYSQL 238 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F + TGLI+TK+DGTA+GG +I + +KI ++ +G+GE I DL F +K+F+ Sbjct: 239 EAFSKMVNVTGLIVTKLDGTAKGGVVIGLAEAYKIKLHAIGIGENIEDLREFTSKEFAEA 298 Query: 310 ITGC 313 + C Sbjct: 299 LFNC 302 >gi|319897733|ref|YP_004135930.1| cell division protein ftsy [Haemophilus influenzae F3031] gi|329122778|ref|ZP_08251350.1| cell division protein FtsY [Haemophilus aegyptius ATCC 11116] gi|317433239|emb|CBY81614.1| cell division protein FtsY [Haemophilus influenzae F3031] gi|327472042|gb|EGF17480.1| cell division protein FtsY [Haemophilus aegyptius ATCC 11116] Length = 414 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G +++DD + EELE+ L+ +DIGV KI++ L Sbjct: 110 FFSRLVKGLLKTKQNIGAGFRGFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 169 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K++ +LY ++ + +L P+++P D + +P+VIL+VGVNGVGKTT IGKL Sbjct: 170 HASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 229 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R V GSD+A++ ++A + A A Sbjct: 230 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 289 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+LI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 290 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 349 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I K+P+ ++GVGE I DL F AK+F Sbjct: 350 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 404 >gi|16272709|ref|NP_438927.1| cell division protein FtsY [Haemophilus influenzae Rd KW20] gi|260579859|ref|ZP_05847689.1| signal recognition particle-docking protein FtsY [Haemophilus influenzae RdAW] gi|1169764|sp|P44870|FTSY_HAEIN RecName: Full=Cell division protein ftsY homolog gi|1573776|gb|AAC22426.1| cell division protein (ftsY) [Haemophilus influenzae Rd KW20] gi|260093143|gb|EEW77076.1| signal recognition particle-docking protein FtsY [Haemophilus influenzae RdAW] Length = 414 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G +++DD + EELE+ L+ +DIGV KI++ L Sbjct: 110 FFSRLVKGLLKTKQNIGAGFRGFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 169 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K++ +LY ++ + +L P+++P D + +P+VIL+VGVNGVGKTT IGKL Sbjct: 170 HASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 229 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R V GSD+A++ ++A + A A Sbjct: 230 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 289 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+LI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 290 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 349 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I K+P+ ++GVGE I DL F AK+F Sbjct: 350 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 404 >gi|83643465|ref|YP_431900.1| signal recognition particle-docking protein FtsY [Hahella chejuensis KCTC 2396] gi|83631508|gb|ABC27475.1| signal recognition particle-docking protein FtsY [Hahella chejuensis KCTC 2396] Length = 376 Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 126/296 (42%), Positives = 192/296 (64%), Gaps = 3/296 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 W+ ++ G + T + + + + + S+ +D+ + EE+E LL+ +D+G+ +I + + Sbjct: 75 WLTRVRSGLSKTRGQFSQNLMALFAGSKAIDEELLEEIETLLLSADVGIEATTQITQAIT 134 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + LYD + E + +L P P + + P+VILVVGVNGVGKTT IGK Sbjct: 135 EKLDRNQLKDSSALYDALKEELRGLLEPCCSPLQIE-NKTPYVILVVGVNGVGKTTTIGK 193 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K G V+LAAGDTFR+AA++QL++W +R + + G+D+A++ ++A + A+ Sbjct: 194 LANKFQQEGRSVVLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVIFDAVQAAK 253 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 ++ VDV+I DTAGRL N LMA + K++RV+K+ DP APH VL VLDA TGQNAL Q + Sbjct: 254 SRGVDVVIADTAGRLQNKENLMAELEKVVRVIKKHDPDAPHEVLLVLDAGTGQNALSQAQ 313 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F G TG+ +TK+DGTA+GG L I H +P+ ++GVGEGI+DL PF A +F Sbjct: 314 LFRQAVGVTGIAITKLDGTAKGGILFAIAKQHGLPIRYIGVGEGIDDLRPFDASEF 369 >gi|229845814|ref|ZP_04465926.1| cell division protein FtsY [Haemophilus influenzae 7P49H1] gi|229810818|gb|EEP46535.1| cell division protein FtsY [Haemophilus influenzae 7P49H1] Length = 400 Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G +++DD + EELE+ L+ +DIGV KI++ L Sbjct: 96 FFSRLVKGLLKTKQNVGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 155 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K++ +LY ++ + +L P+++P D + +P+VIL+VGVNGVGKTT IGKL Sbjct: 156 HASRKELQDAELLYQQLKVEMVDILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 215 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R V GSD+A++ ++A + A A Sbjct: 216 ARKFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVSQSTGSDSASVIFDAMQSAAA 275 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+LI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 276 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 335 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I K+P+ ++GVGE I DL F AK+F Sbjct: 336 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 390 >gi|301169485|emb|CBW29086.1| cell division protein FtsY [Haemophilus influenzae 10810] Length = 414 Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G +++DD + EELE+ L+ +DIGV KI++ L Sbjct: 110 FFSRLVKGLLKTKQNIGAGFRGFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 169 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K++ +LY ++ + +L P+++P D + +P+VIL+VGVNGVGKTT IGKL Sbjct: 170 HASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 229 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R V GSD+A++ ++A + A A Sbjct: 230 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 289 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+LI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 290 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 349 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I K+P+ ++GVGE I DL F AK+F Sbjct: 350 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 404 >gi|239946696|ref|ZP_04698449.1| signal recognition particle-docking protein FtsY [Rickettsia endosymbiont of Ixodes scapularis] gi|239920972|gb|EER20996.1| signal recognition particle-docking protein FtsY [Rickettsia endosymbiont of Ixodes scapularis] Length = 303 Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 134/303 (44%), Positives = 194/303 (64%), Gaps = 3/303 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 +S KL + + TS K+ EGI I ++LD EELE+LLI SD+ V+V I+EE Sbjct: 2 ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAETLEELEELLISSDMSVSVVTNIIEEF 61 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++ K++ V ++EL+ + L PF D +++ +VILV GVNG GKTT IGK Sbjct: 62 KKVKFDKEIDSDTVKDALAELVEQQLSKSEIPFTLD-ANKLNVILVCGVNGAGKTTTIGK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ S G KV +AA DTFR+AA++QL W DR +A + E +D A++AY A +++ Sbjct: 121 LAAMYSAQGKKVAVAACDTFRAAAVNQLSTWVDRANALLITGEESADPASVAYRAMEESI 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249 + +D+L IDTAGRLHN LM + K+++V+K+LD +AP HS+L V+DA TGQN QV Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSIL-VIDAITGQNTYNQV 239 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F+ TGLI+TK+DG+A+ G L+ +V +PVYF+G+GE I DL+ F DF+ Sbjct: 240 EHFNDATNLTGLIVTKLDGSAKAGVLVGVVQKFNLPVYFIGIGEKIEDLKKFNRHDFAKS 299 Query: 310 ITG 312 + G Sbjct: 300 LVG 302 >gi|87121171|ref|ZP_01077062.1| cell division protein FtsY [Marinomonas sp. MED121] gi|86163663|gb|EAQ64937.1| cell division protein FtsY [Marinomonas sp. MED121] Length = 439 Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 133/308 (43%), Positives = 198/308 (64%), Gaps = 9/308 (2%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 A L+W +++ G + T L G+ + I+ S+++DD + EELE L+ +D+GV Q Sbjct: 125 ADSGLTWAQRVKAGLSRTRNGLGSGLANLIVGSKQIDDDLLEELETQLLMADVGVEATQS 184 Query: 66 IVEELLTKRYAKDVSVQRVL-----YDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVG 118 ++ L K K++ L +++S+++ PL S+P + P+VIL+VG Sbjct: 185 LIATLTEKMNRKELKDADALMAALKHELSQMLASSAKPLTLSEP-EVEGKKTPYVILMVG 243 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNGVGKTT IGKL+KK G KVMLAAGDTFR+AA++QL++W +R V + GSD+ Sbjct: 244 VNGVGKTTTIGKLTKKFQAEGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVVAQQTGSDS 303 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 A++ ++A A+AK DV+I DTAGRL N S LM + K++RV+K+LD +APH V+ VLD Sbjct: 304 ASVIFDAIDSARAKGFDVVIADTAGRLQNKSNLMNELSKVVRVMKKLDDNAPHEVMLVLD 363 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A TGQNA+ Q ++F G +G+ +TK+DGTA+GG + I +IP+ F+GVGE ++DL Sbjct: 364 AGTGQNAISQAKLFSEAVGVSGITLTKLDGTAKGGIIFAIAKEFEIPIRFIGVGEQVDDL 423 Query: 299 EPFVAKDF 306 F A F Sbjct: 424 RAFDADVF 431 >gi|315178771|gb|ADT85685.1| signal recognition particle GTPase [Vibrio furnissii NCTC 11218] Length = 403 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 127/304 (41%), Positives = 196/304 (64%), Gaps = 1/304 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ Sbjct: 91 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLVADVGMDTT 150 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+ L K + + LY V + + ++L + +P D S P VIL+VGVNGV Sbjct: 151 LKIIASLTEKSSRQQLRDGEALYGVLKDEMAEILSTVEQPLVIDSSKTPFVILMVGVNGV 210 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ G KVMLAAGDTFR+AA++QL+IW +R + + G+D+A++ Sbjct: 211 GKTTTIGKLAKQFQAEGKKVMLAAGDTFRAAAVEQLQIWGERNNVPVIAQHTGADSASVI 270 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N + LM + K++RV+K++D APH ++ LDA TG Sbjct: 271 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 330 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI+DL PF Sbjct: 331 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEGIDDLRPFA 390 Query: 303 AKDF 306 ++F Sbjct: 391 TQEF 394 >gi|312884400|ref|ZP_07744105.1| cell division protein FtxY [Vibrio caribbenthicus ATCC BAA-2122] gi|309367922|gb|EFP95469.1| cell division protein FtxY [Vibrio caribbenthicus ATCC BAA-2122] Length = 397 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 124/296 (41%), Positives = 194/296 (65%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + A T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 93 SFFARLKRSLAKTKTNIGAGFFGLFKGKQIDDDLFEELEEQLLIADVGMDTTMKIIGSLT 152 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K +D+ LY + + + +ML + +P + +P VIL+VGVNGVGKTT IGK Sbjct: 153 EKASRRDLKDGEALYGLLKDEMTEMLSTVEQPLVVNNEAKPFVILMVGVNGVGKTTTIGK 212 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+ Sbjct: 213 LAKQFQAEGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIESAK 272 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 AK VDV+I DTAGRL N + LM + K++RV++++D APH ++ LDA TGQNA+ Q + Sbjct: 273 AKGVDVVIADTAGRLQNKANLMEELKKIVRVMQKVDSTAPHEIMLTLDAGTGQNAISQAK 332 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + + +IP+ ++GVGEGI+DL PF +++F Sbjct: 333 LFSEVAPLTGIALTKLDGTAKGGVIFSLADQFQIPIRYIGVGEGIDDLRPFESQEF 388 >gi|213967799|ref|ZP_03395946.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. tomato T1] gi|301382436|ref|ZP_07230854.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. tomato Max13] gi|302061172|ref|ZP_07252713.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. tomato K40] gi|302132035|ref|ZP_07258025.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927575|gb|EEB61123.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. tomato T1] Length = 513 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 126/298 (42%), Positives = 189/298 (63%), Gaps = 2/298 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L +G + TS + EG+ + + + +DD + EE+E L+ +D+GV I++ Sbjct: 205 VGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIKS 264 Query: 70 LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L K K ++ + LY + + ML + +P H+P VILVVGVNG GKTT I Sbjct: 265 LTQKVARKQLTDAQALYTSLQGELAAMLKLVEQPLVIKAEHKPFVILVVGVNGAGKTTTI 324 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + Sbjct: 325 GKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQA 384 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q Sbjct: 385 AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQ 444 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A+ F Sbjct: 445 AKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 502 >gi|88797601|ref|ZP_01113190.1| signal recognition particle receptor FtsY [Reinekea sp. MED297] gi|88779773|gb|EAR10959.1| signal recognition particle receptor FtsY [Reinekea sp. MED297] Length = 330 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 134/310 (43%), Positives = 200/310 (64%), Gaps = 5/310 (1%) Query: 12 SWIRKLTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 SW +++ G + T G+ T ++ + LDD EELE LL+ SD+G+ Q I+++L Sbjct: 24 SWFQRVKNGLSKTRSGFSNGLATALLGRKTLDDDTLEELETLLLSSDVGIEATQTILDDL 83 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + + K+++ L + + E + + L P+ +P D +P VILVVGVNGVGKTT IG Sbjct: 84 VERTSRKELNDNNALMNALRETLVEQLTPVEQPLQIDTGKQPFVILVVGVNGVGKTTTIG 143 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 K++++ G VMLAAGDTFR+AA++QL+ W +R + + G+D+A++ ++A + A Sbjct: 144 KMTQRFQSEGKSVMLAAGDTFRAAAVEQLQTWGERHNVPVIAQHTGADSASVIFDAVQAA 203 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +++ VDVLI DTAGRLHN LMA + K++RV+K++D APH VL VLDA TGQNA+ Q Sbjct: 204 KSRGVDVLIADTAGRLHNKDNLMAELEKVLRVMKKIDDSAPHEVLLVLDAGTGQNAVAQA 263 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F A TG+ +TK+DGTARGG + + IPV F+GVGE DL+ F A++F Sbjct: 264 ESFTKAAPLTGIALTKLDGTARGGIIFALARKFGIPVRFIGVGEQAEDLDRFSAQEF--- 320 Query: 310 ITGCLDYGEE 319 ++ LD +E Sbjct: 321 VSALLDSDDE 330 >gi|242241271|ref|YP_002989452.1| signal recognition particle-docking protein FtsY [Dickeya dadantii Ech703] gi|242133328|gb|ACS87630.1| signal recognition particle-docking protein FtsY [Dickeya dadantii Ech703] Length = 432 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 126/297 (42%), Positives = 186/297 (62%), Gaps = 6/297 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + +ELE+ L+ +D+GV +KI+E L Sbjct: 130 FFARLKRSLVKTRQNLGSGFVGLFRGKKIDDDLFDELEEQLLIADVGVETTRKIIERLTE 189 Query: 73 ---KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 ++ KD +L + + +L +P + P VIL+VGVNGVGKTT IG Sbjct: 190 HADRKQLKDADA--LLSLLKTEMSGILAKADEPLVIE-GKTPFVILMVGVNGVGKTTTIG 246 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+++ G VMLAAGDTFR+AA++QL++W R + V G+D+A++ ++A + A Sbjct: 247 KLARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNVPVVAQHTGADSASVIFDAIQAA 306 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q Sbjct: 307 KARGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDDDAPHEVMLTLDASTGQNAVSQA 366 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI+DL PF A DF Sbjct: 367 RLFDEAVGLTGIALTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIDDLRPFKADDF 423 >gi|260767577|ref|ZP_05876513.1| signal recognition particle receptor protein FtsY [Vibrio furnissii CIP 102972] gi|260617477|gb|EEX42660.1| signal recognition particle receptor protein FtsY [Vibrio furnissii CIP 102972] Length = 405 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 127/304 (41%), Positives = 196/304 (64%), Gaps = 1/304 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ Sbjct: 93 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLVADVGMDTT 152 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+ L K + + LY V + + ++L + +P D S P VIL+VGVNGV Sbjct: 153 LKIIASLTEKSSRQQLRDGEALYGVLKDEMAEILSTVEQPLVIDSSKTPFVILMVGVNGV 212 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ G KVMLAAGDTFR+AA++QL+IW +R + + G+D+A++ Sbjct: 213 GKTTTIGKLAKQFQAEGKKVMLAAGDTFRAAAVEQLQIWGERNNVPVIAQHTGADSASVI 272 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N + LM + K++RV+K++D APH ++ LDA TG Sbjct: 273 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 332 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI+DL PF Sbjct: 333 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEGIDDLRPFA 392 Query: 303 AKDF 306 ++F Sbjct: 393 TQEF 396 >gi|229844636|ref|ZP_04464775.1| cell division protein FtsY [Haemophilus influenzae 6P18H1] gi|229812350|gb|EEP48040.1| cell division protein FtsY [Haemophilus influenzae 6P18H1] Length = 400 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 126/295 (42%), Positives = 189/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G +++DD + EELE+ L+ +DIGV KI++ L Sbjct: 96 FFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 155 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K++ +LY ++ + +L P++KP D + +P+VIL+VGVNGVGKTT IGKL Sbjct: 156 HASRKELQDAELLYQQLKVEMANILEPVAKPLVIDNTKKPYVILMVGVNGVGKTTTIGKL 215 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R V GSD+A++ ++A + A A Sbjct: 216 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 275 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+LI DTAGRL N + LM + K+ RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 276 RNIDILIADTAGRLQNKNNLMDELKKIARVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 335 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I K+P+ ++GVGE I DL F AK+F Sbjct: 336 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 390 >gi|226946816|ref|YP_002801889.1| signal recognition particle-docking protein FtsY [Azotobacter vinelandii DJ] gi|226721743|gb|ACO80914.1| signal recognition particle-docking protein FtsY [Azotobacter vinelandii DJ] Length = 451 Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 128/296 (43%), Positives = 191/296 (64%), Gaps = 2/296 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L +G A T L EG+ + + + +DD + EELE L+ +D+GV I++ L Sbjct: 145 FFARLRQGLAKTGSTLGEGMASLFLGEKAIDDELLEELETRLLLADVGVEATTAIIQSLT 204 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + K+++ LY + E + +L P+ +P + RP+VILVVGVNGVGKTT IGK Sbjct: 205 QRVARKELADSEALYRALQEELAALLRPVEQPLVLESEQRPYVILVVGVNGVGKTTTIGK 264 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ ++ G KVMLAAGDTFR+AA++QL+IW +R + G+D+A++ ++A + A+ Sbjct: 265 LAARLQQEGRKVMLAAGDTFRAAAVEQLQIWGERNRIPVIAQHTGADSASVIFDALQAAK 324 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DVLI DTAGRLH LM + K+ RVL +LD APH VL VLDA TGQNA+ Q + Sbjct: 325 ARGMDVLIADTAGRLHTKDNLMEELKKVRRVLGKLDEAAPHEVLLVLDAGTGQNAINQTK 384 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ TGL +TK+DGTA+GG + + +P+ ++GVGEG++DL F A++F Sbjct: 385 QFNQAVEITGLALTKLDGTAKGGVIFALARQFGLPIRYIGVGEGVDDLRDFAAEEF 440 >gi|229520064|ref|ZP_04409492.1| signal recognition particle receptor protein FtsY [Vibrio cholerae TM 11079-80] gi|229342852|gb|EEO07842.1| signal recognition particle receptor protein FtsY [Vibrio cholerae TM 11079-80] Length = 395 Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 123/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 91 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 150 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + + LY + E + ++L + +P D +P+VIL+VGVNGVGKTT IGK Sbjct: 151 AKASRQQLRDGEALYGLLKEEMAEILSQVEQPLLIDTEKKPYVILMVGVNGVGKTTTIGK 210 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+ Sbjct: 211 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 270 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 271 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 330 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGE I+DL PF ++F Sbjct: 331 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGENIDDLRPFATQEF 386 >gi|212637491|ref|YP_002314016.1| cell division transporter substrate-binding protein FtsY [Shewanella piezotolerans WP3] gi|212558975|gb|ACJ31429.1| Cell division transporter substrate-binding protein FtsY [Shewanella piezotolerans WP3] Length = 528 Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 131/307 (42%), Positives = 194/307 (63%), Gaps = 2/307 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L +G TS + G I S +++DD + EELE+ L+ +D+GV ++++ L + Sbjct: 222 RLKRGLKRTSESIGSGFVGIFSGKKIDDDLFEELEEQLLIADVGVETTTRLIKNLTEQAS 281 Query: 76 AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K + LYD+ + + K L P+S P + + P VIL+VGVNGVGKTT IGKL+K+ Sbjct: 282 RKQLKDGEALYDLMRDEMQKTLDPVSVPLIPENADGPFVILMVGVNGVGKTTTIGKLAKQ 341 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G VMLAAGDTFR+AA++QL++W R + G+D+A++ ++A + A+A+K Sbjct: 342 YQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVIAQHTGADSASVLFDALQAAKARKA 401 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 DVLI DTAGRL N + LM + K++RV+K+ D APH V+ LDA+TGQNA+ Q ++F Sbjct: 402 DVLIADTAGRLQNKAHLMDELKKVVRVMKKQDESAPHEVMLTLDASTGQNAISQAQLFQE 461 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF-SAVITGC 313 G TG+ ++K+DGTA+GG + I IP+ +GVGE I+DL F AKDF A+ + Sbjct: 462 AVGVTGITISKLDGTAKGGVIFAIADKFGIPIRHIGVGEQIDDLRTFDAKDFIEALFSQS 521 Query: 314 LDYGEEK 320 D E K Sbjct: 522 KDDTETK 528 >gi|330812382|ref|YP_004356844.1| signal recognition particle receptor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380490|gb|AEA71840.1| putative signal recognition particle receptor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 477 Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 125/298 (41%), Positives = 189/298 (63%), Gaps = 2/298 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L +G + TS + EG+ + ++ +DD + E++E L+ +D+GV I++ Sbjct: 169 VGFFARLKQGLSKTSASIGEGMASLFLGKKVIDDELLEDIETRLLTADVGVEATSVIIQS 228 Query: 70 LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L K K ++ LY + + +L P+ KP ++P VILVVGVNG GKTT I Sbjct: 229 LTQKVARKQLTDADALYKSLQGELTSLLKPVEKPLVIASQNKPFVILVVGVNGAGKTTTI 288 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + Sbjct: 289 GKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVIFDAVQA 348 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q Sbjct: 349 AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQ 408 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A+ F Sbjct: 409 AKQFNQTVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 466 >gi|170718906|ref|YP_001784077.1| signal recognition particle-docking protein FtsY [Haemophilus somnus 2336] gi|168827035|gb|ACA32406.1| signal recognition particle-docking protein FtsY [Haemophilus somnus 2336] Length = 447 Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 123/295 (41%), Positives = 188/295 (63%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G + +++DD + EELE+ L+ +DIGV KI+ L+ Sbjct: 144 FFSRLVKGLLKTKQNIGIGFRSLFLGKKIDDELFEELEEQLLIADIGVPTTTKIINNLIQ 203 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + +LY ++ + +L P+ +P D S +P+VIL+VGVNGVGKTT IGKL Sbjct: 204 HASRKQLQEADLLYQQLKVELADILKPVEQPLQLDNSKKPYVILMVGVNGVGKTTTIGKL 263 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + G VMLAAGDTFR+AA++QL++W +R + GSD+A++ ++A + A A Sbjct: 264 ANQFQRQGKSVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQSTGSDSASVIFDAMQSAAA 323 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N + LM + K++RV+K+ D APH ++ LD+ TGQNA+ Q ++ Sbjct: 324 RNIDVLIADTAGRLQNKNNLMDELKKIVRVIKKCDETAPHEIMLTLDSGTGQNAISQAKL 383 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I +P+ ++GVGE I+DL PF A +F Sbjct: 384 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIDDLRPFQADEF 438 >gi|218681649|ref|ZP_03529450.1| cell division protein [Rhizobium etli CIAT 894] Length = 423 Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 114/203 (56%), Positives = 157/203 (77%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW ++L G A TS +L I + + R+LDD ++LEDLLI++D+GV A ++ + L Sbjct: 221 LSWFQRLRNGLARTSSQLTGQIAALFTKRKLDDETLQDLEDLLIQADLGVETALRVTDTL 280 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++RY KDV+ + V ++ I K+L P++KP D SH+PHVILVVGVNG GKTT IGK Sbjct: 281 ASERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGVNGTGKTTTIGK 340 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT+++F+ +++G+DAA LAY+AF+QA+ Sbjct: 341 LAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTNSEFIGTKLGADAAGLAYDAFEQAK 400 Query: 191 AKKVDVLIIDTAGRLHNNSILMA 213 A+K DVLI+DTAGRL N + LMA Sbjct: 401 ARKCDVLIVDTAGRLQNKAELMA 423 >gi|251791621|ref|YP_003006342.1| signal recognition particle-docking protein FtsY [Dickeya zeae Ech1591] gi|247540242|gb|ACT08863.1| signal recognition particle-docking protein FtsY [Dickeya zeae Ech1591] Length = 452 Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 124/299 (41%), Positives = 190/299 (63%), Gaps = 10/299 (3%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71 + +L + T L G + +++DD + +ELE+ L+ +D+GV +KI++ L Sbjct: 150 FFARLKRSLIKTRQNLGSGFVGLFRGKKIDDDLFDELEEQLLIADVGVETTRKIIDRLTE 209 Query: 72 --TKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 +++ KD L ++S+++ K+ PL+ P VIL+VGVNGVGKTT Sbjct: 210 HASRKQLKDAEALIALLKAEMSDILAKVDAPLAID-----GKTPFVILMVGVNGVGKTTT 264 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+++ G VMLAAGDTFR+AA++QL++W R + V G+D+A++ ++A + Sbjct: 265 IGKLARQYQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVPVVAQHTGADSASVIFDALQ 324 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+A+ VDVLI DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Sbjct: 325 AAKARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEEAPHEVMLTLDASTGQNAVS 384 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++F+ G G+ +TK+DGTA+GG + I IP+ ++GVGE I+DL PF A DF Sbjct: 385 QAKLFNEAVGLNGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGESIDDLRPFKADDF 443 >gi|269961511|ref|ZP_06175874.1| signal recognition particle-docking protein FtsY [Vibrio harveyi 1DA3] gi|269833740|gb|EEZ87836.1| signal recognition particle-docking protein FtsY [Vibrio harveyi 1DA3] Length = 416 Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 126/304 (41%), Positives = 197/304 (64%), Gaps = 1/304 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + S +++D+ + EELE+ L+ +D+G+ Sbjct: 104 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDEDLFEELEEQLLIADVGMNTT 163 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+ L K D+ LY + E + ++L + +P D + P+VIL+VGVNGV Sbjct: 164 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDTNKTPYVILMVGVNGV 223 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 224 GKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 283 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N + LM + K++RV+K++D APH ++ LDA TG Sbjct: 284 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 343 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL PF Sbjct: 344 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFE 403 Query: 303 AKDF 306 ++F Sbjct: 404 TQEF 407 >gi|114321806|ref|YP_743489.1| signal recognition particle-docking protein FtsY [Alkalilimnicola ehrlichii MLHE-1] gi|114228200|gb|ABI57999.1| signal recognition particle-docking protein FtsY [Alkalilimnicola ehrlichii MLHE-1] Length = 389 Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 131/305 (42%), Positives = 187/305 (61%), Gaps = 2/305 (0%) Query: 16 KLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73 +L G + T L EGI + + S+ +DD + EELE L+ +D+GV Q+I++ L + Sbjct: 82 RLRAGLSRTRSGLTEGIASLFLGSKTIDDDLLEELETQLLLADVGVEATQRIIDGLTARL 141 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 R A+ + + E + +L P P +P VIL+VG+NG GKTT IGKL++ Sbjct: 142 RRAELKDTDALFQALKEDMTAILSPCEAPLELPNEPKPFVILMVGINGAGKTTTIGKLAR 201 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 + D G +VMLAAGDTFR+AA++QL+ W +R + + G+DAA++ ++ ++ A+A+ Sbjct: 202 RFGDQGKRVMLAAGDTFRAAAVEQLQAWGERNNTPVIAQHTGADAASVVFDGWQAAKARG 261 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 DVLI DTAGRLH S LM + K+ RVL + DP APH L VLDA GQNAL Q FH Sbjct: 262 SDVLIADTAGRLHTQSNLMEELRKIKRVLGKQDPTAPHETLLVLDAGNGQNALAQAREFH 321 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 G G+++TK+DGTARGG + I ++P+ F+GVGE DL PFVA DF + Sbjct: 322 QAIGLDGVVITKLDGTARGGVIFAIAEQLRLPIRFIGVGESAEDLRPFVAADFVEALLQR 381 Query: 314 LDYGE 318 D G+ Sbjct: 382 DDQGQ 386 >gi|170724571|ref|YP_001758597.1| signal recognition particle-docking protein FtsY [Shewanella woodyi ATCC 51908] gi|169809918|gb|ACA84502.1| signal recognition particle-docking protein FtsY [Shewanella woodyi ATCC 51908] Length = 491 Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 128/295 (43%), Positives = 187/295 (63%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L +G TS + G + +++DD + EELE+ L+ +D+GV +++ L Sbjct: 184 FFARLKRGLKRTSENIGSGFIGLFKGKKIDDDLFEELEEQLLIADVGVETTTRLISSLTE 243 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K + LY++ E + K L P S P + + P VIL+VGVNGVGKTT IGKL Sbjct: 244 QASRKQLKDGEALYELLREEMQKTLEPASIPLVPENADGPFVILMVGVNGVGKTTTIGKL 303 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +K+ G VMLAAGDTFR+AA++QL++W R V G+D+A++ ++A + A+A Sbjct: 304 AKQYQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVVAQHTGADSASVLFDALQAARA 363 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+ D +APH V+ LDA+TGQNA+ Q E+ Sbjct: 364 RNVDVLIADTAGRLQNKSHLMDELKKVVRVMKKQDENAPHEVMLTLDASTGQNAISQAEL 423 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G TG+ ++K+DGTA+GG + I IP+ +GVGE I+DL F AKDF Sbjct: 424 FKQAVGVTGITISKLDGTAKGGVIFAIADKFGIPIRHIGVGEQIDDLRTFDAKDF 478 >gi|293391631|ref|ZP_06635965.1| cell division protein FtsY [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952165|gb|EFE02284.1| cell division protein FtsY [Aggregatibacter actinomycetemcomitans D7S-1] Length = 390 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G +++DD + EELE+ L+ +DIGV KI+ L Sbjct: 86 FFSRLLKGLVKTKQNIGAGFRSFFLGKKIDDDLFEELEEQLLIADIGVPTTSKIINNLTQ 145 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + + LY +L + ++L P+++P D S +P+VIL+VGVNGVGKTT IGKL Sbjct: 146 HATRQQLQNADSLYQQLKLEMGEILKPVAQPLCIDGSKKPYVILMVGVNGVGKTTTIGKL 205 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R V GSD+A++ ++A + A A Sbjct: 206 ARKFQMEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 265 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+LI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 266 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDAGTGQNAISQAKL 325 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + I +P+ ++GVGE I DL F A++F Sbjct: 326 FHEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLREFNAEEF 380 >gi|229515823|ref|ZP_04405281.1| signal recognition particle receptor protein FtsY [Vibrio cholerae TMA 21] gi|229347086|gb|EEO12047.1| signal recognition particle receptor protein FtsY [Vibrio cholerae TMA 21] Length = 391 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 123/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 87 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 146 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + + LY + E + ++L + +P D +P+VIL+VGVNGVGKTT IGK Sbjct: 147 AKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 206 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+ Sbjct: 207 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 266 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 267 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 326 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGE I+DL PF ++F Sbjct: 327 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 382 >gi|148827958|ref|YP_001292711.1| cell division protein FtsY [Haemophilus influenzae PittGG] gi|148719200|gb|ABR00328.1| cell division protein FtsY [Haemophilus influenzae PittGG] Length = 400 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G +++DD + EELE+ L+ +DIGV KI++ L Sbjct: 96 FFSRLVKGLLKTKQNIGAGFRGFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 155 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K++ +LY ++ + +L P+++P D + +P+VIL+VGVNGVGKTT IGKL Sbjct: 156 HASRKELQDAELLYQQLKVEMADILEPVARPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 215 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G V+LAAGDTFR+AA++QL++W +R V GSD+A++ ++A + A A Sbjct: 216 ARKFQAEGKSVLLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 275 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+LI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 276 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 335 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I K+P+ ++GVGE I DL F AK+F Sbjct: 336 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 390 >gi|153803614|ref|ZP_01958200.1| signal recognition particle-docking protein FtsY [Vibrio cholerae MZO-3] gi|124120853|gb|EAY39596.1| signal recognition particle-docking protein FtsY [Vibrio cholerae MZO-3] Length = 391 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 123/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 87 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 146 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + + LY + E + ++L + +P D +P+VIL+VGVNGVGKTT IGK Sbjct: 147 AKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 206 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+ Sbjct: 207 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 266 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 267 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 326 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGE I+DL PF ++F Sbjct: 327 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 382 >gi|149191502|ref|ZP_01869751.1| cell division protein FtsY [Vibrio shilonii AK1] gi|148834690|gb|EDL51678.1| cell division protein FtsY [Vibrio shilonii AK1] Length = 414 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 126/304 (41%), Positives = 194/304 (63%), Gaps = 1/304 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + + +DD + EELE+ L+ +D+G+ Sbjct: 102 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKEIDDELFEELEEQLLIADVGMNTT 161 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI++ L K D+ LY + E + ++L + KP D + P VIL+VGVNGV Sbjct: 162 VKIIDSLTEKASRADLKDGEALYGLLKEEMAEILSHVEKPLEVDSTKMPFVILMVGVNGV 221 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 222 GKTTTIGKLAKQYQAQGKKVMLAAGDTFRAAAVEQLQVWGERNDVPVIAQHTGADSASVI 281 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N + LM + K++RV+K++D APH ++ LDA TG Sbjct: 282 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDESAPHEIMLTLDAGTG 341 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + + +IP+ ++GVGE I+DL PF Sbjct: 342 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFALADQFQIPIRYIGVGESIDDLRPFE 401 Query: 303 AKDF 306 +DF Sbjct: 402 TQDF 405 >gi|153830010|ref|ZP_01982677.1| signal recognition particle-docking protein FtsY [Vibrio cholerae 623-39] gi|148874495|gb|EDL72630.1| signal recognition particle-docking protein FtsY [Vibrio cholerae 623-39] Length = 385 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 123/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 81 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 140 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + + LY + E + ++L + +P D +P+VIL+VGVNGVGKTT IGK Sbjct: 141 AKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 200 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+ Sbjct: 201 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 260 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 261 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 320 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGE I+DL PF ++F Sbjct: 321 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 376 >gi|327483045|gb|AEA77452.1| Signal recognition particle receptor protein FtsY [Vibrio cholerae LMA3894-4] Length = 390 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 123/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 86 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 145 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + + LY + E + ++L + +P D +P+VIL+VGVNGVGKTT IGK Sbjct: 146 AKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 205 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+ Sbjct: 206 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 265 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 266 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 325 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGE I+DL PF ++F Sbjct: 326 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 381 >gi|297581816|ref|ZP_06943737.1| signal recognition particle-docking protein FtsY [Vibrio cholerae RC385] gi|297533910|gb|EFH72750.1| signal recognition particle-docking protein FtsY [Vibrio cholerae RC385] Length = 397 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 123/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 93 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 152 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + + LY + E + ++L + +P D +P+VIL+VGVNGVGKTT IGK Sbjct: 153 AKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 212 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+ Sbjct: 213 LAKQFQAQGEKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 272 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 273 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 332 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGE I+DL PF ++F Sbjct: 333 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 388 >gi|157373360|ref|YP_001471960.1| signal recognition particle-docking protein FtsY [Shewanella sediminis HAW-EB3] gi|157315734|gb|ABV34832.1| signal recognition particle-docking protein FtsY [Shewanella sediminis HAW-EB3] Length = 540 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 126/295 (42%), Positives = 189/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L +G TS + G + S +++DD + EELE+ L+ +D+GV ++++ L Sbjct: 232 FFARLKRGLKRTSENIGSGFVSLFSGKKIDDDLFEELEEQLLIADVGVETTTRLIDSLTE 291 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K + LY++ + + K L P+S P + + P VIL+VGVNGVGKTT IGKL Sbjct: 292 QASRKQLKDGEALYEILRDEMQKTLEPVSIPLVPESADGPFVILMVGVNGVGKTTTIGKL 351 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +K+ G VMLAAGDTFR+AA++QL++W R V G+D+A++ ++A + A+A Sbjct: 352 AKQYQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVVAQHTGADSASVLFDALQAARA 411 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+LI DTAGRL N + LM + K+IRV+K+ D APH V+ LDA+TGQNA+ Q E+ Sbjct: 412 RNIDILIADTAGRLQNKAHLMDELKKVIRVMKKQDESAPHEVMLTLDASTGQNAISQAEL 471 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G TG+ ++K+DGTA+GG + I IP+ +GVGE I+DL F AKDF Sbjct: 472 FKKAVGVTGITISKLDGTAKGGVIFAIADKFGIPIRHIGVGEQIDDLRTFDAKDF 526 >gi|291614826|ref|YP_003524983.1| signal recognition particle-docking protein FtsY [Sideroxydans lithotrophicus ES-1] gi|291584938|gb|ADE12596.1| signal recognition particle-docking protein FtsY [Sideroxydans lithotrophicus ES-1] Length = 315 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 140/319 (43%), Positives = 201/319 (63%), Gaps = 18/319 (5%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 + N ++ES SW+ +LT A T +L + ++ ++DD + EELE +LI +D+G+ Sbjct: 5 LKNTPASAESKSWLSRLTGSLARTGGQLS---SLLVPGGKIDDELYEELETILITADVGM 61 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHV 113 + ++ ++ +R+ K+ QR L + +L + K+L PL+KP + S RP V Sbjct: 62 DATRSLLADV--RRHVKE---QR-LTEAGQLKEALAHALLKLLQPLAKPLDVGAS-RPFV 114 Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 I++ GVNG GKTT IGKL+K + G V+LAAGDTFR+AA +QL W R + + Sbjct: 115 IMLCGVNGAGKTTSIGKLAKHFQNQGKSVLLAAGDTFRAAAREQLMEWGRRNDVTVIAQQ 174 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 G DAAA+ Y+A + AQA+ +DV++ DTAGRL + LM I K+ RV+ + P APH V Sbjct: 175 SG-DAAAVIYDAVQAAQARGIDVVLADTAGRLTTQAHLMEEIKKVKRVIAKALPGAPHEV 233 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L VLDA TGQNAL QV+ F TGL++TK+DGTA+GG + I H IPV F+GVGE Sbjct: 234 LLVLDANTGQNALSQVKSFDDALQVTGLVLTKLDGTAKGGVIAAIAKAHPIPVRFIGVGE 293 Query: 294 GINDLEPFVAKDFSAVITG 312 ++DL PFVA+DF A + G Sbjct: 294 ALDDLRPFVAEDFVAALLG 312 >gi|190571642|ref|YP_001976000.1| signal recognition particle protein FtsY [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019044|ref|ZP_03334851.1| signal recognition particle protein FtsY [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357914|emb|CAQ55375.1| signal recognition particle protein FtsY [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995153|gb|EEB55794.1| signal recognition particle protein FtsY [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 303 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 130/304 (42%), Positives = 192/304 (63%), Gaps = 3/304 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +S L +G TS + G+ +I S ++LD + ++LE+LLI DIG ++ ++++ Sbjct: 1 MSLFSNLYQGLLKTSSRFSGGVKNIFSGKKKLDQSLLDDLEELLISMDIGHKTSRLLIDK 60 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L + ++ +V + + I +L P+ +P + +PH+I+V GVNG GKTT IG Sbjct: 61 LASIKFESEVEHSVITQQLMSEIESILNPVVQPL--ILNKKPHIIMVCGVNGNGKTTTIG 118 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ K + G VML A DTFR+AA +QL IWA+R+ V E GSD+A++AY A QA Sbjct: 119 KLAYKYKEKGKSVMLVACDTFRAAASEQLNIWAERSDCSIVTGEHGSDSASVAYRAVNQA 178 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 VDV++IDTAGRL NN LM + K+ R +K+LD APH V+ VLDATTGQNA Q+ Sbjct: 179 IKDSVDVVLIDTAGRLQNNVNLMQELSKIHRTIKKLDDTAPHDVILVLDATTGQNAYSQL 238 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F + G TGLI+TK+DGTA+GG +I + +K+ ++ +G+GE I DL F K+F+ Sbjct: 239 EAFSKMVGVTGLIVTKLDGTAKGGVVIGLAEAYKVKLHAIGIGESIEDLREFTGKEFAEA 298 Query: 310 ITGC 313 + C Sbjct: 299 LFKC 302 >gi|254291953|ref|ZP_04962734.1| signal recognition particle-docking protein FtsY [Vibrio cholerae AM-19226] gi|150422163|gb|EDN14129.1| signal recognition particle-docking protein FtsY [Vibrio cholerae AM-19226] Length = 389 Score = 239 bits (610), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 123/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 85 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 144 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + + LY + E + ++L + +P D +P+VIL+VGVNGVGKTT IGK Sbjct: 145 AKASRQQLRDGEALYGLLKEEMAEILSQVEQPLLIDTEKKPYVILMVGVNGVGKTTTIGK 204 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+ Sbjct: 205 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 264 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 265 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 324 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGE I+DL PF ++F Sbjct: 325 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 380 >gi|325577122|ref|ZP_08147606.1| cell division protein FtsY [Haemophilus parainfluenzae ATCC 33392] gi|325160704|gb|EGC72825.1| cell division protein FtsY [Haemophilus parainfluenzae ATCC 33392] Length = 485 Score = 239 bits (610), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 123/295 (41%), Positives = 191/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G +++DD + EELE+ L+ +DIGV KI++ L Sbjct: 180 FFSRLVKGLLKTKQNIGAGFRAFFLGKKIDDDLFEELEEQLLIADIGVPTTNKIIKNLTE 239 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + +LY ++ + ++L P++KP D + +P+VIL+VGVNGVGKTT IGKL Sbjct: 240 HASRKQLQDAELLYQQLKVEMVEILKPVAKPLVIDTTKKPYVILMVGVNGVGKTTTIGKL 299 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K + G VMLAAGDTFR+AA++QL++W +R + V GSD+A++ ++A + A A Sbjct: 300 ARKFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAA 359 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+LI DTAGRL N + LM + K++RV+++ D APH ++ LDA TGQNA+ Q ++ Sbjct: 360 RNIDILIADTAGRLQNKNNLMDELKKIVRVMRKYDETAPHEIMLTLDAGTGQNAISQAKL 419 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I +P+ ++GVGE I DL F A++F Sbjct: 420 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLREFNAEEF 474 >gi|251793357|ref|YP_003008085.1| cell division protein FtsY [Aggregatibacter aphrophilus NJ8700] gi|247534752|gb|ACS97998.1| cell division protein FtsY [Aggregatibacter aphrophilus NJ8700] Length = 495 Score = 239 bits (610), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 188/295 (63%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G +++DD + EELE+ L+ +DIGV KI+ L Sbjct: 191 FFSRLLKGLVKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTTKIINNLTQ 250 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + + LY +L + ++L P+++P D S +P+VIL+VGVNGVGKTT IGK+ Sbjct: 251 HATRQQLQNADTLYQQLKLEMGQILKPVAQPLRIDGSKKPYVILMVGVNGVGKTTTIGKV 310 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R V IGSD+A++ ++A + A A Sbjct: 311 ARKFQMEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSIGSDSASVIFDAMQSAAA 370 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 371 RNIDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDAGTGQNAISQAKL 430 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I +P+ ++GVGE I DL F A++F Sbjct: 431 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLREFNAEEF 485 >gi|237728779|ref|ZP_04559260.1| cell division protein FtsY [Citrobacter sp. 30_2] gi|226909401|gb|EEH95319.1| cell division protein FtsY [Citrobacter sp. 30_2] Length = 508 Score = 239 bits (610), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 126/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 206 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 265 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N D P VIL+VGVNGVGKTT IGKL Sbjct: 266 GASRKQLKDAEALYGLLKEEMGEILAKVDEPLNVD-GKTPFVILMVGVNGVGKTTTIGKL 324 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 325 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 384 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 385 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEVMLTIDASTGQNAISQAKL 444 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 445 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 499 >gi|113460560|ref|YP_718624.1| signal recognition particle-docking protein FtsY [Haemophilus somnus 129PT] gi|112822603|gb|ABI24692.1| signal recognition particle-docking protein FtsY [Haemophilus somnus 129PT] Length = 447 Score = 239 bits (610), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 123/295 (41%), Positives = 188/295 (63%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G + +++DD + EELE+ L+ +DIGV KI+ L+ Sbjct: 144 FFSRLVKGLLKTKQNIGIGFRSLFLGKKIDDELFEELEEQLLIADIGVPTTTKIINNLIQ 203 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + +LY ++ + +L P+ +P D S +P+VIL+VGVNGVGKTT IGKL Sbjct: 204 HASRKQLQEADLLYQQLKVELADILKPVEQPLQLDNSKKPYVILMVGVNGVGKTTTIGKL 263 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + G VMLAAGDTFR+AA++QL++W +R + GSD+A++ ++A + A A Sbjct: 264 ANQFQRQGKSVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQSTGSDSASVIFDAMQSAVA 323 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N + LM + K++RV+K+ D APH ++ LD+ TGQNA+ Q ++ Sbjct: 324 RNIDVLIADTAGRLQNKNNLMDELKKIVRVIKKCDETAPHEIMLTLDSGTGQNAISQAKL 383 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I +P+ ++GVGE I+DL PF A +F Sbjct: 384 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIDDLRPFQADEF 438 >gi|261210150|ref|ZP_05924447.1| signal recognition particle receptor protein FtsY [Vibrio sp. RC341] gi|260840690|gb|EEX67239.1| signal recognition particle receptor protein FtsY [Vibrio sp. RC341] Length = 388 Score = 239 bits (609), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 123/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 84 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDELFEELEEQLLIADVGMDTTTKIITNLT 143 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + + LY + E + ++L + +P D +P+VIL+VGVNGVGKTT IGK Sbjct: 144 AKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 203 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+ Sbjct: 204 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 263 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 264 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 323 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGE I+DL PF ++F Sbjct: 324 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 379 >gi|153874953|ref|ZP_02002963.1| signal recognition particle-docking protein FtsY [Beggiatoa sp. PS] gi|152068583|gb|EDN67037.1| signal recognition particle-docking protein FtsY [Beggiatoa sp. PS] Length = 328 Score = 239 bits (609), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 130/302 (43%), Positives = 194/302 (64%), Gaps = 3/302 (0%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKI 66 S+ W+ +L +G + T L ++D++ +R +DD + EE+E LL+ +D+GV Q + Sbjct: 20 SKKSGWLDRLKQGLSRTREVLTTDLSDLLQVKRAIDDELLEEIETLLLTADVGVEATQAL 79 Query: 67 VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNW-DFSHRPHVILVVGVNGVGK 124 + +L + K ++ L+D + E + +L P+ +P D S++P VIL+VGVNG GK Sbjct: 80 MTDLTQRVNKKQLNDSEALFDALREKMQAILQPVEQPLILPDKSNKPFVILMVGVNGAGK 139 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+K+ G VMLAAGDTFR+AA++QLK+W +R + +D+A++ ++ Sbjct: 140 TTTIGKLAKRFQAQGHSVMLAAGDTFRAAAVEQLKVWGERNEVPVIAQHDRADSASVIFD 199 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + A A+ +DVLI DTAGRLH S LM + K+ RV+K+LD APH L V+DA GQN Sbjct: 200 ALQAATARGIDVLIADTAGRLHTQSNLMEELKKVQRVMKKLDDTAPHESLLVIDAGIGQN 259 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ Q E FH G TGL +TK+DGTA+GG + + +P+ F+GVGE I+DL PF A Sbjct: 260 AIVQAEQFHQAIGLTGLTLTKLDGTAKGGIMFAVAKRIGLPIRFIGVGEKIDDLRPFEAA 319 Query: 305 DF 306 +F Sbjct: 320 NF 321 >gi|254230125|ref|ZP_04923521.1| signal recognition particle-docking protein FtsY, putative [Vibrio sp. Ex25] gi|262392912|ref|YP_003284766.1| signal recognition particle receptor protein FtsY [Vibrio sp. Ex25] gi|151937370|gb|EDN56232.1| signal recognition particle-docking protein FtsY, putative [Vibrio sp. Ex25] gi|262336506|gb|ACY50301.1| signal recognition particle receptor protein FtsY [Vibrio sp. Ex25] Length = 407 Score = 239 bits (609), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 126/304 (41%), Positives = 196/304 (64%), Gaps = 1/304 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + S +++D+ + EELE+ L+ +D+G+ Sbjct: 95 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDEDLFEELEEQLLIADVGMNTT 154 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+ L K D+ LY + E + ++L + +P D + P+VIL+VGVNGV Sbjct: 155 TKIINNLTEKATRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSNKTPYVILMVGVNGV 214 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 215 GKTTTIGKLAKQFQTQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 274 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N + LM + K++RV+K++D APH ++ LDA TG Sbjct: 275 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 334 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF Sbjct: 335 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFE 394 Query: 303 AKDF 306 ++F Sbjct: 395 TQEF 398 >gi|259910113|ref|YP_002650469.1| Cell division protein [Erwinia pyrifoliae Ep1/96] gi|224965735|emb|CAX57267.1| Cell division protein [Erwinia pyrifoliae Ep1/96] gi|283480210|emb|CAY76126.1| Cell division protein ftsY homolog [Erwinia pyrifoliae DSM 12163] Length = 488 Score = 239 bits (609), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 128/300 (42%), Positives = 191/300 (63%), Gaps = 12/300 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV ++I+ L Sbjct: 186 FFARLKRSLVKTRTNLGSGFISLFRGKKIDDELFEELEEQLLIADVGVETTRRIIGNLTN 245 Query: 73 KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126 + K + LY D++E++ K+ PL D S + P VIL+VGVNGVGKTT Sbjct: 246 QASRKQLRDAEALYGLLKTDMAEILAKVEAPL------DISGKTPFVILMVGVNGVGKTT 299 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+++ G VMLAAGDTFR+AA++QL++W R + V G+D+A++ ++A Sbjct: 300 TIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASVIFDAI 359 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+A+ VDVLI DTAGRL N + LM + K+ RV+K+LD APH V+ +DA+TGQNA+ Sbjct: 360 QAAKARHVDVLIADTAGRLQNKAHLMEELKKITRVMKKLDDSAPHEVMLTIDASTGQNAI 419 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++FH G TG+ +TK+DGTA+GG + + IP+ ++GVGEGI+DL PF A DF Sbjct: 420 SQTKLFHEAVGLTGITLTKLDGTAKGGVIFSVADLFTIPIRYIGVGEGIDDLRPFKADDF 479 >gi|310765701|gb|ADP10651.1| Cell division protein [Erwinia sp. Ejp617] Length = 492 Score = 238 bits (608), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 128/300 (42%), Positives = 191/300 (63%), Gaps = 12/300 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV ++I+ L Sbjct: 190 FFARLKRSLVKTRTNLGSGFISLFRGKKIDDELFEELEEQLLIADVGVETTRRIIGNLTN 249 Query: 73 KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126 + K + LY D++E++ K+ PL D S + P VIL+VGVNGVGKTT Sbjct: 250 QASRKQLRDAEALYGLLKTDMAEILAKVESPL------DISGKMPFVILMVGVNGVGKTT 303 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+++ G VMLAAGDTFR+AA++QL++W R + V G+D+A++ ++A Sbjct: 304 TIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASVIFDAI 363 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+A+ VDVLI DTAGRL N + LM + K+ RV+K+LD APH V+ +DA+TGQNA+ Sbjct: 364 QAAKARHVDVLIADTAGRLQNKAHLMEELKKITRVMKKLDDSAPHEVMLTIDASTGQNAI 423 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++FH G TG+ +TK+DGTA+GG + + IP+ ++GVGEGI+DL PF A DF Sbjct: 424 SQTKLFHEAVGLTGITLTKLDGTAKGGVIFSVADLFTIPIRYIGVGEGIDDLRPFKADDF 483 >gi|152998323|ref|YP_001343158.1| signal recognition particle-docking protein FtsY [Marinomonas sp. MWYL1] gi|150839247|gb|ABR73223.1| signal recognition particle-docking protein FtsY [Marinomonas sp. MWYL1] Length = 413 Score = 238 bits (608), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 131/306 (42%), Positives = 200/306 (65%), Gaps = 16/306 (5%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 +LSW ++ G + T L G++ +I +++DD + EELE L+ +D+G+ Q ++ Sbjct: 107 ALSWSQRFKLGLSRTRSGLGNGLSSVIGGHKKVDDNLLEELETQLLMADVGIDATQTLIS 166 Query: 69 EL---LTKRYAKDVS--VQRVLYDVSELI---HKMLMPLSKPFNWDFSHRPHVILVVGVN 120 L L ++ KD + + + D++ ++ +ML P+SK P VIL+VGVN Sbjct: 167 ALTDKLNRKELKDSATLLSHLKADMNGILSQSQQMLEPVSK-------DGPFVILMVGVN 219 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT IGKL+KK G VMLAAGDTFR+AA++QL++W +R + V G+D+A+ Sbjct: 220 GVGKTTTIGKLAKKYQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSAS 279 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + Y+A + A+AK VD++I DTAGRL N + LM + K++RV+K+LD +APH V+ VLDA Sbjct: 280 VIYDAIESAKAKGVDIVIADTAGRLQNKANLMNELSKVVRVMKKLDENAPHEVMLVLDAG 339 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNA+ Q ++F G +G+ +TK+DGTA+GG + I IP+ ++GVGE +DL P Sbjct: 340 TGQNAISQAKLFSEAVGVSGITLTKLDGTAKGGIIFAIAKQFGIPIRYIGVGEQADDLRP 399 Query: 301 FVAKDF 306 FVA++F Sbjct: 400 FVAQEF 405 >gi|315635037|ref|ZP_07890318.1| cell division protein FtsY [Aggregatibacter segnis ATCC 33393] gi|315476299|gb|EFU67050.1| cell division protein FtsY [Aggregatibacter segnis ATCC 33393] Length = 518 Score = 238 bits (608), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G +++DD + EELE+ L+ +DIGV KI+ L Sbjct: 214 FFSRLLKGLVKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTTKIINNLTQ 273 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + + LY +L + ++L P+++P D S +P+VIL+VGVNGVGKTT IGKL Sbjct: 274 HATRQQLQNADTLYQQLKLEMGEILKPVAQPLRIDGSKKPYVILMVGVNGVGKTTTIGKL 333 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R V GSD+A++ ++A + A A Sbjct: 334 ARKFQMEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 393 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 394 RNIDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDAGTGQNAISQAKL 453 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I +P+ ++GVGE I DL F A++F Sbjct: 454 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLREFNAEEF 508 >gi|229508897|ref|ZP_04398387.1| signal recognition particle receptor protein FtsY [Vibrio cholerae B33] gi|229606695|ref|YP_002877343.1| signal recognition particle receptor protein FtsY [Vibrio cholerae MJ-1236] gi|227011852|gb|ACP08062.1| cell division protein FtsY [Vibrio cholerae O395] gi|229354014|gb|EEO18947.1| signal recognition particle receptor protein FtsY [Vibrio cholerae B33] gi|229369350|gb|ACQ59773.1| signal recognition particle receptor protein FtsY [Vibrio cholerae MJ-1236] Length = 389 Score = 238 bits (608), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 122/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 85 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 144 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + + + LY + E + ++L + +P D +P+VIL+VGVNGVGKTT IGK Sbjct: 145 ARASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 204 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+ Sbjct: 205 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 264 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 265 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 324 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGE I+DL PF ++F Sbjct: 325 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 380 >gi|121587716|ref|ZP_01677477.1| signal recognition particle-docking protein FtsY [Vibrio cholerae 2740-80] gi|121548015|gb|EAX58093.1| signal recognition particle-docking protein FtsY [Vibrio cholerae 2740-80] Length = 395 Score = 238 bits (608), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 122/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 91 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 150 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + + + LY + E + ++L + +P D +P+VIL+VGVNGVGKTT IGK Sbjct: 151 ARASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 210 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+ Sbjct: 211 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 270 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 271 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 330 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGE I+DL PF ++F Sbjct: 331 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 386 >gi|15640178|ref|NP_229805.1| cell division protein FtsY [Vibrio cholerae O1 biovar El Tor str. N16961] gi|229517011|ref|ZP_04406457.1| signal recognition particle receptor protein FtsY [Vibrio cholerae RC9] gi|255743904|ref|ZP_05417859.1| signal recognition particle receptor protein FtsY [Vibrio cholera CIRS 101] gi|9654548|gb|AAF93324.1| cell division protein FtsY [Vibrio cholerae O1 biovar El Tor str. N16961] gi|229346074|gb|EEO11046.1| signal recognition particle receptor protein FtsY [Vibrio cholerae RC9] gi|255738387|gb|EET93777.1| signal recognition particle receptor protein FtsY [Vibrio cholera CIRS 101] Length = 391 Score = 238 bits (608), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 122/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 87 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 146 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + + + LY + E + ++L + +P D +P+VIL+VGVNGVGKTT IGK Sbjct: 147 ARASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 206 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+ Sbjct: 207 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 266 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 267 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 326 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGE I+DL PF ++F Sbjct: 327 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 382 >gi|227080382|ref|YP_002808933.1| cell division protein FtsY [Vibrio cholerae M66-2] gi|254851533|ref|ZP_05240883.1| cell division protein FtsY [Vibrio cholerae MO10] gi|262151142|ref|ZP_06028281.1| signal recognition particle receptor protein FtsY [Vibrio cholerae INDRE 91/1] gi|262167011|ref|ZP_06034728.1| signal recognition particle receptor protein FtsY [Vibrio cholerae RC27] gi|298501091|ref|ZP_07010891.1| signal recognition particle-docking protein FtsY [Vibrio cholerae MAK 757] gi|227008270|gb|ACP04482.1| cell division protein FtsY [Vibrio cholerae M66-2] gi|254847238|gb|EET25652.1| cell division protein FtsY [Vibrio cholerae MO10] gi|262024529|gb|EEY43213.1| signal recognition particle receptor protein FtsY [Vibrio cholerae RC27] gi|262031036|gb|EEY49661.1| signal recognition particle receptor protein FtsY [Vibrio cholerae INDRE 91/1] gi|297540125|gb|EFH76186.1| signal recognition particle-docking protein FtsY [Vibrio cholerae MAK 757] Length = 393 Score = 238 bits (608), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 122/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 89 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 148 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + + + LY + E + ++L + +P D +P+VIL+VGVNGVGKTT IGK Sbjct: 149 ARASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 208 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+ Sbjct: 209 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 268 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 269 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 328 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGE I+DL PF ++F Sbjct: 329 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 384 >gi|147673157|ref|YP_001218274.1| signal recognition particle-docking protein FtsY [Vibrio cholerae O395] gi|229508422|ref|ZP_04397926.1| signal recognition particle receptor protein FtsY [Vibrio cholerae BX 330286] gi|146315040|gb|ABQ19579.1| signal recognition particle-docking protein FtsY [Vibrio cholerae O395] gi|229354695|gb|EEO19617.1| signal recognition particle receptor protein FtsY [Vibrio cholerae BX 330286] Length = 387 Score = 238 bits (608), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 122/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 83 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 142 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + + + LY + E + ++L + +P D +P+VIL+VGVNGVGKTT IGK Sbjct: 143 ARASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 202 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+ Sbjct: 203 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 262 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 263 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 322 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGE I+DL PF ++F Sbjct: 323 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 378 >gi|121728299|ref|ZP_01681330.1| signal recognition particle-docking protein FtsY [Vibrio cholerae V52] gi|121629429|gb|EAX61858.1| signal recognition particle-docking protein FtsY [Vibrio cholerae V52] Length = 397 Score = 238 bits (608), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 122/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 93 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 152 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + + + LY + E + ++L + +P D +P+VIL+VGVNGVGKTT IGK Sbjct: 153 ARASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 212 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+ Sbjct: 213 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 272 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 273 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 332 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGE I+DL PF ++F Sbjct: 333 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 388 >gi|269968645|ref|ZP_06182642.1| signal recognition particle-docking protein FtsY [Vibrio alginolyticus 40B] gi|269826732|gb|EEZ81069.1| signal recognition particle-docking protein FtsY [Vibrio alginolyticus 40B] Length = 408 Score = 238 bits (608), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 126/304 (41%), Positives = 196/304 (64%), Gaps = 1/304 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + S +++D+ + EELE+ L+ +D+G+ Sbjct: 96 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDEDLFEELEEQLLIADVGMNTT 155 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+ L K D+ LY + E + ++L + +P D + P+VIL+VGVNGV Sbjct: 156 TKIINNLTEKATRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSNKTPYVILMVGVNGV 215 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 216 GKTTTIGKLAKQFQTQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 275 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N + LM + K++RV+K++D APH ++ LDA TG Sbjct: 276 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 335 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF Sbjct: 336 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFE 395 Query: 303 AKDF 306 ++F Sbjct: 396 TQEF 399 >gi|238755241|ref|ZP_04616586.1| Cell division protein ftsY [Yersinia ruckeri ATCC 29473] gi|238706582|gb|EEP98954.1| Cell division protein ftsY [Yersinia ruckeri ATCC 29473] Length = 528 Score = 238 bits (608), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 126/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 226 FFARLKRSLLKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIIASLTE 285 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + KP + +P+VIL+VGVNGVGKTT IGKL Sbjct: 286 HASRKQLKDAEALYGKLKEEMSEILAKVDKPLDVS-GKKPYVILMVGVNGVGKTTTIGKL 344 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + A+A Sbjct: 345 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 404 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 405 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 464 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF A DF Sbjct: 465 FNETVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFKADDF 519 >gi|258622824|ref|ZP_05717841.1| signal recognition particle-docking protein FtsY [Vibrio mimicus VM573] gi|258584885|gb|EEW09617.1| signal recognition particle-docking protein FtsY [Vibrio mimicus VM573] Length = 398 Score = 238 bits (608), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 122/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 94 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDELFEELEEQLLIADVGMDTTTKIITNLT 153 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + + LY + E + ++L + +P + +P+VIL+VGVNGVGKTT IGK Sbjct: 154 AKASRQQLRDGEALYGLLKEEMAEILAQVEQPLVIEADKKPYVILMVGVNGVGKTTTIGK 213 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+ Sbjct: 214 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 273 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 274 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 333 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGE I+DL PF ++F Sbjct: 334 LFSEVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 389 >gi|285018841|ref|YP_003376552.1| cell division protein [Xanthomonas albilineans GPE PC73] gi|283474059|emb|CBA16560.1| hypothetical cell division protein [Xanthomonas albilineans] Length = 421 Score = 238 bits (608), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 121/272 (44%), Positives = 176/272 (64%), Gaps = 9/272 (3%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELL----TKRYAKDVSVQRVLY-DVSELIHK 94 +LDD + + +E LI +D+G+ ++E+L + +A ++QR L D+ ++H Sbjct: 143 KLDDDLLDAIETALITADVGIPATTALIEQLRKRMKAREFADATALQRALRADLLAILH- 201 Query: 95 MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 P++KP D + +P V+L VGVNGVGKTT IGKL+K+ D G +MLAAGDTFR+AA Sbjct: 202 ---PVAKPLQIDPNAKPFVVLTVGVNGVGKTTTIGKLAKRFKDEGHSLMLAAGDTFRAAA 258 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 + QL+IW +R + +DAA++A++A + +A+ D+LI DTAGRLH + LM Sbjct: 259 VAQLQIWGERNGVSVIAQGQNADAASVAFDALQAGKARGTDILIADTAGRLHTQTGLMNE 318 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 +GK+ RV+ +LD APH VL V+D TTGQNAL Q+ FHA G TGL++TK+DGTA+GG Sbjct: 319 LGKIRRVIGKLDASAPHEVLMVIDGTTGQNALSQLRQFHAAVGVTGLVVTKLDGTAKGGV 378 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + + IP+ F G+GE DL F A+ F Sbjct: 379 VFALAREFGIPIRFAGIGERPEDLRVFDAEAF 410 >gi|262172903|ref|ZP_06040581.1| signal recognition particle receptor protein FtsY [Vibrio mimicus MB-451] gi|261893979|gb|EEY39965.1| signal recognition particle receptor protein FtsY [Vibrio mimicus MB-451] Length = 392 Score = 238 bits (608), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 122/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 88 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDELFEELEEQLLIADVGMDTTTKIITNLT 147 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + + LY + E + ++L + +P + +P+VIL+VGVNGVGKTT IGK Sbjct: 148 AKASRQQLRDGEALYGLLKEEMAEILAQVEQPLVIETDKKPYVILMVGVNGVGKTTTIGK 207 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+ Sbjct: 208 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 267 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 268 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 327 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGE I+DL PF ++F Sbjct: 328 LFSEVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 383 >gi|291284804|ref|YP_003501622.1| Cell division protein FtsY [Escherichia coli O55:H7 str. CB9615] gi|290764677|gb|ADD58638.1| Cell division protein FtsY [Escherichia coli O55:H7 str. CB9615] Length = 498 Score = 238 bits (608), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + +ML + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEMLAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|153826285|ref|ZP_01978952.1| signal recognition particle-docking protein FtsY [Vibrio cholerae MZO-2] gi|149739953|gb|EDM54132.1| signal recognition particle-docking protein FtsY [Vibrio cholerae MZO-2] Length = 395 Score = 238 bits (608), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 122/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 91 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 150 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + + LY + E + ++L + +P D +P+VIL+VGVNGVGKTT IGK Sbjct: 151 AKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 210 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+ Sbjct: 211 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 270 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 271 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 330 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DG+A+GG + I +IP+ ++GVGE I+DL PF ++F Sbjct: 331 LFSDVAPITGITLTKLDGSAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 386 >gi|78043121|ref|YP_360274.1| signal recognition particle-docking protein FtsY [Carboxydothermus hydrogenoformans Z-2901] gi|77995236|gb|ABB14135.1| signal recognition particle-docking protein FtsY [Carboxydothermus hydrogenoformans Z-2901] Length = 303 Score = 238 bits (608), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 132/297 (44%), Positives = 191/297 (64%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + + +L + T + I D+ +D+ + E+LE++LI D+GV + ++VE+L Sbjct: 1 MGFFDRLKESLIKTKQNIVAKIEDVFKKSTVDEELFEKLEEILIEGDVGVKPSLELVEKL 60 Query: 71 L-TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 T R + +++ + E I K+L + P VILVVGVNGVGKTT IG Sbjct: 61 RKTARERRITDSEQLKQVLKEEILKILEAGDNKLK-NVPRTPLVILVVGVNGVGKTTTIG 119 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ G +V+LAAGDTFR+AAI+QL+IW ++ + + GSD AA+A++A K A Sbjct: 120 KLAYYFKQQGKQVLLAAGDTFRAAAIEQLEIWGNKVGCPVIKQKEGSDPAAVAFDAVKAA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A+K+DVLIIDTAGRLH + LM + K+ RV++R P AP VL VLDATTGQNAL QV Sbjct: 180 IARKIDVLIIDTAGRLHTKTNLMEELRKVKRVIERELPGAPDEVLLVLDATTGQNALSQV 239 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 E F+ TGL++TK+DGTA+GG +I I +++IP+ F+GVGE ++DL PF ++F Sbjct: 240 EYFNKALDLTGLVLTKLDGTAKGGVIIGIKSSYQIPIKFIGVGEKMDDLRPFDPQEF 296 >gi|304397880|ref|ZP_07379756.1| signal recognition particle-docking protein FtsY [Pantoea sp. aB] gi|304354591|gb|EFM18962.1| signal recognition particle-docking protein FtsY [Pantoea sp. aB] Length = 566 Score = 238 bits (607), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 121/295 (41%), Positives = 184/295 (62%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + +ELE+ L+ +D+GV ++I+ L Sbjct: 264 FFARLKRSLVKTRQNLGSGFISLFRGKKIDDDLFDELEEQLLIADVGVDTTRRIITHLTQ 323 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K + LY + + + +L + P P VIL+VGVNGVGKTT IGKL Sbjct: 324 QANRKQLRDAEALYGLLKAEMASILANVDAPLEVS-GKTPFVILMVGVNGVGKTTTIGKL 382 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A++ Sbjct: 383 ARQYQAEGKTVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKS 442 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K+ RV+K+LD APH V+ LDA+TGQNA+ Q + Sbjct: 443 RGVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDDSAPHEVMLTLDASTGQNAVSQARL 502 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + + IP+ ++GVGEGI DL PF A+DF Sbjct: 503 FNEAVGVTGIALTKLDGTAKGGVIFSVADQFGIPIRYIGVGEGIEDLRPFKAEDF 557 >gi|262404882|ref|ZP_06081436.1| signal recognition particle receptor protein FtsY [Vibrio sp. RC586] gi|262348966|gb|EEY98105.1| signal recognition particle receptor protein FtsY [Vibrio sp. RC586] Length = 399 Score = 238 bits (607), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 122/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 95 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDELFEELEEQLLIADVGMDTTTKIIANLT 154 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + + LY + E + ++L + +P + +P+VIL+VGVNGVGKTT IGK Sbjct: 155 AKASRQQLRDGEALYGLLKEEMAEILAQVEQPLVIETDKKPYVILMVGVNGVGKTTTIGK 214 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+ Sbjct: 215 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 274 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 275 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 334 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGE I+DL PF ++F Sbjct: 335 LFSEVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 390 >gi|262163696|ref|ZP_06031437.1| signal recognition particle receptor protein FtsY [Vibrio mimicus VM223] gi|262027912|gb|EEY46576.1| signal recognition particle receptor protein FtsY [Vibrio mimicus VM223] Length = 390 Score = 238 bits (607), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 122/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 86 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDELFEELEEQLLIADVGMDTTTKIITNLT 145 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + + LY + E + ++L + +P + +P+VIL+VGVNGVGKTT IGK Sbjct: 146 AKASRQQLRDGEALYGLLKEEMAEILAQVEQPLVIETDKKPYVILMVGVNGVGKTTTIGK 205 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+ Sbjct: 206 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 265 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 266 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 325 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGE I+DL PF ++F Sbjct: 326 LFSEVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 381 >gi|254226613|ref|ZP_04920194.1| signal recognition particle-docking protein FtsY [Vibrio cholerae V51] gi|125620885|gb|EAZ49238.1| signal recognition particle-docking protein FtsY [Vibrio cholerae V51] Length = 393 Score = 238 bits (607), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 123/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 89 SFFARLKRSLSRTKANIGVGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 148 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + + LY + E + ++L + +P D +P+VIL+VGVNGVGKTT IGK Sbjct: 149 AKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 208 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+ Sbjct: 209 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 268 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 269 ARGMDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 328 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGE I+DL PF ++F Sbjct: 329 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 384 >gi|152978128|ref|YP_001343757.1| signal recognition particle-docking protein FtsY [Actinobacillus succinogenes 130Z] gi|150839851|gb|ABR73822.1| signal recognition particle-docking protein FtsY [Actinobacillus succinogenes 130Z] Length = 504 Score = 238 bits (607), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 126/298 (42%), Positives = 191/298 (64%), Gaps = 7/298 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV---EE 69 + +L KG T + G S +++DD + EELE+ L+ +DIGV KI+ E+ Sbjct: 200 FFSRLLKGLVKTKQNIGAGFRSFFSGKKIDDELFEELEEQLLIADIGVPTTSKIITNLEQ 259 Query: 70 LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 T++ KD + LY + + + ++L P+++P D S +P+VIL+VGVNGVGKTT I Sbjct: 260 HATRQQLKDADL---LYQQLKQEMAEILKPVARPLVIDGSKKPYVILMVGVNGVGKTTTI 316 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+++ G VMLAAGDTFR+AA++QL++W +R V GSD+A++ ++A + Sbjct: 317 GKLARQFQQQGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQS 376 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A A+ +D+LI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q Sbjct: 377 ASARNIDILIADTAGRLQNKNNLMDELKKIVRVIKKYDESAPHEIMLTLDAGTGQNAVSQ 436 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F+ G TG+ +TK+DGTA+GG + I +P+ ++GVGE I DL F A +F Sbjct: 437 ARLFNEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLRTFDADEF 494 >gi|188535387|ref|YP_001909184.1| Cell division protein [Erwinia tasmaniensis Et1/99] gi|188030429|emb|CAO98323.1| Cell division protein [Erwinia tasmaniensis Et1/99] Length = 494 Score = 238 bits (607), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 129/300 (43%), Positives = 191/300 (63%), Gaps = 12/300 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV ++I+ L T Sbjct: 192 FFARLKRSLVKTRTNLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVDTTRRIIGNLTT 251 Query: 73 KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126 + K + LY D++E++ K+ PL D S + P VIL+VGVNGVGKTT Sbjct: 252 QASRKQLRDAEALYGLLKTDMAEILAKVESPL------DVSGKTPFVILMVGVNGVGKTT 305 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+++ G VMLAAGDTFR+AA++QL++W +R + V G+D+A++ ++A Sbjct: 306 TIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQHTGADSASVIFDAI 365 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+A+ VDVLI DTAGRL N S LM + K+ RV+K+LD APH V+ +DA+TGQNA+ Sbjct: 366 QAAKARHVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDDSAPHEVMLTIDASTGQNAI 425 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++FH G TG+ +TK+DGTA+GG + + IP+ ++GVGEGI DL F A DF Sbjct: 426 SQTKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFTIPIRYIGVGEGIEDLRSFKADDF 485 >gi|258514470|ref|YP_003190692.1| signal recognition particle-docking protein FtsY [Desulfotomaculum acetoxidans DSM 771] gi|257778175|gb|ACV62069.1| signal recognition particle-docking protein FtsY [Desulfotomaculum acetoxidans DSM 771] Length = 312 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 141/305 (46%), Positives = 196/305 (64%), Gaps = 12/305 (3%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L + T E I +++ RR +D+G EELE++LI +DIG+ A +IVE Sbjct: 1 MGFFSRLKESLTKTRKNFVEKIETLVTRRRAIDEGFYEELEEILIGADIGINTAVEIVEN 60 Query: 70 L---LTKRYAKDV-SVQRVLYDVSELIHKMLMP--LSKPFNWDFSHRPHVILVVGVNGVG 123 L + KR DV +++ VL ELI +L S N + VILVVGVNGVG Sbjct: 61 LRAEVKKRKIDDVETLKEVL---KELICNILGEGGASTALNIN-EDGLTVILVVGVNGVG 116 Query: 124 KTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 KTT IGKL+ + G KV+LAAGDTFR+AAIDQL+IW++R + + + G+D AA+A Sbjct: 117 KTTTIGKLAYYFKEELGKKVLLAAGDTFRAAAIDQLEIWSNRVGVEMIKHKEGADPAAVA 176 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A++ DVLI+DTAGRLH S LM + K+ RV+ + P AP +L VLDATTG Sbjct: 177 YDAIQAARARRSDVLIVDTAGRLHTKSNLMDELKKIKRVINKDMPEAPQEILLVLDATTG 236 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F A TG+ +TK+DGTA+GG +I I KIPV +G+GEGI DL PF Sbjct: 237 QNAVSQAKLFGEAADVTGIALTKLDGTAKGGVVISIKNALKIPVKLIGIGEGIEDLRPFE 296 Query: 303 AKDFS 307 + F+ Sbjct: 297 PEVFA 301 >gi|89092453|ref|ZP_01165407.1| signal recognition particle receptor FtsY [Oceanospirillum sp. MED92] gi|89083541|gb|EAR62759.1| signal recognition particle receptor FtsY [Oceanospirillum sp. MED92] Length = 458 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 129/301 (42%), Positives = 191/301 (63%), Gaps = 2/301 (0%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 E + ++ G + T L E + ++ + ++ +D+ + EE+E LL+ +D+GV +I Sbjct: 152 EEKKGFFARIKSGLSKTKANLTEQLGNLFLGAKEIDEDLLEEIETLLLMADVGVEATTEI 211 Query: 67 VEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 + L K K + Q + + E + +L +P N +P+VIL+VGVNGVGKT Sbjct: 212 IGRLTDKVERKQLGDAQALQVALKEELAGLLHRSEEPLNIQCEKKPYVILMVGVNGVGKT 271 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K+ G VMLAAGDTFR+AA++QL++W +R + V G+D+A++ Y+A Sbjct: 272 TTIGKLAKRFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVIYDA 331 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + AQAK VDVLI DTAGRL N LM + K++RV K+L P APH V+ VLDA TGQNA Sbjct: 332 VQSAQAKGVDVLIADTAGRLQNKDNLMQELEKVVRVTKKLSPEAPHEVMLVLDAGTGQNA 391 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L Q ++F G TG+ +TK+DGTA+GG + I +P+ F+GVGE I+DL PF +++ Sbjct: 392 LSQAKIFKDSVGVTGISLTKLDGTAKGGVIFAIAKQMDLPIRFIGVGEQIDDLRPFKSQE 451 Query: 306 F 306 F Sbjct: 452 F 452 >gi|217077937|ref|YP_002335655.1| signal recognition particle-docking protein FtsY [Thermosipho africanus TCF52B] gi|217037792|gb|ACJ76314.1| signal recognition particle-docking protein FtsY [Thermosipho africanus TCF52B] Length = 294 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 131/308 (42%), Positives = 195/308 (63%), Gaps = 20/308 (6%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---V 67 + + K +G T + I+S ++LDD +EE+E+LLI SD+G + I + Sbjct: 1 MGFFEKFKQGLKKTRESFFGKMKSILSGKKLDDETKEEIEELLILSDVGFEATEYILNRI 60 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKT 125 EEL + D E + K+L+ + FN + +P VI +VGVNG GKT Sbjct: 61 EELKGE-------------DAYESLKKVLLEILN-FNSELKIEKKPFVISMVGVNGSGKT 106 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T GKL++ S +G V+LAA DTFR+AAIDQLK+WA+RTS+ F+ + G+D+AA+A++A Sbjct: 107 TTAGKLAEYFSKSGKSVVLAACDTFRAAAIDQLKVWAERTSSTFIAHQEGADSAAVAFDA 166 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A +K+ D++I+DTAGRLH LM + K+ RV+K+ APH VL V+DA TGQN Sbjct: 167 VSHAISKEKDIVILDTAGRLHTKKNLMEELRKINRVIKKKIEDAPHEVLLVIDAVTGQNG 226 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L+Q ++F TG+++TK+DGTA+GG I I IP+ F+G+GEG++DL+PF A+D Sbjct: 227 LQQAKIFKEFVDITGIVLTKLDGTAKGGIAIAIAKELGIPIKFVGLGEGVDDLKPFDAED 286 Query: 306 F-SAVITG 312 F +A++ G Sbjct: 287 FVNALLEG 294 >gi|289668668|ref|ZP_06489743.1| cell division protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 551 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 120/263 (45%), Positives = 171/263 (65%), Gaps = 1/263 (0%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP 98 +LDD + +E+E LI +D+G+ ++E L + +++ V Q + + + +L P Sbjct: 273 KLDDDLLDEIETALITADVGIGATTALIEGLRKRMKSREFVDAQAMFKALRADLIALLQP 332 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +SKP D S +P V+L VGVNGVGKTT IGKL+K+ D G +MLAAGDTFR+AA+ QL Sbjct: 333 VSKPLVIDRSVKPFVVLTVGVNGVGKTTTIGKLAKRFKDEGNSLMLAAGDTFRAAAVAQL 392 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 + W DR + +DAA++A++A + A+A+ DVLI DTAGRLH + LM +GK+ Sbjct: 393 QAWGDRNGVSVIAQGQNADAASVAFDALQAAKARGTDVLIADTAGRLHTQTGLMNELGKI 452 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 RVL ++D APH VL V+D TTGQNA+ Q+ FHA G TGL++TK+DGTA+GG + + Sbjct: 453 RRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFAL 512 Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301 IP+ F G+GE DL F Sbjct: 513 AREFNIPIRFAGIGERPEDLRVF 535 >gi|289661713|ref|ZP_06483294.1| cell division protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 551 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 120/263 (45%), Positives = 171/263 (65%), Gaps = 1/263 (0%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP 98 +LDD + +E+E LI +D+G+ ++E L + +++ V Q + + + +L P Sbjct: 273 KLDDDLLDEIETALITADVGIGATTALIEGLRKRMKSREFVDAQAMFKALRADLIALLQP 332 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +SKP D S +P V+L VGVNGVGKTT IGKL+K+ D G +MLAAGDTFR+AA+ QL Sbjct: 333 VSKPLVIDRSVKPFVVLTVGVNGVGKTTTIGKLAKRFKDEGNSLMLAAGDTFRAAAVAQL 392 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 + W DR + +DAA++A++A + A+A+ DVLI DTAGRLH + LM +GK+ Sbjct: 393 QAWGDRNGVSVIAQGQNADAASVAFDALQAAKARGTDVLIADTAGRLHTQTGLMNELGKI 452 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 RVL ++D APH VL V+D TTGQNA+ Q+ FHA G TGL++TK+DGTA+GG + + Sbjct: 453 RRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFAL 512 Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301 IP+ F G+GE DL F Sbjct: 513 AREFNIPIRFAGIGERPEDLRVF 535 >gi|90415299|ref|ZP_01223233.1| signal recognition particle receptor FtsY [marine gamma proteobacterium HTCC2207] gi|90332622|gb|EAS47792.1| signal recognition particle receptor FtsY [marine gamma proteobacterium HTCC2207] Length = 354 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 132/306 (43%), Positives = 204/306 (66%), Gaps = 14/306 (4%) Query: 16 KLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K+ + + TS G+ D+ + ++ +DD + EELE LL+ +D+G+ +I+ +L T+R Sbjct: 57 KMQRALSRTS----RGLGDLFLGAKVIDDDLFEELETLLLMADVGIDATSQIIAQL-TER 111 Query: 75 YAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + + ++Q L D+ LI + L P + + + + P V+LVVGVNGVGKTT IG Sbjct: 112 SNRAMLKDGAALQAALRDI--LIAR-LTPCEQTLHTENAEGPFVMLVVGVNGVGKTTTIG 168 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 K+++++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + A Sbjct: 169 KMARQLQQQGQSVMLAAGDTFRAAAVEQLQVWGERNQIPVVAQHTGADSASVVFDAVESA 228 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +AK +DV+I DTAGRLHN S LM + K+ RV +LD APH VL VLDA TGQNA+ Q+ Sbjct: 229 RAKNIDVIIADTAGRLHNKSNLMEELKKVRRVAAKLDATAPHEVLLVLDAGTGQNAVAQM 288 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 FHA AG TG+++TK+DGTA+GG + + +P+ ++GVGEG++DL+PFVA+ F + Sbjct: 289 TEFHATAGVTGIVLTKLDGTAKGGVIFALAEKFSVPIRYIGVGEGVDDLQPFVAEQFVSA 348 Query: 310 ITGCLD 315 + G D Sbjct: 349 LLGQGD 354 >gi|229593151|ref|YP_002875270.1| cell division protein [Pseudomonas fluorescens SBW25] gi|229365017|emb|CAY53174.1| cell division protein [Pseudomonas fluorescens SBW25] Length = 469 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 126/303 (41%), Positives = 188/303 (62%), Gaps = 3/303 (0%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQ 64 V + + +L +G + TS + EG+ + ++ +DD + E++E L+ +D+GV Sbjct: 157 VETSKAGFFSRLKQGLSKTSASIGEGMASLFLGKKVIDDELLEDIETRLLTADVGVEATA 216 Query: 65 KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 I++ L K K ++ LY + + ML P+ P +P VILVVGVNG G Sbjct: 217 VIIQSLTQKVARKQLTDADALYKSLQAELAAMLKPVEAPLVIT-PKKPFVILVVGVNGAG 275 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ + Sbjct: 276 KTTTIGKLAKKLQSEGKKVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVIF 335 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQ Sbjct: 336 DAVQAAKARNIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQ 395 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A Sbjct: 396 NAISQAKQFNQTVQLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEA 455 Query: 304 KDF 306 + F Sbjct: 456 EPF 458 >gi|261866873|ref|YP_003254795.1| cell division protein FtsY [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412205|gb|ACX81576.1| cell division protein FtsY [Aggregatibacter actinomycetemcomitans D11S-1] Length = 453 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 188/295 (63%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G +++DD + EELE+ L+ +DIGV KI+ L Sbjct: 148 FFSRLLKGLVKTKQNIGAGFRSFFLGKKIDDDLFEELEEQLLIADIGVPTTTKIINNLTQ 207 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + + LY +L + ++L P+++P + D S +P+VIL+VGVNGVGKTT IGKL Sbjct: 208 HATRQQLQNADSLYQQLKLEMGEILKPVAQPLHIDGSKKPYVILMVGVNGVGKTTTIGKL 267 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R V GSD+A++ ++A + A A Sbjct: 268 ARKFQMEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 327 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+LI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 328 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDAGTGQNAISQAKL 387 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I +P+ ++GVGE I DL F A++F Sbjct: 388 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLREFNAEEF 442 >gi|312174145|emb|CBX82398.1| Cell division protein ftsY homolog [Erwinia amylovora ATCC BAA-2158] Length = 512 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 128/300 (42%), Positives = 189/300 (63%), Gaps = 12/300 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV ++I+ L Sbjct: 210 FFARLKRSLVKTRTNLGSGFISLFRGKKIDDELFEELEEQLLIADVGVETTRRIIGNLTN 269 Query: 73 KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126 + K + LY D++E++ K+ PL D S + P VIL+VGVNGVGKTT Sbjct: 270 QASRKQLRDAEALYGLLKTDMAEILAKVEAPL------DISGKTPFVILMVGVNGVGKTT 323 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+++ G VMLAAGDTFR+AA++QL++W R V G+D+A++ ++A Sbjct: 324 TIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNHIPVVAQHTGADSASVIFDAI 383 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+A+ VDVLI DTAGRL N + LM + K+ RV+K+LD APH V+ +DA+TGQNA+ Sbjct: 384 QAAKARHVDVLIADTAGRLQNKAHLMEELKKITRVMKKLDDSAPHEVMLTIDASTGQNAI 443 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++FH G TG+ +TK+DGTA+GG + + IP+ ++GVGEGI DL PF A DF Sbjct: 444 SQTKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFTIPIRYIGVGEGIEDLRPFKADDF 503 >gi|150025489|ref|YP_001296315.1| cell division protein FtsY [Flavobacterium psychrophilum JIP02/86] gi|149772030|emb|CAL43506.1| Cell division protein FtsY [Flavobacterium psychrophilum JIP02/86] Length = 317 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 129/302 (42%), Positives = 188/302 (62%), Gaps = 19/302 (6%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 S S++ KLTK A S ++DD V + LE++L+ SD+GV KI++ Sbjct: 24 SNSFLSKLTKAIAGKS--------------KVDDDVLDNLEEILVSSDVGVNTTLKIIQR 69 Query: 70 LLTK----RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 + + +Y + ++L + ++ L+ + + F +P+VI+VVGVNGVGK Sbjct: 70 IEARVSNNKYLGTDELNKILREEIAGLLSETNTGEATKFEIPAHKKPYVIMVVGVNGVGK 129 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+ + +G V+L AGDTFR+AAIDQL+IWADR V ++GSD A++A++ Sbjct: 130 TTTIGKLANQFKKSGYSVVLGAGDTFRAAAIDQLQIWADRVGVPIVRQQMGSDPASVAFD 189 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 + A A+ DV+IIDTAGRLHN LM + K+ RV++++ P APH V+ VLD +TGQN Sbjct: 190 TLQSAVAQNADVVIIDTAGRLHNKIGLMNELTKIKRVMEKVIPEAPHDVMLVLDGSTGQN 249 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A Q + F A T L +TK+DGTA+GG +I I +IPV ++GVGEGINDL+ F Sbjct: 250 AFEQAKQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGINDLQVFNKY 309 Query: 305 DF 306 +F Sbjct: 310 EF 311 >gi|323702683|ref|ZP_08114344.1| signal recognition particle-docking protein FtsY [Desulfotomaculum nigrificans DSM 574] gi|323532346|gb|EGB22224.1| signal recognition particle-docking protein FtsY [Desulfotomaculum nigrificans DSM 574] Length = 309 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 136/305 (44%), Positives = 193/305 (63%), Gaps = 3/305 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L + A T E I + + R+ +D+ + E+LE++LI++D+GV A +VE Sbjct: 1 MGFFSRLKESLAKTRETFVEKIDQVFTGRKGIDEELYEDLEEVLIQADVGVQTAMTLVER 60 Query: 70 LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + A++V L D+ E + ++ P N + P VI+VVGVNGVGKTT I Sbjct: 61 VRKGVKARNVQDPARLKDIFQEELEYLMGDKISPINTN-PDGPTVIMVVGVNGVGKTTTI 119 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GK++ + G KV+LAAGDTFR+AAIDQL+IWADR D + + G+D A+AY+A Sbjct: 120 GKMAHNYKEQGKKVLLAAGDTFRAAAIDQLEIWADRVGVDIIKHQEGADPGAVAYDAVHA 179 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+++K DVL+IDTAGRLHN LM + K+ R++ R P APH VL VLDATTGQNAL Q Sbjct: 180 ARSRKADVLLIDTAGRLHNKGHLMEELRKVHRIIAREMPGAPHEVLLVLDATTGQNALSQ 239 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 ++F TG+ +TK+DGTA+GG + IV IPV +G+GE ++DL PF KDF A Sbjct: 240 AKIFSEAVNVTGIALTKLDGTAKGGVITAIVTEMAIPVKLIGIGERMDDLRPFNPKDFIA 299 Query: 309 VITGC 313 + G Sbjct: 300 ALYGL 304 >gi|300718827|ref|YP_003743630.1| cell division protein [Erwinia billingiae Eb661] gi|299064663|emb|CAX61783.1| Cell division protein [Erwinia billingiae Eb661] Length = 521 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 127/300 (42%), Positives = 191/300 (63%), Gaps = 12/300 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV ++I++ L Sbjct: 219 FFARLKRSLVKTRQNLGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTRRIIKNLTQ 278 Query: 73 KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126 + K + LY ++SE++ K+ PL D + + P VIL+VGVNGVGKTT Sbjct: 279 QANRKQLRDAEALYGLLKQEMSEILAKVEEPL------DVTGKTPFVILMVGVNGVGKTT 332 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+++ G VMLAAGDTFR+AA++QL++W R + + + GSD+A++ ++A Sbjct: 333 TIGKLARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQQTGSDSASVIFDAI 392 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+A+ VDVLI DTAGRL N S LM + K+ RV+K+LD APH V+ +DA+TGQNA+ Sbjct: 393 QAAKARNVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDDQAPHEVMLTIDASTGQNAI 452 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++FH G TG+ +TK+DGTA+GG + + IP+ ++GVGEGI DL F A DF Sbjct: 453 SQTKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFSIPIRYIGVGEGIEDLRAFKADDF 512 >gi|292489957|ref|YP_003532849.1| cell division protein FtsY [Erwinia amylovora CFBP1430] gi|291555396|emb|CBA23808.1| Cell division protein ftsY homolog [Erwinia amylovora CFBP1430] Length = 494 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 128/300 (42%), Positives = 189/300 (63%), Gaps = 12/300 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV ++I+ L Sbjct: 192 FFARLKRSLVKTRTNLGSGFISLFRGKKIDDELFEELEEQLLIADVGVETTRRIIGNLTN 251 Query: 73 KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126 + K + LY D++E++ K+ PL D S + P VIL+VGVNGVGKTT Sbjct: 252 QASRKQLRDAEALYGLLKTDMAEILAKVEAPL------DISGKTPFVILMVGVNGVGKTT 305 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+++ G VMLAAGDTFR+AA++QL++W R V G+D+A++ ++A Sbjct: 306 TIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNHIPVVAQHTGADSASVIFDAI 365 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+A+ VDVLI DTAGRL N + LM + K+ RV+K+LD APH V+ +DA+TGQNA+ Sbjct: 366 QAAKARHVDVLIADTAGRLQNKAHLMEELKKITRVMKKLDDSAPHEVMLTIDASTGQNAI 425 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++FH G TG+ +TK+DGTA+GG + + IP+ ++GVGEGI DL PF A DF Sbjct: 426 SQTKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFTIPIRYIGVGEGIEDLRPFKADDF 485 >gi|292900987|ref|YP_003540356.1| cell division protein [Erwinia amylovora ATCC 49946] gi|291200835|emb|CBJ47969.1| cell division protein [Erwinia amylovora ATCC 49946] Length = 496 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 128/300 (42%), Positives = 189/300 (63%), Gaps = 12/300 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV ++I+ L Sbjct: 194 FFARLKRSLVKTRTNLGSGFISLFRGKKIDDELFEELEEQLLIADVGVETTRRIIGNLTN 253 Query: 73 KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126 + K + LY D++E++ K+ PL D S + P VIL+VGVNGVGKTT Sbjct: 254 QASRKQLRDAEALYGLLKTDMAEILAKVEAPL------DISGKTPFVILMVGVNGVGKTT 307 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+++ G VMLAAGDTFR+AA++QL++W R V G+D+A++ ++A Sbjct: 308 TIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNHIPVVAQHTGADSASVIFDAI 367 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+A+ VDVLI DTAGRL N + LM + K+ RV+K+LD APH V+ +DA+TGQNA+ Sbjct: 368 QAAKARHVDVLIADTAGRLQNKAHLMEELKKITRVMKKLDDSAPHEVMLTIDASTGQNAI 427 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++FH G TG+ +TK+DGTA+GG + + IP+ ++GVGEGI DL PF A DF Sbjct: 428 SQTKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFTIPIRYIGVGEGIEDLRPFKADDF 487 >gi|270264287|ref|ZP_06192554.1| hypothetical protein SOD_g02240 [Serratia odorifera 4Rx13] gi|270041936|gb|EFA15033.1| hypothetical protein SOD_g02240 [Serratia odorifera 4Rx13] Length = 525 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 127/299 (42%), Positives = 188/299 (62%), Gaps = 10/299 (3%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV KI+ L Sbjct: 223 FFARLKRSLVKTKQNLGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTSKIITSLTQ 282 Query: 73 KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 K + LY ++SE++ K+ PL P+VIL+VGVNGVGKTT Sbjct: 283 HASRKQLKDAEALYGKLKEEMSEILTKVEQPLDV-----GGKNPYVILMVGVNGVGKTTT 337 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ Y+A + Sbjct: 338 IGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNRIPVVAQHTGADSASVIYDAVQ 397 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+A+ +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Sbjct: 398 AAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDDQAPHEVMLTLDASTGQNAVS 457 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++F+ G TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL PF A DF Sbjct: 458 QAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADDF 516 >gi|332159847|ref|YP_004296424.1| cell division protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607607|emb|CBY29105.1| signal recognition particle receptor protein FtsY (=alpha subunit) [Yersinia enterocolitica subsp. palearctica Y11] gi|325664077|gb|ADZ40721.1| cell division protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 481 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 127/295 (43%), Positives = 188/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 179 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 238 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + KP + P VIL+VGVNGVGKTT IGKL Sbjct: 239 HASRKQLKDAEALYGKLKEEMSEILSKVDKPLDVS-GKNPFVILMVGVNGVGKTTTIGKL 297 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W DR V G+D+A++ ++A + A+A Sbjct: 298 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNKIAVVAQHTGADSASVIFDAIQAAKA 357 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 358 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 417 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF A DF Sbjct: 418 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFKADDF 472 >gi|312963639|ref|ZP_07778120.1| signal recognition particle-docking protein FtsY [Pseudomonas fluorescens WH6] gi|311282148|gb|EFQ60748.1| signal recognition particle-docking protein FtsY [Pseudomonas fluorescens WH6] Length = 463 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 125/296 (42%), Positives = 187/296 (63%), Gaps = 3/296 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L +G + TS + EG+ + ++ +DD + E++E L+ +D+GV I++ L Sbjct: 158 FFARLKQGLSKTSASIGEGMASLFLGKKVIDDELLEDIETRLLTADVGVEATAVIIQSLT 217 Query: 72 TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K K ++ LY + + ML P+ P ++P VILVVGVNG GKTT IGK Sbjct: 218 QKVARKQLTDADALYKSLQAELAAMLKPVEAPLVIT-PNKPFVILVVGVNGAGKTTTIGK 276 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + A+ Sbjct: 277 LAKKLQGEGKKVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVIFDAVQAAK 336 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q + Sbjct: 337 ARNIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAISQAK 396 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A+ F Sbjct: 397 QFNQTVQLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 452 >gi|283835857|ref|ZP_06355598.1| cell division protein FtsY [Citrobacter youngae ATCC 29220] gi|291068030|gb|EFE06139.1| cell division protein FtsY [Citrobacter youngae ATCC 29220] Length = 494 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 192 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 251 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 252 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 310 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R S + G+D+A++ ++A + A+A Sbjct: 311 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNSIPVIAQHTGADSASVIFDAIQAAKA 370 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 371 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEVMLTIDASTGQNAISQAKL 430 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 431 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 485 >gi|313901969|ref|ZP_07835385.1| signal recognition particle-docking protein FtsY [Thermaerobacter subterraneus DSM 13965] gi|313467758|gb|EFR63256.1| signal recognition particle-docking protein FtsY [Thermaerobacter subterraneus DSM 13965] Length = 311 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 135/294 (45%), Positives = 183/294 (62%), Gaps = 2/294 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 KL G A T +L I ++ LD+ + EELE +LI +D+GVA Q+++E L + Sbjct: 5 KLKAGLARTREQLAGRIRAVVQGAALDEALFEELEAVLITADVGVATTQRLLERLRERVR 64 Query: 76 AKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSK 133 A+ V V ++E + ML ++ P VILVVGVNG GKTT +GKL+ Sbjct: 65 AEGVRDAAAVPGLLAEEMRGMLEAVAAPPAAPGRGPGPLVILVVGVNGSGKTTTVGKLAA 124 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 + G KV++ A DTFR+AAIDQL+ W R AD V G+D AA+A++A + AQA+ Sbjct: 125 RYRQEGWKVVVGAADTFRAAAIDQLERWCQRAGADLVRQHPGADPAAVAFDALQAAQARG 184 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 DVL++DTAGRLH LM + K RVL+RLDP APH VL VLDATTGQNAL Q F Sbjct: 185 ADVLLVDTAGRLHTRVNLMEELRKTQRVLQRLDPTAPHEVLLVLDATTGQNALAQARHFT 244 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 G TG+++TK+DGTARGG ++ I ++PV ++G GEG +DL PF +F+ Sbjct: 245 EAVGVTGIVLTKLDGTARGGMVVAIADQLRLPVKWVGTGEGADDLAPFDPGEFT 298 >gi|311696381|gb|ADP99254.1| signal recognition particle-docking protein FtsY [marine bacterium HP15] Length = 397 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 128/301 (42%), Positives = 197/301 (65%), Gaps = 8/301 (2%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +S ++ KG T L G++D+ S +++D+ + EE+E L+ +D+GV +I++ Sbjct: 93 VSVFERIKKGLGKTRASLTGGLSDMFSLGKKIDEELLEEIETTLLMADVGVTATSEIIDS 152 Query: 70 L---LTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 L L + KD ++++ L D +H +L ++KP D P+VIL+VGVNGVGKT Sbjct: 153 LTDKLERNQLKDGEALRKALRDE---LHGLLKDVTKPLQIDSGKTPYVILMVGVNGVGKT 209 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+KK + G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A Sbjct: 210 TTIGKLTKKFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNKVPVVAQHTGADSASVIFDA 269 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + A+++ VDV+I DTAGRL N LM + K++RV+K+LD APH V+ VLDA TGQNA Sbjct: 270 IQSAKSRGVDVVIADTAGRLQNKDNLMQELEKVVRVMKKLDESAPHEVMLVLDAGTGQNA 329 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L Q ++F G +G+ +TK+DGTA+GG + I ++P+ F+GVGE ++DL F A+ Sbjct: 330 LSQAQVFQQAVGVSGITLTKLDGTAKGGIVFAIARQLQLPIRFIGVGEQVDDLRSFDAET 389 Query: 306 F 306 F Sbjct: 390 F 390 >gi|123440617|ref|YP_001004611.1| cell division protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087578|emb|CAL10359.1| cell division protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 507 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 127/295 (43%), Positives = 188/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 205 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 264 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + KP + P VIL+VGVNGVGKTT IGKL Sbjct: 265 HASRKQLKDAEALYGKLKEEMSEILSKVDKPLDVS-GKNPFVILMVGVNGVGKTTTIGKL 323 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W DR V G+D+A++ ++A + A+A Sbjct: 324 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNKIAVVAQHTGADSASVIFDAIQAAKA 383 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 384 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 443 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF A DF Sbjct: 444 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFKADDF 498 >gi|73667502|ref|YP_303518.1| signal recognition particle-docking protein FtsY [Ehrlichia canis str. Jake] gi|72394643|gb|AAZ68920.1| signal recognition particle-docking protein FtsY [Ehrlichia canis str. Jake] Length = 310 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 130/304 (42%), Positives = 200/304 (65%), Gaps = 7/304 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 ++ + KG TS KL +GI I SS +++D EEL++LLI +D+G A + ++L Sbjct: 9 FLNNIKKGLFKTSSKLSDGIKKIFSSEKKIDQETLEELKELLITADVGYENASLLTQKLA 68 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++ +V V ++E I +L+ + KP + +++PHVI++ G NG GKTT IGKL Sbjct: 69 EIKF-NEVDYSIVKQKLAESIEDILLQVEKPLS--INNKPHVIMICGTNGNGKTTTIGKL 125 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K + G KV++AA DTFR+AA +QL +W+ + + V G+DAA++AY+A +QA Sbjct: 126 AHKFKNEGKKVLVAACDTFRAAATEQLIVWSQKVNFPVVTGNQGADAASIAYQAMQQALN 185 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +VDVL+IDTAGRLHN+ LM + K+ R++ + D +APH+V+ +LDATTGQNA+ QVE Sbjct: 186 DQVDVLLIDTAGRLHNHKNLMEELAKIKRIIGKHDNNAPHNVILILDATTGQNAIHQVEA 245 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F +GLIMTK+DGTA+GG +I I +K+ ++ +G+GE + L+ F AK+F+ Sbjct: 246 FSQFVNISGLIMTKLDGTAKGGVVIKIAQKYKLSIHAIGIGEHVEQLQDFSAKEFA---I 302 Query: 312 GCLD 315 G LD Sbjct: 303 GLLD 306 >gi|253997119|ref|YP_003049183.1| signal recognition particle-docking protein FtsY [Methylotenera mobilis JLW8] gi|253983798|gb|ACT48656.1| signal recognition particle-docking protein FtsY [Methylotenera mobilis JLW8] Length = 336 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 123/298 (41%), Positives = 188/298 (63%), Gaps = 5/298 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW +L +G A T +L + I ++D V EELE +L+ SD+G+ Q +++++ Sbjct: 35 LSWTARLKQGLAKTRNQLGNQLASIFGGGKIDAEVYEELETILLTSDVGINATQHLLDDI 94 Query: 71 --LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 KR + D +VQ + + + + +L PL +P H+P +I++ GVNG GKTT I Sbjct: 95 KGRVKRQSLDDTVQ-LKAALKDALSDLLSPLEQPLATS-KHQPFIIMLAGVNGAGKTTTI 152 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+K+ G V++AAGDTFR+AA +QL++W +R + V ++ D AA+ ++A Sbjct: 153 GKLAKQFQSEGKSVLIAAGDTFRAAAREQLQVWGERNNV-HVVAQTSGDPAAVMFDAINS 211 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+AK +D+++ DTAGRL LM I K+ RV+ + P APH VL VLDA TGQNA+ Q Sbjct: 212 ARAKNIDIVLADTAGRLPTQMHLMDEIAKVKRVMDKALPGAPHEVLLVLDANTGQNAVSQ 271 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 V++F G TGL+++K+DGTA+GG + I IP+ ++G+GE I+DL PF A +F Sbjct: 272 VKIFDDALGVTGLVLSKLDGTAKGGVIAAIAQARPIPIRYIGIGEAIDDLRPFNANEF 329 >gi|254243472|ref|ZP_04936794.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa 2192] gi|126196850|gb|EAZ60913.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa 2192] Length = 362 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 129/297 (43%), Positives = 189/297 (63%), Gaps = 4/297 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEELL 71 + +L +G + TS + EG+ + R+ D + + L+ +D+GV IV+ L Sbjct: 56 FFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL- 114 Query: 72 TKRYA-KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 TKR A K+++ LY + E + +L P+ +P D + P+VILVVGVNGVGKTT IG Sbjct: 115 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 174 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + A Sbjct: 175 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 234 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q Sbjct: 235 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 294 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A F Sbjct: 295 KQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAF 351 >gi|301329789|ref|ZP_07222524.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 78-1] gi|300844138|gb|EFK71898.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 78-1] Length = 497 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 188/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 254 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L +++P N + P VIL+VGVNGVGKTT IGKL Sbjct: 255 GASRKQLRDAEALYGLLKEEMGEILAKVNEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 313 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 314 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 433 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 434 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488 >gi|323944312|gb|EGB40387.1| signal recognition particle-docking protein FtsY [Escherichia coli H120] Length = 515 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 213 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 272 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 273 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 331 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 332 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 391 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 392 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 451 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 452 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 506 >gi|188577553|ref|YP_001914482.1| signal recognition particle-docking protein FtsY [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522005|gb|ACD59950.1| signal recognition particle-docking protein FtsY [Xanthomonas oryzae pv. oryzae PXO99A] Length = 311 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 119/263 (45%), Positives = 171/263 (65%), Gaps = 1/263 (0%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP 98 +LDD + +E+E LI +D+G+ ++E L + +++ V Q + + + +L P Sbjct: 33 KLDDDLLDEIETALITADVGIGATTALIEGLRKRMKSREFVDAQAMFKALRADLIALLQP 92 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +SKP D + +P V+L VGVNGVGKTT IGKL+K+ D G +MLAAGDTFR+AA+ QL Sbjct: 93 VSKPLVIDRARKPFVVLTVGVNGVGKTTTIGKLAKRFKDEGNSLMLAAGDTFRAAAVAQL 152 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 + W DR + +DAA++A++A + A+A+ DVLI DTAGRLH + LM +GK+ Sbjct: 153 QAWGDRNGVAVIAQGQNADAASVAFDALQAAKARGTDVLIADTAGRLHTQTGLMNELGKI 212 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 RVL ++D APH VL V+D TTGQNA+ Q+ FHA G TGL++TK+DGTA+GG + + Sbjct: 213 RRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFAL 272 Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301 IP+ F G+GE DL F Sbjct: 273 AREFNIPIRFAGIGERPEDLRVF 295 >gi|256025812|ref|ZP_05439677.1| cell division protein FtsY [Escherichia sp. 4_1_40B] gi|301645907|ref|ZP_07245821.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 146-1] gi|307140147|ref|ZP_07499503.1| cell division protein FtsY [Escherichia coli H736] gi|331644164|ref|ZP_08345293.1| cell division protein FtsY [Escherichia coli H736] gi|301075896|gb|EFK90702.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 146-1] gi|315614733|gb|EFU95373.1| signal recognition particle-docking protein FtsY [Escherichia coli 3431] gi|331036458|gb|EGI08684.1| cell division protein FtsY [Escherichia coli H736] Length = 497 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 254 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 255 GASRKQLRDAEALYGQLKEEMGEILAKVDEPLNVE-GKAPFVILMVGVNGVGKTTTIGKL 313 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 314 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 433 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 434 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488 >gi|331659760|ref|ZP_08360698.1| cell division protein FtsY [Escherichia coli TA206] gi|331052975|gb|EGI25008.1| cell division protein FtsY [Escherichia coli TA206] Length = 498 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|298528315|ref|ZP_07015719.1| signal recognition particle-docking protein FtsY [Desulfonatronospira thiodismutans ASO3-1] gi|298511967|gb|EFI35869.1| signal recognition particle-docking protein FtsY [Desulfonatronospira thiodismutans ASO3-1] Length = 435 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 131/301 (43%), Positives = 188/301 (62%), Gaps = 9/301 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 KL+ G + T +L I ++SS D+ EELE++LI SD+G A ++V++L T Sbjct: 140 KLSHGLSKTKAQLSRQIDQLLSSSTSFDEAFWEELEEILIMSDVGHKAATELVQKLRT-- 197 Query: 75 YAKDVSVQRV--LYDVSELIHKMLMPL-SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q V + +L+ K L +P P VIL++GVNGVGKTT I KL Sbjct: 198 ---EVSGQSVDDPQEFKQLLGKELAAFFPRPQKRIKPDPPEVILMIGVNGVGKTTTIAKL 254 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + G +VM+AAGDTFR+AAI+QL IWA+R A+F G+D A++AYEA +A A Sbjct: 255 AHRDRMKGRRVMIAAGDTFRAAAIEQLGIWAERADAEFYAKSHGADPASVAYEALDKAVA 314 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + DVL +DTAGRLH S LM + KM V+++ P +PH + VLDATTGQNA+ Q E+ Sbjct: 315 EGTDVLYVDTAGRLHTKSDLMQELKKMKSVMQKKRPGSPHRTILVLDATTGQNAMSQTEL 374 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F +I+TK+DGTA+GG ++ I + H+IP+ F+G+GE + DL PF + F+ + Sbjct: 375 FAREINIDEIILTKLDGTAKGGVMVAIALQHQIPITFIGLGEKMEDLRPFEPESFARALL 434 Query: 312 G 312 G Sbjct: 435 G 435 >gi|157158382|ref|YP_001464929.1| cell division protein FtsY [Escherichia coli E24377A] gi|218697147|ref|YP_002404814.1| cell division protein FtsY [Escherichia coli 55989] gi|157080412|gb|ABV20120.1| cell division protein FtsY [Escherichia coli E24377A] gi|218353879|emb|CAV00274.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein ; conserved hypothetical protein [Escherichia coli 55989] gi|323182929|gb|EFZ68330.1| signal recognition particle-docking protein FtsY [Escherichia coli 1357] Length = 497 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 254 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 255 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 313 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 314 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 374 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 433 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 434 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488 >gi|258625089|ref|ZP_05720008.1| signal recognition particle-docking protein FtsY [Vibrio mimicus VM603] gi|258582640|gb|EEW07470.1| signal recognition particle-docking protein FtsY [Vibrio mimicus VM603] Length = 400 Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 121/295 (41%), Positives = 191/295 (64%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + + T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 97 FFARLKRSLSRTKANIGAGFFGLFKGKKIDDELFEELEEQLLIADVGMDTTTKIITNLTA 156 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + + LY + E + ++L + +P + +P+VIL+VGVNGVGKTT IGKL Sbjct: 157 KASRQQLRDGEALYGLLKEEMAEILAQVEQPLVIETDKKPYVILMVGVNGVGKTTTIGKL 216 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+A Sbjct: 217 AKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAKA 276 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q ++ Sbjct: 277 RGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAKL 336 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGE I+DL PF ++F Sbjct: 337 FSEVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 391 >gi|209920923|ref|YP_002295007.1| cell division protein FtsY [Escherichia coli SE11] gi|209914182|dbj|BAG79256.1| ABC transporter permease component [Escherichia coli SE11] gi|324018641|gb|EGB87860.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 117-3] Length = 498 Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|15893128|ref|NP_360842.1| cell division protein ftsY [Rickettsia conorii str. Malish 7] gi|81527868|sp|Q92GB8|FTSY_RICCN RecName: Full=Cell division protein ftsY homolog gi|15620335|gb|AAL03743.1| cell division protein ftsY [Rickettsia conorii str. Malish 7] Length = 303 Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 133/303 (43%), Positives = 193/303 (63%), Gaps = 3/303 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 +S KL + + TS K+ EGI I ++LD G EELE+LLI SD+ V V I+EE Sbjct: 2 ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAGTLEELEELLISSDMSVLVVTNIIEEF 61 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++ K++ V +++LI + L + PF ++ +VILV GVNG GKTT IGK Sbjct: 62 KKVKFDKEIDSDTVKEALAKLIEQQLSKSAIPFTLS-ENKLNVILVCGVNGAGKTTTIGK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ S G KV +AA DTFR+AA++QL WADR +A + E +D A++AY +++ Sbjct: 121 LASMYSAQGKKVAVAACDTFRAAAVNQLSTWADRANALLITGEESADPASVAYRGMEESI 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249 + +D+L IDTAGRLHN LM + K+++V+K+LD +AP HSVL V+DA TGQN QV Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVL-VIDAITGQNTYNQV 239 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F+ TGLI+TK+DG+A+ G ++ +V +P+YF+G+GE I DL+ F DF+ Sbjct: 240 EHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNQHDFARN 299 Query: 310 ITG 312 + G Sbjct: 300 LVG 302 >gi|323188945|gb|EFZ74229.1| signal recognition particle-docking protein FtsY [Escherichia coli RN587/1] Length = 498 Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|320194034|gb|EFW68667.1| cell division protein FtsY [Escherichia coli WV_060327] Length = 498 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|325925082|ref|ZP_08186502.1| cell division protein FtsY (SRP receptor) [Xanthomonas perforans 91-118] gi|325544498|gb|EGD15861.1| cell division protein FtsY (SRP receptor) [Xanthomonas perforans 91-118] Length = 551 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 120/264 (45%), Positives = 173/264 (65%), Gaps = 3/264 (1%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLM 97 +LDD + +E+E LI +D+G+ +++ L + +++ + L+ ++LI +L Sbjct: 273 KLDDDLLDEIETALITADVGIGATTALIDGLRKRMKSREFVDAQALFKALRADLIA-LLQ 331 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P+SKP D S +P V+L VGVNGVGKTT IGKL+K+ D G +MLAAGDTFR+AA+ Q Sbjct: 332 PVSKPLVIDRSLKPFVVLTVGVNGVGKTTTIGKLAKRFKDEGNSLMLAAGDTFRAAAVAQ 391 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ W DR + +DAA++A++A + A+A+ DVLI DTAGRLH + LM +GK Sbjct: 392 LQAWGDRNGVAVIAQGQNADAASVAFDALQAAKARGTDVLIADTAGRLHTQTGLMNELGK 451 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + RVL ++D APH VL V+D TTGQNA+ Q+ FHA G TGL++TK+DGTA+GG + Sbjct: 452 IRRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVLTKLDGTAKGGVVFA 511 Query: 278 IVVTHKIPVYFLGVGEGINDLEPF 301 + IP+ F G+GE DL F Sbjct: 512 LAREFNIPIRFAGIGERPEDLRVF 535 >gi|238763644|ref|ZP_04624604.1| Cell division protein ftsY [Yersinia kristensenii ATCC 33638] gi|238698122|gb|EEP90879.1| Cell division protein ftsY [Yersinia kristensenii ATCC 33638] Length = 502 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 127/295 (43%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 200 FFARLKRSLIKTKQNLGSGFMGLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 259 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + KP + P VIL+VGVNGVGKTT IGKL Sbjct: 260 HASRKQLKDAEALYGKLKEEMSEILSKVDKPLDVS-GKNPFVILMVGVNGVGKTTTIGKL 318 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W DR V G+D+A++ ++A + A+A Sbjct: 319 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNKIAVVAQHTGADSASVIFDAIQAAKA 378 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVL+ DTAGRL N S LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 379 RGIDVLLADTAGRLQNKSHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 438 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF A DF Sbjct: 439 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFKADDF 493 >gi|306816192|ref|ZP_07450330.1| cell division protein FtsY [Escherichia coli NC101] gi|305850588|gb|EFM51045.1| cell division protein FtsY [Escherichia coli NC101] Length = 498 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|163748790|ref|ZP_02156042.1| cell division protein FtsY [Shewanella benthica KT99] gi|161331564|gb|EDQ02369.1| cell division protein FtsY [Shewanella benthica KT99] Length = 456 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 126/295 (42%), Positives = 188/295 (63%), Gaps = 1/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L +G TS + G + +++DD + EELE+ L+ +D+GV ++++ L Sbjct: 148 FFARLKRGLKRTSENIGSGFIGLFKGKKIDDDLFEELEEQLLIADVGVETTTRLIDSLTE 207 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K + LY++ E + K L P+S P + + P VIL+VGVNGVGKTT IGKL Sbjct: 208 QASRKQLKDGEALYELLREEMQKTLEPVSIPLVPESADGPFVILMVGVNGVGKTTTIGKL 267 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +K+ G VMLAAGDTFR+AA++QL++W R + G+D+A++ ++A + A+A Sbjct: 268 AKQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVIAQHTGADSASVLFDALQAARA 327 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N LM + K++RV+K+LD +APH V+ LDA TGQNA+ Q E+ Sbjct: 328 RNIDVLIADTAGRLQNKVHLMDELKKIVRVMKKLDENAPHEVMLTLDAGTGQNAISQAEL 387 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G TG+ ++K+DGTA+GG + I IP+ +GVGE I+DL F AKDF Sbjct: 388 FKKAVGVTGITISKLDGTAKGGVIFAIADKFGIPIRHIGVGEQIDDLRTFDAKDF 442 >gi|58582766|ref|YP_201782.1| cell division protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427360|gb|AAW76397.1| cell division protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 601 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 119/263 (45%), Positives = 171/263 (65%), Gaps = 1/263 (0%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP 98 +LDD + +E+E LI +D+G+ ++E L + +++ V Q + + + +L P Sbjct: 323 KLDDDLLDEIETALITADVGIGATTALIEGLRKRMKSREFVDAQAMFKALRADLIALLQP 382 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +SKP D + +P V+L VGVNGVGKTT IGKL+K+ D G +MLAAGDTFR+AA+ QL Sbjct: 383 VSKPLVIDRARKPFVVLTVGVNGVGKTTTIGKLAKRFKDEGNSLMLAAGDTFRAAAVAQL 442 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 + W DR + +DAA++A++A + A+A+ DVLI DTAGRLH + LM +GK+ Sbjct: 443 QAWGDRNGVAVIAQGQNADAASVAFDALQAAKARGTDVLIADTAGRLHTQTGLMNELGKI 502 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 RVL ++D APH VL V+D TTGQNA+ Q+ FHA G TGL++TK+DGTA+GG + + Sbjct: 503 RRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFAL 562 Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301 IP+ F G+GE DL F Sbjct: 563 AREFNIPIRFAGIGERPEDLRVF 585 >gi|325922810|ref|ZP_08184538.1| cell division protein FtsY [Xanthomonas gardneri ATCC 19865] gi|325546697|gb|EGD17823.1| cell division protein FtsY [Xanthomonas gardneri ATCC 19865] Length = 569 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 121/263 (46%), Positives = 171/263 (65%), Gaps = 1/263 (0%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP 98 +LDD + +E+E LI +D+G+ +VE L + +++ V Q + + + +L P Sbjct: 291 KLDDDLLDEIETALITADVGIGATTALVEGLRKRMKSREFVDAQAMFKALRADLIALLQP 350 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +SKP D S +P VIL VGVNGVGKTT IGKL+K+ D G +MLAAGDTFR+AA+ QL Sbjct: 351 VSKPLVIDRSVKPFVILTVGVNGVGKTTTIGKLAKRFKDEGNSLMLAAGDTFRAAAVAQL 410 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 + W DR + +DAA++A++A + A+A+ +VLI DTAGRLH + LM +GK+ Sbjct: 411 QAWGDRNGVAVIAQGQNADAASVAFDALQAAKARGTEVLIADTAGRLHTQTGLMNELGKI 470 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 RVL ++D APH VL V+D TTGQNA+ Q+ FHA G TGL++TK+DGTA+GG + + Sbjct: 471 RRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFAL 530 Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301 IP+ F G+GE DL F Sbjct: 531 AREFNIPIRFAGIGERPEDLRVF 553 >gi|325915143|ref|ZP_08177469.1| signal recognition particle-docking protein FtsY [Xanthomonas vesicatoria ATCC 35937] gi|325538665|gb|EGD10335.1| signal recognition particle-docking protein FtsY [Xanthomonas vesicatoria ATCC 35937] Length = 547 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 119/263 (45%), Positives = 171/263 (65%), Gaps = 1/263 (0%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP 98 +LDD + +E+E LI +D+G+ ++E L + +++ V Q + + + +L P Sbjct: 269 KLDDDLLDEIETALITADVGIGATTALIEGLRKRMKSREFVDAQAMFKALRADLIALLQP 328 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +SKP D S +P V+L VGVNGVGKTT IGKL+K+ D G +MLAAGDTFR+AA+ QL Sbjct: 329 VSKPLVIDRSVKPFVVLTVGVNGVGKTTTIGKLAKRFKDDGNSLMLAAGDTFRAAAVAQL 388 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 + W DR + +DAA++A++A + A+A+ D+LI DTAGRLH + LM +GK+ Sbjct: 389 QAWGDRNGVAVIAQGQNADAASVAFDALQAAKARGTDILIADTAGRLHTQTGLMNELGKI 448 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 RVL ++D APH VL V+D TTGQNA+ Q+ FHA G TGL++TK+DGTA+GG + + Sbjct: 449 RRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFAL 508 Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301 IP+ F G+GE DL F Sbjct: 509 AREFNIPIRFAGIGERPEDLRVF 531 >gi|238793545|ref|ZP_04637169.1| Cell division protein ftsY [Yersinia intermedia ATCC 29909] gi|238727135|gb|EEQ18665.1| Cell division protein ftsY [Yersinia intermedia ATCC 29909] Length = 505 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 127/295 (43%), Positives = 188/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 203 FFARLKRSLLKTKQNLGSGFLGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 262 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + KP + P VIL+VGVNGVGKTT IGKL Sbjct: 263 HASRKQLKDAEALYGKLKEEMSEILSKVDKPLDVS-GKNPFVILMVGVNGVGKTTTIGKL 321 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W DR V G+D+A++ ++A + A+A Sbjct: 322 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNKIAVVAQHTGADSASVIFDAIQAAKA 381 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 382 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 441 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF A DF Sbjct: 442 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFKADDF 496 >gi|84624642|ref|YP_452014.1| cell division protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368582|dbj|BAE69740.1| cell division protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 601 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 119/263 (45%), Positives = 171/263 (65%), Gaps = 1/263 (0%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP 98 +LDD + +E+E LI +D+G+ ++E L + +++ V Q + + + +L P Sbjct: 323 KLDDDLLDEIETALITADVGIGATTALIEGLRKRMKSREFVDAQAMFKALRADLIALLQP 382 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +SKP D + +P V+L VGVNGVGKTT IGKL+K+ D G +MLAAGDTFR+AA+ QL Sbjct: 383 VSKPLVIDRARKPFVVLTVGVNGVGKTTTIGKLAKRFKDEGNSLMLAAGDTFRAAAVAQL 442 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 + W DR + +DAA++A++A + A+A+ DVLI DTAGRLH + LM +GK+ Sbjct: 443 QAWGDRNGVAVIAQGQNADAASVAFDALQAAKARGTDVLIADTAGRLHTQTGLMNELGKI 502 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 RVL ++D APH VL V+D TTGQNA+ Q+ FHA G TGL++TK+DGTA+GG + + Sbjct: 503 RRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFAL 562 Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301 IP+ F G+GE DL F Sbjct: 563 AREFNIPIRFAGIGERPEDLRVF 585 >gi|324116338|gb|EGC10257.1| signal recognition particle-docking protein FtsY [Escherichia coli E1167] Length = 515 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 213 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 272 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 273 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 331 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 332 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 391 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 392 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 451 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 452 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 506 >gi|320181957|gb|EFW56863.1| cell division protein FtsY [Shigella boydii ATCC 9905] Length = 498 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|323174103|gb|EFZ59731.1| signal recognition particle-docking protein FtsY [Escherichia coli LT-68] Length = 426 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 188/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 124 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 183 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 184 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 242 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W+ R + + G+D+A++ ++A + A+A Sbjct: 243 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWSQRNNIPVIAQHTGADSASVIFDAIQAAKA 302 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 303 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 362 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 363 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 417 >gi|194431246|ref|ZP_03063539.1| cell division protein FtsY [Shigella dysenteriae 1012] gi|194420701|gb|EDX36777.1| cell division protein FtsY [Shigella dysenteriae 1012] gi|332085988|gb|EGI91152.1| signal recognition particle-docking protein FtsY [Shigella dysenteriae 155-74] Length = 497 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 254 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 255 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 313 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 314 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 433 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 434 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488 >gi|332085341|gb|EGI90513.1| signal recognition particle-docking protein FtsY [Shigella boydii 5216-82] Length = 497 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 254 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 255 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 313 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 314 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 433 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 434 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488 >gi|331649271|ref|ZP_08350357.1| cell division protein FtsY [Escherichia coli M605] gi|330909505|gb|EGH38019.1| signal recognition particle receptor protein FtsY (alpha subunit) [Escherichia coli AA86] gi|331041769|gb|EGI13913.1| cell division protein FtsY [Escherichia coli M605] Length = 498 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|297517807|ref|ZP_06936193.1| cell division protein FtsY [Escherichia coli OP50] Length = 336 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 34 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 93 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 94 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 152 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 153 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 212 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 213 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 272 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 273 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 327 >gi|34581201|ref|ZP_00142681.1| cell division protein ftsY [Rickettsia sibirica 246] gi|28262586|gb|EAA26090.1| cell division protein ftsY [Rickettsia sibirica 246] Length = 303 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 133/303 (43%), Positives = 193/303 (63%), Gaps = 3/303 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 +S KL + + TS K+ EGI I ++LD G EELE+LLI SD+ V V I+EE Sbjct: 2 ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAGTLEELEELLISSDMSVLVVTNIIEEF 61 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++ K++ V +++LI + L + PF ++ +VILV GVNG GKTT IGK Sbjct: 62 KKVKFDKEIDSDTVKEALAKLIEQQLSKSAIPFTLS-ENKLNVILVCGVNGAGKTTTIGK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ S G KV +AA DTFR+AA++QL WADR +A + E +D A++AY +++ Sbjct: 121 LAAMYSAQGKKVAVAACDTFRAAAVNQLSTWADRANALLITGEESADPASVAYHGMEESI 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249 + +D+L IDTAGRLHN LM + K+++V+K+LD +AP HSVL V+DA TGQN QV Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVL-VIDAITGQNTYNQV 239 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F+ TGLI+TK+DG+A+ G ++ +V +P+YF+G+GE I DL+ F DF+ Sbjct: 240 EHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNQHDFARN 299 Query: 310 ITG 312 + G Sbjct: 300 LVG 302 >gi|320661534|gb|EFX28949.1| signal recognition particle-docking protein FtsY [Escherichia coli O55:H7 str. USDA 5905] Length = 498 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|153948996|ref|YP_001399236.1| cell division protein FtsY [Yersinia pseudotuberculosis IP 31758] gi|152960491|gb|ABS47952.1| cell division protein FtsY [Yersinia pseudotuberculosis IP 31758] Length = 541 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 239 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 298 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + KP + P+VIL+VGVNGVGKTT IGKL Sbjct: 299 HASRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 357 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + A+A Sbjct: 358 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 417 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 418 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 477 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL PF A +F Sbjct: 478 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 532 >gi|312972271|ref|ZP_07786445.1| signal recognition particle-docking protein FtsY [Escherichia coli 1827-70] gi|310334648|gb|EFQ00853.1| signal recognition particle-docking protein FtsY [Escherichia coli 1827-70] Length = 458 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 156 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 215 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 216 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 274 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 275 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 334 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 335 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 394 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 395 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 449 >gi|215488739|ref|YP_002331170.1| cell division protein FtsY [Escherichia coli O127:H6 str. E2348/69] gi|218691749|ref|YP_002399961.1| cell division protein FtsY [Escherichia coli ED1a] gi|312968224|ref|ZP_07782434.1| signal recognition particle-docking protein FtsY [Escherichia coli 2362-75] gi|215266811|emb|CAS11252.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein [Escherichia coli O127:H6 str. E2348/69] gi|218429313|emb|CAR10272.2| fused Signal Recognition Particle (SRP) receptor: membrane binding protein ; conserved hypothetical protein [Escherichia coli ED1a] gi|222035170|emb|CAP77915.1| Cell division protein ftsY [Escherichia coli LF82] gi|312287049|gb|EFR14959.1| signal recognition particle-docking protein FtsY [Escherichia coli 2362-75] gi|312948017|gb|ADR28844.1| cell division protein FtsY [Escherichia coli O83:H1 str. NRG 857C] Length = 498 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|15803976|ref|NP_290012.1| cell division protein FtsY [Escherichia coli O157:H7 EDL933] gi|15833567|ref|NP_312340.1| cell division protein FtsY [Escherichia coli O157:H7 str. Sakai] gi|168747042|ref|ZP_02772064.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4113] gi|168753232|ref|ZP_02778239.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4401] gi|168759502|ref|ZP_02784509.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4501] gi|168765827|ref|ZP_02790834.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4486] gi|168772627|ref|ZP_02797634.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4196] gi|168779563|ref|ZP_02804570.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4076] gi|168785285|ref|ZP_02810292.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC869] gi|168797250|ref|ZP_02822257.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC508] gi|195934958|ref|ZP_03080340.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4024] gi|208809270|ref|ZP_03251607.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4206] gi|208813507|ref|ZP_03254836.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4045] gi|208819501|ref|ZP_03259821.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4042] gi|209398368|ref|YP_002272908.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4115] gi|217326123|ref|ZP_03442207.1| cell division protein FtsY [Escherichia coli O157:H7 str. TW14588] gi|254795384|ref|YP_003080221.1| cell division protein FtsY [Escherichia coli O157:H7 str. TW14359] gi|261224747|ref|ZP_05939028.1| membrane-binding signal recognition particle (SRP) receptor [Escherichia coli O157:H7 str. FRIK2000] gi|261254358|ref|ZP_05946891.1| membrane-binding signal recognition particle (SRP) receptor [Escherichia coli O157:H7 str. FRIK966] gi|12518120|gb|AAG58573.1|AE005569_13 cell division membrane protein [Escherichia coli O157:H7 str. EDL933] gi|13363787|dbj|BAB37736.1| cell division membrane protein [Escherichia coli O157:H7 str. Sakai] gi|187771445|gb|EDU35289.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4196] gi|188018305|gb|EDU56427.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4113] gi|189002631|gb|EDU71617.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4076] gi|189358908|gb|EDU77327.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4401] gi|189364762|gb|EDU83181.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4486] gi|189369833|gb|EDU88249.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4501] gi|189374442|gb|EDU92858.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC869] gi|189380153|gb|EDU98569.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC508] gi|208729071|gb|EDZ78672.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4206] gi|208734784|gb|EDZ83471.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4045] gi|208739624|gb|EDZ87306.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4042] gi|209159768|gb|ACI37201.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4115] gi|209756008|gb|ACI76316.1| cell division membrane protein [Escherichia coli] gi|209756010|gb|ACI76317.1| cell division membrane protein [Escherichia coli] gi|209756012|gb|ACI76318.1| cell division membrane protein [Escherichia coli] gi|209756014|gb|ACI76319.1| cell division membrane protein [Escherichia coli] gi|209756016|gb|ACI76320.1| cell division membrane protein [Escherichia coli] gi|217322344|gb|EEC30768.1| cell division protein FtsY [Escherichia coli O157:H7 str. TW14588] gi|254594784|gb|ACT74145.1| membrane-binding signal recognition particle (SRP) receptor [Escherichia coli O157:H7 str. TW14359] gi|320191518|gb|EFW66168.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC1212] gi|320639748|gb|EFX09342.1| signal recognition particle-docking protein FtsY [Escherichia coli O157:H7 str. G5101] gi|320645247|gb|EFX14263.1| signal recognition particle-docking protein FtsY [Escherichia coli O157:H- str. 493-89] gi|320650558|gb|EFX19024.1| signal recognition particle-docking protein FtsY [Escherichia coli O157:H- str. H 2687] gi|320655751|gb|EFX23674.1| signal recognition particle-docking protein FtsY [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320666557|gb|EFX33540.1| signal recognition particle-docking protein FtsY [Escherichia coli O157:H7 str. LSU-61] gi|326337566|gb|EGD61401.1| cell division protein FtsY [Escherichia coli O157:H7 str. 1044] gi|326344683|gb|EGD68432.1| cell division protein FtsY [Escherichia coli O157:H7 str. 1125] Length = 498 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|191169497|ref|ZP_03031229.1| cell division protein FtsY [Escherichia coli B7A] gi|193061759|ref|ZP_03042856.1| cell division protein FtsY [Escherichia coli E22] gi|218556015|ref|YP_002388928.1| cell division protein FtsY [Escherichia coli IAI1] gi|256020812|ref|ZP_05434677.1| cell division protein FtsY [Shigella sp. D9] gi|260846248|ref|YP_003224026.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein/hypothetical protein FtsY [Escherichia coli O103:H2 str. 12009] gi|300907385|ref|ZP_07125033.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 84-1] gi|300926838|ref|ZP_07142606.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 182-1] gi|301305997|ref|ZP_07212078.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 124-1] gi|307311869|ref|ZP_07591507.1| signal recognition particle-docking protein FtsY [Escherichia coli W] gi|332282019|ref|ZP_08394432.1| cell division protein ftsY [Shigella sp. D9] gi|190900458|gb|EDV60275.1| cell division protein FtsY [Escherichia coli B7A] gi|192932549|gb|EDV85146.1| cell division protein FtsY [Escherichia coli E22] gi|218362783|emb|CAR00409.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein ; conserved hypothetical protein [Escherichia coli IAI1] gi|257761395|dbj|BAI32892.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein FtsY [Escherichia coli O103:H2 str. 12009] gi|300400894|gb|EFJ84432.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 84-1] gi|300417188|gb|EFK00499.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 182-1] gi|300838780|gb|EFK66540.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 124-1] gi|306908013|gb|EFN38513.1| signal recognition particle-docking protein FtsY [Escherichia coli W] gi|315062743|gb|ADT77070.1| fused signal recognition particle (SRP) receptor: membrane binding protein/conserved protein [Escherichia coli W] gi|315256062|gb|EFU36030.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 85-1] gi|320199641|gb|EFW74231.1| cell division protein FtsY [Escherichia coli EC4100B] gi|323376669|gb|ADX48937.1| signal recognition particle-docking protein FtsY [Escherichia coli KO11] gi|332104371|gb|EGJ07717.1| cell division protein ftsY [Shigella sp. D9] Length = 497 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 254 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 255 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 313 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 314 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 433 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 434 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488 >gi|331679532|ref|ZP_08380202.1| cell division protein FtsY [Escherichia coli H591] gi|331072704|gb|EGI44029.1| cell division protein FtsY [Escherichia coli H591] Length = 527 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 225 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 284 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 285 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 343 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 344 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 403 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 404 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 463 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 464 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 518 >gi|293453769|ref|ZP_06664188.1| cell division protein FtsY [Escherichia coli B088] gi|300815331|ref|ZP_07095556.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 107-1] gi|309794744|ref|ZP_07689166.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 145-7] gi|331670290|ref|ZP_08371129.1| cell division protein FtsY [Escherichia coli TA271] gi|291321895|gb|EFE61326.1| cell division protein FtsY [Escherichia coli B088] gi|300532223|gb|EFK53285.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 107-1] gi|308121794|gb|EFO59056.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 145-7] gi|331062352|gb|EGI34272.1| cell division protein FtsY [Escherichia coli TA271] Length = 498 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|326802525|ref|YP_004320344.1| signal recognition particle-docking protein FtsY [Sphingobacterium sp. 21] gi|326553289|gb|ADZ81674.1| signal recognition particle-docking protein FtsY [Sphingobacterium sp. 21] Length = 320 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 132/296 (44%), Positives = 190/296 (64%), Gaps = 7/296 (2%) Query: 17 LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG T IT ++ +D+ V ++LE++L+ SD+GV KI+E + R Sbjct: 20 LDKGLEKTKEGFFTKITKAVVGKSTVDEEVLDDLEEVLVTSDVGVTTTLKIIERI-EDRV 78 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPL-SKPF-NWDF-SHRPHVILVVGVNGVGKTTVIGK 130 A+D ++ + + E I ++L S F N+++ +H+P+VI+VVGVNGVGKTT IGK Sbjct: 79 ARDKYINTSELNGILREEIQELLAENNSNDFENFEYGNHKPYVIMVVGVNGVGKTTTIGK 138 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K+ AG KV+L A DTFR+AA+DQ+K+W +R V +GSD A++A++ + A Sbjct: 139 LAHKLKQAGNKVVLGAADTFRAAAVDQIKLWGERVGVRVVAQAMGSDPASVAFDTIQSAV 198 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A + DV IIDTAGRLHN LM + K+ V+K++ P APH +L VLDA+TGQNA+ Q + Sbjct: 199 ANQEDVAIIDTAGRLHNKLALMNELTKIKNVMKKVVPGAPHEILLVLDASTGQNAIEQCK 258 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F L +TK+DGTA+GG +I I KIPV ++GVGEGINDL+ F K+F Sbjct: 259 QFTQATDVNALALTKLDGTAKGGVVIGISDQFKIPVKYIGVGEGINDLQLFNKKEF 314 >gi|331655047|ref|ZP_08356046.1| cell division protein FtsY [Escherichia coli M718] gi|331047062|gb|EGI19140.1| cell division protein FtsY [Escherichia coli M718] Length = 498 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|293416868|ref|ZP_06659505.1| cell division protein FtsY [Escherichia coli B185] gi|291431444|gb|EFF04429.1| cell division protein FtsY [Escherichia coli B185] Length = 498 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|157162941|ref|YP_001460259.1| cell division protein FtsY [Escherichia coli HS] gi|170018304|ref|YP_001723258.1| cell division protein FtsY [Escherichia coli ATCC 8739] gi|157068621|gb|ABV07876.1| cell division protein FtsY [Escherichia coli HS] gi|169753232|gb|ACA75931.1| signal recognition particle-docking protein FtsY [Escherichia coli ATCC 8739] gi|323939318|gb|EGB35529.1| signal recognition particle-docking protein FtsY [Escherichia coli E482] Length = 498 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|226939167|ref|YP_002794238.1| FtsY [Laribacter hongkongensis HLHK9] gi|226714091|gb|ACO73229.1| FtsY [Laribacter hongkongensis HLHK9] Length = 400 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 130/307 (42%), Positives = 191/307 (62%), Gaps = 3/307 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 ++++ A SW +L G + T KL + + + ++D+ + +ELE +L+ SD+GV Sbjct: 90 VASEAAAPRKQSWSERLKAGLSKTRDKLGKQLAGLFGGGQIDEDLYDELETILLTSDMGV 149 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 A + ++E++ + K + L D + E + ++ PL KP N D S P VI++ GV Sbjct: 150 AATRHLLEDVRRRVSLKGLKDASQLKDALKESLMDLIGPLEKPLNLDRSG-PLVIMMAGV 208 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NG GKTT IGKL+K V+LAAGDTFR+AA +QL W R V S+ G DAA Sbjct: 209 NGAGKTTSIGKLAKYFQGHRKSVLLAAGDTFRAAAREQLAEWGARNQVT-VISQQGGDAA 267 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ ++A + AQA+K+D+++ DTAGRL LM I K+ RV+ + P APH +L VLDA Sbjct: 268 AVCFDAVQAAQARKIDIVLADTAGRLPTQLHLMEEIRKVKRVISKALPQAPHEILLVLDA 327 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQNAL QV+ F G TGLI+TK+DGTA+GG + I +P+YF+GVGE ++DL Sbjct: 328 NTGQNALAQVKAFDDALGLTGLILTKLDGTAKGGVIAAIARERPVPMYFVGVGETLDDLR 387 Query: 300 PFVAKDF 306 PF A+++ Sbjct: 388 PFSAREY 394 >gi|188492944|ref|ZP_03000214.1| cell division protein FtsY [Escherichia coli 53638] gi|194435805|ref|ZP_03067908.1| cell division protein FtsY [Escherichia coli 101-1] gi|254163388|ref|YP_003046496.1| cell division protein FtsY [Escherichia coli B str. REL606] gi|300930995|ref|ZP_07146353.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 187-1] gi|188488143|gb|EDU63246.1| cell division protein FtsY [Escherichia coli 53638] gi|194425348|gb|EDX41332.1| cell division protein FtsY [Escherichia coli 101-1] gi|242378985|emb|CAQ33783.1| SRP receptor, subunit of Signal Recognition Particle Protein Translocation System [Escherichia coli BL21(DE3)] gi|253975289|gb|ACT40960.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved hypothetical protein [Escherichia coli B str. REL606] gi|253979445|gb|ACT45115.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein [Escherichia coli BL21(DE3)] gi|300461173|gb|EFK24666.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 187-1] gi|323959684|gb|EGB55335.1| signal recognition particle-docking protein FtsY [Escherichia coli H489] gi|323970062|gb|EGB65337.1| signal recognition particle-docking protein FtsY [Escherichia coli TA007] Length = 498 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|218702209|ref|YP_002409838.1| cell division protein FtsY [Escherichia coli IAI39] gi|218372195|emb|CAR20057.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein ; conserved hypothetical protein [Escherichia coli IAI39] Length = 495 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 193 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 252 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 253 GATRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 311 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 312 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 371 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 372 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 431 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 432 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 486 >gi|193068822|ref|ZP_03049782.1| cell division protein FtsY [Escherichia coli E110019] gi|260857570|ref|YP_003231461.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein FtsY [Escherichia coli O26:H11 str. 11368] gi|260870189|ref|YP_003236591.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein/hypothetical protein FtsY [Escherichia coli O111:H- str. 11128] gi|192957898|gb|EDV88341.1| cell division protein FtsY [Escherichia coli E110019] gi|257756219|dbj|BAI27721.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein FtsY [Escherichia coli O26:H11 str. 11368] gi|257766545|dbj|BAI38040.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein FtsY [Escherichia coli O111:H- str. 11128] gi|323179009|gb|EFZ64583.1| signal recognition particle-docking protein FtsY [Escherichia coli 1180] Length = 498 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|324009352|gb|EGB78571.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 57-2] Length = 498 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|281602812|gb|ADA75796.1| Cell division membrane protein [Shigella flexneri 2002017] gi|332749436|gb|EGJ79853.1| signal recognition particle-docking protein FtsY [Shigella flexneri K-671] Length = 498 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-DKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|229525040|ref|ZP_04414445.1| signal recognition particle receptor protein FtsY [Vibrio cholerae bv. albensis VL426] gi|229338621|gb|EEO03638.1| signal recognition particle receptor protein FtsY [Vibrio cholerae bv. albensis VL426] Length = 401 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 121/296 (40%), Positives = 191/296 (64%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ I+ L Sbjct: 97 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSNIIANLT 156 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + + LY + E + ++L + +P + +P+VIL+VGVNGVGKTT IGK Sbjct: 157 AKASRQQLRDGEALYGLLKEEMAEILAQVEQPLVIETEKKPYVILMVGVNGVGKTTTIGK 216 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+ Sbjct: 217 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 276 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 277 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 336 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGE I+DL PF ++F Sbjct: 337 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 392 >gi|170682136|ref|YP_001745713.1| cell division protein FtsY [Escherichia coli SMS-3-5] gi|170519854|gb|ACB18032.1| cell division protein FtsY [Escherichia coli SMS-3-5] Length = 512 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 210 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 269 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 270 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 328 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 329 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 388 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 389 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 448 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 449 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 503 >gi|170766837|ref|ZP_02901290.1| cell division protein FtsY [Escherichia albertii TW07627] gi|170124275|gb|EDS93206.1| cell division protein FtsY [Escherichia albertii TW07627] Length = 504 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 202 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 261 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 262 GATRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKAPFVILMVGVNGVGKTTTIGKL 320 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 321 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 380 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 381 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 440 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 441 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 495 >gi|300822730|ref|ZP_07102867.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 119-7] gi|300524730|gb|EFK45799.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 119-7] Length = 498 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|320175705|gb|EFW50793.1| cell division protein FtsY [Shigella dysenteriae CDC 74-1112] Length = 500 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 188/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 198 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 257 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + VLY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 258 GASRKQLRDAEVLYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 316 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 317 ARQFELQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 376 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 377 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 436 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 437 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 491 >gi|301018551|ref|ZP_07182929.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 69-1] gi|300399670|gb|EFJ83208.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 69-1] Length = 498 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|110643704|ref|YP_671434.1| cell division protein FtsY [Escherichia coli 536] gi|191170595|ref|ZP_03032148.1| cell division protein FtsY [Escherichia coli F11] gi|300987363|ref|ZP_07178171.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 200-1] gi|110345296|gb|ABG71533.1| cell division protein FtsY [Escherichia coli 536] gi|190909403|gb|EDV68989.1| cell division protein FtsY [Escherichia coli F11] gi|300306231|gb|EFJ60751.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 200-1] gi|324014562|gb|EGB83781.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 60-1] Length = 498 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|254038632|ref|ZP_04872688.1| cell division protein FtsY [Escherichia sp. 1_1_43] gi|226839138|gb|EEH71161.1| cell division protein FtsY [Escherichia sp. 1_1_43] gi|309703870|emb|CBJ03211.1| cell division protein [Escherichia coli ETEC H10407] Length = 498 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|167627247|ref|YP_001677747.1| signal recognition particle-docking protein FtsY [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597248|gb|ABZ87246.1| signal recognition particle-docking protein FtsY [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 333 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/297 (41%), Positives = 198/297 (66%), Gaps = 2/297 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +L G + T+ K G++ I+ +++ DD + E++E L+ SD+GV +IVE L K Sbjct: 30 RLQSGLSKTASKFGSGLSTILMGQKVVDDELLEDIEMQLLTSDVGVEATDEIVEYLRGKV 89 Query: 75 YAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 ++ +V ++ + + + ++++P KP + + P+VIL+VGVNGVGKTT IGKL+K Sbjct: 90 ARNELQTVDKLNEIIQDKLTEIILPCQKPLQINHENTPYVILIVGVNGVGKTTTIGKLTK 149 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 K+ G V+LAAGDTFR+AA++QL+ W DR + V + G+D+A++ Y+A A+++ Sbjct: 150 KLQSEGKSVILAAGDTFRAAAVEQLREWGDRNNTQVVYQKEGADSASVIYDAISSAKSRG 209 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +DV+I DTAGRLHN LM + K+++V+K++D APH + V+DATTG NAL Q E F+ Sbjct: 210 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKVDDSAPHETMLVVDATTGGNALSQAEAFN 269 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 + TG+ +TK+DGTA+GG + I +P+ F+GVGE I+DL+ F AK+F+ + Sbjct: 270 EIVNLTGITITKLDGTAKGGIVFSIAKKMGLPLRFIGVGEKIDDLQVFNAKNFTKAL 326 >gi|331665073|ref|ZP_08365974.1| cell division protein FtsY [Escherichia coli TA143] gi|331057583|gb|EGI29569.1| cell division protein FtsY [Escherichia coli TA143] Length = 498 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|167468884|ref|ZP_02333588.1| cell division protein [Yersinia pestis FV-1] Length = 589 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 287 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 346 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + KP + P+VIL+VGVNGVGKTT IGKL Sbjct: 347 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 405 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + A+A Sbjct: 406 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 465 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 466 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 525 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL PF A +F Sbjct: 526 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 580 >gi|333012439|gb|EGK31820.1| signal recognition particle-docking protein FtsY [Shigella flexneri K-304] Length = 516 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 214 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 273 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 274 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-DKTPFVILMVGVNGVGKTTTIGKL 332 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 333 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 392 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 393 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 452 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 453 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 507 >gi|325499013|gb|EGC96872.1| cell division protein FtsY [Escherichia fergusonii ECD227] Length = 512 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 210 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 269 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 270 GATRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 328 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 329 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 388 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 389 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 448 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 449 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 503 >gi|331685110|ref|ZP_08385696.1| cell division protein FtsY [Escherichia coli H299] gi|331077481|gb|EGI48693.1| cell division protein FtsY [Escherichia coli H299] Length = 498 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|218550726|ref|YP_002384517.1| cell division protein FtsY [Escherichia fergusonii ATCC 35469] gi|218358267|emb|CAQ90914.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein ; conserved hypothetical protein [Escherichia fergusonii ATCC 35469] Length = 512 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 210 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 269 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 270 GATRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 328 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 329 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 388 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 389 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 448 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 449 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 503 >gi|197249122|ref|YP_002148494.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197212825|gb|ACH50222.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 491 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482 >gi|323974895|gb|EGB70006.1| signal recognition particle-docking protein FtsY [Escherichia coli TW10509] Length = 512 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 210 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 269 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 270 GATRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 328 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 329 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 388 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 389 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 448 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 449 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 503 >gi|82778728|ref|YP_405077.1| cell division protein FtsY [Shigella dysenteriae Sd197] gi|309785785|ref|ZP_07680416.1| signal recognition particle-docking protein FtsY [Shigella dysenteriae 1617] gi|81242876|gb|ABB63586.1| cell division membrane protein [Shigella dysenteriae Sd197] gi|308926905|gb|EFP72381.1| signal recognition particle-docking protein FtsY [Shigella dysenteriae 1617] Length = 498 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKAPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|16131336|ref|NP_417921.1| Signal Recognition Particle (SRP) receptor [Escherichia coli str. K-12 substr. MG1655] gi|89110548|ref|AP_004328.1| fused Signal Recognition Particle (SRP) receptor [Escherichia coli str. K-12 substr. W3110] gi|170082978|ref|YP_001732298.1| fused Signal recognition particle (SRP) receptor: membrane binding protein; protein [Escherichia coli str. K-12 substr. DH10B] gi|238902555|ref|YP_002928351.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein/hypothetical protein [Escherichia coli BW2952] gi|253771707|ref|YP_003034538.1| cell division protein FtsY [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|300946787|ref|ZP_07161031.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 116-1] gi|300956799|ref|ZP_07169066.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 175-1] gi|301021814|ref|ZP_07185778.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 196-1] gi|120576|sp|P10121|FTSY_ECOLI RecName: Full=Cell division protein ftsY gi|41498|emb|CAA27984.1| unnamed protein product [Escherichia coli K-12] gi|466600|gb|AAB18439.1| CG Site No. 18295 [Escherichia coli str. K-12 substr. MG1655] gi|1789874|gb|AAC76489.1| Signal Recognition Particle (SRP) receptor [Escherichia coli str. K-12 substr. MG1655] gi|85676579|dbj|BAE77829.1| fused Signal Recognition Particle (SRP) receptor [Escherichia coli str. K12 substr. W3110] gi|169890813|gb|ACB04520.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein; conserved protein [Escherichia coli str. K-12 substr. DH10B] gi|238861253|gb|ACR63251.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein [Escherichia coli BW2952] gi|253322751|gb|ACT27353.1| signal recognition particle-docking protein FtsY [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260447520|gb|ACX37942.1| signal recognition particle-docking protein FtsY [Escherichia coli DH1] gi|299881447|gb|EFI89658.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 196-1] gi|300316438|gb|EFJ66222.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 175-1] gi|300453544|gb|EFK17164.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 116-1] gi|315138038|dbj|BAJ45197.1| cell division protein FtsY [Escherichia coli DH1] Length = 497 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 254 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 255 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKAPFVILMVGVNGVGKTTTIGKL 313 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 314 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 433 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 434 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488 >gi|300917202|ref|ZP_07133884.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 115-1] gi|300415541|gb|EFJ98851.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 115-1] Length = 497 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 254 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 255 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 313 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 314 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 433 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 434 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488 >gi|262363544|gb|ACY60265.1| cell division protein [Yersinia pestis D106004] Length = 544 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 242 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 301 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + KP + P+VIL+VGVNGVGKTT IGKL Sbjct: 302 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 360 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + A+A Sbjct: 361 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 420 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 421 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 480 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL PF A +F Sbjct: 481 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 535 >gi|229900065|ref|ZP_04515202.1| membrane-binding signal recognition particle (SRP) receptor [Yersinia pestis biovar Orientalis str. India 195] gi|229686845|gb|EEO78924.1| membrane-binding signal recognition particle (SRP) receptor [Yersinia pestis biovar Orientalis str. India 195] Length = 556 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 254 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 313 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + KP + P+VIL+VGVNGVGKTT IGKL Sbjct: 314 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 372 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + A+A Sbjct: 373 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 432 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 433 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 492 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL PF A +F Sbjct: 493 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 547 >gi|167401838|ref|ZP_02307326.1| cell division protein FtsY [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167048731|gb|EDR60139.1| cell division protein FtsY [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 562 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 260 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 319 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + KP + P+VIL+VGVNGVGKTT IGKL Sbjct: 320 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 378 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + A+A Sbjct: 379 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 438 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 439 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 498 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL PF A +F Sbjct: 499 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 553 >gi|167420847|ref|ZP_02312600.1| cell division protein FtsY [Yersinia pestis biovar Orientalis str. MG05-1020] gi|166960976|gb|EDR56997.1| cell division protein FtsY [Yersinia pestis biovar Orientalis str. MG05-1020] gi|320013587|gb|ADV97158.1| membrane-binding signal recognition particle (SRP) receptor [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 550 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 248 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 307 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + KP + P+VIL+VGVNGVGKTT IGKL Sbjct: 308 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 366 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + A+A Sbjct: 367 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 426 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 427 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 486 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL PF A +F Sbjct: 487 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 541 >gi|165926241|ref|ZP_02222073.1| cell division protein FtsY [Yersinia pestis biovar Orientalis str. F1991016] gi|165921765|gb|EDR38962.1| cell division protein FtsY [Yersinia pestis biovar Orientalis str. F1991016] Length = 568 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 266 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 325 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + KP + P+VIL+VGVNGVGKTT IGKL Sbjct: 326 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 384 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + A+A Sbjct: 385 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 444 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 445 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 504 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL PF A +F Sbjct: 505 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 559 >gi|145600681|ref|YP_001164757.1| cell division protein [Yersinia pestis Pestoides F] gi|153997129|ref|ZP_02022262.1| cell division protein [Yersinia pestis CA88-4125] gi|145212377|gb|ABP41784.1| signal recognition particle-docking protein FtsY [Yersinia pestis Pestoides F] gi|149289435|gb|EDM39513.1| cell division protein [Yersinia pestis CA88-4125] Length = 559 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 257 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 316 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + KP + P+VIL+VGVNGVGKTT IGKL Sbjct: 317 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 375 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + A+A Sbjct: 376 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 435 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 436 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 495 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL PF A +F Sbjct: 496 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 550 >gi|108810316|ref|YP_646083.1| cell division protein [Yersinia pestis Nepal516] gi|229900489|ref|ZP_04515618.1| membrane-binding signal recognition particle (SRP) receptor [Yersinia pestis Nepal516] gi|108773964|gb|ABG16483.1| signal recognition particle-docking protein FtsY [Yersinia pestis Nepal516] gi|229682508|gb|EEO78595.1| membrane-binding signal recognition particle (SRP) receptor [Yersinia pestis Nepal516] Length = 535 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 233 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 292 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + KP + P+VIL+VGVNGVGKTT IGKL Sbjct: 293 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 351 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + A+A Sbjct: 352 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 411 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 412 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 471 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL PF A +F Sbjct: 472 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 526 >gi|45442987|ref|NP_994526.1| cell division protein [Yersinia pestis biovar Microtus str. 91001] gi|45437854|gb|AAS63403.1| cell division protein [Yersinia pestis biovar Microtus str. 91001] Length = 547 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 245 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 304 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + KP + P+VIL+VGVNGVGKTT IGKL Sbjct: 305 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 363 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + A+A Sbjct: 364 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 423 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 424 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 483 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL PF A +F Sbjct: 484 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 538 >gi|218930816|ref|YP_002348691.1| cell division protein [Yersinia pestis CO92] gi|229837142|ref|ZP_04457307.1| membrane-binding signal recognition particle (SRP) receptor [Yersinia pestis Pestoides A] gi|229839502|ref|ZP_04459661.1| membrane-binding signal recognition particle (SRP) receptor [Yersinia pestis biovar Orientalis str. PEXU2] gi|115349427|emb|CAL22400.1| cell division protein [Yersinia pestis CO92] gi|229695868|gb|EEO85915.1| membrane-binding signal recognition particle (SRP) receptor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706085|gb|EEO92094.1| membrane-binding signal recognition particle (SRP) receptor [Yersinia pestis Pestoides A] Length = 541 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 239 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 298 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + KP + P+VIL+VGVNGVGKTT IGKL Sbjct: 299 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 357 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + A+A Sbjct: 358 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 417 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 418 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 477 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL PF A +F Sbjct: 478 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 532 >gi|108806206|ref|YP_650122.1| cell division protein [Yersinia pestis Antiqua] gi|165939137|ref|ZP_02227688.1| cell division protein FtsY [Yersinia pestis biovar Orientalis str. IP275] gi|166011666|ref|ZP_02232564.1| cell division protein FtsY [Yersinia pestis biovar Antiqua str. E1979001] gi|166213536|ref|ZP_02239571.1| cell division protein FtsY [Yersinia pestis biovar Antiqua str. B42003004] gi|108778119|gb|ABG12177.1| signal recognition particle-docking protein FtsY [Yersinia pestis Antiqua] gi|165912910|gb|EDR31536.1| cell division protein FtsY [Yersinia pestis biovar Orientalis str. IP275] gi|165989435|gb|EDR41736.1| cell division protein FtsY [Yersinia pestis biovar Antiqua str. E1979001] gi|166205209|gb|EDR49689.1| cell division protein FtsY [Yersinia pestis biovar Antiqua str. B42003004] gi|262367473|gb|ACY64030.1| cell division protein [Yersinia pestis D182038] Length = 538 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 236 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 295 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + KP + P+VIL+VGVNGVGKTT IGKL Sbjct: 296 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 354 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + A+A Sbjct: 355 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 414 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 415 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 474 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL PF A +F Sbjct: 475 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 529 >gi|22124331|ref|NP_667754.1| cell division protein [Yersinia pestis KIM 10] gi|162420030|ref|YP_001605168.1| cell division protein [Yersinia pestis Angola] gi|167426293|ref|ZP_02318046.1| cell division protein FtsY [Yersinia pestis biovar Mediaevalis str. K1973002] gi|294505479|ref|YP_003569541.1| cell division membrane protein [Yersinia pestis Z176003] gi|21957106|gb|AAM84005.1|AE013642_6 cell division membrane protein [Yersinia pestis KIM 10] gi|162352845|gb|ABX86793.1| cell division protein FtsY [Yersinia pestis Angola] gi|167054812|gb|EDR64616.1| cell division protein FtsY [Yersinia pestis biovar Mediaevalis str. K1973002] gi|294355938|gb|ADE66279.1| cell division membrane protein [Yersinia pestis Z176003] Length = 553 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 251 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 310 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + KP + P+VIL+VGVNGVGKTT IGKL Sbjct: 311 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 369 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + A+A Sbjct: 370 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 429 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 430 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 489 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL PF A +F Sbjct: 490 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 544 >gi|332996587|gb|EGK16212.1| signal recognition particle-docking protein FtsY [Shigella flexneri K-272] gi|333012995|gb|EGK32371.1| signal recognition particle-docking protein FtsY [Shigella flexneri K-227] Length = 497 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 254 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 255 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-DKTPFVILMVGVNGVGKTTTIGKL 313 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 314 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 433 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 434 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488 >gi|332996251|gb|EGK15878.1| signal recognition particle-docking protein FtsY [Shigella flexneri VA-6] Length = 498 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-DKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|300936475|ref|ZP_07151395.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 21-1] gi|300458397|gb|EFK21890.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 21-1] Length = 504 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 202 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 261 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 262 GATRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKAPFVILMVGVNGVGKTTTIGKL 320 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 321 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 380 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 381 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 440 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 441 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 495 >gi|238750712|ref|ZP_04612211.1| Cell division protein ftsY [Yersinia rohdei ATCC 43380] gi|238711102|gb|EEQ03321.1| Cell division protein ftsY [Yersinia rohdei ATCC 43380] Length = 555 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 130/300 (43%), Positives = 192/300 (64%), Gaps = 12/300 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 253 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 312 Query: 73 KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126 K + LY ++SE++ K+ PL D S + P+VIL+VGVNGVGKTT Sbjct: 313 HASRKQLKDAEALYGKLKEEMSEILSKVDKPL------DVSGKNPYVILMVGVNGVGKTT 366 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A Sbjct: 367 TIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAI 426 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+A+ VDVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Sbjct: 427 QAAKARGVDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAV 486 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF A DF Sbjct: 487 SQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFKADDF 546 >gi|323164793|gb|EFZ50585.1| signal recognition particle-docking protein FtsY [Shigella sonnei 53G] Length = 454 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 152 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 211 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 212 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 270 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 271 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 330 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 331 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 390 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 391 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 445 >gi|323154303|gb|EFZ40506.1| signal recognition particle-docking protein FtsY [Escherichia coli EPECa14] Length = 527 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 225 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 284 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 285 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 343 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 344 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 403 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 404 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 463 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 464 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 518 >gi|218707058|ref|YP_002414577.1| cell division protein FtsY [Escherichia coli UMN026] gi|293407045|ref|ZP_06650969.1| cell division protein FtsY [Escherichia coli FVEC1412] gi|300898834|ref|ZP_07117138.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 198-1] gi|218434155|emb|CAR15072.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein ; conserved hypothetical protein [Escherichia coli UMN026] gi|284923454|emb|CBG36549.1| cell division protein [Escherichia coli 042] gi|291425856|gb|EFE98890.1| cell division protein FtsY [Escherichia coli FVEC1412] gi|300357519|gb|EFJ73389.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 198-1] Length = 498 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|26250079|ref|NP_756119.1| cell division protein FtsY [Escherichia coli CFT073] gi|227883610|ref|ZP_04001415.1| cell division protein FtsY [Escherichia coli 83972] gi|300985244|ref|ZP_07177341.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 45-1] gi|301050311|ref|ZP_07197200.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 185-1] gi|26110508|gb|AAN82693.1|AE016768_111 Cell division protein ftsY [Escherichia coli CFT073] gi|227839489|gb|EEJ49955.1| cell division protein FtsY [Escherichia coli 83972] gi|300297940|gb|EFJ54325.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 185-1] gi|300408115|gb|EFJ91653.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 45-1] gi|307555558|gb|ADN48333.1| cell division protein FtsY [Escherichia coli ABU 83972] gi|315291681|gb|EFU51037.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 153-1] Length = 498 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|238784416|ref|ZP_04628426.1| Cell division protein ftsY [Yersinia bercovieri ATCC 43970] gi|238714708|gb|EEQ06710.1| Cell division protein ftsY [Yersinia bercovieri ATCC 43970] Length = 519 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 126/295 (42%), Positives = 188/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 217 FFARLKRSLLKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 276 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + KP + P VIL+VGVNGVGKTT IGKL Sbjct: 277 HASRKQLKDAEALYGKLKEEMSEILSTVDKPLDVS-GKNPFVILMVGVNGVGKTTTIGKL 335 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + A+A Sbjct: 336 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 395 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 396 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 455 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF A DF Sbjct: 456 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFKADDF 510 >gi|238798003|ref|ZP_04641492.1| Cell division protein ftsY [Yersinia mollaretii ATCC 43969] gi|238718106|gb|EEQ09933.1| Cell division protein ftsY [Yersinia mollaretii ATCC 43969] Length = 534 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 126/295 (42%), Positives = 188/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 232 FFARLKRSLLKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 291 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + KP + P VIL+VGVNGVGKTT IGKL Sbjct: 292 HASRKQLKDAEALYGKLKEEMSEILSTVDKPLDVS-GKNPFVILMVGVNGVGKTTTIGKL 350 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + A+A Sbjct: 351 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 410 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 411 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 470 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF A DF Sbjct: 471 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFKADDF 525 >gi|315295966|gb|EFU55275.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 16-3] Length = 498 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|298382791|ref|ZP_06992386.1| cell division protein FtsY [Escherichia coli FVEC1302] gi|298276627|gb|EFI18145.1| cell division protein FtsY [Escherichia coli FVEC1302] Length = 527 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 225 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 284 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 285 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 343 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 344 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 403 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 404 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 463 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 464 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 518 >gi|213621992|ref|ZP_03374775.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 479 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 177 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 236 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 237 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 295 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 296 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 355 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 356 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 415 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 416 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 470 >gi|24114724|ref|NP_709234.1| cell division protein FtsY [Shigella flexneri 2a str. 301] gi|30065259|ref|NP_839430.1| cell division protein FtsY [Shigella flexneri 2a str. 2457T] gi|24053940|gb|AAN44941.1| cell division membrane protein [Shigella flexneri 2a str. 301] gi|30043521|gb|AAP19241.1| cell division membrane protein [Shigella flexneri 2a str. 2457T] gi|313647237|gb|EFS11689.1| signal recognition particle-docking protein FtsY [Shigella flexneri 2a str. 2457T] gi|332750283|gb|EGJ80694.1| signal recognition particle-docking protein FtsY [Shigella flexneri 4343-70] Length = 498 Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-DKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|186893578|ref|YP_001870690.1| signal recognition particle-docking protein FtsY [Yersinia pseudotuberculosis PB1/+] gi|186696604|gb|ACC87233.1| signal recognition particle-docking protein FtsY [Yersinia pseudotuberculosis PB1/+] Length = 550 Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 248 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 307 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + KP + P+VIL+VGVNGVGKTT IGKL Sbjct: 308 HASRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 366 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + A+A Sbjct: 367 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 426 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 427 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 486 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL PF A +F Sbjct: 487 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 541 >gi|51594576|ref|YP_068767.1| cell division protein [Yersinia pseudotuberculosis IP 32953] gi|51587858|emb|CAH19461.1| cell division protein [Yersinia pseudotuberculosis IP 32953] Length = 574 Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 272 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 331 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + KP + P+VIL+VGVNGVGKTT IGKL Sbjct: 332 HASRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 390 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + A+A Sbjct: 391 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 450 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 451 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 510 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL PF A +F Sbjct: 511 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 565 >gi|323934550|gb|EGB30950.1| signal recognition particle-docking protein FtsY [Escherichia coli E1520] Length = 516 Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 214 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 273 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 274 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 332 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 333 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 392 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 393 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 452 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 453 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 507 >gi|74314064|ref|YP_312483.1| cell division protein FtsY [Shigella sonnei Ss046] gi|73857541|gb|AAZ90248.1| cell division membrane protein [Shigella sonnei Ss046] Length = 498 Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|330505416|ref|YP_004382285.1| signal recognition particle-docking protein FtsY [Pseudomonas mendocina NK-01] gi|328919702|gb|AEB60533.1| signal recognition particle-docking protein FtsY [Pseudomonas mendocina NK-01] Length = 443 Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 132/297 (44%), Positives = 197/297 (66%), Gaps = 4/297 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L +G + TS L EG+ + + + +DD + ++LE L+ +D+GV I+ L Sbjct: 137 FFARLKQGLSKTSASLGEGMASLFLGKKAIDDDLLDDLETRLLTADVGVEATTTIIGNL- 195 Query: 72 TKRYA-KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 TKR A K+++ LY + E + +L P+ +P D + +P+VILVVGVNGVGKTT IG Sbjct: 196 TKRVARKELADSGALYKALQEELVTLLKPVEQPLLIDSAKQPYVILVVGVNGVGKTTTIG 255 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+KK+ G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ ++A + A Sbjct: 256 KLAKKLQQDGKKVMLAAGDTFRAAAVEQLQVWGERNNIAVIAQHTGADSASVIFDAVQAA 315 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +++ VDVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q Sbjct: 316 KSRGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAISQA 375 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL PF A+ F Sbjct: 376 KQFNQTVNLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRPFEAQAF 432 >gi|270488845|ref|ZP_06205919.1| signal recognition particle-docking protein FtsY [Yersinia pestis KIM D27] gi|270337349|gb|EFA48126.1| signal recognition particle-docking protein FtsY [Yersinia pestis KIM D27] Length = 580 Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 278 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 337 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + KP + P+VIL+VGVNGVGKTT IGKL Sbjct: 338 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 396 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + A+A Sbjct: 397 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 456 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 457 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 516 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL PF A +F Sbjct: 517 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 571 >gi|238910428|ref|ZP_04654265.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 491 Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482 >gi|224585363|ref|YP_002639162.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469891|gb|ACN47721.1| cell division protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 491 Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482 >gi|78048306|ref|YP_364481.1| cell division protein FtsY [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036736|emb|CAJ24429.1| cell division protein FtsY [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 551 Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 120/264 (45%), Positives = 173/264 (65%), Gaps = 3/264 (1%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLM 97 +LDD + +E+E LI +D+G+ +++ L + +++ + L+ ++LI +L Sbjct: 273 KLDDDLLDEIETALITADVGIGATTALIDGLRKRMKSREFVDAQALFKALRADLIA-LLQ 331 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P+SKP D S +P V+L VGVNGVGKTT IGKL+K+ D G +MLAAGDTFR+AA+ Q Sbjct: 332 PVSKPLVIDRSLKPFVVLTVGVNGVGKTTTIGKLAKRFKDEGNSLMLAAGDTFRAAAVAQ 391 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ W DR + +DAA++A++A + A+A+ DVLI DTAGRLH + LM +GK Sbjct: 392 LQAWGDRNGVAVIAQGQNADAASVAFDALQAAKARGTDVLIADTAGRLHTQTGLMNELGK 451 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + RVL ++D APH VL V+D TTGQNA+ Q+ FHA G TGL++TK+DGTA+GG + Sbjct: 452 IRRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFA 511 Query: 278 IVVTHKIPVYFLGVGEGINDLEPF 301 + IP+ F G+GE DL F Sbjct: 512 LAREFNIPIRFAGIGERPEDLRVF 535 >gi|148358595|ref|YP_001249802.1| cell division membrane protein FtsY [Legionella pneumophila str. Corby] gi|148280368|gb|ABQ54456.1| cell division membrane protein FtsY [Legionella pneumophila str. Corby] Length = 355 Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 135/309 (43%), Positives = 189/309 (61%), Gaps = 3/309 (0%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63 K S S + KG + T +L EGI+ ++ + + + EELE LLI +D+G+ Sbjct: 41 KEPSPKESIFARFRKGLSKTRHQLGEGISRLLLGKKEISQELLEELETLLISADLGLDTT 100 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSH-RPHVILVVGVNG 121 Q ++++L K +S +Y + +L P KP + + P VIL+VGVNG Sbjct: 101 QDVLKQLNEGLARKQLSNGEAVYQTLKTNFATILSPEEKPLSIETEDGSPFVILMVGVNG 160 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+K+ G KVMLAAGDTFR+AA++QL +W +R + G+D+A++ Sbjct: 161 AGKTTTIGKLAKQFQKQGKKVMLAAGDTFRAAAVEQLHVWGERNGIPVIAQHTGADSASV 220 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+K+DVLI DTAGRLH S LM + K+ RV+++LDP APH + VLDA+ Sbjct: 221 IFDALQAAKARKIDVLIADTAGRLHTQSNLMEELKKVKRVMQKLDPKAPHETMLVLDASI 280 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL Q + FH TG+ MTK+DGTA+GG L I IP +LGVGEGI DL PF Sbjct: 281 GQNALAQAKQFHEAVQLTGITMTKLDGTAKGGILFAIANDLGIPFRYLGVGEGIEDLRPF 340 Query: 302 VAKDFSAVI 310 A F + I Sbjct: 341 DAAQFVSAI 349 >gi|324111785|gb|EGC05765.1| signal recognition particle-docking protein FtsY [Escherichia fergusonii B253] Length = 512 Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 210 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 269 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 270 GATRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 328 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 329 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 388 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 389 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 448 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 449 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 503 >gi|323966128|gb|EGB61565.1| signal recognition particle-docking protein FtsY [Escherichia coli M863] gi|327251100|gb|EGE62793.1| signal recognition particle-docking protein FtsY [Escherichia coli STEC_7v] Length = 512 Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 210 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 269 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 270 GATRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 328 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 329 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 388 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 389 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 448 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 449 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 503 >gi|283787901|ref|YP_003367766.1| cell division protein [Citrobacter rodentium ICC168] gi|282951355|emb|CBG91054.1| cell division protein [Citrobacter rodentium ICC168] Length = 494 Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/292 (42%), Positives = 185/292 (63%), Gaps = 2/292 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 195 RLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTEGAS 254 Query: 76 AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K + LY + + + ++L + +P N D P VIL+VGVNGVGKTT IGKL+++ Sbjct: 255 RKQLRDAEALYGLLKDEMSEILAKVDEPLNVD-GKTPFVILMVGVNGVGKTTTIGKLARQ 313 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A+ + Sbjct: 314 FEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNI 373 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q +FH Sbjct: 374 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEVMLTIDASTGQNAVSQARLFHE 433 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 434 AVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 485 >gi|170026190|ref|YP_001722695.1| signal recognition particle-docking protein FtsY [Yersinia pseudotuberculosis YPIII] gi|169752724|gb|ACA70242.1| signal recognition particle-docking protein FtsY [Yersinia pseudotuberculosis YPIII] Length = 523 Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 221 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 280 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + KP + P+VIL+VGVNGVGKTT IGKL Sbjct: 281 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 339 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ ++A + A+A Sbjct: 340 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 399 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++ Sbjct: 400 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 459 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL PF A +F Sbjct: 460 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 514 >gi|168241723|ref|ZP_02666655.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449622|ref|YP_002047596.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194407926|gb|ACF68145.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205338916|gb|EDZ25680.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 491 Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482 >gi|153214853|ref|ZP_01949661.1| signal recognition particle-docking protein FtsY [Vibrio cholerae 1587] gi|124115096|gb|EAY33916.1| signal recognition particle-docking protein FtsY [Vibrio cholerae 1587] Length = 383 Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 122/296 (41%), Positives = 191/296 (64%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 79 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 138 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + + LY + E + ++L + +P D + +VIL+VGVNGVGKTT IGK Sbjct: 139 AKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKTYVILMVGVNGVGKTTTIGK 198 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+ Sbjct: 199 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 258 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 259 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 318 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGE I+DL PF ++F Sbjct: 319 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 374 >gi|21243285|ref|NP_642867.1| cell division protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108823|gb|AAM37403.1| cell division protein [Xanthomonas axonopodis pv. citri str. 306] Length = 554 Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 119/263 (45%), Positives = 171/263 (65%), Gaps = 1/263 (0%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP 98 +LDD + +E+E LI +D+G+ +++ L + +++ V Q + + + +L P Sbjct: 276 KLDDDLLDEIETALITADVGIGATTALIDGLRKRMKSREFVDAQAMFKALRADLIALLQP 335 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +SKP D S +P V+L VGVNGVGKTT IGKL+K+ D G +MLAAGDTFR+AA+ QL Sbjct: 336 VSKPLVIDRSLKPFVVLTVGVNGVGKTTTIGKLAKRFKDEGNSLMLAAGDTFRAAAVAQL 395 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 + W DR + +DAA++A++A + A+A+ DVLI DTAGRLH + LM +GK+ Sbjct: 396 QAWGDRNGVAVIAQGQNADAASVAFDALQAAKARGTDVLIADTAGRLHTQTGLMNELGKI 455 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 RVL ++D APH VL V+D TTGQNA+ Q+ FHA G TGL++TK+DGTA+GG + + Sbjct: 456 RRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFAL 515 Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301 IP+ F G+GE DL F Sbjct: 516 AREFNIPIRFAGIGERPEDLRVF 538 >gi|156936373|ref|YP_001440289.1| cell division protein FtsY [Cronobacter sakazakii ATCC BAA-894] gi|156534627|gb|ABU79453.1| hypothetical protein ESA_04273 [Cronobacter sakazakii ATCC BAA-894] Length = 517 Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 188/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 215 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVDTTRKIIANLTE 274 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 275 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 333 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 334 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 393 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD +APH V+ +DA+TGQNA+ Q ++ Sbjct: 394 RGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDENAPHEVMLTIDASTGQNAVSQAKL 453 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 454 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDF 508 >gi|166711627|ref|ZP_02242834.1| cell division protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 553 Score = 236 bits (601), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 118/263 (44%), Positives = 171/263 (65%), Gaps = 1/263 (0%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP 98 +LDD + +E+E LI +D+G+ ++E L + +++ + Q + + + +L P Sbjct: 275 KLDDDLLDEIETALITADVGIGATTALIEGLRKRMKSREFIDAQAMFKALRADLIALLQP 334 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +SKP D + +P V+L VGVNGVGKTT IGKL+K+ D G +MLAAGDTFR+AA+ QL Sbjct: 335 VSKPLVIDRARKPFVVLTVGVNGVGKTTTIGKLAKRFKDEGNSLMLAAGDTFRAAAVAQL 394 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 + W DR + +DAA++A++A + A+A+ DVLI DTAGRLH + LM +GK+ Sbjct: 395 QAWGDRNGVAVIAQGQNADAASVAFDALQAAKARGTDVLIADTAGRLHTQTGLMNELGKI 454 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 RVL ++D APH VL V+D TTGQNA+ Q+ FHA G TGL++TK+DGTA+GG + + Sbjct: 455 RRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFAL 514 Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301 IP+ F G+GE DL F Sbjct: 515 AREFNIPIRFAGIGERPEDLRVF 537 >gi|294667547|ref|ZP_06732762.1| cell division protein FtsY [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602667|gb|EFF46103.1| cell division protein FtsY [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 497 Score = 236 bits (601), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 119/263 (45%), Positives = 171/263 (65%), Gaps = 1/263 (0%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP 98 +LDD + +E+E LI +D+G+ +++ L + +++ V Q + + + +L P Sbjct: 219 KLDDDLLDEIETALITADVGIGATTALIDGLRKRMKSREFVDAQAMFKALRADLIALLQP 278 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +SKP D S +P V+L VGVNGVGKTT IGKL+K+ D G +MLAAGDTFR+AA+ QL Sbjct: 279 VSKPLVIDRSLKPFVVLTVGVNGVGKTTTIGKLAKRFKDEGNSLMLAAGDTFRAAAVAQL 338 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 + W DR + +DAA++A++A + A+A+ DVLI DTAGRLH + LM +GK+ Sbjct: 339 QAWGDRNGVAVIAQGQNADAASVAFDALQAAKARGTDVLIADTAGRLHTQTGLMNELGKI 398 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 RVL ++D APH VL V+D TTGQNA+ Q+ FHA G TGL++TK+DGTA+GG + + Sbjct: 399 RRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFAL 458 Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301 IP+ F G+GE DL F Sbjct: 459 AREFNIPIRFAGIGERPEDLRVF 481 >gi|332345419|gb|AEE58753.1| signal recognition particle-docking protein FtsY [Escherichia coli UMNK88] Length = 498 Score = 236 bits (601), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|254876344|ref|ZP_05249054.1| signal recognition particle receptor ftsY [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842365|gb|EET20779.1| signal recognition particle receptor ftsY [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 334 Score = 236 bits (601), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 123/297 (41%), Positives = 196/297 (65%), Gaps = 2/297 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +L G + T+ K G++ I+ +++ DD + E++E L+ SD+GV +I+E L K Sbjct: 31 RLQSGLSKTASKFGSGLSTILMGQKVVDDELLEDIEMQLLTSDVGVEATDEIIEYLRGKV 90 Query: 75 YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 ++ L ++ + + ++++P KP + + P+VIL+VGVNGVGKTT IGKL+K Sbjct: 91 ARNELQTADKLNEIIQDKLTEIILPCQKPLQINHENTPYVILIVGVNGVGKTTTIGKLTK 150 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 K+ G V+LAAGDTFR+AA++QL+ W DR + V + G+D+A++ Y+A A+++ Sbjct: 151 KLQSEGKSVILAAGDTFRAAAVEQLREWGDRNNTQVVYQKEGADSASVIYDAISSAKSRG 210 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +DV+I DTAGRLHN LM + K+++V+K++D APH + V+DATTG NAL Q E F+ Sbjct: 211 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKVDDSAPHETMLVVDATTGGNALSQAEAFN 270 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 + TG+ +TK+DGTA+GG + I +P+ F+GVGE I+DL+ F AK+F+ + Sbjct: 271 EIVNLTGITITKLDGTAKGGIVFSIAKKMGLPLRFIGVGEKIDDLQVFNAKNFTKAL 327 >gi|168260700|ref|ZP_02682673.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465148|ref|ZP_02699040.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195632106|gb|EDX50590.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205350194|gb|EDZ36825.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 491 Score = 236 bits (601), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482 >gi|204928517|ref|ZP_03219716.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321950|gb|EDZ07148.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 491 Score = 236 bits (601), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482 >gi|168232718|ref|ZP_02657776.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194470486|ref|ZP_03076470.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194456850|gb|EDX45689.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333169|gb|EDZ19933.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 491 Score = 236 bits (601), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482 >gi|194442699|ref|YP_002042816.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401362|gb|ACF61584.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 491 Score = 236 bits (601), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482 >gi|16762733|ref|NP_458350.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144220|ref|NP_807562.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213053204|ref|ZP_03346082.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426831|ref|ZP_03359581.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213585937|ref|ZP_03367763.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650000|ref|ZP_03380053.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213859529|ref|ZP_03385233.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289829448|ref|ZP_06547060.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25300177|pir||AG0991 cell division protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505039|emb|CAD08059.1| cell division protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139857|gb|AAO71422.1| cell division protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 491 Score = 236 bits (601), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482 >gi|107099358|ref|ZP_01363276.1| hypothetical protein PaerPA_01000370 [Pseudomonas aeruginosa PACS2] Length = 454 Score = 236 bits (601), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 129/297 (43%), Positives = 189/297 (63%), Gaps = 4/297 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEELL 71 + +L +G + TS + EG+ + R+ D + + L+ +D+GV IV+ L Sbjct: 148 FFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL- 206 Query: 72 TKRYA-KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 TKR A K+++ LY + E + +L P+ +P D + P+VILVVGVNGVGKTT IG Sbjct: 207 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 266 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + A Sbjct: 267 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 326 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q Sbjct: 327 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 386 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A F Sbjct: 387 KQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAF 443 >gi|254237391|ref|ZP_04930714.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa C3719] gi|126169322|gb|EAZ54833.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa C3719] Length = 456 Score = 236 bits (601), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 129/297 (43%), Positives = 189/297 (63%), Gaps = 4/297 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEELL 71 + +L +G + TS + EG+ + R+ D + + L+ +D+GV IV+ L Sbjct: 150 FFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL- 208 Query: 72 TKRYA-KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 TKR A K+++ LY + E + +L P+ +P D + P+VILVVGVNGVGKTT IG Sbjct: 209 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 268 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + A Sbjct: 269 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 328 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q Sbjct: 329 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 388 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A F Sbjct: 389 KQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAF 445 >gi|332763553|gb|EGJ93792.1| signal recognition particle-docking protein FtsY [Shigella flexneri 2930-71] gi|332997161|gb|EGK16777.1| signal recognition particle-docking protein FtsY [Shigella flexneri K-218] Length = 516 Score = 236 bits (601), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 214 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 273 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 274 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-DKTPFVILMVGVNGVGKTTTIGKL 332 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 333 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 392 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 393 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 452 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 453 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 507 >gi|16766857|ref|NP_462472.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161616619|ref|YP_001590584.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167990787|ref|ZP_02571886.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197264581|ref|ZP_03164655.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200388762|ref|ZP_03215374.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|16422131|gb|AAL22431.1| GTPase domain of cell division membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161365983|gb|ABX69751.1| hypothetical protein SPAB_04436 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197242836|gb|EDY25456.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199605860|gb|EDZ04405.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205330664|gb|EDZ17428.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248724|emb|CBG26562.1| cell division protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995802|gb|ACY90687.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160110|emb|CBW19630.1| cell division protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914594|dbj|BAJ38568.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226620|gb|EFX51670.1| Signal recognition particle receptor protein FtsY [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131930|gb|ADX19360.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990422|gb|AEF09405.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 491 Score = 236 bits (601), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482 >gi|241667800|ref|ZP_04755378.1| signal recognition particle-docking protein FtsY [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 333 Score = 236 bits (601), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 123/297 (41%), Positives = 196/297 (65%), Gaps = 2/297 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +L G + T+ K G++ I+ +++ DD + E++E L+ SD+GV +I+E L K Sbjct: 30 RLQSGLSKTASKFGSGLSTILMGQKVVDDELLEDIEMQLLTSDVGVEATDEIIEYLRGKV 89 Query: 75 YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 ++ L ++ + + ++++P KP + + P+VIL+VGVNGVGKTT IGKL+K Sbjct: 90 ARNELQTADKLNEIIQDKLTEIILPCQKPLQINHENTPYVILIVGVNGVGKTTTIGKLTK 149 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 K+ G V+LAAGDTFR+AA++QL+ W DR + V + G+D+A++ Y+A A+++ Sbjct: 150 KLQSEGKSVILAAGDTFRAAAVEQLREWGDRNNTQVVYQKEGADSASVIYDAISSAKSRG 209 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +DV+I DTAGRLHN LM + K+++V+K++D APH + V+DATTG NAL Q E F+ Sbjct: 210 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKVDDSAPHETMLVVDATTGGNALSQAEAFN 269 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 + TG+ +TK+DGTA+GG + I +P+ F+GVGE I+DL+ F AK+F+ + Sbjct: 270 EIVNLTGITITKLDGTAKGGIVFSIAKKMGLPLRFIGVGEKIDDLQVFNAKNFTKAL 326 >gi|218889114|ref|YP_002437978.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa LESB58] gi|218769337|emb|CAW25097.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa LESB58] Length = 456 Score = 235 bits (600), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 129/297 (43%), Positives = 189/297 (63%), Gaps = 4/297 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEELL 71 + +L +G + TS + EG+ + R+ D + + L+ +D+GV IV+ L Sbjct: 150 FFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL- 208 Query: 72 TKRYA-KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 TKR A K+++ LY + E + +L P+ +P D + P+VILVVGVNGVGKTT IG Sbjct: 209 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 268 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + A Sbjct: 269 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 328 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q Sbjct: 329 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 388 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A F Sbjct: 389 KQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAF 445 >gi|157964925|ref|YP_001499749.1| Signal recognition particle-docking protein FtsY [Rickettsia massiliae MTU5] gi|157844701|gb|ABV85202.1| Signal recognition particle-docking protein FtsY [Rickettsia massiliae MTU5] Length = 303 Score = 235 bits (600), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 134/303 (44%), Positives = 193/303 (63%), Gaps = 3/303 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 +S KL + + TS K+ EGI I ++LD EELE+LLI SD+ V+V I+EEL Sbjct: 2 ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAETLEELEELLISSDMSVSVVTNIIEEL 61 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++ K++ V +++LI + L PF ++ +VILV GVNG GKTT IGK Sbjct: 62 KKVKFDKEIDNHTVKEALAKLIEQQLSKSEIPFTLS-KNKLNVILVCGVNGAGKTTTIGK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ S G KV +AA DTFR+AAI+QL WADR +A + E +D A++AY +++ Sbjct: 121 LAAMYSAQGKKVAVAACDTFRAAAINQLSTWADRANALLITGEESADPASVAYRGMEESI 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249 + +D+L IDTAGRLHN LM + K+++V+K+LD +AP HSVL V+DA TGQN QV Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVL-VIDAITGQNTYNQV 239 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F+ TGLI+TK+DG+A+ G ++ +V +P+YF+G+GE I DL+ F DF+ Sbjct: 240 EHFNDATNLTGLIVTKLDGSAKAGVIVRVVQKFNLPLYFIGIGEKIEDLKIFNRHDFARN 299 Query: 310 ITG 312 + G Sbjct: 300 LVG 302 >gi|311277611|ref|YP_003939842.1| signal recognition particle-docking protein FtsY [Enterobacter cloacae SCF1] gi|308746806|gb|ADO46558.1| signal recognition particle-docking protein FtsY [Enterobacter cloacae SCF1] Length = 475 Score = 235 bits (600), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 123/295 (41%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 173 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 232 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 233 GASRKQLRDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 291 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 292 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 351 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 352 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAISQAKL 411 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 412 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 466 >gi|168818612|ref|ZP_02830612.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205344537|gb|EDZ31301.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 491 Score = 235 bits (600), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482 >gi|167549211|ref|ZP_02342970.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205354811|ref|YP_002228612.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858809|ref|YP_002245460.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205274592|emb|CAR39642.1| cell division protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325845|gb|EDZ13684.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|206710612|emb|CAR34970.1| cell division protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326629955|gb|EGE36298.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 491 Score = 235 bits (600), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482 >gi|134299913|ref|YP_001113409.1| signal recognition particle-docking protein FtsY [Desulfotomaculum reducens MI-1] gi|134052613|gb|ABO50584.1| signal recognition particle-docking protein FtsY [Desulfotomaculum reducens MI-1] Length = 309 Score = 235 bits (600), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 134/304 (44%), Positives = 194/304 (63%), Gaps = 3/304 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L + T E I +++ R +D+ + EELE++LI++D+GV+ A K+VE Sbjct: 1 MGFFDRLKESLTKTRQSFIEKIDQVVTGRTGIDEDLYEELEEVLIQADVGVSTAMKLVER 60 Query: 70 LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + A++V L ++ E + ++ P + P VI+VVGVNGVGKTT I Sbjct: 61 VRKGVKARNVQEASRLKEIFQEELEYLMGEKITPIQLN-PEGPTVIMVVGVNGVGKTTTI 119 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GK++ + G KV+LAAGDTFR+AAIDQL+IWADR D + + GSD A+AY+A Sbjct: 120 GKMAHNFKEQGKKVLLAAGDTFRAAAIDQLEIWADRVGVDIIKHQEGSDPGAVAYDAVHA 179 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+++K D+L++DTAGRLHN S LM + K+ +++ R P APH VL VLDATTGQNAL Q Sbjct: 180 ARSRKADILLVDTAGRLHNKSNLMDELRKVHKIVAREMPGAPHEVLLVLDATTGQNALNQ 239 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 V++F TG+ +TK+DGTA+GG + IV IPV +G+GE ++DL PF KDF Sbjct: 240 VKIFSEAVNVTGIALTKLDGTAKGGVVTSIVTEMAIPVKLIGIGERMDDLRPFNPKDFIN 299 Query: 309 VITG 312 + G Sbjct: 300 ALYG 303 >gi|294626162|ref|ZP_06704768.1| cell division protein FtsY [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599514|gb|EFF43645.1| cell division protein FtsY [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 492 Score = 235 bits (600), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 119/263 (45%), Positives = 171/263 (65%), Gaps = 1/263 (0%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP 98 +LDD + +E+E LI +D+G+ +++ L + +++ V Q + + + +L P Sbjct: 214 KLDDDLLDEIETALITADVGIGATTALIDGLRKRMKSREFVDAQAMFKALRADLIALLQP 273 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +SKP D S +P V+L VGVNGVGKTT IGKL+K+ D G +MLAAGDTFR+AA+ QL Sbjct: 274 VSKPLVIDRSLKPFVVLTVGVNGVGKTTTIGKLAKRFKDEGNSLMLAAGDTFRAAAVAQL 333 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 + W DR + +DAA++A++A + A+A+ DVLI DTAGRLH + LM +GK+ Sbjct: 334 QAWGDRNGVAVIAQGQNADAASVAFDALQAAKARGTDVLIADTAGRLHTQTGLMNELGKI 393 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 RVL ++D APH VL V+D TTGQNA+ Q+ FHA G TGL++TK+DGTA+GG + + Sbjct: 394 RRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFAL 453 Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301 IP+ F G+GE DL F Sbjct: 454 AREFNIPIRFAGIGERPEDLRVF 476 >gi|294789648|ref|ZP_06754882.1| signal recognition particle-docking protein FtsY [Simonsiella muelleri ATCC 29453] gi|294482449|gb|EFG30142.1| signal recognition particle-docking protein FtsY [Simonsiella muelleri ATCC 29453] Length = 480 Score = 235 bits (600), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 130/313 (41%), Positives = 193/313 (61%), Gaps = 14/313 (4%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 M +++ S+ L W +L +G + ++ + + + ++D+ + EELE L+ SD+G+ Sbjct: 168 MPPEQIESDKLGWTARLKQGLTKSRNQMAKSLAGVFGGGKIDEDLYEELETTLLISDMGI 227 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHV 113 ++++ E+ K VS+ + L D +EL ++++L PL KP + +P V Sbjct: 228 EATEQLMNEV-----RKRVSL-KGLKDGNELRTTLKDALYELLKPLEKPLEIPNNGQPFV 281 Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 I++ G+NG GKTT IGKL+K G VMLAAGDTFR+AA +QL+ W R V S+ Sbjct: 282 IMMAGINGAGKTTSIGKLAKYFQAQGKSVMLAAGDTFRAAAREQLQEWGARNGV-TVISQ 340 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 D+AA+ ++A + A+AKK+DV++ DTAGRL LM I K+ RVL++ P APH V Sbjct: 341 ASGDSAAVCFDAVESAKAKKIDVVLADTAGRLPTQLHLMEEIKKVKRVLQKSMPDAPHEV 400 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 + VLDA GQNA+ QV F G TGLI+TK+DGTA+GG L + IPV ++GVGE Sbjct: 401 MVVLDANIGQNAINQVVAFDDALGVTGLIVTKLDGTAKGGVLAALASNRPIPVRYIGVGE 460 Query: 294 GINDLEPFVAKDF 306 GI+DL PF A+ F Sbjct: 461 GIDDLRPFDARAF 473 >gi|325053854|pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle (Srp) In Complex With Its Receptor(Sr) gi|325053856|pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle (Srp) In Complex With Its Receptor(Sr) Length = 302 Score = 235 bits (600), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 124/292 (42%), Positives = 186/292 (63%), Gaps = 2/292 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 3 RLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGAS 62 Query: 76 AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL+++ Sbjct: 63 RKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKAPFVILMVGVNGVGKTTTIGKLARQ 121 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A+ + Sbjct: 122 FEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNI 181 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++FH Sbjct: 182 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHE 241 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 242 AVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 293 >gi|296386871|ref|ZP_06876370.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa PAb1] Length = 453 Score = 235 bits (600), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 129/297 (43%), Positives = 189/297 (63%), Gaps = 4/297 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEELL 71 + +L +G + TS + EG+ + R+ D + + L+ +D+GV IV+ L Sbjct: 147 FFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL- 205 Query: 72 TKRYA-KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 TKR A K+++ LY + E + +L P+ +P D + P+VILVVGVNGVGKTT IG Sbjct: 206 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 265 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + A Sbjct: 266 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 325 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q Sbjct: 326 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 385 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A F Sbjct: 386 KQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAF 442 >gi|15595570|ref|NP_249064.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa PAO1] gi|9946225|gb|AAG03762.1|AE004475_4 signal recognition particle receptor FtsY [Pseudomonas aeruginosa PAO1] Length = 455 Score = 235 bits (600), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 129/297 (43%), Positives = 189/297 (63%), Gaps = 4/297 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEELL 71 + +L +G + TS + EG+ + R+ D + + L+ +D+GV IV+ L Sbjct: 149 FFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL- 207 Query: 72 TKRYA-KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 TKR A K+++ LY + E + +L P+ +P D + P+VILVVGVNGVGKTT IG Sbjct: 208 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 267 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + A Sbjct: 268 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 327 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q Sbjct: 328 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 387 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A F Sbjct: 388 KQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAF 444 >gi|116054103|ref|YP_788546.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa UCBPP-PA14] gi|115589324|gb|ABJ15339.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa UCBPP-PA14] Length = 451 Score = 235 bits (600), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 129/297 (43%), Positives = 189/297 (63%), Gaps = 4/297 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEELL 71 + +L +G + TS + EG+ + R+ D + + L+ +D+GV IV+ L Sbjct: 145 FFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL- 203 Query: 72 TKRYA-KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 TKR A K+++ LY + E + +L P+ +P D + P+VILVVGVNGVGKTT IG Sbjct: 204 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 263 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + A Sbjct: 264 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 323 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q Sbjct: 324 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 383 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A F Sbjct: 384 KQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAF 440 >gi|157368470|ref|YP_001476459.1| signal recognition particle-docking protein FtsY [Serratia proteamaculans 568] gi|157320234|gb|ABV39331.1| signal recognition particle-docking protein FtsY [Serratia proteamaculans 568] Length = 535 Score = 235 bits (600), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 123/295 (41%), Positives = 189/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 233 FFARLKRSLVKTKQNLGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTQ 292 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P + P+VIL+VGVNGVGKTT IGKL Sbjct: 293 HASRKQLKDAEALYGKLKEEMSEILAKVDQPLDVG-GKNPYVILMVGVNGVGKTTTIGKL 351 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + A+A Sbjct: 352 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAAKA 411 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ +LDA+TGQNA+ Q ++ Sbjct: 412 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDDQAPHEVMLILDASTGQNAVSQAKL 471 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF A DF Sbjct: 472 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFAIPIRYIGVGEGIEDLRPFKADDF 526 >gi|158430492|pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp Receptor Ftsy Length = 309 Score = 235 bits (599), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 124/292 (42%), Positives = 186/292 (63%), Gaps = 2/292 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 4 RLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGAS 63 Query: 76 AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL+++ Sbjct: 64 RKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKAPFVILMVGVNGVGKTTTIGKLARQ 122 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A+ + Sbjct: 123 FEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNI 182 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++FH Sbjct: 183 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHE 242 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 243 AVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 294 >gi|56415470|ref|YP_152545.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364399|ref|YP_002144036.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129727|gb|AAV79233.1| cell division protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095876|emb|CAR61450.1| cell division protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 491 Score = 235 bits (599), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKAGDF 482 >gi|51892595|ref|YP_075286.1| signal recognition particle [Symbiobacterium thermophilum IAM 14863] gi|51856284|dbj|BAD40442.1| signal recognition particle [Symbiobacterium thermophilum IAM 14863] Length = 320 Score = 235 bits (599), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 141/301 (46%), Positives = 199/301 (66%), Gaps = 8/301 (2%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +S+ +L G T L + ++S R++DD + +ELE+ LIR D+GVA + K+VEE Sbjct: 16 VSFFERLKAGLQKTKEALIGQVNTVMSVFRKIDDDLFDELEEALIRGDVGVATSAKLVEE 75 Query: 70 LLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 L +R A+ ++ +L + EL+ + L + P + VILVVGVNGVGKTT Sbjct: 76 L--RREARQKGLKNGDELLPLLKELVAERLGSGAAPLRLNEGGL-TVILVVGVNGVGKTT 132 Query: 127 VIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 IGKL++ + D GLKV+LAA DTFR+AA+DQLK+W +R A+ V G+D AA+A++ Sbjct: 133 TIGKLARHLREDRGLKVVLAAADTFRAAAMDQLKVWGERAGAEVVAGPEGADPAAVAFDG 192 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 K A+A DVLI+DTAGRLHN + LMA +GK+ RVL R P APH L VLDATTGQNA Sbjct: 193 VKAARASGADVLIVDTAGRLHNKAHLMAELGKIARVLGREVPGAPHETLLVLDATTGQNA 252 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 ++Q +F TG+ +TK+DGTA+GG ++ I T ++PV F+GVGE ++DL+PF + Sbjct: 253 IQQTRLFKETVPVTGIALTKLDGTAKGGVVVAIADTEQVPVKFIGVGERLDDLQPFDPRQ 312 Query: 306 F 306 F Sbjct: 313 F 313 >gi|322834886|ref|YP_004214913.1| signal recognition particle-docking protein FtsY [Rahnella sp. Y9602] gi|321170087|gb|ADW75786.1| signal recognition particle-docking protein FtsY [Rahnella sp. Y9602] Length = 493 Score = 235 bits (599), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 127/300 (42%), Positives = 190/300 (63%), Gaps = 12/300 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 191 FFARLKRSLVKTKQNLGSGFVGLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 250 Query: 73 KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126 K + LY ++SE++ K+ PL D S + P+VIL+VGVNGVGKTT Sbjct: 251 HASRKQLKDADALYGKLKEEMSEILAKVDEPL------DVSGKTPYVILMVGVNGVGKTT 304 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGK++++ G VMLAAGDTFR+AA++QL++W R + G+D+A++ ++A Sbjct: 305 TIGKMARQFEAQGKSVMLAAGDTFRAAAVEQLQVWGQRNKIPVIAQHTGADSASVIFDAI 364 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+A+ +DVLI DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Sbjct: 365 QAAKARNIDVLIADTAGRLQNKTHLMEELKKIVRVMKKLDEDAPHEVMLTLDASTGQNAV 424 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF A DF Sbjct: 425 SQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFKADDF 484 >gi|194427035|ref|ZP_03059587.1| cell division protein FtsY [Escherichia coli B171] gi|194414996|gb|EDX31266.1| cell division protein FtsY [Escherichia coli B171] Length = 497 Score = 235 bits (599), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 123/295 (41%), Positives = 186/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 254 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 255 DASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 313 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 314 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD PH V+ +DA+TGQNA+ Q ++ Sbjct: 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVETPHEVMLTIDASTGQNAVSQAKL 433 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 434 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488 >gi|152972338|ref|YP_001337484.1| cell division protein FtsY [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957187|gb|ABR79217.1| cell division membrane protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 507 Score = 235 bits (599), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 205 FFARLKRSLLKTKQNLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 264 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 265 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 323 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 324 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 383 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 384 RHVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVDAPHEVMLTIDASTGQNAISQAKL 443 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 444 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDF 498 >gi|152987106|ref|YP_001345863.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa PA7] gi|150962264|gb|ABR84289.1| cell division protein FtsY [Pseudomonas aeruginosa PA7] Length = 447 Score = 234 bits (598), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 129/297 (43%), Positives = 188/297 (63%), Gaps = 4/297 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEELL 71 + +L +G + TS + EG+ + R+ D + + L+ +D+GV IV+ L Sbjct: 141 FFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL- 199 Query: 72 TKRYA-KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 TKR A K+++ LY + E + +L P+ +P D + P+VILVVGVNGVGKTT IG Sbjct: 200 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 259 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + A Sbjct: 260 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 319 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q Sbjct: 320 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 379 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A F Sbjct: 380 RQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAF 436 >gi|238896927|ref|YP_002921672.1| cell division protein FtsY [Klebsiella pneumoniae NTUH-K2044] gi|238549254|dbj|BAH65605.1| cell division membrane protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 507 Score = 234 bits (598), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 205 FFARLKRSLLKTKQNLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 264 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 265 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 323 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 324 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 383 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 384 RHVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVDAPHEVMLTIDASTGQNAISQAKL 443 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 444 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDF 498 >gi|21231854|ref|NP_637771.1| cell division protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768019|ref|YP_242781.1| cell division protein [Xanthomonas campestris pv. campestris str. 8004] gi|188991144|ref|YP_001903154.1| Cell division protein FtsY [Xanthomonas campestris pv. campestris str. B100] gi|21113573|gb|AAM41695.1| cell division protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573351|gb|AAY48761.1| cell division protein [Xanthomonas campestris pv. campestris str. 8004] gi|167732904|emb|CAP51100.1| Cell division protein FtsY [Xanthomonas campestris pv. campestris] Length = 546 Score = 234 bits (598), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 121/268 (45%), Positives = 172/268 (64%), Gaps = 1/268 (0%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP 98 +LDD + +E+E LI +D+G+ +VE L + +++ V Q + + +L P Sbjct: 268 KLDDDLLDEIETALITADVGIGATTALVEGLRKRMKSREFVDAQAMFKAFRADLIALLQP 327 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +SKP D S +P V+L VGVNGVGKTT IGKL+K+ D G +MLAAGDTFR+AA+ QL Sbjct: 328 VSKPLVIDRSVKPFVVLTVGVNGVGKTTTIGKLAKRFKDDGHSLMLAAGDTFRAAAVAQL 387 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 + W DR + +DAA++A++A + A+A+ +VLI DTAGRLH + LM +GK+ Sbjct: 388 QAWGDRNGVAVIAQGQNADAASVAFDALQAAKARGTEVLIADTAGRLHTQTGLMNELGKI 447 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 RVL ++D APH VL V+D TTGQNA+ Q+ FHA G TGL++TK+DGTA+GG + + Sbjct: 448 RRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFAL 507 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDF 306 IP+ F G+GE DL F + F Sbjct: 508 AREFGIPIRFAGIGERPEDLRVFDPEAF 535 >gi|288942586|ref|YP_003444826.1| signal recognition particle-docking protein FtsY [Allochromatium vinosum DSM 180] gi|288897958|gb|ADC63794.1| signal recognition particle-docking protein FtsY [Allochromatium vinosum DSM 180] Length = 422 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 114/258 (44%), Positives = 167/258 (64%), Gaps = 1/258 (0%) Query: 56 SDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114 +D+G+ + +++ +L + K ++ + +L + E + +L + P +P V+ Sbjct: 165 ADVGIETSTRLIADLTARVKRKKITDPEALLAALKEDLRTILRAVDGPVKQPAPGKPQVV 224 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 L+VGVNG GKTT IGKL+K++ + G VMLAAGDTFR+AA++QL+ W +R V Sbjct: 225 LMVGVNGAGKTTTIGKLAKRLQEEGNSVMLAAGDTFRAAAVEQLETWGERNGVPVVAQHT 284 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 G+D+A++ ++A + A A+ DVLI DTAGRLH + LM + K+ RVLK+LDP APH V+ Sbjct: 285 GADSASVIFDALQAATARGADVLIADTAGRLHTKTNLMDELSKVARVLKKLDPEAPHEVM 344 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DATTGQNAL Q E FH G TG+ +TK+DGTA+GG L I ++P+ F+GVGE Sbjct: 345 LVVDATTGQNALNQAEHFHRAVGLTGITLTKLDGTAKGGILFAIAERLRVPIRFIGVGES 404 Query: 295 INDLEPFVAKDFSAVITG 312 I DL PF +F + G Sbjct: 405 IEDLRPFDPDEFVEALLG 422 >gi|262040530|ref|ZP_06013771.1| signal recognition particle-docking protein FtsY [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329999134|ref|ZP_08303335.1| signal recognition particle-docking protein FtsY [Klebsiella sp. MS 92-3] gi|259042123|gb|EEW43153.1| signal recognition particle-docking protein FtsY [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328538428|gb|EGF64549.1| signal recognition particle-docking protein FtsY [Klebsiella sp. MS 92-3] Length = 517 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 215 FFARLKRSLLKTKQNLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 274 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 275 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 333 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 334 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 393 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 394 RHVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVDAPHEVMLTIDASTGQNAISQAKL 453 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 454 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDF 508 >gi|290511957|ref|ZP_06551325.1| cell division protein FtsY [Klebsiella sp. 1_1_55] gi|289775747|gb|EFD83747.1| cell division protein FtsY [Klebsiella sp. 1_1_55] Length = 504 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 202 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 261 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 262 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 320 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 321 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 380 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 381 RHVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVDAPHEVMLTIDASTGQNAISQAKL 440 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 441 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDF 495 >gi|281180493|dbj|BAI56823.1| ABC transporter permease component [Escherichia coli SE15] Length = 498 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGLRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|206578548|ref|YP_002236165.1| cell division protein FtsY [Klebsiella pneumoniae 342] gi|206567606|gb|ACI09382.1| cell division protein FtsY [Klebsiella pneumoniae 342] Length = 507 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 205 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 264 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 265 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 323 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 324 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 383 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 384 RHVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVDAPHEVMLTIDASTGQNAISQAKL 443 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 444 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDF 498 >gi|91212953|ref|YP_542939.1| cell division protein FtsY [Escherichia coli UTI89] gi|218560532|ref|YP_002393445.1| cell division protein FtsY [Escherichia coli S88] gi|237703211|ref|ZP_04533692.1| cell division protein FtsY [Escherichia sp. 3_2_53FAA] gi|91074527|gb|ABE09408.1| cell division protein FtsY [Escherichia coli UTI89] gi|218367301|emb|CAR05079.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein ; conserved hypothetical protein [Escherichia coli S88] gi|226902475|gb|EEH88734.1| cell division protein FtsY [Escherichia sp. 3_2_53FAA] gi|294490549|gb|ADE89305.1| cell division protein FtsY [Escherichia coli IHE3034] gi|307628537|gb|ADN72841.1| cell division protein FtsY [Escherichia coli UM146] gi|315286125|gb|EFU45563.1| signal recognition particle-docking protein FtsY [Escherichia coli MS 110-3] gi|323950132|gb|EGB46015.1| signal recognition particle-docking protein FtsY [Escherichia coli H252] Length = 498 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 123/295 (41%), Positives = 186/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQN + Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNGVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|146309189|ref|YP_001189654.1| signal recognition particle-docking protein FtsY [Pseudomonas mendocina ymp] gi|145577390|gb|ABP86922.1| signal recognition particle-docking protein FtsY [Pseudomonas mendocina ymp] Length = 475 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 132/298 (44%), Positives = 197/298 (66%), Gaps = 4/298 (1%) Query: 12 SWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 S+ +L +G + TS L EG+ + + + +DD + ++LE L+ +D+GV I+ L Sbjct: 168 SFFARLKQGLSKTSASLGEGMASLFLGKKAIDDDLLDDLETRLLTADVGVEATTTIIGNL 227 Query: 71 LTKRYA-KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 TKR A K+++ LY + E + +L P+ +P D + +P+VILVVGVNGVGKTT I Sbjct: 228 -TKRVARKELADSGALYKALQEELVTLLKPVEQPLVIDSAKQPYVILVVGVNGVGKTTTI 286 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ ++A + Sbjct: 287 GKLAKKLQLDGKKVMLAAGDTFRAAAVEQLQVWGERNNIAVIAQHTGADSASVIFDAVQA 346 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+++ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q Sbjct: 347 AKSRGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAISQ 406 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL PF A+ F Sbjct: 407 AKQFDQTVNLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRPFEAQAF 464 >gi|258546171|ref|ZP_05706405.1| signal recognition particle-docking protein FtsY [Cardiobacterium hominis ATCC 15826] gi|258518596|gb|EEV87455.1| signal recognition particle-docking protein FtsY [Cardiobacterium hominis ATCC 15826] Length = 428 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 123/304 (40%), Positives = 189/304 (62%), Gaps = 7/304 (2%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVA 63 K +ES + ++ +G A T + G D+ + + LD + ++LE L+ +D+G+ V Sbjct: 122 KPKNESGGYFARIRQGLAKT----RRGFADLFLGKKTLDQDLIDDLETQLLTADVGIEVT 177 Query: 64 QKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + I++ + + K++ V+ V V + + ++L P ++P + + +P VIL+ G+NG Sbjct: 178 RNIIDSVTAQIDRKELKDVEAVKAAVRDHMQQLLAPYAQPLDTSRT-KPFVILMTGINGA 236 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL++ G KVMLAAGDTFR+AA++QL+ W R + + G+DAA++A Sbjct: 237 GKTTTIGKLARYFQQEGKKVMLAAGDTFRAAAVEQLQTWGARHNVPVIAQGTGADAASVA 296 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A A+ +DVLIIDTAGRLH LM + K+ RV+ +LDP APH + ++DA G Sbjct: 297 YDALQSATARGIDVLIIDTAGRLHTQDHLMEELKKIKRVIAKLDPAAPHETMLIIDAGNG 356 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNALRQ E FH + +TK+DGTA+GG L I IP+ ++GVGE DL PF Sbjct: 357 QNALRQAEQFHKAMQLDSITVTKLDGTAKGGILFAISEKLGIPIRYIGVGEQPEDLRPFN 416 Query: 303 AKDF 306 A++F Sbjct: 417 AQEF 420 >gi|331674949|ref|ZP_08375706.1| cell division protein FtsY [Escherichia coli TA280] gi|331067858|gb|EGI39256.1| cell division protein FtsY [Escherichia coli TA280] Length = 527 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 123/295 (41%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 225 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 284 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 285 GASRKQLRDAEALYGLLKDEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 343 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 344 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 403 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 404 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 463 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 464 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 518 >gi|82545827|ref|YP_409774.1| cell division protein FtsY [Shigella boydii Sb227] gi|187733547|ref|YP_001882149.1| cell division protein FtsY [Shigella boydii CDC 3083-94] gi|81247238|gb|ABB67946.1| cell division membrane protein [Shigella boydii Sb227] gi|187430539|gb|ACD09813.1| cell division protein FtsY [Shigella boydii CDC 3083-94] gi|320187768|gb|EFW62443.1| cell division protein FtsY [Shigella flexneri CDC 796-83] Length = 497 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 254 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 255 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 313 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 314 ARQFELQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 433 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 434 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488 >gi|254482617|ref|ZP_05095855.1| signal recognition particle-docking protein FtsY [marine gamma proteobacterium HTCC2148] gi|214036976|gb|EEB77645.1| signal recognition particle-docking protein FtsY [marine gamma proteobacterium HTCC2148] Length = 372 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 130/318 (40%), Positives = 199/318 (62%), Gaps = 4/318 (1%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIG 59 +N + +L +G TS L +G+ ++ R+ +D+ + EELE L+ +D+G Sbjct: 54 FTNDAAPQDKPGIFGRLRRGLGRTSDSLVQGLGNLFLGRKEIDEELLEELESRLLMADVG 113 Query: 60 VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVG 118 + I+++L+ + K+++ +L + L+ P +P + H+P+VIL+VG Sbjct: 114 IEATMDIIDKLMLRVSRKELTNPELLQGALKEELLSLLKPCEQPLSVS-GHQPYVILMVG 172 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNGVGKTT IGKL+K+ G VMLAAGDTFR+AA++QL++W DR S V G+D+ Sbjct: 173 VNGVGKTTTIGKLAKRFQSQGKSVMLAAGDTFRAAAVEQLQVWGDRNSVPVVAQHTGADS 232 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 A++ ++A + AQA+ +DVLI DTAGRLHN LM + K++RV+ +LD APH V+ VLD Sbjct: 233 ASVIFDALQAAQARNIDVLIADTAGRLHNKDNLMEELKKVVRVMGKLDQSAPHEVMLVLD 292 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A TGQNAL Q + F G +G+ +TK+DGTA+GG + I +P+ F+G+GE ++DL Sbjct: 293 AGTGQNALAQADHFQQWVGVSGISLTKLDGTAKGGVIFAIAKKLGLPIRFIGIGEAVDDL 352 Query: 299 EPFVAKDF-SAVITGCLD 315 PF A+ F A+ G D Sbjct: 353 RPFEAEPFIEALFAGNED 370 >gi|117625742|ref|YP_859065.1| cell division protein FtsY [Escherichia coli APEC O1] gi|115514866|gb|ABJ02941.1| cell division protein FtsY [Escherichia coli APEC O1] Length = 498 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 123/295 (41%), Positives = 186/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQN + Q ++ Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNGVSQAKL 434 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489 >gi|296133560|ref|YP_003640807.1| signal recognition particle-docking protein FtsY [Thermincola sp. JR] gi|296032138|gb|ADG82906.1| signal recognition particle-docking protein FtsY [Thermincola potens JR] Length = 304 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 134/298 (44%), Positives = 194/298 (65%), Gaps = 3/298 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + KL + T E I +++ R+ +D+ + EELE+ LI+SD+G+ A ++VEE Sbjct: 1 MGFFSKLKEKLTKTREGFVEKIESLVTGRKKIDEELYEELEEALIQSDVGINTALELVEE 60 Query: 70 LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L + + V L ++ E+I ++LM + +P+VI+VVGVNGVGKTT I Sbjct: 61 LRRRVKERKVEDAAELKNILQEIITEVLMDDESRLELE-KGKPNVIMVVGVNGVGKTTTI 119 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ ++ G KV+LAAGDTFR+AAIDQL+IW++R D + + +D AA+ ++A + Sbjct: 120 GKLAYQIKVGGRKVLLAAGDTFRAAAIDQLEIWSNRVGCDIIKHKENADPAAVVFDAIQA 179 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +DVLIIDTAGRLH S LM + K+ RV+ R P APH VL VLDATTGQNA+ Q Sbjct: 180 ARARNIDVLIIDTAGRLHTKSNLMEELKKVYRVINREMPDAPHEVLLVLDATTGQNAISQ 239 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++F G TG+++TK+DGTA+GG +I I +PV +GVGE I DL PF +F Sbjct: 240 AKLFGEAVGVTGIVLTKLDGTAKGGVIIGIKKELDVPVKLIGVGEQIEDLRPFKPGEF 297 >gi|288933155|ref|YP_003437214.1| signal recognition particle-docking protein FtsY [Klebsiella variicola At-22] gi|288887884|gb|ADC56202.1| signal recognition particle-docking protein FtsY [Klebsiella variicola At-22] Length = 507 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 205 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 264 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 265 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 323 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 324 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 383 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 384 RHVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVDAPHEVMLTIDASTGQNAISQAKL 443 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 444 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDF 498 >gi|289207356|ref|YP_003459422.1| signal recognition particle-docking protein FtsY [Thioalkalivibrio sp. K90mix] gi|288942987|gb|ADC70686.1| signal recognition particle-docking protein FtsY [Thioalkalivibrio sp. K90mix] Length = 347 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 126/301 (41%), Positives = 188/301 (62%), Gaps = 2/301 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W ++L +G A T L + + R++DD + EELE+ L+ +D+G+ Q+I++ + Sbjct: 44 WFQRLRQGLAKTGQALGGDLKSLFR-RKIDDELFEELEERLLLADVGLDATQRIMDRITR 102 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + +++ L D E + ++L P+S+P + + RP ILVVG+NG GKTT IGKL Sbjct: 103 EVKRRELDNADALMDALETAMVEILEPVSRPLDIPQAERPFSILVVGINGAGKTTTIGKL 162 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + D G V+LAAGDTFR+AA++QL+ W +R + G+D+A++ Y+ + AQA Sbjct: 163 AHRFKDEGRSVLLAAGDTFRAAAVEQLQTWGERNGVPVIAQGTGADSASVVYDGLQAAQA 222 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +K D+LI DTAGRLH + LM + K+ RV+ RLD HAP VL V+D TGQNAL Q Sbjct: 223 RKTDILIADTAGRLHTQTNLMDEVRKVKRVMGRLDEHAPDEVLLVVDGGTGQNALSQARQ 282 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 FH G TG+++TK+DGTA+GG L + +PV F+GVGE DL+ F A+ F + Sbjct: 283 FHEALGLTGIVVTKLDGTAKGGVLFALAEQLGVPVRFIGVGEKAEDLQRFDARAFVRALL 342 Query: 312 G 312 G Sbjct: 343 G 343 >gi|320104118|ref|YP_004179709.1| signal recognition particle-docking protein FtsY [Isosphaera pallida ATCC 43644] gi|319751400|gb|ADV63160.1| signal recognition particle-docking protein FtsY [Isosphaera pallida ATCC 43644] Length = 309 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 129/304 (42%), Positives = 189/304 (62%), Gaps = 8/304 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIIS--SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 SWI +L G A T+ L D+ S R +D E LE L+++D+GV ++++++ Sbjct: 3 SWIERLKAGLAKTAKLL-----DVRSWLGRTVDQSFLERLEAQLLQADVGVKATERLLQK 57 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVI 128 + K + + +ELI+ + P ++ P +L+ GVNG GKTT + Sbjct: 58 VKEGFEGKTADEDLLAFVKAELINLLTPAGGAPEAIRYAPTPPTTLLIAGVNGSGKTTSV 117 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+ ++ G ++LAA DTFR+AA DQL +WA RT AD V + G+D A++A++A + Sbjct: 118 AKLTHRIRSEGKSLVLAACDTFRAAAADQLAVWAQRTGADLVRGQTGADPASVAHDACDR 177 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A A+K DVL++DTAGRLH + LM + K+ VL+R P+APH V VLD T GQNA+RQ Sbjct: 178 ALARKADVLMVDTAGRLHTQTHLMRELEKIRNVLQRKIPNAPHEVFLVLDGTAGQNAIRQ 237 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 EMF G TG+I+TK+DGTA+GG + I T +PV F+GVGEGI+DL+PF A++F A Sbjct: 238 AEMFSKSIGCTGIILTKLDGTAKGGVAVAIRQTLDLPVRFIGVGEGIDDLQPFRAEEFVA 297 Query: 309 VITG 312 + G Sbjct: 298 SLFG 301 >gi|332090291|gb|EGI95389.1| signal recognition particle-docking protein FtsY [Shigella boydii 3594-74] Length = 515 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 213 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 272 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 273 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 331 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 332 ARQFELQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 391 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 392 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 451 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 452 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 506 >gi|74316394|ref|YP_314134.1| signal recognition particle-docking protein FtsY [Thiobacillus denitrificans ATCC 25259] gi|74055889|gb|AAZ96329.1| Cell division transporter substrate-binding protein FtsY [Thiobacillus denitrificans ATCC 25259] Length = 376 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 124/298 (41%), Positives = 188/298 (63%), Gaps = 4/298 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +SW ++L +G A T +L + + R++D + EELE +LI +DIGV Q +++ Sbjct: 74 VSWAQRLKQGLAKTRDRLGGQLAGLFGVGRKIDAELFEELETILITADIGVDATQALLDT 133 Query: 70 LLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L K R + + + + ML+PL P + +H+P ++++ GVNG GKTT I Sbjct: 134 LQKKVRRENLTEASELQTALKQALIDMLLPLQAPLDVK-THKPFILMLAGVNGAGKTTTI 192 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+K GL V+LAAGDTFR+AA +QL++W +R V E G D+AA+ ++A + Sbjct: 193 GKLAKLYQAQGLSVLLAAGDTFRAAAREQLQVWGERNGVTVVSQEKG-DSAAVIFDAIQA 251 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +DV++ DTAGRL LM I K+ RV+++ P APH +L VLDA TGQNA+ Q Sbjct: 252 ARARNIDVVLADTAGRLPTQLHLMEEIRKVKRVIEKAIPGAPHEILLVLDANTGQNAVAQ 311 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 V+ F G +GL++TK+DGTA+GG + + +PV ++GVGE ++DL PF A+DF Sbjct: 312 VKAFDDALGVSGLVLTKLDGTAKGGAIAAVAQARPLPVRYIGVGETVDDLRPFDARDF 369 >gi|168235165|ref|ZP_02660223.1| signal recognition particle-docking protein FtsY [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736508|ref|YP_002116506.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194712010|gb|ACF91231.1| signal recognition particle-docking protein FtsY [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291314|gb|EDY30666.1| signal recognition particle-docking protein FtsY [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|322614063|gb|EFY10999.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617955|gb|EFY14848.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625431|gb|EFY22257.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629896|gb|EFY26669.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632215|gb|EFY28966.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636434|gb|EFY33141.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643095|gb|EFY39669.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644710|gb|EFY41246.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651268|gb|EFY47652.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652819|gb|EFY49158.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659121|gb|EFY55373.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663177|gb|EFY59381.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668664|gb|EFY64817.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674533|gb|EFY70626.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678262|gb|EFY74323.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682482|gb|EFY78503.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684195|gb|EFY80201.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192250|gb|EFZ77482.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196323|gb|EFZ81475.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201875|gb|EFZ86938.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206418|gb|EFZ91379.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212011|gb|EFZ96838.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216916|gb|EGA01639.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222316|gb|EGA06699.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224330|gb|EGA08619.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228258|gb|EGA12389.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233474|gb|EGA17567.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237064|gb|EGA21131.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243721|gb|EGA27737.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246037|gb|EGA30024.1| signal recognition particle-docking protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250813|gb|EGA34691.1| signal recognition particle-docking protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257691|gb|EGA41377.1| signal recognition particle-docking protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261900|gb|EGA45467.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267708|gb|EGA51190.1| signal recognition particle-docking protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268588|gb|EGA52055.1| signal recognition particle-docking protein FtsY [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 491 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248 Query: 73 KRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 249 GASRKQLKDAEALYGLLKGEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482 >gi|157829036|ref|YP_001495278.1| cell division protein ftsY [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933760|ref|YP_001650549.1| signal recognition particle-docking protein FtsY [Rickettsia rickettsii str. Iowa] gi|157801517|gb|ABV76770.1| cell division protein ftsY [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908847|gb|ABY73143.1| cell division protein [Rickettsia rickettsii str. Iowa] Length = 303 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 132/303 (43%), Positives = 190/303 (62%), Gaps = 3/303 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 +S KL + + TS K+ EGI I ++LD E LE+LLI SD+ V V I+EE Sbjct: 2 ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAETLEALEELLISSDMSVLVVTNIIEEF 61 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++ K++ V +++LI + L PF ++ +VILV GVNG GKTT IGK Sbjct: 62 KKVKFDKEIDSDTVKEALAKLIEQQLSKSEIPFTLS-ENKLNVILVCGVNGAGKTTTIGK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ S G KV +AA DTFR+AA++QL WADR +A + E +D A++AY +++ Sbjct: 121 LAAMYSAQGKKVAVAACDTFRAAAVNQLSTWADRANALLITGEESADPASVAYRGMEESI 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249 + +D+L IDTAGRLHN LM + K+++V+K+LD +AP HSVL V+DA TGQN QV Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVL-VIDAITGQNTYNQV 239 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F+ TGLI+TK+DG+A+ G ++ +V +P+YF+G+GE I DL+ F DF+ Sbjct: 240 EHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNQHDFARN 299 Query: 310 ITG 312 I G Sbjct: 300 IVG 302 >gi|323162704|gb|EFZ48543.1| signal recognition particle-docking protein FtsY [Escherichia coli E128010] Length = 515 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 123/295 (41%), Positives = 186/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 213 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 272 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 273 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 331 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 332 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASIIFDAIQAAKA 391 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DVLI DTAGRL N S LM + K++RV+K+LD PH V+ +DA+TGQNA+ Q ++ Sbjct: 392 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVETPHEVMLTIDASTGQNAVSQAKL 451 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 452 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 506 >gi|310815518|ref|YP_003963482.1| signal recognition particle-docking protein FtsY [Ketogulonicigenium vulgare Y25] gi|308754253|gb|ADO42182.1| signal recognition particle-docking protein FtsY [Ketogulonicigenium vulgare Y25] Length = 317 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 124/313 (39%), Positives = 201/313 (64%), Gaps = 12/313 (3%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISS-----------RRLDDGVREELEDLLIRSDIG 59 +S KL +S +L GI I++ R +DD + EELE+LLI +D+G Sbjct: 1 MSLFSKLKDRLFKSSTRLDAGIEGIVADAPAASAADEARRTVDDAMLEELEELLITADMG 60 Query: 60 VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 V A ++ + + + ++ + + ++ + +++ P+++P + +P V+LVVGV Sbjct: 61 VETATRVTANIGDALHGRRLTTREIKEALAREVGRIMEPVARPLPI-YPKKPQVVLVVGV 119 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NG GKTT IGKL+ + AG +V++AAGDTFR+AA++QL++W +R + + GSD A Sbjct: 120 NGSGKTTTIGKLASQFKAAGKQVVVAAGDTFRAAAVEQLQVWGERAGVPVLTAPEGSDPA 179 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 +LA++A +A+ D+L+IDTAGRL N LM + K++RV+++ DP APH+ L VLDA Sbjct: 180 SLAFDAMTRAEEIGADLLLIDTAGRLQNRQDLMEELAKIVRVIRKKDPSAPHNTLLVLDA 239 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNA+ QV++F +A +GL+MTK+DGTARGG L+ + +P++ +G+GE I+DL Sbjct: 240 TTGQNAVMQVDIFRKIADVSGLVMTKLDGTARGGVLVALADKFGLPIHAIGLGEQIDDLA 299 Query: 300 PFVAKDFSAVITG 312 PF ++F+ + G Sbjct: 300 PFDPQEFARALCG 312 >gi|306820822|ref|ZP_07454446.1| cell division protein FtsY [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551140|gb|EFM39107.1| cell division protein FtsY [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 395 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 128/294 (43%), Positives = 192/294 (65%), Gaps = 5/294 (1%) Query: 16 KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +L +G TS E ++ ++DD + EELE++LI SDI KIVE L Sbjct: 99 RLKEGLKKTSDSFTEKFDNLFKGYLKIDDDLYEELEEILITSDISFDTTLKIVENLKKNI 158 Query: 75 YAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 K++ V V ++ E+++++L + D ++ ++I++VGVNGVGKTT IGKL+ Sbjct: 159 KKKNINDVNLVKPELKEVLYELLENNNSKL--DVENQKNIIVIVGVNGVGKTTTIGKLAS 216 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQAK 192 K + G V+LAAGDTFR+AA +QL+IW+ R D V +E G+D +A+ Y+A ++A++K Sbjct: 217 KFKNEGKSVLLAAGDTFRAAAEEQLEIWSTRAGVDIVRHNESGADPSAVIYDAIQRAKSK 276 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 D+LI DTAGRLHN LM + K++R++ + P A VL V+DATTGQNAL QV+ F Sbjct: 277 NTDILICDTAGRLHNKVNLMNELSKIMRIIGKQYPDAKKEVLLVIDATTGQNALNQVKTF 336 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + TG+I+TK+DGTA+GG ++ IV +K+PV F+GVGE ++DL+ F K+F Sbjct: 337 NEAVELTGVILTKLDGTAKGGVVLSIVDEYKLPVKFIGVGEKVDDLQEFDYKNF 390 >gi|29655188|ref|NP_820880.1| cell division protein [Coxiella burnetii RSA 493] gi|154706782|ref|YP_001423641.1| cell division protein [Coxiella burnetii Dugway 5J108-111] gi|29542460|gb|AAO91394.1| cell division protein [Coxiella burnetii RSA 493] gi|154356068|gb|ABS77530.1| cell division protein [Coxiella burnetii Dugway 5J108-111] Length = 324 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 129/310 (41%), Positives = 195/310 (62%), Gaps = 4/310 (1%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVA 61 N + + W+ +L + T +L +G+++++ ++ +D + EELE +L+ +DIG+ Sbjct: 14 NNETSKPKKGWLGRLNESLKRTRSRLTDGLSNLVLGKKTIDASLLEELEMILLSADIGIE 73 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 Q I+ L + K +S + L D ++ + +L P K + + S P VIL VGVN Sbjct: 74 ATQSILNNLSQQVARKSLSDPKALIDALKIELLNILEPCQK--HLEISASPFVILTVGVN 131 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT I KL+ +VMLAAGDTFR+AAI+QL+ W R +A + + G+D+A+ Sbjct: 132 GVGKTTTIAKLAHFYQSQKKRVMLAAGDTFRAAAIEQLQTWGQRNNAPVIAQQPGADSAS 191 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + Y+A + A A+ D+LI DTAGRLH S LM + K+ RV+K+++P APH L VLDA Sbjct: 192 VIYDAMEAATARHYDLLIADTAGRLHTQSHLMDELAKIKRVMKKINPDAPHETLLVLDAG 251 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNA+ Q E FH G TG+ +TK+DGTA+GG + I ++P+ F+G+GE I DL+P Sbjct: 252 TGQNAINQAEQFHEHIGLTGIAITKLDGTAKGGVIFAIAKKMQLPIRFIGMGEKIEDLKP 311 Query: 301 FVAKDFSAVI 310 F AK+F A + Sbjct: 312 FNAKEFIAAL 321 >gi|297172255|gb|ADI23233.1| hypothetical protein [uncultured nuHF2 cluster bacterium HF0770_13K08] Length = 457 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 123/300 (41%), Positives = 188/300 (62%), Gaps = 1/300 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 +++ +L KG T +L + + + + R+ +++ + ++LE++LI SDIG Q+I++ + Sbjct: 156 TFLERLRKGVVKTRTQLLDNLAEAVLGRKEINEDLLDDLEEVLIGSDIGPETTQRILDAI 215 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K +++S +VL +L + +M + +P ++L VGVNGVGKTT IGK Sbjct: 216 TEKVEREELSSPQVLQSEIQLEIQKIMSKTYAVPGTAERKPLILLFVGVNGVGKTTTIGK 275 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 ++ + G KV++ AGDTFR+AAI+QL W+ R D + E GSD +A+ YE ++ Sbjct: 276 IAAQYRQQGKKVLMGAGDTFRAAAIEQLVEWSKRADCDIIQKEPGSDPSAVMYETVQKGI 335 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + DV+I DTAGRLH LM + KM+RV+++L P APH +L VLDATTGQNA+ Q Sbjct: 336 DEDYDVVICDTAGRLHTKKNLMEELKKMVRVIRKLIPDAPHEILLVLDATTGQNAIFQTR 395 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F TGLI+TK+DGT++GG +I IV IPV ++GVGE + DL PF A+ F+ I Sbjct: 396 EFMEATDLTGLIITKLDGTSKGGVVIGIVNEFDIPVRYIGVGEQVEDLRPFDAQQFTESI 455 >gi|325267267|ref|ZP_08133929.1| cell division protein FtsY [Kingella denitrificans ATCC 33394] gi|324981204|gb|EGC16854.1| cell division protein FtsY [Kingella denitrificans ATCC 33394] Length = 521 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 132/317 (41%), Positives = 190/317 (59%), Gaps = 9/317 (2%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q E L+W +L +G + + + + + ++D+ + EELE +L+ SD+G+ Sbjct: 208 QPEEEEPLNWTARLVRGLDKSRNHMAKSLAGVFGGGKIDEDLYEELETVLLTSDMGIEAT 267 Query: 64 Q---KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K V E ++ R KD R + E I+ +L PL KP + +P VI++ G+N Sbjct: 268 EHLMKEVRERVSLRGLKDGKELR--QALKEAIYDLLKPLEKPLVLPENGQPFVIMMAGIN 325 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+K G VMLAAGDTFR+AA +QL+ W +R + E G D+AA Sbjct: 326 GAGKTTSIGKLAKYFQKQGKSVMLAAGDTFRAAAREQLQEWGERNGVVVISQEKG-DSAA 384 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++A + A+A+K+DV++ DTAGRL LM I K+ RVL++ P APH ++ VLDA Sbjct: 385 VCFDAVEAAKARKIDVVLADTAGRLPTQLHLMEEIKKVKRVLQKSMPDAPHEIIVVLDAN 444 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQNA+ QV F G TGLI+TK+DGTA+GG L + + IPV F+GVGE I+DL P Sbjct: 445 IGQNAVNQVVAFDDALGVTGLIVTKLDGTAKGGVLAALASSRAIPVRFIGVGERIDDLRP 504 Query: 301 FVAKDFSAVITGCLDYG 317 F A+ F + LD G Sbjct: 505 FNARAF---VDALLDEG 518 >gi|261341956|ref|ZP_05969814.1| cell division protein FtsY [Enterobacter cancerogenus ATCC 35316] gi|288315865|gb|EFC54803.1| cell division protein FtsY [Enterobacter cancerogenus ATCC 35316] Length = 497 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 123/295 (41%), Positives = 186/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 254 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 255 GASRKQLRDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 313 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + G+D+A++ ++A + A+A Sbjct: 314 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVIAQHTGADSASVIFDAIQAAKA 373 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH ++ +DA+TGQNA+ Q ++ Sbjct: 374 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEIMLTIDASTGQNAVSQAKL 433 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 434 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488 >gi|153824163|ref|ZP_01976830.1| signal recognition particle-docking protein FtsY [Vibrio cholerae B33] gi|126518315|gb|EAZ75540.1| signal recognition particle-docking protein FtsY [Vibrio cholerae B33] Length = 303 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 121/291 (41%), Positives = 188/291 (64%), Gaps = 1/291 (0%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 L + T + G + +++DD + EELE+ L+ +D+G+ KI+ L + Sbjct: 4 LKAQLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTARASR 63 Query: 77 KDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 + + LY + E + ++L + +P D +P+VIL+VGVNGVGKTT IGKL+K+ Sbjct: 64 QQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQF 123 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+A+ +D Sbjct: 124 QAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAKARGID 183 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 V+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q ++F V Sbjct: 184 VVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAKLFSDV 243 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 A TG+ +TK+DGTA+GG + I +IP+ ++GVGE I+DL PF ++F Sbjct: 244 APITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 294 >gi|88705467|ref|ZP_01103178.1| signal recognition particle-docking protein FtsY [Congregibacter litoralis KT71] gi|88700557|gb|EAQ97665.1| signal recognition particle-docking protein FtsY [Congregibacter litoralis KT71] Length = 341 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 129/296 (43%), Positives = 186/296 (62%), Gaps = 3/296 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L +G TS L G ++ R+ +D + EELE L+ +D+G+ +I+E L Sbjct: 39 FFGRLKRGLGRTSDSLAAGFGNLFLGRKTIDAELLEELESQLLIADVGIEATSEIIEHLT 98 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + K++S L + E + +L+P + F+ P VIL+VGVNGVGKTT IGK Sbjct: 99 ERVSRKELSDPEALMQALREELQSILLPCQQSFDVSVGT-PFVILMVGVNGVGKTTTIGK 157 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+++ D G VMLAAGDTFR+AA++QL+ W +R + G+D+A++ ++A + A Sbjct: 158 LARRFQDEGRSVMLAAGDTFRAAAVEQLQHWGERHDVPVIAQHTGADSASVIFDALQAAT 217 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DVLI DTAGRL N S LM + K++RVL +L+P APH V+ VLDA TGQNAL Q Sbjct: 218 ARGIDVLIADTAGRLSNKSHLMDELSKVVRVLGKLNPEAPHEVMLVLDAGTGQNALAQAA 277 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G TGL +TK+DGTA+GG + I +P+ F+GVGE DL PFVA++F Sbjct: 278 QFREAVGVTGLTLTKLDGTAKGGVIFAIARRLGLPIRFIGVGESAEDLRPFVAEEF 333 >gi|260599765|ref|YP_003212336.1| cell division protein ftsY [Cronobacter turicensis z3032] gi|260218942|emb|CBA34297.1| Cell division protein ftsY [Cronobacter turicensis z3032] Length = 327 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 188/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 25 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVDTTRKIIANLTE 84 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + E + +L + +P + + + P VIL+VGVNGVGKTT IGKL Sbjct: 85 GASRKQLRDAEALYGLLKEEMGDILAKVDEPLSVE-GNTPFVILMVGVNGVGKTTTIGKL 143 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 144 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 203 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD +APH V+ +DA+TGQNA+ Q ++ Sbjct: 204 RGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDENAPHEVMLTIDASTGQNAVSQAKL 263 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 264 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDF 318 >gi|146313500|ref|YP_001178574.1| cell division protein FtsY [Enterobacter sp. 638] gi|145320376|gb|ABP62523.1| signal recognition particle-docking protein FtsY [Enterobacter sp. 638] Length = 511 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 122/295 (41%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 209 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIASLTE 268 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ++L + +P N + P VIL+VGVNGVGKTT IGK+ Sbjct: 269 GASRKQLRDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKM 327 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 328 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 387 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH ++ LDA+TGQNA+ Q ++ Sbjct: 388 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEIMLTLDASTGQNAISQAKL 447 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF + DF Sbjct: 448 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKSDDF 502 >gi|157149052|ref|YP_001456371.1| cell division protein FtsY [Citrobacter koseri ATCC BAA-895] gi|157086257|gb|ABV15935.1| hypothetical protein CKO_04891 [Citrobacter koseri ATCC BAA-895] Length = 500 Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 123/295 (41%), Positives = 186/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 198 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 257 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + +L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 258 GASRKQLHDAEALYGLLKDEMGDILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 316 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 317 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 376 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N + LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 377 RNVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTIDASTGQNAISQAKL 436 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 437 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 491 >gi|296105156|ref|YP_003615302.1| cell division protein FtsY [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059615|gb|ADF64353.1| cell division protein FtsY [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 485 Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 122/295 (41%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 183 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 242 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 243 GASRKQLRDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 301 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A++ Sbjct: 302 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKS 361 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH ++ +DA+TGQNA+ Q ++ Sbjct: 362 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEIMLTIDASTGQNAVSQAKL 421 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 422 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 476 >gi|149278721|ref|ZP_01884857.1| signal recognition particle-docking protein FtsY [Pedobacter sp. BAL39] gi|149230716|gb|EDM36099.1| signal recognition particle-docking protein FtsY [Pedobacter sp. BAL39] Length = 320 Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 133/301 (44%), Positives = 186/301 (61%), Gaps = 17/301 (5%) Query: 17 LTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG T IT ++ + +DD V + LE++L+ SD+GV KI+E + R Sbjct: 20 LDKGLEKTKEGFLSKITKAVAGKSTVDDDVLDNLEEVLVTSDVGVTTTLKIIERI-QDRV 78 Query: 76 AKDVSVQRVLYDVSELIH----KMLMPLSKPFNWDF------SHRPHVILVVGVNGVGKT 125 AKD + +EL H ++ + LS+ + DF H+P+VI+VVGVNGVGKT Sbjct: 79 AKDKYLS-----TTELNHLLRDEIQLLLSENNSNDFRKFEYGQHKPYVIMVVGVNGVGKT 133 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKLS K+ GLKV+L A DTFR+AA++Q+K+W +R V +GSD A++A++ Sbjct: 134 TTIGKLSHKLKAEGLKVVLGAADTFRAAAVEQIKLWGERVGVRVVAQAMGSDPASVAFDT 193 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + A A DV+IIDTAGRLHN LM +GK+ V++++ P APH +L VLD +TGQNA Sbjct: 194 LQSAVANGEDVVIIDTAGRLHNKIGLMNELGKIKHVMEKVIPSAPHEILLVLDGSTGQNA 253 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 Q + F L +TK+DGTA+GG +I I KIPV ++GVGEG+NDL+ F K Sbjct: 254 FEQCKQFTEATDVNALAITKLDGTAKGGVVIGISDQFKIPVKYIGVGEGMNDLQLFDKKA 313 Query: 306 F 306 F Sbjct: 314 F 314 >gi|161505886|ref|YP_001572998.1| cell division protein FtsY [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867233|gb|ABX23856.1| hypothetical protein SARI_04065 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 497 Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 125/299 (41%), Positives = 186/299 (62%), Gaps = 10/299 (3%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 254 Query: 73 KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 K + LY ++ E++ K+ PL+ P VIL+VGVNGVGKTT Sbjct: 255 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLTIE-----GKTPFVILMVGVNGVGKTTT 309 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + Sbjct: 310 IGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQ 369 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+A+ VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Sbjct: 370 AAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVS 429 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 430 QAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488 >gi|317046490|ref|YP_004114138.1| signal recognition particle-docking protein FtsY [Pantoea sp. At-9b] gi|316948107|gb|ADU67582.1| signal recognition particle-docking protein FtsY [Pantoea sp. At-9b] Length = 454 Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 126/300 (42%), Positives = 189/300 (63%), Gaps = 12/300 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV ++I+ L Sbjct: 152 FFARLKRSLVKTRANLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRRIITNLTQ 211 Query: 73 KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126 + K + LY +++ ++ K+ PL D S + P VIL+VGVNGVGKTT Sbjct: 212 QADRKQLRDAEALYGLLKTEMAGILDKVDAPL------DVSGKTPFVILMVGVNGVGKTT 265 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A Sbjct: 266 TIGKLARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAI 325 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+A+ VDVLI DTAGRL N S LM + K+ RV+K+LD APH V+ +DA+TGQNA+ Sbjct: 326 QAAKARNVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDEDAPHEVMLTIDASTGQNAI 385 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++FH G TG+ +TK+DGTA+GG + + IP+ ++GVGEGI DL PF A DF Sbjct: 386 SQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGEGIEDLRPFKAADF 445 >gi|317494587|ref|ZP_07953000.1| signal recognition particle-docking protein FtsY [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917517|gb|EFV38863.1| signal recognition particle-docking protein FtsY [Enterobacteriaceae bacterium 9_2_54FAA] Length = 603 Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 126/296 (42%), Positives = 191/296 (64%), Gaps = 4/296 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV KI++ L Sbjct: 301 FFARLKRSLLKTKQNLGSGFFGLFRGKKIDDDLFEELEEQLLIADVGVETTSKIIKSLTE 360 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130 K++ LY + E + ++L + KP D S R P VIL+VGVNGVGKTT IGK Sbjct: 361 HASRKELKDAESLYGKLKEEMGEILSTVDKPL--DVSGRTPFVILMVGVNGVGKTTTIGK 418 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+++ G VMLAAGDTFR+AA++QL++W +R + + G+D+A++ ++A + A+ Sbjct: 419 LARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQHTGADSASVIFDAIQAAK 478 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ VDVL+ DTAGRL N + LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q + Sbjct: 479 ARNVDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTIDASTGQNAVSQAK 538 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F+ G TG+ +TK+DGTA+GG + + IP+ ++GVGEGI DL PF A DF Sbjct: 539 LFNEAVGLTGITLTKLDGTAKGGVIFAVADQFGIPIRYIGVGEGIEDLRPFKADDF 594 >gi|297539226|ref|YP_003674995.1| signal recognition particle-docking protein FtsY [Methylotenera sp. 301] gi|297258573|gb|ADI30418.1| signal recognition particle-docking protein FtsY [Methylotenera sp. 301] Length = 333 Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 127/308 (41%), Positives = 191/308 (62%), Gaps = 7/308 (2%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 ++ +VA++S W +L + + T +L + + ++D V EELE +LI SD+GV Sbjct: 25 LTEAQVAAQS--WSERLKQSLSKTRKQLGNQLASLFGGGKIDAEVYEELETILITSDVGV 82 Query: 61 AVAQKIVEELLT--KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118 + ++ ++ K + D +VQ + + E + +L PL KP + +P VI++ G Sbjct: 83 NATKNLLADIKNRVKVQSLDDTVQ-LKAALKEAMSDLLTPLQKPLDTS-GQKPFVIMLAG 140 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNG GKTT IGKL+ G V++AAGDTFR+AA +QL+IW +R + V S+ DA Sbjct: 141 VNGAGKTTSIGKLAHAFQAEGKSVLIAAGDTFRAAAREQLQIWGERNNV-HVVSQTSGDA 199 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A A+AK +D+++ DTAGRL LM I K+ RV+ + P APH VL VLD Sbjct: 200 AAVMFDAINSAKAKNIDIVLADTAGRLPTQMHLMDEIAKVKRVMDKALPGAPHEVLLVLD 259 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A TGQNA+ QV+ F G TGL+++K+DGTA+GG + I IP+ ++G+GEGI+DL Sbjct: 260 ANTGQNAVTQVKTFDDALGVTGLVLSKLDGTAKGGVIAAIAEARPIPIRYIGIGEGIDDL 319 Query: 299 EPFVAKDF 306 PF+A DF Sbjct: 320 RPFIAADF 327 >gi|253722851|pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli Length = 295 Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 123/284 (43%), Positives = 183/284 (64%), Gaps = 2/284 (0%) Query: 24 TSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83 T L G + +++DD + EELE+ L+ +D+GV +KI+ L K + Sbjct: 6 TKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAE 65 Query: 84 VLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 LY + E + ++L + +P N + P VIL+VGVNGVGKTT IGKL+++ G V Sbjct: 66 ALYGLLKEEMGEILAKVDEPLNVE-GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSV 124 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 MLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A+ +DVLI DTA Sbjct: 125 MLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTA 184 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++FH G TG+ Sbjct: 185 GRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGIT 244 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 245 LTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 288 >gi|296108316|ref|YP_003620017.1| signal recognition particle receptor [Legionella pneumophila 2300/99 Alcoy] gi|295650218|gb|ADG26065.1| signal recognition particle receptor [Legionella pneumophila 2300/99 Alcoy] Length = 355 Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 133/309 (43%), Positives = 189/309 (61%), Gaps = 3/309 (0%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63 K S S + KG + T +L EGI+ ++ + + + EELE LLI +D+G+ Sbjct: 41 KEPSPKESIFARFRKGLSKTRHQLGEGISRLLLGKKEISQELLEELETLLISADLGLDTT 100 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSH-RPHVILVVGVNG 121 Q ++++L K +S +Y + + +L KP + + P VIL+VGVNG Sbjct: 101 QDVLKQLNEGLARKQLSNGEAVYQTLKTNLQTILSQEEKPLSIETEDGSPFVILMVGVNG 160 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+K+ G KVMLAAGDTFR+AA++QL +W +R + G+D+A++ Sbjct: 161 AGKTTTIGKLAKQFQKQGKKVMLAAGDTFRAAAVEQLHVWGERNGIPVIAQHTGADSASV 220 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+K+D+LI DTAGRLH S LM + K+ RV+++LDP APH + VLDA+ Sbjct: 221 IFDALQAAKARKIDILIADTAGRLHTQSNLMEELKKVKRVMQKLDPKAPHETMLVLDASI 280 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL Q + FH TG+ MTK+DGTA+GG L I IP +LGVGEGI DL PF Sbjct: 281 GQNALAQAKQFHEAVQLTGITMTKLDGTAKGGILFAIANDLGIPFRYLGVGEGIEDLRPF 340 Query: 302 VAKDFSAVI 310 A F + I Sbjct: 341 DAAQFVSAI 349 >gi|15604608|ref|NP_221126.1| cell division protein FTSY (ftsY) [Rickettsia prowazekii str. Madrid E] gi|6016061|sp|O05948|FTSY_RICPR RecName: Full=Cell division protein ftsY homolog gi|2073477|emb|CAA72477.1| cell division protein [Rickettsia prowazekii] gi|3861303|emb|CAA15202.1| CELL DIVISION PROTEIN FTSY (ftsY) [Rickettsia prowazekii] gi|292572424|gb|ADE30339.1| Signal recognition particle-docking protein FtsY [Rickettsia prowazekii Rp22] Length = 303 Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 131/303 (43%), Positives = 189/303 (62%), Gaps = 3/303 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 ++ KL + + TS + GI I R+LD ELE+LLI SDI ++V I+EE Sbjct: 2 ITIFNKLKQSLSKTSNTISAGIDKIFYKRKLDKETLNELEELLISSDISISVVTHIIEEF 61 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++ K + V +++LI + L PF ++ ++ILV GVNGVGKTT IGK Sbjct: 62 KNVKFDKTIDSDTVKEAIAKLIEQQLSKSEIPFTLS-ENKLNIILVCGVNGVGKTTTIGK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 LS S G KV +AA DTFR+AAI+QL W R +A + + +D A++AY A +++ Sbjct: 121 LSALYSAEGKKVAVAACDTFRAAAINQLSSWVHRANALLITGKASADPASVAYRAIEESI 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249 + +D+L IDTAGRLHNN LM + K+++V+K+LD +AP HS+L ++DA TGQN Q+ Sbjct: 181 KQNIDILFIDTAGRLHNNKNLMDELSKIVKVIKKLDENAPTHSIL-IIDAITGQNTYNQI 239 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F+ V TGLI+TK+DG+A+ G L+ V +PVYF+G+GE I DL+ F DFS Sbjct: 240 EYFNDVTNLTGLIVTKLDGSAKAGVLVGAVQKFNLPVYFIGIGEKIEDLKIFNRHDFSRS 299 Query: 310 ITG 312 + G Sbjct: 300 LVG 302 >gi|332968151|gb|EGK07234.1| cell division protein FtsY [Kingella kingae ATCC 23330] Length = 545 Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 127/304 (41%), Positives = 190/304 (62%), Gaps = 14/304 (4%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 SL W +L +G + + ++ + + + ++D+ + EELE +LI SD+G+ ++++ E Sbjct: 239 SLGWTARLARGLSKSRNQMAKSLAGVFGGGKIDEDLYEELETVLITSDMGIEATEQLMNE 298 Query: 70 LLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + + VS+ + L D +EL I+ +L PL +P + +P VI++ G+NG Sbjct: 299 VRNR-----VSL-KGLKDGAELRSALKDAIYDLLKPLDQPLVLPDNGQPFVIMMAGINGA 352 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K G VMLAAGDTFR+AA +QL+ W R + + E G D+AA+ Sbjct: 353 GKTTSIGKLAKYFQSQGKSVMLAAGDTFRAAAREQLQEWGARNNVTVISQEKG-DSAAVC 411 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+A+K+DV++ DTAGRL LM I K+ RVL++ P APH ++ VLDA G Sbjct: 412 FDAVEAAKARKIDVVLADTAGRLPTQLHLMEEIKKVKRVLQKSMPDAPHEIMVVLDANIG 471 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ QV F G TGLI+TK+DGTA+GG L + + IPV ++GVGE I+DL PF Sbjct: 472 QNAVNQVVAFDDALGVTGLIVTKLDGTAKGGVLAALASSRAIPVRYIGVGESIDDLRPFN 531 Query: 303 AKDF 306 AK F Sbjct: 532 AKAF 535 >gi|294669442|ref|ZP_06734519.1| signal recognition particle-docking protein FtsY [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308646|gb|EFE49889.1| signal recognition particle-docking protein FtsY [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 500 Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 122/304 (40%), Positives = 192/304 (63%), Gaps = 2/304 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++ +E+ W +L +G + + K+ + + + ++D+ + EELE +L+ SD+G+ Sbjct: 191 EEQPAETGGWTARLKQGLSKSRDKMAKSLAGVFGGGKIDEDLYEELETVLLTSDMGIEAT 250 Query: 64 QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + +++E+ + K +S R L + E ++ +L PL KP + +P VI++ G+NG Sbjct: 251 EHLMDEVRRRVSLKGLSDGRELRQALKEAVYDLLSPLEKPLEIPDNGQPFVIMMAGINGA 310 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K G V+LAAGDTFR+AA +QL+ W +R V S++ D+AA+ Sbjct: 311 GKTTSIGKLAKYFQSQGKSVILAAGDTFRAAAREQLQEWGERNGV-TVISQVKGDSAAVC 369 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+A+K+D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA G Sbjct: 370 FDAVEAAKARKIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKSMPDAPHEIIVVLDANIG 429 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ QV F G TGLI+TK+DGTA+GG L + + IPV ++GVGE I+DL PF Sbjct: 430 QNAVGQVAAFDDTLGVTGLIVTKLDGTAKGGVLAALASSRPIPVRYIGVGEKIDDLRPFD 489 Query: 303 AKDF 306 A+ F Sbjct: 490 ARAF 493 >gi|295097062|emb|CBK86152.1| signal recognition particle-docking protein FtsY [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 486 Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 122/295 (41%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 184 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 243 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 244 GASRKQLRDAEALYGLLKDEMGEILAKVDEPLNIE-GKMPFVILMVGVNGVGKTTTIGKL 302 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A++ Sbjct: 303 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKS 362 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH ++ +DA+TGQNA+ Q ++ Sbjct: 363 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEIMLTIDASTGQNAISQAKL 422 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 423 FHEAVGLTGIALTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 477 >gi|307611546|emb|CBX01226.1| hypothetical protein LPW_29241 [Legionella pneumophila 130b] Length = 355 Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 134/309 (43%), Positives = 189/309 (61%), Gaps = 3/309 (0%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63 K S S + KG + T +L EGI+ ++ + + + EELE LLI +D+G+ Sbjct: 41 KEPSPKESIFARFRKGLSKTRHQLGEGISRLLLGKKEISQELLEELETLLISADLGLDTT 100 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSH-RPHVILVVGVNG 121 Q ++++L K +S +Y + + +L KP + + P VIL+VGVNG Sbjct: 101 QDVLKQLNEGLARKQLSNGDAVYQTLKTNLQTILSQEEKPLSIETEDGSPFVILMVGVNG 160 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+K+ G KVMLAAGDTFR+AA++QL +W +R + G+D+A++ Sbjct: 161 AGKTTTIGKLAKQFQKQGKKVMLAAGDTFRAAAVEQLHVWGERNGIPVIAQHTGADSASV 220 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+K+DVLI DTAGRLH S LM + K+ RV+++LDP APH + VLDA+ Sbjct: 221 IFDALQAAKARKIDVLIADTAGRLHTQSNLMEELKKVKRVMQKLDPKAPHETMLVLDASI 280 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL Q + FH TG+ MTK+DGTA+GG L I IP +LGVGEGI DL PF Sbjct: 281 GQNALAQAKQFHEAVQLTGITMTKLDGTAKGGILFAIANDLGIPFRYLGVGEGIEDLRPF 340 Query: 302 VAKDFSAVI 310 A F + I Sbjct: 341 DAAQFVSAI 349 >gi|255533405|ref|YP_003093777.1| signal recognition particle-docking protein FtsY [Pedobacter heparinus DSM 2366] gi|255346389|gb|ACU05715.1| signal recognition particle-docking protein FtsY [Pedobacter heparinus DSM 2366] Length = 320 Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 131/301 (43%), Positives = 187/301 (62%), Gaps = 17/301 (5%) Query: 17 LTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG T IT ++ + +DD V + LE++L+ SD+GV+ KI+E + +R Sbjct: 20 LDKGLEKTKEGFFSKITKAVAGKSSIDDDVLDNLEEVLVTSDVGVSTTLKIIERI-EQRV 78 Query: 76 AKDVSVQRVLYDVSELIH----KMLMPLSKPFNWDF------SHRPHVILVVGVNGVGKT 125 AKD + +EL H ++ + L++ + DF H+P+VI+VVGVNGVGKT Sbjct: 79 AKDKYLS-----TTELNHLLRDEIQLLLAENNSNDFRQFEYGQHKPYVIMVVGVNGVGKT 133 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+ K+ LKV+L A DTFR+AA++Q+K+W +R V +GSD A++AY+ Sbjct: 134 TTIGKLAHKLKAENLKVVLGAADTFRAAAVEQIKLWGERVGVRVVAQAMGSDPASVAYDT 193 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + A A DV+IIDTAGRLHN LM +GK+ V++++ P APH +L VLD +TGQNA Sbjct: 194 LQSAVANGEDVVIIDTAGRLHNKVGLMNELGKIKNVMQKVIPSAPHEILLVLDGSTGQNA 253 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 Q + F L +TK+DGTA+GG +I I KIPV ++GVGEG+NDL+ F K Sbjct: 254 FEQCKQFTEATDVNALAITKLDGTAKGGVVIGISDQFKIPVKYIGVGEGMNDLQLFDKKA 313 Query: 306 F 306 F Sbjct: 314 F 314 >gi|158521729|ref|YP_001529599.1| signal recognition particle-docking protein FtsY [Desulfococcus oleovorans Hxd3] gi|158510555|gb|ABW67522.1| signal recognition particle-docking protein FtsY [Desulfococcus oleovorans Hxd3] Length = 381 Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 133/297 (44%), Positives = 186/297 (62%), Gaps = 11/297 (3%) Query: 16 KLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +L +G T L + + + ++LDD E+LE+LLI +DIGV +++ L +K+ Sbjct: 85 RLRRGLEKTRRFLTTDVDKLFVPGKKLDDQTLEDLEELLITADIGVKATTELIAGL-SKQ 143 Query: 75 YAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFSHRP----HVILVVGVNGVGKTTVIG 129 A + E I +M++P L D + RP HVI+V+GVNGVGKTT IG Sbjct: 144 AAGITDPDHL----KEAIKEMILPYLEDDRPTDEATRPLATPHVIMVIGVNGVGKTTTIG 199 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KVML A DTFR+AAI+QL IWADRT AD + SD AA+AY+ + A Sbjct: 200 KLAARHRANGKKVMLVAADTFRAAAIEQLSIWADRTGADILKHRENSDPAAVAYDGVEAA 259 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ VDV+I+DTAGRLH LM + K+ R + + P APH VL VLDATTGQNA+ Q Sbjct: 260 RARGVDVVIVDTAGRLHTKVNLMEELKKIKRSMSKTMPDAPHEVLLVLDATTGQNAISQT 319 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 E+F A TG+++TK+DGTA+GG I + + IP+ ++GVGE + DL+PF + F Sbjct: 320 ELFTKAADVTGIVLTKLDGTAKGGIAINLRHSFGIPIQYIGVGEQVEDLQPFDPRAF 376 >gi|332289253|ref|YP_004420105.1| cell division protein FtsY [Gallibacterium anatis UMN179] gi|330432149|gb|AEC17208.1| cell division protein FtsY [Gallibacterium anatis UMN179] Length = 431 Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 121/295 (41%), Positives = 189/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L +G T + G + S +++DD + EELE+ L+ +DIGV KI++ L Sbjct: 127 FFSRLVQGLVKTKQNIGAGFRSLFSGKKIDDDLFEELEEQLLIADIGVPTTNKIIKNLTE 186 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + +LY ++ + +L P +P +P VIL+VGVNGVGKTT IGKL Sbjct: 187 HASRKQLKEAELLYQQLKVELATILKPNEQPLVLT-DKKPFVILMVGVNGVGKTTTIGKL 245 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +K+ G VMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + A A Sbjct: 246 AKQFQQQGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQATGADSASVLFDAMQSATA 305 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K VD+LI DTAGRL N + LM + K++RV+K+ D +APH ++ LDA TGQNA+ Q+++ Sbjct: 306 KGVDILIADTAGRLQNKNNLMDELRKIVRVMKKYDENAPHEIMLTLDAGTGQNAISQMKL 365 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + + +P+ ++GVGE I+DL PF +++F Sbjct: 366 FNEAVGITGITLTKLDGTAKGGVIFALADQFNVPIRYIGVGEKIDDLRPFNSEEF 420 >gi|134096064|ref|YP_001101139.1| signal recognition particle receptor [Herminiimonas arsenicoxydans] gi|133739967|emb|CAL63018.1| Cell division protein FtsY homolog [Herminiimonas arsenicoxydans] Length = 408 Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 130/307 (42%), Positives = 185/307 (60%), Gaps = 7/307 (2%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 A + SW+ +L G + TS +T + ++D+ + EELE L+ SD GV Q + Sbjct: 108 AEQKQSWMARLKVGLSKTS----SNLTTLFVGAKIDEDLYEELESALLMSDAGVDATQFL 163 Query: 67 VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 + EL K R K +V + L+ +ML PL KP H+P V+++ GVNG GKT Sbjct: 164 LTELKRKVRNEKLTEAAQVKTALRSLLLEMLTPLQKPLVLG-QHQPLVMMITGVNGAGKT 222 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K + V+LAAGDTFR+AA +QL +W +R + + E G D AA+A++A Sbjct: 223 TTIGKLAKHLQAHHQSVLLAAGDTFRAAAREQLTVWGERNNVTVIAQESG-DPAAVAFDA 281 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 AQA+ +V+++DTAGRL LM + K+ RV+ + APH +L ++D TGQNA Sbjct: 282 VHSAQARGTNVVMVDTAGRLPTQLHLMEELKKIKRVIAKGMSSAPHEILLIIDGNTGQNA 341 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QV+ F G TGL++TK+DGTA+GG L I IPVYF+GVGE I DL+PF A++ Sbjct: 342 LTQVKAFDDALGLTGLVVTKLDGTAKGGVLAAIARARPIPVYFIGVGEQIEDLQPFNAQE 401 Query: 306 FSAVITG 312 F + G Sbjct: 402 FVEALLG 408 >gi|223043789|ref|ZP_03613832.1| cell division protein FtsY [Staphylococcus capitis SK14] gi|222442886|gb|EEE48988.1| cell division protein FtsY [Staphylococcus capitis SK14] Length = 419 Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 127/299 (42%), Positives = 184/299 (61%), Gaps = 12/299 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K G + +E + ++I+ R++D+ E LE++LI +D+G K+ +EL T+ Sbjct: 89 KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMKLTDELRTEA 148 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTV 127 +++ + D+ E+I + ++ + S+ N + R +VIL+VGVNGVGKTT Sbjct: 149 QRRNI---QETEDLREVIVEKIVEIYHQEDDHSEAMNLE-DGRLNVILMVGVNGVGKTTT 204 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ + G KVMLAAGDTFR+ AI QLK+W DR + V GSD AA+ Y+A Sbjct: 205 IGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLKVWGDRVGVEVVSQSEGSDPAAVVYDAIN 264 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ K VD+LI DTAGRL N S LM + KM RV+ R P APH L LDATTGQNAL Sbjct: 265 AAKNKGVDILICDTAGRLQNKSNLMQELDKMKRVISRAIPDAPHEALLCLDATTGQNALS 324 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q F V +G+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 325 QARSFKDVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKLDDLQPFNPESY 383 >gi|52842876|ref|YP_096675.1| cell division membrane protein FtsY [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629987|gb|AAU28728.1| cell division membrane protein FtsY [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 368 Score = 233 bits (593), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 134/309 (43%), Positives = 189/309 (61%), Gaps = 3/309 (0%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63 K S S + KG + T +L EGI+ ++ + + + EELE LLI +D+G+ Sbjct: 54 KEPSPKESIFARFRKGLSKTRHQLGEGISRLLLGKKEISQELLEELETLLISADLGLDTT 113 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNG 121 Q ++++L K +S +Y + + +L KP + + P VIL+VGVNG Sbjct: 114 QDVLKQLNEGLARKQLSNGEAVYLTLKTNLQTILSQEEKPLSIETEDGSPFVILMVGVNG 173 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+K+ G KVMLAAGDTFR+AA++QL +W +R + G+D+A++ Sbjct: 174 AGKTTTIGKLAKQFQKQGKKVMLAAGDTFRAAAVEQLHVWGERNGIPVIAQHTGADSASV 233 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+K+DVLI DTAGRLH S LM + K+ RV+++LDP APH + VLDA+ Sbjct: 234 IFDALQAAKARKIDVLIADTAGRLHTQSNLMEELKKVKRVMQKLDPKAPHETMLVLDASI 293 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL Q + FH TG+ MTK+DGTA+GG L I IP +LGVGEGI DL PF Sbjct: 294 GQNALAQAKQFHEAVQLTGITMTKLDGTAKGGILFAIANDLGIPFRYLGVGEGIEDLRPF 353 Query: 302 VAKDFSAVI 310 A F + I Sbjct: 354 DAAQFVSAI 362 >gi|54295510|ref|YP_127925.1| hypothetical protein lpl2597 [Legionella pneumophila str. Lens] gi|53755342|emb|CAH16838.1| hypothetical protein lpl2597 [Legionella pneumophila str. Lens] Length = 355 Score = 233 bits (593), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 134/309 (43%), Positives = 189/309 (61%), Gaps = 3/309 (0%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63 K S S + KG + T +L EGI+ ++ + + + EELE LLI +D+G+ Sbjct: 41 KEPSPKESIFARFRKGLSKTRHQLGEGISRLLLGKKEISQELLEELETLLISADLGLDTT 100 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSH-RPHVILVVGVNG 121 Q ++++L K +S +Y + + +L KP + + P VIL+VGVNG Sbjct: 101 QDVLKQLNEGLARKQLSNGDAVYQTLKTNLQTILSQEEKPLSIETEDGSPFVILMVGVNG 160 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+K+ G KVMLAAGDTFR+AA++QL +W +R + G+D+A++ Sbjct: 161 AGKTTTIGKLAKQFQKQGKKVMLAAGDTFRAAAVEQLHVWGERNGIPVIAQHTGADSASV 220 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+K+DVLI DTAGRLH S LM + K+ RV+++LDP APH + VLDA+ Sbjct: 221 IFDALQAAKARKIDVLIADTAGRLHTQSNLMEELKKVKRVMQKLDPKAPHETMLVLDASI 280 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL Q + FH TG+ MTK+DGTA+GG L I IP +LGVGEGI DL PF Sbjct: 281 GQNALAQAKQFHEAVQLTGITMTKLDGTAKGGILFAIANDLGIPFRYLGVGEGIEDLRPF 340 Query: 302 VAKDFSAVI 310 A F + I Sbjct: 341 DAAQFVSAI 349 >gi|54298660|ref|YP_125029.1| hypothetical protein lpp2724 [Legionella pneumophila str. Paris] gi|53752445|emb|CAH13877.1| hypothetical protein lpp2724 [Legionella pneumophila str. Paris] Length = 355 Score = 233 bits (593), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 133/309 (43%), Positives = 189/309 (61%), Gaps = 3/309 (0%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63 K S S + KG + T +L EGI+ ++ + + + EELE LLI +D+G+ Sbjct: 41 KEPSPKESIFARFRKGLSKTRHQLGEGISRLLLGKKEISQELLEELETLLISADLGLDTT 100 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSH-RPHVILVVGVNG 121 Q ++++L K +S +Y + + +L KP + + P VIL+VGVNG Sbjct: 101 QDVLKQLNEGLARKQLSNGEAVYQTLKTNLQTILSQEEKPLSIETEDGSPFVILMVGVNG 160 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+K+ G +VMLAAGDTFR+AA++QL +W +R + G+D+A++ Sbjct: 161 AGKTTTIGKLAKQFQKQGKRVMLAAGDTFRAAAVEQLHVWGERNGIPVIAQHTGADSASV 220 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+K+DVLI DTAGRLH S LM + K+ RV+++LDP APH + VLDA+ Sbjct: 221 IFDALQAAKARKIDVLIADTAGRLHTQSNLMEELKKVKRVMQKLDPKAPHETMLVLDASI 280 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL Q + FH TG+ MTK+DGTA+GG L I IP +LGVGEGI DL PF Sbjct: 281 GQNALAQAKQFHEAVQLTGITMTKLDGTAKGGILFAIANDLGIPFRYLGVGEGIEDLRPF 340 Query: 302 VAKDFSAVI 310 A F + I Sbjct: 341 DAAQFVSAI 349 >gi|237747431|ref|ZP_04577911.1| signal recognition particle receptor [Oxalobacter formigenes HOxBLS] gi|229378782|gb|EEO28873.1| signal recognition particle receptor [Oxalobacter formigenes HOxBLS] Length = 354 Score = 233 bits (593), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 125/297 (42%), Positives = 186/297 (62%), Gaps = 8/297 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW+ +L G A TS L +I +D+ + EELE LI SD+G+ + +++ L Sbjct: 60 SWLSRLKAGLAKTSANL-----NIFGGTTIDEELFEELETALIVSDVGLPATEYLLDSLR 114 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + + + ++++L+ +L+PL K H P ++++ GVNG GKTT IGK Sbjct: 115 KKVKEERLTHPAEIKTELAKLLTDLLIPLQKSLEIG-RHTPLIVMMAGVNGAGKTTTIGK 173 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + + V+LAAGDTFR+AA +QL +W DR + E G D AA+A++A + A+ Sbjct: 174 LAKHLQNNDQTVLLAAGDTFRAAAREQLAVWGDRNKITVIAQESG-DPAAVAFDAVQSAK 232 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 AK ++V+++DTAGRL LM + K+ RV+ + APH ++ V+D TGQNAL QV+ Sbjct: 233 AKGINVVMVDTAGRLPTQLHLMEELRKVKRVIGKGMEEAPHEIILVIDGNTGQNALAQVK 292 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 F G TGLI+TK+DGT +GG L I H +PVYF+GVGE I+DL+PFVA++FS Sbjct: 293 AFDEALGLTGLIVTKLDGTPKGGILAAIAKNHPVPVYFIGVGEKIDDLQPFVAEEFS 349 >gi|314933413|ref|ZP_07840778.1| cell division protein FtsY [Staphylococcus caprae C87] gi|313653563|gb|EFS17320.1| cell division protein FtsY [Staphylococcus caprae C87] Length = 419 Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 127/299 (42%), Positives = 184/299 (61%), Gaps = 12/299 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K G + +E + ++I+ R++D+ E LE++LI +D+G K+ +EL T+ Sbjct: 89 KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMKLTDELRTEA 148 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTV 127 +++ + D+ E+I + ++ + S+ N + R +VIL+VGVNGVGKTT Sbjct: 149 QRRNI---QETEDLREVIVEKIVEIYHQEDDHSEAMNLE-DGRLNVILMVGVNGVGKTTT 204 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ + G KVMLAAGDTFR+ AI QLK+W DR + V GSD AA+ Y+A Sbjct: 205 IGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLKVWGDRVGVEVVSQSEGSDPAAVVYDAIN 264 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ K VD+LI DTAGRL N S LM + KM RV+ R P APH L LDATTGQNAL Sbjct: 265 AAKNKGVDILICDTAGRLQNKSNLMQELDKMKRVISRSIPDAPHEALLCLDATTGQNALS 324 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q F V +G+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 325 QARSFKDVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKLDDLQPFNPESY 383 >gi|91775086|ref|YP_544842.1| signal recognition particle-docking protein FtsY [Methylobacillus flagellatus KT] gi|91709073|gb|ABE49001.1| signal recognition particle-docking protein FtsY [Methylobacillus flagellatus KT] Length = 335 Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 120/298 (40%), Positives = 189/298 (63%), Gaps = 3/298 (1%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 SLSW +L + A T + + + + ++D+ V EELE +L+ SD+G+A Q ++E+ Sbjct: 34 SLSWAERLKRSLAKTRSQWGQQLARLFGGGKIDENVYEELETILLTSDVGIAATQALLEQ 93 Query: 70 LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + T+ +++S L + + + + ++L PL KP + + +P VI++ GVNG GKTT I Sbjct: 94 IRTRVKRQNLSDTTQLKEALKQSLLELLTPLEKPLD-TTTAQPFVIMLAGVNGAGKTTTI 152 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ G V++AAGDTFR+AA +QL+ W +R + V E G D AA+ ++A Sbjct: 153 GKLANLFQAQGKSVLIAAGDTFRAAAREQLQAWGERNNVHVVAQESG-DPAAVIFDAVNS 211 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +D+++ DTAGRL LM I K+ RV+ + P APH VL VLD+ TGQNA+ Q Sbjct: 212 AKARGIDIVLADTAGRLPTQLNLMEEIRKVQRVIDKALPGAPHEVLLVLDSNTGQNAVTQ 271 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 V+ F G TGL+++K+DGTA+GG + I + +P+ ++G+GE I+DL PF A +F Sbjct: 272 VKAFDDALGVTGLVLSKLDGTAKGGVIAAIAQSRPVPIRYIGIGESIDDLRPFKASEF 329 >gi|169350200|ref|ZP_02867138.1| hypothetical protein CLOSPI_00944 [Clostridium spiroforme DSM 1552] gi|169292983|gb|EDS75116.1| hypothetical protein CLOSPI_00944 [Clostridium spiroforme DSM 1552] Length = 327 Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 129/306 (42%), Positives = 191/306 (62%), Gaps = 11/306 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K +S K G +++ + I ++ + R +++ EELE++LI SD+GV++ Sbjct: 9 EKFVGKSAKQNEKYVAGLDRSNVTFSDRINELAARFREINEDYFEELENILIMSDVGVSM 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM------PLSKPFNWDFSHRPHVILV 116 KIV+E+ + ++++ + + D+ ++ KM + ++ N+ S VIL+ Sbjct: 69 VMKIVDEIKNEVRIQNITDPKQINDI--IVDKMFVIYANDSVMTTKINY-ASEGLTVILM 125 Query: 117 VGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNG GKTT IGKL+ ++ D G KVM+AAGDTFR+ AIDQL +WADR + V G Sbjct: 126 VGVNGAGKTTTIGKLANRIVQDEGKKVMVAAGDTFRAGAIDQLAVWADRVGVEIVKGREG 185 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 D +A+ ++A KQA+ K VDVLI DTAGRL N LM + KM R++KR P APH L Sbjct: 186 GDPSAVVFDALKQAKEKNVDVLICDTAGRLQNKVNLMKELEKMNRIIKREVPDAPHETLL 245 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DATTGQN + Q F + TGL++TKMDGTA+GG ++ I IPV F+G+GEG+ Sbjct: 246 VIDATTGQNGVSQAVEFSKITDITGLVLTKMDGTAKGGIVLSIKDQLNIPVKFIGLGEGV 305 Query: 296 NDLEPF 301 +DL+ F Sbjct: 306 DDLQEF 311 >gi|114566315|ref|YP_753469.1| signal recognition particle GTPase-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337250|gb|ABI68098.1| signal recognition particle-docking protein FtsY [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 305 Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 131/299 (43%), Positives = 187/299 (62%), Gaps = 7/299 (2%) Query: 16 KLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 KL KG + T I ++ SS++LDD EELE++LI++D+GV ++V+ + K+ Sbjct: 3 KLKKGLSKTRENTIGKIEALVKSSKKLDDDFWEELEEILIQADVGVNTTIELVDNI--KQ 60 Query: 75 YAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 AK + VL + + + K+L + P N VILVVGVNG GKTT I KL Sbjct: 61 AAKKQKMHDSSEVLELIKDEVRKLLEYNNVPLNIP-ERELAVILVVGVNGAGKTTSIAKL 119 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + + G KV+L A DTFR+AAIDQL IWADR + + + GSD A+ ++A A+A Sbjct: 120 AYRFHEEGKKVLLGAADTFRAAAIDQLNIWADRVGVELIKHQEGSDPGAVVFDAIHAAKA 179 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + D+LIIDTAGRL N + LM I K+ +++R P APH VL VLDATTGQNA+ Q ++ Sbjct: 180 RHADILIIDTAGRLQNKANLMKEISKIKNIIQREIPEAPHEVLLVLDATTGQNAISQAKI 239 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI++K+DGTA+GG ++ + KIPV +G+GEG+ DL F + F+ + Sbjct: 240 FEEATGVTGLILSKLDGTAKGGIILAVEKELKIPVKLVGIGEGLEDLRDFSPQIFTEAL 298 >gi|68171797|ref|ZP_00545138.1| Cell division transporter substrate-binding protein FtsY [Ehrlichia chaffeensis str. Sapulpa] gi|88657689|ref|YP_507895.1| signal recognition particle-docking protein FtsY [Ehrlichia chaffeensis str. Arkansas] gi|67998779|gb|EAM85490.1| Cell division transporter substrate-binding protein FtsY [Ehrlichia chaffeensis str. Sapulpa] gi|88599146|gb|ABD44615.1| signal recognition particle-docking protein FtsY [Ehrlichia chaffeensis str. Arkansas] Length = 310 Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 129/306 (42%), Positives = 203/306 (66%), Gaps = 11/306 (3%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + + KG TS KL +GI I SS +++D EEL++LLI +D+G A + ++L Sbjct: 9 FFSNIKKGLFKTSSKLSDGIKKIFSSGKKVDQETLEELKELLITADVGYDNASLLTQKLA 68 Query: 72 TKRYAK--DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + ++ + D +V++ L +E I +L+ + KP + +++PHVI+V G NG GKTT IG Sbjct: 69 STKFNEMDDNTVKQKL---AESIENILLQVEKPLS--INNKPHVIMVCGTNGNGKTTTIG 123 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + + G KV++AA DTFR+AA +QL +W+ + + V G+DAA++AY+A +QA Sbjct: 124 KLAHRFKNTGKKVLVAACDTFRAAATEQLIVWSQKVNFPVVTGNQGADAASIAYQAMQQA 183 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 ++ DVL+IDTAGRLHN+ LM + K+ R++ + D +APH V+ +LDATTGQNA+ QV Sbjct: 184 LNEQTDVLLIDTAGRLHNHKNLMEELAKIRRIINKHDNNAPHDVILILDATTGQNAVNQV 243 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F +GLI+TK+DGTA+GG +I I +K+ ++ +G+GE + L+ F AK+F+A Sbjct: 244 DAFLQFVNISGLIITKLDGTAKGGVVIRIAQKYKLNIHAIGIGESVEQLQDFSAKEFAA- 302 Query: 310 ITGCLD 315 G LD Sbjct: 303 --GLLD 306 >gi|327395607|dbj|BAK13029.1| cell division protein FtsY [Pantoea ananatis AJ13355] Length = 587 Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV ++I+ L Sbjct: 285 FFARLKRSLVKTRQNLGSGFIGLFRGKKIDDELFEELEEQLLIADVGVETTRRIITSLTQ 344 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + +L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 345 HADRKQLRDAEALYGLLKTEMADILAKVEEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 403 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + V G+D+A++ ++A + A++ Sbjct: 404 ARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNISVVAQHTGADSASVIFDAIQAAKS 463 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K+ RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 464 RGVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDEQAPHEVMLTIDASTGQNAISQAKL 523 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGEGI DL PF A+DF Sbjct: 524 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGEGIEDLRPFKAEDF 578 >gi|313112008|ref|ZP_07797795.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa 39016] gi|310884297|gb|EFQ42891.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa 39016] Length = 288 Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 121/256 (47%), Positives = 171/256 (66%), Gaps = 3/256 (1%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYA-KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHR 110 L+ +D+GV IV+ L TKR A K+++ LY + E + +L P+ +P D + Sbjct: 23 LLTADVGVEATTLIVQNL-TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVARE 81 Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P+VILVVGVNGVGKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + Sbjct: 82 PYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVI 141 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 G+D+A++ ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD AP Sbjct: 142 AQHTGADSASVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAP 201 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 H VL VLDA TGQNA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++G Sbjct: 202 HEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIG 261 Query: 291 VGEGINDLEPFVAKDF 306 VGEGI+DL F A F Sbjct: 262 VGEGIDDLRTFEADAF 277 >gi|225025030|ref|ZP_03714222.1| hypothetical protein EIKCOROL_01919 [Eikenella corrodens ATCC 23834] gi|224942260|gb|EEG23469.1| hypothetical protein EIKCOROL_01919 [Eikenella corrodens ATCC 23834] Length = 480 Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 121/299 (40%), Positives = 187/299 (62%), Gaps = 6/299 (2%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G + + ++ + + + ++D+ + EELE +L+ SD+G+ + ++EE+ Sbjct: 180 LGWAARLKQGLSKSRQQMAKSLAGVFGGGKIDEDLYEELETVLLTSDMGIEATEHLMEEV 239 Query: 71 LTK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 + R KD + + + E I++++ PL +P RP VI++ G+NG GKTT Sbjct: 240 RQRVSLRGLKDG--EELRGALKEAIYELIKPLEQPLALPADKRPFVIMLAGINGAGKTTS 297 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+K G V+LAAGDTFR+AA +QL W +R V S+ D+AA+ ++A + Sbjct: 298 IGKLAKYFQAQGKSVLLAAGDTFRAAAREQLAEWGERNGVT-VISQASGDSAAVCFDAVE 356 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+A+ +D+++ DTAGRL + LM I K+ RVL++ P APH ++ VLDA GQNA+ Sbjct: 357 AAKARGIDIVLADTAGRLPTQTHLMEEIKKVKRVLQKSMPDAPHEIVVVLDANIGQNAVN 416 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QV F G TGLI+TK+DGTA+GG L + +PV F+GVGEGI+DL PF A++F Sbjct: 417 QVIAFDDALGLTGLIVTKLDGTAKGGVLAALASRRPVPVRFIGVGEGIDDLRPFNAREF 475 >gi|62182070|ref|YP_218487.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129703|gb|AAX67406.1| GTPase domain of cell division membrane protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716558|gb|EFZ08129.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 491 Score = 232 bits (592), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 123/295 (41%), Positives = 186/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+G +KI+ L Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGGETTRKIIANLTE 248 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482 >gi|291619278|ref|YP_003522020.1| FtsY [Pantoea ananatis LMG 20103] gi|291154308|gb|ADD78892.1| FtsY [Pantoea ananatis LMG 20103] Length = 637 Score = 232 bits (592), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV ++I+ L Sbjct: 335 FFARLKRSLVKTRQNLGSGFIGLFRGKKIDDELFEELEEQLLIADVGVETTRRIITSLTQ 394 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + +L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 395 HADRKQLRDAEALYGLLKTEMADILAKVEEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 453 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + V G+D+A++ ++A + A++ Sbjct: 454 ARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNISVVAQHTGADSASVIFDAIQAAKS 513 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N S LM + K+ RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 514 RGVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDEQAPHEVMLTIDASTGQNAISQAKL 573 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGEGI DL PF A+DF Sbjct: 574 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGEGIEDLRPFKAEDF 628 >gi|300776242|ref|ZP_07086100.1| cell division protein FtsY [Chryseobacterium gleum ATCC 35910] gi|300501752|gb|EFK32892.1| cell division protein FtsY [Chryseobacterium gleum ATCC 35910] Length = 317 Score = 232 bits (592), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 131/310 (42%), Positives = 191/310 (61%), Gaps = 15/310 (4%) Query: 11 LSWIRK---------LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGV 60 +SW + L KG +S E +T ++ ++DD V ++LE++LI SD+G Sbjct: 1 MSWFKNIFKKEEKETLDKGLEKSSQGFFEKMTKAVVGKSKVDDEVLDDLEEVLIASDVGA 60 Query: 61 AVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLM--PLSKPFNWDFSHRPHVILV 116 + KI+E + +R A+D V V + + E I +L+ P + N D S +P+VI+V Sbjct: 61 STTIKIIERI-EERVARDKYVGVNELDKILREEISGLLLENPHAGTGNIDTSKKPYVIMV 119 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGKL+ + G KV+L A DTFR+AA+DQL IW++R V +GS Sbjct: 120 VGVNGVGKTTTIGKLAHQFKSEGKKVVLGAADTFRAAAVDQLTIWSERVDVPIVKQGMGS 179 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D A++A++ + A A+ DV+IIDTAGRLHN LM + K+ RV++++ P APH +L V Sbjct: 180 DPASVAFDTVQSAVAQNADVVIIDTAGRLHNKINLMNELSKIKRVMQKVIPDAPHEILLV 239 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LD +TGQNA Q + F A L +TK+DGTA+GG +I I +IPV ++GVGE + Sbjct: 240 LDGSTGQNAFEQAKQFTAATEVNALAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEKMQ 299 Query: 297 DLEPFVAKDF 306 DL+ F +F Sbjct: 300 DLQLFNGTEF 309 >gi|161831407|ref|YP_001597722.1| signal recognition particle-docking protein FtsY [Coxiella burnetii RSA 331] gi|161763274|gb|ABX78916.1| signal recognition particle-docking protein FtsY [Coxiella burnetii RSA 331] Length = 324 Score = 232 bits (592), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 128/310 (41%), Positives = 194/310 (62%), Gaps = 4/310 (1%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVA 61 N + + W+ +L + T +L +G+++++ ++ +D + EELE +L+ +DIG+ Sbjct: 14 NNETSKPKKGWLGRLNESLKRTRSRLTDGLSNLVLGKKTIDASLLEELEMILLSADIGIE 73 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 Q I+ L + K +S + L D ++ + +L P K + + S P VIL VGVN Sbjct: 74 ATQSILNNLSQQVARKSLSDPKALIDALKIELLNILEPCQK--HLEISASPFVILTVGVN 131 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT I KL+ +VMLAAGDTFR+AAI+QL+ W R +A + + G+D+A+ Sbjct: 132 GVGKTTTIAKLAHFYQSQKKRVMLAAGDTFRAAAIEQLQTWGQRNNAPVIAQQPGADSAS 191 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + Y+A + A A+ D+LI DTAGRLH S LM + K+ RV+K+++P APH L LDA Sbjct: 192 VIYDAMEAATARHYDLLIADTAGRLHTQSHLMDELAKIKRVMKKINPDAPHETLLALDAG 251 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNA+ Q E FH G TG+ +TK+DGTA+GG + I ++P+ F+G+GE I DL+P Sbjct: 252 TGQNAINQAEQFHEHIGLTGIAITKLDGTAKGGVIFAIAKKMQLPIRFIGMGEKIEDLKP 311 Query: 301 FVAKDFSAVI 310 F AK+F A + Sbjct: 312 FNAKEFIAAL 321 >gi|152980422|ref|YP_001354829.1| signal recognition particle receptor [Janthinobacterium sp. Marseille] gi|151280499|gb|ABR88909.1| signal recognition particle receptor [Janthinobacterium sp. Marseille] Length = 419 Score = 232 bits (592), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 130/307 (42%), Positives = 184/307 (59%), Gaps = 7/307 (2%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 A + SW+ +L G + TS L T + ++DD + EELE L+ SD GV Q + Sbjct: 119 AEQKQSWMARLKVGLSKTSTNL----TTLFVGAKIDDDLYEELESALLMSDAGVDATQFL 174 Query: 67 VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 ++ L K + K +V + L+ +ML PL KP H+P V+++ GVNG GKT Sbjct: 175 LDALKRKVKNEKLTEAAQVKTALRSLLLEMLTPLQKPLVLG-QHQPLVMMITGVNGAGKT 233 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K + V+LAAGDTFR+AA +QL +W R + + E G D AA+A++A Sbjct: 234 TTIGKLAKHLQAHNQSVLLAAGDTFRAAAREQLTVWGQRNNVTVIAQESG-DPAAVAFDA 292 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 AQA+ +V+++DTAGRL LM + K+ RV+ + APH +L ++D TGQNA Sbjct: 293 VHSAQARGTNVVMVDTAGRLPTQLHLMEELKKVKRVMAKGMASAPHEILLIIDGNTGQNA 352 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QV+ F G TGL++TK+DGTA+GG L I IPVYF+GVGE I DL+PF A++ Sbjct: 353 LTQVKAFDDALGLTGLVVTKLDGTAKGGVLAAIARARPIPVYFIGVGEQIEDLQPFNAQE 412 Query: 306 FSAVITG 312 F + G Sbjct: 413 FVEALLG 419 >gi|153209355|ref|ZP_01947362.1| signal recognition particle-docking protein FtsY [Coxiella burnetii 'MSU Goat Q177'] gi|212217698|ref|YP_002304485.1| cell division protein [Coxiella burnetii CbuK_Q154] gi|120575388|gb|EAX32012.1| signal recognition particle-docking protein FtsY [Coxiella burnetii 'MSU Goat Q177'] gi|212011960|gb|ACJ19340.1| cell division protein [Coxiella burnetii CbuK_Q154] Length = 324 Score = 232 bits (592), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 129/310 (41%), Positives = 194/310 (62%), Gaps = 4/310 (1%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVA 61 N + + W+ +L + T +L +G+++++ ++ +D + EELE +L+ +DIG+ Sbjct: 14 NNETSKPKKGWLGRLNESLKRTRSRLTDGLSNLVLGKKTIDASLLEELEMILLSADIGIE 73 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 Q I+ L + K +S + L D ++ + +L P K + + S P VIL VGVN Sbjct: 74 ATQSILNNLSQQVSRKSLSDPKALIDALKIELLNILEPCQK--HLEISASPFVILTVGVN 131 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT I KL+ +VMLAAGDTFR+AAI+QL+ W R +A + G+D+A+ Sbjct: 132 GVGKTTTIAKLAHFYQSQKKRVMLAAGDTFRAAAIEQLQTWGQRNNAPVSAQQPGADSAS 191 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + Y+A + A A+ D+LI DTAGRLH S LM + K+ RV+K+++P APH L VLDA Sbjct: 192 VIYDAMEAATARHYDLLIADTAGRLHTQSHLMDELAKIKRVMKKINPDAPHETLLVLDAG 251 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNA+ Q E FH G TG+ +TK+DGTA+GG + I ++P+ F+G+GE I DL+P Sbjct: 252 TGQNAINQAEQFHEHIGLTGIAITKLDGTAKGGVIFAIAKKMQLPIRFIGMGEKIEDLKP 311 Query: 301 FVAKDFSAVI 310 F AK+F A + Sbjct: 312 FNAKEFIAAL 321 >gi|226313207|ref|YP_002773101.1| cell division protein FtsY [Brevibacillus brevis NBRC 100599] gi|226096155|dbj|BAH44597.1| probable cell division protein FtsY [Brevibacillus brevis NBRC 100599] Length = 335 Score = 232 bits (592), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 137/325 (42%), Positives = 201/325 (61%), Gaps = 19/325 (5%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64 + +S +K T G A T L E + D++ +++DD +ELE++LI SD+GV Sbjct: 11 IVQKSEEVTQKFTDGLAKTRDLLVEKVEDLVRRYKKIDDDFFDELEEILITSDVGVNTVM 70 Query: 65 KIVEELLTKRYAKDVSVQRV--LYDVSELIHKMLMPLSKPFNWDFSH--------RPHVI 114 +++++L +V Q++ D+ ++ + L+ L K N D + R +VI Sbjct: 71 ELIDDLRI-----EVRKQKIENAIDLQPILSEKLVALLK--NDDAADTALNVEDGRLNVI 123 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 L VGVNGVGKTT IGK++ KV+LAAGDTFR+AAI+QL++W +R D + + Sbjct: 124 LFVGVNGVGKTTTIGKMAHMFKQQDKKVLLAAGDTFRAAAIEQLEVWGERVGVDVIKQQQ 183 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 GSD AA+ Y+A + A++++VDVL+ DTAGRL N LM + K+ RVL+R P APH VL Sbjct: 184 GSDPAAVIYDAIQAAKSRQVDVLLCDTAGRLQNKVNLMEELAKVHRVLQRELPGAPHEVL 243 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VLDATTGQNAL Q + F AG TGL++TK+DGTA+GG +I I IPV ++G+GE Sbjct: 244 LVLDATTGQNALSQAKTFGQSAGVTGLVLTKLDGTAKGGIVIAIRNELNIPVKYVGLGER 303 Query: 295 INDLEPFVAKDF-SAVITGCLDYGE 318 ++DL+ F + F A+ G + E Sbjct: 304 MDDLQQFDPEQFVHALFAGLIQKDE 328 >gi|238650586|ref|YP_002916438.1| cell division protein [Rickettsia peacockii str. Rustic] gi|238624684|gb|ACR47390.1| cell division protein [Rickettsia peacockii str. Rustic] Length = 303 Score = 232 bits (592), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 132/303 (43%), Positives = 190/303 (62%), Gaps = 3/303 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 +S KL + + TS K+ EGI I ++LD EELE+LLI SD+ V V I+EE Sbjct: 2 ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAETLEELEELLISSDMSVLVVTNIIEEF 61 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++ K++ V +++LI + L PF ++ +VILV GVNG GKTT IGK Sbjct: 62 KKVKFDKEIDSDTVKEALAKLIEQQLSKSEIPFTLS-ENKLNVILVCGVNGAGKTTTIGK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ S G KV +AA DTFR+AA++QL WADR + + E +D A++AY +++ Sbjct: 121 LAAMYSAQGKKVAVAACDTFRAAAVNQLSTWADRANVLLITGEESADPASVAYRGMEESI 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249 + +D+L IDTAGRLHN LM + K+++V+K+LD +AP HSVL V+DA TGQN QV Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVL-VIDAITGQNTYNQV 239 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F+ TGLI+TK+DG+A+ G ++ +V +P+YF+G+GE I DL+ F DF+ Sbjct: 240 EHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNQHDFARN 299 Query: 310 ITG 312 I G Sbjct: 300 IVG 302 >gi|327404681|ref|YP_004345519.1| signal recognition particle-docking protein FtsY [Fluviicola taffensis DSM 16823] gi|327320189|gb|AEA44681.1| signal recognition particle-docking protein FtsY [Fluviicola taffensis DSM 16823] Length = 317 Score = 232 bits (592), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 136/315 (43%), Positives = 190/315 (60%), Gaps = 14/315 (4%) Query: 11 LSWIRK-----LTKGFASTSLKLKEGIT-DIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 W K L KG T +T ++ R+DD V +ELE++LI SD+GV Sbjct: 4 FGWFSKENKETLDKGLEKTKESFFGKLTRSLVGKSRVDDEVLDELEEILISSDVGVNTTL 63 Query: 65 KIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMPLSK--PFNWDF---SHRPHVILVV 117 KI++ + +R +KD V + + E I +L P + + PHVI+VV Sbjct: 64 KIIDRI-NERVSKDKYVGTDELNKVLKEEIANLLSENDSDGPSEYTIPAHNGNPHVIMVV 122 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 GVNGVGKTT IGKL+ + +G KV+L A DTFR+AA+DQL IW++R V +G+D Sbjct: 123 GVNGVGKTTSIGKLANQFKKSGKKVVLGAADTFRAAAVDQLIIWSERVGVPIVHQGMGAD 182 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 A++A++A A+A+ DV+IIDTAGRLHN LM + K+ RV++++ P APH +L VL Sbjct: 183 PASVAFDALSSAKAQGADVVIIDTAGRLHNKVNLMNELSKIKRVMEKVIPDAPHEILLVL 242 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 D +TGQNA Q + F TGLI+TK+DGTA+GG +I I IPV F+GVGEGI D Sbjct: 243 DGSTGQNAYEQAKQFALATSLTGLIITKLDGTAKGGVVIGISDQMSIPVRFIGVGEGIED 302 Query: 298 LEPFVAKDFSAVITG 312 L+ F ++F + I G Sbjct: 303 LQVFHKEEFVSSIFG 317 >gi|87244958|gb|ABD34789.1| secA-dependent peptide secretory protein [Rickettsia raoultii] gi|88595845|gb|ABD43171.1| FtsY [Rickettsia raoultii] Length = 303 Score = 232 bits (591), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 131/303 (43%), Positives = 191/303 (63%), Gaps = 3/303 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 +S KL + + TS K+ EGI I ++LD EELE+LLI SD+ V+V I+EE Sbjct: 2 ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAETLEELEELLISSDMSVSVVTNIIEEF 61 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++ K++ V +++LI + L PF ++ +VILV GVNG GKTT IGK Sbjct: 62 KKVKFDKEIDSDTVKAALAKLIEQQLSKSEIPFTLS-ENKLNVILVCGVNGAGKTTTIGK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ S G KV + A DTFR+AA++QL WADR +A + E +D A++AY +++ Sbjct: 121 LAAMYSAQGKKVAVTACDTFRAAAVNQLSTWADRANALLITGEESADPASVAYRGMEESI 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249 + +D+L IDTAGRLHN LM + K+++V+K+LD +AP HSVL V+DA TGQN QV Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVL-VIDAITGQNTYNQV 239 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F+ TGLI+TK+DG+A+ G ++ +V +P+YF+G+GE I DL+ F DF+ Sbjct: 240 EHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNRHDFARN 299 Query: 310 ITG 312 + G Sbjct: 300 LVG 302 >gi|227539202|ref|ZP_03969251.1| signal recognition particle-docking protein FtsY [Sphingobacterium spiritivorum ATCC 33300] gi|300770676|ref|ZP_07080555.1| cell division protein FtsY [Sphingobacterium spiritivorum ATCC 33861] gi|227240884|gb|EEI90899.1| signal recognition particle-docking protein FtsY [Sphingobacterium spiritivorum ATCC 33300] gi|300763152|gb|EFK59969.1| cell division protein FtsY [Sphingobacterium spiritivorum ATCC 33861] Length = 324 Score = 232 bits (591), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 131/298 (43%), Positives = 187/298 (62%), Gaps = 11/298 (3%) Query: 17 LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG T IT ++ +DD V +ELE++L+ SD+GV KI++ + R Sbjct: 20 LDKGLEKTKEGFLSKITKAVVGKSTVDDDVLDELEEILVTSDVGVTTTLKIIDRI-QARV 78 Query: 76 AKDVSVQRVLYDVSELIHKMLMPL-----SKPF-NWDF-SHRPHVILVVGVNGVGKTTVI 128 AKD + +++ L+ + L S F N+++ +H+P+VI+VVGVNGVGKTT I Sbjct: 79 AKDKYINT--SELNNLLKDEIQALLAENNSSDFENFEYGNHKPYVIMVVGVNGVGKTTTI 136 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ ++ AG KV+L A DTFR+AA+DQLK+W +R V +GSD A++A++ K Sbjct: 137 GKLAHQLKAAGNKVVLGAADTFRAAAVDQLKLWGERVGVRVVAQAMGSDPASVAFDTIKS 196 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A + DV IIDTAGRLHN LM +GK+ V++++ P APH +L VLDA+TGQNA+ Q Sbjct: 197 AVSNGDDVAIIDTAGRLHNKVGLMNELGKIKNVMQKVIPGAPHEILLVLDASTGQNAIEQ 256 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F L +TK+DGTA+GG +I I KIPV ++GVGE I+DL+ F K+F Sbjct: 257 CTQFTQATDVNALALTKLDGTAKGGVVIGISDQFKIPVKYIGVGEKIDDLQLFNKKEF 314 >gi|254282221|ref|ZP_04957189.1| signal recognition particle-docking protein FtsY [gamma proteobacterium NOR51-B] gi|219678424|gb|EED34773.1| signal recognition particle-docking protein FtsY [gamma proteobacterium NOR51-B] Length = 374 Score = 232 bits (591), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 123/300 (41%), Positives = 189/300 (63%), Gaps = 3/300 (1%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 E + +L +G T + EG+ ++ + + LD + E LE L++SD+G+ +++ Sbjct: 62 EQTGFYTRLKRGLGRTGSQFAEGLGNLFLGKKALDADLLEALEAQLLQSDLGIEATSRVI 121 Query: 68 EELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 ++L + K+++ + V+ V + ++ P +P + + +P VILVVGVNG GKTT Sbjct: 122 DDLTARVSRKELADAEAVMAAVRASLLDIIEPCEQPLSVE-GKKPFVILVVGVNGAGKTT 180 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGK++ + G KV+LAAGDTFR+AA++QL+ W +R V G+D+A++ ++ Sbjct: 181 TIGKMANRFQREGKKVILAAGDTFRAAAVEQLQTWGERHGVPVVAQHTGADSASVLFDGL 240 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+A+ DVLI DTAGRL N S LM + K++RV+++LDP APH L VLDA TGQNA+ Sbjct: 241 EAARARGADVLIADTAGRLQNKSHLMDELEKVVRVMRKLDPDAPHETLLVLDAGTGQNAV 300 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q F A G +G+ +TK+DGTARGG I + P+ F+G+GEG DL PFVA+DF Sbjct: 301 SQAVQFDAAIGVSGIALTKLDGTARGGVTFAIAERLRRPIRFIGIGEGAEDLRPFVARDF 360 >gi|87244956|gb|ABD34788.1| secA-dependent peptide secretory protein [Rickettsia raoultii] gi|88595847|gb|ABD43172.1| FtsY [Rickettsia raoultii] Length = 303 Score = 232 bits (591), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 131/303 (43%), Positives = 191/303 (63%), Gaps = 3/303 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 +S KL + + TS K+ EGI I ++LD EELE+LLI SD+ V+V I+EE Sbjct: 2 ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAETLEELEELLISSDMSVSVVTNIIEEF 61 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++ K++ V +++LI + L PF ++ +VILV GVNG GKTT IGK Sbjct: 62 KKVKFDKEIDSDTVKEALAKLIEQQLSKSEIPFTLS-KNKLNVILVCGVNGAGKTTTIGK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ S G KV + A DTFR+AA++QL WADR +A + E +D A++AY +++ Sbjct: 121 LAAMYSAQGKKVAVTACDTFRAAAVNQLSTWADRANALLITGEESADPASVAYRGMEESI 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249 + +D+L IDTAGRLHN LM + K+++V+K+LD +AP HSVL V+DA TGQN QV Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVL-VIDAITGQNTYNQV 239 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F+ TGLI+TK+DG+A+ G ++ +V +P+YF+G+GE I DL+ F DF+ Sbjct: 240 EHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNRHDFARN 299 Query: 310 ITG 312 + G Sbjct: 300 LVG 302 >gi|224476347|ref|YP_002633953.1| putative cell division protein FtsY [Staphylococcus carnosus subsp. carnosus TM300] gi|222420954|emb|CAL27768.1| putative cell division protein FtsY [Staphylococcus carnosus subsp. carnosus TM300] Length = 422 Score = 232 bits (591), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 126/301 (41%), Positives = 185/301 (61%), Gaps = 16/301 (5%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K +G + +E + ++I+ R +D+ E LE++LI +D+G ++V+EL T+ Sbjct: 88 KFKQGLEKSRENFQEQLNNLIARYRTVDEDFFEALEEMLITADVGFNTVMELVDELRTE- 146 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---------RPHVILVVGVNGVGKT 125 + +R + + S+L ++ + + + D H R +VIL+VGVNGVGKT Sbjct: 147 -----AQRRNIKETSDLKEVIVEKIVEIYEQDDDHSEVMNLEDGRLNVILMVGVNGVGKT 201 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+ + G KVMLAAGDTFR+ AI+QLK+W +R D V GSD AA+ Y+A Sbjct: 202 TTIGKLAHRYKAEGKKVMLAAGDTFRAGAINQLKVWGERVGVDVVSQSEGSDPAAVMYDA 261 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+ K VD+LI DTAGRL N + LM + KM V+ + P APH VL LDATTGQNA Sbjct: 262 INAAKHKDVDILICDTAGRLQNKANLMNELEKMKHVIGKAVPDAPHEVLLCLDATTGQNA 321 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L Q F V TG+++TK+DGTA+GG ++ I +IPV ++G+GE ++DL+PF + Sbjct: 322 LSQARSFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELRIPVKYVGLGEKLDDLQPFNPES 381 Query: 306 F 306 + Sbjct: 382 Y 382 >gi|254373505|ref|ZP_04988992.1| signal recognition particle receptor FtsY [Francisella tularensis subsp. novicida GA99-3549] gi|151571230|gb|EDN36884.1| signal recognition particle receptor FtsY [Francisella novicida GA99-3549] Length = 343 Score = 232 bits (591), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 125/302 (41%), Positives = 192/302 (63%), Gaps = 2/302 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +L G + T+ K G++ I+ +++ D+ + E++E L+ +D+GV +IV L K Sbjct: 42 RLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEATDEIVAYLRDKV 101 Query: 75 YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 ++ L + + + ++++P KP D P VILVVGVNGVGKTT IGKL+K Sbjct: 102 ARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGVNGVGKTTTIGKLTK 161 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 K+ G V+LAAGDTFR+AA++QL+ W DR + V G+D+A++ Y+A A++K Sbjct: 162 KLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTQVVYQHEGADSASVIYDAISSAKSKG 221 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +DV+I DTAGRLHN LM + K+++V+K+ D APH ++ V+DATTG NAL Q E F+ Sbjct: 222 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTGGNALSQAEAFN 281 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 + TG+ +TK+DGTA+GG + I +P+ F+GVGE I+DL+ F A+DF+ + Sbjct: 282 QIVNLTGITITKLDGTAKGGIVFSIAKKLSLPLRFIGVGEKIDDLQVFNARDFTTALFNS 341 Query: 314 LD 315 D Sbjct: 342 ND 343 >gi|256820968|ref|YP_003142247.1| signal recognition particle-docking protein FtsY [Capnocytophaga ochracea DSM 7271] gi|256582551|gb|ACU93686.1| signal recognition particle-docking protein FtsY [Capnocytophaga ochracea DSM 7271] Length = 320 Score = 231 bits (590), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 119/277 (42%), Positives = 179/277 (64%), Gaps = 5/277 (1%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYD-VS 89 ++ ++D+ V ++LE++LI SD+GV KI++ + T+ +Y + +L + ++ Sbjct: 37 LVGKSKVDEEVLDDLEEVLIASDVGVNTTLKIIDRIETRVAKDKYLNTSELNTILREEIA 96 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 L+ + + F +P+V++VVGVNG GKTT IGKL+ + + GLKV+L A DT Sbjct: 97 GLLSETHTGEATDFTLPSEKKPYVMMVVGVNGAGKTTTIGKLASQFTKKGLKVVLGAADT 156 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+AAIDQL++WADRT + ++GSD A++AY+ A + DV+IIDTAGRLHN Sbjct: 157 FRAAAIDQLQVWADRTGVPMIKQQLGSDPASVAYDTLSSAVKQNADVVIIDTAGRLHNKI 216 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 LM + K+ RV++++ P APH VL VLD +TGQNA Q + F T L +TK+DGT Sbjct: 217 NLMNELSKIKRVMQKVIPDAPHEVLLVLDGSTGQNAFEQAKEFTKATEVTALAVTKLDGT 276 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 A+GG +I I +IPV ++GVGEGI+DL+ F +F Sbjct: 277 AKGGVVIGISDQFQIPVKYIGVGEGIDDLQIFNKYEF 313 >gi|269958440|ref|YP_003328227.1| cell division protein (FtsY) [Anaplasma centrale str. Israel] gi|269848269|gb|ACZ48913.1| cell division protein (FtsY) [Anaplasma centrale str. Israel] Length = 305 Score = 231 bits (590), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 121/285 (42%), Positives = 184/285 (64%), Gaps = 4/285 (1%) Query: 24 TSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82 TS +L GI + R++D +EL LLI +D+G A +++ +++ + S Sbjct: 18 TSSRLNAGIRKLFQEGRKVDQETLKELLHLLISTDMGRESASFFTQKIAAMQFS-EPSCA 76 Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 RV ++E I L ++ P + + H P V+++ GVNG GKTT KL++K G V Sbjct: 77 RVRETLAEEIEAFLTKVAVPISIE--HSPQVVMLCGVNGSGKTTTAAKLARKFQREGKSV 134 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 ++ A DTFR+AA+ QLKIWADR S + E G+DAA++AY+A QA +K+DV++IDTA Sbjct: 135 LMGACDTFRAAAVSQLKIWADRISCPIIAGEAGADAASIAYKAVDQAIREKIDVVLIDTA 194 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRL N+ LM + K+ RV+ R D APH+ + VLDAT GQNA QVE+F + AG G++ Sbjct: 195 GRLQNHKNLMEELAKVRRVIGRHDKKAPHNTIIVLDATIGQNAFSQVELFSSFAGVNGIV 254 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 +TK+DGTA+GG ++ + + I ++ +GVGEGI+DL+ F A++F+ Sbjct: 255 LTKLDGTAKGGIVLSVAQKYGIHIHAVGVGEGIDDLKDFSAREFA 299 >gi|308068623|ref|YP_003870228.1| cell division protein ftsY-like protein [Paenibacillus polymyxa E681] gi|305857902|gb|ADM69690.1| Cell division protein ftsY-like protein [Paenibacillus polymyxa E681] Length = 338 Score = 231 bits (590), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 135/312 (43%), Positives = 199/312 (63%), Gaps = 16/312 (5%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62 + +A+++ S ++ G T E +TD+ I +++D+ EELE++LI +D+GV Sbjct: 9 ESIANKTESVTKQFKDGLEKTRKGFVEKVTDLMIRRKKIDEEFYEELEEILIGADVGVNT 68 Query: 63 AQKIVEEL---LTKRYAKDVS-VQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPH---VI 114 ++E+L + KR +D S +Q VL + +SEL L N P VI Sbjct: 69 VMNLIEDLREEVKKRKIEDASELQPVLSEKLSEL-------LRGNDNSQLKMSPDGITVI 121 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 L VGVNGVGKTT IGKL+ + G KV+LAAGDTFR+ AI+QL++W +R + + + Sbjct: 122 LFVGVNGVGKTTTIGKLAHRFKQEGKKVLLAAGDTFRAGAIEQLEVWGERAGVEVIKQQS 181 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 GSD AA+ ++A + A+ ++VDVL+ DTAGRL N S LM + K+ RV++R P APH VL Sbjct: 182 GSDPAAVMFDAVQAAKQRQVDVLLCDTAGRLQNKSNLMEELNKIFRVIQREIPDAPHEVL 241 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VLDATTGQNAL Q ++F +G TGL++TK+DGTA+GG ++ I +PV +G+GE Sbjct: 242 LVLDATTGQNALNQAKLFGEKSGVTGLVLTKLDGTAKGGIVVAIRQELNLPVKLVGLGEK 301 Query: 295 INDLEPFVAKDF 306 +NDL+PF ++ F Sbjct: 302 VNDLQPFDSEQF 313 >gi|310641511|ref|YP_003946269.1| signal recognition gtpase (docking protein) [Paenibacillus polymyxa SC2] gi|309246461|gb|ADO56028.1| Signal recognition GTPase (Docking protein) [Paenibacillus polymyxa SC2] Length = 335 Score = 231 bits (590), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 136/312 (43%), Positives = 198/312 (63%), Gaps = 16/312 (5%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62 + +AS++ S ++ G T E +TD+ I +++D+ EELE++LI +D+GV Sbjct: 9 ESIASKTESVTKQFKDGLEKTRKGFVEKVTDLMIRRKKIDEEFYEELEEILIGADVGVNT 68 Query: 63 AQKIVEEL---LTKRYAKDVS-VQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPH---VI 114 ++E+L + KR +D S +Q VL + +SEL L N P VI Sbjct: 69 VMNLIEDLRGEVKKRKIEDASELQPVLSEKLSEL-------LRGNDNSQLKMNPDGITVI 121 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 L VGVNGVGKTT IGKL+ + G KV+LAAGDTFR+ AI+QL++W R + + + Sbjct: 122 LFVGVNGVGKTTTIGKLAHRFKQEGKKVLLAAGDTFRAGAIEQLEVWGQRAGVEVIKQQS 181 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 GSD AA+ ++A + A+ ++VDVL+ DTAGRL N S LM + K+ RV++R P APH VL Sbjct: 182 GSDPAAVMFDAVQAAKQRQVDVLLCDTAGRLQNKSNLMEELNKIFRVIQREIPDAPHEVL 241 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VLDATTGQNAL Q ++F +G TGL++TK+DGTA+GG ++ I +PV +G+GE Sbjct: 242 LVLDATTGQNALNQAKLFGEKSGVTGLVLTKLDGTAKGGIVVAIRQELNLPVKLVGLGEK 301 Query: 295 INDLEPFVAKDF 306 +NDL+PF ++ F Sbjct: 302 VNDLQPFDSEQF 313 >gi|212211681|ref|YP_002302617.1| cell division protein [Coxiella burnetii CbuG_Q212] gi|212010091|gb|ACJ17472.1| cell division protein [Coxiella burnetii CbuG_Q212] Length = 324 Score = 231 bits (590), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 128/310 (41%), Positives = 195/310 (62%), Gaps = 4/310 (1%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVA 61 N + + W+ +L + T +L +G+++++ ++ +D + EELE +L+ +DIG+ Sbjct: 14 NNETSKPKKGWLGRLNESLKRTRSRLTDGLSNLVLGKKTIDASLLEELEMILLSADIGIE 73 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 Q I+ L + K +S + L D ++ + +L P K + + S P VIL VGVN Sbjct: 74 ATQSILNNLSQQVARKSLSDPKALIDALKIELLNILGPCQK--HLEISASPFVILTVGVN 131 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT I KL+ +V+LAAGDTFR+AAI+QL+ W R +A + + G+D+A+ Sbjct: 132 GVGKTTTIAKLAHFYQSQKKRVILAAGDTFRAAAIEQLQTWGQRNNAPVIAQQPGADSAS 191 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + Y+A + A A+ D+LI DTAGRLH S LM + K+ RV+K+++P APH L VLDA Sbjct: 192 VIYDAMEAATARHYDLLIADTAGRLHTQSHLMDELAKIKRVMKKINPDAPHETLLVLDAG 251 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNA+ Q E FH G TG+ +TK+DGTA+GG + I ++P+ F+G+GE I DL+P Sbjct: 252 TGQNAINQAEQFHEHIGLTGIAITKLDGTAKGGVIFAIAKKMQLPIRFIGMGEKIEDLKP 311 Query: 301 FVAKDFSAVI 310 F AK+F A + Sbjct: 312 FNAKEFIAAL 321 >gi|83814471|ref|YP_446277.1| signal recognition particle-docking protein FtsY [Salinibacter ruber DSM 13855] gi|294508208|ref|YP_003572266.1| Signal recognition particle GTPase [Salinibacter ruber M8] gi|83755865|gb|ABC43978.1| signal recognition particle-docking protein FtsY [Salinibacter ruber DSM 13855] gi|294344536|emb|CBH25314.1| Signal recognition particle GTPase [Salinibacter ruber M8] Length = 324 Score = 231 bits (590), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 128/272 (47%), Positives = 180/272 (66%), Gaps = 7/272 (2%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMP 98 +D V +ELE++LI SD+GV I++ + R A+D VS Q + + + I ++++ Sbjct: 44 VDAEVLDELEEILITSDVGVDTTLDIIDHV-EARVAQDQYVSAQELNGLIRDEIARLMLE 102 Query: 99 LS--KPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 S +P ++D ++PHVI+VVGVNGVGKTT IGK++ K AG V++ AGDTFR+AA Sbjct: 103 GSEERPADFDAPLPNQPHVIMVVGVNGVGKTTTIGKMAHKYRQAGKSVLMGAGDTFRAAA 162 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 I+QL+IWADR + + G+D AA+AY+ + A+A+ DV I+DTAGRLH LM Sbjct: 163 IEQLEIWADRAGVPLIKQKHGADPAAVAYDTIEAAEARDADVAIVDTAGRLHTKGGLMDE 222 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + KM RV+ R P APH VL VLDA+TGQNALRQ E F TGL +TK+DGTA+GG Sbjct: 223 LAKMKRVMGRKIPDAPHEVLLVLDASTGQNALRQAEEFIDSVDVTGLALTKLDGTAKGGV 282 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +I + ++PV ++GVGE + DL+ F K F Sbjct: 283 VIGVSHQFQVPVKYIGVGEAVEDLQVFDRKGF 314 >gi|268317919|ref|YP_003291638.1| signal recognition particle-docking protein FtsY [Rhodothermus marinus DSM 4252] gi|262335453|gb|ACY49250.1| signal recognition particle-docking protein FtsY [Rhodothermus marinus DSM 4252] Length = 320 Score = 231 bits (590), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 133/304 (43%), Positives = 193/304 (63%), Gaps = 8/304 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +L +G T L + +I + ++DD V ++LE+LLI SD+GV +I+ + R Sbjct: 14 RLEEGLEKTRTSLLGKLDRLIRGKDQVDDEVLDQLEELLITSDVGVKTTLEIIRRV-EAR 72 Query: 75 YAKD--VSVQRVLYDVSELIHKMLM--PLSKPFNWD--FSHRPHVILVVGVNGVGKTTVI 128 A+D VS + + + + I ++L+ +P ++D H+P+VI+VVGVNGVGKTT I Sbjct: 73 VARDKYVSTRELNAIIRDEIAQLLLDHAPERPADFDAPLPHKPYVIMVVGVNGVGKTTTI 132 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ + +AG V+L A DTFR+AAI+QL+IWA+R + G+D AA+A++ Sbjct: 133 GKLAYRYREAGKSVLLGAADTFRAAAIEQLEIWAERAGVPLIKQHPGADPAAVAFDTLAA 192 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+++ VDV+IIDTAGRLH LM + K+ RV+ R APH VL VLDA+TGQNA+RQ Sbjct: 193 AKSRGVDVVIIDTAGRLHTKGGLMEELAKIRRVMGRQVEGAPHEVLLVLDASTGQNAIRQ 252 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 E F TGL++TK+DGTA+GG +I I KIPV ++GVGE I DL+ F + F Sbjct: 253 AEEFTKSVEVTGLVLTKLDGTAKGGIVIGISNEFKIPVKYIGVGEKIEDLQIFDRRAFVE 312 Query: 309 VITG 312 + G Sbjct: 313 ALFG 316 >gi|73662843|ref|YP_301624.1| signal recognition particle GTPase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495358|dbj|BAE18679.1| signal recognition particle GTPase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 406 Score = 231 bits (590), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 125/301 (41%), Positives = 185/301 (61%), Gaps = 16/301 (5%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K G + + + ++I+ R++D+ E LE++LI +D+G ++VEEL + Sbjct: 77 KFRAGLEKSRENFQAQLNNLIARYRKVDEEFFEALEEMLITADVGFNTVMQLVEELREEA 136 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP---------HVILVVGVNGVGKT 125 +++S D+ E+I + ++ + ++ D H +VIL+VGVNGVGKT Sbjct: 137 QKRNISETE---DLREVIVEKIVEI---YHQDDEHSEVMNIENEGLNVILMVGVNGVGKT 190 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+ + G KVMLAAGDTFR+ AI QLK+W +R D + GSD AA+ Y+A Sbjct: 191 TTIGKLAHRYQAEGKKVMLAAGDTFRAGAIQQLKVWGERVGVDVMSQNEGSDPAAVMYDA 250 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A++K +D+LI DTAGRL N S LM + K+ RV+ R P APH VL LDATTGQNA Sbjct: 251 INAAKSKGIDILICDTAGRLQNKSNLMNELEKVKRVISRAVPEAPHEVLLCLDATTGQNA 310 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L Q + F V TG+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + Sbjct: 311 LSQAKSFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKLDDLQPFNPES 370 Query: 306 F 306 + Sbjct: 371 Y 371 >gi|198242705|ref|YP_002217529.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937221|gb|ACH74554.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326625310|gb|EGE31655.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 491 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 122/295 (41%), Positives = 186/295 (63%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ +++ + A+A Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDSIQAAKA 367 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDVLI DTAGRL N LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++ Sbjct: 368 RNVDVLIADTAGRLQNKLHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482 >gi|146302707|ref|YP_001197298.1| signal recognition particle-docking protein FtsY [Flavobacterium johnsoniae UW101] gi|146157125|gb|ABQ07979.1| signal recognition particle-docking protein FtsY [Flavobacterium johnsoniae UW101] Length = 317 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 128/297 (43%), Positives = 186/297 (62%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG T ++ ++ + ++DD V + LE++L+ SD+GV KI+E + KR Sbjct: 16 LDKGLEKTKTTFFSKLSKAVAGKSKVDDDVLDNLEEVLVGSDVGVNTTLKIIERI-EKRV 74 Query: 76 AKDV-----SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 A+D + ++L D + L+ + + F +P+V++VVGVNGVGKTT IG Sbjct: 75 AEDKYLGTDELNQILRDEIGGLLSETNTGEATEFEIPKDKKPYVLMVVGVNGVGKTTTIG 134 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG KV+L A DTFR+AAIDQL++WADR + V +GSD A++A++ + A Sbjct: 135 KLAYQFKKAGYKVVLGAADTFRAAAIDQLQVWADRVNVPIVRQNMGSDPASVAFDTLQSA 194 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A+ DV+IIDTAGRLHN LM + K+ RV++++ APH VL VLD +TGQNA Q Sbjct: 195 VAQNADVVIIDTAGRLHNKINLMNELSKVKRVMQKVVADAPHDVLLVLDGSTGQNAFEQA 254 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F A T L +TK+DGTA+GG +I I +IPV ++GVGEGI DL+ F +F Sbjct: 255 KQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIEDLQVFNKYEF 311 >gi|57239579|ref|YP_180715.1| cell division protein ftsY-like protein [Ehrlichia ruminantium str. Welgevonden] gi|58579567|ref|YP_197779.1| cell division protein ftsY-like protein [Ehrlichia ruminantium str. Welgevonden] gi|58617620|ref|YP_196819.1| cell division protein ftsY-like protein [Ehrlichia ruminantium str. Gardel] gi|57161658|emb|CAH58587.1| putative cell division protein FtsY [Ehrlichia ruminantium str. Welgevonden] gi|58417232|emb|CAI28345.1| Cell division protein ftsY homolog [Ehrlichia ruminantium str. Gardel] gi|58418193|emb|CAI27397.1| Cell division protein ftsY homolog [Ehrlichia ruminantium str. Welgevonden] Length = 309 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 123/302 (40%), Positives = 198/302 (65%), Gaps = 4/302 (1%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKI 66 +++ + + K TS KL +GI I S S++++ EEL++LLI +DIG A + Sbjct: 2 TDNQGFFSNIKKSLFKTSSKLSDGIKKIFSNSKKINQETLEELKELLITADIGYENASLL 61 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 ++++ ++ +V+ + ++E I +L+ + KPF+ +PHVI++ G NG GKTT Sbjct: 62 IKKIAEAKF-DEVTDHTIKQKLAEEIENILLQVEKPFS--IIKKPHVIMICGTNGNGKTT 118 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 +GKL+ K + G V++AA DTFR+AA +QL +W+ + V S GSDAA++AY+A Sbjct: 119 TVGKLAYKFKNNGKSVLVAACDTFRAAATEQLTVWSQKVDFPIVTSTQGSDAASVAYQAM 178 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 +QA ++D+L++DTAGRLHN LM + K+ R++ + D APH V+ +LDATTGQNAL Sbjct: 179 QQALKNEIDILLVDTAGRLHNYKNLMEELAKIKRIIGKHDNEAPHDVVLILDATTGQNAL 238 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QVE+F +GL++TK+DGTA+GG +I I +K+ ++ +G+GE + DL+ F AK+F Sbjct: 239 NQVEVFLQFVNISGLVITKLDGTAKGGVVIRIAQKYKLNIHAIGIGEQVEDLKDFSAKEF 298 Query: 307 SA 308 +A Sbjct: 299 TA 300 >gi|219871928|ref|YP_002476303.1| cell division protein, signal recognition particle GTPase [Haemophilus parasuis SH0165] gi|219692132|gb|ACL33355.1| cell division protein, signal recognition particle GTPase [Haemophilus parasuis SH0165] Length = 455 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 122/295 (41%), Positives = 190/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G + S +++DD + EELE+ L+ +D+G+ KI++ L Sbjct: 151 FFSRLIKGLIKTKQSIGSGFRNFFSGKKIDDELFEELEEQLLVADLGMPTTTKIIKNLTE 210 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + + +LY ++ + +L P+++ + +P+VIL+VGVNGVGKTT IGKL Sbjct: 211 HATKQQLRDAELLYQQLKVELADVLKPVAQSLVLE-DKKPYVILMVGVNGVGKTTTIGKL 269 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R + V G+D+A++ ++A + A A Sbjct: 270 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGADSASVIFDAMQSAAA 329 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K +DVLI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 330 KGIDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 389 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I IP+ F+GVGE I+DL F A++F Sbjct: 390 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIDDLRSFDAEEF 444 >gi|116749888|ref|YP_846575.1| signal recognition particle-docking protein FtsY [Syntrophobacter fumaroxidans MPOB] gi|116698952|gb|ABK18140.1| signal recognition particle-docking protein FtsY [Syntrophobacter fumaroxidans MPOB] Length = 326 Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 119/275 (43%), Positives = 185/275 (67%), Gaps = 4/275 (1%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIH 93 ++ +++D + +ELE++LI SD+GV Q ++E++ K +++ + L D + E I Sbjct: 50 VLGRKKIDMDLLDELEEVLITSDLGVRTTQLLLEKVADKIKRQELKDPQKLRDQLREEIT 109 Query: 94 KMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 ++L S WD S RP VI+++GVNGVGKTT IGKL+ + GLKVML A DTFR+ Sbjct: 110 RILSVESSA--WDPRSARPFVIMIIGVNGVGKTTTIGKLAHQFKSEGLKVMLVAADTFRA 167 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AA++QL +W +R + V + GSD +A+A++A A ++ +D++++DTAGR+H LM Sbjct: 168 AAVEQLSLWGERVNVPVVKQKSGSDPSAVAFDAMDAAVSRGMDIVLLDTAGRMHTKVNLM 227 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + K+ RV+ R DP APH +L VLDA+TGQNAL Q +F G TGLI+TK+DGTA+G Sbjct: 228 EELKKVQRVVNRKDPSAPHEILLVLDASTGQNALSQARLFKEEIGVTGLILTKLDGTAKG 287 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 G ++ I ++PV ++G+GE ++DL PF ++F+ Sbjct: 288 GIIVAISDELQLPVRYIGIGESLDDLRPFDPEEFT 322 >gi|254374967|ref|ZP_04990447.1| hypothetical protein FTDG_01149 [Francisella novicida GA99-3548] gi|151572685|gb|EDN38339.1| hypothetical protein FTDG_01149 [Francisella novicida GA99-3548] Length = 343 Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 125/302 (41%), Positives = 192/302 (63%), Gaps = 2/302 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +L G + T+ K G++ I+ +++ D+ + E++E L+ +D+GV +IV L K Sbjct: 42 RLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEATDEIVAYLRDKV 101 Query: 75 YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 ++ L + + + ++++P KP D P VILVVGVNGVGKTT IGKL+K Sbjct: 102 ARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKLPFVILVVGVNGVGKTTTIGKLTK 161 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 K+ G V+LAAGDTFR+AA++QL+ W DR + V G+D+A++ Y+A A++K Sbjct: 162 KLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTQVVYQHEGADSASVIYDAISSAKSKG 221 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +DV+I DTAGRLHN LM + K+++V+K+ D APH ++ V+DATTG NAL Q E F+ Sbjct: 222 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTGGNALNQAEAFN 281 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 + TG+ +TK+DGTA+GG + I +P+ F+GVGE I+DL+ F A+DF+ + Sbjct: 282 QIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQVFNARDFTTALFNS 341 Query: 314 LD 315 D Sbjct: 342 ND 343 >gi|57866686|ref|YP_188384.1| cell division protein FtsY [Staphylococcus epidermidis RP62A] gi|242242518|ref|ZP_04796963.1| Sec family type I general secretory pathway protein signal recognition particle protein FtsY [Staphylococcus epidermidis W23144] gi|57637344|gb|AAW54132.1| cell division protein FtsY [Staphylococcus epidermidis RP62A] gi|242234026|gb|EES36338.1| Sec family type I general secretory pathway protein signal recognition particle protein FtsY [Staphylococcus epidermidis W23144] Length = 408 Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 125/299 (41%), Positives = 183/299 (61%), Gaps = 12/299 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K G + +E + ++I+ R++D+ E LE++LI +D+G K+ +EL T+ Sbjct: 83 KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMKLTDELRTEA 142 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTV 127 +++ + D+ E+I + ++ + S+ N + R +VIL+VGVNGVGKTT Sbjct: 143 QRRNI---QETEDLREVIVEKIVEIYHQEDDHSEAMNIE-DGRLNVILMVGVNGVGKTTT 198 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ + G KVMLAAGDTFR+ AI QL +W +R + V GSD AA+ Y+A Sbjct: 199 IGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLNVWGERVGVEVVSQNEGSDPAAVVYDAIN 258 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ K VD+LI DTAGRL N S LM + KM RV+ R P APH L LDATTGQNAL Sbjct: 259 AAKNKDVDILICDTAGRLQNKSNLMQELDKMKRVINRAIPDAPHEALLCLDATTGQNALS 318 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q F V +G+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 319 QARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKMDDLQPFSPESY 377 >gi|167856451|ref|ZP_02479171.1| cell division protein [Haemophilus parasuis 29755] gi|167852434|gb|EDS23728.1| cell division protein [Haemophilus parasuis 29755] Length = 455 Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 122/295 (41%), Positives = 190/295 (64%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L KG T + G + S +++DD + EELE+ L+ +D+G+ KI++ L Sbjct: 151 FFSRLIKGLIKTKQSIGSGFRNFFSGKKIDDELFEELEEQLLVADLGMPTTTKIIKNLTE 210 Query: 73 KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + + +LY ++ + +L P+++ + +P+VIL+VGVNGVGKTT IGKL Sbjct: 211 HATKQQLRDAELLYQQLKVELADVLKPVAQSLVLE-DKKPYVILMVGVNGVGKTTTIGKL 269 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G VMLAAGDTFR+AA++QL++W +R + V G+D+A++ ++A + A A Sbjct: 270 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGADSASVIFDAMQSAAA 329 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K +DVLI DTAGRL N + LM + K++RV+K+ D APH ++ LDA TGQNA+ Q ++ Sbjct: 330 KGIDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 389 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+ +TK+DGTA+GG + I IP+ F+GVGE I+DL F A++F Sbjct: 390 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIDDLRSFDAEEF 444 >gi|251810665|ref|ZP_04825138.1| Sec family type I general secretory pathway protein signal recognition particle protein FtsY [Staphylococcus epidermidis BCM-HMP0060] gi|282876333|ref|ZP_06285200.1| signal recognition particle-docking protein FtsY [Staphylococcus epidermidis SK135] gi|251805825|gb|EES58482.1| Sec family type I general secretory pathway protein signal recognition particle protein FtsY [Staphylococcus epidermidis BCM-HMP0060] gi|281295358|gb|EFA87885.1| signal recognition particle-docking protein FtsY [Staphylococcus epidermidis SK135] Length = 408 Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 125/299 (41%), Positives = 183/299 (61%), Gaps = 12/299 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K G + +E + ++I+ R++D+ E LE++LI +D+G K+ +EL T+ Sbjct: 83 KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMKLTDELRTEA 142 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTV 127 +++ + D+ E+I + ++ + S+ N + R +VIL+VGVNGVGKTT Sbjct: 143 QRRNI---QETEDLREVIVEKIVEIYHQEDDHSEAMNIE-DGRLNVILMVGVNGVGKTTT 198 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ + G KVMLAAGDTFR+ AI QL +W +R + V GSD AA+ Y+A Sbjct: 199 IGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLNVWGERVGVEVVSQNEGSDPAAVVYDAIN 258 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ K VD+LI DTAGRL N S LM + KM RV+ R P APH L LDATTGQNAL Sbjct: 259 AAKNKDVDILICDTAGRLQNKSNLMQELDKMKRVINRAIPDAPHEALLCLDATTGQNALS 318 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q F V +G+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 319 QARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKMDDLQPFNPESY 377 >gi|293366800|ref|ZP_06613476.1| cell division protein FtsY [Staphylococcus epidermidis M23864:W2(grey)] gi|291319101|gb|EFE59471.1| cell division protein FtsY [Staphylococcus epidermidis M23864:W2(grey)] gi|329736560|gb|EGG72826.1| signal recognition particle-docking protein FtsY [Staphylococcus epidermidis VCU045] Length = 408 Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 125/299 (41%), Positives = 183/299 (61%), Gaps = 12/299 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K G + +E + ++I+ R++D+ E LE++LI +D+G K+ +EL T+ Sbjct: 83 KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMKLTDELRTEA 142 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-------RPHVILVVGVNGVGKTTV 127 +++ + D+ E+I + ++ + + D+S R +VIL+VGVNGVGKTT Sbjct: 143 QRRNI---QETEDLREVIVEKIVEIYHQED-DYSEAMNIEDGRLNVILMVGVNGVGKTTT 198 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ + G KVMLAAGDTFR+ AI QL +W +R + V GSD AA+ Y+A Sbjct: 199 IGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLNVWGERVGVEVVSQNEGSDPAAVVYDAIN 258 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ K VD+LI DTAGRL N S LM + KM RV+ R P APH L LDATTGQNAL Sbjct: 259 AAKNKGVDILICDTAGRLQNKSNLMQELDKMKRVINRAIPDAPHEALLCLDATTGQNALS 318 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q F V +G+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 319 QARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKMDDLQPFNPESY 377 >gi|70726680|ref|YP_253594.1| hypothetical protein SH1679 [Staphylococcus haemolyticus JCSC1435] gi|68447404|dbj|BAE04988.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 407 Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K G + +E + ++I+ R +D+ E LE++LI +D+G ++ EEL T+ Sbjct: 79 KFKAGLEKSRQNFQEQLNNLIARYRTVDEDFFEALEEMLITADVGFNTVMQLTEELRTEA 138 Query: 75 YAKDVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 +++ L +V E+ H+ S+ N + R +VIL+VGVNGVGKTT IG Sbjct: 139 QRRNIQETEDLREVIVEKIVEIYHQE-DDQSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 196 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KVMLAAGDTFR+ AIDQL++W DR + + GSD AA+ Y+A A Sbjct: 197 KLAHRYKMEGKKVMLAAGDTFRAGAIDQLQVWGDRVGVEVIRQSEGSDPAAVVYDAINSA 256 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K VD+LI DTAGRL N S LM + KM RV+ R P APH L LDATTGQNAL Q Sbjct: 257 KNKGVDILICDTAGRLQNKSNLMQELDKMKRVISRAVPDAPHEALLCLDATTGQNALSQA 316 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F V +G+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 317 RSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKLDDLQPFNPESY 373 >gi|30249386|ref|NP_841456.1| Signal recognition particle GTPase, FtsY protein [Nitrosomonas europaea ATCC 19718] gi|30138749|emb|CAD85326.1| Signal recognition particle GTPase, FtsY protein [Nitrosomonas europaea ATCC 19718] Length = 345 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 133/317 (41%), Positives = 194/317 (61%), Gaps = 15/317 (4%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V + +S+ K+ +G T +L + ++ + R++D+ + EELE L+ +D G+ Sbjct: 31 QVETRPVSFTDKIRQGLTRTRQQLGKQLSGLFGGRKIDEDLYEELETALLTADTGIEATN 90 Query: 65 KIVEELLTK--RYAKDVSVQ--RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 +++E L T+ R A D S Q VL DV + ++L PL +P H P VI++ GVN Sbjct: 91 RLLESLRTRVRRDALDDSEQLKTVLQDV---LTELLQPLERPL-VTTGHTPFVIMIAGVN 146 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG----S 176 GVGKTT IGKL+ G V+LAAGDTFR+AA +QLK+W +R + E S Sbjct: 147 GVGKTTTIGKLAHYFQSQGHSVLLAAGDTFRAAAQEQLKVWGERNQITVISQESDPGKKS 206 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D AA+ ++A A A+K+D+++ DTAGRL LM I K+ RV+ + P APH VL V Sbjct: 207 DPAAVIFDAINAAIARKIDIVLADTAGRLTTQLHLMEEIRKIKRVIAKAIPDAPHEVLLV 266 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV--THKIP-VYFLGVGE 293 LDA TGQNA+ Q++ F+ G TGL+MTK+DGTARGG + I T P + F+GVGE Sbjct: 267 LDANTGQNAVSQLKAFNDALGVTGLVMTKLDGTARGGVIAAIAAQFTDTPPALRFIGVGE 326 Query: 294 GINDLEPFVAKDFSAVI 310 G++DL PF A++F+ + Sbjct: 327 GLDDLRPFNAREFAEAL 343 >gi|115315294|ref|YP_764017.1| signal recognition particle receptor FtsY [Francisella tularensis subsp. holarctica OSU18] gi|167009994|ref|ZP_02274925.1| signal recognition particle receptor FtsY [Francisella tularensis subsp. holarctica FSC200] gi|169656723|ref|YP_001429185.2| signal recognition particle-docking protein FtsY [Francisella tularensis subsp. holarctica FTNF002-00] gi|254368195|ref|ZP_04984215.1| signal recognition particle receptor ftsY [Francisella tularensis subsp. holarctica 257] gi|115130193|gb|ABI83380.1| signal recognition particle receptor FtsY [Francisella tularensis subsp. holarctica OSU18] gi|134254005|gb|EBA53099.1| signal recognition particle receptor ftsY [Francisella tularensis subsp. holarctica 257] gi|164551791|gb|ABU62229.2| signal recognition particle-docking protein FtsY [Francisella tularensis subsp. holarctica FTNF002-00] Length = 343 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 125/302 (41%), Positives = 191/302 (63%), Gaps = 2/302 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +L G + T+ K G++ I+ +++ D+ + E++E L+ +D+GV +IV L K Sbjct: 42 RLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEATDEIVTYLCDKV 101 Query: 75 YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 ++ L + + + ++++P KP D P VILVVGVNGVGKTT IGKL+K Sbjct: 102 ARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGVNGVGKTTTIGKLTK 161 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 K+ G V+LAAGDTFR+AA++QL+ W DR + V G+D+A++ Y A A++K Sbjct: 162 KLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTHVVYQHEGADSASVIYNAIGSAKSKG 221 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +DV+I DTAGRLHN LM + K+++V+K+ D APH ++ V+DATTG NAL Q E F+ Sbjct: 222 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTGGNALNQAEAFN 281 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 + TG+ +TK+DGTA+GG + I +P+ F+GVGE I+DL+ F A+DF+ + Sbjct: 282 QIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQVFNARDFTTALFNS 341 Query: 314 LD 315 D Sbjct: 342 ND 343 >gi|53802591|ref|YP_112672.1| cytochrome oxidase assembly family protein/cell division protein FtsY [Methylococcus capsulatus str. Bath] gi|53756352|gb|AAU90643.1| cytochrome oxidase assembly family protein/cell division protein FtsY [Methylococcus capsulatus str. Bath] Length = 671 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 126/284 (44%), Positives = 184/284 (64%), Gaps = 4/284 (1%) Query: 27 KLKEGITDIISSR---RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83 K + +T ++S+ R+D + +E+E+ L+ +D+GV V ++I+ +L + ++ + R Sbjct: 371 KTRSSLTGLLSALGRGRIDRALLDEIEEQLLMADVGVPVTREIIADLGSDLDRQEPADGR 430 Query: 84 VLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 L D ++ P S P RP VILVVGVNGVGKTT IGKL+K++ + G V Sbjct: 431 ALRDRLRGRLLDIVRPCSVPLVIPPEVRPFVILVVGVNGVGKTTTIGKLAKRLQNEGHSV 490 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 MLAAGDTFR+AA++QL+ W +R + G+D+A++ Y+A + A+A+ VD+LI DTA Sbjct: 491 MLAAGDTFRAAAVEQLQTWGERNKIAVIAQHSGADSASVIYDAVEAARARGVDILIADTA 550 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRLH S LM + K+ R++ RLD APH VL VLDA TGQNAL Q +F+ G TGL+ Sbjct: 551 GRLHTKSNLMEELSKIKRIIGRLDETAPHEVLLVLDAGTGQNALSQARLFNEAVGLTGLV 610 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +TK+DGTA+GG + + IP+ F+G+GEGI+DL F A F Sbjct: 611 LTKLDGTAKGGVIFALARQFGIPIRFIGIGEGIDDLRDFDAVQF 654 >gi|53724091|ref|YP_104611.1| signal recognition particle-docking protein FtsY [Burkholderia mallei ATCC 23344] gi|52427514|gb|AAU48107.1| signal recognition particle-docking protein FtsY [Burkholderia mallei ATCC 23344] Length = 327 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 131/302 (43%), Positives = 187/302 (61%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + +++ L Sbjct: 32 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDALR 87 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ ++L PL K F + +P V+++ GVNG GKTT IGK Sbjct: 88 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSFVLGRA-QPLVMMIAGVNGAGKTTSIGK 146 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 147 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 205 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 206 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 265 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ + Sbjct: 266 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 325 Query: 311 TG 312 G Sbjct: 326 LG 327 >gi|56417159|ref|YP_154233.1| cell division protein [Anaplasma marginale str. St. Maries] gi|222475524|ref|YP_002563941.1| cell division protein (ftsY) [Anaplasma marginale str. Florida] gi|254995329|ref|ZP_05277519.1| cell division protein (ftsY) [Anaplasma marginale str. Mississippi] gi|255003510|ref|ZP_05278474.1| cell division protein (ftsY) [Anaplasma marginale str. Puerto Rico] gi|255004632|ref|ZP_05279433.1| cell division protein (ftsY) [Anaplasma marginale str. Virginia] gi|56388391|gb|AAV86978.1| cell division protein [Anaplasma marginale str. St. Maries] gi|222419662|gb|ACM49685.1| cell division protein (ftsY) [Anaplasma marginale str. Florida] Length = 305 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 121/285 (42%), Positives = 184/285 (64%), Gaps = 4/285 (1%) Query: 24 TSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82 TS KL GI + +++D +EL LLI +D+G A +++ +++ + S Sbjct: 18 TSSKLNAGIRKLFRDGQKVDQETLKELLHLLISTDMGRESASFFTQKIAAMQFS-EPSCA 76 Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 RV ++E I L ++ P + + H P V+++ GVNG GKTT KL++K G V Sbjct: 77 RVRETLAEEIEAFLTKVAVPISIE--HSPQVVMLCGVNGSGKTTTAAKLARKFQREGKSV 134 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 ++ A DTFR+AA+ QLKIWADR S + E G+DAA++AY+A QA +K+DV++IDTA Sbjct: 135 LMGACDTFRAAAVSQLKIWADRISCPIIAGEAGADAASIAYKAVDQAIREKIDVVLIDTA 194 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRL N+ LM + K+ RV+ R D APH+ + VLDAT GQNA QVE+F + AG G++ Sbjct: 195 GRLQNHKNLMEELAKVRRVIGRHDKKAPHNTIIVLDATIGQNAFSQVELFSSFAGVNGIV 254 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 +TK+DGTA+GG ++ + + I ++ +GVGEGI+DL+ F A++F+ Sbjct: 255 LTKLDGTAKGGIVLSVAQKYGIHIHAVGVGEGIDDLKDFSAREFA 299 >gi|332678887|gb|AEE88016.1| Signal recognition particle receptor protein FtsY (alpha subunit) [Francisella cf. novicida Fx1] Length = 331 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 125/302 (41%), Positives = 192/302 (63%), Gaps = 2/302 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +L G + T+ K G++ I+ +++ D+ + E++E L+ +D+GV +IV L K Sbjct: 30 RLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEATDEIVAYLRDKV 89 Query: 75 YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 ++ L + + + ++++P KP D P VILVVGVNGVGKTT IGKL+K Sbjct: 90 ARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKLPFVILVVGVNGVGKTTTIGKLTK 149 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 K+ G V+LAAGDTFR+AA++QL+ W DR + V G+D+A++ Y+A A++K Sbjct: 150 KLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTQVVYQHEGADSASVIYDAISSAKSKG 209 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +DV+I DTAGRLHN LM + K+++V+K+ D APH ++ V+DATTG NAL Q E F+ Sbjct: 210 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTGGNALNQAEAFN 269 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 + TG+ +TK+DGTA+GG + I +P+ F+GVGE I+DL+ F A+DF+ + Sbjct: 270 QIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQVFDARDFTTALFNS 329 Query: 314 LD 315 D Sbjct: 330 ND 331 >gi|242373527|ref|ZP_04819101.1| Sec family type I general secretory pathway protein signal recognition particle protein FtsY [Staphylococcus epidermidis M23864:W1] gi|242348890|gb|EES40492.1| Sec family type I general secretory pathway protein signal recognition particle protein FtsY [Staphylococcus epidermidis M23864:W1] Length = 418 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 125/299 (41%), Positives = 184/299 (61%), Gaps = 12/299 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K G + +E + ++I+ R++D+ E LE++LI +D+G K+ +EL T+ Sbjct: 89 KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMKLTDELRTEA 148 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTV 127 +++ + D+ E+I + ++ + S+ N + R +VIL+VGVNGVGKTT Sbjct: 149 QRRNI---QETEDLREVIVEKIVEIYHQEDEHSEAMNIE-DGRLNVILMVGVNGVGKTTT 204 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ + G KVMLAAGDTFR+ AI QL++W +R + V GSD AA+ Y+A Sbjct: 205 IGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLQVWGERVGVEVVSQSEGSDPAAVVYDAIN 264 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ K VD+LI DTAGRL N S LM + KM RV+ R P APH L LDATTGQNAL Sbjct: 265 AAKNKGVDILICDTAGRLQNKSNLMQELDKMKRVISRAIPDAPHEALLCLDATTGQNALS 324 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q F V +G+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 325 QARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKLDDLQPFNPESY 383 >gi|56707294|ref|YP_169190.1| signal recognition particle receptor FtsY [Francisella tularensis subsp. tularensis SCHU S4] gi|110669764|ref|YP_666321.1| signal recognition particle receptor FtsY [Francisella tularensis subsp. tularensis FSC198] gi|254369976|ref|ZP_04985984.1| signal recognition particle receptor FtsY [Francisella tularensis subsp. tularensis FSC033] gi|254874132|ref|ZP_05246842.1| signal recognition particle receptor ftsY [Francisella tularensis subsp. tularensis MA00-2987] gi|56603786|emb|CAG44753.1| signal recognition particle receptor FtsY [Francisella tularensis subsp. tularensis SCHU S4] gi|110320097|emb|CAL08136.1| signal recognition particle receptor FtsY [Francisella tularensis subsp. tularensis FSC198] gi|151568222|gb|EDN33876.1| signal recognition particle receptor FtsY [Francisella tularensis subsp. tularensis FSC033] gi|254840131|gb|EET18567.1| signal recognition particle receptor ftsY [Francisella tularensis subsp. tularensis MA00-2987] Length = 343 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 125/302 (41%), Positives = 192/302 (63%), Gaps = 2/302 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +L G + T+ K G++ I+ +++ D+ + E++E L+ +D+GV +IV L K Sbjct: 42 RLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEATDEIVTYLRDKV 101 Query: 75 YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 ++ L + + + ++++P KP D P VILVVGVNGVGKTT IGKL+K Sbjct: 102 ARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGVNGVGKTTTIGKLTK 161 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 K+ G V+LAAGDTFR+AA++QL+ W DR + V G+D+A++ Y+A A++K Sbjct: 162 KLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTHVVYQHEGADSASVIYDAIGSAKSKG 221 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +DV+I DTAGRLHN LM + K+++V+K+ D APH ++ V+DATTG NAL Q E F+ Sbjct: 222 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTGGNALNQAEAFN 281 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 + TG+ +TK+DGTA+GG + I +P+ F+GVGE I+DL+ F A+DF+ + Sbjct: 282 QIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQVFNARDFTTALFNS 341 Query: 314 LD 315 D Sbjct: 342 ND 343 >gi|167463677|ref|ZP_02328766.1| signal recognition particle-docking protein FtsY [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382558|ref|ZP_08056438.1| signal recognition particle-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153474|gb|EFX45879.1| signal recognition particle-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 335 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 135/323 (41%), Positives = 203/323 (62%), Gaps = 10/323 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62 + +++++ + K +G + T E I D+ S+R+ +D+G EELE++LI +D+GV Sbjct: 9 ESISNKTEAVTNKFKEGLSKTRDVFVERIEDLFSTRKKVDEGFYEELEEILISADVGVNT 68 Query: 63 AQKIVEEL---LTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRP-HVILVV 117 +++++L + KR +D V Q VL + +LI+ L+ K + + VIL V Sbjct: 69 VMELIDDLRDEVRKRKIEDPGVLQPVLSE--KLIN--LLETGKDAELNLAGEGLSVILFV 124 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 GVNGVGKTT IGK++ + G KVMLAAGDTFR+ AI+QL+ W +R + + GSD Sbjct: 125 GVNGVGKTTTIGKMAHMLKSQGKKVMLAAGDTFRAGAIEQLETWGERVGVEVIKQHSGSD 184 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 AA+ ++A + A+ + +DVL+ DTAGRL N LM + K+ RV++R P APH VL VL Sbjct: 185 PAAVMFDALQAAKRRGMDVLLCDTAGRLQNKVNLMEELNKIYRVIRREIPEAPHEVLLVL 244 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DATTGQNAL Q ++F G TGL++TK+DGTA+GG ++ I IPV F+G+GE ++D Sbjct: 245 DATTGQNALTQAKLFGDKTGLTGLVLTKLDGTAKGGIVVAIRQELDIPVKFVGLGEKMDD 304 Query: 298 LEPFVAKDFSAVITGCLDYGEEK 320 L+ F ++ F + G EEK Sbjct: 305 LQKFDSEQFVHALFGKWIAEEEK 327 >gi|332827122|gb|EGJ99907.1| signal recognition particle-docking protein FtsY [Dysgonomonas gadei ATCC BAA-286] Length = 317 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 131/297 (44%), Positives = 187/297 (62%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG T + ++ +I+ + ++DD V ++LE++LI SD+GV KI+E + KR Sbjct: 15 LDKGLEKTKESMFSKLSRVIAGKSKVDDDVLDQLEEVLIMSDVGVNTTLKIIERI-EKRA 73 Query: 76 AKDVSVQ-RVLYDV-SELIHKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIG 129 AKD V + L ++ E I +L + N DFS +P+VI+VVGVNGVGKTT IG Sbjct: 74 AKDKYVDDKELKNILREEIADLLTENNAVDNDDFSVPETAKPYVIMVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG V L A DTFR+AA++QL IW +R + +GSD A++A++ A Sbjct: 134 KLANQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVGVPVIKQAMGSDPASVAFDTLSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 ++ DV+IIDTAGRLHN LM + K+ +V+ ++ P APH VL VLD +TGQNA Q Sbjct: 194 KSNNADVVIIDTAGRLHNKIGLMNELSKIKKVMDKIVPGAPHEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F A T L +TK+DGTA+GG +I I KIPV ++G+GEGI+DL+ F ++F Sbjct: 254 TQFTAATDVTALAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGIDDLQVFRRREF 310 >gi|323524665|ref|YP_004226818.1| signal recognition particle-docking protein FtsY [Burkholderia sp. CCGE1001] gi|323381667|gb|ADX53758.1| signal recognition particle-docking protein FtsY [Burkholderia sp. CCGE1001] Length = 386 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 135/308 (43%), Positives = 185/308 (60%), Gaps = 7/308 (2%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 AS SW+ +L G + TS L T I ++D+ + EELE L+ SD GV + + Sbjct: 85 ASAKRSWLTRLKTGLSKTSSSL----TGIFVGTKIDEDLYEELETALLMSDAGVDATEFL 140 Query: 67 VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 +E L K R + Q+V + L+ +L PL K + +P V+++ GVNG GKT Sbjct: 141 LEALREKVRAERLTEPQQVKAALRALLVDLLKPLEKSLMLGRA-KPLVVMIAGVNGAGKT 199 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K + V+LAAGDTFR+AA +QL IW R + V E G D AA+ ++A Sbjct: 200 TSIGKLAKHLQSFNQSVLLAAGDTFRAAAREQLAIWGQRNNVTVVAQESG-DPAAVIFDA 258 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+A+K+DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNA Sbjct: 259 VGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTGQNA 318 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QV+ F G TGLI+TK+DGTA+GG L I IPVYF+GVGE + DL+PF A++ Sbjct: 319 LTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEE 378 Query: 306 FSAVITGC 313 FS + G Sbjct: 379 FSDALLGA 386 >gi|332751432|gb|EGJ81835.1| signal recognition particle-docking protein FtsY [Shigella flexneri 2747-71] Length = 262 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 113/252 (44%), Positives = 166/252 (65%), Gaps = 2/252 (0%) Query: 56 SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVI 114 +D+GV +KI+ L K + LY + E + ++L + +P N + P VI Sbjct: 3 ADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-DKTPFVI 61 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 L+VGVNGVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W R + + Sbjct: 62 LMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHT 121 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 G+D+A++ ++A + A+A+ +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ Sbjct: 122 GADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVM 181 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 +DA+TGQNA+ Q ++FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE Sbjct: 182 LTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGER 241 Query: 295 INDLEPFVAKDF 306 I DL PF A DF Sbjct: 242 IEDLRPFKADDF 253 >gi|254369795|ref|ZP_04985805.1| signal recognition particle receptor FtsY [Francisella tularensis subsp. holarctica FSC022] gi|157122754|gb|EDO66883.1| signal recognition particle receptor FtsY [Francisella tularensis subsp. holarctica FSC022] Length = 343 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 126/302 (41%), Positives = 191/302 (63%), Gaps = 2/302 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +L G + T+ K G++ I+ +++ D+ + E++E L+ +DIGV +IV L K Sbjct: 42 RLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADIGVEATDEIVTYLRDKV 101 Query: 75 YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 ++ L + + + ++++P KP D P VILVVGVNGVGKTT IGKL+K Sbjct: 102 ARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGVNGVGKTTTIGKLTK 161 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 K+ G V+LAAGDTFR+AA++QL+ W DR + V G+D+A++ Y A A++K Sbjct: 162 KLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTHVVYQHEGADSASVIYNAIGSAKSKG 221 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +DV+I DTAGRLHN LM + K+++V+K+ D APH ++ V+DATTG NAL Q E F+ Sbjct: 222 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTGGNALNQAEAFN 281 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 + TG+ +TK+DGTA+GG + I +P+ F+GVGE I+DL+ F A+DF+ + Sbjct: 282 QIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQVFNARDFTTALFNS 341 Query: 314 LD 315 D Sbjct: 342 ND 343 >gi|317503241|ref|ZP_07961299.1| cell division protein FtsY [Prevotella salivae DSM 15606] gi|315665654|gb|EFV05263.1| cell division protein FtsY [Prevotella salivae DSM 15606] Length = 316 Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 130/297 (43%), Positives = 187/297 (62%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG T + +T ++ + ++DD V + LE++LI SD+GV KI+E + + R Sbjct: 15 LDKGLEKTKESVFSKLTRAVAGKSKVDDEVLDNLEEVLITSDVGVDTTLKIIERIES-RV 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLSKPFN--WDF--SHRPHVILVVGVNGVGKTTVIG 129 A+D VS + + E I +L + N WD H+P+VILVVGVNGVGKTT IG Sbjct: 74 ARDKYVSTSELNGILREEIASLLSENNSDDNDSWDLPSDHKPYVILVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + +AG KV L A DTFR+AA++Q+ IW DR V ++GSD A++A++ + A Sbjct: 134 KLAYQFKNAGKKVYLGAADTFRAAAVEQISIWGDRVGVPVVKQQMGSDPASVAFDTLQSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A DV++IDTAGRLHN LM + K+ V+K++ P AP V+ VLD +TGQNA Q Sbjct: 194 KANGADVVLIDTAGRLHNKVGLMNELKKIKEVMKKVLPEAPDEVMLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F AV T L +TK+DGTA+GG +I I K+PV ++G+GE + DL+ F K+F Sbjct: 254 KQFSAVTNITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEKMEDLQLFNRKEF 310 >gi|89256930|ref|YP_514292.1| signal recognition particle receptor FtsY [Francisella tularensis subsp. holarctica LVS] gi|290953990|ref|ZP_06558611.1| signal recognition particle-docking protein FtsY [Francisella tularensis subsp. holarctica URFT1] gi|295312609|ref|ZP_06803361.1| signal recognition particle-docking protein FtsY [Francisella tularensis subsp. holarctica URFT1] gi|89144761|emb|CAJ80096.1| signal recognition particle receptor FtsY [Francisella tularensis subsp. holarctica LVS] Length = 331 Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 125/302 (41%), Positives = 191/302 (63%), Gaps = 2/302 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +L G + T+ K G++ I+ +++ D+ + E++E L+ +D+GV +IV L K Sbjct: 30 RLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEATDEIVTYLCDKV 89 Query: 75 YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 ++ L + + + ++++P KP D P VILVVGVNGVGKTT IGKL+K Sbjct: 90 ARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGVNGVGKTTTIGKLTK 149 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 K+ G V+LAAGDTFR+AA++QL+ W DR + V G+D+A++ Y A A++K Sbjct: 150 KLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTHVVYQHEGADSASVIYNAIGSAKSKG 209 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +DV+I DTAGRLHN LM + K+++V+K+ D APH ++ V+DATTG NAL Q E F+ Sbjct: 210 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTGGNALNQAEAFN 269 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 + TG+ +TK+DGTA+GG + I +P+ F+GVGE I+DL+ F A+DF+ + Sbjct: 270 QIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQVFNARDFTTALFNS 329 Query: 314 LD 315 D Sbjct: 330 ND 331 >gi|88811310|ref|ZP_01126565.1| signal recognition particle receptor FtsY [Nitrococcus mobilis Nb-231] gi|88791199|gb|EAR22311.1| signal recognition particle receptor FtsY [Nitrococcus mobilis Nb-231] Length = 357 Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 137/308 (44%), Positives = 194/308 (62%), Gaps = 14/308 (4%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62 Q+ + W+ +L G T G + + R+ +D+ + EELE LL+ +D+GV Sbjct: 44 QEEGAPRTGWLIRLHSGLRKTG----SGFSSLFLGRKAIDEELLEELETLLLMADVGVEA 99 Query: 63 AQKIVEELLTK----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118 Q IV+ L + + A +++Q L D E+I +L P ++ D +H P+V+L VG Sbjct: 100 TQCIVDNLTERLKRNQLADAMALQNALRD--EMI-AILAPCTQALVID-TH-PYVMLTVG 154 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNGVGKTT IGKL +++ D G +VMLAAGDTFR+AA++QLKIW +R + GSDA Sbjct: 155 VNGVGKTTTIGKLGRRLQDNGYEVMLAAGDTFRAAAVEQLKIWGERGDIPVIAQPTGSDA 214 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 A++ Y+A + A A+ +DVLI DTAGRLH S LM + K+ RVL + D APH VL V+D Sbjct: 215 ASVIYDAHQAAFARGIDVLIADTAGRLHTQSNLMEELKKIKRVLSKQDSSAPHEVLLVVD 274 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A+TGQNAL Q FHA G TG+ +TK+DGTA+GG + I +P+ +GVGE + DL Sbjct: 275 ASTGQNALAQARQFHAAVGVTGIALTKLDGTAKGGVIFAIAQQLGLPIRCIGVGEQLEDL 334 Query: 299 EPFVAKDF 306 PF A++F Sbjct: 335 RPFTAEEF 342 >gi|67643445|ref|ZP_00442191.1| signal recognition particle-docking protein FtsY [Burkholderia mallei GB8 horse 4] gi|121600561|ref|YP_991446.1| signal recognition particle-docking protein FtsY [Burkholderia mallei SAVP1] gi|124383927|ref|YP_001027477.1| signal recognition particle-docking protein FtsY [Burkholderia mallei NCTC 10229] gi|126448883|ref|YP_001082444.1| signal recognition particle-docking protein FtsY [Burkholderia mallei NCTC 10247] gi|167001053|ref|ZP_02266854.1| signal recognition particle-docking protein FtsY [Burkholderia mallei PRL-20] gi|254175216|ref|ZP_04881877.1| signal recognition particle-docking protein FtsY [Burkholderia mallei ATCC 10399] gi|254201698|ref|ZP_04908062.1| signal recognition particle-docking protein FtsY [Burkholderia mallei FMH] gi|254207032|ref|ZP_04913383.1| signal recognition particle-docking protein FtsY [Burkholderia mallei JHU] gi|254357511|ref|ZP_04973785.1| signal recognition particle-docking protein FtsY [Burkholderia mallei 2002721280] gi|121229371|gb|ABM51889.1| signal recognition particle-docking protein FtsY [Burkholderia mallei SAVP1] gi|124291947|gb|ABN01216.1| signal recognition particle-docking protein FtsY [Burkholderia mallei NCTC 10229] gi|126241753|gb|ABO04846.1| signal recognition particle-docking protein FtsY [Burkholderia mallei NCTC 10247] gi|147747592|gb|EDK54668.1| signal recognition particle-docking protein FtsY [Burkholderia mallei FMH] gi|147752574|gb|EDK59640.1| signal recognition particle-docking protein FtsY [Burkholderia mallei JHU] gi|148026575|gb|EDK84660.1| signal recognition particle-docking protein FtsY [Burkholderia mallei 2002721280] gi|160696261|gb|EDP86231.1| signal recognition particle-docking protein FtsY [Burkholderia mallei ATCC 10399] gi|238524797|gb|EEP88228.1| signal recognition particle-docking protein FtsY [Burkholderia mallei GB8 horse 4] gi|243063123|gb|EES45309.1| signal recognition particle-docking protein FtsY [Burkholderia mallei PRL-20] Length = 439 Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 131/302 (43%), Positives = 187/302 (61%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + +++ L Sbjct: 144 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDALR 199 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ ++L PL K F + +P V+++ GVNG GKTT IGK Sbjct: 200 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSFVLGRA-QPLVMMIAGVNGAGKTTSIGK 258 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 259 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 317 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 318 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 377 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ + Sbjct: 378 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 437 Query: 311 TG 312 G Sbjct: 438 LG 439 >gi|49483398|ref|YP_040622.1| cell division protein [Staphylococcus aureus subsp. aureus MRSA252] gi|282903789|ref|ZP_06311677.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus C160] gi|282905553|ref|ZP_06313408.1| signal recognition particle receptor [Staphylococcus aureus subsp. aureus Btn1260] gi|282908528|ref|ZP_06316358.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus subsp. aureus WW2703/97] gi|283957977|ref|ZP_06375428.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus A017934/97] gi|295427721|ref|ZP_06820353.1| signal recognition particle receptor [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591320|ref|ZP_06949958.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus MN8] gi|49241527|emb|CAG40213.1| putative cell division protein [Staphylococcus aureus subsp. aureus MRSA252] gi|282327590|gb|EFB57873.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330845|gb|EFB60359.1| signal recognition particle receptor [Staphylococcus aureus subsp. aureus Btn1260] gi|282595407|gb|EFC00371.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus C160] gi|283790126|gb|EFC28943.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus A017934/97] gi|295128079|gb|EFG57713.1| signal recognition particle receptor [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576206|gb|EFH94922.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus MN8] gi|315194123|gb|EFU24516.1| putative cell division protein [Staphylococcus aureus subsp. aureus CGS00] Length = 416 Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 128/297 (43%), Positives = 181/297 (60%), Gaps = 8/297 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71 K G + +E + ++IS R++D+ E LE++LI +D+G + EEL Sbjct: 87 KFKAGLEKSRQNFQEQLNNLISRYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146 Query: 72 TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 +R +D R ++ + E+ H+ S+ N + R +VIL+VGVNGVGKTT IG Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 204 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KVMLAAGDTFR+ AIDQLK+W +R D + GSD AA+ Y+A A Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K VD+LI DTAGRL N + LM + K+ RV+ R P APH L LDATTGQNAL Q Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F V TG+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381 >gi|304404218|ref|ZP_07385880.1| signal recognition particle-docking protein FtsY [Paenibacillus curdlanolyticus YK9] gi|304347196|gb|EFM13028.1| signal recognition particle-docking protein FtsY [Paenibacillus curdlanolyticus YK9] Length = 331 Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 130/320 (40%), Positives = 197/320 (61%), Gaps = 3/320 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62 + +AS++ + G A T + E + ++I+ R+ +D+ EELE++LI +D+GV Sbjct: 9 ETIASKTEAVTNIFKDGLAKTRTAIVEKVEELITRRKKIDEAFFEELEEILIGADVGVNT 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 +++++L + A+ + L V SE + ++L + P VIL VGVNG Sbjct: 69 VMQLIDDLRAEVKARKIEDASDLQPVLSEKLVEILKGVDDPELHMAESGMTVILFVGVNG 128 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT IGKL+ K G V+LAAGDTFR+ AI+QL++W R D + G+D AA+ Sbjct: 129 VGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGQRVGVDVIKQSAGADPAAV 188 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 Y+A + A+ + VDVL+ DTAGRL N + LM + K+ RV++R P APH VL VLDATT Sbjct: 189 MYDAVQAAKQRSVDVLLCDTAGRLQNKTNLMDELNKIFRVIQREVPTAPHEVLLVLDATT 248 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL Q ++F +G TGL++TK+DGTA+GG +I I +PV +G+GE ++DL+ F Sbjct: 249 GQNALSQAKLFGEKSGVTGLVLTKLDGTAKGGIIIAIRNELNLPVKLVGLGEKMDDLQQF 308 Query: 302 VAKDF-SAVITGCLDYGEEK 320 + F A+ G + +E+ Sbjct: 309 DSDQFVHALFAGLIQKKDEE 328 >gi|134301331|ref|YP_001121299.1| signal recognition particle-docking protein FtsY [Francisella tularensis subsp. tularensis WY96-3418] gi|187931064|ref|YP_001891048.1| signal recognition particle-docking protein FtsY [Francisella tularensis subsp. mediasiatica FSC147] gi|224456359|ref|ZP_03664832.1| signal recognition particle receptor FtsY [Francisella tularensis subsp. tularensis MA00-2987] gi|134049108|gb|ABO46179.1| signal recognition particle-docking protein FtsY [Francisella tularensis subsp. tularensis WY96-3418] gi|187711973|gb|ACD30270.1| signal recognition particle-docking protein FtsY [Francisella tularensis subsp. mediasiatica FSC147] gi|282158413|gb|ADA77804.1| signal recognition particle receptor FtsY [Francisella tularensis subsp. tularensis NE061598] Length = 331 Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 125/302 (41%), Positives = 192/302 (63%), Gaps = 2/302 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +L G + T+ K G++ I+ +++ D+ + E++E L+ +D+GV +IV L K Sbjct: 30 RLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEATDEIVTYLRDKV 89 Query: 75 YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 ++ L + + + ++++P KP D P VILVVGVNGVGKTT IGKL+K Sbjct: 90 ARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGVNGVGKTTTIGKLTK 149 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 K+ G V+LAAGDTFR+AA++QL+ W DR + V G+D+A++ Y+A A++K Sbjct: 150 KLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTHVVYQHEGADSASVIYDAIGSAKSKG 209 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +DV+I DTAGRLHN LM + K+++V+K+ D APH ++ V+DATTG NAL Q E F+ Sbjct: 210 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTGGNALNQAEAFN 269 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 + TG+ +TK+DGTA+GG + I +P+ F+GVGE I+DL+ F A+DF+ + Sbjct: 270 QIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQVFNARDFTTALFNS 329 Query: 314 LD 315 D Sbjct: 330 ND 331 >gi|238899311|ref|YP_002924994.1| cell division protein: membrane binding (N-terminal); GTPase domain (C-terminal) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229467072|gb|ACQ68846.1| cell division protein: membrane binding (N-terminal); GTPase domain (C-terminal) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 375 Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 124/299 (41%), Positives = 187/299 (62%), Gaps = 2/299 (0%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 E + +L T L G ++ +++DD + EELE+ L+ +D+GV QKI++ Sbjct: 66 EKAGFFTRLKNSLKKTKQYLGTGFIELFKGKKIDDDLFEELEEQLLMADVGVETTQKIID 125 Query: 69 ELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L T K + LY + E + ++ + +P + P+VIL+VGVNGVGKTT Sbjct: 126 SLTTHSSKKQLKEASGLYVKLKEEMLSIISKVEQPLKVS-NKSPYVILMVGVNGVGKTTT 184 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ ++ GL V+LAAGDTFR+AA +QLKIW +R V G+D+A++ ++A + Sbjct: 185 IGKLAHQLRQQGLSVLLAAGDTFRAAATEQLKIWGERNQIPVVAQHDGADSASVIFDAVQ 244 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+A+ +DV++ DTAGRL N + LM + K++RV+K+ PH V+ VLDA+TGQNA+ Sbjct: 245 SAKARGIDVVLADTAGRLQNKTHLMEELKKIVRVMKKWGEEFPHEVMLVLDASTGQNAIN 304 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++FH TGL++TK+DG+A+GG + I IP+ ++GVGE I DL PF A DF Sbjct: 305 QTKLFHETVPLTGLVLTKLDGSAKGGIIFAIADQFGIPIRYIGVGEKIEDLRPFNAGDF 363 >gi|27467828|ref|NP_764465.1| signal recognition particle [Staphylococcus epidermidis ATCC 12228] gi|27315373|gb|AAO04507.1|AE016747_4 signal recognition particle [Staphylococcus epidermidis ATCC 12228] gi|329724316|gb|EGG60828.1| signal recognition particle-docking protein FtsY [Staphylococcus epidermidis VCU144] gi|329736323|gb|EGG72595.1| signal recognition particle-docking protein FtsY [Staphylococcus epidermidis VCU028] Length = 408 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 125/299 (41%), Positives = 183/299 (61%), Gaps = 12/299 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K G + +E + ++I+ R++D+ E LE++LI +D+G K+ +EL T+ Sbjct: 83 KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMKLTDELRTEA 142 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTV 127 +++ + D+ E+I + ++ + S+ N + R +VIL+VGVNGVGKTT Sbjct: 143 QRRNI---QETEDLREVIVEKIVEIYHQEDDHSEAMNIE-DGRLNVILMVGVNGVGKTTT 198 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ + G KVMLAAGDTFR+ AI QL +W +R + V GSD AA+ Y+A Sbjct: 199 IGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLNVWGERVGVEVVSQNEGSDPAAVVYDAIN 258 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ K VD+LI DTAGRL N S LM + KM RV+ R P APH L LDATTGQNAL Sbjct: 259 AAKNKGVDILICDTAGRLQNKSNLMQELDKMKRVINRAIPDAPHEALLCLDATTGQNALS 318 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q F V +G+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 319 QARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKMDDLQPFNPESY 377 >gi|167756880|ref|ZP_02429007.1| hypothetical protein CLORAM_02429 [Clostridium ramosum DSM 1402] gi|237734590|ref|ZP_04565071.1| signal recognition particle-docking protein ftsY [Mollicutes bacterium D7] gi|167703055|gb|EDS17634.1| hypothetical protein CLORAM_02429 [Clostridium ramosum DSM 1402] gi|229382410|gb|EEO32501.1| signal recognition particle-docking protein ftsY [Coprobacillus sp. D7] Length = 327 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 133/323 (41%), Positives = 194/323 (60%), Gaps = 11/323 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K +S K G ++ + I ++ + R ++D EELE++LI SD+GV++ Sbjct: 9 EKFVGKSAKQNEKYVAGLDRSNSTFSDRINELAARFREINDEYFEELENILIMSDVGVSM 68 Query: 63 AQKIVEELLTKRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118 KIVEE+ + ++++ + ++ D +I+ ++ N+ VIL+VG Sbjct: 69 VMKIVEEIKNEVRLQNITDPKEINEIIVDKMFVIYANDSVMTTKINY-AEEGLTVILMVG 127 Query: 119 VNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 VNG GKTT IGKL+ ++ +D G KVM+AAGDTFR+ AIDQL +WA R D V + G D Sbjct: 128 VNGAGKTTTIGKLANRIVNDEGKKVMVAAGDTFRAGAIDQLAVWAQRVGVDIVKGKEGGD 187 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 +A+ ++A KQA+ K VDVLI DTAGRL N LM + KM R++KR P APH L V+ Sbjct: 188 PSAVVFDALKQAKEKNVDVLICDTAGRLQNKVNLMNELEKMNRIIKREVPDAPHETLLVI 247 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DATTGQN + Q F + +GL++TKMDGTA+GG ++ I IPV F+G+GE ++D Sbjct: 248 DATTGQNGVSQAVEFSKITDVSGLVLTKMDGTAKGGIVLSIKDQLNIPVKFIGLGESVDD 307 Query: 298 LEPFVAKDFSAVITG-CLDYGEE 319 L+ F D I G C + EE Sbjct: 308 LQEF---DLDQYIYGLCKNLVEE 327 >gi|167630242|ref|YP_001680741.1| signal recognition particle-docking protein ftsy [Heliobacterium modesticaldum Ice1] gi|167592982|gb|ABZ84730.1| signal recognition particle-docking protein ftsy [Heliobacterium modesticaldum Ice1] Length = 304 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 131/302 (43%), Positives = 193/302 (63%), Gaps = 4/302 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L +G T L E + +++ R ++D+ + EELE+ LI +D+G + +VE L Sbjct: 5 FFSRLKEGLTRTRQNLVEKVEALVTGRPKIDEELFEELEEALISADVGADTSLDLVERLR 64 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 A+ + + D+ E + ++L ++P +D H+P V+L+VGVNGVGKTT I K Sbjct: 65 QTVKAQKIGDPARIKDLLQEEVARILGEQAQPVAFD--HQPTVVLIVGVNGVGKTTTIAK 122 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + G KV+LAAGDTFR+AAIDQL+IW R + + + GSD +A+A++A + A Sbjct: 123 LAHRWKQEGRKVLLAAGDTFRAAAIDQLEIWGQRVGVEVIRHQEGSDPSAVAFDAVQAAV 182 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 ++ VDVLIIDTAGRLHN S LM + K+ RVL R P APH L VLDATTGQNA+ Q Sbjct: 183 SRGVDVLIIDTAGRLHNKSHLMNELSKINRVLDRALPGAPHETLLVLDATTGQNAVSQAR 242 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F G TGL++TK+DGTA+GG ++ I + PV F+G+GE ++DL F +F+ + Sbjct: 243 LFSEAVGLTGLVLTKLDGTAKGGVILAIAAEMQAPVKFIGIGEKMDDLRDFDPPEFARAL 302 Query: 311 TG 312 G Sbjct: 303 FG 304 >gi|227513459|ref|ZP_03943508.1| signal recognition particle-docking protein FtsY [Lactobacillus buchneri ATCC 11577] gi|227083332|gb|EEI18644.1| signal recognition particle-docking protein FtsY [Lactobacillus buchneri ATCC 11577] Length = 481 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 131/316 (41%), Positives = 190/316 (60%), Gaps = 20/316 (6%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61 + + ASES I+ KG A + + + ++++ R +D+ ++LED+LI SD+G Sbjct: 163 DSETASES-GAIQSYEKGLAKSRSSFGQKLNALLANFRHVDESFFDDLEDMLIESDVGFE 221 Query: 62 VAQKIV----EELLTKRYAKDVSVQRV-------LYDVSELIHKMLMPLSKPFNWDFSHR 110 + KI EE+ + K VQ V +YD + + L+K Sbjct: 222 TSMKIADDLREEVKLQNAKKPKDVQNVIVKKLIDMYDQAGNGENPAINLAK-------SG 274 Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VIL+VGVNGVGKTT IGK++K D G KV+LAA DTFR+ AI+QL +WA R D V Sbjct: 275 PTVILMVGVNGVGKTTTIGKMAKMYKDQGKKVVLAAADTFRAGAIEQLNVWAQRDGVDIV 334 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 S+ SD +++A++A K+A+ + D+L++DTAGRL N LM + KM ++L R P P Sbjct: 335 KSKPKSDPSSVAFDAVKKARDEHYDILMVDTAGRLQNKVNLMNELSKMKKILTREIPEGP 394 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 H VL VLDATTGQNA+ Q +MF TG+++TK+DGTARGG ++ I +PV ++G Sbjct: 395 HEVLLVLDATTGQNAMTQAKMFKETTDVTGIVLTKLDGTARGGIVLAIRSELHLPVKYVG 454 Query: 291 VGEGINDLEPFVAKDF 306 +GE + DL+PF DF Sbjct: 455 LGEKVTDLKPFDPNDF 470 >gi|325955098|ref|YP_004238758.1| signal recognition particle-docking protein FtsY [Weeksella virosa DSM 16922] gi|323437716|gb|ADX68180.1| signal recognition particle-docking protein FtsY [Weeksella virosa DSM 16922] Length = 320 Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 128/311 (41%), Positives = 191/311 (61%), Gaps = 15/311 (4%) Query: 11 LSWIRK---------LTKGFASTSLKLKEGIT-DIISSRRLDDGVREELEDLLIRSDIGV 60 +SW +K L +G + L + I+ ++ ++DD V ++LE++LI SD+GV Sbjct: 1 MSWFKKILGKESKEKLDEGLEKSKQSLFDKISRTVVGKSKVDDEVLDDLEEVLISSDVGV 60 Query: 61 A----VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVIL 115 + ++I E + +Y + ++L + ++ L+ + + + F P VI+ Sbjct: 61 ETTVNIIRRIEERVARDKYVSTSELNKILREEIAGLLAENNIDDTDGFQIPKKDHPFVIM 120 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VVGVNGVGKTT IGKL+ + GLKV+L A DTFR+AA+DQL IWA+R V +G Sbjct: 121 VVGVNGVGKTTTIGKLAAQFKAKGLKVVLGAADTFRAAAVDQLVIWAERADVPIVKQAMG 180 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD A++AY+ + A A+K DV++IDTAGRLHN LM + K+ RV++++ P APH VL Sbjct: 181 SDPASVAYDTVQSAVAQKADVVLIDTAGRLHNKVNLMNELTKIKRVMQKVIPDAPHEVLL 240 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 VLD +TGQNA Q + F T + +TK+DGTA+GG +I I KIPV ++GVGEGI Sbjct: 241 VLDGSTGQNAFEQAKQFTQATEVTSMAVTKLDGTAKGGVVIGISDQFKIPVKYIGVGEGI 300 Query: 296 NDLEPFVAKDF 306 +DL+ F +F Sbjct: 301 HDLQAFNKMEF 311 >gi|118498159|ref|YP_899209.1| cell division protein, signal recognition particle GTPase [Francisella tularensis subsp. novicida U112] gi|118424065|gb|ABK90455.1| cell division protein, signal recognition particle GTPase [Francisella novicida U112] Length = 331 Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 124/302 (41%), Positives = 192/302 (63%), Gaps = 2/302 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +L G + T+ K G++ I+ +++ D+ + E++E L+ +D+GV +IV L K Sbjct: 30 RLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEATDEIVAYLRDKV 89 Query: 75 YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 ++ L + + + ++++P KP D P VILVVGVNGVGKTT IGKL+K Sbjct: 90 ARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGVNGVGKTTTIGKLTK 149 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 K+ G V+LAAGDTFR+AA++QL+ W +R + V G+D+A++ Y+A A++K Sbjct: 150 KLQSQGKSVILAAGDTFRAAAVEQLREWGNRNNTHVVYQHEGADSASVIYDAISSAKSKG 209 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +DV+I DTAGRLHN LM + K+++V+K+ D APH ++ V+DATTG NAL Q E F+ Sbjct: 210 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTGGNALSQAEAFN 269 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 + TG+ +TK+DGTA+GG + I +P+ F+GVGE I+DL+ F A+DF+ + Sbjct: 270 QIVNLTGITITKLDGTAKGGIVFSIAKKLSLPLRFIGVGEKIDDLQVFNARDFTTALFNS 329 Query: 314 LD 315 D Sbjct: 330 ND 331 >gi|167822657|ref|ZP_02454128.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 9] Length = 347 Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 131/302 (43%), Positives = 186/302 (61%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + ++ L Sbjct: 52 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGALR 107 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + EL+ ++L PL K + +P V+++ GVNG GKTT IGK Sbjct: 108 EKVRAGRLTDPQQVKDALRELLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 166 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 167 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 225 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 226 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 285 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ + Sbjct: 286 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 345 Query: 311 TG 312 G Sbjct: 346 LG 347 >gi|194324332|ref|ZP_03058105.1| signal recognition particle-docking protein FtsY [Francisella tularensis subsp. novicida FTE] gi|194321397|gb|EDX18882.1| signal recognition particle-docking protein FtsY [Francisella tularensis subsp. novicida FTE] Length = 343 Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 124/302 (41%), Positives = 192/302 (63%), Gaps = 2/302 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +L G + T+ K G++ I+ +++ D+ + E++E L+ +D+GV +IV L K Sbjct: 42 RLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEATDEIVAYLRDKV 101 Query: 75 YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 ++ L + + + ++++P KP D P VILVVGVNGVGKTT IGKL+K Sbjct: 102 ARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGVNGVGKTTTIGKLTK 161 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 K+ G V+LAAGDTFR+AA++QL+ W +R + V G+D+A++ Y+A A++K Sbjct: 162 KLQSQGKSVILAAGDTFRAAAVEQLREWGNRNNTHVVYQHEGADSASVIYDAISSAKSKG 221 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +DV+I DTAGRLHN LM + K+++V+K+ D APH ++ V+DATTG NAL Q E F+ Sbjct: 222 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTGGNALSQAEAFN 281 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 + TG+ +TK+DGTA+GG + I +P+ F+GVGE I+DL+ F A+DF+ + Sbjct: 282 QIVNLTGITITKLDGTAKGGIVFSIAKKLSLPLRFIGVGEKIDDLQVFNARDFTTALFNS 341 Query: 314 LD 315 D Sbjct: 342 ND 343 >gi|114331516|ref|YP_747738.1| signal recognition particle-docking protein FtsY [Nitrosomonas eutropha C91] gi|114308530|gb|ABI59773.1| signal recognition particle-docking protein FtsY [Nitrosomonas eutropha C91] Length = 345 Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 127/315 (40%), Positives = 194/315 (61%), Gaps = 11/315 (3%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 ++ ES+S+ K+ +G T + + ++ + R++D+ + EELE L+ +D G+ Sbjct: 31 RIEVESVSFADKIRQGLTRTRQQFGKQLSGLFGGRKIDEDLYEELETALLTADTGIQATN 90 Query: 65 KIVEELLT--KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 +++E L T KR A D S Q + + + + ++L PL +P H+P VI++ GVNGV Sbjct: 91 RLLESLRTRVKRDALDDSKQ-LKTALQDALTELLQPLERPL-VTTGHKPFVIMIAGVNGV 148 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS----DA 178 GKTT IGKL+ G V+LAAGDTFR+AA +QLKIW +R + E D Sbjct: 149 GKTTTIGKLAHYFQSQGHSVLLAAGDTFRAAAQEQLKIWGERNQITVISQESDPGKKGDP 208 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A A A+K+D+++ DTAGRL LM I K+ RV+ + P APH VL VLD Sbjct: 209 AAVIFDAVNAAIARKIDIVLADTAGRLTTQLHLMEEIKKIKRVVAKAIPDAPHEVLLVLD 268 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV---VTHKIPVYFLGVGEGI 295 A TGQNA+ Q++ F+ G TGL+MTK+DGTA+GG + I V + + + F+G+GEG+ Sbjct: 269 ANTGQNAVSQLKAFNDALGVTGLVMTKLDGTAKGGVIAAIAAQFVDNPLALRFIGMGEGL 328 Query: 296 NDLEPFVAKDFSAVI 310 +DL PF A++F+ + Sbjct: 329 DDLRPFNAREFAEAL 343 >gi|67459630|ref|YP_247254.1| Signal recognition particle-docking protein FtsY [Rickettsia felis URRWXCal2] gi|75535973|sp|Q4UK46|FTSY_RICFE RecName: Full=Cell division protein ftsY homolog gi|67005163|gb|AAY62089.1| Signal recognition particle-docking protein FtsY [Rickettsia felis URRWXCal2] Length = 303 Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 133/303 (43%), Positives = 192/303 (63%), Gaps = 3/303 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 +S KL + + TS K+ +GI I ++LD EELE+LLI SD+ V+V I+EE Sbjct: 2 ISIFSKLKQSLSKTSNKISKGIDKIFYKKKLDTETLEELEELLIASDMSVSVVTNIIEEF 61 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++ K++ V ++ELI + L PF + ++ +VILV GVNG GKTT IGK Sbjct: 62 KKVKFDKEIDSDTVKEALAELIEQQLSKSEIPFTLN-ENKLNVILVCGVNGAGKTTTIGK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ G KV +AA DTFR+AA++QL W DR +A + E +D A++AY A +++ Sbjct: 121 LAAMYGMQGKKVAVAACDTFRAAAVNQLSTWVDRANALLITGEESADPASVAYRAMEESI 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249 + +D+L IDTAGRLHN LM + K+++V+K+LD +AP HSVL V+DA TGQN QV Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVL-VIDAITGQNTYNQV 239 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F+ TGLI+TK+DG+A+ G L+ +V +PVYF+G+GE I DL+ F DF+ Sbjct: 240 EHFNDATNLTGLIVTKLDGSAKAGVLVGVVQKFNLPVYFIGIGEKIEDLKIFNRHDFAKS 299 Query: 310 ITG 312 + G Sbjct: 300 LVG 302 >gi|186475077|ref|YP_001856547.1| signal recognition particle-docking protein FtsY [Burkholderia phymatum STM815] gi|184191536|gb|ACC69501.1| signal recognition particle-docking protein FtsY [Burkholderia phymatum STM815] Length = 392 Score = 229 bits (584), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 135/307 (43%), Positives = 185/307 (60%), Gaps = 7/307 (2%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 A+ SW+ +L G + TS IT I R+D+ + EELE L+ SD GV + + Sbjct: 92 AAARRSWLTRLRSGLSKTS----SSITGIFVGTRIDEDLYEELETALLMSDAGVDATEYL 147 Query: 67 VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 +E L K R + Q+V + L+ +L PL K H P V+++ GVNG GKT Sbjct: 148 LETLREKVRSERLTDPQQVKSALRTLLVDLLKPLEKSLTLGHYH-PTVMMIAGVNGAGKT 206 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K M V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A Sbjct: 207 TSIGKLAKHMQRFNQSVLLAAGDTFRAAAREQLAIWGERNNVMVVQQESG-DPAAVIFDA 265 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+A+K++V++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNA Sbjct: 266 VGAARARKINVVMADTAGRLPTQLHLMEELRKVKRVIGKAMAGAPHEVLLVIDANTGQNA 325 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QV+ F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF A++ Sbjct: 326 LAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAEE 385 Query: 306 FSAVITG 312 FS + G Sbjct: 386 FSDALLG 392 >gi|319638771|ref|ZP_07993530.1| cell division protein FtsY [Neisseria mucosa C102] gi|317400012|gb|EFV80674.1| cell division protein FtsY [Neisseria mucosa C102] Length = 510 Score = 229 bits (584), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 127/308 (41%), Positives = 187/308 (60%), Gaps = 14/308 (4%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 V + LSW +L +G + K+ + + + ++D+ + EELE +LI SD+G+ Sbjct: 204 VEEQKLSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEAT-- 261 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVG 118 E L K VS+ + L D +EL ++ ++ PL KP + P VI++ G Sbjct: 262 ---EYLMKDVRDRVSL-KGLKDGNELRGALKDALYDLVKPLEKPLVLPETKEPFVIMLAG 317 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 +NG GKTT IGKL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+ Sbjct: 318 INGAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNV-TVISQTTGDS 376 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A + A+A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLD Sbjct: 377 AAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLD 436 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A GQNA+ QV+ F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL Sbjct: 437 ANIGQNAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDL 496 Query: 299 EPFVAKDF 306 PF AK F Sbjct: 497 RPFNAKAF 504 >gi|254456325|ref|ZP_05069754.1| signal recognition particle-docking protein FtsY [Candidatus Pelagibacter sp. HTCC7211] gi|207083327|gb|EDZ60753.1| signal recognition particle-docking protein FtsY [Candidatus Pelagibacter sp. HTCC7211] Length = 305 Score = 229 bits (584), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 123/296 (41%), Positives = 184/296 (62%), Gaps = 7/296 (2%) Query: 20 GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY--AK 77 GF ++ G+ DI+ + +DD + +E+ LI+SD+GV A +I E + + K Sbjct: 10 GFKKSASAFTSGLRDIVVKKEIDDKTLDRIEEYLIQSDVGVVAASEIKEIITDSKIDPNK 69 Query: 78 DVS--VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 D++ ++ +L D I ++ PL ++ + L+ GVNGVGKTT IGK+SK + Sbjct: 70 DIADEIRTILKD---YIISLMKPLENNNFFNKKEKISATLISGVNGVGKTTTIGKISKIL 126 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 G KVMLAA DTFR+AAI+QL+ WA++ + S G+D A++A++A ++A A D Sbjct: 127 KANGNKVMLAASDTFRAAAIEQLENWANKVDVEITKSSQGADPASVAFKAIEEAIANNFD 186 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 ++IDTAGRL N LM K+ V K++DP APH V+ VLDAT+GQN + QVE F+ + Sbjct: 187 QVLIDTAGRLQNKKNLMEEYKKIANVTKKMDPEAPHDVILVLDATSGQNVINQVEEFNKI 246 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 TGLIMTK+DGTA+GG L+ + K+P+ LG+GE +DL+ F A+ F+ T Sbjct: 247 IPITGLIMTKLDGTAKGGILLAVAKKFKLPIIALGLGEKEDDLQIFEAEKFAEAFT 302 >gi|172057912|ref|YP_001814372.1| signal recognition particle-docking protein FtsY [Exiguobacterium sibiricum 255-15] gi|171990433|gb|ACB61355.1| signal recognition particle-docking protein FtsY [Exiguobacterium sibiricum 255-15] Length = 334 Score = 229 bits (584), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 141/321 (43%), Positives = 201/321 (62%), Gaps = 12/321 (3%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60 S Q+V S K T+G T L + D++ R +D+ EELE++LI++D+GV Sbjct: 14 STQEVTS-------KFTEGLTKTRDGLANAVNDLVYRFREVDEDFFEELEEVLIQADVGV 66 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +VE+L + K+V + + DV E++ ML+ + D SH +VIL VGV Sbjct: 67 TTTMDLVEKLKVEVKRKNVKDTKEVRDVLVEVVANMLVEEEES-ELDLSHELNVILFVGV 125 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+ ++ + G VMLAAGDTFR+ AIDQL++W +R+ + GSD A Sbjct: 126 NGVGKTTTIGKLANRLKNEGKTVMLAAGDTFRAGAIDQLQVWGERSGVPVIRQGEGSDPA 185 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ Y+A + A+A++VDVLI DTAGRL N LM + K+ RV++R P APH VL LDA Sbjct: 186 AVIYDAVQAAKARRVDVLICDTAGRLQNKVNLMNELEKVKRVIEREIPGAPHEVLLALDA 245 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNA+ Q + F +G+++TK+DGTA+GG ++ I +PV F+G+GE I+DL+ Sbjct: 246 TTGQNAMVQAKAFKQATDVSGIVLTKLDGTAKGGIVLAIKNELDLPVKFVGLGEKIDDLQ 305 Query: 300 PFVAKDFSAVITGCLDYGEEK 320 PF A+ F + G D EEK Sbjct: 306 PFDAEQFVYGLFG--DVFEEK 324 >gi|332880087|ref|ZP_08447771.1| signal recognition particle-docking protein FtsY [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682083|gb|EGJ54996.1| signal recognition particle-docking protein FtsY [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 320 Score = 229 bits (584), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 123/278 (44%), Positives = 179/278 (64%), Gaps = 7/278 (2%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-----VSVQRVLYD-V 88 II ++D+ V ++LE++LI SD+GV KI+E + R AKD + ++L + + Sbjct: 37 IIGKSKVDEEVLDDLEEVLIASDVGVNTTLKIIERI-EARVAKDKYLGTSELNKILREEI 95 Query: 89 SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 L+ + + F+ +P+V++VVGVNG GKTT IGKL+ + + GLKV+L A D Sbjct: 96 GSLLSETHTGEATDFSLPADKKPYVMMVVGVNGAGKTTTIGKLASQFTKKGLKVVLGAAD 155 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+AAIDQL++WADRT + ++GSD A++AY+ A + DV+IIDTAGRLHN Sbjct: 156 TFRAAAIDQLQVWADRTGVPMIKQQLGSDPASVAYDTLTSAVKQGADVVIIDTAGRLHNK 215 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM + K+ RV++++ APH VL VLD +TGQNA Q + F T L +TK+DG Sbjct: 216 INLMNELSKIKRVMQKVIADAPHEVLLVLDGSTGQNAFEQAKEFTKATEVTALAVTKLDG 275 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TA+GG +I I +IPV ++GVGEGI+DL+ F +F Sbjct: 276 TAKGGVVIGISDQFQIPVKYIGVGEGIDDLQIFNKYEF 313 >gi|327441088|dbj|BAK17453.1| signal recognition particle GTPase [Solibacillus silvestris StLB046] Length = 414 Score = 229 bits (584), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 129/318 (40%), Positives = 192/318 (60%), Gaps = 16/318 (5%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 S +K G T + D+++ R++D+ EELED+L+++D+G +++++L Sbjct: 97 SITQKFKAGLEKTRNSFTSKVNDLVARYRKVDEDFFEELEDVLLQADVGFETVMELMDKL 156 Query: 71 ---LTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + ++ KD + + L ++ E + L L+ + D + VIL VGVNGV Sbjct: 157 RFEVQRQNIKDTNGIQAIISEKLVEIYESGEENLTELNIQQSGDLT----VILFVGVNGV 212 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+ ++ G VMLAAGDTFR+ AI+QL++W DR + + GSD AA+ Sbjct: 213 GKTTTIGKLAHRLKSEGKSVMLAAGDTFRAGAIEQLQVWGDRVGVEVIAQSEGSDPAAVM 272 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+ + VD+LI DTAGRL N LM + K+ RV+ R P APH VL LDATTG Sbjct: 273 YDAIRAAKNRGVDILICDTAGRLQNKVNLMNELEKVHRVISREIPDAPHEVLLALDATTG 332 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL Q +MF TG+++TK+DGTA+GG ++ I IPV F+G+GE ++DL+PF Sbjct: 333 QNALVQAQMFKEATNVTGIVLTKLDGTAKGGIVLAIRNKLHIPVKFVGLGEKMDDLQPFD 392 Query: 303 AKDFSAVITGCLDYGEEK 320 A+ + + G G EK Sbjct: 393 AERY---VYGLFAEGLEK 407 >gi|237810765|ref|YP_002895216.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei MSHR346] gi|237505520|gb|ACQ97838.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei MSHR346] Length = 438 Score = 229 bits (584), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 131/302 (43%), Positives = 186/302 (61%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + ++ L Sbjct: 143 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGALR 198 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + EL+ ++L PL K + +P V+++ GVNG GKTT IGK Sbjct: 199 EKVRAGRLTDPQQVKDALRELLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 257 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 258 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 316 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 317 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 376 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ + Sbjct: 377 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 436 Query: 311 TG 312 G Sbjct: 437 LG 438 >gi|34540014|ref|NP_904493.1| signal recognition particle-docking protein FtsY [Porphyromonas gingivalis W83] gi|188994128|ref|YP_001928380.1| signal recognition particle-docking protein [Porphyromonas gingivalis ATCC 33277] gi|34396325|gb|AAQ65392.1| signal recognition particle-docking protein FtsY [Porphyromonas gingivalis W83] gi|188593808|dbj|BAG32783.1| signal recognition particle-docking protein [Porphyromonas gingivalis ATCC 33277] Length = 317 Score = 229 bits (584), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 187/297 (62%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L +G + T + IT ++ + ++DD V +ELE++L+ SD+GV KI++ + +R Sbjct: 15 LDEGLSKTKENVFAKITRAVAGKSKVDDEVLDELENVLVTSDVGVDTTLKIIKRI-EERV 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLSK----PFNWDFSHRPHVILVVGVNGVGKTTVIG 129 A+D VS + + + I +L F+ +P+VI+VVGVNGVGKTT IG Sbjct: 74 ARDKYVSTSELTTILRQEIASLLTENGSADGDSFDLPSGTKPYVIMVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG V+L A DTFR+AA++QL+IW++R + ++GSD A++AY+ A Sbjct: 134 KLAHRFRQAGKSVVLGAADTFRAAAVEQLEIWSERVGVPIIKQQMGSDPASVAYDTVSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A VDV+IIDTAGRLHN LM + K+ RV++++ P APH +L VLD +TGQNA Q Sbjct: 194 VANGVDVVIIDTAGRLHNKVNLMNELTKIKRVMQKVVPDAPHEILLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F A L +TK+DGTA+GG +I I KIPV ++G+GEGI+DL+ F K+F Sbjct: 254 RQFTAATEVNALAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGIDDLQIFRKKEF 310 >gi|86132661|ref|ZP_01051254.1| signal recognition particle-docking protein FtsY [Dokdonia donghaensis MED134] gi|85816903|gb|EAQ38088.1| signal recognition particle-docking protein FtsY [Dokdonia donghaensis MED134] Length = 317 Score = 229 bits (584), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 186/297 (62%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG T + ++ ++ + ++DD V + LE++L+ SD+GV K++ + +R Sbjct: 16 LDKGLEKTKTSFFDKMSKAVAGKSKVDDDVLDNLEEVLVTSDVGVKTTLKVITRI-EERV 74 Query: 76 AKDVSV-----QRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 AKD V R+L + ++ L+ + + F ++PHVI+VVGVNGVGKTT IG Sbjct: 75 AKDKYVGTDELNRILREEIAGLLSETNTGNATEFEIPSQNKPHVIMVVGVNGVGKTTTIG 134 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KV+L A DTFR+AAIDQL++WADR V ++GSD A++A++A + Sbjct: 135 KLAYQFKKQGKKVVLGAADTFRAAAIDQLQVWADRVDVPIVKQQMGSDPASVAFDALESG 194 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DV+IIDTAGRLHN LM + K+ RV++++ APH VL VLD +TGQNA Q Sbjct: 195 VKQDADVIIIDTAGRLHNKVNLMNELTKVKRVMQKVVGDAPHDVLLVLDGSTGQNAFEQA 254 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F A T L +TK+DGTA+GG +I I +IPV ++GVGEGI DL+ F +F Sbjct: 255 KQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIEDLQVFNKVEF 311 >gi|269940727|emb|CBI49108.1| putative cell division protein [Staphylococcus aureus subsp. aureus TW20] Length = 416 Score = 229 bits (584), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71 K G + +E + ++I+ R++D+ E LE++LI +D+G + EEL Sbjct: 87 KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146 Query: 72 TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 +R +D R ++ + E+ H+ S+ N + R +VIL+VGVNGVGKTT IG Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 204 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KVMLAAGDTFR+ AIDQLK+W +R D + GSD AA+ Y+A A Sbjct: 205 KLAYRFKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K VD+LI DTAGRL N + LM + K+ RV+ R P APH L LDATTGQNAL Q Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F V TG+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381 >gi|208780176|ref|ZP_03247518.1| signal recognition particle-docking protein FtsY [Francisella novicida FTG] gi|208743825|gb|EDZ90127.1| signal recognition particle-docking protein FtsY [Francisella novicida FTG] Length = 331 Score = 229 bits (583), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 124/302 (41%), Positives = 192/302 (63%), Gaps = 2/302 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +L G + T+ K G++ I+ +++ D+ + E++E L+ +D+GV +IV L K Sbjct: 30 RLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEATDEIVAYLRDKV 89 Query: 75 YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 ++ L + + + ++++P KP D P VILVVGVNGVGKTT IGKL+K Sbjct: 90 ARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGVNGVGKTTTIGKLTK 149 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 K+ G V+LAAGDTFR+AA++QL+ W +R + V G+D+A++ Y+A A++K Sbjct: 150 KLQSQGKSVILAAGDTFRAAAVEQLREWGNRNNTHVVYQHEGADSASVIYDAISSAKSKG 209 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +DV+I DTAGRLHN LM + K+++V+K+ D APH ++ V+DATTG NAL Q E F+ Sbjct: 210 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTGGNALSQAEAFN 269 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 + TG+ +TK+DGTA+GG + I +P+ F+GVGE I+DL+ F A+DF+ + Sbjct: 270 QIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQVFNARDFTTALFNS 329 Query: 314 LD 315 D Sbjct: 330 ND 331 >gi|315224167|ref|ZP_07866007.1| cell division protein FtsY [Capnocytophaga ochracea F0287] gi|314945900|gb|EFS97909.1| cell division protein FtsY [Capnocytophaga ochracea F0287] Length = 320 Score = 229 bits (583), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 123/278 (44%), Positives = 179/278 (64%), Gaps = 7/278 (2%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELI 92 ++ ++D+ V ++LE++LI SD+GV KI++ + R AKD ++ + + E I Sbjct: 37 LVGKSKVDEEVLDDLEEVLIASDVGVNTTLKIIDRI-EARVAKDKYLNTSELNTILREEI 95 Query: 93 HKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 +L DF+ +P+V++VVGVNG GKTT IGKL+ + + GLKV+L A D Sbjct: 96 AGLLSETHTGEATDFTLPPDKKPYVMMVVGVNGAGKTTTIGKLASQFTKKGLKVVLGAAD 155 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+AAIDQL++WADRT + ++GSD A++AY+ A + DV+IIDTAGRLHN Sbjct: 156 TFRAAAIDQLQVWADRTGVPMIKQQLGSDPASVAYDTLSSAVKQNADVVIIDTAGRLHNK 215 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM + K+ RV++++ P APH VL VLD +TGQNA Q + F T L +TK+DG Sbjct: 216 INLMNELSKIKRVMQKVIPDAPHEVLLVLDGSTGQNAFEQAKEFTKATEVTALAVTKLDG 275 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TA+GG +I I +IPV ++GVGEGI+DL+ F +F Sbjct: 276 TAKGGVVIGISDQFQIPVKYIGVGEGIDDLQIFNKYEF 313 >gi|283770297|ref|ZP_06343189.1| signal recognition particle receptor [Staphylococcus aureus subsp. aureus H19] gi|283460444|gb|EFC07534.1| signal recognition particle receptor [Staphylococcus aureus subsp. aureus H19] Length = 416 Score = 229 bits (583), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71 K G + +E + ++I+ R++D+ E LE++LI +D+G + EEL Sbjct: 87 KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146 Query: 72 TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 +R +D R ++ + E+ H+ S+ N + R +VIL+VGVNGVGKTT IG Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 204 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KVMLAAGDTFR+ AIDQLK+W +R D + GSD AA+ Y+A A Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K VD+LI DTAGRL N + LM + K+ RV+ R P APH L LDATTGQNAL Q Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F V TG+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381 >gi|257425289|ref|ZP_05601714.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257427949|ref|ZP_05604347.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430582|ref|ZP_05606964.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433343|ref|ZP_05609701.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus E1410] gi|257436185|ref|ZP_05612232.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus M876] gi|282914011|ref|ZP_06321798.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus M899] gi|282918933|ref|ZP_06326668.1| signal recognition particle receptor [Staphylococcus aureus subsp. aureus C427] gi|282924056|ref|ZP_06331732.1| signal recognition particle receptor [Staphylococcus aureus subsp. aureus C101] gi|293501043|ref|ZP_06666894.1| signal recognition particle receptor [Staphylococcus aureus subsp. aureus 58-424] gi|293526591|ref|ZP_06671276.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus M1015] gi|257271746|gb|EEV03884.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257274790|gb|EEV06277.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278710|gb|EEV09329.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281436|gb|EEV11573.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus E1410] gi|257284467|gb|EEV14587.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus M876] gi|282314028|gb|EFB44420.1| signal recognition particle receptor [Staphylococcus aureus subsp. aureus C101] gi|282316743|gb|EFB47117.1| signal recognition particle receptor [Staphylococcus aureus subsp. aureus C427] gi|282322079|gb|EFB52403.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus M899] gi|290920663|gb|EFD97726.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus M1015] gi|291096048|gb|EFE26309.1| signal recognition particle receptor [Staphylococcus aureus subsp. aureus 58-424] gi|312438387|gb|ADQ77458.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus TCH60] Length = 416 Score = 229 bits (583), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71 K G + +E + ++I+ R++D+ E LE++LI +D+G + EEL Sbjct: 87 KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146 Query: 72 TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 +R +D R ++ + E+ H+ S+ N + R +VIL+VGVNGVGKTT IG Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 204 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KVMLAAGDTFR+ AIDQLK+W +R D + GSD AA+ Y+A A Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K VD+LI DTAGRL N + LM + K+ RV+ R P APH L LDATTGQNAL Q Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F V TG+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381 >gi|167045714|gb|ABZ10361.1| putative SRP54-type protein, GTPase domain protein [uncultured marine bacterium HF4000_APKG2098] Length = 304 Score = 229 bits (583), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 122/279 (43%), Positives = 179/279 (64%), Gaps = 1/279 (0%) Query: 33 TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT-KRYAKDVSVQRVLYDVSEL 91 D+I R++D + +ELED LI+SD+GV A+++ E+ K K ++ S Sbjct: 23 NDLIFKRKIDKNMLDELEDFLIQSDVGVESAKELREKFANIKINPKSSEKDKIFKIFSNY 82 Query: 92 IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 ++L PL K ++P VIL+ GVNGVGKTT IGKL K + K++ A DTFR Sbjct: 83 AAEILKPLEKNLENLNENKPSVILIAGVNGVGKTTTIGKLGKILGQNNKKIVFGAADTFR 142 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 +AA++QL++WA R +AD + SE G+D A++AY+A + A+ D L+IDTAGRL NN L Sbjct: 143 AAAVNQLEVWAKRINADIIKSEEGADPASVAYKALEHAKNNNFDYLLIDTAGRLQNNKNL 202 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M K+ +V+K++D +APH +LDATTGQ+A+ QVE F + TG+IMTK+DGTA+ Sbjct: 203 MDEFKKITKVVKKIDSNAPHETFLILDATTGQSAINQVEEFKKITPITGIIMTKLDGTAK 262 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 GG L+ I K+P+ LG+GE +DL+ F ++ FS + Sbjct: 263 GGILLAIGKKFKLPIVALGMGEKEDDLQKFNSEYFSNAL 301 >gi|21282847|ref|NP_645935.1| signal recognition particle [Staphylococcus aureus subsp. aureus MW2] gi|49486074|ref|YP_043295.1| putative cell division protein [Staphylococcus aureus subsp. aureus MSSA476] gi|297208121|ref|ZP_06924552.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912201|ref|ZP_07129644.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus TCH70] gi|21204286|dbj|BAB94983.1| signal recognition particle [Staphylococcus aureus subsp. aureus MW2] gi|49244517|emb|CAG42946.1| putative cell division protein [Staphylococcus aureus subsp. aureus MSSA476] gi|296887364|gb|EFH26266.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886447|gb|EFK81649.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus TCH70] Length = 416 Score = 229 bits (583), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71 K G + +E + ++I+ R++D+ E LE++LI +D+G + EEL Sbjct: 87 KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146 Query: 72 TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 +R +D R ++ + E+ H+ S+ N + R +VIL+VGVNGVGKTT IG Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 204 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KVMLAAGDTFR+ AIDQLK+W +R D + GSD AA+ Y+A A Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K VD+LI DTAGRL N + LM + K+ RV+ R P APH L LDATTGQNAL Q Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F V TG+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381 >gi|82750839|ref|YP_416580.1| signal recognition particle protein [Staphylococcus aureus RF122] gi|258423924|ref|ZP_05686809.1| signal recognition particle protein [Staphylococcus aureus A9635] gi|82656370|emb|CAI80788.1| signal recognition particle protein [Staphylococcus aureus RF122] gi|257845953|gb|EEV69982.1| signal recognition particle protein [Staphylococcus aureus A9635] gi|298694528|gb|ADI97750.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus ED133] gi|302332839|gb|ADL23032.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus JKD6159] Length = 416 Score = 229 bits (583), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71 K G + +E + ++I+ R++D+ E LE++LI +D+G + EEL Sbjct: 87 KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146 Query: 72 TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 +R +D R ++ + E+ H+ S+ N + R +VIL+VGVNGVGKTT IG Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 204 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KVMLAAGDTFR+ AIDQLK+W +R D + GSD AA+ Y+A A Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K VD+LI DTAGRL N + LM + K+ RV+ R P APH L LDATTGQNAL Q Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F V TG+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381 >gi|165922511|ref|ZP_02219682.1| signal recognition particle-docking protein FtsY [Coxiella burnetii RSA 334] gi|165916716|gb|EDR35320.1| signal recognition particle-docking protein FtsY [Coxiella burnetii RSA 334] Length = 324 Score = 229 bits (583), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 128/310 (41%), Positives = 193/310 (62%), Gaps = 4/310 (1%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVA 61 N + + W+ +L + T +L +G+++++ ++ +D + EELE +L+ +DIG+ Sbjct: 14 NNETSKPKKGWLGRLNESLKRTRSRLTDGLSNLVLGKKTIDASLLEELEMILLSADIGIE 73 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 Q I+ L + K +S + L D ++ + +L P K + + S P VIL VGVN Sbjct: 74 ATQSILNNLSQQVSRKSLSDPKALIDALKIELLNILEPCQK--HLEISASPFVILTVGVN 131 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT I KL+ +VMLAAGDTFR+AAI+QL+ W R +A + G+D+A+ Sbjct: 132 GVGKTTTIAKLAHFYQSQKKRVMLAAGDTFRAAAIEQLQTWGQRNNAPVSAQQPGADSAS 191 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + Y+A + A A+ D+LI DTAGRLH S LM + K+ RV+K+++P APH L VLDA Sbjct: 192 VIYDAMEAATARHYDLLIADTAGRLHTQSHLMDELAKIKRVMKKINPDAPHETLLVLDAG 251 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNA+ Q E FH G TG+ +TK+DGTA+GG + I ++P+ F+G+GE I DL+ Sbjct: 252 TGQNAINQAEQFHEHIGLTGIAITKLDGTAKGGVIFAIAKKMQLPIRFIGMGEKIEDLKS 311 Query: 301 FVAKDFSAVI 310 F AK+F A + Sbjct: 312 FNAKEFIAAL 321 >gi|262048133|ref|ZP_06021020.1| signal recognition particle [Staphylococcus aureus D30] gi|259163699|gb|EEW48254.1| signal recognition particle [Staphylococcus aureus D30] Length = 416 Score = 229 bits (583), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71 K G + +E + ++I+ R++D+ E LE++LI +D+G + EEL Sbjct: 87 KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146 Query: 72 TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 +R +D R ++ + E+ H+ S+ N + R +VIL+VGVNGVGKTT IG Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 204 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KVMLAAGDTFR+ AIDQLK+W +R D + GSD AA+ Y+A A Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K VD+LI DTAGRL N + LM + K+ RV+ R P APH L LDATTGQNAL Q Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F V TG+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381 >gi|253731853|ref|ZP_04866018.1| Sec family type I general secretory pathway protein signal recognition particle protein FtsY [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733527|ref|ZP_04867692.1| Sec family type I general secretory pathway protein signal recognition particle protein FtsY [Staphylococcus aureus subsp. aureus TCH130] gi|253724405|gb|EES93134.1| Sec family type I general secretory pathway protein signal recognition particle protein FtsY [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728581|gb|EES97310.1| Sec family type I general secretory pathway protein signal recognition particle protein FtsY [Staphylococcus aureus subsp. aureus TCH130] Length = 416 Score = 229 bits (583), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71 K G + +E + ++I+ R++D+ E LE++LI +D+G + EEL Sbjct: 87 KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146 Query: 72 TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 +R +D R ++ + E+ H+ S+ N + R +VIL+VGVNGVGKTT IG Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 204 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KVMLAAGDTFR+ AIDQLK+W +R D + GSD AA+ Y+A A Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K VD+LI DTAGRL N + LM + K+ RV+ R P APH L LDATTGQNAL Q Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F V TG+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381 >gi|329733588|gb|EGG69916.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus subsp. aureus 21193] Length = 416 Score = 229 bits (583), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71 K G + +E + ++I+ R++D+ E LE++LI +D+G + EEL Sbjct: 87 KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146 Query: 72 TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 +R +D R ++ + E+ H+ S+ N + R +VIL+VGVNGVGKTT IG Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 204 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KVMLAAGDTFR+ AIDQLK+W +R D + GSD AA+ Y+A A Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K VD+LI DTAGRL N + LM + K+ RV+ R P APH L LDATTGQNAL Q Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F V TG+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381 >gi|226199570|ref|ZP_03795127.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei Pakistan 9] gi|225928451|gb|EEH24481.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei Pakistan 9] Length = 476 Score = 229 bits (583), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 131/302 (43%), Positives = 186/302 (61%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + ++ L Sbjct: 181 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGALR 236 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + EL+ ++L PL K + +P V+++ GVNG GKTT IGK Sbjct: 237 EKVRAGRLTDPQQVKDALRELLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 295 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 296 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 354 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 355 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 414 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ + Sbjct: 415 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 474 Query: 311 TG 312 G Sbjct: 475 LG 476 >gi|289578456|ref|YP_003477083.1| signal recognition particle-docking protein FtsY [Thermoanaerobacter italicus Ab9] gi|297544732|ref|YP_003677034.1| signal recognition particle-docking protein FtsY [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528169|gb|ADD02521.1| signal recognition particle-docking protein FtsY [Thermoanaerobacter italicus Ab9] gi|296842507|gb|ADH61023.1| signal recognition particle-docking protein FtsY [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 319 Score = 228 bits (582), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 134/314 (42%), Positives = 200/314 (63%), Gaps = 17/314 (5%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVA 63 + A E + +K+ +G T L I I++ R++D+ + EELE++LI +DIG++ Sbjct: 13 ETAEEKKGFFQKIKEGLLKTRENLTSKIDSIVTIGRKIDEELLEELEEILILADIGISTT 72 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILV 116 KI+E + K AK++ + YD S++ ++++L KPF P VIL+ Sbjct: 73 SKIIEGIRQK--AKEMKI----YDASQIKELLAEEVYEILQKDVKPFTL---TSPMVILI 123 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGKL+ G KVMLAAGDTFR+AAIDQL+IWA+R + + + GS Sbjct: 124 VGVNGVGKTTTIGKLAYMYKKEGKKVMLAAGDTFRAAAIDQLEIWAERVNCPIIKHQEGS 183 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D A++ ++ + ++A+ +D+LI DTAGRLHN LM + K+ RV+ R P A V Sbjct: 184 DPASVIFDGIQASKARGIDILICDTAGRLHNKKNLMEELRKIRRVIDREYPEARVETFLV 243 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDATTGQNAL+Q ++F V+ TG+++TK+DGTA+GG ++ I +P+ ++G+GEGI Sbjct: 244 LDATTGQNALQQAKIFKEVSDITGIVLTKLDGTAKGGIVVAIKSELNVPIRYIGMGEGIE 303 Query: 297 DLEPFVAKDFSAVI 310 DL+ F AK F + I Sbjct: 304 DLQAFDAKSFVSAI 317 >gi|312888456|ref|ZP_07748030.1| signal recognition particle-docking protein FtsY [Mucilaginibacter paludis DSM 18603] gi|311299084|gb|EFQ76179.1| signal recognition particle-docking protein FtsY [Mucilaginibacter paludis DSM 18603] Length = 321 Score = 228 bits (582), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 183/297 (61%), Gaps = 9/297 (3%) Query: 17 LTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-- 73 L G T IT ++ + +DD V +ELE++L+ SD+GV KI++ + + Sbjct: 20 LDTGLEKTKENFFSKITKAVAGKTTVDDDVLDELEEILVTSDVGVTTTLKIIDRIQARVA 79 Query: 74 --RYAKDVSVQRVLYDVSELIHKMLMPLSKPF-NWDF-SHRPHVILVVGVNGVGKTTVIG 129 +Y + +L D E+ + S F N+++ H+P+VI+VVGVNGVGKTT IG Sbjct: 80 RDKYLGTSELNNLLRD--EIQQLLAENNSNDFQNFEYGQHKPYVIMVVGVNGVGKTTTIG 137 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ K+ AG +V+L A DTFR+AA+DQ+K+W +R V +GSD A++A++ K A Sbjct: 138 KLAHKLKQAGNQVVLGAADTFRAAAVDQIKLWGERVGVRVVAQPMGSDPASVAFDTLKSA 197 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A DV+IIDTAGRLHN LM + K+ V+ ++ P APH +L VLDA+TGQNA+ Q Sbjct: 198 VANNDDVVIIDTAGRLHNKVNLMNELTKIKNVMLKVIPDAPHEILLVLDASTGQNAIEQC 257 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F L +TK+DGTA+GG +I I KIPV ++GVGE +NDL+ F K F Sbjct: 258 KQFTQATDVNALALTKLDGTAKGGVVIGISDQFKIPVKYIGVGEAMNDLQLFDRKGF 314 >gi|330685650|gb|EGG97291.1| signal recognition particle-docking protein FtsY [Staphylococcus epidermidis VCU121] Length = 414 Score = 228 bits (582), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 124/299 (41%), Positives = 186/299 (62%), Gaps = 12/299 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K G + +E + ++I+ R++D+ E LE++LI +D+G ++ EEL + Sbjct: 86 KFKAGLEKSRENFQEQLNNLIARYRKVDEEFFEALEEMLITADVGFNTVMQLTEELRAEA 145 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTV 127 +++ + D+ E+I + ++ + S+ N + R +VIL+VGVNGVGKTT Sbjct: 146 QRRNI---QETEDLREVIVEKIVEIYHQEDDKSEAMNLE-DGRLNVILMVGVNGVGKTTT 201 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ + G KVMLAAGDTFR+ AI+QLK+W +R + + GSD AA+ Y+A Sbjct: 202 IGKLAYRYKMEGKKVMLAAGDTFRAGAIEQLKVWGERVGVEVISQSEGSDPAAVMYDAIN 261 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ K+VD+LI DTAGRL N S LM + K+ RV+ R P APH L LDATTGQNAL Sbjct: 262 AAKNKQVDILICDTAGRLQNKSNLMQELEKVKRVIGRAVPDAPHEALLCLDATTGQNALS 321 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q F V +G+++TK+DGTA+GG ++ I KIPV ++G+GE ++DL+PF + + Sbjct: 322 QARTFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELKIPVKYVGLGEKLDDLQPFNPESY 380 >gi|283470448|emb|CAQ49659.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus ST398] Length = 416 Score = 228 bits (582), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 129/311 (41%), Positives = 187/311 (60%), Gaps = 9/311 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71 K G + +E + ++I+ R++D+ E LE++LI +D+G + EEL Sbjct: 87 KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146 Query: 72 TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 +R +D R ++ + E+ H+ S+ N + R +VIL+VGVNGVGKTT IG Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 204 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KVMLAAGDTFR+ AIDQLK+W +R D + GSD AA+ Y+A A Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K VD+LI DTAGRL N + LM + K+ RV+ R P APH L LDATTGQNAL Q Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF-SA 308 F V TG+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + + Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYVNG 384 Query: 309 VITGCLDYGEE 319 + ++ EE Sbjct: 385 LFADMIEQNEE 395 >gi|57651804|ref|YP_186110.1| cell division protein FtsY, putative [Staphylococcus aureus subsp. aureus COL] gi|87161637|ref|YP_493825.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194942|ref|YP_499742.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221357|ref|YP_001332179.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus subsp. aureus str. Newman] gi|161509407|ref|YP_001575066.1| type I general secretory pathway protein signal recognition particle protein FtsY [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142025|ref|ZP_03566518.1| type I general secretory pathway protein signal recognition particle protein FtsY [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452533|ref|ZP_05700539.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus A5948] gi|262051864|ref|ZP_06024080.1| signal recognition particle [Staphylococcus aureus 930918-3] gi|282920018|ref|ZP_06327747.1| signal recognition particle receptor [Staphylococcus aureus A9765] gi|284024159|ref|ZP_06378557.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus subsp. aureus 132] gi|294848229|ref|ZP_06788976.1| signal recognition particle receptor [Staphylococcus aureus A9754] gi|304381201|ref|ZP_07363854.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57285990|gb|AAW38084.1| cell division protein FtsY, putative [Staphylococcus aureus subsp. aureus COL] gi|87127611|gb|ABD22125.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202500|gb|ABD30310.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374157|dbj|BAF67417.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus subsp. aureus str. Newman] gi|160368216|gb|ABX29187.1| Sec family Type I general secretory pathway protein signal recognition particle protein FtsY [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257859751|gb|EEV82593.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus A5948] gi|259160265|gb|EEW45293.1| signal recognition particle [Staphylococcus aureus 930918-3] gi|282594734|gb|EFB99718.1| signal recognition particle receptor [Staphylococcus aureus A9765] gi|294825029|gb|EFG41451.1| signal recognition particle receptor [Staphylococcus aureus A9754] gi|302751058|gb|ADL65235.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340184|gb|EFM06125.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198474|gb|EFU28803.1| Sec family Type I general secretory pathway protein signal recognition particle protein FtsY [Staphylococcus aureus subsp. aureus CGS01] gi|320140949|gb|EFW32796.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus subsp. aureus MRSA131] gi|320144336|gb|EFW36102.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus subsp. aureus MRSA177] gi|329313904|gb|AEB88317.1| Signal recognition particle-docking protein FtsY [Staphylococcus aureus subsp. aureus T0131] gi|329724745|gb|EGG61250.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus subsp. aureus 21189] Length = 416 Score = 228 bits (582), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71 K G + +E + ++I+ R++D+ E LE++LI +D+G + EEL Sbjct: 87 KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146 Query: 72 TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 +R +D R ++ + E+ H+ S+ N + R +VIL+VGVNGVGKTT IG Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 204 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KVMLAAGDTFR+ AIDQLK+W +R D + GSD AA+ Y+A A Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K VD+LI DTAGRL N + LM + K+ RV+ R P APH L LDATTGQNAL Q Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F V TG+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381 >gi|213963637|ref|ZP_03391889.1| signal recognition particle-docking protein FtsY [Capnocytophaga sputigena Capno] gi|213953765|gb|EEB65095.1| signal recognition particle-docking protein FtsY [Capnocytophaga sputigena Capno] Length = 320 Score = 228 bits (582), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 124/278 (44%), Positives = 177/278 (63%), Gaps = 7/278 (2%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELI 92 ++ ++DD V ++LE++LI SD+GV KI++ + R AKD + + + E I Sbjct: 37 VMGKSKVDDEVLDDLEEVLIASDVGVNTTLKIIDRI-EARVAKDKYLGTSELNTILREEI 95 Query: 93 HKMLMPLSKPFNWDF----SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 +L DF +P+V++VVGVNG GKTT IGKL+ + + GLKV+L A D Sbjct: 96 AGLLSETHTGEATDFVLPADKKPYVMMVVGVNGAGKTTTIGKLASQFTKKGLKVVLGAAD 155 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+AAIDQL++WADRT + ++GSD A++AY+ A + DV+IIDTAGRLHN Sbjct: 156 TFRAAAIDQLQVWADRTGVPMIKQQLGSDPASVAYDTLSSAVKQNADVVIIDTAGRLHNK 215 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM + K+ RV++++ P APH VL VLD +TGQNA Q + F T L +TK+DG Sbjct: 216 INLMNELSKIKRVMQKVLPDAPHEVLLVLDGSTGQNAFEQAKEFTKATEVTSLAVTKLDG 275 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TA+GG +I I +IPV ++GVGEGI+DL+ F +F Sbjct: 276 TAKGGVVIGISDQFQIPVKYIGVGEGIDDLQIFNKYEF 313 >gi|307728375|ref|YP_003905599.1| signal recognition particle-docking protein FtsY [Burkholderia sp. CCGE1003] gi|307582910|gb|ADN56308.1| signal recognition particle-docking protein FtsY [Burkholderia sp. CCGE1003] Length = 395 Score = 228 bits (582), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 135/307 (43%), Positives = 185/307 (60%), Gaps = 7/307 (2%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 AS SW+ +L G + TS L T I ++D+ + EELE L+ SD GV + + Sbjct: 94 ASAKRSWLTRLKTGLSKTSSSL----TGIFVGTKIDEDLYEELETALLMSDAGVDATEFL 149 Query: 67 VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 +E L K R + Q+V + L+ +L PL K + +P V+++ GVNG GKT Sbjct: 150 LEALREKVRTERLTEPQQVKAALRALLVDLLKPLEKSLMLGRA-KPLVMMIAGVNGAGKT 208 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K + V+LAAGDTFR+AA +QL IW R + V E G D AA+ ++A Sbjct: 209 TSIGKLAKHLQSFNQSVLLAAGDTFRAAAREQLAIWGQRNNVTVVAQESG-DPAAVIFDA 267 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+A+K+DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNA Sbjct: 268 VGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTGQNA 327 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QV+ F G TGLI+TK+DGTA+GG L I IPVYF+GVGE + DL+PF A++ Sbjct: 328 LAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGERVEDLQPFSAEE 387 Query: 306 FSAVITG 312 FS + G Sbjct: 388 FSDALLG 394 >gi|332292573|ref|YP_004431182.1| signal recognition particle-docking protein FtsY [Krokinobacter diaphorus 4H-3-7-5] gi|332170659|gb|AEE19914.1| signal recognition particle-docking protein FtsY [Krokinobacter diaphorus 4H-3-7-5] Length = 317 Score = 228 bits (582), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 125/296 (42%), Positives = 188/296 (63%), Gaps = 6/296 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIV---EELLT 72 L KG T + ++ ++ + ++DD V + LE++L+ SD+GV K++ EE ++ Sbjct: 16 LDKGLEKTKTSFFDKMSKAVAGKSKVDDDVLDNLEEVLVTSDVGVKTTLKVITRIEERVS 75 Query: 73 K-RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + +Y + ++L + ++ L+ + + + F +PHVI+VVGVNGVGKTT IGK Sbjct: 76 RDKYVGTDELNQILREEIAGLLSETNVGNATEFEIPKGTKPHVIMVVGVNGVGKTTTIGK 135 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + GLKV+L A DTFR+AAIDQL++WADR V ++GSD A++A++A + Sbjct: 136 LAYQFKKQGLKVVLGAADTFRAAAIDQLQVWADRVDVPIVKQQMGSDPASVAFDALESGV 195 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + DV+IIDTAGRLHN LM + K+ RV++++ APH VL VLD +TGQNA Q + Sbjct: 196 NQNADVIIIDTAGRLHNKVNLMNELTKVKRVMQKVVGDAPHDVLLVLDGSTGQNAFEQAK 255 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F A T L +TK+DGTA+GG +I I +IPV ++GVGEGI DL+ F +F Sbjct: 256 QFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIEDLQVFNKVEF 311 >gi|167892738|ref|ZP_02480140.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 7894] Length = 354 Score = 228 bits (582), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 130/302 (43%), Positives = 186/302 (61%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + +++ L Sbjct: 59 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDALR 114 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ ++L PL K + +P V+++ GVNG GKTT IGK Sbjct: 115 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 173 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 174 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 232 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 233 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 292 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ + Sbjct: 293 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 352 Query: 311 TG 312 G Sbjct: 353 LG 354 >gi|15924225|ref|NP_371759.1| signal recognition particle [Staphylococcus aureus subsp. aureus Mu50] gi|15926818|ref|NP_374351.1| signal recognition particle [Staphylococcus aureus subsp. aureus N315] gi|148267726|ref|YP_001246669.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus subsp. aureus JH9] gi|150393784|ref|YP_001316459.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus subsp. aureus JH1] gi|156979556|ref|YP_001441815.1| signal recognition particle [Staphylococcus aureus subsp. aureus Mu3] gi|253315593|ref|ZP_04838806.1| signal recognition particle [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006022|ref|ZP_05144623.2| signal recognition particle [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795709|ref|ZP_05644688.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus A9781] gi|258415933|ref|ZP_05682203.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus A9763] gi|258419680|ref|ZP_05682647.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus A9719] gi|258434851|ref|ZP_05688925.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus A9299] gi|258444573|ref|ZP_05692902.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus A8115] gi|258447594|ref|ZP_05695738.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus A6300] gi|258454815|ref|ZP_05702779.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus A5937] gi|269202851|ref|YP_003282120.1| cell division protein FtsY, putative [Staphylococcus aureus subsp. aureus ED98] gi|282892722|ref|ZP_06300957.1| signal recognition particle receptor [Staphylococcus aureus A8117] gi|282927576|ref|ZP_06335192.1| signal recognition particle receptor [Staphylococcus aureus A10102] gi|295407174|ref|ZP_06816975.1| signal recognition particle receptor [Staphylococcus aureus A8819] gi|296274792|ref|ZP_06857299.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus subsp. aureus MR1] gi|297245939|ref|ZP_06929798.1| signal recognition particle receptor [Staphylococcus aureus A8796] gi|13701035|dbj|BAB42330.1| signal recognition particle [Staphylococcus aureus subsp. aureus N315] gi|14247005|dbj|BAB57397.1| signal recognition particle [Staphylococcus aureus subsp. aureus Mu50] gi|147740795|gb|ABQ49093.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus subsp. aureus JH9] gi|149946236|gb|ABR52172.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus subsp. aureus JH1] gi|156721691|dbj|BAF78108.1| signal recognition particle [Staphylococcus aureus subsp. aureus Mu3] gi|257789681|gb|EEV28021.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus A9781] gi|257839269|gb|EEV63743.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus A9763] gi|257844265|gb|EEV68647.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus A9719] gi|257849212|gb|EEV73194.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus A9299] gi|257850066|gb|EEV74019.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus A8115] gi|257853785|gb|EEV76744.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus A6300] gi|257863198|gb|EEV85962.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus A5937] gi|262075141|gb|ACY11114.1| cell division protein FtsY, putative [Staphylococcus aureus subsp. aureus ED98] gi|282590579|gb|EFB95656.1| signal recognition particle receptor [Staphylococcus aureus A10102] gi|282764719|gb|EFC04844.1| signal recognition particle receptor [Staphylococcus aureus A8117] gi|285816917|gb|ADC37404.1| Signal recognition particle receptor protein FtsY (=alpha subunit) [Staphylococcus aureus 04-02981] gi|294968027|gb|EFG44055.1| signal recognition particle receptor [Staphylococcus aureus A8819] gi|297177103|gb|EFH36357.1| signal recognition particle receptor [Staphylococcus aureus A8796] gi|312829629|emb|CBX34471.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131028|gb|EFT87012.1| signal recognition particle [Staphylococcus aureus subsp. aureus CGS03] gi|329727415|gb|EGG63871.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus subsp. aureus 21172] Length = 416 Score = 228 bits (582), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71 K G + +E + ++I+ R++D+ E LE++LI +D+G + EEL Sbjct: 87 KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146 Query: 72 TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 +R +D R ++ + E+ H+ S+ N + R +VIL+VGVNGVGKTT IG Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNIE-DGRLNVILMVGVNGVGKTTTIG 204 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KVMLAAGDTFR+ AIDQLK+W +R D + GSD AA+ Y+A A Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K VD+LI DTAGRL N + LM + K+ RV+ R P APH L LDATTGQNAL Q Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F V TG+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381 >gi|303235657|ref|ZP_07322264.1| signal recognition particle-docking protein FtsY [Prevotella disiens FB035-09AN] gi|302484104|gb|EFL47092.1| signal recognition particle-docking protein FtsY [Prevotella disiens FB035-09AN] Length = 318 Score = 228 bits (582), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 129/297 (43%), Positives = 185/297 (62%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG +T + I ++ + ++DD V + LE++LI SD+GV KI+E + +R Sbjct: 15 LDKGLETTKQSVFSKIARAVAGKSKVDDEVLDNLEEILITSDVGVDTTVKIIERI-EERI 73 Query: 76 AKDVSVQRV-LYDVSELIHKMLMPLSKPFN---WDF--SHRPHVILVVGVNGVGKTTVIG 129 A+D V L DV L+ + N WD H+P+VIL+VGVNGVGKTT IG Sbjct: 74 ARDKYVSTSELNDVLRAEIANLLTENNTENAEDWDLPTDHKPYVILIVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG KV L A DTFR+AA++Q++IW DR + ++GSD A++A++ + A Sbjct: 134 KLAYQFKKAGKKVYLGAADTFRAAAVEQIQIWGDRVGVPVIKQQMGSDPASVAFDTLQSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A DV+IIDTAGRLHN LM + K+ V+K++ P AP V+ VLD +TGQNA Q Sbjct: 194 KANGADVVIIDTAGRLHNKVGLMNELKKIKEVMKKVLPEAPDDVMLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F +V T L +TK+DGTA+GG +I I K+PV ++G+GEGI DL+ F + F Sbjct: 254 KQFASVTQITSLAITKLDGTAKGGVVIGISDQLKVPVRYIGLGEGIEDLQLFNKEQF 310 >gi|261379617|ref|ZP_05984190.1| signal recognition particle-docking protein FtsY [Neisseria subflava NJ9703] gi|284798099|gb|EFC53446.1| signal recognition particle-docking protein FtsY [Neisseria subflava NJ9703] Length = 510 Score = 228 bits (582), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 126/303 (41%), Positives = 185/303 (61%), Gaps = 14/303 (4%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW +L +G + K+ + + + ++D+ + EELE +LI SD+G+ E Sbjct: 209 LSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEAT-----EY 263 Query: 71 LTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 L K VS+ + L D +EL ++ ++ PL KP + P VI++ G+NG G Sbjct: 264 LMKDVRDRVSL-KGLKDGNELRGALKDALYDLIKPLEKPLVLPETREPFVIMLAGINGAG 322 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ + Sbjct: 323 KTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNV-TVISQTTGDSAAVCF 381 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A + A+A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQ Sbjct: 382 DAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQ 441 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NA+ QV+ F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A Sbjct: 442 NAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFNA 501 Query: 304 KDF 306 K F Sbjct: 502 KAF 504 >gi|323441010|gb|EGA98717.1| signal recognition particle protein [Staphylococcus aureus O11] gi|323442327|gb|EGA99957.1| signal recognition particle protein [Staphylococcus aureus O46] Length = 416 Score = 228 bits (582), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71 K G + +E + ++I+ R++D+ E LE++LI +D+G + EEL Sbjct: 87 KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146 Query: 72 TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 +R +D R ++ + E+ H+ S+ N + R +VIL+VGVNGVGKTT IG Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNIE-DGRLNVILMVGVNGVGKTTTIG 204 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KVMLAAGDTFR+ AIDQLK+W +R D + GSD AA+ Y+A A Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K VD+LI DTAGRL N + LM + K+ RV+ R P APH L LDATTGQNAL Q Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F V TG+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381 >gi|241760701|ref|ZP_04758793.1| cell division protein FtsY [Neisseria flavescens SK114] gi|241318882|gb|EER55408.1| cell division protein FtsY [Neisseria flavescens SK114] Length = 510 Score = 228 bits (582), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 127/308 (41%), Positives = 186/308 (60%), Gaps = 14/308 (4%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 V LSW +L +G + K+ + + + ++D+ + EELE +LI SD+G+ Sbjct: 204 VEEHKLSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEAT-- 261 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVG 118 E L K VS+ + L D +EL ++ ++ PL KP + P VI++ G Sbjct: 262 ---EYLMKDVRDRVSL-KGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAG 317 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 +NG GKTT IGKL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+ Sbjct: 318 INGAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDS 376 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A + A+A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLD Sbjct: 377 AAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLD 436 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A GQNA+ QV+ F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL Sbjct: 437 ANIGQNAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDL 496 Query: 299 EPFVAKDF 306 PF AK F Sbjct: 497 RPFNAKAF 504 >gi|239636286|ref|ZP_04677288.1| cell division protein FtsY [Staphylococcus warneri L37603] gi|239597641|gb|EEQ80136.1| cell division protein FtsY [Staphylococcus warneri L37603] Length = 414 Score = 228 bits (582), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 124/299 (41%), Positives = 186/299 (62%), Gaps = 12/299 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K G + +E + ++I+ R++D+ E LE++LI +D+G ++ EEL + Sbjct: 86 KFKAGLEKSRENFQEQLNNLIARYRKVDEEFFEALEEMLITADVGFNTVMQLTEELRAEA 145 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTV 127 +++ + D+ E+I + ++ + S+ N + R +VIL+VGVNGVGKTT Sbjct: 146 QRRNI---QETEDLREVIVEKIVEIYHQEDDKSEAMNLE-DGRLNVILMVGVNGVGKTTT 201 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ + G KVMLAAGDTFR+ AI+QLK+W +R + + GSD AA+ Y+A Sbjct: 202 IGKLAYRYKMEGKKVMLAAGDTFRAGAIEQLKVWGERVGVEVISQSEGSDPAAVMYDAIN 261 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ K+VD+LI DTAGRL N S LM + K+ RV+ R P APH L LDATTGQNAL Sbjct: 262 AAKNKQVDILICDTAGRLQNKSNLMQELEKVKRVIGRAVPDAPHEALLCLDATTGQNALS 321 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q F V +G+++TK+DGTA+GG ++ I KIPV ++G+GE ++DL+PF + + Sbjct: 322 QARTFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELKIPVKYVGLGEKLDDLQPFNPESY 380 >gi|167901234|ref|ZP_02488439.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei NCTC 13177] Length = 339 Score = 228 bits (581), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 130/302 (43%), Positives = 186/302 (61%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + +++ L Sbjct: 44 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDALR 99 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ ++L PL K + +P V+++ GVNG GKTT IGK Sbjct: 100 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 158 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 159 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 217 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 218 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 277 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ + Sbjct: 278 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 337 Query: 311 TG 312 G Sbjct: 338 LG 339 >gi|56476189|ref|YP_157778.1| cell division protein FtsY [Aromatoleum aromaticum EbN1] gi|56312232|emb|CAI06877.1| Cell division protein FtsY [Aromatoleum aromaticum EbN1] Length = 386 Score = 228 bits (581), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 128/300 (42%), Positives = 189/300 (63%), Gaps = 11/300 (3%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW +L G + T +L G+ + R++D+ + EELE L+ +D GV Q ++ EL Sbjct: 79 SWSERLKAGLSRTRQQLGGGLASLFGRRKIDEELLEELEATLLMADCGVEATQHLLGEL- 137 Query: 72 TKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 KR+ +D +Q+ L D +H +L+PL +P + H P++I++ GVNG GKTT Sbjct: 138 RKRWKRDRLETADQLQKALADE---LHAILLPLEEPLDVS-GHSPYIIMIAGVNGSGKTT 193 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+K G V+LAAGDTFR+AA +QL W +R + + + G D+AA+ ++A Sbjct: 194 SIGKLAKYFQAQGRSVLLAAGDTFRAAAREQLMTWGERNNVTVIAQD-GGDSAAVIFDAI 252 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A+A+++DV++ DTAGRL LM I K+ RV+ + P PH VL VLDA GQNAL Sbjct: 253 NAAKARRIDVVLADTAGRLPTQLHLMDEIAKVKRVIAKASPSGPHEVLLVLDANIGQNAL 312 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QV+ F + G TGL++TK+DGTA+GG + I + P+ F+GVGEGI+DL+PF A++F Sbjct: 313 AQVKAFDSAIGVTGLVVTKLDGTAKGGVVAAIARQYPRPLRFIGVGEGIDDLQPFKAREF 372 >gi|187922585|ref|YP_001894227.1| signal recognition particle-docking protein FtsY [Burkholderia phytofirmans PsJN] gi|187713779|gb|ACD15003.1| signal recognition particle-docking protein FtsY [Burkholderia phytofirmans PsJN] Length = 386 Score = 228 bits (581), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 134/302 (44%), Positives = 183/302 (60%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW+ +L G + TS L T I ++D+ + EELE L+ SD GV + ++E L Sbjct: 90 SWLTRLKTGLSKTSSNL----TGIFVGTKIDEDLYEELETALLMSDAGVDATEFLLEALR 145 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + V Q+V + L+ +L PL K + P V+++ GVNG GKTT IGK Sbjct: 146 EKVRAERLVDPQQVKTALRTLLVDLLKPLEKSLMLGRAQ-PLVMMIAGVNGAGKTTSIGK 204 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW R + V E G D AA+ ++A A+ Sbjct: 205 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGQRNNVTVVSQESG-DPAAVIFDAVGAAR 263 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+K+DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 264 ARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTGQNALAQVK 323 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+GVGE + DL+PF A++FS + Sbjct: 324 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSDAL 383 Query: 311 TG 312 G Sbjct: 384 LG 385 >gi|169827096|ref|YP_001697254.1| cell division protein ftsY-like protein [Lysinibacillus sphaericus C3-41] gi|168991584|gb|ACA39124.1| Cell division protein ftsY-like protein [Lysinibacillus sphaericus C3-41] Length = 448 Score = 228 bits (581), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 125/304 (41%), Positives = 187/304 (61%), Gaps = 13/304 (4%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 S +K G T + D+++ R++D+ EELEDLL+++D+G +++++L Sbjct: 131 SITQKFKAGLEKTRNSFTSKVNDLVARYRKVDEDFFEELEDLLLQADVGFETVMELMDKL 190 Query: 71 ---LTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + ++ KD + + L ++ E + L+ L+ + + + VIL VGVNGV Sbjct: 191 RFEVQRKNIKDTNGIQTLISEKLVEIYEQGEEDLIELNMQPDGELT----VILFVGVNGV 246 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+ ++ G V+LAAGDTFR+ AIDQL++W DR + + GSD AA+ Sbjct: 247 GKTTTIGKLAHRLKSQGKTVVLAAGDTFRAGAIDQLQVWGDRVGCEVIKQSEGSDPAAVM 306 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+ +K DVLI DTAGRL N LM + K+ RV+ R P APH VL LDATTG Sbjct: 307 YDAIRAAKNRKADVLICDTAGRLQNKVNLMNELEKVHRVISREIPSAPHEVLLALDATTG 366 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL Q + F TG+++TK+DGTA+GG ++ I IPV F+G+GE ++DL+PF Sbjct: 367 QNALVQAQTFKEATNVTGIVLTKLDGTAKGGIVLAIRNKLHIPVKFVGLGEKMDDLQPFD 426 Query: 303 AKDF 306 A+ + Sbjct: 427 AERY 430 >gi|296124401|ref|YP_003632179.1| signal recognition particle-docking protein FtsY [Planctomyces limnophilus DSM 3776] gi|296016741|gb|ADG69980.1| signal recognition particle-docking protein FtsY [Planctomyces limnophilus DSM 3776] Length = 313 Score = 228 bits (581), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 133/312 (42%), Positives = 181/312 (58%), Gaps = 14/312 (4%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + KL G TS L+ I D+ S L + E+ E LI++D+GVA +IV + Sbjct: 1 MGFFDKLKAGLKKTSQLLRTDIRDLFKSGEILSEKHLEQFEARLIQTDMGVAATTRIVSD 60 Query: 70 LLTKRYAKDV-----------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118 L + + + +V+ +L S + PLS P N+ S RP VILV G Sbjct: 61 LRQEHLGRTMKVDELWATVRATVKSILKGTSTTTYDPEQPLS-PLNFSES-RPTVILVAG 118 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNG GKTT I KL++ ++ G V+LAAGDTFR+AA++QL +W+ R D V G+D Sbjct: 119 VNGTGKTTTIAKLARLLTSQGKTVLLAAGDTFRAAAVEQLTLWSQRLGCDIVTKPAGTDP 178 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+A+ + A VDVLIIDTAGRLHN LM + K+ RV+ + P APH L V+D Sbjct: 179 AAVAFAGCEAAVKAGVDVLIIDTAGRLHNQQNLMQELEKIRRVIAKQIPDAPHESLLVID 238 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 ATTGQN L Q + F TTGLI++K+DGTARGG + I IPV ++GVGE I+DL Sbjct: 239 ATTGQNGLNQAQAFSKAVSTTGLILSKLDGTARGGVAVAIRQQMGIPVKYVGVGEAIDDL 298 Query: 299 EPFVAKDFSAVI 310 E F F+ + Sbjct: 299 EVFDPDQFAEAL 310 >gi|167617829|ref|ZP_02386460.1| signal recognition particle-docking protein FtsY [Burkholderia thailandensis Bt4] Length = 328 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 132/302 (43%), Positives = 184/302 (60%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SWI +L G A TS IT++ + ++DD + EELE L+ SD GV + ++ L Sbjct: 33 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGVDATEHLLGALR 88 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ ++L PL K + P V+++ GVNG GKTT IGK Sbjct: 89 EKVRTGRLTDPQQVKDALRGLLVELLTPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSIGK 147 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 148 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 206 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 207 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 266 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+GVGE + DL+PF A++F+ + Sbjct: 267 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFADAL 326 Query: 311 TG 312 G Sbjct: 327 LG 328 >gi|161523672|ref|YP_001578684.1| signal recognition particle-docking protein FtsY [Burkholderia multivorans ATCC 17616] gi|189351559|ref|YP_001947187.1| signal recognition particle receptor [Burkholderia multivorans ATCC 17616] gi|160341101|gb|ABX14187.1| signal recognition particle-docking protein FtsY [Burkholderia multivorans ATCC 17616] gi|189335581|dbj|BAG44651.1| signal recognition particle receptor [Burkholderia multivorans ATCC 17616] Length = 380 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 131/307 (42%), Positives = 186/307 (60%), Gaps = 7/307 (2%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 AS SW+ +L G A T IT + + ++DD + EELE L+ SD GV + + Sbjct: 80 ASAKKSWLARLKTGLAKTG----SSITGVFVNTKIDDALYEELETALLMSDAGVDATEYL 135 Query: 67 VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 + L K R + Q+V + +L+ ++L PL K + P V+++ GVNG GKT Sbjct: 136 LGALREKVRVGRLTDPQQVKSALRDLLVELLTPLEKSLVLGRAQ-PLVMMIAGVNGAGKT 194 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K + V+LAAGDTFR+AA +QL +W +R + V E G D AA+ ++A Sbjct: 195 TSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLTVWGERNNVTVVQQESG-DPAAVIFDA 253 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+A+K+DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNA Sbjct: 254 VSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNA 313 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QV+ F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF A++ Sbjct: 314 LTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAEE 373 Query: 306 FSAVITG 312 F+ + G Sbjct: 374 FADALLG 380 >gi|167844229|ref|ZP_02469737.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei B7210] Length = 345 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 130/302 (43%), Positives = 186/302 (61%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + +++ L Sbjct: 50 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDALR 105 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ ++L PL K + +P V+++ GVNG GKTT IGK Sbjct: 106 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 164 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 165 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 223 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 224 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 283 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ + Sbjct: 284 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 343 Query: 311 TG 312 G Sbjct: 344 LG 345 >gi|91781706|ref|YP_556912.1| signal recognition particle-docking protein FtsY [Burkholderia xenovorans LB400] gi|91685660|gb|ABE28860.1| signal recognition particle-docking protein FtsY [Burkholderia xenovorans LB400] Length = 385 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 133/303 (43%), Positives = 182/303 (60%), Gaps = 7/303 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW+ +L G + TS L T I ++D+ + EELE L+ SD GV + ++E L Sbjct: 89 SWLTRLKTGLSKTSSSL----TGIFVGTKIDEDLYEELETALLMSDAGVDATEYLLEALR 144 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ +L PL K + P V+++ GVNG GKTT IGK Sbjct: 145 EKVRTERLTDPQQVKAALRTLLVDLLKPLEKSLMLGRAQ-PLVMMIAGVNGAGKTTSIGK 203 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW R + V E G D AA+ ++A A+ Sbjct: 204 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGQRNNVTVVSQESG-DPAAVIFDAVGAAR 262 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+K+DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 263 ARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQEGAPHEVLLVIDANTGQNALAQVK 322 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+GVGE + DL+PF A++FS + Sbjct: 323 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSDAL 382 Query: 311 TGC 313 G Sbjct: 383 LGS 385 >gi|295675394|ref|YP_003603918.1| signal recognition particle-docking protein FtsY [Burkholderia sp. CCGE1002] gi|295435237|gb|ADG14407.1| signal recognition particle-docking protein FtsY [Burkholderia sp. CCGE1002] Length = 384 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 132/302 (43%), Positives = 183/302 (60%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW+ +L G A TS L T I ++D+ + EELE L+ SD GV + ++E L Sbjct: 88 SWLTRLKSGLAKTSSNL----TGIFVGTKIDEDLYEELETALLMSDAGVEATEFLLESLR 143 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ ++L PL K + P V+++ GVNG GKTT IGK Sbjct: 144 EKVRSERLTDPQQVKTALRTLLVELLKPLEKSLMLGRAQ-PLVMMIAGVNGAGKTTSIGK 202 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL +W R + V E G D AA+ ++A A+ Sbjct: 203 LAKHLQSFHQSVLLAAGDTFRAAAREQLAVWGQRNNVTVVAQESG-DPAAVIFDAVGAAR 261 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 262 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTGQNALTQVK 321 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+GVGE ++DL+PF A++FS + Sbjct: 322 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVDDLQPFSAEEFSDAL 381 Query: 311 TG 312 G Sbjct: 382 LG 383 >gi|170691511|ref|ZP_02882676.1| signal recognition particle-docking protein FtsY [Burkholderia graminis C4D1M] gi|170143716|gb|EDT11879.1| signal recognition particle-docking protein FtsY [Burkholderia graminis C4D1M] Length = 395 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 133/302 (44%), Positives = 183/302 (60%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW+ +L G + TS IT I ++D+ + EELE L+ SD GV + ++E L Sbjct: 99 SWLTRLKTGLSKTS----SSITGIFVGAKIDEDLYEELETALLMSDAGVDATEFLLEALR 154 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ +L PL K + +P V+++ GVNG GKTT IGK Sbjct: 155 EKVRAERLTEPQQVKAALRTLLVDLLKPLEKSLMLGRA-KPLVMMIAGVNGAGKTTSIGK 213 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW R + V E G D AA+ ++A A+ Sbjct: 214 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGQRNNVTVVAQESG-DPAAVIFDAVGAAR 272 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+K+DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 273 ARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTGQNALAQVK 332 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+GVGE + DL+PF A++FS + Sbjct: 333 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSDAL 392 Query: 311 TG 312 G Sbjct: 393 LG 394 >gi|221211185|ref|ZP_03584164.1| signal recognition particle-docking protein FtsY [Burkholderia multivorans CGD1] gi|221168546|gb|EEE01014.1| signal recognition particle-docking protein FtsY [Burkholderia multivorans CGD1] Length = 380 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 131/307 (42%), Positives = 186/307 (60%), Gaps = 7/307 (2%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 AS SW+ +L G A T IT + + ++DD + EELE L+ SD GV + + Sbjct: 80 ASAKKSWLARLKTGLAKTG----SSITGVFVNTKIDDALYEELETALLMSDAGVDATEYL 135 Query: 67 VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 + L K R + Q+V + +L+ ++L PL K + P V+++ GVNG GKT Sbjct: 136 LGALREKVRVGRLTDPQQVKSALRDLLVELLTPLEKSLVLGRAQ-PLVMMIAGVNGAGKT 194 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K + V+LAAGDTFR+AA +QL +W +R + V E G D AA+ ++A Sbjct: 195 TSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLTVWGERNNVTVVQQESG-DPAAVIFDA 253 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+A+K+DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNA Sbjct: 254 VSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNA 313 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QV+ F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF A++ Sbjct: 314 LTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAEE 373 Query: 306 FSAVITG 312 F+ + G Sbjct: 374 FADALLG 380 >gi|167579753|ref|ZP_02372627.1| signal recognition particle-docking protein FtsY [Burkholderia thailandensis TXDOH] Length = 425 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 132/302 (43%), Positives = 184/302 (60%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SWI +L G A TS IT++ + ++DD + EELE L+ SD GV + ++ L Sbjct: 130 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGVDATEHLLGALR 185 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ ++L PL K + P V+++ GVNG GKTT IGK Sbjct: 186 EKVRTGRLTDPQQVKDALRGLLVELLTPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSIGK 244 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 245 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 303 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 304 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 363 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+GVGE + DL+PF A++F+ + Sbjct: 364 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFADAL 423 Query: 311 TG 312 G Sbjct: 424 LG 425 >gi|254515831|ref|ZP_05127891.1| signal recognition particle-docking protein FtsY [gamma proteobacterium NOR5-3] gi|219675553|gb|EED31919.1| signal recognition particle-docking protein FtsY [gamma proteobacterium NOR5-3] Length = 352 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 130/309 (42%), Positives = 192/309 (62%), Gaps = 5/309 (1%) Query: 2 SNQKVASESLS--WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDI 58 SNQ E+ + +L +G TS L G+ ++ R+ +D + EELE L+ +D+ Sbjct: 37 SNQDSDPEAAGPGFFGRLKRGLGRTSDSLAAGVGNLFLGRKTIDADLLEELETQLLMADV 96 Query: 59 GVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117 G+ +I+ L + K++S + ++ + + + +L P K + + P VIL+V Sbjct: 97 GIEATSEIIAHLTDRVSRKELSDPEALMQGLRDELQGILQPCEKSLDVS-AGSPFVILMV 155 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 GVNGVGKTT IGKL+++ D G VMLAAGDTFR+AA++QL+ W +R + G+D Sbjct: 156 GVNGVGKTTTIGKLARRFQDEGRSVMLAAGDTFRAAAVEQLQHWGERHDVPVIAQHTGAD 215 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 +A++ Y+A + A A+ VDVLI DTAGRL N S LM + K++RV+++L+P AP V+ VL Sbjct: 216 SASVIYDALQAATARGVDVLIADTAGRLSNKSHLMEELSKVVRVMRKLNPDAPQEVMLVL 275 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA TGQNAL Q F G TGL +TK+DGTA+GG + I +P+ F+GVGE D Sbjct: 276 DAGTGQNALSQASQFLEAVGVTGLTLTKLDGTAKGGVIFAIARRLGLPIRFIGVGESALD 335 Query: 298 LEPFVAKDF 306 L PFVA++F Sbjct: 336 LRPFVAEEF 344 >gi|282910807|ref|ZP_06318610.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus subsp. aureus WBG10049] gi|282325412|gb|EFB55721.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus subsp. aureus WBG10049] Length = 416 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 126/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71 K G + +E + ++I+ R++D+ E LE++LI +D+G + EEL Sbjct: 87 KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146 Query: 72 TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 +R +D R ++ + E+ H+ S+ N + R +VIL+VGVNGVGKTT IG Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 204 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KVMLAAGDTFR+ AIDQLK+W +R D + GSD AA+ Y+A A Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K VD+LI DTAGRL N + LM + K+ RV+ R P APH L LD+TTGQNAL Q Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDSTTGQNALSQA 324 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F V TG+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 325 RNFKGVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381 >gi|282916485|ref|ZP_06324247.1| signal recognition particle receptor [Staphylococcus aureus subsp. aureus D139] gi|282319925|gb|EFB50273.1| signal recognition particle receptor [Staphylococcus aureus subsp. aureus D139] Length = 416 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 127/299 (42%), Positives = 184/299 (61%), Gaps = 12/299 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K G + +E + ++I+ R++D+ E LE++LI +D+G + EEL + Sbjct: 87 KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEEL--RM 144 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTV 127 A+ ++Q D+ E+I + ++ + S+ N + R +VIL+VGVNGVGKTT Sbjct: 145 EAQRHNIQDT-EDLREVIVEKIVEIYHQEDDNSEAMNLE-DGRLNVILMVGVNGVGKTTT 202 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ + G KVMLAAGDTFR+ AIDQLK+W +R D + GSD AA+ Y+A Sbjct: 203 IGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAIN 262 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ K VD+LI DTAGRL N + LM + K+ RV+ R P APH L LDATTGQNAL Sbjct: 263 AAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALS 322 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q F V TG+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 323 QARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381 >gi|254796903|ref|YP_003081740.1| signal recognition particle-docking protein FtsY [Neorickettsia risticii str. Illinois] gi|254590139|gb|ACT69501.1| signal recognition particle-docking protein FtsY [Neorickettsia risticii str. Illinois] Length = 309 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 123/280 (43%), Positives = 177/280 (63%), Gaps = 2/280 (0%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87 L GI +I + ++ + E+LE+LL+ +DIG V ++IV+ + + S+++V Sbjct: 20 LSSGIDNIFAKEKISESTIEQLEELLLSADIGPTVTERIVKAVKKIKVKDGESLEQVKSI 79 Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 E I K+L P SK + + P VI+ GVNG GKTT IGKL+ K VM+AA Sbjct: 80 TREQIRKVLDPTSKKLIFPQTG-PQVIVFCGVNGNGKTTTIGKLAYKFIQENKTVMIAAC 138 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 D FR+AAI+QL+ WA+R SA F SE +A+ AY+A ++A KVD LIIDT+GRLH Sbjct: 139 DLFRAAAIEQLRFWAERVSATFFSSETSKNASGTAYKALEKALEDKVDALIIDTSGRLHT 198 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + LM + K+ RVL +L P APH V+ LDA+TGQNAL QV++F TGL++TK+D Sbjct: 199 QNDLMEELKKICRVLSKLMPSAPHEVILALDASTGQNALNQVQVFKDAVNLTGLVVTKLD 258 Query: 268 GTARGGGLIPIVVTH-KIPVYFLGVGEGINDLEPFVAKDF 306 GT++GG ++ I + + +YF+G GE I DLE F + +F Sbjct: 259 GTSKGGVIVAIAERYPNLGIYFVGTGEKITDLEEFSSSEF 298 >gi|221199977|ref|ZP_03573020.1| signal recognition particle-docking protein FtsY [Burkholderia multivorans CGD2M] gi|221206868|ref|ZP_03579880.1| signal recognition particle-docking protein FtsY [Burkholderia multivorans CGD2] gi|221173523|gb|EEE05958.1| signal recognition particle-docking protein FtsY [Burkholderia multivorans CGD2] gi|221180216|gb|EEE12620.1| signal recognition particle-docking protein FtsY [Burkholderia multivorans CGD2M] Length = 382 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 131/307 (42%), Positives = 186/307 (60%), Gaps = 7/307 (2%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 AS SW+ +L G A T IT + + ++DD + EELE L+ SD GV + + Sbjct: 82 ASAKKSWLARLKTGLAKTG----SSITGVFVNTKIDDALYEELETALLMSDAGVDATEYL 137 Query: 67 VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 + L K R + Q+V + +L+ ++L PL K + P V+++ GVNG GKT Sbjct: 138 LGALREKVRVGRLTDPQQVKSALRDLLVELLTPLEKSLVLGRAQ-PLVMMIAGVNGAGKT 196 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K + V+LAAGDTFR+AA +QL +W +R + V E G D AA+ ++A Sbjct: 197 TSIGKLAKHLQSFEQSVLLAAGDTFRAAAREQLTVWGERNNVTVVQQESG-DPAAVIFDA 255 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+A+K+DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNA Sbjct: 256 VSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNA 315 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QV+ F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF A++ Sbjct: 316 LTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAEE 375 Query: 306 FSAVITG 312 F+ + G Sbjct: 376 FADALLG 382 >gi|209519635|ref|ZP_03268425.1| signal recognition particle-docking protein FtsY [Burkholderia sp. H160] gi|209499921|gb|EDZ99986.1| signal recognition particle-docking protein FtsY [Burkholderia sp. H160] Length = 375 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 132/302 (43%), Positives = 183/302 (60%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW+ +L G + TS L T I ++D+ + EELE L+ SD GV + ++E L Sbjct: 79 SWLTRLKSGLSKTSSSL----TGIFVGTKIDEDLYEELETALLMSDAGVEATEFLLESLR 134 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ ++L PL K + P V+++ GVNG GKTT IGK Sbjct: 135 EKVRSDRLTDPQQVKTALRTLLVELLKPLEKSLMLGRAQ-PLVMMIAGVNGAGKTTSIGK 193 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL +W R + V E G D AA+ ++A A+ Sbjct: 194 LAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGQRNNVTVVAQESG-DPAAVIFDAVGAAR 252 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+K+DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 253 ARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTGQNALTQVK 312 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+GVGE + DL+PF A++FS + Sbjct: 313 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSDAL 372 Query: 311 TG 312 G Sbjct: 373 LG 374 >gi|242318106|ref|ZP_04817122.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 1106b] gi|242141345|gb|EES27747.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 1106b] Length = 384 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 130/302 (43%), Positives = 186/302 (61%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + +++ L Sbjct: 89 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDALR 144 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ ++L PL K + +P V+++ GVNG GKTT IGK Sbjct: 145 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 203 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 204 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 262 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 263 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 322 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ + Sbjct: 323 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 382 Query: 311 TG 312 G Sbjct: 383 LG 384 >gi|227510450|ref|ZP_03940499.1| signal recognition particle-docking protein FtsY [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190102|gb|EEI70169.1| signal recognition particle-docking protein FtsY [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 483 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 130/316 (41%), Positives = 189/316 (59%), Gaps = 20/316 (6%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61 + + ASES + KG A + + + ++++ R +D+ ++LED+LI SD+G Sbjct: 165 DSEAASES-GATQSYEKGLAKSRSSFGQKLNALLANFRHVDESFFDDLEDMLIESDVGFE 223 Query: 62 VAQKIV----EELLTKRYAKDVSVQRV-------LYDVSELIHKMLMPLSKPFNWDFSHR 110 + KI EE+ + K VQ V +YD + + L+K Sbjct: 224 TSMKIADDLREEVKLQNAKKPKDVQNVIVKKLIDMYDQAGNGENPAINLAK-------SG 276 Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VIL+VGVNGVGKTT IGK++K D G KV+LAA DTFR+ AI+QL +WA R D V Sbjct: 277 PTVILMVGVNGVGKTTTIGKMAKMYKDQGKKVVLAAADTFRAGAIEQLNVWAQRDGVDIV 336 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 S+ SD +++ ++A K+A+ + D+L++DTAGRL N LM + KM ++L R P AP Sbjct: 337 KSKPKSDPSSVVFDAVKKARDEHYDILMVDTAGRLQNKVNLMNELSKMKKILTREIPEAP 396 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 H VL VLDATTGQNA+ Q +MF TG+++TK+DGTARGG ++ I +PV ++G Sbjct: 397 HEVLLVLDATTGQNAMTQAKMFKEATDVTGIVLTKLDGTARGGIVLAIRSELHLPVKYVG 456 Query: 291 VGEGINDLEPFVAKDF 306 +GE + DL+PF DF Sbjct: 457 LGEKVTDLKPFDPNDF 472 >gi|302039359|ref|YP_003799681.1| cell division protein ftsY-like protein [Candidatus Nitrospira defluvii] gi|300607423|emb|CBK43756.1| Cell division protein ftsY homolog [Candidatus Nitrospira defluvii] Length = 304 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 127/300 (42%), Positives = 182/300 (60%), Gaps = 5/300 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + W++KL+ G + T + G D + R D + +ELE LI +D+G+ V ++++ +L Sbjct: 1 MGWLQKLSAGLSKTRDAVT-GQLDRLLGRAADPALLDELEVALISADLGMPVVERVMGQL 59 Query: 71 LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTT 126 + + S + D+ + + +L+P RP VIL VGVNGVGKTT Sbjct: 60 RAQMRGGNFSSADKVRDLLRQSVLDILLPTQSASMEQLVAQGPRPFVILAVGVNGVGKTT 119 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 + KL+++ G K +L AGDTFR+AAIDQL++WADR D + G+D AA+AY+ Sbjct: 120 TVAKLTQRFRQQGKKPLLVAGDTFRAAAIDQLQVWADRIEVDVIRHRPGADPAAVAYDGM 179 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A+A+ DV++IDTAGRLH + LM + K+ RV+ + APH VL VLDAT GQNA+ Sbjct: 180 TAAKARGSDVVLIDTAGRLHTKTNLMDELRKIKRVVAQECQGAPHEVLLVLDATVGQNAI 239 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q FH G TG+ +TK+DGTARGG ++ I T KIPV +GVGE + DL+ F AK F Sbjct: 240 AQARQFHEAVGVTGIALTKLDGTARGGIVVAIADTFKIPVRLIGVGEDVEDLQDFDAKAF 299 >gi|126654293|ref|ZP_01726070.1| recognition particle-docking protein [Bacillus sp. B14905] gi|126589257|gb|EAZ83418.1| recognition particle-docking protein [Bacillus sp. B14905] Length = 424 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 125/304 (41%), Positives = 187/304 (61%), Gaps = 13/304 (4%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 S +K G T + D+++ R++D+ EELEDLL+++D+G +++++L Sbjct: 107 SITQKFKAGLEKTRNSFTSKVNDLVARYRKVDEDFFEELEDLLLQADVGFETVMELMDKL 166 Query: 71 ---LTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + ++ KD + + L ++ E L+ L+ + + + VIL VGVNGV Sbjct: 167 RFEVQRKNIKDTNGIQTLISEKLVEIYEQGEDDLIELNMQPDGELT----VILFVGVNGV 222 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL++++ G V+LAAGDTFR+ AIDQL++W DR + + GSD AA+ Sbjct: 223 GKTTTIGKLARRLKSQGKTVVLAAGDTFRAGAIDQLQVWGDRVGCEVIKQSEGSDPAAVM 282 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+ +K DVLI DTAGRL N LM + K+ RV+ R P APH VL LDATTG Sbjct: 283 YDAIRAAKNRKADVLICDTAGRLQNKVNLMNELEKVHRVISREIPSAPHEVLLALDATTG 342 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL Q + F TG+++TK+DGTA+GG ++ I IPV F+G+GE ++DL+PF Sbjct: 343 QNALVQAQTFKEATNVTGIVLTKLDGTAKGGIVLAIRNKLHIPVKFVGLGEKMDDLQPFD 402 Query: 303 AKDF 306 A+ + Sbjct: 403 AERY 406 >gi|78222392|ref|YP_384139.1| signal recognition particle-docking protein FtsY [Geobacter metallireducens GS-15] gi|78193647|gb|ABB31414.1| signal recognition particle-docking protein FtsY [Geobacter metallireducens GS-15] Length = 351 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 127/276 (46%), Positives = 177/276 (64%), Gaps = 8/276 (2%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQ---KIVEELLTKRYAKD-VSVQRVLYDVSE 90 ++ + +D EELE++LI +DIGV +I+EE L++ D ++++ L D Sbjct: 74 VLGKKEIDADTLEELEEILITADIGVQTTVELIRILEERLSRNELNDGAALRQTLKDE-- 131 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 I K L +P D S P VI+V+GVNGVGKTT IGKL+ + S G KV+LAAGDTF Sbjct: 132 -ILKRLSRDVRPLAVD-SASPFVIMVIGVNGVGKTTTIGKLAARFSREGKKVVLAAGDTF 189 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R+AA +QL+IW +RT D V + G+D +A+ ++ K A A+K DVLI+DTAGRLH Sbjct: 190 RAAAAEQLEIWGERTGCDVVRHKEGADPSAVVFDGIKAAVARKADVLIVDTAGRLHTKVN 249 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + K+ R++ R P APH L VLDA TGQNAL Q ++F A TG+ +TK+DGTA Sbjct: 250 LMEELKKVRRIMDREIPGAPHETLLVLDAATGQNALSQAKLFKEAAEVTGIALTKLDGTA 309 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +GG + I +IPV ++GVGEG++DL F +F Sbjct: 310 KGGIVAAICNEFRIPVRYIGVGEGVDDLRDFDPAEF 345 >gi|296161521|ref|ZP_06844326.1| signal recognition particle-docking protein FtsY [Burkholderia sp. Ch1-1] gi|295888165|gb|EFG67978.1| signal recognition particle-docking protein FtsY [Burkholderia sp. Ch1-1] Length = 385 Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 133/302 (44%), Positives = 182/302 (60%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW+ +L G + TS L T I ++D+ + EELE L+ SD GV + ++E L Sbjct: 89 SWLTRLKTGLSKTSSSL----TGIFVGAKIDEDLYEELETALLMSDAGVDATEYLLEALR 144 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ +L PL K + P V+++ GVNG GKTT IGK Sbjct: 145 EKVRAERLTDPQQVKAALRTLLVDLLRPLEKSLMLGRAQ-PLVMMIAGVNGAGKTTSIGK 203 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW R + V E G D AA+ ++A A+ Sbjct: 204 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGQRNNVTVVSQESG-DPAAVIFDAVGAAR 262 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+K+DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 263 ARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQEGAPHEVLLVIDANTGQNALAQVK 322 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+GVGE + DL+PF A++FS + Sbjct: 323 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSDAL 382 Query: 311 TG 312 G Sbjct: 383 LG 384 >gi|225180936|ref|ZP_03734384.1| signal recognition particle-docking protein FtsY [Dethiobacter alkaliphilus AHT 1] gi|225168417|gb|EEG77220.1| signal recognition particle-docking protein FtsY [Dethiobacter alkaliphilus AHT 1] Length = 310 Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 126/287 (43%), Positives = 182/287 (63%), Gaps = 2/287 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74 ++ +G T + + + + DD EELE++LI +D+GV +I + L K R Sbjct: 6 RIKEGLKKTRSGIMGRMEGLFARSSFDDEFYEELEEVLIGADVGVETTMQITDSLREKVR 65 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K Q+V+ + L+ +L P +P VILV+GVNGVGKTT IGKL+ + Sbjct: 66 EEKAREPQQVMDILKGLLLDILGRDVVPLELS-EQKPTVILVLGVNGVGKTTTIGKLAHR 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 + G KV+LAAGDTFR+AAI+QL+IWA R +D + + GSD +A+ ++ A ++ Sbjct: 125 YKNEGKKVLLAAGDTFRAAAIEQLEIWAGRAQSDIIKHQQGSDPSAVLFDGVTAAVSRGS 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 DV++ DTAGRLHN + LM + K+ RV+++ P APH VL VLDATTGQNAL Q ++F+ Sbjct: 185 DVVLCDTAGRLHNKANLMEELKKVRRVVEKALPGAPHEVLLVLDATTGQNALAQAKVFNE 244 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 A TG+ +TK+DGTA+GG +I I K+PV +GVGEG+ DL+PF Sbjct: 245 AAPITGVALTKLDGTAKGGIVIAIANELKVPVKMVGVGEGVEDLQPF 291 >gi|56964061|ref|YP_175792.1| signal recognition particle GTPase [Bacillus clausii KSM-K16] gi|56910304|dbj|BAD64831.1| signal recognition particle GTPase [Bacillus clausii KSM-K16] Length = 327 Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 132/308 (42%), Positives = 188/308 (61%), Gaps = 8/308 (2%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K+A ++ K G T I ++++ R++D+ E+LE++LI +D+GV+ Sbjct: 9 EKMAQQTNEVADKFKHGLEKTRTSFSGKINELVARYRKIDEDFFEDLEEILIGADVGVST 68 Query: 63 AQKIVEELLTK---RYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118 ++V+EL + R KD +Q V +SE + +L K VILVVG Sbjct: 69 VMELVDELKEEVRLRNLKDTEEIQPV---ISEKLASLLEKDDKDTTLQLQEGLSVILVVG 125 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNGVGKTT IGKL+ + G V+LAAGDTFR+ AIDQL +W +R + + GSD Sbjct: 126 VNGVGKTTSIGKLAHYLKGQGKSVVLAAGDTFRAGAIDQLDVWGERVGVPVIKQQEGSDP 185 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ Y+A A+++K DVLI DTAGRL N LM + K+ RV++R P APH VL V+D Sbjct: 186 AAVMYDAIAWARSRKADVLICDTAGRLQNKVNLMNELAKVKRVIEREVPGAPHEVLLVVD 245 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 ATTGQNAL Q + F A +GL++TK+DGTA+GG +I I +PV F+G+GE +DL Sbjct: 246 ATTGQNALSQAKAFAASTDVSGLVLTKLDGTAKGGIVIAIRQELDLPVKFIGLGEQKDDL 305 Query: 299 EPFVAKDF 306 +PF A+ F Sbjct: 306 QPFDAEQF 313 >gi|307824536|ref|ZP_07654761.1| signal recognition particle-docking protein FtsY [Methylobacter tundripaludum SV96] gi|307734520|gb|EFO05372.1| signal recognition particle-docking protein FtsY [Methylobacter tundripaludum SV96] Length = 664 Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 124/279 (44%), Positives = 175/279 (62%), Gaps = 15/279 (5%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK- 94 + + +D+ + EE+E L+ +DIGV +I++ L SV+R + E + Sbjct: 385 LGRQEIDEDLLEEIEASLLMADIGVDATTEIIKRLTE-------SVERHQLNDGEALSAA 437 Query: 95 -------MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 ML P SK + +P VILVVGVNG GKTT IGKL+K++ G VMLAAG Sbjct: 438 LKQELLIMLQPCSKNLHIPKQDKPFVILVVGVNGAGKTTTIGKLAKRLQAQGHSVMLAAG 497 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DTFR+AA++QL+ W +R + V G+D+A++ Y+ + AQAK +DVLI DTAGRLH Sbjct: 498 DTFRAAAVEQLQTWGERNNIHVVAQHTGADSASVIYDGVQSAQAKGIDVLIADTAGRLHT 557 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 S LM + K+ R++ +LD APH VL VLDA TGQNAL Q ++F+ TGL++TK+D Sbjct: 558 KSNLMDELKKVKRIMSKLDETAPHEVLLVLDAGTGQNALSQTKLFNETVELTGLVLTKLD 617 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 GTA+GG + + IP+ F+G+GEGI+DL+ F A F Sbjct: 618 GTAKGGIIFALAKQFGIPIRFIGIGEGIDDLQDFDADAF 656 >gi|260911739|ref|ZP_05918315.1| signal recognition particle-docking protein FtsY [Prevotella sp. oral taxon 472 str. F0295] gi|260634164|gb|EEX52278.1| signal recognition particle-docking protein FtsY [Prevotella sp. oral taxon 472 str. F0295] Length = 317 Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 130/297 (43%), Positives = 183/297 (61%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG T + +T ++ + ++DD V ++LE++LI SD+GV KI+E + R Sbjct: 15 LDKGLEKTKQSVFSKLTRAVAGKSKVDDEVLDDLEEILITSDVGVDTTLKIIERI-EARV 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMP--LSKPFNWDFSH--RPHVILVVGVNGVGKTTVIG 129 A+D VS + + E I +L NWD P+VILVVGVNGVGKTT IG Sbjct: 74 ARDKYVSTNELNNILKEEITALLSENNTQDNDNWDLPQTGNPYVILVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG KV L A DTFR+AA++Q+ IW +R V ++GSD A++A++ A Sbjct: 134 KLAHQFKQAGKKVYLGAADTFRAAAVEQICIWGERVGVPVVKQQMGSDPASVAFDTLSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A DV+IIDTAGRLHN LM + K+ V+K++ P AP+ VL VLD +TGQNA Q Sbjct: 194 KANGADVVIIDTAGRLHNKVGLMNELKKIKEVMKKVLPEAPNEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F AV T L +TK+DGTA+GG +I I K+PV ++G+GEG+ DL+ F + F Sbjct: 254 KQFSAVTNITALAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQLFNRQHF 310 >gi|121999083|ref|YP_001003870.1| signal recognition particle-docking protein FtsY [Halorhodospira halophila SL1] gi|121590488|gb|ABM63068.1| signal recognition particle-docking protein FtsY [Halorhodospira halophila SL1] Length = 315 Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 117/258 (45%), Positives = 161/258 (62%), Gaps = 1/258 (0%) Query: 55 RSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113 ++D+G+ QK+++ L+ + + + + VL + I K+L P+ KP D RP V Sbjct: 56 QADVGMEATQKVLDGLVERLGGSGGGTGETVLEALRSEIVKVLEPVEKPLQIDTDKRPFV 115 Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 IL VGVNG GKTT IGKL+ + + G VM+AAGDTFR+AA+DQL+ W +R + Sbjct: 116 ILTVGVNGAGKTTTIGKLAARFQNEGRSVMVAAGDTFRAAAVDQLQQWGERVGCPVIAQP 175 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 GSD A++ ++A + A+A+ DVLI DTAGRLH LM + K+ RVL R D APH Sbjct: 176 TGSDPASVVFDAHQAARARGADVLIADTAGRLHTQDNLMEELRKIRRVLGRQDADAPHET 235 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L VLD GQNAL Q E F A TGL +TK+DGTARGG L+ + ++PV ++GVGE Sbjct: 236 LLVLDGGNGQNALAQAEQFGAAVNVTGLAVTKLDGTARGGVLLALAERLQVPVRYIGVGE 295 Query: 294 GINDLEPFVAKDFSAVIT 311 + DL F A DF+ +T Sbjct: 296 KVEDLRTFRAADFAEALT 313 >gi|227524602|ref|ZP_03954651.1| signal recognition particle-docking protein FtsY [Lactobacillus hilgardii ATCC 8290] gi|227088277|gb|EEI23589.1| signal recognition particle-docking protein FtsY [Lactobacillus hilgardii ATCC 8290] Length = 481 Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 130/316 (41%), Positives = 189/316 (59%), Gaps = 20/316 (6%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61 + + ASES + KG A + + + ++++ R +D+ ++LED+LI SD+G Sbjct: 163 DSETASES-GATQSYEKGLAKSRSSFGQKLNALLANFRHVDESFFDDLEDMLIESDVGFE 221 Query: 62 VAQKIV----EELLTKRYAKDVSVQRV-------LYDVSELIHKMLMPLSKPFNWDFSHR 110 + KI EE+ + K VQ V +YD + + L+K Sbjct: 222 TSMKIADDLREEVKLQNAKKPKDVQNVIVKKLIDMYDQAGNGENPAINLAK-------SG 274 Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VIL+VGVNGVGKTT IGK++K D G KV+LAA DTFR+ AI+QL +WA R D V Sbjct: 275 PTVILMVGVNGVGKTTTIGKMAKMYKDQGKKVVLAAADTFRAGAIEQLNVWAQRDGVDIV 334 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 S+ SD +++ ++A K+A+ + D+L++DTAGRL N LM + KM ++L R P AP Sbjct: 335 KSKPKSDPSSVVFDAVKKARDEHYDILMVDTAGRLQNKVNLMNELSKMKKILTREIPEAP 394 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 H VL VLDATTGQNA+ Q +MF TG+++TK+DGTARGG ++ I +PV ++G Sbjct: 395 HEVLLVLDATTGQNAMTQAKMFKETTDVTGIVLTKLDGTARGGIVLAIRSELHLPVKYVG 454 Query: 291 VGEGINDLEPFVAKDF 306 +GE + DL+PF DF Sbjct: 455 LGEKVTDLKPFDPNDF 470 >gi|77461558|ref|YP_351065.1| signal recognition particle-docking protein FtsY [Pseudomonas fluorescens Pf0-1] gi|77385561|gb|ABA77074.1| cell division protein [Pseudomonas fluorescens Pf0-1] Length = 515 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 125/296 (42%), Positives = 189/296 (63%), Gaps = 2/296 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L +G + TS + EG+ + + + +DD + ++LE L+ +D+GV I++ L Sbjct: 209 FFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLDDLETRLLTADVGVEATSVIIQRLT 268 Query: 72 TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K K+++ LY + + ML P+ +P ++P VILVVGVNG GKTT IGK Sbjct: 269 QKVARKELADSDALYKSLQAELAAMLKPVEQPLKIASRNKPFVILVVGVNGAGKTTTIGK 328 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + A+ Sbjct: 329 LAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVIFDAVQAAK 388 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q + Sbjct: 389 ARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQAK 448 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A+ F Sbjct: 449 QFNQTVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 504 >gi|313206703|ref|YP_004045880.1| signal recognition particle-docking protein ftsy [Riemerella anatipestifer DSM 15868] gi|312446019|gb|ADQ82374.1| signal recognition particle-docking protein FtsY [Riemerella anatipestifer DSM 15868] gi|315023770|gb|EFT36772.1| Signal recognition particle receptor protein FtsY (alpha subunit) [Riemerella anatipestifer RA-YM] gi|325335858|gb|ADZ12132.1| FtsY [Riemerella anatipestifer RA-GD] Length = 318 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 127/295 (43%), Positives = 185/295 (62%), Gaps = 6/295 (2%) Query: 17 LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L +G +S E I+ +I ++DD V ++LE++LI SD+G KI+E + R Sbjct: 16 LDRGLEKSSQGFFEKISKAVIGKSKVDDEVLDDLEEVLIASDVGAQTTIKIIERI-EDRV 74 Query: 76 AKD--VSVQRVLYDVSELIHKMLM--PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 A+D V V + + E I +L+ P + N D + +P+VI+VVGVNGVGKTT IGKL Sbjct: 75 ARDKYVGVDELHKLLKEEITALLLENPHADTGNIDEAKKPYVIMVVGVNGVGKTTTIGKL 134 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + G KV+L A DTFR+AA+DQL IW++R V +GSD A++A++ + A A Sbjct: 135 AHQFKTQGKKVVLGAADTFRAAAVDQLVIWSERVGVPIVKQNMGSDPASVAFDTVQSAVA 194 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + DV++IDTAGRLHN LM + K+ RV++++ P APH VL VLD +TGQNA Q + Sbjct: 195 QNADVVLIDTAGRLHNKVNLMNELSKIKRVMQKVIPDAPHEVLLVLDGSTGQNAFEQAKQ 254 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F A L +TK+DGTA+GG +I I ++PV ++GVGE + DL+ F +F Sbjct: 255 FTAATEVNALAVTKLDGTAKGGVVIGISDQFQVPVKYIGVGEKMEDLQLFNGTEF 309 >gi|167917481|ref|ZP_02504572.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei BCC215] gi|254187806|ref|ZP_04894318.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei Pasteur 52237] gi|254197031|ref|ZP_04903455.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei S13] gi|254261869|ref|ZP_04952923.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 1710a] gi|157935486|gb|EDO91156.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei Pasteur 52237] gi|169653774|gb|EDS86467.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei S13] gi|254220558|gb|EET09942.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 1710a] Length = 439 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 130/302 (43%), Positives = 186/302 (61%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + +++ L Sbjct: 144 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDALR 199 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ ++L PL K + +P V+++ GVNG GKTT IGK Sbjct: 200 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 258 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 259 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 317 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 318 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 377 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ + Sbjct: 378 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 437 Query: 311 TG 312 G Sbjct: 438 LG 439 >gi|253999629|ref|YP_003051692.1| signal recognition particle-docking protein FtsY [Methylovorus sp. SIP3-4] gi|253986308|gb|ACT51165.1| signal recognition particle-docking protein FtsY [Methylovorus sp. SIP3-4] Length = 341 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 125/301 (41%), Positives = 186/301 (61%), Gaps = 3/301 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 A LSW +L G A T +L + + ++D+ V EELE +L+ SD+GVA Q + Sbjct: 37 AENKLSWTERLKNGLAKTRSQLGNQLASLFGGGKIDEDVYEELETILLTSDVGVAATQAL 96 Query: 67 VEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 +E++ + + +S ++ + + + ++L PL KP +H+P VI++ GVNG GKT Sbjct: 97 LEQIRQRVKRQSLSDTTQLKQALKDALLELLAPLEKPL-VTTTHQPFVIMLAGVNGAGKT 155 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+ G V++AAGDTFR+AA +QL+ W DR + V E G D AA+ ++A Sbjct: 156 TSIGKLANLFQAQGKSVLIAAGDTFRAAAREQLQAWGDRNNVHVVAQESG-DPAAVIFDA 214 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+A+ +D+++ DTAGRL LM I K+ RV+ + P APH +L VLDA TGQNA Sbjct: 215 VNSAKARNIDIVLADTAGRLPTQLNLMEEIRKVQRVIGKALPGAPHEILLVLDANTGQNA 274 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + QV+ F G TGL+++K+DGTA+GG + I IP+ ++GVGE I DL PF A++ Sbjct: 275 ISQVKAFDDALGVTGLVLSKLDGTAKGGVIAAIAQARPIPIRYIGVGESIADLRPFKAEE 334 Query: 306 F 306 F Sbjct: 335 F 335 >gi|217419579|ref|ZP_03451085.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 576] gi|217396883|gb|EEC36899.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 576] Length = 439 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 130/302 (43%), Positives = 186/302 (61%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + +++ L Sbjct: 144 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDALR 199 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ ++L PL K + +P V+++ GVNG GKTT IGK Sbjct: 200 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 258 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 259 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 317 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 318 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 377 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ + Sbjct: 378 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 437 Query: 311 TG 312 G Sbjct: 438 LG 439 >gi|289550985|ref|YP_003471889.1| Signal recognition particle receptor protein FtsY, alpha subunit [Staphylococcus lugdunensis HKU09-01] gi|289180517|gb|ADC87762.1| Signal recognition particle receptor protein FtsY, alpha subunit [Staphylococcus lugdunensis HKU09-01] Length = 353 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 183/297 (61%), Gaps = 8/297 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT-- 72 K G + +E + ++I+ R++D+ E LE++LI +D+G ++ +EL T Sbjct: 28 KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMQLTDELRTEA 87 Query: 73 -KRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 +R +D + R ++ + E+ H+ S+ N + R +VIL+VGVNGVGKTT IG Sbjct: 88 QRRNIQDTADLREVIVEKIVEIYHQE-DDQSEVMNLE-DGRLNVILMVGVNGVGKTTTIG 145 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KVMLAAGDTFR+ AI QLK+W +R D V GSD AA+ Y+A A Sbjct: 146 KLAYRYKMEGKKVMLAAGDTFRAGAIQQLKVWGERVGVDVVSQSEGSDPAAVMYDAINAA 205 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K VD+LI DTAGRL N + LM + KM RV+ R P APH L LDATTGQNAL Q Sbjct: 206 KNKGVDILICDTAGRLQNKANLMQELDKMKRVIGRAVPGAPHEALLCLDATTGQNALSQA 265 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F V +G+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 266 RSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 322 >gi|299536776|ref|ZP_07050084.1| cell division protein ftsY-like protein [Lysinibacillus fusiformis ZC1] gi|298727788|gb|EFI68355.1| cell division protein ftsY-like protein [Lysinibacillus fusiformis ZC1] Length = 423 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 124/304 (40%), Positives = 188/304 (61%), Gaps = 13/304 (4%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 S +K G T + D+++ R++D+ EELEDLL+++D+G +++++L Sbjct: 106 SITQKFKAGLEKTRNSFTSKVNDLVARYRKVDEDFFEELEDLLLQADVGFETVMELMDKL 165 Query: 71 ---LTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + ++ KD + + L ++ E + ++ L+ + + + VIL VGVNGV Sbjct: 166 RYEVQRKNIKDTNGIQAVISEKLVEIYEQGEEDIIELTMQPDGELT----VILFVGVNGV 221 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+ ++ G V+LAAGDTFR+ AIDQL++W DR + + GSD AA+ Sbjct: 222 GKTTTIGKLAHRLKSQGKTVVLAAGDTFRAGAIDQLQVWGDRVGCEVIKQSEGSDPAAVM 281 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+ +K DVLI DTAGRL N LM + K+ RV+ R P+APH VL LDATTG Sbjct: 282 YDAIRAAKNRKADVLICDTAGRLQNKVNLMNELEKVHRVISREIPNAPHEVLLALDATTG 341 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL Q + F TG+++TK+DGTA+GG ++ I IPV F+G+GE ++DL+PF Sbjct: 342 QNALVQAQTFKEATNVTGIVLTKLDGTAKGGIVLAIRNKLHIPVKFVGLGEKMDDLQPFD 401 Query: 303 AKDF 306 A+ + Sbjct: 402 AERY 405 >gi|167835367|ref|ZP_02462250.1| signal recognition particle-docking protein FtsY [Burkholderia thailandensis MSMB43] Length = 327 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 131/302 (43%), Positives = 183/302 (60%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + ++ L Sbjct: 32 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGALR 87 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ +L PL K + P V+++ GVNG GKTT IGK Sbjct: 88 EKVRTGRLTDPQQVKDALRGLLVDLLTPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSIGK 146 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 147 LAKHLQSFNQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 205 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 206 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 265 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+GVGE + DL+PF A++F+ + Sbjct: 266 AFDDTLGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFADAL 325 Query: 311 TG 312 G Sbjct: 326 LG 327 >gi|288927529|ref|ZP_06421376.1| signal recognition particle-docking protein FtsY [Prevotella sp. oral taxon 317 str. F0108] gi|288330363|gb|EFC68947.1| signal recognition particle-docking protein FtsY [Prevotella sp. oral taxon 317 str. F0108] Length = 317 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 131/297 (44%), Positives = 186/297 (62%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG T + +T I+ + ++DD V ++LE++LI SD+GV KI+E + T R Sbjct: 15 LDKGLEKTKQSVFSKLTRAIAGKSKVDDEVLDDLEEILITSDVGVDTTLKIIERIET-RV 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLSKPFN--WDF--SHRPHVILVVGVNGVGKTTVIG 129 A+D VS + + E I +L + N W+ + P+VILVVGVNGVGKTT IG Sbjct: 74 ARDKYVSTSELNNILKEEITALLSENNTQDNDSWELPDTGNPYVILVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG KV L A DTFR+AA++Q+ IW +R V ++GSD A++A++ A Sbjct: 134 KLAHQFKQAGKKVYLGAADTFRAAAVEQICIWGERVGVPVVKQQMGSDPASVAFDTLSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A DV+IIDTAGRLHN LM + K+ V+K++ P AP+ VL VLD +TGQNA Q Sbjct: 194 KANGADVVIIDTAGRLHNKVGLMNELKKIKEVMKKVLPEAPNEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F AV T L +TK+DGTA+GG +I I K+PV ++G+GEG+ DL+ F + F Sbjct: 254 KQFSAVTNITALAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQLFNRQHF 310 >gi|283850392|ref|ZP_06367681.1| signal recognition particle-docking protein FtsY [Desulfovibrio sp. FW1012B] gi|283574418|gb|EFC22389.1| signal recognition particle-docking protein FtsY [Desulfovibrio sp. FW1012B] Length = 626 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 125/299 (41%), Positives = 188/299 (62%), Gaps = 3/299 (1%) Query: 16 KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 KL++G A T ++ + I ++ S +D+ EELE++L+ +D+G A K++ L + Sbjct: 329 KLSEGLAKTKEQIVKRIDGLLGSHAVIDEAFWEELEEILLMADVGFEPAAKLLGSLRAEV 388 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 + + V ++ L H++ P + P VI+++GVNGVGKTT I KL+ + Sbjct: 389 RRRGTTDPAVFKEI--LRHELSEIFRTPKTIRAFNPPEVIMMIGVNGVGKTTTIAKLAHR 446 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G KV++AAGDTFR+AAI+Q++IWA R A F GSD AA+A+EA +A A+ V Sbjct: 447 DIMQGKKVLIAAGDTFRAAAIEQMQIWAKRVGAGFYTKGEGSDPAAVAFEAMDRALAEGV 506 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 DVL +DTAGRLH + LM + K+ RVL + P APH + VLDATTGQNAL Q +F+ Sbjct: 507 DVLYLDTAGRLHTKANLMEELKKIRRVLGKKHPGAPHRSVLVLDATTGQNALSQTRLFNE 566 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 AG +I+TK+DGTA+GG ++ I ++ IP+ ++G+GE + DL PF +DF+ + G Sbjct: 567 AAGVDEIILTKLDGTAKGGVVVGIALSFGIPITYVGLGEKMEDLRPFDGQDFAQALLGV 625 >gi|71909330|ref|YP_286917.1| signal recognition particle-docking protein FtsY [Dechloromonas aromatica RCB] gi|71848951|gb|AAZ48447.1| signal recognition particle-docking protein FtsY [Dechloromonas aromatica RCB] Length = 361 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 130/299 (43%), Positives = 188/299 (62%), Gaps = 9/299 (3%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL- 70 SW +L KG A T + + I S ++DD + EELE LL+ SD G+ Q +++EL Sbjct: 62 SWRERLFKGLAKTRAQWGGKLKSIFSRGKVDDELLEELETLLLTSDCGIEATQHLLDELK 121 Query: 71 -LTKRYAKDV--SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 KR D ++Q+ L+DV + + L PL +P ++ +H+P VI++ GVNG GKTT Sbjct: 122 KAAKRDKLDTPEAIQKALHDV---LLETLQPLEQPLDFS-THKPFVIMIAGVNGAGKTTS 177 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+K G V+LAAGDTFR+AA +QL+ W +R + + + G D AA+ ++A Sbjct: 178 IGKLAKYFQTQGKSVLLAAGDTFRAAAREQLETWGERNNVTVIAQDNG-DPAAVVFDAIS 236 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+A+ +D+++ DTAGRL LM I K+ RV+++++P PH L VLDA GQNAL+ Sbjct: 237 AAKARGIDIVLADTAGRLPTQLHLMEEIAKVRRVIQKIEPEGPHETLLVLDANIGQNALQ 296 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QV+ F TGL++TK+DGTA+GG + I P+ F+GVGE I+DL PF AKDF Sbjct: 297 QVKAFDKAIKVTGLVLTKLDGTAKGGVVTAIARQCPKPIRFIGVGEQIDDLRPFSAKDF 355 >gi|261364318|ref|ZP_05977201.1| signal recognition particle-docking protein FtsY [Neisseria mucosa ATCC 25996] gi|288567574|gb|EFC89134.1| signal recognition particle-docking protein FtsY [Neisseria mucosa ATCC 25996] Length = 483 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 118/297 (39%), Positives = 183/297 (61%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G + K+ + + + ++D+ + EELE +LI SD+G+ + +++++ Sbjct: 182 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 241 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 242 RNRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 301 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W +R + + G D+AA+ ++A + A Sbjct: 302 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTG-DSAAVCFDAVQAA 360 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVLK+ P APH ++ VLDA GQNA+ QV Sbjct: 361 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLKKAMPDAPHEIIVVLDANIGQNAVNQV 420 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F Sbjct: 421 KAFDEALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFNARAF 477 >gi|126451651|ref|YP_001064860.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 1106a] gi|126225293|gb|ABN88833.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 1106a] Length = 476 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 130/302 (43%), Positives = 186/302 (61%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + +++ L Sbjct: 181 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDALR 236 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ ++L PL K + +P V+++ GVNG GKTT IGK Sbjct: 237 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 295 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 296 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 354 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 355 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 414 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ + Sbjct: 415 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 474 Query: 311 TG 312 G Sbjct: 475 LG 476 >gi|76808739|ref|YP_332160.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 1710b] gi|76578192|gb|ABA47667.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 1710b] Length = 476 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 130/302 (43%), Positives = 186/302 (61%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + +++ L Sbjct: 181 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDALR 236 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ ++L PL K + +P V+++ GVNG GKTT IGK Sbjct: 237 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 295 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 296 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 354 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 355 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 414 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ + Sbjct: 415 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 474 Query: 311 TG 312 G Sbjct: 475 LG 476 >gi|330995101|ref|ZP_08319018.1| signal recognition particle-docking protein FtsY [Paraprevotella xylaniphila YIT 11841] gi|329576677|gb|EGG58180.1| signal recognition particle-docking protein FtsY [Paraprevotella xylaniphila YIT 11841] Length = 318 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 126/303 (41%), Positives = 189/303 (62%), Gaps = 8/303 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG T +T ++ + ++DD V + LE++L+ SD+GV I++ + KR Sbjct: 15 LDKGLEKTKESFFGKLTRAVAGKSKVDDDVLDRLEEVLVTSDVGVDTTLNIIDRI-EKRV 73 Query: 76 AKD--VSVQR---VLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 A+D V+V +L D ++ L+ + ++ F +P+VI+VVGVNGVGKTT IG Sbjct: 74 ARDKYVTVNELNDILRDEIASLLTENNTADTEGFVLPEGKKPYVIMVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG KV L A DTFR+AA++QL+IW++R V ++GSD A++A++ A Sbjct: 134 KLAYQFKKAGKKVYLGASDTFRAAAVEQLEIWSERVGVPIVKQQMGSDPASVAFDTLSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A DV++IDTAGRLHN LM + K+ RV++++ P APH V+ VLD +TGQNA Q Sbjct: 194 TANGADVVLIDTAGRLHNKKGLMDELSKIKRVMQKVVPDAPHDVMLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F T + +TK+DGTA+GG +I I KIPV ++G+GEG+ DL+PF K+F Sbjct: 254 KQFTLATEVTSMAITKLDGTAKGGVVIGISDQFKIPVRYIGLGEGVEDLQPFNRKEFVKS 313 Query: 310 ITG 312 + G Sbjct: 314 LFG 316 >gi|228473872|ref|ZP_04058614.1| signal recognition particle-docking protein FtsY [Capnocytophaga gingivalis ATCC 33624] gi|228274713|gb|EEK13547.1| signal recognition particle-docking protein FtsY [Capnocytophaga gingivalis ATCC 33624] Length = 317 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 126/299 (42%), Positives = 180/299 (60%), Gaps = 12/299 (4%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEEL----L 71 L KG + + +T I+ + ++DD + +ELE +L+ SD+GV KI+E + Sbjct: 16 LDKGLEKSKTSFFDKLTRAIAGKSKVDDDILDELEGVLVSSDVGVDTTLKIIERIEKRVA 75 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTV 127 ++Y + R+L E I +L + DFS +P+VI+VVGVNG GKTT Sbjct: 76 QEKYLGTSELNRIL---REEIAALLSQTQRGEEVDFSVPSNKKPYVIMVVGVNGAGKTTT 132 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ + GLKV+L A DTFR+AAIDQL++WA+R V + GSD A++AY+ Sbjct: 133 IGKLAYQFKKKGLKVVLGAADTFRAAAIDQLQVWAERVGVPLVKQQTGSDPASVAYDTLS 192 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A ++ DV+IIDTAGRLHN LM + K+ RV+++L P P +L VLD +TGQNA Sbjct: 193 SALSQGADVVIIDTAGRLHNKVNLMNELSKVKRVMQKLLPETPDEILLVLDGSTGQNAFE 252 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q + F L +TK+DGTA+GG +I I +IPV ++GVGEGI DL+ F +F Sbjct: 253 QAKQFTLATEVNALAITKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIEDLQVFNKYEF 311 >gi|149371256|ref|ZP_01890742.1| signal recognition particle-docking protein FtsY [unidentified eubacterium SCB49] gi|149355394|gb|EDM43953.1| signal recognition particle-docking protein FtsY [unidentified eubacterium SCB49] Length = 318 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 131/302 (43%), Positives = 183/302 (60%), Gaps = 22/302 (7%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ KL K A S ++D V ++LE++L+ SD+GV K+++ + Sbjct: 26 SFFSKLNKAVAGKS--------------KVDASVLDDLEEVLVSSDVGVTTTLKVIDRI- 70 Query: 72 TKRYAKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HR--PHVILVVGVNGVGK 124 R AKD V + + E I +L + F+ H PHVI+VVGVNG GK Sbjct: 71 EARVAKDKYVGTSELNAILREEIAGLLSEIDSGNESQFTIPKHETGPHVIMVVGVNGAGK 130 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+ + S AG KV+L A DTFR+AAIDQL++WADRT+ V +GSD A++A++ Sbjct: 131 TTTIGKLAHQFSKAGHKVVLGAADTFRAAAIDQLQVWADRTNVPIVKQAMGSDPASVAFD 190 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 + + DV+IIDTAGRLHN LM + K+ RV++++ P APH VL VLD +TGQN Sbjct: 191 TLESGVKQNADVIIIDTAGRLHNKINLMNELTKVKRVMQKVIPDAPHDVLLVLDGSTGQN 250 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A Q + F A T L +TK+DGTA+GG +I I +IPV ++GVGEGI+DL+ F Sbjct: 251 AFEQAKQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIDDLQVFNKF 310 Query: 305 DF 306 +F Sbjct: 311 EF 312 >gi|315658480|ref|ZP_07911352.1| cell division protein FtsY [Staphylococcus lugdunensis M23590] gi|315496809|gb|EFU85132.1| cell division protein FtsY [Staphylococcus lugdunensis M23590] Length = 407 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 183/297 (61%), Gaps = 8/297 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT-- 72 K G + +E + ++I+ R++D+ E LE++LI +D+G ++ +EL T Sbjct: 82 KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMQLTDELRTEA 141 Query: 73 -KRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 +R +D + R ++ + E+ H+ S+ N + R +VIL+VGVNGVGKTT IG Sbjct: 142 QRRNIQDTADLREVIVEKIVEIYHQE-DDQSEVMNLE-DGRLNVILMVGVNGVGKTTTIG 199 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KVMLAAGDTFR+ AI QLK+W +R D V GSD AA+ Y+A A Sbjct: 200 KLAYRYKMEGKKVMLAAGDTFRAGAIQQLKVWGERVGVDVVSQSEGSDPAAVMYDAINAA 259 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K VD+LI DTAGRL N + LM + KM RV+ R P APH L LDATTGQNAL Q Sbjct: 260 KNKGVDILICDTAGRLQNKANLMQELDKMKRVIGRAVPGAPHEALLCLDATTGQNALSQA 319 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F V +G+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 320 RSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 376 >gi|332521170|ref|ZP_08397628.1| signal recognition particle-docking protein FtsY [Lacinutrix algicola 5H-3-7-4] gi|332043263|gb|EGI79460.1| signal recognition particle-docking protein FtsY [Lacinutrix algicola 5H-3-7-4] Length = 324 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 131/307 (42%), Positives = 185/307 (60%), Gaps = 21/307 (6%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG TS ++ ++ + ++DD V + LE++L+ SD+GV K++E + R Sbjct: 16 LDKGLEKTSTSFLGKLSKAVAGKSKVDDDVLDNLEEVLVSSDVGVNTTLKVIERI-EARV 74 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSK-----------PFNWDFSHRPHVILVVGV 119 AKD + R+L E I +L + P D P+V++VVGV Sbjct: 75 AKDKYLGTDELNRIL---REEIAGLLSETNSGEETEYKIPTLPPQEDGKKTPYVLMVVGV 131 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+ + GLKV+L A DTFR+AAIDQL++WADR V E+GSD A Sbjct: 132 NGVGKTTTIGKLAYQFKKQGLKVVLGAADTFRAAAIDQLQVWADRVDVPMVRQEMGSDPA 191 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++A++A + ++ DV+IIDTAGRLHN LM + K+ RV++++ APH VL VLD Sbjct: 192 SVAFDALESGVSQDADVIIIDTAGRLHNKVNLMNELTKVKRVMQKVIGDAPHDVLLVLDG 251 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA Q + F A T L +TK+DGTA+GG +I I +IPV ++GVGEGI DL+ Sbjct: 252 STGQNAFEQAKQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIEDLQ 311 Query: 300 PFVAKDF 306 F +F Sbjct: 312 VFNKYEF 318 >gi|167718007|ref|ZP_02401243.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei DM98] Length = 337 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 130/302 (43%), Positives = 185/302 (61%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + ++ L Sbjct: 42 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGALR 97 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ ++L PL K + +P V+++ GVNG GKTT IGK Sbjct: 98 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 156 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 157 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 215 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 216 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 275 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ + Sbjct: 276 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 335 Query: 311 TG 312 G Sbjct: 336 LG 337 >gi|294673494|ref|YP_003574110.1| recognition particle-docking protein FtsY [Prevotella ruminicola 23] gi|294472858|gb|ADE82247.1| recognition particle-docking protein FtsY [Prevotella ruminicola 23] Length = 317 Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 123/296 (41%), Positives = 187/296 (63%), Gaps = 6/296 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV----AVAQKIVEELL 71 L KG T + + +T ++ + ++DD V + LE++LI SD+GV + Q+I E + Sbjct: 15 LDKGLEKTKTSVFDKLTRAVAGKSKVDDDVLDNLEEVLITSDVGVDTTLKIIQRIEERVA 74 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +Y + R+L + ++EL+ + + ++ H+P+VILVVGVNGVGKTT IGK Sbjct: 75 RDKYVSTSELNRILREEIAELLAENNSDDNDNWDLPADHKPYVILVVGVNGVGKTTTIGK 134 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + AG KV L A DTFR+AA++QL IW +R + ++GSD A++A++ + A+ Sbjct: 135 LAWQFKQAGKKVYLGAADTFRAAAVEQLCIWGERVGVPVIKQQMGSDPASVAFDTLQSAK 194 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A DV++IDTAGRLHN LM + K+ V+K++ P AP V+ VLD +TGQNA Q + Sbjct: 195 ANGADVVLIDTAGRLHNKVGLMNELKKIKDVMKKVLPEAPDEVMLVLDGSTGQNAFEQAK 254 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F AV T L +TK+DGTA+GG +I I K+PV ++G+GEG+ DL+ F + F Sbjct: 255 QFAAVTQITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMTDLQLFNKRQF 310 >gi|332879559|ref|ZP_08447254.1| signal recognition particle-docking protein FtsY [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682525|gb|EGJ55427.1| signal recognition particle-docking protein FtsY [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 318 Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 126/303 (41%), Positives = 189/303 (62%), Gaps = 8/303 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG T +T ++ + ++DD V + LE++L+ SD+GV I++ + KR Sbjct: 15 LDKGLEKTKESFFGKLTRAVAGKSKVDDDVLDRLEEVLVTSDVGVDTTLNIIDRI-EKRV 73 Query: 76 AKD--VSVQR---VLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 A+D V+V +L D ++ L+ + ++ F +P+VI+VVGVNGVGKTT IG Sbjct: 74 ARDKYVTVNELNDILRDEIASLLTENNTADTEGFVLPEGKKPYVIMVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG KV L A DTFR+AA++QL+IW++R V ++GSD A++A++ A Sbjct: 134 KLAYQFKKAGKKVYLGASDTFRAAAVEQLEIWSERVGVPIVKQQMGSDPASVAFDTLSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A DV++IDTAGRLHN LM + K+ RV++++ P APH V+ VLD +TGQNA Q Sbjct: 194 MANGADVVLIDTAGRLHNKKGLMDELSKIKRVMQKVVPDAPHDVMLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F T + +TK+DGTA+GG +I I KIPV ++G+GEG+ DL+PF K+F Sbjct: 254 KQFTLATEVTSMAITKLDGTAKGGVVIGISDQFKIPVRYIGLGEGVEDLQPFNRKEFVKS 313 Query: 310 ITG 312 + G Sbjct: 314 LFG 316 >gi|167037691|ref|YP_001665269.1| signal recognition particle-docking protein FtsY [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116106|ref|YP_004186265.1| signal recognition particle-docking protein FtsY [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856525|gb|ABY94933.1| signal recognition particle-docking protein FtsY [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929197|gb|ADV79882.1| signal recognition particle-docking protein FtsY [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 319 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 132/314 (42%), Positives = 198/314 (63%), Gaps = 17/314 (5%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVA 63 + A E + +K+ +G T L I I++ R++D+ + EELE++LI +DIG++ Sbjct: 13 ETAEEKKGFFQKIKEGLLKTRENLTSKIDSIVTIGRKIDEELLEELEEILILADIGISTT 72 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILV 116 KI+E + K + +R +YD S++ ++++L +PF P VIL Sbjct: 73 SKIIEGIRQK------AKERKIYDASQIKELLAEEVYEILQKDVEPFTL---TSPMVILN 123 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGKL+ G KVMLAAGDTFR+AAIDQL+IWA+R + + + GS Sbjct: 124 VGVNGVGKTTTIGKLAYLYKKEGKKVMLAAGDTFRAAAIDQLEIWAERVNCPIIKHQEGS 183 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D A++ ++ + ++A+ +D+LI DTAGRLHN LM + K+ RV+ R P A V Sbjct: 184 DPASVIFDGIQASKARGIDILICDTAGRLHNKKNLMEELRKIRRVIDREYPEARVETFLV 243 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDATTGQNAL+Q ++F V+ TG+++TK+DGTA+GG ++ I +P+ ++G+GEGI Sbjct: 244 LDATTGQNALQQAKIFKEVSDITGIVLTKLDGTAKGGIVVAIKSELNVPIRYIGIGEGIE 303 Query: 297 DLEPFVAKDFSAVI 310 DL+ F AK F + I Sbjct: 304 DLQAFDAKSFVSAI 317 >gi|167737024|ref|ZP_02409798.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 14] Length = 337 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 130/302 (43%), Positives = 185/302 (61%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + ++ L Sbjct: 42 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGALR 97 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ ++L PL K + +P V+++ GVNG GKTT IGK Sbjct: 98 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 156 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 157 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 215 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 216 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 275 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ + Sbjct: 276 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 335 Query: 311 TG 312 G Sbjct: 336 LG 337 >gi|298369773|ref|ZP_06981090.1| signal recognition particle-docking protein FtsY [Neisseria sp. oral taxon 014 str. F0314] gi|298282330|gb|EFI23818.1| signal recognition particle-docking protein FtsY [Neisseria sp. oral taxon 014 str. F0314] Length = 410 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 118/296 (39%), Positives = 185/296 (62%), Gaps = 2/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW +L +G A + ++ + + + ++D+ + EELE +LI SD+G+ + +++++ Sbjct: 110 SWAARLRQGLAKSRNQMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDVR 169 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IGK Sbjct: 170 NRVSLKGLKDGNELRGALKEAVYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGK 229 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ ++A + A+ Sbjct: 230 LAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAAK 288 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV+ Sbjct: 289 ARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVK 348 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F Sbjct: 349 AFDEALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFNARAF 404 >gi|86142309|ref|ZP_01060819.1| signal recognition particle-docking protein FtsY [Leeuwenhoekiella blandensis MED217] gi|85831061|gb|EAQ49518.1| signal recognition particle-docking protein FtsY [Leeuwenhoekiella blandensis MED217] Length = 317 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 125/276 (45%), Positives = 175/276 (63%), Gaps = 14/276 (5%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYD-----VSE 90 ++DD V ++LE++L+ SD+GVA KI+E + + +Y + +L D +SE Sbjct: 40 KVDDEVLDDLEEVLVSSDVGVATTIKIIERIEARVARDKYLGTDELNAILRDEIAGLMSE 99 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 S P S +P+VI+VVGVNGVGKTT IGKL+ + GLKV+L A DTF Sbjct: 100 TNSGEATDFSIP-----SKKPYVIMVVGVNGVGKTTTIGKLAHQFKSKGLKVVLGAADTF 154 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R+AAIDQL+IWADR + ++GSD A++A++ + A DV+IIDTAGRLHN Sbjct: 155 RAAAIDQLQIWADRVDVPIIKQQMGSDPASVAFDTVQSAVKLDADVVIIDTAGRLHNKVN 214 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + K+ RV++++ P AP VL VLD +TGQNA Q + F A T L +TK+DGTA Sbjct: 215 LMKELTKVKRVMQKVVPDAPDEVLLVLDGSTGQNAFEQAKQFTAATEVTSLAVTKLDGTA 274 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +GG +I I +IPV ++GVGEGI+DL+ F +F Sbjct: 275 KGGVVIGISDQFQIPVKYIGVGEGIDDLQVFNKIEF 310 >gi|157804145|ref|YP_001492694.1| 50S ribosomal protein L32 [Rickettsia canadensis str. McKiel] gi|157785408|gb|ABV73909.1| 50S ribosomal protein L32 [Rickettsia canadensis str. McKiel] Length = 303 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 128/303 (42%), Positives = 194/303 (64%), Gaps = 3/303 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 +S KL + + TS K+ EGI I ++L++ EELE+LLI SD+ V+V I+EEL Sbjct: 2 ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLNEETLEELEELLISSDMSVSVVTNIIEEL 61 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++ +++ V +++LI + L+ PF+ D +++ +V+LV GVNG GKTT IGK Sbjct: 62 KKVKFNEEIDSSTVKAALAKLIEEQLLNSEIPFSLD-ANKLNVVLVCGVNGAGKTTTIGK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ S G K+ +AA DTFR+AA++QL I DR +A + E +D A++AY +++ Sbjct: 121 LAAMYSAQGKKIAVAACDTFRAAAVNQLSILIDRANALLITGEESADPASVAYRGMEESI 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249 + +D+L IDTAGRLHN LM + K+++V+K+LD P HS+L V+DA TGQN Q Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELTKIVKVIKKLDESTPTHSIL-VIDAITGQNTYNQA 239 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E FH TGLI+TK+DG+A+ G ++ +V +PVYF+G+GE I DL+ F DF+ Sbjct: 240 EHFHNATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPVYFIGIGEKIEDLKIFDRHDFAKS 299 Query: 310 ITG 312 + G Sbjct: 300 LVG 302 >gi|281425610|ref|ZP_06256523.1| signal recognition particle-docking protein FtsY [Prevotella oris F0302] gi|299140826|ref|ZP_07033964.1| signal recognition particle-docking protein FtsY [Prevotella oris C735] gi|281400197|gb|EFB31028.1| signal recognition particle-docking protein FtsY [Prevotella oris F0302] gi|298577792|gb|EFI49660.1| signal recognition particle-docking protein FtsY [Prevotella oris C735] Length = 316 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 126/297 (42%), Positives = 187/297 (62%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG T + +T ++ + ++DD V + LE++LI SD+GV K++E + +R Sbjct: 15 LDKGLEKTKESVFSKLTRAVAGKSKVDDEVLDNLEEVLITSDVGVDTTLKVIERI-EERV 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLSKPFN--WDF--SHRPHVILVVGVNGVGKTTVIG 129 A+D VS + + E I +L + N W+ H+P+VILVVGVNGVGKTT IG Sbjct: 74 ARDKYVSTSELNGILREEIASLLAENNTDDNDSWELPSDHKPYVILVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + +AG KV L A DTFR+AA++Q+ IW +R + ++GSD A++A++ + A Sbjct: 134 KLAYQFKNAGKKVFLGAADTFRAAAVEQISIWGERVGVPVIKQQMGSDPASVAFDTLQSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A DV++IDTAGRLHN LM + K+ V+K++ P AP V+ VLD +TGQNA Q Sbjct: 194 KANGADVVLIDTAGRLHNKVGLMNELKKIKEVMKKVLPEAPDEVMLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F AV T L +TK+DGTA+GG +I I K+PV ++G+GE + DL+ F K+F Sbjct: 254 KQFSAVTNITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEQMEDLQLFNRKEF 310 >gi|157826227|ref|YP_001493947.1| Signal recognition particle-docking protein FtsY [Rickettsia akari str. Hartford] gi|157800185|gb|ABV75439.1| Signal recognition particle-docking protein FtsY [Rickettsia akari str. Hartford] Length = 303 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 130/303 (42%), Positives = 191/303 (63%), Gaps = 3/303 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 +S KL + + TS K+ EGI I ++LD EELE+LLI SD+ ++V I+EE Sbjct: 2 ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDTETLEELEELLIASDMSISVVTNIIEEF 61 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++ K++ V ++ELI + L PF + ++ +VILV GVNG GKTT IGK Sbjct: 62 KKVKFDKEIDSDTVKEALAELIEQQLSKAEIPFTLN-ENKLNVILVCGVNGAGKTTTIGK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ S G KV +AA DTFR+AA++QL W DR +A + E +D A++AY A +++ Sbjct: 121 LAAMYSAQGKKVAVAACDTFRAAAVNQLSSWVDRANALLITGEESADPASVAYRAMEESI 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQV 249 + +D+L +DTAGRLHN LM + K+++V+ +LD HA HS+L V+DA TGQN Q+ Sbjct: 181 KQNIDMLFLDTAGRLHNKKNLMDELSKIVKVITKLDGHAHTHSIL-VIDAITGQNTYNQI 239 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F+ TGLI+TK+DG+A+ G L+ +V +PVYF+G+GE I DL+ F DF+ Sbjct: 240 EHFNNATNLTGLIVTKLDGSAKAGVLVGVVQKFNLPVYFIGIGEKIEDLKIFHRHDFAKS 299 Query: 310 ITG 312 + G Sbjct: 300 LVG 302 >gi|83718719|ref|YP_441024.1| signal recognition particle-docking protein FtsY [Burkholderia thailandensis E264] gi|257140323|ref|ZP_05588585.1| signal recognition particle-docking protein FtsY [Burkholderia thailandensis E264] gi|83652544|gb|ABC36607.1| signal recognition particle-docking protein FtsY [Burkholderia thailandensis E264] Length = 433 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 131/302 (43%), Positives = 184/302 (60%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SWI +L G A TS IT++ + ++DD + EELE L+ SD GV + ++ L Sbjct: 138 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGVDATEHLLGALR 193 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ ++L PL + + P V+++ GVNG GKTT IGK Sbjct: 194 EKVRTGRLTDPQQVKDALRGLLVELLTPLEQSLVLGRAQ-PLVMMIAGVNGAGKTTSIGK 252 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 253 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 311 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 312 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 371 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+GVGE + DL+PF A++F+ + Sbjct: 372 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFADAL 431 Query: 311 TG 312 G Sbjct: 432 LG 433 >gi|313201669|ref|YP_004040327.1| signal recognition particle-docking protein ftsy [Methylovorus sp. MP688] gi|312440985|gb|ADQ85091.1| signal recognition particle-docking protein FtsY [Methylovorus sp. MP688] Length = 344 Score = 226 bits (576), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 125/301 (41%), Positives = 186/301 (61%), Gaps = 3/301 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 A LSW +L G A T +L + + ++D+ V EELE +L+ SD+GVA Q + Sbjct: 40 AENKLSWTERLKNGLAKTRSQLGNQLASLFGGGKIDEDVYEELETILLTSDVGVAATQAL 99 Query: 67 VEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 +E++ + + +S ++ + + + ++L PL KP +H+P VI++ GVNG GKT Sbjct: 100 LEQIRQRVKRQSLSDTTQLKQALKDALLELLAPLEKPL-VTTTHQPFVIMLAGVNGAGKT 158 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+ G V++AAGDTFR+AA +QL+ W DR + V E G D AA+ ++A Sbjct: 159 TSIGKLANLFQVQGKSVLIAAGDTFRAAAREQLQAWGDRNNVHVVAQESG-DPAAVIFDA 217 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+A+ +D+++ DTAGRL LM I K+ RV+ + P APH +L VLDA TGQNA Sbjct: 218 VNSAKARNIDIVLADTAGRLPTQLNLMEEIRKVQRVIGKALPGAPHEILLVLDANTGQNA 277 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + QV+ F G TGL+++K+DGTA+GG + I IP+ ++GVGE I DL PF A++ Sbjct: 278 ISQVKAFDDALGVTGLVLSKLDGTAKGGVIAAIAQARPIPIRYIGVGESIADLRPFKAEE 337 Query: 306 F 306 F Sbjct: 338 F 338 >gi|163787980|ref|ZP_02182426.1| putative recognition particle-docking protein [Flavobacteriales bacterium ALC-1] gi|159876300|gb|EDP70358.1| putative recognition particle-docking protein [Flavobacteriales bacterium ALC-1] Length = 324 Score = 226 bits (576), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 130/308 (42%), Positives = 182/308 (59%), Gaps = 28/308 (9%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ KL K A S ++DD V + LE++L+ SD+GV K++E + Sbjct: 26 SFFNKLNKAVAGKS--------------KVDDDVLDNLEEILVTSDVGVNTTLKVIERI- 70 Query: 72 TKRYAKD--VSVQRVLYDVSELIHKMLMPLSK-----------PFNWDFSHRPHVILVVG 118 +R AKD + + + E I +L + P D S P+V++VVG Sbjct: 71 EERVAKDKYLGTSELNKILREEIAGLLSETNSGEETDYTIPELPTQEDGSKTPYVLMVVG 130 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNGVGKTT IGKL+ + GLKV+L A DTFR+AAIDQL++WADR + E+GSD Sbjct: 131 VNGVGKTTTIGKLAYQFKKQGLKVVLGAADTFRAAAIDQLQVWADRVDVPMIRQEMGSDP 190 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 A++A++A + + DV+IIDTAGRLHN LM + K+ RV++++ APH VL VLD Sbjct: 191 ASVAFDALQSGVNQDADVIIIDTAGRLHNKVNLMNELTKVKRVMQKVVGDAPHDVLLVLD 250 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 +TGQNA Q + F A T L +TK+DGTA+GG +I I +IPV ++GVGEGI DL Sbjct: 251 GSTGQNAFEQAKQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIEDL 310 Query: 299 EPFVAKDF 306 + F +F Sbjct: 311 QVFNKYEF 318 >gi|167909452|ref|ZP_02496543.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 112] Length = 345 Score = 226 bits (576), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 130/302 (43%), Positives = 185/302 (61%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + ++ L Sbjct: 50 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGALR 105 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ ++L PL K + +P V+++ GVNG GKTT IGK Sbjct: 106 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 164 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 165 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 223 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 224 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 283 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ + Sbjct: 284 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 343 Query: 311 TG 312 G Sbjct: 344 LG 345 >gi|325139507|gb|EGC62047.1| signal recognition particle-docking protein FtsY [Neisseria meningitidis CU385] Length = 421 Score = 226 bits (576), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 119/297 (40%), Positives = 185/297 (62%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW +L +G + K+ + + + ++D+ + EELE +LI SD+G+ + +++++ Sbjct: 120 LSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ ++A + A Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415 >gi|167814132|ref|ZP_02445812.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 91] Length = 342 Score = 226 bits (576), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 130/302 (43%), Positives = 185/302 (61%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + ++ L Sbjct: 47 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGALR 102 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ ++L PL K + +P V+++ GVNG GKTT IGK Sbjct: 103 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 161 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 162 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 220 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 221 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 280 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ + Sbjct: 281 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 340 Query: 311 TG 312 G Sbjct: 341 LG 342 >gi|150007588|ref|YP_001302331.1| recognition particle-docking protein FtsY [Parabacteroides distasonis ATCC 8503] gi|255013883|ref|ZP_05286009.1| recognition particle-docking protein FtsY [Bacteroides sp. 2_1_7] gi|256839775|ref|ZP_05545284.1| signal recognition particle-docking protein FtsY [Parabacteroides sp. D13] gi|262381913|ref|ZP_06075051.1| signal recognition particle-docking protein FtsY [Bacteroides sp. 2_1_33B] gi|298375534|ref|ZP_06985491.1| signal recognition particle-docking protein FtsY [Bacteroides sp. 3_1_19] gi|301310446|ref|ZP_07216385.1| signal recognition particle-docking protein FtsY [Bacteroides sp. 20_3] gi|149936012|gb|ABR42709.1| recognition particle-docking protein FtsY [Parabacteroides distasonis ATCC 8503] gi|256738705|gb|EEU52030.1| signal recognition particle-docking protein FtsY [Parabacteroides sp. D13] gi|262297090|gb|EEY85020.1| signal recognition particle-docking protein FtsY [Bacteroides sp. 2_1_33B] gi|298268034|gb|EFI09690.1| signal recognition particle-docking protein FtsY [Bacteroides sp. 3_1_19] gi|300832020|gb|EFK62651.1| signal recognition particle-docking protein FtsY [Bacteroides sp. 20_3] Length = 317 Score = 226 bits (576), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 126/297 (42%), Positives = 186/297 (62%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG + T + IT I+ + ++DD V + LE++LI SD+GV KI++ + KR Sbjct: 15 LDKGLSKTKESVFSKITKAIAGKSKVDDDVLDNLEEVLITSDVGVDTTLKIIDRI-EKRV 73 Query: 76 AKD--VSVQRVLY----DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 A+D V+ Q + +++ L+ + ++ F +P+VI+VVGVNGVGKTT IG Sbjct: 74 ARDKYVTTQELTTLLRDEIASLLTENNTEDAEGFALPEGKKPYVIMVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG KV L A DTFR+AA++QL IW++R V +GSD A++A++ A Sbjct: 134 KLAYQFKKAGKKVYLGAADTFRAAAVEQLVIWSERVGVPIVKQNMGSDPASVAFDTLSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A DV+IIDTAGRLHN LM + K+ V+K++ P APH +L VLD +TGQNA Q Sbjct: 194 KANDADVVIIDTAGRLHNKINLMNELTKIKNVMKKVIPDAPHEILLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F A L +TK+DGTA+GG +I I +IPV ++G+GEG+ DL+ F ++F Sbjct: 254 KQFTAATEVNALAVTKLDGTAKGGVVIGISDHFRIPVKYIGLGEGMEDLQVFRKREF 310 >gi|325135260|gb|EGC57883.1| signal recognition particle-docking protein FtsY [Neisseria meningitidis M13399] Length = 421 Score = 226 bits (576), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 119/297 (40%), Positives = 185/297 (62%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW +L +G + K+ + + + ++D+ + EELE +LI SD+G+ + +++++ Sbjct: 120 LSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ ++A + A Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNV-TVISQTTGDSAAVCFDAVQAA 298 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415 >gi|314936603|ref|ZP_07843950.1| cell division protein FtsY [Staphylococcus hominis subsp. hominis C80] gi|313655222|gb|EFS18967.1| cell division protein FtsY [Staphylococcus hominis subsp. hominis C80] Length = 409 Score = 226 bits (576), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 125/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K G + +E + ++I+ R +D+ E LE++LI +D+G ++ +EL T+ Sbjct: 81 KFKAGLEKSRENFQEQLNNLIARYRTVDEDFFEALEEMLITADVGFNTVMQLTDELRTEA 140 Query: 75 YAKDVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 +++ L +V E+ H+ S+ N + R +VIL+VGVNGVGKTT IG Sbjct: 141 QRRNIKETEGLREVIVEKIVEIYHQE-DDHSEAMNIE-DGRLNVILMVGVNGVGKTTTIG 198 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KVMLAAGDTFR+ AI+QL++W DR + + GSD AA+ Y+A A Sbjct: 199 KLAHRYKMEGKKVMLAAGDTFRAGAIEQLQVWGDRVGVEVIRQSEGSDPAAVVYDAINAA 258 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K VD+LI DTAGRL N S LM + KM RV+ R P APH L LDATTGQNAL Q Sbjct: 259 KNKGVDILICDTAGRLQNKSNLMQELDKMKRVISRAVPDAPHEALLCLDATTGQNALSQA 318 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F V +G+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 319 RSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKLDDLQPFNPESY 375 >gi|147678072|ref|YP_001212287.1| signal recognition particle GTPase [Pelotomaculum thermopropionicum SI] gi|146274169|dbj|BAF59918.1| signal recognition particle GTPase [Pelotomaculum thermopropionicum SI] Length = 303 Score = 226 bits (576), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 137/298 (45%), Positives = 192/298 (64%), Gaps = 3/298 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L + A T E I +++ RR +D+ + EELE+LL+++D+GV A +VE Sbjct: 1 MGFFNRLKESLAKTRQSFVEKIDNLVHRRRAIDEELYEELEELLVQADVGVNTAADLVER 60 Query: 70 LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + + V L ++ E I +ML S P N+ S P VI+VVGVNGVGKTT I Sbjct: 61 VRRTVRERRVEEAGELKNILKEHIMEMLEGDSAPVNFS-SVPPTVIMVVGVNGVGKTTTI 119 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ G KV+L A DTFR+AAIDQL+IWA R + + G+D AA+A+++ + Sbjct: 120 GKLAYYYKSQGKKVLLGAADTFRAAAIDQLEIWAGRAGVELIKHREGADPAAVAFDSLQA 179 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A++ D+LIIDTAGRLH S LM + K+ RVL R P APH VL VLDATTGQNA+ Q Sbjct: 180 AKARRADLLIIDTAGRLHTKSNLMEELKKVGRVLDRAMPGAPHEVLLVLDATTGQNAINQ 239 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F G TG+ +TK+DG+A+GG +I I + IPV +G+GEGI+DL PF A++F Sbjct: 240 TRLFGEAVGVTGIALTKLDGSAKGGVVIAIKQSLDIPVKMIGIGEGIDDLRPFNAREF 297 >gi|291519528|emb|CBK74749.1| signal recognition particle-docking protein FtsY [Butyrivibrio fibrisolvens 16/4] Length = 312 Score = 226 bits (576), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 128/300 (42%), Positives = 186/300 (62%), Gaps = 8/300 (2%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + ++L KG T + + I + +D+ EELE++LI DIGV + I+++ Sbjct: 8 IPFWKRLVKGLTKTRDNFIKSMDYIFNGFSNIDEDFYEELEEVLIMGDIGVRTTETILDD 67 Query: 70 L---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 L + K + K+ + + ++E+ +M + + ++DF + V+LV+GVNGVGKTT Sbjct: 68 LKEAVKKEHIKEPAECKEFL-INEIKQQMSLDET---SFDFEKKTSVVLVIGVNGVGKTT 123 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+ K+ G KVM+A DTFR+AA DQLK WADR ADFV GSD AA+ Y+A Sbjct: 124 TIGKLAGKLKANGKKVMVAGADTFRAAASDQLKEWADRAGADFVGGPEGSDPAAVVYDAV 183 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A+A+ +DVL++DTAGRLHN LM + K+ + + P A L VLD TTGQNAL Sbjct: 184 HAAKARGIDVLLVDTAGRLHNKKNLMNELSKINNTITKEFPEAYRETLIVLDGTTGQNAL 243 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q + F V +G+++TK+DGTA+GG I I K+PV ++GVGE I+DLE F A +F Sbjct: 244 VQAKEFSEVTDISGIVLTKLDGTAKGGIAIAIQSELKLPVKYIGVGETIDDLEKFNADEF 303 >gi|254251373|ref|ZP_04944691.1| Signal recognition particle GTPase [Burkholderia dolosa AUO158] gi|124893982|gb|EAY67862.1| Signal recognition particle GTPase [Burkholderia dolosa AUO158] Length = 386 Score = 226 bits (576), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 130/307 (42%), Positives = 186/307 (60%), Gaps = 7/307 (2%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 AS SW+ +L G A T IT + + ++D+ + EELE L+ SD GV + + Sbjct: 86 ASAKKSWLARLKTGLAKTG----SSITGVFVNTKIDEDLYEELETALLMSDAGVDATEYL 141 Query: 67 VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 + L K R + Q+V + +L+ ++L PL K + P V+++ GVNG GKT Sbjct: 142 LGALREKVRVGRLTDPQQVKSALRDLLVELLTPLEKSLVLGRAQ-PLVMMIAGVNGAGKT 200 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K + V+LAAGDTFR+AA +QL +W +R + V E G D AA+ ++A Sbjct: 201 TSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDA 259 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+A+K+DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNA Sbjct: 260 VSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTGQNA 319 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QV+ F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF A++ Sbjct: 320 LTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAEE 379 Query: 306 FSAVITG 312 F+ + G Sbjct: 380 FADALLG 386 >gi|319953950|ref|YP_004165217.1| signal recognition particle-docking protein ftsy [Cellulophaga algicola DSM 14237] gi|319422610|gb|ADV49719.1| signal recognition particle-docking protein FtsY [Cellulophaga algicola DSM 14237] Length = 319 Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 123/273 (45%), Positives = 174/273 (63%), Gaps = 7/273 (2%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLM 97 ++DD V + LE++L+ SD+GV KI++ + R AKD V + + E I ++L Sbjct: 40 KVDDDVLDNLEEVLVASDVGVNTTLKIIKGI-EARVAKDKYVGTDELNEILREEIARLLS 98 Query: 98 PLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 + + +F+ +P+VI+VVGVNGVGKTT IGKL+ + G KV+L AGDTFR+A Sbjct: 99 ETNSGEDVEFTIPKDKKPYVIMVVGVNGVGKTTTIGKLAYQFKKQGYKVVLGAGDTFRAA 158 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 AIDQL+IWADR + ++GSD A++A++ A DV+IIDTAGRLHN LM Sbjct: 159 AIDQLQIWADRVGVPIIKQQMGSDPASVAFDTLSSAVKSDADVVIIDTAGRLHNKINLMN 218 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + K+ RV++++ P P+ VL VLD +TGQNA Q + F T L +TK+DGTA+GG Sbjct: 219 ELSKVSRVMQKVVPDTPNDVLLVLDGSTGQNAFEQAKQFTKATNVTSLAVTKLDGTAKGG 278 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +I I KIPV ++GVGEGI DL+ F +F Sbjct: 279 VVIGISDQFKIPVRYIGVGEGIEDLQVFNKYEF 311 >gi|257095545|ref|YP_003169186.1| signal recognition particle-docking protein FtsY [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048069|gb|ACV37257.1| signal recognition particle-docking protein FtsY [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 329 Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 128/301 (42%), Positives = 190/301 (63%), Gaps = 3/301 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 A + SW ++L G A T + + + S ++DD + EELE LL+ SD+G+ Q + Sbjct: 25 APTASSWRQRLKSGLARTRAQFGGKLKSLFSRGKVDDELLEELEALLLTSDVGLDATQHL 84 Query: 67 VEEL-LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 + +L + + K + + + + +SE ++++L PL + + SHRP +I++ GVNG GKT Sbjct: 85 LYQLKMRAKRDKLETPEAIQHALSEALYELLRPLEEALDLS-SHRPFIIMIAGVNGAGKT 143 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K GL V+LAAGDTFR+AA +QL+ W +R + + + G D AA+ ++A Sbjct: 144 TSIGKLAKHFQAHGLSVLLAAGDTFRAAAREQLQTWGERNNVTVIAQQSG-DPAAVIFDA 202 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+A+ +DV++ DTAGRL LM I K+ RV+++ DP APH L VLDAT GQN Sbjct: 203 IAAAKARGIDVVLADTAGRLPTQLHLMDEIAKVRRVIQKADPTAPHETLLVLDATFGQNT 262 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L+QV F +GL++TK+DGTA+GG + I PV F+GVGEGI+DL PF A+D Sbjct: 263 LQQVMAFDKAIQVSGLVLTKLDGTAKGGVVAAIARQCPKPVRFIGVGEGIDDLRPFSARD 322 Query: 306 F 306 F Sbjct: 323 F 323 >gi|91203371|emb|CAJ71024.1| strongly similar to the signal recognition particle receptor of E. coli [Candidatus Kuenenia stuttgartiensis] Length = 423 Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 136/300 (45%), Positives = 185/300 (61%), Gaps = 7/300 (2%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQ 64 + E ++ KL KG T + + D +S R+ +D+ EELED+LI +DIGV Q Sbjct: 115 IKKEPVAVPGKLKKGLEKTRGRFWLRLKDFLSFRQGIDESALEELEDILIGADIGVRPVQ 174 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNG 121 K++EE+ K ++ + D I L + D + RP VI+VVGVNG Sbjct: 175 KLIEEIREAWKEKAITETSQIND---FIKDRLKDGLHSWQTDIQYADKRPTVIMVVGVNG 231 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT I KL+ + G KVMLAAGDTFR+AA+DQL IW R AD V + GSD AA+ Sbjct: 232 VGKTTSIAKLASFLMKEGKKVMLAAGDTFRAAAVDQLDIWCKRIGADIVKHQTGSDPAAV 291 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 AY+A + + A+ VDVLI+DTAGRLH + LM + K+ RV+K+ P APH VL VLDATT Sbjct: 292 AYDAMEASIARGVDVLIVDTAGRLHTHDNLMKELIKIKRVIKKKIPDAPHEVLLVLDATT 351 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q MF TG+ + K+DGTA+GG ++ + +IPV F+G+GE +D+E F Sbjct: 352 GQNAISQARMFREAVDVTGIFLAKLDGTAKGGIVLGMCNETEIPVKFIGLGEQADDIERF 411 >gi|325854384|ref|ZP_08171583.1| signal recognition particle-docking protein FtsY [Prevotella denticola CRIS 18C-A] gi|325484178|gb|EGC87112.1| signal recognition particle-docking protein FtsY [Prevotella denticola CRIS 18C-A] Length = 316 Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 129/292 (44%), Positives = 183/292 (62%), Gaps = 8/292 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG T + +T ++ + ++DD V ++LE++L+ SD+GV KI+ + +R Sbjct: 15 LDKGLEKTKQNVFSKLTRAVAGKSKVDDEVLDDLEEILVTSDVGVDTTIKIIRRI-EERV 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLSKPFN--WDFSH--RPHVILVVGVNGVGKTTVIG 129 AKD VS + + I +L + N W RP+VILVVGVNGVGKTT IG Sbjct: 74 AKDKYVSTSELNGILKSEITALLTENNTGSNDEWTLPENARPYVILVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG KV L A DTFR+AA++Q++IW DR V ++G+D A++A++A + A Sbjct: 134 KLAYQFKQAGKKVYLGAADTFRAAAVEQIQIWGDRVGVPVVKQQMGADPASVAFDALQSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A DV+IIDTAGRLHN LM + K+ V+K++ P APH VL VLD +TGQNA Q Sbjct: 194 KANGADVVIIDTAGRLHNKVGLMNELKKIKDVMKKVVPDAPHEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 F AV T L +TK+DGTA+GG +I I K+PV ++G+GEG+ DL+ F Sbjct: 254 RQFAAVTQITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQLF 305 >gi|163755934|ref|ZP_02163051.1| amidase [Kordia algicida OT-1] gi|161324105|gb|EDP95437.1| amidase [Kordia algicida OT-1] Length = 318 Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 127/301 (42%), Positives = 185/301 (61%), Gaps = 21/301 (6%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ KLTK A S ++DD V + LE++L+ SD+GV KI++ + Sbjct: 26 SFFSKLTKAVAGKS--------------KVDDEVLDNLEEVLVSSDVGVDTTLKIIDRI- 70 Query: 72 TKRYAKDV-----SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 +R AKD + ++L + ++ L+ + + +P+V++VVGVNGVGKT Sbjct: 71 EERVAKDKYLGTDELNKILREEIAALLSETNSGEDTEYTIPADKKPYVLMVVGVNGVGKT 130 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+ + + GLKV+L A DTFR+AAIDQL++WADR V +GSD A++A++A Sbjct: 131 TTIGKLAHQFNKKGLKVVLGAADTFRAAAIDQLQVWADRVGVPIVKQSMGSDPASVAFDA 190 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + A+ DV+IIDTAGRLHN LM + K+ +V++++ APH VL VLD +TGQNA Sbjct: 191 LQSGVAQDADVIIIDTAGRLHNKVNLMKELTKVKKVMQKVIGDAPHDVLLVLDGSTGQNA 250 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 Q + F A T L +TK+DGTA+GG +I I +IPV ++GVGEGI DL+ F + Sbjct: 251 FEQAKQFTAATEVTTLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIEDLQVFNKYE 310 Query: 306 F 306 F Sbjct: 311 F 311 >gi|224827259|ref|ZP_03700353.1| signal recognition particle-docking protein FtsY [Lutiella nitroferrum 2002] gi|224600548|gb|EEG06737.1| signal recognition particle-docking protein FtsY [Lutiella nitroferrum 2002] Length = 358 Score = 226 bits (575), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 123/310 (39%), Positives = 193/310 (62%), Gaps = 15/310 (4%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + V + SW +L G + T KL + + + ++D+ + +ELE +L+ +D+GV Sbjct: 51 EAVPPKKPSWTERLKAGLSKTRDKLGKSLAGLFGGGKIDEDLYDELETVLLTADMGVDAT 110 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILV 116 +++++ + VS+ R L D +EL ++ ++ PL +P + +P+VI++ Sbjct: 111 LHLLKDVRER-----VSL-RGLKDAAELKGALKDSLNDLIGPLEQPLDI-AGRKPYVIMM 163 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 GVNG GKTT IGKL+K G V+LAAGDTFR+AA +QL W +R + + + G Sbjct: 164 AGVNGAGKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLIAWGERNNVTVIAQQSG- 222 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D+AA+ ++A K AQA+ +D+++ DTAGRL LM I K+ RV+++ P APH V+ V Sbjct: 223 DSAAVCFDAIKAAQARGIDIVLADTAGRLPTQLHLMEEIKKVKRVIQKALPEAPHEVMLV 282 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDA GQNA+ QV++F G TGLI+TK+DGTA+GG + I + +P+ F+GVGE I+ Sbjct: 283 LDANIGQNAINQVKVFDEALGLTGLILTKLDGTAKGGVIAAIAKQNPVPLRFVGVGESID 342 Query: 297 DLEPFVAKDF 306 DL PF A+D+ Sbjct: 343 DLRPFNARDY 352 >gi|53718154|ref|YP_107140.1| putative cell division protein [Burkholderia pseudomallei K96243] gi|126441269|ref|YP_001057615.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 668] gi|254181872|ref|ZP_04888469.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 1655] gi|52208568|emb|CAH34504.1| putative cell division protein [Burkholderia pseudomallei K96243] gi|126220762|gb|ABN84268.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 668] gi|184212410|gb|EDU09453.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 1655] Length = 439 Score = 226 bits (575), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 130/302 (43%), Positives = 185/302 (61%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + ++ L Sbjct: 144 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGALR 199 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ ++L PL K + +P V+++ GVNG GKTT IGK Sbjct: 200 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 258 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 259 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 317 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 318 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 377 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ + Sbjct: 378 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 437 Query: 311 TG 312 G Sbjct: 438 LG 439 >gi|255536296|ref|YP_003096667.1| Signal recognition particle receptor protein FtsY (=alpha subunit) [Flavobacteriaceae bacterium 3519-10] gi|255342492|gb|ACU08605.1| Signal recognition particle receptor protein FtsY (=alpha subunit) [Flavobacteriaceae bacterium 3519-10] Length = 318 Score = 226 bits (575), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 127/310 (40%), Positives = 188/310 (60%), Gaps = 15/310 (4%) Query: 11 LSWIRK---------LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGV 60 +SWI+ L KG +S E I+ ++ ++D+ V ++LE++LI SD+G Sbjct: 1 MSWIKNIFKKEEKETLDKGLEKSSQGFFEKISKAVVGKSKVDEEVLDDLEEVLIASDVGA 60 Query: 61 AVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLM--PLSKPFNWDFSHRPHVILV 116 A KI++ + R A+D V + + E I +L+ P + N D + +P+VI+V Sbjct: 61 ATTIKIIQRI-EDRVARDKFVGTDELDRILREEISGLLLENPHASTGNIDETKKPYVIMV 119 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGKL+ + G V+L A DTFR+AA++QL IW++R V ++GS Sbjct: 120 VGVNGVGKTTTIGKLANQFKSEGKSVVLGAADTFRAAAVEQLVIWSERVGVPIVKQQMGS 179 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D A++A++ + A DV+IIDTAGRLHN LM + K+ RV++++ P APH +L V Sbjct: 180 DPASVAFDTVQSGVANNADVVIIDTAGRLHNKVNLMNELTKIKRVMQKVIPDAPHEILLV 239 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LD +TGQNA Q + F L +TK+DGTA+GG +I I +IPV ++GVGE IN Sbjct: 240 LDGSTGQNAFEQAKHFTTATDVNALAITKLDGTAKGGVVIGISDQFQIPVKYIGVGEKIN 299 Query: 297 DLEPFVAKDF 306 DL+ F +F Sbjct: 300 DLQLFNGTEF 309 >gi|134297005|ref|YP_001120740.1| signal recognition particle-docking protein FtsY [Burkholderia vietnamiensis G4] gi|134140162|gb|ABO55905.1| signal recognition particle-docking protein FtsY [Burkholderia vietnamiensis G4] Length = 377 Score = 226 bits (575), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 130/307 (42%), Positives = 186/307 (60%), Gaps = 7/307 (2%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 AS SW+ +L G A T IT + + ++D+ + EELE L+ SD GV + + Sbjct: 77 ASAKKSWLSRLKSGLAKTG----SSITSVFVNTKIDEDLYEELETALLMSDAGVDATEYL 132 Query: 67 VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 + L K R + Q+V + +L+ ++L PL K + +P V+++ GVNG GKT Sbjct: 133 LGALREKVRVGRLTDPQQVKAALHDLLVELLQPLEKSLMLGRA-QPLVMMITGVNGAGKT 191 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K + V+LAAGDTFR+AA +QL +W +R + V E G D AA+ ++A Sbjct: 192 TSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDA 250 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+A+K+DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNA Sbjct: 251 VSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNA 310 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QV+ F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF A + Sbjct: 311 LTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFNAVE 370 Query: 306 FSAVITG 312 F+ + G Sbjct: 371 FADALLG 377 >gi|313667376|ref|YP_004047660.1| regulatory protein PilA [Neisseria lactamica ST-640] gi|313004838|emb|CBN86263.1| regulatory protein PilA [Neisseria lactamica 020-06] Length = 502 Score = 226 bits (575), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 124/303 (40%), Positives = 183/303 (60%), Gaps = 14/303 (4%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW +L +G + K+ + + + ++D+ + EELE +LI D+G+ E Sbjct: 201 LSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITGDMGMEAT-----EY 255 Query: 71 LTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 L K VS+ + L D +EL ++ ++ PL KP + P VI++ G+NG G Sbjct: 256 LMKDVRNRVSL-KGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGINGAG 314 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+K G V+LAAGDTFR+AA +QL+ W +R + + G D+AA+ + Sbjct: 315 KTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTG-DSAAVCF 373 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A + A+A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQ Sbjct: 374 DAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQ 433 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NA+ QV+ F G TGLI+TK+DGTA+GG L + IPV ++GVGEGI+DL PF A Sbjct: 434 NAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPIPVRYIGVGEGIDDLRPFDA 493 Query: 304 KDF 306 + F Sbjct: 494 RAF 496 >gi|134279674|ref|ZP_01766386.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 305] gi|134248874|gb|EBA48956.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 305] Length = 476 Score = 226 bits (575), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 130/302 (43%), Positives = 185/302 (61%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + ++ L Sbjct: 181 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGALR 236 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ ++L PL K + +P V+++ GVNG GKTT IGK Sbjct: 237 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 295 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 296 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 354 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 355 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 414 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ + Sbjct: 415 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 474 Query: 311 TG 312 G Sbjct: 475 LG 476 >gi|325129220|gb|EGC52060.1| signal recognition particle-docking protein FtsY [Neisseria meningitidis OX99.30304] Length = 421 Score = 225 bits (574), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 118/297 (39%), Positives = 184/297 (61%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G + K+ + + + ++D+ + EELE +LI SD+G+ + +++++ Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 180 RNRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ ++A + A Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415 >gi|325108508|ref|YP_004269576.1| signal recognition particle-docking protein FtsY [Planctomyces brasiliensis DSM 5305] gi|324968776|gb|ADY59554.1| signal recognition particle-docking protein FtsY [Planctomyces brasiliensis DSM 5305] Length = 313 Score = 225 bits (574), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 132/307 (42%), Positives = 181/307 (58%), Gaps = 14/307 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +L KG T+ L + D+ + L+D + E LI SD+GVA + +IVEEL K Sbjct: 6 RLKKGLQKTAKVLNTDVRDLFRAGEILNDEHLAQFERRLIESDMGVAASMEIVEELRKKH 65 Query: 75 YAKDVSVQRVLYDVSELIHKMLM-----------PLSKPFNWDFSHRPHVILVVGVNGVG 123 + V V+ + V +H++L PL+ P N P VILV GVNGVG Sbjct: 66 RGRTVVVEEIWATVQAKLHELLQGNENVEYDTENPLA-PLNM-AEEGPTVILVAGVNGVG 123 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT I KL+ + AG KV+LAAGDTFR+AA++QL +W+ R D V E GSD AA+AY Sbjct: 124 KTTSIAKLANLLHKAGKKVVLAAGDTFRAAAVEQLTMWSQRIGCDIVTKESGSDPAAVAY 183 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 ++A DV+IIDTAGRL LM + K+ RV+ + P PH L VLDATTGQ Sbjct: 184 AGCERAVETGADVVIIDTAGRLQTQKNLMQELEKIYRVIGKKIPGGPHESLLVLDATTGQ 243 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 N + Q E+F + TGL++ K+DGTA+GG ++ I IPV ++GVGE I+DL+ F Sbjct: 244 NGIIQAEVFSGIIDATGLVLAKLDGTAKGGVVVAIRQKMGIPVKYVGVGEQIDDLQVFNP 303 Query: 304 KDFSAVI 310 + F+A + Sbjct: 304 EQFAAAL 310 >gi|113866393|ref|YP_724882.1| signal recognition particle receptor FtsY [Ralstonia eutropha H16] gi|113525169|emb|CAJ91514.1| signal recognition particle receptor FtsY [Ralstonia eutropha H16] Length = 386 Score = 225 bits (574), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 127/309 (41%), Positives = 184/309 (59%), Gaps = 7/309 (2%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 + A L W+ +L G + TS I + ++D+ + EELE L+ +D GV + Sbjct: 84 QTAEAKLGWMHRLRTGLSKTS----RNIGTLFVGVKVDEALFEELETALLMADAGVEATE 139 Query: 65 KIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 ++ EL + A+ + + + V + EL+ ++L PL K +P V+++ GVNG G Sbjct: 140 YLLGELRKRVKAERIETAEGVKAALRELLTQLLRPLEKTMALG-REQPLVMMIAGVNGAG 198 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL K KV+LAAGDTFR+AA +QL IW +R + V E G D AA+ + Sbjct: 199 KTTSIGKLCKHFQRYDQKVLLAAGDTFRAAAREQLTIWGERNNVTVVAQESG-DPAAVIF 257 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A A+A+ +D+++ DTAGRL LM + K+ RV+ + P APH VL V+DA TGQ Sbjct: 258 DAVNAAKARGIDIVMADTAGRLPTQLHLMEELKKVKRVISKAMPSAPHEVLLVIDANTGQ 317 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NAL+Q F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF A Sbjct: 318 NALQQTRAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFKA 377 Query: 304 KDFSAVITG 312 +F+ + G Sbjct: 378 DEFAEALLG 386 >gi|237654272|ref|YP_002890586.1| signal recognition particle-docking protein FtsY [Thauera sp. MZ1T] gi|237625519|gb|ACR02209.1| signal recognition particle-docking protein FtsY [Thauera sp. MZ1T] Length = 461 Score = 225 bits (574), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 131/300 (43%), Positives = 187/300 (62%), Gaps = 11/300 (3%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW +L G A T ++ G+ + R++D+ + EELE L+ +D GV Q ++++L Sbjct: 148 SWTERLKAGLARTRNQIGGGLASLFGLRKIDEDLLEELESTLLMADCGVDATQHLIDDL- 206 Query: 72 TKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 +R+ +D +Q+ L D +H+++ PL P HRP +I++ GVNG GKTT Sbjct: 207 RRRWKRDRLETADQLQKALADG---LHEIIAPLEAPLEV-AGHRPFIIMIAGVNGSGKTT 262 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+K G V+LAAGDTFR+AA +QL W +R + V + G DAAA+ ++A Sbjct: 263 SIGKLAKYFQAHGKSVLLAAGDTFRAAAREQLMTWGERNNVTVVAQDSG-DAAAVIFDAI 321 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A+A+K+DV++ DTAGRL LM I K+ RV+ + DP PH VL VLDA GQNAL Sbjct: 322 NAARARKIDVVLADTAGRLPTQLHLMEEIAKVRRVIAKADPSGPHEVLLVLDANIGQNAL 381 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QV+ F G TGL++TK+DGTA+GG L I P+ F+GVGEGI+DL+PF A++F Sbjct: 382 AQVKAFDKAIGVTGLVVTKLDGTAKGGVLAAIARQCPKPLRFIGVGEGIDDLQPFKAREF 441 >gi|167040352|ref|YP_001663337.1| signal recognition particle-docking protein FtsY [Thermoanaerobacter sp. X514] gi|300914436|ref|ZP_07131752.1| signal recognition particle-docking protein FtsY [Thermoanaerobacter sp. X561] gi|307724328|ref|YP_003904079.1| signal recognition particle-docking protein FtsY [Thermoanaerobacter sp. X513] gi|166854592|gb|ABY93001.1| signal recognition particle-docking protein FtsY [Thermoanaerobacter sp. X514] gi|300889371|gb|EFK84517.1| signal recognition particle-docking protein FtsY [Thermoanaerobacter sp. X561] gi|307581389|gb|ADN54788.1| signal recognition particle-docking protein FtsY [Thermoanaerobacter sp. X513] Length = 319 Score = 225 bits (574), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 131/314 (41%), Positives = 198/314 (63%), Gaps = 17/314 (5%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVA 63 + A E + +K+ +G T L I I++ R++D+ + EELE++LI +DIG++ Sbjct: 13 ETAEEKKGFFQKIKEGLLKTRENLTSKIDSIVTIGRKIDEELLEELEEILILADIGISTT 72 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILV 116 KI+E + K + +R +YD S++ ++++L +PF P VIL Sbjct: 73 SKIIEGIRQK------AKERKIYDASQIKELLAEEVYEILQKDVEPFTL---TSPMVILN 123 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGKL+ G KVMLAAGDTFR+AAIDQL+IWA+R + + + GS Sbjct: 124 VGVNGVGKTTTIGKLAYLYKKEGKKVMLAAGDTFRAAAIDQLEIWAERVNCPIIKHQEGS 183 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D A++ ++ + ++A+ +D+LI DTAGRLHN LM + K+ +V+ R P A V Sbjct: 184 DPASVIFDGIQASKARGIDILICDTAGRLHNKKNLMEELRKIRKVIDREYPEARVETFLV 243 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDATTGQNAL+Q ++F V+ TG+++TK+DGTA+GG ++ I +P+ ++G+GEGI Sbjct: 244 LDATTGQNALQQAKIFKEVSDITGIVLTKLDGTAKGGIVVAIKSELNVPIRYIGIGEGIE 303 Query: 297 DLEPFVAKDFSAVI 310 DL+ F AK F + I Sbjct: 304 DLQAFDAKSFVSAI 317 >gi|255065474|ref|ZP_05317329.1| signal recognition particle-docking protein FtsY [Neisseria sicca ATCC 29256] gi|255050299|gb|EET45763.1| signal recognition particle-docking protein FtsY [Neisseria sicca ATCC 29256] Length = 480 Score = 225 bits (574), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 117/297 (39%), Positives = 183/297 (61%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G + K+ + + + ++D+ + EELE +LI SD+G+ + +++++ Sbjct: 179 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 238 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 239 RNRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPDTKEPFVIMLAGINGAGKTTSIG 298 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W +R + + G D+AA+ ++A + A Sbjct: 299 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTG-DSAAVCFDAVQAA 357 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 358 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 417 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F Sbjct: 418 KAFDEALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 474 >gi|326389505|ref|ZP_08211072.1| signal recognition particle-docking protein FtsY [Thermoanaerobacter ethanolicus JW 200] gi|325994510|gb|EGD52935.1| signal recognition particle-docking protein FtsY [Thermoanaerobacter ethanolicus JW 200] Length = 318 Score = 225 bits (574), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 130/311 (41%), Positives = 198/311 (63%), Gaps = 17/311 (5%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKI 66 +E + +K+ +G T L I I++ R++D+ + EELE++LI +DIG++ KI Sbjct: 15 AEKKGFFQKIKEGLLKTRENLTSKIDSIVTIGRKIDEELLEELEEILILADIGISTTSKI 74 Query: 67 VEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +E + K + +R +YD S++ ++++L +PF P VIL VGV Sbjct: 75 IEGIRQK------AKERKIYDASQIKELLAEEVYEILQKDVEPFTL---TSPMVILNVGV 125 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+ G KVMLAAGDTFR+AAIDQL+IWA+R + + + GSD A Sbjct: 126 NGVGKTTTIGKLAYLYKKEGKKVMLAAGDTFRAAAIDQLEIWAERVNCPIIKHQEGSDPA 185 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++ + ++A+++D+LI DTAGRLHN LM + K+ +V+ R P A VLDA Sbjct: 186 SVIFDGIQASKAREIDILICDTAGRLHNKKNLMEELRKIRKVIDREYPEARVETFLVLDA 245 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNAL+Q ++F V+ TG+++TK+DGTA+GG ++ I +P+ ++G+GEGI DL+ Sbjct: 246 TTGQNALQQAKIFKEVSDITGIVLTKLDGTAKGGIVVAIKSELNVPIRYIGIGEGIEDLQ 305 Query: 300 PFVAKDFSAVI 310 F AK F + I Sbjct: 306 AFDAKSFVSAI 316 >gi|254469043|ref|ZP_05082449.1| signal recognition particle-docking protein FtsY [beta proteobacterium KB13] gi|207087853|gb|EDZ65136.1| signal recognition particle-docking protein FtsY [beta proteobacterium KB13] Length = 384 Score = 225 bits (574), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 122/302 (40%), Positives = 190/302 (62%), Gaps = 7/302 (2%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 E LS+ K+ +G T + ++ + ++ +D +ELE LI +D+G A Q+I+ Sbjct: 82 EKLSFSEKIKQGLKKTRDAISGNLSALSFTKNIDQEFYDELEMTLIAADVGYAATQQIIS 141 Query: 69 EL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 EL + K +D + + L + +++ ++L + KP P VILVVGVNG GKT Sbjct: 142 ELKDRVKKEKLEDGAQLKSL--LKKILSELLQHIEKPL-IHIETTPFVILVVGVNGAGKT 198 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K + D G V++AAGDTFR+AA +QL++W DR + + + G D +A+ ++A Sbjct: 199 TTIGKLTKLLLDEGKSVLIAAGDTFRAAAKEQLQVWGDRNNVTVISQDTG-DPSAVIFDA 257 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + A+AK +D++I DTAGRL L+ + K+ +V+K+ D APH + VLDA TGQNA Sbjct: 258 MQSAKAKAIDIVIADTAGRLPTQKHLIDELAKIKKVIKKFDETAPHETILVLDANTGQNA 317 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + Q+++F+ TGLIMTK+DGTA+GG + I IP+ F+GVGE I+DL+ F A+D Sbjct: 318 INQIKVFNEAVSLTGLIMTKLDGTAKGGIVAAIAKEQPIPLRFIGVGEKIDDLKIFSAED 377 Query: 306 FS 307 ++ Sbjct: 378 YA 379 >gi|116690829|ref|YP_836452.1| signal recognition particle-docking protein FtsY [Burkholderia cenocepacia HI2424] gi|116648918|gb|ABK09559.1| signal recognition particle-docking protein FtsY [Burkholderia cenocepacia HI2424] Length = 388 Score = 225 bits (573), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 130/307 (42%), Positives = 186/307 (60%), Gaps = 7/307 (2%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 AS SW+ +L G A T IT + + ++D+ + EELE L+ SD GV + + Sbjct: 88 ASAKKSWLARLKTGLAKTG----SSITGVFVNTKIDEDLYEELETALLMSDAGVDATEYL 143 Query: 67 VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 ++ L K R + Q+V + +L+ ++L PL K + P V+++ GVNG GKT Sbjct: 144 LDALREKVRAGRLTDPQQVKDALHDLLVELLTPLEKSLMLGRAQ-PLVMMIAGVNGAGKT 202 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K + V+LAAGDTFR+AA +QL +W +R + V E G D AA+ ++A Sbjct: 203 TSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDA 261 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+A+K+DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNA Sbjct: 262 VSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNA 321 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QV+ F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF A + Sbjct: 322 LTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVE 381 Query: 306 FSAVITG 312 F+ + G Sbjct: 382 FADALLG 388 >gi|170734154|ref|YP_001766101.1| signal recognition particle-docking protein FtsY [Burkholderia cenocepacia MC0-3] gi|169817396|gb|ACA91979.1| signal recognition particle-docking protein FtsY [Burkholderia cenocepacia MC0-3] Length = 388 Score = 225 bits (573), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 130/307 (42%), Positives = 187/307 (60%), Gaps = 7/307 (2%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 AS SW+ +L G A T IT + + ++D+ + EELE L+ SD GV + + Sbjct: 88 ASAKKSWLARLKTGLAKTG----SSITGVFVNTKIDEDLYEELETALLMSDAGVDATEYL 143 Query: 67 VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 ++ L K R + Q+V + +L+ ++L PL K + +P V+++ GVNG GKT Sbjct: 144 LDALREKVRAGRLTDPQQVKDALHDLLVELLTPLEKSLMLGRA-QPLVMMITGVNGAGKT 202 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K + V+LAAGDTFR+AA +QL +W +R + V E G D AA+ ++A Sbjct: 203 TSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDA 261 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+A+K+DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNA Sbjct: 262 VSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNA 321 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QV+ F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF A + Sbjct: 322 LTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVE 381 Query: 306 FSAVITG 312 F+ + G Sbjct: 382 FADALLG 388 >gi|91204843|ref|YP_537198.1| Signal recognition particle-docking protein FtsY [Rickettsia bellii RML369-C] gi|157826414|ref|YP_001495478.1| Signal recognition particle-docking protein FtsY [Rickettsia bellii OSU 85-389] gi|122426142|sp|Q1RKK5|FTSY_RICBR RecName: Full=Cell division protein ftsY homolog gi|91068387|gb|ABE04109.1| Signal recognition particle-docking protein FtsY [Rickettsia bellii RML369-C] gi|157801718|gb|ABV78441.1| Signal recognition particle-docking protein FtsY [Rickettsia bellii OSU 85-389] Length = 303 Score = 225 bits (573), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 127/303 (41%), Positives = 191/303 (63%), Gaps = 3/303 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 +S KL +G + TS K+ GI I ++LD EELE+LLI +D+G VA KI+E+ Sbjct: 2 ISIFSKLKQGLSKTSGKISAGIDKIFYKKKLDAETLEELEELLISTDMGSLVAAKIIEDF 61 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + ++ K+V + ++ LI + L+ PF + ++ +V+LV GVNG GKTT IGK Sbjct: 62 KSLKFDKEVETTEIKETLANLIEQQLLESEIPFTLN-ENKLNVVLVCGVNGAGKTTTIGK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ G KV +AA DTFR+AA++QL W R A + E +D A++AY A +++ Sbjct: 121 LAAMYGMQGKKVAVAACDTFRAAAVNQLDSWVTRAKALLITGEEAADPASVAYRAVEESI 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249 + +D+L IDTAGRLHN LM + K+++V+K++D + P HSVL V+DA TGQN QV Sbjct: 181 KQDIDILFIDTAGRLHNKKNLMDELTKIVKVIKKVDENLPTHSVL-VIDAITGQNTYNQV 239 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F+ TGLI+TK+DG+A+ G ++ +V +P+YF+G+GE I DL+ F DF+ Sbjct: 240 EHFNDATNLTGLIVTKLDGSAKAGVIVGVVQRFNLPIYFIGIGEQIEDLKIFNRHDFAKS 299 Query: 310 ITG 312 + G Sbjct: 300 LVG 302 >gi|107023742|ref|YP_622069.1| signal recognition particle-docking protein FtsY [Burkholderia cenocepacia AU 1054] gi|105893931|gb|ABF77096.1| signal recognition particle-docking protein FtsY [Burkholderia cenocepacia AU 1054] Length = 327 Score = 225 bits (573), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 130/307 (42%), Positives = 187/307 (60%), Gaps = 7/307 (2%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 AS SW+ +L G A T IT + + ++D+ + EELE L+ SD GV + + Sbjct: 27 ASAKKSWLARLKTGLAKTG----SSITGVFVNTKIDEDLYEELETALLMSDAGVDATEYL 82 Query: 67 VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 ++ L K R + Q+V + +L+ ++L PL K + +P V+++ GVNG GKT Sbjct: 83 LDALREKVRAGRLTDPQQVKDALHDLLVELLTPLEKSLMLGRA-QPLVMMIAGVNGAGKT 141 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K + V+LAAGDTFR+AA +QL +W +R + V E G D AA+ ++A Sbjct: 142 TSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDA 200 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+A+K+DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNA Sbjct: 201 VSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNA 260 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QV+ F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF A + Sbjct: 261 LTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVE 320 Query: 306 FSAVITG 312 F+ + G Sbjct: 321 FADALLG 327 >gi|71082964|ref|YP_265683.1| cell division particle [Candidatus Pelagibacter ubique HTCC1062] gi|91762612|ref|ZP_01264577.1| cell division particle [Candidatus Pelagibacter ubique HTCC1002] gi|71062077|gb|AAZ21080.1| cell division particle [Candidatus Pelagibacter ubique HTCC1062] gi|91718414|gb|EAS85064.1| cell division particle [Candidatus Pelagibacter ubique HTCC1002] Length = 305 Score = 225 bits (573), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 120/300 (40%), Positives = 189/300 (63%), Gaps = 7/300 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 K GF ++ G+ DII + +DD +++E+ LI+SD+G+ A++I + + ++ Sbjct: 6 KFKIGFKKSASTFTSGLRDIIVKKEIDDKTLDQIEEYLIQSDVGLVAAEEIKKIIAQEKI 65 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPF-NWDFSHRP---HVILVVGVNGVGKTTVIGKL 131 + ++++V+ ++ ++ L KP N +F ++ + +LV GVNGVGKTT IGK+ Sbjct: 66 DPK---KDIMHEVNLILRNYIVTLMKPLENENFFNKKEKLNAVLVSGVNGVGKTTTIGKV 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 K + G KVM +A DTFR+AAI+QL+ WA++ S GSD A++AY+A ++A Sbjct: 123 GKILKSNGNKVMFSACDTFRAAAIEQLESWANKIDVQITKSTQGSDPASVAYKAIEEALK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + ++IDTAGRL N LM K+ V K++DP APH V+ VLDAT+GQN + QVE Sbjct: 183 NDFNHVLIDTAGRLQNKKNLMEEYKKIAHVTKKIDPDAPHDVILVLDATSGQNVISQVEE 242 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ + TGLIMTK+DGTA+GG L+ + +K+P+ LG+GE +DL+ F A+ F+ T Sbjct: 243 FNKIIPLTGLIMTKLDGTAKGGILLALAKKYKLPIIALGLGEKEDDLQIFNAEKFAEAFT 302 >gi|301062995|ref|ZP_07203560.1| signal recognition particle-docking protein FtsY [delta proteobacterium NaphS2] gi|300442876|gb|EFK07076.1| signal recognition particle-docking protein FtsY [delta proteobacterium NaphS2] Length = 353 Score = 225 bits (573), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 190/311 (61%), Gaps = 6/311 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62 KV + ++L G T I ++ + ++ + + + +ELE++L SDIGVA Sbjct: 42 NKVDNNEEGVFKRLRHGLTKTRSSFTGRIDNLFAGKKEITESLMDELEEILFTSDIGVAT 101 Query: 63 AQKIVE---ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 Q++++ E +T++ +D Q++ + + I +L S + P VI+V GV Sbjct: 102 TQRLLDAARENVTRKALRDP--QKLKAILRDHIFSLLNQDSVEHTPSNAEGPLVIMVAGV 159 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGK++ + G VML A DTFR+AA++QL IW +R A V + G+D + Sbjct: 160 NGVGKTTSIGKIANRFRREGKTVMLVAADTFRAAAVEQLTIWGERVGATVVKQDTGADPS 219 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+A++A A ++K+DV+++DTAGRLH + LMA + K+ RV+ R P APH V VLDA Sbjct: 220 AVAFDAMTAAISRKIDVVLVDTAGRLHTQTNLMAELRKVNRVIGRKLPGAPHEVWLVLDA 279 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNA+ Q E F G TG+I+TK+DGTA+GG +I I +IP+ F+G+GE ++DL Sbjct: 280 TTGQNAISQAEAFQKALGLTGIILTKLDGTAKGGVVIGISSEFQIPIRFIGIGEQVDDLR 339 Query: 300 PFVAKDFSAVI 310 PF +F I Sbjct: 340 PFDPGEFVRAI 350 >gi|225076774|ref|ZP_03719973.1| hypothetical protein NEIFLAOT_01825 [Neisseria flavescens NRL30031/H210] gi|224951872|gb|EEG33081.1| hypothetical protein NEIFLAOT_01825 [Neisseria flavescens NRL30031/H210] Length = 419 Score = 225 bits (573), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 118/297 (39%), Positives = 183/297 (61%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G + K+ + + + ++D+ + EELE +LI D+G+ + +++++ Sbjct: 118 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITGDMGMEATEYLMKDV 177 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 178 RNRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 237 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ ++A + A Sbjct: 238 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 296 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 297 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 356 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF AK F Sbjct: 357 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRSVPVRYIGVGEGIDDLRPFNAKAF 413 >gi|326335726|ref|ZP_08201912.1| cell division protein FtsY [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692155|gb|EGD34108.1| cell division protein FtsY [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 317 Score = 225 bits (573), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 120/277 (43%), Positives = 171/277 (61%), Gaps = 5/277 (1%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA-KDVSVQRVLYDVSELIH 93 I ++DD + +ELE +L+ SD+GV KI++ + + Y K + + + E I Sbjct: 35 IAGKSKVDDTILDELEGILVSSDVGVDTTLKIIDRIEKRVYQEKYLGTNELNKILREEIA 94 Query: 94 KMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 +L + DFS +P+VI+VVGVNG GKTT IGKL+ ++ GL ++L A DT Sbjct: 95 ALLSETQRGEEVDFSIPTGKKPYVIMVVGVNGAGKTTTIGKLAYQLKKKGLNIVLGAADT 154 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+AAIDQL++WADR V + GSD A++AY+ A ++ DV+IIDTAGRLHN Sbjct: 155 FRAAAIDQLQVWADRVGVPLVKQQTGSDPASVAYDTLSSALSQNADVVIIDTAGRLHNKV 214 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 LM + K+ RV+++L P+ P VL VLD +TGQNA Q + F L +TK+DGT Sbjct: 215 NLMNELSKVKRVMQKLLPNTPDEVLLVLDGSTGQNAFEQAKQFTLATEVNALAITKLDGT 274 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 A+GG +I I +IPV ++GVGEGI DL+ F +F Sbjct: 275 AKGGVVIGISDQFQIPVKYIGVGEGIEDLQVFNKYEF 311 >gi|317153561|ref|YP_004121609.1| signal recognition particle-docking protein FtsY [Desulfovibrio aespoeensis Aspo-2] gi|316943812|gb|ADU62863.1| signal recognition particle-docking protein FtsY [Desulfovibrio aespoeensis Aspo-2] Length = 457 Score = 225 bits (573), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 122/297 (41%), Positives = 190/297 (63%), Gaps = 5/297 (1%) Query: 16 KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 KL+ G A T ++ + I ++S+ L+D +E E++LI +D+G+ A ++++ L K Sbjct: 162 KLSDGIAKTREQITKRIDGLLSAHSSLNDDFWDEFEEILIMADVGMEAAGQLMDNL--KA 219 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 A+ D E++ + L + + P + + P V+++VGVNGVGKTT I KL+ Sbjct: 220 RARKAGTDDP-EDFKEILRQELEEIFRLPPRIEAVNPPEVLMMVGVNGVGKTTTIAKLAY 278 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 + G KV++AAGDTFR+AAI+QL++WA R A F GSD AA+AYEA +A ++ Sbjct: 279 RAQLQGRKVLIAAGDTFRAAAIEQLEVWAGRIGAGFFAKAEGSDPAAVAYEAMDKAVSEG 338 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 D+L++DTAGRLH LM + K+ RVL + P APH + V+DATTGQNAL Q ++F+ Sbjct: 339 YDLLLLDTAGRLHTKVNLMEELKKVQRVLGKKHPGAPHRCILVIDATTGQNALAQTKLFN 398 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 G +I+TK+DGTA+GG ++ + + +K+P+ F+G+GE + DL PF KDF+ + Sbjct: 399 EAVGLDEIILTKLDGTAKGGVVVAVTLQNKLPITFVGLGEKMEDLRPFNGKDFAKAL 455 >gi|237749579|ref|ZP_04580059.1| signal recognition particle receptor [Oxalobacter formigenes OXCC13] gi|229380941|gb|EEO31032.1| signal recognition particle receptor [Oxalobacter formigenes OXCC13] Length = 351 Score = 225 bits (573), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 123/300 (41%), Positives = 182/300 (60%), Gaps = 8/300 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW+ +L G A TS L +I +D+ + EELE L+ SD+G+ + +++EL Sbjct: 57 SWLSRLKSGLAKTSANL-----NIFGGTTIDEELFEELETALLVSDVGMPATEYLLDEL- 110 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGK 130 ++ ++ Q + + N + H P VI++ GVNG GKTT IGK Sbjct: 111 RRKVKEEKLTQPSEIKTALAALLTDLLAPLQKNLEIGRHNPLVIMMAGVNGAGKTTTIGK 170 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L++ + + V+LAAGDTFR+AA +QL +W DR + E G D AA+A++A + A+ Sbjct: 171 LAQHLQNNDQTVLLAAGDTFRAAAREQLAVWGDRNKITVIAQESG-DPAAVAFDAVQSAK 229 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 AK ++V+++DTAGRL S LM + K+ RV+ + APH ++ V+D TGQNAL QV+ Sbjct: 230 AKNINVVMVDTAGRLPTQSHLMEELKKVKRVIGKGMDEAPHEIILVIDGNTGQNALAQVK 289 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGT +GG L I H +PVYF+GVGE I+DL+PFVA++FS + Sbjct: 290 AFDETLGLTGLIVTKLDGTPKGGILAAIAKNHPVPVYFIGVGEKIDDLQPFVAEEFSNAL 349 >gi|261379167|ref|ZP_05983740.1| signal recognition particle-docking protein FtsY [Neisseria cinerea ATCC 14685] gi|269144353|gb|EEZ70771.1| signal recognition particle-docking protein FtsY [Neisseria cinerea ATCC 14685] Length = 347 Score = 225 bits (573), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 121/303 (39%), Positives = 187/303 (61%), Gaps = 14/303 (4%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW +L +G + K+ + + + ++D+ + EELE +LI SD+G+ + +++++ Sbjct: 46 LSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 105 Query: 71 LTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 +D + L D +EL ++ ++ PL KP + P VI++ G+NG G Sbjct: 106 ------RDRVSLKGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGINGAG 159 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ + Sbjct: 160 KTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNV-TVISQTTGDSAAVCF 218 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A + A+A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQ Sbjct: 219 DAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQ 278 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NA+ QV+ F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A Sbjct: 279 NAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDA 338 Query: 304 KDF 306 + F Sbjct: 339 RAF 341 >gi|261401832|ref|ZP_05987957.1| signal recognition particle-docking protein FtsY [Neisseria lactamica ATCC 23970] gi|269208010|gb|EEZ74465.1| signal recognition particle-docking protein FtsY [Neisseria lactamica ATCC 23970] Length = 409 Score = 225 bits (573), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 119/297 (40%), Positives = 184/297 (61%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW +L +G + K+ + + + ++D+ + EELE +LI D+G+ + +++++ Sbjct: 108 LSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITGDMGMEATEYLMKDV 167 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 168 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 227 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ ++A + A Sbjct: 228 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNV-TVISQTTGDSAAVCFDAVQAA 286 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 287 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 346 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + IPV ++GVGEGI+DL PF A+ F Sbjct: 347 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPIPVRYIGVGEGIDDLRPFDARAF 403 >gi|218767303|ref|YP_002341815.1| probable signal recognition particle protein [Neisseria meningitidis Z2491] gi|9910688|sp|P57010|FTSY_NEIMA RecName: Full=Cell division protein ftsY homolog gi|121051311|emb|CAM07596.1| probable signal recognition particle protein [Neisseria meningitidis Z2491] Length = 421 Score = 225 bits (573), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 118/297 (39%), Positives = 184/297 (61%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G + K+ + + + ++D+ + EELE +LI SD+G+ + +++++ Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ ++A + A Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415 >gi|254247170|ref|ZP_04940491.1| Signal recognition particle GTPase [Burkholderia cenocepacia PC184] gi|124871946|gb|EAY63662.1| Signal recognition particle GTPase [Burkholderia cenocepacia PC184] Length = 413 Score = 224 bits (572), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 130/307 (42%), Positives = 186/307 (60%), Gaps = 7/307 (2%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 AS SW+ +L G A T IT + + ++D+ + EELE L+ SD GV + + Sbjct: 113 ASAKKSWLARLKTGLAKTG----SSITGVFVNTKIDEDLYEELETALLMSDAGVDATEYL 168 Query: 67 VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 ++ L K R + Q+V + +L+ ++L PL K + P V+++ GVNG GKT Sbjct: 169 LDALREKVRAGRLTDPQQVKDALHDLLVELLTPLEKSLMLGRAQ-PLVMMITGVNGAGKT 227 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K + V+LAAGDTFR+AA +QL +W +R + V E G D AA+ ++A Sbjct: 228 TSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDA 286 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+A+K+DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNA Sbjct: 287 VSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNA 346 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QV+ F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF A + Sbjct: 347 LTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVE 406 Query: 306 FSAVITG 312 F+ + G Sbjct: 407 FADALLG 413 >gi|167753009|ref|ZP_02425136.1| hypothetical protein ALIPUT_01273 [Alistipes putredinis DSM 17216] gi|167659323|gb|EDS03453.1| hypothetical protein ALIPUT_01273 [Alistipes putredinis DSM 17216] Length = 365 Score = 224 bits (572), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 125/305 (40%), Positives = 186/305 (60%), Gaps = 8/305 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73 +L G T L + ++ R +D V ++LE++LI SD+GV KI+E + + Sbjct: 59 ELNSGLEKTKTGLFSKLARAVAGRSTIDTQVLDDLEEVLITSDVGVETTVKIIERIEARV 118 Query: 74 ---RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVI 128 +Y +Q +L D +++L+ + ++ F D P+VI+VVGVNG GKTT I Sbjct: 119 ARDKYMNTSELQSILRDEIAQLMEESHRS-TENFGLDVEEGVPYVIMVVGVNGAGKTTTI 177 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ +++ AGL V + A DTFR+AAIDQL +WA+R A + E+GSD A++A++ K Sbjct: 178 GKLAAQLTRAGLNVYIGAADTFRAAAIDQLAVWAERAGATMIRQEMGSDPASVAFDTLKS 237 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A A K DV++IDTAGRLHN LM + K+ V+ ++ P+AP V+ VLD +TGQNA Q Sbjct: 238 AVANKADVVLIDTAGRLHNKVGLMNELTKIRNVMGKVIPNAPQEVMLVLDGSTGQNAFEQ 297 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 F T L +TK+DGTA+GG +I I +IPV ++G+GEGI+ L+ F K+F Sbjct: 298 ARQFTQATQVTSLTITKLDGTAKGGVVIGISDQFRIPVRYIGIGEGIDQLKMFDRKEFVN 357 Query: 309 VITGC 313 + G Sbjct: 358 ALFGS 362 >gi|161869063|ref|YP_001598229.1| signal recognition particle protein [Neisseria meningitidis 053442] gi|161594616|gb|ABX72276.1| signal recognition particle protein [Neisseria meningitidis 053442] Length = 421 Score = 224 bits (572), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 118/297 (39%), Positives = 184/297 (61%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G + K+ + + + ++D+ + EELE +LI SD+G+ + +++++ Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ ++A + A Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415 >gi|329122028|ref|ZP_08250637.1| cell division protein FtsY [Dialister micraerophilus DSM 19965] gi|327467080|gb|EGF12592.1| cell division protein FtsY [Dialister micraerophilus DSM 19965] Length = 313 Score = 224 bits (572), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 125/298 (41%), Positives = 193/298 (64%), Gaps = 5/298 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +S+ ++ KG T L + I I I +D+ ++LE +L+ D+GV ++ + Sbjct: 1 MSFFDRIKKGLEKTKKGLIQNIESIVIGYAHIDEEFLDDLEMILVSGDLGVRTTDYLMRQ 60 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHK-MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + +R K+ ++ +V I K M+ L++ + +H P V L+VGVNGVGKTT I Sbjct: 61 I--RRGVKEGNISNT-SEVMPFIEKTMIELLTENDEKEENHVPEVYLIVGVNGVGKTTTI 117 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ +MS AG KV+LAAGDT+R+AA +QL IWA+RT +D V G+D AA+A++A Sbjct: 118 GKLAYQMSKAGKKVLLAAGDTYRAAASEQLTIWAERTGSDIVKHAEGADPAAVAFDALTA 177 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +DV+++DTAGR+ + LM +GK+ +V+K++ P APH L VLDATTGQNA+ Q Sbjct: 178 AKARNIDVVLVDTAGRIQTKTNLMNELGKINKVMKKVIPDAPHQTLLVLDATTGQNAVSQ 237 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F V TG+++TK+DGTA+GG ++ I K+PV ++G+GE +DL+ F A F Sbjct: 238 AKHFKEVVDITGIVLTKLDGTAKGGVVLSIHEELKVPVKWIGLGEREDDLQKFDASVF 295 >gi|238028676|ref|YP_002912907.1| Signal recognition particle-docking protein FtsY [Burkholderia glumae BGR1] gi|237877870|gb|ACR30203.1| Signal recognition particle-docking protein FtsY [Burkholderia glumae BGR1] Length = 389 Score = 224 bits (572), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 132/302 (43%), Positives = 185/302 (61%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SWI +L G + TS L T++ + R+DD + EELE L+ SD G+ + ++ L Sbjct: 94 SWIARLRSGLSKTSTSL----TNVFVNTRIDDELYEELEAALLMSDAGIDATEYLLGALR 149 Query: 72 TKRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K A+ +S +V + L+ +L PL K + P V+++ GVNG GKTT IGK Sbjct: 150 EKVRAERLSDPLQVKAALRALLVDLLAPLEKSLMLGRAQ-PLVMMIAGVNGAGKTTSIGK 208 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 209 LAKHLQRFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVGAAR 267 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+K+DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 268 ARKIDVVMADTAGRLPTQLHLMEELRKVKRVIGKAQSDAPHEVLLVIDANTGQNALAQVK 327 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+GVGE + DL+PF A++F+ + Sbjct: 328 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFNAEEFADAL 387 Query: 311 TG 312 G Sbjct: 388 LG 389 >gi|254449085|ref|ZP_05062537.1| signal recognition particle-docking protein FtsY [gamma proteobacterium HTCC5015] gi|198261277|gb|EDY85570.1| signal recognition particle-docking protein FtsY [gamma proteobacterium HTCC5015] Length = 325 Score = 224 bits (572), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 130/309 (42%), Positives = 185/309 (59%), Gaps = 8/309 (2%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVA 61 N+ + E L +G T L I D++ S+R++DD V EE+E L+ +D+GV Sbjct: 7 NEALQDEQQDQTSGLMRGLRKTRDILTADIRDLVASTRQIDDDVMEEIETRLLMADVGVE 66 Query: 62 VAQKIVEEL---LTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117 + +++ + + DV S+ R L D EL+ K L + D HRP IL+V Sbjct: 67 TTRSVIDAVNRGIEVGQVSDVTSLIRALRD--ELVAK-LTRYTHRLEIDSKHRPTSILMV 123 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 GVNG GKTT GKL+K+ G VMLAAGDTFR+AA++QL+ W R + + G+D Sbjct: 124 GVNGAGKTTTTGKLAKRFQRQGYGVMLAAGDTFRAAAVEQLEEWGRRNHVEVLGQGTGAD 183 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 +A+++++A A+A+ DVLI DTAGRLH LM + K+ RV+K++D AP L V+ Sbjct: 184 SASVSFDALSAAKARGTDVLIADTAGRLHTQGGLMDELTKIKRVMKKVDESAPTETLLVV 243 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DAT GQNAL Q FH TGLI+TK+DGTA+GG + I +P+ F+GVGE I+D Sbjct: 244 DATQGQNALNQAREFHRAIDLTGLIVTKLDGTAKGGIIFAISHELGLPIRFIGVGESIDD 303 Query: 298 LEPFVAKDF 306 L+ F K+F Sbjct: 304 LKEFKPKEF 312 >gi|325129203|gb|EGC52048.1| signal recognition particle-docking protein FtsY [Neisseria meningitidis N1568] Length = 421 Score = 224 bits (572), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 118/297 (39%), Positives = 184/297 (61%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G + K+ + + + ++D+ + EELE +LI SD+G+ + +++++ Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ ++A + A Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415 >gi|308388268|gb|ADO30588.1| probable signal recognition particle protein [Neisseria meningitidis alpha710] gi|319409567|emb|CBY89858.1| cell division protein FtsY [Neisseria meningitidis WUE 2594] gi|325133204|gb|EGC55874.1| signal recognition particle-docking protein FtsY [Neisseria meningitidis M6190] Length = 421 Score = 224 bits (572), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 118/297 (39%), Positives = 184/297 (61%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G + K+ + + + ++D+ + EELE +LI SD+G+ + +++++ Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ ++A + A Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415 >gi|297183609|gb|ADI19736.1| hypothetical protein [uncultured bacterium EB000_36F02] Length = 305 Score = 224 bits (572), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 120/297 (40%), Positives = 185/297 (62%), Gaps = 7/297 (2%) Query: 15 RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K GF ++ G+ DII+ + +DD ++ED LI SD+GV A I + + ++ Sbjct: 5 EKFKLGFKKSASTFTSGLKDIITKKEIDDKTLSKVEDYLIYSDVGVEAATDIKDIIAQEK 64 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPF-NWDFSH---RPHVILVVGVNGVGKTTVIGK 130 + + ++ +++ ++ ++ L KP N +F + + +V+L+ GVNGVGKTT IGK Sbjct: 65 INPN---KNIMEEINVILKNYIVSLMKPLENENFFYNKEKLNVVLISGVNGVGKTTTIGK 121 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 + K + G KVM +A DTFR+AAI+QL+ WA + V S GSD A++AY+A +QA Sbjct: 122 IGKILKSNGNKVMFSACDTFRAAAIEQLENWATKIDVQIVKSTQGSDPASVAYKAVEQAI 181 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + ++IDTAGRL N LM K+ V K++DP APH V+ +LDAT+GQN + QVE Sbjct: 182 QNNFNHVLIDTAGRLQNKKNLMDEYKKIAHVTKKIDPDAPHDVILILDATSGQNVINQVE 241 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 F+ + TGLIMTK+D TA+GG LI + +K+P+ +G+GE +DL+ F A+ F+ Sbjct: 242 EFNKIIPITGLIMTKLDSTAKGGILIALARKYKLPIIAVGLGEKEDDLQIFSAEKFA 298 >gi|88608763|ref|YP_506428.1| signal recognition particle-docking protein FtsY [Neorickettsia sennetsu str. Miyayama] gi|88600932|gb|ABD46400.1| signal recognition particle-docking protein FtsY [Neorickettsia sennetsu str. Miyayama] Length = 309 Score = 224 bits (572), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 121/280 (43%), Positives = 177/280 (63%), Gaps = 2/280 (0%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87 L GI +I + ++ + E+LE+LLI +DIG V ++I++ + + S+++V Sbjct: 20 LSSGIDNIFAKEKISESTIEQLEELLISADIGPTVTERIIKTVKKIKVKDGESLEQVKSI 79 Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 E + K+L P SK + + P VI+ GVNG GKTT IGKL+ K VM+AA Sbjct: 80 TREEMKKVLDPTSKKLIFPQTG-PQVIVFCGVNGNGKTTTIGKLAYKFIQENKTVMIAAC 138 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 D FR+AAI+QL+ WA+R SA F SE +A+ AY+A ++A KVDVLI+DT+GRLH Sbjct: 139 DLFRAAAIEQLRFWAERASATFFSSETSKNASGTAYKALEKALEDKVDVLIVDTSGRLHT 198 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + LM + K+ RVL +L P AP+ V+ LDA+TGQNAL QV++F TGL++TK+D Sbjct: 199 QNDLMEELKKICRVLSKLMPSAPNEVILALDASTGQNALNQVQVFKDAVNLTGLVVTKLD 258 Query: 268 GTARGGGLIPIVVTH-KIPVYFLGVGEGINDLEPFVAKDF 306 GT++GG ++ I + + +YF+G GE I DLE F +F Sbjct: 259 GTSKGGVIVAIAERYPNLGIYFVGTGEKITDLEEFSPSEF 298 >gi|304388845|ref|ZP_07370899.1| cell division protein FtsY [Neisseria meningitidis ATCC 13091] gi|304337211|gb|EFM03391.1| cell division protein FtsY [Neisseria meningitidis ATCC 13091] gi|325137247|gb|EGC59841.1| signal recognition particle-docking protein FtsY [Neisseria meningitidis M0579] gi|325143381|gb|EGC65711.1| signal recognition particle-docking protein FtsY [Neisseria meningitidis 961-5945] gi|325201235|gb|ADY96689.1| signal recognition particle-docking protein FtsY [Neisseria meningitidis M01-240149] gi|325205143|gb|ADZ00596.1| signal recognition particle-docking protein FtsY [Neisseria meningitidis M04-240196] Length = 421 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 118/297 (39%), Positives = 184/297 (61%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G + K+ + + + ++D+ + EELE +LI SD+G+ + +++++ Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ ++A + A Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415 >gi|160947508|ref|ZP_02094675.1| hypothetical protein PEPMIC_01442 [Parvimonas micra ATCC 33270] gi|158446642|gb|EDP23637.1| hypothetical protein PEPMIC_01442 [Parvimonas micra ATCC 33270] Length = 326 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 128/304 (42%), Positives = 187/304 (61%), Gaps = 7/304 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 S+ +L KG +T L I +++S S ++D+ + EELE +L+ +DIG V +++++L Sbjct: 23 SFFERLKKGLVNTRNNLSSKIDNLLSMSTKIDEELFEELEYILVSADIGANVTMELIDDL 82 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPL-SKPFNWDFS---HRPHVILVVGVNGVGKTT 126 + ++ ++ D +LI M L SK N DF+ P +ILVVGVNGVGKTT Sbjct: 83 KEIVKKEKITEPSLIKD--KLIELMNSKLASKELNHDFNIIDGIPTIILVVGVNGVGKTT 140 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+ K G VML A DTFR+AA +QL WA+R+ + +E G+D A++ Y+ Sbjct: 141 SIGKLANKFKSKGKNVMLVAADTFRAAATEQLTEWANRSGVPIISNEEGADPASVVYDGI 200 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A++K +DVLI DTAGRLHN LM + K+ RV+ R P A V VLDATTGQNA+ Sbjct: 201 QSAKSKNIDVLICDTAGRLHNKKNLMNELNKIARVIDREYPEANKEVTLVLDATTGQNAI 260 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q + F A +I+TK+DGTA+GG + I + +IPV +G+GE I+DL+ + +DF Sbjct: 261 VQAKEFRDTANIDSVILTKLDGTAKGGVVFTIQLEMEIPVKQIGIGEQIDDLQDYNDEDF 320 Query: 307 SAVI 310 I Sbjct: 321 VNAI 324 >gi|325290418|ref|YP_004266599.1| signal recognition particle-docking protein FtsY [Syntrophobotulus glycolicus DSM 8271] gi|324965819|gb|ADY56598.1| signal recognition particle-docking protein FtsY [Syntrophobotulus glycolicus DSM 8271] Length = 309 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 115/261 (44%), Positives = 171/261 (65%), Gaps = 3/261 (1%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-P 111 LI+SD+G++ + ++VE L K + ++ +L +V L ++ L + + Sbjct: 45 LIQSDVGISTSMELVENLRKKVKERKIADPLLLNEV--LKENIVELLGEKIELKLNDSGT 102 Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 V LVVGVNGVGKTT +GKL++ + G V+LAAGDTFR+AAI+QL+ W R D + Sbjct: 103 TVYLVVGVNGVGKTTTLGKLARHFRNEGKSVLLAAGDTFRAAAIEQLEAWGQRAGVDVIK 162 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 G+D AA+ ++A + A+A+K D+L++DTAGRLHN LM + KM RV++R P APH Sbjct: 163 QSEGADPAAVTFDALQAAKARKTDILLVDTAGRLHNKVNLMKELTKMKRVVEREIPSAPH 222 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 VL +LDATTGQNA++QV +F A TG+I+TK+DGTA+GG ++ I ++PV +G+ Sbjct: 223 EVLLILDATTGQNAIQQVRIFQEAAEVTGIILTKLDGTAKGGVILGIQGEARVPVKMIGI 282 Query: 292 GEGINDLEPFVAKDFSAVITG 312 GEG+ DL+PF F+ + G Sbjct: 283 GEGLEDLKPFEPDQFAEALFG 303 >gi|254671754|emb|CBA09584.1| cell division protein [Neisseria meningitidis alpha153] Length = 421 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 118/297 (39%), Positives = 184/297 (61%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G + K+ + + + ++D+ + EELE +LI SD+G+ + +++++ Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ ++A + A Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPDAPHEIIVVLDANIGQNAVNQV 358 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415 >gi|270158016|ref|ZP_06186673.1| cell division protein FtsY [Legionella longbeachae D-4968] gi|289163717|ref|YP_003453855.1| Cell division protein FtsY homolog [Legionella longbeachae NSW150] gi|269990041|gb|EEZ96295.1| cell division protein FtsY [Legionella longbeachae D-4968] gi|288856890|emb|CBJ10701.1| Cell division protein FtsY homolog [Legionella longbeachae NSW150] Length = 350 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 126/300 (42%), Positives = 182/300 (60%), Gaps = 9/300 (3%) Query: 13 WIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + + K + T +L +GI ++ + + + +ELE LLI +D+G+ Q ++ +L Sbjct: 45 FFARFRKSLSKTRHQLGDGIGRLLLGKKEISQELLDELETLLISADLGIETTQAVLNQLT 104 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-----HRPHVILVVGVNGVGKTT 126 K +S +Y E + L + K N + H P VIL+VGVNG GKTT Sbjct: 105 EGLARKQLSDGNAVY---EALKSYLQGILKQKNQSLTLETADHSPFVILMVGVNGAGKTT 161 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+K+ G KVMLAAGDTFR+AA++QL +W +R + G+D+A++ ++A Sbjct: 162 TIGKLAKQFQQQGKKVMLAAGDTFRAAAVEQLLVWGERNDIPVIAQHTGADSASVIFDAL 221 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+A+K+DVLI DTAGRLH S LM + K+ RVL++L P APH + +LDA+ GQNAL Sbjct: 222 QAAKARKMDVLIADTAGRLHTQSNLMEELKKVKRVLQKLSPDAPHETMLILDASIGQNAL 281 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q F+ G TG+ MTK+DGTA+GG L I IP ++G+GEGI DL+PF A F Sbjct: 282 VQARQFNEAIGLTGVTMTKLDGTAKGGILFAIANELGIPFRYIGIGEGIEDLQPFDAAQF 341 >gi|261856138|ref|YP_003263421.1| signal recognition particle-docking protein FtsY [Halothiobacillus neapolitanus c2] gi|261836607|gb|ACX96374.1| signal recognition particle-docking protein FtsY [Halothiobacillus neapolitanus c2] Length = 391 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 121/279 (43%), Positives = 178/279 (63%), Gaps = 3/279 (1%) Query: 30 EGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD- 87 EG+ D+ + + +DD + EE+E LI +D+G A + +++ L + K ++ L++ Sbjct: 104 EGLGDLFLGKKAIDDELLEEVETRLIMADVGQATTRALIDALHQQISRKQINDTEALFET 163 Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 +S+L+ + L + KP + +PH+I+V G+NG GKTT IGKL+ +G KVMLAAG Sbjct: 164 LSQLMIERLERVQKPRPAP-TEQPHIIVVCGINGAGKTTTIGKLAHHYKQSGHKVMLAAG 222 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DTFR+AA++QL W +R + D+A++ ++A + A+A+ +DVLI DTAGRLH Sbjct: 223 DTFRAAAVEQLITWGERNQIPVIGEPGRQDSASVLFDAAQSARARNMDVLIADTAGRLHT 282 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 LM + K+IRV+ + P APH +L VLDA+ GQNAL Q FH G TGLI+TK+D Sbjct: 283 QGGLMDELKKLIRVVSKSIPGAPHEILLVLDASIGQNALNQARQFHEAVGVTGLIVTKLD 342 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 GTA+GG L I K+P+ F+GVGE I DL PF K + Sbjct: 343 GTAKGGILFAIADELKLPIDFIGVGEQIADLRPFDPKGY 381 >gi|212639593|ref|YP_002316113.1| signal recognition particle GTPase [Anoxybacillus flavithermus WK1] gi|212561073|gb|ACJ34128.1| Signal recognition particle GTPase [Anoxybacillus flavithermus WK1] Length = 332 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 131/309 (42%), Positives = 195/309 (63%), Gaps = 8/309 (2%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K+A ++ + K +G T + D+I+ R++D+ EELE++LI SD+GVA Sbjct: 9 EKIAKQADTVTEKFKRGLEKTRDSFAGKVNDLIARYRKVDEEFFEELEEILIASDVGVAT 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPH---VILVV 117 ++EL + +++ + +Y V +LI + S + + +P+ VIL V Sbjct: 69 VMDFIDELKMEVKRRNIQDPKEMYSVISEKLID--IYEASGEEKTELNIQPNGLTVILFV 126 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 GVNGVGKTT IGKL+ K+ G KVMLAAGDTFR+ AI+QL++W +R + + GSD Sbjct: 127 GVNGVGKTTTIGKLAYKLKSEGKKVMLAAGDTFRAGAIEQLEVWGERVGVEVIKQSAGSD 186 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 AA+ Y+A + A+++ VD+L+ DTAGRL N LM + K+ RV++R P APH VL VL Sbjct: 187 PAAVMYDAIQAAKSRNVDILLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVL 246 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DATTGQNA+ Q + F TG+++TK+DGTA+GG ++ I IPV F+G+GE ++D Sbjct: 247 DATTGQNAMSQAKTFKEATNVTGIVLTKLDGTAKGGIVLAIRHELNIPVKFVGLGEKMDD 306 Query: 298 LEPFVAKDF 306 LEPF A+ F Sbjct: 307 LEPFNAEQF 315 >gi|15675985|ref|NP_273111.1| signal recognition particle protein [Neisseria meningitidis MC58] gi|9910689|sp|P57011|FTSY_NEIMB RecName: Full=Cell division protein ftsY homolog gi|7225266|gb|AAF40516.1| signal recognition particle protein [Neisseria meningitidis MC58] gi|316983616|gb|EFV62598.1| signal recognition particle-docking protein FtsY [Neisseria meningitidis H44/76] gi|325199276|gb|ADY94731.1| signal recognition particle-docking protein FtsY [Neisseria meningitidis H44/76] Length = 421 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 118/297 (39%), Positives = 184/297 (61%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G + K+ + + + ++D+ + EELE +LI SD+G+ + +++++ Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ ++A + A Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415 >gi|121633921|ref|YP_974166.1| signal recognition particle protein [Neisseria meningitidis FAM18] gi|120865627|emb|CAM09347.1| probable signal recognition particle protein [Neisseria meningitidis FAM18] gi|325139277|gb|EGC61821.1| signal recognition particle-docking protein FtsY [Neisseria meningitidis ES14902] Length = 421 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 118/297 (39%), Positives = 184/297 (61%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G + K+ + + + ++D+ + EELE +LI SD+G+ + +++++ Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ ++A + A Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415 >gi|325207096|gb|ADZ02548.1| signal recognition particle-docking protein FtsY [Neisseria meningitidis NZ-05/33] Length = 421 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 118/297 (39%), Positives = 184/297 (61%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G + K+ + + + ++D+ + EELE +LI SD+G+ + +++++ Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ ++A + A Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415 >gi|120601367|ref|YP_965767.1| signal recognition particle-docking protein FtsY [Desulfovibrio vulgaris DP4] gi|120561596|gb|ABM27340.1| signal recognition particle-docking protein FtsY [Desulfovibrio vulgaris DP4] Length = 483 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 123/301 (40%), Positives = 188/301 (62%), Gaps = 7/301 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73 KLT+G A T ++ I +++S R+D+G EELE++LI +D+G +++ L + Sbjct: 181 KLTEGLARTREQIGRRIDGLLASHGRIDEGFWEELEEILIMADVGFEPTTQLIGRLRERA 240 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 R A R EL+ + L + + P + P V+L++GVNGVGKTT I KL+ Sbjct: 241 RKAGTDDPARF----RELLREELEVIFRAPRRIAAVNPPEVVLLIGVNGVGKTTTIAKLA 296 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 + G KV++AAGDTFR+AAI+QL+IWA R A F G+D AA+AYEA +A ++ Sbjct: 297 YRAQLQGRKVLIAAGDTFRAAAIEQLEIWAKRVGAGFYAKTAGADPAAVAYEAMDKAVSE 356 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 D+L++DTAGRLH + LM + K+ +VL R P APH + V+DATTGQNAL Q ++F Sbjct: 357 GYDLLLVDTAGRLHTKANLMEELHKIRKVLGRKHPGAPHRSILVIDATTGQNALSQTKLF 416 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + G +++TK+DGTA+GG ++ + + IP+ ++G+GE + D+ PF DF+ + G Sbjct: 417 NEACGVDEIVLTKLDGTAKGGIVVAVAMQFGIPITYVGLGEKMEDMRPFNGSDFAMALLG 476 Query: 313 C 313 Sbjct: 477 V 477 >gi|307264842|ref|ZP_07546404.1| signal recognition particle-docking protein FtsY [Thermoanaerobacter wiegelii Rt8.B1] gi|306920100|gb|EFN50312.1| signal recognition particle-docking protein FtsY [Thermoanaerobacter wiegelii Rt8.B1] Length = 318 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 130/311 (41%), Positives = 198/311 (63%), Gaps = 17/311 (5%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKI 66 +E + +K+ +G T L I I++ R++D+ + EELE++LI +DIG++ KI Sbjct: 15 AEKKGFFQKIKEGLLKTRENLTSKIDSIVTIGRKIDEELLEELEEILILADIGISTTSKI 74 Query: 67 VEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +E + K + +R +YD S++ ++++L +PF P VILVVGV Sbjct: 75 IEGIRQK------AKERKIYDASQIKKLLAEEVYEILQKDVEPFTL---TSPMVILVVGV 125 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+ G KV+LAAGDTFR+AAIDQL+IWA+R + + + GSD A Sbjct: 126 NGVGKTTTIGKLAYLYKKEGKKVILAAGDTFRAAAIDQLEIWAERVNCPIIKHQEGSDPA 185 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++ + ++A+ +D+LI DTAGRLHN LM + K+ +V+ R P A VLDA Sbjct: 186 SVIFDGIQASKARGIDILICDTAGRLHNKKNLMEELRKIRKVIDREYPEARVETFLVLDA 245 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNAL+Q ++F V+ TG+++TK+DGTA+GG ++ I +P+ ++G+GEGI DL+ Sbjct: 246 TTGQNALQQAKIFKEVSDITGIVLTKLDGTAKGGIVVAIKSELNVPIRYIGIGEGIEDLQ 305 Query: 300 PFVAKDFSAVI 310 F AK F + I Sbjct: 306 AFDAKSFVSAI 316 >gi|117923933|ref|YP_864550.1| signal recognition particle-docking protein FtsY [Magnetococcus sp. MC-1] gi|117607689|gb|ABK43144.1| signal recognition particle-docking protein FtsY [Magnetococcus sp. MC-1] Length = 304 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 133/304 (43%), Positives = 192/304 (63%), Gaps = 16/304 (5%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 +++ KL K A T + II+ LD V EELE+LLI SD GV A I+ E Sbjct: 1 MAFFDKLRKSLAKTRESFTHTLETIITGNALDVDVLEELEELLITSDFGVQAAHNIIAET 60 Query: 71 LTKRYAKDV-----SVQRVLYDV-SELI--HKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 +R+ ++ V+++L V ++ + H + L P PH +++VGVNGV Sbjct: 61 -KERFPREAPEGNHKVKKMLKIVIADRLRRHHAALQLVTP-------GPHALMMVGVNGV 112 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKLS + GL ++LAAGDTFR+AA++QL+IW +RT + +DAA++ Sbjct: 113 GKTTTIGKLSAYYKEQGLDLLLAAGDTFRAAAVEQLQIWGERTQTPVIAQGQNADAASVI 172 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A+ A + VD+LI DTAGRLH + LM + K++RV+K+L+ APH + VLDATTG Sbjct: 173 YDAYAAAHKRGVDLLIADTAGRLHTKTNLMEELKKVLRVIKKLESTAPHDIWLVLDATTG 232 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ QV++FH G TGLI+TK+DGTA+GG ++ I +P+ F+GVGEG+ DL PF Sbjct: 233 QNAINQVKIFHEALGLTGLIITKLDGTAKGGVVVGICEQFNLPIRFIGVGEGVEDLRPFD 292 Query: 303 AKDF 306 ++F Sbjct: 293 PQEF 296 >gi|261415969|ref|YP_003249652.1| signal recognition particle-docking protein FtsY [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372425|gb|ACX75170.1| signal recognition particle-docking protein FtsY [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325501|gb|ADL24702.1| signal recognition particle-docking protein FtsY [Fibrobacter succinogenes subsp. succinogenes S85] Length = 306 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 123/290 (42%), Positives = 187/290 (64%), Gaps = 3/290 (1%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 + G A T L + I+ + ++ D EELE+ LI++D+GV A + + L Sbjct: 7 IKSGLAKTRDALLGELKGIVGAGKITDETLEELEEHLIKADVGVEAAFLLTDALRENALG 66 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136 K ++ ++VL D+ + L+ PF + +PHV+LV+GVNG GKTT IGKL+ ++ Sbjct: 67 KSLTTEQVL-DIMRNEAERLLKDPPPF--ELKGKPHVVLVIGVNGAGKTTTIGKLAARLK 123 Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196 + G KVM+AA DTFR+AAIDQL+ WA R+ A+FV + GSD AA+AY+A A A+ DV Sbjct: 124 NEGKKVMIAACDTFRAAAIDQLETWAQRSGAEFVKHQEGSDPAAVAYDACSAAVARGCDV 183 Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256 ++IDTAGRLHN LM + K++RV+K++ P PH + V+D TGQN + Q ++F+ Sbjct: 184 VLIDTAGRLHNKDYLMEELKKIVRVIKKVSPDMPHDMWLVIDGNTGQNTINQTKIFNQSF 243 Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TGL++TK+DGTARGG ++ I + +IP+ ++G+GE I+ L F +D+ Sbjct: 244 PLTGLVVTKLDGTARGGSVLSIASSLQIPIRWVGMGERIDQLVEFNKRDY 293 >gi|261391594|emb|CAX49032.1| cell division protein FtsY [Neisseria meningitidis 8013] Length = 421 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 118/297 (39%), Positives = 184/297 (61%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G + K+ + + + ++D+ + EELE +LI SD+G+ + +++++ Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ ++A + A Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415 >gi|46581462|ref|YP_012270.1| signal recognition particle-docking protein FtsY [Desulfovibrio vulgaris str. Hildenborough] gi|46450884|gb|AAS97530.1| signal recognition particle-docking protein FtsY [Desulfovibrio vulgaris str. Hildenborough] gi|311235115|gb|ADP87969.1| signal recognition particle-docking protein FtsY [Desulfovibrio vulgaris RCH1] Length = 488 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 123/301 (40%), Positives = 188/301 (62%), Gaps = 7/301 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73 KLT+G A T ++ I +++S R+D+G EELE++LI +D+G +++ L + Sbjct: 186 KLTEGLARTREQIGRRIDGLLASHGRIDEGFWEELEEILIMADVGFEPTTQLIGRLRERA 245 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 R A R EL+ + L + + P + P V+L++GVNGVGKTT I KL+ Sbjct: 246 RKAGTDDPARF----RELLREELEVIFRAPRRIAAVNPPEVVLLIGVNGVGKTTTIAKLA 301 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 + G KV++AAGDTFR+AAI+QL+IWA R A F G+D AA+AYEA +A ++ Sbjct: 302 YRAQLQGRKVLIAAGDTFRAAAIEQLEIWAKRVGAGFYAKTAGADPAAVAYEAMDKAVSE 361 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 D+L++DTAGRLH + LM + K+ +VL R P APH + V+DATTGQNAL Q ++F Sbjct: 362 GYDLLLVDTAGRLHTKANLMEELHKIRKVLGRKHPGAPHRSILVIDATTGQNALSQTKLF 421 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + G +++TK+DGTA+GG ++ + + IP+ ++G+GE + D+ PF DF+ + G Sbjct: 422 NEACGVDEIVLTKLDGTAKGGIVVAVAMQFGIPITYVGLGEKMEDMRPFNGSDFAMALLG 481 Query: 313 C 313 Sbjct: 482 V 482 >gi|282878891|ref|ZP_06287655.1| signal recognition particle-docking protein FtsY [Prevotella buccalis ATCC 35310] gi|281298890|gb|EFA91295.1| signal recognition particle-docking protein FtsY [Prevotella buccalis ATCC 35310] Length = 319 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 121/273 (44%), Positives = 178/273 (65%), Gaps = 7/273 (2%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLM 97 ++DD V + LE++L+ SD+GV KI+E + +R A+D VS + + + I +L Sbjct: 39 KVDDEVLDNLEEVLVTSDVGVGTTLKIIERI-EQRVARDKYVSTAELNSILRDEIAALLA 97 Query: 98 PLSKP--FNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 + NWD H+P+VILVVGVNGVGKTT IGKL+ + +G KV L A DT+R+A Sbjct: 98 ENNTEDHENWDLPADHQPYVILVVGVNGVGKTTTIGKLAYQFKASGKKVFLGAADTYRAA 157 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A+DQ+KIW +R V ++G+D A++A++ + A+A DV++IDTAGRLHN LM Sbjct: 158 AVDQIKIWGERVGVPVVSQQMGADPASVAFDTLQSAKANGADVVLIDTAGRLHNKVGLMN 217 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + K+ V+K++ P AP VL VLD +TGQNA Q + F AV T L +TK+DGTA+GG Sbjct: 218 ELKKIKDVMKKVLPQAPDEVLLVLDGSTGQNAFEQAKQFSAVTQITSLAITKLDGTAKGG 277 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +I I K+PV ++G+GE ++DL+ F ++F Sbjct: 278 VVIGISDQLKVPVKYIGLGEQMDDLQLFNRREF 310 >gi|167585413|ref|ZP_02377801.1| Cell division transporter substrate-binding protein FtsY [Burkholderia ubonensis Bu] Length = 345 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 130/302 (43%), Positives = 184/302 (60%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW+ +L G A TS IT + S ++D+ + EELE L+ SD GV + +++ L Sbjct: 50 SWLARLKSGLAKTS----SSITGVFVSTKIDEDLYEELETALLMSDAGVDATEYLLDALR 105 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + +L+ +L PL K + +P V+++ GVNG GKTT IGK Sbjct: 106 EKVRTGRLTDPQQVKAALHDLLVDLLKPLEKSLMLGRA-QPLVMMIAGVNGAGKTTSIGK 164 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 165 LAKHLQSFDQSVLLAAGDTFRAAAREQLTIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 223 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 224 ARGIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTGQNALTQVK 283 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF A +F+ + Sbjct: 284 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVEFADAL 343 Query: 311 TG 312 G Sbjct: 344 LG 345 >gi|222056675|ref|YP_002539037.1| signal recognition particle-docking protein FtsY [Geobacter sp. FRC-32] gi|221565964|gb|ACM21936.1| signal recognition particle-docking protein FtsY [Geobacter sp. FRC-32] Length = 342 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 126/295 (42%), Positives = 186/295 (63%), Gaps = 18/295 (6%) Query: 27 KLKEGITD------------IISSRRLDDGVREELEDLLIRSDIGVAVAQKIV---EELL 71 +LK+G+T ++ +++D V EELE++LI +DIGV +++ E+ L Sbjct: 46 RLKQGLTKTHESIVGRIDSLLLGQKQIDADVLEELEEILITADIGVKTTVELIRTLEQRL 105 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + KD + + + + I L+ + + + +P VILV+GVNGVGKTT IGKL Sbjct: 106 KRNELKDGNALKAA--LKQEITNRLVQVESGLDI-IAAKPFVILVIGVNGVGKTTTIGKL 162 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + AG KV+LAAGDTFR+AA +QL+IW +R A+ V + G+D +A+A++A K A A Sbjct: 163 AAQYRLAGKKVLLAAGDTFRAAAAEQLEIWGERVGAEVVRHKEGADPSAVAFDACKAALA 222 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + DVL+IDTAGRLH LM + K+ RV++R P APH L VLDA TGQNA+ Q + Sbjct: 223 RGCDVLLIDTAGRLHTKVNLMEEMKKIRRVIEREIPGAPHETLLVLDAATGQNAISQASL 282 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F A TGLI+TK+DGTA+GG ++ + +PV ++GVGEG+ DL F ++F Sbjct: 283 FKEAAQVTGLILTKLDGTAKGGIVVAVSHEFSLPVRYIGVGEGVEDLREFEPQEF 337 >gi|78067608|ref|YP_370377.1| signal recognition particle-docking protein FtsY [Burkholderia sp. 383] gi|77968353|gb|ABB09733.1| signal recognition particle-docking protein FtsY [Burkholderia sp. 383] Length = 388 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 131/310 (42%), Positives = 187/310 (60%), Gaps = 13/310 (4%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 AS SW+ +L G A T IT + + ++D+ + EELE L+ SD GV + + Sbjct: 88 ASAKKSWLARLKTGLAKTG----SSITGVFVNTKIDEDLYEELETALLMSDAGVDATEYL 143 Query: 67 V----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + E++ T R V+ L+D L+ ++L PL K + +P V+++ GVNG Sbjct: 144 LGALREKVRTGRLTDPQQVKSALHD---LLVELLTPLEKSLMLGRA-QPLVMMITGVNGA 199 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K + V+LAAGDTFR+AA +QL +W +R + V E G D AA+ Sbjct: 200 GKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVI 258 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A A+A+K+DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TG Sbjct: 259 FDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTG 318 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL QV+ F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF Sbjct: 319 QNALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFS 378 Query: 303 AKDFSAVITG 312 A +F+ + G Sbjct: 379 AVEFADALLG 388 >gi|119897057|ref|YP_932270.1| signal recognition particle-docing protein FtsY [Azoarcus sp. BH72] gi|119669470|emb|CAL93383.1| probable signal recognition particle-docing protein FtsY [Azoarcus sp. BH72] Length = 377 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 126/298 (42%), Positives = 191/298 (64%), Gaps = 5/298 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW +L G A T +L G+ ++ R++D+ + EELE L+ +D GV Q +++EL Sbjct: 63 LSWGERLKAGLARTRQQLGGGLANLFGRRKIDEDLLEELETTLLMADCGVDATQYLLDEL 122 Query: 71 LTKRYAKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 R+ +D + ++ +++ +HK++ PL +P + H+P++I++ GVNG GKTT I Sbjct: 123 RL-RWKRDRLETADQLQAALADALHKIIAPLEQPLDVS-GHKPYIIMIAGVNGSGKTTSI 180 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+K G V+LAAGDTFR+AA +QL W +R + + + G DAAA+ ++A Sbjct: 181 GKLAKYFQAQGKSVLLAAGDTFRAAAREQLMTWGERNNVTVIAQD-GGDAAAVIFDAINA 239 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +D+++ DTAGRL LM I K+ RV+ + D PH V+ VLDA GQNAL Q Sbjct: 240 ARARGIDIVLADTAGRLPTQLHLMEEIAKVRRVIAKADASGPHEVVLVLDANIGQNALAQ 299 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 V+ F A G TGL++TK+DGTA+GG + I P+ F+GVGEGI+DL+PF A++F Sbjct: 300 VKAFDAAIGVTGLVVTKLDGTAKGGVVAAIARQCPKPLRFIGVGEGIDDLQPFKAREF 357 >gi|313673049|ref|YP_004051160.1| signal recognition particle-docking protein ftsy [Calditerrivibrio nitroreducens DSM 19672] gi|312939805|gb|ADR18997.1| signal recognition particle-docking protein FtsY [Calditerrivibrio nitroreducens DSM 19672] Length = 325 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 140/311 (45%), Positives = 198/311 (63%), Gaps = 12/311 (3%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGV 60 ++++ + ++ +L +G + TS KL GI II R+ +DD + EELE+L I +DIGV Sbjct: 12 NDEQREEDEKGFLNRLKEGLSKTSSKLVGGIEAIILGRKKIDDDLLEELEELFITADIGV 71 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-----PHVIL 115 KI+E + DVS + +L D EL + + L K + D S + P VIL Sbjct: 72 NTTIKIIE-----KVKNDVS-RNILKDPVELKNAIKDELIKILSIDNSLKKVDTSPFVIL 125 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VVGVNG GKTT I KL++ + G V+LAAGDTFR+AAIDQL++W DR V G Sbjct: 126 VVGVNGTGKTTTIAKLARMFKNNGFSVLLAAGDTFRAAAIDQLQVWGDRIGVPVVKQSEG 185 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD+AA+ Y+A + A+A+ D++I DTAGRLHN LM + K+++VL + APH VL Sbjct: 186 SDSAAVIYDAVESAKARGNDIVIADTAGRLHNKFNLMNELKKIVKVLGKSVVDAPHEVLL 245 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DAT+GQNA+ Q + F G TG+++TK+DGTA+GG ++ IV IPV F+G GE + Sbjct: 246 VIDATSGQNAIEQAKRFKEDVGVTGIVLTKLDGTAKGGVIVGIVDETGIPVKFIGFGEKM 305 Query: 296 NDLEPFVAKDF 306 +DL+PF AK F Sbjct: 306 DDLKPFDAKLF 316 >gi|167568708|ref|ZP_02361582.1| signal recognition particle-docking protein FtsY [Burkholderia oklahomensis C6786] Length = 366 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 129/302 (42%), Positives = 183/302 (60%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW+ +L G A TS IT++ + ++D+ + EELE L+ SD GV + +++ L Sbjct: 71 SWLARLKSGLAKTS----SSITNVFVNTKIDEALYEELETALLMSDAGVDATEHLLDALR 126 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ +L PL K + P V+++ GVNG GKTT IGK Sbjct: 127 EKVRTGRLTDPQQVKDALRGLLVDLLKPLEKSLMLGRAQ-PLVMMIAGVNGAGKTTSIGK 185 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 186 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 244 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQN L QV+ Sbjct: 245 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNGLAQVK 304 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+GVGE + DL+PF A++F+ + Sbjct: 305 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFADAL 364 Query: 311 TG 312 G Sbjct: 365 LG 366 >gi|327398967|ref|YP_004339836.1| signal recognition particle-docking protein FtsY [Hippea maritima DSM 10411] gi|327181596|gb|AEA33777.1| signal recognition particle-docking protein FtsY [Hippea maritima DSM 10411] Length = 303 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 125/299 (41%), Positives = 182/299 (60%), Gaps = 18/299 (6%) Query: 19 KGFASTSLKLKEGITDII-SSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELL-- 71 KG A K K+G T+ I + D+ + +E +E+LLI SD GV KI++ + Sbjct: 5 KGIADKLFKTKQGFTEKIHEESKKDEPITDEYLDFIEELLIESDFGVKTTMKIMDAINEG 64 Query: 72 ----TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 + R +DV ++ + E+I +L + KP + H+ VILVVG+NG GKTT Sbjct: 65 IDSGSIRTRQDVEIK-----IREVILSILKQVEKPL--EIKHKKFVILVVGINGSGKTTT 117 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ +D G KVML A DTFR+AAI+QL+ WA R SA V G+D AA+A++ Sbjct: 118 IGKLASLNTDKGKKVMLVAADTFRAAAIEQLEEWAKRASASIVKQNEGADPAAVAFDGVS 177 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ DV+ +DTAGRLH LM + K+ + +++ P APH VL VLDAT GQNA+ Sbjct: 178 SGIARNYDVIFVDTAGRLHTQKNLMNEVIKIKKAVQKAYPEAPHEVLLVLDATIGQNAIN 237 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q F+ +G+++TKMDGTA+GG ++ I KIP+ ++G+GE ++DL+ F A+DF Sbjct: 238 QAREFNKALAISGIVLTKMDGTAKGGIIVAISEEFKIPIRYIGIGESLDDLKAFNARDF 296 >gi|261368256|ref|ZP_05981139.1| signal recognition particle-docking protein FtsY [Subdoligranulum variabile DSM 15176] gi|282569771|gb|EFB75306.1| signal recognition particle-docking protein FtsY [Subdoligranulum variabile DSM 15176] Length = 321 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 125/309 (40%), Positives = 188/309 (60%), Gaps = 8/309 (2%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 + ++ + +K+ +G T + I + +++ ++DD + +LE+ LI +D+G Sbjct: 4 FKKRNISEKEFEEQQKMQRGLEKTRTGFFQNILNTLTNCQIDDDLYNDLEEQLILADVGP 63 Query: 61 AVAQKIVEEL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117 A A ++V+EL + K + K + + L + +I + L P + + P VILV+ Sbjct: 64 ACAVRLVDELRDEVEKNHLK--TGEEALDALRGIICQELTPR---YPLELDGHPAVILVI 118 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 GVNGVGKTT I KL+ + G +VMLAAGDTFR+AA +QL++WADR V + G+D Sbjct: 119 GVNGVGKTTTIAKLAHLYKEEGRRVMLAAGDTFRAAASEQLELWADRAGVPLVQAGQGAD 178 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 AA+ ++A K A AK D++I DTAGRLHN LM +GK+ R +K+ P A VL VL Sbjct: 179 PAAVIFDAVKSATAKGYDMVIADTAGRLHNKKGLMDELGKISRSVKKASPEASLEVLLVL 238 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA TGQNA+ Q E F AG TG+++TK+DGT +GG + + +P+ F+GVGE I+D Sbjct: 239 DAITGQNAISQAEEFCRAAGATGVVLTKLDGTPKGGCAVSVWENLGLPIRFVGVGEKIDD 298 Query: 298 LEPFVAKDF 306 L PF A+ F Sbjct: 299 LMPFDAQTF 307 >gi|313891634|ref|ZP_07825241.1| signal recognition particle-docking protein FtsY [Dialister microaerophilus UPII 345-E] gi|313119912|gb|EFR43097.1| signal recognition particle-docking protein FtsY [Dialister microaerophilus UPII 345-E] Length = 313 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 125/298 (41%), Positives = 192/298 (64%), Gaps = 5/298 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +S+ ++ KG T L + I I I +D+ + LE +L+ D+GV ++ + Sbjct: 1 MSFFDRIKKGLEKTKKGLIQNIESIVIGYAHIDEEFLDNLEMILVSGDLGVRTTDYLMRQ 60 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHK-MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + +R K+ ++ +V I K M+ L++ + +H P V L+VGVNGVGKTT I Sbjct: 61 I--RRGVKEGNISNT-SEVMPFIEKTMIELLTENDEKEENHVPEVYLIVGVNGVGKTTTI 117 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ +MS AG KV+LAAGDT+R+AA +QL IWA+RT +D V G+D AA+A++A Sbjct: 118 GKLAYQMSKAGKKVLLAAGDTYRAAASEQLTIWAERTGSDIVKHAEGADPAAVAFDALTA 177 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +DV+++DTAGR+ + LM +GK+ +V+K++ P APH L VLDATTGQNA+ Q Sbjct: 178 AKARNIDVVLVDTAGRIQTKTNLMNELGKINKVMKKVIPDAPHQTLLVLDATTGQNAVSQ 237 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F V TG+++TK+DGTA+GG ++ I K+PV ++G+GE +DL+ F A F Sbjct: 238 AKHFKEVVDITGIVLTKLDGTAKGGVVLSIHEELKVPVKWIGLGEREDDLQKFDASVF 295 >gi|327313610|ref|YP_004329047.1| signal recognition particle-docking protein FtsY [Prevotella denticola F0289] gi|326944322|gb|AEA20207.1| signal recognition particle-docking protein FtsY [Prevotella denticola F0289] Length = 316 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 128/292 (43%), Positives = 182/292 (62%), Gaps = 8/292 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG T + +T ++ + ++DD V ++LE++L+ SD+GV KI+ + +R Sbjct: 15 LDKGLEKTKQNVFSKLTRAVAGKSKVDDEVLDDLEEILVTSDVGVDTTIKIIRRI-EERV 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLSKPFN--WDFSH--RPHVILVVGVNGVGKTTVIG 129 AKD VS + + I +L + N W RP+VILVVGVNGVGKTT IG Sbjct: 74 AKDKYVSTSELNGILKSEITALLTENNTGSNDEWTLPEDARPYVILVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG KV L A DTFR+AA++Q++IW DR V ++G+D A++A++ + A Sbjct: 134 KLAYQFKQAGKKVYLGAADTFRAAAVEQIQIWGDRVGVPVVKQQMGADPASVAFDTLQSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A DV+IIDTAGRLHN LM + K+ V+K++ P APH VL VLD +TGQNA Q Sbjct: 194 KANGADVVIIDTAGRLHNKVGLMNELKKIKDVMKKVVPDAPHEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 F AV T L +TK+DGTA+GG +I I K+PV ++G+GEG+ DL+ F Sbjct: 254 RQFAAVTQITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQLF 305 >gi|228470068|ref|ZP_04054977.1| signal recognition particle-docking protein FtsY [Porphyromonas uenonis 60-3] gi|228308206|gb|EEK17061.1| signal recognition particle-docking protein FtsY [Porphyromonas uenonis 60-3] Length = 319 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 183/306 (59%), Gaps = 19/306 (6%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV---- 67 S + KLT+ A S ++DD + ++LED+L+ SD+GV KI+ Sbjct: 25 SMVDKLTRAVAGKS--------------KVDDAILDDLEDILVTSDVGVDTTLKIIKRIE 70 Query: 68 EELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 E + +Y ++ +L D V+ L+ + + F P+VI+VVGVNGVGKTT Sbjct: 71 ERVARDKYVGTSELKSILRDEVAALLAENGTTDGESFTLPAEAHPYVIMVVGVNGVGKTT 130 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+ + G +++L A DTFR+AAI+QL+IW +R + ++GSD A++A++ Sbjct: 131 TIGKLAYQFKQQGKRIVLGAADTFRAAAIEQLEIWGERVGVPVIKQQMGSDPASVAFDTL 190 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A A+ DV+IIDTAGRLHN LM + K+ RV+ ++ P APH VL VLD +TGQNA Sbjct: 191 QSAVAQNADVVIIDTAGRLHNQVSLMNELSKIKRVMAKVVPDAPHEVLLVLDGSTGQNAF 250 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q + F A + L +TK+DGTA+GG +I I K+PV ++G+GE I DL+ F ++F Sbjct: 251 EQAKQFTAATDVSALAITKLDGTAKGGVVIGISDQFKVPVKYIGLGEKIEDLQVFRKREF 310 Query: 307 SAVITG 312 I G Sbjct: 311 VDSIFG 316 >gi|323345504|ref|ZP_08085727.1| cell division protein FtsY [Prevotella oralis ATCC 33269] gi|323093618|gb|EFZ36196.1| cell division protein FtsY [Prevotella oralis ATCC 33269] Length = 317 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 124/278 (44%), Positives = 176/278 (63%), Gaps = 7/278 (2%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELI 92 I +DD V + LE++LI SD+GV KI+ + +R AKD VS + + E I Sbjct: 34 IAGKSTVDDDVLDNLEEVLITSDVGVDTTLKIIHRI-EERVAKDKYVSTSELNGILREEI 92 Query: 93 HKMLMP--LSKPFNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 +L NWD H+P+VILVVGVNGVGKTT IGKL+ + +AG KV L A D Sbjct: 93 TSLLAENHTVDNDNWDLPSDHKPYVILVVGVNGVGKTTTIGKLAWQFKNAGKKVFLGAAD 152 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+AA++Q++IW +R + ++GSD A++A++ + A+A DV++IDTAGRLHN Sbjct: 153 TFRAAAVEQIQIWGERVGVPVIRQQMGSDPASVAFDTLQSAKANGADVVLIDTAGRLHNK 212 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM + K+ V+K++ P AP V+ VLD +TGQNA Q + F AV T L +TK+DG Sbjct: 213 IGLMNELKKIKDVMKKVLPEAPDEVMLVLDGSTGQNAFEQAKQFSAVTQITSLAITKLDG 272 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TA+GG +I I K+PV ++G+GEG+ DL+ F + F Sbjct: 273 TAKGGVVIGISDQLKVPVKYIGLGEGVEDLQLFNNRQF 310 >gi|85058062|ref|YP_453764.1| cell division protein [Sodalis glossinidius str. 'morsitans'] gi|84778582|dbj|BAE73359.1| cell division protein [Sodalis glossinidius str. 'morsitans'] Length = 504 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 127/309 (41%), Positives = 192/309 (62%), Gaps = 12/309 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + A E + +L T L G + +++DD + EELE+ L+ +D+GV Sbjct: 193 EPPAPERAGFFTRLKNSLVKTRQNLGSGFIGLFRGKKIDDDLFEELEEQLLVADVGVETT 252 Query: 64 QKIVEELLT---KRYAKDVSVQRVLYDVSELIHKM---LMPLSKPFNWDFSHRPHVILVV 117 +KI++ L+ +R+ KD LY S+L +M L+ + +P P VIL+V Sbjct: 253 RKIIDGLIDHADRRHLKDAEA---LY--SQLRAEMATILVNVERPLEV-TGKAPFVILMV 306 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 GVNGVGKTT IGKL++ G VMLAAGDTFR+AA++QL++W +R + + G+D Sbjct: 307 GVNGVGKTTTIGKLARLYQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQQTGAD 366 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 +A++ +++ + A+A+ ++VLI DTAGRL N + LM + K++RV+K+LD APH V+ L Sbjct: 367 SASVIFDSIQAAKARGIEVLIADTAGRLQNKAHLMDELKKIVRVMKKLDVEAPHEVMLTL 426 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA+TGQNA+ Q +F+ G TG+ +TK+DGTA+GG + + IP+ F+GVGE I D Sbjct: 427 DASTGQNAVSQANLFNDAVGLTGIALTKLDGTAKGGVIFAVADRFGIPIRFIGVGEAIED 486 Query: 298 LEPFVAKDF 306 L PF A DF Sbjct: 487 LRPFKADDF 495 >gi|303247153|ref|ZP_07333428.1| signal recognition particle-docking protein FtsY [Desulfovibrio fructosovorans JJ] gi|302491579|gb|EFL51464.1| signal recognition particle-docking protein FtsY [Desulfovibrio fructosovorans JJ] Length = 538 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 125/302 (41%), Positives = 189/302 (62%), Gaps = 9/302 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 KL++G A T ++ + I ++ S +D+ EELE++LI +D+G A K+++ L K Sbjct: 241 KLSEGLAKTKDQIVKRIDGLLGSHTVIDEAFWEELEEILIMADVGYEPAAKLMDNLREKV 300 Query: 75 YAKDVSVQRVLYDV-SELIHKMLMPLS--KPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + + V D+ E + ++ P K N P V++++GVNGVGKTT I KL Sbjct: 301 RKRGTTDPAVFKDILREELAEIFRPQKTIKAIN-----PPEVVMMIGVNGVGKTTTIAKL 355 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + G KV++AAGDTFR+AAI+QLKIWADR A F +D AA+A+EA +A Sbjct: 356 AHRDIMRGKKVLIAAGDTFRAAAIEQLKIWADRVGASFYTKGENADPAAVAFEAMDKALT 415 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + DVL +DTAGRLH + LM + K+ RV+ + APH + VLDATTGQNAL Q ++ Sbjct: 416 EGFDVLYLDTAGRLHTKTNLMEELRKIRRVVAKKHTGAPHRSVLVLDATTGQNALSQTKL 475 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ AG +I+TK+DGTA+GG ++ I ++ +P+ ++G+GE + DL PFV +DF+ + Sbjct: 476 FNEAAGVDEIILTKLDGTAKGGVVVGIALSFGVPITYVGLGEKMEDLRPFVGQDFAQALL 535 Query: 312 GC 313 G Sbjct: 536 GV 537 >gi|288800011|ref|ZP_06405470.1| signal recognition particle-docking protein FtsY [Prevotella sp. oral taxon 299 str. F0039] gi|288333259|gb|EFC71738.1| signal recognition particle-docking protein FtsY [Prevotella sp. oral taxon 299 str. F0039] Length = 319 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 125/279 (44%), Positives = 177/279 (63%), Gaps = 9/279 (3%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELI 92 I+ ++DD V + LE++LI SD+GV KI+E + +R A+D VS + + E I Sbjct: 34 IVGKSKVDDEVLDSLEEILISSDVGVDTTLKIIERI-EERIARDKYVSTSELNGILREEI 92 Query: 93 HKMLMPLSKPFN---WDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 +L + F+ WD +P+VILVVGVNGVGKTT IGKL+ + AG KV L A Sbjct: 93 SALLTE-NNTFDSDSWDLPSDRKPYVILVVGVNGVGKTTTIGKLAYQFKKAGKKVYLGAA 151 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DTFR+AA++Q+ IW DR V ++G+D A++A++ A+A DV++IDTAGRLHN Sbjct: 152 DTFRAAAVEQISIWGDRVGVPVVKQQMGADPASVAFDTLSSAKANDADVVLIDTAGRLHN 211 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 LM + K+ V+K++ P AP VL VLD +TGQNA Q + F AV T L +TK+D Sbjct: 212 KVGLMNELKKIKDVMKKVFPTAPDEVLLVLDGSTGQNAFEQAKQFSAVTQITSLAITKLD 271 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 GTA+GG +I I K+PV ++G+GEG+ +L+ F K F Sbjct: 272 GTAKGGVVIGISDQLKVPVKYIGLGEGMENLQLFNKKQF 310 >gi|206559190|ref|YP_002229950.1| putative cell division protein [Burkholderia cenocepacia J2315] gi|198035227|emb|CAR51101.1| putative cell division protein [Burkholderia cenocepacia J2315] Length = 386 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 130/307 (42%), Positives = 185/307 (60%), Gaps = 7/307 (2%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 AS SW+ +L G A T IT + + ++D+ + EELE L+ SD GV + + Sbjct: 86 ASAKKSWLARLKTGLAKTG----SSITGVFVNTKIDEDLYEELETALLMSDAGVDATEYL 141 Query: 67 VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 + L K R + Q+V + +L+ ++L PL K + P V+++ GVNG GKT Sbjct: 142 LGALREKVRAGRLTDPQQVKAALHDLLVELLTPLEKSLMLGRAQ-PLVMMITGVNGAGKT 200 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K + V+LAAGDTFR+AA +QL +W +R + V E G D AA+ ++A Sbjct: 201 TSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDA 259 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+A+K+DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNA Sbjct: 260 VSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNA 319 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QV+ F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF A + Sbjct: 320 LTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVE 379 Query: 306 FSAVITG 312 F+ + G Sbjct: 380 FADALLG 386 >gi|304440217|ref|ZP_07400107.1| cell division protein FtsY [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371266|gb|EFM24882.1| cell division protein FtsY [Peptoniphilus duerdenii ATCC BAA-1640] Length = 432 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 122/299 (40%), Positives = 182/299 (60%), Gaps = 2/299 (0%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIV 67 E + + KL KG T + II + ++DD + E+LED+LI +D+G+ K+V Sbjct: 128 EKIGFFAKLKKGLDKTRKDMSVKFNTIIGAYVKIDDEMLEDLEDILISADVGMETTMKLV 187 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 + L V+ ++ + + LM + K + + +ILVVGVNGVGKTT Sbjct: 188 DNLRESIIENKVNDPNMVVPLLKEETLKLMDIDKSSELNLGDKS-IILVVGVNGVGKTTT 246 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ + G V++AAGDTFR+AAI+QLK W +R + D + GSD AA+ ++A + Sbjct: 247 IGKLANRFRKEGKSVLVAAGDTFRAAAIEQLKEWGNRANIDVIHQNEGSDPAAVIFDAIE 306 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+++ +DVLI DTAGRLHN LM + K+ V++ P A L VLDATTGQNA+ Sbjct: 307 AAKSRNIDVLICDTAGRLHNKQNLMKELEKISNVIETKYPEATRETLLVLDATTGQNAIN 366 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q + F A TG+++TK+DGTA+GG ++ + +P+ +GVGEGI+DL+ F +KDF Sbjct: 367 QAKTFKEAANITGMVLTKLDGTAKGGVVLALQSELGVPIKLVGVGEGIDDLQNFNSKDF 425 >gi|258449436|ref|ZP_05697539.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus A6224] gi|257857424|gb|EEV80322.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus A6224] Length = 416 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 126/297 (42%), Positives = 180/297 (60%), Gaps = 8/297 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71 K G + +E + ++I+ R++D+ E LE++LI +D+G + EEL Sbjct: 87 KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146 Query: 72 TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 +R +D R ++ + E+ H+ S+ N + R +VIL+VGVNGVGKTT IG Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNIE-DGRLNVILMVGVNGVGKTTTIG 204 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KVMLAAGDTFR+ AIDQLK+W +R D + GSD AA+ Y+A A Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K VD+LI DTAGRL N + LM + K+ RV+ R P A H L LDATTGQNAL Q Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDALHEALLCLDATTGQNALSQA 324 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F V TG+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381 >gi|228474984|ref|ZP_04059712.1| cell division protein FtsY [Staphylococcus hominis SK119] gi|228270969|gb|EEK12357.1| cell division protein FtsY [Staphylococcus hominis SK119] Length = 409 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 124/297 (41%), Positives = 181/297 (60%), Gaps = 8/297 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K G + +E + ++I+ R +D+ E LE++LI +D+G ++ +EL T+ Sbjct: 81 KFKAGLEKSRENFQEQLNNLIARYRTVDEDFFEALEEMLITADVGFNTVMQLTDELRTEA 140 Query: 75 YAKDVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 +++ L +V E+ H+ S+ N + R +VIL+VGVNGVGKTT IG Sbjct: 141 QRRNIKETEGLREVIVEKIVEIYHQE-DDHSEAMNIE-DGRLNVILMVGVNGVGKTTTIG 198 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KVMLAAGDTFR+ AI+QL++W DR + + GSD AA+ Y+A A Sbjct: 199 KLAHRYKMEGKKVMLAAGDTFRAGAIEQLQVWGDRVGVEVIRQSEGSDPAAVVYDAINAA 258 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K VD+LI DTAGRL N S LM + KM RV+ R P APH L LDATTGQ+AL Q Sbjct: 259 KNKGVDILICDTAGRLQNKSNLMQELDKMKRVISRAVPDAPHEALLCLDATTGQSALSQA 318 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F V +G+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF + + Sbjct: 319 RSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKLDDLQPFNPESY 375 >gi|158320494|ref|YP_001513001.1| signal recognition particle-docking protein FtsY [Alkaliphilus oremlandii OhILAs] gi|158140693|gb|ABW19005.1| signal recognition particle-docking protein FtsY [Alkaliphilus oremlandii OhILAs] Length = 431 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 138/297 (46%), Positives = 194/297 (65%), Gaps = 15/297 (5%) Query: 26 LKLKEGITDII-----SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80 LK K GITD + S +++D+ + EELE++LI SD+GV +IVE+L + + +S Sbjct: 138 LKTKSGITDRVDHLLKSYKKIDEDLFEELEEILITSDMGVQTTMEIVEDLKERVRKEKIS 197 Query: 81 ----VQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 V+++L D ++E++ ++ P SK + P +ILVVGVNGVGKTT IGK++ + Sbjct: 198 DPLEVKQLLMDKITEILEEL--PDSK---INIEPSPAIILVVGVNGVGKTTSIGKMAYRF 252 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 G KV+LAAGDTFR+AAIDQLKIW DR D + + SD AA+ Y+A + A+A+ D Sbjct: 253 KSEGKKVLLAAGDTFRAAAIDQLKIWGDRVGVDVIRHQEESDPAAVIYDAIQAAKARNTD 312 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 VLI DTAGRLHN LM +GK+ +V+ R +A VL VLDATTGQNA++Q + F V Sbjct: 313 VLICDTAGRLHNKKNLMNELGKIFKVVDREYENASKEVLLVLDATTGQNAVQQAKTFKEV 372 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 A +GLI+TK+DGTA+GG ++ I +PV +GVGE + DL+ F + F I G Sbjct: 373 ANISGLILTKLDGTAKGGVIVGISRELNVPVKLIGVGEKMEDLQEFNPQSFVKAIFG 429 >gi|323141213|ref|ZP_08076114.1| signal recognition particle-docking protein FtsY [Phascolarctobacterium sp. YIT 12067] gi|322414356|gb|EFY05174.1| signal recognition particle-docking protein FtsY [Phascolarctobacterium sp. YIT 12067] Length = 305 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 123/298 (41%), Positives = 185/298 (62%), Gaps = 4/298 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L +G + T + I +++ S +DD +ELE +L+ +D+GV +K+++ Sbjct: 1 MGFFERLKEGLSKTRRNFTDRIQELVGLSAAIDDDFLDELEMILLSADVGVKTTEKLIDA 60 Query: 70 LLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + K++S + V+ + + + +ML + +P VILVVGVNGVGKTT I Sbjct: 61 VRKAAKKKEISGTEDVIPFLKKYMAEMLADSGQ--RTRIGAKPTVILVVGVNGVGKTTTI 118 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ + KV+LAAGDTFR+AA +QL+IW +R D + G+D AA+ ++A K Sbjct: 119 GKLANYFTLFKYKVVLAAGDTFRAAAGEQLQIWGERAHCDVIRHAEGADPAAVVFDAMKA 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A A+K D+L IDTAGRLHN + LM + K+ R++KR P APH VLDATTGQNA+ Q Sbjct: 179 AIARKADILFIDTAGRLHNKANLMNELEKIHRIIKREIPEAPHETFLVLDATTGQNAINQ 238 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++F A TG+++TK+DGTA+GG ++ I +PV ++GVGEGI D PF F Sbjct: 239 AKVFMETAKVTGVVLTKLDGTAKGGVVVAIKEELGLPVKWIGVGEGIMDFRPFEPDKF 296 >gi|28198783|ref|NP_779097.1| cell division protein [Xylella fastidiosa Temecula1] gi|182681482|ref|YP_001829642.1| signal recognition particle-docking protein FtsY [Xylella fastidiosa M23] gi|28056874|gb|AAO28746.1| cell division protein [Xylella fastidiosa Temecula1] gi|182631592|gb|ACB92368.1| signal recognition particle-docking protein FtsY [Xylella fastidiosa M23] gi|307579937|gb|ADN63906.1| signal recognition particle-docking protein FtsY [Xylella fastidiosa subsp. fastidiosa GB514] Length = 397 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 118/269 (43%), Positives = 172/269 (63%), Gaps = 2/269 (0%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMP 98 RLD+ + +E+E LI +D+GV+ IV+ L + A++ + +Q +L + + +L P Sbjct: 117 RLDENLLDEIETALITADVGVSTTNAIVDGLRKRMKAREFADIQTLLAALRNELITILRP 176 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +SKP P V LVVGVNGVGKTT IGKL+K G +MLAAGDTFR+AA+ QL Sbjct: 177 VSKPLIVKRDALPFVFLVVGVNGVGKTTTIGKLAKWFKRDGYSLMLAAGDTFRAAAVAQL 236 Query: 159 KIWADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 + W +R S + + +DAA++ Y+A + A+A+ ++VLI DTAGRLH LM + K Sbjct: 237 QAWGERNSITVIAQKGPNADAASVVYDALQAAKARSIEVLIADTAGRLHTQIGLMNELSK 296 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + RVL +LD APH VL V+D TTGQNAL Q+ FHA TG+++TK+DGTA+GG + Sbjct: 297 IRRVLGKLDSTAPHEVLMVIDGTTGQNALSQLRQFHAAVNVTGIVVTKLDGTAKGGVVFT 356 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + IP++F+ +GE + D+ F + F Sbjct: 357 LAREFGIPIHFISIGEQLEDMHFFDPEAF 385 >gi|73540040|ref|YP_294560.1| signal recognition particle-docking protein FtsY [Ralstonia eutropha JMP134] gi|72117453|gb|AAZ59716.1| signal recognition particle-docking protein FtsY [Ralstonia eutropha JMP134] Length = 382 Score = 223 bits (569), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 126/313 (40%), Positives = 186/313 (59%), Gaps = 7/313 (2%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 ++ + A W+++L G + TS I+ + ++D+ + EELE L+ +D GV Sbjct: 76 LAAAQTAEARRGWMQRLRTGLSKTS----RNISTLFVGMKVDEALFEELETALLMADAGV 131 Query: 61 AVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 + ++ EL + R + S + V + +L+ ++L PL K +P V+++ GV Sbjct: 132 EATEYLLGELRKRVRSDRIESAEGVKAALRDLLIQLLRPLEKTMELG-REQPLVMMIAGV 190 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NG GKTT IGKL K G V+LAAGDTFR+AA +QL IW +R + V E G D A Sbjct: 191 NGAGKTTSIGKLCKHFQHYGQSVLLAAGDTFRAAAREQLTIWGERNNVTVVAQESG-DPA 249 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ ++A A+A+ +D+++ DTAGRL LM + K+ RV+ + P APH VL V+DA Sbjct: 250 AVIFDAVNAARARGIDIVMADTAGRLPTQLHLMEELKKVKRVISKAMPTAPHEVLLVIDA 309 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQNAL Q F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+ Sbjct: 310 NTGQNALAQTRAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQ 369 Query: 300 PFVAKDFSAVITG 312 PF A++F+ + G Sbjct: 370 PFKAEEFADALLG 382 >gi|71275807|ref|ZP_00652091.1| Cell division transporter substrate-binding protein FtsY [Xylella fastidiosa Dixon] gi|71900406|ref|ZP_00682539.1| Cell division transporter substrate-binding protein FtsY [Xylella fastidiosa Ann-1] gi|170730211|ref|YP_001775644.1| cell division protein [Xylella fastidiosa M12] gi|71163385|gb|EAO13103.1| Cell division transporter substrate-binding protein FtsY [Xylella fastidiosa Dixon] gi|71729838|gb|EAO31936.1| Cell division transporter substrate-binding protein FtsY [Xylella fastidiosa Ann-1] gi|167965004|gb|ACA12014.1| cell division protein [Xylella fastidiosa M12] Length = 397 Score = 223 bits (569), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 119/269 (44%), Positives = 171/269 (63%), Gaps = 2/269 (0%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMP 98 RLD+ + +E+E LI +D+GV+ IV+ L + A++ + +Q +L + + +L P Sbjct: 117 RLDENLLDEIETALITADVGVSTTNAIVDGLRKRMKAREFADIQTLLAALRNELITILRP 176 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +SKP P V LVVGVNGVGKTT IGKL+K G +MLAAGDTFR+AA+ QL Sbjct: 177 VSKPLIVKRDALPFVFLVVGVNGVGKTTTIGKLAKWFKRDGYSLMLAAGDTFRAAAVAQL 236 Query: 159 KIWADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 + W +R S + + +DAA++ Y+A + A+A+ +VLI DTAGRLH LM + K Sbjct: 237 QAWGERNSITVIAQKGPNADAASVVYDALQAAKARSTEVLIADTAGRLHTQIGLMNELSK 296 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + RVL +LD APH VL V+D TTGQNAL Q+ FHA TGL++TK+DGTA+GG + Sbjct: 297 IRRVLGKLDSTAPHEVLMVIDGTTGQNALSQLRQFHAAVNVTGLVVTKLDGTAKGGVVFT 356 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + IP++F+ +GE + D+ F + F Sbjct: 357 LAREFGIPIHFISIGEQLEDMHFFDPEAF 385 >gi|331701483|ref|YP_004398442.1| signal recognition particle-docking protein FtsY [Lactobacillus buchneri NRRL B-30929] gi|329128826|gb|AEB73379.1| signal recognition particle-docking protein FtsY [Lactobacillus buchneri NRRL B-30929] Length = 446 Score = 223 bits (569), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 121/312 (38%), Positives = 189/312 (60%), Gaps = 9/312 (2%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60 S + S + S ++ KG + + + ++++ R +D+ ++LED+LI SD+G Sbjct: 126 SPEPAESATDSNTQQYEKGLEKSRSSFGQKLNALLANFRHVDESFFDDLEDMLIESDVGF 185 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS------HRPHVI 114 + +I +EL + ++ + + +V ++ K++ + N + S P VI Sbjct: 186 ETSMRIADELRDEVKLQNAKNPKDVQNV--IVKKLIDMYDQAGNGENSAINMAKSGPTVI 243 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 + VGVNGVGKTT IGK++K D G KV+LAA DTFR+ AI+QL +WA+R D V + Sbjct: 244 MFVGVNGVGKTTTIGKMAKMYKDQGKKVVLAAADTFRAGAIEQLNVWAERDGVDIVKGKA 303 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 SD A++ Y+A +A+ + D+L++DTAGRL N LM + KM ++L R P APH VL Sbjct: 304 KSDPASVVYDAVVKARKEDYDILMVDTAGRLQNKVNLMNELSKMKKILTREIPEAPHEVL 363 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VLDATTGQNA+ Q +MF +G+++TK+DGTARGG ++ I +PV ++G+GE Sbjct: 364 LVLDATTGQNAMTQAKMFKETTDVSGIVLTKLDGTARGGIVLAIRSELHLPVKYVGLGEQ 423 Query: 295 INDLEPFVAKDF 306 + DL+PF DF Sbjct: 424 VGDLKPFDPNDF 435 >gi|290968347|ref|ZP_06559888.1| signal recognition particle-docking protein FtsY [Megasphaera genomosp. type_1 str. 28L] gi|290781622|gb|EFD94209.1| signal recognition particle-docking protein FtsY [Megasphaera genomosp. type_1 str. 28L] Length = 313 Score = 223 bits (569), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 124/302 (41%), Positives = 184/302 (60%), Gaps = 4/302 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + KL KG T L + I ++ ++DD + E+LE +L+ D+G+ + I+ + Sbjct: 1 MGFFAKLKKGLEKTKTSLIQNIETVVCGYAKIDDDMYEDLEAVLLTGDVGLETTEYILRQ 60 Query: 70 LLTKRYAKDVSVQR-VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + T K++ + V+ V I K+L P VI +VGVNGVGKTT I Sbjct: 61 IRTGVKTKEIQEGKDVVPYVQRCITKLLEENDTPV--PTREGTEVIFIVGVNGVGKTTTI 118 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ G V++AAGDTFR+AA +QL IWADR + + G+DAAA+ ++A Sbjct: 119 GKLANYYRQQGKSVLVAAGDTFRAAASEQLTIWADRIGVPIIKHQEGADAAAVIFDATAS 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +D++++DTAGRLH + LM + KM RV R APH L VLDATTGQNA+ Q Sbjct: 179 AKARGIDIVLVDTAGRLHTKANLMEELRKMARVAGRNIAGAPHETLLVLDATTGQNAVSQ 238 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 ++F TG+++TK+DGTA+GG ++ + T +PV ++GVGEGI DL+PF A DF+A Sbjct: 239 AKLFGETVPLTGVVLTKLDGTAKGGIILSVKRTLGVPVRWVGVGEGIEDLQPFSAVDFAA 298 Query: 309 VI 310 + Sbjct: 299 AL 300 >gi|167561478|ref|ZP_02354394.1| signal recognition particle-docking protein FtsY [Burkholderia oklahomensis EO147] Length = 434 Score = 223 bits (569), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 128/302 (42%), Positives = 183/302 (60%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW+ +L G A TS IT++ + ++D+ + EELE L+ SD G+ + +++ L Sbjct: 139 SWLARLKSGLAKTS----SSITNVFVNTKIDEALYEELETALLMSDAGIDATEHLLDALR 194 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ +L PL K + P V+++ GVNG GKTT IGK Sbjct: 195 EKVRTGRLTDPQQVKDALRGLLVDLLKPLEKSLMLGRAQ-PLVMMIAGVNGAGKTTSIGK 253 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 254 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 312 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQN L QV+ Sbjct: 313 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNGLAQVK 372 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I IPVYF+GVGE + DL+PF A++F+ + Sbjct: 373 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFADAL 432 Query: 311 TG 312 G Sbjct: 433 LG 434 >gi|309379872|emb|CBX21648.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 487 Score = 223 bits (569), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 120/306 (39%), Positives = 186/306 (60%), Gaps = 5/306 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW +L +G + K+ + + + ++D+ + EELE +LI D+G+ + +++++ Sbjct: 186 LSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITGDMGMEATEYLMKDV 245 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 246 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 305 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ ++A + A Sbjct: 306 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 364 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 365 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 424 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF D A Sbjct: 425 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPF---DACAF 481 Query: 310 ITGCLD 315 + LD Sbjct: 482 VDALLD 487 >gi|254805877|ref|YP_003084098.1| signal recognition particle protein [Neisseria meningitidis alpha14] gi|254669419|emb|CBA08634.1| signal recognition particle protein [Neisseria meningitidis alpha14] Length = 421 Score = 223 bits (568), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 120/303 (39%), Positives = 186/303 (61%), Gaps = 14/303 (4%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G + K+ + + + ++D+ + EELE +LI SD+G+ + +++++ Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179 Query: 71 LTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 +D + L D +EL ++ ++ PL KP + P VI++ G+NG G Sbjct: 180 ------RDRVSLKGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGINGAG 233 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ + Sbjct: 234 KTTSIGKLAKYFQAHGKSVLLAAGDTFRAAAREQLQAWGERNNV-TVISQTTGDSAAVCF 292 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A + A+A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQ Sbjct: 293 DAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQ 352 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NA+ QV+ F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A Sbjct: 353 NAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDA 412 Query: 304 KDF 306 + F Sbjct: 413 RAF 415 >gi|329118182|ref|ZP_08246892.1| cell division protein FtsY [Neisseria bacilliformis ATCC BAA-1200] gi|327465603|gb|EGF11878.1| cell division protein FtsY [Neisseria bacilliformis ATCC BAA-1200] Length = 470 Score = 223 bits (568), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 125/305 (40%), Positives = 188/305 (61%), Gaps = 9/305 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W +L +G + K+ + + + ++DD + EELE +L+ SD+G+ + I+E++ Sbjct: 170 WAARLKQGLGKSRDKMAKSLAGVFGGGKIDDELYEELETVLLTSDMGIEATEHIMEDVRR 229 Query: 73 KRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + K +S ++R L E ++++L PL +P + +P VI++ G+NG GKTT I Sbjct: 230 RVSLKGLSDSGQLRRAL---KESLYELLAPLEQPLEIPDNGQPFVIMMAGINGAGKTTSI 286 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+K G V+LAAGDTFR+AA +QL+ W R V S+ D+AA+ Y+A + Sbjct: 287 GKLAKYFQQQGKTVILAAGDTFRAAAREQLQEWGARNGV-TVVSQAKGDSAAVCYDAVES 345 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A++ D+++ DTAGRL LM I K+ RVL++ APH ++ VLDA GQNA+ Q Sbjct: 346 AKARRTDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMSDAPHEIIVVLDANIGQNAVNQ 405 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF-S 307 V F G TGLI+TK+DGTA+GG L + IPV ++GVGEGI+DL PF A+ F Sbjct: 406 VIAFDDALGVTGLIVTKLDGTAKGGVLAALAAARPIPVRYIGVGEGIDDLRPFNARAFVD 465 Query: 308 AVITG 312 A+I G Sbjct: 466 ALIDG 470 >gi|315652047|ref|ZP_07905048.1| cell division protein FtsY [Eubacterium saburreum DSM 3986] gi|315485694|gb|EFU76075.1| cell division protein FtsY [Eubacterium saburreum DSM 3986] Length = 309 Score = 223 bits (568), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 121/299 (40%), Positives = 179/299 (59%), Gaps = 10/299 (3%) Query: 13 WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L +G T + GI ++ + +D+ EELE+ LI DIG+ + I+EEL Sbjct: 8 FFSRLVEGLTKTRNAVVSGIENVFLGYEVIDEDFYEELEETLIMGDIGIRASTDIIEELR 67 Query: 72 TK----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 + R + VL D K M L + ++F +R V+ V+GVNGVGKTT Sbjct: 68 KRVKEERLNSPAQCREVLIDTI----KRKMDLGENA-YEFENRKSVVFVIGVNGVGKTTS 122 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 +GKL+ ++ + G KV++ A DTFR+AAI+QL+ W R D + GSD A+ ++A K Sbjct: 123 VGKLASQLKNDGKKVLVVAADTFRAAAIEQLEEWTKRAGVDIIAQNEGSDPGAVVFDACK 182 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+A+ DV+I+DTAGRLHN LM + K+ ++++R P A L VLD TTGQNAL Sbjct: 183 AAKARNTDVMIVDTAGRLHNKKNLMEELKKINKIIEREYPDAYRETLVVLDGTTGQNALE 242 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q F+ A TG+I+TK+DG+A+GG + I IPV ++GVGE I+DL+ F +K+F Sbjct: 243 QARAFNEAANITGIILTKLDGSAKGGIAVAIQAELSIPVKYIGVGEKIDDLQKFNSKEF 301 >gi|305667746|ref|YP_003864033.1| putative recognition particle-docking protein [Maribacter sp. HTCC2170] gi|88707583|gb|EAQ99825.1| putative recognition particle-docking protein [Maribacter sp. HTCC2170] Length = 318 Score = 223 bits (568), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 123/300 (41%), Positives = 181/300 (60%), Gaps = 19/300 (6%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ KL+K A S ++DD V + LE++L+ SD+GV KI+E + Sbjct: 26 SFFSKLSKAVAGKS--------------KVDDDVLDNLEEVLVTSDVGVDTTLKIIERIE 71 Query: 72 TK----RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 + +Y + ++L + ++ L+ + + ++ +P+VI+VVGVNGVGKTT Sbjct: 72 ARVSEDKYMGTDELNKILREEIAGLLSETNIGEETEYSIPADKKPYVIMVVGVNGVGKTT 131 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+ + GLKV+L A DTFR+AAIDQL++WADR V ++GSD A++A++ Sbjct: 132 TIGKLAYQFKKQGLKVVLGAADTFRAAAIDQLQVWADRVDVPIVKQKMGSDPASVAFDTL 191 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A + DV+IIDTAGRLHN LM + K+ RV++++ PH VL VLD +TGQNA Sbjct: 192 SSAVTQDADVVIIDTAGRLHNKVNLMNELTKVKRVMQKVVDDTPHDVLLVLDGSTGQNAF 251 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q + F T L +TK+DGTA+GG +I I +IPV ++GVGEGI DL+ F +F Sbjct: 252 EQAKQFTKATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIEDLQVFNKYEF 311 >gi|319938300|ref|ZP_08012697.1| signal recognition particle-docking protein ftsY [Coprobacillus sp. 29_1] gi|319806593|gb|EFW03251.1| signal recognition particle-docking protein ftsY [Coprobacillus sp. 29_1] Length = 326 Score = 223 bits (568), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 129/320 (40%), Positives = 192/320 (60%), Gaps = 16/320 (5%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 A ++ ++ L K +S S K+ E R +DD EELE++LI SD+GV++ I Sbjct: 16 AKQNDKYVAGLDKSSSSFSAKINELAA---RYREIDDDYFEELENVLIMSDVGVSMVMTI 72 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLM------PLSKPFNWDFSHRPHVILVVGVN 120 ++E+ + +++ +++ D+ +I KM + ++ N+D VIL+VGVN Sbjct: 73 IDEIKKEVRLQNIKNPQMINDI--IIDKMFVIYANDSYMTTKINYD-DQDLTVILMVGVN 129 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT I KL+ M G VM+AAGDTFR+ AIDQL +WA+R + + + G D ++ Sbjct: 130 GAGKTTTIAKLAHMMLSEGKTVMVAAGDTFRAGAIDQLAVWAERLGIECIKGKEGGDPSS 189 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++A QA+ K VDVLI DTAGRL N LM + KM R++KR+ P P L V+DAT Sbjct: 190 VVFDALNQAKDKGVDVLICDTAGRLQNKVNLMNELEKMNRIIKRVVPSGPQETLLVIDAT 249 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQN + Q + F + TG+++TKMDGTA+GG ++ I T IPV F+G+GE ++DL+ Sbjct: 250 TGQNGVSQAQEFSKITDITGIVLTKMDGTAKGGIVLSIKDTLNIPVKFMGLGESMDDLQE 309 Query: 301 FVAKDFSAVITG-CLDYGEE 319 F D I G C + EE Sbjct: 310 F---DLEQYIYGLCKNLMEE 326 >gi|108760294|ref|YP_633872.1| signal recognition particle-docking protein FtsY [Myxococcus xanthus DK 1622] gi|108464174|gb|ABF89359.1| signal recognition particle-docking protein FtsY [Myxococcus xanthus DK 1622] Length = 463 Score = 223 bits (568), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 121/274 (44%), Positives = 177/274 (64%), Gaps = 8/274 (2%) Query: 37 SSRRLDDGVREELEDLLIRSDIGVAVAQKIVE---ELLTKRYAKDVSVQRVLYDVSELIH 93 R++D+ V ELE++L +DIGV A +VE E L + KD +R+ + + + Sbjct: 188 QQRQVDESVLAELEEILFTADIGVRTANHLVEVAREKLKRNELKDP--ERIKGLIRDEVA 245 Query: 94 KML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 ++ +P+ P + + PHVI+VVGVNG GKTT IGKL+ K++ G KV+LAAGDTFR+ Sbjct: 246 RICDLPV--PRSLEGGGPPHVIMVVGVNGAGKTTTIGKLASKLTSEGKKVVLAAGDTFRA 303 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AA +QL +WA+R A V G D +A+ +EA K+A+ + DV+I DTAGRLH + LM Sbjct: 304 AATEQLDVWAERAQAQLVKGAEGGDPSAVIFEAVKKAKEEGADVIIADTAGRLHTKAPLM 363 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + K+ RV+ + P APH VL VLD+T GQNA++Q + FH G + + +TK+DGTA+G Sbjct: 364 EELKKVKRVMDKALPGAPHEVLLVLDSTNGQNAIQQAKQFHEAVGVSAIALTKLDGTAKG 423 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G +I I K+PV ++GVGE + DL F ++F Sbjct: 424 GVVIGICDELKLPVVWVGVGEKVADLRRFEPREF 457 >gi|325103016|ref|YP_004272670.1| signal recognition particle-docking protein FtsY [Pedobacter saltans DSM 12145] gi|324971864|gb|ADY50848.1| signal recognition particle-docking protein FtsY [Pedobacter saltans DSM 12145] Length = 321 Score = 223 bits (568), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 116/277 (41%), Positives = 176/277 (63%), Gaps = 6/277 (2%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYD-VS 89 +I +DD V ++LE++L+ SD+GV KI+E + + +Y + ++L + + Sbjct: 39 VIGKSTVDDEVLDDLEEILVTSDVGVTTTLKIIERIENRVAKNKYLNTSELNQILREEIQ 98 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 L+ + + FN+ +P+VI+VVGVNGVGKTT IGKL+ ++ +AG KV+L A DT Sbjct: 99 ALLEENNSADFEQFNYS-GKKPYVIMVVGVNGVGKTTTIGKLAYQLREAGNKVVLGAADT 157 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+AA+DQ+K+W +R V + +D A++A++ + A A D+ IIDTAGRLHN Sbjct: 158 FRAAAVDQIKLWGERVDVRVVSQGMNADPASVAFDTLQSAVANDEDIAIIDTAGRLHNKV 217 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 LM + K+ V++++ P APH +L VLDA+TGQNA+ Q + F L +TK+DGT Sbjct: 218 GLMNELTKIKNVMQKVVPGAPHEILLVLDASTGQNAIEQCKQFTQATDVNALALTKLDGT 277 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 A+GG +I I KIPV ++GVGE + DL+ F KDF Sbjct: 278 AKGGVVIGISDQFKIPVKYIGVGEKMTDLQLFNKKDF 314 >gi|296314873|ref|ZP_06864814.1| signal recognition particle-docking protein FtsY [Neisseria polysaccharea ATCC 43768] gi|296838320|gb|EFH22258.1| signal recognition particle-docking protein FtsY [Neisseria polysaccharea ATCC 43768] Length = 469 Score = 223 bits (568), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 123/302 (40%), Positives = 183/302 (60%), Gaps = 14/302 (4%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW +L +G + K+ + + + ++D+ + EELE +LI D+G+ E L Sbjct: 169 SWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITGDMGMEAT-----EYL 223 Query: 72 TKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 K VS+ + L D +EL ++ ++ PL KP + P VI++ G+NG GK Sbjct: 224 MKDVRDRVSL-KGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGK 282 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ ++ Sbjct: 283 TTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNV-TVISQTTGDSAAVCFD 341 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + A+A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQN Sbjct: 342 AVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPDAPHEIIVVLDANIGQN 401 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ QV+ F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ Sbjct: 402 AVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDAR 461 Query: 305 DF 306 F Sbjct: 462 AF 463 >gi|325145480|gb|EGC67754.1| signal recognition particle-docking protein FtsY [Neisseria meningitidis M01-240013] Length = 421 Score = 223 bits (568), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 120/303 (39%), Positives = 186/303 (61%), Gaps = 14/303 (4%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G + K+ + + + ++D+ + EELE +LI SD+G+ + +++++ Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179 Query: 71 LTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 +D + L D +EL ++ ++ PL KP + P VI++ G+NG G Sbjct: 180 ------RDRVSLKGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGINGAG 233 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ + Sbjct: 234 KTTSIGKLAKYFQAHGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCF 292 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A + A+A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQ Sbjct: 293 DAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQ 352 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NA+ QV+ F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A Sbjct: 353 NAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDA 412 Query: 304 KDF 306 + F Sbjct: 413 RAF 415 >gi|198274635|ref|ZP_03207167.1| hypothetical protein BACPLE_00787 [Bacteroides plebeius DSM 17135] gi|198272082|gb|EDY96351.1| hypothetical protein BACPLE_00787 [Bacteroides plebeius DSM 17135] Length = 321 Score = 223 bits (568), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 183/297 (61%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG + T + I ++ + ++DD V + LE++LI SD+GV I++ + T R Sbjct: 15 LDKGLSKTKESVFGKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRIET-RV 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIG 129 AKD V+ Q + + E I +LM + DF P+VI+VVGVNGVGKTT IG Sbjct: 74 AKDKYVNTQELNNILREEIAALLMENNTVDAADFDVPQDKTPYVIMVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG KV L A DTFR+AA++QL IW +R + ++G+D A++A++ A Sbjct: 134 KLAYQFKKAGKKVYLGAADTFRAAAVEQLDIWGERVGVPVIKQKMGADPASVAFDTLSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A DV+IIDTAGRLHN LM + K+ V+K++ P APH VL VLD +TGQNA Q Sbjct: 194 KANNADVVIIDTAGRLHNKIGLMNELTKIKNVMKKVVPDAPHEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F T + +TK+DGTA+GG +I I KIPV ++G+GEG+ DL+ F ++F Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQIFRRREF 310 >gi|172061768|ref|YP_001809420.1| signal recognition particle-docking protein FtsY [Burkholderia ambifaria MC40-6] gi|171994285|gb|ACB65204.1| signal recognition particle-docking protein FtsY [Burkholderia ambifaria MC40-6] Length = 386 Score = 223 bits (568), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 130/305 (42%), Positives = 185/305 (60%), Gaps = 13/305 (4%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 AS SW+ +L G A T IT + + ++D+ + EELE L+ SD GV + + Sbjct: 86 ASAKKSWLTRLKTGLAKTG----SSITGVFVNTKIDEDLYEELEAALLMSDAGVDATEYL 141 Query: 67 V----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + E++ T R V+ L+D L+ ++L PL K + +P V+++ GVNG Sbjct: 142 LGALREKVKTGRLTDPQQVKSALHD---LLVELLKPLEKSLMLGRA-QPLVMMITGVNGA 197 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K + V+LAAGDTFR+AA +QL +W +R + V E G D AA+ Sbjct: 198 GKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVI 256 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A A+A+K+DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TG Sbjct: 257 FDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTG 316 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL QV+ F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF Sbjct: 317 QNALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFS 376 Query: 303 AKDFS 307 A +F+ Sbjct: 377 AVEFA 381 >gi|239906646|ref|YP_002953387.1| cell division protein FtsY [Desulfovibrio magneticus RS-1] gi|239796512|dbj|BAH75501.1| cell division protein FtsY [Desulfovibrio magneticus RS-1] Length = 434 Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 122/299 (40%), Positives = 186/299 (62%), Gaps = 3/299 (1%) Query: 16 KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 KL++G A T ++ + I ++ +D+ EELE++LI +D+G A K+++ L K Sbjct: 137 KLSEGLAKTKEQIVKRIDGLLGRHAVIDEAFWEELEEILIMADVGFEPAAKLLDALRDKV 196 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 + + V D+ L ++ P + P V++++GVNGVGKTT I KL+ + Sbjct: 197 RKRGTTDPAVFKDI--LREELAEIFRTPKTIKAINPPEVVMMIGVNGVGKTTTIAKLAHR 254 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G KV++AAGDTFR+AAI+QL IWA R ADF +D AA+A+EA +A A+ Sbjct: 255 DMMRGKKVLIAAGDTFRAAAIEQLHIWAKRVGADFYSKGANADPAAVAFEAMDKALAEGY 314 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 DV+ +DTAGRLH + LM + K+ RV+ + P APH + VLDATTGQNAL QV++F Sbjct: 315 DVVYLDTAGRLHTKTNLMEELRKIHRVVGKKHPGAPHRSVLVLDATTGQNALSQVKLFGE 374 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 AG +I+TK+DGTA+GG ++ I ++ +P+ ++G+GE + DL PF +DF+ + G Sbjct: 375 AAGVDEIILTKLDGTAKGGVVVGIALSFSVPITYVGLGEKMEDLRPFDGQDFAQALLGV 433 >gi|319892233|ref|YP_004149108.1| Signal recognition particle receptor protein FtsY, alpha subunit [Staphylococcus pseudintermedius HKU10-03] gi|317161929|gb|ADV05472.1| Signal recognition particle receptor protein FtsY, alpha subunit [Staphylococcus pseudintermedius HKU10-03] gi|323464670|gb|ADX76823.1| cell division protein FtsY, putative [Staphylococcus pseudintermedius ED99] Length = 399 Score = 223 bits (567), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 123/299 (41%), Positives = 186/299 (62%), Gaps = 12/299 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K +G + + + ++++ R++D+ E LE++LI++D+G ++V+EL + Sbjct: 80 KFREGLEKSRENFQNQLNNLLAHYRKVDEDFFEALEEMLIQADVGFNTVMELVDELRMEA 139 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTV 127 ++++ D+ E I + ++ + S+ N + R +VIL+VGVNGVGKTT Sbjct: 140 KRRNITETE---DLREAIVEKIVEIYQQDDEKSEEMNIE-DGRLNVILMVGVNGVGKTTT 195 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ + G KVMLAAGDTFR+ AI+QL++W R D + GSD AA+ Y+A Sbjct: 196 IGKLAHRYQAQGKKVMLAAGDTFRAGAIEQLEVWGQRVGVDVIRQGEGSDPAAVMYDAIN 255 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ K VD+LI DTAGRL N LM + K+ RV+ R P APH VL LDATTGQNAL Sbjct: 256 AAKNKGVDILICDTAGRLQNKQNLMNELEKVKRVISRSVPDAPHEVLLALDATTGQNALA 315 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q + F V TG+++TK+DGTA+GG ++ I IPV ++G+GE ++DL+PF A+ + Sbjct: 316 QAKAFKEVTDVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKLDDLQPFNAESY 374 >gi|332704186|ref|ZP_08424274.1| signal recognition particle-docking protein FtsY [Desulfovibrio africanus str. Walvis Bay] gi|332554335|gb|EGJ51379.1| signal recognition particle-docking protein FtsY [Desulfovibrio africanus str. Walvis Bay] Length = 476 Score = 223 bits (567), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 121/301 (40%), Positives = 188/301 (62%), Gaps = 7/301 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73 KL++G T ++ + I +++S ++D+ EELE++LI +D+G + K++E L + Sbjct: 180 KLSEGLEKTKEQISKRIEGLMASHSKIDESFWEELEEILIMADVGFEPSMKLIERLRDRV 239 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 R A R E + + L + K P + P V++++GVNGVGKTT I KL+ Sbjct: 240 RKAGTDDPARF----KEFLREELETIFKAPKRITAINPPEVVMMIGVNGVGKTTTIAKLA 295 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 + G +V++AAGDTFR+AAI+QL+IWA R A F G+D AA+A+EA +A ++ Sbjct: 296 YRAQMQGRRVLIAAGDTFRAAAIEQLEIWAKRVGAGFYSKGAGADPAAVAFEAVDKAVSE 355 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 D+L++DTAGRLH LM + K+ RV + P +PH + V+DATTGQNAL+Q ++F Sbjct: 356 GYDLLLLDTAGRLHTKINLMEELKKIQRVCGKKHPGSPHRSILVVDATTGQNALQQAKLF 415 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 G +I+TK+DGTA+GG ++ I + H +P+ F+G+GE + DL PF KDF+ + G Sbjct: 416 GEAVGVDEIILTKLDGTAKGGIVVAIALEHALPITFVGLGEKMEDLRPFNGKDFAQALLG 475 Query: 313 C 313 Sbjct: 476 T 476 >gi|150021431|ref|YP_001306785.1| signal recognition particle-docking protein FtsY [Thermosipho melanesiensis BI429] gi|149793952|gb|ABR31400.1| signal recognition particle-docking protein FtsY [Thermosipho melanesiensis BI429] Length = 295 Score = 223 bits (567), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 128/304 (42%), Positives = 196/304 (64%), Gaps = 12/304 (3%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + + K KG T I +++S ++LD+ V+EE+E+LLI SD+GV + I++++ Sbjct: 1 MGFFEKFKKGLQKTRETFFGKIKEVLSGKKLDEEVKEEIEELLILSDVGVEATEYIIKKI 60 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 ++ S + D E + K+L+ LS + +P VI +VGVNG GKTT G Sbjct: 61 ------EESSGE----DAYETLKKVLVEMLSDNTELNLFEKPTVINMVGVNGSGKTTTAG 110 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ S G V+LAA DTFR+AAIDQLK+W +RT++ + + G+D+AA+A++A A Sbjct: 111 KLASYFSKNGKSVVLAACDTFRAAAIDQLKVWGERTNSTVIAHQEGADSAAVAFDAVNHA 170 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +K D++I+DTAGRLH LM + K+ RV+K+ APH +L V+DA TGQN L+Q Sbjct: 171 ISKNKDIVILDTAGRLHTKKNLMEELRKINRVIKKKLESAPHEILLVIDAVTGQNGLQQA 230 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF-SA 308 ++F TG+++TK+DGTA+GG I IV IP+ F+G+GEG++DL+PF A+DF +A Sbjct: 231 KIFKEFVNITGIVLTKLDGTAKGGIAIAIVKELGIPIKFVGLGEGVDDLKPFDAEDFVNA 290 Query: 309 VITG 312 ++ G Sbjct: 291 LLEG 294 >gi|258405800|ref|YP_003198542.1| signal recognition particle-docking protein FtsY [Desulfohalobium retbaense DSM 5692] gi|257798027|gb|ACV68964.1| signal recognition particle-docking protein FtsY [Desulfohalobium retbaense DSM 5692] Length = 444 Score = 223 bits (567), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 123/301 (40%), Positives = 178/301 (59%), Gaps = 13/301 (4%) Query: 16 KLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71 KL+ G T +L + + ++ +++ DD E+LE++LI SD+G ++E L + Sbjct: 148 KLSSGLTKTKEQLSKQVDQLLQLNKQFDDAFWEDLEEILIMSDVGFKATTTLLERLRDRV 207 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLS--KPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + D + L+ EL P KP P V+L++GVNGVGKTT I Sbjct: 208 RQEGCNDSETFKTLFK-EELAALFPQPAKRIKP------QPPEVVLMIGVNGVGKTTTIA 260 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KVM+AAGDTFR+AAI+QL+IW+ R A F SD A++AYEA A Sbjct: 261 KLAHRAHMQGQKVMVAAGDTFRAAAIEQLEIWSKRVGAGFYAKAPFSDPASVAYEALDTA 320 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 QA+ D L +DTAGRLH N LM + K+ RVL + P APH + VLDATTGQNAL Q Sbjct: 321 QAEGYDTLFVDTAGRLHTNVDLMEELRKIKRVLAKKHPGAPHRTILVLDATTGQNALSQT 380 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 ++F +++TK+DGTA+GG ++ + + + IP+ F+G+GE + DL PF DF+ Sbjct: 381 KLFAKDMDIDEIVLTKLDGTAKGGVVVAVSLEYGIPITFIGLGEKMEDLRPFSGTDFAQA 440 Query: 310 I 310 + Sbjct: 441 L 441 >gi|302874775|ref|YP_003843408.1| signal recognition particle-docking protein FtsY [Clostridium cellulovorans 743B] gi|307690609|ref|ZP_07633055.1| signal recognition particle-docking protein FtsY [Clostridium cellulovorans 743B] gi|302577632|gb|ADL51644.1| signal recognition particle-docking protein FtsY [Clostridium cellulovorans 743B] Length = 303 Score = 223 bits (567), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 120/297 (40%), Positives = 188/297 (63%), Gaps = 6/297 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + KL G T L E I ++ + +D+ + +ELE++LI +D+GV + I++EL Sbjct: 5 FFDKLKNGLNKTKENLTEKINVMLGNYISIDEDLFDELEEILITADVGVDTSMFIIDEL- 63 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PHVILVVGVNGVGKTTVIG 129 K+ K+ + V +V + ++++ + DF+ + P V+LV+GVNG GKTT IG Sbjct: 64 -KKKIKEERINEV-SEVYPALKRVIVEILGSTREDFTKQDTPKVMLVIGVNGAGKTTSIG 121 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 K+S K+ +G V++ A DTFR+AAIDQL++W+ R + + + GSD AA+ ++ + A Sbjct: 122 KMSAKLKKSGYNVLMIAADTFRAAAIDQLEVWSKRAEVEIIKHQEGSDPAAVVFDGVQAA 181 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ VD+L+ DTAGRLHN LM +GK+ R+++R HA L VLDA+TGQNA+ Q Sbjct: 182 KARNVDILLCDTAGRLHNKKNLMNELGKINRIIEREYGHAEKETLLVLDASTGQNAVSQA 241 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ + G+I+TK+DGTA+GG +I I IPV +GVGE I+DL+ F A +F Sbjct: 242 KQFNEICKVDGIILTKLDGTAKGGVVISIKHELNIPVKLIGVGESIDDLQEFDASEF 298 >gi|86133831|ref|ZP_01052413.1| signal recognition particle-docking protein FtsY [Polaribacter sp. MED152] gi|85820694|gb|EAQ41841.1| signal recognition particle-docking protein FtsY [Polaribacter sp. MED152] Length = 323 Score = 222 bits (566), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 123/279 (44%), Positives = 174/279 (62%), Gaps = 13/279 (4%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLM 97 ++DD V + LE++L+ SD+GV K+++ + R AKD V + + E I +L Sbjct: 40 KVDDDVLDNLEEVLVASDVGVNTTLKVIDRI-EARVAKDKYVGTDELNAILREEIAGLLS 98 Query: 98 PLSKPFNWDFS----------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 + DF+ P+V++VVGVNGVGKTT IGKL+ + GLKV+L A Sbjct: 99 ETNVGNETDFTIPEIPKKEGKKMPYVLMVVGVNGVGKTTTIGKLASQFKKQGLKVVLGAA 158 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DTFR+AAIDQL++WADRT + E+GSD A++A++ A + DV+IIDTAGRLHN Sbjct: 159 DTFRAAAIDQLQVWADRTDVPIIRQEMGSDPASVAFDTLTSAVKQDADVVIIDTAGRLHN 218 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 LM + K+ RV++++ APH VL VLD +TGQNA Q + F T L +TK+D Sbjct: 219 KVNLMNELTKIKRVMQKVVSDAPHDVLLVLDGSTGQNAFEQAKQFTKATEVTSLAVTKLD 278 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 GTA+GG +I I +IPV ++GVGEGI+DL+ F +F Sbjct: 279 GTAKGGVVIGISDQFQIPVKYIGVGEGIDDLQVFNKVEF 317 >gi|115352920|ref|YP_774759.1| signal recognition particle-docking protein FtsY [Burkholderia ambifaria AMMD] gi|115282908|gb|ABI88425.1| signal recognition particle-docking protein FtsY [Burkholderia ambifaria AMMD] Length = 386 Score = 222 bits (566), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 130/305 (42%), Positives = 185/305 (60%), Gaps = 13/305 (4%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 AS SW+ +L G A T IT + + ++D+ + EELE L+ SD GV + + Sbjct: 86 ASAKKSWLTRLKTGLAKTG----SSITGVFVNTKIDEDLYEELEAALLMSDAGVDATEYL 141 Query: 67 V----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + E++ T R V+ L+D L+ ++L PL K + +P V+++ GVNG Sbjct: 142 LGALREKVKTGRLTDPQQVKSALHD---LLVELLKPLEKSLMLGRA-QPLVMMITGVNGA 197 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K + V+LAAGDTFR+AA +QL +W +R + V E G D AA+ Sbjct: 198 GKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVI 256 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A A+A+K+DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TG Sbjct: 257 FDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTG 316 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL QV+ F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF Sbjct: 317 QNALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFN 376 Query: 303 AKDFS 307 A +F+ Sbjct: 377 AVEFA 381 >gi|304316936|ref|YP_003852081.1| signal recognition particle-docking protein FtsY [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778438|gb|ADL68997.1| signal recognition particle-docking protein FtsY [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 319 Score = 222 bits (566), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 128/294 (43%), Positives = 188/294 (63%), Gaps = 5/294 (1%) Query: 15 RKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 +KL G T I I+S R++DD + EELE++LI +D+GV +KI++ + K Sbjct: 23 QKLKDGLTRTRNNFTAKIDGILSLGRKIDDELFEELEEILILADVGVITTEKIIDNIKIK 82 Query: 74 RYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 + + + D+ +E I+ ++ KPFN P +IL+VGVNGVGKTT IGKL+ Sbjct: 83 AKEQKIKEADKIKDLLAEEIYNIMDANEKPFNI---TSPAMILIVGVNGVGKTTTIGKLA 139 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 K + G KV+L A DTFR+AAIDQL++WA R + + + E GSD A++ ++ K A+A+ Sbjct: 140 NKYKNEGKKVLLVAADTFRAAAIDQLEVWASRNNCEIIRHEEGSDPASVVFDGIKAAKAR 199 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 D+++ DTAGRLHN LM + K+ RV +R ++ L VLDATTGQNA++Q ++F Sbjct: 200 GADIILCDTAGRLHNKKNLMEELKKIYRVAQREFDNSNIETLLVLDATTGQNAVQQAKIF 259 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TG+I+TK+DGTA+GG +I I IPV F+GVGEGI+DL+ F ++ F Sbjct: 260 KEAVNVTGIILTKLDGTAKGGIVISIKSELDIPVRFIGVGEGIDDLQEFDSEKF 313 >gi|260592451|ref|ZP_05857909.1| signal recognition particle-docking protein FtsY [Prevotella veroralis F0319] gi|260535497|gb|EEX18114.1| signal recognition particle-docking protein FtsY [Prevotella veroralis F0319] Length = 316 Score = 222 bits (566), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 123/296 (41%), Positives = 181/296 (61%), Gaps = 6/296 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIV----EELL 71 L KG T + +T ++ + ++DD V + LE++L+ SD+GV KI+ E + Sbjct: 15 LDKGLEKTKQNVFTKLTRAVAGKSKVDDEVLDNLEEILVSSDVGVDTTIKIIHRIEERVA 74 Query: 72 TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +Y + +L +++EL+ + S + P+VILVVGVNGVGKTT IGK Sbjct: 75 RDKYVSTSELNEILKGEITELLTENNNGDSVEWTLPEESHPYVILVVGVNGVGKTTTIGK 134 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + AG KV L A DTFR+AA++Q++IW DR + ++G+D A++A++ + A+ Sbjct: 135 LAYQFKQAGKKVYLGAADTFRAAAVEQIQIWGDRVGVPVIKQQMGADPASVAFDTLQSAK 194 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A DV+IIDTAGRLHN LM + K+ V+K++ P APH VL VLD +TGQNA Q Sbjct: 195 ANGADVVIIDTAGRLHNKVGLMNELKKIKDVMKKVVPEAPHEVLLVLDGSTGQNAFEQAR 254 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F AV T L +TK+DGTA+GG +I I K+PV ++G+GEG+ DL+ F F Sbjct: 255 QFAAVTQITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQIFDKAQF 310 >gi|167771629|ref|ZP_02443682.1| hypothetical protein ANACOL_03001 [Anaerotruncus colihominis DSM 17241] gi|167666269|gb|EDS10399.1| hypothetical protein ANACOL_03001 [Anaerotruncus colihominis DSM 17241] Length = 309 Score = 222 bits (566), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 131/300 (43%), Positives = 187/300 (62%), Gaps = 9/300 (3%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L +G T + + I++S ++D+ + EELE+ LI SD+GVA + +I Sbjct: 1 MGFFGRLAEGLKKTRESMARKVDAIVNSFTKIDEELFEELEETLIMSDVGVATSAEICRR 60 Query: 70 L---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 L + +R D + R L + E+I ML + S +P ++LV+GVNGVGKTT Sbjct: 61 LRAAVKQRGVTDAAEVREL--IKEIIADML---AGGEALSISTKPSIVLVIGVNGVGKTT 115 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+ + G +V+L A DTFR+AAIDQL++WADR + V G+D AA+ ++A Sbjct: 116 TIGKLAASLKAQGKQVLLGAADTFRAAAIDQLQVWADRAGVEMVRQSEGADPAAVVFDAI 175 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 +A+ VDV+I DTAGRLHN LM + K+ RV++R P VL VLDATTGQNAL Sbjct: 176 TAGRARGVDVIICDTAGRLHNKKNLMDELSKISRVIQREAPGCDVEVLLVLDATTGQNAL 235 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q F AG TG+I+TK+DGTARGG +I I ++P+ ++GVGE ++DL PF A DF Sbjct: 236 NQARQFKEAAGITGIILTKLDGTARGGVVIGIRQELEVPIKYIGVGEQVDDLRPFNAADF 295 >gi|15838508|ref|NP_299196.1| cell division protein [Xylella fastidiosa 9a5c] gi|9107008|gb|AAF84716.1|AE004011_1 cell division protein [Xylella fastidiosa 9a5c] Length = 397 Score = 222 bits (566), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 118/269 (43%), Positives = 171/269 (63%), Gaps = 2/269 (0%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMP 98 RLD+ + +E+E LI +D+GV+ +V+ L + A++ + +Q +L + + +L P Sbjct: 117 RLDENLLDEIETALITADVGVSTTNALVDGLRKRMKAREFADIQTLLAALRNELIAILRP 176 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +SKP P V LVVGVNGVGKTT IGKL+K G +MLAAGDTFR+AA+ QL Sbjct: 177 VSKPLIVKRDALPFVFLVVGVNGVGKTTTIGKLAKWFKRDGYSLMLAAGDTFRAAAVAQL 236 Query: 159 KIWADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 + W +R S + + +DAA++ Y+A + A+A+ +VLI DTAGRLH LM + K Sbjct: 237 QAWGERNSITVIAQKGPNADAASVVYDALQAAKARSTEVLIADTAGRLHTQIGLMNELSK 296 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + RVL +LD APH VL V+D TTGQNAL Q+ FHA TGL++TK+DGTA+GG + Sbjct: 297 IRRVLGKLDSTAPHEVLMVIDGTTGQNALSQLRQFHAAVNVTGLVVTKLDGTAKGGVVFT 356 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + IP++F+ +GE + D+ F + F Sbjct: 357 LAREFGIPIHFISIGEQLEDMHFFDPEAF 385 >gi|218261904|ref|ZP_03476577.1| hypothetical protein PRABACTJOHN_02248 [Parabacteroides johnsonii DSM 18315] gi|218223698|gb|EEC96348.1| hypothetical protein PRABACTJOHN_02248 [Parabacteroides johnsonii DSM 18315] Length = 317 Score = 222 bits (566), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 128/297 (43%), Positives = 181/297 (60%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG + T + IT I+ + ++DD V + LE++LI SD+GV KI+ + R Sbjct: 15 LDKGLSKTKENVFSKITRAIAGKSKVDDEVLDNLEEVLITSDVGVDTTLKIISRI-EDRV 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLS----KPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 A+D V+ + + E I +L + F +P+VI+VVGVNGVGKTT IG Sbjct: 74 ARDKYVTTSELTAILREEIASLLTENHTEDLESFTVPEDKKPYVIMVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG V L A DTFR+AA++QL IW++R V ++GSD A++A++ A Sbjct: 134 KLAYQFKKAGKNVYLGAADTFRAAAVEQLVIWSERVGVPIVKQKMGSDPASVAFDTLSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A DV+IIDTAGRLHN LM + K+ V+K++ P APH VL VLD +TGQNA Q Sbjct: 194 KANGADVVIIDTAGRLHNKINLMNELTKIKNVMKKVVPDAPHEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F A L +TK+DGTA+GG +I I +IPV ++G+GEGI DL+ F K+F Sbjct: 254 KQFTAATEVNALAVTKLDGTAKGGVVIGISDHFRIPVKYIGLGEGIEDLQVFNRKEF 310 >gi|325280250|ref|YP_004252792.1| signal recognition particle-docking protein FtsY [Odoribacter splanchnicus DSM 20712] gi|324312059|gb|ADY32612.1| signal recognition particle-docking protein FtsY [Odoribacter splanchnicus DSM 20712] Length = 330 Score = 222 bits (566), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 121/277 (43%), Positives = 175/277 (63%), Gaps = 5/277 (1%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRVL-YDVS 89 ++ ++DD V + LE++LI SD+GV +I+E + + +Y + RVL ++ Sbjct: 48 VVGKSKVDDEVLDNLEEVLITSDVGVETTVRIIERIEERVQRDKYMGVDELNRVLKEEIV 107 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 L+ + + + F + P+VI+VVGVNGVGKTT IGKL+ K +AG KV+L A DT Sbjct: 108 ALLKENTVNDAASFELPENGVPYVIMVVGVNGVGKTTTIGKLAYKFKEAGKKVVLGAADT 167 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+AA+DQL IWADR V +G+D A++AY+ +A+A DV+IIDTAGRLHN Sbjct: 168 FRAAAVDQLVIWADRVGVPIVKQAMGADPASVAYDTLSKAKADGADVVIIDTAGRLHNKI 227 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 LM + K+ V+K++ P AP+ VL VLD +TGQNA Q + F L +TK+DGT Sbjct: 228 NLMNELTKIKNVMKKVLPEAPNEVLLVLDGSTGQNAYEQAKQFTLATEVNALAITKLDGT 287 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 A+GG +I I KIPV ++G+GE I DL+ F ++F Sbjct: 288 AKGGVVIGISDQFKIPVKYIGIGEKIEDLQVFNREEF 324 >gi|171320171|ref|ZP_02909233.1| signal recognition particle-docking protein FtsY [Burkholderia ambifaria MEX-5] gi|171094585|gb|EDT39637.1| signal recognition particle-docking protein FtsY [Burkholderia ambifaria MEX-5] Length = 386 Score = 222 bits (566), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 130/305 (42%), Positives = 184/305 (60%), Gaps = 13/305 (4%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 AS SW+ +L G A T IT + + ++D+ + EELE L+ SD GV + + Sbjct: 86 ASAKKSWLVRLKTGLAKTG----SSITGVFVNTKIDEDLYEELEAALLMSDAGVDATEYL 141 Query: 67 V----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + E++ T R V+ L+D L+ ++L PL K + P V+++ GVNG Sbjct: 142 LGALREKVRTGRLTDPQQVKSALHD---LLVELLKPLEKSLMLGRAQ-PLVMMITGVNGA 197 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K + V+LAAGDTFR+AA +QL +W +R + V E G D AA+ Sbjct: 198 GKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVI 256 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A A+A+K+DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TG Sbjct: 257 FDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTG 316 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL QV+ F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF Sbjct: 317 QNALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFS 376 Query: 303 AKDFS 307 A +F+ Sbjct: 377 AVEFA 381 >gi|170701094|ref|ZP_02892070.1| signal recognition particle-docking protein FtsY [Burkholderia ambifaria IOP40-10] gi|170133995|gb|EDT02347.1| signal recognition particle-docking protein FtsY [Burkholderia ambifaria IOP40-10] Length = 386 Score = 222 bits (566), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 130/305 (42%), Positives = 185/305 (60%), Gaps = 13/305 (4%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 AS SW+ +L G A T IT + + ++D+ + EELE L+ SD GV + + Sbjct: 86 ASAKKSWLVRLKTGLAKTG----SSITGVFVNTKIDEDLYEELEAALLMSDAGVDATEYL 141 Query: 67 V----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + E++ T R V+ L+D L+ ++L PL K + +P V+++ GVNG Sbjct: 142 LGALREKVKTGRLTDPQQVKSALHD---LLVELLKPLEKSLMLGRA-QPLVMMITGVNGA 197 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K + V+LAAGDTFR+AA +QL +W +R + V E G D AA+ Sbjct: 198 GKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVI 256 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A A+A+K+DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TG Sbjct: 257 FDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTG 316 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL QV+ F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF Sbjct: 317 QNALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFS 376 Query: 303 AKDFS 307 A +F+ Sbjct: 377 AVEFA 381 >gi|325983559|ref|YP_004295961.1| signal recognition particle-docking protein FtsY [Nitrosomonas sp. AL212] gi|325533078|gb|ADZ27799.1| signal recognition particle-docking protein FtsY [Nitrosomonas sp. AL212] Length = 341 Score = 222 bits (566), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 129/315 (40%), Positives = 192/315 (60%), Gaps = 11/315 (3%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 + ++ +ES+S+ KL +G + T L + ++ + ++D+ + EELE +L+ SDIGV Sbjct: 23 VESESPPAESISFASKLKQGLSRTRQNLGQQLSGLFGGGKIDEELYEELETILLTSDIGV 82 Query: 61 AVAQKIVEEL--LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118 +++E L KR A S+Q + + + E + ML PL++ + H+P VI++ G Sbjct: 83 NATHQLLENLRKQVKRNALTDSIQ-LKHALKESLIAMLEPLAQSLDTT-RHKPFVIMIAG 140 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--- 175 VNGVGKTT IGKL+K G V+LAAGDTFR+AA +QL W +R + + + Sbjct: 141 VNGVGKTTSIGKLAKFFQTQGHSVLLAAGDTFRAAAREQLIAWGERNNVTVIAPDSDPDK 200 Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 SD AA+ Y+A A+A+ +D+++ DTAGRL LM I K+ RV+ + P APH VL Sbjct: 201 KSDPAAVIYDAVNSAKARGIDIVLADTAGRLTTQLHLMEEIKKVKRVIAKAMPDAPHEVL 260 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV---VTHKIPVYFLGV 291 VLDA TGQNA+ QV F TGLI+TK+DGTA+GG + I + + F+GV Sbjct: 261 LVLDANTGQNAITQVSAFDDALNVTGLILTKLDGTAKGGVVAAIAGQYPENPPALRFIGV 320 Query: 292 GEGINDLEPFVAKDF 306 GEG++DL PF A++F Sbjct: 321 GEGLDDLRPFEAREF 335 >gi|300313432|ref|YP_003777524.1| signal recognition particle GTPase involved in cell division protein [Herbaspirillum seropedicae SmR1] gi|300076217|gb|ADJ65616.1| signal recognition particle GTPase involved in cell division protein [Herbaspirillum seropedicae SmR1] Length = 321 Score = 222 bits (566), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 126/296 (42%), Positives = 181/296 (61%), Gaps = 7/296 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW+ +L G + TS L T + R+D+ + EELE L+ SD GV Q +++EL Sbjct: 26 SWLSRLKAGLSKTSSNL----TTLFVGARIDEDLYEELESALLVSDAGVEATQWLLDELK 81 Query: 72 TKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K A+ ++ +V + L+ ++L PL +P +P V+++ GVNG GKTT IGK Sbjct: 82 KKVKAERLTEAAQVRTALRTLLIELLQPLQRPLVLG-RDKPLVMMIAGVNGAGKTTTIGK 140 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + G V+LAAGDTFR+AA +QL +W +R + + E G D AA+AY++ AQ Sbjct: 141 LALHLQAHGQSVLLAAGDTFRAAAREQLAVWGERNNVQVIAQESG-DPAAVAYDSVHSAQ 199 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ V+++DTAGRL LM + K+ RV+ + APH VL V+D TGQNAL QV+ Sbjct: 200 ARGTHVVMVDTAGRLPTQLHLMDELKKIKRVIGKAMHSAPHEVLLVIDGNTGQNALAQVK 259 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G TGL++TK+DGTA+GG L I T +P+YF+GVGE I DL+ F A +F Sbjct: 260 AFDDALGLTGLVVTKLDGTAKGGILAAIAKTRPVPLYFIGVGEQIEDLQAFNATEF 315 >gi|282881453|ref|ZP_06290127.1| signal recognition particle-docking protein FtsY [Prevotella timonensis CRIS 5C-B1] gi|281304679|gb|EFA96765.1| signal recognition particle-docking protein FtsY [Prevotella timonensis CRIS 5C-B1] Length = 316 Score = 222 bits (566), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 122/278 (43%), Positives = 176/278 (63%), Gaps = 7/278 (2%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELI 92 +I ++DD V + LE++LI SD+GV KI++ + +R +D VS + + E I Sbjct: 34 VIGKSKVDDEVLDNLEEVLITSDVGVDTTLKIIQRI-EERVERDKYVSTSELNAILREEI 92 Query: 93 HKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 +L N +S H+P+VILVVGVNGVGKTT IGKL+ + AG KV L A D Sbjct: 93 ATLLAENHSEDNESWSLPTDHQPYVILVVGVNGVGKTTTIGKLAYQFKQAGKKVYLGAAD 152 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 T+R+AA+DQ+ IW +R + ++GSD A++A++ + A+A DV++IDTAGRLHN Sbjct: 153 TYRAAAVDQIVIWGERVGVPVIKQQMGSDPASVAFDTLQSAKANHADVVLIDTAGRLHNK 212 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM + K+ V+K++ P AP VL VLD +TGQNA Q + F AV T L +TK+DG Sbjct: 213 VGLMNELKKIKEVMKKVLPQAPDEVLLVLDGSTGQNAFEQAKQFSAVTQITSLAITKLDG 272 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TA+GG +I I K+PV ++G+GE + DL+ F K+F Sbjct: 273 TAKGGVVIGISDQLKVPVKYIGLGEQMEDLQLFQRKEF 310 >gi|325197349|gb|ADY92805.1| signal recognition particle-docking protein FtsY [Neisseria meningitidis G2136] gi|325203177|gb|ADY98630.1| signal recognition particle-docking protein FtsY [Neisseria meningitidis M01-240355] Length = 421 Score = 222 bits (565), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 117/297 (39%), Positives = 183/297 (61%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G + K+ + + + ++D+ + EELE +LI SD+G+ + +++++ Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ ++A + A Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGE I+DL PF A+ F Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGESIDDLRPFDARAF 415 >gi|229918603|ref|YP_002887249.1| signal recognition particle-docking protein FtsY [Exiguobacterium sp. AT1b] gi|229470032|gb|ACQ71804.1| signal recognition particle-docking protein FtsY [Exiguobacterium sp. AT1b] Length = 341 Score = 222 bits (565), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 124/308 (40%), Positives = 186/308 (60%), Gaps = 8/308 (2%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K+ + + +K T+G T + D++ R +D+ +ELEDLLI++D+GV Sbjct: 9 EKLTTSTQEVSQKFTEGLTKTRDGFASAVNDLVYRFREVDEDFFDELEDLLIQADVGVTT 68 Query: 63 AQKIVEEL---LTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118 +VE+L + +R KD V+V+ L E++ L + VIL VG Sbjct: 69 TMDLVEDLKEEVKRRNLKDPVAVRDALV---EVVANRLQEDESDRELNMQDGLTVILFVG 125 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNGVGKTT IGKL+ ++ G VMLAAGDTFR+ AI+QL++W +R + GSD Sbjct: 126 VNGVGKTTTIGKLAHQLKSEGRSVMLAAGDTFRAGAIEQLQVWGERVGVPVIRQTEGSDP 185 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A + A+++ +DVLI DTAGRL N LM + K+ RV++R P+ PH VL LD Sbjct: 186 AAVVFDAVQAAKSRNMDVLICDTAGRLQNKVNLMKELEKVKRVIEREVPNGPHEVLLALD 245 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 ATTGQNA+ Q + F +G+++TK+DGTA+GG ++ I IPV ++G+GE I+DL Sbjct: 246 ATTGQNAMVQAKAFKEATNVSGIVLTKLDGTAKGGIVLAIRNELDIPVKYVGLGEKIDDL 305 Query: 299 EPFVAKDF 306 + F + F Sbjct: 306 QEFDPEQF 313 >gi|331002414|ref|ZP_08325932.1| signal recognition particle-docking protein FtsY [Lachnospiraceae oral taxon 107 str. F0167] gi|330410230|gb|EGG89664.1| signal recognition particle-docking protein FtsY [Lachnospiraceae oral taxon 107 str. F0167] Length = 309 Score = 222 bits (565), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 119/295 (40%), Positives = 179/295 (60%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L +G T + GI ++ + +D+ EELE+ LI DIG+ + I+EEL Sbjct: 8 FFSRLVEGLTKTRNAVVSGIENVFLGYDVIDEDFYEELEETLIMGDIGIRASTDIIEELR 67 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + + ++ DV K M L + ++F +R V+ V+GVNGVGKTT +GKL Sbjct: 68 KRVKDEHLTSPSQCKDVLIETIKQRMDLGENA-YEFENRKSVVFVIGVNGVGKTTSVGKL 126 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + ++ + G KV++ A DTFR+AAI+QL+ W R D + GSD A+ ++A K A+A Sbjct: 127 ASQLKNDGKKVLVVAADTFRAAAIEQLEEWTKRAGVDIIAQNEGSDPGAVVFDACKAAKA 186 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + DV+I+DTAGRLHN LM + K+ ++++R P A L VLD TTGQNAL Q + Sbjct: 187 RNTDVMIVDTAGRLHNKKNLMEELKKINKIIEREYPDAYRETLVVLDGTTGQNALEQARV 246 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ A TG+I+TK+DG+A+GG + I IPV ++GVGE I+DL F +K+F Sbjct: 247 FNEAANITGIILTKLDGSAKGGIAVAIQAELSIPVKYVGVGEKIDDLHKFNSKEF 301 >gi|289805648|ref|ZP_06536277.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 242 Score = 222 bits (565), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 104/213 (48%), Positives = 149/213 (69%), Gaps = 1/213 (0%) Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 ++L + +P N + P VIL+VGVNGVGKTT IGKL+++ G VMLAAGDTFR+A Sbjct: 22 EILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAA 80 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A++QL++W R + + G+D+A++ ++A + A+A+ VDVLI DTAGRL N S LM Sbjct: 81 AVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNVDVLIADTAGRLQNKSHLME 140 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++FH G TG+ +TK+DGTA+GG Sbjct: 141 ELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGG 200 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + + IP+ ++GVGE I DL PF A DF Sbjct: 201 VIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 233 >gi|189426542|ref|YP_001953719.1| signal recognition particle-docking protein FtsY [Geobacter lovleyi SZ] gi|189422801|gb|ACD97199.1| signal recognition particle-docking protein FtsY [Geobacter lovleyi SZ] Length = 342 Score = 222 bits (565), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 128/278 (46%), Positives = 179/278 (64%), Gaps = 12/278 (4%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIV---EELLTKRYAKDVSVQR-VLYDVSE 90 ++ + +D EELE++LI SDIGV +++ E+ L++ KD + R L D E Sbjct: 63 VLGKKEIDADTLEELEEILITSDIGVKTTVELIRSLEQRLSRNELKDGAALRGALKD--E 120 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 L+ ++L + P + + P ILVVGVNGVGKTT IGKL+ K + G KV+LAAGDTF Sbjct: 121 LLARLLAHHT-PLRLEGTA-PFTILVVGVNGVGKTTTIGKLAAKYAAEGRKVLLAAGDTF 178 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R+AA +QL+IW DR + + G+D +A+A++A K A ++ ++LIIDTAGRLH Sbjct: 179 RAAAAEQLEIWGDRAGVSVIRHQEGADPSAVAFDACKAAVSRGTEILIIDTAGRLHTKVN 238 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + K+ RV+ R P APH L VLD TGQNAL Q +F AG TG+ +TK+DGTA Sbjct: 239 LMEEMKKIHRVIGREIPGAPHETLLVLDGATGQNALSQARLFKESAGVTGIALTKLDGTA 298 Query: 271 RGGGLIPIVVTHK--IPVYFLGVGEGINDLEPFVAKDF 306 +GG I + V+H+ +PV F+GVGEGI+DL F +F Sbjct: 299 KGG--IVVAVSHEFGLPVRFIGVGEGIDDLREFEPNEF 334 >gi|71901777|ref|ZP_00683846.1| Cell division transporter substrate-binding protein FtsY [Xylella fastidiosa Ann-1] gi|71728460|gb|EAO30622.1| Cell division transporter substrate-binding protein FtsY [Xylella fastidiosa Ann-1] Length = 397 Score = 222 bits (565), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 117/269 (43%), Positives = 171/269 (63%), Gaps = 2/269 (0%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMP 98 RLD+ + +E+E LI +D+GV+ IV+ L + A++ + +Q +L + + +L P Sbjct: 117 RLDENLLDEIETALITADVGVSTTNAIVDGLRKRMKAREFADIQTLLAALRNELITILRP 176 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +SKP P V LVVGVNGVGKTT IGKL+K G +MLAAGDTFR+AA+ QL Sbjct: 177 VSKPLIVKRDALPFVFLVVGVNGVGKTTTIGKLAKWFKRDGYSLMLAAGDTFRAAAVAQL 236 Query: 159 KIWADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 + W +R S + + +DAA++ Y+A + A+A+ ++VLI DTAGRLH LM + K Sbjct: 237 QAWGERNSITVIAQKGPNADAASVVYDALQAAKARSIEVLIADTAGRLHTQIGLMNELSK 296 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + RVL +LD APH VL V+D TTGQNAL Q+ FH TG+++TK+DGTA+GG + Sbjct: 297 IRRVLGKLDSTAPHEVLMVIDGTTGQNALSQLRQFHVAVNVTGIVVTKLDGTAKGGVVFT 356 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + IP++F+ +GE + D+ F + F Sbjct: 357 LAREFGIPIHFISIGEQLEDMHFFDPEAF 385 >gi|225012679|ref|ZP_03703114.1| signal recognition particle-docking protein FtsY [Flavobacteria bacterium MS024-2A] gi|225003212|gb|EEG41187.1| signal recognition particle-docking protein FtsY [Flavobacteria bacterium MS024-2A] Length = 317 Score = 221 bits (564), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 132/299 (44%), Positives = 194/299 (64%), Gaps = 8/299 (2%) Query: 15 RKLTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 +KL G A+T + T ++ ++D+ V +ELE +LI+SD+GVA KI++ L Sbjct: 14 KKLEDGLANTKKSFLSRLGTAVVGKTKIDEDVLDELEAILIQSDVGVATTLKIIDAL-EA 72 Query: 74 RYAKD--VSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTV 127 R A+D + + ++ + E I ++L+ FN FS +PHV++VVGVNGVGKTT Sbjct: 73 RIARDKYLKTEDLIRMMQEEILELLVEADDDSRDGFNAKFSSKPHVVMVVGVNGVGKTTS 132 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 +GKL+ + G KV+L A DTFR+ AIDQL++WADR S V E+GSD A++A++ + Sbjct: 133 VGKLAHQYKTHGKKVILGAADTFRAGAIDQLQVWADRVSVPLVRQEMGSDPASVAFDTLQ 192 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+A++ D++ IDTAGRLHN LM + K+ RV+ ++ P APH VL VLD +TGQNA Sbjct: 193 SAKAQEADIVFIDTAGRLHNKINLMNELAKVKRVMSKVIPDAPHEVLLVLDGSTGQNAFE 252 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q + F A + L +TK+DGTA+GG L+ I +IPV ++GVGEGI D++ F K+F Sbjct: 253 QAKQFTAATEVSSLAITKLDGTAKGGVLLGISDQFQIPVKYIGVGEGIEDIQIFDRKEF 311 >gi|238021574|ref|ZP_04602000.1| hypothetical protein GCWU000324_01474 [Kingella oralis ATCC 51147] gi|237866188|gb|EEP67230.1| hypothetical protein GCWU000324_01474 [Kingella oralis ATCC 51147] Length = 542 Score = 221 bits (564), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 120/301 (39%), Positives = 184/301 (61%), Gaps = 14/301 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W +L +G + + + + + ++D+ + EELE +L+ SD+G+ ++++ E+ Sbjct: 243 WASRLKQGLTKSRNHMAKSLAGVFGGGQIDEDLYEELETVLLTSDMGIEATEQLMREV-- 300 Query: 73 KRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 +D + L D +EL ++ +L PL +P + P VI++ G+NG GKT Sbjct: 301 ----RDRVSLKGLKDGNELRQALKDAVYDLLKPLEQPLAIPENGAPFVIMLAGINGAGKT 356 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K G V+LAAGDTFR+AA +QL+ W +R V S+ D+AA+ ++A Sbjct: 357 TSIGKLAKYFQAQGKSVILAAGDTFRAAAREQLQEWGERNGV-TVISQAKGDSAAVCFDA 415 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + A+A+++D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA Sbjct: 416 VEAAKARQIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKSLPDAPHEIIVVLDANIGQNA 475 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + QV F G TGLI+TK+DGTA+GG L + + IPV ++GVGE I+DL PF AKD Sbjct: 476 VNQVVAFDDALGVTGLIVTKLDGTAKGGVLAALASSRAIPVRYIGVGESIDDLRPFNAKD 535 Query: 306 F 306 F Sbjct: 536 F 536 >gi|257439117|ref|ZP_05614872.1| signal recognition particle-docking protein FtsY [Faecalibacterium prausnitzii A2-165] gi|257198495|gb|EEU96779.1| signal recognition particle-docking protein FtsY [Faecalibacterium prausnitzii A2-165] Length = 312 Score = 221 bits (564), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 124/292 (42%), Positives = 181/292 (61%), Gaps = 4/292 (1%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 K+ G T I + ++ ++DD + +ELE+ LI +D+G VA K+V++L + Sbjct: 13 KMKDGLEKTRTGFWGNIMNTLTGSKIDDDLYDELEEQLILADVGGEVAIKLVDKLRDRVN 72 Query: 76 AKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K + ++ ++ +LI + P ++ D S P VIL++GVNGVGKTT I KL+ Sbjct: 73 EKGLKTGEQASDELRDLIADEMRPEAE---MDLSGMPAVILIIGVNGVGKTTSIAKLADF 129 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 + G KVMLAAGDTFR+AA +QL+IWADR V + G+D AA+ ++ K A A+ Sbjct: 130 YTRQGKKVMLAAGDTFRAAASEQLEIWADRAGVPLVKAGEGADPAAVIFDTVKSATARGY 189 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D++I DTAGRLHN + LMA + K+ R +K+ P A L VLDA TGQNA+ Q F Sbjct: 190 DLVIADTAGRLHNKANLMAELSKISRSVKKASPEASLETLLVLDAITGQNAISQAREFCK 249 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 A TG+I+TK+DGTA+GG ++ + +PV F+GVGEGI+DL PF + + Sbjct: 250 AANATGIILTKLDGTAKGGCVVAVKQRLGLPVRFIGVGEGIDDLIPFTPEGY 301 >gi|34499658|ref|NP_903873.1| cell division protein FtsY [Chromobacterium violaceum ATCC 12472] gi|34105508|gb|AAQ61863.1| cell division protein FtsY [Chromobacterium violaceum ATCC 12472] Length = 375 Score = 221 bits (564), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 123/313 (39%), Positives = 191/313 (61%), Gaps = 15/313 (4%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 + ++ V + +SW +L G A T KL + + + ++D+ + EELE +L+ +D+G+ Sbjct: 65 IPDEPVPLKKMSWTERLKAGLAKTRDKLGKQLAGLFGGGKIDEDLYEELETVLLTADMGM 124 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHV 113 + +++++ + VS+ + L D SEL + ++ PL P N + +P V Sbjct: 125 DATEHLLQDVRER-----VSL-KGLKDSSELKGALKDSLQDLIGPLEVPLNVE-GKKPFV 177 Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 I++ GVNG GKTT IGKL+K G V+LAAGDTFR+AA +QL W +R + + + Sbjct: 178 IMMTGVNGAGKTTSIGKLAKYYQSQGKSVLLAAGDTFRAAAREQLIAWGERNNVTVIAQQ 237 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 G D+AA+ Y+A + A A+ +D+++ DTAGRL LM I K+ RV+++ P APH V Sbjct: 238 -GGDSAAVCYDAIQAAIARGIDIVLADTAGRLPTQLHLMEEIKKVKRVIQKALPDAPHEV 296 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 + VLDA GQN + QV+ F G TGLI+TK+DGTA+GG + I IP+ F+GVGE Sbjct: 297 VLVLDANIGQNTVNQVKAFDDALGLTGLILTKLDGTAKGGVIAAIAKQRPIPLRFVGVGE 356 Query: 294 GINDLEPFVAKDF 306 I+DL PF ++D+ Sbjct: 357 SIDDLRPFDSRDY 369 >gi|3334298|sp|O30391|FTSY_NEIMC RecName: Full=Cell division protein ftsY homolog gi|2580590|gb|AAB97510.1| putative transcriptional regulator [Neisseria meningitidis] Length = 421 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 117/297 (39%), Positives = 183/297 (61%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G + K+ + + + ++D+ + EELE +LI SD+ + + +++++ Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMDMEATEYLMKDV 179 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ ++A + A Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415 >gi|293397906|ref|ZP_06642112.1| signal recognition particle receptor [Neisseria gonorrhoeae F62] gi|291611852|gb|EFF40921.1| signal recognition particle receptor [Neisseria gonorrhoeae F62] Length = 421 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 117/297 (39%), Positives = 183/297 (61%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G A + K+ + + + ++ + + EELE +LI D+G+ + +++++ Sbjct: 120 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 179 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 180 RGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ ++A + A Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQV 358 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415 >gi|242280173|ref|YP_002992302.1| signal recognition particle-docking protein FtsY [Desulfovibrio salexigens DSM 2638] gi|242123067|gb|ACS80763.1| signal recognition particle-docking protein FtsY [Desulfovibrio salexigens DSM 2638] Length = 675 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 122/298 (40%), Positives = 185/298 (62%), Gaps = 7/298 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73 KL++G T ++ + I ++SS DD EE E++LI +D+G + ++VE + + Sbjct: 379 KLSEGLNKTREQITKRIDSMLSSHTAFDDDFWEEFEEILIMADVGYDASMELVERMKERI 438 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 R A + + + + +L+ + L + K P + P V++++GVNGVGKTT I KL+ Sbjct: 439 RKAGETNPE----NFKDLLREELDEIFKVPKRIKAFNPPEVVMMIGVNGVGKTTTIAKLA 494 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 + G KV++ AGDTFR+AAI QL++WA R A F GSD AA+AYEA A Sbjct: 495 HRAQMQGRKVLIVAGDTFRAAAIGQLEVWARRVGAGFYAKAEGSDPAAVAYEAIDYAVKN 554 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 D++++DTAGRLHN + LM + K+ RVL + APH + V+DATTGQNAL Q ++F Sbjct: 555 GYDLMLLDTAGRLHNKANLMEELHKIRRVLGKKHDEAPHRSVLVIDATTGQNALSQTKIF 614 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 + G LI+TK+DGTA+GG +I + + HKIP+ +G+GE + DL PF +DF+ + Sbjct: 615 NEEIGVDELILTKLDGTAKGGVMIAVTMQHKIPITHIGLGEKMEDLRPFNGEDFAKAL 672 >gi|154250433|ref|YP_001411258.1| signal recognition particle-docking protein FtsY [Fervidobacterium nodosum Rt17-B1] gi|154154369|gb|ABS61601.1| signal recognition particle-docking protein FtsY [Fervidobacterium nodosum Rt17-B1] Length = 304 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 128/292 (43%), Positives = 186/292 (63%), Gaps = 10/292 (3%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + + KL G + I I+ ++ D REE+E+LLI +D+GV + I+E+L Sbjct: 1 MGFFDKLRDGLKKSRESFFNKIGQILKFKKFDKETREEIEELLILADVGVEATEYIIEKL 60 Query: 71 LTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + S ++ +L D+ + +++ +P KPF VI +VGVNG GKTT G Sbjct: 61 EEMKPEDAFSALKEILVDILKGKNELNVPSEKPF---------VISLVGVNGSGKTTTCG 111 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ G +V++ A DTFR+AAIDQL++WADR+ A F+ G+DAAA+AY+A A Sbjct: 112 KLASMFRGEGKQVVIGACDTFRAAAIDQLRVWADRSGATFIAHMEGADAAAVAYDAVNHA 171 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +K DV+++DTAGRLHN LM + K+ RV+++L P+APH VL VLDA TGQN L+Q Sbjct: 172 ISKGKDVVLLDTAGRLHNKKHLMDELQKVNRVIQKLMPNAPHEVLLVLDAVTGQNGLQQA 231 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 ++F V TG+++TK+DGTA+GG I I IP+ F+GVGEGI+DL+PF Sbjct: 232 KIFKEVVNVTGIVLTKLDGTAKGGIAIAIAKELGIPIKFIGVGEGIDDLKPF 283 >gi|229825031|ref|ZP_04451100.1| hypothetical protein GCWU000182_00381 [Abiotrophia defectiva ATCC 49176] gi|229790778|gb|EEP26892.1| hypothetical protein GCWU000182_00381 [Abiotrophia defectiva ATCC 49176] Length = 304 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 116/298 (38%), Positives = 182/298 (61%), Gaps = 4/298 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + KL +G + T + +++I + + DD EELE+ LI +D+G++ ++E Sbjct: 1 MGFFSKLAEGLSKTRNNIMNSVSNIFTGHDIIDDDFYEELEETLIMADLGISTTTSVIEN 60 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L K K++ ++ L+ + + KP +DF ++ V+L++GVNGVGKTT + Sbjct: 61 LKAK--VKELKIKDPADCKKHLMDSLKEQMQVKPDAYDFENKKSVVLMIGVNGVGKTTSV 118 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ ++ ++G KV++AA DTFR+ AI+QL WA R+ + + + GSD AA+ ++A Sbjct: 119 GKLASQLKNSGKKVLVAAADTFRAGAIEQLTEWARRSDVELIAQKEGSDPAAVVFDAVNA 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ VDVLI DTAGRLHN LM + K+ R++ + P A L V+D TTGQNA Q Sbjct: 179 AKARNVDVLICDTAGRLHNKKNLMDELNKIYRIIGKEFPEAAIETLVVVDGTTGQNAKEQ 238 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F A G+++TK+DGTA+GG I I IPV ++G+GE I+DL+ F A+ F Sbjct: 239 ARQFSEAAPVNGIVLTKLDGTAKGGIAIAIESELSIPVKYIGIGEQIDDLQKFDAEQF 296 >gi|282858817|ref|ZP_06267962.1| signal recognition particle-docking protein FtsY [Prevotella bivia JCVIHMP010] gi|282588386|gb|EFB93546.1| signal recognition particle-docking protein FtsY [Prevotella bivia JCVIHMP010] Length = 317 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 119/272 (43%), Positives = 176/272 (64%), Gaps = 7/272 (2%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMP 98 +DD V + LE++L+ SD+GV KI+ + +R A+D VS + + I ++L Sbjct: 40 VDDDVLDNLEEILVTSDVGVDTTIKIIRRI-EERVARDKYVSTSELNGILKSEIAELLTE 98 Query: 99 LSKPF--NWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 + NW+ +P+VILVVGVNGVGKTT IGKL+ + AG KV L A DTFR+AA Sbjct: 99 NNTESLGNWELPTDKKPYVILVVGVNGVGKTTTIGKLAYQFKQAGKKVYLGAADTFRAAA 158 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 ++Q+ IW +R V ++G+D A++A++ + A+A + DV++IDTAGRLHN LM Sbjct: 159 VEQISIWGERVGVPVVKQQMGADPASVAFDTLQSARANEADVVLIDTAGRLHNKVNLMNE 218 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + K+ V+K++ P APH V+ VLD +TGQNA Q + F AV T L +TK+DGTA+GG Sbjct: 219 LKKIKEVMKKVMPDAPHEVMLVLDGSTGQNAFEQAKQFAAVTQITSLAITKLDGTAKGGV 278 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +I I K+PV ++G+GEG+ DL+ F ++F Sbjct: 279 VIGISDQLKVPVKYIGLGEGMEDLQLFNKEEF 310 >gi|291515239|emb|CBK64449.1| signal recognition particle-docking protein FtsY [Alistipes shahii WAL 8301] Length = 332 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 185/311 (59%), Gaps = 11/311 (3%) Query: 16 KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIV----EEL 70 +L+ G T L + ++ R +D GV ++LE++LI SD+GV KI+ E + Sbjct: 26 ELSAGLEKTKTGLFSKLARAVAGRSTIDAGVLDDLEEVLISSDVGVETTVKIIRRIEERV 85 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIG 129 +Y +Q +L + + S+ F D + +P+V++VVGVNG GKTT IG Sbjct: 86 ARDKYMNASELQSILRGEIATLMEDAHGSSENFGLDATEGQPYVVMVVGVNGAGKTTTIG 145 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ ++ AG KV + A DTFR+AAIDQL++WADR A + ++GSD A++A++ A Sbjct: 146 KLAAQLGKAGRKVWIGAADTFRAAAIDQLQVWADRAGATMIRQQMGSDPASVAFDTLTSA 205 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A DV++IDTAGRLHN LM + K+ V+ ++ P APH V+ VLD +TGQNA Q Sbjct: 206 KANGADVVLIDTAGRLHNKVGLMNELTKIRNVMGKVIPGAPHEVMLVLDGSTGQNAFEQA 265 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F T L +TK+DGTA+GG +I I IPV ++G+GEGI+ L F K+F Sbjct: 266 KQFTQATQVTSLTITKLDGTAKGGVVIGISDQFHIPVRYIGIGEGIDQLRIFDRKEFVNA 325 Query: 310 ITGCLDYGEEK 320 + +G EK Sbjct: 326 L-----FGHEK 331 >gi|298209272|ref|YP_003717451.1| recognition particle-docking protein FtsY [Croceibacter atlanticus HTCC2559] gi|83849199|gb|EAP87068.1| recognition particle-docking protein FtsY [Croceibacter atlanticus HTCC2559] Length = 317 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 120/273 (43%), Positives = 173/273 (63%), Gaps = 7/273 (2%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLM 97 ++DD V +ELE++L+ SD+GV KI++ + +R AKD + + + E I +L Sbjct: 40 KVDDDVLDELEEILVASDVGVTTTIKIIKRI-EERVAKDKYLGTDELNLILREEIAGLLS 98 Query: 98 PLSKPFNWDF----SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 F +P+VI+VVGVNGVGKTT IGKL+ + G V+L A DTFR+A Sbjct: 99 ETETDSKLGFHIPEGKKPYVIMVVGVNGVGKTTTIGKLAHQFKSQGKNVVLGAADTFRAA 158 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 AIDQL++WADRT V ++GSD A++A+E ++A + DV+++DTAGRLHN LM Sbjct: 159 AIDQLQVWADRTGVPIVKQQMGSDPASVAFETVQEAVKQNADVVLVDTAGRLHNKVNLMN 218 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + K+ RV++++ + P VL VLD +TGQNA Q + F A T L +TK+DGTA+GG Sbjct: 219 ELSKVKRVMQKVADNVPDEVLLVLDGSTGQNAFEQAKQFTAATEVTSLAITKLDGTAKGG 278 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +I I +IPV ++GVGEGI DL+ F +F Sbjct: 279 VVIGISDQFQIPVKYIGVGEGIEDLQAFDKFEF 311 >gi|288818714|ref|YP_003433062.1| signal recognition particle [Hydrogenobacter thermophilus TK-6] gi|288788114|dbj|BAI69861.1| signal recognition particle [Hydrogenobacter thermophilus TK-6] gi|308752301|gb|ADO45784.1| signal recognition particle-docking protein FtsY [Hydrogenobacter thermophilus TK-6] Length = 461 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 122/295 (41%), Positives = 182/295 (61%), Gaps = 4/295 (1%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+I K+ KG T K GI I+ R++D+ + EELE+ L+R+DIG A +VEEL Sbjct: 162 SFIEKIRKGLQKTKEKALFGI--ILRGRKVDEALFEELEETLVRADIGAKTAINVVEELK 219 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + +++ L D+ + L+ + + ++ L +GVNG GKTT IGKL Sbjct: 220 KEAIKRNIKESEGLRDLLKEKLSSLLTGCQDNIKVKEGKTNIYLFLGVNGSGKTTTIGKL 279 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K G +V+L A DTFRSAA++QL++WA R+ AD V E G+D A++ ++A K+A Sbjct: 280 AYKFVSEGKRVLLCAADTFRSAAVEQLEVWAKRSGADIVKREEGADPASVVFDAMKRAS- 338 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +++IDTAGRLH L+ + K+ V++R P P VLDAT GQN++ Q ++ Sbjct: 339 -EYHLVLIDTAGRLHTKEPLIRELRKIKSVIQRFYPEEPTETFLVLDATLGQNSISQAKV 397 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F TG+I+TK+DGTA+GG +IPI K+PV LGVGEG++DL+PF A+ F Sbjct: 398 FKEAVDITGIILTKLDGTAKGGAIIPICRELKVPVKLLGVGEGLDDLQPFDAEVF 452 >gi|313888464|ref|ZP_07822131.1| signal recognition particle-docking protein FtsY [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845493|gb|EFR32887.1| signal recognition particle-docking protein FtsY [Peptoniphilus harei ACS-146-V-Sch2b] Length = 491 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 122/307 (39%), Positives = 183/307 (59%), Gaps = 12/307 (3%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 S ++L +G T ++ I ++ + ++DD + E+LED+LI +DIG+ K+++ L Sbjct: 191 SLFQRLKEGLDKTRKEVGIKINTVLGAYVKIDDEMLEDLEDILISADIGMETTMKLIDNL 250 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF-----SHRPHVILVVGVNGVGKT 125 ++ ++ + D E+ ++ K N + + P +ILVVGVNGVGKT Sbjct: 251 ------RETIIREKINDPQEVKPLLMAEAKKLMNPELNTPIKTEPPVIILVVGVNGVGKT 304 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKLS + G V++ A DTFR+AAIDQLK W +R D + GSD AA+ ++A Sbjct: 305 TTIGKLSSRFKREGKSVLVCAADTFRAAAIDQLKEWGNRAHVDIISHAEGSDPAAVVFDA 364 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + A+A+K DVLI+DTAGRLHN S LM + K+ R++ P A L VLD+TTGQNA Sbjct: 365 IEAAKARKTDVLIVDTAGRLHNKSNLMKELEKINRIISNKFPEANRENLLVLDSTTGQNA 424 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + Q + F TG+ +TK+DGTA+GG ++ + IP+ +GVGEGI+DL+ F + Sbjct: 425 INQAKTFREATDITGIALTKLDGTAKGGVVVALQSELGIPIKLIGVGEGIDDLQDFNIDN 484 Query: 306 FSAVITG 312 F I G Sbjct: 485 FLETIFG 491 >gi|154492268|ref|ZP_02031894.1| hypothetical protein PARMER_01902 [Parabacteroides merdae ATCC 43184] gi|154087493|gb|EDN86538.1| hypothetical protein PARMER_01902 [Parabacteroides merdae ATCC 43184] Length = 317 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG + T + IT I+ + ++DD V + LE++LI SD+GV KI+ + R Sbjct: 15 LDKGLSKTKENVFSKITRAIAGKSKVDDEVLDNLEEVLITSDVGVDTTLKIISRI-EDRV 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLS----KPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 A+D V+ + + E I +L + F +P+VI+VVGVNGVGKTT IG Sbjct: 74 ARDKYVTTSELTAILREEIASLLTENHTEDLESFTVPEDKKPYVIMVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG V L A DTFR+AA++QL IW++R V ++GSD A++A++ A Sbjct: 134 KLAYQFKKAGKNVYLGAADTFRAAAVEQLVIWSERVGVPIVKQKMGSDPASVAFDTLSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A DV+IIDTAGRLHN LM + K+ V+K++ P APH VL VLD +TGQNA Q Sbjct: 194 KANGADVVIIDTAGRLHNKINLMNELTKIKNVMKKVVPDAPHEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F A L +TK+DGTA+GG +I I +IPV ++G+GEG+ DL+ F K+F Sbjct: 254 KQFTAATEVNALAVTKLDGTAKGGVVIGISDHFRIPVKYIGLGEGMEDLQVFNRKEF 310 >gi|94970363|ref|YP_592411.1| signal recognition particle-docking protein FtsY [Candidatus Koribacter versatilis Ellin345] gi|94552413|gb|ABF42337.1| signal recognition particle-docking protein FtsY [Candidatus Koribacter versatilis Ellin345] Length = 320 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 122/296 (41%), Positives = 178/296 (60%), Gaps = 3/296 (1%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 +++ + T L E I D + R +DD ELE LI +D+G ++++ L Sbjct: 19 FQRMKEAVTRTRESLTERIEDAVGVRPEIDDYTLNELELTLIAADLGSVTTAEVLQALKD 78 Query: 73 KRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K K V + V +E++ + +K P VILVVGVNG GKTT IGK Sbjct: 79 KVDRKQVQSTDEIKGVLKAEILRLLNEAAAKSPVRTVDQPPEVILVVGVNGTGKTTTIGK 138 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 LS + G +V+L A DTFR+AAIDQL++W +RT + + ++ G D +A+ ++A + A+ Sbjct: 139 LSNLLRAQGKQVLLCAADTFRAAAIDQLEVWGERTGVEVIKTKPGGDPSAVLFDALQAAK 198 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ VD +I+DTAGRLH LM + KM R ++ P APH VL V+DATTGQN L+Q + Sbjct: 199 ARAVDYVIVDTAGRLHTKQNLMLELEKMKRTAQKFIPSAPHEVLLVMDATTGQNGLQQAK 258 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F AG TG+++TK+DGTA+GG ++ I +PV ++GVGE I D+ PF A DF Sbjct: 259 LFTESAGVTGIVLTKLDGTAKGGVVVAISRELGLPVRYVGVGEKIGDILPFNANDF 314 >gi|319779122|ref|YP_004130035.1| cell division protein [Taylorella equigenitalis MCE9] gi|317109146|gb|ADU91892.1| cell division protein [Taylorella equigenitalis MCE9] Length = 521 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 126/312 (40%), Positives = 192/312 (61%), Gaps = 17/312 (5%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 SE W +L KG + ++L I R+D+ + EELE+ L+ +D GV QKI+ Sbjct: 220 SEKKGWFSRLKKGLSRSNL------GSIFVGTRIDEELFEELENSLLMADAGVIATQKII 273 Query: 68 EEL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 EL + K++ +D +V + ++++I + L PL K F+ R +V+++ GVNG GK Sbjct: 274 SELRQAVKKQHLEDAD--QVKHALTQIIAQHLKPLEKIFDI-HEDRTNVVMIAGVNGAGK 330 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+ G ++LAAGDTFR+AA +QL+ W + + V S+ G D A++A++ Sbjct: 331 TTSIGKLAYHFQAHGASLLLAAGDTFRAAAREQLQQWGLKNNVQ-VISQQGGDPASVAFD 389 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A AKK V++IDTAGRL + LM + K+ RV+ + + APH VL V+D TGQN Sbjct: 390 AVNSGIAKKTTVVMIDTAGRLPTQTHLMEELKKIKRVITKAESSAPHEVLLVVDGNTGQN 449 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV----THKIPVYFLGVGEGINDLEP 300 AL Q++ F G TGL++TK+DGTA+GG L+ + +PVY++GVGE + DL+P Sbjct: 450 ALAQIKAFDEAIGLTGLLVTKLDGTAKGGVLVAMASGVQGVRTVPVYWIGVGESLEDLQP 509 Query: 301 FVAKDFSAVITG 312 FVA++F+ + G Sbjct: 510 FVAEEFAQALVG 521 >gi|313159547|gb|EFR58910.1| signal recognition particle-docking protein FtsY [Alistipes sp. HGB5] Length = 336 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 126/317 (39%), Positives = 182/317 (57%), Gaps = 6/317 (1%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGV 60 S + + E +L G T L + ++ R +D V ++LE++LI SD+GV Sbjct: 14 SAAQASEERKQQQEELNAGLEKTKTGLFSKLARAVAGRSTVDADVLDDLEEVLISSDVGV 73 Query: 61 AVAQKIV----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVIL 115 KI+ E + +Y +Q +L + + + K F D P+V++ Sbjct: 74 ETTVKIIRGIEERVARDKYMGTSELQSILREEVTALMEESHGSEKHFGLDAKEGEPYVVM 133 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VVGVNG GKTT IGKL+ +++ AG KV + A DTFR+AAIDQLK+WADR A + E+G Sbjct: 134 VVGVNGAGKTTTIGKLAAQLTKAGQKVWIGAADTFRAAAIDQLKVWADRAGATMIRQEMG 193 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD A++A++ A+A DV++IDTAGRLHN LM + K+ V+ ++ P APH V+ Sbjct: 194 SDPASVAFDTLTSAKANGADVVLIDTAGRLHNKINLMNELTKIRNVMGKVIPGAPHEVML 253 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 VLD +TGQNA Q F T L +TK+DGTA+GG +I I IPV ++G+GEGI Sbjct: 254 VLDGSTGQNAFEQARQFTQATQVTSLTITKLDGTAKGGVVIGISDQFHIPVRYIGIGEGI 313 Query: 296 NDLEPFVAKDFSAVITG 312 + L F K+F + G Sbjct: 314 DQLRIFDRKEFVKALFG 330 >gi|291524526|emb|CBK90113.1| signal recognition particle-docking protein FtsY [Eubacterium rectale DSM 17629] Length = 313 Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 121/296 (40%), Positives = 179/296 (60%), Gaps = 4/296 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + ++L G T + GI + S +DD EELE++LI D+GV + I+E+L Sbjct: 10 FFKRLVSGLTKTRDNIVSGIDSLFSGFSHIDDDFYEELEEILIMGDLGVRATENIIEDL- 68 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +R K+ ++ LI + + + + F + V+LV+GVNGVGKTT +GK Sbjct: 69 -QRKVKEQHIKEPAECKELLIESIKEQMKVEETAYRFENEKSVVLVIGVNGVGKTTTVGK 127 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K+ + G KV++A DTFR+AA DQLK WA+R D + G+D A+ Y+A ++ Sbjct: 128 LAGKLKEQGKKVVIAGADTFRAAAGDQLKEWANRAGVDMIGGAEGADPGAVVYDAVAASK 187 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ DVL++DTAGRLHN LM +GK+ ++L+ P A L VLDATTGQNAL Q Sbjct: 188 ARNADVLLVDTAGRLHNKKNLMNELGKINKILESEYPDAYRETLVVLDATTGQNALVQAR 247 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F VA +G+++TKMDGTA+GG + I +PV ++GVGE I+DL+ F + +F Sbjct: 248 EFSDVAKISGIVLTKMDGTAKGGIAVAIQSELSVPVKYIGVGETIDDLQKFDSDEF 303 >gi|294500963|ref|YP_003564663.1| signal recognition particle-docking protein FtsY [Bacillus megaterium QM B1551] gi|295706309|ref|YP_003599384.1| signal recognition particle-docking protein FtsY [Bacillus megaterium DSM 319] gi|294350900|gb|ADE71229.1| signal recognition particle-docking protein FtsY [Bacillus megaterium QM B1551] gi|294803968|gb|ADF41034.1| signal recognition particle-docking protein FtsY [Bacillus megaterium DSM 319] Length = 332 Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 134/312 (42%), Positives = 197/312 (63%), Gaps = 14/312 (4%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K+ ++ S +K G + T E + D++S R++D+ EELE++LI +D+GVA Sbjct: 9 EKITMQTDSVTQKFKDGLSKTRNSFSERVNDLVSRYRQVDEEFFEELEEILISADVGVAT 68 Query: 63 AQKIVEEL---LTKRYAKDVS-VQRV----LYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114 ++++L + +R KD VQ V L D+ E + + L+ N D + VI Sbjct: 69 VLDLIDDLKSEVKRRNIKDPQDVQAVISEKLIDIYESGEEQIGELNMQQN-DLT----VI 123 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 L VGVNGVGKTT IGK++ K G KV++AAGDTFR+ AI+QL++W +R D + Sbjct: 124 LFVGVNGVGKTTTIGKIAHKFKQEGKKVVMAAGDTFRAGAIEQLEVWGERVGVDVIKQSA 183 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 GSD AA+ Y+A + A+A+K DVL+ DTAGRL N LM + K+ RV++R P APH VL Sbjct: 184 GSDPAAVMYDAVQSAKARKADVLLCDTAGRLQNKVNLMKELEKVKRVIEREIPGAPHEVL 243 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VLDATTGQNAL Q + F TG+++TK+DGTA+GG ++ I K+PV F+G+GE Sbjct: 244 LVLDATTGQNALSQAKTFSEATNVTGIVLTKLDGTAKGGIVLAIRNELKLPVKFVGLGEK 303 Query: 295 INDLEPFVAKDF 306 ++DL+PF + + Sbjct: 304 VDDLQPFDTEQY 315 >gi|238923874|ref|YP_002937390.1| cell division protein FtsY [Eubacterium rectale ATCC 33656] gi|238875549|gb|ACR75256.1| cell division protein FtsY [Eubacterium rectale ATCC 33656] Length = 313 Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 121/296 (40%), Positives = 179/296 (60%), Gaps = 4/296 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + ++L G T + GI + S +DD EELE++LI D+GV + I+E+L Sbjct: 10 FFKRLVSGLTKTRDNIVSGIDSLFSGFSHIDDDFYEELEEILIMGDLGVRATESIIEDL- 68 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +R K+ ++ LI + + + + F + V+LV+GVNGVGKTT +GK Sbjct: 69 -QRKVKEQHIKEPAECKELLIESIKEQMKVEETAYRFENEKSVVLVIGVNGVGKTTTVGK 127 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K+ + G KV++A DTFR+AA DQLK WA+R D + G+D A+ Y+A ++ Sbjct: 128 LAGKLKEQGKKVVIAGADTFRAAAGDQLKEWANRAGVDMIGGAEGADPGAVVYDAVAASK 187 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ DVL++DTAGRLHN LM +GK+ ++L+ P A L VLDATTGQNAL Q Sbjct: 188 ARNADVLLVDTAGRLHNKKNLMNELGKINKILESEYPDAYRETLVVLDATTGQNALVQAR 247 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F VA +G+++TKMDGTA+GG + I +PV ++GVGE I+DL+ F + +F Sbjct: 248 EFSDVAKISGIVLTKMDGTAKGGIAVAIQSELSVPVKYIGVGETIDDLQKFDSDEF 303 >gi|332184708|gb|AEE26962.1| Signal recognition particle receptor protein FtsY (alpha subunit) [Francisella cf. novicida 3523] Length = 331 Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 125/308 (40%), Positives = 187/308 (60%), Gaps = 14/308 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +L G + T+ K G++ I+ +++ D+ + E++E L+ +D+GV +IV Sbjct: 30 RLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEATDEIV------T 83 Query: 75 YAKDVSVQRVLYDVSELIHKMLM-------PLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 Y +D + L +L + P KP D P VILVVGVNGVGKTT Sbjct: 84 YLRDQVARNELQTADKLNQIIKEKLIEIILPCEKPLEIDTQKSPFVILVVGVNGVGKTTT 143 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+KK+ G V+LAAGDTFR+AA++QL+ W DR + V G+D+A++ Y+A Sbjct: 144 IGKLTKKLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTQVVYQHEGADSASVIYDAIS 203 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A++K + V+I DTAGRLHN LM + K+++V+K+ D APH ++ V+DATTG NAL Sbjct: 204 SAKSKGIGVVIADTAGRLHNKDNLMQELKKVVKVIKKTDGTAPHEIMLVVDATTGGNALS 263 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 Q E F+ + TG+ +TK+DGTA+GG + I +P+ F+GVGE I+DL+ F A+DF+ Sbjct: 264 QAEAFNQIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQIFNARDFT 323 Query: 308 AVITGCLD 315 + D Sbjct: 324 TALFNSND 331 >gi|240126587|ref|ZP_04739473.1| putative signal recognition particle protein [Neisseria gonorrhoeae SK-92-679] gi|268685164|ref|ZP_06152026.1| signal recognition particle protein [Neisseria gonorrhoeae SK-92-679] gi|268625448|gb|EEZ57848.1| signal recognition particle protein [Neisseria gonorrhoeae SK-92-679] Length = 417 Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 117/297 (39%), Positives = 182/297 (61%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G A + K+ + + + ++ + + EELE +LI D+G+ + +++++ Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 176 RGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W R + V S+ D+AA+ ++A + A Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVT-VISQTAGDSAAVCFDAVQAA 294 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 295 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQV 354 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F Sbjct: 355 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 411 >gi|332884206|gb|EGK04474.1| signal recognition particle-docking protein FtsY [Dysgonomonas mossii DSM 22836] Length = 317 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 116/259 (44%), Positives = 165/259 (63%), Gaps = 7/259 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQR------VLYDVSELIHKMLMPLSKPFNWDF 107 I SD+GV KI+E + KR AKD + + +++ L+ + ++ F+ Sbjct: 53 ITSDVGVNTTLKIIERI-EKRVAKDKYINTDELNSILREEIAHLLTENNTTDTEGFSTPE 111 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 +H+P+VI+VVGVNGVGKTT IGKL+ + AG V L A DTFR+AA++QL IW +R Sbjct: 112 NHKPYVIMVVGVNGVGKTTTIGKLANQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVGV 171 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + +GSD A++A++ A+A DV+IIDTAGRLHN LM + K+ +V++++ P Sbjct: 172 PVIKQAMGSDPASVAFDTLSSAKANNADVVIIDTAGRLHNKVGLMNELTKIKKVMEKIVP 231 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 APH VL VLD +TGQNA Q F A T L +TK+DGTA+GG +I I KIPV Sbjct: 232 EAPHEVLLVLDGSTGQNAFEQATQFTAATDVTALAITKLDGTAKGGVVIGISDQFKIPVK 291 Query: 288 FLGVGEGINDLEPFVAKDF 306 ++G+GEGI+DL+ F K+F Sbjct: 292 YIGLGEGIDDLQVFTRKEF 310 >gi|269468214|gb|EEZ79907.1| cell division protein FtsY [uncultured SUP05 cluster bacterium] Length = 281 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 114/254 (44%), Positives = 165/254 (64%), Gaps = 3/254 (1%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPH 112 I +DIG+ K++E + K + LY + + + K+L+ N + + Sbjct: 24 ITADIGINTTDKVLESVRKNASRKILKNSDSLYQFLKDELRKLLID-DNQLNINV-NSTF 81 Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 VILVVGVNG GKTT IGKL+K + G VMLAAGDTFR+AA++QLK+W +R V Sbjct: 82 VILVVGVNGAGKTTTIGKLAKSFQNQGKSVMLAAGDTFRAAAVEQLKVWGERNEIPVVAQ 141 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 + G+DAA++ Y+A++ A+AK +D+LI DTAGRLH LM + K+ RVLK+ + +APH Sbjct: 142 DTGADAASVIYDAYESAKAKNIDILIADTAGRLHTQGNLMQELEKIKRVLKKHNENAPHE 201 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 + V+D +GQNA+ Q + F+ G +G+ +TK+DGTA+GG + I K+PV ++GVG Sbjct: 202 TMLVIDGGSGQNAINQAKEFNKTIGLSGICITKLDGTAKGGVVFAISDELKLPVRYIGVG 261 Query: 293 EGINDLEPFVAKDF 306 EGINDL+PF AK F Sbjct: 262 EGINDLKPFNAKKF 275 >gi|120436587|ref|YP_862273.1| cell division protein FtsY [Gramella forsetii KT0803] gi|117578737|emb|CAL67206.1| cell division protein FtsY [Gramella forsetii KT0803] Length = 317 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 121/296 (40%), Positives = 181/296 (61%), Gaps = 6/296 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIV----EELL 71 L KG + + ++ ++ + ++D+ V ++LE++L+ SD+GV KI+ E + Sbjct: 16 LDKGLEKSKTSFFDKMSKAVAGKDKVDEEVLDDLENVLVSSDVGVTTTIKIINRIEERVA 75 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +Y + ++L + ++ L+ + +P+VI+VVGVNGVGKTT IGK Sbjct: 76 RDKYLGTDELNKILREEIAALLSETNTGEGSEIQIPSDKKPYVIMVVGVNGVGKTTTIGK 135 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + G KV+L A DTFR+AAIDQL+IWADRT + ++GSD A++A++ + A Sbjct: 136 LAHQFKSNGQKVVLGAADTFRAAAIDQLQIWADRTGVPIIKQKMGSDPASVAFDTVQSAV 195 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DV++IDTAGRLHN LM + K+ RV+++ APH VL VLD +TGQNA Q + Sbjct: 196 KMNADVVLIDTAGRLHNKVNLMNELTKVKRVMQKTIADAPHEVLLVLDGSTGQNAFEQAK 255 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F A T L +TK+DGTA+GG +I I KIPV ++GVGEGI DL+ F +F Sbjct: 256 QFTAATEVTSLAVTKLDGTAKGGVVIGISDQFKIPVKYIGVGEGIEDLQVFNKYEF 311 >gi|164688565|ref|ZP_02212593.1| hypothetical protein CLOBAR_02210 [Clostridium bartlettii DSM 16795] gi|164602978|gb|EDQ96443.1| hypothetical protein CLOBAR_02210 [Clostridium bartlettii DSM 16795] Length = 452 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 117/254 (46%), Positives = 163/254 (64%), Gaps = 3/254 (1%) Query: 54 IRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112 I +D+GV I+E+L R K Q V ++ +I +L D SH P Sbjct: 195 ITADVGVNTTMDIIEKLEDVIRTKKITDPQDVREELKLIIEDILS--KDDTKLDVSHSPT 252 Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +IL+VGVNGVGKTT IGKL+ + G KV+LAAGDTFR+AAIDQL++WA+R + D + Sbjct: 253 IILMVGVNGVGKTTTIGKLAHRYKSEGKKVLLAAGDTFRAAAIDQLEVWANRCNVDIIKH 312 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 + G+D A+ ++A K ++A+ VDVLI DTAGRLHN S LM +GK+ +++ R P A Sbjct: 313 QEGADPGAVIFDAIKASKARGVDVLICDTAGRLHNKSNLMNELGKVFKIVDREYPEAKKE 372 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 VL V+DATTGQNA+ Q + F V TGL +TK+DGTA+GG ++ + +PV +GVG Sbjct: 373 VLLVVDATTGQNAVSQAKSFKEVCDITGLALTKLDGTAKGGVILAVKSEVDVPVKLIGVG 432 Query: 293 EGINDLEPFVAKDF 306 E + DL+ F +K F Sbjct: 433 EKMEDLQDFDSKSF 446 >gi|313114996|ref|ZP_07800489.1| signal recognition particle-docking protein FtsY [Faecalibacterium cf. prausnitzii KLE1255] gi|310622687|gb|EFQ06149.1| signal recognition particle-docking protein FtsY [Faecalibacterium cf. prausnitzii KLE1255] Length = 316 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 123/288 (42%), Positives = 180/288 (62%), Gaps = 4/288 (1%) Query: 20 GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79 G T I + ++ +DD + ++LE+ LI +D+G VA ++V++L + + K + Sbjct: 21 GLEKTRTGFWGNILNTLTGSVIDDDMYDDLEEQLILADVGGEVAVRLVDKLRDRVHEKGL 80 Query: 80 SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138 D + ++I + + P ++ D S +P VILV+GVNGVGKTT I KL+ + Sbjct: 81 KTGEEAADALRDIIAEEMTPDAE---MDLSGKPAVILVIGVNGVGKTTSIAKLADHYTRE 137 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 G KVMLAAGDTFR+AA +QL+IWADR V + G+D AA+ ++ K A A+ D++I Sbjct: 138 GKKVMLAAGDTFRAAASEQLEIWADRAGVPIVSAGEGADPAAVIFDTVKSATARGYDMVI 197 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 DTAGRLHN + LMA + K+ R +K+ P A L VLDA TGQNA+ Q + F A Sbjct: 198 ADTAGRLHNKANLMAELSKISRSVKKASPEASLETLLVLDAITGQNAISQAKEFCKAADA 257 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TG+I+TK+DGTA+GG ++ + +PV F+GVGEGI+DL PF + F Sbjct: 258 TGIILTKLDGTAKGGCVVAVKQRLGLPVRFIGVGEGIDDLLPFTPEGF 305 >gi|288802188|ref|ZP_06407628.1| signal recognition particle-docking protein FtsY [Prevotella melaninogenica D18] gi|302346578|ref|YP_003814876.1| signal recognition particle-docking protein FtsY [Prevotella melaninogenica ATCC 25845] gi|288335155|gb|EFC73590.1| signal recognition particle-docking protein FtsY [Prevotella melaninogenica D18] gi|302150799|gb|ADK97060.1| signal recognition particle-docking protein FtsY [Prevotella melaninogenica ATCC 25845] Length = 316 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 125/292 (42%), Positives = 183/292 (62%), Gaps = 8/292 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG T + +T ++ + ++DD V ++LE++L+ SD+GV KI+ + +R Sbjct: 15 LDKGLEKTKENVFSKLTRAVAGKSKVDDEVLDDLEEILVTSDVGVDTTIKIIRRI-EERV 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIG 129 A+D VS + + I +L + N +++ P+VILVVGVNGVGKTT IG Sbjct: 74 ARDKYVSTSELNSILKSEITALLTENNTGDNGEWTLPEGTHPYVILVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG KV L A DTFR+AA++Q++IW DR V ++G+D A++A++ + A Sbjct: 134 KLAWQFKQAGKKVYLGAADTFRAAAVEQIQIWGDRVGVPVVKQQMGADPASVAFDTLQSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A DV+IIDTAGRLHN LM + K+ V+K++ P APH VL VLD +TGQNA Q Sbjct: 194 KANGADVVIIDTAGRLHNKVGLMNELKKIKDVMKKVVPEAPHEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 F AV T L +TK+DGTA+GG +I I K+PV ++G+GEG+ DL+ F Sbjct: 254 RQFAAVTQITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQLF 305 >gi|240127274|ref|ZP_04739935.1| putative signal recognition particle protein [Neisseria gonorrhoeae SK-93-1035] gi|268685639|ref|ZP_06152501.1| signal recognition particle protein [Neisseria gonorrhoeae SK-93-1035] gi|268625923|gb|EEZ58323.1| signal recognition particle protein [Neisseria gonorrhoeae SK-93-1035] Length = 402 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 117/297 (39%), Positives = 182/297 (61%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G A + K+ + + + ++ + + EELE +LI D+G+ + +++++ Sbjct: 101 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 160 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 161 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 220 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W R + V S+ D+AA+ ++A + A Sbjct: 221 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVT-VISQTTGDSAAVCFDAVQAA 279 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 280 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQV 339 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F Sbjct: 340 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 396 >gi|86157101|ref|YP_463886.1| signal recognition particle-docking protein FtsY [Anaeromyxobacter dehalogenans 2CP-C] gi|85773612|gb|ABC80449.1| signal recognition particle-docking protein FtsY [Anaeromyxobacter dehalogenans 2CP-C] Length = 444 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 121/276 (43%), Positives = 175/276 (63%), Gaps = 15/276 (5%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKML--- 96 +DD V +LE++L +DIGV A +++E K K++S +R+ + E I ++L Sbjct: 168 VDDSVLADLEEVLFTADIGVKTATRLLESAREKVRRKELSDPERLKAALREEIARILDLA 227 Query: 97 ------MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 PL+ RP V++VVGVNG GKTT +GKL+ K+ G KV+L AGDTF Sbjct: 228 ATGGAAAPLAVG-----EARPWVVMVVGVNGSGKTTTVGKLAAKLQGGGHKVLLGAGDTF 282 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R+AA +QL++WA+R SA V + G+D AA+ +EA ++ + VDV++ DTAGRLH + Sbjct: 283 RAAAGEQLEVWAERVSAPIVRGKEGADPAAVCFEAVQRGAQEGVDVVLCDTAGRLHTKTP 342 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + K+ RV+ + APH VL VLDAT GQNA+ Q FH G TG+ +TK+DGTA Sbjct: 343 LMEELKKVQRVIGKAAAGAPHEVLLVLDATNGQNAIAQARQFHEALGVTGIALTKLDGTA 402 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +GG +I I +IPV ++GVGE + DL+PF ++F Sbjct: 403 KGGVIIGICDELRIPVRYVGVGERVADLKPFSPREF 438 >gi|59802367|ref|YP_209079.1| putative signal recognition particle protein [Neisseria gonorrhoeae FA 1090] gi|59719262|gb|AAW90667.1| putative signal recognition particle protein [Neisseria gonorrhoeae FA 1090] Length = 421 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 117/297 (39%), Positives = 182/297 (61%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G A + K+ + + + ++ + + EELE +LI D+G+ + +++++ Sbjct: 120 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 179 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 180 RGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W R + V S+ D+AA+ ++A + A Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVT-VISQTTGDSAAVCFDAVQAA 298 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQV 358 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415 >gi|85859850|ref|YP_462052.1| cell division protein ftsY [Syntrophus aciditrophicus SB] gi|85722941|gb|ABC77884.1| cell division protein ftsY [Syntrophus aciditrophicus SB] Length = 330 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 122/300 (40%), Positives = 182/300 (60%), Gaps = 11/300 (3%) Query: 13 WIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + KL +G A T L + DII + +D + +ELE+ LI +D+G A +++E++ Sbjct: 26 FFDKLKRGLAKTRDLLLTDVDDIILGKKEIDQELFDELEEALIAADVGPAFTSELIEKMT 85 Query: 72 TKRYAKDVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 K++ L +V L+ K PL P F+ ILVVGVNG GKTT Sbjct: 86 DSVKRKELDSPERLKEVLRSTMKTLLKKNEAPLVIPEKQIFT-----ILVVGVNGTGKTT 140 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+ + + G V + A DTFR+AAI+QL+IW+ R + + SD +A+ ++A Sbjct: 141 TIGKLANQFKEEGRTVAMVAADTFRAAAIEQLEIWSQRVGVPLIKQKQDSDPSAVVFDAI 200 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A++ K +VLIIDTAGRLH LM + KM R++ R P APH VL VLDATTGQNA+ Sbjct: 201 TAAKSGKAEVLIIDTAGRLHTQVNLMEEMKKMKRIMGRELPGAPHEVLLVLDATTGQNAV 260 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q +MF G TG+++TK+DGT++GG ++ I + IP+ ++G+GEG++DL F +++F Sbjct: 261 NQAKMFTDAVGVTGIVLTKLDGTSKGGVILRIAQEYNIPIRYIGIGEGLDDLREFNSEEF 320 >gi|319945301|ref|ZP_08019563.1| cell division protein FtsY [Lautropia mirabilis ATCC 51599] gi|319741871|gb|EFV94296.1| cell division protein FtsY [Lautropia mirabilis ATCC 51599] Length = 533 Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 125/305 (40%), Positives = 183/305 (60%), Gaps = 16/305 (5%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W +L G A T +L I S R+D+ + EELE L+ SD G +++EL Sbjct: 236 WFARLRGGLARTRSQLG----SIFSRNRIDETLYEELETALLASDTGYGTTTWLLDELRE 291 Query: 73 K----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + R +++ L D+ + ++L PL KP + D + P V+++ GVNG GKTT I Sbjct: 292 RAQRDRINDAATLKTALIDI---LTELLSPLEKPIDVDRAD-PLVMMITGVNGAGKTTSI 347 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL++ + V+LAAGDTFR+AA +QL W +R + +E G D AA+A++A K Sbjct: 348 GKLARHLHQIDQSVLLAAGDTFRAAAREQLARWGERNQVHVIANE-GGDPAAVAFDAIKA 406 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 QA+KVDV+++DTAGRL LM + K+ RV+ + APH VL VLD TGQN L Q Sbjct: 407 GQARKVDVVMVDTAGRLPTQRHLMDELKKIRRVIGKAMDGAPHEVLLVLDGNTGQNMLAQ 466 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK---IPVYFLGVGEGINDLEPFVAKD 305 V+ F TGL++TK+DGTA+GG + + T + +PVYF+GVGEG+ DL+ F A++ Sbjct: 467 VQAFDEAVQLTGLVVTKLDGTAKGGAIAALAHTRRDNPLPVYFIGVGEGVEDLQAFSARE 526 Query: 306 FSAVI 310 F+ + Sbjct: 527 FATAL 531 >gi|240013197|ref|ZP_04720110.1| putative signal recognition particle protein [Neisseria gonorrhoeae DGI18] gi|240081753|ref|ZP_04726296.1| putative signal recognition particle protein [Neisseria gonorrhoeae FA19] gi|240114730|ref|ZP_04728792.1| putative signal recognition particle protein [Neisseria gonorrhoeae PID18] gi|240116929|ref|ZP_04730991.1| putative signal recognition particle protein [Neisseria gonorrhoeae PID1] gi|240120269|ref|ZP_04733231.1| putative signal recognition particle protein [Neisseria gonorrhoeae PID24-1] gi|240122570|ref|ZP_04735526.1| putative signal recognition particle protein [Neisseria gonorrhoeae PID332] gi|254492789|ref|ZP_05105960.1| signal recognition particle protein [Neisseria gonorrhoeae 1291] gi|260441459|ref|ZP_05795275.1| putative signal recognition particle protein [Neisseria gonorrhoeae DGI2] gi|268597852|ref|ZP_06132019.1| signal recognition particle protein [Neisseria gonorrhoeae FA19] gi|268600381|ref|ZP_06134548.1| signal recognition particle protein [Neisseria gonorrhoeae PID18] gi|268602610|ref|ZP_06136777.1| signal recognition particle protein [Neisseria gonorrhoeae PID1] gi|268681160|ref|ZP_06148022.1| signal recognition particle protein [Neisseria gonorrhoeae PID332] gi|291044820|ref|ZP_06570529.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|226511829|gb|EEH61174.1| signal recognition particle protein [Neisseria gonorrhoeae 1291] gi|268551640|gb|EEZ46659.1| signal recognition particle protein [Neisseria gonorrhoeae FA19] gi|268584512|gb|EEZ49188.1| signal recognition particle protein [Neisseria gonorrhoeae PID18] gi|268586741|gb|EEZ51417.1| signal recognition particle protein [Neisseria gonorrhoeae PID1] gi|268621444|gb|EEZ53844.1| signal recognition particle protein [Neisseria gonorrhoeae PID332] gi|291011714|gb|EFE03710.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] Length = 417 Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 117/297 (39%), Positives = 182/297 (61%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G A + K+ + + + ++ + + EELE +LI D+G+ + +++++ Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 176 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W R + V S+ D+AA+ ++A + A Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVT-VISQTTGDSAAVCFDAVQAA 294 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 295 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQV 354 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F Sbjct: 355 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 411 >gi|294776167|ref|ZP_06741656.1| signal recognition particle-docking protein FtsY [Bacteroides vulgatus PC510] gi|294449990|gb|EFG18501.1| signal recognition particle-docking protein FtsY [Bacteroides vulgatus PC510] Length = 319 Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 125/297 (42%), Positives = 182/297 (61%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG + T + I ++ + ++DD V + LE++LI SD+GV I++ + +R Sbjct: 15 LDKGLSKTKENVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EERV 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIG 129 AKD V+ Q + + E I +L + + DF+ +P+VI+VVGVNGVGKTT IG Sbjct: 74 AKDKYVNTQELNKILREEIAALLTENNTVDSDDFTVPEGKKPYVIMVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG V L A DTFR+AA++QL IW +R + ++GSD A++A++ A Sbjct: 134 KLAYQFKKAGKTVYLGAADTFRAAAVEQLDIWGERVGVPVIKQKMGSDPASVAFDTLSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A DV+IIDTAGRLHN LM + K+ V+K++ APH VL VLD +TGQNA Q Sbjct: 194 VANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVADAPHEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F T + +TK+DGTA+GG +I I KIPV ++G+GEGI D++ F K+F Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISEQFKIPVKYIGLGEGIEDMQVFRKKEF 310 >gi|291527952|emb|CBK93538.1| signal recognition particle-docking protein FtsY [Eubacterium rectale M104/1] Length = 313 Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 121/296 (40%), Positives = 179/296 (60%), Gaps = 4/296 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + ++L G T + GI + S +DD EELE++LI D+GV + I+E+L Sbjct: 10 FFKRLVSGLTKTRDNIVSGIDSLFSGFLHIDDDFYEELEEILIMGDLGVRATESIIEDL- 68 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +R K+ ++ LI + + + + F + V+LV+GVNGVGKTT +GK Sbjct: 69 -QRKVKEQHIKEPAECKELLIESIKEQMKVEETAYRFENEKSVVLVIGVNGVGKTTTVGK 127 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K+ + G KV++A DTFR+AA DQLK WA+R D + G+D A+ Y+A ++ Sbjct: 128 LAGKLKEQGKKVVIAGADTFRAAAGDQLKEWANRAGVDMIGGAEGADPGAVVYDAVAASK 187 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ DVL++DTAGRLHN LM +GK+ ++L+ P A L VLDATTGQNAL Q Sbjct: 188 ARNADVLLVDTAGRLHNKKNLMNELGKINKILESEYPDAYRETLVVLDATTGQNALVQAR 247 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F VA +G+++TKMDGTA+GG + I +PV ++GVGE I+DL+ F + +F Sbjct: 248 EFSDVAKISGIVLTKMDGTAKGGIAVAIQSELSVPVKYIGVGETIDDLQKFDSDEF 303 >gi|194099661|ref|YP_002002796.1| putative signal recognition particle protein [Neisseria gonorrhoeae NCCP11945] gi|240015638|ref|ZP_04722178.1| putative signal recognition particle protein [Neisseria gonorrhoeae FA6140] gi|240114036|ref|ZP_04728526.1| putative signal recognition particle protein [Neisseria gonorrhoeae MS11] gi|268600099|ref|ZP_06134266.1| signal recognition particle protein [Neisseria gonorrhoeae MS11] gi|193934951|gb|ACF30775.1| putative signal recognition particle protein [Neisseria gonorrhoeae NCCP11945] gi|268584230|gb|EEZ48906.1| signal recognition particle protein [Neisseria gonorrhoeae MS11] gi|317165145|gb|ADV08686.1| putative signal recognition particle protein [Neisseria gonorrhoeae TCDC-NG08107] Length = 417 Score = 219 bits (559), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 117/297 (39%), Positives = 182/297 (61%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G A + K+ + + + ++ + + EELE +LI D+G+ + +++++ Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 176 RGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W R + V S+ D+AA+ ++A + A Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVT-VISQTTGDSAAVCFDAVQAA 294 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 295 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQV 354 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F Sbjct: 355 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 411 >gi|307297854|ref|ZP_07577660.1| signal recognition particle-docking protein FtsY [Thermotogales bacterium mesG1.Ag.4.2] gi|306917114|gb|EFN47496.1| signal recognition particle-docking protein FtsY [Thermotogales bacterium mesG1.Ag.4.2] Length = 303 Score = 219 bits (559), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 131/304 (43%), Positives = 192/304 (63%), Gaps = 11/304 (3%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L G T + + ++S LD EE+E+LLI SD+G A++++E L ++ Sbjct: 6 RLNDGLKRTREGFFKRVRKLLSFESLDSDSLEEIEELLILSDMGSETAEEVIEALKDRKD 65 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 ++ VL +V L+ + +P P RP+V+ VVGVNG GKTT IGKLSK Sbjct: 66 KGKEPIE-VLKEV--LVEILDIPFEVP-----QARPYVVSVVGVNGTGKTTTIGKLSKLY 117 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 S G KV+LAA DTFR+AA++QL+IW++R + DF+ G+D+AA+A++A + A +K D Sbjct: 118 SSNGNKVVLAACDTFRAAAVEQLRIWSERANVDFISQGQGADSAAVAFDAVRHAVSKGKD 177 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 V+I+DTAGRLH S LM + K+ RV+ + P AP+ VL V+DATTGQN L Q + F Sbjct: 178 VVIVDTAGRLHTRSNLMEELKKVHRVIGKASPGAPNEVLLVIDATTGQNGLVQAKKFKEA 237 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TG+++TK+DGTA+GG + IV IPV ++GVGE +DL+PF +++F + L Sbjct: 238 VDVTGIVLTKLDGTAKGGIIFAIVKELGIPVRYIGVGEKEDDLKPFDSREF---VNALLS 294 Query: 316 YGEE 319 GEE Sbjct: 295 TGEE 298 >gi|323697659|ref|ZP_08109571.1| signal recognition particle-docking protein FtsY [Desulfovibrio sp. ND132] gi|323457591|gb|EGB13456.1| signal recognition particle-docking protein FtsY [Desulfovibrio desulfuricans ND132] Length = 463 Score = 219 bits (559), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 120/297 (40%), Positives = 188/297 (63%), Gaps = 5/297 (1%) Query: 16 KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 KL++G + T ++ + I ++S+ L+D EE E++LI +D+G+ A +++ L K Sbjct: 168 KLSEGISKTREQITKRIDGLLSAHSSLNDDFWEEFEEILIMADVGMEAAGQLMANL--KA 225 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 A+ D +++ L + K P + P V++++GVNGVGKTT I KL+ Sbjct: 226 RARKAGTDNP-DDFKDILRAELEDIFKVPKRIKAVNPPEVLMMIGVNGVGKTTTIAKLAY 284 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 + G KV++AAGDTFR+AAIDQL++WADR F GSD AA+A+EA +A ++ Sbjct: 285 RAQMQGRKVLIAAGDTFRAAAIDQLRVWADRLGTGFYAKAEGSDPAAVAFEAMDKAVSEG 344 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 D+L++DTAGRLH S LM + K+ RV+ + APH + V+DATTGQNAL Q ++F+ Sbjct: 345 YDLLLLDTAGRLHTKSNLMDELTKIKRVVGKKHEGAPHRNVLVIDATTGQNALSQTKLFN 404 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 G +I+TK+DGTA+GG ++ + + +K+P+ F+G+GE + DL PF KDF+ + Sbjct: 405 QAVGVDEIILTKLDGTAKGGVVVAVTLQNKLPITFVGLGEKMEDLRPFDGKDFAKAL 461 >gi|330721416|gb|EGG99477.1| Signal recognition particle receptor protein FtsY [gamma proteobacterium IMCC2047] Length = 278 Score = 219 bits (559), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 111/255 (43%), Positives = 163/255 (63%), Gaps = 2/255 (0%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP 111 L+ +D+GV +++ L + K + LY + + + ++ P + P + +P Sbjct: 18 LLMADMGVEAVTHVIDSLTEQLERKTLKDSDALYAALKQELRDLIKPCALPLQVE-DKKP 76 Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 +VIL+VGVNG GKTT IGKL+K++ G VMLAAGDTFR+AA++QL+ W R + Sbjct: 77 YVILMVGVNGAGKTTTIGKLAKRLQSEGRSVMLAAGDTFRAAAVEQLQEWGSRNDVPVIA 136 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 G+D+A++ ++A + A+A+ DVLI DTAGRL N LMA + K+ RV+ +LD APH Sbjct: 137 QHTGADSASVIFDAVESARARGADVLIADTAGRLQNKDNLMAELTKVKRVMAKLDDSAPH 196 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 V+ VLDA TGQNAL Q +F+ G TG+ MTK+DGTA+GG + + +P+ F+GV Sbjct: 197 EVMLVLDAGTGQNALSQATLFNEAVGVTGISMTKLDGTAKGGVIFAVAKQLGLPIRFIGV 256 Query: 292 GEGINDLEPFVAKDF 306 GE I+DL PF A +F Sbjct: 257 GEKIDDLRPFDADEF 271 >gi|212693205|ref|ZP_03301333.1| hypothetical protein BACDOR_02715 [Bacteroides dorei DSM 17855] gi|237709947|ref|ZP_04540428.1| recognition particle-docking protein FtsY [Bacteroides sp. 9_1_42FAA] gi|237725387|ref|ZP_04555868.1| recognition particle-docking protein FtsY [Bacteroides sp. D4] gi|265753599|ref|ZP_06088954.1| signal recognition particle-docking protein FtsY [Bacteroides sp. 3_1_33FAA] gi|212664310|gb|EEB24882.1| hypothetical protein BACDOR_02715 [Bacteroides dorei DSM 17855] gi|229436074|gb|EEO46151.1| recognition particle-docking protein FtsY [Bacteroides dorei 5_1_36/D4] gi|229456040|gb|EEO61761.1| recognition particle-docking protein FtsY [Bacteroides sp. 9_1_42FAA] gi|263235313|gb|EEZ20837.1| signal recognition particle-docking protein FtsY [Bacteroides sp. 3_1_33FAA] Length = 319 Score = 219 bits (559), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 125/297 (42%), Positives = 182/297 (61%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG + T + I ++ + ++DD V + LE++LI SD+GV I++ + +R Sbjct: 15 LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EERV 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIG 129 AKD V+ Q + + E I +L + + DF+ +P+VI+VVGVNGVGKTT IG Sbjct: 74 AKDKYVNTQELNKILREEIAALLTENNTVDSDDFTVPEGKKPYVIMVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG V L A DTFR+AA++QL IW +R + ++GSD A++A++ A Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLDIWGERVGVPVIKQKMGSDPASVAFDTLSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A DV+IIDTAGRLHN LM + K+ V+K++ APH VL VLD +TGQNA Q Sbjct: 194 VANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVADAPHEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F T + +TK+DGTA+GG +I I KIPV ++G+GEGI D++ F K+F Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISEQFKIPVKYIGLGEGIEDMQVFRKKEF 310 >gi|251797474|ref|YP_003012205.1| signal recognition particle-docking protein FtsY [Paenibacillus sp. JDR-2] gi|247545100|gb|ACT02119.1| signal recognition particle-docking protein FtsY [Paenibacillus sp. JDR-2] Length = 332 Score = 219 bits (559), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 132/320 (41%), Positives = 195/320 (60%), Gaps = 3/320 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62 + +AS++ + +G T + L E + ++I+ R+ +D+ EELE++LI +D+GV Sbjct: 9 ESIASKTEAVTTIFKEGLTKTRVALVEKVEELITRRKKIDEEFYEELEEILIGADVGVNT 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 +++EL + + + L + SE + +L P VIL VGVNG Sbjct: 69 VMTLIDELRAEVKKRKIEQAAELQPILSEKLIGLLKGEQNPGLQMAKSGITVILFVGVNG 128 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT IGKL+ K G V+LAAGDTFR+AAI+QL++W R D + + GSD AA+ Sbjct: 129 VGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAAAIEQLEVWGQRVGVDVIKQQSGSDPAAV 188 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+ + VDVL+ DTAGRL N S LM + K+ RV++R P APH VL VLDATT Sbjct: 189 MFDAVQAAKQRGVDVLLCDTAGRLQNKSNLMEELNKIFRVIQREIPDAPHEVLLVLDATT 248 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL Q ++F +G TGL++TK+DGTA+GG +I I +PV +G+GE + DL+ F Sbjct: 249 GQNALSQAKLFGEKSGVTGLVLTKLDGTAKGGIVIAIRNELNLPVKLVGLGEKMTDLQEF 308 Query: 302 VAKDF-SAVITGCLDYGEEK 320 + F A+ G + EE+ Sbjct: 309 DSVQFVHALFAGLIQREEEQ 328 >gi|220915825|ref|YP_002491129.1| signal recognition particle-docking protein FtsY [Anaeromyxobacter dehalogenans 2CP-1] gi|219953679|gb|ACL64063.1| signal recognition particle-docking protein FtsY [Anaeromyxobacter dehalogenans 2CP-1] Length = 469 Score = 219 bits (559), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 122/276 (44%), Positives = 175/276 (63%), Gaps = 15/276 (5%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKML--- 96 +DD V +LE++L +DIGV A +++E K K++S +R+ + E I ++L Sbjct: 193 VDDSVLADLEEVLFTADIGVKTATRLLESAREKVRRKELSDPERLKAALREEIARILDLA 252 Query: 97 ------MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 PL+ RP V++VVGVNG GKTT +GKL+ K+ AG KV+L AGDTF Sbjct: 253 GTGGAAAPLAVG-----EARPWVVMVVGVNGSGKTTTVGKLAAKLQGAGHKVLLGAGDTF 307 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R+AA +QL++WA+R SA V + G+D AA+ +EA ++ + VDV++ DTAGRLH Sbjct: 308 RAAAGEQLEVWAERVSAPVVRGKEGADPAAVCFEAVQRGAQEGVDVVLCDTAGRLHTKMP 367 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + K+ RV+ + APH VL VLDAT GQNA+ Q FH G TG+ +TK+DGTA Sbjct: 368 LMEELKKVQRVIGKAAAGAPHEVLLVLDATNGQNAIAQARQFHEALGVTGIALTKLDGTA 427 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +GG +I I +IPV ++GVGE + DL+PF ++F Sbjct: 428 KGGVIIGICDELRIPVRYVGVGERVADLKPFSPREF 463 >gi|300692639|ref|YP_003753634.1| signal recognition particle (SRP) GTPase [Ralstonia solanacearum PSI07] gi|299079699|emb|CBJ52376.1| Signal recognition particle (SRP) GTPase [Ralstonia solanacearum PSI07] Length = 375 Score = 219 bits (559), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 125/301 (41%), Positives = 183/301 (60%), Gaps = 7/301 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W+ +L G + TS +G+T + ++D+ + EELE L+ +D GV + ++ EL Sbjct: 81 WMSRLRSGLSKTS----KGLTTLFVGVKVDEALFEELETALLMADAGVDATEYLLGELRR 136 Query: 73 KRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + A+ + + + V + +L+ ++L PL K +P VI++ GVNG GKTT IGKL Sbjct: 137 RVKAQRIETAEGVKTALRDLLIELLHPLEKTMVLG-REQPTVIMIAGVNGAGKTTSIGKL 195 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 K G V+LAAGDTFR+AA +QL IW R + V E G D AA+ ++A A+A Sbjct: 196 CKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQESG-DPAAVIFDAVNAARA 254 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+++ DTAGRL LM + K+ RV+ + APH L V+DA TGQNAL QV+ Sbjct: 255 RGIDIVMADTAGRLPTQLHLMEELKKVRRVIGKAMATAPHETLLVIDANTGQNALAQVKA 314 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF A++F+ + Sbjct: 315 FDDTLGLTGLIITKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFADALL 374 Query: 312 G 312 G Sbjct: 375 G 375 >gi|254523884|ref|ZP_05135939.1| cell division protein [Stenotrophomonas sp. SKA14] gi|219721475|gb|EED40000.1| cell division protein [Stenotrophomonas sp. SKA14] Length = 437 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 118/256 (46%), Positives = 163/256 (63%), Gaps = 3/256 (1%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHR 110 LI +D+GV +VE L + +++ + L SELI +L P++KP D + + Sbjct: 172 LITADVGVGATTDLVEGLRKRMKSREFADANALLAALRSELI-AILQPVAKPLVIDRNAK 230 Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P V+L VGVNGVGKTT IGKL+K+ D G +MLAAGDTFR+AA+ QL+ W +R V Sbjct: 231 PFVVLTVGVNGVGKTTTIGKLAKRFKDDGHSLMLAAGDTFRAAAVAQLQAWGERNGVAVV 290 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 +DAA++A++A + +A+ VLI DTAGRLH S LM +GK+ RVL ++DP AP Sbjct: 291 AQGQNADAASVAFDALQAGKARGTSVLIADTAGRLHTQSGLMNELGKIRRVLGKIDPTAP 350 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 H VL V+D TTGQNAL Q+ F+A TGL++TK+DGTA+GG + + IP+ F G Sbjct: 351 HEVLMVIDGTTGQNALSQLRQFNAAVNVTGLVVTKLDGTAKGGVVFALAREFGIPIRFAG 410 Query: 291 VGEGINDLEPFVAKDF 306 +GE DL F + F Sbjct: 411 IGERPEDLRVFDPEAF 426 >gi|325294603|ref|YP_004281117.1| signal recognition particle-docking protein FtsY [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065051|gb|ADY73058.1| signal recognition particle-docking protein FtsY [Desulfurobacterium thermolithotrophum DSM 11699] Length = 473 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 123/293 (41%), Positives = 181/293 (61%), Gaps = 4/293 (1%) Query: 16 KLTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 KL K F K ++ + R +D+ + EELE+ LI +D+GV ++++ L + Sbjct: 173 KLLKSFKEGLKKTRDALGLSAFKGREVDESLFEELEEKLILADVGVNTTLELIDYLRNEA 232 Query: 75 YAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 + + S ++L + + +ML FN S +P VILV+GVNGVGKTT IGKL+K Sbjct: 233 KKRKIKSSDQLLELLKGKLKEMLSKCRGSFN--ISEKPSVILVLGVNGVGKTTTIGKLAK 290 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 ++ + G V+LAAGDTFR+AAI+QL++WA+R + + G+D AA+ ++A + +AK Sbjct: 291 QLKEKGYCVVLAAGDTFRAAAIEQLEVWAERAGVRIIKGQEGTDPAAVVFDAIQSVKAKG 350 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 D+LI+DTAGRLHN LM I K+ +V+ R P P +L VLDA TGQNA+ Q F Sbjct: 351 DDILIVDTAGRLHNKDRLMKEIHKIKKVIGREFPGQPAEILLVLDANTGQNAISQARAFK 410 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + TG+ +TK+DGTA+GG +I I KIP+ +G+GE I DL F K+F Sbjct: 411 EITDVTGIALTKLDGTAKGGIVIAICNDLKIPIKLVGIGEKIEDLRKFDPKEF 463 >gi|197121124|ref|YP_002133075.1| signal recognition particle-docking protein FtsY [Anaeromyxobacter sp. K] gi|196170973|gb|ACG71946.1| signal recognition particle-docking protein FtsY [Anaeromyxobacter sp. K] Length = 469 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 122/276 (44%), Positives = 175/276 (63%), Gaps = 15/276 (5%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKML--- 96 +DD V +LE++L +DIGV A +++E K K++S +R+ + E I ++L Sbjct: 193 VDDAVLADLEEVLFTADIGVKTATRLLESAREKVRRKELSDPERLKAALREEIARILDLA 252 Query: 97 ------MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 PL+ RP V++VVGVNG GKTT +GKL+ K+ AG KV+L AGDTF Sbjct: 253 GTGGAAAPLAVG-----EARPWVVMVVGVNGSGKTTTVGKLAAKLQGAGHKVLLGAGDTF 307 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R+AA +QL++WA+R SA V + G+D AA+ +EA ++ + VDV++ DTAGRLH Sbjct: 308 RAAAGEQLEVWAERVSAPVVRGKEGADPAAVCFEAVQRGAQEGVDVVLCDTAGRLHTKMP 367 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + K+ RV+ + APH VL VLDAT GQNA+ Q FH G TG+ +TK+DGTA Sbjct: 368 LMEELKKVQRVIGKAAAGAPHEVLLVLDATNGQNAIAQARQFHEALGVTGIALTKLDGTA 427 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +GG +I I +IPV ++GVGE + DL+PF ++F Sbjct: 428 KGGVIIGICDELRIPVRYVGVGERVADLKPFSPREF 463 >gi|150005788|ref|YP_001300532.1| recognition particle-docking protein FtsY [Bacteroides vulgatus ATCC 8482] gi|254882030|ref|ZP_05254740.1| recognition particle-docking protein FtsY [Bacteroides sp. 4_3_47FAA] gi|319640962|ref|ZP_07995670.1| hypothetical protein HMPREF9011_01267 [Bacteroides sp. 3_1_40A] gi|149934212|gb|ABR40910.1| recognition particle-docking protein FtsY [Bacteroides vulgatus ATCC 8482] gi|254834823|gb|EET15132.1| recognition particle-docking protein FtsY [Bacteroides sp. 4_3_47FAA] gi|317387407|gb|EFV68278.1| hypothetical protein HMPREF9011_01267 [Bacteroides sp. 3_1_40A] Length = 319 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 125/297 (42%), Positives = 182/297 (61%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG + T + I ++ + ++DD V + LE++LI SD+GV I++ + +R Sbjct: 15 LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EERV 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIG 129 AKD V+ Q + + E I +L + + DF+ +P+VI+VVGVNGVGKTT IG Sbjct: 74 AKDKYVNTQELNKILREEIAALLTENNTVDSDDFTVPEGKKPYVIMVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG V L A DTFR+AA++QL IW +R + ++GSD A++A++ A Sbjct: 134 KLAYQFKKAGKTVYLGAADTFRAAAVEQLDIWGERVGVPVIKQKMGSDPASVAFDTLSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A DV+IIDTAGRLHN LM + K+ V+K++ APH VL VLD +TGQNA Q Sbjct: 194 VANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVADAPHEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F T + +TK+DGTA+GG +I I KIPV ++G+GEGI D++ F K+F Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISEQFKIPVKYIGLGEGIEDMQVFRKKEF 310 >gi|239999853|ref|ZP_04719777.1| putative signal recognition particle protein [Neisseria gonorrhoeae 35/02] gi|268595664|ref|ZP_06129831.1| signal recognition particle protein [Neisseria gonorrhoeae 35/02] gi|268549053|gb|EEZ44471.1| signal recognition particle protein [Neisseria gonorrhoeae 35/02] Length = 417 Score = 219 bits (558), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 117/297 (39%), Positives = 182/297 (61%), Gaps = 2/297 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G A + K+ + + + ++ + + EELE +LI D+G+ + +++++ Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 176 RGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W R + V S+ D+AA+ ++A + A Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNIT-VISQTTGDSAAVCFDAVQAA 294 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 295 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQV 354 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F Sbjct: 355 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 411 >gi|291546251|emb|CBL19359.1| signal recognition particle-docking protein FtsY [Ruminococcus sp. SR1/5] Length = 312 Score = 219 bits (558), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 131/306 (42%), Positives = 184/306 (60%), Gaps = 10/306 (3%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64 +A E + ++L G T + G I S +DD EELE++LI DIG+ Sbjct: 1 MAEEKKGFFKRLVSGLTKTRDNIVAGFDSIFSGFSSIDDDFYEELEEILIMGDIGINATT 60 Query: 65 KIVEEL---LTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 I+E L + +++ K+ S +++L D I K + S ++F +R VILV+GVN Sbjct: 61 SILEHLKEQVAEQHIKEPSQCKQLLIDS---IKKQMQVESTE--YEFENRKSVILVIGVN 115 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT +GKL+ K+ D G KV+L A DTFR+AA +QL WA+R + + + G+D A+ Sbjct: 116 GVGKTTSVGKLAGKLKDQGKKVILGAADTFRAAAGEQLTQWANRAGVEIIGGQDGADPAS 175 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + Y+A A+A+ D+LI DTAGRLHN LM + K+ R+L+R P A L VLD T Sbjct: 176 VVYDAVAAAKARNADILICDTAGRLHNKKNLMEELRKIYRILEREYPEAYLETLVVLDGT 235 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNAL Q F VA TG+I+TK+DGTA+GG + I IPV ++GVGE I+DL+ Sbjct: 236 TGQNALSQARQFAEVANVTGIILTKLDGTAKGGIAVAIQSELDIPVKYIGVGESIDDLQK 295 Query: 301 FVAKDF 306 F A F Sbjct: 296 FDADAF 301 >gi|108804224|ref|YP_644161.1| signal recognition particle-docking protein FtsY [Rubrobacter xylanophilus DSM 9941] gi|108765467|gb|ABG04349.1| signal recognition particle-docking protein FtsY [Rubrobacter xylanophilus DSM 9941] Length = 348 Score = 219 bits (558), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 130/277 (46%), Positives = 179/277 (64%), Gaps = 12/277 (4%) Query: 42 DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSELIHKMLM 97 D+ E +E++LI SD+GV K+V+ L + K+++ ++R+L + H M Sbjct: 80 DEEFWERVEEILIASDVGVPTTAKLVQRLEQEALEKNITGAGELRRLLVE-----HAARM 134 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 L P D SHRP VIL+VGVNG GKTT IGKL++ + VM AAGDTFR+AAI+Q Sbjct: 135 -LEGPVEIDLSHRPTVILMVGVNGTGKTTTIGKLARHLP--ARSVMFAAGDTFRAAAIEQ 191 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ W +R A V E G+DAAA+A++A + A+ + V+VLI+DTAGRLH LMA + K Sbjct: 192 LQKWGERVGAPVVARERGADAAAVAHDAVEAAKREGVEVLIVDTAGRLHTKVNLMAELEK 251 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + RV+ R P APH VL +DATTGQN LRQ MF VAG TG+++TK+DGTA+GG + Sbjct: 252 VRRVIGRQLPGAPHEVLLTVDATTGQNGLRQARMFKEVAGVTGVVLTKLDGTAKGGIALA 311 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 I +P+ + VGEG+ DL PF A+ F+ + G L Sbjct: 312 IADEVGLPIKLVSVGEGVEDLHPFDARQFAEALFGEL 348 >gi|262067701|ref|ZP_06027313.1| signal recognition particle-docking protein FtsY [Fusobacterium periodonticum ATCC 33693] gi|291378426|gb|EFE85944.1| signal recognition particle-docking protein FtsY [Fusobacterium periodonticum ATCC 33693] Length = 368 Score = 219 bits (558), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 130/300 (43%), Positives = 185/300 (61%), Gaps = 11/300 (3%) Query: 15 RKLTK---GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 ++LTK GF S KLK T S ++DD + EELEDLLI+SD+G+ + ++ EL Sbjct: 74 QRLTKSKEGFFS---KLKNIFT---SKSKIDDSIYEELEDLLIQSDVGLGMTTNLINELE 127 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K A +S +Y++ +L+ L+ + ++ +VIL+VGVNGVGKTT IGK Sbjct: 128 KKVKANKISETSEVYEILKDLMSDFLLSQDSKVHLK-DNKINVILIVGVNGVGKTTTIGK 186 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K G KV+L AGDTFR+AA++QL+ WA R D V G+D A++ Y+ +A+ Sbjct: 187 LALKYKKIGKKVLLGAGDTFRAAAVEQLEEWARRADVDIVKGREGADPASVVYDTLSKAE 246 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A K DV+IIDTAGRLHN + LM + K+ ++K+ + L V+D TTGQN L Q + Sbjct: 247 ATKADVVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESLLVIDGTTGQNGLNQAK 306 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F++V TG I+TK+DGTA+GG + + K P+ F+G+GE I DL F AKDF I Sbjct: 307 EFNSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIEDLIEFNAKDFVEAI 366 >gi|194365324|ref|YP_002027934.1| signal recognition particle-docking protein FtsY [Stenotrophomonas maltophilia R551-3] gi|194348128|gb|ACF51251.1| signal recognition particle-docking protein FtsY [Stenotrophomonas maltophilia R551-3] Length = 441 Score = 219 bits (558), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 116/255 (45%), Positives = 162/255 (63%), Gaps = 1/255 (0%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111 LI +D+GV +VE L + A++ V +L + + +L P++KP D + +P Sbjct: 176 LITADVGVGATTDLVEGLRKRMKAREFVDANALLAALRAELIAILQPVAKPLVIDRTAKP 235 Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 V+L VGVNGVGKTT IGKL+K+ D G +MLAAGDTFR+AA+ QL+ W +R V Sbjct: 236 FVVLTVGVNGVGKTTTIGKLAKRFKDEGHSLMLAAGDTFRAAAVAQLQAWGERNGVAVVA 295 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 +DAA++A++A + +A+ VLI DTAGRLH S LM +GK+ RVL ++DP APH Sbjct: 296 QGQNADAASVAFDALQAGKARGTSVLIADTAGRLHTQSGLMNELGKIRRVLGKIDPTAPH 355 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 VL V+D TTGQNAL Q+ F+A TGL++TK+DGTA+GG + + IP+ F G+ Sbjct: 356 EVLMVIDGTTGQNALSQLRQFNAAVNVTGLVVTKLDGTAKGGVVFALAREFGIPIRFAGI 415 Query: 292 GEGINDLEPFVAKDF 306 GE DL F + F Sbjct: 416 GERPEDLRVFDPEAF 430 >gi|303328099|ref|ZP_07358538.1| signal recognition particle-docking protein FtsY [Desulfovibrio sp. 3_1_syn3] gi|302861925|gb|EFL84860.1| signal recognition particle-docking protein FtsY [Desulfovibrio sp. 3_1_syn3] Length = 534 Score = 219 bits (558), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 122/298 (40%), Positives = 180/298 (60%), Gaps = 3/298 (1%) Query: 16 KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K+++G + T + + + + LD+ EELE+L I +D+G + ++VE L K Sbjct: 233 KISEGLSRTREQFARRLDTLFAGHGELDEQFWEELEELFIMADLGYEPSLELVERL--KE 290 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 A+ R L+ ++ P + P V+L++GVNGVGKTT I KL+ + Sbjct: 291 RARREKATRAEQARELLLAELEEIFHAPRRISAVNPPEVVLMIGVNGVGKTTTIAKLAHR 350 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G KVM+AAGDTFR+AAI+QL++WA+R A F GSD A++A+EA ++A + V Sbjct: 351 ARMQGKKVMIAAGDTFRAAAIEQLQVWAERVGALFHARPAGSDPASVAFEAVERAVREGV 410 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 DVL +DTAGRL LM + K+ +VL + P APH + VLDATTGQNAL Q ++F Sbjct: 411 DVLFVDTAGRLQTKVNLMEELTKIRQVLGKKHPGAPHRSILVLDATTGQNALSQTKLFKE 470 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 AG LI+TK+DGTA+GG I + + H +P+ F+G+GE + DL PF D++ + G Sbjct: 471 AAGVDELILTKLDGTAKGGVAIAVAMQHHLPITFVGLGEKMEDLRPFNGADYARALLG 528 >gi|150390510|ref|YP_001320559.1| signal recognition particle-docking protein FtsY [Alkaliphilus metalliredigens QYMF] gi|149950372|gb|ABR48900.1| signal recognition particle-docking protein FtsY [Alkaliphilus metalliredigens QYMF] Length = 423 Score = 219 bits (558), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 143/317 (45%), Positives = 198/317 (62%), Gaps = 20/317 (6%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDII-----SSRRLDDGVREELEDLLIRSDIGVAVAQK 65 LS ++L +G + T K+GIT + S +++D+ + EELE++LI SDIGV + Sbjct: 118 LSLFKRLKEGLSKT----KQGITGKVDELLKSYKKIDEALFEELEEILITSDIGVKTTME 173 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF---NWDFSHRPHVILVVGVNGV 122 I++ L K K VS V EL+ + L+ + + + P ++LVVGVNGV Sbjct: 174 IIDGLRDKIKEKKVSEPE---QVKELLKEALIEILQRLPDAQVNIEPGPAIVLVVGVNGV 230 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGK++ + G KV+LAAGDTFR+AA +QL+IWA R + V + GSD AA+ Sbjct: 231 GKTTSIGKMAHRFKQDGKKVLLAAGDTFRAAASEQLEIWAQRVGVEVVKHQEGSDPAAVI 290 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+A+KVDVLI DTAGRLHN LM +GK+ +V+ R A VL VLDATTG Sbjct: 291 FDAIQAAKARKVDVLICDTAGRLHNKKNLMNELGKVFKVVDREYGEATKEVLLVLDATTG 350 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA++Q + F VA TGLI+TK+DGTA+GG +I I IPV +GVGE + DL+ F Sbjct: 351 QNAIQQAKTFKEVANITGLILTKLDGTAKGGVVIGISQELTIPVKLIGVGEKMEDLQQFN 410 Query: 303 AKDFSAVITGCLDYGEE 319 A DF + +GEE Sbjct: 411 ATDFVKAL-----FGEE 422 >gi|254671832|emb|CBA03981.1| cell division protein [Neisseria meningitidis alpha275] Length = 350 Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 118/304 (38%), Positives = 187/304 (61%), Gaps = 2/304 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q++ + S +L +G + K+ + + + ++D+ + EELE +LI SD+G+ Sbjct: 42 QQLKNTSSVGAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEAT 101 Query: 64 QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + +++++ + K + L + E ++ ++ PL KP + P VI++ G+NG Sbjct: 102 EYLMKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGA 161 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ Sbjct: 162 GKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVC 220 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA G Sbjct: 221 FDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIG 280 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ QV+ F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF Sbjct: 281 QNAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFD 340 Query: 303 AKDF 306 A+ F Sbjct: 341 ARAF 344 >gi|323954782|gb|EGB50563.1| signal recognition particle-docking protein FtsY [Escherichia coli H263] Length = 259 Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 108/243 (44%), Positives = 159/243 (65%), Gaps = 2/243 (0%) Query: 65 KIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 K++ L K + LY + E + ++L + +P N + P VIL+VGVNGVG Sbjct: 9 KLITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVG 67 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ + Sbjct: 68 KTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIF 127 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A + A+A+ +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TGQ Sbjct: 128 DAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ 187 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 N + Q ++FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL PF A Sbjct: 188 NGVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKA 247 Query: 304 KDF 306 DF Sbjct: 248 DDF 250 >gi|118594541|ref|ZP_01551888.1| Signal recognition particle GTPase, FtsY protein [Methylophilales bacterium HTCC2181] gi|118440319|gb|EAV46946.1| Signal recognition particle GTPase, FtsY protein [Methylophilales bacterium HTCC2181] Length = 385 Score = 219 bits (557), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 118/301 (39%), Positives = 179/301 (59%), Gaps = 11/301 (3%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + K+ KG T KL +T++ S ++D+ EELE +L+ +D+G+ +L Sbjct: 85 FGFAEKIKKGLTKTREKLASPLTELFSFNKIDNSFYEELETILLTADVGIPAT-----DL 139 Query: 71 LTKRYAKDVSVQRVL--YDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKT 125 L V +++ + EL+ K ++ L P VI++VGVNG GKT Sbjct: 140 LISNVKASVQKDKIVDPKALKELLKKNMVALLSTVEEQLVVKKTSPFVIMMVGVNGTGKT 199 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K ++D V++AAGDTFR+AA++QL++W +R + E G D +A+ ++A Sbjct: 200 TTIGKLTKYLTDQNQSVLIAAGDTFRAAAVEQLQVWGERNKVSVISQETG-DPSAVIFDA 258 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+AKK+DV I DTAGRL L+ I K+ +V+ + APH V+ V+DA TGQNA Sbjct: 259 INSAKAKKIDVAIADTAGRLPTQKHLLDEITKIKKVMAKCHESAPHEVMLVIDANTGQNA 318 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + Q++ F+ G TGL++TK+DGTA+GG L I P+ F+GVGEGI+DL F AK+ Sbjct: 319 INQLKAFNEALGVTGLVITKLDGTAKGGILAAIAKEIPTPIRFIGVGEGIDDLRIFNAKE 378 Query: 306 F 306 + Sbjct: 379 Y 379 >gi|309389188|gb|ADO77068.1| signal recognition particle-docking protein FtsY [Halanaerobium praevalens DSM 2228] Length = 307 Score = 219 bits (557), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 121/299 (40%), Positives = 188/299 (62%), Gaps = 4/299 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + +++KL G T + +T+I + R +DD + EELE++LI++D+GV ++++ Sbjct: 1 MGFLQKLKAGLKKTKAGFVDKVTNIFTGRSNIDDQLFEELEEVLIQADVGVKTTFTLIDK 60 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L ++V+ L + K L+ + +++F++ ++I++VGVNG GKTT I Sbjct: 61 LKEDVDNEEVTEPEELMSYFQKELKELLQ-NDEGDFNFNNELNIIMMVGVNGAGKTTTIA 119 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KVMLAAGDTFR+ AI+QL+IW DR + + + GSDAAA+AY+A + A Sbjct: 120 KLAGRYKKEGKKVMLAAGDTFRAGAIEQLQIWGDRLGVNVISQQEGSDAAAVAYDAIQSA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH--APHSVLQVLDATTGQNALR 247 +AK VD+LI+DTAGRLH + LM + K+ RV++R A VL VLDATTGQNA+ Sbjct: 180 KAKDVDLLIVDTAGRLHTQTNLMKELKKVKRVIEREAEAIGAGVEVLLVLDATTGQNAIS 239 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++F+ G+ +TK+DGTA+GG +I + IP+ +GVGE DL+ F + F Sbjct: 240 QAKLFNQAVNVDGVALTKLDGTAKGGIVITVKNELDIPIKLIGVGEAAEDLQNFDPEQF 298 >gi|258592176|emb|CBE68485.1| Cell division transporter substrate-binding protein FtsY (Signal recognition particle receptor) [NC10 bacterium 'Dutch sediment'] Length = 314 Score = 219 bits (557), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 116/266 (43%), Positives = 171/266 (64%), Gaps = 8/266 (3%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVL-YDVSELIHKMLMPLSK 101 E LE+ LI +D G A+AQ+++ L + +D+S V+ L + + E++ + P Sbjct: 45 EALEEALIAADFGPALAQQLMTPLHQRLSRRDLSNLDQVEAALKHGILEILSGVAPP--- 101 Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 P D RP V+L +G+NG GKTT IGKL+ ++ G V+LA DTFR+AAI+QL +W Sbjct: 102 PSATDHQTRPQVLLFLGINGSGKTTTIGKLASRLIAEGGHVVLAGADTFRAAAIEQLGLW 161 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 R AD VC + G+D +A+ ++A + A ++ L+IDTAGRLH LM + K+ RV Sbjct: 162 GQRVGADVVCHQAGADPSAVVFDAVQAACSRGASHLLIDTAGRLHTKRNLMEELKKIQRV 221 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 + R P APH + VLDAT+G NAL Q + FH G TGLI+TK+DGTA+GG ++ I Sbjct: 222 VSRQIPDAPHQRIMVLDATSGLNALVQAKHFHEAVGLTGLILTKLDGTAKGGVVVAIADR 281 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFS 307 K+P+ F+G+GEG++DL+PFV + F+ Sbjct: 282 LKLPITFVGLGEGVDDLQPFVPETFT 307 >gi|189501986|ref|YP_001957703.1| hypothetical protein Aasi_0573 [Candidatus Amoebophilus asiaticus 5a2] gi|189497427|gb|ACE05974.1| hypothetical protein Aasi_0573 [Candidatus Amoebophilus asiaticus 5a2] Length = 311 Score = 219 bits (557), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 122/295 (41%), Positives = 181/295 (61%), Gaps = 6/295 (2%) Query: 15 RKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 KL K T ++ + +DD + + LE+LL+ +DIG+ KI++ LL Sbjct: 13 EKLDKALTPTKTSFWNNFNKVLVGKSTVDDEILDRLEELLLTADIGIDTTLKIID-LLEM 71 Query: 74 RYAKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 R A+D ++V + + E I ++ L++ + PH+IL+VG+NGVGKTT IGKL Sbjct: 72 RVARDKYLNVAELESILREEIESLITILNQA--EQNTALPHIILIVGINGVGKTTTIGKL 129 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + AG KV+L A DTFR+AAI+QLK+W +R V + +D +A+AY+ ++A Sbjct: 130 AALYKQAGKKVILGAADTFRAAAIEQLKMWGERVGVPVVAHSMHTDPSAVAYDTVQKAIQ 189 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 ++ DV IIDTAGRLH LM + K+ R +++L P APH +L VLDATTGQNA Q + Sbjct: 190 EQADVAIIDTAGRLHTKVNLMNELSKIRRTIEKLMPAAPHEILLVLDATTGQNAFIQTKA 249 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F GL++TK+DGTA+GG +I I+ +PV ++GVGE I+DL+ F K+F Sbjct: 250 FTEATAVNGLVVTKLDGTAKGGVVIGIIDQFHVPVKYIGVGEQIDDLQLFDEKEF 304 >gi|237740647|ref|ZP_04571128.1| signal recognition particle receptor FtsY [Fusobacterium sp. 2_1_31] gi|229422664|gb|EEO37711.1| signal recognition particle receptor FtsY [Fusobacterium sp. 2_1_31] Length = 362 Score = 219 bits (557), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 130/300 (43%), Positives = 186/300 (62%), Gaps = 11/300 (3%) Query: 15 RKLTK---GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 ++LTK GF S KLK T S ++DD + EELEDLLI+SD+G+ + ++ +L Sbjct: 68 QRLTKSKEGFFS---KLKNIFT---SKSKIDDSIYEELEDLLIQSDVGLGMTTNLINDLE 121 Query: 72 TKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K A +S +Y++ + L+ + L+ + +R +VIL+VGVNGVGKTT IGK Sbjct: 122 KKVKANKISETSEVYEILKGLMSEFLLSQDSKVHLK-DNRINVILIVGVNGVGKTTTIGK 180 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K G KV+L AGDTFR+AA++QL+ WA R D V G+D A++ Y+ +A+ Sbjct: 181 LALKYKKLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGREGADPASVVYDTLSKAE 240 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A K DV+IIDTAGRLHN + LM + K+ ++K+ + L V+D TTGQN L Q + Sbjct: 241 ATKADVVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESLLVIDGTTGQNGLNQAK 300 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F++V TG I+TK+DGTA+GG + + K P+ F+G+GE I DL F AKDF I Sbjct: 301 EFNSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIEDLIEFNAKDFVEAI 360 >gi|219681411|ref|YP_002467796.1| cell division protein FtsY [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219681967|ref|YP_002468351.1| cell division protein FtsY [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471085|ref|ZP_05635084.1| cell division protein FtsY [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219621700|gb|ACL29856.1| cell division protein FtsY [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624254|gb|ACL30409.1| cell division protein FtsY [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 378 Score = 219 bits (557), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 116/282 (41%), Positives = 176/282 (62%), Gaps = 6/282 (2%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87 L + I I S+++D+ + EELE+ ++ +DIG+ +I+ L+ +D+ LY Sbjct: 94 LGDKIYQIFLSKKIDEVLFEELEEKMLLADIGINTTNRIISNLIKDVNREDLKNSEKLYF 153 Query: 88 VSELIHKMLMPLSK---PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 + L KM L K P SH P VILVVGVNG GKTT + KL++K G +ML Sbjct: 154 L--LKRKMFNILKKVEIPLEIS-SHSPFVILVVGVNGTGKTTTVAKLAEKYKLEGKSIML 210 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 AA DTFR+A I+QL+ + + GSD AA+ ++A K A++KK+DVLIIDTAGR Sbjct: 211 AAADTFRAAGIEQLQTLGKLNNIPVIAQRSGSDPAAVIFDAVKSAKSKKIDVLIIDTAGR 270 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 LHN L+ + K++RV+K++D APH L ++D+ GQN ++Q E+FH TG+I+T Sbjct: 271 LHNKLHLIEELKKIVRVIKKIDISAPHEKLLIIDSCNGQNTIQQTEIFHKALNLTGIIIT 330 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 K+DGTA+GG + + +IP+ ++G+GE + DL F +++F Sbjct: 331 KLDGTAKGGVVFSLADQFQIPIRYIGIGEKMQDLGHFNSQEF 372 >gi|39996234|ref|NP_952185.1| cell division protein FtsY [Geobacter sulfurreducens PCA] gi|39983114|gb|AAR34508.1| cell division protein FtsY [Geobacter sulfurreducens PCA] gi|298505246|gb|ADI83969.1| signal recognition particle GTPase FtsY [Geobacter sulfurreducens KN400] Length = 350 Score = 219 bits (557), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 119/275 (43%), Positives = 174/275 (63%), Gaps = 6/275 (2%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIV---EELLTKRYAKDVSVQRVLYDVSEL 91 ++ + +D EELE++LI +D+GV +++ E+ L++ KD R + E Sbjct: 73 VLGKKEIDADTLEELEEILITADLGVQTTVELIRGLEQRLSRNELKDGEALR--EALKED 130 Query: 92 IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 IH L + + + P VI+V+GVNGVGKTT IGKL+ + + G KV+LAAGDTFR Sbjct: 131 IHGRLARDAHQLDVTGAS-PFVIMVIGVNGVGKTTTIGKLAARFTAQGKKVILAAGDTFR 189 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 +AA +QL+IW +RT D + + G+D +A+ +++ K A A+ D+LI+DTAGRLH L Sbjct: 190 AAAAEQLQIWGERTGVDVIRHKEGADPSAVVFDSIKAAVARGADILIVDTAGRLHTKVNL 249 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M + K+ R++ R P APH L VLDA TGQNAL Q ++F A TG+ +TK+DGTA+ Sbjct: 250 MEELKKVRRIMSREIPGAPHETLLVLDAATGQNALSQAKLFKEAAQVTGIALTKLDGTAK 309 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 GG ++ I +IPV ++GVGEGI+DL F F Sbjct: 310 GGIVVAICNEFRIPVRYIGVGEGIDDLRDFDPSQF 344 >gi|311085773|gb|ADP65855.1| cell division protein FtsY [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086350|gb|ADP66431.1| cell division protein FtsY [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 298 Score = 219 bits (557), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 116/282 (41%), Positives = 176/282 (62%), Gaps = 6/282 (2%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87 L + I I S+++D+ + EELE+ ++ +DIG+ +I+ L+ +D+ LY Sbjct: 14 LGDKIYQIFLSKKIDEVLFEELEEKMLLADIGINTTNRIISNLIKDVNREDLKNSEKLYF 73 Query: 88 VSELIHKMLMPLSK---PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 + L KM L K P SH P VILVVGVNG GKTT + KL++K G +ML Sbjct: 74 L--LKRKMFNILKKVEIPLEIS-SHSPFVILVVGVNGTGKTTTVAKLAEKYKLEGKSIML 130 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 AA DTFR+A I+QL+ + + GSD AA+ ++A K A++KK+DVLIIDTAGR Sbjct: 131 AAADTFRAAGIEQLQTLGKLNNIPVIAQRSGSDPAAVIFDAVKSAKSKKIDVLIIDTAGR 190 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 LHN L+ + K++RV+K++D APH L ++D+ GQN ++Q E+FH TG+I+T Sbjct: 191 LHNKLHLIEELKKIVRVIKKIDISAPHEKLLIIDSCNGQNTIQQTEIFHKALNLTGIIIT 250 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 K+DGTA+GG + + +IP+ ++G+GE + DL F +++F Sbjct: 251 KLDGTAKGGVVFSLADQFQIPIRYIGIGEKMQDLGHFNSQEF 292 >gi|294782274|ref|ZP_06747600.1| signal recognition particle-docking protein FtsY [Fusobacterium sp. 1_1_41FAA] gi|294480915|gb|EFG28690.1| signal recognition particle-docking protein FtsY [Fusobacterium sp. 1_1_41FAA] Length = 369 Score = 219 bits (557), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 130/300 (43%), Positives = 186/300 (62%), Gaps = 11/300 (3%) Query: 15 RKLTK---GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 ++LTK GF S KLK T S ++DD + EELEDLLI+SD+G+ + ++ +L Sbjct: 75 QRLTKSKEGFFS---KLKNIFT---SKSKIDDSIYEELEDLLIQSDVGLGMTTNLINDLE 128 Query: 72 TKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K A +S +Y++ + L+ + L+ + +R +VIL+VGVNGVGKTT IGK Sbjct: 129 KKVKANKISETSEVYEILKGLMSEFLLSQDSKVHLK-DNRINVILIVGVNGVGKTTTIGK 187 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K G KV+L AGDTFR+AA++QL+ WA R D V G+D A++ Y+ +A+ Sbjct: 188 LALKYKKLGKKVLLGAGDTFRAAAVEQLEEWARRADVDIVKGREGADPASVVYDTLSKAE 247 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A K DV+IIDTAGRLHN + LM + K+ ++K+ + L V+D TTGQN L Q + Sbjct: 248 ATKADVVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESLLVIDGTTGQNGLNQAK 307 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F++V TG I+TK+DGTA+GG + + K P+ F+G+GE I DL F AKDF I Sbjct: 308 EFNSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIEDLIEFNAKDFVEAI 367 >gi|311086926|gb|ADP67006.1| cell division protein FtsY [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 378 Score = 218 bits (556), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 116/282 (41%), Positives = 176/282 (62%), Gaps = 6/282 (2%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87 L + I I S+++D+ + EELE+ ++ +DIG+ +I+ L+ +D+ LY Sbjct: 94 LGDKIYQIFLSKKIDEVLFEELEEKMLLADIGINTTNRIISNLIKDVNREDLKNSEKLYF 153 Query: 88 VSELIHKMLMPLSK---PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 + L KM L K P SH P VILVVGVNG GKTT + KL++K G +ML Sbjct: 154 L--LKRKMFNILKKVEIPLEIS-SHSPFVILVVGVNGTGKTTTVAKLAEKYKLEGKSIML 210 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 AA DTFR+A I+QL+ + + GSD AA+ ++A K A++KK+DVLIIDTAGR Sbjct: 211 AAADTFRAAGIEQLQTLGKLNNIPVIAQRSGSDPAAVIFDAVKSAKSKKIDVLIIDTAGR 270 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 LHN L+ + K++RV+K++D APH L ++D+ GQN ++Q E+FH TG+I+T Sbjct: 271 LHNKLHLIEELKKIVRVIKKIDISAPHEKLLIIDSCNGQNTIQQTEIFHKALNLTGIIIT 330 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 K+DGTA+GG + + +IP+ ++G+GE + DL F +++F Sbjct: 331 KLDGTAKGGVVFSLADQFQIPIRYIGIGEKMQDLGHFNSQEF 372 >gi|58697425|ref|ZP_00372729.1| signal recognition particle-docking protein FtsY [Wolbachia endosymbiont of Drosophila simulans] gi|58536153|gb|EAL59753.1| signal recognition particle-docking protein FtsY [Wolbachia endosymbiont of Drosophila simulans] Length = 233 Score = 218 bits (556), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 109/222 (49%), Positives = 148/222 (66%), Gaps = 2/222 (0%) Query: 92 IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 I +L P+ +P + +PH+I+V GVNG GKTT IGKL+ K + VML A DTFR Sbjct: 13 IEAILNPVVQPL--ILNKKPHIIMVCGVNGNGKTTTIGKLAYKYKEMRKSVMLVACDTFR 70 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 +AA +QL IWA+R+ V E GSD+A++AY A QA VDV++IDTAGRL NN L Sbjct: 71 AAASEQLNIWAERSDCLIVTGEYGSDSASVAYRAVSQAIKDNVDVVLIDTAGRLQNNVNL 130 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M + K+ R +K+LD APH V+ VLDATTGQNA Q+E F + TGLI+TK+DGTA+ Sbjct: 131 MEELSKIYRTIKKLDGTAPHDVILVLDATTGQNAYSQLEAFSKMVNVTGLIVTKLDGTAK 190 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 GG +I + +KI ++ +G+GE I DL F +K+F+ + C Sbjct: 191 GGVVIGLAEAYKIKLHAIGIGENIEDLREFTSKEFAEALFNC 232 >gi|311087514|gb|ADP67593.1| cell division protein FtsY [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 298 Score = 218 bits (556), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 116/282 (41%), Positives = 176/282 (62%), Gaps = 6/282 (2%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87 L + I I S+++D+ + EELE+ ++ +DIG+ +I+ L+ +D+ LY Sbjct: 14 LGDKIYQIFLSKKIDEVLFEELEEKMLLADIGINTTNRIISNLIKDVNREDLKNSEKLYF 73 Query: 88 VSELIHKMLMPLSK---PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 + L KM L K P SH P VILVVGVNG GKTT + KL++K G +ML Sbjct: 74 L--LKRKMFNILKKVEIPLEIS-SHSPFVILVVGVNGAGKTTTVAKLAEKYKLEGKSIML 130 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 AA DTFR+A I+QL+ + + GSD AA+ ++A K A++KK+DVLIIDTAGR Sbjct: 131 AAADTFRAAGIEQLQTLGKLNNIPVIAQRSGSDPAAVIFDAVKSAKSKKIDVLIIDTAGR 190 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 LHN L+ + K++RV+K++D APH L ++D+ GQN ++Q E+FH TG+I+T Sbjct: 191 LHNKLHLIEELKKIVRVIKKIDISAPHEKLLIIDSCNGQNTIQQTEIFHKALNLTGIIIT 250 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 K+DGTA+GG + + +IP+ ++G+GE + DL F +++F Sbjct: 251 KLDGTAKGGVVFSLADQFQIPIRYIGIGEKMQDLGHFNSQEF 292 >gi|256847358|ref|ZP_05552804.1| signal recognition particle-docking protein FtsY [Lactobacillus coleohominis 101-4-CHN] gi|256716022|gb|EEU30997.1| signal recognition particle-docking protein FtsY [Lactobacillus coleohominis 101-4-CHN] Length = 444 Score = 218 bits (556), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 120/275 (43%), Positives = 167/275 (60%), Gaps = 10/275 (3%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R +D+ E+LEDL+I SD+G +A K+ + L R + + DVS +I + ++ Sbjct: 160 RHVDEDFFEDLEDLMIESDVGYDMAMKLSDSL---REEVKLQNAKSKQDVSNVIIQKMVE 216 Query: 99 LSKPFNWD------FSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 L D F+ P VI+ VGVNG GKTT IGK++ + + G KV+LAA DTFR Sbjct: 217 LYDDAGQDEQTGINFAQSGPTVIMFVGVNGAGKTTTIGKMAARFKNEGKKVLLAAADTFR 276 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 + A +QL +WA R D V D AA+ ++ K+A+A+ DVL +DTAGRL N L Sbjct: 277 AGATEQLDVWAKRDGVDIVTGPENGDPAAVVFDGVKKAKAEGYDVLFVDTAGRLQNKVNL 336 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M + KM R+L R P APH VL VLDATTGQNAL Q ++F TG+++TK+DGTAR Sbjct: 337 MNELAKMKRILTREIPDAPHEVLLVLDATTGQNALSQAKLFKESTDVTGIVLTKLDGTAR 396 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 GG ++ I +PV F+G+GE + DL+ F A +F Sbjct: 397 GGIVLAIRNELHLPVKFVGLGEKVTDLQEFDASEF 431 >gi|325269254|ref|ZP_08135873.1| cell division protein FtsY [Prevotella multiformis DSM 16608] gi|324988483|gb|EGC20447.1| cell division protein FtsY [Prevotella multiformis DSM 16608] Length = 316 Score = 218 bits (556), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 126/297 (42%), Positives = 183/297 (61%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG T + + ++ + ++DD V ++LE++L+ SD+GV KI+ + +R Sbjct: 15 LDKGLEKTKQNVFSKLARAVAGKSKVDDEVLDDLEEILVTSDVGVDTTIKIIHRI-EERV 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDF---SH-RPHVILVVGVNGVGKTTVIG 129 A+D VS + + I +L + N D+ H P+VILVVGVNGVGKTT IG Sbjct: 74 ARDKYVSTNELNDILKSEITALLTENNTGSNSDWVLPEHAHPYVILVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG KV L A DTFR+AA++Q++IW DR + ++G+D A++A++ + A Sbjct: 134 KLAYQFKQAGKKVYLGAADTFRAAAVEQIQIWGDRVGVPVIKQQMGADPASVAFDTLQSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A DV+IIDTAGRLHN LM + K+ V+K++ P APH VL VLD +TGQNA Q Sbjct: 194 KANGADVVIIDTAGRLHNKIGLMNELKKIKDVMKKVVPDAPHEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F AV T L +TK+DGTA+GG +I I K+PV ++G+GEG+ DL+ F F Sbjct: 254 RQFAAVTQITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQLFDKAQF 310 >gi|15616653|ref|NP_239865.1| cell division protein FtsY [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11386779|sp|P57137|FTSY_BUCAI RecName: Full=Cell division protein ftsY homolog gi|25535939|pir||G84932 cell division protein ftsY [imported] - Buchnera sp. (strain APS) gi|10038716|dbj|BAB12751.1| cell division protein ftsY [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 378 Score = 218 bits (556), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 116/282 (41%), Positives = 176/282 (62%), Gaps = 6/282 (2%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87 L + I I S+++D+ + EELE+ ++ +DIG+ +I+ L+ +D+ LY Sbjct: 94 LGDKIYQIFLSKKIDEVLFEELEEKMLLADIGINTTNRIISNLIKDVNREDLKNSEKLYF 153 Query: 88 VSELIHKMLMPLSK---PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 + L KM L K P SH P VILVVGVNG GKTT + KL++K G +ML Sbjct: 154 L--LKRKMFNILKKVEIPLEIS-SHSPFVILVVGVNGTGKTTTVAKLAEKYKLEGKSIML 210 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 AA DTFR+A I+QL+ + + GSD AA+ ++A K A++KK+DVLIIDTAGR Sbjct: 211 AAADTFRAAGIEQLQTLGKLNNIPVIAQRSGSDPAAVIFDAVKSAKSKKIDVLIIDTAGR 270 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 LHN L+ + K++RV+K++D APH L ++D+ GQN ++Q E+FH TG+I+T Sbjct: 271 LHNKLHLIEELKKIVRVIKKIDISAPHEKLLIIDSCNGQNTIQQTEIFHKALNLTGIIIT 330 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 K+DGTA+GG + + +IP+ ++G+GE + DL F +++F Sbjct: 331 KLDGTAKGGVVFSLADQFQIPIRYIGIGEKMQDLGHFNSQEF 372 >gi|34763139|ref|ZP_00144108.1| Cell division protein ftsY [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887202|gb|EAA24304.1| Cell division protein ftsY [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 344 Score = 218 bits (556), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 133/311 (42%), Positives = 196/311 (63%), Gaps = 14/311 (4%) Query: 3 NQKVA-SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 NQKV S+ L+ K +GF S KLK T S ++DD + EELEDLL++SD+G++ Sbjct: 43 NQKVNISQRLT---KSKEGFFS---KLKNIFT---SKSKVDDSIYEELEDLLLQSDVGLS 93 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL-SKPFNWDFSHRPHVILVVGV 119 + ++++L + +K V +Y++ L+ + L+ SK + D ++ +VIL+VGV Sbjct: 94 MTTNLIDQLEKEVKSKKVDNTEEVYEILKRLMSEFLLSQDSKIYLKD--NKINVILIVGV 151 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+ K + G KV+L AGDTFR+AA++QL+ WA R D V G+D A Sbjct: 152 NGVGKTTTIGKLALKYKNLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGREGADPA 211 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ Y+ +A++ K DV+IIDTAGRLHN + LM + K+ ++K+ + L V+D Sbjct: 212 SVVYDTLSRAESTKADVVIIDTAGRLHNKANLMRELEKINNIIKKKIREQEYESLLVIDG 271 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQN L Q + F++V TG I+TK+DGTA+GG + + K P+ F+G+GE I DL Sbjct: 272 TTGQNGLNQAKEFNSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIGDLI 331 Query: 300 PFVAKDFSAVI 310 F AKDF I Sbjct: 332 EFNAKDFVEAI 342 >gi|241661887|ref|YP_002980247.1| signal recognition particle-docking protein FtsY [Ralstonia pickettii 12D] gi|240863914|gb|ACS61575.1| signal recognition particle-docking protein FtsY [Ralstonia pickettii 12D] Length = 398 Score = 218 bits (555), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 124/301 (41%), Positives = 179/301 (59%), Gaps = 7/301 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W+ +L G + TS +G+T + ++D+ + EELE L+ +D GV + ++ EL Sbjct: 104 WMSRLRSGLSKTS----KGLTTLFVGVKVDEALFEELETALLMADAGVDATEYLLAELRR 159 Query: 73 KRYAKDVSVQR-VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + A+ + V + +L+ ++L PL K +P VI++ GVNG GKTT IGKL Sbjct: 160 RIKAQRIETSEGVKTALRDLLVELLHPLEKTMVLG-REQPMVIMIAGVNGAGKTTSIGKL 218 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 K G V+LAAGDTFR+AA +QL IW R + V E G D AA+ ++A A+A Sbjct: 219 CKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQESG-DPAAVIFDAVNAARA 277 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+++ DTAGRL LM + K+ RV + APH L V+D TGQNAL QV+ Sbjct: 278 RGIDIVMADTAGRLPTQLHLMEELKKVRRVTAKAMATAPHETLLVIDGNTGQNALAQVKA 337 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF A++F+ + Sbjct: 338 FDEALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFADALL 397 Query: 312 G 312 G Sbjct: 398 G 398 >gi|262037876|ref|ZP_06011306.1| signal recognition particle-docking protein FtsY [Leptotrichia goodfellowii F0264] gi|261748086|gb|EEY35495.1| signal recognition particle-docking protein FtsY [Leptotrichia goodfellowii F0264] Length = 354 Score = 218 bits (555), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 115/273 (42%), Positives = 174/273 (63%), Gaps = 5/273 (1%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLM 97 + +DD + EELE++LI+SDIG+ + ++VEEL + K + +YD + E++ + + Sbjct: 76 KTIDDDLYEELEEVLIQSDIGMNMTMQLVEELEKRVAKKKLKTSEEVYDELKEILKEKFI 135 Query: 98 P---LSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 L + D + ++ILVVGVNGVGKTT IGK++ K+ + G KV++ AGDTFR+A Sbjct: 136 SNNTLHDNIDLDLKDGQLNIILVVGVNGVGKTTSIGKIANKLINEGKKVIIGAGDTFRAA 195 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 AI+Q++ W RT A+ V GSD +A+ ++ A+ + DV IIDTAGRLHN LM Sbjct: 196 AIEQIEEWGKRTGAEVVKQSHGSDPSAVIFDTVSTAKNRSFDVAIIDTAGRLHNKRDLMN 255 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + K+ +++++ L V+D TTGQN L Q ++F+ + +G+I+TK DGTA+GG Sbjct: 256 ELEKINKIIRQQSGQEKFETLLVIDGTTGQNGLEQAKVFNEIVDLSGIILTKFDGTAKGG 315 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + PI K P+ F+GVGEGINDL F K+F Sbjct: 316 IIFPISEELKKPIKFIGVGEGINDLRKFNIKEF 348 >gi|17545105|ref|NP_518507.1| cell division protein [Ralstonia solanacearum GMI1000] gi|17427396|emb|CAD13914.1| putative cell division protein [Ralstonia solanacearum GMI1000] Length = 328 Score = 218 bits (555), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 124/301 (41%), Positives = 183/301 (60%), Gaps = 7/301 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W+ +L G + TS + +T + ++D+ + EELE L+ +D GV + +++EL Sbjct: 34 WMSRLRSGLSKTS----KSLTTLFVGVKVDEALFEELETALLMADAGVDATEYLLDELRR 89 Query: 73 KRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + A+ + + + V + +L+ ++L PL K +P VI++ GVNG GKTT IGKL Sbjct: 90 RVKAQRIETAEGVKTALRDLLIELLHPLEKTMVLG-RDQPTVIMIAGVNGAGKTTSIGKL 148 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 K G V+LAAGDTFR+AA +QL IW R + V E G D AA+ ++A A+A Sbjct: 149 CKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQESG-DPAAVIFDAVNAARA 207 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+++ DTAGRL LM + K+ RV+ + APH L V+DA TGQNAL QV+ Sbjct: 208 RGIDIVMADTAGRLPTQLHLMEELKKVRRVIGKAMATAPHETLLVIDANTGQNALAQVKA 267 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF A++F+ + Sbjct: 268 FDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFADALL 327 Query: 312 G 312 G Sbjct: 328 G 328 >gi|83746837|ref|ZP_00943884.1| FtsY [Ralstonia solanacearum UW551] gi|83726422|gb|EAP73553.1| FtsY [Ralstonia solanacearum UW551] Length = 328 Score = 218 bits (555), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 128/304 (42%), Positives = 182/304 (59%), Gaps = 13/304 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71 W+ +L G + TS + +T + ++D+ + EELE L+ +D GV + +++EL Sbjct: 34 WMSRLRSGLSKTS----KSLTTLFVGVKVDETLFEELETALLMADAGVDATEYLLDELRR 89 Query: 72 ---TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 T+R SV+ L D L+ ++L PL K +P VI++ GVNG GKTT I Sbjct: 90 RVKTQRIETAESVKTALRD---LLVELLHPLEKTMVLG-RDQPMVIMIAGVNGAGKTTSI 145 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL K G V+LAAGDTFR+AA +QL IW R + V E G D AA+ ++A Sbjct: 146 GKLCKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQESG-DPAAVIFDAVNA 204 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +D+++ DTAGRL LM + K+ RV+ + APH L V+DA TGQNAL Q Sbjct: 205 ARARGIDIVMADTAGRLPTQMHLMEELKKVRRVIGKAMVTAPHETLLVIDANTGQNALAQ 264 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 V+ F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF A++F+ Sbjct: 265 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFAD 324 Query: 309 VITG 312 + G Sbjct: 325 ALLG 328 >gi|268608884|ref|ZP_06142611.1| Signal recognition particle GTPase, FtsY [Ruminococcus flavefaciens FD-1] Length = 527 Score = 218 bits (555), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 130/298 (43%), Positives = 188/298 (63%), Gaps = 5/298 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + I+K+ G T L GI I++S +DD + ++LE+ +I SDIGV +++I ++ Sbjct: 1 MGIIKKIADGLRKTKDFLFGGIQRILNSFTEIDDELFDQLEEQMIMSDIGVETSEEICDQ 60 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPL-SKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L K + ++ + ++ ELIH+++ + D S P VI+V+GVNG GKTT I Sbjct: 61 LRKKIKERGITDPQ---EIMELIHEVVSEMMGDDTGLDLSVSPAVIMVIGVNGAGKTTTI 117 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKLS + G KV++AA DTFR+AAIDQL++W DR D V GSD A+ Y+A Sbjct: 118 GKLSHQFKQEGKKVLVAAADTFRAAAIDQLQVWTDRAGVDIVKHAEGSDPGAVVYDALDA 177 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 AQA+ DV+IIDTAGRLHN LM + K+ R++ + P + VL VLDATTGQNA+ Q Sbjct: 178 AQARGCDVVIIDTAGRLHNKKNLMDELAKINRIIDKKSPESSREVLLVLDATTGQNAVNQ 237 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F A +G+++TK+DGTA+GG +I I IPV +G+GE I DL+PF ++DF Sbjct: 238 ARLFSETAPISGIVLTKLDGTAKGGIVISIKNELGIPVKLIGIGEKIEDLQPFNSRDF 295 >gi|261879551|ref|ZP_06005978.1| signal recognition particle-docking protein FtsY [Prevotella bergensis DSM 17361] gi|270333777|gb|EFA44563.1| signal recognition particle-docking protein FtsY [Prevotella bergensis DSM 17361] Length = 315 Score = 218 bits (555), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 122/273 (44%), Positives = 173/273 (63%), Gaps = 7/273 (2%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLM 97 +D+ V + LE++LI SD+GV KI+E + +R A+D VS + + + I +L Sbjct: 39 EVDEDVLDNLEEVLITSDVGVDTTLKIIERI-EERVARDKYVSTSELNGILKDEIASLLT 97 Query: 98 PLSKPFN--WDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 + N W+ H P+VILVVGVNGVGKTT IGKL+ + AG KV L A DTFR+A Sbjct: 98 ENNSDDNDNWELPADHSPYVILVVGVNGVGKTTTIGKLAYQFKAAGKKVYLGAADTFRAA 157 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A++Q+ IW DR V ++G+D A++A++ + A+A DV++IDTAGRLHN LM Sbjct: 158 AVEQISIWGDRVGVPVVKQQMGADPASVAFDTLQSAKANGADVVLIDTAGRLHNKVGLMN 217 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + K+ V+K++ P AP VL VLD +TGQNA Q F AV T L +TK+DGTA+GG Sbjct: 218 ELKKIKDVMKKVVPSAPDEVLLVLDGSTGQNAFEQARQFSAVTQITSLAITKLDGTAKGG 277 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +I I K+PV ++G+GE + DL+ F K+F Sbjct: 278 VVIGISDQLKVPVKYIGLGEKMEDLQLFNRKEF 310 >gi|256422107|ref|YP_003122760.1| signal recognition particle-docking protein FtsY [Chitinophaga pinensis DSM 2588] gi|256037015|gb|ACU60559.1| signal recognition particle-docking protein FtsY [Chitinophaga pinensis DSM 2588] Length = 320 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 121/275 (44%), Positives = 174/275 (63%), Gaps = 13/275 (4%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-----VSVQRVLYDVSELIHKM 95 +D V + LE+ L+ +D+GV +I++ + KR +KD + ++L E I + Sbjct: 41 VDTEVLDSLEEALVSADVGVDTTVQIIDRI-EKRVSKDKYLGTAELNKIL---QEEIAGL 96 Query: 96 LM--PLS--KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 L+ P S + F+ +P+VI+VVGVNGVGKTT IGKL+ AG V+L A DTFR Sbjct: 97 LVDAPDSGFRDFDVPADKKPYVIMVVGVNGVGKTTTIGKLAYNFKKAGKSVLLGAADTFR 156 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 +AA+DQL IW+DR V ++GSD A+A++ + AK +V+IIDTAGRLHN + L Sbjct: 157 AAAVDQLTIWSDRVGVPIVKQQMGSDPGAVAFDTVQSGAAKGSEVIIIDTAGRLHNKAHL 216 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M + K+ RV+K++ P APH VL VLD +TGQNAL Q F A T L +TK+DGTA+ Sbjct: 217 MDELSKIKRVMKKVIPDAPHEVLLVLDGSTGQNALEQARHFTAATEVTALAITKLDGTAK 276 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 GG ++ I KIPV ++G+GE + DL+ F ++F Sbjct: 277 GGVVLAIANQFKIPVKYIGIGEKMEDLQVFSKEEF 311 >gi|160889556|ref|ZP_02070559.1| hypothetical protein BACUNI_01980 [Bacteroides uniformis ATCC 8492] gi|270296680|ref|ZP_06202879.1| signal recognition particle-docking protein FtsY [Bacteroides sp. D20] gi|317480048|ref|ZP_07939160.1| signal recognition particle-docking protein FtsY [Bacteroides sp. 4_1_36] gi|156861073|gb|EDO54504.1| hypothetical protein BACUNI_01980 [Bacteroides uniformis ATCC 8492] gi|270272667|gb|EFA18530.1| signal recognition particle-docking protein FtsY [Bacteroides sp. D20] gi|316903790|gb|EFV25632.1| signal recognition particle-docking protein FtsY [Bacteroides sp. 4_1_36] Length = 319 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 121/296 (40%), Positives = 179/296 (60%), Gaps = 6/296 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-- 73 L KG + T + I ++ + ++DD V + LE++LI SD+GV KI+E + + Sbjct: 15 LDKGLSKTKESVFGKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLKIIERIEKRAA 74 Query: 74 --RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +Y + +L D ++ L+ + F + +P+VI+VVGVNGVGKTT IGK Sbjct: 75 ADKYMNATELNHILRDEIAALLTENNSEDVDDFEAPIAKKPYVIMVVGVNGVGKTTTIGK 134 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + AG V L A DTFR+AA++QL IW +R V ++G+D A++A++ A Sbjct: 135 LAYQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVGVPVVKQKMGADPASVAFDTLSSAT 194 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A DV+IIDTAGRLHN LM + K+ V+K++ P AP+ VL VLD +TGQNA Q + Sbjct: 195 ANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGSTGQNAFEQAK 254 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F T + +TK+DGTA+GG +I I KIPV ++G+GEG+ DL+ F K+F Sbjct: 255 QFTLATEVTAMAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKKEF 310 >gi|94676923|ref|YP_588534.1| signal recognition particle-docking protein FtsY [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220073|gb|ABF14232.1| signal recognition particle-docking protein FtsY [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 354 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 115/301 (38%), Positives = 185/301 (61%), Gaps = 6/301 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W+ KL + +TS G+ + SS ++D+ + +++E L+ +D+G +KI++ L+T Sbjct: 54 WLSKLKRSLVNTSHHFSSGLMRLFSSTKIDNHLFDQIETQLLMADVGFETTKKILDSLIT 113 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLS---KPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + LY S+L M LS KP + + +P +IL+VGVNG GKTT IG Sbjct: 114 YVDHNKIKNTDALY--SKLRADMTAILSLVNKPLVIE-NKKPFIILMVGVNGAGKTTTIG 170 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 K++ + VMLAAGDTFR+AA++QL+ W + + V G+D+A++ +++ + A Sbjct: 171 KIAHQYQVEKKSVMLAAGDTFRAAAVEQLQAWGELNNIPVVAQHTGADSASVIFDSIQSA 230 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +DVLI DT+GRL NN LM + K++RV+K++D APH V+ +DA TGQNA++Q Sbjct: 231 KARGIDVLIADTSGRLQNNVSLMEELKKIVRVMKKIDIEAPHEVMLTIDAGTGQNAVQQA 290 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 +F+ TG+ +TK+DGTA+GG + I KIP+ ++ +GE I+DL F + F Sbjct: 291 LLFNKTIKITGITLTKLDGTAKGGVIFAIADQFKIPIRYISIGERISDLRAFNSNIFVEA 350 Query: 310 I 310 I Sbjct: 351 I 351 >gi|297181002|gb|ADI17203.1| hypothetical protein [uncultured delta proteobacterium HF0070_10I02] Length = 345 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 126/289 (43%), Positives = 172/289 (59%), Gaps = 7/289 (2%) Query: 20 GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79 G T L G+ +S +D E LE+ LI +D+GV A IVE + K D Sbjct: 48 GLGRTRTALASGLGHFFNSDANEDKRFEALEEALIGADVGVKTAMNIVEAV--KAECADP 105 Query: 80 SVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137 + VL +L+ ++ S D P VILVVGVNG GKTT IGKL+ + ++ Sbjct: 106 ADPEVLRAALKKQLLSRLTAETSIAVRED---GPLVILVVGVNGSGKTTTIGKLAHQYTE 162 Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197 G KV+LAAGDTFR+ AI+QL++W +R + + + G+D AA+ Y+ + A+K+DV+ Sbjct: 163 QGKKVLLAAGDTFRAGAIEQLQVWGERVNIPVIAHQEGADPAAVIYDGIQAGIARKMDVV 222 Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257 I DTAGRL S LM + K+ RV+ + P APH VL VLDAT GQNAL Q + F + G Sbjct: 223 ICDTAGRLQAQSQLMDELAKVARVMNKALPGAPHEVLLVLDATIGQNALSQAKAFKDLVG 282 Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TG+ +TK+DGTARGG ++ + IPV +G+GEGI DL PF A F Sbjct: 283 VTGVALTKLDGTARGGVVVAVQAEMGIPVKLVGLGEGIGDLRPFSATPF 331 >gi|207727827|ref|YP_002256221.1| cell division protein [Ralstonia solanacearum MolK2] gi|206591068|emb|CAQ56680.1| cell division protein [Ralstonia solanacearum MolK2] Length = 381 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 128/304 (42%), Positives = 182/304 (59%), Gaps = 13/304 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71 W+ +L G + TS + +T + ++D+ + EELE L+ +D GV + +++EL Sbjct: 87 WMSRLRSGLSKTS----KSLTTLFVGVKVDETLFEELETALLMADAGVDATEYLLDELRR 142 Query: 72 ---TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 T+R SV+ L D L+ ++L PL K +P VI++ GVNG GKTT I Sbjct: 143 RVKTQRIETAESVKTALRD---LLVELLHPLEKTMVLG-RDQPMVIMIAGVNGAGKTTSI 198 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL K G V+LAAGDTFR+AA +QL IW R + V E G D AA+ ++A Sbjct: 199 GKLCKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQESG-DPAAVIFDAVNA 257 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +D+++ DTAGRL LM + K+ RV+ + APH L V+DA TGQNAL Q Sbjct: 258 ARARGIDIVMADTAGRLPTQMHLMEELKKVRRVIGKAMVTAPHETLLVIDANTGQNALAQ 317 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 V+ F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF A++F+ Sbjct: 318 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFAD 377 Query: 309 VITG 312 + G Sbjct: 378 ALLG 381 >gi|189461330|ref|ZP_03010115.1| hypothetical protein BACCOP_01980 [Bacteroides coprocola DSM 17136] gi|189431859|gb|EDV00844.1| hypothetical protein BACCOP_01980 [Bacteroides coprocola DSM 17136] Length = 320 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 124/297 (41%), Positives = 181/297 (60%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG + T + I ++ + ++DD V + LE++LI SD+GV KI++ + KR Sbjct: 15 LDKGLSKTKESVFGKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLKIIKRI-EKRV 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPL----SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 A+D V+ Q + + E I +L S+ F +P+VI+VVGVNGVGKTT IG Sbjct: 74 AQDKYVNTQELNNILREEIAALLTENNTVDSEEFTVPEGKKPYVIMVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG V L A DTFR+AA++QL IW +R + ++GSD A++A++ A Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVGVPVIKQKMGSDPASVAFDTLSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A DV+IIDTAGRLHN LM + K+ V++++ P APH +L VLD +TGQNA Q Sbjct: 194 VANNADVVIIDTAGRLHNKIGLMNELTKIKNVMQKVVPDAPHEILLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F + +TK+DGTA+GG +I I KIPV ++G+GEGI DL+ F ++F Sbjct: 254 KQFTLATEVNAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGIEDLQIFRRREF 310 >gi|312797361|ref|YP_004030283.1| cell division protein ftsY [Burkholderia rhizoxinica HKI 454] gi|312169136|emb|CBW76139.1| Cell division protein ftsY [Burkholderia rhizoxinica HKI 454] Length = 553 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 128/302 (42%), Positives = 180/302 (59%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW+ +L G TS L T I ++D+ + EELE L+ +D GV +++ L Sbjct: 258 SWLSRLKSGLTKTSSSL----TGIFIGVKVDEALFEELETALLMADAGVDATTYLLDALR 313 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K R + Q+V + L+ ++L PL + + P V+++ GVNG GKTT IGK Sbjct: 314 QKVRSERLTDAQQVKAALRTLLIELLRPLEQSMVLGRAQ-PLVMMIAGVNGAGKTTSIGK 372 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + VMLAAGDTFR+AA +QL IW R + + E G D AA+ ++A A+ Sbjct: 373 LAKHLQSFNQSVMLAAGDTFRAAAREQLVIWGQRNNVAVIQQESG-DPAAVIFDAVGAAR 431 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DVL+ DTAGRL LM + K+ RV+ + APH +L VLDA TGQNAL QV+ Sbjct: 432 ARGIDVLMADTAGRLPTQLHLMEELRKVKRVIGKAMDGAPHEILLVLDANTGQNALAQVK 491 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TG+I+TK+DGTA+GG L I +PVYF+GVGE + DL+PFVA +F+ + Sbjct: 492 AFDEALGLTGIIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFVAAEFADAL 551 Query: 311 TG 312 G Sbjct: 552 LG 553 >gi|187927348|ref|YP_001897835.1| signal recognition particle-docking protein FtsY [Ralstonia pickettii 12J] gi|309779951|ref|ZP_07674705.1| signal recognition particle-docking protein FtsY [Ralstonia sp. 5_7_47FAA] gi|187724238|gb|ACD25403.1| signal recognition particle-docking protein FtsY [Ralstonia pickettii 12J] gi|308921310|gb|EFP66953.1| signal recognition particle-docking protein FtsY [Ralstonia sp. 5_7_47FAA] Length = 394 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 124/301 (41%), Positives = 181/301 (60%), Gaps = 7/301 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W+ +L G + TS +G+T + ++D+ + EELE L+ +D GV + ++ EL Sbjct: 100 WMSRLRSGLSKTS----KGLTTLFVGVKVDEALFEELETALLMADAGVDATEYLLGELRR 155 Query: 73 KRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + A+ + + + V + +L+ ++L PL K +P VI++ GVNG GKTT IGKL Sbjct: 156 RIKAQRIETAEGVKTALRDLLVELLHPLEKTMVLG-REQPMVIMIAGVNGAGKTTSIGKL 214 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 K G V+LAAGDTFR+AA +QL IW R + V E G D AA+ ++A A+A Sbjct: 215 CKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQESG-DPAAVIFDAVNAARA 273 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+++ DTAGRL LM + K+ RV + APH L V+D TGQNAL QV+ Sbjct: 274 RGIDIVMADTAGRLPTQLHLMEELKKVRRVTAKAMATAPHETLLVIDGNTGQNALAQVKA 333 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF A++F+ + Sbjct: 334 FDEALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFADALL 393 Query: 312 G 312 G Sbjct: 394 G 394 >gi|94309226|ref|YP_582436.1| signal recognition particle-docking protein FtsY [Cupriavidus metallidurans CH34] gi|93353078|gb|ABF07167.1| probable cell division protein; signal recognition particle receptor FtsY [Cupriavidus metallidurans CH34] Length = 340 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 126/310 (40%), Positives = 181/310 (58%), Gaps = 9/310 (2%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 + A W+ +L G + TS I + ++D+ + EELE L+ +D GV + Sbjct: 38 QTAEAKRGWMSRLRAGLSKTS----RNIGVLFVGVKVDEALFEELETALLMADAGVEATE 93 Query: 65 KIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 ++ EL +R D + + V + +L+ ++L PL K +P V+++ GVNG Sbjct: 94 YLLGEL-RRRIKNDRIETAEGVKAALKDLLTQLLKPLEKTMELG-REQPLVMMIAGVNGA 151 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL K V+LAAGDTFR+AA +QL IW +R + V E G D AA+ Sbjct: 152 GKTTSIGKLCKHFQSYHQSVLLAAGDTFRAAAREQLTIWGERNNVTVVAQESG-DPAAVI 210 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A A+A+K+D+++ DTAGRL LM + K+ RV+ + P APH VL V+DA TG Sbjct: 211 FDAVNAARARKIDIVMADTAGRLPTQLHLMEELKKVKRVIGKSMPTAPHEVLLVIDANTG 270 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL Q F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF Sbjct: 271 QNALAQTRAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFK 330 Query: 303 AKDFSAVITG 312 A +F+ + G Sbjct: 331 ADEFAEALLG 340 >gi|52785575|ref|YP_091404.1| hypothetical protein BLi01816 [Bacillus licheniformis ATCC 14580] gi|163119430|ref|YP_078989.2| signal recognition particle (docking protein) [Bacillus licheniformis ATCC 14580] gi|319646023|ref|ZP_08000253.1| FtsY protein [Bacillus sp. BT1B_CT2] gi|52348077|gb|AAU40711.1| FtsY [Bacillus licheniformis ATCC 14580] gi|145902937|gb|AAU23351.2| signal recognition particle (docking protein) [Bacillus licheniformis ATCC 14580] gi|317391773|gb|EFV72570.1| FtsY protein [Bacillus sp. BT1B_CT2] Length = 328 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 127/310 (40%), Positives = 197/310 (63%), Gaps = 10/310 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K+ ++ S K +G A T +E + +++S R++D+ EELE++LI +D+GVA Sbjct: 9 EKITQQTDSVSGKFKEGLAKTRNTFQERVNELVSRYRKVDEDFFEELEEVLIGADVGVAT 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH------RPHVILV 116 ++++EL ++ +++ + +V +I + L+ + + + S R ++IL Sbjct: 69 VMELIDELKSEVKRRNIQDPK---EVQSVISEKLVEIYEGGEQEASELRVEDGRLNIILF 125 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGKL+ + G V+LAAGDTFR+ AIDQL++W +R A V GS Sbjct: 126 VGVNGVGKTTTIGKLAHQFIKEGKNVVLAAGDTFRAGAIDQLEVWGERVGAHVVKQAEGS 185 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D AA+ Y+A + A+A+ DVL+ DTAGRL N LM + K+ RV++R P APH VL V Sbjct: 186 DPAAVIYDAVQAAKARGADVLLCDTAGRLQNKVNLMKELEKVKRVIQREVPDAPHEVLLV 245 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDATTGQNA+ Q F +G+++TK+DGTA+GG ++ I +IPV F+G+GE ++ Sbjct: 246 LDATTGQNAMTQAREFSKATDVSGIVLTKLDGTAKGGIVLAIRHELQIPVKFVGLGEKMD 305 Query: 297 DLEPFVAKDF 306 DL+PF A+ + Sbjct: 306 DLQPFEAESY 315 >gi|91215248|ref|ZP_01252220.1| signal recognition particle-docking protein FtsY [Psychroflexus torquis ATCC 700755] gi|91186853|gb|EAS73224.1| signal recognition particle-docking protein FtsY [Psychroflexus torquis ATCC 700755] Length = 319 Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 119/276 (43%), Positives = 176/276 (63%), Gaps = 13/276 (4%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYD-----VSE 90 ++D+ V ++LE++L+ SD+G+ KI+ + + +Y + +L + +SE Sbjct: 40 KVDESVLDDLEEILVSSDVGITTTIKIINRIEARVAKNKYLGTDELNLILREEIAGLLSE 99 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + L L P S +P+VI+VVGVNGVGKTT IGKL+K G KV+L AGDTF Sbjct: 100 SENGELESLELPE----SKKPYVIMVVGVNGVGKTTTIGKLAKHYKLKGKKVVLGAGDTF 155 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R+AA++QL+IWADR V ++GSD A++A++ + A + D++I+DTAGRLHN Sbjct: 156 RAAAVEQLQIWADRVGVPIVKQKMGSDPASVAFDTVQSAIKQNADIVILDTAGRLHNKVN 215 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + K+ RV++++ P+ P VL VLD +TGQNA Q + F A T L +TK+DGTA Sbjct: 216 LMNELIKIKRVMQKVIPNIPDEVLLVLDGSTGQNAFEQAKQFTAATQVTALAITKLDGTA 275 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +GG +I I KIPV ++GVGEGI+DL+ F +F Sbjct: 276 KGGVVIGISDQFKIPVKYIGVGEGIDDLQIFNKYEF 311 >gi|207742231|ref|YP_002258623.1| cell division protein [Ralstonia solanacearum IPO1609] gi|206593619|emb|CAQ60546.1| cell division protein [Ralstonia solanacearum IPO1609] Length = 377 Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 128/304 (42%), Positives = 182/304 (59%), Gaps = 13/304 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71 W+ +L G + TS + +T + ++D+ + EELE L+ +D GV + +++EL Sbjct: 83 WMSRLRSGLSKTS----KSLTTLFVGVKVDETLFEELETALLMADAGVDATEYLLDELRR 138 Query: 72 ---TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 T+R SV+ L D L+ ++L PL K +P VI++ GVNG GKTT I Sbjct: 139 RVKTQRIETAESVKTALRD---LLVELLHPLEKTMVLG-RDQPMVIMIAGVNGAGKTTSI 194 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL K G V+LAAGDTFR+AA +QL IW R + V E G D AA+ ++A Sbjct: 195 GKLCKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQESG-DPAAVIFDAVNA 253 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +D+++ DTAGRL LM + K+ RV+ + APH L V+DA TGQNAL Q Sbjct: 254 ARARGIDIVMADTAGRLPTQMHLMEELKKVRRVIGKAMVTAPHETLLVIDANTGQNALAQ 313 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 V+ F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF A++F+ Sbjct: 314 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFAD 373 Query: 309 VITG 312 + G Sbjct: 374 ALLG 377 >gi|300705260|ref|YP_003746863.1| signal recognition particle (srp) GTPase [Ralstonia solanacearum CFBP2957] gi|299072924|emb|CBJ44280.1| Signal recognition particle (SRP) GTPase [Ralstonia solanacearum CFBP2957] Length = 387 Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 124/301 (41%), Positives = 182/301 (60%), Gaps = 7/301 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W+ +L G + TS + +T + ++D+ + EELE L+ +D GV + ++ EL Sbjct: 93 WMSRLRSGLSKTS----KSLTTLFVGVKVDEALFEELETALLMADAGVDATEYLLNELRR 148 Query: 73 KRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + A+ + + + V + +L+ ++L PL K +P VI++ GVNG GKTT IGKL Sbjct: 149 RVKAQRIETAESVKTALRDLLIELLHPLEKTMVLG-RDQPMVIMIAGVNGAGKTTSIGKL 207 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 K G V+LAAGDTFR+AA +QL IW R + V E G D AA+ ++A A+A Sbjct: 208 CKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQESG-DPAAVIFDAVNAARA 266 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D+++ DTAGRL LM + K+ RV+ + APH L V+DA TGQNAL QV+ Sbjct: 267 RGIDIVMADTAGRLPTQLHLMEELKKVRRVIGKAMVTAPHETLLVIDANTGQNALAQVKA 326 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF A++F+ + Sbjct: 327 FDDTLGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFADALL 386 Query: 312 G 312 G Sbjct: 387 G 387 >gi|256750715|ref|ZP_05491600.1| signal recognition particle-docking protein FtsY [Thermoanaerobacter ethanolicus CCSD1] gi|256750298|gb|EEU63317.1| signal recognition particle-docking protein FtsY [Thermoanaerobacter ethanolicus CCSD1] Length = 284 Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 115/262 (43%), Positives = 169/262 (64%), Gaps = 16/262 (6%) Query: 56 SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFS 108 +DIG++ KI+E + K + +R +YD S++ ++++L +PF Sbjct: 30 ADIGISTTSKIIEGIRQK------AKERKIYDASQIKELLAEEVYEILQKDVEPFTL--- 80 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P VIL VGVNGVGKTT IGKL+ G KVMLAAGDTFR+AAIDQL+IWA+R + Sbjct: 81 TSPMVILNVGVNGVGKTTTIGKLAYLYKKEGKKVMLAAGDTFRAAAIDQLEIWAERVNCP 140 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + + GSD A++ ++ + ++A+ +D+LI DTAGRLHN LM + K+ +V+ R P Sbjct: 141 IIKHQEGSDPASVIFDGIQASKARGIDILICDTAGRLHNKKNLMEELRKIRKVIDREYPE 200 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 A VLDATTGQNAL+Q ++F V+ TG+++TK+DGTA+GG ++ I +P+ + Sbjct: 201 ARVETFLVLDATTGQNALQQAKIFKEVSDITGIVLTKLDGTAKGGIVVAIKSELNVPIRY 260 Query: 289 LGVGEGINDLEPFVAKDFSAVI 310 +G+GEGI DL+ F AK F + I Sbjct: 261 IGIGEGIEDLQAFDAKSFVSAI 282 >gi|218131134|ref|ZP_03459938.1| hypothetical protein BACEGG_02739 [Bacteroides eggerthii DSM 20697] gi|217986654|gb|EEC52988.1| hypothetical protein BACEGG_02739 [Bacteroides eggerthii DSM 20697] Length = 319 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 122/296 (41%), Positives = 179/296 (60%), Gaps = 6/296 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-- 73 L KG + T + I ++ + ++DD V + LE++LI SD+GV KI+E + + Sbjct: 15 LDKGLSKTKESVFGKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLKIIERIEKRAA 74 Query: 74 --RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +Y + +L D ++ L+ + F + +P+VI+VVGVNGVGKTT IGK Sbjct: 75 DEKYMNAQELNMILRDEIAALLTENNSDDVDDFETPITKKPYVIMVVGVNGVGKTTTIGK 134 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + AG V L A DTFR+AA++QL IW +R V ++GSD A++A++ A Sbjct: 135 LAYQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVGVPVVKQKMGSDPASVAFDTLSSAV 194 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A DV+IIDTAGRLHN LM + K+ V+K++ P AP+ VL VLD +TGQNA Q + Sbjct: 195 ANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGSTGQNAFEQAK 254 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F T + +TK+DGTA+GG +I I KIPV ++G+GEG+ DL+ F K+F Sbjct: 255 QFTLATEVTAMAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKKEF 310 >gi|163790807|ref|ZP_02185232.1| signal recognition particle-docking protein FtsY [Carnobacterium sp. AT7] gi|159873875|gb|EDP67954.1| signal recognition particle-docking protein FtsY [Carnobacterium sp. AT7] Length = 332 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 120/308 (38%), Positives = 183/308 (59%), Gaps = 16/308 (5%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67 E+ K KG T + + ++ ++ R +D+ +ELE++LI +D+G +I Sbjct: 18 ETTEVTEKYEKGLEKTRKTFSQRMNELFANFRTVDEDFFDELEEVLIGADVGFESTMEIT 77 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH---------VILVVG 118 + L + K+ +V ++I + ++ + + N D +P VIL+VG Sbjct: 78 DALRQEVKLKNAKASN---EVQQVIIEKMVEIYEKGNTD---KPEININPAGLTVILLVG 131 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNGVGKTT IGK++ G KVMLAAGDTFR+ AI+QL +W DR A+ V + G D Sbjct: 132 VNGVGKTTTIGKMAHLYQQEGKKVMLAAGDTFRAGAIEQLHVWGDRVGAEVVSGKAGGDP 191 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A K+A+ K+ D+L +DTAGRL N LM + KM R+++R P PH VL VLD Sbjct: 192 AAVVFDAIKEAKQKEADILFVDTAGRLQNKVNLMNELEKMKRIIEREIPGGPHEVLLVLD 251 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 ATTGQNA+ Q + F TG+++TK+DGTA+GG ++ I IPV F+G+GE ++DL Sbjct: 252 ATTGQNAMNQAKQFKQTTDVTGIVLTKLDGTAKGGIVLAIRKELDIPVKFVGLGESMDDL 311 Query: 299 EPFVAKDF 306 + F ++ Sbjct: 312 QVFDPNEY 319 >gi|301163426|emb|CBW22977.1| putative recognition particle-docking protein [Bacteroides fragilis 638R] Length = 319 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 124/297 (41%), Positives = 181/297 (60%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG + T + I ++ + ++DD V + LE++LI SD+GV I++ + KR Sbjct: 15 LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRA 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVNGVGKTTVIG 129 A+D V+ Q + + E I +L + DF +P+VI+VVGVNGVGKTT IG Sbjct: 74 AEDKYVNTQELNSILREEIAALLTENNSDDVADFDVPVEKKPYVIMVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG V L A DTFR+AA++QL IW +R + ++G+D A++A++ A Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVDVPVIKQKMGADPASVAFDTLSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A DV+IIDTAGRLHN LM + K+ V+K++ P AP+ VL VLD +TGQNA Q Sbjct: 194 VANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F T + +TK+DGTA+GG +I I KIPV ++G+GEG+ DL+ F K+F Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVIIGISDQFKIPVKYIGLGEGMEDLQVFRKKEF 310 >gi|224540007|ref|ZP_03680546.1| hypothetical protein BACCELL_04919 [Bacteroides cellulosilyticus DSM 14838] gi|224518374|gb|EEF87479.1| hypothetical protein BACCELL_04919 [Bacteroides cellulosilyticus DSM 14838] Length = 319 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 120/296 (40%), Positives = 179/296 (60%), Gaps = 6/296 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVA----VAQKIVEELL 71 L KG + T + I +++ + ++DD V + LE++LI SD+GV + Q+I + Sbjct: 15 LDKGLSKTKESVFGKIARVVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIQRIEKRAA 74 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +++Y + +L D ++ L+ + F +P+VI+VVGVNGVGKTT IGK Sbjct: 75 SEKYMNAQELNTILRDEIAALLTENNSDDVDDFEAPIEKKPYVIMVVGVNGVGKTTTIGK 134 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + AG V L A DTFR+AA++QL IW R + ++G+D A++AY+ A Sbjct: 135 LAYQFKKAGKSVYLGAADTFRAAAVEQLDIWGSRVGVPVIKQKMGADPASVAYDTLNSAV 194 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A DV+IIDTAGRLHN LM + K+ V+K++ P AP+ VL VLD +TGQNA Q + Sbjct: 195 ANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGSTGQNAFEQAK 254 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F T + +TK+DGTA+GG +I I KIPV ++G+GEG+ DL+ F K+F Sbjct: 255 QFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKKEF 310 >gi|297569034|ref|YP_003690378.1| signal recognition particle-docking protein FtsY [Desulfurivibrio alkaliphilus AHT2] gi|296924949|gb|ADH85759.1| signal recognition particle-docking protein FtsY [Desulfurivibrio alkaliphilus AHT2] Length = 397 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 116/306 (37%), Positives = 187/306 (61%), Gaps = 21/306 (6%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVE--- 68 + +L +G + T L + ++ ++ +D + +ELE++LI +D+G A +++E Sbjct: 71 FFNRLRQGLSRTRENLVSRMDELFLGKKVIDAELFDELEEILITADLGTATTHELLERAR 130 Query: 69 -----ELLTKRYAKDVSVQRVLYDV---SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + L+ A + +Q++L D ++ +++MP S PF VI+V+GVN Sbjct: 131 EQVKRDQLSDPKALEGILQQLLQDYLVQADRPAELVMPASGPF---------VIMVLGVN 181 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT IGKL+ K AG +V+L A DTFR+AAI+QL+ W R A+ + + G+D ++ Sbjct: 182 GVGKTTTIGKLAYKFKQAGQQVLLVAADTFRAAAIEQLQAWGQRVDAEVIAQQQGADPSS 241 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + Y+AF A+ + DV+I+DTAGRLH LM + K+ RV+ + P APH V+ V+DAT Sbjct: 242 VIYDAFDYARPRNFDVIIVDTAGRLHTKVNLMEELRKIKRVMNQKIPGAPHEVMLVIDAT 301 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQN + Q +FH +G+ +TK+DGT+RGG ++ I KIP+ F+G+GE + DL Sbjct: 302 TGQNGISQARLFHEAVEVSGIALTKLDGTSRGGIVVNICREFKIPIRFVGIGEQMEDLRD 361 Query: 301 FVAKDF 306 F ++F Sbjct: 362 FEPREF 367 >gi|224024936|ref|ZP_03643302.1| hypothetical protein BACCOPRO_01667 [Bacteroides coprophilus DSM 18228] gi|224018172|gb|EEF76170.1| hypothetical protein BACCOPRO_01667 [Bacteroides coprophilus DSM 18228] Length = 321 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 124/297 (41%), Positives = 182/297 (61%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG + T + I ++ + ++DD V + LE++LI SD+GV I++ + R Sbjct: 15 LDKGLSKTKESVFGKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EARV 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIG 129 A+D V+ Q + + E I +L + + DFS +P+VI+VVGVNGVGKTT IG Sbjct: 74 ARDKYVNTQELNNILREEIAALLTENNTVDSEDFSVPEDKKPYVIMVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG V L A DTFR+AA++QL IW +R V ++G+D A++A++ A Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVGVPVVKQKMGADPASVAFDTLSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A + DV+IIDTAGRLHN LM + K+ V++++ P APH VL VLD +TGQNA Q Sbjct: 194 VANQADVVIIDTAGRLHNKIGLMNELTKIKNVMRKVVPDAPHEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F + +TK+DGTA+GG +I I KIPV ++G+GEGI DL+ F ++F Sbjct: 254 KQFTLATEVNAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGIEDLQVFRRREF 310 >gi|315648179|ref|ZP_07901280.1| signal recognition particle-docking protein FtsY [Paenibacillus vortex V453] gi|315276825|gb|EFU40168.1| signal recognition particle-docking protein FtsY [Paenibacillus vortex V453] Length = 333 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 196/311 (63%), Gaps = 14/311 (4%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAV 62 + ++S++ + ++ G T E ++D +I +++D+ EELE++LI +D+GV Sbjct: 9 ESISSKTENVTKQFRDGLEKTRKGFIEKVSDLVIRRKKIDEEFYEELEEILIGADVGVNT 68 Query: 63 AQKIVEEL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPH---VIL 115 ++++L + KR +D + D+ ++ + LM L + + + P VIL Sbjct: 69 VMDLMDDLRAEVKKRRIEDAA------DLQPVLSEKLMGLLRDDSSNELRENPDGITVIL 122 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGKL+ + G KVMLAAGDTFR+ AI+QL++W +R + + + G Sbjct: 123 FVGVNGVGKTTTIGKLAHRYKQEGKKVMLAAGDTFRAGAIEQLEVWGERVGVEVIKQQPG 182 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ ++A + A+ ++ D+LI DTAGRL N + LM + K+ RV++R P APH VL Sbjct: 183 SDPAAVMFDAVQAAKQRQADILICDTAGRLQNKTNLMEELNKIFRVIQREIPSAPHEVLM 242 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 VLDATTGQNAL Q ++F +G TGL++TK+DGTA+GG +I I +PV +G+GE + Sbjct: 243 VLDATTGQNALSQAKLFGEKSGVTGLVLTKLDGTAKGGIVIAIRQELNLPVKLVGLGEKM 302 Query: 296 NDLEPFVAKDF 306 DL+ F ++ F Sbjct: 303 GDLQTFDSEQF 313 >gi|323489556|ref|ZP_08094783.1| cell division protein ftsY-like protein [Planococcus donghaensis MPA1U2] gi|323396687|gb|EGA89506.1| cell division protein ftsY-like protein [Planococcus donghaensis MPA1U2] Length = 338 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 130/305 (42%), Positives = 192/305 (62%), Gaps = 9/305 (2%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66 +E+ K +G A T + I D+++ R++D+ EELE++L+++D+G ++ Sbjct: 15 AEAEESTEKYKEGLAKTRIGFTSKINDLVAKYRKVDEDFFEELEEILLQADVGFETVIEL 74 Query: 67 VEEL---LTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNW-DFSHRPHVILVVGVNG 121 +++L + ++ KD S VQ V +SE + ++ N +F VIL+VGVNG Sbjct: 75 MDDLRFEVQRKNVKDTSNVQSV---ISEKLVEIYEAGEAEINEINFVEGLTVILMVGVNG 131 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT IGKL+ + + G VMLAAGDTFR+ AI+QL +W R D + GSD AA+ Sbjct: 132 VGKTTTIGKLAHRFKNEGKTVMLAAGDTFRAGAIEQLDVWGKRVGVDVIKQSEGSDPAAV 191 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 Y+A + A+++ VDVLI DTAGRL N LM + K+ RV+ R P APH VL LDATT Sbjct: 192 MYDAVRSAKSRGVDVLICDTAGRLQNKVNLMNELQKVHRVISREIPGAPHEVLLALDATT 251 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q + F V TG+++TK+DGTA+GG ++ I KIPV F+G+GE ++DL+PF Sbjct: 252 GQNAMLQAQTFKEVTDVTGIVLTKLDGTAKGGIVLAIRNKLKIPVKFVGLGEKMDDLQPF 311 Query: 302 VAKDF 306 A+ + Sbjct: 312 DAQKY 316 >gi|313203647|ref|YP_004042304.1| signal recognition particle-docking protein ftsy [Paludibacter propionicigenes WB4] gi|312442963|gb|ADQ79319.1| signal recognition particle-docking protein FtsY [Paludibacter propionicigenes WB4] Length = 316 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 120/292 (41%), Positives = 180/292 (61%), Gaps = 8/292 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L +G + T + +T ++ + ++DD V + LE++LI SD+GV +I+E + KR Sbjct: 15 LDQGLSKTKESVFSKLTRAVAGKSKVDDEVLDNLEEVLITSDVGVETTLRIIERI-EKRV 73 Query: 76 AKDVSVQR------VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 A+D V + +++ L+ + F+ + P+VI+VVGVNGVGKTT IG Sbjct: 74 AQDKYVNTSELNGILKQEIAGLLAENNSDTPIDFDAELPTTPYVIMVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + + AG KV L A DTFR+AA+DQL IW +R + ++G+D A++AY+ A Sbjct: 134 KLAHQFTKAGKKVYLGAADTFRAAAVDQLVIWGERAGVPVIKQKMGADPASVAYDTIASA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A DV+IIDTAGRLHN LM + K+ V++++ P AP+ VL VLD +TGQNA Q Sbjct: 194 KANNADVVIIDTAGRLHNKINLMNELTKIKNVMQKVVPSAPNEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F T L +TK+DGTA+GG +I I KIPV ++G+GEG+ L+ F Sbjct: 254 KQFTKATDVTALAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEHLQVF 305 >gi|163782277|ref|ZP_02177275.1| cell division protein FtsY [Hydrogenivirga sp. 128-5-R1-1] gi|159882310|gb|EDP75816.1| cell division protein FtsY [Hydrogenivirga sp. 128-5-R1-1] Length = 460 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 119/302 (39%), Positives = 188/302 (62%), Gaps = 3/302 (0%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 V + S + KL KG T ++ GI + R++DD + EELE+LL+++D+GV A Sbjct: 155 VEEKKESLLDKLKKGLRKTKESVEFGI--VFRGRKVDDELFEELEELLVKADVGVKTAVN 212 Query: 66 IVEELLTKRYAKDVSVQRVLYDVS-ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 +VE+L K++ L +++ E + ++L N +P V+L +GVNG GK Sbjct: 213 LVEDLRKTAIRKNIKSSEELKEITKEKVKELLRGCEGKLNLPTEKKPVVVLFLGVNGSGK 272 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+ + + G +V+L A DTFR+AAI+QL++WA R+ AD G+D A++ YE Sbjct: 273 TTTIGKLAHRFTKEGKRVLLVAADTFRAAAIEQLEVWAQRSGADITKKHEGADPASVVYE 332 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 +A + DV++IDTAGRLH L+ + K+ +V+++L P P L VLDAT GQN Sbjct: 333 GVDRAIREGHDVVLIDTAGRLHTKEPLIQELRKVKKVIQKLAPEEPSETLLVLDATIGQN 392 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 +++Q ++F +G+++TK+DG+A+GG +I I KIP+ +GVGEGI+DL+PF Sbjct: 393 SIQQAKVFKEAVDISGIVVTKLDGSAKGGAVIAICRELKIPIKLIGVGEGIDDLQPFSVD 452 Query: 305 DF 306 ++ Sbjct: 453 EY 454 >gi|325297731|ref|YP_004257648.1| signal recognition particle-docking protein FtsY [Bacteroides salanitronis DSM 18170] gi|324317284|gb|ADY35175.1| signal recognition particle-docking protein FtsY [Bacteroides salanitronis DSM 18170] Length = 320 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 124/306 (40%), Positives = 183/306 (59%), Gaps = 8/306 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG + T + I I+ + ++DD V + LE++LI SD+GV KI++ + KR Sbjct: 15 LDKGLSKTKESVFGKIARAIAGKSKVDDEVLDNLEEVLITSDVGVETTLKIIKRI-EKRV 73 Query: 76 AKDVSVQR------VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 A+D V + +++ L+ + ++ FN P+VI+VVGVNGVGKTT IG Sbjct: 74 AQDKYVNTDELNGILREEIAALLTENNTVDAESFNIPEGKAPYVIMVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG V L A DTFR+AA++QL IW +R + ++GSD A++A++ A Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVIKQKMGSDPASVAFDTLSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A DV+IIDTAGRLHN LM + K+ V++++ P APH VL VLD +TGQNA Q Sbjct: 194 VANHADVVIIDTAGRLHNKIGLMNELTKIKNVMQKVVPDAPHEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F + +TK+DGTA+GG +I I KIPV ++G+GEG+ DL+ F ++F Sbjct: 254 KQFTLATEVNAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQIFRRREFVDS 313 Query: 310 ITGCLD 315 + G D Sbjct: 314 LFGTTD 319 >gi|53713717|ref|YP_099709.1| recognition particle-docking protein FtsY [Bacteroides fragilis YCH46] gi|60681988|ref|YP_212132.1| putative recognition particle-docking protein [Bacteroides fragilis NCTC 9343] gi|253565665|ref|ZP_04843120.1| recognition particle-docking protein FtsY [Bacteroides sp. 3_2_5] gi|265764041|ref|ZP_06092609.1| signal recognition particle-docking protein FtsY [Bacteroides sp. 2_1_16] gi|52216582|dbj|BAD49175.1| recognition particle-docking protein FtsY [Bacteroides fragilis YCH46] gi|60493422|emb|CAH08208.1| putative recognition particle-docking protein [Bacteroides fragilis NCTC 9343] gi|251945944|gb|EES86351.1| recognition particle-docking protein FtsY [Bacteroides sp. 3_2_5] gi|263256649|gb|EEZ27995.1| signal recognition particle-docking protein FtsY [Bacteroides sp. 2_1_16] Length = 319 Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 124/297 (41%), Positives = 181/297 (60%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG + T + I ++ + ++DD V + LE++LI SD+GV I++ + KR Sbjct: 15 LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRA 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVNGVGKTTVIG 129 A+D V+ Q + + E I +L + DF +P+VI+VVGVNGVGKTT IG Sbjct: 74 AEDKYVNTQELNSILREEIAALLTENNSDDVADFDVPVEKKPYVIMVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG V L A DTFR+AA++QL IW +R + ++G+D A++A++ A Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVDVPVIKQKMGADPASVAFDTLSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A DV+IIDTAGRLHN LM + K+ V+K++ P AP+ VL VLD +TGQNA Q Sbjct: 194 VANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F T + +TK+DGTA+GG +I I KIPV ++G+GEG+ DL+ F K+F Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKKEF 310 >gi|237742006|ref|ZP_04572487.1| signal recognition particle receptor FtsY [Fusobacterium sp. 4_1_13] gi|229429654|gb|EEO39866.1| signal recognition particle receptor FtsY [Fusobacterium sp. 4_1_13] Length = 344 Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 134/316 (42%), Positives = 195/316 (61%), Gaps = 24/316 (7%) Query: 3 NQKVA-SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 NQKV S+ L+ K +GF S KLK T S ++DD + EELEDLL++SD+G+ Sbjct: 43 NQKVNISQRLT---KSKEGFFS---KLKNIFT---SKSKVDDSIYEELEDLLLQSDVGLT 93 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF--NWDF-----SHRPHVI 114 + ++ +L K+V +V D +E ++++L L F + D +++ +VI Sbjct: 94 MTTNLINQL-----EKEVKANKV--DNTEKVYEILKRLMSEFLLSQDSKIYLKNNKINVI 146 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 L+VGVNGVGKTT IGKL+ K + G KV+L AGDTFR+AA++QL+ WA R D V Sbjct: 147 LIVGVNGVGKTTTIGKLALKYKNLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGRE 206 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 G+D A++ Y+ +A++ K DV+IIDTAGRLHN + LM + K+ ++K+ + L Sbjct: 207 GADPASVVYDTLSKAESTKADVVIIDTAGRLHNKTNLMRELEKINNIIKKKIGEQEYESL 266 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+D TTGQN L Q + F++V TG I+TK+DGTA+GG + + K P+ F+G+GE Sbjct: 267 LVIDGTTGQNGLNQAKEFNSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEK 326 Query: 295 INDLEPFVAKDFSAVI 310 I DL F AKDF I Sbjct: 327 IGDLIEFNAKDFVEAI 342 >gi|148284178|ref|YP_001248268.1| cell division ABC transporter, periplasmic substrate-binding protein [Orientia tsutsugamushi str. Boryong] gi|146739617|emb|CAM79402.1| cell division ABC transporter, periplasmic substrate-binding protein [Orientia tsutsugamushi str. Boryong] Length = 312 Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 114/305 (37%), Positives = 183/305 (60%), Gaps = 7/305 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW+ KLT + T+ KL IT + S + + E+LE++L+ +D GV I+E Sbjct: 3 SWLNKLTAAVSKTTNKLTVQITKLFSEKTITKESIEQLEEVLLSADFGVTATNNIIENFK 62 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVI 128 T ++ K++ + + ++++ I K P P + +P +V+++ G+NG GKTT I Sbjct: 63 TIKFNKNIQLDDIKSELAKSIIKFAFPNGNP---ELHIKPDVLNVMIICGINGNGKTTTI 119 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKLS + G K+ +AA DTFR+AA +QL++WA+R+ + G+D A++AY+A Sbjct: 120 GKLSHYYNLQGQKIAIAACDTFRAAATEQLEVWANRSGSYLFKGNPGADPASVAYQAVSW 179 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A K+++L IDTAGRLHN+ LM + K+ +V+ + + L LDAT GQNA Q Sbjct: 180 AIDNKINILFIDTAGRLHNHKNLMDQLKKIKKVINQYHSSSVCYTLLTLDATNGQNAFTQ 239 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF-S 307 VE F + G+I+TK+D T++ G + I KIP+YF+G+GE I+D++ F A DF + Sbjct: 240 VEQFQDIVLLDGVIITKLDSTSKAGVAVGIAEKFKIPIYFIGIGEQIDDIKEFNASDFVN 299 Query: 308 AVITG 312 A++ G Sbjct: 300 AILAG 304 >gi|115373711|ref|ZP_01461005.1| cell division protein FtsY [Stigmatella aurantiaca DW4/3-1] gi|310823616|ref|YP_003955974.1| cell division transporter substrate-binding protein FtsY [Stigmatella aurantiaca DW4/3-1] gi|115369258|gb|EAU68199.1| cell division protein FtsY [Stigmatella aurantiaca DW4/3-1] gi|309396688|gb|ADO74147.1| Cell division transporter substrate-binding protein FtsY [Stigmatella aurantiaca DW4/3-1] Length = 527 Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 118/272 (43%), Positives = 174/272 (63%), Gaps = 4/272 (1%) Query: 37 SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKM 95 +R++D+ V ELE++L +DIGV A +V+ K ++S +R+ + E + ++ Sbjct: 252 QNRQVDESVLAELEEILFTADIGVRTASNLVDLAREKLKRNELSNPERIKALIREEVARI 311 Query: 96 L-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 + +P+ P + + PHV++VVGVNG GKTT IGKL+ +++ G KV+LAAGDTFR+AA Sbjct: 312 VDLPV--PRSLEGGGPPHVVMVVGVNGAGKTTTIGKLAAQLTGQGKKVVLAAGDTFRAAA 369 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 +QL +WA+R A+ V E D A+ + A K+AQ V+I DTAGRLH + LM Sbjct: 370 TEQLDVWAERAQAELVKGEENGDPGAVVFNAVKRAQEIGAHVVIADTAGRLHTKAPLMEE 429 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + K+ RVL + APH VL VLD+T GQNA++Q + FH G + +TK+DGTA+GG Sbjct: 430 LKKVKRVLGKALEGAPHEVLLVLDSTNGQNAIQQAKQFHEAVGINAIALTKLDGTAKGGV 489 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +I I K+PV ++GVGE I+DL F +DF Sbjct: 490 IIGICDELKLPVVWVGVGEKISDLRRFEPRDF 521 >gi|237736962|ref|ZP_04567443.1| cell division protein ftsY [Fusobacterium mortiferum ATCC 9817] gi|229420824|gb|EEO35871.1| cell division protein ftsY [Fusobacterium mortiferum ATCC 9817] Length = 395 Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 131/310 (42%), Positives = 191/310 (61%), Gaps = 11/310 (3%) Query: 11 LSWIRKLTKGF-ASTSLKL---KEGI-----TDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +++ KGF AS KL +EG+ + I+ +DD + EELED+LI+SDIG+ Sbjct: 85 IKEVKEEKKGFFASLKDKLFKSREGLFGTLKSFILGRSVIDDEMYEELEDILIQSDIGMD 144 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + KIV+EL + + V + +Y V E++ L+ + + + + +VILVVGVN Sbjct: 145 MTVKIVKELEKEVKRRGVKDPKEVYPVLREVMEGFLIKENNEIHIE-DGKLNVILVVGVN 203 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT IGKL+ K G KV+L AGDTFR+AAI+QL+ WA+R A+ V S GSD A Sbjct: 204 GVGKTTTIGKLASKYVKEGKKVILGAGDTFRAAAIEQLEEWANRAGAEIVKSTQGSDPGA 263 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++ AQ++ D+ IIDTAGRLHN + LM + K+ ++K+ + + V+D T Sbjct: 264 VVFDTLVAAQSRGADIAIIDTAGRLHNKNNLMKELEKIHNIIKKKLGEQKYESILVIDGT 323 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNAL Q ++F+ V TG I+TK+DGTA+GG + I K P+ F+GVGE I DL Sbjct: 324 TGQNALNQAKVFNEVTELTGFIITKLDGTAKGGIVFSISEEIKKPIKFIGVGEKIEDLRE 383 Query: 301 FVAKDFSAVI 310 F A ++ I Sbjct: 384 FNANEYIQAI 393 >gi|299068055|emb|CBJ39269.1| Signal recognition particle (SRP) GTPase [Ralstonia solanacearum CMR15] Length = 328 Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 127/304 (41%), Positives = 180/304 (59%), Gaps = 13/304 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71 W+ +L G + TS + +T + ++D+ + EELE L+ +D GV + ++ EL Sbjct: 34 WMSRLRSGLSKTS----KSLTTLFVGVKVDEALFEELETALLMADAGVDATEYLLNELRR 89 Query: 72 ---TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 T+R V+ L D L+ ++L PL K +P VI++ GVNG GKTT I Sbjct: 90 RVKTQRIETAEGVKTALRD---LLIELLHPLEKTMVLG-RDQPTVIMIAGVNGAGKTTSI 145 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL K G V+LAAGDTFR+AA +QL IW R + V E G D AA+ ++A Sbjct: 146 GKLCKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQESG-DPAAVIFDAVNA 204 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +D+++ DTAGRL LM + K+ RV+ + APH L V+DA TGQNAL Q Sbjct: 205 ARARGIDIVMADTAGRLPTQLHLMEELKKVRRVIGKAMATAPHETLLVIDANTGQNALAQ 264 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 V+ F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF A++F+ Sbjct: 265 VKAFDDTLGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFAD 324 Query: 309 VITG 312 + G Sbjct: 325 ALLG 328 >gi|332976625|gb|EGK13466.1| cell division protein FtsY [Desmospora sp. 8437] Length = 331 Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 128/307 (41%), Positives = 192/307 (62%), Gaps = 6/307 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + V+ + S +K G + TS L + + S R+D+ + EELE++LI +D+GV Sbjct: 9 ESVSRTTDSVTQKFRSGLSKTSASLVGAMDSVFSRNRIDEELYEELEEVLIGADVGVNTT 68 Query: 64 QKIVEELLTK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-HVILVVGV 119 +IVE+L T+ R KD + L +SE++ +L + + +IL+VGV Sbjct: 69 LEIVEKLRTEVKERKLKDPGELKSL--LSEILVGILQGDGEDEGMNLKEDGLSIILIVGV 126 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+ + G KV+LAAGDTFR+ AI+QL+IW +R D + + GSD A Sbjct: 127 NGVGKTTTIGKLAHHYKEQGRKVVLAAGDTFRAGAIEQLEIWGERVGVDVIRHQAGSDPA 186 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ Y+ + A+A+ D+L+ DTAGRL N LM + K+ RV+ R P APH L VLD+ Sbjct: 187 AVIYDGIQAAKARGADILLCDTAGRLQNKVNLMEELKKVHRVISREVPEAPHETLLVLDS 246 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNA++Q ++FH TG+++TKMDGTA+GG + I ++PV ++G+GE ++DL+ Sbjct: 247 TTGQNAMQQAKIFHEATRITGIVLTKMDGTAKGGIALAIRQELRVPVKWVGLGEQMDDLQ 306 Query: 300 PFVAKDF 306 PF + F Sbjct: 307 PFDGEQF 313 >gi|253573489|ref|ZP_04850832.1| signal recognition particle-docking protein FtsY [Paenibacillus sp. oral taxon 786 str. D14] gi|251847017|gb|EES75022.1| signal recognition particle-docking protein FtsY [Paenibacillus sp. oral taxon 786 str. D14] Length = 335 Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 128/311 (41%), Positives = 193/311 (62%), Gaps = 14/311 (4%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62 + +AS++ S ++ G + E +T++++ R+ +D+ EELE++LI +D+GV Sbjct: 9 ESIASKTESVTKQFRDGLEKSRKGFVEKVTELVTRRKKIDEEFFEELEEILIGADVGVNT 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115 K++++L + QR + + SEL + L++ D H VIL Sbjct: 69 VMKLIDDLRAEVK------QRRIENASELQPLLSEKLTQLLRGDEDSEMHLNPDGISVIL 122 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGKL+ G KV+LAAGDTFR+ AI+QL++W +R D + + G Sbjct: 123 FVGVNGVGKTTTIGKLAHFYKQQGKKVILAAGDTFRAGAIEQLEVWGNRVGVDVIKQQAG 182 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ ++A + A+ + D+L+ DTAGRL N S LM + K+ RV++R P APH VL Sbjct: 183 SDPAAVMFDAVQAAKQRGADILLCDTAGRLQNKSNLMEELNKIYRVIQREIPGAPHEVLM 242 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 VLDATTGQNAL Q ++F +G TGL++TK+DGTA+GG +I I +PV F+G+GE + Sbjct: 243 VLDATTGQNALSQAKLFGEKSGVTGLVLTKLDGTAKGGIVIAIRQELSLPVKFVGLGEKM 302 Query: 296 NDLEPFVAKDF 306 DL+ F ++ F Sbjct: 303 EDLQKFDSEQF 313 >gi|148263169|ref|YP_001229875.1| signal recognition particle-docking protein FtsY [Geobacter uraniireducens Rf4] gi|146396669|gb|ABQ25302.1| signal recognition particle-docking protein FtsY [Geobacter uraniireducens Rf4] Length = 340 Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 126/305 (41%), Positives = 192/305 (62%), Gaps = 13/305 (4%) Query: 13 WIRKLTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV---E 68 + +L +G + T + I T ++ +++D EELE++LI +D+GV +++ E Sbjct: 41 FFERLKRGLSKTHESIVGRIDTLLLGKKQIDADTLEELEEILITADMGVKTTVELIRTLE 100 Query: 69 ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 + L + +D ++++ L D I L + + + + P+VILV+GVNGVGKTT Sbjct: 101 QRLKRNELQDGEALKKALKDE---ITARLSQHTTALDVNAAS-PYVILVIGVNGVGKTTT 156 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ K G KV+LAAGDTFR+AA +QL++W +R AD V + GSD +A+ ++A K Sbjct: 157 IGKLAAKFRSEGKKVLLAAGDTFRAAAAEQLEVWGNRVGADVVRHKEGSDPSAVVFDACK 216 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A A+ D+L+IDTAGRLH LM + K+ RVL+R P APH + +LDA TGQNA+ Sbjct: 217 AALARNSDILLIDTAGRLHTKVNLMEEMKKIRRVLEREIPGAPHETMLILDAATGQNAIS 276 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK--IPVYFLGVGEGINDLEPFVAKD 305 Q ++F A +G+++TK+DGTA+GG I + V+H+ IPV ++GVGEG++DL F Sbjct: 277 QAKLFKEAAQVSGVVLTKLDGTAKGG--IVVAVSHEFAIPVRYIGVGEGVDDLREFDPLQ 334 Query: 306 FSAVI 310 F I Sbjct: 335 FVEAI 339 >gi|167763124|ref|ZP_02435251.1| hypothetical protein BACSTE_01493 [Bacteroides stercoris ATCC 43183] gi|167699464|gb|EDS16043.1| hypothetical protein BACSTE_01493 [Bacteroides stercoris ATCC 43183] Length = 319 Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 122/296 (41%), Positives = 179/296 (60%), Gaps = 6/296 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-- 73 L KG + T + I I+ + ++DD V + LE++LI SD+GV KI+E + + Sbjct: 15 LDKGLSKTKESVFGKIARAIAGKSKVDDEVLDNLEEVLITSDVGVETTLKIIERIEKRAA 74 Query: 74 --RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +Y + +L D ++ L+ + F + +P+VI+VVGVNGVGKTT IGK Sbjct: 75 DEKYMNAKELNVILRDEIAALLTENNSDDVDDFETPVTKKPYVIMVVGVNGVGKTTTIGK 134 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + AG V L A DTFR+AA++QL IW +R + ++G+D A++A++ A Sbjct: 135 LAYQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVGVPVIKQKMGADPASVAFDTLSSAV 194 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A DV+IIDTAGRLHN LM + K+ V+K++ P AP+ VL VLD +TGQNA Q + Sbjct: 195 ANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGSTGQNAFEQAK 254 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F T + +TK+DGTA+GG +I I KIPV ++G+GEGI DL+ F K+F Sbjct: 255 QFTLATEVTAMAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGIEDLQVFRKKEF 310 >gi|256845346|ref|ZP_05550804.1| signal recognition particle-docking protein FtsY [Fusobacterium sp. 3_1_36A2] gi|256718905|gb|EEU32460.1| signal recognition particle-docking protein FtsY [Fusobacterium sp. 3_1_36A2] Length = 344 Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 134/316 (42%), Positives = 195/316 (61%), Gaps = 24/316 (7%) Query: 3 NQKVA-SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 NQKV S+ L+ K +GF S KLK T S ++DD + EELEDLL++SD+G+ Sbjct: 43 NQKVNISQRLT---KSKEGFFS---KLKNIFT---SKSKVDDSIYEELEDLLLQSDVGLT 93 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF--NWDF-----SHRPHVI 114 + ++ +L K+V +V D +E ++++L L F + D +++ +VI Sbjct: 94 MTTNLINQL-----EKEVKANKV--DNTEKVYEILKRLMSEFLLSQDSKIYLKNNKINVI 146 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 L+VGVNGVGKTT IGKL+ K + G KV+L AGDTFR+AA++QL+ WA R D V Sbjct: 147 LIVGVNGVGKTTTIGKLALKYKNLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGRE 206 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 G+D A++ Y+ +A++ K DV+IIDTAGRLHN + LM + K+ ++K+ + L Sbjct: 207 GADPASVVYDTLSRAESTKADVVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESL 266 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+D TTGQN L Q + F++V TG I+TK+DGTA+GG + + K P+ F+G+GE Sbjct: 267 LVIDGTTGQNGLNQAKEFNSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEK 326 Query: 295 INDLEPFVAKDFSAVI 310 I DL F AKDF I Sbjct: 327 IGDLIEFNAKDFVEAI 342 >gi|237716498|ref|ZP_04546979.1| recognition particle-docking protein FtsY [Bacteroides sp. D1] gi|262408096|ref|ZP_06084644.1| signal recognition particle-docking protein FtsY [Bacteroides sp. 2_1_22] gi|294809490|ref|ZP_06768193.1| signal recognition particle-docking protein FtsY [Bacteroides xylanisolvens SD CC 1b] gi|229444145|gb|EEO49936.1| recognition particle-docking protein FtsY [Bacteroides sp. D1] gi|262354904|gb|EEZ03996.1| signal recognition particle-docking protein FtsY [Bacteroides sp. 2_1_22] gi|294443308|gb|EFG12072.1| signal recognition particle-docking protein FtsY [Bacteroides xylanisolvens SD CC 1b] Length = 319 Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 123/297 (41%), Positives = 180/297 (60%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG + T + I ++ + ++DD V + LE++LI SD+GV I++ + KR Sbjct: 15 LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRA 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVIG 129 A D V+ Q + + + I +L + F+ + +P+VI+VVGVNGVGKTT IG Sbjct: 74 AADKYVNTQELNLILRDEIAALLTENNSNDVADFDVPITRKPYVIMVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG V L A DTFR+AA++QL IW +R V ++G+D A++AY+ A Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGADPASVAYDTLSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A DV+IIDTAGRLHN LM + K+ V+K++ P+AP VL VLD +TGQNA Q Sbjct: 194 VANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPNAPDEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F T + +TK+DGTA+GG +I I KIPV ++G+GEG+ DL+ F +F Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKNEF 310 >gi|464390|sp|P14929|FTSY_NEIGO RecName: Full=Cell division protein ftsY homolog Length = 416 Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 117/297 (39%), Positives = 182/297 (61%), Gaps = 3/297 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G A + K+ + + + ++ + + EELE +LI D+G+ + +++++ Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 176 RGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W R + V S+ D+AA+ ++A + A Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVT-VISQTTGDSAAVCFDAVQAA 294 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV Sbjct: 295 KAR-IDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQV 353 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F Sbjct: 354 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 410 >gi|257066451|ref|YP_003152707.1| signal recognition particle-docking protein FtsY [Anaerococcus prevotii DSM 20548] gi|256798331|gb|ACV28986.1| signal recognition particle-docking protein FtsY [Anaerococcus prevotii DSM 20548] Length = 400 Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 130/303 (42%), Positives = 192/303 (63%), Gaps = 3/303 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65 A E + + K+ KG + T + +G+T++ + ++DD + EELE++LI +DIG+ + Sbjct: 93 ADEGIGFFAKIKKGLSKTRDQFSQGLTNLFTRNVKIDDDLYEELEEILISADIGMKSTLE 152 Query: 66 IVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVG 123 IV+EL + + + +Y V E++ K L + N + + + VILV+GVNGVG Sbjct: 153 IVDELRDEIKKRSIKEADQIYPVLQEIMIKKLDEKNLDNNLNIADKNLSVILVIGVNGVG 212 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+ + G VMLAA DTFR+AAI+QL WA+++ + + + GSD +A+ + Sbjct: 213 KTTTIGKLANNLKKEGKNVMLAAADTFRAAAIEQLGEWAEKSDIEMISHKEGSDPSAVIF 272 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A K A+AK DVLI DTAGRLHN LM + K+ + + A L VLDATTGQ Sbjct: 273 DAIKSAKAKNSDVLICDTAGRLHNKKNLMKELEKINKTIDTHAKGASRDNLLVLDATTGQ 332 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NA+ Q+ F V +GLI+TK+DGTA+GG + P+ V ++PV ++GVGEGINDLE F + Sbjct: 333 NAVSQLREFKNVTDISGLILTKLDGTAKGGVIFPLQVELEVPVKYIGVGEGINDLEKFDS 392 Query: 304 KDF 306 K F Sbjct: 393 KTF 395 >gi|261408031|ref|YP_003244272.1| signal recognition particle-docking protein FtsY [Paenibacillus sp. Y412MC10] gi|261284494|gb|ACX66465.1| signal recognition particle-docking protein FtsY [Paenibacillus sp. Y412MC10] Length = 333 Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 127/324 (39%), Positives = 200/324 (61%), Gaps = 14/324 (4%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAV 62 + ++S++ + ++ G T E ++D +I +++D+ EELE++LI +D+GV Sbjct: 9 ESISSKTENVTKQFRDGLEKTRKGFIEKVSDLVIRRKKIDEEFYEELEEILIGADVGVNT 68 Query: 63 AQKIVEEL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPH---VIL 115 ++++L + KR +D + D+ ++ + LM L + + + P VIL Sbjct: 69 VMDLMDDLRAEVKKRRIEDAA------DLQPVLSEKLMGLLRDDSSNELRENPDGITVIL 122 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGKL+ + G KV+LAAGDTFR+ AI+QL++W +R + + + G Sbjct: 123 FVGVNGVGKTTTIGKLAHRYKQEGKKVLLAAGDTFRAGAIEQLEVWGERVGVEVIKQQPG 182 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ ++A + A+ ++ DVL+ DTAGRL N + LM + K+ RV++R P APH VL Sbjct: 183 SDPAAVMFDAVQAAKQRQADVLLCDTAGRLQNKTNLMEELNKIFRVIQREIPSAPHEVLM 242 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 VLDATTGQNAL Q ++F +G TGL++TK+DGTA+GG +I I +PV +G+GE + Sbjct: 243 VLDATTGQNALSQAKLFGEKSGVTGLVLTKLDGTAKGGIVIAIRQELNLPVKLVGLGEKM 302 Query: 296 NDLEPFVAKDFSAVITGCLDYGEE 319 DL+ F ++ F + L EE Sbjct: 303 GDLQTFDSEQFVHALFAGLIKEEE 326 >gi|294785356|ref|ZP_06750644.1| signal recognition particle-docking protein FtsY [Fusobacterium sp. 3_1_27] gi|294487070|gb|EFG34432.1| signal recognition particle-docking protein FtsY [Fusobacterium sp. 3_1_27] Length = 344 Score = 216 bits (549), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 133/311 (42%), Positives = 193/311 (62%), Gaps = 14/311 (4%) Query: 3 NQKVA-SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 NQKV S+ L+ K +GF S KLK T S ++DD + EELEDLL++SD+G+ Sbjct: 43 NQKVNISQRLT---KSKEGFFS---KLKNIFT---SKSKVDDSIYEELEDLLLQSDVGLN 93 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL-SKPFNWDFSHRPHVILVVGV 119 + ++ +L + +K V +Y++ L+ + L+ SK + D ++ +VIL+VGV Sbjct: 94 MTTNLINQLEKEVKSKKVDNTNEVYEILKRLMSEFLLSQDSKIYLED--NKINVILIVGV 151 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+ K + G KV+L AGDTFR+AA++QL+ WA R D V G+D A Sbjct: 152 NGVGKTTTIGKLALKYKNLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGREGADPA 211 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ Y+ +A+ K DV+IIDTAGRLHN + LM + K+ ++K+ + L V+D Sbjct: 212 SVVYDTLSRAEITKADVVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESLLVIDG 271 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQN L Q + F++V TG I+TK+DGTA+GG + + K P+ F+G+GE I DL Sbjct: 272 TTGQNGLNQAKEFNSVTALTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIGDLI 331 Query: 300 PFVAKDFSAVI 310 F AKDF I Sbjct: 332 EFNAKDFVEAI 342 >gi|325285394|ref|YP_004261184.1| signal recognition particle-docking protein FtsY [Cellulophaga lytica DSM 7489] gi|324320848|gb|ADY28313.1| signal recognition particle-docking protein FtsY [Cellulophaga lytica DSM 7489] Length = 320 Score = 216 bits (549), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 118/273 (43%), Positives = 171/273 (62%), Gaps = 7/273 (2%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLM 97 ++DD V + LE++L+ SD+GV KI++ + R +KD + + + E I +L Sbjct: 40 KVDDDVLDNLEEILVTSDVGVDTTLKIIDRI-EARVSKDKYLGTDELNVILREEIAALLS 98 Query: 98 PLSKPFNWDF----SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 + +F +P+VI+VVGVNGVGKTT IGK++ + GLKV+L A DTFR+A Sbjct: 99 ETNTGNETEFVVPKGVKPYVIMVVGVNGVGKTTTIGKMAYQFKKQGLKVVLGAADTFRAA 158 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 AIDQL++WADR V ++GSD A++A++ A + DV+IIDTAGRLHN LM Sbjct: 159 AIDQLQVWADRVDIPIVKQKMGSDPASVAFDTLSSAVTQNADVVIIDTAGRLHNKVNLMN 218 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + K+ RV+ ++ + PH V+ VLD +TGQNA Q + F T L +TK+DGTA+GG Sbjct: 219 ELTKVKRVMHKVVDNTPHDVMLVLDGSTGQNAFEQAKQFTKATEVTSLAVTKLDGTAKGG 278 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +I I +IPV ++GVGEGI DL+ F +F Sbjct: 279 VVIGISDQFQIPVKYIGVGEGIEDLQVFNKYEF 311 >gi|189465616|ref|ZP_03014401.1| hypothetical protein BACINT_01974 [Bacteroides intestinalis DSM 17393] gi|189437890|gb|EDV06875.1| hypothetical protein BACINT_01974 [Bacteroides intestinalis DSM 17393] Length = 319 Score = 216 bits (549), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 121/296 (40%), Positives = 179/296 (60%), Gaps = 6/296 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVA----VAQKIVEELL 71 L KG + T + I ++ + ++DD V + LE++LI SD+GV + Q+I + Sbjct: 15 LDKGLSKTKESVFGKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIQRIEKRAA 74 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +++Y + +L D ++ L+ + F + +P+VI+VVGVNGVGKTT IGK Sbjct: 75 SEKYMNAQELNTILRDEIAALLTENNSDDVDDFEAPIAKKPYVIMVVGVNGVGKTTTIGK 134 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + AG V L A DTFR+AA++QL IW R V ++G+D A++AY+ A Sbjct: 135 LAYQFKKAGKSVYLGAADTFRAAAVEQLDIWGGRVGVPVVKQKMGADPASVAYDTLSSAV 194 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A DV+IIDTAGRLHN LM + K+ V+K++ P AP+ VL VLD +TGQNA Q + Sbjct: 195 ANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGSTGQNAFEQAK 254 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F T + +TK+DGTA+GG +I I KIPV ++G+GEG+ DL+ F K+F Sbjct: 255 QFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKKEF 310 >gi|189183987|ref|YP_001937772.1| signal recognition particle receptor FtsY [Orientia tsutsugamushi str. Ikeda] gi|189180758|dbj|BAG40538.1| signal recognition particle receptor FtsY [Orientia tsutsugamushi str. Ikeda] Length = 315 Score = 216 bits (549), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 116/305 (38%), Positives = 183/305 (60%), Gaps = 7/305 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW+ KLT + T+ KL IT + S + + E+LE++L+ +D GV I+E Sbjct: 6 SWLNKLTAAVSKTTNKLTVQITKLFSEKTITKESIEQLEEVLLSADFGVTATNNIIENFK 65 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVI 128 T ++ K++ + + ++++ I K P P + +P +V+++ G+NG GKTT I Sbjct: 66 TIKFNKNIQLDDIKSELAKSIIKFAFPNGNP---ELHIKPGVLNVMIICGINGNGKTTTI 122 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKLS + G KV +AA DTFR+AA +QL+IWA+R+ + G+D A++AY+A Sbjct: 123 GKLSHYYNLQGQKVAIAACDTFRAAATEQLEIWANRSGSYLFKGNPGADPASVAYQAAGW 182 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A K+++L IDTAGRLHN+ LM + K+ +V+ + + L LDAT GQNA Q Sbjct: 183 AIDNKMNILFIDTAGRLHNHKNLMDQLKKIKKVINQYHSSSVCYTLLTLDATNGQNAFTQ 242 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF-S 307 VE F + G+I+TK+D T++ G + I KIP+YF+G+GE I+D++ F A DF + Sbjct: 243 VEQFQDIVLLDGVIITKLDSTSKAGVAVGIAEKFKIPIYFIGIGEQIDDIKEFNASDFVN 302 Query: 308 AVITG 312 A++ G Sbjct: 303 AILAG 307 >gi|260663571|ref|ZP_05864461.1| signal recognition particle receptor [Lactobacillus fermentum 28-3-CHN] gi|260552112|gb|EEX25165.1| signal recognition particle receptor [Lactobacillus fermentum 28-3-CHN] Length = 509 Score = 216 bits (549), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 118/279 (42%), Positives = 170/279 (60%), Gaps = 18/279 (6%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK------RYAKDVS---VQRV--LYD 87 R +D+ + LED+LI SD+G +A K+ + L + + +DVS ++++ LYD Sbjct: 226 RHVDEDFFDNLEDMLIESDVGYEMAMKLSDSLREEVRLQNAKNKQDVSNVIIEKMVDLYD 285 Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 + + + ++ P VI+ VGVNG GKTT IGK++ + G +V+LAA Sbjct: 286 EAGAGEQTTLTMA-------DQGPTVIMFVGVNGAGKTTTIGKMAARFKGQGKRVLLAAA 338 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DTFR+ A +QL++WA R D V SD AA+ ++A +A+ DVL +DTAGRL N Sbjct: 339 DTFRAGATEQLEVWAQRDGVDIVTGPENSDPAAVVFDAVTKAKKDNYDVLFVDTAGRLQN 398 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 LM + KM R+L R P APH VL VLDATTGQNAL Q ++F TG+++TK+D Sbjct: 399 KVNLMNELAKMKRILTREIPDAPHEVLLVLDATTGQNALTQAKLFKETTDVTGIVLTKLD 458 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 GTARGG ++ I +PV F+G+GE ++DLE F A+DF Sbjct: 459 GTARGGIVLAIRNELHLPVKFVGLGEKVSDLEEFNAQDF 497 >gi|317476989|ref|ZP_07936231.1| signal recognition particle-docking protein FtsY [Bacteroides eggerthii 1_2_48FAA] gi|316906782|gb|EFV28494.1| signal recognition particle-docking protein FtsY [Bacteroides eggerthii 1_2_48FAA] Length = 319 Score = 216 bits (549), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 121/296 (40%), Positives = 178/296 (60%), Gaps = 6/296 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-- 73 L KG + T + I ++ + ++DD V + LE++LI SD+GV KI+E + + Sbjct: 15 LDKGLSKTKESVFGKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLKIIERIEKRAA 74 Query: 74 --RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +Y + +L D ++ L+ + F + +P+VI+VVGVNGVGKTT IGK Sbjct: 75 DEKYMNAQELNMILRDEIAALLTENNSDDVDDFETPITKKPYVIMVVGVNGVGKTTTIGK 134 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + G V L A DTFR+AA++QL IW +R V ++GSD A++A++ A Sbjct: 135 LAYQFKKTGKSVYLGAADTFRAAAVEQLVIWGERVGVPVVKQKMGSDPASVAFDTLSSAV 194 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A DV+IIDTAGRLHN LM + K+ V+K++ P AP+ VL VLD +TGQNA Q + Sbjct: 195 ANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGSTGQNAFEQAK 254 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F T + +TK+DGTA+GG +I I KIPV ++G+GEG+ DL+ F K+F Sbjct: 255 QFTLATEVTAMAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKKEF 310 >gi|329929610|ref|ZP_08283317.1| signal recognition particle-docking protein FtsY [Paenibacillus sp. HGF5] gi|328936255|gb|EGG32707.1| signal recognition particle-docking protein FtsY [Paenibacillus sp. HGF5] Length = 333 Score = 216 bits (549), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 127/324 (39%), Positives = 200/324 (61%), Gaps = 14/324 (4%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAV 62 + ++S++ + ++ G T E ++D +I +++D+ EELE++LI +D+GV Sbjct: 9 ESISSKTENVTKQFRDGLEKTRKGFIEKVSDLVIRRKKIDEEFYEELEEILIGADVGVNT 68 Query: 63 AQKIVEEL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPH---VIL 115 ++++L + KR +D + D+ ++ + LM L + + + P VIL Sbjct: 69 VMDLMDDLRAEVKKRRIEDAA------DLQPVLSEKLMGLLRDDSSNELRENPDGITVIL 122 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGKL+ + G KV+LAAGDTFR+ AI+QL++W +R + + + G Sbjct: 123 FVGVNGVGKTTTIGKLAHRYKQEGKKVLLAAGDTFRAGAIEQLEVWGERVGVEVIKQQPG 182 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ ++A + A+ ++ DVL+ DTAGRL N + LM + K+ RV++R P APH VL Sbjct: 183 SDPAAVMFDAVQAAKQRQADVLLCDTAGRLQNKTNLMEELNKIFRVIQREIPSAPHEVLM 242 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 VLDATTGQNAL Q ++F +G TGL++TK+DGTA+GG +I I +PV +G+GE + Sbjct: 243 VLDATTGQNALSQAKLFGEKSGVTGLVLTKLDGTAKGGIVIAIRQELNLPVKLVGLGEKM 302 Query: 296 NDLEPFVAKDFSAVITGCLDYGEE 319 DL+ F ++ F + L EE Sbjct: 303 GDLQTFDSEQFVHALFAGLIKEEE 326 >gi|299821775|ref|ZP_07053663.1| cell division protein FtsY [Listeria grayi DSM 20601] gi|299817440|gb|EFI84676.1| cell division protein FtsY [Listeria grayi DSM 20601] Length = 327 Score = 215 bits (548), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 126/310 (40%), Positives = 195/310 (62%), Gaps = 10/310 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K+ ++ S K G + T + +++ R++D+ EELE++LI +D+G Sbjct: 9 EKITGQTDSVTGKFKDGLSKTRQNFSGKLNQMMARYRKVDEEFFEELEEVLIGADVGFDT 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL------SKPFNWDFSHRPHVILV 116 ++V++L + +++S + +V E+I + L+ + +KP R ++IL Sbjct: 69 VMELVDQLREEVKLRNISDPK---EVQEVIVEKLVAIYEGEEEAKPALDIKDGRLNIILF 125 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGK++ + G KVMLAAGDTFR+ AI+QL++W +R + + + GS Sbjct: 126 VGVNGVGKTTTIGKMAHMLQSQGKKVMLAAGDTFRAGAIEQLEVWGERANVEVIKQTAGS 185 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D AA+ Y+A + A+A+ VDVL+ DTAGRL N LM + K+ RV+ R P APH VL V Sbjct: 186 DPAAVMYDALQAAKARGVDVLLCDTAGRLQNKVNLMNELEKVKRVIGREVPDAPHEVLLV 245 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDATTGQNA Q + F +G+++TK+DGTA+GG +I I +IPV ++G+GE I+ Sbjct: 246 LDATTGQNAFVQAKQFKEATDVSGIVLTKLDGTAKGGIVIAIRNGLQIPVKYIGLGEKID 305 Query: 297 DLEPFVAKDF 306 DL+PF A+D+ Sbjct: 306 DLQPFDAEDY 315 >gi|329954831|ref|ZP_08295848.1| signal recognition particle-docking protein FtsY [Bacteroides clarus YIT 12056] gi|328526935|gb|EGF53946.1| signal recognition particle-docking protein FtsY [Bacteroides clarus YIT 12056] Length = 319 Score = 215 bits (548), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 120/296 (40%), Positives = 179/296 (60%), Gaps = 6/296 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-- 73 L KG + T + I ++ + ++DD V + LE++LI SD+GV KI+E + + Sbjct: 15 LDKGLSKTKESVFGKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLKIIERIEKRAA 74 Query: 74 --RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +Y + +L D ++ L+ + F + +P+VI+VVGVNGVGKTT IGK Sbjct: 75 DEKYMNAQELNMILRDEIAALLTENNSDDVDDFETPITKKPYVIMVVGVNGVGKTTTIGK 134 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + AG V L A DTFR+AA++QL IW +R + ++G+D A++A++ A Sbjct: 135 LAYQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVGVPVIKQKMGADPASVAFDTLSSAV 194 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A DV+IIDTAGRLHN LM + K+ V+K++ P AP+ VL VLD +TGQNA Q + Sbjct: 195 ANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGSTGQNAFEQAK 254 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F T + +TK+DGTA+GG +I I KIPV ++G+GEG+ DL+ F K+F Sbjct: 255 QFTLATEVTAMAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKKEF 310 >gi|294645090|ref|ZP_06722816.1| signal recognition particle-docking protein FtsY [Bacteroides ovatus SD CC 2a] gi|292639596|gb|EFF57888.1| signal recognition particle-docking protein FtsY [Bacteroides ovatus SD CC 2a] Length = 349 Score = 215 bits (548), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 123/297 (41%), Positives = 180/297 (60%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG + T + I ++ + ++DD V + LE++LI SD+GV I++ + KR Sbjct: 45 LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRA 103 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVIG 129 A D V+ Q + + + I +L + F+ + +P+VI+VVGVNGVGKTT IG Sbjct: 104 AADKYVNTQELNLILRDEIAALLTENNSNDVADFDVPITRKPYVIMVVGVNGVGKTTTIG 163 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG V L A DTFR+AA++QL IW +R V ++G+D A++AY+ A Sbjct: 164 KLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGADPASVAYDTLSSA 223 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A DV+IIDTAGRLHN LM + K+ V+K++ P+AP VL VLD +TGQNA Q Sbjct: 224 VANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPNAPDEVLLVLDGSTGQNAFEQA 283 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F T + +TK+DGTA+GG +I I KIPV ++G+GEG+ DL+ F +F Sbjct: 284 KQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKNEF 340 >gi|32490820|ref|NP_871074.1| hypothetical protein WGLp071 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166026|dbj|BAC24217.1| ftsY [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 326 Score = 215 bits (548), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 118/274 (43%), Positives = 169/274 (61%), Gaps = 2/274 (0%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELI 92 +I S+++D+ + EE+E L+ SDIGV QKI+ EL K + +Y+ + E I Sbjct: 45 NIFKSKKIDEKLFEEIETHLLTSDIGVKTTQKIINELNFLNKNKKIKNSENMYEHLKEKI 104 Query: 93 HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 ML+ +P P +IL+VGVNGVGKTT I K++KK G KVM+ AGDTFR+ Sbjct: 105 SHMLLNAQEPL-LITEKFPFIILIVGVNGVGKTTTIIKIAKKYKSEGKKVMVVAGDTFRA 163 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AIDQL+I +C SDA+++ + A K A+ DVLIIDTAGRLHN LM Sbjct: 164 GAIDQLEILGKNNKIPVICDYKKSDASSIIFTAIKNAKKNNADVLIIDTAGRLHNKFHLM 223 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + K+++V+K+LDP APH + ++DA TGQN L QVE F+ +G+ +TK+DGT++G Sbjct: 224 EELKKIVKVIKKLDPSAPHESMLIIDANTGQNTLNQVEFFNNAIKISGITLTKLDGTSKG 283 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G +I I IP+ ++G G+ ND+ F + DF Sbjct: 284 GIIIAIADQFNIPIRYIGTGKDNNDIYKFKSYDF 317 >gi|27262314|gb|AAN87438.1| signal recognition particle receptor FtsY [Heliobacillus mobilis] Length = 364 Score = 215 bits (548), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 119/260 (45%), Positives = 170/260 (65%), Gaps = 4/260 (1%) Query: 16 KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +L +G T L + + +++ R ++DD + +ELE+ LI +D+G + ++VE L K Sbjct: 7 RLKEGLTRTRQNLVDKVEALVTGRTKIDDDLYDELEEALISADVGAETSIELVERLRRKV 66 Query: 75 YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 + +S +L + E I +L + P N ++P VIL+VGVNGVGKTT I KL+ Sbjct: 67 KEQKISDPSLLQGLLQEEIAAILGGEAIPVN--LGNQPTVILIVGVNGVGKTTTIAKLAH 124 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 + G KV+LAAGDTFR+AAIDQL+IW R + + + G+D +A+A++A + A++++ Sbjct: 125 RWKQEGRKVLLAAGDTFRAAAIDQLEIWGQRVGVEVIRHQEGADPSAVAFDAVQAAKSRE 184 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 DVLIIDTAGRLHN S LM + K+ RVL R P APH L VLDATTGQNAL Q +F Sbjct: 185 SDVLIIDTAGRLHNKSHLMNELSKINRVLGRAMPGAPHETLLVLDATTGQNALSQARIFG 244 Query: 254 AVAGTTGLIMTKMDGTARGG 273 G TGL++TK+DGTA+GG Sbjct: 245 EAVGLTGLVLTKLDGTAKGG 264 >gi|317495480|ref|ZP_07953848.1| signal recognition particle-docking protein FtsY [Gemella moribillum M424] gi|316914294|gb|EFV35772.1| signal recognition particle-docking protein FtsY [Gemella moribillum M424] Length = 348 Score = 215 bits (548), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 130/297 (43%), Positives = 183/297 (61%), Gaps = 16/297 (5%) Query: 15 RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 K KG + + ++ISS R +++ E+LE+LLI+SD+ ++V+ Sbjct: 39 EKFKKGLKKSRDSFSNALNNLISSYREINEEFFEDLEELLIQSDVSYNTVLELVD----- 93 Query: 74 RYAKDVSVQRVLYDVSEL----IHKML-MPLSKPFNWDFSHRPH----VILVVGVNGVGK 124 Y K+ S +R L + SEL I K++ + + D + P V L VGVNGVGK Sbjct: 94 -YLKEESQRRNLKEPSELQEMIIEKLVDIYMEGTVKADLKYAPEKELSVFLFVGVNGVGK 152 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+ + G KV++AAGDTFR+ AIDQL +WA R+ AD V S G+D+AA+ ++ Sbjct: 153 TTSIGKLAHNLKKEGKKVLIAAGDTFRAGAIDQLDVWAKRSGADIVKSHEGADSAAIIFD 212 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + A+AK DVL+ DTAGRL N LM + K++RV+KR P PH VL +DATTGQN Sbjct: 213 AIQSAKAKGYDVLLCDTAGRLQNKDYLMKELEKIVRVIKREVPEGPHEVLLTIDATTGQN 272 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + Q + F V+ TG+I+TK+DGTA+GG +I I IPV +G+GE I+DLE F Sbjct: 273 GILQAKTFKEVSDVTGVILTKLDGTAKGGIVIAIKKELGIPVKLVGLGENIDDLEVF 329 >gi|255009414|ref|ZP_05281540.1| putative recognition particle-docking protein [Bacteroides fragilis 3_1_12] gi|313147173|ref|ZP_07809366.1| recognition particle-docking protein FtsY [Bacteroides fragilis 3_1_12] gi|313135940|gb|EFR53300.1| recognition particle-docking protein FtsY [Bacteroides fragilis 3_1_12] Length = 319 Score = 215 bits (548), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 124/297 (41%), Positives = 180/297 (60%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG + T + I ++ + ++DD V + LE++LI SD+GV I++ + KR Sbjct: 15 LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRA 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVNGVGKTTVIG 129 A+D V+ Q + + E I +L + DF +P+VI+VVGVNGVGKTT IG Sbjct: 74 AEDKYVNTQELNSILREEIAALLTENNSDDVADFDVPVEKKPYVIMVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + A V L A DTFR+AA++QL IW DR + ++G+D A++A++ A Sbjct: 134 KLAYQFKKASKSVYLGAADTFRAAAVEQLVIWGDRVGVPVIKQKMGADPASVAFDTLSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A DV+IIDTAGRLHN LM + K+ V+K++ P AP+ VL VLD +TGQNA Q Sbjct: 194 VANDADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F T + +TK+DGTA+GG +I I KIPV ++G+GEG+ DL+ F K+F Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKKEF 310 >gi|239826587|ref|YP_002949211.1| signal recognition particle-docking protein FtsY [Geobacillus sp. WCH70] gi|239806880|gb|ACS23945.1| signal recognition particle-docking protein FtsY [Geobacillus sp. WCH70] Length = 329 Score = 215 bits (547), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 131/308 (42%), Positives = 191/308 (62%), Gaps = 16/308 (5%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K+ ++ S K +G + T + D+I+ R++D+ EELE++LI +D+GV Sbjct: 9 EKITKQADSVTEKFKQGLSKTRDSFAGRVNDLIARYRKVDEEFFEELEEILISADVGVNT 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH---------V 113 ++V+EL K K +R + D E+ + L + + D + V Sbjct: 69 VMELVDEL--KMEVK----RRNIQDPKEMKAVISEKLVEIYRGDDDAKAELNIQENGLTV 122 Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 IL VGVNGVGKTT IGKL+ K+ G VMLAAGDTFR+ AI+QL++W +R A+ + Sbjct: 123 ILFVGVNGVGKTTTIGKLAHKLKSEGKTVMLAAGDTFRAGAIEQLEVWGERVGAEVIKQS 182 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 GSD AA+ Y+A + A+A+ VDVL+ DTAGRL N LM + K+ RV++R P APH V Sbjct: 183 AGSDPAAVIYDAIQAAKARHVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREIPGAPHEV 242 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L VLDATTGQNA+ Q ++F V TG+++TK+DGTA+GG ++ I IPV F+G+GE Sbjct: 243 LLVLDATTGQNAMSQAKIFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKFVGLGE 302 Query: 294 GINDLEPF 301 ++DL+PF Sbjct: 303 KMDDLQPF 310 >gi|222151068|ref|YP_002560222.1| signal recognition particle GTPase FtsY [Macrococcus caseolyticus JCSC5402] gi|222120191|dbj|BAH17526.1| signal recognition particle GTPase FtsY [Macrococcus caseolyticus JCSC5402] Length = 416 Score = 215 bits (547), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 119/298 (39%), Positives = 181/298 (60%), Gaps = 10/298 (3%) Query: 16 KLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K +G + + + D+++ R +D+ E LE++LI++D+G +VE L + Sbjct: 92 KFREGLEKSRENFQNKLNDLLAMYRTVDEDFFEALEEMLIQADVGFNTVMDLVESLRMEA 151 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP------HVILVVGVNGVGKTTVI 128 ++++ D+ E+I + ++ + + + VIL+VGVNGVGKTT I Sbjct: 152 KRRNITE---TADLREVIVEKIVEIYEQEDDKLQEMNIQEDGLTVILMVGVNGVGKTTTI 208 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ + G KVMLAAGDTFR+ AI+QL++W DR + + GSD AA+ Y+A Sbjct: 209 GKLAHRYKGQGKKVMLAAGDTFRAGAIEQLQVWGDRVGVEVIKQSEGSDPAAVMYDAIGA 268 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ + D+LI DTAGRL N + LM + K+ +VL R P APH VL LDATTGQNAL Q Sbjct: 269 AKNRGADILICDTAGRLQNKANLMTELEKVKKVLSRAVPGAPHEVLLALDATTGQNALVQ 328 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F V +G+++TK+DGTA+GG ++ I IPV F+G+GE ++DL+PF A+ + Sbjct: 329 AKAFKEVTDVSGIVLTKLDGTAKGGIVLAIRNELHIPVKFVGLGEKLDDLQPFDAESY 386 >gi|254303084|ref|ZP_04970442.1| cell division protein FtsY [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323276|gb|EDK88526.1| cell division protein FtsY [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 344 Score = 215 bits (547), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 127/298 (42%), Positives = 185/298 (62%), Gaps = 7/298 (2%) Query: 15 RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 ++LTK KLK T S ++DD + EELEDLL++SD+G+++ ++ +L + Sbjct: 50 QRLTKSKEGFFSKLKNIFT---SKSKVDDSIYEELEDLLLQSDVGLSMTTNLINQLEKEV 106 Query: 75 YAKDVSVQRVLYDV-SELIHKMLMPL-SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 A V +Y++ L+ + L+ SK + D ++ +VIL+VGVNGVGKTT IGKL+ Sbjct: 107 KANKVDNTDEVYEILKRLMSEFLLSQDSKIYLKD--NKINVILIVGVNGVGKTTTIGKLA 164 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 K G KV+L AGDTFR+AA++QL+ WA R D V G+D A++ Y+ +A+A Sbjct: 165 LKYKKLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGREGADPASVVYDTLSRAEAT 224 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 K DV+IIDTAGRLHN + LM + K+ ++K+ + L V+D TTGQN L Q + F Sbjct: 225 KADVVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESLLVIDGTTGQNGLNQAKEF 284 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 ++V TG I+TK+DGTA+GG + + K P+ F+G+GE I DL F AKDF I Sbjct: 285 NSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIGDLIEFNAKDFVEAI 342 >gi|260494667|ref|ZP_05814797.1| signal recognition particle-docking protein FtsY [Fusobacterium sp. 3_1_33] gi|260197829|gb|EEW95346.1| signal recognition particle-docking protein FtsY [Fusobacterium sp. 3_1_33] Length = 328 Score = 215 bits (547), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 129/315 (40%), Positives = 195/315 (61%), Gaps = 13/315 (4%) Query: 1 MSNQKVASESLSWIRKLTK---GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSD 57 + +K ++ ++ ++LTK GF S KLK T S ++DD + EELEDLL++SD Sbjct: 20 IDKEKEENQKVNISQRLTKSKEGFFS---KLKNIFT---SKSKVDDSIYEELEDLLLQSD 73 Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL-SKPFNWDFSHRPHVIL 115 +G+ + ++ +L + + + +Y+V +L+ + L+ SK + D ++ +VIL Sbjct: 74 VGLNMTTNLINQLEKEVKSNKIDNTEEVYEVLKKLMSEFLLSQDSKIYLKD--NKINVIL 131 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 +VGVNGVGKTT IGKL+ K G KV+L AGDTFR+AA++QL+ WA R D V G Sbjct: 132 IVGVNGVGKTTTIGKLALKYKKLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGREG 191 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 +D A++ Y+ +A++ K DV+IIDTAGRLHN + LM + K+ ++K+ + L Sbjct: 192 ADPASVVYDTLSRAESTKADVVIIDTAGRLHNKTNLMRELEKINNIIKKKIGEQQYESLL 251 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+D TTGQN L Q + F++V TG I+TK+DGTA+GG + + K P+ F+G+GE I Sbjct: 252 VIDGTTGQNGLNQAKEFNSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKI 311 Query: 296 NDLEPFVAKDFSAVI 310 DL F AKDF I Sbjct: 312 EDLIEFNAKDFVEAI 326 >gi|153806284|ref|ZP_01958952.1| hypothetical protein BACCAC_00540 [Bacteroides caccae ATCC 43185] gi|149130961|gb|EDM22167.1| hypothetical protein BACCAC_00540 [Bacteroides caccae ATCC 43185] Length = 319 Score = 215 bits (547), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 122/297 (41%), Positives = 179/297 (60%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG + T + I ++ + ++DD V + LE++LI SD+GV I++ + KR Sbjct: 15 LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRA 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVIG 129 A D V+ Q + + + + I +L + F+ +P+VI+VVGVNGVGKTT IG Sbjct: 74 AADKYVNTQELNHILRDEIAALLTENNSDDVADFDVPIERKPYVIMVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG V L A DTFR+AA++QL IW +R V ++G+D A++AY+ A Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGADPASVAYDTLSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A D++IIDTAGRLHN LM + K+ V+K++ P AP VL VLD +TGQNA Q Sbjct: 194 VANNADIVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPDEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F T + +TK+DGTA+GG +I I KIPV ++G+GEG+ DL+ F +F Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKNEF 310 >gi|27904538|ref|NP_777664.1| FtsY protei [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31340085|sp|Q89B28|FTSY_BUCBP RecName: Full=Cell division protein ftsY homolog gi|27903935|gb|AAO26769.1| FtsY protei [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 397 Score = 215 bits (547), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 115/271 (42%), Positives = 171/271 (63%), Gaps = 14/271 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH-------KM 95 + + +++E+ L+ SDIGV +++V+ L+ VS Q L +++ +I K+ Sbjct: 123 NSLLDDIEEQLLVSDIGVRTTRELVDSLIK------VSTQHELKNLNLIIEILKSKMKKI 176 Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 L + P N ++ + VILVVGVNGVGKTT+IGKL+K G V+LAAGDTFR+AAI Sbjct: 177 LNKVEGPLNINYKN-LFVILVVGVNGVGKTTLIGKLAKNYKKKGKSVILAAGDTFRAAAI 235 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 DQLK+W + S + EIGSD A++ Y+A K A+ K +D+LIIDTAGRLHN + LM + Sbjct: 236 DQLKLWGEINSVSVITREIGSDPASVVYDAIKIAKLKCIDILIIDTAGRLHNKNNLMEEL 295 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 K+ RV+ ++D + VLDA GQN+++QV++FH TGL++TK+D TA+GG + Sbjct: 296 KKIKRVIHKIDSTISQETMLVLDACIGQNSIKQVKIFHESLNVTGLVITKLDSTAKGGVI 355 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 I IPV ++ GE D++ F + F Sbjct: 356 FSIAQEFLIPVRYISFGEDFEDIQVFNSNIF 386 >gi|160882777|ref|ZP_02063780.1| hypothetical protein BACOVA_00738 [Bacteroides ovatus ATCC 8483] gi|237720683|ref|ZP_04551164.1| recognition particle-docking protein FtsY [Bacteroides sp. 2_2_4] gi|260170246|ref|ZP_05756658.1| recognition particle-docking protein FtsY [Bacteroides sp. D2] gi|299145601|ref|ZP_07038669.1| signal recognition particle-docking protein FtsY [Bacteroides sp. 3_1_23] gi|315918609|ref|ZP_07914849.1| recognition particle-docking protein FtsY [Bacteroides sp. D2] gi|156111801|gb|EDO13546.1| hypothetical protein BACOVA_00738 [Bacteroides ovatus ATCC 8483] gi|229449518|gb|EEO55309.1| recognition particle-docking protein FtsY [Bacteroides sp. 2_2_4] gi|298516092|gb|EFI39973.1| signal recognition particle-docking protein FtsY [Bacteroides sp. 3_1_23] gi|313692484|gb|EFS29319.1| recognition particle-docking protein FtsY [Bacteroides sp. D2] Length = 319 Score = 214 bits (546), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 123/297 (41%), Positives = 179/297 (60%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG + T + I ++ + ++DD V + LE++LI SD+GV I++ + KR Sbjct: 15 LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRA 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLSK----PFNWDFSHRPHVILVVGVNGVGKTTVIG 129 A D V+ Q + + + I +L + F+ + +P+VI+VVGVNGVGKTT IG Sbjct: 74 AADKYVNTQELNLILRDEIAALLTENNSGDVADFDVPIARKPYVIMVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG V L A DTFR+AA++QL IW +R V ++G+D A++AY+ A Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGADPASVAYDTLSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A DV+IIDTAGRLHN LM + K+ V+K++ P AP VL VLD +TGQNA Q Sbjct: 194 VANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPDEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F T + +TK+DGTA+GG +I I KIPV ++G+GEG+ DL+ F +F Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKNEF 310 >gi|87308020|ref|ZP_01090162.1| cell division protein FtsY [Blastopirellula marina DSM 3645] gi|87289102|gb|EAQ80994.1| cell division protein FtsY [Blastopirellula marina DSM 3645] Length = 328 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 128/297 (43%), Positives = 176/297 (59%), Gaps = 5/297 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISS--RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + +L +G TS L I D+ R +DD EL +L+R+D+GV A KI +++ Sbjct: 25 FFSRLKQGLVKTSRVLNTDIRDLFKQEGRLVDDEFLTELYAILVRTDMGVGPAGKIRDQV 84 Query: 71 LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 T + V + VL V +EL+ M P P + S P V++VVGVNG GKTT I Sbjct: 85 KTDFRGRVVHLSEVLTTVKTELVALMQQP-ETPIQFAESG-PTVVMVVGVNGSGKTTSIA 142 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G V+L AGDTFR+AA++QL IWADR D V +E GSD A++A++A A Sbjct: 143 KLASYLKSQGKSVVLGAGDTFRAAAVEQLSIWADRLGVDIVKAEQGSDPASVAFKAVDFA 202 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 DV+I+DTAGRL + LM + K+ RV + APH VL VLDAT GQN + Q Sbjct: 203 LQNNKDVVILDTAGRLQTQTNLMNELDKIRRVAGKKIEAAPHEVLLVLDATAGQNGISQA 262 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F A TG+I+TK+DGTA+GG ++PI T +PV ++GVGE D F A+ F Sbjct: 263 KGFSEAAQCTGIILTKLDGTAKGGVVVPIRQTFNLPVKYIGVGETPEDFALFNAEQF 319 >gi|298484172|ref|ZP_07002338.1| signal recognition particle-docking protein FtsY [Bacteroides sp. D22] gi|295084183|emb|CBK65706.1| signal recognition particle-docking protein FtsY [Bacteroides xylanisolvens XB1A] gi|298269676|gb|EFI11271.1| signal recognition particle-docking protein FtsY [Bacteroides sp. D22] Length = 319 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 123/297 (41%), Positives = 179/297 (60%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG + T + I ++ + ++DD V + LE++LI SD+GV I++ + KR Sbjct: 15 LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRA 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVIG 129 A D V+ Q + + + I +L + F+ + +P+VI+VVGVNGVGKTT IG Sbjct: 74 AADKYVNTQELNLILRDEIAALLTENNSDDVADFDVPITRKPYVIMVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG V L A DTFR+AA++QL IW +R V ++G+D A++AY+ A Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGADPASVAYDTLSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A DV+IIDTAGRLHN LM + K+ V+K++ P AP VL VLD +TGQNA Q Sbjct: 194 VANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPDEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F T + +TK+DGTA+GG +I I KIPV ++G+GEG+ DL+ F +F Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKNEF 310 >gi|256026607|ref|ZP_05440441.1| Signal recognition particle receptor FtsY [Fusobacterium sp. D11] gi|289764608|ref|ZP_06523986.1| signal recognition particle receptor FtsY [Fusobacterium sp. D11] gi|289716163|gb|EFD80175.1| signal recognition particle receptor FtsY [Fusobacterium sp. D11] Length = 328 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/315 (40%), Positives = 195/315 (61%), Gaps = 13/315 (4%) Query: 1 MSNQKVASESLSWIRKLTK---GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSD 57 + +K ++ ++ ++LTK GF S KLK T S ++DD + EELEDLL++SD Sbjct: 20 IDKEKEENQKVNISQRLTKSKEGFFS---KLKNIFT---SKSKVDDSIYEELEDLLLQSD 73 Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL-SKPFNWDFSHRPHVIL 115 +G+ + ++ +L + + + +Y+V +L+ + L+ SK + D ++ +VIL Sbjct: 74 VGLNMTTNLINQLEKEVKSNKIDNTEEVYEVLKKLMSEFLLSQDSKIYLKD--NKINVIL 131 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 +VGVNGVGKTT IGKL+ K G KV+L AGDTFR+AA++QL+ WA R D V G Sbjct: 132 IVGVNGVGKTTTIGKLALKYKKLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGREG 191 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 +D A++ Y+ +A++ K DV+IIDTAGRLHN + LM + K+ ++K+ + L Sbjct: 192 ADPASVVYDTLSRAESTKADVVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQQYESLL 251 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+D TTGQN L Q + F++V TG I+TK+DGTA+GG + + K P+ F+G+GE I Sbjct: 252 VIDGTTGQNGLNQAKEFNSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKI 311 Query: 296 NDLEPFVAKDFSAVI 310 DL F AKDF I Sbjct: 312 EDLIEFNAKDFVEAI 326 >gi|229496218|ref|ZP_04389938.1| signal recognition particle-docking protein FtsY [Porphyromonas endodontalis ATCC 35406] gi|229316796|gb|EEN82709.1| signal recognition particle-docking protein FtsY [Porphyromonas endodontalis ATCC 35406] Length = 317 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 118/278 (42%), Positives = 169/278 (60%), Gaps = 5/278 (1%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLY-DVSELIHK 94 ++DD V + LED+LI SD+GV KI+ E + +Y + +L ++ L+ + Sbjct: 39 KVDDEVLDNLEDVLISSDVGVDTTLKIIKRIEERVARDKYVSTAELNGILRSEIEALLTE 98 Query: 95 MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 F +P+VI+VVGVNGVGKTT IGKL+ + AG KV++ A DTFR+AA Sbjct: 99 SGTIDGDSFVLPTESKPYVIMVVGVNGVGKTTTIGKLAYQFKAAGHKVVIGAADTFRAAA 158 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 IDQL +WA+R + ++G+D A++AY+ A A+ DV++IDTAGRLHN LM Sbjct: 159 IDQLSVWAERVDVPMIKQKMGADPASVAYDTVASAVAQDADVVLIDTAGRLHNKVGLMNE 218 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + K+ RV++++ P AP VL VLD +TGQNA Q F A L +TK+DGTA+GG Sbjct: 219 LTKIKRVMQKVVPDAPQEVLLVLDGSTGQNAFEQARQFTAATEVNALAVTKLDGTAKGGV 278 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +I I IPV ++G+GE I DL+ F +F A + G Sbjct: 279 VIGISDQFNIPVKYIGLGEKIEDLQVFRKHEFVASLFG 316 >gi|188585992|ref|YP_001917537.1| signal recognition particle-docking protein FtsY [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350679|gb|ACB84949.1| signal recognition particle-docking protein FtsY [Natranaerobius thermophilus JW/NM-WN-LF] Length = 310 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 122/258 (47%), Positives = 162/258 (62%), Gaps = 8/258 (3%) Query: 53 LIRSDIGVAVAQKIVEEL---LTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 LI +D+GV KIVE L + + KD +V +VL D + MLM K Sbjct: 43 LISADVGVDTTLKIVENLRQRIKEEKIKDSETVNQVLKDE---MKDMLMQKDKSLTPQ-E 98 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P V LVVGVNGVGKTT IGKL+ K G KV+LAAGDTFR+AAIDQL+IW DR D Sbjct: 99 GTPKVSLVVGVNGVGKTTSIGKLAYKHKQEGKKVVLAAGDTFRAAAIDQLQIWGDRVGVD 158 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + + G+D AA+ Y+A + +A+ D LI DTAGRLHN LM + K+ R+++R Sbjct: 159 VIKHQEGADPAAVVYDAIQAGRARNADHLICDTAGRLHNKKNLMEELKKVSRIIEREIGT 218 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 PH V VLDATTGQNAL Q ++F V +G+I+TK+DGTA+GG ++ + +IP+ + Sbjct: 219 PPHDVYMVLDATTGQNALSQAKLFSEVTPVSGIILTKLDGTAKGGIVLALANEMEIPIKY 278 Query: 289 LGVGEGINDLEPFVAKDF 306 +GVGEG+ DL+ F F Sbjct: 279 IGVGEGMEDLQDFDPDQF 296 >gi|160880574|ref|YP_001559542.1| signal recognition particle-docking protein FtsY [Clostridium phytofermentans ISDg] gi|160429240|gb|ABX42803.1| signal recognition particle-docking protein FtsY [Clostridium phytofermentans ISDg] Length = 310 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 131/300 (43%), Positives = 183/300 (61%), Gaps = 4/300 (1%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 E + +L G A T + I I + S +DD EELE+ LI +D+G+ I+ Sbjct: 3 EKKGFFSRLASGLAKTRDNVISSIESIFTGSSNIDDDFYEELEETLIMADLGINATTAII 62 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTT 126 E L K + D+ L+ M +S N ++F + V+L++GVNGVGKTT Sbjct: 63 ENLKNKVKENKIKEPSECRDL--LMASMREQMSLQENAYEFENHKSVVLLIGVNGVGKTT 120 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 +GKL+ ++ D+G KVM+AA DTFR+AAI+QL WA+R D + + GSD AA+ Y+A Sbjct: 121 SVGKLAGQLKDSGKKVMVAAADTFRAAAIEQLTEWANRAHVDIIAQKEGSDPAAVIYDAV 180 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A+++ VD+LI DTAGRLHN LM + K+ RV++R P A L VLD TTGQNAL Sbjct: 181 TAAKSRNVDILICDTAGRLHNKKNLMEELRKIDRVIEREYPGAYRETLVVLDGTTGQNAL 240 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q + F+ VA TG+++TK+DGTA+GG I I KIPV ++GVGE I+DL+ F DF Sbjct: 241 AQAKQFNEVADITGIVLTKLDGTAKGGIAIAIQSELKIPVKYIGVGEQIDDLQKFDPDDF 300 >gi|78187767|ref|YP_375810.1| cell division transporter substrate-binding protein FtsY [Chlorobium luteolum DSM 273] gi|78167669|gb|ABB24767.1| signal recognition particle-docking protein FtsY [Chlorobium luteolum DSM 273] Length = 317 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/308 (41%), Positives = 192/308 (62%), Gaps = 6/308 (1%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVE--EL 70 + +LT+G T L+E + + + +DD EELE++L+ +D+GV + IVE L Sbjct: 9 LSRLTEGLGKTRETLREKLAVVTKGKTEIDDEFLEELENILVGADVGVEMTLDIVEAITL 68 Query: 71 LTKR--YAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 KR Y + + R+L D +S ++ + F+ + RPHVIL+VGVNG GKTT Sbjct: 69 RAKRETYRSEEELNRMLLDEISGMLRDSSLEHPVEFDAPLAARPHVILIVGVNGAGKTTS 128 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 + KL+ AG KV++AA DTFR+AA +QL++WA+R + G+D A++ ++A Sbjct: 129 VAKLASNYERAGKKVVIAAADTFRAAAYEQLQVWAERAGVPLIGQGQGADPASVVFDAVS 188 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A A+ DV+++DTAGRLHN S LM + K++RV K+ P APH VL VLD TTGQNA++ Sbjct: 189 SAVARGTDVVLVDTAGRLHNKSHLMEELAKIMRVAKKKIPEAPHEVLLVLDGTTGQNAVQ 248 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 Q F TG+I+TK+DGTA+GG ++ I K+PV ++GVGE I+DL+ F + F Sbjct: 249 QAREFMKFVHVTGIIVTKLDGTAKGGIVLSISRELKLPVKYIGVGEKIDDLQLFDRRQFV 308 Query: 308 AVITGCLD 315 A + G L+ Sbjct: 309 AALLGRLE 316 >gi|82703851|ref|YP_413417.1| signal recognition particle-docking protein FtsY [Nitrosospira multiformis ATCC 25196] gi|82411916|gb|ABB76025.1| signal recognition particle-docking protein FtsY [Nitrosospira multiformis ATCC 25196] Length = 328 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 120/304 (39%), Positives = 183/304 (60%), Gaps = 10/304 (3%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 +W ++ +G + T L + ++ + +D+ + EE+E +L+ +D GV+ ++EEL Sbjct: 20 NWGVRVRQGLSRTRNNLGKRLSGLFGGGAIDEDLYEEMETILLTADAGVSATTWLLEELR 79 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K ++ L + + E + +L PL++P + +H P +I++ GVNG GKTT IGK Sbjct: 80 RKVKRNGLTDASQLKEALQEALVDLLEPLAQPLDTS-AHHPFIIMLTGVNGAGKTTSIGK 138 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG----SDAAALAYEAF 186 L+ G V+LAAGDTFR+AA +QL W +R + E D AA+ ++A Sbjct: 139 LAHYYQLQGKSVLLAAGDTFRAAAREQLMAWGERNRVAVIAQESSDQQRGDPAAVIFDAV 198 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A+A+ +D+++ DTAGRL LM I K+ RV+ + +P APH L VLDA TGQNA+ Sbjct: 199 NAAKARGIDIVLADTAGRLATQLHLMEEIKKVKRVIAKTEPGAPHETLLVLDANTGQNAV 258 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK----IPVYFLGVGEGINDLEPFV 302 QV+ F G TGLI+TK+DGTA+GG L I + +PV F+GVGEG++DL PFV Sbjct: 259 NQVQAFDDALGLTGLIVTKLDGTAKGGVLAAIARQRQQKVPLPVRFIGVGEGLDDLRPFV 318 Query: 303 AKDF 306 A++F Sbjct: 319 AREF 322 >gi|332286877|ref|YP_004418788.1| cell division protein [Pusillimonas sp. T7-7] gi|330430830|gb|AEC22164.1| cell division protein [Pusillimonas sp. T7-7] Length = 378 Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 122/309 (39%), Positives = 184/309 (59%), Gaps = 11/309 (3%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 E SW+ +L KG + T + + + ++D+ + EELE LI +D GV +K++ Sbjct: 75 EKSSWLSRLKKGLSRTG----QNLGGLFVGVKVDESLFEELETALIMADAGVEATEKLLT 130 Query: 69 ELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L + R + +V + +++ L PL K F + P V+++ GVNG GKTT Sbjct: 131 ALRARVRKERLEDAGQVKTALRDILADHLAPLEKSFPLGKTA-PLVVMIAGVNGAGKTTS 189 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ G KV+LAAGDTFR+AA +QL W R + + + G D AA+A++A Sbjct: 190 IGKLANHFQAQGAKVLLAAGDTFRAAAREQLVEWGARNNVAVIAQD-GGDPAAVAFDAVN 248 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 +A++ V++IDTAGRL LM + K+ RV+ + D APH VL V+D TGQNA+ Sbjct: 249 AGRAREAGVVMIDTAGRLPTQLHLMEELKKIKRVIGKADGAAPHEVLLVIDGNTGQNAIA 308 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK----IPVYFLGVGEGINDLEPFVA 303 Q+ F A TGL++TK+DGTA+GG L + + +PVY++GVGE ++DL+PFVA Sbjct: 309 QIRAFDAALSLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPVPVYWIGVGESLHDLQPFVA 368 Query: 304 KDFSAVITG 312 K+F+A + G Sbjct: 369 KEFAAALLG 377 >gi|296328238|ref|ZP_06870768.1| cell division protein FtsY [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154638|gb|EFG95425.1| cell division protein FtsY [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 333 Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 131/311 (42%), Positives = 193/311 (62%), Gaps = 14/311 (4%) Query: 3 NQKVA-SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 NQKV S+ L+ K +GF S KLK T S ++DD + EELEDLL++SD+G+ Sbjct: 32 NQKVNISQRLT---KSKEGFFS---KLKNIFT---SKSKVDDSIYEELEDLLLQSDVGLN 82 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL-SKPFNWDFSHRPHVILVVGV 119 + ++ +L + + V +Y++ L+ + L+ SK + D ++ +VIL+VGV Sbjct: 83 MTTNLINQLEKEVKSNKVDNTEEVYEILKRLMSEFLLSQDSKIYLKD--NKINVILIVGV 140 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+ K + G KV+L AGDTFR+AA++QL+ WA R D + G+D A Sbjct: 141 NGVGKTTTIGKLALKYKNLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIIKGREGADPA 200 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ Y+ +A+A K D++IIDTAGRLHN + LM + K+ ++K+ + L V+D Sbjct: 201 SVVYDTLSRAEATKADIVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESLLVIDG 260 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQN L Q + F++V TG I+TK+DGTA+GG + + K P+ F+G+GE I DL Sbjct: 261 TTGQNGLNQAKEFNSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIGDLI 320 Query: 300 PFVAKDFSAVI 310 F AKDF I Sbjct: 321 EFNAKDFVEAI 331 >gi|19704409|ref|NP_603971.1| Signal recognition particle receptor FtsY [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714667|gb|AAL95270.1| Signal recognition particle receptor FtsY [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 333 Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 131/311 (42%), Positives = 193/311 (62%), Gaps = 14/311 (4%) Query: 3 NQKVA-SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 NQKV S+ L+ K +GF S KLK T S ++DD + EELEDLL++SD+G+ Sbjct: 32 NQKVNISQRLT---KSKEGFFS---KLKNIFT---SKSKVDDSIYEELEDLLLQSDVGLN 82 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL-SKPFNWDFSHRPHVILVVGV 119 + ++ +L + + V +Y++ L+ + L+ SK + D ++ +VIL+VGV Sbjct: 83 MTTNLINQLEKEVKSNKVDNTEEVYEILKRLMSEFLLSQDSKIYLKD--NKINVILIVGV 140 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+ K + G KV+L AGDTFR+AA++QL+ WA R D + G+D A Sbjct: 141 NGVGKTTTIGKLALKYKNLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIIKGREGADPA 200 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ Y+ +A+A K D++IIDTAGRLHN + LM + K+ ++K+ + L V+D Sbjct: 201 SVVYDTLSRAEATKADIVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESLLVIDG 260 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQN L Q + F++V TG I+TK+DGTA+GG + + K P+ F+G+GE I DL Sbjct: 261 TTGQNGLNQAKEFNSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIGDLI 320 Query: 300 PFVAKDFSAVI 310 F AKDF I Sbjct: 321 EFNAKDFVEAI 331 >gi|228998623|ref|ZP_04158210.1| Cell division protein ftsY [Bacillus mycoides Rock3-17] gi|229006123|ref|ZP_04163811.1| Cell division protein ftsY [Bacillus mycoides Rock1-4] gi|228755199|gb|EEM04556.1| Cell division protein ftsY [Bacillus mycoides Rock1-4] gi|228761091|gb|EEM10050.1| Cell division protein ftsY [Bacillus mycoides Rock3-17] Length = 332 Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 192/306 (62%), Gaps = 12/306 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K++ ++ + K +G T + + D++ R++D+ EELE++LI +D+GVA Sbjct: 12 EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILISADVGVAT 71 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115 +++++L + +++ R +V +I + L+ + K DFS+ + VIL Sbjct: 72 VMELIDQLKEEVQRRNIQDPR---EVQAVISEKLVGIYKG-EEDFSNELNIQQDQLTVIL 127 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGK++ K G V+LAAGDTFR+ AI+QL++W DR + + G Sbjct: 128 FVGVNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 187 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ Y+A + A+A+KVD+L+ DTAGRL N LM + K+ RV++R P APH VL Sbjct: 188 SDPAAVMYDAVQAAKARKVDILLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 247 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DATTGQN L Q + F TG+++TK+DGTA+GG ++ I +PV F+G+GE + Sbjct: 248 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 307 Query: 296 NDLEPF 301 +DL+ F Sbjct: 308 DDLQQF 313 >gi|256545171|ref|ZP_05472537.1| signal recognition particle-docking protein FtsY [Anaerococcus vaginalis ATCC 51170] gi|256399212|gb|EEU12823.1| signal recognition particle-docking protein FtsY [Anaerococcus vaginalis ATCC 51170] Length = 371 Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 128/303 (42%), Positives = 191/303 (63%), Gaps = 3/303 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65 E L + KL+KG + T + + ++ ++ ++DD + +ELE++LI +DIG+ + Sbjct: 63 TEEELGFFTKLSKGLSKTREQFSSKLKNLFTANVKIDDDLYDELEEILISADIGMKSTIE 122 Query: 66 IVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVG 123 IV++L + K V + + + E++ K L + N + S + VILV+GVNGVG Sbjct: 123 IVDQLKYEIKEKSVKNADEIFPLLKEIMEKKLDEKNLENNLNISKDKLTVILVIGVNGVG 182 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+ + G KV LAA DTFR+AAI+QL +WA +++ + + GSD +A+ + Sbjct: 183 KTTTIGKLANNLKKDGYKVTLAAADTFRAAAIEQLDLWAKQSNTQMIAHKEGSDPSAVIF 242 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A + A+A K DVLI DTAGRLHN LM + K+ R + +A L VLDATTGQ Sbjct: 243 DAIQAAKANKSDVLICDTAGRLHNKKNLMNELEKINRTISTHANNANRENLLVLDATTGQ 302 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NA+ Q+ F V TGLI+TK+DGTA+GG + P+ V ++PV ++GVGEGIN+LE F + Sbjct: 303 NAISQLREFKNVCDITGLILTKLDGTAKGGVIFPLQVELEVPVKYIGVGEGINNLEKFDS 362 Query: 304 KDF 306 K F Sbjct: 363 KSF 365 >gi|116623313|ref|YP_825469.1| signal recognition particle-docking protein FtsY [Candidatus Solibacter usitatus Ellin6076] gi|116226475|gb|ABJ85184.1| signal recognition particle-docking protein FtsY [Candidatus Solibacter usitatus Ellin6076] Length = 316 Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 124/303 (40%), Positives = 180/303 (59%), Gaps = 15/303 (4%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 S + KL G T L + D + ++ +D + +ELE LI +DIGVA +I+E + Sbjct: 14 SLLEKLKSGVQKTRAGLVTALEDALQGKKEIDADLLDELEFTLISADIGVATTSEILESI 73 Query: 71 LTKRYAKDVSVQR-VLYDVSEL---IHKMLMPL---SKPFNWDFSHRPHVILVVGVNGVG 123 + V+R L D EL I + L+ + S+ + P V+LVVGVNG G Sbjct: 74 RQR-------VERHQLADAGELKGLIRERLLEILQASERAPARVAEPPAVVLVVGVNGAG 126 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+ + + V+L A DTFR+AAI+QL+IW +RT + + GSD +A+ + Sbjct: 127 KTTTIGKLAHRFKNEQRSVLLCAADTFRAAAIEQLEIWGERTGTQVIRQKPGSDPSAVLF 186 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A A+++KVD +I+DTAGRL LM + KM R +++ P APH VL VLDATTGQ Sbjct: 187 DAVTAAKSRKVDYVIVDTAGRLQTKEHLMLELEKMNRTARKVIPDAPHEVLLVLDATTGQ 246 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 N L Q F +G TG+++TK+DGTA+GG ++ I +P+ ++GVGE I DL PF Sbjct: 247 NGLEQARKFTGSSGVTGIVLTKLDGTAKGGIVVAIARELNLPIRYIGVGEKIEDLLPFDG 306 Query: 304 KDF 306 + F Sbjct: 307 EKF 309 >gi|312111706|ref|YP_003990022.1| signal recognition particle-docking protein FtsY [Geobacillus sp. Y4.1MC1] gi|311216807|gb|ADP75411.1| signal recognition particle-docking protein FtsY [Geobacillus sp. Y4.1MC1] Length = 330 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 130/310 (41%), Positives = 192/310 (61%), Gaps = 10/310 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K+ ++ S K +G A T + D+I+ R++D+ EELE++LI +D+GV Sbjct: 9 EKITKQTDSVTEKFKQGLAKTRDSFAGRVNDLIARYRKVDEEFFEELEEILIGADVGVTT 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWDFSHRP-HVILV 116 ++V+EL K K ++Q ++ +I + L+ + KP + VIL Sbjct: 69 VMELVDEL--KMEVKRRNIQNP-QEMQAVISEKLVEIYRGGDDKPAELNIQEDGLTVILF 125 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGKL+ K+ G VMLAAGDTFR+ AI+QL++W +R A+ + GS Sbjct: 126 VGVNGVGKTTTIGKLAHKLKSEGKTVMLAAGDTFRAGAIEQLEVWGERVGAEVIKQTAGS 185 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D AA+ Y+A + A+A+ DVL+ DTAGRL N LM + K+ RV++R P APH VL V Sbjct: 186 DPAAVIYDAIQAAKARGADVLLCDTAGRLQNKVNLMKELEKVKRVIEREIPGAPHEVLLV 245 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDATTGQNA+ Q + F TG+++TK+DGTA+GG ++ I IPV F+G+GE ++ Sbjct: 246 LDATTGQNAMSQAKTFKEATNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKFVGLGEKVD 305 Query: 297 DLEPFVAKDF 306 DL+PF + + Sbjct: 306 DLQPFDPEQY 315 >gi|229047534|ref|ZP_04193124.1| Cell division protein ftsY [Bacillus cereus AH676] gi|228723781|gb|EEL75136.1| Cell division protein ftsY [Bacillus cereus AH676] Length = 329 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 193/306 (63%), Gaps = 12/306 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K++ ++ + K +G T + + D++ R++D+ EELE++LI +D+GVA Sbjct: 9 EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVAT 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115 +++++L + +++ + +V +I + L+ + K + DFS+ + V+L Sbjct: 69 VMELIDQLKEEVQRRNIQNPK---EVQAVISEKLVGIYKG-DSDFSNEINMQEDQLTVVL 124 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGKL+ K G V+LAAGDTFR+ AI+QL++W DR + + G Sbjct: 125 FVGVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ Y+A + A+A+KVDVL+ DTAGRL N LM + K+ RV++R P APH VL Sbjct: 185 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DATTGQN L Q + F TG+++TK+DGTA+GG ++ I +PV F+G+GE + Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304 Query: 296 NDLEPF 301 +DL+ F Sbjct: 305 DDLQQF 310 >gi|30021935|ref|NP_833566.1| cell division protein ftsY [Bacillus cereus ATCC 14579] gi|229129123|ref|ZP_04258096.1| Cell division protein ftsY [Bacillus cereus BDRD-Cer4] gi|29897491|gb|AAP10767.1| Cell division protein ftsY [Bacillus cereus ATCC 14579] gi|228654360|gb|EEL10225.1| Cell division protein ftsY [Bacillus cereus BDRD-Cer4] Length = 329 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 193/306 (63%), Gaps = 12/306 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K++ ++ + K +G T + + D++ R++D+ EELE++LI +D+GVA Sbjct: 9 EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVAT 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115 +++++L + +++ + +V +I + L+ + K + DFS+ + V+L Sbjct: 69 VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLVGIYKG-DSDFSNEINMQEDQLTVVL 124 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGKL+ K G V+LAAGDTFR+ AI+QL++W DR + + G Sbjct: 125 FVGVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ Y+A + A+A+KVDVL+ DTAGRL N LM + K+ RV++R P APH VL Sbjct: 185 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DATTGQN L Q + F TG+++TK+DGTA+GG ++ I +PV F+G+GE + Sbjct: 245 VIDATTGQNGLSQAKTFRETTNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304 Query: 296 NDLEPF 301 +DL+ F Sbjct: 305 DDLQQF 310 >gi|237744886|ref|ZP_04575367.1| signal recognition particle receptor FtsY [Fusobacterium sp. 7_1] gi|229432115|gb|EEO42327.1| signal recognition particle receptor FtsY [Fusobacterium sp. 7_1] Length = 328 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 129/315 (40%), Positives = 195/315 (61%), Gaps = 13/315 (4%) Query: 1 MSNQKVASESLSWIRKLTK---GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSD 57 + +K ++ ++ ++LTK GF S KLK T S ++DD + EELEDLL++SD Sbjct: 20 IDKEKEENQKVNISQRLTKSKEGFFS---KLKNIFT---SKSKVDDSIYEELEDLLLQSD 73 Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL-SKPFNWDFSHRPHVIL 115 +G+ + ++ +L + + + +Y+V +L+ + L+ SK + D ++ +VIL Sbjct: 74 VGLNMTTNLINQLEKEVKSNKIDNTEEVYEVLKKLMSEFLLSQDSKIYLKD--NKINVIL 131 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 +VGVNGVGKTT IGKL+ K G KV+L AGDTFR+AA++QL+ WA R D V G Sbjct: 132 IVGVNGVGKTTTIGKLALKYKKLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGREG 191 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 +D A++ Y+ +A++ K DV+IIDTAGRLHN + LM + K+ ++K+ + L Sbjct: 192 ADPASVVYDTLSRAESIKADVVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESLL 251 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+D TTGQN L Q + F++V TG I+TK+DGTA+GG + + K P+ F+G+GE I Sbjct: 252 VIDGTTGQNGLNQAKEFNSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKI 311 Query: 296 NDLEPFVAKDFSAVI 310 DL F AKDF I Sbjct: 312 EDLIEFNAKDFVEAI 326 >gi|124268406|ref|YP_001022410.1| signal recognition particle-docking protein FtsY [Methylibium petroleiphilum PM1] gi|124261181|gb|ABM96175.1| signal recognition particle-docking protein FtsY [Methylibium petroleiphilum PM1] Length = 350 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 134/312 (42%), Positives = 192/312 (61%), Gaps = 24/312 (7%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 W+ +L G T GIT + + R+D+ + EELE L+ +D G+ Q ++ +L Sbjct: 48 PWLDRLKSGLRRTG----SGITQVFTGTRIDEALYEELEAALLMADAGMPATQHLLADL- 102 Query: 72 TKRYAKD------VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 KR K+ +V+ +L D + ++L PL +P + RP VI+V GVNG GKT Sbjct: 103 -KRRVKEHKATDPAAVKLLLVDA---LAELLAPLQRPLVLGET-RPTVIMVAGVNGAGKT 157 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL++ ++D GLKV+LAA DTFR+AA +QL +WADR + V E G D AA++++A Sbjct: 158 TSIGKLTRHLADGGLKVLLAAADTFRAAAKEQLAVWADRNRVEIVSQE-GGDPAAVSFDA 216 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 K QA+ DV++ DTAGRL + LM + K+ R + + APH VL V+D TGQNA Sbjct: 217 VKAGQARGCDVVVADTAGRLPTQAHLMEELRKIKRTIGKAMDGAPHEVLLVVDGNTGQNA 276 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK-------IPVYFLGVGEGINDL 298 L QV+ F AV G TGL++TK+DGTA+GG L I + + +PVYF+GVGE + DL Sbjct: 277 LAQVKAFDAVLGLTGLVVTKLDGTAKGGVLAAIALWSRERDGASPVPVYFIGVGEKLADL 336 Query: 299 EPFVAKDFSAVI 310 E F A++FS + Sbjct: 337 ETFDAREFSQAL 348 >gi|125973443|ref|YP_001037353.1| signal recognition particle-docking protein FtsY [Clostridium thermocellum ATCC 27405] gi|256005339|ref|ZP_05430304.1| signal recognition particle-docking protein FtsY [Clostridium thermocellum DSM 2360] gi|281417643|ref|ZP_06248663.1| signal recognition particle-docking protein FtsY [Clostridium thermocellum JW20] gi|125713668|gb|ABN52160.1| signal recognition particle-docking protein FtsY [Clostridium thermocellum ATCC 27405] gi|255990658|gb|EEU00775.1| signal recognition particle-docking protein FtsY [Clostridium thermocellum DSM 2360] gi|281409045|gb|EFB39303.1| signal recognition particle-docking protein FtsY [Clostridium thermocellum JW20] gi|316940320|gb|ADU74354.1| signal recognition particle-docking protein FtsY [Clostridium thermocellum DSM 1313] Length = 302 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 115/252 (45%), Positives = 160/252 (63%), Gaps = 3/252 (1%) Query: 56 SDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114 SD+G+ + KI+E L + + K +V + E + ++L D + P VI Sbjct: 47 SDVGIDTSMKIIENLKNRVKETKTTDPAKVKELLKEELAQILSQGESDLKLDTT--PSVI 104 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 LVVGVNGVGKTT IGK++ + G KV+LAAGDTFR+AAIDQL+IWA+R + + Sbjct: 105 LVVGVNGVGKTTSIGKIANLLKSQGKKVILAAGDTFRAAAIDQLEIWANRVGVEIIKQAE 164 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 GSD AA+ Y+A + +A+K DVLI DTAGRLH LM + K+ R++ R P VL Sbjct: 165 GSDPAAVIYDAIQAVKARKADVLICDTAGRLHTKKNLMEELKKVFRIVDRELPGVSREVL 224 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VLDATTGQNA+ Q + F V TG+++TK+DGTA+GG +I + IPV +GVGE Sbjct: 225 LVLDATTGQNAISQAKTFSEVTDVTGIVLTKLDGTAKGGIIIAVASELNIPVKLIGVGEQ 284 Query: 295 INDLEPFVAKDF 306 ++DL+ F A++F Sbjct: 285 MDDLQRFNAREF 296 >gi|228992575|ref|ZP_04152502.1| Cell division protein ftsY [Bacillus pseudomycoides DSM 12442] gi|228767209|gb|EEM15845.1| Cell division protein ftsY [Bacillus pseudomycoides DSM 12442] Length = 329 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 192/306 (62%), Gaps = 12/306 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K++ ++ + K +G T + + D++ R++D+ EELE++LI +D+GVA Sbjct: 9 EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVAT 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115 +++++L + +++ R +V +I + L+ + K DFS+ + VIL Sbjct: 69 VMELIDQLKEEVQRRNIQDPR---EVQAVISEKLVGIYKG-EEDFSNELNIQQDQLTVIL 124 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGK++ K G V+LAAGDTFR+ AI+QL++W DR + + G Sbjct: 125 FVGVNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ Y+A + A+A+KVD+L+ DTAGRL N LM + K+ RV++R P APH VL Sbjct: 185 SDPAAVMYDAVQAAKARKVDILLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DATTGQN L Q + F TG+++TK+DGTA+GG ++ I +PV F+G+GE + Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304 Query: 296 NDLEPF 301 +DL+ F Sbjct: 305 DDLQQF 310 >gi|206971368|ref|ZP_03232319.1| signal recognition particle-docking protein FtsY [Bacillus cereus AH1134] gi|218233848|ref|YP_002368648.1| signal recognition particle-docking protein FtsY [Bacillus cereus B4264] gi|228922601|ref|ZP_04085901.1| Cell division protein ftsY [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954123|ref|ZP_04116152.1| Cell division protein ftsY [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960063|ref|ZP_04121727.1| Cell division protein ftsY [Bacillus thuringiensis serovar pakistani str. T13001] gi|229081102|ref|ZP_04213612.1| Cell division protein ftsY [Bacillus cereus Rock4-2] gi|229111318|ref|ZP_04240871.1| Cell division protein ftsY [Bacillus cereus Rock1-15] gi|229146418|ref|ZP_04274789.1| Cell division protein ftsY [Bacillus cereus BDRD-ST24] gi|229152046|ref|ZP_04280241.1| Cell division protein ftsY [Bacillus cereus m1550] gi|229180123|ref|ZP_04307467.1| Cell division protein ftsY [Bacillus cereus 172560W] gi|229192016|ref|ZP_04318986.1| Cell division protein ftsY [Bacillus cereus ATCC 10876] gi|296504342|ref|YP_003666042.1| cell division protein FtsY [Bacillus thuringiensis BMB171] gi|206734140|gb|EDZ51311.1| signal recognition particle-docking protein FtsY [Bacillus cereus AH1134] gi|218161805|gb|ACK61797.1| signal recognition particle-docking protein FtsY [Bacillus cereus B4264] gi|228591567|gb|EEK49416.1| Cell division protein ftsY [Bacillus cereus ATCC 10876] gi|228603332|gb|EEK60809.1| Cell division protein ftsY [Bacillus cereus 172560W] gi|228631395|gb|EEK88029.1| Cell division protein ftsY [Bacillus cereus m1550] gi|228637051|gb|EEK93510.1| Cell division protein ftsY [Bacillus cereus BDRD-ST24] gi|228672094|gb|EEL27385.1| Cell division protein ftsY [Bacillus cereus Rock1-15] gi|228702146|gb|EEL54622.1| Cell division protein ftsY [Bacillus cereus Rock4-2] gi|228799579|gb|EEM46532.1| Cell division protein ftsY [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805689|gb|EEM52279.1| Cell division protein ftsY [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228837030|gb|EEM82371.1| Cell division protein ftsY [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296325394|gb|ADH08322.1| cell division protein ftsY [Bacillus thuringiensis BMB171] Length = 329 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 193/306 (63%), Gaps = 12/306 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K++ ++ + K +G T + + D++ R++D+ EELE++LI +D+GVA Sbjct: 9 EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVAT 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115 +++++L + +++ + +V +I + L+ + K + DFS+ + V+L Sbjct: 69 VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLVGIYKG-DSDFSNEINMQEDQLTVVL 124 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGKL+ K G V+LAAGDTFR+ AI+QL++W DR + + G Sbjct: 125 FVGVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ Y+A + A+A+KVDVL+ DTAGRL N LM + K+ RV++R P APH VL Sbjct: 185 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DATTGQN L Q + F TG+++TK+DGTA+GG ++ I +PV F+G+GE + Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304 Query: 296 NDLEPF 301 +DL+ F Sbjct: 305 DDLQQF 310 >gi|319649602|ref|ZP_08003758.1| recognition particle-docking protein FtsY [Bacillus sp. 2_A_57_CT2] gi|317398764|gb|EFV79446.1| recognition particle-docking protein FtsY [Bacillus sp. 2_A_57_CT2] Length = 334 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 129/311 (41%), Positives = 190/311 (61%), Gaps = 12/311 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K+ ++ S K G T + D++S R++D+ EELE++LI +D+G Sbjct: 9 EKITKQTDSVTEKFKDGLTKTRDNFSNKVNDLVSRYRKVDEEFFEELEEILIGADVGFDT 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVIL 115 ++VEEL + K++ R DV +I + L+ + S N S VIL Sbjct: 69 VMELVEELRREVKRKNIQDPR---DVQAVISEKLVEIYDSAGETSTELNIQ-SEGLTVIL 124 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGKL+ K + G V+LAAGDTFR+ AI+QL++W +R D + G Sbjct: 125 FVGVNGVGKTTTIGKLAHKFKNEGKNVLLAAGDTFRAGAIEQLEVWGERVGVDVIKQGAG 184 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ Y+A + A+++K D+LI DTAGRL N LM + K+ RV++R P APH VL Sbjct: 185 SDPAAVMYDAVQSAKSRKADILICDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 VLDATTGQNA+ Q + F +G+++TK+DGTA+GG ++ I +IPV F+G+GE + Sbjct: 245 VLDATTGQNAMIQAKTFKEATDVSGIVLTKLDGTAKGGIVLAIRNELEIPVKFVGLGEKM 304 Query: 296 NDLEPFVAKDF 306 +DL+ F A+ + Sbjct: 305 DDLQEFNAEQY 315 >gi|222529161|ref|YP_002573043.1| signal recognition particle-docking protein FtsY [Caldicellulosiruptor bescii DSM 6725] gi|222456008|gb|ACM60270.1| signal recognition particle-docking protein FtsY [Caldicellulosiruptor bescii DSM 6725] Length = 301 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 127/299 (42%), Positives = 190/299 (63%), Gaps = 8/299 (2%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + +I +L +G + T E + ++ S +++DD + EELE++L+ SD+GV +QKI+E Sbjct: 1 MGFIDRLKEGLSKTKKNFTEKVESLLKSFKQIDDDLFEELEEVLVLSDVGVKTSQKIIEN 60 Query: 70 LLTKRYAKDVSVQRVLYD--VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L + V +R+L V EL+ + ++ + N P +IL+VGVNGVGKTT Sbjct: 61 LKER-----VKKERILDPQVVKELLKEEMLNIINLENKLSEKYPLIILMVGVNGVGKTTS 115 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGK++ + G KV++AA DTFR+AA +QL+IWA R D + GSD AA+ ++ + Sbjct: 116 IGKIANLLKSNGKKVLIAAADTFRAAAAEQLEIWAKRVGCDIIKHVEGSDPAAVVFDGIQ 175 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 +A+K DVLI+DTAGRLH L+ + K+ RV+ + P A L V+DATTGQNAL Sbjct: 176 AMRARKADVLIVDTAGRLHTKKNLIEELKKIDRVINQQMPEAAKETLLVIDATTGQNALN 235 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q + F+ +G+++TK+DGTA+GG +I I KIPV F+GVGE I+DL+ F AK+F Sbjct: 236 QAKEFNQAVNISGIVLTKLDGTAKGGIVISICDELKIPVKFVGVGEKIDDLQQFNAKEF 294 >gi|260887878|ref|ZP_05899141.1| signal recognition particle-docking protein FtsY [Selenomonas sputigena ATCC 35185] gi|330838743|ref|YP_004413323.1| signal recognition particle-docking protein FtsY [Selenomonas sputigena ATCC 35185] gi|260862384|gb|EEX76884.1| signal recognition particle-docking protein FtsY [Selenomonas sputigena ATCC 35185] gi|329746507|gb|AEB99863.1| signal recognition particle-docking protein FtsY [Selenomonas sputigena ATCC 35185] Length = 307 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 126/262 (48%), Positives = 174/262 (66%), Gaps = 2/262 (0%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP 111 LI SD+GV ++++ ++ KD++ L ++E I ++L S S P Sbjct: 44 LIMSDVGVKTTERLMADVRKGIKKKDINTPEDLKPFLAEKISEILSTGSDETRI-ASAGP 102 Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 V+LV+GVNGVGKTT IGKL+ + G VMLAA DTFR+AAIDQL+IW DRT + Sbjct: 103 TVLLVIGVNGVGKTTTIGKLAAYYKEQGKSVMLAAADTFRAAAIDQLQIWGDRTGVPVIR 162 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 E GSD AA+A++A K A+A+ +DVLIIDTAGRLH S LM + K+ RV++R APH Sbjct: 163 HEEGSDPAAVAFDAVKAARARSIDVLIIDTAGRLHTKSNLMEELKKINRVIQREIAEAPH 222 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 L VLDATTGQNA+ Q ++F A TG+++TK+DGTA+GG +I + +PV ++GV Sbjct: 223 ETLLVLDATTGQNAISQADLFQKAAAITGIVLTKLDGTAKGGVIIGLKSELSMPVKWIGV 282 Query: 292 GEGINDLEPFVAKDFSAVITGC 313 GEG++DL PF+AKDF+ + G Sbjct: 283 GEGVDDLRPFIAKDFARALFGL 304 >gi|328957314|ref|YP_004374700.1| signal recognition particle [Carnobacterium sp. 17-4] gi|328673638|gb|AEB29684.1| signal recognition particle [Carnobacterium sp. 17-4] Length = 332 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 117/308 (37%), Positives = 181/308 (58%), Gaps = 16/308 (5%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67 E+ K KG T + + ++ ++ R +D+ +ELE++LI +D+G +I Sbjct: 18 ETTEVTEKYEKGLEKTRKTFSQRMNELFANFRTVDEDFFDELEEVLIGADVGFEATMEIT 77 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV---------ILVVG 118 + L + K+ + V +I KM+ + + + + +P V ILVVG Sbjct: 78 DALRQEVKLKNAKASNEVQQV--IIEKMV----EIYEKEDTEKPEVHINPDGLTVILVVG 131 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNGVGKTT IGK++ G KV+LAAGDTFR+ AI+QL +W +R + V + G D Sbjct: 132 VNGVGKTTTIGKMAHLYQQEGKKVLLAAGDTFRAGAIEQLHVWGERVGVEVVSGKAGGDP 191 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A K+A+ ++ D+L +DTAGRL N LM + KM R+++R P PH VL VLD Sbjct: 192 AAVVFDAIKEAKQQQADILFVDTAGRLQNKVNLMNELEKMKRIIEREIPGGPHEVLLVLD 251 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 ATTGQNA+ Q + F TG+++TK+DGTA+GG ++ I IPV F+G+GE ++DL Sbjct: 252 ATTGQNAMNQAKQFKQTTNVTGIVLTKLDGTAKGGIVLAIRKELDIPVKFVGLGESMDDL 311 Query: 299 EPFVAKDF 306 + F ++ Sbjct: 312 QLFDPNEY 319 >gi|310658886|ref|YP_003936607.1| signal recognition particle-docking protein ftsy [Clostridium sticklandii DSM 519] gi|308825664|emb|CBH21702.1| Signal recognition particle-docking protein FtsY [Clostridium sticklandii] Length = 413 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 111/256 (43%), Positives = 165/256 (64%), Gaps = 5/256 (1%) Query: 57 DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVI 114 D+G KIV+ L ++ K S+Q V DV E + ++ + N +P ++ Sbjct: 157 DVGFETTLKIVDML--RKNVKKKSIQDV-KDVREELKLIVEEILSGDDSNLKLEPKPAIL 213 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 ++VGVNGVGKTT IGK++ ++ G V+LAAGDTFR+AA +QL++WADR + + + Sbjct: 214 VIVGVNGVGKTTSIGKIAMRLKSEGKSVLLAAGDTFRAAAAEQLEVWADRAGVELIKHQE 273 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 GSD +A+ ++A A+A+ DVLI DTAGRLHN LM + K+ R++ R P A VL Sbjct: 274 GSDPSAVIFDAISGAKARNTDVLICDTAGRLHNKKNLMQELAKIFRIIDREYPEATKEVL 333 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DATTGQNA+ QV++F A TG+I+TK+DGTA+GG ++ I ++P+ +GVGE Sbjct: 334 LVIDATTGQNAINQVKIFKEAAPLTGIILTKLDGTAKGGVVLSIKSEQQLPIKLIGVGEK 393 Query: 295 INDLEPFVAKDFSAVI 310 I DL+ F AK+F+ + Sbjct: 394 IEDLQDFNAKEFAKAL 409 >gi|307565268|ref|ZP_07627761.1| signal recognition particle-docking protein FtsY [Prevotella amnii CRIS 21A-A] gi|307345937|gb|EFN91281.1| signal recognition particle-docking protein FtsY [Prevotella amnii CRIS 21A-A] Length = 317 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 120/298 (40%), Positives = 183/298 (61%), Gaps = 10/298 (3%) Query: 17 LTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG T + + ++ + +DD V + LE++L+ SD+GV KI+ + KR Sbjct: 15 LDKGLEKTKANVFSKLARAVAGKSTVDDDVLDNLEEILVTSDVGVDTTIKIIHRI-EKRV 73 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-------RPHVILVVGVNGVGKTTVI 128 A+D V + + L ++ L++ D ++ +P+VILVVGVNGVGKTT I Sbjct: 74 ARDKYVSTSELN-AILKSEIANLLAENNTGDIANSEMLVGKKPYVILVVGVNGVGKTTTI 132 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ + AG KV L A DTFR+AA++Q+ IW R + ++G+D A++A++ + Sbjct: 133 GKLAYQFKQAGKKVYLGAADTFRAAAVEQIDIWGKRVGVPVIKQQMGADPASVAFDTLQS 192 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A DV++IDTAGRLHN LM + K+ V+K++ P APH V+ VLD +TGQNA Q Sbjct: 193 AKANDADVVLIDTAGRLHNKVNLMNELKKIKEVMKKVIPDAPHEVMLVLDGSTGQNAFEQ 252 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F AV + L +TK+DGTA+GG +I I K+PV ++G+GEG+ DL+ F ++F Sbjct: 253 AKQFAAVTQISSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQLFNKEEF 310 >gi|319795658|ref|YP_004157298.1| signal recognition particle-docking protein ftsy [Variovorax paradoxus EPS] gi|315598121|gb|ADU39187.1| signal recognition particle-docking protein FtsY [Variovorax paradoxus EPS] Length = 435 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 132/307 (42%), Positives = 188/307 (61%), Gaps = 11/307 (3%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 E W KL G T GI + + ++DD + EELE L+ +D GV + +++ Sbjct: 137 ERKGWFDKLKTGLRKTG----TGIQAVFVNAQIDDALYEELESALLMADTGVKATEYLLD 192 Query: 69 EL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 +L + ++ A D + +VL ++E I +L PL KP P VI+V GVNG GKT Sbjct: 193 DLKVRVKRQMATDAAQVKVL--LAEAIADLLRPLEKPLVIG-QFTPTVIMVAGVNGAGKT 249 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K ++ G V+LAA DTFR+AA +QL +WADR + + V +E G D +A++++A Sbjct: 250 TSIGKLTKHLATEGASVLLAAADTFRAAAREQLLVWADRNTVEIVSNE-GGDPSAVSFDA 308 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 +A+ DV+++DTAGRL LM + K+ RV+ + D APH VL V+D TGQNA Sbjct: 309 VNAGKARGKDVVLVDTAGRLPTQLHLMDELKKIKRVVTKADASAPHEVLLVIDGNTGQNA 368 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QV+ F G TGLI+TK+DGTA+GG L I IPVYF+GVGE + DLE F A++ Sbjct: 369 LAQVKAFDETLGLTGLIVTKLDGTAKGGVLCAIARERPIPVYFIGVGEKLEDLETFNARE 428 Query: 306 FSAVITG 312 F+ + G Sbjct: 429 FAQALLG 435 >gi|229019043|ref|ZP_04175883.1| Cell division protein ftsY [Bacillus cereus AH1273] gi|229025288|ref|ZP_04181708.1| Cell division protein ftsY [Bacillus cereus AH1272] gi|229162783|ref|ZP_04290740.1| Cell division protein ftsY [Bacillus cereus R309803] gi|228620665|gb|EEK77534.1| Cell division protein ftsY [Bacillus cereus R309803] gi|228736041|gb|EEL86616.1| Cell division protein ftsY [Bacillus cereus AH1272] gi|228742245|gb|EEL92405.1| Cell division protein ftsY [Bacillus cereus AH1273] Length = 332 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 122/306 (39%), Positives = 193/306 (63%), Gaps = 12/306 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K++ ++ + K +G T + + D++ R++D+ EELE++LI +D+GV+ Sbjct: 12 EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKIDEDFFEELEEILISADVGVST 71 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115 +++++L + +++ + +V +I + L+ + K + DFS+ + V+L Sbjct: 72 VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLVGIYKG-DSDFSNEVNIQEDQLTVVL 127 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGKL+ K G V+LAAGDTFR+ AI+QL++W DR + + G Sbjct: 128 FVGVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 187 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ Y+A + A+A+KVDVL+ DTAGRL N LM + K+ RV++R P APH VL Sbjct: 188 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 247 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DATTGQN L Q + F TG+++TK+DGTA+GG ++ I +PV F+G+GE + Sbjct: 248 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 307 Query: 296 NDLEPF 301 +DL+ F Sbjct: 308 DDLQQF 313 >gi|317121792|ref|YP_004101795.1| signal recognition particle-docking protein FtsY [Thermaerobacter marianensis DSM 12885] gi|315591772|gb|ADU51068.1| signal recognition particle-docking protein FtsY [Thermaerobacter marianensis DSM 12885] Length = 311 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 129/293 (44%), Positives = 184/293 (62%), Gaps = 2/293 (0%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 KL G A T +L I ++ LD+ + E+LE +LI +D+GVA Q+++E L + Sbjct: 5 KLKAGLARTREQLAGRIRAVVQGAALDESLYEDLEAVLITADVGVATTQRLLERLRERVR 64 Query: 76 AKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSK 133 A+ V + V ++E + +L ++ P P V+LVVGVNG GKTT GKL+ Sbjct: 65 AEGVRDAEAVPQLLAEEMRAVLEAVAAPPATPAGRDEPLVVLVVGVNGSGKTTTTGKLAS 124 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 + G +V++ A DTFR+AAIDQL+ W R+ A+ V G+D AA+A++A + A+A+ Sbjct: 125 RYRKEGWRVVVGAADTFRAAAIDQLERWCQRSGAELVRQHPGADPAAVAFDALQAARARG 184 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +VL++DTAGRLH LM + K +RVL+RLDP APH VL VLDATTGQNAL Q F Sbjct: 185 ANVLLVDTAGRLHTRVNLMEELRKTVRVLQRLDPTAPHEVLLVLDATTGQNALAQARHFT 244 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G TG+++TK+DGTARGG ++ I +PV ++G GEG +DL PF +F Sbjct: 245 DAVGVTGIVLTKLDGTARGGMVVAIADQLGLPVKWVGTGEGADDLAPFDPAEF 297 >gi|167745645|ref|ZP_02417772.1| hypothetical protein ANACAC_00337 [Anaerostipes caccae DSM 14662] gi|167654957|gb|EDR99086.1| hypothetical protein ANACAC_00337 [Anaerostipes caccae DSM 14662] Length = 316 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 125/313 (39%), Positives = 176/313 (56%), Gaps = 5/313 (1%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66 +E + +L G T + G I +DD EELE+++I SD+G+ I Sbjct: 8 AEKKGFFSRLAAGLTKTRDNIASGFDSIFKGFSSIDDDFYEELEEIMIMSDMGIDTTMSI 67 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 +E L K + + V K M L + +DF + V+LV+GVNGVGKTT Sbjct: 68 IENLKKKVKEEKIKEPEECRQVLIDSIKEQMKLGEE-AYDFKDKKSVVLVIGVNGVGKTT 126 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 +GK++ + G KVM+AA DTFR+ AI+QLK WA R D + G+D AA+ Y+A Sbjct: 127 SVGKMASLLKGEGKKVMMAAADTFRAGAIEQLKEWAGRAGVDIISQAEGADPAAVVYDAV 186 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A+A+ VDVL+ DTAGRLHN LM + K+ R+++R P A L VLD TTGQNAL Sbjct: 187 SAAKARNVDVLLCDTAGRLHNKKNLMDELKKINRIVEREYPEAYKETLIVLDGTTGQNAL 246 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q + F +G+I+TK+DGTA+GG I I IPV ++G+GE ++DL+PF D Sbjct: 247 AQAKQFKEATDISGIILTKLDGTAKGGIAIAIQAELGIPVKYIGIGEQVDDLQPF---DP 303 Query: 307 SAVITGCLDYGEE 319 + D G+E Sbjct: 304 DMFVNALFDRGDE 316 >gi|116333588|ref|YP_795115.1| Signal recognition particle GTPase [Lactobacillus brevis ATCC 367] gi|116098935|gb|ABJ64084.1| signal recognition particle-docking protein FtsY [Lactobacillus brevis ATCC 367] Length = 487 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 118/295 (40%), Positives = 178/295 (60%), Gaps = 9/295 (3%) Query: 19 KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77 KG T + + ++++ R +D+ ++LE+ LI +D+G +A K+ +EL + + Sbjct: 178 KGLEKTRTTFGQRLNALLANFRHVDESFFDDLEETLIGADVGFDMAVKLSDELRDEVKLQ 237 Query: 78 DVSVQRVLYDVSELIHKMLMPLSKPFNWDFS------HRPHVILVVGVNGVGKTTVIGKL 131 + + + +V ++ K++ N + + P VIL VGVNGVGKTT IGK+ Sbjct: 238 NAKKSQDVQNV--VVEKLVEIYEAAGNHETTAINMAETGPTVILFVGVNGVGKTTTIGKM 295 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + AG KV+LAA DTFR+ A +QL +WA R D V + SD AA+ ++A ++A+ Sbjct: 296 ANRYHQAGKKVLLAAADTFRAGATEQLDVWAKRADVDIVTGKPQSDPAAVVFDAVQKAKQ 355 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D+L +DTAGRL N LM + KM R++ R P APH VL VLDATTGQNAL Q ++ Sbjct: 356 DDYDILFVDTAGRLQNKVNLMNELEKMKRIITREIPSAPHEVLLVLDATTGQNALTQAKL 415 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F TG+++TK+DGTARGG ++ I +PV F+G+GE I+DL PF +F Sbjct: 416 FKESTAVTGIVLTKLDGTARGGIVLAIRNELHVPVKFIGLGEQISDLRPFDPNEF 470 >gi|163941585|ref|YP_001646469.1| signal recognition particle-docking protein FtsY [Bacillus weihenstephanensis KBAB4] gi|163863782|gb|ABY44841.1| signal recognition particle-docking protein FtsY [Bacillus weihenstephanensis KBAB4] Length = 329 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 122/306 (39%), Positives = 193/306 (63%), Gaps = 12/306 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K++ ++ + K +G T + + D++ R++D+ EELE++LI +D+GV+ Sbjct: 9 EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKIDEDFFEELEEILISADVGVST 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115 +++++L + +++ + +V +I + L+ + K + DFS+ + V+L Sbjct: 69 VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLVGIYKG-DSDFSNEVNIQEDQLTVVL 124 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGKL+ K G V+LAAGDTFR+ AI+QL++W DR + + G Sbjct: 125 FVGVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ Y+A + A+A+KVDVL+ DTAGRL N LM + K+ RV++R P APH VL Sbjct: 185 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMNELEKVKRVIEREVPGAPHEVLL 244 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DATTGQN L Q + F TG+++TK+DGTA+GG ++ I +PV F+G+GE + Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304 Query: 296 NDLEPF 301 +DL+ F Sbjct: 305 DDLQQF 310 >gi|229061450|ref|ZP_04198795.1| Cell division protein ftsY [Bacillus cereus AH603] gi|229134655|ref|ZP_04263464.1| Cell division protein ftsY [Bacillus cereus BDRD-ST196] gi|229168586|ref|ZP_04296309.1| Cell division protein ftsY [Bacillus cereus AH621] gi|228614992|gb|EEK72094.1| Cell division protein ftsY [Bacillus cereus AH621] gi|228648701|gb|EEL04727.1| Cell division protein ftsY [Bacillus cereus BDRD-ST196] gi|228717873|gb|EEL69521.1| Cell division protein ftsY [Bacillus cereus AH603] Length = 332 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 122/306 (39%), Positives = 193/306 (63%), Gaps = 12/306 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K++ ++ + K +G T + + D++ R++D+ EELE++LI +D+GV+ Sbjct: 12 EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKIDEDFFEELEEILISADVGVST 71 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115 +++++L + +++ + +V +I + L+ + K + DFS+ + V+L Sbjct: 72 VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLVGIYKG-DSDFSNEVNIQEDQLTVVL 127 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGKL+ K G V+LAAGDTFR+ AI+QL++W DR + + G Sbjct: 128 FVGVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 187 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ Y+A + A+A+KVDVL+ DTAGRL N LM + K+ RV++R P APH VL Sbjct: 188 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMNELEKVKRVIEREVPGAPHEVLL 247 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DATTGQN L Q + F TG+++TK+DGTA+GG ++ I +PV F+G+GE + Sbjct: 248 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 307 Query: 296 NDLEPF 301 +DL+ F Sbjct: 308 DDLQQF 313 >gi|320353172|ref|YP_004194511.1| signal recognition particle-docking protein FtsY [Desulfobulbus propionicus DSM 2032] gi|320121674|gb|ADW17220.1| signal recognition particle-docking protein FtsY [Desulfobulbus propionicus DSM 2032] Length = 592 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 113/282 (40%), Positives = 175/282 (62%), Gaps = 20/282 (7%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE---------ELLTKRYAKDVSVQRVL- 85 + + +D + E+LE++LI +D+GVA ++++ +L + K + ++L Sbjct: 309 LGKKEIDQDLFEQLEEILITADLGVATTLELIDGARKKVKRDQLSDPQALKAIIRDQILA 368 Query: 86 -YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 + SE +++MP PF VI+VVGVNGVGKTT IGK++ K AG V+L Sbjct: 369 YIEASEQPAELVMPEEGPF---------VIMVVGVNGVGKTTTIGKIAAKFVRAGQSVLL 419 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 AGDTFR+AAI+QL+IW +R + + + G+D +++ ++ + + DV++IDTAGR Sbjct: 420 VAGDTFRAAAINQLRIWGERVGVEVIAQKPGADPSSVVFDGLEYGTSHNYDVILIDTAGR 479 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 LH + LM + K+ RV+ + P APH V+ VLDATTGQN + Q ++FH G TGL +T Sbjct: 480 LHTSVNLMEELKKIKRVIGKKLPGAPHEVMLVLDATTGQNGISQAKLFHEAVGVTGLTLT 539 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 K+DGTA+GG + + K PV F+G+GE I+DL F A++F Sbjct: 540 KLDGTAKGGIVANVCRETKTPVRFIGIGEQIDDLRDFDAREF 581 >gi|255693888|ref|ZP_05417563.1| signal recognition particle-docking protein FtsY [Bacteroides finegoldii DSM 17565] gi|260620293|gb|EEX43164.1| signal recognition particle-docking protein FtsY [Bacteroides finegoldii DSM 17565] Length = 280 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 116/272 (42%), Positives = 170/272 (62%), Gaps = 7/272 (2%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMP 98 +DD V + LE++LI SD+GV I++ + KR A+D V+ Q + + + + I +L Sbjct: 1 MDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRAAEDKYVNTQELNHILRDEIAALLTE 59 Query: 99 LSK----PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 + F+ +P+VI+VVGVNGVGKTT IGKL+ + AG V L A DTFR+AA Sbjct: 60 NNSGDIADFDVAIDKKPYVIMVVGVNGVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAAA 119 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 ++QL IW +R + ++G+D A++AY+ A A D++IIDTAGRLHN LM Sbjct: 120 VEQLMIWGERVGVPVIKQKMGADPASVAYDTLSSAVANNADIVIIDTAGRLHNKVGLMNE 179 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + K+ V++++ P AP+ VL VLD +TGQNA Q + F T + +TK+DGTA+GG Sbjct: 180 LTKIKNVMRKVVPDAPNEVLLVLDGSTGQNAFEQAKQFTLATEVTAMAITKLDGTAKGGV 239 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +I I KIPV ++G+GEGI DL+ F +F Sbjct: 240 VIGISDQFKIPVKYIGLGEGIEDLQVFRKNEF 271 >gi|229071345|ref|ZP_04204568.1| Cell division protein ftsY [Bacillus cereus F65185] gi|228711799|gb|EEL63751.1| Cell division protein ftsY [Bacillus cereus F65185] Length = 329 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 193/306 (63%), Gaps = 12/306 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K++ ++ + K +G T + + D++ R++D+ EELE++LI +D+GVA Sbjct: 9 EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVAT 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115 +++++L + +++ + +V +I + L+ + K + DFS+ + V+L Sbjct: 69 VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLVGIYKG-DSDFSNEINMQGDQLTVVL 124 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGKL+ K G V+LAAGDTFR+ AI+QL++W DR + + G Sbjct: 125 FVGVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ Y+A + A+A+KVDVL+ DTAGRL N LM + K+ RV++R P APH VL Sbjct: 185 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DATTGQN L Q + F TG+++TK+DGTA+GG ++ I +PV F+G+GE + Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304 Query: 296 NDLEPF 301 +DL+ F Sbjct: 305 DDLQQF 310 >gi|295100363|emb|CBK97908.1| signal recognition particle-docking protein FtsY [Faecalibacterium prausnitzii L2-6] Length = 313 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 122/292 (41%), Positives = 176/292 (60%), Gaps = 4/292 (1%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 K+ G T I + ++ ++DD + +ELE+ LI +D+G VA K+V+ L + Sbjct: 13 KMKDGLEKTRTGFWGNILNTLTGSKIDDDLYDELEEQLILADVGGDVAMKLVDALRDRVQ 72 Query: 76 AKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K + D + ++I + P ++ P V+LV+GVNGVGKTT I KL+ Sbjct: 73 EKGLKTGEQAADALRDIIADEMRPETE---MALDGHPAVLLVIGVNGVGKTTSIAKLADY 129 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 + G KVMLAAGDTFR+AA +QL+IWA R V + G+D AA+ ++ K A A+ Sbjct: 130 YTRQGKKVMLAAGDTFRAAASEQLEIWAGRAGVPIVKAGEGADPAAVIFDTVKSATARGY 189 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D++I DTAGRLHN S LM+ + K+ R +++ P A L VLDA TGQNA+ Q + F Sbjct: 190 DMVIADTAGRLHNKSNLMSELSKISRSVRKAAPEASLETLLVLDAITGQNAISQAKEFCK 249 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 A TG+I+TK+DGTARGG ++ + +PV F+GVGEGI+DL PF + F Sbjct: 250 AADATGIILTKLDGTARGGCVVAVKQRLGLPVRFIGVGEGIDDLIPFTPEGF 301 >gi|317472752|ref|ZP_07932065.1| signal recognition particle-docking protein FtsY [Anaerostipes sp. 3_2_56FAA] gi|316899778|gb|EFV21779.1| signal recognition particle-docking protein FtsY [Anaerostipes sp. 3_2_56FAA] Length = 310 Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 125/313 (39%), Positives = 176/313 (56%), Gaps = 5/313 (1%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66 +E + +L G T + G I +DD EELE+++I SD+G+ I Sbjct: 2 AEKKGFFSRLAAGLTKTRDNIASGFDSIFKGFSSIDDDFYEELEEIMIMSDMGIDTTMSI 61 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 +E L K + + V K M L + +DF + V+LV+GVNGVGKTT Sbjct: 62 IENLKKKVKEEKIKEPEECRQVLIDSIKEQMKLGEE-AYDFKDKKSVVLVIGVNGVGKTT 120 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 +GK++ + G KVM+AA DTFR+ AI+QLK WA R D + G+D AA+ Y+A Sbjct: 121 SVGKMASLLKGEGKKVMMAAADTFRAGAIEQLKEWAGRAGVDIISQAEGADPAAVVYDAV 180 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A+A+ VDVL+ DTAGRLHN LM + K+ R+++R P A L VLD TTGQNAL Sbjct: 181 SAAKARNVDVLLCDTAGRLHNKKNLMDELKKINRIVEREYPEAYKETLIVLDGTTGQNAL 240 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q + F +G+I+TK+DGTA+GG I I IPV ++G+GE ++DL+PF D Sbjct: 241 AQAKQFKEATDISGIILTKLDGTAKGGIAIAIQAELGIPVKYIGIGEQVDDLQPF---DP 297 Query: 307 SAVITGCLDYGEE 319 + D G+E Sbjct: 298 DMFVNALFDRGDE 310 >gi|284051088|ref|ZP_06381298.1| cell division protein [Arthrospira platensis str. Paraca] Length = 399 Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 114/318 (35%), Positives = 191/318 (60%), Gaps = 12/318 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++VA E ++W++KL KG T L + I+ L+ EE+E LL+++D+GV Sbjct: 85 EEVAVEEITWLQKLWKGLGRTRRNLLNQLKAIVGQGPLNQAAVEEIEALLLQADVGVEAT 144 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-------HRPHVILV 116 I+E L + + + + + +L+ +L KP+ +S + ++ L+ Sbjct: 145 DVIIEALQNRLREDALPPEDAIAYLKQLLRDLL---EKPYQNGYSPTFAPEKEQLNIWLI 201 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IG 175 GVNG GKTT IGK++ + + ++AAGDTFR+AA++Q+K+W +R+ + + + Sbjct: 202 TGVNGAGKTTTIGKIAHIAQKSDYRSLIAAGDTFRAAAVEQVKVWGERSGVEVIANPGKN 261 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 +D AA+ Y+A A++++ ++LIIDTAGRL N LM + K+ RV+ + P A L Sbjct: 262 TDPAAVVYDAIAAAKSRQTELLIIDTAGRLQNKKNLMEELNKIRRVIDKQAPDAKVESLL 321 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 VLD+T GQN LRQ ++F VA +G+++TK+DGTA+GG + +V +P+ F+GVGE I Sbjct: 322 VLDSTLGQNGLRQAQVFAEVAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGVGESI 381 Query: 296 NDLEPFVAKDF-SAVITG 312 DL PF + +F A+++G Sbjct: 382 EDLRPFSSYEFIEALLSG 399 >gi|52141632|ref|YP_085188.1| recognition particle-docking protein [Bacillus cereus E33L] gi|118479069|ref|YP_896220.1| signal recognition particle-docking protein FtsY [Bacillus thuringiensis str. Al Hakam] gi|196042326|ref|ZP_03109602.1| signal recognition particle-docking protein FtsY [Bacillus cereus NVH0597-99] gi|225865828|ref|YP_002751206.1| signal recognition particle-docking protein FtsY [Bacillus cereus 03BB102] gi|228916484|ref|ZP_04080050.1| Cell division protein ftsY [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229186087|ref|ZP_04313256.1| Cell division protein ftsY [Bacillus cereus BGSC 6E1] gi|301055337|ref|YP_003793548.1| recognition particle-docking protein [Bacillus anthracis CI] gi|51975101|gb|AAU16651.1| recognition particle-docking protein [Bacillus cereus E33L] gi|118418294|gb|ABK86713.1| signal recognition particle-docking protein FtsY [Bacillus thuringiensis str. Al Hakam] gi|196026848|gb|EDX65479.1| signal recognition particle-docking protein FtsY [Bacillus cereus NVH0597-99] gi|225786630|gb|ACO26847.1| signal recognition particle-docking protein FtsY [Bacillus cereus 03BB102] gi|228597263|gb|EEK54914.1| Cell division protein ftsY [Bacillus cereus BGSC 6E1] gi|228843063|gb|EEM88145.1| Cell division protein ftsY [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300377506|gb|ADK06410.1| recognition particle-docking protein [Bacillus cereus biovar anthracis str. CI] Length = 329 Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 121/306 (39%), Positives = 193/306 (63%), Gaps = 12/306 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAV 62 +K++ ++ + K +G T + + D++ R++D+ EELE++LI +D+GV+ Sbjct: 9 EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVFRYRKVDEDFFEELEEILIGADVGVST 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115 +++++L + +++ R +V +I + L+ + K + DF++ + V+L Sbjct: 69 VMELIDQLKEEVQRRNIQDPR---EVQAVISEKLIEIYKG-DSDFTNEVNMQKDGLTVVL 124 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGK++ K G V+LAAGDTFR+ AI+QL++W DR + + G Sbjct: 125 FVGVNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ Y+A + A+A+KVDVL+ DTAGRL N LM + K+ RV++R P APH VL Sbjct: 185 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DATTGQN L Q + F TG+++TK+DGTA+GG ++ I +PV F+G+GE + Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304 Query: 296 NDLEPF 301 +DL+ F Sbjct: 305 DDLQQF 310 >gi|332685825|ref|YP_004455599.1| signal recognition particle receptor protein FtsY [Melissococcus plutonius ATCC 35311] gi|332369834|dbj|BAK20790.1| signal recognition particle receptor protein FtsY (alpha subunit) (TC 3.A.5.1.1) [Melissococcus plutonius ATCC 35311] Length = 460 Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 127/300 (42%), Positives = 185/300 (61%), Gaps = 9/300 (3%) Query: 15 RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 +K KG T + + ++ ++ R +D+ EELE+ LI +D+G + KI + L + Sbjct: 151 KKYEKGLTKTRKTFSQRLNELFANFRSVDEDFFEELEETLIGADVGFETSLKITDSL--R 208 Query: 74 RYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFS-----HRPHVILVVGVNGVGKTTV 127 + K +V++ + +I KM+ + + N D S + V+L VGVNGVGKTT Sbjct: 209 QEVKLRNVKKPAEVQNTIIEKMVDLYEEEGINEDNSLNIQTDQLTVMLFVGVNGVGKTTS 268 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ G KV++AA DTFR+ AIDQL +W +R + + + G D AA+ Y++ K Sbjct: 269 IGKLAYSYKQQGKKVVMAAADTFRAGAIDQLIVWGERANVKVIHGKAGGDPAAVVYDSIK 328 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ ++ D+L+IDTAGRL N LM + K+ RV++R P APH VL V+DATTGQNA+ Sbjct: 329 YAKEEQADILLIDTAGRLQNKVNLMNELEKIKRVIQREIPEAPHEVLLVIDATTGQNAMS 388 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 QV+ F TGLI+TK+DGTA+GG +I I +PV +G+GEGINDLEPF DF+ Sbjct: 389 QVKQFKETTDVTGLILTKLDGTAKGGIIIAIRNELHLPVKLVGLGEGINDLEPFSTNDFA 448 >gi|297584010|ref|YP_003699790.1| signal recognition particle-docking protein FtsY [Bacillus selenitireducens MLS10] gi|297142467|gb|ADH99224.1| signal recognition particle-docking protein FtsY [Bacillus selenitireducens MLS10] Length = 336 Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 126/307 (41%), Positives = 189/307 (61%), Gaps = 4/307 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K+++++ S K G + T + D++ R +D+ EELE++LI +D+GV Sbjct: 9 EKISTQTDSVTDKFRDGLSKTRDSFVGAMNDLVKDFREIDEDFFEELEEILIGADVGVHT 68 Query: 63 AQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGV 119 ++VEEL + +++ + + +SE + +ML N VIL VGV Sbjct: 69 VMELVEELKDEARTRNIKHAEDIRPVISEKLAEMLQKSENESKLNMQPEGELTVILFVGV 128 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+ + + G KV++AAGDTFR+ AI+QL++W +R+ D + + GSD A Sbjct: 129 NGVGKTTSIGKLAHQFKEDGKKVVMAAGDTFRAGAIEQLEVWGERSGVDVIKQQAGSDPA 188 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ Y+A + A++KK DVL+ DTAGRL N LM + K+ RVL R P APH VL VLDA Sbjct: 189 AVMYDAIQSAKSKKADVLLCDTAGRLQNKVNLMNELEKVKRVLAREIPSAPHEVLLVLDA 248 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNA+ Q + F +G+++TK+DGTA+GG ++ I IPV +G+GE I+DL Sbjct: 249 TTGQNAMSQAKAFGQATDVSGIVLTKLDGTAKGGIVLAIRNELDIPVKLVGLGEKIDDLH 308 Query: 300 PFVAKDF 306 F A+ + Sbjct: 309 EFRAEQY 315 >gi|256828204|ref|YP_003156932.1| signal recognition particle-docking protein FtsY [Desulfomicrobium baculatum DSM 4028] gi|256577380|gb|ACU88516.1| signal recognition particle-docking protein FtsY [Desulfomicrobium baculatum DSM 4028] Length = 524 Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 119/299 (39%), Positives = 182/299 (60%), Gaps = 9/299 (3%) Query: 16 KLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73 KL+ G T +L I +++ + DD EELE++L+ +D+GV Q++ + L K Sbjct: 229 KLSAGLGKTREQLTMRIDQLLAMTGNYDDAFWEELEEILLMADVGVNATQELSKRLRPKL 288 Query: 74 RYA--KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 R A +D + + L EL + P + S P V+L++GVNG GKTT I KL Sbjct: 289 RQAGERDAATFKTLMK-EELASVFIEPKTP----KVSQPPEVVLMIGVNGAGKTTTIAKL 343 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + G KV++AAGDTFR+AAI+QL++W+ R A F GSD AA+A+EA + A Sbjct: 344 AHRAQMQGRKVLVAAGDTFRAAAIEQLQVWSKRVGAGFYAKAHGSDPAAVAFEAVEYAMK 403 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + D++ +DTAGRL LM + K+ RVL + APH + VLD+TTGQNAL QV++ Sbjct: 404 EGYDLVFVDTAGRLQTKHNLMEELKKINRVLGKKLEGAPHRTILVLDSTTGQNALSQVKL 463 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F + +++TK+DGTA+GG ++ I + KIP+ F+G+GE + DL PF ++F++ + Sbjct: 464 FSQASPVDEIVLTKLDGTAKGGIIVAIALEFKIPISFVGLGEKMEDLRPFSGQEFASAL 522 >gi|293607597|ref|ZP_06689931.1| cell division protein FtsY [Achromobacter piechaudii ATCC 43553] gi|292814030|gb|EFF73177.1| cell division protein FtsY [Achromobacter piechaudii ATCC 43553] Length = 353 Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 121/304 (39%), Positives = 181/304 (59%), Gaps = 11/304 (3%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW+ +L +G + T + I I ++D+ + EELE LI +D G+ +K++ L Sbjct: 53 SWLSRLKQGLSRTG----QSIGGIFVGVKVDENLFEELESALIMADAGLEATEKLLTALR 108 Query: 72 TKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + + + +V + +L+ L PL + FN S +P V+++ GVNG GKTT IGK Sbjct: 109 ARVKKERIEDPAKVKTALRQLLADHLRPLERGFNLT-SAKPLVVMIAGVNGAGKTTSIGK 167 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ G V+LAAGDTFR+AA +QL W R + V S+ G D AA+A++A + Sbjct: 168 LAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVS-VISQDGGDPAAVAFDAVNAGR 226 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ + V+++DTAGRL LM + K+ RV+ + D APH VL V+D TGQNAL Q+ Sbjct: 227 ARGMGVVMVDTAGRLPTQLHLMEELKKIRRVIGKADASAPHEVLLVVDGNTGQNALAQIR 286 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK----IPVYFLGVGEGINDLEPFVAKDF 306 F A TGL++TK+DGTA+GG L + + IPVY++GVGE + DL+PFVA +F Sbjct: 287 AFDAAINLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGESLEDLQPFVADEF 346 Query: 307 SAVI 310 + + Sbjct: 347 AGAL 350 >gi|293373983|ref|ZP_06620324.1| signal recognition particle-docking protein FtsY [Bacteroides ovatus SD CMC 3f] gi|292631059|gb|EFF49696.1| signal recognition particle-docking protein FtsY [Bacteroides ovatus SD CMC 3f] Length = 286 Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 118/273 (43%), Positives = 169/273 (61%), Gaps = 7/273 (2%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLM 97 ++DD V + LE++LI SD+GV I++ + KR A D V+ Q + + + I +L Sbjct: 6 KVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRAAADKYVNTQELNLILRDEIAALLT 64 Query: 98 PLSK----PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 + F+ + +P+VI+VVGVNGVGKTT IGKL+ + AG V L A DTFR+A Sbjct: 65 ENNSGDVADFDVPIARKPYVIMVVGVNGVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAA 124 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A++QL IW +R V ++G+D A++AY+ A A DV+IIDTAGRLHN LM Sbjct: 125 AVEQLMIWGERVGVPVVKQKMGADPASVAYDTLSSAVANNADVVIIDTAGRLHNKVGLMN 184 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + K+ V+K++ P AP VL VLD +TGQNA Q + F T + +TK+DGTA+GG Sbjct: 185 ELTKIKNVMKKVVPDAPDEVLLVLDGSTGQNAFEQAKQFTLATEVTAMAITKLDGTAKGG 244 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +I I KIPV ++G+GEG+ DL+ F +F Sbjct: 245 VVIGISDQFKIPVKYIGLGEGMEDLQVFRKNEF 277 >gi|190573787|ref|YP_001971632.1| putative cell division protein [Stenotrophomonas maltophilia K279a] gi|190011709|emb|CAQ45328.1| putative cell division protein [Stenotrophomonas maltophilia K279a] Length = 438 Score = 213 bits (541), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 113/255 (44%), Positives = 158/255 (61%), Gaps = 1/255 (0%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK-MLMPLSKPFNWDFSHRP 111 LI +D+GV +VE L + +++ + L +L P++KP D + +P Sbjct: 173 LITADVGVGATTDLVEGLRKRMKSREFADANALLAALRAELIAILQPVAKPLVIDRNAKP 232 Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 V+L VGVNGVGKTT IGKL+K+ D G +MLAAGDTFR+AA+ QL+ W +R V Sbjct: 233 FVVLTVGVNGVGKTTTIGKLAKRFKDEGHSLMLAAGDTFRAAAVAQLQAWGERNGVAVVA 292 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 +DAA++A++A + +A+ VLI DTAGRLH S LM +GK+ RVL ++D APH Sbjct: 293 QGQNADAASVAFDALQAGKARGTSVLIADTAGRLHTQSGLMNELGKIRRVLGKIDATAPH 352 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 VL V+D TTGQNAL Q+ F+A TGL++TK+DGTA+GG + + IP+ F G+ Sbjct: 353 EVLMVIDGTTGQNALSQLRQFNAAVNVTGLVVTKLDGTAKGGVVFALAREFGIPIRFAGI 412 Query: 292 GEGINDLEPFVAKDF 306 GE DL F + F Sbjct: 413 GERPEDLRVFDPEAF 427 >gi|47570280|ref|ZP_00240929.1| signal recognition particle-docking protein FtsY [Bacillus cereus G9241] gi|229157423|ref|ZP_04285501.1| Cell division protein ftsY [Bacillus cereus ATCC 4342] gi|47553044|gb|EAL11446.1| signal recognition particle-docking protein FtsY [Bacillus cereus G9241] gi|228626150|gb|EEK82899.1| Cell division protein ftsY [Bacillus cereus ATCC 4342] Length = 329 Score = 213 bits (541), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 121/306 (39%), Positives = 193/306 (63%), Gaps = 12/306 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAV 62 +K++ ++ + K +G T + + D++ R++D+ EELE++LI +D+GV+ Sbjct: 9 EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVFRYRKVDEDFFEELEEILIGADVGVST 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115 +++++L + +++ R +V +I + L+ + K + DF++ + V+L Sbjct: 69 VMELIDQLKEEVQRRNIQDPR---EVQAVISEKLIEIYKG-DSDFTNEINMQKDGLTVVL 124 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGK++ K G V+LAAGDTFR+ AI+QL++W DR + + G Sbjct: 125 FVGVNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ Y+A + A+A+KVDVL+ DTAGRL N LM + K+ RV++R P APH VL Sbjct: 185 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DATTGQN L Q + F TG+++TK+DGTA+GG ++ I +PV F+G+GE + Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304 Query: 296 NDLEPF 301 +DL+ F Sbjct: 305 DDLQQF 310 >gi|329963573|ref|ZP_08301052.1| signal recognition particle-docking protein FtsY [Bacteroides fluxus YIT 12057] gi|328528562|gb|EGF55533.1| signal recognition particle-docking protein FtsY [Bacteroides fluxus YIT 12057] Length = 319 Score = 213 bits (541), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 121/296 (40%), Positives = 176/296 (59%), Gaps = 6/296 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEEL----L 71 L KG + T + I ++ + ++DD V + LE++LI SD+GV KI+E + Sbjct: 15 LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLKIIERIEKRAA 74 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++Y + +L D ++ L+ + F + +P+VI+VVGVNGVGKTT IGK Sbjct: 75 AEKYMNAQELNMILRDEIAALLTENNSDDVDDFEAPITKKPYVIMVVGVNGVGKTTTIGK 134 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + AG V L A DTFR+AA++QL IW +R V ++GSD A++A++ A Sbjct: 135 LAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGSDPASVAFDTLSSAV 194 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A DV+IIDTAGRLHN LM + K+ V+K++ AP VL VLD +TGQNA Q Sbjct: 195 ANHADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVSGAPDEVLLVLDGSTGQNAFEQAR 254 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F T + +TK+DGTA+GG +I I KIPV ++G+GEG+ DL+ F K+F Sbjct: 255 QFTLATEVTAMAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKKEF 310 >gi|301168359|emb|CBW27949.1| cell division protein [Bacteriovorax marinus SJ] Length = 425 Score = 213 bits (541), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 123/311 (39%), Positives = 179/311 (57%), Gaps = 23/311 (7%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 +SW +L KG + +S ++ I I + + LDD EE+E+LL +DIG +A +++E L Sbjct: 115 ISWRDRLRKGLSRSSSEVWGKIGAIFTGKGLDDDTLEEVEELLYGADIGPTIAVELIEGL 174 Query: 71 LT------------KRYAK---DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115 K+Y K D + V V ++K FN + VI+ Sbjct: 175 EEEAKKDGFGEKEFKKYLKTFLDSKMNGVQATVDSDLYK--------FNEANRGKTKVIM 226 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VVGVNG GKTT IGKL+ K++ G KV++ A DTFR+AA+DQL++W R A + ++ G Sbjct: 227 VVGVNGAGKTTTIGKLATKLTAQGAKVVVGACDTFRAAAVDQLEVWCQRAGAQMIRAKEG 286 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 ++ + + Y+A + A + D I+DTAGRLH LM + K VLK+LD APH L Sbjct: 287 ANPSGVGYDALQTAINEGADYCILDTAGRLHTKGNLMEELKKSRDVLKKLDDSAPHQTLL 346 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DA TGQNALRQ E F+ G +GLI TK DG+++ G I IV K+P+ ++GVGE + Sbjct: 347 VIDAITGQNALRQAEEFNNTLGLSGLIFTKCDGSSKAGSAIGIVDKLKVPIAYIGVGEQV 406 Query: 296 NDLEPFVAKDF 306 DL F ++ Sbjct: 407 EDLNIFNLSEY 417 >gi|126661952|ref|ZP_01732951.1| putative recognition particle-docking protein [Flavobacteria bacterium BAL38] gi|126625331|gb|EAZ96020.1| putative recognition particle-docking protein [Flavobacteria bacterium BAL38] Length = 326 Score = 213 bits (541), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 122/299 (40%), Positives = 187/299 (62%), Gaps = 8/299 (2%) Query: 15 RKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 + L KG T +T ++ + ++D V + LE++L+ SD+GV KI+E + + Sbjct: 23 QSLDKGLEKTKTSFFSKLTKAVAGKSKVDADVLDNLEEILVSSDVGVNTTLKIIERI-EE 81 Query: 74 RYAKDV-----SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 R +KD + +L + ++ L+ + + F+ + +P+VI+VVGVNGVGKTT Sbjct: 82 RVSKDKYLGTDELNGILREEIASLLSETNSGEATQFDIPKNTKPYVIMVVGVNGVGKTTT 141 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ + AG V+L A DTFR+AAIDQL+IWADR V ++GSD A++A++ + Sbjct: 142 IGKLAYQFKKAGYNVVLGAADTFRAAAIDQLQIWADRVGVPIVKQQMGSDPASVAFDTLQ 201 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A A+ D++IIDTAGRLHN LM + K+ +V++++ + P+ VL VLD +TGQNA Sbjct: 202 SAVAQNADIVIIDTAGRLHNKVGLMNELSKVKKVMQKVVENTPNDVLLVLDGSTGQNAFE 261 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q + F A + L +TK+DGTA+GG +I I +IPV ++GVGEGI DL+ F +F Sbjct: 262 QAKQFTAATEVSCLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIEDLQVFNKYEF 320 >gi|307288867|ref|ZP_07568840.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0109] gi|306500139|gb|EFM69483.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0109] gi|315164394|gb|EFU08411.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX1302] Length = 442 Score = 213 bits (541), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 119/261 (45%), Positives = 168/261 (64%), Gaps = 8/261 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109 LI +D+G + KI E L ++ K +V++ + +I KM+ + N + Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230 Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P+ VIL VGVNGVGKTT IGKL+ + G KV++AA DTFR+ AIDQL +W +R S Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAS 290 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V G D AA+ ++A ++A+A++ DVL++DTAGRL N LM + K+ RV++R Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL V+DATTGQNA+ Q + F TGL++TK+DGTA+GG +I I +PV Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GEGINDLEPF A DF+ Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431 >gi|294780222|ref|ZP_06745594.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis PC1.1] gi|307270587|ref|ZP_07551885.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX4248] gi|307276682|ref|ZP_07557800.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX2134] gi|312953193|ref|ZP_07772039.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0102] gi|294452765|gb|EFG21195.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis PC1.1] gi|306506792|gb|EFM75944.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX2134] gi|306513168|gb|EFM81802.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX4248] gi|310628810|gb|EFQ12093.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0102] gi|315034799|gb|EFT46731.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0027] gi|315152761|gb|EFT96777.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0031] gi|315159403|gb|EFU03420.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0312] gi|323479025|gb|ADX78464.1| signal recognition particle-docking protein FtsY-like protein [Enterococcus faecalis 62] gi|327536215|gb|AEA95049.1| cell division protein FtsY [Enterococcus faecalis OG1RF] Length = 442 Score = 213 bits (541), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 119/261 (45%), Positives = 168/261 (64%), Gaps = 8/261 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109 LI +D+G + KI E L ++ K +V++ + +I KM+ + N + Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230 Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P+ VIL VGVNGVGKTT IGKL+ + G KV++AA DTFR+ AIDQL +W +R S Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAS 290 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V G D AA+ ++A ++A+A++ DVL++DTAGRL N LM + K+ RV++R Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL V+DATTGQNA+ Q + F TGL++TK+DGTA+GG +I I +PV Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GEGINDLEPF A DF+ Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431 >gi|228940935|ref|ZP_04103494.1| Cell division protein ftsY [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973864|ref|ZP_04134440.1| Cell division protein ftsY [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980454|ref|ZP_04140764.1| Cell division protein ftsY [Bacillus thuringiensis Bt407] gi|228779274|gb|EEM27531.1| Cell division protein ftsY [Bacillus thuringiensis Bt407] gi|228785889|gb|EEM33892.1| Cell division protein ftsY [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818771|gb|EEM64837.1| Cell division protein ftsY [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941616|gb|AEA17512.1| cell division protein ftsY [Bacillus thuringiensis serovar chinensis CT-43] Length = 329 Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 192/306 (62%), Gaps = 12/306 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K++ ++ + K G T + + D++ R++D+ EELE++LI +D+GVA Sbjct: 9 EKISKQTDTVTEKFKHGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVAT 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115 +++++L + +++ + +V +I + L+ + K + DFS+ + V+L Sbjct: 69 VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLVGIYKG-DSDFSNEINMQEDQLTVVL 124 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGKL+ K G V+LAAGDTFR+ AI+QL++W DR + + G Sbjct: 125 FVGVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ Y+A + A+A+KVDVL+ DTAGRL N LM + K+ RV++R P APH VL Sbjct: 185 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DATTGQN L Q + F TG+++TK+DGTA+GG ++ I +PV F+G+GE + Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304 Query: 296 NDLEPF 301 +DL+ F Sbjct: 305 DDLQQF 310 >gi|304382717|ref|ZP_07365209.1| cell division protein FtsY [Prevotella marshii DSM 16973] gi|304336168|gb|EFM02412.1| cell division protein FtsY [Prevotella marshii DSM 16973] Length = 319 Score = 212 bits (540), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 114/258 (44%), Positives = 163/258 (63%), Gaps = 5/258 (1%) Query: 54 IRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFS 108 I SD+GV KI+ E + +Y + VL D +++L+ + ++ ++ Sbjct: 53 ITSDVGVDTTLKIIHRIEERVARDKYVSTAELNEVLRDEITQLLSENHSSDNEQWDLPTD 112 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 H P+VIL+VGVNGVGKTT IGKL+ + AG KV L A DTFR+AAIDQL IW +R Sbjct: 113 HHPYVILIVGVNGVGKTTTIGKLAYQFKKAGKKVYLGAADTFRAAAIDQLCIWGERVGVP 172 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + ++GSD A++A++ A+A DV++IDTAGRLHN LM + K+ V+K++ P Sbjct: 173 VIKQQMGSDPASVAFDTISSAKANGADVVLIDTAGRLHNKVGLMNELKKIKDVMKKVVPT 232 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 AP V+ VLD +TGQNA Q + F AV TGL +TK+DGTA+GG +I I K+PV + Sbjct: 233 APDEVMLVLDGSTGQNAFEQAKQFAAVTQITGLTITKLDGTAKGGVVIGISDQMKVPVKY 292 Query: 289 LGVGEGINDLEPFVAKDF 306 +G+GEG+ DL+ F + F Sbjct: 293 IGLGEGMEDLQLFHRQQF 310 >gi|209525658|ref|ZP_03274195.1| signal recognition particle-docking protein FtsY [Arthrospira maxima CS-328] gi|209493827|gb|EDZ94145.1| signal recognition particle-docking protein FtsY [Arthrospira maxima CS-328] Length = 530 Score = 212 bits (540), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 113/318 (35%), Positives = 191/318 (60%), Gaps = 12/318 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++VA E ++W++KL KG T L + I+ L+ EE+E LL+++D+GV Sbjct: 216 EEVAVEEITWLQKLWKGLGRTRRNLLNQLKAIVGQGPLNQAAVEEIEALLLQADVGVEAT 275 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-------HRPHVILV 116 I+E L + + + + + +L+ +L KP+ +S + ++ L+ Sbjct: 276 DVIIEALQNRLLEDALPPEDAIAYLKQLLRDLL---EKPYQNGYSPTFAPEKEQLNIWLI 332 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IG 175 GVNG GKTT IGK++ + + ++AAGDTFR+AA++Q+K+W +R+ + + + Sbjct: 333 TGVNGAGKTTTIGKIAHIAQKSDYRTLIAAGDTFRAAAVEQVKVWGERSGVEVIANPGKN 392 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 +D AA+ Y+A A++++ ++L+IDTAGRL N LM + K+ RV+ + P A L Sbjct: 393 TDPAAVVYDAIAAAKSRETELLVIDTAGRLQNKKNLMEELNKIRRVIDKQAPDAKVESLL 452 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 VLD+T GQN LRQ ++F VA +G+++TK+DGTA+GG + +V +P+ F+GVGE I Sbjct: 453 VLDSTLGQNGLRQAQVFAEVAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGVGESI 512 Query: 296 NDLEPFVAKDF-SAVITG 312 DL PF + +F A+++G Sbjct: 513 EDLRPFSSYEFIEALLSG 530 >gi|257870564|ref|ZP_05650217.1| signal recognition particle protein [Enterococcus gallinarum EG2] gi|257804728|gb|EEV33550.1| signal recognition particle protein [Enterococcus gallinarum EG2] Length = 433 Score = 212 bits (540), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 116/260 (44%), Positives = 167/260 (64%), Gaps = 9/260 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FS 108 LI +D+G A KI + L + ++V + +V +I + L+ L D + Sbjct: 165 LIGADVGFDAAIKITDALRQEVKLRNV---KKPAEVQNVIIEKLVDLYGEAGVDEVNELN 221 Query: 109 HRP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P VIL VGVNGVGKTT IGKL+ + G KV+LAA DTFR+ AIDQL +W R Sbjct: 222 MQPGLTVILFVGVNGVGKTTSIGKLAHQFKSEGKKVLLAAADTFRAGAIDQLVVWGGRAG 281 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V + G D AA+ ++A ++A+A++ DVL++DTAGRL N LM + K+ R+++R++ Sbjct: 282 VEVVRGKAGGDPAAVVFDAMERAKAEQADVLLVDTAGRLQNKVNLMNELEKIKRIIQRVE 341 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P+APH VL VLDATTGQNA+ Q + F TGL++TK+DGTA+GG ++ I ++PV Sbjct: 342 PNAPHEVLLVLDATTGQNAMNQAKQFKETTDVTGLVLTKLDGTAKGGIVLAIRNELRLPV 401 Query: 287 YFLGVGEGINDLEPFVAKDF 306 +G+GEGINDLEPF +F Sbjct: 402 KLVGLGEGINDLEPFDPNEF 421 >gi|291566674|dbj|BAI88946.1| signal recognition particle docking protein FtsY [Arthrospira platensis NIES-39] Length = 572 Score = 212 bits (540), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 114/318 (35%), Positives = 191/318 (60%), Gaps = 12/318 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++VA E ++W++KL KG T L + I+ L+ EE+E LL+++D+GV Sbjct: 258 EEVAVEEITWLQKLWKGLGRTRRNLLNQLKAIVGQGPLNQAAVEEIEALLLQADVGVEAT 317 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-------HRPHVILV 116 I+E L + + + + + +L+ +L KP+ +S + ++ L+ Sbjct: 318 DVIIEALQNRLREDALPPEDAIAYLKQLLRDLL---EKPYQNGYSPTFAPEKEQLNIWLI 374 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IG 175 GVNG GKTT IGK++ + + ++AAGDTFR+AA++Q+K+W +R+ + + + Sbjct: 375 TGVNGAGKTTTIGKIAHIAQKSDYRSLIAAGDTFRAAAVEQVKVWGERSGVEVIANPGKN 434 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 +D AA+ Y+A A++++ ++LIIDTAGRL N LM + K+ RV+ + P A L Sbjct: 435 TDPAAVVYDAIAAAKSRQTELLIIDTAGRLQNKKNLMEELNKIRRVIDKQAPDAKVESLL 494 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 VLD+T GQN LRQ ++F VA +G+++TK+DGTA+GG + +V +P+ F+GVGE I Sbjct: 495 VLDSTLGQNGLRQAQVFAEVAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGVGESI 554 Query: 296 NDLEPFVAKDF-SAVITG 312 DL PF + +F A+++G Sbjct: 555 EDLRPFSSYEFIEALLSG 572 >gi|228909672|ref|ZP_04073495.1| Cell division protein ftsY [Bacillus thuringiensis IBL 200] gi|228849961|gb|EEM94792.1| Cell division protein ftsY [Bacillus thuringiensis IBL 200] Length = 329 Score = 212 bits (540), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 192/306 (62%), Gaps = 12/306 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K++ ++ + K G T + + D++ R++D+ EELE++LI +D+GVA Sbjct: 9 EKISKQTDTVTEKFKHGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVAT 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115 +++++L + +++ + +V +I + L+ + K + DFS+ + V+L Sbjct: 69 VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLVGIYKG-DSDFSNEINMQEDQLTVVL 124 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGKL+ K G V+LAAGDTFR+ AI+QL++W DR + + G Sbjct: 125 FVGVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ Y+A + A+A+KVDVL+ DTAGRL N LM + K+ RV++R P APH VL Sbjct: 185 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DATTGQN L Q + F TG+++TK+DGTA+GG ++ I +PV F+G+GE + Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304 Query: 296 NDLEPF 301 +DL+ F Sbjct: 305 DDLQQF 310 >gi|149183218|ref|ZP_01861664.1| signal recognition particle-docking protein FtsY [Bacillus sp. SG-1] gi|148849083|gb|EDL63287.1| signal recognition particle-docking protein FtsY [Bacillus sp. SG-1] Length = 332 Score = 212 bits (540), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 136/321 (42%), Positives = 195/321 (60%), Gaps = 31/321 (9%) Query: 11 LSWIRKLTKGFAST----SLKLKEGIT---DIISS---------RRLDDGVREELEDLLI 54 +S+ +KL + F ST + K K+G++ D SS R++D+ EELE++LI Sbjct: 1 MSFFKKLKEKFTSTPDSVTNKFKDGLSKTRDNFSSKVNDLVARYRKVDEDFFEELEEILI 60 Query: 55 RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-- 112 +D+G ++V++L K AK +R + + SEL + L + + D Sbjct: 61 GADVGFDTVMELVDQL--KFEAK----RRNIQETSELQSVISEKLVEIYEGDEGASSELN 114 Query: 113 -------VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 VIL VGVNGVGKTT IGK++ + G V+LAAGDTFR+ AIDQL++W +RT Sbjct: 115 IQEDTLTVILFVGVNGVGKTTTIGKMAHMFKEQGKNVLLAAGDTFRAGAIDQLEVWGERT 174 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + GSD AA+ Y+A + A+AKK D+LI DTAGRL N LM + K+ RV++R Sbjct: 175 GVPVIKHSEGSDPAAVIYDAVQSAKAKKADILICDTAGRLQNKVNLMNELQKVKRVIERE 234 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P APH VL VLDATTGQNAL Q + F +G+++TK+DGTA+GG +I I +IP Sbjct: 235 IPGAPHEVLLVLDATTGQNALLQAKTFKEATDVSGIVLTKLDGTAKGGIVIGIRNELQIP 294 Query: 286 VYFLGVGEGINDLEPFVAKDF 306 V F+G+GE ++DL+PF A+ + Sbjct: 295 VKFVGLGEKVDDLQPFDAEKY 315 >gi|323705467|ref|ZP_08117042.1| signal recognition particle-docking protein FtsY [Thermoanaerobacterium xylanolyticum LX-11] gi|323535369|gb|EGB25145.1| signal recognition particle-docking protein FtsY [Thermoanaerobacterium xylanolyticum LX-11] Length = 321 Score = 212 bits (540), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 124/294 (42%), Positives = 186/294 (63%), Gaps = 5/294 (1%) Query: 15 RKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 ++L G A T I I+S R++DD + EELE++LI +D+GV+ +KI++ L K Sbjct: 25 QRLRDGLARTRDNFTSKIDGILSFGRKVDDELFEELEEILILADVGVSTTEKIIDNLKEK 84 Query: 74 -RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 + K +++ ++E I+ ++ F +P +IL+VGVNGVGKTT IGKL+ Sbjct: 85 AKEQKLKDAEKIKELLAEEIYDIMEAKETSFKI---TQPTLILIVGVNGVGKTTTIGKLA 141 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 K G +V+L A DTFR+AAIDQL++WA + + + + E GSD A++ ++ K A+++ Sbjct: 142 NKFKRDGKRVLLVAADTFRAAAIDQLEVWAGKNNCEIIRHEEGSDPASVLFDGIKAAKSR 201 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 VDV++ DTAGRLHN LM + K+ RV +R VLDATTGQNA++Q ++F Sbjct: 202 NVDVILCDTAGRLHNKKNLMEELKKIYRVAQREFNEGNIETFLVLDATTGQNAIQQAKIF 261 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TG+I+TK+DGTA+GG +I I IPV F+GVGEGI+DL+ F ++ F Sbjct: 262 KEATDVTGIILTKLDGTAKGGIVISIKSELDIPVRFIGVGEGIDDLQEFDSEKF 315 >gi|325567327|ref|ZP_08143994.1| cell division protein FtsY [Enterococcus casseliflavus ATCC 12755] gi|325158760|gb|EGC70906.1| cell division protein FtsY [Enterococcus casseliflavus ATCC 12755] Length = 430 Score = 212 bits (540), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 127/309 (41%), Positives = 189/309 (61%), Gaps = 10/309 (3%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63 + A E+ S K TKG + + + ++ ++ R +D+ EE+E+ LI +D+G A Sbjct: 114 QAAPETESVQDKYTKGLTKSRKTFGQRMNELFANFRTVDEDFFEEVEETLIGADVGFDAA 173 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN----WDFSHRP--HVILVV 117 KI + L + ++V + DV +I + L+ L + + +P VIL V Sbjct: 174 MKIADALRQEVKLRNV---KKTADVQNVIIEKLVDLYGEAGVGEVNELNMQPGLTVILFV 230 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 GVNGVGKTT IGKL+ + G KV+LAA DTFR+ AIDQL +W +R + V G D Sbjct: 231 GVNGVGKTTSIGKLAHQFKAEGKKVLLAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGD 290 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 AA+ ++A ++A+ + DVL++DTAGRL N LM + K+ R+++R+DP APH VL VL Sbjct: 291 PAAVVFDAMERAKRENADVLLVDTAGRLQNKVNLMNELEKIKRIIQRVDPTAPHEVLLVL 350 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DATTGQNA+ Q + F +GL++TK+DGTA+GG ++ I ++PV +G+GEGIND Sbjct: 351 DATTGQNAMNQAKQFKETTDVSGLVLTKLDGTAKGGIVLAIRNELRLPVKLVGLGEGIND 410 Query: 298 LEPFVAKDF 306 LEPF +F Sbjct: 411 LEPFDPNEF 419 >gi|239624034|ref|ZP_04667065.1| signal recognition particle-docking protein FtsY [Clostridiales bacterium 1_7_47_FAA] gi|239522065|gb|EEQ61931.1| signal recognition particle-docking protein FtsY [Clostridiales bacterium 1_7_47FAA] Length = 314 Score = 212 bits (540), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 129/296 (43%), Positives = 181/296 (61%), Gaps = 4/296 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L +G A T + GI I S +DD EE+E+ LI D+G+ IVE+L Sbjct: 8 FFGRLVEGLAKTRNNIVSGIDSIFSGFSAIDDDFYEEIEETLIMGDLGIQTTMSIVEDLR 67 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGK 130 K + + ++ LI+ + + N ++F HR V+LV+GVNGVGKTT +GK Sbjct: 68 AKVKEQHIKEPEECKEL--LINSIKEQMDLGENAYEFEHRKSVVLVIGVNGVGKTTSVGK 125 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ ++ D+G KV+LAA DTFR+AAI+QL WA R D + + GSD AA+ Y+A A+ Sbjct: 126 LAGQLKDSGHKVILAAADTFRAAAIEQLTEWAGRAGVDIIAQQEGSDPAAVIYDAVAAAK 185 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 ++K DVLI DTAGRLHN LM + K+ R++ + P A L VLD TTGQNAL Q Sbjct: 186 SRKADVLICDTAGRLHNKKNLMEELRKINRIIDKEYPDAYRETLVVLDGTTGQNALAQAR 245 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F VA TG+I+TK+DGTA+GG + I +PV ++G+GE I+DL+ F A DF Sbjct: 246 QFMEVADITGIILTKLDGTAKGGIAVAIQSELGLPVKYIGIGEQIDDLQKFNADDF 301 >gi|260219894|emb|CBA26882.1| Cell division protein ftsY homolog [Curvibacter putative symbiont of Hydra magnipapillata] Length = 308 Score = 212 bits (540), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 131/304 (43%), Positives = 187/304 (61%), Gaps = 9/304 (2%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 E W+ KL G T+ I+ + ++D+ + E+LE L+ +D GVA Q + + Sbjct: 10 ERQKWLDKLKAGLGKTA----SSISGVFGGSQIDEALYEDLEGALLMADAGVAATQLLTD 65 Query: 69 ELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 L K A V+ L ++ +EL ++L PL KP H P VI+V GVNG GKTT Sbjct: 66 ALRKKVKATGVTHPTALKNILIAELT-ELLQPLQKPLVIG-EHTPTVIMVAGVNGAGKTT 123 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+K ++D+ V+LAA DTFR+AA +QL +WADR + + V E G D AA++Y++ Sbjct: 124 SIGKLTKHLADSNASVLLAAADTFRAAAREQLTVWADRNTVEIVSQE-GGDPAAVSYDSV 182 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 +A+ DV++IDTAGRL LM + K+ RV+ + D APH VL V+D TGQNA+ Sbjct: 183 TAGKARGKDVVLIDTAGRLPTQLHLMEELKKIKRVIGKADGTAPHEVLLVIDGNTGQNAV 242 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QV+ F G TGLI+TK+DGTA+GG L I IPVYF+GVGE +++LE F A++F Sbjct: 243 AQVKAFDDALGLTGLIVTKLDGTAKGGVLAAIARERPIPVYFIGVGEKLDELETFNAREF 302 Query: 307 SAVI 310 + + Sbjct: 303 AQAL 306 >gi|298372769|ref|ZP_06982759.1| signal recognition particle-docking protein FtsY [Bacteroidetes oral taxon 274 str. F0058] gi|298275673|gb|EFI17224.1| signal recognition particle-docking protein FtsY [Bacteroidetes oral taxon 274 str. F0058] Length = 316 Score = 212 bits (539), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 122/295 (41%), Positives = 176/295 (59%), Gaps = 6/295 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L G T + + I+ IS + ++DD + + +E+ LI +D+GV KI+E L KR Sbjct: 15 LDNGLDKTKTSIFDKISRAISGKSKIDDEILDNIEEALISADVGVNTTIKIIERL-EKRI 73 Query: 76 AKD--VSVQRVLYDVSELIHKML--MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 A+D VS + +++ I +L P S + P++ILVVGVNGVGKTT IGKL Sbjct: 74 ARDKYVSSDELHNIINQEIVALLSEQPQSGTSFENLPSNPYIILVVGVNGVGKTTTIGKL 133 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + AG KV L A DTFR+AAIDQL IW R + ++G+D A++ ++ A+A Sbjct: 134 ANRFKQAGKKVFLGAADTFRAAAIDQLMIWGQRVDVPVIKHKMGADPASVVFDTLSSAKA 193 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +V+IIDTAGRLHN LM + K+ V+ ++ P VL VLD +TGQNA Q Sbjct: 194 NNAEVVIIDTAGRLHNKVNLMNELTKIRNVVSKIFPDIKPEVLLVLDGSTGQNAYEQARQ 253 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F T L +TK+DGTARGG +I I +IPV ++G+GEGI+D++ F ++F Sbjct: 254 FSQATNVTALAITKLDGTARGGVVIGISDQMQIPVKYIGLGEGIDDIQVFDKEEF 308 >gi|303229541|ref|ZP_07316329.1| signal recognition particle-docking protein FtsY [Veillonella atypica ACS-134-V-Col7a] gi|302515666|gb|EFL57620.1| signal recognition particle-docking protein FtsY [Veillonella atypica ACS-134-V-Col7a] Length = 311 Score = 212 bits (539), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 122/302 (40%), Positives = 180/302 (59%), Gaps = 9/302 (2%) Query: 10 SLSWIRKLTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 + + K+ +G T + + T II +DD ++LE +++ SD+G + +++ Sbjct: 2 AFGFFNKIKEGLEKTRKSFVKNVETVIIGYAEIDDDFLDDLEAVMLTSDLGPKTTEYLMK 61 Query: 69 ELLTKRYAKDVSVQR---VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 E+ +R + + V+ + + I +ML+ H P VILVVGVNGVGKT Sbjct: 62 EI--RRGVTEGVINNTGDVMPFMEDRITEMLVDQEDEI---ILHHPEVILVVGVNGVGKT 116 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T I KL+ + G KV++AAGDTFR+AA DQL IWADR V + G+D AA+ Y+A Sbjct: 117 TTIAKLANYYTKEGKKVIIAAGDTFRAAAADQLSIWADRVGVPIVKHKEGADPAAVVYDA 176 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + A+A+ D++I+DTAGRLH LM + KM RV APH L VLD TTGQNA Sbjct: 177 MEAAKARNADMVIVDTAGRLHTKVNLMEELKKMGRVANNHVEGAPHQTLLVLDGTTGQNA 236 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + Q ++F G+++TK+DGTA+GG +I I +PV ++GVGEG++DL PF AK+ Sbjct: 237 VSQAKLFGQAVPVNGIVVTKLDGTAKGGVVISIKEELGVPVRWIGVGEGMDDLRPFNAKE 296 Query: 306 FS 307 F+ Sbjct: 297 FA 298 >gi|325509166|gb|ADZ20802.1| Signal recognition particle GTPase, FtsY [Clostridium acetobutylicum EA 2018] Length = 303 Score = 212 bits (539), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 132/304 (43%), Positives = 188/304 (61%), Gaps = 18/304 (5%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 ++ KL G + T L I+D+++S +DD + +ELE++LI SDIGV + I+++L Sbjct: 4 NFFDKLKNGLSKTKNNLTSKISDVLTSTVTIDDDLYDELEEILITSDIGVETSLYIIDKL 63 Query: 71 ---LTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + + KD S+ + V+ D+ LMP P ILVVGVNGV Sbjct: 64 KEKIKENKVKDPSLVNDCLKEVIKDILGDKKGSLMP---------KQIPETILVVGVNGV 114 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGK+S ++ LKV++AA DTFR+AAIDQL++W+ R + D + + GSD AA+ Sbjct: 115 GKTTSIGKISSRLKSQNLKVIMAAADTFRAAAIDQLEVWSKRANVDIIKHQEGSDPAAVV 174 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+A+K DVLI DTAGRLHN LM + K+ R++ R + L VLDATTG Sbjct: 175 FDAIEAAKARKADVLICDTAGRLHNKKNLMNELEKINRIIDREFSQSTRRTLLVLDATTG 234 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q + F V G+++TK+DGTA+GG +I I IPV F+GVGEGI+DL+ F Sbjct: 235 QNAVIQAKQFMEVCKVDGIVLTKLDGTAKGGIVISIKHQLDIPVEFVGVGEGIDDLQEFN 294 Query: 303 AKDF 306 DF Sbjct: 295 PSDF 298 >gi|330818359|ref|YP_004362064.1| Signal recognition particle-docking protein FtsY [Burkholderia gladioli BSR3] gi|327370752|gb|AEA62108.1| Signal recognition particle-docking protein FtsY [Burkholderia gladioli BSR3] Length = 392 Score = 212 bits (539), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 129/302 (42%), Positives = 184/302 (60%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SWI +L G + TS L + S ++D+ + EELE L+ SD GV + ++ L Sbjct: 97 SWIARLRSGLSKTSSSLTS----VFVSTKIDEDLYEELETALLMSDAGVDATEYLLGALR 152 Query: 72 TKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K A+ ++ Q+V + L+ +L PL K + P V+++ GVNG GKTT IGK Sbjct: 153 EKVKAERLTDPQQVKAALRGLLIALLAPLEKSLMLGRAQ-PLVMMIAGVNGAGKTTSIGK 211 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + V+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+ Sbjct: 212 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVGAAR 270 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+K++V++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL QV+ Sbjct: 271 ARKINVVMADTAGRLPTQLHLMEELRKVKRVIGKAQADAPHEVLLVIDANTGQNALAQVK 330 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF A++F+ + Sbjct: 331 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFNAEEFTDAL 390 Query: 311 TG 312 G Sbjct: 391 LG 392 >gi|229031477|ref|ZP_04187477.1| Cell division protein ftsY [Bacillus cereus AH1271] gi|228729766|gb|EEL80746.1| Cell division protein ftsY [Bacillus cereus AH1271] Length = 329 Score = 212 bits (539), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 124/303 (40%), Positives = 189/303 (62%), Gaps = 6/303 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K++ ++ + K +G T + + D++ R++D+ EELE++LI +D+GV+ Sbjct: 9 EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVST 68 Query: 63 AQKIVEEL---LTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118 +++++L + +R +D VQ V+ + I+K S N + V+L VG Sbjct: 69 VMELIDQLKEEVQRRNIQDPKEVQAVISEKLVGIYKGDSEFSNEINMQ-EDQLTVVLFVG 127 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNGVGKTT IGKL+ K G V+LAAGDTFR+ AI+QL++W DR + + GSD Sbjct: 128 VNGVGKTTTIGKLAHKFKTEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSDP 187 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ Y+A + A+A+KVDVL+ DTAGRL N LM + K+ RV++R P APH VL V+D Sbjct: 188 AAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVID 247 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 ATTGQN L Q + F TG+++TK+DGTA+GG ++ I +PV F+G+GE ++DL Sbjct: 248 ATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDL 307 Query: 299 EPF 301 + F Sbjct: 308 QQF 310 >gi|77919948|ref|YP_357763.1| cell division membrane protein [Pelobacter carbinolicus DSM 2380] gi|77546031|gb|ABA89593.1| signal recognition particle-docking protein FtsY [Pelobacter carbinolicus DSM 2380] Length = 472 Score = 212 bits (539), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 116/249 (46%), Positives = 157/249 (63%), Gaps = 6/249 (2%) Query: 56 SDIGVAVAQKIVEEL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112 +D+G+ Q++++ L L K D V R + I LM S P + + P Sbjct: 213 ADLGMKTTQQLIQSLEMRLDKGQLNDPDVLR--EALKGEIRDRLMQESAPLDPQRAT-PF 269 Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 VI+VVGVNGVGKTT IGKL+ + G KV++ AGDTFR+AA +QL++W R + + Sbjct: 270 VIMVVGVNGVGKTTTIGKLAHQYVQQGKKVLVGAGDTFRAAAAEQLEVWGQRAGVEVIRQ 329 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 GSD AA+A++A K AQA+K DVL++DTAGRLH LM + K+ RVL R P APH Sbjct: 330 AAGSDPAAVAFDAIKAAQARKADVLLLDTAGRLHTKVNLMEELKKIRRVLDREMPGAPHE 389 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 L V+DATTGQNAL Q +F +GL +TK+DGTARGG L+ I +P++++G+G Sbjct: 390 TLLVVDATTGQNALVQARLFQEAVSVSGLALTKLDGTARGGMLVAIGGELGLPIHYVGIG 449 Query: 293 EGINDLEPF 301 EGI DL PF Sbjct: 450 EGIEDLRPF 458 >gi|225874949|ref|YP_002756408.1| signal recognition particle-docking protein FtsY [Acidobacterium capsulatum ATCC 51196] gi|225794105|gb|ACO34195.1| signal recognition particle-docking protein FtsY [Acidobacterium capsulatum ATCC 51196] Length = 324 Score = 212 bits (539), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 130/313 (41%), Positives = 188/313 (60%), Gaps = 15/313 (4%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 E + ++ + + T L + I +I+ +R +D+ EELE LI SD+GV VA ++V Sbjct: 13 EEKGFFDRMKQAVSRTRESLSDRIESVIAMTREVDEAALEELEMTLIASDLGVHVAAEVV 72 Query: 68 EELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 ++ +D + + + D +EL + K+L KP + P VI++VGVN Sbjct: 73 GQI------RDRAKREQIRDGAELRDLLKSSLKKILDEHQKPPRT-VATPPEVIVMVGVN 125 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT GKL+ G V+L A DTFR+AAI+QL++W +RT + + S G D +A Sbjct: 126 GTGKTTTTGKLAAYYRRQGKTVLLCAADTFRAAAIEQLEVWGERTGVELIKSRQGGDPSA 185 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++A + A+A++ DVLI+DTAGRLH S LMA + KM R +R P APH VL VLDAT Sbjct: 186 VLFDALQAAKARQTDVLIVDTAGRLHTKSGLMAELDKMRRTTQRFIPDAPHEVLLVLDAT 245 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQN L+Q +F AG TG+++TK+DGTA+GG I I +PV F G+GE +NDL P Sbjct: 246 TGQNGLQQARLFTESAGVTGIVLTKLDGTAKGGIAIAIAREMGVPVRFAGIGEQVNDLLP 305 Query: 301 FVAKDFSAVITGC 313 F + F + G Sbjct: 306 FDSDAFVEALLGS 318 >gi|317129236|ref|YP_004095518.1| signal recognition particle-docking protein FtsY [Bacillus cellulosilyticus DSM 2522] gi|315474184|gb|ADU30787.1| signal recognition particle-docking protein FtsY [Bacillus cellulosilyticus DSM 2522] Length = 332 Score = 212 bits (539), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 127/312 (40%), Positives = 187/312 (59%), Gaps = 15/312 (4%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K+ ++ S K G T + D++ + R++D+ EELED+LI +D+GV Sbjct: 9 EKITGQTESVTEKFKDGLTKTRDSFVGKMNDLVKNYRKVDEEFFEELEDILISADVGVHT 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYD-------VSELIHKMLMPLSKPFNWDFSHRP-HVI 114 +++EL KD + R + D +SE + ++L + + VI Sbjct: 69 VMDLIDEL------KDEAKSRKISDAVDIQPLISEKLAELLQKSEEETKLNMQDNGLTVI 122 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 L VGVNGVGKTT IGKL+ K G KV+LAAGDTFR+ AI+QL++W +R D + Sbjct: 123 LFVGVNGVGKTTTIGKLANKFKQEGKKVLLAAGDTFRAGAIEQLEVWGERVGVDVIKQHE 182 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 GSD AA+ Y+A + A++++ DVL+ DTAGRL N LM + K+ RV+ R P APH VL Sbjct: 183 GSDPAAVMYDAIQSAKSREADVLLCDTAGRLQNKVNLMNELEKVKRVITREIPDAPHEVL 242 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VLDATTGQNA+ Q + F +G+++TK+DGTA+GG ++ I IPV F+G+GEG Sbjct: 243 LVLDATTGQNAMSQAKTFGKATDVSGIVLTKLDGTAKGGIVLAIRHELDIPVKFVGLGEG 302 Query: 295 INDLEPFVAKDF 306 ++DL+ F A + Sbjct: 303 MDDLQEFQADQY 314 >gi|255970710|ref|ZP_05421296.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis T1] gi|255961728|gb|EET94204.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis T1] Length = 371 Score = 212 bits (539), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 119/261 (45%), Positives = 168/261 (64%), Gaps = 8/261 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109 LI +D+G + KI E L ++ K +V++ + +I KM+ + N + Sbjct: 102 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 159 Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P+ VIL VGVNGVGKTT IGKL+ + G KV++AA DTFR+ AIDQL +W +R S Sbjct: 160 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAS 219 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V G D AA+ ++A ++A+A++ DVL++DTAGRL N LM + K+ RV++R Sbjct: 220 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 279 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL V+DATTGQNA+ Q + F TGL++TK+DGTA+GG +I I +PV Sbjct: 280 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 339 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GEGINDLEPF A DF+ Sbjct: 340 KLVGLGEGINDLEPFNANDFA 360 >gi|332799150|ref|YP_004460649.1| signal recognition particle-docking protein FtsY [Tepidanaerobacter sp. Re1] gi|332696885|gb|AEE91342.1| signal recognition particle-docking protein FtsY [Tepidanaerobacter sp. Re1] Length = 297 Score = 212 bits (539), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 126/297 (42%), Positives = 190/297 (63%), Gaps = 7/297 (2%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +++I KL + + T E +I+ ++++D+ EELE+LLI +D+GV+ Q ++E+ Sbjct: 1 MAFIDKLKQSLSKTRESFSEKFDNILKFNKKIDEKTFEELEELLISADVGVSTTQMLIEK 60 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L K +K ++ L V + + ++ L N ++ P V+L+VGVNGVGKTT IG Sbjct: 61 L--KENSKKITAAEELKSV---LKEEIIDLFPKENISLTY-PTVMLIVGVNGVGKTTSIG 114 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KV+LAA DTFR+AAIDQL+IW R D + + G+D A++ ++A + Sbjct: 115 KLANIYKNQGKKVILAAADTFRAAAIDQLEIWGQRVGVDVIKHQEGADPASVLFDALQAG 174 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+K D++I DTAGRLH LM + K+ RV ++ P A L VLDATTGQNAL Q Sbjct: 175 KARKADLIICDTAGRLHTKKNLMEELKKLYRVCQKEYPQANVVSLIVLDATTGQNALIQA 234 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +MF +G+I+TK+DGTA+GG +I I IPV+++G+GEGINDL F ++DF Sbjct: 235 KMFKEAVDFSGIILTKLDGTAKGGIVIAIASELGIPVWYIGIGEGINDLHEFNSQDF 291 >gi|160946003|ref|ZP_02093229.1| hypothetical protein FAEPRAM212_03536 [Faecalibacterium prausnitzii M21/2] gi|158443734|gb|EDP20739.1| hypothetical protein FAEPRAM212_03536 [Faecalibacterium prausnitzii M21/2] gi|295103254|emb|CBL00798.1| signal recognition particle-docking protein FtsY [Faecalibacterium prausnitzii SL3/3] Length = 312 Score = 212 bits (539), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 121/292 (41%), Positives = 177/292 (60%), Gaps = 4/292 (1%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 K+ G T I + ++ +DD + ++LE+ LI +D+G VA +V++L + Sbjct: 13 KMKTGLEKTRTGFWGSIMNTLTGSVIDDEMYDDLEEQLILADVGGEVAVHLVDKLRDRVR 72 Query: 76 AKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K + D + ++I + + P ++ +P VILV+GVNGVGKTT I KL+ Sbjct: 73 DKGLKTGEQAADALRDIIAEEMTPEAE---MALDGKPAVILVIGVNGVGKTTSIAKLADY 129 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 + G +VMLAAGDTFR+AA +QL+IWA R V + G+D AA+ ++ K A A+ Sbjct: 130 YTRQGKRVMLAAGDTFRAAASEQLEIWASRAGVPIVSAGEGADPAAVIFDTVKSATARGY 189 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D++I DTAGRLHN S LMA + K+ R +K+ P A L VLDA TGQNA+ Q + F Sbjct: 190 DMVIADTAGRLHNKSNLMAELSKISRSVKKASPEASLETLLVLDAITGQNAISQAKEFCK 249 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 A TG+I+TK+DGTA+GG ++ + +PV F+GVGEGI+DL PF + F Sbjct: 250 AADATGIILTKLDGTAKGGCVVAVKQRLGLPVRFIGVGEGIDDLLPFTPEGF 301 >gi|312127773|ref|YP_003992647.1| signal recognition particle-docking protein ftsy [Caldicellulosiruptor hydrothermalis 108] gi|311777792|gb|ADQ07278.1| signal recognition particle-docking protein FtsY [Caldicellulosiruptor hydrothermalis 108] Length = 301 Score = 212 bits (539), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 126/299 (42%), Positives = 190/299 (63%), Gaps = 8/299 (2%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L +G + T E + ++ S +++DD + EELE++L+ SD+GV +QKI+E Sbjct: 1 MGFFDRLKEGLSKTKKNFTEKVESLLKSFKQVDDDLFEELEEILVLSDVGVKTSQKIIEN 60 Query: 70 LLTKRYAKDVSVQRVLYD--VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L + V +R+L V EL+ + ++ + N P +IL+VGVNGVGKTT Sbjct: 61 LKER-----VKKERILDPQVVKELLKEEMLNIINLENKLSERYPLIILMVGVNGVGKTTS 115 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGK++K + G KV++AA DTFR+AA +QL+IWA R D + G+D AA+ ++ + Sbjct: 116 IGKIAKLLKSNGKKVLIAAADTFRAAAAEQLEIWAKRVGCDIIKHVEGADPAAVVFDGIQ 175 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 +A+K DVLI+DTAGRLH L+ + K+ RV+ + P A L V+DATTGQNAL Sbjct: 176 AMRARKADVLIVDTAGRLHTKKNLIEELKKIDRVINQQMPEAAKETLLVIDATTGQNALV 235 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q + F+ +G+++TK+DGTA+GG +I I KIPV F+GVGE I+DL+ F AK+F Sbjct: 236 QAKEFNQAVNISGIVLTKLDGTAKGGIVISICDELKIPVKFVGVGEKIDDLQQFNAKEF 294 >gi|302343403|ref|YP_003807932.1| signal recognition particle-docking protein FtsY [Desulfarculus baarsii DSM 2075] gi|301640016|gb|ADK85338.1| signal recognition particle-docking protein FtsY [Desulfarculus baarsii DSM 2075] Length = 361 Score = 212 bits (539), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 129/302 (42%), Positives = 185/302 (61%), Gaps = 11/302 (3%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L + T K+ I I R++DD V +ELE++L+ +D+GV +++ L K Sbjct: 66 RLAERLGKTREKISGSIDKIAIGRKIDDEVLDELEEVLVTADLGVKTTAELIGGLRGKVR 125 Query: 76 AKDVSVQRVL-----YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K+++ L + E+ + P + + +PHVI+VVGVNGVGKTT IGK Sbjct: 126 RKELADAEALKGALRAGIEEIFGRTAAPPA------MTAKPHVIMVVGVNGVGKTTTIGK 179 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ +S G KVML A DTFR+AA +QL+IWA R V + G+D +A+AY+ + A Sbjct: 180 LASHLSAQGKKVMLGAADTFRAAAAEQLEIWAQRVGCPIVRQKEGADPSAVAYDTVEAAV 239 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + VDV IIDTAGRLH LM + K+ RV+ + APH V+ VLDATTGQNAL Q + Sbjct: 240 GRGVDVAIIDTAGRLHTKVNLMDELRKIHRVIGKKMDGAPHEVILVLDATTGQNALNQAK 299 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 MF+ TGLI+TK+DGTA+GG + I K+P+ ++GVGE ++DL PF A++F+ I Sbjct: 300 MFNEAVQLTGLILTKLDGTAKGGVAVAIAGELKLPICYVGVGEHLDDLRPFDAREFAEAI 359 Query: 311 TG 312 G Sbjct: 360 FG 361 >gi|297617462|ref|YP_003702621.1| signal recognition particle-docking protein FtsY [Syntrophothermus lipocalidus DSM 12680] gi|297145299|gb|ADI02056.1| signal recognition particle-docking protein FtsY [Syntrophothermus lipocalidus DSM 12680] Length = 361 Score = 212 bits (539), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 137/303 (45%), Positives = 198/303 (65%), Gaps = 9/303 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L K A T + E + +I +SRR+DD EELE++LI++D+GV+ A ++++ L Sbjct: 60 FFARLKKSLAKTRQNITEKVERLIKTSRRIDDEFFEELEEILIQADVGVSTAMELIDNL- 118 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSK----PFNWDFSHRPHVILVVGVNGVGKTTV 127 +R K + V +V LI + ++ + + P N P VI+VVGVNGVGKTT Sbjct: 119 -RRAVKQKKITEV-DEVRGLIKQEVVSIMEGSDAPLN-KAPEGPTVIMVVGVNGVGKTTT 175 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ + G KV++AA DTFR+AAIDQL+IWA+R AD + + G+D A+ ++A Sbjct: 176 IGKLAYRFKREGKKVIIAAADTFRAAAIDQLQIWAERVGADLIKHQEGADPGAVVFDAVN 235 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 AQA++ DVLI+DTAGRLH + LM I K+ RV++R APH VL VLDATTGQNA+ Sbjct: 236 AAQARRADVLIVDTAGRLHTKTNLMEEIAKVKRVIQRTYADAPHEVLLVLDATTGQNAIS 295 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 Q +F V G TG+++TK+DGTA+GG +I I IPV +G+GEG+ DL F A++F+ Sbjct: 296 QANLFKQVTGVTGIVLTKLDGTAKGGIVIAIAKELDIPVKLVGIGEGLEDLRDFSAEEFA 355 Query: 308 AVI 310 + Sbjct: 356 EAL 358 >gi|187477074|ref|YP_785098.1| cell division protein [Bordetella avium 197N] gi|115421660|emb|CAJ48170.1| cell division protein [Bordetella avium 197N] Length = 336 Score = 212 bits (539), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 119/304 (39%), Positives = 180/304 (59%), Gaps = 11/304 (3%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW+ +L +G A T + I I ++D+ + EELE LI +D G+ K++ L Sbjct: 36 SWLSRLKQGLARTG----QSIGGIFVGVKVDENLFEELESALIMADAGIEATDKLLTALR 91 Query: 72 TKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + + + +V + +L+ L PL + F+ + P V+++ GVNG GKTT IGK Sbjct: 92 ARVKKERIEDPAQVKAALRQLLADHLKPLERQFDLKRAQ-PLVVMIAGVNGAGKTTSIGK 150 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ G V+LAAGDTFR+AA +QL W R + + + G D AA+A++A + Sbjct: 151 LAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVIAQD-GGDPAAVAFDAVNAGR 209 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ V++IDTAGRL LM + K+ RV+ + D APH VL V+D TGQNAL Q+ Sbjct: 210 ARAAGVVMIDTAGRLPTQLHLMEELKKIRRVIGKADAAAPHEVLLVIDGNTGQNALAQIR 269 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK----IPVYFLGVGEGINDLEPFVAKDF 306 F A TGL++TK+DGTA+GG L + + +PVY++GVGEG+ DL+PFVA++F Sbjct: 270 AFDAAIQLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPVPVYWIGVGEGLEDLQPFVAEEF 329 Query: 307 SAVI 310 ++ + Sbjct: 330 ASAL 333 >gi|229013030|ref|ZP_04170195.1| Cell division protein ftsY [Bacillus mycoides DSM 2048] gi|228748284|gb|EEL98144.1| Cell division protein ftsY [Bacillus mycoides DSM 2048] Length = 332 Score = 212 bits (539), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 121/306 (39%), Positives = 193/306 (63%), Gaps = 12/306 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K++ ++ + K +G T + + +++ R++D+ EELE++LI +D+GV+ Sbjct: 12 EKISKQTDTVTEKFKQGLEKTRNSFADKVNELVYRYRKIDEDFFEELEEILISADVGVST 71 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115 +++++L + +++ + +V +I + L+ + K + DFS+ + V+L Sbjct: 72 VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLVGIYKG-DSDFSNEVNIQEDQLTVVL 127 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGKL+ K G V+LAAGDTFR+ AI+QL++W DR + + G Sbjct: 128 FVGVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 187 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ Y+A + A+A+KVDVL+ DTAGRL N LM + K+ RV++R P APH VL Sbjct: 188 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMNELEKVKRVIEREVPGAPHEVLL 247 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DATTGQN L Q + F TG+++TK+DGTA+GG ++ I +PV F+G+GE + Sbjct: 248 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 307 Query: 296 NDLEPF 301 +DL+ F Sbjct: 308 DDLQQF 313 >gi|78355607|ref|YP_387056.1| signal recognition particle-docking protein FtsY [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218012|gb|ABB37361.1| signal recognition particle-docking protein FtsY [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 506 Score = 211 bits (538), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 120/300 (40%), Positives = 183/300 (61%), Gaps = 5/300 (1%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 KL++G T ++ I ++S+ +++D+ EELE++LI +D+G A ++V L + Sbjct: 209 KLSEGLTRTKEQITRRIDGLLSAHKQIDEAFWEELEEILIMADVGYEPAMELVGRLRARV 268 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 A S L+ EL+ + L + + P + P V+L+VGVNGVGKTT I KL+ Sbjct: 269 RASG-SDDPALF--KELMREELEDIFRTPRRIAAINPPEVVLMVGVNGVGKTTTIAKLAY 325 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 + G KV++AAGDTFR+AAI+QLK+WADR A F +D AA+AYEA +A + Sbjct: 326 RARLQGKKVLIAAGDTFRAAAIEQLKVWADRVGAGFHSKGANADPAAVAYEAMDKAVKEG 385 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 D+L +DTAGR+H LM + K+ VL + P APH + V+DATTGQNAL Q +F Sbjct: 386 YDILFVDTAGRIHTKVNLMEELQKIRGVLGKKHPGAPHRSILVIDATTGQNALSQTRLFD 445 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 +++TK+DGTA+GG ++ + + IP+ ++G+GE + DL PF +DF+ + G Sbjct: 446 ESCKLDEIVLTKLDGTAKGGIVVAVAMQFGIPITYVGLGEKMEDLRPFDGRDFAQALLGS 505 >gi|256958375|ref|ZP_05562546.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis DS5] gi|257078314|ref|ZP_05572675.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis JH1] gi|256948871|gb|EEU65503.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis DS5] gi|256986344|gb|EEU73646.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis JH1] Length = 331 Score = 211 bits (538), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 119/261 (45%), Positives = 168/261 (64%), Gaps = 8/261 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109 LI +D+G + KI E L ++ K +V++ + +I KM+ + N + Sbjct: 62 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 119 Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P+ VIL VGVNGVGKTT IGKL+ + G KV++AA DTFR+ AIDQL +W +R S Sbjct: 120 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAS 179 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V G D AA+ ++A ++A+A++ DVL++DTAGRL N LM + K+ RV++R Sbjct: 180 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 239 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL V+DATTGQNA+ Q + F TGL++TK+DGTA+GG +I I +PV Sbjct: 240 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 299 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GEGINDLEPF A DF+ Sbjct: 300 KLVGLGEGINDLEPFNANDFA 320 >gi|229086400|ref|ZP_04218576.1| Cell division protein ftsY [Bacillus cereus Rock3-44] gi|228696916|gb|EEL49725.1| Cell division protein ftsY [Bacillus cereus Rock3-44] Length = 329 Score = 211 bits (538), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 124/303 (40%), Positives = 189/303 (62%), Gaps = 6/303 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAV 62 +K++ ++ + K +G T + + D++ R++D+ EELE++LI +D+GVA Sbjct: 9 EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVFRYRKVDEDFFEELEEILIGADVGVAT 68 Query: 63 AQKIVEEL---LTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118 +++++L + +R +D VQ V+ + I+K S N + VIL VG Sbjct: 69 VMELIDQLKEEVQRRNIQDPKEVQAVISEKLVGIYKGDEKFSNEINMQ-QDQLTVILFVG 127 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNGVGKTT IGK++ K G V+LAAGDTFR+ AI+QL++W DR + + GSD Sbjct: 128 VNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSDP 187 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ Y+A + A+A+KVDVL+ DTAGRL N LM + K+ RV++R P APH VL V+D Sbjct: 188 AAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVID 247 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 ATTGQN L Q + F +G+++TK+DGTA+GG ++ I +PV F+G+GE ++DL Sbjct: 248 ATTGQNGLSQAKTFREATNVSGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDL 307 Query: 299 EPF 301 + F Sbjct: 308 QQF 310 >gi|42782939|ref|NP_980186.1| signal recognition particle-docking protein FtsY [Bacillus cereus ATCC 10987] gi|42738866|gb|AAS42794.1| signal recognition particle-docking protein FtsY [Bacillus cereus ATCC 10987] Length = 329 Score = 211 bits (538), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 120/306 (39%), Positives = 193/306 (63%), Gaps = 12/306 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAV 62 +K++ ++ + K +G T + + D++ R++D+ EELE++LI +D+GV+ Sbjct: 9 EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVFRYRKVDEDFFEELEEILIGADVGVST 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-------IL 115 +++++L + +++ + +V +I + L+ + K + DF++ +V +L Sbjct: 69 VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLIEIYKG-DSDFTNEINVQKDGLTVVL 124 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGK++ K G V+LAAGDTFR+ AI+QL++W DR + + G Sbjct: 125 FVGVNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ Y+A + A+A+KVDVL+ DTAGRL N LM + K+ RV++R P APH VL Sbjct: 185 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DATTGQN L Q + F TG+++TK+DGTA+GG ++ I +PV F+G+GE + Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304 Query: 296 NDLEPF 301 +DL+ F Sbjct: 305 DDLQQF 310 >gi|315171220|gb|EFU15237.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX1342] Length = 442 Score = 211 bits (538), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109 LI +D+G + KI E L ++ K +V++ + +I KM+ + N + Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKTAQVQNTIIEKMVDLYEEAGINENNAINL 230 Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P+ VIL VGVNGVGKTT IGKL+ + G KV++AA DTFR+ AIDQL +W +R Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKVEGKKVLMAAADTFRAGAIDQLVVWGERAG 290 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V G D AA+ ++A ++A+A++ DVL++DTAGRL N LM + K+ RV++R Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL V+DATTGQNA+ Q + F TGL++TK+DGTA+GG +I I +PV Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GEGINDLEPF A DF+ Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431 >gi|217961267|ref|YP_002339835.1| signal recognition particle-docking protein FtsY [Bacillus cereus AH187] gi|222097292|ref|YP_002531349.1| signal recognition particle-docking protein ftsy [Bacillus cereus Q1] gi|217065005|gb|ACJ79255.1| signal recognition particle-docking protein FtsY [Bacillus cereus AH187] gi|221241350|gb|ACM14060.1| signal recognition particle-docking protein FtsY [Bacillus cereus Q1] gi|324327744|gb|ADY23004.1| signal recognition particle-docking protein FtsY [Bacillus thuringiensis serovar finitimus YBT-020] Length = 329 Score = 211 bits (538), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 120/306 (39%), Positives = 193/306 (63%), Gaps = 12/306 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAV 62 +K++ ++ + K +G T + + D++ R++D+ EELE++LI +D+GV+ Sbjct: 9 EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVFRYRKVDEDFFEELEEILIGADVGVST 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115 +++++L + +++ + +V +I + L+ + K + DF++ + V+L Sbjct: 69 VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLIEIYKG-DSDFTNEINEQKDGLTVVL 124 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGK++ K G V+LAAGDTFR+ AI+QL++W DR + + G Sbjct: 125 FVGVNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ Y+A + A+A+KVDVL+ DTAGRL N LM + K+ RV++R P APH VL Sbjct: 185 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DATTGQN L Q + F TG+++TK+DGTA+GG ++ I +PV F+G+GE + Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304 Query: 296 NDLEPF 301 +DL+ F Sbjct: 305 DDLQQF 310 >gi|218899000|ref|YP_002447411.1| signal recognition particle-docking protein FtsY [Bacillus cereus G9842] gi|228902350|ref|ZP_04066507.1| Cell division protein ftsY [Bacillus thuringiensis IBL 4222] gi|228966793|ref|ZP_04127837.1| Cell division protein ftsY [Bacillus thuringiensis serovar sotto str. T04001] gi|218543677|gb|ACK96071.1| signal recognition particle-docking protein FtsY [Bacillus cereus G9842] gi|228792892|gb|EEM40450.1| Cell division protein ftsY [Bacillus thuringiensis serovar sotto str. T04001] gi|228857319|gb|EEN01822.1| Cell division protein ftsY [Bacillus thuringiensis IBL 4222] Length = 329 Score = 211 bits (538), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 192/306 (62%), Gaps = 12/306 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K++ ++ + K G T + + D++ R++D+ EELE++LI +D+GVA Sbjct: 9 EKISKQTDTVTEKFKHGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVAT 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115 +++++L + +++ + +V +I + L+ + K + DFS+ + V+L Sbjct: 69 VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLVGIYKG-DSDFSNEINMQEDQLTVVL 124 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGKL+ K G V+LAAGDTFR+ AI+QL++W DR + + G Sbjct: 125 FVGVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ Y+A + A+A+KVDVL+ DTAGRL N LM + K+ RV++R P APH VL Sbjct: 185 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DATTGQN L Q + F TG+++TK+DGTA+GG ++ I +PV F+G+GE + Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEIDVPVKFVGLGEQM 304 Query: 296 NDLEPF 301 +DL+ F Sbjct: 305 DDLQQF 310 >gi|28378331|ref|NP_785223.1| signal recognition particle receptor FtsY [Lactobacillus plantarum WCFS1] gi|28271166|emb|CAD64071.1| signal recognition particle receptor FtsY [Lactobacillus plantarum WCFS1] Length = 515 Score = 211 bits (538), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 119/274 (43%), Positives = 165/274 (60%), Gaps = 8/274 (2%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-M 97 R +D+ ++LED LI SD+G A +I +EL + K+ ++ + V ++ K++ M Sbjct: 233 RHVDEAFFDDLEDTLIESDVGYETAMRISDELRDEVKLKNAKSKKEISSV--IVEKLVDM 290 Query: 98 PLSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 D S P VIL VGVNG GKTT IGK++ G KV+LAA DTFR+ Sbjct: 291 YGEAGEGEDNSIHMAKSGPTVILFVGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRA 350 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AI QL++W R D V SD AA+ ++A K+A+A+ DVL +DTAGRL N LM Sbjct: 351 GAIQQLQVWGQRDGVDVVAKAEKSDPAAVCFDAVKKAKAEDYDVLFVDTAGRLQNKVNLM 410 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + K+ RV+ R P APH VL VLDATTGQNAL Q ++F +G+++TK+DGTARG Sbjct: 411 NELEKIKRVITREIPDAPHEVLLVLDATTGQNALNQAKLFKQSTDVSGIVLTKLDGTARG 470 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G ++ I + V ++G+GE + DL PF A DF Sbjct: 471 GIVLAIRNELHLAVKYVGLGEKVTDLRPFNANDF 504 >gi|193214940|ref|YP_001996139.1| signal recognition particle-docking protein FtsY [Chloroherpeton thalassium ATCC 35110] gi|193088417|gb|ACF13692.1| signal recognition particle-docking protein FtsY [Chloroherpeton thalassium ATCC 35110] Length = 313 Score = 211 bits (538), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 132/302 (43%), Positives = 184/302 (60%), Gaps = 12/302 (3%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVA----VAQKIVE 68 I +L +G A T +K IT ++ R +DD EELE +LI +D+GV + KI E Sbjct: 9 ISRLKEGLAKTRENIKTKITKLVKGRTEIDDEFLEELEQILISADVGVQTTLDIVDKITE 68 Query: 69 ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGK 124 +RYA + + +L D I KML DF P+VIL+VGVNGVGK Sbjct: 69 RAKNERYASEEDLNNMLIDE---IQKMLSDARDAHVVDFDAPLPSTPYVILIVGVNGVGK 125 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGK++ AG KV++AA DTFR+AA +QL+IWA+R V G+D A++ ++ Sbjct: 126 TTSIGKMAYNYKTAGKKVLIAAADTFRAAATEQLEIWAERAGVPIVGQRQGADPASVVFD 185 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 + A ++ +DV+++DTAGRLHN LM + K++RV ++ P APH VL VLDA+TGQN Sbjct: 186 SVSSAVSRDMDVVLVDTAGRLHNKIHLMEELSKIMRVAQKKVPDAPHEVLLVLDASTGQN 245 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ Q + F TGLI+TK+DGTA+GG +I I IPV ++GVGE I DL+ F + Sbjct: 246 AINQAKEFMKSVKVTGLILTKLDGTAKGGVVIGISRELNIPVKYIGVGEKIEDLQIFDRQ 305 Query: 305 DF 306 F Sbjct: 306 KF 307 >gi|55821418|ref|YP_139860.1| signal recognition particle receptor (docking protein) [Streptococcus thermophilus LMG 18311] gi|55823343|ref|YP_141784.1| signal recognition particle receptor [Streptococcus thermophilus CNRZ1066] gi|55737403|gb|AAV61045.1| signal recognition particle receptor (docking protein) [Streptococcus thermophilus LMG 18311] gi|55739328|gb|AAV62969.1| signal recognition particle receptor (docking protein) [Streptococcus thermophilus CNRZ1066] Length = 463 Score = 211 bits (538), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 125/320 (39%), Positives = 187/320 (58%), Gaps = 12/320 (3%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 + + K +E + R L K + +L E + RR+D+ E+LE++LI SD+GV Sbjct: 150 LPDSKTETEQEKYNRTLKKTRTGFAARLNEFFANF---RRVDEEFFEQLEEMLILSDVGV 206 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPHVIL 115 VA ++ E+L RY + + D+ LI + L+ + + + +F VIL Sbjct: 207 NVATQLTEDL---RYEARLENVKKTEDLQRLIIEKLVDIYEKDDVYEEQINFQDGLTVIL 263 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGKL+ K G VML A DTFR+ A+ QL W R V Sbjct: 264 FVGVNGVGKTTSIGKLANKYKQEGKNVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGAEK 323 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 +D A++ ++ ++A A+ VDVL+IDTAGRL N LMA + K+ R++KR+ P APH L Sbjct: 324 ADPASVVFDGMEKALAEGVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETLL 383 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 LDA+TGQNAL Q + F + TGL++TK+DG+A+GG ++ I IPV +G GE I Sbjct: 384 ALDASTGQNALNQAKEFSKITPLTGLVLTKLDGSAKGGVVLAIRQELDIPVKLIGFGEKI 443 Query: 296 NDLEPFVAKDF-SAVITGCL 314 +D+ F +++F +++TG + Sbjct: 444 DDIGEFHSEEFMQSLLTGLV 463 >gi|241895652|ref|ZP_04782948.1| signal recognition particle-docking protein FtsY [Weissella paramesenteroides ATCC 33313] gi|241871230|gb|EER74981.1| signal recognition particle-docking protein FtsY [Weissella paramesenteroides ATCC 33313] Length = 351 Score = 211 bits (538), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 117/283 (41%), Positives = 174/283 (61%), Gaps = 10/283 (3%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R +D+ ++LE+ LI +D+G A ++ +EL + ++ ++ DVS++I L+ Sbjct: 67 RSVDEDFFDDLEETLIGADVGAQTAMQLTDELRDEVKLQNAKSKQ---DVSKVIVDKLVD 123 Query: 99 L--SKPFNWDFSHR-----PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 L S+ N D S P VIL+VGVNGVGKTT IGKLS +AG KV+LAA DTFR Sbjct: 124 LYRSQGVNEDASMHFAPEGPTVILLVGVNGVGKTTTIGKLSAYYKNAGKKVVLAAADTFR 183 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 + A +QL W +R V +D A++ ++ K A + D+L +DTAGRL NN L Sbjct: 184 AGATEQLVAWGERNDIPVVTGSSKADPASVVFDGVKTAIDTQADILFVDTAGRLQNNVNL 243 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M + KM R++ R P+ P VL LDATTGQNA++Q ++F TG+++TK+DGTA+ Sbjct: 244 MQELSKMKRIITRELPNEPQEVLLTLDATTGQNAVQQAKLFKDSTDVTGIVLTKLDGTAK 303 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 GG ++PI +PV ++G+GE + D++PF A DF+ + G L Sbjct: 304 GGIILPIRNELHLPVKWVGLGEKVTDIQPFEANDFAKSLFGSL 346 >gi|149925749|ref|ZP_01914013.1| signal recognition particle-docking protein FtsY(cell division protein) [Limnobacter sp. MED105] gi|149825866|gb|EDM85074.1| signal recognition particle-docking protein FtsY(cell division protein) [Limnobacter sp. MED105] Length = 313 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 113/312 (36%), Positives = 191/312 (61%), Gaps = 13/312 (4%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 ++ + W+ +L G T + G+T + + ++D+ EE+E+ L+ +D G+ + Sbjct: 2 QIPGQRQDWLGRLKSGLTKT----RSGLTSMFTGEKVDEAFFEEMEERLLLADCGLPATE 57 Query: 65 KIVEELLTKRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 +++++ Y K ++ V+ VL D + +L PL D + RP +++VVGVN Sbjct: 58 LLMQKVRDTVYQKGLTRPEDVRLVLRDA---VFDLLRPLETSMGVDRA-RPLIMMVVGVN 113 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+ ++ G V+LAAGDTFR+AA +QL +WA R++ D + +E GSD A Sbjct: 114 GAGKTTSIGKLANHYAEIGYSVLLAAGDTFRAAAREQLDVWAQRSNVDVISAE-GSDPGA 172 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 +A+++ + ++ ++I DTAGRL LM + K+ +VL + APH ++ V+DAT Sbjct: 173 VAFDSVQAGISRNKHIVICDTAGRLPTQLHLMEELKKIKKVLGKAKMDAPHEIVLVVDAT 232 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQNAL+Q++ F+ T L++TK+DGTA+GG L + ++ ++PV F+GVGE + DL P Sbjct: 233 NGQNALQQIKAFNDALTLTALVVTKLDGTAKGGILAAMSMSTRVPVAFIGVGEKMGDLRP 292 Query: 301 FVAKDFSAVITG 312 F ++F+ + G Sbjct: 293 FSPREFANALVG 304 >gi|326204789|ref|ZP_08194643.1| signal recognition particle-docking protein FtsY [Clostridium papyrosolvens DSM 2782] gi|325985001|gb|EGD45843.1| signal recognition particle-docking protein FtsY [Clostridium papyrosolvens DSM 2782] Length = 302 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 128/301 (42%), Positives = 191/301 (63%), Gaps = 10/301 (3%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + KL +G T + E I + +S ++D+ + +ELE++LI SDIG+ K++E+ Sbjct: 1 MGFFDKLKEGLQKTRKSITEKIDQVLVSFGKVDEELFDELEEILITSDIGIETTMKVIED 60 Query: 70 LLTKRYAKDVSVQRVL--YDVSELIHKMLMP-LSKPFN-WDFSHRPHVILVVGVNGVGKT 125 L K KD ++++ DV L+ + L L K N + + +P VI+V+GVNGVGKT Sbjct: 61 L--KEKVKD---RKIIDPKDVKGLLKETLKEILEKGGNEMNLNTKPSVIIVIGVNGVGKT 115 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGK++ G KV+LAAGDTFR+AAIDQL++WA R + + + GSD AA+ ++A Sbjct: 116 TSIGKIANLYKSQGKKVLLAAGDTFRAAAIDQLEVWAQRVGTEIIMQKEGSDPAAVIFDA 175 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + A+++ D+LI DTAGRLH LM + K+ RVL+R P A L VLDATTGQNA Sbjct: 176 VQAAKSRNADLLICDTAGRLHTKKNLMEELKKVSRVLERELPGADRETLLVLDATTGQNA 235 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + Q + F + TG+++TK+DGTA+GG ++ I IPV +GVGE ++DL+ F A + Sbjct: 236 IAQAKTFSETSDITGIVLTKLDGTAKGGIVVAIKSELDIPVKLIGVGEQLDDLQKFDAGE 295 Query: 306 F 306 F Sbjct: 296 F 296 >gi|329769857|ref|ZP_08261256.1| hypothetical protein HMPREF0433_01020 [Gemella sanguinis M325] gi|328837911|gb|EGF87535.1| hypothetical protein HMPREF0433_01020 [Gemella sanguinis M325] Length = 357 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 128/303 (42%), Positives = 183/303 (60%), Gaps = 16/303 (5%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67 ES K KG + + ++ISS R +++ E+LE+LLI+SD+ ++V Sbjct: 33 ESQFVTEKFKKGLKKSRDNFSNALNNLISSYREINEEFFEDLEELLIQSDVSYNTVLELV 92 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF---------NWDFSHRPHVILVVG 118 + Y K+ S ++ L + SEL ++ L + + N+ + L VG Sbjct: 93 D------YLKEESQRQNLKEPSELQDMIIDKLVEVYMEGTVKSELNYAPDKELSIFLFVG 146 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNGVGKTT IGKL+ + G KV++AAGDTFR+ AIDQL +WA R+ AD V S G+D+ Sbjct: 147 VNGVGKTTSIGKLAHNLKKEGKKVLIAAGDTFRAGAIDQLDVWAKRSGADIVKSHEGADS 206 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A + A+AK DVL+ DTAGRL N LM + K++RV+KR P PH VL +D Sbjct: 207 AAIIFDAIQSAKAKGYDVLLCDTAGRLQNKDHLMKELEKIVRVIKREVPEGPHEVLLTID 266 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 ATTGQN + Q + F V+ TG+I+TK+DGTA+GG +I I IPV +G+GE I+DL Sbjct: 267 ATTGQNGILQAKTFKEVSDVTGVILTKLDGTAKGGIVIAIKKELDIPVKLVGLGENIDDL 326 Query: 299 EPF 301 E F Sbjct: 327 EVF 329 >gi|30263850|ref|NP_846227.1| signal recognition particle-docking protein FtsY [Bacillus anthracis str. Ames] gi|47529275|ref|YP_020624.1| signal recognition particle-docking protein FtsY [Bacillus anthracis str. 'Ames Ancestor'] gi|49186697|ref|YP_029949.1| signal recognition particle-docking protein FtsY [Bacillus anthracis str. Sterne] gi|49478413|ref|YP_037908.1| recognition particle-docking protein FtsY [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65321175|ref|ZP_00394134.1| COG0552: Signal recognition particle GTPase [Bacillus anthracis str. A2012] gi|165873287|ref|ZP_02217895.1| signal recognition particle-docking protein FtsY [Bacillus anthracis str. A0488] gi|167636667|ref|ZP_02394957.1| signal recognition particle-docking protein FtsY [Bacillus anthracis str. A0442] gi|170689653|ref|ZP_02880834.1| signal recognition particle-docking protein FtsY [Bacillus anthracis str. A0465] gi|190565956|ref|ZP_03018875.1| signal recognition particle-docking protein FtsY [Bacillus anthracis Tsiankovskii-I] gi|196035825|ref|ZP_03103227.1| signal recognition particle-docking protein FtsY [Bacillus cereus W] gi|218904977|ref|YP_002452811.1| signal recognition particle-docking protein FtsY [Bacillus cereus AH820] gi|227813245|ref|YP_002813254.1| signal recognition particle-docking protein FtsY [Bacillus anthracis str. CDC 684] gi|228928895|ref|ZP_04091927.1| Cell division protein ftsY [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935161|ref|ZP_04097988.1| Cell division protein ftsY [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229601511|ref|YP_002868084.1| signal recognition particle-docking protein FtsY [Bacillus anthracis str. A0248] gi|254683445|ref|ZP_05147305.1| signal recognition particle-docking protein FtsY [Bacillus anthracis str. CNEVA-9066] gi|254721378|ref|ZP_05183167.1| signal recognition particle-docking protein FtsY [Bacillus anthracis str. A1055] gi|254735885|ref|ZP_05193591.1| signal recognition particle-docking protein FtsY [Bacillus anthracis str. Western North America USA6153] gi|254739518|ref|ZP_05197215.1| signal recognition particle-docking protein FtsY [Bacillus anthracis str. Kruger B] gi|254751174|ref|ZP_05203213.1| signal recognition particle-docking protein FtsY [Bacillus anthracis str. Vollum] gi|254756722|ref|ZP_05208751.1| signal recognition particle-docking protein FtsY [Bacillus anthracis str. Australia 94] gi|30258494|gb|AAP27713.1| signal recognition particle-docking protein FtsY [Bacillus anthracis str. Ames] gi|47504423|gb|AAT33099.1| signal recognition particle-docking protein FtsY [Bacillus anthracis str. 'Ames Ancestor'] gi|49180624|gb|AAT56000.1| signal recognition particle-docking protein FtsY [Bacillus anthracis str. Sterne] gi|49329969|gb|AAT60615.1| recognition particle-docking protein FtsY [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164710972|gb|EDR16541.1| signal recognition particle-docking protein FtsY [Bacillus anthracis str. A0488] gi|167527918|gb|EDR90734.1| signal recognition particle-docking protein FtsY [Bacillus anthracis str. A0442] gi|170666398|gb|EDT17180.1| signal recognition particle-docking protein FtsY [Bacillus anthracis str. A0465] gi|190562875|gb|EDV16841.1| signal recognition particle-docking protein FtsY [Bacillus anthracis Tsiankovskii-I] gi|195991474|gb|EDX55440.1| signal recognition particle-docking protein FtsY [Bacillus cereus W] gi|218540047|gb|ACK92445.1| signal recognition particle-docking protein FtsY [Bacillus cereus AH820] gi|227002741|gb|ACP12484.1| signal recognition particle-docking protein FtsY [Bacillus anthracis str. CDC 684] gi|228824526|gb|EEM70331.1| Cell division protein ftsY [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830702|gb|EEM76307.1| Cell division protein ftsY [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229265919|gb|ACQ47556.1| signal recognition particle-docking protein FtsY [Bacillus anthracis str. A0248] Length = 329 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 120/306 (39%), Positives = 192/306 (62%), Gaps = 12/306 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAV 62 +K++ ++ + K +G T + + D++ R++D+ EELE++LI +D+GV+ Sbjct: 9 EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVFRYRKVDEDFFEELEEILIGADVGVST 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115 +++++L + +++ R +V +I + L+ + K + DF++ + V+L Sbjct: 69 VMELIDQLKEEVQRRNIQDPR---EVQAVISEKLIEIYKG-DSDFTNEVNMQKDGLTVVL 124 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGK++ K G V+LAAGDTFR+ AI+QL++W DR + + G Sbjct: 125 FVGVNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ Y+A + A+A+ VDVL+ DTAGRL N LM + K+ RV++R P APH VL Sbjct: 185 SDPAAVMYDAVQAAKARNVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DATTGQN L Q + F TG+++TK+DGTA+GG ++ I +PV F+G+GE + Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304 Query: 296 NDLEPF 301 +DL+ F Sbjct: 305 DDLQQF 310 >gi|255524260|ref|ZP_05391219.1| signal recognition particle-docking protein FtsY [Clostridium carboxidivorans P7] gi|296185382|ref|ZP_06853792.1| signal recognition particle-docking protein FtsY [Clostridium carboxidivorans P7] gi|255512085|gb|EET88366.1| signal recognition particle-docking protein FtsY [Clostridium carboxidivorans P7] gi|296050216|gb|EFG89640.1| signal recognition particle-docking protein FtsY [Clostridium carboxidivorans P7] Length = 303 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 135/282 (47%), Positives = 186/282 (65%), Gaps = 10/282 (3%) Query: 30 EGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD- 87 E ITD++S + +DD + EELE++LI +DIGV I+E+L K K + ++ D Sbjct: 22 EKITDMLSGAMTIDDDLYEELEEILITADIGVDTTLYIIEKLKEKIREKKIKDPSLVSDC 81 Query: 88 VSELIHKMLMPLS---KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 + E+I +L S KP + P VILV+GVNGVGKTT IGK+S K+ + G KV++ Sbjct: 82 LKEVIVDILGEESSTIKP-----NKTPEVILVIGVNGVGKTTSIGKISAKLKNDGYKVLM 136 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 AA DTFR+AAIDQL++W+ R + D + + GSD AA+ ++A + A+A+K DVLI DTAGR Sbjct: 137 AAADTFRAAAIDQLEVWSSRAAVDIIKHQEGSDPAAVVFDAVQAAKARKTDVLICDTAGR 196 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 LHN LM +GK+ RV+ R A L VLDATTGQNA+ Q + F V G+I+T Sbjct: 197 LHNKKNLMDELGKINRVIDREFNEAERETLLVLDATTGQNAVEQAKQFMEVCPIGGIILT 256 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 K+DGTA+GG +I I + IPV +GVGEGI+DL+ F K+F Sbjct: 257 KLDGTAKGGIVISIKHSLNIPVKLVGVGEGIDDLQEFNPKEF 298 >gi|313632780|gb|EFR99743.1| signal recognition particle-docking protein FtsY [Listeria seeligeri FSL N1-067] Length = 328 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 128/310 (41%), Positives = 192/310 (61%), Gaps = 12/310 (3%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63 K+ ++ S K G + T I ++++ R++D+ EELE++LI +D+G Sbjct: 10 KITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFETV 69 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VILV 116 ++VE L + +++S + DV E+I + L+ + + + + H VIL Sbjct: 70 MELVEALRREVQLRNISDPK---DVQEVIVEKLVDIYQG-DQEEEETLHIEKDGLTVILF 125 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGK++ + G KVMLAAGDTFR+ AI+QL++W +RT D + GS Sbjct: 126 VGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIEQLEVWGERTGVDVIKQAEGS 185 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D AA+ ++A + A+A+K D+L+ DTAGRL N LM + K+ RV+ R P+APH VL V Sbjct: 186 DPAAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLLV 245 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDATTGQNA Q + F TG+I+TK+DGTA+GG +I I +IPV F+G+GE ++ Sbjct: 246 LDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELRIPVKFVGLGEQMD 305 Query: 297 DLEPFVAKDF 306 DL+ F A ++ Sbjct: 306 DLQAFDANEY 315 >gi|308180482|ref|YP_003924610.1| cell division protein FtsY [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045973|gb|ADN98516.1| cell division protein FtsY [Lactobacillus plantarum subsp. plantarum ST-III] Length = 515 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 119/274 (43%), Positives = 165/274 (60%), Gaps = 8/274 (2%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-M 97 R +D+ ++LED LI SD+G A +I +EL + K+ ++ + V ++ K++ M Sbjct: 233 RHVDEAFFDDLEDTLIESDVGYETAMRISDELRDEVKLKNAKSKKEISSV--IVEKLVDM 290 Query: 98 PLSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 D S P VIL VGVNG GKTT IGK++ G KV+LAA DTFR+ Sbjct: 291 YGEAGEGEDNSIHMAKSGPTVILFVGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRA 350 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AI QL++W R D V SD AA+ ++A K+A+A+ DVL +DTAGRL N LM Sbjct: 351 GAIQQLQVWGQRDGVDVVAKAEKSDPAAVCFDAVKKAKAEDYDVLFVDTAGRLQNKVNLM 410 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + K+ RV+ R P APH VL VLDATTGQNAL Q ++F +G+++TK+DGTARG Sbjct: 411 NELEKIKRVITREIPDAPHEVLLVLDATTGQNALNQAKLFKQSTDVSGIVLTKLDGTARG 470 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G ++ I + V ++G+GE + DL PF A DF Sbjct: 471 GIVLAIRNELHLAVKYVGLGEKVTDLRPFNANDF 504 >gi|71892395|ref|YP_278129.1| cell division protein [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796501|gb|AAZ41252.1| cell division protein [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 308 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 115/306 (37%), Positives = 188/306 (61%), Gaps = 5/306 (1%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 + + + +L + +T KL + I ++I ++R+D + +++++ L+ +DI + QKI+ Sbjct: 2 NRAYNLFNRLKQSLLNTRKKLGDNIIELIRNKRIDTVILDKIKNQLLIADINIHTTQKII 61 Query: 68 EELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 L ++ +D +E++ K++ + +P + +P +IL+VGVNGVGKT Sbjct: 62 NNLRNYISFNTNCNEQSFHDALRNEML-KIVTLIDRPL-FLQEKKPFIILMVGVNGVGKT 119 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAYE 184 T IGKL+ VMLAAGDT R+AA DQL+I R+ V ++ SD+A++ ++ Sbjct: 120 TTIGKLAHYYRLKNKTVMLAAGDTCRAAAADQLEILGKRSGCIAVITKNTTSDSASIVFD 179 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A K A+ K VD+LIIDTAGRL N M + K+IRV+ ++D APH + VLDA GQN Sbjct: 180 AVKIAKIKSVDLLIIDTAGRLQNKIYAMEELKKIIRVITKIDATAPHETMLVLDANIGQN 239 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 ++ QV MF+ TG++MTK+DG+A+GG L+ I IP+ ++G+G+ I+DL+PF + Sbjct: 240 SVNQVRMFNEAIKITGIVMTKLDGSAKGGTLLSIADHFSIPIRYIGIGQNIDDLQPFKSH 299 Query: 305 DFSAVI 310 +F I Sbjct: 300 NFVEAI 305 >gi|229174513|ref|ZP_04302045.1| Cell division protein ftsY [Bacillus cereus MM3] gi|228609073|gb|EEK66363.1| Cell division protein ftsY [Bacillus cereus MM3] Length = 329 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 124/303 (40%), Positives = 188/303 (62%), Gaps = 6/303 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K++ ++ + K G T + + D++ R++D+ EELE++LI +D+GV+ Sbjct: 9 EKISKQTDTVTEKFKHGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVST 68 Query: 63 AQKIVEEL---LTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118 +++++L + +R +D VQ V+ + I+K S N + V+L VG Sbjct: 69 VMELIDQLKEEVQRRNIQDPKEVQAVISEKLVGIYKGDSEFSNEINMQ-EDQLTVVLFVG 127 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNGVGKTT IGKL+ K G V+LAAGDTFR+ AI+QL++W DR + + GSD Sbjct: 128 VNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSDP 187 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ Y+A + A+A+KVDVL+ DTAGRL N LM + K+ RV++R P APH VL V+D Sbjct: 188 AAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVID 247 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 ATTGQN L Q + F TG+++TK+DGTA+GG ++ I +PV F+G+GE ++DL Sbjct: 248 ATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDL 307 Query: 299 EPF 301 + F Sbjct: 308 QQF 310 >gi|116628140|ref|YP_820759.1| signal recognition particle receptor (docking protein) [Streptococcus thermophilus LMD-9] gi|116101417|gb|ABJ66563.1| signal recognition particle-docking protein FtsY [Streptococcus thermophilus LMD-9] Length = 463 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 125/320 (39%), Positives = 187/320 (58%), Gaps = 12/320 (3%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 + + K +E + R L K + +L E + RR+D+ E+LE++LI SD+GV Sbjct: 150 LPDSKTETEQEKYNRTLKKTRTGFAARLNEFFANF---RRVDEEFFEQLEEILILSDVGV 206 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPHVIL 115 VA ++ E+L RY + + D+ LI + L+ + + + +F VIL Sbjct: 207 NVATQLTEDL---RYEARLENVKKTEDLQRLIIEKLVDIYEKDDVYEEQINFQDGLTVIL 263 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGKL+ K G VML A DTFR+ A+ QL W R V Sbjct: 264 FVGVNGVGKTTSIGKLANKYKQEGKNVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGAEK 323 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 +D A++ ++ ++A A+ VDVL+IDTAGRL N LMA + K+ R++KR+ P APH L Sbjct: 324 ADPASVVFDGMEKALAEGVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETLL 383 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 LDA+TGQNAL Q + F + TGL++TK+DG+A+GG ++ I IPV +G GE I Sbjct: 384 ALDASTGQNALNQAKEFSKITPLTGLVLTKLDGSAKGGVVLAIRQELDIPVKLIGFGEKI 443 Query: 296 NDLEPFVAKDF-SAVITGCL 314 +D+ F +++F +++TG + Sbjct: 444 DDIGEFHSEEFMQSLLTGLV 463 >gi|296331170|ref|ZP_06873644.1| signal recognition particle-docking protein FtsY [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674326|ref|YP_003865998.1| signal recognition particle (docking protein) [Bacillus subtilis subsp. spizizenii str. W23] gi|296151814|gb|EFG92689.1| signal recognition particle-docking protein FtsY [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412570|gb|ADM37689.1| signal recognition particle (docking protein) [Bacillus subtilis subsp. spizizenii str. W23] Length = 329 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 125/305 (40%), Positives = 187/305 (61%), Gaps = 10/305 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K+ ++ S K G T + + D++S R++D+ EELE++LI +D+G Sbjct: 9 EKITKQTDSVSEKFKDGLEKTRSSFQNKVNDLVSRYRKVDEDFFEELEEVLISADVGFTT 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH------RPHVILV 116 ++++EL K+ K ++Q + +V +I + L+ + + S R +VIL+ Sbjct: 69 VMELIDEL--KKEVKRRNIQDPM-EVQSVISEKLVEIYNSGDEQISELNIQDGRLNVILL 125 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGKL+ K+ G V+LAAGDTFR+ AI+QL++W +RT + GS Sbjct: 126 VGVNGVGKTTTIGKLAHKLKQEGKSVVLAAGDTFRAGAIEQLEVWGERTGVPVIKQTAGS 185 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D AA+ Y+A A+A+ DVLI DTAGRL N LM + K+ RV++R P APH VL Sbjct: 186 DPAAVIYDAVHAAKARNADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPEAPHEVLLA 245 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDATTGQNA+ Q + F TG+ +TK+DGTA+GG ++ I +IPV +G+GE ++ Sbjct: 246 LDATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELQIPVKLVGLGEKVD 305 Query: 297 DLEPF 301 DL+ F Sbjct: 306 DLQEF 310 >gi|317405462|gb|EFV85772.1| cell division protein [Achromobacter xylosoxidans C54] Length = 328 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 119/304 (39%), Positives = 181/304 (59%), Gaps = 11/304 (3%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW+ +L +G + T + I I ++D+ + EELE LI +D G+ +K++ L Sbjct: 28 SWLSRLKQGLSRTG----QSIGGIFVGVKVDENLFEELESALIMADAGLEATEKLLTALR 83 Query: 72 TKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + + + +V + +L+ L PL + F+ + P V+++ GVNG GKTT IGK Sbjct: 84 ARVKKERIEDPAKVKAALRQLLADHLRPLERAFDLKRAQ-PLVVMIAGVNGAGKTTSIGK 142 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ G V+LAAGDTFR+AA +QL W R + V S+ G D AA+A+++ + Sbjct: 143 LAHTFQRQGASVLLAAGDTFRAAAREQLIEWGSRNNVT-VISQDGGDPAAVAFDSVNAGR 201 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ + V+++DTAGRL LM + K+ RV+ + DP APH VL V+D TGQNAL Q+ Sbjct: 202 ARGMGVVMVDTAGRLPTQLHLMEELKKIRRVIGKADPAAPHEVLLVVDGNTGQNALAQIR 261 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK----IPVYFLGVGEGINDLEPFVAKDF 306 F A TGL++TK+DGTA+GG L + + IPVY++GVGE + DL+PFVA +F Sbjct: 262 AFDAAINLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGESLEDLQPFVADEF 321 Query: 307 SAVI 310 + + Sbjct: 322 AGAL 325 >gi|255994065|ref|ZP_05427200.1| signal recognition particle-docking protein FtsY [Eubacterium saphenum ATCC 49989] gi|255993733|gb|EEU03822.1| signal recognition particle-docking protein FtsY [Eubacterium saphenum ATCC 49989] Length = 293 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 130/293 (44%), Positives = 180/293 (61%), Gaps = 13/293 (4%) Query: 19 KGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77 +GF S L E + DIISS+ +DD + EEL D LI +DIGV A++I+E L K K Sbjct: 6 RGFFSG---LSERLGDIISSKPAVDDDMLEELTDELIMADIGVDTAERIIE--LLKSSIK 60 Query: 78 D---VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 D + + V Y +S+ I K++ D S + VILV+GVNG GKTT I K++ Sbjct: 61 DEGLTTPEEVKYKLSKTIEKIV---DVEGTMDLSGKS-VILVIGVNGSGKTTGIAKMANV 116 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 KV+LAAGDTFR+AA QL WAD V + G+D +A+ ++A ++A+ V Sbjct: 117 FKQHDKKVLLAAGDTFRAAAAKQLSHWADAVGVSVVKHDEGADPSAVVFDAISASKARNV 176 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D LI+DTAGRL N LM + KM RV++R P A + VLDA TG+NAL QVE F Sbjct: 177 DTLIVDTAGRLQNKKNLMDELSKMKRVVQREYPEAKLYTMLVLDANTGKNALSQVEKFSE 236 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 V+ G+++TKMDGTA+GG ++ I +KIPV ++G+GE D+ F A++FS Sbjct: 237 VSAIDGIMLTKMDGTAKGGIVVTIADVYKIPVIYMGIGEKKEDICEFDAREFS 289 >gi|254556539|ref|YP_003062956.1| signal recognition particle receptor FtsY [Lactobacillus plantarum JDM1] gi|254045466|gb|ACT62259.1| signal recognition particle receptor FtsY [Lactobacillus plantarum JDM1] Length = 515 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 119/274 (43%), Positives = 165/274 (60%), Gaps = 8/274 (2%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-M 97 R +D+ ++LED LI SD+G A +I +EL + K+ ++ + V ++ K++ M Sbjct: 233 RHVDEAFFDDLEDTLIESDVGYETAMRISDELRDEVKLKNAKSKKEISSV--IVEKLVDM 290 Query: 98 PLSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 D S P VIL VGVNG GKTT IGK++ G KV+LAA DTFR+ Sbjct: 291 YGEAGEGEDNSIHMAKSGPTVILFVGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRA 350 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AI QL++W R D V SD AA+ ++A K+A+A+ DVL +DTAGRL N LM Sbjct: 351 GAIQQLQVWGQRDGVDVVAKAEKSDPAAVCFDAVKKAKAEDYDVLFVDTAGRLQNKVNLM 410 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + K+ RV+ R P APH VL VLDATTGQNAL Q ++F +G+++TK+DGTARG Sbjct: 411 NELEKIKRVITREIPDAPHEVLLVLDATTGQNALNQAKLFKQSTDVSGIVLTKLDGTARG 470 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G ++ I + V ++G+GE + DL PF A DF Sbjct: 471 GIVLAIRNELHLAVKYVGLGEKVTDLRPFNANDF 504 >gi|300767268|ref|ZP_07077180.1| cell division protein FtsY [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495087|gb|EFK30243.1| cell division protein FtsY [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 512 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 119/274 (43%), Positives = 165/274 (60%), Gaps = 8/274 (2%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-M 97 R +D+ ++LED LI SD+G A +I +EL + K+ ++ + V ++ K++ M Sbjct: 230 RHVDEAFFDDLEDTLIESDVGYETAMRISDELRDEVKLKNAKSKKEISSV--IVEKLVDM 287 Query: 98 PLSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 D S P VIL VGVNG GKTT IGK++ G KV+LAA DTFR+ Sbjct: 288 YGEAGEGEDNSIHMAKSGPTVILFVGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRA 347 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AI QL++W R D V SD AA+ ++A K+A+A+ DVL +DTAGRL N LM Sbjct: 348 GAIQQLQVWGQRDGVDVVAKAEKSDPAAVCFDAVKKAKAEDYDVLFVDTAGRLQNKVNLM 407 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + K+ RV+ R P APH VL VLDATTGQNAL Q ++F +G+++TK+DGTARG Sbjct: 408 NELEKIKRVITREIPDAPHEVLLVLDATTGQNALNQAKLFKQSTDVSGIVLTKLDGTARG 467 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G ++ I + V ++G+GE + DL PF A DF Sbjct: 468 GIVLAIRNELHLAVKYVGLGEKVTDLRPFNANDF 501 >gi|153003590|ref|YP_001377915.1| signal recognition particle-docking protein FtsY [Anaeromyxobacter sp. Fw109-5] gi|152027163|gb|ABS24931.1| signal recognition particle-docking protein FtsY [Anaeromyxobacter sp. Fw109-5] Length = 465 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 117/272 (43%), Positives = 170/272 (62%), Gaps = 7/272 (2%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLM-- 97 +DD V +LE++L +DIGV A +++E + K++S L D + E I ++L Sbjct: 189 VDDAVLADLEEVLFTADIGVRTATRLLESARERVRRKELSDPERLKDALREEIARILALD 248 Query: 98 ---PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 ++P RP V++VVGVNG GKTT IGKL+ K+ G +V+L AGDTFR+AA Sbjct: 249 GQPAAARPLELG-PARPWVVMVVGVNGSGKTTTIGKLASKLQAEGKRVLLGAGDTFRAAA 307 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 +QL+IWA+R A V + G+D A++ +EA ++ DV++ DTAGRLH + LM Sbjct: 308 GEQLEIWAERVGAPIVRGKEGADPASVCFEAVQRGAQDGADVVLCDTAGRLHTKAPLMEE 367 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + K+ RV+ + APH VL VLD+T GQNA+ Q FH G TG+++TK+DGTA+GG Sbjct: 368 LKKVKRVIGKAVDGAPHEVLLVLDSTNGQNAIAQARQFHEALGVTGIVLTKIDGTAKGGV 427 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +I I IPV ++GVGE + DL+ FV +F Sbjct: 428 IIGICDELGIPVRYVGVGESVADLKAFVPAEF 459 >gi|312622588|ref|YP_004024201.1| signal recognition particle-docking protein ftsy [Caldicellulosiruptor kronotskyensis 2002] gi|312203055|gb|ADQ46382.1| signal recognition particle-docking protein FtsY [Caldicellulosiruptor kronotskyensis 2002] Length = 301 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 126/299 (42%), Positives = 189/299 (63%), Gaps = 8/299 (2%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L +G + T E + ++ S R++DD + EELE++L+ SD+GV +QKI+E Sbjct: 1 MGFFDRLKEGLSKTKKNFTEKVESLLKSFRQIDDDLFEELEEVLVLSDVGVKTSQKIIEN 60 Query: 70 LLTKRYAKDVSVQRVL--YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L + V +R+L V EL+ + ++ + N P +IL+VGVNGVGKTT Sbjct: 61 LKER-----VKKERILDPQIVKELLKEEMLNIINLENKLSEKYPLIILMVGVNGVGKTTS 115 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGK++ + G KV++AA DTFR+AA +QL+IWA R D + G+D AA+ ++ + Sbjct: 116 IGKIANLLKSNGKKVLVAAADTFRAAAAEQLEIWAKRVGCDIIKHVEGADPAAVVFDGIQ 175 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 +A+K DVLI+DTAGRLH L+ + K+ RV+ + P A L V+DATTGQNAL Sbjct: 176 AMRARKADVLIVDTAGRLHTKKNLIEELKKINRVINQQMPEAAKETLLVIDATTGQNALN 235 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q + F+ +G+++TK+DGTA+GG +I I KIPV F+GVGE I+DL+ F AK+F Sbjct: 236 QAKEFNQAVNISGIVLTKLDGTAKGGIVISIYDELKIPVKFVGVGEKIDDLQYFNAKEF 294 >gi|257463638|ref|ZP_05628029.1| Signal recognition particle receptor FtsY [Fusobacterium sp. D12] Length = 347 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 124/299 (41%), Positives = 181/299 (60%), Gaps = 10/299 (3%) Query: 21 FASTSLKL---KEGI----TDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 FAS KL +EG+ + SSR+ +DD + EELE+LL++SDIG+ + QKIV +L Sbjct: 48 FASLHEKLFQTREGLFSKMKSLFSSRKVIDDAMYEELEELLVQSDIGLEMTQKIVRDLEG 107 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + V +Y V ++ L+ + F + VIL+VGVNGVGKTT IGK+ Sbjct: 108 AVKKQGVKNPEEVYTVLKTVMEDYLIESEEKFPRE-EQNLQVILIVGVNGVGKTTTIGKI 166 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K+ G KV+L AGDTFR+AA++QL+ WA R+ A+ V + G+D ++ ++ +A+ Sbjct: 167 AAKLKKEGKKVILGAGDTFRAAAVEQLEEWARRSEAELVKGKEGADPGSVVFDTLSKAEE 226 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 DV IIDTAGRLHN LM + K+ V+++ + + V+D TTGQNAL Q + Sbjct: 227 IGADVAIIDTAGRLHNKGYLMKELEKINNVVRKKIGDRYYESILVIDGTTGQNALNQAKE 286 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ V TG I+TK+DGTA+GG + + + P+ F+GVGE I DL F KDF A + Sbjct: 287 FNEVTRLTGFIITKLDGTAKGGIVFSLSELLQKPIRFIGVGEKIEDLRKFSKKDFIAAL 345 >gi|317061190|ref|ZP_07925675.1| cell division protein ftsY [Fusobacterium sp. D12] gi|313686866|gb|EFS23701.1| cell division protein ftsY [Fusobacterium sp. D12] Length = 350 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 124/299 (41%), Positives = 181/299 (60%), Gaps = 10/299 (3%) Query: 21 FASTSLKL---KEGI----TDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 FAS KL +EG+ + SSR+ +DD + EELE+LL++SDIG+ + QKIV +L Sbjct: 51 FASLHEKLFQTREGLFSKMKSLFSSRKVIDDAMYEELEELLVQSDIGLEMTQKIVRDLEG 110 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + V +Y V ++ L+ + F + VIL+VGVNGVGKTT IGK+ Sbjct: 111 AVKKQGVKNPEEVYTVLKTVMEDYLIESEEKFPRE-EQNLQVILIVGVNGVGKTTTIGKI 169 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K+ G KV+L AGDTFR+AA++QL+ WA R+ A+ V + G+D ++ ++ +A+ Sbjct: 170 AAKLKKEGKKVILGAGDTFRAAAVEQLEEWARRSEAELVKGKEGADPGSVVFDTLSKAEE 229 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 DV IIDTAGRLHN LM + K+ V+++ + + V+D TTGQNAL Q + Sbjct: 230 IGADVAIIDTAGRLHNKGYLMKELEKINNVVRKKIGDRYYESILVIDGTTGQNALNQAKE 289 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ V TG I+TK+DGTA+GG + + + P+ F+GVGE I DL F KDF A + Sbjct: 290 FNEVTRLTGFIITKLDGTAKGGIVFSLSELLQKPIRFIGVGEKIEDLRKFSKKDFIAAL 348 >gi|33594352|ref|NP_881996.1| cell division protein [Bordetella pertussis Tohama I] gi|33564427|emb|CAE43736.1| cell division protein [Bordetella pertussis Tohama I] gi|332383763|gb|AEE68610.1| cell division protein [Bordetella pertussis CS] Length = 369 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 119/304 (39%), Positives = 182/304 (59%), Gaps = 11/304 (3%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW+ +L +G + T + I + ++D+ + EELE LI +D G+ +K++ L Sbjct: 69 SWLSRLKQGLSRTG----QNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALR 124 Query: 72 TKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + + + +V + +L+ L PL + F+ + P V+++ GVNG GKTT IGK Sbjct: 125 ARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLGRAQ-PLVVMIAGVNGAGKTTSIGK 183 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ G V+LAAGDTFR+AA +QL W R + V S+ G D AA+A+++ + Sbjct: 184 LAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVT-VISQDGGDPAAVAFDSVNAGR 242 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ V V+++DTAGRL LM + K+ RV+ + + APH VL V+D TGQNAL Q+ Sbjct: 243 ARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQIR 302 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK----IPVYFLGVGEGINDLEPFVAKDF 306 F A TGL++TK+DGTA+GG L + + IPVY++GVGEG+ DL+PFVA +F Sbjct: 303 AFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEF 362 Query: 307 SAVI 310 +A + Sbjct: 363 AAAL 366 >gi|315031782|gb|EFT43714.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0017] Length = 442 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109 LI +D+G + KI E L ++ K +V++ + +I KM+ + N + Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230 Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P+ VIL VGVNGVGKTT IGKL+ + G KV++AA DTFR+ AIDQL +W +R Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 290 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V G D AA+ ++A ++A+A++ DVL++DTAGRL N LM + K+ RV++R Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL V+DATTGQNA+ Q + F TGL++TK+DGTA+GG +I I +PV Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GEGINDLEPF A DF+ Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431 >gi|300854472|ref|YP_003779456.1| putative cell division protein [Clostridium ljungdahlii DSM 13528] gi|300434587|gb|ADK14354.1| predicted cell division protein [Clostridium ljungdahlii DSM 13528] Length = 303 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 193/297 (64%), Gaps = 6/297 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + KL G T L I+D+++S +DD + EELE++LI +DIGV I+++L Sbjct: 5 FFDKLKNGLEKTKSNLTGKISDMLTSAVSIDDDLYEELEEILITADIGVETTTYIIDKLK 64 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 K + + + +++ + ++++ + + + + P +ILV+GVNGVGKTT IG Sbjct: 65 EKIKEQKIKDPSL---INQCLKEVIIDILGDEKNSIEPEKTPEIILVIGVNGVGKTTSIG 121 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 K+S K+ D+G KV++AA DTFR+AAIDQL++W+ R D + + GSD AA+ ++A + A Sbjct: 122 KMSSKLKDSGNKVIMAAADTFRAAAIDQLEVWSRRAGVDIIKHQEGSDPAAVIFDAIQAA 181 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+K +VLI DTAGRLHN LM + K+ RV++R A L VLDATTGQNA++Q Sbjct: 182 KARKAEVLICDTAGRLHNKKNLMDELSKINRVIEREYKEAFKQTLLVLDATTGQNAVQQA 241 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F V G+I+TK+DGTA+GG +I I + IPV +GVGEGI+DL+ F ++DF Sbjct: 242 KQFTEVCPIDGIILTKLDGTAKGGIVISIKHSLDIPVKLIGVGEGIDDLQEFCSRDF 298 >gi|257866579|ref|ZP_05646232.1| signal recognition particle protein [Enterococcus casseliflavus EC30] gi|257872905|ref|ZP_05652558.1| signal recognition particle protein [Enterococcus casseliflavus EC10] gi|257800537|gb|EEV29565.1| signal recognition particle protein [Enterococcus casseliflavus EC30] gi|257807069|gb|EEV35891.1| signal recognition particle protein [Enterococcus casseliflavus EC10] Length = 429 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 126/307 (41%), Positives = 186/307 (60%), Gaps = 10/307 (3%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQK 65 A E+ S K TKG + + + ++ ++ R +D+ EE+E+ LI +D+G A K Sbjct: 115 APETESVQDKYTKGLTKSRKTFGQRMNELFANFRTVDEDFFEEVEETLIGADVGFDAAMK 174 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL------SKPFNWDFSHRPHVILVVGV 119 I + L + ++V + DV +I + L+ L + + VIL VGV Sbjct: 175 IADALRQEVKLRNV---KKTADVQNVIIEKLVDLYGEAGVGEVNELNMQSGLTVILFVGV 231 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+ + G KV+LAA DTFR+ AIDQL +W +R + V G D A Sbjct: 232 NGVGKTTSIGKLAHQFKAEGKKVLLAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPA 291 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ ++A ++A+ + DVL++DTAGRL N LM + K+ R+++R+DP APH VL VLDA Sbjct: 292 AVVFDAMERAKRENADVLLVDTAGRLQNKVNLMNELEKIKRIIQRVDPTAPHEVLLVLDA 351 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNA+ Q + F +GL++TK+DGTA+GG ++ I ++PV +G+GEGINDLE Sbjct: 352 TTGQNAMNQAKQFKETTDVSGLVLTKLDGTAKGGIVLAIRNELRLPVKLVGLGEGINDLE 411 Query: 300 PFVAKDF 306 PF +F Sbjct: 412 PFDPNEF 418 >gi|15895029|ref|NP_348378.1| Signal recognition particle GTPase, FtsY [Clostridium acetobutylicum ATCC 824] gi|15024721|gb|AAK79718.1|AE007684_6 Signal recognition particle GTPase, FtsY [Clostridium acetobutylicum ATCC 824] Length = 303 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 132/304 (43%), Positives = 188/304 (61%), Gaps = 18/304 (5%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 ++ KL G + T L I+D+++S +DD + +ELE++LI SDIGV + I+++L Sbjct: 4 NFFDKLKNGLSKTKNNLTSKISDVLTSTVTIDDDLYDELEEILITSDIGVETSLYIIDKL 63 Query: 71 ---LTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + + KD S+ + V+ D+ LMP P ILVVGVNGV Sbjct: 64 KEKIKENKVKDPSLVNDCLKEVIKDILGDKKGSLMP---------KQIPETILVVGVNGV 114 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGK+S ++ LKV++AA DTFR+AAIDQL++W+ R + D + + GSD AA+ Sbjct: 115 GKTTSIGKISSRLKSQNLKVIMAAADTFRAAAIDQLEVWSKRANVDIIKHQEGSDPAAVV 174 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+A+K DVLI DTAGRLHN LM + K+ R++ R + L VLDATTG Sbjct: 175 FDAIEAAKARKADVLICDTAGRLHNKKNLMNELEKINRIIDREFSQSTRRTLLVLDATTG 234 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q + F V G+++TK+DGTA+GG +I I IPV F+GVGEGI+DL+ F Sbjct: 235 QNAVIQAKQFMEVCKVDGIVLTKLDGTAKGGIVIFIKHQLDIPVEFVGVGEGIDDLQEFN 294 Query: 303 AKDF 306 DF Sbjct: 295 PSDF 298 >gi|319940798|ref|ZP_08015137.1| signal recognition particle-docking protein FtsY [Sutterella wadsworthensis 3_1_45B] gi|319805680|gb|EFW02461.1| signal recognition particle-docking protein FtsY [Sutterella wadsworthensis 3_1_45B] Length = 329 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 120/304 (39%), Positives = 179/304 (58%), Gaps = 10/304 (3%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W +L G + T + I + S +D+ EELE LI +D+GV I+E L + Sbjct: 28 WFSRLKNGLSRTRVN----IVGLFSGGVVDEDFLEELEFALISADVGVETTTHILERLRS 83 Query: 73 KRYAKDVSVQR-VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + + Q V + + + +L P N D +P VI++ GVNG GKTT IGKL Sbjct: 84 DIKLQGLKTQEEVKLALRDELVTILKPAEGVLNVD-QAKPCVIMMCGVNGAGKTTSIGKL 142 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +K+ +D G V+LAAGDTFR+AA +QL +W +R + V ++ G D AA+ ++A +A Sbjct: 143 AKRFADNGKSVLLAAGDTFRAAAREQLAVWGERNRVE-VIAQTGGDPAAVVFDAVNAGRA 201 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DV+I DTAGRL + LM + ++ R ++ APH V+ V+D T GQNAL QV Sbjct: 202 RSMDVVIADTAGRLPTQTNLMEELSRIRRAQEKALEGAPHEVILVVDGTNGQNALAQVAA 261 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVT---HKIPVYFLGVGEGINDLEPFVAKDFSA 308 F A TGLI+TK+DGTA+GG L I ++P+Y++GVGE + DL+PF A++F+ Sbjct: 262 FDTYAHLTGLIVTKLDGTAKGGVLAAITAARGERRLPIYYIGVGEKLEDLQPFSAEEFAN 321 Query: 309 VITG 312 + G Sbjct: 322 ALVG 325 >gi|160892684|ref|ZP_02073474.1| hypothetical protein CLOL250_00214 [Clostridium sp. L2-50] gi|156865725|gb|EDO59156.1| hypothetical protein CLOL250_00214 [Clostridium sp. L2-50] Length = 324 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 121/300 (40%), Positives = 182/300 (60%), Gaps = 9/300 (3%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A E + ++L +G + T + + + + + +DD EELE+ I +D+G +K Sbjct: 1 MAEEKKGFFKRLKEGLSKTRNSIVDSFSSVFGASHIDDDFYEELEETFIMADMGYETTEK 60 Query: 66 IVEELLTK----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 ++E L + R + + + ++ ++ + +M++ S +DF + VILV+GVNG Sbjct: 61 VIENLKERVKEARIKEPAACKELIINI--IRDQMMVDESA---YDFEKKKSVILVIGVNG 115 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT IGKL+ + +G KV++AA DTFR+AAIDQLK WADR + + G+D AA+ Sbjct: 116 VGKTTTIGKLAAQYKKSGKKVLIAAADTFRAAAIDQLKTWADRAGVEMISHNEGADPAAV 175 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 Y+A A+A+ D+L+IDTAGRLHN LM + KM R++ R P A L VLD TT Sbjct: 176 VYDAVSAAKARNTDILLIDTAGRLHNKKNLMDELAKMRRIISRDYPDANVESLIVLDGTT 235 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL Q F V G+++TK+DGTA+GG I I +PV F+G+GE I+DL+ F Sbjct: 236 GQNALEQARQFSNVTEIDGIVITKLDGTAKGGIAIAIQAELNVPVKFIGIGEKIDDLQRF 295 >gi|295696068|ref|YP_003589306.1| signal recognition particle-docking protein FtsY [Bacillus tusciae DSM 2912] gi|295411670|gb|ADG06162.1| signal recognition particle-docking protein FtsY [Bacillus tusciae DSM 2912] Length = 313 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 130/282 (46%), Positives = 179/282 (63%), Gaps = 6/282 (2%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94 + RRLDD + +ELE+LLI +D+GV A + VE+L ++ A++ V+ L Sbjct: 26 VTGRRRLDDALFDELEELLILADVGVDQAVEWVEDL--RKQARERGVREAGELRPLLREL 83 Query: 95 MLMPL---SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 +L L S P V+LVVGVNG GKTT +GKL+ +++ G KV+LAAGDTFR Sbjct: 84 LLDVLGRDSAPLQI-HPGSLSVVLVVGVNGAGKTTTLGKLAHRLTGEGRKVLLAAGDTFR 142 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 + AI+QL +W R D + + GSD AA+ ++A + +++ VDV++ DTAGRLHN + L Sbjct: 143 AGAIEQLHVWGSRAQVDVIRQQQGSDPAAVVFDAIQAGRSRGVDVVLCDTAGRLHNKTNL 202 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 MA + K+ RV R APH VL V+DATTGQNAL Q E+F AG TG+++TK+DGTA+ Sbjct: 203 MAELEKIRRVAAREVDGAPHEVLLVIDATTGQNALTQAELFSRSAGVTGVVLTKLDGTAK 262 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 GG + I IPV F+GVGEGI DLEPF + F + G Sbjct: 263 GGMALTIRRRLGIPVKFVGVGEGIEDLEPFDPEIFVDALLGT 304 >gi|33595534|ref|NP_883177.1| cell division protein [Bordetella parapertussis 12822] gi|33565612|emb|CAE40258.1| cell division protein [Bordetella parapertussis] Length = 355 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 119/304 (39%), Positives = 181/304 (59%), Gaps = 11/304 (3%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW+ +L +G + T + I + ++D+ + EELE LI +D G+ +K++ L Sbjct: 55 SWLSRLKQGLSRTG----QNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALR 110 Query: 72 TKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + + + +V + +L+ L PL + F+ + P V+++ GVNG GKTT IGK Sbjct: 111 ARVKKERIDDPAQVKTALRQLLADHLWPLERSFDLGRAQ-PLVVMIAGVNGAGKTTSIGK 169 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ G V+LAAGDTFR+AA +QL W R + V S+ G D AA+A+++ + Sbjct: 170 LAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVT-VISQDGGDPAAVAFDSVNAGR 228 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ V V+++DTAGRL LM + K+ RV+ + + APH VL V+D TGQNAL Q+ Sbjct: 229 ARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQIR 288 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVV----THKIPVYFLGVGEGINDLEPFVAKDF 306 F A TGL++TK+DGTA+GG L + IPVY++GVGEG+ DL+PFVA +F Sbjct: 289 AFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEF 348 Query: 307 SAVI 310 +A + Sbjct: 349 AAAL 352 >gi|257876183|ref|ZP_05655836.1| signal recognition particle protein [Enterococcus casseliflavus EC20] gi|257810349|gb|EEV39169.1| signal recognition particle protein [Enterococcus casseliflavus EC20] Length = 430 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 126/307 (41%), Positives = 186/307 (60%), Gaps = 10/307 (3%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQK 65 A E+ S K TKG + + + ++ ++ R +D+ EE+E+ LI +D+G A K Sbjct: 116 APETESVQDKYTKGLTKSRKTFGQRMNELFANFRTVDEDFFEEVEETLIGADVGFDAAMK 175 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL------SKPFNWDFSHRPHVILVVGV 119 I + L + ++V + DV +I + L+ L + + VIL VGV Sbjct: 176 IADALRQEVKLRNV---KKTADVQNVIIEKLVDLYGEAGVGEVNELNMQSGLTVILFVGV 232 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+ + G KV+LAA DTFR+ AIDQL +W +R + V G D A Sbjct: 233 NGVGKTTSIGKLAHQFKAEGKKVLLAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPA 292 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ ++A ++A+ + DVL++DTAGRL N LM + K+ R+++R+DP APH VL VLDA Sbjct: 293 AVVFDAMERAKRENADVLLVDTAGRLQNKVNLMNELEKIKRIIQRVDPTAPHEVLLVLDA 352 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNA+ Q + F +GL++TK+DGTA+GG ++ I ++PV +G+GEGINDLE Sbjct: 353 TTGQNAMNQAKQFKETTDVSGLVLTKLDGTAKGGIVLAIRNELRLPVKLVGLGEGINDLE 412 Query: 300 PFVAKDF 306 PF +F Sbjct: 413 PFDPNEF 419 >gi|227517301|ref|ZP_03947350.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0104] gi|227075308|gb|EEI13271.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0104] Length = 442 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109 LI +D+G + KI E L ++ K +V++ + +I KM+ + N + Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230 Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P+ VIL VGVNGVGKTT IGKL+ + G KV++AA DTFR+ AIDQL +W +R Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 290 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V G D AA+ ++A ++A+A++ DVL++DTAGRL N LM + K+ RV++R Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL V+DATTGQNA+ Q + F TGL++TK+DGTA+GG +I I +PV Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GEGINDLEPF A DF+ Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431 >gi|322385043|ref|ZP_08058693.1| cell division protein FtsY [Streptococcus cristatus ATCC 51100] gi|321270953|gb|EFX53863.1| cell division protein FtsY [Streptococcus cristatus ATCC 51100] Length = 498 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 118/273 (43%), Positives = 169/273 (61%), Gaps = 8/273 (2%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R +D+ E+LE+LLI SD+GV VA + E+L RY + + + +LI + L+ Sbjct: 220 RSVDEDFFEDLEELLITSDVGVQVASNLTEDL---RYEARLENAKKPDALRQLIIEKLVD 276 Query: 99 LSKP---FNW--DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 + + FN +F + V+L VGVNGVGKTT IGKL+ K G KVML A DTFR+ Sbjct: 277 IYEKDGRFNEKINFQNGLTVMLFVGVNGVGKTTSIGKLAYKYKQEGKKVMLVAADTFRAG 336 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A+ QL W R V SD A++ ++ ++A+A+ VD+L+IDTAGRL N LMA Sbjct: 337 AVAQLAEWGRRVDVPVVTGPEKSDPASVVFDGLERAKAENVDILMIDTAGRLQNKDNLMA 396 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + K+ R++KR+DP APH LDA+TGQNAL Q + F + TG+++TK+DGTARGG Sbjct: 397 ELEKIGRIIKRVDPAAPHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGG 456 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++ I IPV +G GE I+D+ F +++F Sbjct: 457 VVLAIRQELDIPVKLIGFGEKIDDIGEFNSENF 489 >gi|124005298|ref|ZP_01690139.1| signal recognition particle-docking protein FtsY [Microscilla marina ATCC 23134] gi|123989120|gb|EAY28698.1| signal recognition particle-docking protein FtsY [Microscilla marina ATCC 23134] Length = 319 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 114/277 (41%), Positives = 175/277 (63%), Gaps = 6/277 (2%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYD-VS 89 ++ ++DD V ++LE++LI SD+GV KI+E + +R K+ + +L D ++ Sbjct: 34 LVGKSKVDDEVLDDLEEVLISSDVGVDTTIKIIERI-EERVKKEKFFANELDGILKDEIA 92 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 +L+ + + F+ + +P+VI+VVGVNGVGKTT IGKL+ + AG +V+L A DT Sbjct: 93 DLLAESNQDNVEEFDLPKNTKPYVIMVVGVNGVGKTTTIGKLANQFKLAGKEVVLGAADT 152 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+AA+DQLK+W +R + + D A++A++A ++ DV+I+DTAGRL Sbjct: 153 FRAAAVDQLKVWGERVGVPVIELGMNKDPASVAFDAVEKGVEMNADVVIVDTAGRLQTKV 212 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 LM + K+ RV+ ++ P APH VL VLD +TGQNA+ Q + F T L +TK+DGT Sbjct: 213 PLMNELSKIKRVMSKVIPEAPHEVLLVLDGSTGQNAISQAKAFTEATEVTALAITKLDGT 272 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 A+GG +I I K+PV ++GVGEGI DL+ F +F Sbjct: 273 AKGGVVIGISDQFKVPVKYIGVGEGIEDLQIFNKHEF 309 >gi|33599932|ref|NP_887492.1| cell division protein [Bordetella bronchiseptica RB50] gi|33567529|emb|CAE31442.1| cell division protein [Bordetella bronchiseptica RB50] Length = 355 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 119/304 (39%), Positives = 181/304 (59%), Gaps = 11/304 (3%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW+ +L +G + T + I + ++D+ + EELE LI +D G+ +K++ L Sbjct: 55 SWLSRLKQGLSRTG----QNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALR 110 Query: 72 TKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + + + +V + +L+ L PL + F+ + P V+++ GVNG GKTT IGK Sbjct: 111 ARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLGRAQ-PLVVMIAGVNGAGKTTSIGK 169 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ G V+LAAGDTFR+AA +QL W R + V S+ G D AA+A+++ + Sbjct: 170 LAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVT-VISQDGGDPAAVAFDSVNAGR 228 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ V V+++DTAGRL LM + K+ RV+ + + APH VL V+D TGQNAL Q+ Sbjct: 229 ARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQIR 288 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVV----THKIPVYFLGVGEGINDLEPFVAKDF 306 F A TGL++TK+DGTA+GG L + IPVY++GVGEG+ DL+PFVA +F Sbjct: 289 AFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEF 348 Query: 307 SAVI 310 +A + Sbjct: 349 AAAL 352 >gi|288553092|ref|YP_003425027.1| signal recognition particle-docking protein FtsY [Bacillus pseudofirmus OF4] gi|288544252|gb|ADC48135.1| signal recognition particle-docking protein FtsY [Bacillus pseudofirmus OF4] Length = 333 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 114/260 (43%), Positives = 166/260 (63%), Gaps = 8/260 (3%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111 +LI +D+GV ++++L + +++ + D+ +I + L L + D + Sbjct: 58 ILIGADVGVNTVMTLIDDLKDEVRIRNIKDTK---DIQPVISEKLAELLQKEEEDAALNI 114 Query: 112 H-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 VILVVGVNGVGKTT IGKL+ + G VMLAAGDTFR+ AI+QL++W +R Sbjct: 115 QTDGMTVILVVGVNGVGKTTTIGKLANHLKQDGKSVMLAAGDTFRAGAIEQLEVWGERVG 174 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + + GSD AA+ Y+A + A+++ VDVLI DTAGRL N LM + K+ RV++R Sbjct: 175 VDVIKQQEGSDPAAVMYDALQAAKSRGVDVLICDTAGRLQNKVNLMNELEKVKRVIEREV 234 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL VLDATTGQNA+ Q + F +G+++TK+DGTA+GG ++ I IPV Sbjct: 235 PSAPHEVLLVLDATTGQNAMSQAKTFGKSTDVSGIVLTKLDGTAKGGIVLAIRHELDIPV 294 Query: 287 YFLGVGEGINDLEPFVAKDF 306 F+G+GE ++DL+PF A+ F Sbjct: 295 KFVGLGEKVDDLQPFNAEQF 314 >gi|160938004|ref|ZP_02085361.1| hypothetical protein CLOBOL_02897 [Clostridium bolteae ATCC BAA-613] gi|158438998|gb|EDP16753.1| hypothetical protein CLOBOL_02897 [Clostridium bolteae ATCC BAA-613] Length = 317 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 131/298 (43%), Positives = 181/298 (60%), Gaps = 8/298 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L +G A T + GI I S +DD EE+E+ LI D+G+ IVE+L Sbjct: 8 FFGRLVEGLAKTRSNIVSGIDSIFSGFSAIDDDFYEEIEETLIMGDLGIQTTMSIVEDLR 67 Query: 72 TKRYAKDVSVQRVLYDVSELIH---KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 K + + R + EL+ K M L + ++F HR V+LV+GVNGVGKTT + Sbjct: 68 KKVKEQHI---REPEECKELLINSIKEQMDLGEN-AYEFEHRKSVVLVIGVNGVGKTTSV 123 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ ++ D G +V+LAA DTFR+AAI+QL WA R + + + GSD AA+ Y+A Sbjct: 124 GKLAGQLKDDGRRVILAAADTFRAAAIEQLTEWASRAGVELIAQQEGSDPAAVIYDAVAA 183 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+++K DVLI DTAGRLHN LM + K+ R++ + P A L VLD TTGQNAL Q Sbjct: 184 AKSRKADVLICDTAGRLHNKKNLMEELKKINRIIDKEYPDAYRETLVVLDGTTGQNALAQ 243 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F VA TG+I+TK+DGTA+GG + I IPV ++G+GE I+DL+ F A DF Sbjct: 244 ARQFMEVADITGIILTKLDGTAKGGIAVAIQSELGIPVKYIGIGEKIDDLQKFNADDF 301 >gi|315172941|gb|EFU16958.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX1346] Length = 442 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109 LI +D+G + KI E L ++ K +V++ + +I KM+ + N + Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230 Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P+ VIL VGVNGVGKTT IGKL+ + G KV++AA DTFR+ AIDQL +W +R Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 290 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V G D AA+ ++A ++A+A++ DVL++DTAGRL N LM + K+ RV++R Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL V+DATTGQNA+ Q + F TGL++TK+DGTA+GG +I I +PV Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GEGINDLEPF A DF+ Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431 >gi|315151031|gb|EFT95047.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0012] Length = 442 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109 LI +D+G + KI E L ++ K +V++ + +I KM+ + N + Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230 Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P+ VIL VGVNGVGKTT IGKL+ + G KV++AA DTFR+ AIDQL +W +R Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 290 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V G D AA+ ++A ++A+A++ DVL++DTAGRL N LM + K+ RV++R Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL V+DATTGQNA+ Q + F TGL++TK+DGTA+GG +I I +PV Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GEGINDLEPF A DF+ Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431 >gi|218778639|ref|YP_002429957.1| signal recognition particle-docking protein FtsY [Desulfatibacillum alkenivorans AK-01] gi|218760023|gb|ACL02489.1| signal recognition particle-docking protein FtsY [Desulfatibacillum alkenivorans AK-01] Length = 359 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 123/295 (41%), Positives = 174/295 (58%), Gaps = 7/295 (2%) Query: 16 KLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +L A T L I D I+ L + EELE+ LI +D+GV ++E + K Sbjct: 63 RLKDKLAKTRDVLNTPIEDFFITKTELTEDSLEELEETLITADMGVNTVMDLMEPVAEKV 122 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD---FSHRPHVILVVGVNGVGKTTVIGKL 131 K ++ + L + L ML L KP + + + +P VI+VVGVNGVGKTT IGKL Sbjct: 123 NKKQITNSKELR--AALTDAML-DLIKPVHENKELPNKKPLVIMVVGVNGVGKTTTIGKL 179 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + G KVML A DTFR+AA++QL+IWA+R V SD AA+AY+ A+A Sbjct: 180 AANFKKQGKKVMLVAADTFRAAAVEQLEIWAERAGVQIVRHRDNSDPAAVAYDGVAAAEA 239 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DV+IIDTAGRLH LM + K+ R + P +PH V+DA TGQNA+ Q ++ Sbjct: 240 RGMDVVIIDTAGRLHTQVNLMEELKKIRRSCHKSLPGSPHETWLVIDANTGQNAVSQAKL 299 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+I+TK+DGTA+GG ++ I +P+ ++G+GE DL F A++F Sbjct: 300 FHEAIGVTGMILTKVDGTAKGGIVVSICHDMDVPIRYIGLGEKAEDLREFEAREF 354 >gi|119510388|ref|ZP_01629522.1| Cell division transporter substrate-binding protein FtsY [Nodularia spumigena CCY9414] gi|119464917|gb|EAW45820.1| Cell division transporter substrate-binding protein FtsY [Nodularia spumigena CCY9414] Length = 553 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 110/315 (34%), Positives = 187/315 (59%), Gaps = 6/315 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + V+ E ++W++KL +G T + + I+ L+ +E+E L+++D+GV Sbjct: 239 EDVSIEEITWLKKLRQGLGKTRRNILNQLKAIVGQGPLNQAAVDEIETALLQADVGVEAT 298 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVI---LVVGV 119 I+ L K A+ + + + +++ ML PL K + F+ + L+ GV Sbjct: 299 DYIISALQKKLLAEVTPPEEAIAYLKQILRDMLDAPLQKAESLSFTPEKETLNIWLITGV 358 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178 NG GKTT IGK+S +G K ++ A DTFR+AA++Q+K+W +R+ + + + +D Sbjct: 359 NGAGKTTTIGKISHLAQKSGYKCLIGAADTFRAAAVEQVKVWGNRSGVEVIANPGKNTDP 418 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A AQA++ ++L++DTAGRL N LM + K+ R++ + P+A L VLD Sbjct: 419 AAVVFDAIAAAQARETELLLVDTAGRLQNKKNLMDELAKIRRIIDKKAPNAKIESLLVLD 478 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 AT GQN LRQ E+F A +G+++TK+DGTA+GG + +V +P+ F+G GEG+ DL Sbjct: 479 ATLGQNGLRQAEVFAQAAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGAGEGMEDL 538 Query: 299 EPFVAKDF-SAVITG 312 PF + +F A+++G Sbjct: 539 RPFSSYEFVEALLSG 553 >gi|229547478|ref|ZP_04436203.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX1322] gi|300861537|ref|ZP_07107621.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TUSoD Ef11] gi|307273590|ref|ZP_07554818.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0855] gi|229307402|gb|EEN73389.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX1322] gi|295114416|emb|CBL33053.1| signal recognition particle-docking protein FtsY [Enterococcus sp. 7L76] gi|300848998|gb|EFK76751.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TUSoD Ef11] gi|306509603|gb|EFM78645.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0855] gi|315026457|gb|EFT38389.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX2137] gi|315028380|gb|EFT40312.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX4000] gi|315145471|gb|EFT89487.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX2141] gi|315146608|gb|EFT90624.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX4244] Length = 442 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109 LI +D+G + KI E L ++ K +V++ + +I KM+ + N + Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230 Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P+ VIL VGVNGVGKTT IGKL+ + G KV++AA DTFR+ AIDQL +W +R Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 290 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V G D AA+ ++A ++A+A++ DVL++DTAGRL N LM + K+ RV++R Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL V+DATTGQNA+ Q + F TGL++TK+DGTA+GG +I I +PV Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GEGINDLEPF A DF+ Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431 >gi|229548053|ref|ZP_04436778.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis ATCC 29200] gi|307292113|ref|ZP_07571979.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0411] gi|312905396|ref|ZP_07764510.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0635] gi|229306842|gb|EEN72838.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis ATCC 29200] gi|306496766|gb|EFM66317.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0411] gi|310631125|gb|EFQ14408.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0635] gi|315161162|gb|EFU05179.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0645] gi|315577150|gb|EFU89341.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0630] Length = 442 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109 LI +D+G + KI E L ++ K +V++ + +I KM+ + N + Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230 Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P+ VIL VGVNGVGKTT IGKL+ + G KV++AA DTFR+ AIDQL +W +R Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 290 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V G D AA+ ++A ++A+A++ DVL++DTAGRL N LM + K+ RV++R Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL V+DATTGQNA+ Q + F TGL++TK+DGTA+GG +I I +PV Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GEGINDLEPF A DF+ Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431 >gi|307284873|ref|ZP_07565029.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0860] gi|306503132|gb|EFM72389.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0860] gi|315167202|gb|EFU11219.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX1341] Length = 442 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109 LI +D+G + KI E L ++ K +V++ + +I KM+ + N + Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230 Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P+ VIL VGVNGVGKTT IGKL+ + G KV++AA DTFR+ AIDQL +W +R Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 290 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V G D AA+ ++A ++A+A++ DVL++DTAGRL N LM + K+ RV++R Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL V+DATTGQNA+ Q + F TGL++TK+DGTA+GG +I I +PV Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GEGINDLEPF A DF+ Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431 >gi|29377551|ref|NP_816705.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis V583] gi|227554515|ref|ZP_03984562.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis HH22] gi|29345018|gb|AAO82775.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis V583] gi|227176354|gb|EEI57326.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis HH22] gi|315573243|gb|EFU85434.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0309B] gi|315581183|gb|EFU93374.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0309A] Length = 442 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109 LI +D+G + KI E L ++ K +V++ + +I KM+ + N + Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230 Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P+ VIL VGVNGVGKTT IGKL+ + G KV++AA DTFR+ AIDQL +W +R Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 290 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V G D AA+ ++A ++A+A++ DVL++DTAGRL N LM + K+ RV++R Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL V+DATTGQNA+ Q + F TGL++TK+DGTA+GG +I I +PV Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GEGINDLEPF A DF+ Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431 >gi|291544315|emb|CBL17424.1| signal recognition particle-docking protein FtsY [Ruminococcus sp. 18P13] Length = 319 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 127/312 (40%), Positives = 191/312 (61%), Gaps = 5/312 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + K+ +G T + G+ +++S ++D+ + E+LE+ +I SD+GV + +I E+ Sbjct: 1 MGLFSKIKEGLRKTKESMISGMQRVVNSFTKIDEDLFEQLEETMIMSDMGVETSVEICEK 60 Query: 70 LLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L + + V+ +++ + E+I +M+ + D S P +ILV+GVNG GKTT I Sbjct: 61 LRKRVKERGVTDPGKIMELIQEIISEMM---GEDVALDLSTTPSIILVIGVNGAGKTTTI 117 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL + G KV++AA DTFR+AAIDQL++W R D V GSD AA+ ++A Sbjct: 118 GKLCHQYKQQGKKVLVAAADTFRAAAIDQLEVWTQRAGVDLVKHAEGSDPAAVVFDAVTA 177 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+K DVLI DTAGRLHN LM + K+ R++ + L VLDATTGQNA+ Q Sbjct: 178 AKARKTDVLICDTAGRLHNKKNLMEELRKINRIISQQAEGCAVETLLVLDATTGQNAVNQ 237 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 +F+ VA TG+++TK+DGTA+GG +I I IPV +GVGE I+DL+PF ++ F Sbjct: 238 ARLFNEVADITGIVLTKLDGTAKGGIVISIKNELGIPVKLIGVGEQIDDLQPFDSRSFVT 297 Query: 309 VITGCLDYGEEK 320 + D GEE+ Sbjct: 298 ALFERTDKGEEQ 309 >gi|312902148|ref|ZP_07761408.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0470] gi|311290812|gb|EFQ69368.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0470] Length = 442 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109 LI +D+G + KI E L ++ K +V++ + +I KM+ + N + Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230 Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P+ VIL VGVNGVGKTT IGKL+ + G KV++AA DTFR+ AIDQL +W +R Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 290 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V G D AA+ ++A ++A+A++ DVL++DTAGRL N LM + K+ RV++R Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL V+DATTGQNA+ Q + F TGL++TK+DGTA+GG +I I +PV Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GEGINDLEPF A DF+ Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431 >gi|315154687|gb|EFT98703.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis TX0043] Length = 442 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109 LI +D+G + KI E L ++ K +V++ + +I KM+ + N + Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230 Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P+ VIL VGVNGVGKTT IGKL+ + G KV++AA DTFR+ AIDQL +W +R Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 290 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V G D AA+ ++A ++A+A++ DVL++DTAGRL N LM + K+ RV++R Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL V+DATTGQNA+ Q + F TGL++TK+DGTA+GG +I I +PV Sbjct: 351 PDAPHEVLLVVDATTGQNAMMQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GEGINDLEPF A DF+ Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431 >gi|229098316|ref|ZP_04229263.1| Cell division protein ftsY [Bacillus cereus Rock3-29] gi|229104409|ref|ZP_04235078.1| Cell division protein ftsY [Bacillus cereus Rock3-28] gi|229117333|ref|ZP_04246711.1| Cell division protein ftsY [Bacillus cereus Rock1-3] gi|228666233|gb|EEL21697.1| Cell division protein ftsY [Bacillus cereus Rock1-3] gi|228679107|gb|EEL33315.1| Cell division protein ftsY [Bacillus cereus Rock3-28] gi|228685214|gb|EEL39145.1| Cell division protein ftsY [Bacillus cereus Rock3-29] Length = 332 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 121/306 (39%), Positives = 192/306 (62%), Gaps = 12/306 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K++ ++ + K G T + + D++ R++D+ EELE++LI +D+GV+ Sbjct: 12 EKISKQTDTVTEKFKHGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVST 71 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115 +++++L + +++ + +V +I + L+ + K + DFS+ + V+L Sbjct: 72 VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLVGIYKG-DSDFSNEINMQEDQLTVVL 127 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGKL+ + G V+LAAGDTFR+ AI+QL++W DR + + G Sbjct: 128 FVGVNGVGKTTTIGKLAHRFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 187 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ Y+A + A+A+KVDVL+ DTAGRL N LM + K+ RV++R P APH VL Sbjct: 188 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 247 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DATTGQN L Q + F TG+++TK+DGTA+GG ++ I +PV F+G+GE + Sbjct: 248 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 307 Query: 296 NDLEPF 301 +DL+ F Sbjct: 308 DDLQQF 313 >gi|312278746|gb|ADQ63403.1| Signal recognition particle-docking protein FtsY [Streptococcus thermophilus ND03] Length = 463 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 125/316 (39%), Positives = 185/316 (58%), Gaps = 12/316 (3%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 K +E + R L K + +L E + RR+D+ E+LE++LI SD+GV VA Sbjct: 154 KTETEQEKYNRTLKKTRTGFAARLNEFFANF---RRVDEEFFEQLEEILILSDVGVNVAT 210 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPHVILVVGV 119 ++ E+L RY + + D+ LI + L+ + + + +F VIL VGV Sbjct: 211 QLTEDL---RYEARLENVKKTEDLQRLIIEKLVDIYEKDDVYEEQINFQDGLTVILFVGV 267 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+ K G VML A DTFR+ A+ QL W R V +D A Sbjct: 268 NGVGKTTSIGKLANKYKQEGKNVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGAEKADPA 327 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++ ++A A+ VDVL+IDTAGRL N LMA + K+ R++KR+ P APH L LDA Sbjct: 328 SVVFDGMEKALAEGVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETLLALDA 387 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNAL Q + F + TGL++TK+DG+A+GG ++ I IPV +G GE I+D+ Sbjct: 388 STGQNALNQAKEFSKITPLTGLVLTKLDGSAKGGVVLAIRQELDIPVKLIGFGEKIDDIG 447 Query: 300 PFVAKDF-SAVITGCL 314 F +++F +++TG + Sbjct: 448 EFHSEEFMQSLLTGLV 463 >gi|16078658|ref|NP_389477.1| signal recognition particle (docking protein) [Bacillus subtilis subsp. subtilis str. 168] gi|221309470|ref|ZP_03591317.1| signal recognition particle (docking protein) [Bacillus subtilis subsp. subtilis str. 168] gi|221313795|ref|ZP_03595600.1| signal recognition particle (docking protein) [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318719|ref|ZP_03600013.1| signal recognition particle (docking protein) [Bacillus subtilis subsp. subtilis str. JH642] gi|221322990|ref|ZP_03604284.1| signal recognition particle (docking protein) [Bacillus subtilis subsp. subtilis str. SMY] gi|321315361|ref|YP_004207648.1| signal recognition particle-docking protein FtsY [Bacillus subtilis BSn5] gi|33517363|sp|P51835|FTSY_BACSU RecName: Full=Cell division protein ftsY homolog gi|2633967|emb|CAB13468.1| signal recognition particle (docking protein) [Bacillus subtilis subsp. subtilis str. 168] gi|291484146|dbj|BAI85221.1| signal recognition particle, docking protein [Bacillus subtilis subsp. natto BEST195] gi|320021635|gb|ADV96621.1| signal recognition particle-docking protein FtsY [Bacillus subtilis BSn5] Length = 329 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 126/305 (41%), Positives = 185/305 (60%), Gaps = 10/305 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K+ ++ S K G T + + D++S R++D+ EELE++LI +D+G Sbjct: 9 EKITKQTDSVSEKFKDGLEKTRNSFQNKVNDLVSRYRKVDEDFFEELEEVLISADVGFTT 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH------RPHVILV 116 ++++EL K+ K ++Q +V +I + L+ + + S R +VIL+ Sbjct: 69 VMELIDEL--KKEVKRRNIQDP-KEVQSVISEKLVEIYNSGDEQISELNIQDGRLNVILL 125 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGKL+ KM G V+LAAGDTFR+ AI+QL++W +RT + GS Sbjct: 126 VGVNGVGKTTTIGKLAHKMKQEGKSVVLAAGDTFRAGAIEQLEVWGERTGVPVIKQTAGS 185 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D AA+ Y+A A+A+ DVLI DTAGRL N LM + K+ RV++R P APH VL Sbjct: 186 DPAAVIYDAVHAAKARNADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPEAPHEVLLA 245 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDATTGQNA+ Q + F TG+ +TK+DGTA+GG ++ I IPV +G+GE ++ Sbjct: 246 LDATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELHIPVKLVGLGEKVD 305 Query: 297 DLEPF 301 DL+ F Sbjct: 306 DLQEF 310 >gi|255974286|ref|ZP_05424872.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis T2] gi|256761077|ref|ZP_05501657.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis T3] gi|255967158|gb|EET97780.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis T2] gi|256682328|gb|EEU22023.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis T3] Length = 353 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109 LI +D+G + KI E L ++ K +V++ + +I KM+ + N + Sbjct: 84 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 141 Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P+ VIL VGVNGVGKTT IGKL+ + G KV++AA DTFR+ AIDQL +W +R Sbjct: 142 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 201 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V G D AA+ ++A ++A+A++ DVL++DTAGRL N LM + K+ RV++R Sbjct: 202 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 261 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL V+DATTGQNA+ Q + F TGL++TK+DGTA+GG +I I +PV Sbjct: 262 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 321 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GEGINDLEPF A DF+ Sbjct: 322 KLVGLGEGINDLEPFNANDFA 342 >gi|152976213|ref|YP_001375730.1| signal recognition particle-docking protein FtsY [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024965|gb|ABS22735.1| signal recognition particle-docking protein FtsY [Bacillus cytotoxicus NVH 391-98] Length = 329 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 123/308 (39%), Positives = 190/308 (61%), Gaps = 6/308 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K++ ++ + K +G T + + D++ R++D+ EELE++LI +D+GV Sbjct: 9 EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILISADVGVTT 68 Query: 63 AQKIVEEL---LTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118 +++++L + +R +D VQ V+ + I+K S N + VIL VG Sbjct: 69 VMELIDQLKDEVKRRNIQDPKEVQAVISEKLIDIYKGEEGFSNEINMQ-QDQLTVILFVG 127 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNGVGKTT IGK++ K G V+LAAGDTFR+ AI+QL++W +R + + GSD Sbjct: 128 VNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGNRVGVEVIKQGSGSDP 187 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ Y+A + A+A+KVDVL+ DTAGRL N LM + K+ RV++R P APH VL V+D Sbjct: 188 AAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREIPGAPHEVLLVID 247 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 ATTGQN L Q + F TG+++TK+DGTA+GG ++ I +PV F+G+GE ++DL Sbjct: 248 ATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDL 307 Query: 299 EPFVAKDF 306 + F + + Sbjct: 308 QQFQPEQY 315 >gi|262196884|ref|YP_003268093.1| signal recognition particle-docking protein FtsY [Haliangium ochraceum DSM 14365] gi|262080231|gb|ACY16200.1| signal recognition particle-docking protein FtsY [Haliangium ochraceum DSM 14365] Length = 377 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 114/306 (37%), Positives = 180/306 (58%), Gaps = 6/306 (1%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L G A T + + + +++D V +ELE +L +DIG A + + + + Sbjct: 73 RLRDGLARTRGGFVARLGKLFARKQIDADVLDELEQVLFTADIGPKTADTLFQSIKARLS 132 Query: 76 AKDVSVQRVLYDVSELIHKMLMPL---SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 +++ ++ SE+ + L L + P + H+P V+L +GVNGVGKTT IGKL+ Sbjct: 133 KQELDDPEAVW--SEIRERSLAILDVDTPPLTFS-EHKPFVLLTIGVNGVGKTTTIGKLA 189 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 K+ G +V+L AGDTFR+AA++QL+IW +R A V + G D +++ ++ K+ + Sbjct: 190 AKLGAEGKRVLLGAGDTFRAAAVEQLQIWGERADAPVVTGKSGGDPSSVLFDTIKRGVDE 249 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 K DV+I DTAGRLH LM + K+ RV ++ P APH VLDATTGQNA++Q +MF Sbjct: 250 KFDVVICDTAGRLHTKVDLMDELKKVGRVCEKAMPGAPHETWLVLDATTGQNAIQQAQMF 309 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 TG+++TK+DGTA+GG ++ I +PV ++G+GE ++DL F A+ F + Sbjct: 310 KQAMNITGIVLTKLDGTAKGGVILGICHELAVPVRYIGIGESVSDLREFDARAFVDALYA 369 Query: 313 CLDYGE 318 D E Sbjct: 370 NTDAAE 375 >gi|188996328|ref|YP_001930579.1| signal recognition particle-docking protein FtsY [Sulfurihydrogenibium sp. YO3AOP1] gi|188931395|gb|ACD66025.1| signal recognition particle-docking protein FtsY [Sulfurihydrogenibium sp. YO3AOP1] Length = 304 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 115/296 (38%), Positives = 186/296 (62%), Gaps = 2/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ K+ KG T +L EG + I R++D+ + E++E +L+++D+GV Q+I++ L Sbjct: 4 SFFEKVKKGLEKTKKQLAEGFSKISFGRKIDESLFEDIEAVLLKADVGVKATQEIIQFLR 63 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + + ++ + L ++ E I+ +L + +P V+L +G+NG GKTT +GK Sbjct: 64 EESKKRKITEGQQLKELLKEKIYDILKDCEGRLTF-LGEKPDVLLFLGINGSGKTTTVGK 122 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + G V+LAA DTFR+AAIDQL++WA+R V + G+D +A+ ++A A+ Sbjct: 123 LAYMLKQDGKSVVLAAADTFRAAAIDQLEVWANRVGVRIVKHQPGADPSAVVFDAINSAK 182 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 AK D++I+DTAGRLH LM + K+ + + + + P L VLD T GQN++ Q + Sbjct: 183 AKGDDIVIVDTAGRLHTKEHLMKELQKIKKTIAKFSENQPVETLLVLDGTIGQNSINQAK 242 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F +G+I+TK+DGT++GG +IPI KIP+ F+GVGEGI+DL+PF AK+F Sbjct: 243 TFKEATDVSGIIITKLDGTSKGGAIIPICKDLKIPIKFIGVGEGIDDLQPFDAKEF 298 >gi|138894715|ref|YP_001125168.1| Signal recognition particle-docking protein FtsY [Geobacillus thermodenitrificans NG80-2] gi|196247666|ref|ZP_03146368.1| signal recognition particle-docking protein FtsY [Geobacillus sp. G11MC16] gi|134266228|gb|ABO66423.1| Signal recognition particle-docking protein FtsY [Geobacillus thermodenitrificans NG80-2] gi|196212450|gb|EDY07207.1| signal recognition particle-docking protein FtsY [Geobacillus sp. G11MC16] Length = 329 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 127/300 (42%), Positives = 188/300 (62%), Gaps = 12/300 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K +G + T L + D+I+ R++D+ EELE++LI +D+GV ++V+EL + Sbjct: 21 KFREGLSKTRDSLAGKVNDLIARYRKVDEEFFEELEEILIAADVGVTTVMELVDELKMEV 80 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF--------SHRPHVILVVGVNGVGKTT 126 +++ + DV I + L+ + + D ++ VIL VGVNGVGKTT Sbjct: 81 KRRNIQDSAQMRDV---IAEKLIDIYRAGADDSELSALNIQTNGLTVILFVGVNGVGKTT 137 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+ K+ G V+LAAGDTFR+ AI+QL++W +R D + GSD AA+ Y+A Sbjct: 138 TIGKLAHKLKSEGKSVLLAAGDTFRAGAIEQLEVWGERVGVDVIKQTAGSDPAAVMYDAI 197 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+A+ VDVL+ DTAGRL N LM + K+ RV+ R P APH VL VLDATTGQNA+ Sbjct: 198 QAAKARGVDVLLCDTAGRLQNKVNLMKELEKVKRVISREIPGAPHEVLLVLDATTGQNAM 257 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++F TG+++TK+DGTA+GG ++ I IPV F+G+GE ++DL+PF A+ + Sbjct: 258 SQAKLFKEATDVTGIVLTKLDGTAKGGIVLAIRNELAIPVKFVGLGEKMDDLQPFDAEKY 317 >gi|299144130|ref|ZP_07037210.1| signal recognition particle-docking protein FtsY [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518615|gb|EFI42354.1| signal recognition particle-docking protein FtsY [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 410 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 129/307 (42%), Positives = 186/307 (60%), Gaps = 22/307 (7%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 LS +KL +G T ++ I I+ S ++DD + E+LED+LI +DIG+ K+++ Sbjct: 109 LSIFQKLKQGLTKTRHEMGVKINTILGSYVKIDDEMLEDLEDILISADIGMETTMKLIDN 168 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWDFSHR-----PHVILVVGV 119 L ++ +Q + D + M+ PL K N + P +ILVVGV Sbjct: 169 L------RNTIIQEKINDPN-----MVKPLLKEEVKKLMNDSLDSKIKKESPTIILVVGV 217 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKLS K+ G KV++AA DTFR+AAIDQLK W DR + D + G+D A Sbjct: 218 NGVGKTTTIGKLSSKLKMEGNKVLIAAADTFRAAAIDQLKTWGDRANVDVISHNEGADPA 277 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ ++ A+++ D+LI DTAGRLHN + LM + K+ RV+ R P+A L VLDA Sbjct: 278 AVIFDGITAAKSRNSDILICDTAGRLHNKANLMKELEKINRVIDREYPNANRETLLVLDA 337 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNA+ Q + F V +G+++TK+DGTA+GG +I + +IP+ +GVGEGI+DL+ Sbjct: 338 TTGQNAMNQAKTFKEVCSISGIVLTKLDGTAKGGVVIALQSELQIPIKLVGVGEGIDDLQ 397 Query: 300 PFVAKDF 306 F F Sbjct: 398 EFELNSF 404 >gi|256618148|ref|ZP_05474994.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis ATCC 4200] gi|256597675|gb|EEU16851.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis ATCC 4200] Length = 331 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109 LI +D+G + KI E L ++ K +V++ + +I KM+ + N + Sbjct: 62 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 119 Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P+ VIL VGVNGVGKTT IGKL+ + G KV++AA DTFR+ AIDQL +W +R Sbjct: 120 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 179 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V G D AA+ ++A ++A+A++ DVL++DTAGRL N LM + K+ RV++R Sbjct: 180 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 239 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL V+DATTGQNA+ Q + F TGL++TK+DGTA+GG +I I +PV Sbjct: 240 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 299 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GEGINDLEPF A DF+ Sbjct: 300 KLVGLGEGINDLEPFNANDFA 320 >gi|288926975|ref|ZP_06420871.1| signal recognition particle-docking protein FtsY [Prevotella buccae D17] gi|315608918|ref|ZP_07883890.1| cell division protein FtsY [Prevotella buccae ATCC 33574] gi|288336258|gb|EFC74643.1| signal recognition particle-docking protein FtsY [Prevotella buccae D17] gi|315249298|gb|EFU29315.1| cell division protein FtsY [Prevotella buccae ATCC 33574] Length = 318 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 114/257 (44%), Positives = 164/257 (63%), Gaps = 7/257 (2%) Query: 56 SDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMPLSKP--FNWDF--SH 109 SD+GV K++ + +R A+D VS + + + I +L + NWD H Sbjct: 55 SDVGVDTTLKVISRI-EERVARDKYVSTGELNGILRDEIAALLSENNSDDNGNWDLPADH 113 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 RP+VILVVGVNGVGKTT IGKL+ + AG KV L A DTFR+AA++Q+ IW +R Sbjct: 114 RPYVILVVGVNGVGKTTTIGKLAYQFKKAGKKVFLGAADTFRAAAVEQISIWGERVGVTV 173 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V ++G+D A++A++ + A+A DV++IDTAGRLHN LM + K+ V+K++ P A Sbjct: 174 VKQQMGADPASVAFDTLQSAKANGADVVLIDTAGRLHNKVGLMNELKKIKEVMKKVLPEA 233 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P V+ VLD +TGQNA Q + F AV T L +TK+DGTA+GG +I I K+PV ++ Sbjct: 234 PDEVMLVLDGSTGQNAFEQAKQFSAVTNITSLAITKLDGTAKGGVVIGISDQLKVPVKYI 293 Query: 290 GVGEGINDLEPFVAKDF 306 G+GEG+ DL+ F ++F Sbjct: 294 GLGEGMEDLQLFDKREF 310 >gi|289435146|ref|YP_003465018.1| cell division ABC transporter, substrate-binding protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171390|emb|CBH27934.1| cell division ABC transporter, substrate-binding protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313637356|gb|EFS02837.1| signal recognition particle-docking protein FtsY [Listeria seeligeri FSL S4-171] Length = 328 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 128/310 (41%), Positives = 191/310 (61%), Gaps = 12/310 (3%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63 K+ ++ S K G + T I ++++ R++D+ EELE++LI +D+G Sbjct: 10 KITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFETV 69 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VILV 116 ++VE L + +++S + DV E+I + L+ + + + + H VIL Sbjct: 70 MELVEALRREVQLRNISDPK---DVQEVIVEKLVDIYQG-DQEEEETLHIEKDGLTVILF 125 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGK++ + G KVMLAAGDTFR+ AI+QL++W +RT D + GS Sbjct: 126 VGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIEQLEVWGERTGVDVIKQAEGS 185 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D AA+ ++A + A+A+K D+L+ DTAGRL N LM + K+ RV+ R P+APH VL V Sbjct: 186 DPAAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLLV 245 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDATTGQNA Q + F TG+I+TK+DGTA+GG +I I IPV F+G+GE ++ Sbjct: 246 LDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELHIPVKFVGLGEQMD 305 Query: 297 DLEPFVAKDF 306 DL+ F A ++ Sbjct: 306 DLQAFDANEY 315 >gi|256854769|ref|ZP_05560133.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis T8] gi|256962932|ref|ZP_05567103.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis HIP11704] gi|257080503|ref|ZP_05574864.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis E1Sol] gi|257083239|ref|ZP_05577600.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis Fly1] gi|257088209|ref|ZP_05582570.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis D6] gi|257091334|ref|ZP_05585695.1| cell division transporter substrate-binding protein ftsY [Enterococcus faecalis CH188] gi|257417940|ref|ZP_05594934.1| cell division transporter substrate-binding protein ftsY [Enterococcus faecalis T11] gi|256710329|gb|EEU25373.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis T8] gi|256953428|gb|EEU70060.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis HIP11704] gi|256988533|gb|EEU75835.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis E1Sol] gi|256991269|gb|EEU78571.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis Fly1] gi|256996239|gb|EEU83541.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis D6] gi|257000146|gb|EEU86666.1| cell division transporter substrate-binding protein ftsY [Enterococcus faecalis CH188] gi|257159768|gb|EEU89728.1| cell division transporter substrate-binding protein ftsY [Enterococcus faecalis T11] Length = 331 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109 LI +D+G + KI E L ++ K +V++ + +I KM+ + N + Sbjct: 62 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 119 Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P+ VIL VGVNGVGKTT IGKL+ + G KV++AA DTFR+ AIDQL +W +R Sbjct: 120 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 179 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V G D AA+ ++A ++A+A++ DVL++DTAGRL N LM + K+ RV++R Sbjct: 180 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 239 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL V+DATTGQNA+ Q + F TGL++TK+DGTA+GG +I I +PV Sbjct: 240 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 299 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GEGINDLEPF A DF+ Sbjct: 300 KLVGLGEGINDLEPFNANDFA 320 >gi|284040192|ref|YP_003390122.1| signal recognition particle-docking protein FtsY [Spirosoma linguale DSM 74] gi|283819485|gb|ADB41323.1| signal recognition particle-docking protein FtsY [Spirosoma linguale DSM 74] Length = 318 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 116/278 (41%), Positives = 169/278 (60%), Gaps = 6/278 (2%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYD--V 88 ++ +D+ V +E+E++LI SD+GV KI+ E + +Y + R+L + Sbjct: 34 VVGKSTVDEDVLDEVENVLISSDVGVETTVKIIRRIEERVARDKYVGTDELDRILREEIA 93 Query: 89 SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 + L + ++ F +P+VI+VVGVNGVGKTT IGKL+ + G KV+L AGD Sbjct: 94 ALLSDNNTVDVADDFALPAGIKPYVIMVVGVNGVGKTTTIGKLAAQFHKRGKKVVLGAGD 153 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+AA+DQLK+W +R + + +D +A+A++A K+A DV+IIDTAGRLH Sbjct: 154 TFRAAAVDQLKLWGERVGVPVISHGMNTDPSAVAFDAVKKATEIGADVVIIDTAGRLHTK 213 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM + K+ RV+++ APH VL VLD +TGQNA Q F T L +TK+DG Sbjct: 214 INLMNELTKIKRVMQKFTSEAPHEVLLVLDGSTGQNAFIQATEFTKATEVTALAITKLDG 273 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TA+GG +I I KIPV ++GVGE I+DL+ F +F Sbjct: 274 TAKGGVVIGISDQFKIPVKYIGVGEKIDDLQTFNKMEF 311 >gi|194333177|ref|YP_002015037.1| signal recognition particle-docking protein FtsY [Prosthecochloris aestuarii DSM 271] gi|194310995|gb|ACF45390.1| signal recognition particle-docking protein FtsY [Prosthecochloris aestuarii DSM 271] Length = 315 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 127/308 (41%), Positives = 190/308 (61%), Gaps = 12/308 (3%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV----AVAQKIVE 68 + +L G T +++ I+ + R +D+ EELE++LI +D+GV ++ +I E Sbjct: 9 LSRLKDGLTKTRETIRDNISRLTQGRTEIDEEFLEELENILIAADVGVETTLSIVDRITE 68 Query: 69 ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNWDFS--HRPHVILVVGVNGVGK 124 + Y + + +L V + +ML+ S+ P ++D S +P+VIL+VGVNGVGK Sbjct: 69 RAKEETYRSEDELNNMLLQV---MQEMLLDASEDHPVDFDASLPAKPYVILIVGVNGVGK 125 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT I KL+ +G KVM+AA DTFR+AA++QL+IWADR V G+D A++ ++ Sbjct: 126 TTSIAKLAHNYHKSGKKVMIAAADTFRAAAVEQLQIWADRAGVPMVSQGQGADPASVVFD 185 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A A A++ DV+++DTAGRLHN + LM + K++RV K+ P APH VL VLD TTGQN Sbjct: 186 AVSSAVAREADVVLVDTAGRLHNKAYLMEELAKIMRVAKKKVPEAPHEVLLVLDGTTGQN 245 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ Q F TGLI+TK+DGTA+GG ++ I +PV ++GVGE I+DL+ F Sbjct: 246 AVSQAREFTKCVNVTGLIITKLDGTAKGGIVLSISRDLHLPVKYIGVGEKIDDLQIFDRS 305 Query: 305 DFSAVITG 312 F + G Sbjct: 306 KFVGALMG 313 >gi|146329515|ref|YP_001209772.1| signal recognition particle FtsY [Dichelobacter nodosus VCS1703A] gi|50262050|gb|AAT72765.1| putative signal recognition receptor [Dichelobacter nodosus] gi|146232985|gb|ABQ13963.1| signal recognition particle FtsY [Dichelobacter nodosus VCS1703A] Length = 450 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 116/258 (44%), Positives = 169/258 (65%), Gaps = 8/258 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFS 108 L+ +D G+ + +KI+ + K K+++ VQ+ + D + ++L P +P + Sbjct: 189 LLTADCGIEITEKIIAHIKDKMNRKELADSDAVQKAVAD---YMIELLTPYEQPLCVE-K 244 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 H+P VIL+ G+NG GKTT IGKLS ++ G K+MLAA DTFR+AA++QL+ W +R Sbjct: 245 HQPFVILMAGINGAGKTTTIGKLSHRLQQEGKKIMLAAADTFRAAAVEQLQTWGERHHIP 304 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + + G+DAA++AY+A + AQA+K+DVLIIDTAGRLH LM + K+ RVL++LD Sbjct: 305 VIAQKTGADAASVAYDALQSAQARKMDVLIIDTAGRLHTQDHLMDELKKVKRVLQKLDDK 364 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 PH L V+DA GQNAL+Q FH G GL++TK+DG+A+GG L I K+P+ F Sbjct: 365 VPHETLLVIDAGNGQNALKQALSFHQDIGVDGLVITKLDGSAKGGILFAITEKLKVPIRF 424 Query: 289 LGVGEGINDLEPFVAKDF 306 +GVGE +DL F AK+F Sbjct: 425 VGVGERSDDLHAFNAKNF 442 >gi|310778343|ref|YP_003966676.1| signal recognition particle-docking protein FtsY [Ilyobacter polytropus DSM 2926] gi|309747666|gb|ADO82328.1| signal recognition particle-docking protein FtsY [Ilyobacter polytropus DSM 2926] Length = 413 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 112/269 (41%), Positives = 173/269 (64%), Gaps = 6/269 (2%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL 99 +DD + E+LE++LI+SDIG+ + KIV L + ++ + + +Y V +++ L+ Sbjct: 142 IDDEMYEDLEEMLIQSDIGMDMTLKIVGALEKEVRSRGIKDPKEVYGVLKDVMENFLIEE 201 Query: 100 SKPFNWDFSHRP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 + +P +VILVVGVNGVGKTT IGK++ K++ G KV++ AGDTFR+AAI+Q Sbjct: 202 ENELK---TEKPGLNVILVVGVNGVGKTTTIGKIASKLTKEGKKVIVGAGDTFRAAAIEQ 258 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ W R A+ + + G+D A+ ++ K A+ + DV IIDTAGRLHN + LM + K Sbjct: 259 LEEWTIRAGAEIIKHQQGTDPGAVVFDTLKAAENRNADVAIIDTAGRLHNKNNLMKELEK 318 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + R++++ + + + V+D TTGQN L Q ++F+ V TG I+TK+DGTA+GG + Sbjct: 319 INRIIEKHVGDSSYESILVIDGTTGQNGLNQAKVFNEVTKLTGFIVTKLDGTAKGGIVFA 378 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 I K P+ F+GVGEGI DL PF K++ Sbjct: 379 ISEELKKPIKFIGVGEGIEDLRPFKPKEY 407 >gi|257420452|ref|ZP_05597442.1| signal recognition particle-docking protein ftsY [Enterococcus faecalis X98] gi|257162276|gb|EEU92236.1| signal recognition particle-docking protein ftsY [Enterococcus faecalis X98] Length = 331 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109 LI +D+G + KI E L ++ K +V++ + +I KM+ + N + Sbjct: 62 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 119 Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P+ VIL VGVNGVGKTT IGKL+ + G KV++AA DTFR+ AIDQL +W +R Sbjct: 120 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 179 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V G D AA+ ++A ++A+A++ DVL++DTAGRL N LM + K+ RV++R Sbjct: 180 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 239 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL V+DATTGQNA+ Q + F TGL++TK+DGTA+GG +I I +PV Sbjct: 240 PDAPHEVLLVVDATTGQNAMMQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 299 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GEGINDLEPF A DF+ Sbjct: 300 KLVGLGEGINDLEPFNANDFA 320 >gi|257417223|ref|ZP_05594217.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis AR01/DG] gi|257159051|gb|EEU89011.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis ARO1/DG] Length = 331 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109 LI +D+G + KI E L ++ K +V++ + +I KM+ + N + Sbjct: 62 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINI 119 Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P+ VIL VGVNGVGKTT IGKL+ + G KV++AA DTFR+ AIDQL +W +R Sbjct: 120 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 179 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V G D AA+ ++A ++A+A++ DVL++DTAGRL N LM + K+ RV++R Sbjct: 180 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 239 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL V+DATTGQNA+ Q + F TGL++TK+DGTA+GG +I I +PV Sbjct: 240 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 299 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GEGINDLEPF A DF+ Sbjct: 300 KLVGLGEGINDLEPFNANDFA 320 >gi|313892734|ref|ZP_07826315.1| signal recognition particle-docking protein FtsY [Veillonella sp. oral taxon 158 str. F0412] gi|313442665|gb|EFR61076.1| signal recognition particle-docking protein FtsY [Veillonella sp. oral taxon 158 str. F0412] Length = 311 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 120/302 (39%), Positives = 179/302 (59%), Gaps = 9/302 (2%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 + + ++ +G T + + I I ++DD ++LE +++ SD+G + ++ Sbjct: 2 AFGFFDRIKEGLEKTRKSFVKNVESIVIGYAQIDDDFLDDLEAVMLTSDLGPKTTEYLMR 61 Query: 69 ELLTKRYAKDVSVQR---VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 E+ +R + + V+ + + I +ML+ H P VILVVGVNGVGKT Sbjct: 62 EI--RRGVTEGIINNTGDVMPFMEDRITEMLVDQEDEITL---HHPEVILVVGVNGVGKT 116 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T I KL+ + G KV++AAGDTFR+AA DQL IWADR V + G+D AA+ Y+A Sbjct: 117 TTIAKLANYYTKEGKKVIIAAGDTFRAAAADQLSIWADRVGVPIVKHKEGADPAAVVYDA 176 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + A+A+ D++I+DTAGRLH LM + KM RV APH L VLD TTGQNA Sbjct: 177 MEAAKARNADLVIVDTAGRLHTKVNLMEELKKMGRVANNHVEGAPHQTLLVLDGTTGQNA 236 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + Q ++F G+++TK+DGTA+GG +I I +PV ++GVGEG++DL PF AK+ Sbjct: 237 VSQAKLFGQAVPVNGIVVTKLDGTAKGGVVISIKEELGVPVRWIGVGEGMDDLRPFNAKE 296 Query: 306 FS 307 F+ Sbjct: 297 FA 298 >gi|228947566|ref|ZP_04109856.1| Cell division protein ftsY [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123361|ref|ZP_04252565.1| Cell division protein ftsY [Bacillus cereus 95/8201] gi|228660137|gb|EEL15773.1| Cell division protein ftsY [Bacillus cereus 95/8201] gi|228812086|gb|EEM58417.1| Cell division protein ftsY [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 329 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 119/306 (38%), Positives = 192/306 (62%), Gaps = 12/306 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAV 62 +K++ ++ + K +G T + + D++ R++D+ EELE++LI +D+GV+ Sbjct: 9 EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVFRYRKVDEDFFEELEEILIGADVGVST 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115 +++++L + +++ R +V +I + L+ + K + +F++ + V+L Sbjct: 69 VMELIDQLKEEVQRRNIQDPR---EVQAVISEKLIEIYKG-DSNFTNEVNMQKDGLTVVL 124 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGK++ K G V+LAAGDTFR+ AI+QL++W DR + + G Sbjct: 125 FVGVNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ Y+A + A+A+ VDVL+ DTAGRL N LM + K+ RV++R P APH VL Sbjct: 185 SDPAAVMYDAVQAAKARNVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DATTGQN L Q + F TG+++TK+DGTA+GG ++ I +PV F+G+GE + Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304 Query: 296 NDLEPF 301 +DL+ F Sbjct: 305 DDLQQF 310 >gi|295399782|ref|ZP_06809763.1| signal recognition particle-docking protein FtsY [Geobacillus thermoglucosidasius C56-YS93] gi|294978185|gb|EFG53782.1| signal recognition particle-docking protein FtsY [Geobacillus thermoglucosidasius C56-YS93] Length = 330 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 129/305 (42%), Positives = 189/305 (61%), Gaps = 10/305 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K+ ++ S K +G A T + D+I+ R++D+ EELE++LI +D+GV Sbjct: 9 EKITKQTDSVTEKFKQGLAKTRDSFAGRVNDLIARYRKVDEEFFEELEEILIGADVGVTT 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWDFSHRP-HVILV 116 ++V+EL K K ++Q ++ +I + L+ + KP + VIL Sbjct: 69 VMELVDEL--KMEVKRRNIQNP-QEMQAVISEKLVEIYRGGDDKPAELNIQEDGLTVILF 125 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGKL+ K+ G VMLAAGDTFR+ AI+QL++W +R A+ + GS Sbjct: 126 VGVNGVGKTTTIGKLAHKLKSEGKTVMLAAGDTFRAGAIEQLEVWGERVGAEVIKQTAGS 185 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D AA+ Y+A + A+A+ DVL+ DTAGRL N LM + K+ RV++R APH VL V Sbjct: 186 DPAAVIYDAIQAAKARGADVLLCDTAGRLQNKVNLMKELEKVKRVIEREILGAPHEVLLV 245 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDATTGQNA+ Q + F TG+++TK+DGTA+GG ++ I IPV F+G+GE ++ Sbjct: 246 LDATTGQNAMSQAKTFKEATNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKFVGLGEKVD 305 Query: 297 DLEPF 301 DL+PF Sbjct: 306 DLQPF 310 >gi|15615049|ref|NP_243352.1| signal recognition particle (docking protein) [Bacillus halodurans C-125] gi|10175106|dbj|BAB06205.1| signal recognition particle (docking protein) [Bacillus halodurans C-125] Length = 330 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 126/310 (40%), Positives = 188/310 (60%), Gaps = 9/310 (2%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61 +K+++++ K G T + D++ R +D+ EELE++LI +D+GV Sbjct: 8 KEKISTQTTEVTEKFKAGLEKTRDSFAGKMNDLVYKYRSVDEDFFEELEEILIGADVGVT 67 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRP---HVILV 116 +VEEL + +++ + D+ +I + L L + + + +P VILV Sbjct: 68 TVMDLVEELKDEVRRQNIKDSK---DIQPIISEKLAELLEKEGGETEVNLQPAGLSVILV 124 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGKL+ G KV+LAAGDTFR+ AI+QL++W +R D + GS Sbjct: 125 VGVNGVGKTTSIGKLAHMYKQQGKKVILAAGDTFRAGAIEQLEVWGERAGVDVIKQSEGS 184 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D AA+ ++A + A++++ D+LI DTAGRL N LM + K+ RV+ R P APH VL Sbjct: 185 DPAAVMFDAIQAAKSREADILICDTAGRLQNKVNLMKELEKVKRVISREIPGAPHEVLIA 244 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDATTGQNA+ Q + F TG+I+TK+DGTA+GG ++ I IPV F+G+GE I+ Sbjct: 245 LDATTGQNAMSQAKTFKETTDVTGIILTKLDGTAKGGIVLAIRHELDIPVKFVGLGEKID 304 Query: 297 DLEPFVAKDF 306 DL+PF ++ F Sbjct: 305 DLQPFDSEQF 314 >gi|328950293|ref|YP_004367628.1| signal recognition particle-docking protein FtsY [Marinithermus hydrothermalis DSM 14884] gi|328450617|gb|AEB11518.1| signal recognition particle-docking protein FtsY [Marinithermus hydrothermalis DSM 14884] Length = 304 Score = 209 bits (533), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 123/310 (39%), Positives = 178/310 (57%), Gaps = 14/310 (4%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 +SW ++L +G TS + I + + V EELE LI +D+GV Q+I+EE+ Sbjct: 1 MSWFQRLKEGLKKTS----QAIAQAVPWGGDPEEVLEELEFALIAADVGVEATQEILEEV 56 Query: 71 LT--KRYAKDVSVQRVLYDV------SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 K+ ++ Q ++ + ++L P +K + R V+L+VGVNGV Sbjct: 57 RQSGKKDLREAVKQSLVLQLEPDARRAKLRKLGFTPNAKKAVVEPKGR--VVLMVGVNGV 114 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT I KL + G VM AGDTFR+A QL +W +R + GSD ALA Sbjct: 115 GKTTTIAKLGRYYRQHGRSVMFCAGDTFRAAGGAQLGLWGERLGIPVIQGPEGSDPGALA 174 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + +A+ +D+L +DTAGRLH LM + K+ R + + DP P V VLDA TG Sbjct: 175 FDAAQARKARGIDLLFVDTAGRLHTKHNLMEELKKIKRAIDKADPGEPGEVWLVLDAVTG 234 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QN L+Q + FH G TG+I+TK+DGTA+GG L+PIV +P+ F+GVGEG +DL+PF Sbjct: 235 QNGLQQAKRFHEAVGLTGVIVTKLDGTAKGGVLVPIVRELGVPIRFIGVGEGPDDLQPFD 294 Query: 303 AKDFSAVITG 312 A +F + G Sbjct: 295 AGEFVEALLG 304 >gi|238019505|ref|ZP_04599931.1| hypothetical protein VEIDISOL_01374 [Veillonella dispar ATCC 17748] gi|237864204|gb|EEP65494.1| hypothetical protein VEIDISOL_01374 [Veillonella dispar ATCC 17748] Length = 311 Score = 209 bits (533), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 117/276 (42%), Positives = 171/276 (61%), Gaps = 8/276 (2%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR---VLYDVSEL 91 +I ++DD ++LE +++ SD+G + +++E+ +R + + V+ + + Sbjct: 28 VIGYAQIDDDFLDDLEAVMLTSDLGPKTTEYLMKEI--RRGVTEGVINNTGDVMPFMEDR 85 Query: 92 IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 I +ML+ H P VILVVGVNGVGKTT I KL+ + G KV++AAGDTFR Sbjct: 86 ITEMLVDQEDEITL---HHPEVILVVGVNGVGKTTTIAKLANYYTKEGKKVIIAAGDTFR 142 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 +AA DQL IWADR V + G+D AA+ Y+A + A+A+ D++I+DTAGRLH L Sbjct: 143 AAAADQLSIWADRVGVPIVKHKEGADPAAVVYDAMEAAKARNADLVIVDTAGRLHTKVNL 202 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M + KM RV APH L VLD TTGQNA+ Q ++F G+++TK+DGTA+ Sbjct: 203 MEELKKMGRVANNHVEGAPHQTLLVLDGTTGQNAVSQAKLFGQAVPVNGIVVTKLDGTAK 262 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 GG +I I +PV ++GVGEG++DL PF AK+F+ Sbjct: 263 GGVVISIKEELGVPVRWIGVGEGMDDLRPFNAKEFA 298 >gi|329910207|ref|ZP_08275253.1| Signal recognition particle receptor protein FtsY (alpha subunit) [Oxalobacteraceae bacterium IMCC9480] gi|327546237|gb|EGF31273.1| Signal recognition particle receptor protein FtsY (alpha subunit) [Oxalobacteraceae bacterium IMCC9480] Length = 220 Score = 209 bits (532), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 110/218 (50%), Positives = 143/218 (65%), Gaps = 2/218 (0%) Query: 95 MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 ML PL KP H+P V+++ GVNG GKTT IGKL+K + V+LAAGDTFR+AA Sbjct: 1 MLSPLQKPLELG-RHQPLVMMITGVNGAGKTTTIGKLAKHLQANRQSVLLAAGDTFRAAA 59 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 +QL IW +R + + E G D AA+A++A A AKK +V++IDTAGRL LM Sbjct: 60 REQLTIWGERNNVAVIAQESG-DPAAVAFDAVHSAMAKKTNVVMIDTAGRLPTQLHLMEE 118 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + K+ RV+ + P APH +L V+D TGQNAL QV+ F G TGL++TK+DGTA+GG Sbjct: 119 LKKIKRVIAKAMPSAPHEILLVIDGNTGQNALMQVKAFDDALGLTGLVVTKLDGTAKGGV 178 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 L I T IPVYF+GVGE I DL+PF A +F + G Sbjct: 179 LAAIARTRPIPVYFIGVGEQIEDLQPFNADEFVTALLG 216 >gi|269119246|ref|YP_003307423.1| signal recognition particle-docking protein FtsY [Sebaldella termitidis ATCC 33386] gi|268613124|gb|ACZ07492.1| signal recognition particle-docking protein FtsY [Sebaldella termitidis ATCC 33386] Length = 347 Score = 209 bits (532), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 119/295 (40%), Positives = 177/295 (60%), Gaps = 7/295 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 K KGF + KLKE + + + +DD + EELEDLLI+SD+G + +++EEL + Sbjct: 58 KTKKGFFT---KLKE----VFTGKPIDDEMYEELEDLLIQSDLGFDMTLRVIEELEERVK 110 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 V +Y++ + I + + + ++ILVVGVNGVGKTT IGK++ K+ Sbjct: 111 KAKVKDSEEVYEILKQILREKISSENSALDIVDGKLNIILVVGVNGVGKTTSIGKIASKL 170 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 KV++ A DTFR+AAI+QL+ W RT + + GSD A+ ++ A++KK D Sbjct: 171 KQKNKKVIIGAADTFRAAAIEQLEEWGKRTGVEVIKQSHGSDPGAVVFDTISTARSKKYD 230 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 V IIDTAGRLHN S LM + K+ +++ + L V+D+TTGQN L+Q ++F+ + Sbjct: 231 VAIIDTAGRLHNKSDLMKELEKINKIIIQQSGEDNFEKLLVIDSTTGQNGLQQAKLFNEI 290 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +G+I+TK DGTA+GG + I K P+ +LGVGEGI DL F A +F I Sbjct: 291 VDLSGVILTKFDGTAKGGIIFAISDELKKPIKYLGVGEGIEDLREFNADEFVNAI 345 >gi|189499337|ref|YP_001958807.1| signal recognition particle-docking protein FtsY [Chlorobium phaeobacteroides BS1] gi|189494778|gb|ACE03326.1| signal recognition particle-docking protein FtsY [Chlorobium phaeobacteroides BS1] Length = 314 Score = 209 bits (532), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 133/308 (43%), Positives = 187/308 (60%), Gaps = 12/308 (3%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 I +L G T ++E I+ I R +D+ EELE++LI +D+GV IVE + Sbjct: 9 ISRLKDGLTKTRESIRENISRITQGRTDIDESFLEELENILIAADVGVETTLNIVERITE 68 Query: 73 K----RYAKDVSVQRVLYDVSELIHKMLM--PLSKP--FNWDFSHRPHVILVVGVNGVGK 124 K Y + + +L V E +ML+ P S P F+ D +P+VILVVGVNGVGK Sbjct: 69 KAEKETYHSEDELNSMLMKVME---EMLLDTPDSHPVDFDADLPEKPYVILVVGVNGVGK 125 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT I KL+ + AG KV++AA DTFR+AA+ QL+IWADR V +D A++ ++ Sbjct: 126 TTSIAKLAHNYNRAGKKVIIAAADTFRAAAVQQLQIWADRAGVPMVSQGQNADPASVVFD 185 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A A AK DV+++DTAGRLHN S LM + K++RV K+ APH VL VLD TTGQN Sbjct: 186 AVSSAVAKGADVVLVDTAGRLHNKSHLMEELAKIMRVAKKKVAAAPHEVLLVLDGTTGQN 245 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ Q + F +GLI+TK+DG+A+GG ++ I ++PV ++GVGE I+DL+ F Sbjct: 246 AVSQAKEFAKCVQVSGLIVTKLDGSAKGGIVLSISREMELPVKYIGVGEKIDDLQIFDRG 305 Query: 305 DFSAVITG 312 F + G Sbjct: 306 KFVEALLG 313 >gi|46908034|ref|YP_014423.1| cell division ABC transporter substrate-binding protein FtsY [Listeria monocytogenes serotype 4b str. F2365] gi|47093842|ref|ZP_00231586.1| cell division ABC transporter, substrate-binding protein FtsY [Listeria monocytogenes str. 4b H7858] gi|217964045|ref|YP_002349723.1| signal recognition particle-docking protein FtsY [Listeria monocytogenes HCC23] gi|226224406|ref|YP_002758513.1| SRP receptor alpha-subunit [Listeria monocytogenes Clip81459] gi|254826155|ref|ZP_05231156.1| signal recognition particle-docking protein FtsY [Listeria monocytogenes FSL J1-194] gi|254829201|ref|ZP_05233888.1| signal recognition particle-docking protein FtsY [Listeria monocytogenes FSL N3-165] gi|254852711|ref|ZP_05242059.1| signal recognition particle-docking protein FtsY [Listeria monocytogenes FSL R2-503] gi|254933275|ref|ZP_05266634.1| signal recognition particle-docking protein FtsY [Listeria monocytogenes HPB2262] gi|255521156|ref|ZP_05388393.1| SRP receptor alpha-subunit [Listeria monocytogenes FSL J1-175] gi|290893067|ref|ZP_06556056.1| signal recognition particle-docking protein FtsY [Listeria monocytogenes FSL J2-071] gi|300763884|ref|ZP_07073881.1| cell division ABC transporter, substrate-binding protein FtsY [Listeria monocytogenes FSL N1-017] gi|46881304|gb|AAT04600.1| signal recognition particle-docking protein FtsY [Listeria monocytogenes serotype 4b str. F2365] gi|47017783|gb|EAL08572.1| cell division ABC transporter, substrate-binding protein FtsY [Listeria monocytogenes str. 4b H7858] gi|217333315|gb|ACK39109.1| signal recognition particle-docking protein FtsY [Listeria monocytogenes HCC23] gi|225876868|emb|CAS05577.1| Putative SRP receptor alpha-subunit [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258601613|gb|EEW14938.1| signal recognition particle-docking protein FtsY [Listeria monocytogenes FSL N3-165] gi|258606032|gb|EEW18640.1| signal recognition particle-docking protein FtsY [Listeria monocytogenes FSL R2-503] gi|290557427|gb|EFD90952.1| signal recognition particle-docking protein FtsY [Listeria monocytogenes FSL J2-071] gi|293584835|gb|EFF96867.1| signal recognition particle-docking protein FtsY [Listeria monocytogenes HPB2262] gi|293595395|gb|EFG03156.1| signal recognition particle-docking protein FtsY [Listeria monocytogenes FSL J1-194] gi|300515620|gb|EFK42670.1| cell division ABC transporter, substrate-binding protein FtsY [Listeria monocytogenes FSL N1-017] gi|307571385|emb|CAR84564.1| cell division ABC transporter, substrate-binding protein [Listeria monocytogenes L99] gi|328466159|gb|EGF37316.1| signal recognition particle-docking protein FtsY [Listeria monocytogenes 1816] gi|332312244|gb|EGJ25339.1| FtsY [Listeria monocytogenes str. Scott A] Length = 328 Score = 209 bits (532), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 129/310 (41%), Positives = 190/310 (61%), Gaps = 12/310 (3%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63 K+ ++ S K G + T I ++++ R++D+ EELE++LI +D+G Sbjct: 10 KITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFETV 69 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VILV 116 ++V+ L + +++S + DV E+I + L+ + + + H VIL Sbjct: 70 MELVDTLRREVQLRNISDPK---DVQEVIVEKLVEIYQGDEKE-DEALHIEEDGLTVILF 125 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGK++ + G KVMLAAGDTFR+ AIDQL++W +RT D + GS Sbjct: 126 VGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIDQLEVWGERTGVDVIKQAEGS 185 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D AA+ ++A + A+A+K DVL+ DTAGRL N LM + K+ RV+ R P+APH VL V Sbjct: 186 DPAAVMFDAVQAAKARKADVLLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLLV 245 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDATTGQNA Q + F TG+I+TK+DGTA+GG +I I IPV F+G+GE ++ Sbjct: 246 LDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIPVKFVGLGEQMD 305 Query: 297 DLEPFVAKDF 306 DL+ F A ++ Sbjct: 306 DLQAFDANEY 315 >gi|313623285|gb|EFR93527.1| signal recognition particle-docking protein FtsY [Listeria innocua FSL J1-023] Length = 324 Score = 209 bits (532), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 128/310 (41%), Positives = 191/310 (61%), Gaps = 12/310 (3%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63 K+ ++ S K G + T I ++++ R++D+ EELE++LI +D+G Sbjct: 6 KITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFETV 65 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VILV 116 ++V+ L + +++S + DV E+I + L+ + + + + H VIL Sbjct: 66 MELVDTLRREVQLRNISDPK---DVQEVIVEKLVDIYQGDDKE-DETLHIEENGLTVILF 121 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGK++ + G KVMLAAGDTFR+ AIDQL++W +RT D + GS Sbjct: 122 VGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIDQLEVWGERTGVDVIKQAEGS 181 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D AA+ ++A + A+A+K D+L+ DTAGRL N LM + K+ RV+ R P+APH VL V Sbjct: 182 DPAAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLLV 241 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDATTGQNA Q + F TG+I+TK+DGTA+GG +I I IPV F+G+GE ++ Sbjct: 242 LDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIPVKFVGLGEQMD 301 Query: 297 DLEPFVAKDF 306 DL+ F A ++ Sbjct: 302 DLQAFDANEY 311 >gi|222099069|ref|YP_002533637.1| Signal recognition particle-docking protein FtsY [Thermotoga neapolitana DSM 4359] gi|221571459|gb|ACM22271.1| Signal recognition particle-docking protein FtsY [Thermotoga neapolitana DSM 4359] Length = 294 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 130/294 (44%), Positives = 178/294 (60%), Gaps = 9/294 (3%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 L KG T + ++ ++LDD RE+LE+LLI++D+G+ + I+E L Sbjct: 7 LKKGLQKTKDAFFGKVVSLLKGKKLDDETREKLEELLIQADVGIETTEYILERL----EE 62 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136 KD + L + I L++P N P VI VVGVNG GKTT GKL+K + Sbjct: 63 KDGNALEALRETLLEILNFDTALNEPDN-----PPFVITVVGVNGTGKTTSCGKLAKMFA 117 Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196 D G V+LAA DTFR+AAI+QLK+W DR A + G+D AA+A++A A A+ DV Sbjct: 118 DRGKSVVLAAADTFRAAAIEQLKLWGDRVGATVIAHSEGADPAAVAFDAVSHALARNKDV 177 Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256 +IIDTAGRLH LM + K+ RV+K+ P APH VL V+DATTGQN L Q ++F Sbjct: 178 VIIDTAGRLHTKKNLMEELRKVHRVIKKKIPEAPHEVLLVIDATTGQNGLVQAKVFKDAV 237 Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 TG+I+TK+DGTA+GG ++ I IP+ F+GVGE +DL+PF F V+ Sbjct: 238 DVTGIILTKLDGTAKGGIVLAIAKELGIPIKFVGVGEKEDDLKPFDPNAFVEVL 291 >gi|168700596|ref|ZP_02732873.1| cell division protein FtsY [Gemmata obscuriglobus UQM 2246] Length = 304 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 118/286 (41%), Positives = 175/286 (61%), Gaps = 6/286 (2%) Query: 31 GITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 G+ D++ + R+D+ EELE L +D+G IV+ + K+++ + + V Sbjct: 22 GVFDLLRGKGRVDEAFLEELEKRLYLADVGTQATLLIVDRVRQGFRDKEITGEIETF-VK 80 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 + ++L S N+ S P V+++ GVNG GKTT I KL+ ++ G KV+LAA DT Sbjct: 81 AQLRELLTDPSPGLNYQASG-PTVVMIAGVNGSGKTTSIAKLANRLQADGKKVLLAACDT 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+AA++QL +WA R D V +D +A+A++A ++A+A+ DVLI+DTAGRLH + Sbjct: 140 FRAAAVEQLTVWAGRLGCDIVKQGQNADPSAVAHDACEKAKARGFDVLIVDTAGRLHTQT 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 LM + K+ R++ R P APH VL VLDATTGQNAL Q E F TG+I++K+DGT Sbjct: 200 HLMKELEKIHRIVTRQIPGAPHEVLMVLDATTGQNALVQAEQFSKSVKCTGIILSKLDGT 259 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 A+GG + I +PV F+G+GE I D+EPF D A +T + Sbjct: 260 AKGGAVFAIKQKLGLPVKFVGLGEKIEDMEPF---DPDAFVTALFE 302 >gi|116873238|ref|YP_850019.1| cell division ABC transporter, substrate- binding protein FtsY [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742116|emb|CAK21240.1| cell division ABC transporter, substrate-binding protein FtsY [Listeria welshimeri serovar 6b str. SLCC5334] Length = 328 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 117/261 (44%), Positives = 167/261 (63%), Gaps = 9/261 (3%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHR 110 +LI +D+G ++V+ L + +++S + DV E+I + L+ + + N D + Sbjct: 58 ILIGADVGFETVMELVDALRREVQLRNISDPK---DVQEVIVEKLVDIYQGDENEDETLN 114 Query: 111 PH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 VIL VGVNGVGKTT IGK++ + G KVMLAAGDTFR+ AIDQL++W +RT Sbjct: 115 IEENGLTVILFVGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIDQLEVWGERT 174 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 D + GSD AA+ ++A + A+A+K D+L+ DTAGRL N LM + K+ RV+ R Sbjct: 175 GVDVIKQAEGSDPAAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITRE 234 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P+APH VL VLDATTGQNA Q + F TG+I+TK+DGTA+GG +I I IP Sbjct: 235 IPNAPHEVLLVLDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIP 294 Query: 286 VYFLGVGEGINDLEPFVAKDF 306 V F+G+GE ++DL+ F A ++ Sbjct: 295 VKFVGLGEQMDDLQAFDANEY 315 >gi|313886512|ref|ZP_07820228.1| signal recognition particle-docking protein FtsY [Porphyromonas asaccharolytica PR426713P-I] gi|332300308|ref|YP_004442229.1| signal recognition particle-docking protein FtsY [Porphyromonas asaccharolytica DSM 20707] gi|312924058|gb|EFR34851.1| signal recognition particle-docking protein FtsY [Porphyromonas asaccharolytica PR426713P-I] gi|332177371|gb|AEE13061.1| signal recognition particle-docking protein FtsY [Porphyromonas asaccharolytica DSM 20707] Length = 319 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 112/264 (42%), Positives = 164/264 (62%), Gaps = 5/264 (1%) Query: 54 IRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFS 108 + SD+GV KI+ E + +Y ++ +L D V+ L+ + + F + Sbjct: 53 VTSDVGVDTTLKIIKRIEERVARDKYVGTSELKSILRDEVAALLAENGTTDGESFTLPAN 112 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P+VI+VVGVNGVGKTT IGKL+ + G +++L A DTFR+AAI+QL+IW +R Sbjct: 113 AHPYVIMVVGVNGVGKTTTIGKLAYQFKQQGKRIVLGAADTFRAAAIEQLEIWGERVGVP 172 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V ++GSD A++A++ + A A+ DV+IIDTAGRLHN LM + K+ RV+ ++ P Sbjct: 173 VVKQQMGSDPASVAFDTLQSAVAQDADVVIIDTAGRLHNQVSLMNELSKIKRVMAKVVPD 232 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 APH VL VLD +TGQNA Q + F A + L +TK+DGTA+GG +I I K+PV + Sbjct: 233 APHEVLLVLDGSTGQNAFEQAKQFTAATDVSALAITKLDGTAKGGVVIGISDQFKVPVKY 292 Query: 289 LGVGEGINDLEPFVAKDFSAVITG 312 +G+GE I DL+ F ++F I G Sbjct: 293 IGLGEKIEDLQVFRKREFVDSIFG 316 >gi|312906717|ref|ZP_07765717.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis DAPTO 512] gi|312910822|ref|ZP_07769658.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis DAPTO 516] gi|310627365|gb|EFQ10648.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis DAPTO 512] gi|311288845|gb|EFQ67401.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis DAPTO 516] Length = 442 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 117/261 (44%), Positives = 166/261 (63%), Gaps = 8/261 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109 LI +D+G + KI E L ++ K +V++ + +I KM+ + N + Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230 Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P+ VIL VGVNGVGKTT IGKL+ + G KV++AA DTFR+ AIDQL +W +R Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 290 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V G D AA+ ++A ++A+ ++ DVL++DTAGRL N LM + K+ RV++R Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKTEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL V+DATTGQNA+ Q + F TGL++TK+DGTA+GG +I I +PV Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GEGINDLEPF A DF+ Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431 >gi|118602762|ref|YP_903977.1| signal recognition particle-docking protein FtsY [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567701|gb|ABL02506.1| signal recognition particle-docking protein FtsY [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 318 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 107/257 (41%), Positives = 161/257 (62%), Gaps = 9/257 (3%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMP---LSKPFNWDFSH 109 I +DIG+ KI+E + K + LY + + + K+L+ L N F Sbjct: 61 ITADIGINTTDKILESVRKNASRKTLKDTESLYQFLKDTLDKLLIEDNQLKTNINETF-- 118 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 VIL+VGVNG GKTT+IGKL+K + G +MLAAGDTFR+AA++QLKIW +R Sbjct: 119 ---VILIVGVNGAGKTTLIGKLAKSFQNQGKSIMLAAGDTFRAAAVEQLKIWGERNQIPV 175 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G+D+A++ ++A++ AQAK +D+LI DTAGRLH LM + K+ RV+ + + A Sbjct: 176 IAQTTGADSASVIFDAYQSAQAKNIDILIADTAGRLHTQDNLMQELAKIKRVIAKQNADA 235 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH + V+D ++GQNA+ Q F+ +G+ +TK+DGTA+GG L I +P+ ++ Sbjct: 236 PHETMLVIDGSSGQNAINQAREFNKAVVLSGISITKLDGTAKGGVLFAIADELNLPIRYI 295 Query: 290 GVGEGINDLEPFVAKDF 306 GVGEGI+DL+ F +K+F Sbjct: 296 GVGEGIDDLKVFQSKEF 312 >gi|145220378|ref|YP_001131087.1| signal recognition particle-docking protein FtsY [Prosthecochloris vibrioformis DSM 265] gi|145206542|gb|ABP37585.1| signal recognition particle-docking protein FtsY [Chlorobium phaeovibrioides DSM 265] Length = 317 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 128/308 (41%), Positives = 187/308 (60%), Gaps = 12/308 (3%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV----AVAQKIVE 68 + +LT+G T L+E + + R +DD EELE++L+ +D+GV A+ I E Sbjct: 9 LSRLTEGLGKTRETLREKLAVVTKGRTEIDDEFLEELENILVSADVGVETTLAIVDAITE 68 Query: 69 ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNWD--FSHRPHVILVVGVNGVGK 124 T+ Y + + +L D I KMLM + P +D +P+VIL+VGVNG GK Sbjct: 69 RAGTESYRSEDELNGMLMDE---IGKMLMESGEEHPVEFDAPLPAKPYVILIVGVNGAGK 125 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT + KL+ AG KVM+AA DTFR+AA +QL++WA+R + G+D A++ ++ Sbjct: 126 TTSVAKLASNYEKAGKKVMIAAADTFRAAAYEQLQVWAERAGVPLIGQGQGADPASVVFD 185 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A A A+ DV+++DTAGRLHN S LM + K++RV K+ P APH VL VLD TTGQN Sbjct: 186 AVSAAVARNADVVLVDTAGRLHNKSHLMEELAKIMRVAKKKIPEAPHEVLLVLDGTTGQN 245 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A++Q F TG+++TK+DGTA+GG ++ I K+PV ++GVGE I+DL+ F Sbjct: 246 AVQQAREFMKFVHVTGIVVTKLDGTAKGGIVLSISRELKLPVKYIGVGEKIDDLQLFDRS 305 Query: 305 DFSAVITG 312 F + G Sbjct: 306 RFVGALLG 313 >gi|157150948|ref|YP_001450086.1| cell division protein FtsY [Streptococcus gordonii str. Challis substr. CH1] gi|157075742|gb|ABV10425.1| cell division protein FtsY [Streptococcus gordonii str. Challis substr. CH1] Length = 529 Score = 209 bits (531), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 116/272 (42%), Positives = 164/272 (60%), Gaps = 6/272 (2%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R +D+ E+LE+LLI SD+GV VA + EEL + ++ L V +I K++ Sbjct: 251 RTVDEDFFEDLEELLITSDVGVQVASNLAEELRYEARLENAKKPDALRKV--IIEKLVDI 308 Query: 99 LSKPFNWD----FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 K ++ F V+L VGVNGVGKTT IGKL+ K G KVML A DTFR+ A Sbjct: 309 YEKDGRYNEKINFQDGLTVMLFVGVNGVGKTTSIGKLAYKYKQEGKKVMLVAADTFRAGA 368 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 + QL W R V D A++ ++ ++AQA+ VD+L+IDTAGRL N LMA Sbjct: 369 VAQLAEWGKRVDVPVVTGPEKCDPASVVFDGMERAQAENVDILMIDTAGRLQNKDNLMAE 428 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + K+ R++KR++P APH LDA+TGQNAL Q + F + TG+++TK+DGTARGG Sbjct: 429 LEKIGRIIKRVNPDAPHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGV 488 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++ I IPV +G GE I+D+ F +++F Sbjct: 489 VLAIRQELDIPVKLIGFGEKIDDIGEFNSENF 520 >gi|269797769|ref|YP_003311669.1| signal recognition particle-docking protein FtsY [Veillonella parvula DSM 2008] gi|282849043|ref|ZP_06258432.1| signal recognition particle-docking protein FtsY [Veillonella parvula ATCC 17745] gi|294793533|ref|ZP_06758670.1| signal recognition particle-docking protein FtsY [Veillonella sp. 3_1_44] gi|269094398|gb|ACZ24389.1| signal recognition particle-docking protein FtsY [Veillonella parvula DSM 2008] gi|282581318|gb|EFB86712.1| signal recognition particle-docking protein FtsY [Veillonella parvula ATCC 17745] gi|294455103|gb|EFG23475.1| signal recognition particle-docking protein FtsY [Veillonella sp. 3_1_44] Length = 311 Score = 209 bits (531), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 117/276 (42%), Positives = 171/276 (61%), Gaps = 8/276 (2%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR---VLYDVSEL 91 +I ++DD ++LE +++ SD+G + +++E+ +R + + V+ + + Sbjct: 28 VIGYAQIDDDFLDDLEAVMLTSDLGPKTTEYLMKEI--RRGVTEGIINHTGDVMPFMEDR 85 Query: 92 IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 I +ML+ H P VILVVGVNGVGKTT I KL+ + G KV++AAGDTFR Sbjct: 86 ITEMLIDQEDEITL---HHPEVILVVGVNGVGKTTTIAKLANYYTKEGKKVIIAAGDTFR 142 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 +AA DQL IWADR V + G+D AA+ Y+A + A+A+ D++I+DTAGRLH L Sbjct: 143 AAAADQLSIWADRVGVPIVKHKEGADPAAVVYDAMEAAKARNADLVIVDTAGRLHTKVNL 202 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M + KM RV APH L VLD TTGQNA+ Q ++F G+++TK+DGTA+ Sbjct: 203 MEELKKMGRVANNHVEGAPHQTLLVLDGTTGQNAVSQAKLFGQAVPVNGIVVTKLDGTAK 262 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 GG +I I +PV ++GVGEG++DL PF AK+F+ Sbjct: 263 GGVVISIKEELGVPVRWIGVGEGMDDLRPFNAKEFA 298 >gi|171464208|ref|YP_001798321.1| signal recognition particle-docking protein FtsY [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193746|gb|ACB44707.1| signal recognition particle-docking protein FtsY [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 296 Score = 209 bits (531), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 124/290 (42%), Positives = 170/290 (58%), Gaps = 12/290 (4%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY- 86 L++ + + S ++D + LE+ LI+SD+G+ ++++ +L ++ S L Sbjct: 4 LRKTLGSLFKSTKIDQSWFDTLEESLIQSDVGLPTTEQLISKLRKAAKSEKASSPEALQA 63 Query: 87 ----DVSELIHKMLMPLSKP-FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 +VS L+ + P P F D + P V LVVGVNG GKTT IGKL + G Sbjct: 64 LLIQEVSSLL-TTIEPSPNPLFTKDKPNTPEVWLVVGVNGAGKTTTIGKLCRLFQSQGKS 122 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 V+LAAGDTFR+AA +QL+ W R D + E G DAAA+A++A A ++K D+LIIDT Sbjct: 123 VLLAAGDTFRAAARNQLQEWGGRNQVDVITQE-GGDAAAVAHDAIHAAISRKNDILIIDT 181 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AGRL LM + K+ RV+ + P APH L VLD TGQN L QV+ FHA G TG+ Sbjct: 182 AGRLATQDHLMEELKKVKRVIDKALPGAPHHTLLVLDGNTGQNGLSQVKAFHAALGLTGI 241 Query: 262 IMTKMDGTARGGGLIPIVVT----HKIPVYFLGVGEGINDLEPFVAKDFS 307 I+TK+DGTA+GG + + T K V LG GEGI DL PF A +S Sbjct: 242 IVTKLDGTAKGGVICALAHTLQEGPKPAVLALGKGEGIEDLAPFTAGQYS 291 >gi|308173558|ref|YP_003920263.1| signal recognition particle [Bacillus amyloliquefaciens DSM 7] gi|307606422|emb|CBI42793.1| signal recognition particle (docking protein) [Bacillus amyloliquefaciens DSM 7] gi|328553509|gb|AEB24001.1| signal recognition particle-docking protein FtsY [Bacillus amyloliquefaciens TA208] gi|328911699|gb|AEB63295.1| signal recognition particle (docking protein) [Bacillus amyloliquefaciens LL3] Length = 329 Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 126/310 (40%), Positives = 189/310 (60%), Gaps = 10/310 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K+ ++ S K G T + +++S R++D+ EELE++LI +D+G Sbjct: 9 EKITKQTDSVSEKFKDGLEKTRNSFSNRVNELVSRYRKVDEDFFEELEEVLIGADVGFTT 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH------RPHVILV 116 ++++EL K+ K ++Q +V +I + L+ + N + S R +VIL+ Sbjct: 69 VMELIDEL--KKEVKLKNIQDP-QEVQSVISEKLVEIYNSGNEEISELNIQDGRLNVILL 125 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGKL+ K+ + G V+LAAGDTFR+ AI+QL++W +RT + GS Sbjct: 126 VGVNGVGKTTTIGKLAHKLKNEGKSVVLAAGDTFRAGAIEQLEVWGERTGVPVIKQAAGS 185 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D AA+ Y+A A+A+ DVLI DTAGRL N LM + K+ RV++R P APH VL Sbjct: 186 DPAAVIYDAVHAAKARGADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPEAPHEVLLA 245 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDATTGQNA+ Q + F TG+ +TK+DGTA+GG ++ I IPV +G+GE ++ Sbjct: 246 LDATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELHIPVKLVGLGEKVD 305 Query: 297 DLEPFVAKDF 306 DL+ F A+ + Sbjct: 306 DLQRFDAESY 315 >gi|94265751|ref|ZP_01289487.1| Cell division transporter substrate-binding protein FtsY [delta proteobacterium MLMS-1] gi|93453726|gb|EAT04104.1| Cell division transporter substrate-binding protein FtsY [delta proteobacterium MLMS-1] Length = 367 Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 115/278 (41%), Positives = 177/278 (63%), Gaps = 2/278 (0%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIH 93 + + +DD + EELE+LLI SD+G A A ++++ + D+S L ++ +L+ Sbjct: 84 FLGRKDIDDELFEELEELLITSDLGAATAMELLDRARARIKRDDLSEPAALREILQQLLL 143 Query: 94 KMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 + L+ +P P VI+V+GVNGVGKTT IGKL+ K +AG +V+L A DTFR+ Sbjct: 144 EYLVKAERPAELVMPESGPFVIMVLGVNGVGKTTTIGKLAWKFKNAGQRVLLVAADTFRA 203 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL+ WA+R + V + G+D +++ Y+AF A+ + DV+I+DTAGRLH LM Sbjct: 204 AAIEQLQAWAERVGVEVVAQQQGADPSSVIYDAFDYARPRDFDVIIVDTAGRLHTKVNLM 263 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + K+ RV+ + P APH V+ V+DATTGQN + Q ++FH +G+ +TK+DGTARG Sbjct: 264 EELRKVKRVMSKKIPGAPHEVMLVIDATTGQNGISQAKLFHQAVDVSGIALTKLDGTARG 323 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 G ++ I IP+ F+G+GE + DL F ++F + I Sbjct: 324 GIVVNISREFNIPIRFIGIGEKMEDLRDFDPREFVSAI 361 >gi|157363112|ref|YP_001469879.1| signal recognition particle-docking protein FtsY [Thermotoga lettingae TMO] gi|157313716|gb|ABV32815.1| signal recognition particle-docking protein FtsY [Thermotoga lettingae TMO] Length = 294 Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 117/297 (39%), Positives = 182/297 (61%), Gaps = 10/297 (3%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + + +L G + L EG++ I+ ++ D + EELE+ L+ +D+G + I+E+L Sbjct: 1 MGFFERLKTGLSRARKALFEGLSQILKGSKISDEILEELEERLLMADVGYPTTEYIIEQL 60 Query: 71 LTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + + +++ ++ D+ K+ P PF VI VVGVNG GKTT + Sbjct: 61 KQSKTNDALETLKEIMIDLLSFDSKLNSPDQPPF---------VITVVGVNGTGKTTTVA 111 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ G V+L A DTFR+AAI+QL+ W +RT + + G+D+AA+A++A A Sbjct: 112 KLAAYFQSTGKTVVLGAADTFRAAAIEQLREWGERTGSTVIYHSEGADSAAVAFDAVSHA 171 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A++ DV+IIDTAGRLH LM + K+ RV+ ++ P APH VL V+DATTGQN L Q Sbjct: 172 KAREKDVVIIDTAGRLHTKKNLMEELKKVHRVIGKVVPGAPHEVLLVIDATTGQNGLVQA 231 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++F + TG+++TK+DGTA+GG + I +P+ F+G+GEG DL+PF AK+F Sbjct: 232 KVFKEMVDVTGIVITKLDGTAKGGISLAIKKELNLPIKFIGIGEGAEDLKPFDAKEF 288 >gi|315282801|ref|ZP_07871126.1| signal recognition particle-docking protein FtsY [Listeria marthii FSL S4-120] gi|313613556|gb|EFR87375.1| signal recognition particle-docking protein FtsY [Listeria marthii FSL S4-120] Length = 325 Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 128/310 (41%), Positives = 190/310 (61%), Gaps = 12/310 (3%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63 K+ ++ S K G + T I ++++ R++D+ EELE++LI +D+G Sbjct: 7 KITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFETV 66 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VILV 116 ++V+ L + +++S + DV E+I + L+ + + + H VIL Sbjct: 67 MELVDTLRREVQLRNISDPK---DVQEVIVEKLVEIYQGDEKE-DEALHIEEDGLTVILF 122 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGK++ + G KVMLAAGDTFR+ AIDQL++W +RT D + GS Sbjct: 123 VGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIDQLEVWGERTGVDVIKQAEGS 182 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D AA+ ++A + A+A+K D+L+ DTAGRL N LM + K+ RV+ R P+APH VL V Sbjct: 183 DPAAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLLV 242 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDATTGQNA Q + F TG+I+TK+DGTA+GG +I I IPV F+G+GE ++ Sbjct: 243 LDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIPVKFVGLGEQMD 302 Query: 297 DLEPFVAKDF 306 DL+ F A ++ Sbjct: 303 DLQAFDANEY 312 >gi|226226848|ref|YP_002760954.1| cell division protein FtsY [Gemmatimonas aurantiaca T-27] gi|226090039|dbj|BAH38484.1| cell division protein FtsY [Gemmatimonas aurantiaca T-27] Length = 309 Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 112/271 (41%), Positives = 169/271 (62%), Gaps = 6/271 (2%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ----RVLYDVSELIHKML 96 +D+G E LE LLI SD GV + +V E+ + +V + + L D + + + Sbjct: 35 VDEGSLEALETLLIESDFGVPTSLALVAEVERRHKRGEVKTEAEFRQALAD--GVANALR 92 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 + P + P V+LV+GVNG GKTT IGKL+ + G +V++ A DTFR+ AID Sbjct: 93 TGNADPAMAMAASGPTVLLVIGVNGAGKTTFIGKLAAQYRAQGKRVLVGAADTFRAGAID 152 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL++WA+R+ A+FV + GSD A++AY+A A+ +D++I+DTAGRLH + LM + Sbjct: 153 QLRVWAERSGAEFVGGKPGSDPASVAYDAVDAGIARNMDLIIVDTAGRLHTSDDLMTELR 212 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 KM RV+ + P APH +L VLD T GQNAL Q F + TG+++TK+DGTA+GG ++ Sbjct: 213 KMHRVIGKRMPEAPHEILLVLDGTIGQNALSQARTFSSAVPVTGVVVTKLDGTAKGGIVV 272 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + +P+ ++GVGE + DLEPF A ++ Sbjct: 273 AVHEALNVPIKYVGVGEQVGDLEPFDADVYA 303 >gi|16800983|ref|NP_471251.1| hypothetical protein lin1917 [Listeria innocua Clip11262] gi|16414418|emb|CAC97147.1| lin1917 [Listeria innocua Clip11262] Length = 328 Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 128/310 (41%), Positives = 190/310 (61%), Gaps = 12/310 (3%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63 K+ ++ S K G + T I ++++ R++D+ EELE++LI +D+G Sbjct: 10 KITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFETV 69 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VILV 116 ++V+ L + +++S + DV E+I + L+ + + + H VIL Sbjct: 70 MELVDTLRREVQLRNISDPK---DVQEVIVEKLVDIYQGDEKE-DETLHIEENGLTVILF 125 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGK++ + G KVMLAAGDTFR+ AIDQL++W +RT D + GS Sbjct: 126 VGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIDQLEVWGERTGVDVIKQAEGS 185 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D AA+ ++A + A+A+K D+L+ DTAGRL N LM + K+ RV+ R P+APH VL V Sbjct: 186 DPAAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLLV 245 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDATTGQNA Q + F TG+I+TK+DGTA+GG +I I IPV F+G+GE ++ Sbjct: 246 LDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIPVKFVGLGEQMD 305 Query: 297 DLEPFVAKDF 306 DL+ F A ++ Sbjct: 306 DLQAFDANEY 315 >gi|239817341|ref|YP_002946251.1| signal recognition particle-docking protein FtsY [Variovorax paradoxus S110] gi|239803918|gb|ACS20985.1| signal recognition particle-docking protein FtsY [Variovorax paradoxus S110] Length = 302 Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 131/309 (42%), Positives = 187/309 (60%), Gaps = 13/309 (4%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 +E W KL G T GI + + ++D+ + EELE L+ +D GV + ++ Sbjct: 3 AERKGWFDKLKTGLRKTG----TGIQAVFVNAQIDEALYEELESALLMADAGVKATEFLL 58 Query: 68 EEL---LTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 ++L + ++ A D + V+R+L D I +L PL KP P VI+V GVNG G Sbjct: 59 DDLRGRVKRQMATDAAQVKRLLADA---ITDLLQPLEKPLVIG-QFTPTVIMVAGVNGAG 114 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+K ++ G V+LAA DTFR+AA +QL +WADR + + V E G D +A+++ Sbjct: 115 KTTSIGKLTKHLASEGASVLLAAADTFRAAAREQLLVWADRNTVEIVSQE-GGDPSAVSF 173 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A +A+ DV+++DTAGRL LM + K+ RV+ + D APH VL V+D TGQ Sbjct: 174 DAVTAGKARGKDVVLVDTAGRLPTQLHLMDELKKIKRVVTKADATAPHEVLLVIDGNTGQ 233 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NAL QV F G TGL++TK+DGTA+GG L I IPVYF+GVGE + DLE F A Sbjct: 234 NALAQVRAFDETLGLTGLVVTKLDGTAKGGVLCAIARERPIPVYFIGVGEKLEDLETFNA 293 Query: 304 KDFSAVITG 312 ++F+ + G Sbjct: 294 REFALALLG 302 >gi|16803843|ref|NP_465328.1| hypothetical protein lmo1803 [Listeria monocytogenes EGD-e] gi|47097386|ref|ZP_00234937.1| cell division ABC transporter, substrate-binding protein FtsY [Listeria monocytogenes str. 1/2a F6854] gi|224500033|ref|ZP_03668382.1| hypothetical protein LmonF1_10299 [Listeria monocytogenes Finland 1988] gi|224501396|ref|ZP_03669703.1| hypothetical protein LmonFR_02555 [Listeria monocytogenes FSL R2-561] gi|254831596|ref|ZP_05236251.1| hypothetical protein Lmon1_09593 [Listeria monocytogenes 10403S] gi|254899500|ref|ZP_05259424.1| hypothetical protein LmonJ_06789 [Listeria monocytogenes J0161] gi|254912361|ref|ZP_05262373.1| cell division ABC transporter [Listeria monocytogenes J2818] gi|254936688|ref|ZP_05268385.1| cell division ABC transporter [Listeria monocytogenes F6900] gi|284802249|ref|YP_003414114.1| hypothetical protein LM5578_2005 [Listeria monocytogenes 08-5578] gi|284995391|ref|YP_003417159.1| hypothetical protein LM5923_1956 [Listeria monocytogenes 08-5923] gi|16411257|emb|CAC99881.1| lmo1803 [Listeria monocytogenes EGD-e] gi|47014234|gb|EAL05216.1| cell division ABC transporter, substrate-binding protein FtsY [Listeria monocytogenes str. 1/2a F6854] gi|258609284|gb|EEW21892.1| cell division ABC transporter [Listeria monocytogenes F6900] gi|284057811|gb|ADB68752.1| hypothetical protein LM5578_2005 [Listeria monocytogenes 08-5578] gi|284060858|gb|ADB71797.1| hypothetical protein LM5923_1956 [Listeria monocytogenes 08-5923] gi|293590342|gb|EFF98676.1| cell division ABC transporter [Listeria monocytogenes J2818] Length = 328 Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 128/310 (41%), Positives = 190/310 (61%), Gaps = 12/310 (3%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63 K+ ++ S K G + T I ++++ R++D+ EELE++LI +D+G Sbjct: 10 KITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFETV 69 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VILV 116 ++V+ L + +++S + DV E+I + L+ + + + H VIL Sbjct: 70 MELVDTLRREVQLRNISDPK---DVQEVIVEKLVEIYQGDEKE-DEALHIEEDGLTVILF 125 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGK++ + G KVMLAAGDTFR+ AIDQL++W +RT D + GS Sbjct: 126 VGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIDQLEVWGERTGVDVIKQAEGS 185 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D AA+ ++A + A+A+K D+L+ DTAGRL N LM + K+ RV+ R P+APH VL V Sbjct: 186 DPAAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLLV 245 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDATTGQNA Q + F TG+I+TK+DGTA+GG +I I IPV F+G+GE ++ Sbjct: 246 LDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIPVKFVGLGEQMD 305 Query: 297 DLEPFVAKDF 306 DL+ F A ++ Sbjct: 306 DLQAFDANEY 315 >gi|311068116|ref|YP_003973039.1| signal recognition particle-docking protein FtsY [Bacillus atrophaeus 1942] gi|310868633|gb|ADP32108.1| signal recognition particle-docking protein FtsY [Bacillus atrophaeus 1942] Length = 329 Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 125/305 (40%), Positives = 189/305 (61%), Gaps = 10/305 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K+ ++ S K +G T ++ + D++S R++D+ EELE++LI +D+G Sbjct: 9 EKITKQTDSVSEKFKEGLEKTRSSFQDKVNDLVSRYRKVDEDFFEELEEVLIGADVGFTT 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH------RPHVILV 116 ++++EL K+ K ++Q +V +I + L+ + + S R +VIL+ Sbjct: 69 VMELIDEL--KKEVKLRNIQDP-QEVQSVISEKLVEIYNSGDEQVSDLNIQVGRLNVILL 125 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGKL+ K+ + G V+LAAGDTFR+ AI+QL++W +RT + GS Sbjct: 126 VGVNGVGKTTTIGKLAHKLKEEGKSVVLAAGDTFRAGAIEQLEVWGERTGVPVIKQAAGS 185 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D AA+ Y+A A+A++ DVLI DTAGRL N LM + K+ RV++R P APH VL Sbjct: 186 DPAAVIYDAVHAAKAREADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPEAPHEVLLA 245 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDATTGQNA+ Q + F TG+ +TK+DGTA+GG ++ I IPV +G+GE ++ Sbjct: 246 LDATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELHIPVKLVGLGEKVD 305 Query: 297 DLEPF 301 DL+ F Sbjct: 306 DLQQF 310 >gi|257125121|ref|YP_003163235.1| signal recognition particle-docking protein FtsY [Leptotrichia buccalis C-1013-b] gi|257049060|gb|ACV38244.1| signal recognition particle-docking protein FtsY [Leptotrichia buccalis C-1013-b] Length = 396 Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 108/256 (42%), Positives = 160/256 (62%), Gaps = 3/256 (1%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHR 110 I+SDIG+ + ++VEEL + K + +YD + + K + + N + + Sbjct: 135 IQSDIGMNMTMQLVEELESSVSRKKLKTSEQIYDELKELLKAKLIYNDEENTKLKLKNGK 194 Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 +++LVVGVNGVGKTT IGK++KK+ D+G KV++ AGDTFR+AAI+Q++ W RT + V Sbjct: 195 LNILLVVGVNGVGKTTSIGKIAKKLKDSGKKVIIGAGDTFRAAAIEQVEEWGKRTGVEVV 254 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 GSD AA+ ++ K A+ + DV I+DTAGRLHN LM + K+ ++++ Sbjct: 255 KQAHGSDPAAVIFDTVKTAKNRGFDVAILDTAGRLHNKRDLMKELEKINKIIREQSGETD 314 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 L V+D+TTGQN L Q +F+ + TG+I+TK DGTA+GG + PI K P+ F+G Sbjct: 315 FETLLVIDSTTGQNGLEQARIFNEIVDLTGIILTKFDGTAKGGIIFPITSELKKPIKFIG 374 Query: 291 VGEGINDLEPFVAKDF 306 VGEGI DL F K+F Sbjct: 375 VGEGIEDLREFDKKEF 390 >gi|28210933|ref|NP_781877.1| signal recognition particle receptor ftsY [Clostridium tetani E88] gi|28203372|gb|AAO35814.1| signal recognition particle receptor ftsY [Clostridium tetani E88] Length = 303 Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 101/196 (51%), Positives = 140/196 (71%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P +ILV+GVNGVGKTT IGK+S K+ + G KV++AAGDTFR+AAI+QL++W+ R D + Sbjct: 103 PEIILVIGVNGVGKTTSIGKMSHKLKNNGFKVLMAAGDTFRAAAIEQLEVWSQRAGVDII 162 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + GSD AA+ +++ + A+A+K DVLI DTAGRLHN LM + K+ R+++R A Sbjct: 163 RQQEGSDPAAVVFDSIQAAKARKTDVLICDTAGRLHNKKNLMDELSKINRIVEREYSEAN 222 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 VLDATTGQNAL+Q + F V G+I+TK+DGTA+GG +I I IPV +G Sbjct: 223 KKTYLVLDATTGQNALQQAKQFTQVCNVDGIILTKLDGTAKGGIVISIKHQLNIPVKLIG 282 Query: 291 VGEGINDLEPFVAKDF 306 VGEGI+DL+ F +++F Sbjct: 283 VGEGIDDLQNFNSREF 298 >gi|296135230|ref|YP_003642472.1| signal recognition particle-docking protein FtsY [Thiomonas intermedia K12] gi|295795352|gb|ADG30142.1| signal recognition particle-docking protein FtsY [Thiomonas intermedia K12] Length = 368 Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 120/301 (39%), Positives = 180/301 (59%), Gaps = 7/301 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W +L G T GI+ + ++D+ + EELE LI +D G+ ++ +L Sbjct: 73 WFNRLRSGLRKTG----SGISGLFGGSKIDEALYEELESALIMADAGMPATTALLADLRR 128 Query: 73 K-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + + A+ + +V +++ + +L PL KP + P V+++VGVNG GKTT IGKL Sbjct: 129 RVKSARAETPAQVRGLLADALADLLSPLQKPLDIG-RQNPTVLMMVGVNGAGKTTTIGKL 187 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++ + A KV+LAAGDTFR+AA +QL W R V S+ G D AA+A++A +A Sbjct: 188 TQHLLRADEKVLLAAGDTFRAAAREQLVAWGQRNQVQ-VISQDGGDPAAVAFDAVSAGKA 246 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +++DV+I+DTAGRL LM + K+ RV + APH +L V+DA GQNAL QV Sbjct: 247 REMDVVIVDTAGRLPTQLHLMEELKKVKRVTAKAMDGAPHEILLVIDANNGQNALAQVRA 306 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F G TGL++TK+DG+A+GG + I +PVYF+GVGE ++DL+ F AK F+ + Sbjct: 307 FDDALGLTGLVITKLDGSAKGGVIAAIARERPVPVYFIGVGESLDDLQTFDAKAFARALV 366 Query: 312 G 312 G Sbjct: 367 G 367 >gi|241890123|ref|ZP_04777421.1| signal recognition particle-docking protein FtsY [Gemella haemolysans ATCC 10379] gi|241863745|gb|EER68129.1| signal recognition particle-docking protein FtsY [Gemella haemolysans ATCC 10379] Length = 353 Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 128/303 (42%), Positives = 180/303 (59%), Gaps = 16/303 (5%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67 ES K KG + + ++ISS R +++ E+LE+LLI+SD+ ++V Sbjct: 33 ESQFVTEKFKKGLKKSRDNFSNALNNLISSYREINEEFFEDLEELLIQSDVSYNTVLELV 92 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---------SKPFNWDFSHRPHVILVVG 118 + Y K S ++ L + SEL ++ L N+ V L VG Sbjct: 93 D------YLKVESQRQNLKEPSELQSMIIEKLVDVYMEGTVKSELNYAPEKELSVFLFVG 146 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNGVGKTT IGKL+ + G KV++AAGDTFR+ AIDQL +WA R+ AD V S G+D+ Sbjct: 147 VNGVGKTTSIGKLAHNLKKEGKKVLIAAGDTFRAGAIDQLDVWAKRSGADIVKSHEGADS 206 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A + A+AK DVL+ DTAGRL N LM + K++RV+K+ P PH VL +D Sbjct: 207 AAIIFDAIQSAKAKGYDVLLCDTAGRLQNKDHLMKELEKIVRVIKKEVPEGPHEVLLTID 266 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 ATTGQN + Q + F V+ TG+I+TK+DGTA+GG +I I IPV +G+GE I+DL Sbjct: 267 ATTGQNGILQAKTFKEVSDVTGVILTKLDGTAKGGIVIAIKKELGIPVKLVGLGENIDDL 326 Query: 299 EPF 301 E F Sbjct: 327 EVF 329 >gi|329767266|ref|ZP_08258793.1| hypothetical protein HMPREF0428_00490 [Gemella haemolysans M341] gi|328836933|gb|EGF86580.1| hypothetical protein HMPREF0428_00490 [Gemella haemolysans M341] Length = 354 Score = 208 bits (530), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 128/303 (42%), Positives = 180/303 (59%), Gaps = 16/303 (5%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67 ES K KG + + ++ISS R +++ E+LE+LLI+SD+ ++V Sbjct: 33 ESQFVTEKFKKGLKKSRDNFSNALNNLISSYREINEEFFEDLEELLIQSDVSYNTVLELV 92 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---------SKPFNWDFSHRPHVILVVG 118 + Y K S ++ L + SEL ++ L N+ V L VG Sbjct: 93 D------YLKVESQRQNLKEPSELQSMIIEKLVDVYMEGTVKSELNYAPEKELSVFLFVG 146 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNGVGKTT IGKL+ + G KV++AAGDTFR+ AIDQL +WA R+ AD V S G+D+ Sbjct: 147 VNGVGKTTSIGKLAHNLKKEGKKVLIAAGDTFRAGAIDQLDVWAKRSGADIVKSHEGADS 206 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A + A+AK DVL+ DTAGRL N LM + K++RV+K+ P PH VL +D Sbjct: 207 AAIIFDAIQSAKAKGYDVLLCDTAGRLQNKDHLMKELEKIVRVIKKEVPEGPHEVLLTID 266 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 ATTGQN + Q + F V+ TG+I+TK+DGTA+GG +I I IPV +G+GE I+DL Sbjct: 267 ATTGQNGILQAKTFKEVSDVTGVILTKLDGTAKGGIVIAIKKELGIPVKLVGLGENIDDL 326 Query: 299 EPF 301 E F Sbjct: 327 EVF 329 >gi|254421607|ref|ZP_05035325.1| signal recognition particle-docking protein FtsY, putative [Synechococcus sp. PCC 7335] gi|196189096|gb|EDX84060.1| signal recognition particle-docking protein FtsY, putative [Synechococcus sp. PCC 7335] Length = 570 Score = 208 bits (530), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 112/314 (35%), Positives = 187/314 (59%), Gaps = 6/314 (1%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +++ E ++W+ KL +G T L + I+ L+D +E+E LL+++D+GVA Sbjct: 257 QISVEEITWLNKLRQGLDKTRRGLVNQLKSIVGQGPLNDEAVDEIEALLLQADVGVAATD 316 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVVGVN 120 KI+ L +K + + + + + L+ ML PL N F+ + L+ GVN Sbjct: 317 KIISALQSKLREETLPPDQAIDYLKSLLRDMLESPLEGKHNLTFTPEKDKLSIWLMTGVN 376 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179 G GKTT IGKL+ + + + ++ A DTFR+AA++Q+K+W DR+ + + + +D A Sbjct: 377 GAGKTTTIGKLAHIATKSEFRCLIGAADTFRAAAVEQVKVWGDRSGVEVIANPGKNTDPA 436 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ ++A A ++ +++L+IDTAGRL N LM + K+ +++ + P A L VLDA Sbjct: 437 AVVFDAISAANSRNIELLLIDTAGRLQNKKNLMDELSKVRKIIDKKAPGANVESLLVLDA 496 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 T GQN LRQ ++F A +G+++TK+DGTARGG + +V +P+ F+G GEGI DL Sbjct: 497 TLGQNGLRQAQVFAEAAQLSGVVLTKLDGTARGGVALAVVEQLGLPIRFIGAGEGIEDLR 556 Query: 300 PFVAKDF-SAVITG 312 PF + +F A+++G Sbjct: 557 PFSSYEFIEALLSG 570 >gi|78189179|ref|YP_379517.1| cell division transporter substrate-binding protein FtsY [Chlorobium chlorochromatii CaD3] gi|78171378|gb|ABB28474.1| signal recognition particle-docking protein FtsY [Chlorobium chlorochromatii CaD3] Length = 317 Score = 208 bits (530), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 128/308 (41%), Positives = 187/308 (60%), Gaps = 12/308 (3%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV----AVAQKIVE 68 + +L +G T L+E ++ I + +DD EELE +L+ +D+GV A+ I E Sbjct: 9 LSRLKEGLEKTRDTLREKLSVITKGKTEIDDEFLEELETILVGADVGVETTLAIVDAITE 68 Query: 69 ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH----RPHVILVVGVNGVGK 124 + Y + + R+L D I +ML S DF +P+VILVVGVNG GK Sbjct: 69 RAKKETYHSETELNRMLIDE---IQQMLQESSDEHPVDFDAPLPAKPYVILVVGVNGAGK 125 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT I KL+ AG KV++AA DTFR+AA +QL+IWADR + G+D A++ ++ Sbjct: 126 TTSIAKLAHNYDQAGKKVIIAAADTFRAAAYEQLQIWADRAGVPMIGQGQGADPASVVFD 185 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A A ++ DV+++DTAGRLHN S LM + K++RV K+ P APH VL VLD TTGQN Sbjct: 186 AVSAAVSRNADVVLVDTAGRLHNKSHLMEELAKIMRVAKKRIPEAPHEVLLVLDGTTGQN 245 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A++Q + F TGL++TK+DGT++GG ++ I K+PV ++GVGE I+DL+ F + Sbjct: 246 AVQQAQEFTKFVQVTGLVVTKLDGTSKGGIVLSISRDLKLPVKYIGVGEKIDDLQLFDRR 305 Query: 305 DFSAVITG 312 +F + G Sbjct: 306 NFVGALLG 313 >gi|315303703|ref|ZP_07874218.1| signal recognition particle-docking protein FtsY [Listeria ivanovii FSL F6-596] gi|313627930|gb|EFR96548.1| signal recognition particle-docking protein FtsY [Listeria ivanovii FSL F6-596] Length = 323 Score = 208 bits (530), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 128/310 (41%), Positives = 191/310 (61%), Gaps = 12/310 (3%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63 K+ ++ S K G + T I ++++ R++D+ EELE++LI +D+G Sbjct: 5 KITQQTDSVTGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFETV 64 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VILV 116 ++VE L + +++S + DV E+I + L+ + + + + H VIL Sbjct: 65 MELVETLRREVQLRNISDPK---DVQEVIVEKLVDIYQG-DEEEEEALHIEKDGLTVILF 120 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGK++ + G KVMLAAGDTFR+ AI+QL++W +RT D + GS Sbjct: 121 VGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIEQLEVWGERTGVDVIKQAEGS 180 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D AA+ ++A + A+A+K D+L+ DTAGRL N LM + K+ RV+ R P+APH VL V Sbjct: 181 DPAAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLLV 240 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDATTGQNA Q + F TG+I+TK+DGTA+GG +I I IPV F+G+GE ++ Sbjct: 241 LDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELHIPVKFVGLGEQMD 300 Query: 297 DLEPFVAKDF 306 DL+ F A ++ Sbjct: 301 DLQAFDANEY 310 >gi|1237016|dbj|BAA10978.1| Srb [Bacillus subtilis] gi|1237019|dbj|BAA08616.1| Srb [Bacillus subtilis] Length = 329 Score = 208 bits (530), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 125/305 (40%), Positives = 184/305 (60%), Gaps = 10/305 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K+ ++ S K G T + + D++S R++D+ EELE++LI +D+G Sbjct: 9 EKITKQTDSVSEKFKDGLEKTRNSFQNKVNDLVSRYRKVDEDFFEELEEVLISADVGFTT 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH------RPHVILV 116 ++++EL K+ K ++Q +V +I + L+ + + S R +VIL+ Sbjct: 69 VMELIDEL--KKEVKRRNIQDP-KEVQSVISEKLVEIYNSGDEQISELNIQDGRLNVILL 125 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGKL+ KM G V+LAAGDTFR+ AI+QL++W +RT + GS Sbjct: 126 VGVNGVGKTTTIGKLAHKMKQEGKSVVLAAGDTFRAGAIEQLEVWGERTGVPVIKQTAGS 185 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D AA+ Y+A A+A+ DVLI DTAGRL N LM + K+ RV++R P PH VL Sbjct: 186 DPAAVIYDAVHAAKARNADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPETPHEVLLA 245 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDATTGQNA+ Q + F TG+ +TK+DGTA+GG ++ I IPV +G+GE ++ Sbjct: 246 LDATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELHIPVKLVGLGEKVD 305 Query: 297 DLEPF 301 DL+ F Sbjct: 306 DLQEF 310 >gi|218291549|ref|ZP_03495423.1| signal recognition particle-docking protein FtsY [Alicyclobacillus acidocaldarius LAA1] gi|218238644|gb|EED05869.1| signal recognition particle-docking protein FtsY [Alicyclobacillus acidocaldarius LAA1] Length = 305 Score = 208 bits (530), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 183/297 (61%), Gaps = 3/297 (1%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 + KG + + + + + RRLDD V EE+E+ LI SD+GV A ++VE + + Sbjct: 6 RFRKGLEKSRAAMADRLLSVFRGRRLDDSVFEEMEETLILSDVGVDTAVELVEAIRREAR 65 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 + + L DV ++ M+ L P + P V+LVVGVNG GKTT IGKL+ Sbjct: 66 RRRIERAEDLPDV--MVDVMVEFLGPPAEMAENPDGPTVVLVVGVNGAGKTTTIGKLAHA 123 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G +V+LAA DTFR+AAI+QL +W +R D V GSD AA+ Y+A + A+A++ Sbjct: 124 YKSQGKRVILAAADTFRAAAIEQLMVWGERVGVDVVRHAQGSDPAAVVYDAIQAAKARRC 183 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D++I DTAGRL N + LM + K+ +V +R P APH VL V+D TTGQN L Q +F Sbjct: 184 DLVICDTAGRLQNKAHLMNELAKIRKVAERELPGAPHEVLLVIDGTTGQNGLVQARVFKE 243 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 V TG+++TK+DGTA+GG + PIV IPV ++G+GEG++DL+PF + F+ I Sbjct: 244 VVRVTGIVVTKLDGTAKGGIVFPIVREEGIPVKWIGLGEGMDDLQPFDPRMFAEAIC 300 >gi|94263346|ref|ZP_01287161.1| Cell division transporter substrate-binding protein FtsY [delta proteobacterium MLMS-1] gi|93456301|gb|EAT06431.1| Cell division transporter substrate-binding protein FtsY [delta proteobacterium MLMS-1] Length = 373 Score = 208 bits (530), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 115/278 (41%), Positives = 177/278 (63%), Gaps = 2/278 (0%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIH 93 + + +DD + EELE+LLI SD+G A A ++++ + D+S L ++ +L+ Sbjct: 90 FLGRKDIDDELFEELEELLITSDLGAATAMELLDRARARIKRDDLSEPAALREILQQLLL 149 Query: 94 KMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 + L+ +P P VI+V+GVNGVGKTT IGKL+ K +AG +V+L A DTFR+ Sbjct: 150 EYLVKAERPAELVMPESGPFVIMVLGVNGVGKTTTIGKLAWKFKNAGQRVLLVAADTFRA 209 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL+ WA+R + V + G+D +++ Y+AF A+ + DV+I+DTAGRLH LM Sbjct: 210 AAIEQLQAWAERVGVEVVAQQQGADPSSVIYDAFDYARPRDFDVIIVDTAGRLHTKVNLM 269 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + K+ RV+ + P APH V+ V+DATTGQN + Q ++FH +G+ +TK+DGTARG Sbjct: 270 EELRKVKRVMSKKIPGAPHEVMLVIDATTGQNGISQAKLFHQAVDVSGIALTKLDGTARG 329 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 G ++ I IP+ F+G+GE + DL F ++F + I Sbjct: 330 GIVVNISREFNIPIRFIGIGEKMEDLRDFDPREFVSAI 367 >gi|319789859|ref|YP_004151492.1| signal recognition particle-docking protein FtsY [Thermovibrio ammonificans HB-1] gi|317114361|gb|ADU96851.1| signal recognition particle-docking protein FtsY [Thermovibrio ammonificans HB-1] Length = 480 Score = 208 bits (530), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 118/271 (43%), Positives = 179/271 (66%), Gaps = 1/271 (0%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95 R +D+ + EELE+ LI +D+GV ++++ L + + + L ++ + K Sbjct: 196 FKGRSVDESLFEELEERLILADVGVKTTMELIDYLRQEAKKRKIKTSDKLLELLKERLKE 255 Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 ++ + + S +P VILV+GVNGVGKTT IGKL+K++ D GL V++AA DTFR+AAI Sbjct: 256 ILRNCRG-ELNLSEKPSVILVLGVNGVGKTTTIGKLAKQLKDKGLSVVVAAADTFRAAAI 314 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 +QL++WA+R A V ++ G+D AA+ ++A + +AK DVLI+DTAGRLHN LM I Sbjct: 315 EQLEVWAERAGARIVKAQEGTDPAAVVFDAIQSIKAKGEDVLIVDTAGRLHNKERLMKEI 374 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 K+ +V+ R P P +L VLDA TGQNAL Q E+F + TG+++TK+DGTA+GG + Sbjct: 375 HKIKKVIGREFPGQPAEILLVLDANTGQNALSQAEVFKKITDITGIVLTKLDGTAKGGIV 434 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + I T +IP+ ++G+GE I DL PF ++F Sbjct: 435 VSICNTLRIPIKYVGIGEKIEDLRPFDPEEF 465 >gi|313885165|ref|ZP_07818917.1| signal recognition particle-docking protein FtsY [Eremococcus coleocola ACS-139-V-Col8] gi|312619856|gb|EFR31293.1| signal recognition particle-docking protein FtsY [Eremococcus coleocola ACS-139-V-Col8] Length = 337 Score = 208 bits (530), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 114/298 (38%), Positives = 179/298 (60%), Gaps = 6/298 (2%) Query: 14 IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG----VAVAQKIVE 68 + K KG + + I D+ + R LD+ E+LE+ LI +D+G +A+ I + Sbjct: 29 LEKYDKGMEKSRKNFSDRIADLFTGFRELDEEFYEDLEETLISADVGFNMTIALTDAIRD 88 Query: 69 ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 E+ ++ K V+RV+ + +++ + N + P VIL VGVNGVGKTT + Sbjct: 89 EIESQNVYKGEDVKRVMIETMVKVYEDHEHENVSLNEN-PDGPTVILFVGVNGVGKTTSV 147 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GK+ ++ ++G KV++AA DTFR+ A++QL +W R V D A++ ++A K Sbjct: 148 GKIGYQLKESGKKVIMAAADTFRAGAVEQLSVWGQRLDIPVVTGIDQGDPASVVFDAVKA 207 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ D L++DTAGRL + LM + K+ R+++R +P+ VL VLDATTGQNAL Q Sbjct: 208 AKEGNYDYLLVDTAGRLQTKANLMQELAKIKRIIERENPNGVQEVLLVLDATTGQNALIQ 267 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TGL++TK+DGTA+GG ++ I IPV F+G+GEG NDL+PF A+++ Sbjct: 268 AKQFNEATEITGLVLTKLDGTAKGGVILSIRYELDIPVKFIGLGEGANDLQPFNAEEY 325 >gi|326791393|ref|YP_004309214.1| signal recognition particle-docking protein FtsY [Clostridium lentocellum DSM 5427] gi|326542157|gb|ADZ84016.1| signal recognition particle-docking protein FtsY [Clostridium lentocellum DSM 5427] Length = 419 Score = 208 bits (530), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 133/307 (43%), Positives = 198/307 (64%), Gaps = 7/307 (2%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66 +E +I++L G T + +G+ D++S+ R +D+ + EELE+ LI +D GV I Sbjct: 112 TEKKGFIKRLFGGLTKTRDSILKGVDDVLSNFRHIDEDLYEELEEALIMADFGVETTLHI 171 Query: 67 VEELLTKRYAKDVSVQRVL-YDVSELIHKML--MPLSKPFNWDFSHRPHVILVVGVNGVG 123 +E L K + ++ L + E+I K+L P + N + P VILV+GVNGVG Sbjct: 172 MESLKEKVKQEKITEPSALKVALQEIITKLLTDQPREEILN---PNGPTVILVIGVNGVG 228 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGK+S KV++AA DTFR+AAI+QL++W +R D + E G+DAAA+ + Sbjct: 229 KTTSIGKMSHLFKSQHKKVLVAAADTFRAAAIEQLQVWVNRAGVDLIKHEEGTDAAAVVF 288 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A A+++K DVLI DTAGRL N + LM + K+ R++ R P A +L VLDATTGQ Sbjct: 289 DAIAAAKSRKSDVLICDTAGRLQNKTNLMKELEKISRIIAREYPEAKKEILIVLDATTGQ 348 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NA++QV++F VA G+I+TK+DGTA+GG ++ I + K+PV ++GVGE INDL+PF A Sbjct: 349 NAIQQVKLFKEVADINGIILTKLDGTAKGGAIVGIYESLKVPVKYIGVGEQINDLQPFDA 408 Query: 304 KDFSAVI 310 + F+ + Sbjct: 409 EIFATAL 415 >gi|225848693|ref|YP_002728856.1| signal recognition particle-docking protein FtsY [Sulfurihydrogenibium azorense Az-Fu1] gi|225644095|gb|ACN99145.1| signal recognition particle-docking protein FtsY [Sulfurihydrogenibium azorense Az-Fu1] Length = 304 Score = 208 bits (530), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 116/296 (39%), Positives = 184/296 (62%), Gaps = 2/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ K+ G T +L EG I R++D+ + EE+E +L+++D+GV+ +I++ L Sbjct: 4 SFFEKIKTGLEKTKKQLIEGFNKISFGRKIDESLFEEIETVLLKADVGVSATTEIIDFLR 63 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + + ++ L ++ E ++ +L +P VIL +GVNG GKTT +GK Sbjct: 64 KESKKRGITEGEQLKELLKEKLYDILKDCQSSLKL-LGEKPDVILFLGVNGSGKTTTVGK 122 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + + G V+LAA DTFR+AAIDQL++WA+R V + G+D +A+ ++A A+ Sbjct: 123 LAWMLKNEGKSVVLAAADTFRAAAIDQLEVWANRVGVRIVKHQPGADPSAVVFDAINSAK 182 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 +K D++I+DTAGRLH LM + K+ R +++ P+ P L VLD T GQN++ Q + Sbjct: 183 SKGDDIVIVDTAGRLHTKEHLMKELQKIKRTIQKFSPNQPVETLLVLDGTLGQNSINQAK 242 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F +G+++TK+DGTA+GG +IPI KIPV F+GVGEG+ DL+PF AK F Sbjct: 243 VFKEATDVSGIVITKLDGTAKGGAIIPICRDLKIPVKFIGVGEGLEDLQPFDAKMF 298 >gi|237756196|ref|ZP_04584762.1| signal recognition particle-docking protein FtsY [Sulfurihydrogenibium yellowstonense SS-5] gi|237691643|gb|EEP60685.1| signal recognition particle-docking protein FtsY [Sulfurihydrogenibium yellowstonense SS-5] Length = 304 Score = 208 bits (529), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 116/296 (39%), Positives = 185/296 (62%), Gaps = 2/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ K+ KG T +L EG + I R++D+ + E++E +L+++D+GV Q+I++ L Sbjct: 4 SFFEKVKKGLEKTKKQLAEGFSKISFGRKIDESLFEDIEVVLLKADVGVKATQEIIQFLR 63 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + + ++ L ++ E I+ +L + +P V+L +G+NG GKTT +GK Sbjct: 64 EESKKRKITEGEQLKELLKEKIYDILKDCEGRLTF-LGEKPDVLLFLGINGSGKTTTVGK 122 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + G V+LAA DTFR+AAIDQL++WA+R V + G+D +A+ ++A A+ Sbjct: 123 LAYMLKQDGKSVVLAAADTFRAAAIDQLEVWANRVGVRIVKHQQGADPSAVVFDAINSAK 182 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 AK DV+I+DTAGRLH LM + K+ + + + + P L VLD T GQN++ Q + Sbjct: 183 AKGDDVVIVDTAGRLHTKEHLMKELQKIKKTIAKFFENQPVETLLVLDGTIGQNSINQAK 242 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F +G+I+TK+DGT++GG +IPI KIP+ F+GVGEGI+DL+PF AK+F Sbjct: 243 TFKEATDVSGIIITKLDGTSKGGAIIPICKDLKIPIKFIGVGEGIDDLQPFDAKEF 298 >gi|323340723|ref|ZP_08080975.1| cell division protein FtsY [Lactobacillus ruminis ATCC 25644] gi|323091846|gb|EFZ34466.1| cell division protein FtsY [Lactobacillus ruminis ATCC 25644] Length = 433 Score = 208 bits (529), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 127/309 (41%), Positives = 180/309 (58%), Gaps = 17/309 (5%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67 E + + KG A + I ++++ R +D+ ++LE+ LI +D+G A I Sbjct: 118 EEKTEEERYDKGLAKSRKGFGAKINALLANFRHVDEDFFDDLEETLIEADVGYETAMNIS 177 Query: 68 EELLTK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFN------WDFSHR-PHVILVV 117 +EL + R AK S DVS+ I + L+ L + F+ + P V L V Sbjct: 178 DELRDEVKLRNAKKKS------DVSDAIIERLVNLYEESGKGEDNALHFAKQGPTVFLFV 231 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 GVNGVGKTT IGKL+ + + G KV+LAAGDTFR+ AI+QL W R D V SD Sbjct: 232 GVNGVGKTTTIGKLAHRYKEEGKKVLLAAGDTFRAGAIEQLAEWGRRVGVDVVKKPEQSD 291 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 AA+ Y+A +A+ + D+L++DTAGRL N LM + K+ RV+ R P APH VL L Sbjct: 292 PAAVVYDAVVKAKQENYDILLVDTAGRLQNKVNLMKELDKIKRVITREIPDAPHEVLLAL 351 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DATTGQNAL Q + F V TG+++TK+DGTARGG ++ I K+PV +G+GE ++D Sbjct: 352 DATTGQNALTQAKQFKEVTDVTGIVLTKLDGTARGGIVLAIRNELKLPVKLVGLGEQMDD 411 Query: 298 LEPFVAKDF 306 L F ++F Sbjct: 412 LRDFDPQEF 420 >gi|258511331|ref|YP_003184765.1| signal recognition particle-docking protein FtsY [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478057|gb|ACV58376.1| signal recognition particle-docking protein FtsY [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 306 Score = 208 bits (529), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 183/297 (61%), Gaps = 3/297 (1%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 + KG + + + + + RRLDD V EE+E+ LI SD+GV A ++VE + + Sbjct: 6 RFRKGLEKSRAAMADRLLSVFRGRRLDDSVFEEMEETLILSDVGVDTAVELVEAIRREAR 65 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 + + L DV ++ M+ L P + P V+LVVGVNG GKTT IGKL+ Sbjct: 66 RRRIERAEDLPDV--MVDVMVEFLGPPAEMAENPDGPTVVLVVGVNGAGKTTTIGKLAHA 123 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G +V+LAA DTFR+AAI+QL +W +R D V GSD AA+ Y+A + A+A++ Sbjct: 124 YKSQGKRVILAAADTFRAAAIEQLMVWGERVGVDVVRHAQGSDPAAVVYDAIQAAKARRC 183 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D++I DTAGRL N + LM + K+ +V +R P APH VL V+D TTGQN L Q +F Sbjct: 184 DLVICDTAGRLQNKAHLMNELAKIRKVAERELPGAPHEVLLVIDGTTGQNGLVQARVFKE 243 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 V TG+++TK+DGTA+GG + PIV IPV ++G+GEG++DL+PF + F+ I Sbjct: 244 VVRVTGIVVTKLDGTAKGGIVFPIVREEGIPVKWIGLGEGMDDLQPFDPRMFAEAIC 300 >gi|262282629|ref|ZP_06060397.1| cell division protein FtsY [Streptococcus sp. 2_1_36FAA] gi|262261920|gb|EEY80618.1| cell division protein FtsY [Streptococcus sp. 2_1_36FAA] Length = 438 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 115/272 (42%), Positives = 164/272 (60%), Gaps = 6/272 (2%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R +D+ E+LE+LLI SD+GV VA + EEL + ++ L V +I K++ Sbjct: 160 RTVDEDFFEDLEELLITSDVGVQVASNLAEELRYEARLENAKKPDALRKV--IIEKLVDI 217 Query: 99 LSKPFNWD----FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 K ++ F V+L VGVNGVGKTT IGKL+ K G KVML A DTFR+ A Sbjct: 218 YEKDGRYNEKINFQDGLTVMLFVGVNGVGKTTSIGKLAYKYKQEGKKVMLVAADTFRAGA 277 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 + QL W R V D A++ ++ ++AQA+ +D+L+IDTAGRL N LMA Sbjct: 278 VAQLAEWGKRVDVPVVTGPEKCDPASVVFDGIERAQAENIDILMIDTAGRLQNKDNLMAE 337 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + K+ R++KR++P APH LDA+TGQNAL Q + F + TG+++TK+DGTARGG Sbjct: 338 LEKIGRIIKRVNPDAPHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGV 397 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++ I IPV +G GE I+D+ F +++F Sbjct: 398 VLAIRQELDIPVKLIGFGEKIDDIGEFNSENF 429 >gi|256960442|ref|ZP_05564613.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis Merz96] gi|256950938|gb|EEU67570.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecalis Merz96] Length = 331 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 117/261 (44%), Positives = 166/261 (63%), Gaps = 8/261 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109 LI +D+G + KI E L ++ K +V++ + +I KM+ + N + Sbjct: 62 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 119 Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P+ VIL VGVNGVGKTT IGKL+ + G KV++AA DTFR+ AIDQL +W +R Sbjct: 120 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 179 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V G D AA+ ++A ++A+ ++ DVL++DTAGRL N LM + K+ RV++R Sbjct: 180 VEVVRGNAGGDPAAVVFDAVERAKTEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 239 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL V+DATTGQNA+ Q + F TGL++TK+DGTA+GG +I I +PV Sbjct: 240 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 299 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GEGINDLEPF A DF+ Sbjct: 300 KLVGLGEGINDLEPFNANDFA 320 >gi|325479547|gb|EGC82643.1| signal recognition particle-docking protein FtsY [Anaerococcus prevotii ACS-065-V-Col13] Length = 385 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 125/307 (40%), Positives = 189/307 (61%), Gaps = 5/307 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAV 62 K E++ + K+ G T + ++ + ++DD + +ELE++LI +DIG+ Sbjct: 75 NKNTDENVGFFSKIKNGLTKTRDSFTSNLKNLFTRNVKIDDDLYDELEEILISADIGMTS 134 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSE--LIHKM-LMPLSKPFNWDFSHRPHVILVVGV 119 +IV++L + +++ +Y V + +I K+ LS N S + LV+GV Sbjct: 135 TVEIVDQLRDEIKKRNIKNSEEIYPVLKEIMIEKLDENNLSNELNIKDSELS-IFLVIGV 193 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+ + + G VMLAA DTFR+AAI+QL WADR+ + V + GSD + Sbjct: 194 NGVGKTTTIGKLANSLKNEGKSVMLAAADTFRAAAIEQLGEWADRSDIEMVAHQEGSDPS 253 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ ++A K A++K VDVLI DTAGRLHN LM + K+ + + +A L +LDA Sbjct: 254 AVIFDAIKSAKSKNVDVLICDTAGRLHNKKNLMKELEKINKTIDTHAKNANRDNLLILDA 313 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNA+ Q+ F V +GLI+TK+DG+A+GG + P+ V K+PV ++GVGEG+NDLE Sbjct: 314 TTGQNAVSQLREFKNVTDISGLILTKLDGSAKGGVIFPLQVELKVPVKYIGVGEGVNDLE 373 Query: 300 PFVAKDF 306 F ++ F Sbjct: 374 HFDSESF 380 >gi|220907732|ref|YP_002483043.1| signal recognition particle-docking protein FtsY [Cyanothece sp. PCC 7425] gi|219864343|gb|ACL44682.1| signal recognition particle-docking protein FtsY [Cyanothece sp. PCC 7425] Length = 606 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 109/308 (35%), Positives = 190/308 (61%), Gaps = 5/308 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + ++ E ++W++KL +G T L + I+ L+ E+E LL+++D+GVA Sbjct: 292 EDISVEEITWLQKLRRGLGKTRRGLVNQLKAIVGQGPLNQDAVLEIESLLLQADVGVAAT 351 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFS---HRPHVILVVGV 119 +I++ L K + + + + +++ +L PL + ++ F+ ++ ++ L+ GV Sbjct: 352 DRIIQALQDKMRQETLPPDGAIAYLKQILRGILDQPLQQGYSPTFAPEKNQLNIWLMAGV 411 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178 NGVGKTT IGK++ + +G K ++ A DTFR+AA++Q+KIW +R+ + + + +D Sbjct: 412 NGVGKTTTIGKIAHVATTSGYKCLIGAADTFRAAAVEQVKIWGERSQVEVIANPGKNTDP 471 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A AQA++V++L++DTAGRL N LM + K+ R++ + +A L VLD Sbjct: 472 AAVVFDAITAAQAREVELLLVDTAGRLQNKQNLMEELRKIRRIIDKKATNAQVEALLVLD 531 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 AT GQN LRQ ++F A TG+++TK+DGTA+GG + +V +P+ F+G GEGI DL Sbjct: 532 ATLGQNGLRQAQVFAEAAQLTGVVITKLDGTAKGGVALAVVQELGLPIRFIGAGEGITDL 591 Query: 299 EPFVAKDF 306 PF + +F Sbjct: 592 RPFSSYEF 599 >gi|326803884|ref|YP_004321702.1| signal recognition particle-docking protein FtsY [Aerococcus urinae ACS-120-V-Col10a] gi|326650906|gb|AEA01089.1| signal recognition particle-docking protein FtsY [Aerococcus urinae ACS-120-V-Col10a] Length = 341 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 122/303 (40%), Positives = 172/303 (56%), Gaps = 16/303 (5%) Query: 14 IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG----VAVAQKIVE 68 K KG T E + D+ + R +D+ ++LE+ LI SD+G +A++ + E Sbjct: 34 FEKYDKGVEKTRKSFSERMNDLFAGFREVDEEFFDDLEEALITSDVGFDMTLALSDAVRE 93 Query: 69 ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-----PHVILVVGVNGVG 123 E+ + K V+ + I +M+ K + S + P V+L VGVNGVG Sbjct: 94 EVQRRNVTKGEDVKNTV------IEEMVKIYEKGQDGSVSLKENPDGPTVMLFVGVNGVG 147 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT I K++ G KV+LAAGDTFR+ A++QL W R A V + D +A+ Y Sbjct: 148 KTTTIAKVAHHYISQGKKVLLAAGDTFRAGAVEQLNTWGQRVGAPVVSGKANGDPSAVVY 207 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A +A + D L+IDTAGRL N LM + KM RV+KR P APH L VLDATTGQ Sbjct: 208 DAVHKAVNEDYDYLLIDTAGRLQNKKNLMNELDKMNRVIKREIPDAPHETLLVLDATTGQ 267 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NAL Q + F+ TGL++TK+DGTARGG + I +PV +G+GEG++DL+PF Sbjct: 268 NALVQAKEFNKTVDITGLVLTKLDGTARGGVIFAIRYELDLPVKLIGLGEGMDDLQPFDG 327 Query: 304 KDF 306 + F Sbjct: 328 EKF 330 >gi|149174765|ref|ZP_01853390.1| cell division protein FtsY [Planctomyces maris DSM 8797] gi|148846459|gb|EDL60797.1| cell division protein FtsY [Planctomyces maris DSM 8797] Length = 315 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 126/302 (41%), Positives = 173/302 (57%), Gaps = 12/302 (3%) Query: 16 KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +L +G T L+ + D+ + LDD E+ E LI++D+GV + I EE+ K Sbjct: 6 RLKRGLEKTKEVLRTDVRDLFKAGEILDDQKIEQFEARLIKTDMGVVASSAICEEIRKKH 65 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-------HRPH---VILVVGVNGVGK 124 + V + + V E I + L+ WD S P VILV GVNGVGK Sbjct: 66 GGRTVILDEIEETVKEKI-RTLLEGEGDTKWDISAPLSPLNKNPDGVTVILVAGVNGVGK 124 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT I KL+ + V+LAAGDTFR+AA++QL +WADR + V G+D A++AY Sbjct: 125 TTSIAKLANLILKQNKTVLLAAGDTFRAAAVEQLTMWADRLGCEIVTRPDGTDPASVAYS 184 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 ++A VD LIIDTAGRL ++ LM + K+ RV+ + P+APH L VLDATTGQN Sbjct: 185 GCERALETGVDYLIIDTAGRLQTHTNLMEELEKIKRVVSKKIPNAPHESLLVLDATTGQN 244 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 + Q E F +GLI+ K+DGTARGG + I IPV ++GVGE I+DLE F ++ Sbjct: 245 GISQAEHFSKSIECSGLILAKLDGTARGGVTVAIRQKMGIPVKYVGVGEQIDDLELFNSQ 304 Query: 305 DF 306 F Sbjct: 305 GF 306 >gi|145628344|ref|ZP_01784145.1| cell division protein FtsY [Haemophilus influenzae 22.1-21] gi|144980119|gb|EDJ89778.1| cell division protein FtsY [Haemophilus influenzae 22.1-21] Length = 204 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 97/194 (50%), Positives = 138/194 (71%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +IL+VGVNGVGKTT IGKL++K G VMLAAGDTFR+AA++QL++W +R V Sbjct: 1 MILMVGVNGVGKTTTIGKLARKFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVSQ 60 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 GSD+A++ ++A + A A+ +D+LI DTAGRL N + LM + K++RV+K+ D APH Sbjct: 61 STGSDSASVIFDAMQSAAARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHE 120 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 ++ LDA TGQNA+ Q ++F+ G TG+ +TK+DGTA+GG + I K+P+ ++GVG Sbjct: 121 IMLTLDAGTGQNAISQAKLFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVG 180 Query: 293 EGINDLEPFVAKDF 306 E I DL F AK+F Sbjct: 181 EKIEDLREFNAKEF 194 >gi|189345804|ref|YP_001942333.1| signal recognition particle-docking protein FtsY [Chlorobium limicola DSM 245] gi|189339951|gb|ACD89354.1| signal recognition particle-docking protein FtsY [Chlorobium limicola DSM 245] Length = 317 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/312 (41%), Positives = 188/312 (60%), Gaps = 20/312 (6%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 I +L +G + T +E ++ I + +D+ EELE +L+ +D+GV IVE + T Sbjct: 9 ISRLKEGLSKTRDTFREKLSVITQGKTEIDEEFLEELETILVAADVGVETTLAIVEAI-T 67 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMP----------LSKPFNWD--FSHRPHVILVVGVN 120 +R K+ Y E +++MLM + P ++D P+VILVVGVN Sbjct: 68 ERAKKET------YRSGEELNRMLMEEIQQLLLDTDTAHPLDFDAPLPETPYVILVVGVN 121 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT + KL+ AG KV++AA DTFR+AA +QLKIWADR + G+D A+ Sbjct: 122 GAGKTTSVAKLAHNYDKAGKKVIIAAADTFRAAAYEQLKIWADRAGVPLIGQGQGADPAS 181 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + Y+A A ++ VDV+++DTAGRLHN + LM + K++RV K+ P APH VL VLD T Sbjct: 182 VVYDAVSSAVSRNVDVVLVDTAGRLHNKAHLMEELAKIMRVAKKKVPAAPHEVLLVLDGT 241 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNA++Q F TGL++TK+DGT++GG ++ I K+PV ++GVGE I+DL+ Sbjct: 242 TGQNAVQQAREFTRFVNVTGLVLTKLDGTSKGGIVLSISRELKLPVKYIGVGEKIDDLQL 301 Query: 301 FVAKDFSAVITG 312 F + F + G Sbjct: 302 FDREKFVEALVG 313 >gi|294339325|emb|CAZ87681.1| Cell division protein ftsY homolog [Thiomonas sp. 3As] Length = 369 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 121/303 (39%), Positives = 179/303 (59%), Gaps = 11/303 (3%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W +L G T GI+ + ++D+ + EELE LI +D G+ ++ +L Sbjct: 73 WFSRLRSGLRKTG----SGISGLFGGSKIDEALYEELESALIMADAGMPATTALLADL-- 126 Query: 73 KRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 +R K + +V +++ + +L PL KP + P V+++VGVNG GKTT IG Sbjct: 127 RRRVKSTRAETPAQVRGLLADALADLLSPLQKPLDIG-RQNPTVLMMVGVNGAGKTTTIG 185 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL++ + A KV+LAAGDTFR+AA +QL W R V S+ G D AA+A++A Sbjct: 186 KLTQHLLRADEKVLLAAGDTFRAAAREQLVAWGQRNQVQ-VISQDGGDPAAVAFDAVSAG 244 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+++DV+I+DTAGRL LM + K+ RV + APH +L V+DA GQNAL QV Sbjct: 245 KAREIDVVIVDTAGRLPTQLHLMEELKKVKRVTAKAMDGAPHEILLVIDANNGQNALAQV 304 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 F G TGL++TK+DG+A+GG + I +PVYF+GVGE ++DL+ F AK F+ Sbjct: 305 RAFDDALGLTGLVITKLDGSAKGGVIAAIARERPVPVYFIGVGESLDDLQTFDAKAFARA 364 Query: 310 ITG 312 + G Sbjct: 365 LVG 367 >gi|281419892|ref|ZP_06250891.1| signal recognition particle-docking protein FtsY [Prevotella copri DSM 18205] gi|281406019|gb|EFB36699.1| signal recognition particle-docking protein FtsY [Prevotella copri DSM 18205] Length = 317 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 112/264 (42%), Positives = 165/264 (62%), Gaps = 17/264 (6%) Query: 54 IRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF-----N 104 I SD+GV KI+ E + +Y + R+L + ++ + LS+ + Sbjct: 53 ITSDVGVETTVKIIRRIEERVARDKYVSTSELNRILRE------EIAILLSENHSDDLAD 106 Query: 105 WDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 W+ H+P+VILVVGVNGVGKTT IGKL+ + AG KV+L A DTFR+AA++Q+ IW Sbjct: 107 WELPADHKPYVILVVGVNGVGKTTTIGKLAYQFKKAGKKVVLGAADTFRAAAVEQICIWG 166 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 +R V ++GSD A++A++ + A+A DV++IDTAGRLHN LM + K+ V+ Sbjct: 167 ERVGVPVVKQQMGSDPASVAFDTLQSAKANGADVVLIDTAGRLHNKVNLMNELKKIKEVM 226 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 K++ P AP V+ VLD +TGQNA Q + F AV + L +TK+DGTA+GG +I I Sbjct: 227 KKVMPEAPDEVMLVLDGSTGQNAFEQAKQFSAVTNISSLAITKLDGTAKGGVVIGISDQL 286 Query: 283 KIPVYFLGVGEGINDLEPFVAKDF 306 K+PV ++G+GEG+ DL+ F +F Sbjct: 287 KVPVKYIGLGEGMEDLQLFNKTEF 310 >gi|221065349|ref|ZP_03541454.1| signal recognition particle-docking protein FtsY [Comamonas testosteroni KF-1] gi|220710372|gb|EED65740.1| signal recognition particle-docking protein FtsY [Comamonas testosteroni KF-1] Length = 392 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 130/302 (43%), Positives = 184/302 (60%), Gaps = 11/302 (3%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW+ +L G T I + + ++DD + EELED L+ +D GV Q ++E+L Sbjct: 97 SWMERLKAGLRKTG----SSIATVFTGTQIDDRLYEELEDALLMADTGVKATQHLLEDL- 151 Query: 72 TKRYAKDVSVQR---VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 KR K+ V +++ + +L PL KP H P VI+V GVNG GKTT I Sbjct: 152 -KRRVKETKTTEPAAVKALLADALTDLLRPLEKPLTIG-EHTPTVIMVAGVNGAGKTTSI 209 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+K ++D V+LAA DTFR+AA +QL +WA+R + + + S+ G D AA++++A Sbjct: 210 GKLTKHLADGEQSVLLAAADTFRAAAREQLGVWANRNTVEII-SQDGGDPAAVSFDAVSA 268 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 +A+K DV+++DTAGRL LM + K+ RV+ + D APH VL V+D TGQNAL Q Sbjct: 269 GKARKKDVVLVDTAGRLPTQLHLMEELKKIKRVVSKADGTAPHEVLLVIDGNTGQNALTQ 328 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 V F TGLI+TK+DGTA+GG L I +PVYF+GVGE I DLE F A++F+ Sbjct: 329 VRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKIEDLETFSAREFAQ 388 Query: 309 VI 310 + Sbjct: 389 AL 390 >gi|327538567|gb|EGF25229.1| signal recognition particle-docking protein FtsY [Rhodopirellula baltica WH47] Length = 337 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 122/300 (40%), Positives = 177/300 (59%), Gaps = 9/300 (3%) Query: 16 KLTKGFASTSLKLKEGITDIISS--RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 K+ G T L I D+ + R +D+ EL LIR+D+G A +I + + Sbjct: 39 KMKTGLQKTRRVLGTDIRDLFKAEGRLVDEDFLGELYARLIRTDMGAGPAGRIRDRVAKD 98 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 + V ++ V+ ++E I + L K + D + P VILVVGVNG GKTT IGK Sbjct: 99 YRGRVVQLEEVVQTITEDIREQL----KQDHGDLAKADSPPTVILVVGVNGSGKTTSIGK 154 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 LS + G K++L AGDTFR+AA++QL IW++R + V G D A++AY+ ++A Sbjct: 155 LSHHLVSQGHKIVLGAGDTFRAAAVEQLTIWSERIGCEIVTGPSGVDPASVAYQTTEKAI 214 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 D IIDTAGRL LM + K+ RV+ + P APH VL VLDAT GQNA+ Q + Sbjct: 215 EIGADYAIIDTAGRLQTQGKLMQELEKIRRVIDKKLPGAPHEVLLVLDATAGQNAISQAK 274 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F + AG TG+I++K+DG+A+GG ++PI ++PV F+G+GEGI D+ F F+A + Sbjct: 275 GFSSAAGCTGIILSKLDGSAKGGVVLPIREQFELPVKFVGLGEGIEDMTKFDPDTFAAAL 334 >gi|283782239|ref|YP_003372994.1| signal recognition particle-docking protein FtsY [Pirellula staleyi DSM 6068] gi|283440692|gb|ADB19134.1| signal recognition particle-docking protein FtsY [Pirellula staleyi DSM 6068] Length = 343 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 127/310 (40%), Positives = 181/310 (58%), Gaps = 7/310 (2%) Query: 2 SNQKVA--SESLSWIRKLTKGFASTSLKLKEGITDII--SSRRLDDGVREELEDLLIRSD 57 S++K A ++ + +L T+ L I D+ R +DD + + L +L+++D Sbjct: 26 SSEKPAEPAQPVGIFARLKSALKKTTDLLNTDIRDLFKKEGRLVDDEMLDSLYSILVKTD 85 Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILV 116 +GV A +I + + T + V + V+ V SEL + PL +P + + P V+LV Sbjct: 86 MGVGPAGRIRDRVKTDFRGRVVHLTDVIASVKSELRELVAQPL-QPITY-AAEGPTVVLV 143 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNG GKTT I KL+ G V+L AGDTFR+AA +QL IWA+R A+ V E G Sbjct: 144 VGVNGSGKTTSIAKLTSYFRQQGKSVVLGAGDTFRAAACEQLTIWAERLGANIVKGEAGG 203 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D AA+A+ A A A+K DV IIDTAGRL + LM + K+ RV+ + P APH V+ V Sbjct: 204 DPAAVAHRAVATAIAEKADVCIIDTAGRLQTQTNLMQQLEKIHRVIGKQIPEAPHEVILV 263 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDAT GQNA+ Q + F A TG+++ K+DG+A+GG +IPI IPV F+G+GE Sbjct: 264 LDATAGQNAISQAQGFSTAAHCTGIVLAKLDGSAKGGVVIPIREKFSIPVKFVGLGEKAT 323 Query: 297 DLEPFVAKDF 306 DL F + F Sbjct: 324 DLAIFDSDQF 333 >gi|110637071|ref|YP_677278.1| signal recognition particle-docking protein FtsY [Cytophaga hutchinsonii ATCC 33406] gi|110279752|gb|ABG57938.1| signal recognition particle-docking protein FtsY [Cytophaga hutchinsonii ATCC 33406] Length = 320 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 123/298 (41%), Positives = 177/298 (59%), Gaps = 9/298 (3%) Query: 17 LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG T ++ ++ ++DD V + LE++L+ SD+G+ KI+ + R Sbjct: 15 LNKGLEKTKTSFFSKLSKAVLGKTQVDDEVLDNLEEVLVTSDVGIETTLKIIGRI-QDRA 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLM----PLSKPFNW-DFSHRPHVILVVGVNGVGKTTVI 128 +KD VS + + E I +L+ P SK F + P+VI+VVGVNGVGKTT I Sbjct: 74 SKDKYVSTSELNTILKEEIAALLVGDTVPDSKEFEIPETGGLPYVIMVVGVNGVGKTTTI 133 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ G KV+L A DTFR+AA++QL++W R + + +D AA+A++A KQ Sbjct: 134 GKLASHYHKNGKKVVLGAADTFRAAAVEQLELWGKRVGVPVISHGMNTDPAAVAFDAVKQ 193 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A K DV+IIDTAGRLH LM + K+ RV+++ P APH V+ VLD +TGQNA+ Q Sbjct: 194 AVDMKADVVIIDTAGRLHTKVNLMNELSKIKRVIQKFIPEAPHDVMLVLDGSTGQNAVIQ 253 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F T L +TK+DGTA+GG +I I +IPV ++GVGE + DL+ F +F Sbjct: 254 AREFTKATEVTSLAITKLDGTAKGGVVIGISDQFQIPVRYIGVGEKMEDLQVFNKHEF 311 >gi|255020683|ref|ZP_05292745.1| Signal recognition particle receptor protein FtsY (alpha subunit) [Acidithiobacillus caldus ATCC 51756] gi|254969919|gb|EET27419.1| Signal recognition particle receptor protein FtsY (alpha subunit) [Acidithiobacillus caldus ATCC 51756] Length = 403 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 113/295 (38%), Positives = 184/295 (62%), Gaps = 7/295 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKI---VEELL 71 +L +G + ++ + ++ ++ +DD + E+LE +L+++D+GVA + I V + + Sbjct: 102 RLREGLRRSREQISASVEQLVLGKKVIDDELLEDLEAILLQADMGVAATRDIMDRVTQRV 161 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + KD + R + + + +L P ++P+ + V+++VG+NG GKTT IGKL Sbjct: 162 RRNELKDPAALRAA--IRQALLDILQPRAQPWT-PAKGQTQVLMMVGINGAGKTTTIGKL 218 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + G ++L AGDTFR+AA++QL WA+R + G+D+A++ Y+A+ A+A Sbjct: 219 AARWKAEGYSILLGAGDTFRAAAVEQLTGWAERVQVPVIAQGAGADSASVLYDAYAAARA 278 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +D++I DTAGRLH LM + K+ RVL + DP APH + VLDA TGQNAL+QV Sbjct: 279 RGIDLVIADTAGRLHTQGHLMEELKKVKRVLAKQDPGAPHQIWLVLDAGTGQNALQQVRQ 338 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH G TG+ +TK+DGTA+GG + + +P+ F+GVGEG+ DL PF A+ F Sbjct: 339 FHEAVGLTGICITKLDGTAKGGVVAAVAKALPLPIRFIGVGEGVEDLRPFSAEAF 393 >gi|188591100|ref|YP_001795700.1| signal recognition particle gtpase [Cupriavidus taiwanensis LMG 19424] gi|170937994|emb|CAP62978.1| Signal recognition particle GTPase [Cupriavidus taiwanensis LMG 19424] Length = 385 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 119/300 (39%), Positives = 175/300 (58%), Gaps = 5/300 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W+++L G + TS L + ++D+ + EELE L+ +D GV + ++ EL Sbjct: 91 WMQRLRTGLSKTSRNL----GTLFVGVKVDEDLFEELETALLMADAGVEATEYLLGELRK 146 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 + A+ + + + L+ + +P V+++ GVNG GKTT IGKL Sbjct: 147 RVKAERIETAEGVKTALRELLTRLLRPLEKTMELGREQPLVMMIAGVNGAGKTTSIGKLC 206 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 K KV+LAAGDTFR+AA +QL IW +R + V E G D AA+ ++A A+A+ Sbjct: 207 KHFQRYDQKVLLAAGDTFRAAAREQLAIWGERNNVTVVAQESG-DPAAVIFDAVNAAKAR 265 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 +D+++ DTAGRL LM + K+ RV+ + P APH VL V+DA TGQNAL+Q F Sbjct: 266 GIDIVMADTAGRLPTQLHLMEELKKVKRVISKAMPSAPHEVLLVIDANTGQNALQQTRAF 325 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+PF A++F+ + G Sbjct: 326 DDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFKAEEFADALLG 385 >gi|91227501|ref|ZP_01261838.1| cell division protein FtsY [Vibrio alginolyticus 12G01] gi|91188525|gb|EAS74817.1| cell division protein FtsY [Vibrio alginolyticus 12G01] Length = 403 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 111/263 (42%), Positives = 173/263 (65%), Gaps = 1/263 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + S +++D+ + EELE+ L+ +D+G+ KI+ L Sbjct: 96 SFFARLKRSLSRTKANIGAGFFGLFSGKKIDEDLFEELEEQLLIADVGMNTTTKIINNLT 155 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K D+ LY + E + ++L + +P D + P+VIL+VGVNGVGKTT IGK Sbjct: 156 EKATRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSNKTPYVILMVGVNGVGKTTTIGK 215 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ Y+A + A+ Sbjct: 216 LAKQFQTQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAK 275 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ VDV+I DTAGRL N + LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 276 ARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 335 Query: 251 MFHAVAGTTGLIMTKMDGTARGG 273 +F VA TG+ +TK+DGTA+GG Sbjct: 336 LFSDVAPLTGITLTKLDGTAKGG 358 >gi|194466491|ref|ZP_03072478.1| signal recognition particle-docking protein FtsY [Lactobacillus reuteri 100-23] gi|194453527|gb|EDX42424.1| signal recognition particle-docking protein FtsY [Lactobacillus reuteri 100-23] Length = 506 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 115/262 (43%), Positives = 160/262 (61%), Gaps = 10/262 (3%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL----SKPFNWDF 107 +LI SD+G +A K+ +EL R + + DVS +I + ++ L + N D Sbjct: 236 MLIESDVGYDMAMKLSDEL---REEVKLQNAKSKQDVSNVIIEKMVELYDEAGQDENPDL 292 Query: 108 S---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 + P VI+ VGVNG GKTT IGK++ G KV+LAA DTFR+ A +QL +WA R Sbjct: 293 TMAKEGPTVIMFVGVNGAGKTTTIGKMAALFKKQGKKVLLAAADTFRAGATEQLDVWAKR 352 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 D V D AA+ ++A K+A+ +K D+L +DTAGRL N LM + KM R+L R Sbjct: 353 DGVDIVTGPENGDPAAVVFDAVKRAKDEKYDILFVDTAGRLQNKVNLMNELAKMKRILNR 412 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P APH VL VLDATTGQNAL Q ++F TG+++TK+DGTARGG ++ I + Sbjct: 413 EIPDAPHEVLLVLDATTGQNALNQAKLFKESTDVTGIVLTKLDGTARGGIVLAIRNELHL 472 Query: 285 PVYFLGVGEGINDLEPFVAKDF 306 PV ++G+GE ++DL+ F A DF Sbjct: 473 PVKYVGLGEKVDDLQKFDAGDF 494 >gi|299531836|ref|ZP_07045237.1| signal recognition particle-docking protein FtsY [Comamonas testosteroni S44] gi|298720156|gb|EFI61112.1| signal recognition particle-docking protein FtsY [Comamonas testosteroni S44] Length = 385 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/302 (42%), Positives = 185/302 (61%), Gaps = 11/302 (3%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 +W+ +L G T I + + ++DD + EELED L+ +D GV Q ++E+L Sbjct: 90 NWMERLKAGLRKTG----SSIATVFTGTQIDDRLYEELEDALLMADTGVKATQHLLEDL- 144 Query: 72 TKRYAKDVSVQR---VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 KR K+ V +++ + +L PL KP + H P VI+V GVNG GKTT I Sbjct: 145 -KRRVKETKTTEPAAVKALLADALTDLLRPLEKPLSIG-EHTPTVIMVAGVNGAGKTTSI 202 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+K ++D V+LAA DTFR+AA +QL +WA+R + + + S+ G D AA++++A Sbjct: 203 GKLTKHLADGEQSVLLAAADTFRAAAREQLGVWANRNTVEII-SQDGGDPAAVSFDAVSA 261 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 +A+K DV+++DTAGRL LM + K+ RV+ + D APH VL V+D TGQNAL Q Sbjct: 262 GKARKKDVVLVDTAGRLPTQLHLMEELKKIKRVVSKADGTAPHEVLLVIDGNTGQNALTQ 321 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 V F TGLI+TK+DGTA+GG L I +PVYF+GVGE I DLE F A++F+ Sbjct: 322 VRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKIEDLETFSAREFAQ 381 Query: 309 VI 310 + Sbjct: 382 AL 383 >gi|220903931|ref|YP_002479243.1| signal recognition particle-docking protein FtsY [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868230|gb|ACL48565.1| signal recognition particle-docking protein FtsY [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 547 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 124/298 (41%), Positives = 181/298 (60%), Gaps = 3/298 (1%) Query: 16 KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K+T+G A T + G+ + S LDD EELE+L I +D+G + ++VE L K Sbjct: 249 KITEGLARTREQFARGLDTLFSGHGELDDAFWEELEELFIMADLGYEPSMELVERL--KE 306 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 A+ V + L+ ++ P + P V+L++GVNGVGKTT I KL+ + Sbjct: 307 RARKEKVTEASGMRALLMAEVEEIFRAPRRIAAVNPPEVVLMIGVNGVGKTTTIAKLAHR 366 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G KVM+AA DTFR+AAI+QL++WA+R A F G+D A++AYEA +A + V Sbjct: 367 ARMQGKKVMIAAADTFRAAAIEQLQVWAERVGALFHAKSAGADPASVAYEAMDRAVREGV 426 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D+L +DTAGRL LM + K+ +VL + P APH + V+DATTGQNAL Q ++F Sbjct: 427 DILFVDTAGRLQTKVNLMEELTKIRQVLGKKHPGAPHRSILVIDATTGQNALSQTKLFKE 486 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 AG LI+TK+DGTA+GG I + + H +P+ F+G+GE + DL PF +D++ + G Sbjct: 487 AAGVDELILTKLDGTAKGGVAIAVAMQHHLPITFVGLGEKMEDLRPFNGEDYARALLG 544 >gi|83589811|ref|YP_429820.1| signal recognition particle-docking protein FtsY [Moorella thermoacetica ATCC 39073] gi|83572725|gb|ABC19277.1| signal recognition particle-docking protein FtsY [Moorella thermoacetica ATCC 39073] Length = 311 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 124/304 (40%), Positives = 189/304 (62%), Gaps = 7/304 (2%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +++ +L +G T L + ++++ S RLDD +ELE++L+ +D+G + ++VE Sbjct: 1 MNFFSRLKEGLNKTRENLTRRVGELLAGSSRLDDDFFDELEEILLTADVGARTSMELVER 60 Query: 70 LLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 L +R +D + V + E + +ML W P VILVVGVNG GKTT Sbjct: 61 L--RREVRDRKITDPAAVGSLLQEEVARMLGEEVPRLVW-APEPPTVILVVGVNGAGKTT 117 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+ + + G +V+LAA DTFR+AA +QL +WA+R A + + G+D AA+ Y A Sbjct: 118 TIGKLACRFAREGKRVILAAADTFRAAAGEQLAVWAERAGAGLIRHQAGADPAAVVYAAI 177 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+ ++ DV+++DTAGRL + LM + K+ RV++R P +PH VL VLDATTGQNAL Sbjct: 178 QSARNRRADVVLVDTAGRLQTKTNLMEELKKIRRVMERELPGSPHEVLLVLDATTGQNAL 237 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q +F G TG+ +TK+DGTA+GG ++ I IPV +G+GEG +DL+ F +DF Sbjct: 238 SQARLFSEAVGVTGIALTKLDGTAKGGVILGIAAEMGIPVKLVGLGEGPDDLKEFQPRDF 297 Query: 307 SAVI 310 +A + Sbjct: 298 AAAL 301 >gi|264680036|ref|YP_003279945.1| signal recognition particle-docking protein [Comamonas testosteroni CNB-2] gi|262210551|gb|ACY34649.1| signal recognition particle-docking protein [Comamonas testosteroni CNB-2] Length = 385 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/302 (42%), Positives = 184/302 (60%), Gaps = 11/302 (3%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 +W+ +L G T I + + ++DD + EELED L+ +D GV Q ++E+L Sbjct: 90 NWMERLKAGLRKTG----SSIATVFTGTQIDDRLYEELEDALLMADTGVKATQHLLEDL- 144 Query: 72 TKRYAKDVSVQR---VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 KR K+ V +++ + +L PL KP H P VI+V GVNG GKTT I Sbjct: 145 -KRRVKETKTTEPAAVKALLADALTDLLRPLEKPLTIG-EHTPTVIMVAGVNGAGKTTSI 202 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+K ++D V+LAA DTFR+AA +QL +WA+R + + + S+ G D AA++++A Sbjct: 203 GKLTKHLADGEQSVLLAAADTFRAAAREQLGVWANRNTVEII-SQDGGDPAAVSFDAVSA 261 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 +A+K DV+++DTAGRL LM + K+ RV+ + D APH VL V+D TGQNAL Q Sbjct: 262 GKARKKDVVLVDTAGRLPTQLHLMEELKKIKRVVSKADGTAPHEVLLVIDGNTGQNALTQ 321 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 V F TGLI+TK+DGTA+GG L I +PVYF+GVGE I DLE F A++F+ Sbjct: 322 VRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKIEDLETFSAREFAQ 381 Query: 309 VI 310 + Sbjct: 382 AL 383 >gi|220928147|ref|YP_002505056.1| signal recognition particle-docking protein FtsY [Clostridium cellulolyticum H10] gi|219998475|gb|ACL75076.1| signal recognition particle-docking protein FtsY [Clostridium cellulolyticum H10] Length = 302 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 126/301 (41%), Positives = 189/301 (62%), Gaps = 10/301 (3%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + KL +G T + E I + +S ++D+ + EELE++LI SDIG+ +++E+ Sbjct: 1 MGFFDKLKEGLQKTRKSITEKIDQVLVSFGKVDEELFEELEEILITSDIGIDTTMRVIED 60 Query: 70 LLTKRYAKDVSVQRVL--YDVSELIHKMLMPLSKPFNWDFS--HRPHVILVVGVNGVGKT 125 L K V ++++ DV L+ + L + + + +P VI+V+GVNGVGKT Sbjct: 61 LKEK-----VKERKIIDPKDVKGLLKESLKEILEKGGSEMKIGTKPSVIIVIGVNGVGKT 115 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGK++ + G KV+LAAGDTFR+AAIDQL++WA R D + + GSD AA+ ++A Sbjct: 116 TSIGKIANLYKNQGKKVLLAAGDTFRAAAIDQLEVWAQRVGTDIIMHKEGSDPAAVIFDA 175 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + A+++ D+LI DTAGRLH LM + K+ RVL R P A L VLDATTGQNA Sbjct: 176 VQAAKSRNADLLICDTAGRLHTKKNLMEELKKISRVLDRELPGADRETLLVLDATTGQNA 235 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + Q + F + TG+++TK+DGTA+GG +I I IPV +GVGE ++DL+ F A++ Sbjct: 236 ISQAKTFSETSDITGIVLTKLDGTAKGGIVIAIKSELDIPVKLIGVGEQLDDLQKFDAEE 295 Query: 306 F 306 F Sbjct: 296 F 296 >gi|212704579|ref|ZP_03312707.1| hypothetical protein DESPIG_02641 [Desulfovibrio piger ATCC 29098] gi|212671978|gb|EEB32461.1| hypothetical protein DESPIG_02641 [Desulfovibrio piger ATCC 29098] Length = 876 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 127/304 (41%), Positives = 188/304 (61%), Gaps = 5/304 (1%) Query: 16 KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K+++G + T + + + SS L++ EELE+L I +D+G + ++VE L + Sbjct: 575 KISEGLSRTREQFSRRLDSLFSSHGELNESFWEELEELFIMADLGYEPSLELVERL--RE 632 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 A+ +V RV DV L+ + + + P + P V+L +GVNGVGKTT I KL+ Sbjct: 633 RARKENVTRV-EDVRGLLMAEVDEIFRLPRRISAVNPPEVVLFIGVNGVGKTTTIAKLAH 691 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 + G KVM+AA DTFR+AAI+QL++WA+R A F GSD A++AYEA +A A+K Sbjct: 692 RARMQGKKVMIAAADTFRAAAIEQLQVWAERVGALFHARPAGSDPASVAYEAMDRALAEK 751 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 VD+L +DTAGRL LM + K+ +VL + APH + V+DATTGQNAL Q ++F Sbjct: 752 VDILFVDTAGRLQTKVNLMEELTKIRQVLGKKHEGAPHRCILVIDATTGQNALSQAKLFK 811 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 AG LI+TK+DGTA+GG I + + K+P+ ++G+GE + DL PF D++ + G Sbjct: 812 EAAGVDELILTKLDGTAKGGVAIAVAMQEKLPITYVGLGEKLEDLRPFNGADYARALLGD 871 Query: 314 LDYG 317 LD G Sbjct: 872 LDQG 875 >gi|255029040|ref|ZP_05300991.1| hypothetical protein LmonL_07576 [Listeria monocytogenes LO28] Length = 289 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 116/262 (44%), Positives = 166/262 (63%), Gaps = 11/262 (4%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111 +LI +D+G ++V+ L + +++S + DV E+I + L+ + + + Sbjct: 19 ILIGADVGFETVMELVDTLRREVQLRNISDPK---DVQEVIVEKLVEIYQGDEKE-DEAL 74 Query: 112 H-------VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 H VIL VGVNGVGKTT IGK++ + G KVMLAAGDTFR+ AIDQL++W +R Sbjct: 75 HIEEDGLTVILFVGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIDQLEVWGER 134 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 T D + GSD AA+ ++A + A+A+K D+L+ DTAGRL N LM + K+ RV+ R Sbjct: 135 TGVDVIKQAEGSDPAAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITR 194 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P+APH VL VLDATTGQNA Q + F TG+I+TK+DGTA+GG +I I I Sbjct: 195 EIPNAPHEVLLVLDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDI 254 Query: 285 PVYFLGVGEGINDLEPFVAKDF 306 PV F+G+GE ++DL+ F A ++ Sbjct: 255 PVKFVGLGEQMDDLQAFDANEY 276 >gi|294791675|ref|ZP_06756823.1| signal recognition particle-docking protein FtsY [Veillonella sp. 6_1_27] gi|294456905|gb|EFG25267.1| signal recognition particle-docking protein FtsY [Veillonella sp. 6_1_27] Length = 311 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 119/302 (39%), Positives = 178/302 (58%), Gaps = 9/302 (2%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 + + ++ G T + + I I ++DD ++LE +++ SD+G + +++ Sbjct: 2 AFGFFDRIKDGLEKTRKSFVKNVESIVIGYAQIDDDFLDDLEAVMLTSDLGPKTTEYLMK 61 Query: 69 ELLTKRYAKDVSVQR---VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 E+ +R + + V+ + + I +ML+ H P VILVVGVNGVGKT Sbjct: 62 EI--RRGVTEGIINHTGDVMPFMEDRITEMLIDQEDEITL---HHPEVILVVGVNGVGKT 116 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T I KL+ + G KV++ AGDTFR+AA DQL IWADR V + G+D AA+ Y+A Sbjct: 117 TTIAKLANYYTKEGKKVIIVAGDTFRAAAADQLSIWADRVGVPIVKHKEGADPAAVVYDA 176 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + A+A+ D++I+DTAGRLH LM + KM RV APH L VLD TTGQNA Sbjct: 177 MEAAKARNADLVIVDTAGRLHTKVNLMEELKKMGRVANNHVEGAPHQTLLVLDGTTGQNA 236 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + Q ++F G+++TK+DGTA+GG +I I +PV ++GVGEG++DL PF AK+ Sbjct: 237 VSQAKLFGQAVPVNGIVVTKLDGTAKGGVVISIKEELGVPVRWIGVGEGMDDLRPFNAKE 296 Query: 306 FS 307 F+ Sbjct: 297 FA 298 >gi|89890440|ref|ZP_01201950.1| cell division protein, signal recognition particle (docking protein) FtsY [Flavobacteria bacterium BBFL7] gi|89517355|gb|EAS20012.1| cell division protein, signal recognition particle (docking protein) FtsY [Flavobacteria bacterium BBFL7] Length = 317 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 125/297 (42%), Positives = 190/297 (63%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG T + + ++ + ++D V ++LED+LI SD+GVA K+++ + R Sbjct: 16 LDKGLEKTKTTFFDKLGKAVAGKSKVDADVLDDLEDVLISSDVGVATTIKVIDRI-EDRV 74 Query: 76 AKD-----VSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 AKD + +L D ++ L+ ++ + F P+V++VVGVNGVGKTT IG Sbjct: 75 AKDKYLGTTELNGILRDEIAGLLSEVNNGDATDFTIPKQEGPYVVMVVGVNGVGKTTTIG 134 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + GLKV+L AGDTFR+AA+DQL+IWADR + V ++GSD A++A++ + A Sbjct: 135 KLAHQFKQKGLKVVLGAGDTFRAAAVDQLQIWADRVGVEIVKQDMGSDPASVAFDTLQSA 194 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A+ DV+++DTAGRLHN LM + K+ RV++++ P APH V+ VLD +TGQNA Q Sbjct: 195 VAQNADVVLLDTAGRLHNKVNLMNELTKVKRVMQKIIPDAPHDVMLVLDGSTGQNAFEQA 254 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F A + L +TK+DGTA+GG +I I +IPV ++GVGEG++DL+ F +F Sbjct: 255 KQFTAATEVSSLAVTKLDGTAKGGVVIGISDQFQIPVRYIGVGEGMDDLQVFNKTEF 311 >gi|307150109|ref|YP_003885493.1| signal recognition particle-docking protein FtsY [Cyanothece sp. PCC 7822] gi|306980337|gb|ADN12218.1| signal recognition particle-docking protein FtsY [Cyanothece sp. PCC 7822] Length = 481 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 109/318 (34%), Positives = 186/318 (58%), Gaps = 12/318 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + V E ++W+++L +G T L + I+ L+ E+E LL+++D+G+ Sbjct: 167 EDVTEEEINWLKRLREGLGKTRRSLVNQLKAIVGQGPLNQDAVTEIEALLLQADVGIEAT 226 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN--WDFSHRP-----HVILV 116 I+E L K + + ++ + + E+I ++L +PF D + P ++ L+ Sbjct: 227 DYIIEALQEKLREESLPPEQAIEYLKEIIREIL---DRPFKHFEDTAFEPEKDVLNIWLL 283 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IG 175 GVNG GKTT IGKL+ + +G ++ A DTFR+AA++Q+KIW +R+ + + + Sbjct: 284 TGVNGAGKTTTIGKLAHMANKSGYSCLIVAADTFRAAAVEQVKIWGERSGTEVIANPGKN 343 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 +D AA+ ++ AQ++ V++L++DTAGRL N LM + K+ R++ + P A L Sbjct: 344 TDPAAVVFDGINAAQSRNVNLLLVDTAGRLQNKKNLMDELAKIRRIIDKKAPKAKVESLL 403 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 VLDAT GQN LRQ ++F A +G+++TK+DGTA+GG + + +P+ F+G GEGI Sbjct: 404 VLDATLGQNGLRQAQVFSEAAKLSGVVLTKLDGTAKGGVALAVAQQLDLPIRFIGAGEGI 463 Query: 296 NDLEPFVAKDF-SAVITG 312 DL PF + +F A++ G Sbjct: 464 EDLRPFSSYEFVEALLNG 481 >gi|163858287|ref|YP_001632585.1| signal recognition particle receptor GTPase [Bordetella petrii DSM 12804] gi|163262015|emb|CAP44317.1| signal recognition particle receptor GTPase [Bordetella petrii] Length = 321 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 115/304 (37%), Positives = 180/304 (59%), Gaps = 11/304 (3%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW+ +L +G + T + + + ++D+ + EELE LI +D G+ ++++ L Sbjct: 21 SWLGRLKQGLSRTG----QSLGGLFVGVKVDENLFEELESALIMADAGLEATEQLLTALR 76 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + R + + +V + +++ L PL + F+ + P V+++ GVNG GKTT IGK Sbjct: 77 ARVRKERIENPAQVKQALRQVLADHLRPLERQFDLRRAS-PLVVMIAGVNGAGKTTSIGK 135 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ G V+LAAGD FR+AA +QL W R + + E G D AA+A++A + Sbjct: 136 LAHTFQRQGASVLLAAGDIFRAAAREQLIEWGSRNNVSVIAQE-GGDPAAVAFDAVNAGR 194 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ V+++DTAGRL LM + K+ RV+ + D APH VL V+D TGQNAL Q+ Sbjct: 195 ARGAGVVMVDTAGRLPTQLHLMEELKKIRRVIGKADGAAPHEVLLVVDGNTGQNALAQIR 254 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK----IPVYFLGVGEGINDLEPFVAKDF 306 F A G TGL++TK+DGTA+GG L + + +PVY++GVGEG+ DL+PFVA +F Sbjct: 255 AFDAAIGLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPVPVYWIGVGEGMEDLQPFVADEF 314 Query: 307 SAVI 310 + + Sbjct: 315 AGAL 318 >gi|125624534|ref|YP_001033017.1| signal recognition particle-docking protein [Lactococcus lactis subsp. cremoris MG1363] gi|124493342|emb|CAL98316.1| signal recognition particle-docking protein [Lactococcus lactis subsp. cremoris MG1363] gi|300071328|gb|ADJ60728.1| signal recognition particle-docking protein [Lactococcus lactis subsp. cremoris NZ9000] Length = 459 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 124/293 (42%), Positives = 184/293 (62%), Gaps = 9/293 (3%) Query: 15 RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 +K + T +G ++ ++ R +D+ EELE+ LI SD+GV +A ++ EEL + Sbjct: 156 KKYEQSLTLTRKTFSDGFNELFANFRTVDEEFFEELEETLIMSDVGVDLAMEVTEEL--R 213 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSK----PFNWDF-SHRPHVILVVGVNGVGKTTVI 128 + AK V+ + D+ +LI + ++ P D S V L VGVNGVGKTT I Sbjct: 214 KEAKLVNAKST-DDLRQLIIEKIVDKFDGEKLPTKLDIQSDGLSVFLFVGVNGVGKTTTI 272 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ + + G KV+LAA DTFR+ AIDQL W +R+ + V GSD AA+ ++A + Sbjct: 273 GKLAARYKNEGKKVLLAAADTFRAGAIDQLVEWGNRSGVEVVTKPAGSDPAAVVFDALAK 332 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ D+L++DTAGRL N LM + K+ +V+KR P APH + LDATTGQNA++Q Sbjct: 333 AKAENYDILLVDTAGRLQNKDNLMKELEKIGKVIKREIPDAPHETILALDATTGQNAIQQ 392 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F AV TG+ +TK+DG+A+GG ++ IV + KIPV +G+GE +NDL+ F Sbjct: 393 AKEFSAVTPITGIALTKLDGSAKGGIVLSIVQSLKIPVKLIGLGEKLNDLQDF 445 >gi|319744740|gb|EFV97082.1| cell division protein FtsY [Streptococcus agalactiae ATCC 13813] Length = 536 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 128/307 (41%), Positives = 184/307 (59%), Gaps = 11/307 (3%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 K S+ + R L K S +L +++ RR+D+ EELE++LI SD+GV VA Sbjct: 227 KAESQEEKYNRSLKKTRTGFSARLNAFLSNF---RRVDEEFFEELEEMLILSDVGVNVAT 283 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFSHRPHVILVVGV 119 ++ E+L RY + + D+ +I + L+ + + +N +F V+L VGV Sbjct: 284 QLTEDL---RYEAKLENAKKSEDLKRVIVEKLVEIYEKDGIYNEAINFQEGLTVMLFVGV 340 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R V E +D A Sbjct: 341 NGVGKTTSIGKLAHQYKSQGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGEEKADPA 400 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++ ++A A+ VDVL+IDTAGRL N LMA + K+ R++KR+ P APH L LDA Sbjct: 401 SVVFDGMEKAVAQGVDVLLIDTAGRLQNKENLMAELEKIGRIIKRVVPDAPHETLLALDA 460 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV F+G GE I+D+ Sbjct: 461 STGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIG 520 Query: 300 PFVAKDF 306 F ++DF Sbjct: 521 EFNSEDF 527 >gi|15672795|ref|NP_266969.1| hypothetical protein L0206 [Lactococcus lactis subsp. lactis Il1403] gi|12723735|gb|AAK04911.1|AE006314_9 cell division protein FtsY [Lactococcus lactis subsp. lactis Il1403] gi|326406364|gb|ADZ63435.1| signal recognition particle docking protein FtsY [Lactococcus lactis subsp. lactis CV56] Length = 459 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 124/293 (42%), Positives = 184/293 (62%), Gaps = 9/293 (3%) Query: 15 RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 +K + T +G ++ ++ R +D+ EELE+ LI SD+GV +A ++ EEL + Sbjct: 156 KKYEQSLTLTRKTFSDGFNELFANFRTVDEEFFEELEETLIMSDVGVDLAMEVTEEL--R 213 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSK----PFNWDF-SHRPHVILVVGVNGVGKTTVI 128 + AK V+ + D+ +LI + ++ P D S V L VGVNGVGKTT I Sbjct: 214 KEAKLVNAKST-DDLRQLIIEKIVDKFDGEKLPTKLDIQSDGLSVFLFVGVNGVGKTTTI 272 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ + + G KV+LAA DTFR+ AIDQL W +R+ + V GSD AA+ ++A + Sbjct: 273 GKLAARYKNEGKKVLLAAADTFRAGAIDQLVEWGNRSGVEVVTKPAGSDPAAVVFDALAK 332 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ D+L++DTAGRL N LM + K+ +V+KR P APH + LDATTGQNA++Q Sbjct: 333 AKAENYDILLVDTAGRLQNKDNLMKELEKIGKVIKREIPDAPHETILALDATTGQNAIQQ 392 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F AV TG+ +TK+DG+A+GG ++ IV + KIPV +G+GE +NDL+ F Sbjct: 393 AKEFSAVTPITGIALTKLDGSAKGGIVLSIVQSLKIPVKLIGLGEKLNDLQDF 445 >gi|77409117|ref|ZP_00785832.1| signal recognition particle-docking protein FtsY [Streptococcus agalactiae COH1] gi|16588994|gb|AAL26980.1|AF380672_4 putative signal recognition particle [Streptococcus agalactiae] gi|33439457|gb|AAO49795.1| putative signal particle [Streptococcus agalactiae serogroup III] gi|77172295|gb|EAO75449.1| signal recognition particle-docking protein FtsY [Streptococcus agalactiae COH1] Length = 536 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 128/307 (41%), Positives = 184/307 (59%), Gaps = 11/307 (3%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 K S+ + R L K S +L +++ RR+D+ EELE++LI SD+GV VA Sbjct: 227 KAESQEEKYNRSLKKTRTGFSARLNAFLSNF---RRVDEEFFEELEEMLILSDVGVNVAT 283 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFSHRPHVILVVGV 119 ++ E+L RY + + D+ +I + L+ + + +N +F V+L VGV Sbjct: 284 QLTEDL---RYEAKLENAKKSEDLKRVIVEKLVEIYEKDGIYNEAINFQEGLTVMLFVGV 340 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R V E +D A Sbjct: 341 NGVGKTTSIGKLAHQYKSQGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGEKKADPA 400 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++ ++A A+ VDVL+IDTAGRL N LMA + K+ R++KR+ P APH L LDA Sbjct: 401 SVVFDGMEKAVAQGVDVLLIDTAGRLQNKENLMAELEKIGRIIKRVVPDAPHETLLALDA 460 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV F+G GE I+D+ Sbjct: 461 STGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIG 520 Query: 300 PFVAKDF 306 F ++DF Sbjct: 521 EFNSEDF 527 >gi|22536891|ref|NP_687742.1| signal recognition particle-docking protein FtsY [Streptococcus agalactiae 2603V/R] gi|25010804|ref|NP_735199.1| signal recognition particle-docking protein FtsY [Streptococcus agalactiae NEM316] gi|76798202|ref|ZP_00780453.1| cell division protein FtsY [Streptococcus agalactiae 18RS21] gi|77406417|ref|ZP_00783476.1| signal recognition particle-docking protein FtsY [Streptococcus agalactiae H36B] gi|77410752|ref|ZP_00787110.1| signal recognition particle-docking protein FtsY [Streptococcus agalactiae CJB111] gi|22533741|gb|AAM99614.1|AE014224_17 signal recognition particle-docking protein FtsY [Streptococcus agalactiae 2603V/R] gi|23095158|emb|CAD46393.1| Unknown [Streptococcus agalactiae NEM316] gi|76586465|gb|EAO62972.1| cell division protein FtsY [Streptococcus agalactiae 18RS21] gi|77163131|gb|EAO74084.1| signal recognition particle-docking protein FtsY [Streptococcus agalactiae CJB111] gi|77174981|gb|EAO77791.1| signal recognition particle-docking protein FtsY [Streptococcus agalactiae H36B] Length = 536 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 128/307 (41%), Positives = 184/307 (59%), Gaps = 11/307 (3%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 K S+ + R L K S +L +++ RR+D+ EELE++LI SD+GV VA Sbjct: 227 KAESQEEKYNRSLKKTRTGFSARLNAFLSNF---RRVDEEFFEELEEMLILSDVGVNVAT 283 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFSHRPHVILVVGV 119 ++ E+L RY + + D+ +I + L+ + + +N +F V+L VGV Sbjct: 284 QLTEDL---RYEAKLENAKKSEDLKRVIVEKLVEIYEKDGIYNEAINFQEGLTVMLFVGV 340 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R V E +D A Sbjct: 341 NGVGKTTSIGKLAHQYKSQGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGEEKADPA 400 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++ ++A A+ VDVL+IDTAGRL N LMA + K+ R++KR+ P APH L LDA Sbjct: 401 SVVFDGMEKAVAQGVDVLLIDTAGRLQNKENLMAELEKIGRIIKRVVPDAPHETLLALDA 460 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV F+G GE I+D+ Sbjct: 461 STGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIG 520 Query: 300 PFVAKDF 306 F ++DF Sbjct: 521 EFNSEDF 527 >gi|303256295|ref|ZP_07342311.1| signal recognition particle-docking protein FtsY [Burkholderiales bacterium 1_1_47] gi|330998992|ref|ZP_08322717.1| signal recognition particle-docking protein FtsY [Parasutterella excrementihominis YIT 11859] gi|302861024|gb|EFL84099.1| signal recognition particle-docking protein FtsY [Burkholderiales bacterium 1_1_47] gi|329575734|gb|EGG57260.1| signal recognition particle-docking protein FtsY [Parasutterella excrementihominis YIT 11859] Length = 315 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 126/315 (40%), Positives = 188/315 (59%), Gaps = 9/315 (2%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 E W +L +G T + L I + +D+ E+LE +I +DIGV + I+E Sbjct: 6 EKTGWFARLKQGLRKTQVNL----VGIFTGGVVDEAFLEDLEFQMISADIGVETSALILE 61 Query: 69 ELLTKRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L + K + Q V + E+I +L P N+D H+P VI++ GVNG GKTT Sbjct: 62 RLRERIKLKGLKTQDEVKVALKEIIADILRPCEASLNFD-EHKPLVIMMCGVNGAGKTTT 120 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+K + KV+LAA DTFR+AA +QL +W DR + + E G D A++AY+A Sbjct: 121 IGKLAKHFAQLNKKVLLAAADTFRAAAKEQLAVWGDRNQIEVISQEKG-DPASVAYDAIS 179 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 + K +D++++DTAGRL + LM + ++ +V + APH V+ VLD T GQNAL Sbjct: 180 SGRKKGMDIVMVDTAGRLPTQTNLMNELARIRKVQGKAMEGAPHEVILVLDGTNGQNALM 239 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK--IPVYFLGVGEGINDLEPFVAKD 305 Q + F AG TGLI+TK+DGTA+GG L+ + + + +P+Y++GVGE I+DL+PF A + Sbjct: 240 QAKAFDEAAGLTGLIITKLDGTAKGGVLVALANSREKPLPIYYIGVGETIDDLQPFKADE 299 Query: 306 FSAVITGCLDYGEEK 320 F+A + G G +K Sbjct: 300 FAAALVGLDQIGGKK 314 >gi|157692275|ref|YP_001486737.1| signal recognition particle-docking protein [Bacillus pumilus SAFR-032] gi|157681033|gb|ABV62177.1| signal recognition particle-docking protein [Bacillus pumilus SAFR-032] Length = 328 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 131/321 (40%), Positives = 192/321 (59%), Gaps = 31/321 (9%) Query: 11 LSWIRKLTKGFA----STSLKLKEG-----------ITDIISS-RRLDDGVREELEDLLI 54 +S+ +KL + F S S K K+G + ++IS R++D+ EELE++LI Sbjct: 1 MSFFKKLKEKFTQQTDSVSEKFKDGLEKTRNSFQGRVNELISRYRKVDEDFFEELEEVLI 60 Query: 55 RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH----- 109 +D+G ++++EL K+V + R + D SE+ + L + +N Sbjct: 61 GADVGFTTVMEMIDEL-----KKEVKL-RNIQDPSEVQSVISEKLVEIYNSGEEQISALN 114 Query: 110 ----RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 R ++IL VGVNGVGKTT IGKL+ K+ + G V+LAAGDTFR+ AI+QL++W +R+ Sbjct: 115 IEDGRLNIILFVGVNGVGKTTTIGKLANKLKNEGKSVILAAGDTFRAGAIEQLEVWGERS 174 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 V GSD AA+ Y+A + A+AK DVLI DTAGRL N LM + K+ RV++R Sbjct: 175 GVPVVKQTAGSDPAAVIYDAVQSAKAKNADVLICDTAGRLQNKVNLMKELEKVKRVIERE 234 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P APH VL LDATTGQNA+ Q + F TG+ +TK+DGTA+GG ++ I IP Sbjct: 235 VPDAPHEVLLALDATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELNIP 294 Query: 286 VYFLGVGEGINDLEPFVAKDF 306 V +G+GE ++DL+ F A+ + Sbjct: 295 VKLVGLGEKVDDLQEFDAESY 315 >gi|227515696|ref|ZP_03945745.1| signal recognition particle receptor [Lactobacillus fermentum ATCC 14931] gi|227085944|gb|EEI21256.1| signal recognition particle receptor [Lactobacillus fermentum ATCC 14931] Length = 526 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 113/266 (42%), Positives = 162/266 (60%), Gaps = 18/266 (6%) Query: 52 LLIRSDIGVAVAQKIVEELLTK------RYAKDVS---VQRV--LYDVSELIHKMLMPLS 100 +LI SD+G +A K+ + L + + +DVS ++++ LYD + + + ++ Sbjct: 256 MLIESDVGYEMAMKLSDSLREEVRLQNAKNKQDVSNVIIEKMVDLYDEAGAGEQTTLTMA 315 Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 P VI+ VGVNG GKTT IGK++ + G +V+LAA DTFR+ A +QL++ Sbjct: 316 -------DQGPTVIMFVGVNGAGKTTTIGKMAARFKGQGKRVLLAAADTFRAGATEQLEV 368 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 WA R D V SD AA+ ++A +A+ DVL +DTAGRL N LM + KM R Sbjct: 369 WAQRDGVDIVTGPENSDPAAVVFDAVTKAKKDNYDVLFVDTAGRLQNKVNLMNELAKMKR 428 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 +L R P APH VL VLDATTGQNAL Q ++F TG+++TK+DGTARGG ++ I Sbjct: 429 ILTREIPDAPHEVLLVLDATTGQNALTQAKLFKETTDVTGIVLTKLDGTARGGIVLAIRN 488 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDF 306 +PV F+G+GE ++DLE F A+DF Sbjct: 489 ELHLPVKFVGLGEKVSDLEEFNAQDF 514 >gi|145590107|ref|YP_001156704.1| signal recognition particle-docking protein FtsY [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048513|gb|ABP35140.1| signal recognition particle-docking protein FtsY [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 296 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 123/290 (42%), Positives = 172/290 (59%), Gaps = 10/290 (3%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL----TKRYAKDVSVQR 83 L++ + + + + D+ + LE+ LI+SD+G+ ++++ +L +++ + +Q Sbjct: 4 LRKTLGSLFKTSKTDEAWFDTLEESLIQSDVGLPTTEQLIIKLRKAAKSEKASSPEELQA 63 Query: 84 VLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 +L + L P P D H P V LVVGVNG GKTT IGKL K G V Sbjct: 64 LLIQEVSTLLGSLEPNPNPLFTDQKIHIPEVWLVVGVNGAGKTTTIGKLCKLFQSQGKSV 123 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +LAAGDTFR+AA +QL+ W R D V ++ G DAAA+A++A A ++K D+LIIDTA Sbjct: 124 LLAAGDTFRAAARNQLQEWGGRNQVD-VITQDGGDAAAVAHDAIHAANSRKSDILIIDTA 182 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRL LM + K+ RV+ + P APH L VLD TGQN L QV+ FHA G TGLI Sbjct: 183 GRLATQDHLMEELKKVKRVIGKALPGAPHHTLLVLDGNTGQNGLSQVKAFHAALGLTGLI 242 Query: 263 MTKMDGTARGGGLIPIVVT----HKIPVYFLGVGEGINDLEPFVAKDFSA 308 +TK+DGTA+GG + + T K V LG GEGI+DL PF A +S+ Sbjct: 243 VTKLDGTAKGGVICALAHTLKDEPKPAVLALGKGEGIDDLVPFTAHQYSS 292 >gi|77413067|ref|ZP_00789268.1| signal recognition particle-docking protein FtsY [Streptococcus agalactiae 515] gi|77160860|gb|EAO71970.1| signal recognition particle-docking protein FtsY [Streptococcus agalactiae 515] Length = 536 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 128/307 (41%), Positives = 184/307 (59%), Gaps = 11/307 (3%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 K S+ + R L K S +L +++ RR+D+ EELE++LI SD+GV VA Sbjct: 227 KAESQEEKYNRSLKKTRTGFSARLNAFLSNF---RRVDEEFFEELEEMLILSDVGVNVAT 283 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFSHRPHVILVVGV 119 ++ E+L RY + + D+ +I + L+ + + +N +F V+L VGV Sbjct: 284 QLTEDL---RYEAKLENAKKSEDLKRVIVEKLVEIYEKDGIYNEAINFQEGLTVMLFVGV 340 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R V E +D A Sbjct: 341 NGVGKTTSIGKLAHQYKSQGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGEEKADPA 400 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++ ++A A+ VDVL+IDTAGRL N LMA + K+ R++KR+ P APH L LDA Sbjct: 401 SVVFDGMEKAIAQGVDVLLIDTAGRLQNKENLMAELEKIGRIIKRVVPDAPHETLLALDA 460 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV F+G GE I+D+ Sbjct: 461 STGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIG 520 Query: 300 PFVAKDF 306 F ++DF Sbjct: 521 EFNSEDF 527 >gi|184155712|ref|YP_001844052.1| signal recognition particle receptor [Lactobacillus fermentum IFO 3956] gi|183227056|dbj|BAG27572.1| signal recognition particle receptor [Lactobacillus fermentum IFO 3956] Length = 509 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 113/266 (42%), Positives = 162/266 (60%), Gaps = 18/266 (6%) Query: 52 LLIRSDIGVAVAQKIVEELLTK------RYAKDVS---VQRV--LYDVSELIHKMLMPLS 100 +LI SD+G +A K+ + L + + +DVS ++++ LYD + + + ++ Sbjct: 239 MLIESDVGYEMAMKLSDSLREEVRLQNAKNKQDVSNVIIEKMVNLYDEAGAGEQTTLTMA 298 Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 P VI+ VGVNG GKTT IGK++ + G +V+LAA DTFR+ A +QL++ Sbjct: 299 -------DQGPTVIMFVGVNGAGKTTTIGKMAARFKGQGKRVLLAAADTFRAGATEQLEV 351 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 WA R D V SD AA+ ++A +A+ DVL +DTAGRL N LM + KM R Sbjct: 352 WAQRDGVDIVTGPENSDPAAVVFDAVTKAKKDNYDVLFVDTAGRLQNKVNLMNELAKMKR 411 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 +L R P APH VL VLDATTGQNAL Q ++F TG+++TK+DGTARGG ++ I Sbjct: 412 ILTREIPDAPHEVLLVLDATTGQNALTQAKLFKETTDVTGIVLTKLDGTARGGIVLAIRN 471 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDF 306 +PV F+G+GE ++DLE F A+DF Sbjct: 472 ELHLPVKFVGLGEKVSDLEEFNAQDF 497 >gi|281491307|ref|YP_003353287.1| signal recognition particle docking protein FtsY [Lactococcus lactis subsp. lactis KF147] gi|281375048|gb|ADA64566.1| Signal recognition particle docking protein FtsY [Lactococcus lactis subsp. lactis KF147] Length = 459 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 123/298 (41%), Positives = 184/298 (61%), Gaps = 19/298 (6%) Query: 15 RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 +K + T +G ++ ++ R +D+ EELE+ LI SD+GV +A ++ EEL + Sbjct: 156 KKYEQSLTLTRKTFSDGFNELFANFRTVDEEFFEELEETLIMSDVGVDLAMEVTEEL--R 213 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP----------HVILVVGVNGVG 123 + AK V+ + D+ +LI + ++ +D P V L VGVNGVG Sbjct: 214 KEAKLVNAKST-DDLRQLIIEKIVD-----KFDGEKLPTKLDIQTDGLSVFLFVGVNGVG 267 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+ + + G KV+LAA DTFR+ AIDQL W +R+ + V GSD AA+ + Sbjct: 268 KTTTIGKLAARYKNEGKKVLLAAADTFRAGAIDQLVEWGNRSGVEVVTKPAGSDPAAVVF 327 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A +A+A+ D+L++DTAGRL N LM + K+ +V+KR P APH + LDATTGQ Sbjct: 328 DALAKAKAENYDILLVDTAGRLQNKDNLMKELEKIGKVIKREIPDAPHETILALDATTGQ 387 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 NA++Q + F AV TG+ +TK+DG+A+GG ++ IV + KIPV +G+GE +NDL+ F Sbjct: 388 NAIQQAKEFSAVTPITGIALTKLDGSAKGGIVLSIVQSLKIPVKLIGLGEKLNDLQDF 445 >gi|225870866|ref|YP_002746813.1| cell division protein FtsY [Streptococcus equi subsp. equi 4047] gi|225700270|emb|CAW94513.1| putative cell division protein FtsY [Streptococcus equi subsp. equi 4047] Length = 485 Score = 206 bits (524), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 123/304 (40%), Positives = 177/304 (58%), Gaps = 11/304 (3%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 S+ + R L K S +L + RR+D+ E+LE+LLI SD+GV VA + Sbjct: 179 SDQEKYKRSLKKTRTGFSARLNSFFANF---RRVDEDFFEDLEELLILSDVGVHVATTLT 235 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK---PFNWDFSHRP--HVILVVGVNGV 122 EEL RY + + + LI L+ + + +N ++P V+L VGVNGV Sbjct: 236 EEL---RYEAKLENAKKPEALKRLIIDKLVAIYEGDGRYNEAIHYQPGLTVMLFVGVNGV 292 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+ + G KVML A DTFR+ A+ QL W R + +D A++ Sbjct: 293 GKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVITGPEKADPASVV 352 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++ ++A A++ D+L+IDTAGRL N LMA + K+ R++KR+ P APH L LDA+TG Sbjct: 353 FDGVERAVAERADILLIDTAGRLQNKDNLMAELEKIGRIIKRVIPDAPHETLLALDASTG 412 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV +G GE I+D+ F Sbjct: 413 QNALSQAKEFSKITPLTGLILTKIDGTAKGGIVLAIRQELDIPVKLIGFGEAIDDIGEFH 472 Query: 303 AKDF 306 ++DF Sbjct: 473 SEDF 476 >gi|260437029|ref|ZP_05790845.1| signal recognition particle-docking protein FtsY [Butyrivibrio crossotus DSM 2876] gi|292810338|gb|EFF69543.1| signal recognition particle-docking protein FtsY [Butyrivibrio crossotus DSM 2876] Length = 311 Score = 206 bits (524), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 125/298 (41%), Positives = 181/298 (60%), Gaps = 4/298 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +KL G + T + G+ I ++D+ EELE+ LI DIGV +KI++ Sbjct: 1 MGFFKKLVSGLSKTRNNIVSGLNSIFHGFSKIDEDFYEELEETLIMGDIGVETTEKIIDG 60 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVI 128 L K + ++ D+ LI + + N ++F +R VILV+GVNGVGKTT I Sbjct: 61 LRQKVREDKIKDPQLCKDI--LIDSIKEQMDLGENAYEFENRRSVILVIGVNGVGKTTSI 118 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GK++ + G KV+LAA DTFR+AAI+QL+ WA R S D + GSD A+ ++A + Sbjct: 119 GKIAAGLKKQGKKVILAAADTFRAAAIEQLEEWAKRASVDIIAQNEGSDPGAVVFDALQA 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+++ DVLI DTAGRLHN LM + K+ +++ R P A L VLD TTGQNAL Q Sbjct: 179 AKSRNADVLICDTAGRLHNKKNLMDELRKIDKIITREFPDAYRENLIVLDGTTGQNALSQ 238 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++ F V +G+I+TKMDGTA+GG + I + IPV ++GVGE I DL+ F + +F Sbjct: 239 LKEFKDVCDVSGIILTKMDGTAKGGIAVAIQSEYNIPVKYIGVGEQIEDLQKFDSDEF 296 >gi|295091755|emb|CBK77862.1| signal recognition particle-docking protein FtsY [Clostridium cf. saccharolyticum K10] Length = 311 Score = 206 bits (524), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 130/301 (43%), Positives = 183/301 (60%), Gaps = 14/301 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L +G T + GI I S +DD EE+E+ LI D+G+ I+E+L Sbjct: 8 FFGRLVEGLTKTRNSIVAGIDTIFSGFSAIDDDFYEEIEETLIMGDLGIQTTMAIMEDLR 67 Query: 72 TK---RYAKDVSVQRVLYDVSELIHKML---MPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 K R+ K+ S D EL+ + + M L + ++F +R V+LV+GVNGVGKT Sbjct: 68 AKVKERHIKEPS------DCKELLIESIRSQMDLGEN-AYEFENRKSVVLVIGVNGVGKT 120 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T +GKL+ ++ G KV+LAA DTFR+AAI+QL WA+R D + + GSD AA+ Y+A Sbjct: 121 TSVGKLAGQLKGQGKKVILAAADTFRAAAIEQLTEWANRAGVDLIAQQEGSDPAAVIYDA 180 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+++ DVLI DTAGRLHN LM + K+ R++ + P A L VLD TTGQNA Sbjct: 181 IAAAKSRHADVLICDTAGRLHNKKNLMEELKKINRIIDKEFPEAYRETLVVLDGTTGQNA 240 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L Q + F VA TG+I+TK+DGTA+GG + I IPV ++G+GE I+DL+ F A D Sbjct: 241 LSQAKQFMEVADITGIILTKLDGTAKGGIAVAIQSELGIPVKYVGIGEKIDDLQKFNAND 300 Query: 306 F 306 F Sbjct: 301 F 301 >gi|327470655|gb|EGF16111.1| cell division protein FtsY [Streptococcus sanguinis SK330] Length = 512 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 115/258 (44%), Positives = 159/258 (61%), Gaps = 8/258 (3%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108 I SD+GV VA + EEL RY + + + +LI + L+ + + FN +F Sbjct: 249 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 305 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + V+L VGVNGVGKTT IGKL+ K G KVML A DTFR+ A+ QL W R Sbjct: 306 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 365 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V SD A++ Y+ ++AQA++VDVL+IDTAGRL N LMA + K+ R++KR+DP Sbjct: 366 VVTGPEKSDPASVVYDGMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 425 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 APH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV Sbjct: 426 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 485 Query: 289 LGVGEGINDLEPFVAKDF 306 +G GE I+D+ F +++F Sbjct: 486 IGFGEKIDDIGEFNSENF 503 >gi|291459097|ref|ZP_06598487.1| signal recognition particle-docking protein FtsY [Oribacterium sp. oral taxon 078 str. F0262] gi|291418351|gb|EFE92070.1| signal recognition particle-docking protein FtsY [Oribacterium sp. oral taxon 078 str. F0262] Length = 291 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 116/278 (41%), Positives = 164/278 (58%), Gaps = 6/278 (2%) Query: 32 ITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90 + +I SS + DD EELED +I SD+G A +I++ + + K ++ + DV + Sbjct: 9 LNNIFSSSEVADDSFYEELEDAMIMSDVGADAALRIIDAVRREAKRKGCNLTK---DVRK 65 Query: 91 LIHKMLMPLSKPFN--WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 ++ L L + ++F + +I V+GVNGVGKTT IGKL++ G KV+LAA D Sbjct: 66 ILKDYLYELMRTDESYYEFERQKSIISVIGVNGVGKTTSIGKLAEHFKSMGKKVILAAAD 125 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+ AI+QL W R D + GSD AA+ ++A + +AK D+LIIDTAGRLHN Sbjct: 126 TFRAGAIEQLVEWGKRVGVDVIRQREGSDPAAVVFDALQSFKAKNADILIIDTAGRLHNK 185 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM +GK+ R++ R L VLDATTGQNAL Q +F + TG+I+TKMDG Sbjct: 186 KNLMQELGKINRIIDREFSEGFRETLVVLDATTGQNALSQARVFQETSQVTGIILTKMDG 245 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +ARGG + + IPV ++G GE DL F A + Sbjct: 246 SARGGVALSVQSELGIPVKYIGSGERAKDLHRFDAGSY 283 >gi|194014405|ref|ZP_03053022.1| signal recognition particle-docking protein FtsY [Bacillus pumilus ATCC 7061] gi|194013431|gb|EDW22996.1| signal recognition particle-docking protein FtsY [Bacillus pumilus ATCC 7061] Length = 328 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 131/321 (40%), Positives = 192/321 (59%), Gaps = 31/321 (9%) Query: 11 LSWIRKLTKGFA----STSLKLKEG-----------ITDIISS-RRLDDGVREELEDLLI 54 +S+ +KL + F S S K K+G + ++IS R++D+ EELE++LI Sbjct: 1 MSFFKKLKEKFTQQTDSVSEKFKDGLEKTRNSFQGRVNELISRYRKVDEDFFEELEEVLI 60 Query: 55 RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH----- 109 +D+G ++++EL K+V + R + D SE+ + L + +N Sbjct: 61 GADVGFTTVMELIDEL-----KKEVKL-RNIQDPSEVQSVISEKLVEIYNSGEEQISALN 114 Query: 110 ----RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 R ++IL VGVNGVGKTT IGKL+ K+ + G V+LAAGDTFR+ AI+QL++W +R+ Sbjct: 115 IEDGRLNIILFVGVNGVGKTTTIGKLANKLKNDGKSVILAAGDTFRAGAIEQLEVWGERS 174 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 V GSD AA+ Y+A + A+AK DVLI DTAGRL N LM + K+ RV++R Sbjct: 175 GVPVVKQTAGSDPAAVIYDAVQSAKAKNADVLICDTAGRLQNKVNLMKELEKVKRVIERE 234 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P APH VL LDATTGQNA+ Q + F TG+ +TK+DGTA+GG ++ I IP Sbjct: 235 VPDAPHEVLLALDATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELNIP 294 Query: 286 VYFLGVGEGINDLEPFVAKDF 306 V +G+GE ++DL+ F A+ + Sbjct: 295 VKLVGLGEKVDDLQEFDAESY 315 >gi|332362458|gb|EGJ40258.1| cell division protein FtsY [Streptococcus sanguinis SK1056] Length = 506 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 115/258 (44%), Positives = 160/258 (62%), Gaps = 8/258 (3%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108 I SD+GV VA + EEL RY + + + +LI + L+ + + FN +F Sbjct: 243 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 299 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + V+L VGVNGVGKTT IGKL+ K G KVML A DTFR+ A+ QL W R Sbjct: 300 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 359 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V SD A++ Y++ ++AQA++VDVL+IDTAGRL N LMA + K+ R++KR+DP Sbjct: 360 VVTGPEKSDPASVVYDSMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 419 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 APH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV Sbjct: 420 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 479 Query: 289 LGVGEGINDLEPFVAKDF 306 +G GE I+D+ F +++F Sbjct: 480 IGFGEKIDDIGEFNSENF 497 >gi|260588640|ref|ZP_05854553.1| signal recognition particle-docking protein FtsY [Blautia hansenii DSM 20583] gi|331082009|ref|ZP_08331137.1| signal recognition particle-docking protein FtsY [Lachnospiraceae bacterium 6_1_63FAA] gi|260541115|gb|EEX21684.1| signal recognition particle-docking protein FtsY [Blautia hansenii DSM 20583] gi|330405604|gb|EGG85134.1| signal recognition particle-docking protein FtsY [Lachnospiraceae bacterium 6_1_63FAA] Length = 317 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 124/303 (40%), Positives = 188/303 (62%), Gaps = 10/303 (3%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67 E + ++L +G + T + GI I S +DD EE+E++L+ D+G+ I+ Sbjct: 6 EKKGFFKRLVEGLSKTRENIVSGIDSIFSGYSSIDDDFYEEIEEILVMGDLGINTTTAII 65 Query: 68 EEL---LTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 E L ++K++ K+ + +++L D K M + + ++F +R VILV+GVNGVG Sbjct: 66 ERLKEQVSKQHIKEPMECKKLLMDSI----KEQMQVGETA-YEFENRKSVILVIGVNGVG 120 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT +GKL+ K+ G KV++AA DTFR+AA +QL WA+R + + + G+D A++ Y Sbjct: 121 KTTSVGKLAGKLKGQGKKVIMAAADTFRAAAGEQLTQWANRAGVELIGGQDGADPASVVY 180 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A +A+ DVLI DTAGRLHN LM + K+ R++++ P A L VLD TTGQ Sbjct: 181 DAIAATKARNADVLICDTAGRLHNKKNLMEELRKIYRIIEKEYPEAYLETLVVLDGTTGQ 240 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NAL Q F+ VA TG+I+TK+DGTA+GG + I IPV ++GVGEGI+DL+ F + Sbjct: 241 NALAQARQFNEVANVTGIILTKLDGTAKGGIAVAIQSELDIPVKYIGVGEGIDDLQKFNS 300 Query: 304 KDF 306 +F Sbjct: 301 DEF 303 >gi|125718364|ref|YP_001035497.1| SRPR, signal recognition particle-docking protein [Streptococcus sanguinis SK36] gi|125498281|gb|ABN44947.1| SRPR, signal recognition particle-docking protein, putative [Streptococcus sanguinis SK36] gi|327474735|gb|EGF20140.1| cell division protein FtsY [Streptococcus sanguinis SK408] Length = 512 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 115/258 (44%), Positives = 159/258 (61%), Gaps = 8/258 (3%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108 I SD+GV VA + EEL RY + + + +LI + L+ + + FN +F Sbjct: 249 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 305 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + V+L VGVNGVGKTT IGKL+ K G KVML A DTFR+ A+ QL W R Sbjct: 306 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 365 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V SD A++ Y+ ++AQA++VDVL+IDTAGRL N LMA + K+ R++KR+DP Sbjct: 366 VVTGPEKSDPASVVYDGMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 425 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 APH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV Sbjct: 426 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 485 Query: 289 LGVGEGINDLEPFVAKDF 306 +G GE I+D+ F +++F Sbjct: 486 IGFGEKIDDIGEFNSENF 503 >gi|332358675|gb|EGJ36498.1| cell division protein FtsY [Streptococcus sanguinis SK355] Length = 512 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 115/258 (44%), Positives = 159/258 (61%), Gaps = 8/258 (3%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108 I SD+GV VA + EEL RY + + + +LI + L+ + + FN +F Sbjct: 249 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 305 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + V+L VGVNGVGKTT IGKL+ K G KVML A DTFR+ A+ QL W R Sbjct: 306 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 365 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V SD A++ Y+ ++AQA++VDVL+IDTAGRL N LMA + K+ R++KR+DP Sbjct: 366 VVTGPEKSDPASVVYDGMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 425 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 APH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV Sbjct: 426 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 485 Query: 289 LGVGEGINDLEPFVAKDF 306 +G GE I+D+ F +++F Sbjct: 486 IGFGEKIDDIGEFNSENF 503 >gi|148244853|ref|YP_001219547.1| cell division transporter substrate-binding protein FtsY [Candidatus Vesicomyosocius okutanii HA] gi|146326680|dbj|BAF61823.1| cell division transporter substrate-binding protein FtsY [Candidatus Vesicomyosocius okutanii HA] Length = 319 Score = 206 bits (523), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 106/256 (41%), Positives = 162/256 (63%), Gaps = 11/256 (4%) Query: 56 SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF--NWDFS---HR 110 +D+G+ KI++ T++ A ++ L + L + L+K F N + + Sbjct: 63 ADVGINTTDKIIKS--TRKNAS----RKTLKNAESLYQFLKDELAKLFIENNQLNISINE 116 Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VILVVGVNG GKTT+IGKL+K + G VMLAAGDTFR+AAI+QLKIW R + V Sbjct: 117 TFVILVVGVNGAGKTTLIGKLAKSFQNQGKSVMLAAGDTFRAAAIEQLKIWGQRNNIPVV 176 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 +G+D A++ ++A++ AQAK +D+L+ DTAGRLH LM + K+ RV+ + + +AP Sbjct: 177 AKTLGADTASVIFDAYQSAQAKNIDILLADTAGRLHTQDNLMQELAKIKRVITKQNINAP 236 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 H + V+D +GQN + Q + F+ +G+ +TK+DGTA+GGGL I +P+ ++G Sbjct: 237 HETMLVIDGGSGQNIINQAKEFNKAVNLSGISITKLDGTAKGGGLFSIADELNLPIRYIG 296 Query: 291 VGEGINDLEPFVAKDF 306 +GEGI+DL+ F K+F Sbjct: 297 IGEGIDDLKIFQPKEF 312 >gi|76788040|ref|YP_329475.1| signal recognition particle-docking protein FtsY [Streptococcus agalactiae A909] gi|76563097|gb|ABA45681.1| signal recognition particle-docking protein FtsY [Streptococcus agalactiae A909] Length = 536 Score = 206 bits (523), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 128/307 (41%), Positives = 183/307 (59%), Gaps = 11/307 (3%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 K S+ + R L K S +L +++ RR+D+ EELE++LI SD+GV VA Sbjct: 227 KAESQEEKYNRSLKKTRTGFSARLNAFLSNF---RRVDEEFFEELEEMLILSDVGVNVAT 283 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFSHRPHVILVVGV 119 ++ E+L RY + + D+ +I + L+ + + +N +F V+L VGV Sbjct: 284 QLTEDL---RYEAKLENAKKSEDLKRVIVEKLVEIYEKDGIYNEAINFQEGLTVMLFVGV 340 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R V E +D A Sbjct: 341 NGVGKTTSIGKLAHQYKSQGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGEEKADPA 400 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++ ++A A+ VDVL+IDTAGRL N LMA + K+ R++KR+ P APH L LDA Sbjct: 401 SVVFDGMEKAVAQGVDVLLIDTAGRLQNKENLMAELEKIGRIIKRVVPDAPHETLLALDA 460 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNAL Q + F + TGLI+TK+DGTA+GG + I IPV F+G GE I+D+ Sbjct: 461 STGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVALAIRQELDIPVKFIGFGEKIDDIG 520 Query: 300 PFVAKDF 306 F ++DF Sbjct: 521 EFNSEDF 527 >gi|171780112|ref|ZP_02921016.1| hypothetical protein STRINF_01900 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281460|gb|EDT46895.1| hypothetical protein STRINF_01900 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 430 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 133/318 (41%), Positives = 188/318 (59%), Gaps = 14/318 (4%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62 N V +E + R L K S +L + + RR+D+ EELE++LI SD+GV V Sbjct: 119 NAPVETEEEKYNRSLKKTRTGFSARLNAFLANF---RRVDEDFFEELEEMLILSDVGVNV 175 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFSHRPHVILVV 117 A ++ E+L RY + + D+ +I + L+ + + FN +F V+L V Sbjct: 176 ATQLTEDL---RYEAKLENAKKADDLRRVIIEKLVEIYEKDGVFNEQINFQDGLTVMLFV 232 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 GVNGVGKTT IGKL+ K + G KVML A DTFR+ A+ QL W R V +D Sbjct: 233 GVNGVGKTTSIGKLAYKYKNEGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKAD 292 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 A++ ++ ++A A+ VDVL+IDTAGRL N LMA + K+ R++KR+ P APH L L Sbjct: 293 PASVVFDGMERAVAENVDVLLIDTAGRLQNKDNLMAELEKIGRIIKRVVPDAPHETLLAL 352 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA+TGQNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV F+G GE I+D Sbjct: 353 DASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDD 412 Query: 298 LEPFVAKDFSAVITGCLD 315 + F ++DF I G L+ Sbjct: 413 IGEFDSEDF---IRGLLE 427 >gi|326692471|ref|ZP_08229476.1| signal recognition particle-docking protein FtsY [Leuconostoc argentinum KCTC 3773] Length = 312 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 123/311 (39%), Positives = 182/311 (58%), Gaps = 19/311 (6%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 V +E + + LTK + K + + + R +D+ EELE+ L+ +D+G +A K Sbjct: 1 VVTEQEIYTQGLTKTRTGFAAKFNQFLANF---RSVDENFFEELEETLVGADVGFDMAIK 57 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRPHVIL 115 I +EL + K + +R DV ++I K ++ + + FN ++ VIL Sbjct: 58 ISDEL--REEVKLANAKRP-EDVKQVIIKKMVDMYEADGVNEDATMHFN---ANGTTVIL 111 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGKL+ K G V+LAA DTFR+ A QL+ W +R V + Sbjct: 112 FVGVNGVGKTTTIGKLATKYQQQGKSVLLAAADTFRAGATKQLQEWGERAHVPVVAGKEK 171 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 +D A++ YEA +A+ + D+L +DTAGRL NN LM + KM R+++R P APH VL Sbjct: 172 ADPASVVYEAVAKARDEHYDILFVDTAGRLQNNVNLMQELEKMKRIIQREIPDAPHEVLL 231 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 VLDATTGQNAL+Q ++F + TG+++TKMDGTA+GG + I ++PV ++G GE Sbjct: 232 VLDATTGQNALQQAKLFKDSSDVTGIVLTKMDGTAKGGIVFAIRNEMQLPVKWIGFGEKA 291 Query: 296 NDLEPFVAKDF 306 DL F ++F Sbjct: 292 QDLREFKPEEF 302 >gi|324991500|gb|EGC23433.1| cell division protein FtsY [Streptococcus sanguinis SK353] Length = 504 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 115/258 (44%), Positives = 159/258 (61%), Gaps = 8/258 (3%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108 I SD+GV VA + EEL RY + + + +LI + L+ + + FN +F Sbjct: 241 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 297 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + V+L VGVNGVGKTT IGKL+ K G KVML A DTFR+ A+ QL W R Sbjct: 298 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 357 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V SD A++ Y+ ++AQA++VDVL+IDTAGRL N LMA + K+ R++KR+DP Sbjct: 358 VVTGPEKSDPASVVYDGMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 417 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 APH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV Sbjct: 418 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 477 Query: 289 LGVGEGINDLEPFVAKDF 306 +G GE I+D+ F +++F Sbjct: 478 IGFGEKIDDIGEFNSENF 495 >gi|315640110|ref|ZP_07895232.1| cell division protein FtsY [Enterococcus italicus DSM 15952] gi|315484087|gb|EFU74561.1| cell division protein FtsY [Enterococcus italicus DSM 15952] Length = 334 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 116/264 (43%), Positives = 165/264 (62%), Gaps = 16/264 (6%) Query: 53 LIRSDIGVAVAQKIVEELLTK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--- 106 LI +D+G A +I E L + R AK + +V I + L+ L + D Sbjct: 65 LIGADVGFDTAIRISESLRQEVKLRNAKKPA------EVQNAIIEKLVNLYEEEGMDEVN 118 Query: 107 -FSHRPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 + +P V+L VGVNGVGKTT IGKL+ ++ G K+MLAA DTFR+ AIDQL +W Sbjct: 119 ELAIQPDGLTVMLFVGVNGVGKTTSIGKLAHQLKQEGKKIMLAAADTFRAGAIDQLVVWG 178 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 +R + V G D AA+ ++A ++A+ ++VDVL+IDTAGRL N LM + K+ R++ Sbjct: 179 ERAGVEVVRGNAGGDPAAVVFDAMRRAKEEQVDVLLIDTAGRLQNKVNLMNELEKIQRII 238 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 +R +P APH VL VLDATTGQNA+ Q + F TGL+++K+DGTA+GG ++ I Sbjct: 239 QREEPTAPHEVLLVLDATTGQNAMVQAKQFKETTNVTGLVLSKLDGTAKGGIVLAIRNEL 298 Query: 283 KIPVYFLGVGEGINDLEPFVAKDF 306 +PV +G+GEGI+DLEPF +F Sbjct: 299 HLPVKLVGLGEGIDDLEPFNPNEF 322 >gi|227499525|ref|ZP_03929632.1| Sec family type I general secretory pathway protein signal recognition particle protein FtsY [Anaerococcus tetradius ATCC 35098] gi|227218404|gb|EEI83655.1| Sec family type I general secretory pathway protein signal recognition particle protein FtsY [Anaerococcus tetradius ATCC 35098] Length = 395 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 130/302 (43%), Positives = 190/302 (62%), Gaps = 13/302 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEEL- 70 + KL G + T + + ++ + ++DD + +ELE++LI +DIG+ +IV+EL Sbjct: 94 FFAKLKDGLSKTRDQFTSNLKNLFTRNVKIDDDLYDELEEILISADIGMTSTVEIVDELR 153 Query: 71 --LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPH---VILVVGVNGVGK 124 + KR KDV + +Y V E++ + L K + D + + VILV+GVNGVGK Sbjct: 154 EEIKKRSIKDVDL---IYPVLKEIMTRKLDE--KNLDNDLKLKDNELSVILVIGVNGVGK 208 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+ + G KVMLAA DTFR+AAI+QL WA+R + + + + GSD +A+ ++ Sbjct: 209 TTTIGKLANNLKKEGKKVMLAAADTFRAAAIEQLGEWAERANIEMISHQEGSDPSAVIFD 268 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A K A+AK VDVLI DTAGRLHN LM + K+ + + A L LDATTGQN Sbjct: 269 AIKSAKAKNVDVLICDTAGRLHNKKNLMKELEKINKTIATHANKANRDNLLALDATTGQN 328 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ Q+ F V +GLI+TK+DGTA+GG + P+ V ++PV ++GVGEGI+DLE F ++ Sbjct: 329 AVSQLREFKNVTDISGLILTKLDGTAKGGVIFPLQVELEVPVKYIGVGEGIDDLEKFNSE 388 Query: 305 DF 306 F Sbjct: 389 LF 390 >gi|291563453|emb|CBL42269.1| signal recognition particle-docking protein FtsY [butyrate-producing bacterium SS3/4] Length = 311 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 125/296 (42%), Positives = 178/296 (60%), Gaps = 4/296 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L +G T + G+ I S +DD EELE+ LI D+G+ ++E+L Sbjct: 8 FFSRLVEGLTKTRENIVSGMDSIFSGFSAIDDDFYEELEETLIMGDMGIQTTMAVIEDL- 66 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGK 130 K+ K+ ++ LI + + N ++F HR V+LV+GVNGVGKTT IGK Sbjct: 67 -KKNVKEQHIKDPEQCREALIASIRSKMDLGENAYEFEHRKSVVLVIGVNGVGKTTSIGK 125 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ ++ G KV+LAA DTFR+AAIDQL WA+R + + + GSD AA+ Y+A A+ Sbjct: 126 LADQLKAEGKKVVLAAADTFRAAAIDQLAEWANRAGVELIAQKEGSDPAAVIYDAISAAK 185 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 ++ DVLI DTAGRLHN LM + K+ R++ + P A L VLD TTGQNAL Q Sbjct: 186 SRNADVLICDTAGRLHNKKNLMEELKKINRIIDKEYPEAYRETLVVLDGTTGQNALVQAR 245 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F A TG+++TK+DGTA+GG + I IPV ++GVGE I+DL+ F ++DF Sbjct: 246 QFMEAADITGIVLTKLDGTAKGGIAVAIQSELGIPVKYVGVGEKIDDLQKFNSEDF 301 >gi|154686011|ref|YP_001421172.1| hypothetical protein RBAM_015780 [Bacillus amyloliquefaciens FZB42] gi|154351862|gb|ABS73941.1| FtsY [Bacillus amyloliquefaciens FZB42] Length = 329 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 125/310 (40%), Positives = 188/310 (60%), Gaps = 10/310 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K+ ++ S K G T + +++S R++D+ EELE++LI +D+G Sbjct: 9 EKITKQTDSVSEKFKDGLEKTRNSFSNKVNELVSRYRKVDEDFFEELEEVLIGADVGFTT 68 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH------RPHVILV 116 ++++EL K+ K ++Q +V +I + L+ + + S R +VIL+ Sbjct: 69 VMELIDEL--KKEVKLKNIQDP-QEVQSVISEKLVDIYNSGDEQISELNIQDERLNVILL 125 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGKL+ K+ + G V+LAAGDTFR+ AI+QL++W +RT + GS Sbjct: 126 VGVNGVGKTTTIGKLAHKLKNEGKSVVLAAGDTFRAGAIEQLEVWGERTGVPVIKQAAGS 185 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D AA+ Y+A A+A+ DVLI DTAGRL N LM + K+ RV++R P APH VL Sbjct: 186 DPAAVIYDAVHAAKARGADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPEAPHEVLLA 245 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDATTGQNA+ Q + F TG+ +TK+DGTA+GG ++ I IPV +G+GE ++ Sbjct: 246 LDATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELHIPVKLVGLGEKVD 305 Query: 297 DLEPFVAKDF 306 DL+ F A+ + Sbjct: 306 DLQRFDAESY 315 >gi|258648342|ref|ZP_05735811.1| signal recognition particle-docking protein FtsY [Prevotella tannerae ATCC 51259] gi|260851507|gb|EEX71376.1| signal recognition particle-docking protein FtsY [Prevotella tannerae ATCC 51259] Length = 321 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 113/272 (41%), Positives = 165/272 (60%), Gaps = 8/272 (2%) Query: 53 LIRSDIGVA----VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF 107 LI SD+GV + ++I + + +Y + ++L D VS L+ + + F Sbjct: 53 LISSDVGVETTVDIIRRIEDRVARDKYVTTSELNKLLRDEVSSLLTESGNNEDEGFIIPE 112 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 + RP+VILVVGVNGVGKTT IGKL+ G +V L A DTFR+AA++QL IW +R Sbjct: 113 NGRPYVILVVGVNGVGKTTTIGKLAYHFKQEGKRVYLGAADTFRAAAVEQLCIWGERIGV 172 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + ++GSD A++AY+ A+A DV++IDTAGRLHN LM + K+ +V++++ P Sbjct: 173 PVIKQQMGSDPASVAYDTLSSAKANNADVVLIDTAGRLHNKVNLMNELTKIKKVIQKVIP 232 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 AP VL VLD +TGQNA Q + F T L +TK+DGTA+GG ++ I K+PV Sbjct: 233 EAPDEVLLVLDGSTGQNAFEQAKQFIKATDVTSLAITKLDGTAKGGVVLGISHQLKVPVR 292 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLDYGEE 319 ++G+GE + DL+PF DF + D GE+ Sbjct: 293 YIGLGERMQDLQPFNKTDF---VESLFDTGEK 321 >gi|167758290|ref|ZP_02430417.1| hypothetical protein CLOSCI_00628 [Clostridium scindens ATCC 35704] gi|167664187|gb|EDS08317.1| hypothetical protein CLOSCI_00628 [Clostridium scindens ATCC 35704] Length = 314 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 134/302 (44%), Positives = 185/302 (61%), Gaps = 8/302 (2%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67 ES+ + ++L G T + GI I S +DD EELE++LI D+GV I+ Sbjct: 7 ESMGFFKRLVSGLGKTRDNIVSGIDSIFSGFSHIDDDFYEELEEVLIMGDLGVTATYDIL 66 Query: 68 EELLTK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 E+L K ++ K+ S R L + + +M + + ++F + V++V+GVNGVGK Sbjct: 67 EDLKAKVKEQHIKEPSQCRQLL-IDSIKEQMDVGETA---YEFEDQTSVVMVIGVNGVGK 122 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+ K+ KV+LAA DTFR+AA +QLK WA+R AD + + GSD A++ Y+ Sbjct: 123 TTTIGKLAGKLRAQNKKVVLAAADTFRAAAGEQLKEWANRAQADLIGGQEGSDPASVVYD 182 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A A+A+ DVL+ DTAGRLHN LM + KM R++ R P A L VLDATTGQN Sbjct: 183 AVAAAKARHADVLLCDTAGRLHNKKNLMEELKKMNRIIDREYPEAFRETLVVLDATTGQN 242 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 AL+Q F+ VA TG+I+TKMDGTA+GG + I IPV ++GVGE I DL+ F A Sbjct: 243 ALQQAREFNEVADITGIILTKMDGTAKGGIAVAIQAELGIPVKYIGVGETIEDLQKFDAD 302 Query: 305 DF 306 F Sbjct: 303 TF 304 >gi|254414380|ref|ZP_05028147.1| signal recognition particle-docking protein FtsY, putative [Microcoleus chthonoplastes PCC 7420] gi|196179055|gb|EDX74052.1| signal recognition particle-docking protein FtsY, putative [Microcoleus chthonoplastes PCC 7420] Length = 584 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 109/315 (34%), Positives = 187/315 (59%), Gaps = 6/315 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + V++E +SW+++L G T L + I+ L+ E+E LL+++D+G+ Sbjct: 270 EDVSAEEISWLKQLRSGLGKTRRGLVNQLKSIVGQGPLNQDAVMEIEALLLQADVGIEAT 329 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVVGV 119 I+E L + + + ++ + + +++ +L P + + F ++ L+ GV Sbjct: 330 DYIIETLQARMRQEVLPPEQAIAYLKQILRDLLDKPCRESYGSTFFPEKDTLNIWLMTGV 389 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178 NG GKTT IGKL+ + + K ++ A DTFR+AA++Q+KIW +R+S + + + +D Sbjct: 390 NGAGKTTTIGKLAHLANKSDYKCLIGAADTFRAAAVEQVKIWGERSSTEVIANPGKNTDP 449 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ +++ AQA+ ++L++DTAGRL N LM + K+ R++ + P A L VLD Sbjct: 450 AAVVFDSITAAQARNTELLLVDTAGRLQNKKNLMEELAKIRRIIDKKAPEAKVESLLVLD 509 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 AT GQN LRQ E+F A +G+++TK+DGTA+GG + IV +P+ F+G GEGI DL Sbjct: 510 ATLGQNGLRQAEVFSEAAKLSGVVLTKLDGTAKGGVALAIVQQLGLPIRFVGAGEGIEDL 569 Query: 299 EPFVAKDF-SAVITG 312 PF + +F A+++G Sbjct: 570 RPFSSYEFVEALLSG 584 >gi|227544365|ref|ZP_03974414.1| signal recognition particle-docking protein FtsY [Lactobacillus reuteri CF48-3A] gi|300909774|ref|ZP_07127235.1| cell division protein FtsY [Lactobacillus reuteri SD2112] gi|227185628|gb|EEI65699.1| signal recognition particle-docking protein FtsY [Lactobacillus reuteri CF48-3A] gi|300893639|gb|EFK86998.1| cell division protein FtsY [Lactobacillus reuteri SD2112] Length = 507 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 114/262 (43%), Positives = 159/262 (60%), Gaps = 10/262 (3%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL----SKPFNWDF 107 +LI SD+G +A K+ +EL R + + DVS +I + ++ L + N D Sbjct: 237 MLIESDVGYDMAMKLSDEL---REEVKLQNAKSKQDVSNVIIEKMVELYDEAGQDENPDL 293 Query: 108 S---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 + P VI+ VGVNG GKTT IGK++ G KV+LAA DTFR+ A +QL +WA R Sbjct: 294 TMTKEGPTVIMFVGVNGAGKTTTIGKMAALFKKQGKKVLLAAADTFRAGATEQLDVWAKR 353 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 D V D AA+ ++A K+A+ + D+L +DTAGRL N LM + KM R+L R Sbjct: 354 DGVDIVTGPENGDPAAVVFDAVKRAKDENYDILFVDTAGRLQNKVNLMNELAKMKRILTR 413 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P APH VL VLDATTGQNAL Q ++F TG+++TK+DGTARGG ++ I + Sbjct: 414 EIPDAPHEVLLVLDATTGQNALNQAKLFKESTDVTGIVLTKLDGTARGGIVLAIRNELHL 473 Query: 285 PVYFLGVGEGINDLEPFVAKDF 306 PV ++G+GE ++DL+ F A DF Sbjct: 474 PVKYVGLGEKVDDLQKFDAGDF 495 >gi|324993860|gb|EGC25779.1| cell division protein FtsY [Streptococcus sanguinis SK405] gi|324994819|gb|EGC26732.1| cell division protein FtsY [Streptococcus sanguinis SK678] gi|325687260|gb|EGD29282.1| cell division protein FtsY [Streptococcus sanguinis SK72] gi|327463124|gb|EGF09445.1| cell division protein FtsY [Streptococcus sanguinis SK1] Length = 504 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 115/258 (44%), Positives = 159/258 (61%), Gaps = 8/258 (3%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108 I SD+GV VA + EEL RY + + + +LI + L+ + + FN +F Sbjct: 241 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 297 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + V+L VGVNGVGKTT IGKL+ K G KVML A DTFR+ A+ QL W R Sbjct: 298 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 357 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V SD A++ Y+ ++AQA++VDVL+IDTAGRL N LMA + K+ R++KR+DP Sbjct: 358 VVTGPEKSDPASVVYDGMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 417 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 APH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV Sbjct: 418 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 477 Query: 289 LGVGEGINDLEPFVAKDF 306 +G GE I+D+ F +++F Sbjct: 478 IGFGEKIDDIGEFNSENF 495 >gi|226356328|ref|YP_002786068.1| cell division protein FtsY, signal recognition particle-docking protein FtsY [Deinococcus deserti VCD115] gi|226318318|gb|ACO46314.1| putative Cell division protein ftsY, Signal recognition particle-docking protein FtsY [Deinococcus deserti VCD115] Length = 318 Score = 205 bits (522), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 126/315 (40%), Positives = 182/315 (57%), Gaps = 28/315 (8%) Query: 11 LSWIRKLTKGFASTSLKLKE-------GITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 +SW+ +L G + T ++ E + D+ ++R L+ E+LE LI +D+G A Sbjct: 1 MSWLERLRDGLSKTRKQINETAGFLGNDVRDVFTNR-LE--TIEDLEYALIAADVGRAAT 57 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK-------PFNWDFSH-----RP 111 ++I+E++ R ++ ++Q+ L D L L P ++ F D S + Sbjct: 58 EEILEDV---RSSEGKNLQQALMDALVL---QLEPDARRAEFRKLGFAPDVSRSRIDPKG 111 Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 HV++V+GVNGVGKTT I KL + G VM AAGDTFR+AA QL +W DR V Sbjct: 112 HVVMVIGVNGVGKTTTIAKLGQYYMTRGKSVMFAAGDTFRAAAGAQLGVWGDRLGIPVVQ 171 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 G D AA+A++ A+ D+L +DTAGRLHN LM + K+ RV+ + DP P Sbjct: 172 GIDGGDPAAVAFDGASARAARGTDLLFVDTAGRLHNKHNLMEELKKVRRVIDKADPGEPA 231 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 V VLDA TGQN L+Q + FH TG+I+TK+DGTA+GG LIPIV +P+ F+GV Sbjct: 232 EVWLVLDAVTGQNGLQQAKKFHEATPLTGVIVTKLDGTAKGGILIPIVRELGVPIKFIGV 291 Query: 292 GEGINDLEPFVAKDF 306 GE DL+PF +++F Sbjct: 292 GEQAGDLQPFDSQEF 306 >gi|332367150|gb|EGJ44886.1| cell division protein FtsY [Streptococcus sanguinis SK1059] Length = 506 Score = 205 bits (522), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 115/258 (44%), Positives = 159/258 (61%), Gaps = 8/258 (3%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108 I SD+GV VA + EEL RY + + + +LI + L+ + + FN +F Sbjct: 243 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 299 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + V+L VGVNGVGKTT IGKL+ K G KVML A DTFR+ A+ QL W R Sbjct: 300 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 359 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V SD A++ Y+ ++AQA++VDVL+IDTAGRL N LMA + K+ R++KR+DP Sbjct: 360 VVTGPEKSDPASVVYDGMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 419 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 APH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV Sbjct: 420 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 479 Query: 289 LGVGEGINDLEPFVAKDF 306 +G GE I+D+ F +++F Sbjct: 480 IGFGEKIDDIGEFNSENF 497 >gi|224369892|ref|YP_002604056.1| Srp [Desulfobacterium autotrophicum HRM2] gi|223692609|gb|ACN15892.1| Srp [Desulfobacterium autotrophicum HRM2] Length = 320 Score = 205 bits (522), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 126/294 (42%), Positives = 189/294 (64%), Gaps = 6/294 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 + +G + T L I D+ S +R +DD + EE+E+ LI +D+GV + K++E + R Sbjct: 24 RFKQGLSRTRDILFTDIDDLFSKKRVIDDTLLEEIEESLIMADLGVDLCLKVMENV--SR 81 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH--RPHVILVVGVNGVGKTTVIGKLS 132 +K +S L D+ + + L P +P + + +P VI+VVGVNG GKTT +GKL+ Sbjct: 82 KSKKLSTANELKDLLKAEIQALFP-GEPSAPEPTAVVKPRVIMVVGVNGTGKTTTLGKLA 140 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 K ++ G KV++AA DTFR+AAI+Q+ WA R + V G+D AA+A++ + A A+ Sbjct: 141 MKFTNEGQKVLIAAADTFRAAAIEQVSEWARRANVGIVKHRDGADPAAVAFDGVEAAIAR 200 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 +DVL+IDTAGRLH LM + K+ R + + P APH VL VLDATTGQNA+ Q ++F Sbjct: 201 GIDVLLIDTAGRLHTQKNLMEELKKIKRTIAKRLPGAPHEVLMVLDATTGQNAISQAKLF 260 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + G T L +TK+DGTA+GG + I T +IP+ ++G+GEGINDL+ F ++ F Sbjct: 261 NEAVGVTALALTKLDGTAKGGIAVSISGTMEIPLKYIGLGEGINDLQEFNSQLF 314 >gi|261749202|ref|YP_003256887.1| signal recognition particle-docking protein FtsY [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497294|gb|ACX83744.1| signal recognition particle-docking protein FtsY [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 320 Score = 205 bits (522), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 109/281 (38%), Positives = 171/281 (60%), Gaps = 22/281 (7%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99 +LD + +E++L+ SDIG KI+ L K +Q+ Y E I K+ L Sbjct: 37 KLDTDFIDHIEEILLSSDIGTETTIKIINNLEKK-------IQKEKYRGGE-IQKLYKLL 88 Query: 100 SKPFNWDFSH--------------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 + + F + +P+VI++VGVNGVGKTT IGKL+ + G +++ Sbjct: 89 KEEIEFLFKNIKNECLEQKIKEERKPYVIMMVGVNGVGKTTTIGKLAFFLKKKGFNLIIG 148 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 A DTFR AAI+QL+IW++ + + + +D A++AY+ + AQ++KVDV++IDTAGRL Sbjct: 149 AADTFREAAINQLEIWSNTVNVPLIKQHMYADPASVAYDTLQSAQSRKVDVVLIDTAGRL 208 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 N LM + K+ RV+K++ APH ++ VLDA+TGQNA QV+ F + + +I+TK Sbjct: 209 QNRIGLMEELAKISRVMKKVISKAPHEIMLVLDASTGQNAFEQVKKFISFVKVSSIILTK 268 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++GTA+GG +I I+ ++P+ ++GVGE I DL+ F K F Sbjct: 269 LEGTAKGGVVIGIMDQFQVPIQYIGVGEKIQDLKEFNGKKF 309 >gi|327490292|gb|EGF22080.1| cell division protein FtsY [Streptococcus sanguinis SK1058] Length = 498 Score = 205 bits (522), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 115/258 (44%), Positives = 159/258 (61%), Gaps = 8/258 (3%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108 I SD+GV VA + EEL RY + + + +LI + L+ + + FN +F Sbjct: 235 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 291 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + V+L VGVNGVGKTT IGKL+ K G KVML A DTFR+ A+ QL W R Sbjct: 292 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 351 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V SD A++ Y+ ++AQA++VDVL+IDTAGRL N LMA + K+ R++KR+DP Sbjct: 352 VVTGPEKSDPASVVYDGMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 411 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 APH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV Sbjct: 412 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 471 Query: 289 LGVGEGINDLEPFVAKDF 306 +G GE I+D+ F +++F Sbjct: 472 IGFGEKIDDIGEFNSENF 489 >gi|311745775|ref|ZP_07719560.1| signal recognition particle-docking protein FtsY [Algoriphagus sp. PR1] gi|126575974|gb|EAZ80252.1| signal recognition particle-docking protein FtsY [Algoriphagus sp. PR1] Length = 318 Score = 205 bits (522), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 116/261 (44%), Positives = 160/261 (61%), Gaps = 7/261 (2%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELIHKMLMPLSKPFNWDFS- 108 +LI SD+GV K++ + +R A+D V D + E I +L + DF Sbjct: 51 ILITSDVGVDTTIKVINRI-EERVARDKYVNTEELDKILKEEISGLLEENNTQDLLDFDI 109 Query: 109 ---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 +P+VI+VVGVNGVGKTT IGKL+ AG V+L A DTFR+AA+DQL +W DR Sbjct: 110 PEGKKPYVIMVVGVNGVGKTTTIGKLANLFKSAGKNVILGAADTFRAAAVDQLILWGDRV 169 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + +D A++A++A KQ + DV+IIDTAGRLH LM +GK+ RV+++ Sbjct: 170 GVPVISHGMNTDPASVAFDAVKQGVDTQADVVIIDTAGRLHTKVNLMNELGKIKRVMQKF 229 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P APH +L VLD +TGQNA Q + F V T L +TK+DGTA+GG +I I KIP Sbjct: 230 IPDAPHEILLVLDGSTGQNAFIQAKEFTKVTEITSLAITKLDGTAKGGVVIGISDQFKIP 289 Query: 286 VYFLGVGEGINDLEPFVAKDF 306 V ++GVGE + DL+ F K+F Sbjct: 290 VKYIGVGEKMTDLQLFNRKEF 310 >gi|332528924|ref|ZP_08404891.1| signal recognition particle-docking protein FtsY [Hylemonella gracilis ATCC 19624] gi|332041585|gb|EGI77944.1| signal recognition particle-docking protein FtsY [Hylemonella gracilis ATCC 19624] Length = 332 Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 128/309 (41%), Positives = 193/309 (62%), Gaps = 19/309 (6%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-- 70 W+ KL G T GI + + R+DD + E+LE+ L+ +D GV Q ++++L Sbjct: 30 WLGKLRAGLRKTG----SGIATVFTGTRIDDALYEQLEEALLMADAGVKATQYLLDDLKH 85 Query: 71 -LTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + + A D +V+ +L D + ++L PL + N +H+P VI+V GVNG GKTT I Sbjct: 86 RVKESKATDPAAVKALLVDA---LTELLAPLEQTLNVG-AHKPTVIMVAGVNGAGKTTSI 141 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR----TSADFVCSEIGSDAAALAYE 184 GKL+ +++AG V+LAA DTFR+AA +QL +WADR T + + + G D A++ ++ Sbjct: 142 GKLTHHLAEAGASVLLAAADTFRAAAREQLMVWADRNRQGTGSVDIVHQAGGDPASVCFD 201 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A +A+ DV+++DTAGRL LM I K+ RV+++ D APH VL V+D TGQN Sbjct: 202 AVSAGKARGKDVVLVDTAGRLPTQLHLMEEIKKIKRVVQKADETAPHEVLLVIDGNTGQN 261 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK---IPVYFLGVGEGINDLEPF 301 AL QV+ F G TGLI+TK+DGTA+GG L I + + +PVYF+GVGE +++LE F Sbjct: 262 ALTQVKAFDEALGLTGLIVTKLDGTAKGGVLAAIALLSRERPLPVYFIGVGEQLDELETF 321 Query: 302 VAKDFSAVI 310 A++F+ + Sbjct: 322 EAREFAQAL 330 >gi|288905739|ref|YP_003430961.1| signal recognition particle (SRP)-docking protein [Streptococcus gallolyticus UCN34] gi|325978771|ref|YP_004288487.1| signal recognition particle-docking protein FtsY [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732465|emb|CBI14037.1| Putative signal recognition particle (SRP)-docking protein [Streptococcus gallolyticus UCN34] gi|325178699|emb|CBZ48743.1| signal recognition particle-docking protein FtsY [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 476 Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 127/304 (41%), Positives = 182/304 (59%), Gaps = 11/304 (3%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 +E + R L K S +L + + RR+D+ EELE++LI SD+GV VA ++ Sbjct: 170 TEEEKYNRSLKKTRTGFSARLNAFLANF---RRVDEEFFEELEEMLILSDVGVNVATQLT 226 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFSHRPHVILVVGVNGV 122 E+L RY + + D+ +I + L+ + + FN +F V+L VGVNGV Sbjct: 227 EDL---RYEAKLENAKRADDLKRVIIEKLVDIYEKDGVFNEKINFQDDLTVMLFVGVNGV 283 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+ K + G KVML A DTFR+ A+ QL W R V +D A++ Sbjct: 284 GKTTSIGKLAYKYKNEGKKVMLVAADTFRAGAVAQLVEWGRRVGVPVVTGPEKADPASVV 343 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++ ++A A+ VD+L+IDTAGRL N LMA + K+ R++KR+ P APH L LDA+TG Sbjct: 344 FDGMEKAVAENVDILLIDTAGRLQNKDNLMAELEKIGRIIKRVVPDAPHETLLALDASTG 403 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV F+G GE I+D+ F Sbjct: 404 QNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIGEFD 463 Query: 303 AKDF 306 ++DF Sbjct: 464 SEDF 467 >gi|260891156|ref|ZP_05902419.1| signal recognition particle-docking protein FtsY [Leptotrichia hofstadii F0254] gi|260859183|gb|EEX73683.1| signal recognition particle-docking protein FtsY [Leptotrichia hofstadii F0254] Length = 281 Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 113/263 (42%), Positives = 162/263 (61%), Gaps = 17/263 (6%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSHR 110 I+SDIG+ + ++VEEL + SV R SE I+ L L K +N + S + Sbjct: 20 IQSDIGMNMTMQLVEEL-------EKSVSRKKLKTSEQIYDELKELLKAKLIYNDESSTK 72 Query: 111 P-------HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 +++LVVGVNGVGKTT IGK++KK+ D+G KV++ AGDTFR+AAI+Q++ W Sbjct: 73 LKLQDGKLNILLVVGVNGVGKTTSIGKIAKKLKDSGKKVIIGAGDTFRAAAIEQVEEWGK 132 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 RT + + GSD AA+ ++ K A+ + DV I+DTAGRLHN LM + K+ ++++ Sbjct: 133 RTGVEVIKQAHGSDPAAVIFDTVKTAKNRGFDVAILDTAGRLHNKRDLMKELEKINKIIR 192 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 L V+D+TTGQN L Q +F+ + TG+I+TK DGTA+GG + PI K Sbjct: 193 EQSGETDFETLLVIDSTTGQNGLEQARIFNEIVDLTGIILTKFDGTAKGGIIFPITEELK 252 Query: 284 IPVYFLGVGEGINDLEPFVAKDF 306 P+ F+GVGEGI DL F K+F Sbjct: 253 KPIKFIGVGEGIEDLREFDTKEF 275 >gi|148544381|ref|YP_001271751.1| signal recognition particle-docking protein FtsY [Lactobacillus reuteri DSM 20016] gi|184153745|ref|YP_001842086.1| signal recognition particle receptor [Lactobacillus reuteri JCM 1112] gi|227363194|ref|ZP_03847328.1| signal recognition particle-docking protein FtsY [Lactobacillus reuteri MM2-3] gi|325682701|ref|ZP_08162217.1| cell division protein FtsY [Lactobacillus reuteri MM4-1A] gi|148531415|gb|ABQ83414.1| signal recognition particle-docking protein FtsY [Lactobacillus reuteri DSM 20016] gi|183225089|dbj|BAG25606.1| signal recognition particle receptor [Lactobacillus reuteri JCM 1112] gi|227071800|gb|EEI10089.1| signal recognition particle-docking protein FtsY [Lactobacillus reuteri MM2-3] gi|324977051|gb|EGC14002.1| cell division protein FtsY [Lactobacillus reuteri MM4-1A] Length = 508 Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 114/262 (43%), Positives = 159/262 (60%), Gaps = 10/262 (3%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL----SKPFNWDF 107 +LI SD+G +A K+ +EL R + + DVS +I + ++ L + N D Sbjct: 238 MLIESDVGYDMAMKLSDEL---REEVKLQNAKSKQDVSNVIIEKMVELYDEAGQDENPDL 294 Query: 108 S---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 + P VI+ VGVNG GKTT IGK++ G KV+LAA DTFR+ A +QL +WA R Sbjct: 295 TMAKEGPTVIMFVGVNGAGKTTTIGKMAALFKKQGKKVLLAAADTFRAGATEQLDVWAKR 354 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 D V D AA+ ++A K+A+ + D+L +DTAGRL N LM + KM R+L R Sbjct: 355 DGVDIVTGPENGDPAAVVFDAVKRAKDENYDILFVDTAGRLQNKVNLMNELAKMKRILTR 414 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P APH VL VLDATTGQNAL Q ++F TG+++TK+DGTARGG ++ I + Sbjct: 415 EIPDAPHEVLLVLDATTGQNALNQAKLFKESTDVTGIVLTKLDGTARGGIVLAIRNELHL 474 Query: 285 PVYFLGVGEGINDLEPFVAKDF 306 PV ++G+GE ++DL+ F A DF Sbjct: 475 PVKYVGLGEKVDDLQKFDAGDF 496 >gi|119356176|ref|YP_910820.1| signal recognition particle-docking protein FtsY [Chlorobium phaeobacteroides DSM 266] gi|119353525|gb|ABL64396.1| signal recognition particle-docking protein FtsY [Chlorobium phaeobacteroides DSM 266] Length = 316 Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 126/306 (41%), Positives = 188/306 (61%), Gaps = 8/306 (2%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L +G + TS +E ++ I + +D+ EELE +L+ +D+GV IV+ + T Sbjct: 9 LSRLKEGLSKTSETFREKLSLITQGKTEIDEEFLEELEHILVGADVGVETTLSIVDAI-T 67 Query: 73 KRYAKDV--SVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVNGVGKTT 126 +R ++ S + + + E I +ML+ + + DF S +P+VILVVGVNG GKTT Sbjct: 68 ERAKRESYRSAEELNRMLMEEIQQMLLDSGEHYPIDFDAPLSAKPYVILVVGVNGAGKTT 127 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 + KL+ AG KV++AA DTFR+AA +QLKIWADR + G+D A++ Y+A Sbjct: 128 SVAKLAYNYEKAGKKVIIAAADTFRAAAYEQLKIWADRAGVPLIGQGQGADPASVVYDAV 187 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A ++ DV+++DTAGRLHN S LM + K++RV K+ P APH VL VLD TTGQNA+ Sbjct: 188 SSAVSRNSDVVLVDTAGRLHNKSHLMEELAKIMRVAKKKIPEAPHEVLLVLDGTTGQNAV 247 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q F TGL++TK+DGT++GG ++ I +PV ++GVGE I+DL+ F F Sbjct: 248 SQAREFTRFVNVTGLVLTKLDGTSKGGIVLSISRELNLPVKYIGVGEKIDDLQLFDRARF 307 Query: 307 SAVITG 312 + G Sbjct: 308 VEALLG 313 >gi|332358946|gb|EGJ36767.1| cell division protein FtsY [Streptococcus sanguinis SK49] Length = 512 Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 115/258 (44%), Positives = 159/258 (61%), Gaps = 8/258 (3%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108 I SD+GV VA + EEL RY + + + +LI + L+ + + FN +F Sbjct: 249 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 305 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + V+L VGVNGVGKTT IGKL+ K G KVML A DTFR+ A+ QL W R Sbjct: 306 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 365 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V SD A++ Y+ ++AQA++VDVL+IDTAGRL N LMA + K+ R++KR+DP Sbjct: 366 VVTGPEKSDPASVVYDGMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 425 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 APH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV Sbjct: 426 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 485 Query: 289 LGVGEGINDLEPFVAKDF 306 +G GE I+D+ F +++F Sbjct: 486 IGFGEKIDDIGEFNSENF 503 >gi|218961112|ref|YP_001740887.1| Cell division protein FtsY [Candidatus Cloacamonas acidaminovorans] gi|167729769|emb|CAO80681.1| Cell division protein FtsY [Candidatus Cloacamonas acidaminovorans] Length = 324 Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 118/301 (39%), Positives = 177/301 (58%), Gaps = 5/301 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIV-- 67 L+ ++ L + A T+ IT+ + R++ D+ + E+E++L+ D G+ + I+ Sbjct: 17 LNIVKNLKEKLAKTNSNFMGKITETVKKRKVVDEEMLAEIEEILLSCDTGIEMTDIILTR 76 Query: 68 -EELLTKRYAKDVSVQRV-LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 +E L K D + ++ L DV I + F + +P+V++ VGVNG GKT Sbjct: 77 FKEQLKKDKVTDPEIAQIYLTDVMRDILLAENEETPDFFAEPQAKPYVVVFVGVNGTGKT 136 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGK++ K + G KV++ AGDTFR+AAI+Q+ IWA+R V S+ SD AA+ Y+ Sbjct: 137 TTIGKVAYKFNQMGKKVLIVAGDTFRAAAIEQIAIWAERAGVPIVRSQPDSDPAAIIYDG 196 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A A+ DV++IDTAGR H LM + K+ R +++L P APH V+ V+DATTGQNA Sbjct: 197 VHSALARGYDVVLIDTAGRQHTKDNLMKELTKIERTIQKLIPDAPHEVILVVDATTGQNA 256 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + Q F TG+ +TK DGT++GG + + ++PV LGVGEGI DL PF A Sbjct: 257 VSQAHNFDKAMKLTGIALTKYDGTSKGGIIFNLKYNLQLPVKLLGVGEGIEDLLPFKAVP 316 Query: 306 F 306 F Sbjct: 317 F 317 >gi|146296632|ref|YP_001180403.1| signal recognition particle-docking protein FtsY [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410208|gb|ABP67212.1| signal recognition particle-docking protein FtsY [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 300 Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 121/297 (40%), Positives = 186/297 (62%), Gaps = 4/297 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L +G + T E + +++ + +++DD + +ELE++L+ SD+GV +QKI+E Sbjct: 1 MGFFDRLKEGLSKTKKNFTERVENLLKAFKQVDDELFDELEEVLVLSDVGVKTSQKIIEN 60 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L K +S + V EL+ + + + N P +IL+VGVNGVGKTT IG Sbjct: 61 LKEKVKMNKISDSQA---VKELLKEEMFNIINLPNKLRERYPLIILMVGVNGVGKTTSIG 117 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 K++ + G KV++AA DTFR+AAIDQL+IWA R D + G+D AA+ ++ + Sbjct: 118 KIANLLKSNGKKVIIAAADTFRAAAIDQLEIWAKRVGCDIIKHVEGADPAAVVFDGIQAM 177 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+K DVLI+DTAGRLH L+ + K+ RV+ + P A L V+DATTGQN L Q Sbjct: 178 RARKADVLIVDTAGRLHTKKNLIEELRKIDRVINQQIPEAEKETLLVIDATTGQNGLIQA 237 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ +G+++TK+DGTA+GG ++ I KIPV F+GVGE I+DL+ F K+F Sbjct: 238 KEFNQAVNISGIVLTKLDGTAKGGIVVSICDELKIPVKFIGVGEKIDDLQEFDPKEF 294 >gi|332981633|ref|YP_004463074.1| signal recognition particle-docking protein FtsY [Mahella australiensis 50-1 BON] gi|332699311|gb|AEE96252.1| signal recognition particle-docking protein FtsY [Mahella australiensis 50-1 BON] Length = 304 Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 134/306 (43%), Positives = 187/306 (61%), Gaps = 15/306 (4%) Query: 16 KLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 KL G A T + +I SS+ +D+ ++LE+LLI +D+G A+ I+ ++ K+ Sbjct: 6 KLKSGLAKTRDNFSSRVDGLINSSKVIDEEFYDQLEELLILADVGAKAAESIINDI--KK 63 Query: 75 YAKDVSVQRVLYDVSE----LIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIG 129 K Q+ L D + L ++ LSK + D P +ILVVGVNGVGKTT IG Sbjct: 64 QVK----QQKLRDPEQVRALLKDELKRVLSKNAASKDMDLYPRIILVVGVNGVGKTTTIG 119 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ K G KV+LAA DTFR+AA +QL+IW+ R D V E GSD AA+ ++A + A Sbjct: 120 KLAYKFKQDGRKVLLAAADTFRAAATEQLEIWSQRAGVDIVKHEEGSDPAAVVFDAIQSA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +AKK DV+I DTAGRLHN LM + K+ RV++R P A VL VLDATTGQNA+ Q Sbjct: 180 KAKKADVIICDTAGRLHNKKNLMEELKKVNRVVEREYPEAYKEVLLVLDATTGQNAVSQA 239 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 +F + +TK+DGTA+GG +I I +PV ++GVGEGI+DL+ F ++F Sbjct: 240 RVFKEAVDINSIALTKLDGTAKGGVIIAIADELSVPVKYIGVGEGIDDLQDFEPQNF--- 296 Query: 310 ITGCLD 315 ++ LD Sbjct: 297 VSALLD 302 >gi|323351219|ref|ZP_08086875.1| cell division protein FtsY [Streptococcus sanguinis VMC66] gi|322122443|gb|EFX94154.1| cell division protein FtsY [Streptococcus sanguinis VMC66] Length = 506 Score = 205 bits (521), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 115/258 (44%), Positives = 159/258 (61%), Gaps = 8/258 (3%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108 I SD+GV VA + EEL RY + + + +LI + L+ + + FN +F Sbjct: 243 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 299 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + V+L VGVNGVGKTT IGKL+ K G KVML A DTFR+ A+ QL W R Sbjct: 300 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 359 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V SD A++ Y+ ++AQA++VDVL+IDTAGRL N LMA + K+ R++KR+DP Sbjct: 360 VVTGPEKSDPASVVYDGMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 419 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 APH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV Sbjct: 420 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 479 Query: 289 LGVGEGINDLEPFVAKDF 306 +G GE I+D+ F +++F Sbjct: 480 IGFGEKIDDIGEFNSENF 497 >gi|330862600|emb|CBX72753.1| cell division protein ftsY [Yersinia enterocolitica W22703] Length = 439 Score = 205 bits (521), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 113/263 (42%), Positives = 170/263 (64%), Gaps = 4/263 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 179 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 238 Query: 73 KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130 K + LY + E + ++L + KP D S + P VIL+VGVNGVGKTT IGK Sbjct: 239 HASRKQLKDAEALYGKLKEEMSEILSKVDKPL--DVSGKNPFVILMVGVNGVGKTTTIGK 296 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+++ G VMLAAGDTFR+AA++QL++W DR V G+D+A++ ++A + A+ Sbjct: 297 LARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNKIAVVAQHTGADSASVIFDAIQAAK 356 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q + Sbjct: 357 ARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAK 416 Query: 251 MFHAVAGTTGLIMTKMDGTARGG 273 +F+ G TG+ +TK+DGTA+GG Sbjct: 417 LFNEAVGLTGITLTKLDGTAKGG 439 >gi|306831836|ref|ZP_07464992.1| cell division protein FtsY [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426034|gb|EFM29150.1| cell division protein FtsY [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 488 Score = 205 bits (521), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 127/304 (41%), Positives = 182/304 (59%), Gaps = 11/304 (3%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 +E + R L K S +L + + RR+D+ EELE++LI SD+GV VA ++ Sbjct: 182 TEEEKYNRSLKKTRTGFSARLNAFLANF---RRVDEEFFEELEEMLILSDVGVNVATQLT 238 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFSHRPHVILVVGVNGV 122 E+L RY + + D+ +I + L+ + + FN +F V+L VGVNGV Sbjct: 239 EDL---RYEAKLENAKRADDLKRVIIEKLVDIYEKDGVFNEKINFQDDLTVMLFVGVNGV 295 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+ K + G KVML A DTFR+ A+ QL W R V +D A++ Sbjct: 296 GKTTSIGKLAYKYKNEGKKVMLVAADTFRAGAVAQLVEWGRRVGVPVVTGPEKADPASVV 355 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++ ++A A+ VD+L+IDTAGRL N LMA + K+ R++KR+ P APH L LDA+TG Sbjct: 356 FDGMEKAVAENVDILLIDTAGRLQNKDNLMAELEKIGRIIKRVVPDAPHETLLALDASTG 415 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV F+G GE I+D+ F Sbjct: 416 QNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIGEFD 475 Query: 303 AKDF 306 ++DF Sbjct: 476 SEDF 479 >gi|160897244|ref|YP_001562826.1| signal recognition particle-docking protein FtsY [Delftia acidovorans SPH-1] gi|160362828|gb|ABX34441.1| signal recognition particle-docking protein FtsY [Delftia acidovorans SPH-1] Length = 406 Score = 205 bits (521), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 126/300 (42%), Positives = 185/300 (61%), Gaps = 7/300 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 +W+++L G T I + + +++D + EELED L+ +D GV + ++ +L Sbjct: 111 NWMQRLKTGLRKTG----SSIATVFTGTQINDALYEELEDALLMADTGVKATEHLLADLR 166 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + + AK V +++ + +L PL KP H+P VI+V GVNG GKTT IGK Sbjct: 167 RRVKEAKATDPAAVKALLADALADLLRPLEKPLVIG-EHQPTVIMVAGVNGAGKTTSIGK 225 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L++ ++D G V+LAA DTFR+AA +QL +WA+R + + V E G D AA++++A + Sbjct: 226 LTRHLADEGQSVLLAAADTFRAAAREQLGVWANRNTVEIVSQE-GGDPAAVSFDAVTAGR 284 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+K DV+++DTAGRL LM + K+ RV+ + D APH VL V+D TGQNAL QV Sbjct: 285 ARKKDVVLVDTAGRLPTQLHLMEELRKIRRVVSKADATAPHEVLLVIDGNTGQNALAQVR 344 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F TGLI+TK+DGTA+GG L I IPVYF+GVGE + DLE F A++F+ + Sbjct: 345 AFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPIPVYFIGVGEKVEDLETFNAREFAQAL 404 >gi|306833958|ref|ZP_07467082.1| cell division protein FtsY [Streptococcus bovis ATCC 700338] gi|304423959|gb|EFM27101.1| cell division protein FtsY [Streptococcus bovis ATCC 700338] Length = 485 Score = 205 bits (521), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 127/304 (41%), Positives = 182/304 (59%), Gaps = 11/304 (3%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 +E + R L K S +L + + RR+D+ EELE++LI SD+GV VA ++ Sbjct: 179 TEEEKYNRSLKKTRTGFSARLNAFLANF---RRVDEEFFEELEEMLILSDVGVNVATQLT 235 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFSHRPHVILVVGVNGV 122 E+L RY + + D+ +I + L+ + + FN +F V+L VGVNGV Sbjct: 236 EDL---RYEAKLENAKRADDLKRVIIEKLVDIYEKDGVFNEKINFQDDLTVMLFVGVNGV 292 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+ K + G KVML A DTFR+ A+ QL W R V +D A++ Sbjct: 293 GKTTSIGKLAYKYKNEGKKVMLVAADTFRAGAVAQLVEWGRRVGVPVVTGPEKADPASVV 352 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++ ++A A+ VD+L+IDTAGRL N LMA + K+ R++KR+ P APH L LDA+TG Sbjct: 353 FDGMEKAVAENVDILLIDTAGRLQNKDNLMAELEKIGRIIKRVVPDAPHETLLALDASTG 412 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV F+G GE I+D+ F Sbjct: 413 QNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIGKFD 472 Query: 303 AKDF 306 ++DF Sbjct: 473 SEDF 476 >gi|224541340|ref|ZP_03681879.1| hypothetical protein CATMIT_00500 [Catenibacterium mitsuokai DSM 15897] gi|224525777|gb|EEF94882.1| hypothetical protein CATMIT_00500 [Catenibacterium mitsuokai DSM 15897] Length = 326 Score = 205 bits (521), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 120/288 (41%), Positives = 175/288 (60%), Gaps = 14/288 (4%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM- 97 R ++D +ELE++LI SD+GV + KIV+E+ + +++ + D+ ++ KM + Sbjct: 45 REINDEYFDELENILIMSDVGVNMVMKIVDEIKKEVRLENIKDPHAINDI--IVDKMFVI 102 Query: 98 -----PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFR 151 ++ N+ + VIL+VGVNG GKTT I KL+ K M + G KVM+AAGDTFR Sbjct: 103 YANDSYMTTKINY-AENDLTVILMVGVNGAGKTTTIAKLANKIMHEEGKKVMVAAGDTFR 161 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 + AI+QL WA+R + V + G D +++ ++A +QA+ DVLI DTAGRL N L Sbjct: 162 AGAIEQLAEWANRLNIPCVKGKEGGDPSSVIFDALEQAKEGGYDVLICDTAGRLQNKVNL 221 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M + KM R++KR+ P P L V+DATTGQN + Q F + TG+++TKMDGTA+ Sbjct: 222 MKELEKMNRIIKRVVPEGPQETLLVVDATTGQNGISQAVEFSKITDITGIVLTKMDGTAK 281 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG-CLDYGE 318 GG ++ I IPV F+G+GE I+DL+ F D I G C D E Sbjct: 282 GGIILSIKDMLNIPVKFIGLGEKIDDLQEF---DLEQYIYGLCNDLME 326 >gi|227484995|ref|ZP_03915311.1| Sec family type I general secretory pathway protein signal recognition particle protein FtsY [Anaerococcus lactolyticus ATCC 51172] gi|227236992|gb|EEI87007.1| Sec family type I general secretory pathway protein signal recognition particle protein FtsY [Anaerococcus lactolyticus ATCC 51172] Length = 467 Score = 205 bits (521), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 124/298 (41%), Positives = 187/298 (62%), Gaps = 3/298 (1%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 S +L KG + T ++++ + ++DD + +ELE++LI +DIG++ +IV+ L Sbjct: 165 SIFDRLKKGLSKTRDSFTSSLSNLFTRNVKIDDDLYDELEEILISADIGMSSTIEIVDSL 224 Query: 71 LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVI 128 ++ + + +Y V E++ + L + F + VILV+GVNGVGKTT I Sbjct: 225 RSEIKKRSIKDSDKIYPVLKEIMTQKLDENNLDNGIKFEKGKLTVILVIGVNGVGKTTTI 284 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ + G KVMLAA DTFR+AAIDQL+ WA+R + + + G+D +A+ ++A K Sbjct: 285 GKLANNFKNDGKKVMLAAADTFRAAAIDQLQEWAERADVELIAHKEGADPSAVIFDAIKS 344 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A++K VD+LI DTAGRLHN LM + K+ R + +A L VLDATTGQNA+ Q Sbjct: 345 ARSKDVDILICDTAGRLHNKKNLMQELEKINRTIDTHAVNANRENLLVLDATTGQNAVSQ 404 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++ F V TGLI+TK+DGTA+GG + P+ V ++PV ++GVGEGIN L+ F + F Sbjct: 405 LKEFKNVTDITGLILTKLDGTAKGGVIFPLQVEVEVPVKYIGVGEGINHLQKFDSNSF 462 >gi|319902103|ref|YP_004161831.1| signal recognition particle-docking protein FtsY [Bacteroides helcogenes P 36-108] gi|319417134|gb|ADV44245.1| signal recognition particle-docking protein FtsY [Bacteroides helcogenes P 36-108] Length = 319 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 118/296 (39%), Positives = 173/296 (58%), Gaps = 6/296 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEEL----L 71 L KG + T + I ++ + ++DD V + LE++LI SD+GV KI+ + Sbjct: 15 LDKGLSKTKESVFGKIARTVAGKSKVDDEVLDNLEEVLITSDVGVETTLKIIGRIEKRAA 74 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++Y + +L D ++ L+ + F +P+VI+VVGVNGVGKTT IGK Sbjct: 75 AEKYMNAQELNMILRDEIAALLTENNSKDVDDFEAPIMKKPYVIMVVGVNGVGKTTTIGK 134 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + AG V L A DTFR+AA++QL IW +R V ++G+D A++A++ A Sbjct: 135 LAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGADPASVAFDTLSSAV 194 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A DV+IIDTAGRLHN LM + K+ V+K++ AP VL VLD +TGQNA Q Sbjct: 195 ANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVSDAPDEVLLVLDGSTGQNAFEQAR 254 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F T + +TK+DGTA+GG +I I KIPV ++G+GEG+ DL+ F +F Sbjct: 255 QFTLATEVTAMAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKVEF 310 >gi|20807911|ref|NP_623082.1| Signal recognition particle GTPase [Thermoanaerobacter tengcongensis MB4] gi|20516478|gb|AAM24686.1| Signal recognition particle GTPase [Thermoanaerobacter tengcongensis MB4] Length = 295 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 111/256 (43%), Positives = 162/256 (63%), Gaps = 4/256 (1%) Query: 56 SDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114 +D+GV KI++ L K + K +V +++ I+++L +PF P VI Sbjct: 41 ADVGVDTTYKIIQSLKQKTKEEKIFEASKVRELLAQEIYEILQKDVEPF---VLTSPMVI 97 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 L+VGVNGVGKTT IGKL+ G VM+ A DTFR+AAIDQL++WA R + + + Sbjct: 98 LIVGVNGVGKTTTIGKLAHLYKKQGKSVMMVAADTFRAAAIDQLEVWAKRVNCPIIKHQE 157 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 GSD A++ ++ + A+A+ +DV+I DTAGRLHN LM + K+ +V+ R A Sbjct: 158 GSDPASVVFDGLQSAKARGIDVVICDTAGRLHNKKNLMEELRKIRKVIDREYSEARVETF 217 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VLDATTGQNAL+Q ++F VA TG+I+TK+DGTA+GG +I I +P+ ++G+GEG Sbjct: 218 LVLDATTGQNALQQAKIFKEVADITGIILTKLDGTAKGGIVIAIKEELNLPIRYIGIGEG 277 Query: 295 INDLEPFVAKDFSAVI 310 + DL+ F AK F + I Sbjct: 278 MEDLQAFDAKSFVSAI 293 >gi|262341286|ref|YP_003284141.1| cell division protein FtsY [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272623|gb|ACY40531.1| cell division protein FtsY [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 317 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 111/274 (40%), Positives = 173/274 (63%), Gaps = 10/274 (3%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99 +++ V +++ED+L+ +DIG+ KI++ L KR K+ R D+ L+ K + L Sbjct: 40 KIEINVIDQMEDILLSADIGIPTTIKIIDNL-EKRIQKEKY--RDTQDLYNLLKKEIENL 96 Query: 100 SKPFNWDF------SHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 + SH+ P+VI++VGVNGVGKTT IGKL+ + G ++ A DTFR+ Sbjct: 97 FINIKNECLEKKIKSHKKPYVIMMVGVNGVGKTTTIGKLAFLLKKKGFHSIIGASDTFRA 156 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAIDQL+IWA++ + + +D A++AY+ + A++K+ DV++IDTAGRL N LM Sbjct: 157 AAIDQLEIWANKAKVPLIKQHMYADPASVAYDTLQSAKSKEKDVVLIDTAGRLQNRIGLM 216 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + K+ RV+K++ P +PH ++ VLDA+TGQNA QV+ F + +++TK++GTA+G Sbjct: 217 EELSKISRVMKKIIPESPHEIMLVLDASTGQNAFEQVKKFTFFVKISSIVLTKIEGTAKG 276 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G I I+ KIP+ +LG GE I DL+ F K F Sbjct: 277 GVAIGIMDQFKIPIQYLGTGEKIQDLKEFDGKKF 310 >gi|327461018|gb|EGF07351.1| cell division protein FtsY [Streptococcus sanguinis SK1057] Length = 504 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 118/263 (44%), Positives = 158/263 (60%), Gaps = 18/263 (6%) Query: 54 IRSDIGVAVAQKIVEELLTKRY------AKDVSVQRVLYDVSELIHKMLMPLSKPFNWD- 106 I SD+GV VA + EEL RY AK + R L +I K++ K +D Sbjct: 241 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQL-----IIEKLVDIYEKDGRFDE 292 Query: 107 ---FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 F + V+L VGVNGVGKTT IGKL+ K G KVML A DTFR+ A+ QL W Sbjct: 293 KINFQNGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGR 352 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 R V SD A++ Y+ ++AQA++VDVL+IDTAGRL N LMA + K+ R++K Sbjct: 353 RVDVPVVTGPEKSDPASVVYDGMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIK 412 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 R+DP APH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I Sbjct: 413 RVDPEAPHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELD 472 Query: 284 IPVYFLGVGEGINDLEPFVAKDF 306 IPV +G GE I+D+ F +++F Sbjct: 473 IPVKLIGFGEKIDDIGEFNSENF 495 >gi|225868197|ref|YP_002744145.1| cell division protein FtsY [Streptococcus equi subsp. zooepidemicus] gi|225701473|emb|CAW98619.1| putative cell division protein FtsY [Streptococcus equi subsp. zooepidemicus] Length = 485 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 123/304 (40%), Positives = 177/304 (58%), Gaps = 11/304 (3%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 S+ + R L K S +L + RR+D+ E+LE+LLI SD+GV VA + Sbjct: 179 SDQEKYKRSLKKTRTGFSARLNSFFANF---RRVDEDFFEDLEELLILSDVGVHVATTLT 235 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK---PFNWDFSHRPH--VILVVGVNGV 122 EEL RY + + + LI + L+ + + +N ++ V+L VGVNGV Sbjct: 236 EEL---RYEAKLENAKKPEALKRLIIEKLVAIYEGDGRYNEAIHYQQDLTVMLFVGVNGV 292 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+ + G KVML A DTFR+ A+ QL W R + +D A++ Sbjct: 293 GKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVITGPEKADPASVV 352 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++ ++A A+K D+L+IDTAGRL N LMA + K+ R++KR+ P APH L LDA+TG Sbjct: 353 FDGVERAVAEKADILLIDTAGRLQNKDNLMAELEKIGRIIKRVIPDAPHETLLALDASTG 412 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV +G GE I+D+ F Sbjct: 413 QNALSQAKEFSKITPLTGLILTKIDGTAKGGIVLAIRQELDIPVKLIGFGEAIDDIGEFH 472 Query: 303 AKDF 306 ++DF Sbjct: 473 SEDF 476 >gi|291532927|emb|CBL06040.1| signal recognition particle-docking protein FtsY [Megamonas hypermegale ART12/1] Length = 251 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 112/200 (56%), Positives = 144/200 (72%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VILV+GVNGVGKTT IGKL + + G VM AA DTFR+AAIDQL+IW R + + Sbjct: 45 PTVILVIGVNGVGKTTTIGKLGRYYKEQGKNVMFAAADTFRAAAIDQLEIWGQRVNVPVI 104 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 E GSD AA+ ++A K A A+KVD+LIIDTAGRLHN + LM + K+ RV+KR AP Sbjct: 105 KHEEGSDPAAVVFDAVKAAIARKVDILIIDTAGRLHNKANLMTELNKIQRVIKREIAEAP 164 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 H L VLDATTGQNA+ Q E+F A +GL++TK+DGTA+GG +I + +PV ++G Sbjct: 165 HETLLVLDATTGQNAISQAELFTKSAPISGLVLTKLDGTAKGGVVIGLKSELSMPVKWIG 224 Query: 291 VGEGINDLEPFVAKDFSAVI 310 VGEG++DL PFVA DF+A + Sbjct: 225 VGEGMDDLRPFVANDFAAAL 244 >gi|116618657|ref|YP_819028.1| signal recognition particle-docking protein FtsY [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097504|gb|ABJ62655.1| signal recognition particle-docking protein FtsY [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 442 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 114/275 (41%), Positives = 167/275 (60%), Gaps = 9/275 (3%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-- 96 R +D+ E+LE+ L+ +D+G +A KI +EL + K+ + + DV +I KM+ Sbjct: 159 RSVDENFFEDLEETLVGADVGFDMAIKISDELREEVKLKNAKRKEDVRDV--IIKKMVDL 216 Query: 97 -----MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 + N+ + VIL VGVNGVGKTT IGKL+ K AG V+LAA DTFR Sbjct: 217 YEADGINEDATMNFAPKGQTTVILFVGVNGVGKTTTIGKLASKYQKAGKSVLLAAADTFR 276 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 + A QL+ W +R V + +D A++ + A ++A+ + DVL +DTAGRL NN L Sbjct: 277 AGATKQLQEWGERAHVPVVAGKEKADPASVVFAAVEKARDENYDVLFVDTAGRLQNNVNL 336 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M + KM R+++R P APH VL VLDATTGQNAL+Q ++F + +G+++TKMDGTA+ Sbjct: 337 MQELEKMKRIIQREIPEAPHEVLLVLDATTGQNALQQAKLFKNSSDVSGIVLTKMDGTAK 396 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 GG + I +PV ++G GE +DL F ++F Sbjct: 397 GGIVFAIRNEMHLPVKWIGFGEKASDLREFKPEEF 431 >gi|225419774|ref|ZP_03762077.1| hypothetical protein CLOSTASPAR_06112 [Clostridium asparagiforme DSM 15981] gi|225041578|gb|EEG51824.1| hypothetical protein CLOSTASPAR_06112 [Clostridium asparagiforme DSM 15981] Length = 314 Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/296 (42%), Positives = 180/296 (60%), Gaps = 4/296 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L +G T + GI I S +DD EE+E+ LI DIG+ IVE+L Sbjct: 8 FFGRLVEGLTKTRNNIVSGIDSIFSGFSAIDDDFYEEIEETLIMGDIGIQTTMSIVEDL- 66 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGK 130 +R K++ ++ LI+ + + N ++F H+ V+LV+GVNGVGKTT +GK Sbjct: 67 -RRKVKELHIKEPEECKELLINSIKDQMDLGENAYEFEHKKSVVLVIGVNGVGKTTSVGK 125 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ ++ D G KV+LAA DTFR+AAI+QL W++R + + + GSD AA+ Y+A A+ Sbjct: 126 LAGQLKDQGRKVILAAADTFRAAAIEQLTEWSNRAGVEIIAQQEGSDPAAVIYDAVAAAK 185 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 ++ DVLI DTAGRLHN LM + K+ R++ + A L VLD TTGQNAL Q Sbjct: 186 SRHADVLICDTAGRLHNKKNLMEELRKINRIIDKEYADAYRETLVVLDGTTGQNALAQAR 245 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F VA TG+I+TK+DGTA+GG + I +PV ++G+GE I+DL+ F A DF Sbjct: 246 QFMEVADITGIILTKLDGTAKGGIAVAIQSELGLPVKYIGIGEKIDDLQKFNADDF 301 >gi|325690810|gb|EGD32811.1| cell division protein FtsY [Streptococcus sanguinis SK115] Length = 506 Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 114/258 (44%), Positives = 159/258 (61%), Gaps = 8/258 (3%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108 I SD+GV VA + EEL RY + + + +LI + L+ + + FN +F Sbjct: 243 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 299 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + V+L VGVNGVGKTT IGKL+ K G KVML A DTFR+ A+ QL W R Sbjct: 300 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 359 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V SD A++ Y+ ++AQ+++VDVL+IDTAGRL N LMA + K+ R++KR+DP Sbjct: 360 VVTGPEKSDPASVVYDGMERAQSEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 419 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 APH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV Sbjct: 420 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 479 Query: 289 LGVGEGINDLEPFVAKDF 306 +G GE I+D+ F +++F Sbjct: 480 IGFGEKIDDIGEFNSENF 497 >gi|308271405|emb|CBX28013.1| Cell division protein ftsY homolog [uncultured Desulfobacterium sp.] Length = 283 Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 124/285 (43%), Positives = 188/285 (65%), Gaps = 13/285 (4%) Query: 28 LKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY 86 + +G+T+I S ++ +DD + EELE+LLI SDIGV A +++ + K + Q Sbjct: 1 MSDGLTNIFSGKKVIDDDMLEELEELLITSDIGVQTASDLIKSISKKTSSISSPDQ---- 56 Query: 87 DVSELIHKMLMPL-----SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 ++E+I + ++ L S+P + +PHVILV+GVNGVGKTT IGKL+ K + K Sbjct: 57 -LNEIIKQEILALLSDKVSEPKT--ITAKPHVILVIGVNGVGKTTTIGKLAAKYAAKNKK 113 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 V++ A DTFR+AA++QL IWA R ++ V +D AA+AY+ + A A+ +DV+IIDT Sbjct: 114 VLIVAADTFRAAAVEQLTIWAQRAGSEIVKQMHNADPAAVAYDGVEAALARNIDVVIIDT 173 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AGRLH LM + K+ R + + P APH +L VLDATTGQNAL Q ++F+ G TG+ Sbjct: 174 AGRLHTKINLMEELKKIKRSVSKRMPDAPHEILLVLDATTGQNALSQAKLFNDAIGVTGI 233 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +TK+DGTA+GG +I + + K+P+ ++G+GE I+DL+ F ++F Sbjct: 234 ALTKLDGTAKGGIVISVCNSFKLPIQYIGIGENIDDLQEFDPQNF 278 >gi|32472944|ref|NP_865938.1| cell division protein FtsY [Rhodopirellula baltica SH 1] gi|32397623|emb|CAD73624.1| cell division protein FtsY [Rhodopirellula baltica SH 1] Length = 337 Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 121/300 (40%), Positives = 176/300 (58%), Gaps = 9/300 (3%) Query: 16 KLTKGFASTSLKLKEGITDIISS--RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 K+ G T L I D+ + R +D+ EL LIR+D+G A +I + + Sbjct: 39 KMKTGLQKTRRVLGTDIRDLFKAEGRLVDEDFLGELYARLIRTDMGAGPAGRIRDRVAKD 98 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 + V ++ V+ +++ I + L K + D + P VILVVGVNG GKTT IGK Sbjct: 99 FRGRVVHLEEVVETITQDIREQL----KQDHGDLAKADSPPTVILVVGVNGSGKTTSIGK 154 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 LS + G K++L AGDTFR+AA++QL IW++R + V G D A++AY+ ++A Sbjct: 155 LSHHLVSQGHKIVLGAGDTFRAAAVEQLTIWSERIGCEIVTGPSGVDPASVAYQTTEKAV 214 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 D IIDTAGRL LM + K+ RV+ + P APH VL VLDAT GQNA+ Q + Sbjct: 215 EIGADYAIIDTAGRLQTQGKLMQELEKIRRVIDKKLPGAPHEVLLVLDATAGQNAISQAK 274 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F AG TG+I++K+DG+A+GG ++PI ++PV F+G+GEGI D+ F F+A + Sbjct: 275 GFSNAAGCTGIILSKLDGSAKGGVVLPIREQFELPVKFVGLGEGIEDMTKFDPDTFAAAL 334 >gi|88802664|ref|ZP_01118191.1| putative recognition particle-docking protein [Polaribacter irgensii 23-P] gi|88781522|gb|EAR12700.1| putative recognition particle-docking protein [Polaribacter irgensii 23-P] Length = 317 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 128/299 (42%), Positives = 185/299 (61%), Gaps = 8/299 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG T + ++ ++ + +D V + LE++L+ SD+GV KI++ + +R Sbjct: 16 LDKGLEKTKANFFDKLSKAVAGKSTVDAAVLDNLEEVLVASDVGVKTTLKIIKRI-EERV 74 Query: 76 AKDVSVQR------VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 AKD + + ++S L+ + + F + +P+V++VVGVNGVGKTT IG Sbjct: 75 AKDKYLGTDELNALLKEEISGLLSETNLENETEFTIPANKKPYVVMVVGVNGVGKTTTIG 134 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + GLKV+L A DTFR+AAIDQL+IWADRT V E+GSD A++A++ A Sbjct: 135 KLASQFKKQGLKVVLGAADTFRAAAIDQLQIWADRTDVPIVRQEMGSDPASVAFDTLTSA 194 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DV+IIDTAGRLHN LM + K+ RV++++ APH VL VLD +TGQNA Q Sbjct: 195 VKQDADVVIIDTAGRLHNKVNLMNELTKIKRVMQKVVVDAPHEVLLVLDGSTGQNAFEQA 254 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F T L +TK+DGTA+GG +I I KIPV ++GVGEGI+DL+ F +F A Sbjct: 255 KHFTLATEVTSLAVTKLDGTAKGGVVIGISDQFKIPVKYIGVGEGIDDLQVFNKDEFVA 313 >gi|225849666|ref|YP_002729900.1| signal recognition particle-docking protein FtsY [Persephonella marina EX-H1] gi|225645118|gb|ACO03304.1| signal recognition particle-docking protein FtsY [Persephonella marina EX-H1] Length = 304 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 116/298 (38%), Positives = 184/298 (61%), Gaps = 6/298 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S + KL +G + T ++ + I R++D+ + E++E +L+++D+G+ ++I++ L Sbjct: 4 SIVSKLKEGLSKTKKQISDSFNLISFGRKIDESLFEDIEMVLLKADVGLKATEEIIQFLR 63 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVI 128 + + ++ D+ EL+ + L + K +P VIL +G+NG GKTT I Sbjct: 64 EESKKRKITEGE---DLKELLKEKLYEILKKCEGKLELGDQKPAVILFLGINGSGKTTTI 120 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ + G V+LAA DTFR+AAIDQL++WA+R+ A V G+D +A+ Y+A Sbjct: 121 GKLASQFVQEGKSVVLAAADTFRAAAIDQLEVWAERSGARIVKHTQGADPSAVVYDAVNS 180 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+++ D+++IDTAGRLH LM + K+ R +K+L P P + VLD T GQN++ Q Sbjct: 181 AKSRGDDIVLIDTAGRLHTKEHLMKELQKIKRTIKKLMPDQPVETILVLDGTIGQNSINQ 240 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F TG+++TK+DGTA+GG +IPI IPV F+GVGE I DL+PF AK+F Sbjct: 241 AKTFKESTDVTGIVITKLDGTAKGGAIIPICQELCIPVKFIGVGEDIEDLQPFDAKNF 298 >gi|317131324|ref|YP_004090638.1| signal recognition particle-docking protein FtsY [Ethanoligenens harbinense YUAN-3] gi|315469303|gb|ADU25907.1| signal recognition particle-docking protein FtsY [Ethanoligenens harbinense YUAN-3] Length = 312 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 116/257 (45%), Positives = 160/257 (62%), Gaps = 10/257 (3%) Query: 54 IRSDIGVAVAQKIVEEL---LTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109 + SD+GVA + ++E+L + K + D V+ L V M L + + Sbjct: 45 VSSDVGVATSTYLIEKLRGRVKKEHIVDTDGVREALKAV------MTGELEGDVSLLLAP 98 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+LV+GVNGVGKTT IGKL+ ++ G V+L A DTFR+AAIDQL+IWA+R D Sbjct: 99 APAVLLVIGVNGVGKTTTIGKLAAQLKAEGKAVLLGAADTFRAAAIDQLEIWAERAGVDI 158 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V + G+D AA+ ++A + +A+ DV+I DTAGRLHN LM + K+ RV+ R P A Sbjct: 159 VKQKEGADPAAVVFDAVQAGKARGADVVICDTAGRLHNKKSLMDELSKISRVIDRELPGA 218 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 L VLDATTGQNA+ Q + F AG TG+I+TK+DGTARGG + I +PV ++ Sbjct: 219 ARENLLVLDATTGQNAVNQAKQFKEAAGLTGIILTKLDGTARGGVVFAIRHELGVPVKYI 278 Query: 290 GVGEGINDLEPFVAKDF 306 GVGE I+DL+PF + F Sbjct: 279 GVGEQIDDLQPFDPRAF 295 >gi|182413527|ref|YP_001818593.1| signal recognition particle-docking protein FtsY [Opitutus terrae PB90-1] gi|177840741|gb|ACB74993.1| signal recognition particle-docking protein FtsY [Opitutus terrae PB90-1] Length = 319 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 117/314 (37%), Positives = 175/314 (55%), Gaps = 16/314 (5%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 +K G A T + + R++D EELE+ L +D GV ++I+ E+ Sbjct: 5 FKKFKDGLAKTVSTIAAKTHGLFGGRKIDAASLEELEEALYAADFGVETTEEILAEI-KA 63 Query: 74 RYAKDVSV-------------QRVLYDVSELIHKMLMPLSKPFNWDF--SHRPHVILVVG 118 YAKD ++ +RVL + P + S P VI ++G Sbjct: 64 AYAKDKTLQGQAAAAIGAAVLKRVLAGSEGALDGAGAGGPGPGSASPATSKEPIVIAMIG 123 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNG GKTT KL ++ + G V LAA DTFR+AA++QLK WA R + V S G+D+ Sbjct: 124 VNGSGKTTTAAKLGWRLKEDGKTVTLAACDTFRAAAVEQLKTWATRLDLEIVASHTGADS 183 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+A++A++ A+++ D LI+DTAGRLH LM + K+ RVL++ DP AP V+D Sbjct: 184 AAVAFDAWQAAKSRGRDYLIVDTAGRLHTKHNLMEELAKIRRVLQKNDPTAPQHRWLVVD 243 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 + G N++ Q FH G TGL++TK+DGT+RGG ++ I K+P+YFLG+GE DL Sbjct: 244 GSLGSNSIEQARAFHKSFGLTGLVVTKLDGTSRGGAIVGIYRQLKLPIYFLGLGEQAEDL 303 Query: 299 EPFVAKDFSAVITG 312 +PF +++ + G Sbjct: 304 QPFSVENYVNALFG 317 >gi|257469323|ref|ZP_05633417.1| Signal recognition particle receptor FtsY [Fusobacterium ulcerans ATCC 49185] Length = 386 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 133/307 (43%), Positives = 186/307 (60%), Gaps = 19/307 (6%) Query: 18 TKGFASTSLKLK-----EGI-----TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 +KGF TSLK K EG+ + I+ +D + EELED+LI+SDIG+ + KIV Sbjct: 83 SKGFF-TSLKDKLFKSREGLFGKLKSFILGRSVIDFEMYEELEDILIQSDIGMDMTVKIV 141 Query: 68 ---EELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 E+ + KR KD + +Y V E++ L+ + + +VILVVGVNGVG Sbjct: 142 GALEKEVKKRGIKD---PKDIYPVLKEVMEGFLIKEGNDIVIE-DGKLNVILVVGVNGVG 197 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+ K G KV+L AGDTFR+AAI+QL+ WA R+ A+ V S GSD A+ + Sbjct: 198 KTTTIGKLASKFVKDGKKVILGAGDTFRAAAIEQLEEWAKRSGAEIVKSTQGSDPGAVVF 257 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 + A+A+ D+ IIDTAGRLHN + LM + K+ ++K+ + + V+D TTGQ Sbjct: 258 DTLAAAEARGADIAIIDTAGRLHNKNNLMKELEKIHNIIKKKLGDQHYESILVIDGTTGQ 317 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 N L Q ++F+ V TG I+TK+DGTA+GG + I K P+ F+GVGE I DL F A Sbjct: 318 NGLSQAKVFNEVTDLTGFIITKLDGTAKGGIVFSISEEIKKPIKFIGVGEKIEDLRKFDA 377 Query: 304 KDFSAVI 310 K++ I Sbjct: 378 KEYIQAI 384 >gi|293510004|ref|ZP_06668712.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus subsp. aureus M809] gi|291466948|gb|EFF09466.1| signal recognition particle-docking protein FtsY [Staphylococcus aureus subsp. aureus M809] Length = 228 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 101/193 (52%), Positives = 132/193 (68%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 +L+VGVNGVGKTT IGKL+ + G KVMLAAGDTFR+ AIDQLK+W +R D + Sbjct: 1 MLMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQS 60 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 GSD AA+ Y+A A+ K VD+LI DTAGRL N + LM + K+ RV+ R P APH Sbjct: 61 EGSDPAAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEA 120 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L LDATTGQNAL Q F V TG+++TK+DGTA+GG ++ I IPV ++G+GE Sbjct: 121 LLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGE 180 Query: 294 GINDLEPFVAKDF 306 ++DL+PF + + Sbjct: 181 QLDDLQPFNPESY 193 >gi|81428324|ref|YP_395324.1| Signal recognition particle-docking protein FtsY [Lactobacillus sakei subsp. sakei 23K] gi|78609966|emb|CAI55013.1| Signal recognition particle-docking protein FtsY [Lactobacillus sakei subsp. sakei 23K] Length = 487 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 115/276 (41%), Positives = 168/276 (60%), Gaps = 11/276 (3%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R +D+ +++E++LI +D+G A KI +EL + ++V VS+ I + L+ Sbjct: 188 RSVDESFFDDVEEMLIEADVGYETAMKIADELREEVKLRNVKKPEA---VSQAIVEKLVD 244 Query: 99 LSKPFNWDFSHRPH--------VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 L + H V L VGVNG GKTT IGK + ++ AG KV+LAAGDTF Sbjct: 245 LYGQEGQQEDNELHFAPEGELTVFLFVGVNGAGKTTSIGKCAHQLEKAGKKVLLAAGDTF 304 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R+ AI+QL+ W R S V ++ GSD AA+A++A K+A+ + DVL++DTAGRL NN Sbjct: 305 RAGAIEQLQEWGRRVSVPVVANKAGSDPAAVAFDAVKRAKEENFDVLLVDTAGRLQNNVN 364 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + K+ RV+ R AP VL VLDATTGQNAL Q + F + TG+++TK+DG+A Sbjct: 365 LMKELEKVKRVITREISSAPQEVLLVLDATTGQNALVQAKQFKSTTDVTGIVLTKLDGSA 424 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +GG ++ + +PV +G+GE +NDL+ F F Sbjct: 425 KGGIVLAVRTELHLPVKMVGLGEQMNDLQLFDPNRF 460 >gi|195978483|ref|YP_002123727.1| signal recognition particle receptor protein FtsY (alpha subunit) [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975188|gb|ACG62714.1| signal recognition particle receptor protein FtsY (alpha subunit) [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 485 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 122/304 (40%), Positives = 177/304 (58%), Gaps = 11/304 (3%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 S+ + R L K S +L + RR+D+ E+LE+LLI SD+GV VA + Sbjct: 179 SDQEKYKRSLKKTRTGFSARLNSFFANF---RRVDEDFFEDLEELLILSDVGVHVATTLT 235 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK---PFNWDFSHRPH--VILVVGVNGV 122 EEL RY + + + LI + L+ + + +N ++ V+L VGVNGV Sbjct: 236 EEL---RYEAKLENAKKPEALKRLIIEKLVAIYEGDGRYNEAIHYQQDLTVMLFVGVNGV 292 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+ + G KVML A DTFR+ A+ QL W R + +D A++ Sbjct: 293 GKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVITGPEKADPASVV 352 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++ ++A A++ D+L+IDTAGRL N LMA + K+ R++KR+ P APH L LDA+TG Sbjct: 353 FDGVERAVAERADILLIDTAGRLQNKDNLMAELEKIGRIIKRVIPDAPHETLLALDASTG 412 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV +G GE I+D+ F Sbjct: 413 QNALSQAKEFSKITPLTGLILTKIDGTAKGGIVLAIRQELDIPVKLIGFGEAIDDIGEFH 472 Query: 303 AKDF 306 ++DF Sbjct: 473 SEDF 476 >gi|260583721|ref|ZP_05851469.1| signal recognition particle-docking protein FtsY [Granulicatella elegans ATCC 700633] gi|260158347|gb|EEW93415.1| signal recognition particle-docking protein FtsY [Granulicatella elegans ATCC 700633] Length = 335 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 119/302 (39%), Positives = 175/302 (57%), Gaps = 14/302 (4%) Query: 14 IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG----VAVAQKIVE 68 I K +G T + + + ++ R +D+ ++LE+ I SD+G +A+ + + Sbjct: 29 IDKYDQGMQKTRKSFSDHLNEFLADFRTIDEDFFDDLEETFISSDVGFEMTLAITDALRD 88 Query: 69 ELLTKRYAKDVSVQRV----LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 E+ K V++V + D+ E L L+K RP V+L VGVNGVGK Sbjct: 89 EVRLKNAKNAHDVKQVIIEKMVDIYEKGEDNLATLAKA-----EGRPTVLLFVGVNGVGK 143 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGK++ ++ G V+LAAGDTFR+ AI QL+IW +R V + G D +++ Y+ Sbjct: 144 TTTIGKIAWRLKQEGHSVLLAAGDTFRAGAIQQLEIWGERVGVPVVSGKEGGDPSSVVYD 203 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A K+A+A+ +D L+IDTAGRL N LM + KM R++ R L VLDATTGQN Sbjct: 204 AIKKAKAENIDYLLIDTAGRLQNKVNLMKELEKMNRIISREIETGADETLLVLDATTGQN 263 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 AL Q + F TGLI+TK+DGTA+GG ++ I IPV F+G+GE ++DL+PF + Sbjct: 264 ALVQAKQFKETIDVTGLILTKLDGTAKGGVILSIRHEMNIPVKFIGLGEKMDDLQPFDST 323 Query: 305 DF 306 F Sbjct: 324 QF 325 >gi|227530554|ref|ZP_03960603.1| signal recognition particle-docking protein FtsY [Lactobacillus vaginalis ATCC 49540] gi|227349560|gb|EEJ39851.1| signal recognition particle-docking protein FtsY [Lactobacillus vaginalis ATCC 49540] Length = 456 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 111/260 (42%), Positives = 158/260 (60%), Gaps = 10/260 (3%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL------SKPFNWDF 107 I SD+G +A K+ +EL R + + DVS +I + ++ L + + +F Sbjct: 188 IESDVGYDMAMKLSDEL---REEVKLQNAKSKQDVSNVIIEKMVELYDEAGKDEKSDLNF 244 Query: 108 SHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P VI+ VGVNG GKTT IGK++ G KV+LAA DTFR+ A +QL +WA R Sbjct: 245 AKEGPTVIMFVGVNGAGKTTTIGKMAALFKSQGKKVLLAAADTFRAGATEQLDVWAKRDG 304 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D V D AA+ ++A ++A+ + D+L +DTAGRL N LM + KM R+L R Sbjct: 305 VDIVTGPENGDPAAVVFDAVQKAKKEDYDILFVDTAGRLQNKVNLMKELAKMKRILTREI 364 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL VLDATTGQNAL Q ++F TG+++TK+DGTARGG ++ I +PV Sbjct: 365 PDAPHEVLLVLDATTGQNALNQAKLFKESTDVTGIVLTKLDGTARGGIVLAIRNELHLPV 424 Query: 287 YFLGVGEGINDLEPFVAKDF 306 ++G+GE +NDL+ F A +F Sbjct: 425 KYVGLGEKVNDLQKFDASEF 444 >gi|283798074|ref|ZP_06347227.1| signal recognition particle-docking protein FtsY [Clostridium sp. M62/1] gi|291074216|gb|EFE11580.1| signal recognition particle-docking protein FtsY [Clostridium sp. M62/1] Length = 311 Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 129/301 (42%), Positives = 182/301 (60%), Gaps = 14/301 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L +G T + GI I S +DD EE+E+ LI D+G+ I+E+L Sbjct: 8 FFGRLVEGLTKTRNSIVAGIDTIFSGFSAIDDDFYEEIEETLIMGDLGIQTTMAIMEDLR 67 Query: 72 TK---RYAKDVSVQRVLYDVSELIHKML---MPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 K + K+ S D EL+ + + M L + ++F +R V+LV+GVNGVGKT Sbjct: 68 AKVKEHHIKEPS------DCKELLIESIRSQMDLGEN-AYEFENRKSVVLVIGVNGVGKT 120 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T +GKL+ ++ G KV+LAA DTFR+AAI+QL WA+R D + + GSD AA+ Y+A Sbjct: 121 TSVGKLAGQLKGQGKKVILAAADTFRAAAIEQLTEWANRAGVDLIAQQEGSDPAAVIYDA 180 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+++ DVLI DTAGRLHN LM + K+ R++ + P A L VLD TTGQNA Sbjct: 181 IAAAKSRHADVLICDTAGRLHNKKNLMEELKKINRIIDKEFPEAYRETLVVLDGTTGQNA 240 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L Q + F VA TG+I+TK+DGTA+GG + I IPV ++G+GE I+DL+ F A D Sbjct: 241 LSQAKQFMEVADITGIILTKLDGTAKGGIAVAIQSELGIPVKYVGIGEKIDDLQKFNAND 300 Query: 306 F 306 F Sbjct: 301 F 301 >gi|281357053|ref|ZP_06243543.1| signal recognition particle-docking protein FtsY [Victivallis vadensis ATCC BAA-548] gi|281316611|gb|EFB00635.1| signal recognition particle-docking protein FtsY [Victivallis vadensis ATCC BAA-548] Length = 309 Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 105/274 (38%), Positives = 171/274 (62%), Gaps = 6/274 (2%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS-ELIHKMLMPLSKPFNW 105 ++LE +LI++D GV + +IV ++ + +++ L V+ E + +L +P N+ Sbjct: 39 DDLEAMLIQADFGVPASLRIVGDIRDRYERGEIATDADLVKVAMETVTTILNSRVRPVNF 98 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 +P VIL+VGVNG GKTT IGKL+ ++ KV+LAA DTFR+AA++QL++W +RT Sbjct: 99 APEGKPTVILMVGVNGSGKTTTIGKLAARLKAENKKVILAACDTFRAAAVEQLQLWGERT 158 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 V ++ G+D A++A++A + A A+ D L+IDTAGR HN LM + K+ R ++++ Sbjct: 159 GCQVVSAKHGADPASVAFDATQAALARGADFLLIDTAGRQHNQKGLMDELAKIRRSIEKV 218 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P APH V +DA+ G N + Q F G TGL++TK+DGT +GG ++ + ++P Sbjct: 219 YPGAPHEVWLTVDASLGGNVVNQAREFTKTTGVTGLVLTKLDGTGKGGMVVALHQEFELP 278 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEE 319 +F+G GE DL+PF A+ ++ + +GEE Sbjct: 279 TFFIGFGEQPEDLQPFSAEYYAGAL-----FGEE 307 >gi|42522713|ref|NP_968093.1| signal recognition particle-docking protein FtsY [Bdellovibrio bacteriovorus HD100] gi|39573909|emb|CAE79086.1| signal recognition particle-docking protein FtsY [Bdellovibrio bacteriovorus HD100] Length = 402 Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 110/269 (40%), Positives = 167/269 (62%), Gaps = 9/269 (3%) Query: 47 EELEDLLIRSDIGVAVAQKI---VEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMP 98 EE+E++L SD+G A Q++ +E+ L+K+ D +++ + ++ + H + Sbjct: 128 EEIEEILYTSDLGPATVQRLMGAIEDKLSKKERADYDTVREALKEEIKNIFQGSHSTSVG 187 Query: 99 LSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 F+ P V+++VGVNG GKTT IGK+S +++ G KV++AAGDTFR+AA Q Sbjct: 188 TGILSKIQFAAEGPTVLMIVGVNGAGKTTSIGKISAQLAAEGKKVLVAAGDTFRAAAGGQ 247 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 LK+W DR + E +D +A+A++A + +A+ DV+I+DTAGRLH + LM I K Sbjct: 248 LKVWTDRAQVEIFSPEGVTDPSAVAFDAVAKGKAQGYDVVIVDTAGRLHTQANLMEEIKK 307 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 M RV+ ++ P APH L VLDA +GQNAL Q + FH TG ++TKMDGTA+GG + Sbjct: 308 MKRVMSKVIPEAPHETLIVLDANSGQNALMQAKEFHNALTLTGAVLTKMDGTAKGGVAVG 367 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + IP+ +GVGE I DL F +++F Sbjct: 368 LAQELHIPIKLIGVGERIQDLRTFSSQEF 396 >gi|328946759|gb|EGG40897.1| cell division protein FtsY [Streptococcus sanguinis SK1087] Length = 498 Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 115/258 (44%), Positives = 158/258 (61%), Gaps = 8/258 (3%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108 I SD+GV VA + EEL RY + + + +LI + L+ + + FN +F Sbjct: 235 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 291 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + V+L VGVNGVGKTT IGKL+ K G KVML A DTFR+ A+ QL W R Sbjct: 292 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 351 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V SD A++ Y+ ++A A+KVDVL+IDTAGRL N LMA + K+ R++KR+DP Sbjct: 352 VVTGPEKSDPASVVYDGMERALAEKVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 411 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 APH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV Sbjct: 412 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 471 Query: 289 LGVGEGINDLEPFVAKDF 306 +G GE I+D+ F +++F Sbjct: 472 IGFGEKIDDIGEFNSENF 489 >gi|194337595|ref|YP_002019389.1| signal recognition particle-docking protein FtsY [Pelodictyon phaeoclathratiforme BU-1] gi|194310072|gb|ACF44772.1| signal recognition particle-docking protein FtsY [Pelodictyon phaeoclathratiforme BU-1] Length = 317 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 126/308 (40%), Positives = 181/308 (58%), Gaps = 12/308 (3%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV----AVAQKIVE 68 I +L +G T +E + I + +DD EELE +L+ +D+GV + I E Sbjct: 9 ISRLKEGLEKTRDTFREKLAVITKGKTEIDDDFLEELETILVAADVGVETTLGIVDAITE 68 Query: 69 ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH----RPHVILVVGVNGVGK 124 + Y + + R+L E I ++L + DF +P+VIL+VGVNG GK Sbjct: 69 RAKQETYRSEEELNRMLM---EEIQQLLEETGEEHPLDFDAPLPAKPYVILIVGVNGAGK 125 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT + KL+ AG KV++AA DTFR+AA +QL+IWADR + GSD A++ Y+ Sbjct: 126 TTSVAKLAHNYDKAGKKVIIAAADTFRAAAYEQLQIWADRAGVPMIGQAQGSDPASVVYD 185 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A A ++ DV+++DTAGRLHN S LM + K++RV K+ P APH VL VLD TTGQN Sbjct: 186 AVSAAVSRNADVVLVDTAGRLHNKSHLMEELAKIMRVAKKRIPEAPHEVLLVLDGTTGQN 245 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ Q F TGL++TK+DGTA+GG ++ I K+PV ++GVGE I+DL+ F Sbjct: 246 AVLQAREFTKFVKVTGLVVTKLDGTAKGGIVLSISRELKLPVKYIGVGEKIDDLQLFDRA 305 Query: 305 DFSAVITG 312 +F + G Sbjct: 306 EFVKALLG 313 >gi|186680629|ref|YP_001863825.1| signal recognition particle-docking protein FtsY [Nostoc punctiforme PCC 73102] gi|186463081|gb|ACC78882.1| signal recognition particle-docking protein FtsY [Nostoc punctiforme PCC 73102] Length = 547 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 107/308 (34%), Positives = 180/308 (58%), Gaps = 5/308 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + V+ E ++W++KL +G T + + I+ L+ E+E LL+++D+GV Sbjct: 233 EDVSIEEITWLKKLRQGLDKTRRSILNQLKAIVGQGPLNQAAVTEIEALLLQADVGVEAT 292 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVI---LVVGV 119 I+ L TK + + + + + +++ ML P F+ + L+ GV Sbjct: 293 DFIINALQTKLREEVTAPEEAIAYLKKILRDMLDAPSIASHKTSFTPEKETLNIWLITGV 352 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178 NG GKTT IGK++ +G K ++ A DTFR+AA++Q+K+W R+ + + + +D Sbjct: 353 NGAGKTTTIGKIAHLGQKSGYKCLIGAADTFRAAAVEQVKVWGSRSGVEVIANPGKNTDP 412 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A AQ+++ ++L++DTAGRL N LM +GK+ R++ + P+A L VLD Sbjct: 413 AAVVFDAIAAAQSRQTELLLVDTAGRLQNKKNLMDELGKIRRIIDKKAPNAKVESLLVLD 472 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 AT GQN LRQ E+F A +G+++TK+DGTA+GG + +V +P+ F+G GEGI DL Sbjct: 473 ATLGQNGLRQAEVFSQAAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGAGEGIEDL 532 Query: 299 EPFVAKDF 306 PF + +F Sbjct: 533 RPFSSYEF 540 >gi|325696121|gb|EGD38012.1| cell division protein FtsY [Streptococcus sanguinis SK160] Length = 506 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 115/258 (44%), Positives = 158/258 (61%), Gaps = 8/258 (3%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108 I SD+GV VA + EEL RY + + + +LI + L+ + + FN +F Sbjct: 243 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 299 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + V+L VGVNGVGKTT IGKL+ K G KVML A DTFR+ A+ QL W R Sbjct: 300 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 359 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V SD A++ Y+ ++A A+KVDVL+IDTAGRL N LMA + K+ R++KR+DP Sbjct: 360 VVTGPEKSDPASVVYDGMERALAEKVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 419 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 APH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV Sbjct: 420 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 479 Query: 289 LGVGEGINDLEPFVAKDF 306 +G GE I+D+ F +++F Sbjct: 480 IGFGEKIDDIGEFNSENF 497 >gi|325694854|gb|EGD36759.1| cell division protein FtsY [Streptococcus sanguinis SK150] Length = 504 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 115/258 (44%), Positives = 158/258 (61%), Gaps = 8/258 (3%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108 I SD+GV VA + EEL RY + + + +LI + L+ + + FN +F Sbjct: 241 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 297 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + V+L VGVNGVGKTT IGKL+ K G KVML A DTFR+ A+ QL W R Sbjct: 298 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 357 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V SD A++ Y+ ++A A+KVDVL+IDTAGRL N LMA + K+ R++KR+DP Sbjct: 358 VVTGPEKSDPASVVYDGMERALAEKVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 417 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 APH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV Sbjct: 418 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 477 Query: 289 LGVGEGINDLEPFVAKDF 306 +G GE I+D+ F +++F Sbjct: 478 IGFGEKIDDIGEFNSENF 495 >gi|23098984|ref|NP_692450.1| signal recognition particle [Oceanobacillus iheyensis HTE831] gi|22777212|dbj|BAC13485.1| signal recognition particle (docking protein) [Oceanobacillus iheyensis HTE831] Length = 333 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 133/324 (41%), Positives = 186/324 (57%), Gaps = 26/324 (8%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63 K +E+ K +G T + D+I+ R++D+ EELE++LI +D+GV Sbjct: 12 KQDNETKQVTEKYQEGMKKTRNSFSGKLNDLIARYRKVDEDFFEELEEVLITADVGVTTV 71 Query: 64 QKIVEELL--TKRYA-------KDVSVQRVLY----DVSELIHKMLMPLSKPFNWDFSHR 110 +VEEL KR KDV ++++ D E I K+ + Sbjct: 72 MDLVEELKMEVKRQNIKDSEQIKDVISEKLVEIYYGDEDESIEKLKID---------GDG 122 Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VILVVGVNG GKTT IGKL+ ++ G V+LAAGDTFR+ AI+QL++W +R + Sbjct: 123 LKVILVVGVNGAGKTTSIGKLAHQLKQEGKNVVLAAGDTFRAGAIEQLEVWGERADVPVI 182 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 GSD AA+ Y+ + A+++ DVLI DTAGRL N LM + K+ RV++R P AP Sbjct: 183 KQSEGSDPAAVIYDGVQAAKSRNADVLICDTAGRLQNKVNLMNELSKVKRVIEREIPDAP 242 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 H VL VLDATTGQNAL Q F TG+++TK+DGTA+GG ++ I ++PV F+G Sbjct: 243 HEVLLVLDATTGQNALNQARTFSDATDVTGIVLTKLDGTAKGGIVLAIRNELQLPVKFVG 302 Query: 291 VGEGINDLEPFVAKDFSAVITGCL 314 +GE INDL+ F D SA + G Sbjct: 303 LGEKINDLQQF---DASAFVYGLF 323 >gi|291542643|emb|CBL15753.1| signal recognition particle-docking protein FtsY [Ruminococcus bromii L2-63] Length = 304 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 135/301 (44%), Positives = 190/301 (63%), Gaps = 9/301 (2%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +K+ +G T + I ++ S ++DD + EELE+LL+ D+GV A+KI +E Sbjct: 1 MGFFKKIKEGLKKTRDAVVGQIDSMLKSFTKIDDELFEELEELLVMGDVGVPTAEKICKE 60 Query: 70 L---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 L + K KD S + + E+I ML + D + P +ILV+GVNGVGKTT Sbjct: 61 LRERVKKEGIKDPS--EITSLLKEIIADMLRGGEE---LDLATSPSIILVIGVNGVGKTT 115 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+ +S G KV+LAA DTFR+AAI+QL+IWADR+ + + + GSD AA+ Y+A Sbjct: 116 TIGKLANALSKEGKKVILAAADTFRAAAIEQLEIWADRSKCEIIKQKEGSDPAAVIYDAI 175 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A+A+ DV+I DTAGRLHN LM + K+ RV+ R P A L VLDATTGQNA+ Sbjct: 176 SAAKARHADVIICDTAGRLHNKKHLMDELAKINRVIDRELPDASKEKLLVLDATTGQNAV 235 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q E F G TG+++TK+DGTA+GG ++ I IPV ++GVGE I+DL+PF F Sbjct: 236 NQAEQFRQATGITGIVLTKLDGTAKGGVVLAIKDGLGIPVKYIGVGEQIDDLQPFNPDAF 295 Query: 307 S 307 + Sbjct: 296 A 296 >gi|121611665|ref|YP_999472.1| signal recognition particle-docking protein FtsY [Verminephrobacter eiseniae EF01-2] gi|121556305|gb|ABM60454.1| signal recognition particle-docking protein FtsY [Verminephrobacter eiseniae EF01-2] Length = 373 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 134/301 (44%), Positives = 182/301 (60%), Gaps = 11/301 (3%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W+ +L G T I+ + + ++DD + EELE L+ +D GV ++ EL Sbjct: 79 WLLRLKSGLRKTG----SSISTVFTGTQIDDALYEELETALLLADTGVKATGHLLAEL-- 132 Query: 73 KRYAKD---VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 KR AK+ V ++E + ++L PL K +HRP VI+V GVNG GKTT IG Sbjct: 133 KRRAKERRATDPAAVKALLAEALAELLRPLEKTLVIG-AHRPTVIMVAGVNGAGKTTSIG 191 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K ++DAG V+LAA DTFR+AA +QL +WADR + V E G D AA+ ++A Sbjct: 192 KLTKHLADAGATVLLAAADTFRAAAREQLGVWADRNMVEIVGQE-GGDPAAVGFDAVSAG 250 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ DV+++DTAGRL LM + K+ RV+ + D APH VL VLD TGQNAL QV Sbjct: 251 KARGKDVVLVDTAGRLPTQLHLMQELAKIRRVIGKADAGAPHEVLLVLDGNTGQNALAQV 310 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 F TGLI+TK+DGTA+GG L I IPVYF+GVGE + DLE F A++FS Sbjct: 311 RAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPIPVYFIGVGEKLEDLETFNAREFSQA 370 Query: 310 I 310 + Sbjct: 371 L 371 >gi|317063570|ref|ZP_07928055.1| signal recognition particle receptor FtsY [Fusobacterium ulcerans ATCC 49185] gi|313689246|gb|EFS26081.1| signal recognition particle receptor FtsY [Fusobacterium ulcerans ATCC 49185] Length = 320 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 133/307 (43%), Positives = 186/307 (60%), Gaps = 19/307 (6%) Query: 18 TKGFASTSLKLK-----EGI-----TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 +KGF TSLK K EG+ + I+ +D + EELED+LI+SDIG+ + KIV Sbjct: 17 SKGFF-TSLKDKLFKSREGLFGKLKSFILGRSVIDFEMYEELEDILIQSDIGMDMTVKIV 75 Query: 68 ---EELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 E+ + KR KD + +Y V E++ L+ + + +VILVVGVNGVG Sbjct: 76 GALEKEVKKRGIKD---PKDIYPVLKEVMEGFLIKEGNDIVIE-DGKLNVILVVGVNGVG 131 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+ K G KV+L AGDTFR+AAI+QL+ WA R+ A+ V S GSD A+ + Sbjct: 132 KTTTIGKLASKFVKDGKKVILGAGDTFRAAAIEQLEEWAKRSGAEIVKSTQGSDPGAVVF 191 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 + A+A+ D+ IIDTAGRLHN + LM + K+ ++K+ + + V+D TTGQ Sbjct: 192 DTLAAAEARGADIAIIDTAGRLHNKNNLMKELEKIHNIIKKKLGDQHYESILVIDGTTGQ 251 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 N L Q ++F+ V TG I+TK+DGTA+GG + I K P+ F+GVGE I DL F A Sbjct: 252 NGLSQAKVFNEVTDLTGFIITKLDGTAKGGIVFSISEEIKKPIKFIGVGEKIEDLRKFDA 311 Query: 304 KDFSAVI 310 K++ I Sbjct: 312 KEYIQAI 318 >gi|320547226|ref|ZP_08041519.1| cell division protein FtsY [Streptococcus equinus ATCC 9812] gi|320448114|gb|EFW88864.1| cell division protein FtsY [Streptococcus equinus ATCC 9812] Length = 440 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 131/312 (41%), Positives = 186/312 (59%), Gaps = 14/312 (4%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 E + R L K S +L T + + RR+D+ EELE++LI SD+GV VA ++ E Sbjct: 135 EEEKYNRSLKKTRTGFSARLN---TFLANFRRVDEDFFEELEEMLILSDVGVNVATQLTE 191 Query: 69 ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFSHRPHVILVVGVNGVG 123 +L RY + + D+ +I + L+ + + FN +F V+L VGVNGVG Sbjct: 192 DL---RYEAKLENAKKADDLKRVIIEKLVEIYEKDGVFNEKINFQDDLTVMLFVGVNGVG 248 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+ K + G KVML A DTFR+ A+ QL W R V +D A++ + Sbjct: 249 KTTSIGKLAYKYKNEGKKVMLVAADTFRAGAVAQLAEWGRRVGVPVVTGPEKADPASVVF 308 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 + ++A A+ VDVL+IDTAGRL N LMA + K+ R++KR+ P APH L LDA+TGQ Sbjct: 309 DGMERAVAENVDVLLIDTAGRLQNKDNLMAELEKIGRIIKRVVPDAPHETLLALDASTGQ 368 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NAL Q + F + TGLI+TK+DGTA+GG ++ I IPV F+G GE ++D+ F + Sbjct: 369 NALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKMDDIGEFDS 428 Query: 304 KDFSAVITGCLD 315 +DF I G L+ Sbjct: 429 EDF---IRGLLE 437 >gi|160903149|ref|YP_001568730.1| signal recognition particle-docking protein FtsY [Petrotoga mobilis SJ95] gi|160360793|gb|ABX32407.1| signal recognition particle-docking protein FtsY [Petrotoga mobilis SJ95] Length = 304 Score = 202 bits (515), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 127/305 (41%), Positives = 183/305 (60%), Gaps = 7/305 (2%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + K G + + + I I S + LDD V EELE++LI SD+GV V+ KI+EEL Sbjct: 1 MGIFEKFKNGLSKARNTVFKNIKTIFSGKVLDDDVLEELEEILIMSDMGVEVSHKILEEL 60 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + RY + S L + +++ + L DF +P+VIL+VGVNG GKTT K Sbjct: 61 KS-RYKSNNSHNDPLLLLRDILVENLQ--KDEVVSDFQQKPYVILIVGVNGSGKTTTAAK 117 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K S G +V+LAA DTFR+AAI+QLK W +R + + + GSDAAA+ Y+A A+ Sbjct: 118 LAKMYSKQGKEVVLAAADTFRAAAIEQLKEWGNRLNTTVIAHQKGSDAAAVVYDAITHAK 177 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 ++ DV+++DTAGRLH S LM + K+ RV++R P APH L VLD TTGQN + Q + Sbjct: 178 SRGKDVVLVDTAGRLHTKSNLMDELKKIRRVVEREVPGAPHETLLVLDGTTGQNGISQAK 237 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK--IPVYFLGVGEGINDLEPFVAKDFSA 308 F TG+++TK+DGTA+GG I + H+ IP+ +G GE +DL+ F + Sbjct: 238 AFKEAIDITGIVVTKLDGTAKGG--IAFAINHELNIPIKLVGFGEKEDDLQIFDPVSYCN 295 Query: 309 VITGC 313 + G Sbjct: 296 ALLGV 300 >gi|259046637|ref|ZP_05737038.1| signal recognition particle-docking protein FtsY [Granulicatella adiacens ATCC 49175] gi|259036802|gb|EEW38057.1| signal recognition particle-docking protein FtsY [Granulicatella adiacens ATCC 49175] Length = 334 Score = 202 bits (514), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 118/303 (38%), Positives = 173/303 (57%), Gaps = 16/303 (5%) Query: 14 IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-- 70 I K KG T + + + ++ R +D+ E+LE+ I SD+G + I + L Sbjct: 29 IEKYDKGMEKTRRSFSDRLNEFLADFREIDEDFFEDLEETFISSDVGFEMTLAITDALRD 88 Query: 71 -------LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 T K+V +++++ D+ E L L K RP V++ VGVNGVG Sbjct: 89 EVRLKNATTSGQVKEVIIEKMV-DIYEKGEDNLSVLKKA-----EGRPTVLMFVGVNGVG 142 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGK++ ++ G KV+LAAGDTFR+ AI QL++W +R V + G D +++ + Sbjct: 143 KTTTIGKIAWRLKQEGNKVLLAAGDTFRAGAIQQLEVWGERVGVPVVAGKEGGDPSSVVF 202 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A K+A+ + D L+IDTAGRL N LM + KM R++ R L VLDATTGQ Sbjct: 203 DAIKKAKEENFDYLLIDTAGRLQNKVNLMKELEKMNRIISREIETGADETLLVLDATTGQ 262 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NAL Q + F TGLI+TK+DGTA+GG ++ I IPV F+G+GE ++DL+PF Sbjct: 263 NALVQAKQFGETIDITGLILTKLDGTAKGGVILSIRHELNIPVKFIGLGEQMDDLQPFEP 322 Query: 304 KDF 306 + F Sbjct: 323 EQF 325 >gi|15606250|ref|NP_213628.1| cell division protein FtsY [Aquifex aeolicus VF5] gi|6225393|sp|O67066|FTSY_AQUAE RecName: Full=Cell division protein ftsY homolog gi|2983449|gb|AAC07030.1| cell division protein FtsY [Aquifex aeolicus VF5] Length = 461 Score = 202 bits (514), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 117/304 (38%), Positives = 187/304 (61%), Gaps = 5/304 (1%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S + KL +G T ++ G+ + R++D+ EELE++L+++D+GV A ++ E+L Sbjct: 163 SILDKLRRGLQKTKEAVEFGV--LFRGRKVDEEFFEELEEMLVKADVGVKTAVELTEKLR 220 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K++ + ++ + K L+ + V+L VGVNG GKTT IGKL Sbjct: 221 KEAIRKNIKEGEKIKELLKKELKELLKNCQGELKIPEKVGAVLLFVGVNGSGKTTTIGKL 280 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + ++ G KV+L AGDTFR+AAI+QL++WA R D V E GSD A+ YE K+A+ Sbjct: 281 AHQLKQKGKKVLLVAGDTFRAAAIEQLEVWAKRAGVDIVKKEEGSDPGAVVYEGMKKAKE 340 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +V+++DTAGRLH L+ + K+ +V+++ D P L V+DATTGQNA++Q ++ Sbjct: 341 EGYEVVLVDTAGRLHTKEPLINELRKIKKVIQKFDKEEPSETLLVIDATTGQNAIQQAKV 400 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F TG+++TK+DG+A+GG ++ I KIP+ +GVGEGI+DL+PF D A + Sbjct: 401 FKEAVDITGIVVTKLDGSAKGGAVVAICRELKIPIKLVGVGEGIDDLQPF---DADAYVE 457 Query: 312 GCLD 315 L+ Sbjct: 458 ALLE 461 >gi|323484227|ref|ZP_08089596.1| hypothetical protein HMPREF9474_01347 [Clostridium symbiosum WAL-14163] gi|323692110|ref|ZP_08106356.1| signal recognition particle-docking protein FtsY [Clostridium symbiosum WAL-14673] gi|323402469|gb|EGA94798.1| hypothetical protein HMPREF9474_01347 [Clostridium symbiosum WAL-14163] gi|323503833|gb|EGB19649.1| signal recognition particle-docking protein FtsY [Clostridium symbiosum WAL-14673] Length = 314 Score = 202 bits (514), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 124/295 (42%), Positives = 176/295 (59%), Gaps = 2/295 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L +G T + GI I S +DD EE+E+ LI D+G+ IVE+L Sbjct: 8 FFGRLVEGLTKTRNSIVSGIDSIFSGFSAIDDDFYEEIEETLIMGDLGIQTTMSIVEDLR 67 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + D+ K M L + ++F + V+LV+GVNGVGKTT +GKL Sbjct: 68 RKVKENHIKEPSECKDLLVASIKSQMDLGEN-AYEFERQKSVVLVIGVNGVGKTTSVGKL 126 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + ++ D G KV+LAA DTFR+AAI+QL W++R + + + GSD AA+ ++A A++ Sbjct: 127 AGQLKDQGKKVILAAADTFRAAAIEQLTEWSNRAGVELIAQQEGSDPAAVIFDAIAAAKS 186 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + DVLI DTAGRLHN LM + K+ R++ + P A L VLD TTGQNAL Q + Sbjct: 187 RNADVLICDTAGRLHNKKNLMEELKKINRIIDKEYPDAYRETLVVLDGTTGQNALSQAKQ 246 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F VA TG+I+TK+DGTA+GG + I IPV ++G+GE I+DL+ F A DF Sbjct: 247 FMEVADITGIILTKLDGTAKGGIAVAIQSELGIPVKYVGIGEKIDDLQKFDANDF 301 >gi|229541118|ref|ZP_04430178.1| signal recognition particle-docking protein FtsY [Bacillus coagulans 36D1] gi|229325538|gb|EEN91213.1| signal recognition particle-docking protein FtsY [Bacillus coagulans 36D1] Length = 332 Score = 202 bits (514), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 119/298 (39%), Positives = 184/298 (61%), Gaps = 10/298 (3%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K G A T + ++++ R++D+ EELE++LI++D+G ++++EL + Sbjct: 21 KFKTGLAKTRDNFSSKVNNLVARYRKIDEDFFEELEEILIQADVGFQTVMELIDELKMEV 80 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWDFSHRP-HVILVVGVNGVGKTTVI 128 K++ + +V +I + L+ + P + VIL VGVNGVGKTT I Sbjct: 81 KRKNI---KAPSEVQSVISEKLVDIYSAGEDAPNQLNIQDGALTVILFVGVNGVGKTTTI 137 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ + G KV++AAGDTFR+ AI+QL++W +R + + GSD AA+ ++A + Sbjct: 138 GKLAHMLKQQGKKVIMAAGDTFRAGAIEQLEVWGERVGVEVIKHSEGSDPAAVMFDAVQA 197 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ DVL+ DTAGRL N LM + K+ RV++R P APH VL VLDATTGQNA+ Q Sbjct: 198 AKARNADVLLCDTAGRLQNKVNLMKELEKVKRVIEREIPGAPHEVLLVLDATTGQNAMVQ 257 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F TG+++TK+DGTA+GG ++ I IPV F+G+GE ++DL+PF A+ + Sbjct: 258 AKTFKEATDVTGIVLTKLDGTAKGGIVLAIRNELHIPVKFVGLGEKMDDLQPFDAEKY 315 >gi|303231828|ref|ZP_07318542.1| signal recognition particle-docking protein FtsY [Veillonella atypica ACS-049-V-Sch6] gi|302513506|gb|EFL55534.1| signal recognition particle-docking protein FtsY [Veillonella atypica ACS-049-V-Sch6] Length = 233 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 103/199 (51%), Positives = 135/199 (67%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 H P VILVVGVNGVGKTT I KL+ + G KV++AAGDTFR+AA DQL IWADR Sbjct: 22 HHPEVILVVGVNGVGKTTTIAKLANYYTKEGKKVIIAAGDTFRAAAADQLSIWADRVGVP 81 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V + G+D AA+ Y+A + A+A+ D++I+DTAGRLH LM + KM RV Sbjct: 82 IVKHKEGADPAAVVYDAMEAAKARNADMVIVDTAGRLHTKVNLMEELKKMGRVANNHVEG 141 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 APH L VLD TTGQNA+ Q ++F G+++TK+DGTA+GG +I I +PV + Sbjct: 142 APHQTLLVLDGTTGQNAVSQAKLFGQAVPVNGIVVTKLDGTAKGGVVISIKEELGVPVRW 201 Query: 289 LGVGEGINDLEPFVAKDFS 307 +GVGEG++DL PF AK+F+ Sbjct: 202 IGVGEGMDDLRPFNAKEFA 220 >gi|160934419|ref|ZP_02081806.1| hypothetical protein CLOLEP_03292 [Clostridium leptum DSM 753] gi|156867092|gb|EDO60464.1| hypothetical protein CLOLEP_03292 [Clostridium leptum DSM 753] Length = 305 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 116/256 (45%), Positives = 166/256 (64%), Gaps = 6/256 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111 + D+G+ AQ+I EEL R +D +++ + ++ +ML + + +P Sbjct: 45 VMGDVGINTAQRICEEL-KARVKRDGVKDPNQIMGMLRNVVREML---EGDTSLHLATKP 100 Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 +ILV+GVNGVGKTT IGK+S +++ G KV++AA DTFR+AAIDQL +WADR+ AD V Sbjct: 101 SIILVIGVNGVGKTTTIGKISARLTREGKKVVIAAADTFRAAAIDQLAVWADRSGADLVK 160 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 GSD AA+ ++A A+++ DV+I DTAGRLHN LM + K+ R++ R P A Sbjct: 161 QGEGSDPAAVVFDAISAAKSRNADVIICDTAGRLHNKKNLMDELSKIGRIIDRELPEAEK 220 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 +L VLDA TGQNA+ Q F G TG+++TK+DGTARGG +I I +PV F+GV Sbjct: 221 EILLVLDAATGQNAVNQAREFKNSCGITGIVLTKLDGTARGGVVIAIKEDLNVPVKFIGV 280 Query: 292 GEGINDLEPFVAKDFS 307 GE I+DL+PF +DF+ Sbjct: 281 GEQIDDLQPFDPEDFA 296 >gi|322373361|ref|ZP_08047897.1| signal recognition particle-docking protein FtsY [Streptococcus sp. C150] gi|321278403|gb|EFX55472.1| signal recognition particle-docking protein FtsY [Streptococcus sp. C150] Length = 490 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 128/320 (40%), Positives = 189/320 (59%), Gaps = 12/320 (3%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 ++ +V +E + R L K + +L E + RR+D+ EELE++LI SD+GV Sbjct: 177 VATSQVETEQEKYDRTLKKTRTGFAARLNEFFANF---RRVDEEFFEELEEMLILSDVGV 233 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFSHRPHVIL 115 VA ++ E+L RY + + D+ LI + L+ + + +N +F V+L Sbjct: 234 NVATQLTEDL---RYEARLENVKKTEDLQRLIIEKLVDIYEKDDVYNEQINFQDGLTVML 290 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNGVGKTT IGKL+ K G KVML A DTFR+ A+ QL W R V Sbjct: 291 FVGVNGVGKTTSIGKLAHKYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVEVPVVTGAEK 350 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 +D A++ ++ ++A A+ VDVL+IDTAGRL N LMA + K+ R++KR+ P APH L Sbjct: 351 ADPASVVFDGMEKALAEDVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETLL 410 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 LDA+TGQNAL Q + F + TGLI+TK+DG+A+GG ++ I IPV +G GE I Sbjct: 411 ALDASTGQNALSQAKEFSKITPLTGLILTKLDGSAKGGVVLAIRQELDIPVKLIGFGEKI 470 Query: 296 NDLEPFVAKDF-SAVITGCL 314 +D+ F +++F ++TG + Sbjct: 471 DDIGEFHSEEFMQGLLTGLV 490 >gi|187934978|ref|YP_001885441.1| signal recognition particle-docking protein FtsY [Clostridium botulinum B str. Eklund 17B] gi|187723131|gb|ACD24352.1| signal recognition particle-docking protein FtsY [Clostridium botulinum B str. Eklund 17B] Length = 302 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 116/257 (45%), Positives = 161/257 (62%), Gaps = 6/257 (2%) Query: 56 SDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD-FSHRPHV 113 SDIG+ I+E L K R K Q V + E+I ++L+ N++ V Sbjct: 49 SDIGMDTTMDIIERLRKKIRKEKINDPQDVKPALKEVIKEILLE----GNYEEVDDEKKV 104 Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 +LV+GVNGVGKTT IGKL+ K AG KV+L A DTFR+AAIDQL++W+ R D + + Sbjct: 105 MLVIGVNGVGKTTSIGKLAAKNKRAGKKVLLIAADTFRAAAIDQLEVWSRRAEVDLIKHQ 164 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 GSD AA+ ++A + ++A+ D+LI DTAGRLHN LM + K+ R++ R Sbjct: 165 EGSDPAAVVFDAIEASKARNTDLLICDTAGRLHNKKNLMNELEKINRIIDRELDGVKKET 224 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L VLDATTGQNA+ Q + F V G+I+TK+DGTA+GG +I I + IPV ++GVGE Sbjct: 225 LLVLDATTGQNAVIQAKQFMEVCPIDGIILTKLDGTAKGGVVISIKQSLNIPVRYIGVGE 284 Query: 294 GINDLEPFVAKDFSAVI 310 GI+DL+ F A+ F+ I Sbjct: 285 GIDDLQEFDAEGFAEAI 301 >gi|188589484|ref|YP_001920588.1| signal recognition particle-docking protein FtsY [Clostridium botulinum E3 str. Alaska E43] gi|251778567|ref|ZP_04821487.1| signal recognition particle-docking protein FtsY [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499765|gb|ACD52901.1| signal recognition particle-docking protein FtsY [Clostridium botulinum E3 str. Alaska E43] gi|243082882|gb|EES48772.1| signal recognition particle-docking protein FtsY [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 302 Score = 202 bits (513), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 116/256 (45%), Positives = 160/256 (62%), Gaps = 4/256 (1%) Query: 56 SDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114 SDIG+ I+E L K R K Q V + E+I ++L+ + N D V+ Sbjct: 49 SDIGMDTTMDIIERLRKKIRKEKINDPQDVKPALKEVIKEILLEGNYEDNDD---EKKVM 105 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 LV+GVNGVGKTT IGKL+ K AG KV+L A DTFR+AAIDQL++W+ R D + + Sbjct: 106 LVIGVNGVGKTTSIGKLAAKNKRAGKKVLLIAADTFRAAAIDQLEVWSRRAEVDLIKHQE 165 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 GSD AA+ ++A + ++A+ D+LI DTAGRLHN LM + K+ R++ R L Sbjct: 166 GSDPAAVVFDAIEASKARNTDLLICDTAGRLHNKKNLMNELEKINRIIDRELDGVKKETL 225 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VLDATTGQNA+ Q + F V G+I+TK+DGTA+GG +I I + IPV ++GVGE Sbjct: 226 LVLDATTGQNAVIQAKQFMEVCPIDGIILTKLDGTAKGGVVISIKQSLNIPVRYIGVGEC 285 Query: 295 INDLEPFVAKDFSAVI 310 I+DL+ F A+ F+ I Sbjct: 286 IDDLQEFDAESFAEAI 301 >gi|320108301|ref|YP_004183891.1| signal recognition particle-docking protein FtsY [Terriglobus saanensis SP1PR4] gi|319926822|gb|ADV83897.1| signal recognition particle-docking protein FtsY [Terriglobus saanensis SP1PR4] Length = 376 Score = 202 bits (513), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 115/303 (37%), Positives = 177/303 (58%), Gaps = 11/303 (3%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 S + ++ + T L GI +++ +R +D +ELE +LI SDIGV AQ+I+ Sbjct: 72 SSGFFARMRQAVTRTRESLNSGIDSVLALTREVDTATLDELEAVLITSDIGVDTAQEIIA 131 Query: 69 ELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 L + + + + + ++ ++++ + P+++ + P VI++VGVNG G Sbjct: 132 TLRQRALREGIDGGPELKRLLKLELLKILNSVRSPVARA-----ATPPEVIMMVGVNGTG 186 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT GKL+ +L A DTFR+AAI+QL++WA R+ D V ++ G D +A Y Sbjct: 187 KTTTSGKLAALFRAQHRTALLCAADTFRAAAIEQLEVWAQRSGVDIVKTKQGGDPSAALY 246 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A +A+KVDV+IIDTAGRLH S LM + KM R ++ P APH V+DATTGQ Sbjct: 247 DALNAGKARKVDVVIIDTAGRLHTKSGLMTELDKMRRTAAKVIPDAPHQTFLVMDATTGQ 306 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 N ++Q +F A TG+++TK+DGTA+GG +I I +PV + G+GE + DL F A Sbjct: 307 NGMQQARLFTEAAQVTGIVLTKLDGTAKGGIVIAIARELGLPVVYCGIGEKMEDLIAFDA 366 Query: 304 KDF 306 F Sbjct: 367 DAF 369 >gi|195645948|gb|ACG42442.1| cell division protein ftsY [Zea mays] Length = 362 Score = 202 bits (513), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 188/306 (61%), Gaps = 10/306 (3%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVR--EELEDLLIRSDIGVAVAQKIVEE 69 S + KL GF+ T L + ++++ L D R ++LE+ L+ SD G ++ +IV+ Sbjct: 58 SDVEKLFSGFSKTRENLSV-VDELLTYWNLADTDRVLDDLEEALLVSDFGPKISFRIVDT 116 Query: 70 LLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKT 125 L + R K S + + I ++L SK N + + +P VI++VGVNG GKT Sbjct: 117 LREEIRDGKLKSCAEIKAALKRCILELLT--SKGGNSELNLGFRKPAVIMIVGVNGGGKT 174 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SEIGSDAAALAYE 184 T +GKL+ + + G+KV++AAGDTFR+AA DQL++WA+RT ++ V ++ + A+ + Sbjct: 175 TSLGKLAYRFKNEGVKVLMAAGDTFRAAARDQLEVWAERTGSEIVIDNDKKAQPPAVLSQ 234 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A K+ + + DV++ DT+GRLH N LM + +VL + P AP+ +L VLD TTG N Sbjct: 235 AVKRGKREGFDVVLCDTSGRLHTNYGLMEELVSCKKVLAKALPGAPNEILLVLDGTTGLN 294 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 L+Q F+ V G TG I+TK+DGTARGG ++ +V IPV F+GVGEG+ DL+PF A+ Sbjct: 295 MLQQAREFNDVVGVTGFILTKLDGTARGGCVVSVVDELGIPVKFIGVGEGMEDLQPFDAE 354 Query: 305 DFSAVI 310 F I Sbjct: 355 AFVEAI 360 >gi|110597634|ref|ZP_01385919.1| signal recognition particle-docking protein FtsY [Chlorobium ferrooxidans DSM 13031] gi|110340754|gb|EAT59231.1| signal recognition particle-docking protein FtsY [Chlorobium ferrooxidans DSM 13031] Length = 317 Score = 202 bits (513), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 121/305 (39%), Positives = 184/305 (60%), Gaps = 6/305 (1%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV----AVAQKIVE 68 + KLT+G T L++ ++ I + +D+ EELE +L+ +D+GV + I E Sbjct: 9 LSKLTEGLGKTRDTLRDKLSVITQGKTEIDEEFLEELETILVAADVGVETTLGIVDAITE 68 Query: 69 ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 + Y + + +L + + +L+ + + F+ +P+VIL+VGVNG GKTT Sbjct: 69 RAKQETYRSETELNNMLMEEIQQLLQESGVDHPVDFDAPLPAKPYVILIVGVNGAGKTTS 128 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 + KL+ AG KV++AA DTFR+AA +QL+IWADR + GSD A++ Y+A Sbjct: 129 VAKLAHNYDKAGKKVIIAAADTFRAAAYEQLQIWADRAGVPMLGQAQGSDPASVVYDAVS 188 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A A+ DV+++DTAGRLHN S LM + K++RV K+ P APH VL VLD TTGQNA++ Sbjct: 189 AAVARNADVVLVDTAGRLHNKSHLMEELAKIMRVAKKKIPEAPHEVLLVLDGTTGQNAVQ 248 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 Q F TGL++TK+DGT++GG ++ I +PV ++GVGE I+DL+ F +F Sbjct: 249 QAREFTKFVKVTGLVVTKLDGTSKGGIVLSISRELGLPVKYIGVGEKIDDLQLFDRAEFV 308 Query: 308 AVITG 312 + G Sbjct: 309 GALLG 313 >gi|300727622|ref|ZP_07061011.1| signal recognition particle-docking protein FtsY [Prevotella bryantii B14] gi|299775142|gb|EFI71745.1| signal recognition particle-docking protein FtsY [Prevotella bryantii B14] Length = 318 Score = 202 bits (513), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 115/261 (44%), Positives = 165/261 (63%), Gaps = 7/261 (2%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMPLSKP--FNWDF 107 +LI SD+GV KI+E + KR +D VS + + E I +L + NWD Sbjct: 51 ILITSDVGVETTVKIIERI-EKRVERDKYVSTSELNQILREEIASLLAENNSDDNSNWDL 109 Query: 108 --SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 H+P+VILVVGVNGVGKTT IGKL+ + +AG KV L A DTFR+AA++Q+ IW +R Sbjct: 110 PSDHKPYVILVVGVNGVGKTTTIGKLAYQFKNAGKKVYLGAADTFRAAAVEQICIWGERV 169 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + GSD A++A++ + A+A DV++IDTAGRLHN LM + K+ V+K++ Sbjct: 170 GVPVIKQQQGSDPASVAFDTLQSAKANGADVVLIDTAGRLHNKIGLMNELKKVKEVMKKV 229 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P AP ++ VLD +TGQNA Q + F V T L +TK+DGTA+GG +I I K+P Sbjct: 230 LPDAPDEIMLVLDGSTGQNAFEQAKQFSKVTEITSLAITKLDGTAKGGVVIGISDQLKVP 289 Query: 286 VYFLGVGEGINDLEPFVAKDF 306 V ++G+GEG+ D++ F +F Sbjct: 290 VKYIGLGEGMEDMQLFNKTEF 310 >gi|333030362|ref|ZP_08458423.1| signal recognition particle-docking protein FtsY [Bacteroides coprosuis DSM 18011] gi|332740959|gb|EGJ71441.1| signal recognition particle-docking protein FtsY [Bacteroides coprosuis DSM 18011] Length = 317 Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 113/258 (43%), Positives = 161/258 (62%), Gaps = 6/258 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMP-LSKPFNWDFSHR 110 I SD+GV KI+E + R +KD V+ + + + E I +L+ + +D R Sbjct: 53 ITSDVGVDTTLKIIERI-ENRVSKDKYVNTKELNAILREEIASLLIENKASDAAFDLPQR 111 Query: 111 --PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P+VI+VVGVNGVGKTT IGK++ K AG V L A DTFR+AA++QL+IW +R Sbjct: 112 DTPYVIMVVGVNGVGKTTTIGKIAAKFKAAGKSVYLGAADTFRAAAVEQLEIWGERVGVP 171 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + ++GSD A++A++ A A DV+IIDTAGRLHN LM + K+ V+K++ P Sbjct: 172 VIKQKMGSDPASVAFDTLSSAVANHADVVIIDTAGRLHNKINLMNELTKIKNVMKKIIPD 231 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 AP VL VLD +TGQNA Q + F L +TK+DGTA+GG +I I +IPV + Sbjct: 232 APSEVLLVLDGSTGQNAFEQAKQFTLATEVNSLAITKLDGTAKGGVVIGISDQFQIPVKY 291 Query: 289 LGVGEGINDLEPFVAKDF 306 +G+GEGI+DL+ F ++F Sbjct: 292 IGLGEGIDDLQVFNKEEF 309 >gi|259503529|ref|ZP_05746431.1| signal recognition particle-docking protein FtsY [Lactobacillus antri DSM 16041] gi|259168607|gb|EEW53102.1| signal recognition particle-docking protein FtsY [Lactobacillus antri DSM 16041] Length = 447 Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 111/261 (42%), Positives = 159/261 (60%), Gaps = 8/261 (3%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML---MPLSKPFNWDF- 107 +LI SD+G +A K+ + L + ++ ++ + +V +I KM+ + N D Sbjct: 177 MLIESDVGYDMAMKLSDSLREEVKLENAKSKQEVSNV--IIEKMVDLYEEAGRNENPDLQ 234 Query: 108 --SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + P VI+ VGVNG GKTT IGK++ G KV+LAA DTFR+ A +QL +WA R Sbjct: 235 MAAQGPTVIMFVGVNGAGKTTTIGKMAALFKRQGKKVLLAAADTFRAGATEQLDVWAQRD 294 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 D V D AA+ ++A ++A+ + DVL +DTAGRL N LM + KM R+L R Sbjct: 295 GVDIVTGPENGDPAAVVFDAVQKAKREDYDVLFVDTAGRLQNKVNLMNELAKMKRILTRE 354 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P APH VL VLDATTGQNAL Q ++F TG+++TK+DGTARGG ++ I +P Sbjct: 355 IPDAPHEVLLVLDATTGQNALNQAKLFKQSTDVTGIVLTKLDGTARGGIVLAIRNELHLP 414 Query: 286 VYFLGVGEGINDLEPFVAKDF 306 V ++G+GE ++DL+ F A DF Sbjct: 415 VKYVGLGEKVDDLQKFNASDF 435 >gi|17229251|ref|NP_485799.1| cell division protein [Nostoc sp. PCC 7120] gi|17130849|dbj|BAB73458.1| cell division protein [Nostoc sp. PCC 7120] Length = 546 Score = 201 bits (512), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 107/315 (33%), Positives = 182/315 (57%), Gaps = 6/315 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + ++ E ++W++KL +G T + + I+ L+ E+E LL+++D+GV Sbjct: 232 EDISIEEITWLKKLRQGLDKTRRNILNQLKAIVGQGPLNQAAVGEIEALLLQADVGVEAT 291 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVVGV 119 I+ L K + + + + +++ ML PL F+ ++ L+ GV Sbjct: 292 DYIISSLQKKLREEITPPEEAIAYLKQILRDMLDAPLKTSHKASFAPEKDSLNIWLITGV 351 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178 NG GKTT IGK+S +G + ++ A DTFR+AA++Q+K+W R+ + + + +D Sbjct: 352 NGAGKTTTIGKISHLAQQSGYRCLIGAADTFRAAAVEQVKVWGKRSGVEVISNPGKNTDP 411 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A AQA+ ++L++DTAGRL N LM + K+ R++ + P A L VLD Sbjct: 412 AAVVFDAIAAAQARNTELLLVDTAGRLQNKKNLMDELSKIRRIIDKKAPDAKIESLLVLD 471 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 +T GQN LRQ E+F A +G+++TK+DGTA+GG + +V +P+ F+G GEGI DL Sbjct: 472 STLGQNGLRQAEVFSQAAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGAGEGIEDL 531 Query: 299 EPFVAKDF-SAVITG 312 PF + +F A+++G Sbjct: 532 RPFSSYEFVEALLSG 546 >gi|315924203|ref|ZP_07920429.1| cell division protein FtsY [Pseudoramibacter alactolyticus ATCC 23263] gi|315622605|gb|EFV02560.1| cell division protein FtsY [Pseudoramibacter alactolyticus ATCC 23263] Length = 305 Score = 201 bits (512), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 124/311 (39%), Positives = 185/311 (59%), Gaps = 14/311 (4%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S +++ A T E I + + LD+ +ELE+ LI SD+ + ++ I+++L Sbjct: 3 SLYQRMKDKLAGTKKNFSEKINRALYYKNLDENFFDELEESLILSDMSIETSEAIIDQLQ 62 Query: 72 TKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + K + + VL + ++ +M+ + P P V+LVVGVNGVGKTT I K Sbjct: 63 KEIKQKGIKKSEEVLGLLESIMTEMVTVTAAPMQM-----PAVMLVVGVNGVGKTTTIAK 117 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+++ + G VMLAA DTFR+AA +QL+ WA+R D + S G+D A++ Y+A A Sbjct: 118 LAQRYKNEGKTVMLAAADTFRAAAAEQLEAWAERIGVDIIASASGADPASVVYDALHAAH 177 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR----LDPHAPHSVLQVLDATTGQNAL 246 ++ DVLI DTAGRLHN LM + K+ R++ R D H L V+DATTGQNAL Sbjct: 178 SRHADVLICDTAGRLHNKVNLMNELEKLSRIIDREGQGFDVHN----LLVVDATTGQNAL 233 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q F+ +G++MTKMDGTA+GG +IP++ KIPV ++G+GEG +DL PF A++F Sbjct: 234 TQARTFNEAVHLSGIVMTKMDGTAKGGVVIPMINELKIPVEYVGLGEGADDLVPFDAREF 293 Query: 307 SAVITGCLDYG 317 ++ D G Sbjct: 294 VKLLYDTSDSG 304 >gi|313890272|ref|ZP_07823906.1| signal recognition particle-docking protein FtsY [Streptococcus pseudoporcinus SPIN 20026] gi|313121377|gb|EFR44482.1| signal recognition particle-docking protein FtsY [Streptococcus pseudoporcinus SPIN 20026] Length = 494 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 124/297 (41%), Positives = 180/297 (60%), Gaps = 12/297 (4%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 ++K GFAS +L + RR+D+ EELE++LI SD+GV VA + ++L + Sbjct: 197 LKKTRSGFAS---RLNAFFANF---RRVDEEFFEELEEMLILSDVGVTVATTLTDQLRQE 250 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVIG 129 ++ VL V +I K++ K N ++ ++ V+L VGVNGVGKTT IG Sbjct: 251 AKLENAKKPEVLRRV--IIEKLVAIYEKDGIYGENINYQNKLTVMLFVGVNGVGKTTSIG 308 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KVML A DTFR+ A+ QL W R V +D A++ ++ ++A Sbjct: 309 KLAYRYKSEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGSEKADPASVVFDGVEKA 368 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A++VD+L+IDTAGRL N LMA + KM R++KR+ P APH L LDA+TGQNAL Q Sbjct: 369 VAQEVDILLIDTAGRLQNKENLMAELEKMGRIIKRVIPDAPHETLLALDASTGQNALSQA 428 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F + TGLI+TK+DGTA+GG ++ I IPV F+G GE I+D+ F +++F Sbjct: 429 KEFSKIMPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIGEFDSEEF 485 >gi|325846665|ref|ZP_08169580.1| signal recognition particle-docking protein FtsY [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481423|gb|EGC84464.1| signal recognition particle-docking protein FtsY [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 368 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 126/307 (41%), Positives = 187/307 (60%), Gaps = 15/307 (4%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIV 67 E L + KL+KG T + + ++ ++ ++DD + +ELE++LI +DIG+ +IV Sbjct: 62 EELGFFEKLSKGLTKTREQFSSKLKNLFTANVKIDDDLYDELEEILISADIGMQSTIEIV 121 Query: 68 EELLTKRYAKDVSVQRVLYDVSE---LIHKMLMPLSKPFNWDF-----SHRPHVILVVGV 119 +EL KD +R + + + L+ +++ N D + + VILV+GV Sbjct: 122 DEL------KDKIKERSIKNADQIFPLLKEIMEDKLDEKNLDNELLISNDKLSVILVIGV 175 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+ + G KV LAA DTFR+AAI+QL WA ++ + + GSD + Sbjct: 176 NGVGKTTTIGKLAHNLKKEGHKVTLAAADTFRAAAIEQLDSWAKESNTQMIAHKEGSDPS 235 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ ++A + A+A DVLI DTAGRLHN LM + K+ R + +A L VLDA Sbjct: 236 AVIFDAIQAAKANGSDVLICDTAGRLHNKKNLMNELEKINRTISTHANNANRENLLVLDA 295 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNA+ Q+ F V TGLI+TK+DGTA+GG + P+ V ++PV ++GVGEGI++LE Sbjct: 296 TTGQNAISQLREFKNVCDITGLILTKLDGTAKGGVIFPLQVELEVPVKYIGVGEGIDNLE 355 Query: 300 PFVAKDF 306 F +K F Sbjct: 356 KFDSKSF 362 >gi|332523258|ref|ZP_08399510.1| signal recognition particle-docking protein FtsY [Streptococcus porcinus str. Jelinkova 176] gi|332314522|gb|EGJ27507.1| signal recognition particle-docking protein FtsY [Streptococcus porcinus str. Jelinkova 176] Length = 499 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 128/317 (40%), Positives = 187/317 (58%), Gaps = 15/317 (4%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 SNQ+ SL +K GFAS +L + + R +D+ EELE++LI SD+GV Sbjct: 193 SNQEKYDRSL---KKTRSGFAS---RLNAFLANF---RSVDEEFFEELEEMLILSDVGVT 243 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVILVV 117 VA + ++L + ++ VL V +I K++ K N++ + + V+L V Sbjct: 244 VATTLTDQLRQEAKLENAKKPEVLRRV--IIEKLVAIYEKDGNYNEKINYQNNLTVMLFV 301 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 GVNGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R V +D Sbjct: 302 GVNGVGKTTSIGKLAYRYKSEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGSEKAD 361 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 A++ ++ ++A A+ +D+L+IDTAGRL N LMA + KM R++KR+ P APH L L Sbjct: 362 PASVVFDGVEKAVAENIDILLIDTAGRLQNKENLMAELEKMGRIIKRVIPDAPHETLLAL 421 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA+TGQNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV F+G GE I+D Sbjct: 422 DASTGQNALSQAKEFSKIMPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDD 481 Query: 298 LEPFVAKDFSAVITGCL 314 + F +++F + G + Sbjct: 482 IGEFDSEEFMKGLLGNM 498 >gi|154500959|ref|ZP_02038997.1| hypothetical protein BACCAP_04645 [Bacteroides capillosus ATCC 29799] gi|150269983|gb|EDM97502.1| hypothetical protein BACCAP_04645 [Bacteroides capillosus ATCC 29799] Length = 299 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 128/304 (42%), Positives = 183/304 (60%), Gaps = 18/304 (5%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + + K+ G T + + D + + LDD +ELE+ LI D+G+ K V EL Sbjct: 1 MGFFDKIKAGLTRTKENIGHSL-DSLFAGELDDDFYDELEETLILGDMGMDTTIKAVAEL 59 Query: 71 LTKRYAKDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + A+ + ++RVL D+ + L D S P VILV+GVNGV Sbjct: 60 RRRVKAEKIKDTEGARECLRRVLTDMLNVGDCAL---------DLSASPAVILVIGVNGV 110 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL ++ G KV+LAA DTFR+AA DQL+IW+ R+ + V G+D AA+ Sbjct: 111 GKTTTIGKLGARLKGEGKKVLLAAADTFRAAAADQLEIWSQRSEVELVRQHEGADPAAVV 170 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+A+K DV+++DTAGRLHN LM + K+ RV+ R P + L VLDATTG Sbjct: 171 FDAMQAAKARKTDVVLVDTAGRLHNKQNLMNELNKIGRVIDRELPGSRTETLLVLDATTG 230 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QN L Q + F AG TG+++TK+DG+A+GG +I I ++PV ++GVGEGI+DL PF Sbjct: 231 QNGLIQAKQFMEAAGITGIVLTKLDGSAKGGVVIAIADALQVPVKYIGVGEGIDDLMPFD 290 Query: 303 AKDF 306 A+ F Sbjct: 291 AEYF 294 >gi|312869989|ref|ZP_07730128.1| signal recognition particle-docking protein FtsY [Lactobacillus oris PB013-T2-3] gi|311094574|gb|EFQ52879.1| signal recognition particle-docking protein FtsY [Lactobacillus oris PB013-T2-3] Length = 461 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 112/261 (42%), Positives = 160/261 (61%), Gaps = 8/261 (3%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML---MPLSKPFNWDF- 107 +LI SD+G +A K+ + L + ++ ++ + +V +I KM+ + N D Sbjct: 191 MLIESDVGYDMAMKLSDSLREEVKLENAKSKQEVSNV--IIEKMVDLYEEAGQGENPDLR 248 Query: 108 --SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + P VI+ VGVNG GKTT IGK++ G KV+LAA DTFR+ A +QL +WA R Sbjct: 249 MAAEGPTVIMFVGVNGAGKTTTIGKMAALFKRQGKKVLLAAADTFRAGATEQLDVWAQRD 308 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 D V D AA+ ++A ++A+ + DVL +DTAGRL N LM + KM R+L R Sbjct: 309 GVDIVTGPENGDPAAVVFDAVQKAKREDYDVLFVDTAGRLQNKVNLMNELAKMKRILTRE 368 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P APH VL VLDATTGQNAL QV++F TG+++TK+DGTARGG ++ I +P Sbjct: 369 IPDAPHEVLLVLDATTGQNALNQVKLFKQSTDVTGIVLTKLDGTARGGIVLAIRNELHLP 428 Query: 286 VYFLGVGEGINDLEPFVAKDF 306 V ++G+GE ++DL+ F A DF Sbjct: 429 VKYVGLGEKVDDLQKFNASDF 449 >gi|302670931|ref|YP_003830891.1| signal recognition particle-docking protein FtsY [Butyrivibrio proteoclasticus B316] gi|302395404|gb|ADL34309.1| signal recognition particle-docking protein FtsY [Butyrivibrio proteoclasticus B316] Length = 304 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 122/300 (40%), Positives = 179/300 (59%), Gaps = 12/300 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + KL +G + T + +GI ++ S +DD EELE+ LI DIG+ KI++EL Sbjct: 5 FFSKLQQGLSKTRDSIAKGIDNVFSGYSNIDDDFYEELEETLIMGDIGINATSKIMDELR 64 Query: 72 TK---RYAKDVSV--QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 ++ R+ KD Q ++ D+ +H + +DF + VI V+GVNGVGKTT Sbjct: 65 SQVKDRHIKDPQECKQLLIEDIRNQMH------TDENAYDFEDKKTVIFVIGVNGVGKTT 118 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 +GKL+ G KV++AA DT+R+AA +QL+ WADR V G+D A++ Y+A Sbjct: 119 SVGKLASIYKKKGKKVLIAAADTYRAAATEQLQSWADRAGTPIVSGREGADPASVIYDAV 178 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 +A+ +D+LI+DTAGRLHN LM + KM R++ + + VLD TTGQNAL Sbjct: 179 GAFKARDIDILIVDTAGRLHNKKNLMEELAKMNRIIDKELGNVCRENFIVLDGTTGQNAL 238 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q F A TG+++TK+DGTA+GG + IV IPV ++GVGEG++DLE F + +F Sbjct: 239 NQAREFGEAAQLTGIVLTKLDGTAKGGIAVAIVSELNIPVKYIGVGEGLDDLERFNSDEF 298 >gi|162447213|ref|YP_001620345.1| signal recognition particle GTPase [Acholeplasma laidlawii PG-8A] gi|161985320|gb|ABX80969.1| signal recognition particle GTPase [Acholeplasma laidlawii PG-8A] Length = 318 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 111/276 (40%), Positives = 166/276 (60%), Gaps = 9/276 (3%) Query: 37 SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96 S ++D + + +EDLLI +DIGV EL + K D+SE I L Sbjct: 37 ESDTINDDLFDAIEDLLISADIGVDTVLHFTNELRNEVINKQFENPS---DLSETIVDKL 93 Query: 97 MP--LSKPF---NWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 L F F+ +V L VGVNGVGKTT IGKL+K+ D G KV++ AGDTF Sbjct: 94 FEIYLKDEFVDTTLSFTEGEVNVFLFVGVNGVGKTTTIGKLAKQYKDQGKKVLMVAGDTF 153 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R+ AI+QL W+ R DF + GSD +++ +EA ++A+ + D++++DTAGRL N Sbjct: 154 RAGAIEQLYEWSKRAKVDFYQKDAGSDPSSVIFEALEKAKKETYDLVLVDTAGRLQNKVN 213 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + KM RV+++ P P L V+DATTGQN + Q ++F+ TG+++TK+DGTA Sbjct: 214 LMNELSKMKRVIEKALPSQPAETLLVIDATTGQNGMNQAKVFNEATDLTGIVLTKLDGTA 273 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +GG ++ I + +P+ ++G+GE I+DL PF +D+ Sbjct: 274 KGGIVLAIRHLYNLPIKYVGLGEKIDDLVPFDIEDY 309 >gi|311108734|ref|YP_003981587.1| signal recognition particle-docking protein FtsY [Achromobacter xylosoxidans A8] gi|310763423|gb|ADP18872.1| signal recognition particle-docking protein FtsY [Achromobacter xylosoxidans A8] Length = 296 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 114/286 (39%), Positives = 171/286 (59%), Gaps = 7/286 (2%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDV 88 + I I ++D+ + EELE LI +D G+ +K++ L + + + +V + Sbjct: 10 QSIGGIFVGVKVDENLFEELESALIMADAGLEATEKLLTALRARVKKERIEDPAKVKTAL 69 Query: 89 SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 +L+ L PL + F+ + P V+++ GVNG GKTT IGKL+ G V+LAAGD Sbjct: 70 RQLLADHLRPLERAFDLKRTQ-PLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGD 128 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+AA +QL W R + V S+ G D AA+A++A +A+ + V+++DTAGRL Sbjct: 129 TFRAAAREQLIEWGSRNNVT-VISQDGGDPAAVAFDAVNAGRARGMGVVMVDTAGRLPTQ 187 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM + K+ RV+ + D APH VL V+D TGQNAL Q+ F A TGL++TK+DG Sbjct: 188 LHLMEELKKIRRVIGKADAAAPHEVLLVVDGNTGQNALAQIRAFDAAINLTGLVVTKLDG 247 Query: 269 TARGGGLIPIVVTHK----IPVYFLGVGEGINDLEPFVAKDFSAVI 310 TA+GG L + + IPVY++GVGE + DL+PFVA +F+ + Sbjct: 248 TAKGGTLAAVAAGSQGVRPIPVYWIGVGESLEDLQPFVADEFAGAL 293 >gi|227432059|ref|ZP_03914073.1| signal recognition particle-docking protein FtsY [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352176|gb|EEJ42388.1| signal recognition particle-docking protein FtsY [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 408 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 114/275 (41%), Positives = 166/275 (60%), Gaps = 9/275 (3%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-- 96 R +D+ E+LE+ L+ +D+G +A KI +EL + K+ + + DV +I KM+ Sbjct: 125 RSVDENFFEDLEETLVGADVGFDMAIKISDELREEVKLKNAKRKEDVRDV--IIKKMVDL 182 Query: 97 -----MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 + N+ + VIL VGVNGVGKTT IGKL+ K AG V+LAA DTFR Sbjct: 183 YEADGINEDATMNFAPKGQTTVILFVGVNGVGKTTTIGKLASKYQKAGKSVLLAAADTFR 242 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 + A QL+ W + V + +D A++ + A ++A+ + DVL IDTAGRL NN L Sbjct: 243 AGATKQLQEWGECAYVPVVAGKEKADPASVVFAAVEKARDENYDVLFIDTAGRLQNNVNL 302 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M + KM R+++R P APH VL VLDATTGQNAL+Q ++F + +G+++TKMDGTA+ Sbjct: 303 MQELEKMKRIIQREIPEAPHEVLLVLDATTGQNALQQAKLFKNSSDVSGIVLTKMDGTAK 362 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 GG + I +PV ++G GE +DL F ++F Sbjct: 363 GGIVFSIRNEMHLPVKWIGFGEKASDLREFNPEEF 397 >gi|312863726|ref|ZP_07723964.1| signal recognition particle-docking protein FtsY [Streptococcus vestibularis F0396] gi|311101262|gb|EFQ59467.1| signal recognition particle-docking protein FtsY [Streptococcus vestibularis F0396] Length = 434 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 127/319 (39%), Positives = 186/319 (58%), Gaps = 18/319 (5%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 K +E + R L K + +L E + RR+D+ EELE++LI SD+GV VA Sbjct: 125 KTETEQEKYNRTLKKTRTGFAARLNEFFANF---RRVDEEFFEELEEMLILSDVGVNVAT 181 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH--------VILV 116 ++ E+L RY + + D+ LI + L+ + + D ++ H V+L Sbjct: 182 QLTEDL---RYEARLENVKKTEDLQRLIIEKLVDI---YEKDDVYKEHINFQDGLTVMLF 235 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGKL+ K G KVML A DTFR+ A+ QL W R V + Sbjct: 236 VGVNGVGKTTSIGKLAHKYKQEGKKVMLVAADTFRAGAVAQLVEWGHRVDVPVVTGAEKA 295 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D A++ ++ ++A A+ VDVL+IDTAGRL N LMA + K+ R++KR+ P APH L Sbjct: 296 DPASVVFDGMEKALAEGVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETLLA 355 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDA+TGQNAL Q + F + TGL++TK+DG+A+GG ++ I IPV +G GE I+ Sbjct: 356 LDASTGQNALSQAKEFSKITPLTGLVLTKLDGSAKGGVVLAIRQELDIPVKLIGFGEKID 415 Query: 297 DLEPFVAKDF-SAVITGCL 314 D+ F +++F ++TG + Sbjct: 416 DIGEFHSEEFMQGLLTGLV 434 >gi|89098683|ref|ZP_01171565.1| recognition particle-docking protein FtsY [Bacillus sp. NRRL B-14911] gi|89086645|gb|EAR65764.1| recognition particle-docking protein FtsY [Bacillus sp. NRRL B-14911] Length = 329 Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 120/307 (39%), Positives = 185/307 (60%), Gaps = 6/307 (1%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63 K+ ++ + K G T + D+++ R++D+ EELE++LI++D+G Sbjct: 10 KITKQTDTVTEKFKDGLTKTRDNFSGKVNDLVARYRKVDEDFFEELEEILIQADVGFDTV 69 Query: 64 QKIVEELLTKRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 ++VEEL + K++ VQ ++ + I++ S N VIL VGV Sbjct: 70 MELVEELRMEVKRKNIQDPQGVQSIISEKLVEIYEGSGEASSALNIQ-EGDLTVILFVGV 128 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+ K G KV++AAGDTFR+ AI+QL++W DR + + GSD A Sbjct: 129 NGVGKTTSIGKLAHKFKSEGKKVLMAAGDTFRAGAIEQLEVWGDRVGVEVIKQAEGSDPA 188 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ ++A + A+++ D+L+ DTAGRL N LM + K+ RV++R P APH VL LDA Sbjct: 189 AVMFDAVRAAKSRNADILLCDTAGRLQNKVNLMKELEKVKRVIEREIPGAPHEVLLALDA 248 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNA+ Q + F +G+++TK+DGTA+GG ++ I IPV F+G+GE ++DL+ Sbjct: 249 TTGQNAMIQAKTFKEATDVSGIVLTKLDGTAKGGIVLAIRKELDIPVKFVGLGEKMDDLQ 308 Query: 300 PFVAKDF 306 F A+ + Sbjct: 309 EFDAERY 315 >gi|75906502|ref|YP_320798.1| signal recognition particle-docking protein FtsY [Anabaena variabilis ATCC 29413] gi|75700227|gb|ABA19903.1| signal recognition particle-docking protein FtsY [Anabaena variabilis ATCC 29413] Length = 546 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 107/315 (33%), Positives = 182/315 (57%), Gaps = 6/315 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + ++ E ++W++KL +G T + + I+ L+ E+E LL+++D+GV Sbjct: 232 EDISIEEITWLKKLRQGLDKTRRSILNQLKAIVGQGPLNQAAVGEIEALLLQADVGVEAT 291 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVVGV 119 I+ L K + + + + +++ ML PL F+ ++ L+ GV Sbjct: 292 DYIISSLQKKLREEVTPPEEAIAYLKQILRDMLDAPLKTSHKASFAPDKDSLNIWLITGV 351 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178 NG GKTT IGK+S +G + ++ A DTFR+AA++Q+K+W R+ + + + +D Sbjct: 352 NGAGKTTTIGKISHLAKQSGYRCLIGAADTFRAAAVEQVKVWGKRSGVEVISNPGKNTDP 411 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A AQA+ ++L++DTAGRL N LM + K+ R++ + P A L VLD Sbjct: 412 AAVVFDAIAAAQARNTELLLVDTAGRLQNKKNLMDELSKIRRIIDKKAPDAKIESLLVLD 471 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 +T GQN LRQ E+F A +G+++TK+DGTA+GG + +V +P+ F+G GEGI DL Sbjct: 472 STLGQNGLRQAEVFSQAAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGAGEGIEDL 531 Query: 299 EPFVAKDF-SAVITG 312 PF + +F A+++G Sbjct: 532 RPFSSYEFVEALLSG 546 >gi|311029998|ref|ZP_07708088.1| signal recognition particle-docking protein FtsY [Bacillus sp. m3-13] Length = 332 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 132/308 (42%), Positives = 196/308 (63%), Gaps = 6/308 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62 +K+ +++ S K +G T + D+++ R++D+ EELE++LI +D+GV Sbjct: 9 EKLTTQTDSVTEKFREGLTKTRDSFSGKVNDLVARYRKVDEDFFEELEEILIGADVGVNT 68 Query: 63 AQKIVEEL---LTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118 ++++EL + +R +D VQ V+ + I++ +S N+ V+LVVG Sbjct: 69 VMELIDELRMEVKRRNIQDPREVQSVISEKLVEIYQAGEDVSPTINFQ-QDGLTVVLVVG 127 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNGVGKTT IGK++KK+ G V+LAAGDTFR+ AIDQL++W +R D + GSD Sbjct: 128 VNGVGKTTSIGKIAKKLKQEGKSVLLAAGDTFRAGAIDQLEVWGERVGVDVIKQSEGSDP 187 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ Y+A + A+A+KVDVL+ DTAGRL N LM + K+ RV++R P APH VL VLD Sbjct: 188 AAVMYDALQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVLD 247 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 ATTGQNAL Q ++F TG+++TK+DGTA+GG ++ I KIPV F+G+GE DL Sbjct: 248 ATTGQNALSQAKIFSEATNVTGIVLTKLDGTAKGGIVLAIRNEMKIPVKFVGLGEKAEDL 307 Query: 299 EPFVAKDF 306 + F A+ + Sbjct: 308 QEFNAEQY 315 >gi|300172912|ref|YP_003772077.1| cell division protein [Leuconostoc gasicomitatum LMG 18811] gi|299887290|emb|CBL91258.1| Cell division protein [Leuconostoc gasicomitatum LMG 18811] Length = 388 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 122/299 (40%), Positives = 178/299 (59%), Gaps = 14/299 (4%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 + K GFA+ K + + R +D+ E+LE+ L+ +D+G +A KI ++L + Sbjct: 88 LEKSRTGFAARFNKF------LANFRSVDEDFFEDLEETLVGADVGFDMAIKISDDLREE 141 Query: 74 RYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHV-----ILVVGVNGVGKTTV 127 ++V + DV +I KM+ M + N D + +V IL+VGVNGVGKTT Sbjct: 142 VKLENVHRPEDVRDV--IIKKMVDMYEADGVNEDATMHFNVNGTTVILLVGVNGVGKTTT 199 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKLS K G V+LAA DTFR+ A QL+ W R V + +D A++ +EA Sbjct: 200 IGKLSTKYQQQGKSVLLAAADTFRAGATKQLQEWGIRAGVPVVAGKEKADPASVVFEAVA 259 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 +A+ + D+L +DTAGRL NN LM + KM R++KR P APH VL VLDATTGQNAL+ Sbjct: 260 KARDEHYDILFVDTAGRLQNNVNLMQELEKMKRIIKREIPGAPHEVLLVLDATTGQNALQ 319 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++F + TG+++TKMDGTA+GG + I ++PV ++G GE +DL F ++F Sbjct: 320 QAKLFKNSSDVTGIVLTKMDGTAKGGIVFAIRNDMQLPVKWVGFGEKASDLREFKPEEF 378 >gi|255281051|ref|ZP_05345606.1| signal recognition particle-docking protein FtsY [Bryantella formatexigens DSM 14469] gi|255268499|gb|EET61704.1| signal recognition particle-docking protein FtsY [Bryantella formatexigens DSM 14469] Length = 311 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 127/301 (42%), Positives = 181/301 (60%), Gaps = 4/301 (1%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66 E + R+L +G + T + GI I S +D+ EE+E+ LI D+G+ I Sbjct: 2 EEKKGFFRRLAEGLSKTRDNIVSGIDSIFSGFSSIDEDFYEEIEETLIMGDLGINATTAI 61 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKT 125 +E+L K+ K+ ++ LI + + ++F +R V+LV+GVNGVGKT Sbjct: 62 IEDL--KKKVKENHIKEPSECKRYLIESIRQQMEVTETAYEFENRTSVVLVIGVNGVGKT 119 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T +GKL+ K+ D G KV+LAA DTFR+AA +QL WA+R + + + GSD A++ Y+A Sbjct: 120 TSVGKLAGKLKDQGKKVVLAAADTFRAAAGEQLSEWANRAGVEIISGQEGSDPASVVYDA 179 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+A+ DVL+ DTAGRLHN LM +GK+ R+L++ P A L VLD TTGQNA Sbjct: 180 VAAAKARHADVLLCDTAGRLHNKKNLMNELGKINRILEKEYPEAYRETLVVLDGTTGQNA 239 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L Q F V TG+I+TK+DGTA+GG I I IPV ++GVGE I DL+ F A++ Sbjct: 240 LVQAREFAEVTNITGIILTKLDGTAKGGIAIAIHSELGIPVKYIGVGESIEDLQKFNAEE 299 Query: 306 F 306 F Sbjct: 300 F 300 >gi|164414409|ref|NP_001105732.1| chloroplast srp54 receptor1 [Zea mays] gi|33413157|emb|CAD70570.1| chloroplast SRP receptor cpFtsY precursor [Zea mays] gi|238006492|gb|ACR34281.1| unknown [Zea mays] Length = 362 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 188/306 (61%), Gaps = 10/306 (3%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVR--EELEDLLIRSDIGVAVAQKIVEE 69 S + KL GF+ T L + ++++ L D R ++LE+ L+ SD G ++ +IV+ Sbjct: 58 SDVEKLFSGFSKTRENLSV-VDELLTYWNLADTDRVLDDLEEALLVSDFGPKISFRIVDT 116 Query: 70 LLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKT 125 L + R K S + + I ++L SK N + + +P VI++VGVNG GKT Sbjct: 117 LREEIRDGKLKSGAEIKAALKRCILELLT--SKGGNSELNLGFRKPAVIMIVGVNGGGKT 174 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SEIGSDAAALAYE 184 T +GKL+ + + G+KV++AAGDTFR+AA DQL++WA+RT ++ V ++ + A+ + Sbjct: 175 TSLGKLAYRFKNEGVKVLMAAGDTFRAAARDQLEVWAERTGSEIVIDNDKKAQPPAVLSQ 234 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A K+ + + DV++ DT+GRLH N LM + +VL + P AP+ +L VLD TTG N Sbjct: 235 AVKRGKREGFDVVLCDTSGRLHTNYGLMEELVSCKKVLAKALPGAPNEILLVLDGTTGLN 294 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 L+Q F+ V G TG I+TK+DGTARGG ++ +V IPV F+GVGEG+ DL+PF A+ Sbjct: 295 MLQQAREFNDVVGVTGFILTKLDGTARGGCVVSVVDELGIPVKFIGVGEGMEDLQPFDAE 354 Query: 305 DFSAVI 310 F I Sbjct: 355 AFVEAI 360 >gi|284045138|ref|YP_003395478.1| signal recognition particle-docking protein FtsY [Conexibacter woesei DSM 14684] gi|283949359|gb|ADB52103.1| signal recognition particle-docking protein FtsY [Conexibacter woesei DSM 14684] Length = 331 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 115/286 (40%), Positives = 174/286 (60%), Gaps = 7/286 (2%) Query: 27 KLKEGITDIISS---RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-Q 82 K +E +T I++ LD+ E+LE+ LI +D+G +IVE+L + D++ + Sbjct: 43 KTREALTSEITATLFEDLDEETWEKLEEALIAADVGARTTAEIVEQLEQEADRGDLAGGE 102 Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLK 141 ++ ++EL+ + + +P D + P V+LVVGVNG GKTT +GKL+ + + G K Sbjct: 103 QLTARLTELLADVAR-VGEP-RIDLTPSPTVLLVVGVNGTGKTTSVGKLAWHLRKELGQK 160 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 V+L A DTFR+AA++QL+ W+ R FV SD A++AYE + DV+I+DT Sbjct: 161 VVLGAADTFRAAAVEQLEEWSRRADVRFVKGPPDSDPASVAYETVSTGVREGADVIIVDT 220 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AGRLH LMA + K+ RV+ + P APH L +DATTGQN LRQ ++F +G+ Sbjct: 221 AGRLHTQDNLMAELAKVRRVITKQLPDAPHETLITVDATTGQNGLRQAKLFAEAVDVSGI 280 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 ++TK+DGTA+GG + I +IPV +G+GE + DL PF DF+ Sbjct: 281 VLTKLDGTAKGGIALAIARELEIPVKMIGIGEQLEDLRPFDPDDFA 326 >gi|296111747|ref|YP_003622129.1| signal recognition particle receptor FtsY [Leuconostoc kimchii IMSNU 11154] gi|295833279|gb|ADG41160.1| signal recognition particle receptor FtsY [Leuconostoc kimchii IMSNU 11154] Length = 454 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 115/277 (41%), Positives = 169/277 (61%), Gaps = 14/277 (5%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKML 96 R +D+ E+LE+ L+ +D+G +A KI +EL ++V ++ + DV ++I K + Sbjct: 173 RSVDEDFFEDLEETLVGADVGFDMAIKISDEL-----REEVKLENAKHKEDVRDVIIKKM 227 Query: 97 MPLSKPFNWDFSHRPH-------VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 + + + D H VIL+VGVNGVGKTT IGKLS K G V+LAA DT Sbjct: 228 VDMYEADGVDEDATMHFNSNGTTVILLVGVNGVGKTTTIGKLSTKYQQQGKSVLLAAADT 287 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+ A QL+ W R V + +D A++ +EA +A+ ++ DVL +DTAGRL NN Sbjct: 288 FRAGATKQLQEWGQRAGVPVVSGKEKADPASVVFEAVTKARDEQFDVLFVDTAGRLQNNV 347 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 LM + KM R+++R P APH VL VLDATTGQNAL+Q ++F + +G+++TKMDGT Sbjct: 348 NLMQELEKMKRIIQREIPGAPHEVLLVLDATTGQNALQQAKLFKDSSDVSGIVLTKMDGT 407 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 A+GG + I +PV ++G GE +DL F ++F Sbjct: 408 AKGGIVFAIRNEMHLPVKWVGFGEKASDLREFKPEEF 444 >gi|261419393|ref|YP_003253075.1| signal recognition particle-docking protein FtsY [Geobacillus sp. Y412MC61] gi|319766208|ref|YP_004131709.1| signal recognition particle-docking protein FtsY [Geobacillus sp. Y412MC52] gi|261375850|gb|ACX78593.1| signal recognition particle-docking protein FtsY [Geobacillus sp. Y412MC61] gi|317111074|gb|ADU93566.1| signal recognition particle-docking protein FtsY [Geobacillus sp. Y412MC52] Length = 328 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 128/309 (41%), Positives = 185/309 (59%), Gaps = 23/309 (7%) Query: 13 WIRKLTKGFASTSLKLKEGIT-----------DIISS-RRLDDGVREELEDLLIRSDIGV 60 W K TK + + K KEG++ D+I+ R++D+ EELE++LI +D+GV Sbjct: 7 WKEKWTKQADAVTEKFKEGLSKTRNSLAGKVNDLIARYRKVDEEFFEELEEILIAADVGV 66 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP--------H 112 ++V+EL + +++ + DV I + L+ + + D Sbjct: 67 TTVMELVDELKMEVKRRNIQDPAQMRDV---IAEKLVDIYRAGADDKELSALNIQEGGLT 123 Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 VIL VGVNGVGKTT IGKL+ K+ G V+LAAGDTFR+ AI+QL+ W +R D + Sbjct: 124 VILFVGVNGVGKTTTIGKLAHKLKSEGKSVLLAAGDTFRAGAIEQLEAWGERVGVDVIKQ 183 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 GSD AA+ Y+A + A+A+ VDVL+ DTAGRL N LM + K+ RV+ R P APH Sbjct: 184 AAGSDPAAVMYDAIQAAKARGVDVLLCDTAGRLQNKVNLMKELEKVKRVISREIPGAPHE 243 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 VL VLDATTGQNA+ Q ++F TG+++TK+DGTA+GG ++ I IPV +G+G Sbjct: 244 VLLVLDATTGQNAMSQAKLFKEATDVTGIVLTKLDGTAKGGIVLAIRNEMAIPVKLVGLG 303 Query: 293 EGINDLEPF 301 E ++DL+ F Sbjct: 304 EKMDDLQVF 312 >gi|332638235|ref|ZP_08417098.1| signal recognition particle-docking protein FtsY [Weissella cibaria KACC 11862] Length = 406 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 114/275 (41%), Positives = 161/275 (58%), Gaps = 10/275 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP--LSKPFNWDFSHR 110 LI +D+G A ++ +EL R + + D+S +I L+ S+ N D S Sbjct: 135 LIGADVGAQTALQLTDEL---RNEVKLQNAKSKADISRVIIDKLVEHYRSQGVNEDASMH 191 Query: 111 -----PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 P VIL VGVNGVGKTT IGK+S + G +V+LAA DTFR+ A QL+ W +R Sbjct: 192 FAPEGPTVILFVGVNGVGKTTTIGKMSARYKAEGKQVVLAAADTFRAGATQQLQAWGERN 251 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 V +D A++ Y+ K A D+L +DTAGRL NN LM + KM R++ R Sbjct: 252 GIPVVAGAANADPASVVYDGVKTAIETNADILFVDTAGRLQNNVNLMQELAKMKRIITRE 311 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P+ P VL LDATTGQNAL+Q +F TG+++TK+DGTA+GG ++PI +P Sbjct: 312 LPNEPQEVLLALDATTGQNALQQARLFKDSTDVTGIVLTKLDGTAKGGIILPIRNELHLP 371 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEK 320 V ++G+GE + DL+PF A DF+ + G L G++K Sbjct: 372 VKWVGLGEQVGDLQPFDADDFAKSLFGSLLIGDDK 406 >gi|257791123|ref|YP_003181729.1| signal recognition particle-docking protein FtsY [Eggerthella lenta DSM 2243] gi|317488147|ref|ZP_07946722.1| signal recognition particle-docking protein FtsY [Eggerthella sp. 1_3_56FAA] gi|257475020|gb|ACV55340.1| signal recognition particle-docking protein FtsY [Eggerthella lenta DSM 2243] gi|316912775|gb|EFV34309.1| signal recognition particle-docking protein FtsY [Eggerthella sp. 1_3_56FAA] Length = 306 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 117/312 (37%), Positives = 192/312 (61%), Gaps = 16/312 (5%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + ++++G + K KE + ++ LD+ + LE+ LI +D+G A A +IVE Sbjct: 1 MGFFDRISEGLTRSRDKFKEQMNVLLDRGPDLDEEFWDGLEETLILADVGGAAAAEIVEG 60 Query: 70 LLTKRYAKDVSVQRVL---YDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKT 125 L +D + ++ L Y V +L++ + D +P ++L VG+NG GKT Sbjct: 61 L------RDQATRKALPDAYAVLDLLNDQIASTFTEGGEDVLGGQPALVLFVGINGTGKT 114 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T +GKL+K+ +DAG V+L + DTFR+AAI+QL++WA+R + + V E GSD A++ Y+ Sbjct: 115 TTVGKLAKEATDAGRTVILGSADTFRAAAIEQLEVWAERANVEVVTRERGSDPASVCYDT 174 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 ++A+++ D+++IDTAGRLH ++ LM + K++ V+++ ++VL V DATTGQN Sbjct: 175 IERAESRGADLVLIDTAGRLHTSADLMRELEKVVNVVRKRSQLPVYTVL-VTDATTGQNG 233 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK--IPVYFLGVGEGINDLEPFVA 303 L Q F G+I+TK+DGTA+GG I + V+H+ +PV +GVGEG++DL F A Sbjct: 234 LSQAREFDRALDLDGVIVTKLDGTAKGG--IALAVSHELGLPVLKIGVGEGLDDLRDFDA 291 Query: 304 KDFSAVITGCLD 315 DF+ + G D Sbjct: 292 HDFARALVGEFD 303 >gi|322516386|ref|ZP_08069311.1| cell division protein FtsY [Streptococcus vestibularis ATCC 49124] gi|322125119|gb|EFX96512.1| cell division protein FtsY [Streptococcus vestibularis ATCC 49124] Length = 434 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 127/319 (39%), Positives = 186/319 (58%), Gaps = 18/319 (5%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 K +E + R L K + +L E + RR+D+ EELE++LI SD+GV VA Sbjct: 125 KTETEQEKYNRTLKKTRTGFAARLNEFFANF---RRVDEEFFEELEEMLILSDVGVNVAT 181 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH--------VILV 116 ++ E+L RY + + D+ LI + L+ + + D ++ H V+L Sbjct: 182 QLTEDL---RYEARLENVKKTEDLQRLIIEKLVDI---YEKDDIYKEHINFQDGLTVMLF 235 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGKL+ K G KVML A DTFR+ A+ QL W R V + Sbjct: 236 VGVNGVGKTTSIGKLAHKYKQEGKKVMLIAADTFRAGAVAQLVEWGHRVDVPVVTGAEKA 295 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D A++ ++ ++A A+ VDVL+IDTAGRL N LMA + K+ R++KR+ P APH L Sbjct: 296 DPASVVFDGMEKALAEGVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETLLA 355 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDA+TGQNAL Q + F + TGL++TK+DG+A+GG ++ I IPV +G GE I+ Sbjct: 356 LDASTGQNALSQAKEFSKITPLTGLVLTKLDGSAKGGVVLAIRQELDIPVKLIGFGEKID 415 Query: 297 DLEPFVAKDF-SAVITGCL 314 D+ F +++F ++TG + Sbjct: 416 DIGEFHSEEFMQGLLTGLV 434 >gi|319764120|ref|YP_004128057.1| signal recognition particle-docking protein ftsy [Alicycliphilus denitrificans BC] gi|317118681|gb|ADV01170.1| signal recognition particle-docking protein FtsY [Alicycliphilus denitrificans BC] Length = 374 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 124/299 (41%), Positives = 182/299 (60%), Gaps = 7/299 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W+ +L G T I + + +++D + EELED L+ +D GV Q ++ +L Sbjct: 80 WMERLKSGLRKTG----GSIATVFTGTQINDALYEELEDALLMADTGVKATQHLLADLRR 135 Query: 73 K-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + + AK V +++ + +L PL KP +H+P VI+V GVNG GKTT IGKL Sbjct: 136 RVKEAKATEPAAVKALLADALADLLRPLEKPLVIG-AHQPTVIMVAGVNGAGKTTSIGKL 194 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++ ++D G V+LAA DTFR+AA +QL +WA R + + + E G D AA++++A +A Sbjct: 195 TRHLADHGESVLLAAADTFRAAAREQLGVWATRNTVEIISQE-GGDPAAVSFDAVTAGRA 253 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + DV+++DTAGRL LM + K+ RV+ + D APH VL V+D TGQNAL QV Sbjct: 254 RGKDVVLVDTAGRLPTQLHLMEELKKIKRVVTKADATAPHEVLLVIDGNTGQNALAQVRA 313 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F TGLI+TK+DGTA+GG L I +PVYF+GVGE + DLE F A++F+ + Sbjct: 314 FDDALSLTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKVEDLETFDAREFAQAL 372 >gi|330823605|ref|YP_004386908.1| signal recognition particle-docking protein FtsY [Alicycliphilus denitrificans K601] gi|329308977|gb|AEB83392.1| signal recognition particle-docking protein FtsY [Alicycliphilus denitrificans K601] Length = 374 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 124/299 (41%), Positives = 182/299 (60%), Gaps = 7/299 (2%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W+ +L G T I + + +++D + EELED L+ +D GV Q ++ +L Sbjct: 80 WMERLKSGLRKTG----GSIATVFTGTQINDALYEELEDALLMADTGVKATQHLLADLRR 135 Query: 73 K-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + + AK V +++ + +L PL KP +H+P VI+V GVNG GKTT IGKL Sbjct: 136 RVKEAKATEPAAVKALLADALADLLRPLEKPLVIG-AHQPTVIMVAGVNGAGKTTSIGKL 194 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++ ++D G V+LAA DTFR+AA +QL +WA R + + + E G D AA++++A +A Sbjct: 195 TRHLADHGESVLLAAADTFRAAAREQLGVWATRNTVEIISQE-GGDPAAVSFDAVTAGRA 253 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + DV+++DTAGRL LM + K+ RV+ + D APH VL V+D TGQNAL QV Sbjct: 254 RGKDVVLVDTAGRLPTQLHLMEELKKIKRVVTKADATAPHEVLLVIDGNTGQNALAQVRA 313 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F TGLI+TK+DGTA+GG L I +PVYF+GVGE + DLE F A++F+ + Sbjct: 314 FDDALSLTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKVEDLETFDAREFAQAL 372 >gi|325661269|ref|ZP_08149896.1| signal recognition particle-docking protein FtsY [Lachnospiraceae bacterium 4_1_37FAA] gi|325472776|gb|EGC75987.1| signal recognition particle-docking protein FtsY [Lachnospiraceae bacterium 4_1_37FAA] Length = 309 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 126/300 (42%), Positives = 179/300 (59%), Gaps = 4/300 (1%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67 E + ++L G A T + GI I + +D+ EELE++LI D+G+ KI+ Sbjct: 3 EKKGFFKRLVSGLAKTRDNIVSGIDSIFNGFSSIDEDFYEELEEILIMGDLGIHATMKII 62 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTT 126 E+L K K+ ++ LI + +S ++F +R V+LV+GVNGVGKTT Sbjct: 63 EDLKAK--VKENHIKEPAECKQLLIDSIKEQMSIGDTAYEFENRTSVVLVIGVNGVGKTT 120 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 +GKL+ K+ + G KV+LAA DTFR+AA +QL WA R A + + G+D AA+ Y+A Sbjct: 121 TVGKLAGKLREEGKKVVLAAADTFRAAAGEQLTEWARRADAYMIGGQEGADPAAIVYDAV 180 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+A+K DVL+ DTAGRLHN LM + K+ R++ R P A L VLD TTGQNAL Sbjct: 181 QAAKARKADVLLCDTAGRLHNKKNLMEELKKINRIIDREFPEAYRETLVVLDGTTGQNAL 240 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q F A TG+++TK+DGTA+GG + I IPV ++GVGE I DL+ F +F Sbjct: 241 AQAREFKEAADITGIVLTKLDGTAKGGIAVAIQSELGIPVKYIGVGEHIEDLQKFDPDEF 300 >gi|255306207|ref|ZP_05350379.1| putative signal recognition particle [Clostridium difficile ATCC 43255] Length = 426 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 114/258 (44%), Positives = 167/258 (64%), Gaps = 3/258 (1%) Query: 56 SDIGVAVAQKIVEELLTKRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114 +D+GV I+E L K K ++ +V ++ ++ +L ++ D P +I Sbjct: 170 ADVGVNTTMDIIERLRDKIKQKGITEPIKVREELKSIVEDILT--NENSTLDIEPAPCII 227 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 L+VGVNGVGKTT IGKL+ + G KV+LAA DTFR+AA +QL+IWA+RT+ D + + Sbjct: 228 LMVGVNGVGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQE 287 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 G+D A+ ++A K A+A+K DVLI DTAGRLHN + LM +GK+ +++ R P A VL Sbjct: 288 GADPGAVVFDAIKAAKARKTDVLICDTAGRLHNKANLMNELGKVFKIVDREFPEAKREVL 347 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DATTGQNA+ Q + F VA TG+++TK+DGTA+GG ++ + +PV +GVGE Sbjct: 348 LVVDATTGQNAVVQAKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGES 407 Query: 295 INDLEPFVAKDFSAVITG 312 + DL+ F AK FS + G Sbjct: 408 VEDLQDFNAKSFSDALFG 425 >gi|255100267|ref|ZP_05329244.1| putative signal recognition particle [Clostridium difficile QCD-63q42] Length = 426 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 114/258 (44%), Positives = 167/258 (64%), Gaps = 3/258 (1%) Query: 56 SDIGVAVAQKIVEELLTKRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114 +D+GV I+E L K K ++ +V ++ ++ +L ++ D P +I Sbjct: 170 ADVGVNTTMDIIERLRDKIKQKGITEPIKVREELKSIVEDILT--NENSTLDIEPAPCII 227 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 L+VGVNGVGKTT IGKL+ + G KV+LAA DTFR+AA +QL+IWA+RT+ D + + Sbjct: 228 LMVGVNGVGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQE 287 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 G+D A+ ++A K A+A+K DVLI DTAGRLHN + LM +GK+ +++ R P A VL Sbjct: 288 GADPGAVVFDAIKAAKARKTDVLICDTAGRLHNKANLMNELGKVFKIVDREFPEAKREVL 347 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DATTGQNA+ Q + F VA TG+++TK+DGTA+GG ++ + +PV +GVGE Sbjct: 348 LVVDATTGQNAVVQAKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGES 407 Query: 295 INDLEPFVAKDFSAVITG 312 + DL+ F AK FS + G Sbjct: 408 VEDLQDFNAKSFSDALFG 425 >gi|126698847|ref|YP_001087744.1| putative signal recognition particle [Clostridium difficile 630] gi|115250284|emb|CAJ68106.1| signal recognition particle receptor [Clostridium difficile] Length = 426 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 114/258 (44%), Positives = 167/258 (64%), Gaps = 3/258 (1%) Query: 56 SDIGVAVAQKIVEELLTKRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114 +D+GV I+E L K K ++ +V ++ ++ +L ++ D P +I Sbjct: 170 ADVGVNTTMDIIERLRDKIKQKGITEPIKVREELKSIVEDILT--NENSTLDIEPAPCII 227 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 L+VGVNGVGKTT IGKL+ + G KV+LAA DTFR+AA +QL+IWA+RT+ D + + Sbjct: 228 LMVGVNGVGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQE 287 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 G+D A+ ++A K A+A+K DVLI DTAGRLHN + LM +GK+ +++ R P A VL Sbjct: 288 GADPGAVVFDAIKAAKARKTDVLICDTAGRLHNKANLMNELGKVFKIVDREFPEAKREVL 347 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DATTGQNA+ Q + F VA TG+++TK+DGTA+GG ++ + +PV +GVGE Sbjct: 348 LVVDATTGQNAVVQAKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGES 407 Query: 295 INDLEPFVAKDFSAVITG 312 + DL+ F AK FS + G Sbjct: 408 VEDLQDFNAKSFSDALFG 425 >gi|228477265|ref|ZP_04061903.1| cell division protein FtsY [Streptococcus salivarius SK126] gi|228251284|gb|EEK10455.1| cell division protein FtsY [Streptococcus salivarius SK126] Length = 465 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 126/316 (39%), Positives = 185/316 (58%), Gaps = 12/316 (3%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 K +E + R L K + +L E + RR+D+ EELE++LI SD+GV VA Sbjct: 156 KTETEQEKYNRTLKKTRTGFAARLNEFFANF---RRVDEEFFEELEEMLILSDVGVNVAT 212 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPHVILVVGV 119 ++ E+L RY + + D+ LI + L+ + + + +F V+L VGV Sbjct: 213 QLTEDL---RYEARLENVKKTEDLQRLIIEKLVDIYEKDDVYKEQINFQDGLTVMLFVGV 269 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+ K G KVML A DTFR+ A+ QL W R V +D A Sbjct: 270 NGVGKTTSIGKLAHKYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGAEKADPA 329 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++ ++A A+ VDVL+IDTAGRL N LMA + K+ R++KR+ P APH L LDA Sbjct: 330 SVVFDGMEKALAEGVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETLLALDA 389 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNAL Q + F + TGL++TK+DG+A+GG ++ I IPV +G GE I+D+ Sbjct: 390 STGQNALSQAKEFSKITPLTGLVLTKLDGSAKGGVVLAIRQELDIPVKLIGFGEKIDDIG 449 Query: 300 PFVAKDF-SAVITGCL 314 F +++F ++TG + Sbjct: 450 EFHSEEFMQGLLTGLV 465 >gi|330717912|ref|ZP_08312512.1| signal recognition particle-docking protein FtsY [Leuconostoc fallax KCTC 3537] Length = 354 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 115/276 (41%), Positives = 167/276 (60%), Gaps = 11/276 (3%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R +D+ ++LE+ LI SD+G + +I +EL + K+ + DVS++I K L+ Sbjct: 71 RTVDEDFFDDLEETLIGSDVGFDMVIRISDELREEVKLKNAKRKE---DVSDVIIKKLVD 127 Query: 99 L--------SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + ++ + +P +I+ VGVNGVGKTT IGKL+ + AG +V+LAA DTF Sbjct: 128 IYEEEGSGEDNQMHFAPTGQPTIIMFVGVNGVGKTTTIGKLASQYQKAGKRVLLAAADTF 187 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R+ A QL+ W V + SD A++ +EA K+A+ + DVL IDTAGRL NN Sbjct: 188 RAGATKQLQEWGAIAQVPVVAGKDKSDPASVVFEAVKRARDEAYDVLFIDTAGRLQNNFN 247 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + KM RV++R P APH VL VLDATTGQNA++Q ++F TG+++TKMDGTA Sbjct: 248 LMQELEKMKRVVQREIPDAPHEVLLVLDATTGQNAIQQAKLFKDSTDVTGIVLTKMDGTA 307 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +GG + I +PV ++G GE DL F ++F Sbjct: 308 KGGIVFAIRSEMHLPVKWIGFGEKATDLRVFKPEEF 343 >gi|312131071|ref|YP_003998411.1| signal recognition particle-docking protein ftsy [Leadbetterella byssophila DSM 17132] gi|311907617|gb|ADQ18058.1| signal recognition particle-docking protein FtsY [Leadbetterella byssophila DSM 17132] Length = 318 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 109/256 (42%), Positives = 159/256 (62%), Gaps = 6/256 (2%) Query: 52 LLIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYD-VSELIHKM-LMPLSKPFNW 105 +LI SD+GV KI+ + + +Y + R+L + V+ L+ + ++ F Sbjct: 51 ILISSDVGVDTTVKIIRRIEARVARDKYTSTSELDRILREEVAALLQENNSQDVTNSFET 110 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 +P+V++VVGVNGVGKTT IGKL+ S G KV+L A DTFR+AA+DQLK+W R Sbjct: 111 QNLPKPYVLMVVGVNGVGKTTTIGKLAHNFSKNGKKVVLGAADTFRAAAVDQLKLWGQRV 170 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + + +D +++AY+A K+ DV+IIDTAGRLH LM +GK+ RV++++ Sbjct: 171 GVEVIDHGMNTDPSSVAYDAVKKGVEVGADVIIIDTAGRLHTKVNLMNELGKIKRVMQKV 230 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P APH V+ VLD +TGQNA+ Q F V L +TK+DGTA+GG +I I KIP Sbjct: 231 LPEAPHEVMLVLDGSTGQNAVIQAREFTRVTDVNSLAITKLDGTAKGGVVIGISDEFKIP 290 Query: 286 VYFLGVGEGINDLEPF 301 V ++GVGE + DL+ F Sbjct: 291 VKYIGVGEKMEDLQVF 306 >gi|254974795|ref|ZP_05271267.1| putative signal recognition particle [Clostridium difficile QCD-66c26] gi|255092183|ref|ZP_05321661.1| putative signal recognition particle [Clostridium difficile CIP 107932] gi|255313922|ref|ZP_05355505.1| putative signal recognition particle [Clostridium difficile QCD-76w55] gi|255516601|ref|ZP_05384277.1| putative signal recognition particle [Clostridium difficile QCD-97b34] gi|255649701|ref|ZP_05396603.1| putative signal recognition particle [Clostridium difficile QCD-37x79] gi|260682857|ref|YP_003214142.1| putative signal recognition particle [Clostridium difficile CD196] gi|260686455|ref|YP_003217588.1| putative signal recognition particle [Clostridium difficile R20291] gi|260209020|emb|CBA62114.1| putative signal recognition particle [Clostridium difficile CD196] gi|260212471|emb|CBE03377.1| putative signal recognition particle [Clostridium difficile R20291] Length = 426 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 114/258 (44%), Positives = 167/258 (64%), Gaps = 3/258 (1%) Query: 56 SDIGVAVAQKIVEELLTKRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114 +D+GV I+E L K K ++ +V ++ ++ +L ++ D P +I Sbjct: 170 ADVGVNTTMDIIERLRDKIKQKGITEPIKVREELKSIVEDILT--NENSTLDIEPAPCII 227 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 L+VGVNGVGKTT IGKL+ + G KV+LAA DTFR+AA +QL+IWA+RT+ D + + Sbjct: 228 LMVGVNGVGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQE 287 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 G+D A+ ++A K A+A+K DVLI DTAGRLHN + LM +GK+ +++ R P A VL Sbjct: 288 GADPGAVVFDAIKAAKARKTDVLICDTAGRLHNKANLMNELGKVFKIVDREFPEAKREVL 347 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DATTGQNA+ Q + F VA TG+++TK+DGTA+GG ++ + +PV +GVGE Sbjct: 348 LVVDATTGQNAVVQAKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGES 407 Query: 295 INDLEPFVAKDFSAVITG 312 + DL+ F AK FS + G Sbjct: 408 VEDLQDFNAKSFSDALFG 425 >gi|91787174|ref|YP_548126.1| signal recognition particle-docking protein FtsY [Polaromonas sp. JS666] gi|91696399|gb|ABE43228.1| signal recognition particle-docking protein FtsY [Polaromonas sp. JS666] Length = 379 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 129/322 (40%), Positives = 191/322 (59%), Gaps = 28/322 (8%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 VA E W+ KL G T I+ + + R+DD + E+LE L+ +D GV + Sbjct: 67 VAPERERWLAKLQAGLRKTG----SSISTVFTGSRIDDELYEDLETALLMADTGVKATEY 122 Query: 66 IVEELLTKRYAKD------VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 ++ E+ KR KD V+V+ L D + ++L PL + ++P VI+V GV Sbjct: 123 LLAEV--KRRVKDGGMTHPVAVKNALVDA---LAQLLKPLEQALVIG-QYQPTVIMVTGV 176 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NG GKTT IGKL++ ++ G V+LAA DTFR+AA +QL IWADR + + + S+ G D A Sbjct: 177 NGAGKTTSIGKLTRHLAAEGASVLLAAADTFRAAAREQLSIWADRNTVEII-SQAGGDPA 235 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A++++A +A+ DV+++DTAGRL LM + K+ RV+++ D APH VL V+D Sbjct: 236 AVSFDAVTAGKARGKDVVLVDTAGRLPTQLHLMEELRKIKRVVQKADATAPHEVLLVIDG 295 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK-----------IPVYF 288 TGQNAL QV+ F TGL++TK+DGTA+GG L I + + +PVYF Sbjct: 296 NTGQNALSQVKAFDEALQLTGLVVTKLDGTAKGGVLAAIALWARERQEVAPDLRPVPVYF 355 Query: 289 LGVGEGINDLEPFVAKDFSAVI 310 +GVGE + DLE F A++F+ + Sbjct: 356 IGVGEKLEDLETFSAREFAQAL 377 >gi|94986767|ref|YP_594700.1| Signal renition particle GTPase [Lawsonia intracellularis PHE/MN1-00] gi|94731016|emb|CAJ54379.1| Signal renition particle GTPase [Lawsonia intracellularis PHE/MN1-00] Length = 435 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 123/308 (39%), Positives = 187/308 (60%), Gaps = 11/308 (3%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66 SE + K+ G A T L +G+ + S ++L + +ELE+L I SD+GV A+ + Sbjct: 131 SEQNRLLTKIHTGLAKTREHLSQGLKTVFSHHKKLSNDFWDELEELFILSDMGVETAEML 190 Query: 67 VEELLTKRYAKDVSVQR----VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 L + ++S+ +L + E+I K + P N P VIL++GVNGV Sbjct: 191 TSRLKIRATKANISIPEELSPLLANELEIILK-ISPRVLAIN-----PPEVILLIGVNGV 244 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT I KL+ +M G KV+LAA DTFR+AAI+QL++WA R F G+D AA+A Sbjct: 245 GKTTTIAKLAYRMHLQGKKVLLAAADTFRAAAIEQLEVWAQRIGIVFYTKGTGADPAAVA 304 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 +EA + A K+ DV++IDTAGRLH + LM + K+ V+ + P APH + ++DATTG Sbjct: 305 WEAVEHAIQKQFDVVLIDTAGRLHTKTNLMDELSKIRNVIAKKHPGAPHRTILIIDATTG 364 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL+Q ++F G +I+TK+DGTA+GG I + + + IP+ ++G+GE + DL+PF Sbjct: 365 QNALQQTKVFKESTGIDEIIVTKLDGTAKGGVAIAVSLQYGIPITYVGLGEKMEDLQPFN 424 Query: 303 AKDFSAVI 310 + F+ + Sbjct: 425 GEKFAKAL 432 >gi|69246108|ref|ZP_00603814.1| Cell division transporter substrate-binding protein FtsY [Enterococcus faecium DO] gi|227550771|ref|ZP_03980820.1| signal recognition particle docking protein FtsY [Enterococcus faecium TX1330] gi|257878773|ref|ZP_05658426.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecium 1,230,933] gi|257881413|ref|ZP_05661066.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecium 1,231,502] gi|257885681|ref|ZP_05665334.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecium 1,231,501] gi|257887972|ref|ZP_05667625.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecium 1,141,733] gi|257890631|ref|ZP_05670284.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecium 1,231,410] gi|257893225|ref|ZP_05672878.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecium 1,231,408] gi|257896410|ref|ZP_05676063.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecium Com12] gi|257899384|ref|ZP_05679037.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecium Com15] gi|258615161|ref|ZP_05712931.1| signal recognition particle-docking protein FtsY [Enterococcus faecium DO] gi|293379495|ref|ZP_06625639.1| signal recognition particle-docking protein FtsY [Enterococcus faecium PC4.1] gi|293562994|ref|ZP_06677461.1| signal recognition particle-docking protein FtsY [Enterococcus faecium E1162] gi|293567877|ref|ZP_06679218.1| signal recognition particle-docking protein FtsY [Enterococcus faecium E1071] gi|293570733|ref|ZP_06681783.1| signal recognition particle-docking protein FtsY [Enterococcus faecium E980] gi|294621995|ref|ZP_06701139.1| signal recognition particle-docking protein FtsY [Enterococcus faecium U0317] gi|314937657|ref|ZP_07844983.1| signal recognition particle-docking protein FtsY [Enterococcus faecium TX0133a04] gi|314942844|ref|ZP_07849657.1| signal recognition particle-docking protein FtsY [Enterococcus faecium TX0133C] gi|314948020|ref|ZP_07851424.1| signal recognition particle-docking protein FtsY [Enterococcus faecium TX0082] gi|314950938|ref|ZP_07854007.1| signal recognition particle-docking protein FtsY [Enterococcus faecium TX0133A] gi|314991414|ref|ZP_07856891.1| signal recognition particle-docking protein FtsY [Enterococcus faecium TX0133B] gi|314995065|ref|ZP_07860185.1| signal recognition particle-docking protein FtsY [Enterococcus faecium TX0133a01] gi|68195403|gb|EAN09850.1| Cell division transporter substrate-binding protein FtsY [Enterococcus faecium DO] gi|227180089|gb|EEI61061.1| signal recognition particle docking protein FtsY [Enterococcus faecium TX1330] gi|257813001|gb|EEV41759.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecium 1,230,933] gi|257817071|gb|EEV44399.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecium 1,231,502] gi|257821537|gb|EEV48667.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecium 1,231,501] gi|257824026|gb|EEV50958.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecium 1,141,733] gi|257826991|gb|EEV53617.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecium 1,231,410] gi|257829604|gb|EEV56211.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecium 1,231,408] gi|257832975|gb|EEV59396.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecium Com12] gi|257837296|gb|EEV62370.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecium Com15] gi|291589462|gb|EFF21269.1| signal recognition particle-docking protein FtsY [Enterococcus faecium E1071] gi|291598422|gb|EFF29495.1| signal recognition particle-docking protein FtsY [Enterococcus faecium U0317] gi|291605120|gb|EFF34587.1| signal recognition particle-docking protein FtsY [Enterococcus faecium E1162] gi|291609205|gb|EFF38477.1| signal recognition particle-docking protein FtsY [Enterococcus faecium E980] gi|292642018|gb|EFF60184.1| signal recognition particle-docking protein FtsY [Enterococcus faecium PC4.1] gi|313590791|gb|EFR69636.1| signal recognition particle-docking protein FtsY [Enterococcus faecium TX0133a01] gi|313593894|gb|EFR72739.1| signal recognition particle-docking protein FtsY [Enterococcus faecium TX0133B] gi|313596947|gb|EFR75792.1| signal recognition particle-docking protein FtsY [Enterococcus faecium TX0133A] gi|313598316|gb|EFR77161.1| signal recognition particle-docking protein FtsY [Enterococcus faecium TX0133C] gi|313643034|gb|EFS07614.1| signal recognition particle-docking protein FtsY [Enterococcus faecium TX0133a04] gi|313645618|gb|EFS10198.1| signal recognition particle-docking protein FtsY [Enterococcus faecium TX0082] Length = 332 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 98/194 (50%), Positives = 133/194 (68%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 VIL VGVNGVGKTT IGKL+ + + G KV++AA DTFR+ AIDQL +W +R + V Sbjct: 127 VILFVGVNGVGKTTSIGKLAHQFKNEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRG 186 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 G D AA+ ++A ++A+ ++ DVL++DTAGRL N LM + K+ RV++R P AP Sbjct: 187 NAGGDPAAVVFDALERAKTEQADVLLVDTAGRLQNKVNLMNELEKIKRVIQRELPEAPQE 246 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 L VLDATTGQNA+ Q + F TGL++TK+DGTA+GG ++ I +PV +G+G Sbjct: 247 TLLVLDATTGQNAMVQAKQFKETTDVTGLVLTKLDGTAKGGIVLAIRNELHLPVKLVGLG 306 Query: 293 EGINDLEPFVAKDF 306 EGI+DLEPF DF Sbjct: 307 EGIDDLEPFDPNDF 320 >gi|115442343|ref|NP_001045451.1| Os01g0958100 [Oryza sativa Japonica Group] gi|113534982|dbj|BAF07365.1| Os01g0958100 [Oryza sativa Japonica Group] Length = 347 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 119/313 (38%), Positives = 194/313 (61%), Gaps = 12/313 (3%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVR--EELEDLLIRSDIGVAVA 63 + ++ S + KL GF+ T L + ++++ L D R +ELE+ L+ SD G ++ Sbjct: 37 IQEKAKSDVEKLFSGFSKTRESLSV-VDELLTYWNLADTDRVLDELEEALLVSDFGPKIS 95 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFS---HRPHVILVVG 118 +IV+ L + +D ++ ++ E + + ++ L SK N + +P VI++VG Sbjct: 96 FRIVDTL--REEIRDGKLKSG-AEIKEALKRCILELLTSKGGNPELQLGFRKPAVIMIVG 152 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SEIGSD 177 VNG GKTT +GKL+ + + G+KV++AAGDTFR+AA DQL++WA+RT ++ V ++ + Sbjct: 153 VNGGGKTTSLGKLAYRFKNEGVKVLMAAGDTFRAAARDQLEVWAERTGSEIVIDNDKKAK 212 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 A++ +A K+ + + D+++ DT+GRLH N LM + +V+ + P AP+ +L VL Sbjct: 213 PASVLSQAVKRGKREGFDLVLCDTSGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVL 272 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 D TTG N L+Q F+ V G TG ++TK+DGTARGG ++ +V IPV F+GVGEG+ D Sbjct: 273 DGTTGLNMLQQAREFNDVVGVTGFVLTKLDGTARGGCVVSVVDELGIPVKFIGVGEGMED 332 Query: 298 LEPFVAKDFSAVI 310 L+PF A+ F I Sbjct: 333 LQPFDAEAFVEAI 345 >gi|297530630|ref|YP_003671905.1| signal recognition particle-docking protein FtsY [Geobacillus sp. C56-T3] gi|297253882|gb|ADI27328.1| signal recognition particle-docking protein FtsY [Geobacillus sp. C56-T3] Length = 328 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 129/312 (41%), Positives = 187/312 (59%), Gaps = 29/312 (9%) Query: 13 WIRKLTKGFASTSLKLKEGIT-----------DIISS-RRLDDGVREELEDLLIRSDIGV 60 W K TK + + K KEG++ D+I+ R++D+ EELE++LI +D+GV Sbjct: 7 WKEKWTKQADAVTEKFKEGLSKTRNSLAGKVNDLIARYRKVDEEFFEELEEILIVADVGV 66 Query: 61 AVAQKIVEEL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP------ 111 ++V+EL + +R +D + R ++I + L+ + + D Sbjct: 67 TTVMELVDELKMEVKRRNIQDPAQMR------DVIAEKLVDIYRAGADDKELSALNIQEG 120 Query: 112 --HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 VIL VGVNGVGKTT IGKL+ K+ G V+LAAGDTFR+ AI+QL+ W +R D Sbjct: 121 GLTVILFVGVNGVGKTTTIGKLAHKLKSEGKSVLLAAGDTFRAGAIEQLEAWGERVGVDV 180 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + GSD AA+ Y+A + A+A+ VDVL+ DTAGRL N LM + K+ RV+ R P A Sbjct: 181 IKQAAGSDPAAVMYDAIQAAKARGVDVLLCDTAGRLQNKVNLMKELEKVKRVISREVPGA 240 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH VL VLDATTGQNA+ Q ++F TG+++TK+DGTA+GG ++ I IPV + Sbjct: 241 PHEVLLVLDATTGQNAMSQAKLFKEATDVTGIVLTKLDGTAKGGIVLAIRNEMAIPVKLV 300 Query: 290 GVGEGINDLEPF 301 G+GE ++DL+ F Sbjct: 301 GLGEKMDDLQVF 312 >gi|253578966|ref|ZP_04856237.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849909|gb|EES77868.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 316 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 128/306 (41%), Positives = 191/306 (62%), Gaps = 10/306 (3%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64 +A E + ++L G A T + G I S +D+ EELE++LI DIG+ Sbjct: 1 MAEEKKGFFKRLVSGLAKTRDNIVAGFDSIFSGFSSIDEDFYEELEEILIMGDIGINATT 60 Query: 65 KIVEEL---LTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 I+E L +++R+ K+ + +++L ++E+ +M + ++ ++F +R V+LV+GVN Sbjct: 61 SIIENLKKEVSERHIKEPMECKQLL--INEIKDQMRVDSTE---YEFENRRSVVLVIGVN 115 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT +GKL+ K+ D G KV+LAA DTFR+AA +QL WA+R + + + G+D A+ Sbjct: 116 GVGKTTSVGKLAGKLKDQGKKVILAAADTFRAAAGEQLTEWANRAGVEIIGGQAGADPAS 175 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + Y+A A+A+ DVL+ DTAGRLHN LM + K+ R+L+R P A L VLD T Sbjct: 176 VIYDAVAAAKARNADVLLCDTAGRLHNKKNLMEELRKIYRILEREYPDAYLETLVVLDGT 235 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNAL Q F VA +G+I+TK+DGTA+GG + I IPV ++GVGE I+DL+ Sbjct: 236 TGQNALAQARQFAEVANVSGIILTKLDGTAKGGIAVAIQSELDIPVKYIGVGESIDDLQK 295 Query: 301 FVAKDF 306 F A F Sbjct: 296 FDADAF 301 >gi|148241110|ref|YP_001226267.1| Signal recognition particle GTPase, FtsY [Synechococcus sp. RCC307] gi|147849420|emb|CAK26914.1| Signal recognition particle GTPase, FtsY [Synechococcus sp. RCC307] Length = 490 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 111/315 (35%), Positives = 180/315 (57%), Gaps = 20/315 (6%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +++ E + W+ +L +G T + + + L + +++E LL+++D+GV Sbjct: 175 QISLEEIDWLGRLRRGMEKTRQNFVTTLLENLGDDPLSEASLDDIETLLLQADVGVEATD 234 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL------------SKPFNWDFSHRPH 112 ++++ LL +R + + D SE I+ + L + P R + Sbjct: 235 QVLD-LLRRR------MNEAVVDGSEAINLLKDQLRNLLDAPIKSMGANPLLAPQKGRLN 287 Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 + L+VGVNGVGKTT +GKL+ +G ++AAGDTFR+AA+ QL++WADR+ V + Sbjct: 288 IWLMVGVNGVGKTTTLGKLANLAVRSGYSCLVAAGDTFRAAAVQQLQVWADRSGVPLVAN 347 Query: 173 -EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 +D AA+ ++A AQ+K +++L++DTAGRL + LM + K+ R++ RL P A Sbjct: 348 PSANADPAAVVFDAIGAAQSKDIELLLVDTAGRLQTKNNLMEELAKVRRIVDRLAPDAAV 407 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 L VLDA+ GQN LRQ F AG TG+++TK+DGTARGG + +P+ F+G Sbjct: 408 ESLLVLDASQGQNGLRQAMAFAKAAGLTGVVLTKLDGTARGGVAFAVASESNLPIRFIGA 467 Query: 292 GEGINDLEPFVAKDF 306 GEG+ DL PF + +F Sbjct: 468 GEGLRDLRPFNSFEF 482 >gi|331084976|ref|ZP_08334063.1| signal recognition particle-docking protein FtsY [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408676|gb|EGG88141.1| signal recognition particle-docking protein FtsY [Lachnospiraceae bacterium 9_1_43BFAA] Length = 309 Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 125/300 (41%), Positives = 179/300 (59%), Gaps = 4/300 (1%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67 E + ++L G A T + GI I + +D+ EELE++LI D+G+ +I+ Sbjct: 3 EKKGFFKRLVSGLAKTRDNIVSGIDSIFNGFSSIDEDFYEELEEILIMGDLGIHATMQII 62 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTT 126 E+L K K+ ++ LI + +S ++F +R V+LV+GVNGVGKTT Sbjct: 63 EDLKAK--VKENHIKEPAECKQLLIDSIKEQMSIGDTAYEFENRTSVVLVIGVNGVGKTT 120 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 +GKL+ K+ + G KV+LAA DTFR+AA +QL WA R A + + G+D AA+ Y+A Sbjct: 121 TVGKLAGKLREEGKKVVLAAADTFRAAAGEQLTEWARRADAYMIGGQEGADPAAIVYDAV 180 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+A+K DVL+ DTAGRLHN LM + K+ R++ R P A L VLD TTGQNAL Sbjct: 181 QAAKARKADVLLCDTAGRLHNKKNLMEELKKINRIIDREFPEAYRETLVVLDGTTGQNAL 240 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q F A TG+++TK+DGTA+GG + I IPV ++GVGE I DL+ F +F Sbjct: 241 AQAREFKEAADITGIVLTKLDGTAKGGIAVAIQAELGIPVKYIGVGEHIEDLQKFDPDEF 300 >gi|242059977|ref|XP_002459134.1| hypothetical protein SORBIDRAFT_03g046390 [Sorghum bicolor] gi|241931109|gb|EES04254.1| hypothetical protein SORBIDRAFT_03g046390 [Sorghum bicolor] Length = 366 Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 188/306 (61%), Gaps = 10/306 (3%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVR--EELEDLLIRSDIGVAVAQKIVEE 69 S + KL GF+ T L + ++++ L D R ++LE+ L+ SD G ++ +IV+ Sbjct: 62 SDVEKLFSGFSKTRENLSV-VDELLTYWNLADTDRVLDDLEEALLVSDFGPKISFRIVDT 120 Query: 70 LLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKT 125 L + R K S + + I ++L SK N + + +P VI++VGVNG GKT Sbjct: 121 LREEIRDGKLKSGAEIKAALKRCILELLT--SKGGNSELNLGFRKPAVIMIVGVNGGGKT 178 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SEIGSDAAALAYE 184 T +GKL+ + + G+KV++AAGDTFR+AA DQL++WA+RT ++ V ++ + A+ + Sbjct: 179 TSLGKLAYRFKNEGVKVLMAAGDTFRAAARDQLEVWAERTGSEIVIDNDKKAQPPAVLSQ 238 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A K+ + + DV++ DT+GRLH N LM + +VL + P AP+ +L VLD TTG N Sbjct: 239 AVKRGKREGFDVVLCDTSGRLHTNYGLMEELVSCKKVLVKALPGAPNEILLVLDGTTGLN 298 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 L+Q F+ V G TG I+TK+DGTARGG ++ +V IPV F+GVGEG+ DL+PF A+ Sbjct: 299 MLQQAREFNDVVGVTGFILTKLDGTARGGCVVSVVDELGIPVKFIGVGEGMEDLQPFDAE 358 Query: 305 DFSAVI 310 F I Sbjct: 359 AFVEAI 364 >gi|254446631|ref|ZP_05060107.1| signal recognition particle-docking protein FtsY [Verrucomicrobiae bacterium DG1235] gi|198260939|gb|EDY85247.1| signal recognition particle-docking protein FtsY [Verrucomicrobiae bacterium DG1235] Length = 308 Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 115/303 (37%), Positives = 179/303 (59%), Gaps = 2/303 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LS +K +G A ++ + E I ++LD EELE+ L SD G ++I+EE Sbjct: 2 LSIFKKFKEGLAKSAKSIAEKTGGIFGRKKLDASSIEELEEALFASDFGYETTEEIIEET 61 Query: 71 LTKRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 Y+KD +++ + + + + + ++ S+ +P VI ++GVNG GKTT Sbjct: 62 QAA-YSKDKNLRGQDVAGIGASVLRRVLDGSEGRIQFLEDKPTVICLIGVNGSGKTTTTA 120 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL + G MLAA DTFR+AAI+QLK W+ R D + + G+D+AA+A++A++ A Sbjct: 121 KLGYQYKQDGRNPMLAACDTFRAAAIEQLKEWSSRLGLDIIAGQHGADSAAVAFDAYQAA 180 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ D LI+DTAGRLH S LM + K+ RVL++ D APH L V+D + G N++ Q Sbjct: 181 KARGHDTLIVDTAGRLHTKSNLMDELAKIRRVLQKHDETAPHYSLLVVDGSLGSNSIEQA 240 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 +F+ G GL++TK+DGT+RGG L+ I K+P++FLG GE DL+ + ++ Sbjct: 241 RVFNEKFGLDGLVVTKLDGTSRGGALVGIYRELKLPIFFLGFGEKPEDLQEYRVDNYVDA 300 Query: 310 ITG 312 I G Sbjct: 301 IFG 303 >gi|120612515|ref|YP_972193.1| signal recognition particle-docking protein FtsY [Acidovorax citrulli AAC00-1] gi|120590979|gb|ABM34419.1| signal recognition particle-docking protein FtsY [Acidovorax citrulli AAC00-1] Length = 305 Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 123/308 (39%), Positives = 183/308 (59%), Gaps = 7/308 (2%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ E W+ +L G T I + + ++ D + +ELE+ L+ +D GV Sbjct: 2 QEAGQERKGWLDRLKNGLRKTGTS----IATVFTGTQISDALYDELEEALLMADTGVKAT 57 Query: 64 QKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + ++++L + + +K V +++ + +L PL KP H P VI+V GVNG Sbjct: 58 EHLLQDLRRRVKESKATDPAAVKGLLADALADLLRPLEKPLEIG-RHTPTVIMVAGVNGA 116 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL++ ++ G V+LAA DTFR+AA +QL +WADR + + V E G D AA++ Sbjct: 117 GKTTSIGKLTRHLATEGAAVLLAAADTFRAAAREQLGVWADRNTVEIVSQE-GGDPAAVS 175 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A +A+ DV+++DTAGRL LM + K+ RV+ + D APH VL V+D TG Sbjct: 176 FDAVSAGKARGKDVVLVDTAGRLPTQLHLMQELQKIKRVITKADGTAPHEVLLVIDGNTG 235 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL QV F TGL++TK+DGTA+GG L I IPVYF+GVGE + DLE F Sbjct: 236 QNALAQVRAFDDALQLTGLVVTKLDGTAKGGVLAAIAQERPIPVYFIGVGEKLEDLETFS 295 Query: 303 AKDFSAVI 310 A++F+ + Sbjct: 296 AREFAQAL 303 >gi|297565941|ref|YP_003684913.1| signal recognition particle-docking protein FtsY [Meiothermus silvanus DSM 9946] gi|296850390|gb|ADH63405.1| signal recognition particle-docking protein FtsY [Meiothermus silvanus DSM 9946] Length = 306 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 122/310 (39%), Positives = 178/310 (57%), Gaps = 12/310 (3%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 +SW+++L +G + T +E I + R + V EELE LI +D+GV Q+++EE+ Sbjct: 1 MSWLQRLREGLSKT----RENIAKSVPWNRDPEEVLEELEYALISADVGVEATQEVIEEV 56 Query: 71 LT--KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP------HVILVVGVNGV 122 K+ ++ Q ++ + + + + FN + VIL+VGVNGV Sbjct: 57 RASGKKDLREALKQALVVQLEPDLLRAKLRKVGLFNRGNIQKTTIEPAGQVILMVGVNGV 116 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT I KL + G KVM AGDTFR+A QL IW +R + GSD AALA Sbjct: 117 GKTTTIAKLGQYYQSRGKKVMFCAGDTFRAAGGAQLGIWGERIGVPVIQGPEGSDPAALA 176 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A +A+ +D+L++DTAGRLH LM + K+ R + + DP P V VLDA TG Sbjct: 177 YDAAMARKARGMDLLLVDTAGRLHTKHNLMEELVKVKRSIAKADPGEPGEVWLVLDAVTG 236 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QN L Q + F+ G TG+++TK+DGTA+GG L+PIV +P+ F+G+GE DL+PF Sbjct: 237 QNGLEQAKKFNEAVGLTGVVVTKLDGTAKGGVLVPIVRELGVPIKFIGIGEAATDLQPFD 296 Query: 303 AKDFSAVITG 312 A +F + G Sbjct: 297 AGEFVEALLG 306 >gi|295397859|ref|ZP_06807922.1| cell division protein FtsY [Aerococcus viridans ATCC 11563] gi|294973904|gb|EFG49668.1| cell division protein FtsY [Aerococcus viridans ATCC 11563] Length = 341 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 123/321 (38%), Positives = 184/321 (57%), Gaps = 26/321 (8%) Query: 3 NQKVASESLSW----IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSD 57 Q+ SES S K KG T + + ++ + R++DD ++LE+ I SD Sbjct: 19 EQQRQSESPSQDQIVFEKYDKGVEKTRRSFSDRMNELFAGFRQVDDEFFDDLEETFISSD 78 Query: 58 IG----VAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 +G +A++ + EE+ ++ KDV +++++ E+ K P N + + Sbjct: 79 VGFDMTLALSDAVREEVQRRGAISGEQVKDVIIEKMV----EIYDKGGEP-----NVEIN 129 Query: 109 HRPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 P V+L VGVNGVGKTT IGK++ ++ G KV+LAAGDTFR+ AI+QL+ WA R Sbjct: 130 ENPDGPTVVLFVGVNGVGKTTTIGKMAYQLKQDGKKVLLAAGDTFRAGAIEQLEEWARRI 189 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 V + D A++A++A K A+ D L++DTAGRL LM + KM R+L R Sbjct: 190 DVPIVTGKAQGDPASVAFDAAKTAREGGYDYLLVDTAGRLQTKINLMNELDKMKRILTRE 249 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P +PH +L VLDATTGQNAL Q + F G+++TK+DGTA+GG + I IP Sbjct: 250 LPGSPHEILLVLDATTGQNALVQAKEFDKTVDIDGIVLTKLDGTAKGGVIFAIRYEMDIP 309 Query: 286 VYFLGVGEGINDLEPFVAKDF 306 V F+G+GE ++DL+ F A+ F Sbjct: 310 VKFIGLGEKVDDLQVFDAEKF 330 >gi|227872401|ref|ZP_03990748.1| signal recognition particle-docking protein FtsY [Oribacterium sinus F0268] gi|227841761|gb|EEJ52044.1| signal recognition particle-docking protein FtsY [Oribacterium sinus F0268] Length = 291 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 109/278 (39%), Positives = 167/278 (60%), Gaps = 6/278 (2%) Query: 32 ITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90 + +I S + D+ EELE+ +I SD+ + +I++ + + + V++ R DV + Sbjct: 9 LNNIFQSNEVADEAFYEELEEAMILSDVSYSSCMRIIDAVKHEANQRGVNLTR---DVQK 65 Query: 91 LIHKMLMPLS--KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 ++ ++ L + + F +I V+GVNGVGKTT IGKL+ + G KV+LAA D Sbjct: 66 ILKDYILDLMMVEEGYYAFEQEKSIISVIGVNGVGKTTSIGKLAYHLKKKGKKVILAAAD 125 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+ AI+QL W +R D + + GSD AA+ ++A + +AK DVLIIDTAGRLHN Sbjct: 126 TFRAGAIEQLVEWGNRVGVDVIHQKEGSDPAAVVFDALQSFKAKNADVLIIDTAGRLHNK 185 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM +GK+ R++ R L VLDATTGQNA+ Q ++F + TG+I++KMD Sbjct: 186 KNLMQELGKINRIIDREFAEGYRETLVVLDATTGQNAMSQAKLFKECSQVTGVILSKMDS 245 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TA+GG + I +PV ++G GE + +L+ F AK + Sbjct: 246 TAKGGMALSIQAELGLPVKYMGTGEKVENLQRFDAKRY 283 >gi|325283670|ref|YP_004256211.1| signal recognition particle-docking protein FtsY [Deinococcus proteolyticus MRP] gi|324315479|gb|ADY26594.1| signal recognition particle-docking protein FtsY [Deinococcus proteolyticus MRP] Length = 320 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 119/315 (37%), Positives = 176/315 (55%), Gaps = 25/315 (7%) Query: 11 LSWIRKLTKGFASTSLKLKEGI----TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 ++W +L G T +L + D+ S R D+G E+LE L+ +D+G I Sbjct: 5 MTWADRLRGGLQKTRAQLNQNAGFLGRDLRSYTR-DEGALEDLEMALLAADVGGPATADI 63 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRP----- 111 + + R ++ L D LI ++ P +P F P Sbjct: 64 LRSVQASRRPDLLAA---LSDA--LIEQLEPPKQEPAAGSNGLTPWFQPRVKPSPVEPAG 118 Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 HV++V+GVNGVGKTT I KL + + G VM AGDTFR+AA QL++W +R V Sbjct: 119 HVVMVIGVNGVGKTTTIAKLGQHYMEHGKSVMFGAGDTFRAAAGAQLEVWGNRLGVPVVQ 178 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 + G D AA+A++A + +A+ D+L++DTAGRLHN + LM + K+ RV+ + D P Sbjct: 179 GKEGGDPAAVAFDAADKRKARGTDLLLVDTAGRLHNQTNLMQELQKVHRVIGKADAGEPA 238 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 V VLDA TGQN L+Q + F+ TG+++TK+DGTA+GG LIPIV +P+ F+GV Sbjct: 239 EVWMVLDAVTGQNGLQQAKKFNEAIALTGVVVTKLDGTAKGGILIPIVRELGVPIKFIGV 298 Query: 292 GEGINDLEPFVAKDF 306 GE +DL+PF A ++ Sbjct: 299 GEQADDLQPFNAAEY 313 >gi|57900093|dbj|BAD88155.1| putative chloroplast SRP receptor cpFtsY precursor [Oryza sativa Japonica Group] gi|215765041|dbj|BAG86738.1| unnamed protein product [Oryza sativa Japonica Group] gi|218189770|gb|EEC72197.1| hypothetical protein OsI_05275 [Oryza sativa Indica Group] gi|222619905|gb|EEE56037.1| hypothetical protein OsJ_04826 [Oryza sativa Japonica Group] Length = 363 Score = 199 bits (506), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 119/313 (38%), Positives = 194/313 (61%), Gaps = 12/313 (3%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVR--EELEDLLIRSDIGVAVA 63 + ++ S + KL GF+ T L + ++++ L D R +ELE+ L+ SD G ++ Sbjct: 53 IQEKAKSDVEKLFSGFSKTRESLSV-VDELLTYWNLADTDRVLDELEEALLVSDFGPKIS 111 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFS---HRPHVILVVG 118 +IV+ L + +D ++ ++ E + + ++ L SK N + +P VI++VG Sbjct: 112 FRIVDTL--REEIRDGKLKSG-AEIKEALKRCILELLTSKGGNPELQLGFRKPAVIMIVG 168 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SEIGSD 177 VNG GKTT +GKL+ + + G+KV++AAGDTFR+AA DQL++WA+RT ++ V ++ + Sbjct: 169 VNGGGKTTSLGKLAYRFKNEGVKVLMAAGDTFRAAARDQLEVWAERTGSEIVIDNDKKAK 228 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 A++ +A K+ + + D+++ DT+GRLH N LM + +V+ + P AP+ +L VL Sbjct: 229 PASVLSQAVKRGKREGFDLVLCDTSGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVL 288 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 D TTG N L+Q F+ V G TG ++TK+DGTARGG ++ +V IPV F+GVGEG+ D Sbjct: 289 DGTTGLNMLQQAREFNDVVGVTGFVLTKLDGTARGGCVVSVVDELGIPVKFIGVGEGMED 348 Query: 298 LEPFVAKDFSAVI 310 L+PF A+ F I Sbjct: 349 LQPFDAEAFVEAI 361 >gi|330954981|gb|EGH55241.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae Cit 7] Length = 442 Score = 199 bits (506), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 104/245 (42%), Positives = 156/245 (63%), Gaps = 2/245 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L +G + TS + EG+ + + + +DD + EE+E L+ +D+GV I++ Sbjct: 193 VGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIKS 252 Query: 70 LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L K K ++ + LY + + ML P+ +P H+P VILVVGVNG GKTT I Sbjct: 253 LTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNGAGKTTTI 312 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + Sbjct: 313 GKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQA 372 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q Sbjct: 373 AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQ 432 Query: 249 VEMFH 253 + F+ Sbjct: 433 AKQFN 437 >gi|294102040|ref|YP_003553898.1| signal recognition particle-docking protein FtsY [Aminobacterium colombiense DSM 12261] gi|293617020|gb|ADE57174.1| signal recognition particle-docking protein FtsY [Aminobacterium colombiense DSM 12261] Length = 310 Score = 199 bits (506), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 110/280 (39%), Positives = 168/280 (60%), Gaps = 6/280 (2%) Query: 31 GITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQRVLYDV 88 G+ + S +D+ + LE++LI D+G+ + ++++EEL KR Q + Y + Sbjct: 21 GLVSLFSGSTIDEEFWDSLEEILISGDVGIDLTEELIEELQKTVKREGLKTPDQLIAYFI 80 Query: 89 SELIHKMLM--PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + +++ + K D S P VI++VGVNG GKTT KL+++ G KV+L A Sbjct: 81 DLVTERLVAVDGMGKEIVLDKS--PKVIVLVGVNGSGKTTTAAKLAEQFHRQGKKVILGA 138 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 DTFR+AAIDQLKIW +RT + + + GSD+AA+AY+A + A+A DVLIIDTAGRLH Sbjct: 139 ADTFRAAAIDQLKIWGERTGSRVIAQQQGSDSAAVAYDALQAARASGADVLIIDTAGRLH 198 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + LM + K++RV++R L VLDA GQN Q E FH G+I++K Sbjct: 199 SKHNLMEELTKIVRVIEREVGRDSMENLLVLDAVMGQNGFAQAESFHKALSLNGVILSKY 258 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 D TA+GG ++ I +P+ ++G+GE ++DL F ++F Sbjct: 259 DNTAKGGVILAIAHRLALPIRYIGLGESVDDLRLFEPQEF 298 >gi|168030830|ref|XP_001767925.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680767|gb|EDQ67200.1| predicted protein [Physcomitrella patens subsp. patens] Length = 383 Score = 199 bits (506), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 121/301 (40%), Positives = 180/301 (59%), Gaps = 12/301 (3%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSRRLDDG--VREELEDLLIRSDIGVAVAQKIVE--- 68 I+ L GF+ T L + ++++ LD+ + +ELE++L+ SD G A KIV+ Sbjct: 81 IQLLFSGFSKTRENLAV-VDELLTYWNLDESESILDELEEVLLVSDFGPKTALKIVDTIR 139 Query: 69 -ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTT 126 ++L R ++ L + I K+L + RP V+++VGVNG GKTT Sbjct: 140 KDILAGRLKSGPQIKEAL---KKNIFKLLTERVTTTELQLGNSRPAVLMIVGVNGGGKTT 196 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAYEA 185 +GKL+ + G+KV++AAGDTFR+AA +QL++WA RT ++ V +E AA+ +A Sbjct: 197 TLGKLANRFKKEGVKVLMAAGDTFRAAAGEQLEVWAQRTGSEIVMAEGPKPRPAAVLSQA 256 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 ++A + DV++ DT+GRLH N LM + R + + AP+ VL VLD TTG N Sbjct: 257 VRRAVEEDFDVVLCDTSGRLHTNYNLMEELRGCKRAVSKALSSAPNEVLLVLDGTTGLNM 316 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L Q F+ V G TG I+TK+DGTARGG ++ +V IPV F+GVGEGI+DL+PF A+ Sbjct: 317 LAQAREFNQVIGVTGFILTKLDGTARGGCVVSVVDELSIPVKFVGVGEGIDDLQPFDAQS 376 Query: 306 F 306 F Sbjct: 377 F 377 >gi|325832904|ref|ZP_08165577.1| signal recognition particle-docking protein FtsY [Eggerthella sp. HGA1] gi|325485769|gb|EGC88233.1| signal recognition particle-docking protein FtsY [Eggerthella sp. HGA1] Length = 306 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 117/312 (37%), Positives = 191/312 (61%), Gaps = 16/312 (5%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + ++++G + K KE + ++ LD+ + LE+ LI +D+G A A +IVE Sbjct: 1 MGFFDRISEGLTRSRDKFKEQMNVLLDRGPDLDEEFWDGLEETLILADVGGAAAAEIVEG 60 Query: 70 LLTKRYAKDVSVQRVL---YDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKT 125 L +D + ++ L Y V +L++ + D +P ++L VG+NG GKT Sbjct: 61 L------RDQATRKALPDAYAVLDLLNDQIASTFTEGGEDVLGGQPALVLFVGINGTGKT 114 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T +GKL+K+ +DAG V+L + DTFR+AAI+QL++WA R + + V E GSD A++ Y+ Sbjct: 115 TTVGKLAKEATDAGRTVILGSADTFRAAAIEQLEVWAKRANVEVVTRERGSDPASVCYDT 174 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 ++A+++ D+++IDTAGRLH ++ LM + K++ V+++ ++VL V DATTGQN Sbjct: 175 IERAESRGADLVLIDTAGRLHTSADLMRELEKVVNVVRKRSQLPVYTVL-VTDATTGQNG 233 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK--IPVYFLGVGEGINDLEPFVA 303 L Q F G+I+TK+DGTA+GG I + V+H+ +PV +GVGEG++DL F A Sbjct: 234 LSQAREFDRALDLDGVIVTKLDGTAKGG--IALAVSHELGLPVLKIGVGEGLDDLRDFDA 291 Query: 304 KDFSAVITGCLD 315 DF+ + G D Sbjct: 292 HDFARALVGEFD 303 >gi|291294801|ref|YP_003506199.1| signal recognition particle-docking protein FtsY [Meiothermus ruber DSM 1279] gi|290469760|gb|ADD27179.1| signal recognition particle-docking protein FtsY [Meiothermus ruber DSM 1279] Length = 305 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 124/311 (39%), Positives = 179/311 (57%), Gaps = 14/311 (4%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 +SW+++L +G + T ++ + I + V EELE LI +D+GV Q+++EE+ Sbjct: 1 MSWLQRLKEGLSKT----RDNLVKAIPWGEDPEAVLEELEFALIAADVGVEATQEVLEEV 56 Query: 71 -------LTKRYAKDVSVQRVLYDVSELIHKM-LMPLSKPFNWDFSHRPHVILVVGVNGV 122 L + + ++VQ I K P +K + + + VIL+VGVNGV Sbjct: 57 RQSGKKDLREALKQALTVQLEPDRFRAKIRKAGFNPNAKKSTVEPAGK--VILMVGVNGV 114 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT I KL + G VM AGDTFR+A QL +W +R + GSD AALA Sbjct: 115 GKTTTIAKLGQYYQSKGRSVMFCAGDTFRAAGGAQLGLWGERLGIPVIQGPEGSDPAALA 174 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A +A+ +D+L++DTAGRLH LM + K+ R + + DP P V VLDA TG Sbjct: 175 FDAASARKARGLDLLLVDTAGRLHTKHNLMEELAKVKRSIAKADPGEPGEVWLVLDAVTG 234 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QN L Q + FH G TG+I+TK+DGTA+GG L+PIV T +P+ F+GVGE +DL+PF Sbjct: 235 QNGLEQAKKFHQTVGLTGVIVTKLDGTAKGGVLVPIVRTLGVPIKFIGVGEKADDLQPFD 294 Query: 303 AKDFSAVITGC 313 A +F + G Sbjct: 295 AGEFVEALLGA 305 >gi|294618512|ref|ZP_06698074.1| signal recognition particle-docking protein FtsY [Enterococcus faecium E1679] gi|291595212|gb|EFF26543.1| signal recognition particle-docking protein FtsY [Enterococcus faecium E1679] Length = 332 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 98/194 (50%), Positives = 133/194 (68%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 VIL VGVNGVGKTT IGKL+ + + G KV++AA DTFR+ AIDQL +W +R + V Sbjct: 127 VILFVGVNGVGKTTSIGKLAHQFKNEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRG 186 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 G D AA+ ++A ++A+ ++ DVL++DTAGRL N LM + K+ RV++R P AP Sbjct: 187 NAGGDPAAVVFDALERAKIEQADVLLVDTAGRLQNKVNLMNELEKIKRVIQRELPEAPQE 246 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 L VLDATTGQNA+ Q + F TGL++TK+DGTA+GG ++ I +PV +G+G Sbjct: 247 TLLVLDATTGQNAMVQAKQFKETTDVTGLVLTKLDGTAKGGIVLAIRNELHLPVKLVGLG 306 Query: 293 EGINDLEPFVAKDF 306 EGI+DLEPF DF Sbjct: 307 EGIDDLEPFDPNDF 320 >gi|21673041|ref|NP_661106.1| signal recognition particle-docking protein FtsY [Chlorobium tepidum TLS] gi|21646108|gb|AAM71448.1| signal recognition particle-docking protein FtsY [Chlorobium tepidum TLS] Length = 316 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 122/300 (40%), Positives = 180/300 (60%), Gaps = 23/300 (7%) Query: 27 KLKEGITDIISSRR------------LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +LKEG+T + R +DD EELE++L+ +D+GV IV+ + + Sbjct: 11 RLKEGLTKTRDTLRDKLAFVSRGKTEVDDEFLEELENILVAADVGVETTLDIVDAVTVRS 70 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPL------SKPFNWD--FSHRPHVILVVGVNGVGKTT 126 K R +++E++ + L P ++D S +P+VI++VGVNG GKTT Sbjct: 71 KGK---TYRSEEELNEMVMGEIRNLLVESGHEHPVDFDAPLSAKPYVIMIVGVNGAGKTT 127 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 + KL+ AG KV++AA DTFR+AA +QLKIWADR + G+D A++ +++ Sbjct: 128 TVAKLAHNYDKAGKKVVIAAADTFRAAAYEQLKIWADRAGVPIIGQGQGADPASVVFDSV 187 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A +K DV+++DTAGRLHN S LM + K++RV K+ P APH VL VLD TTGQNA+ Sbjct: 188 SSAVSKGTDVVLVDTAGRLHNKSHLMEELAKIMRVAKKKIPEAPHEVLLVLDGTTGQNAV 247 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +Q F TGL+MTK+DGT++GG ++ I +PV ++GVGE I+DL+ F K F Sbjct: 248 QQAREFTKFVNVTGLVMTKLDGTSKGGIVLSISRELNLPVKYIGVGEKIDDLQLFDRKSF 307 >gi|212696165|ref|ZP_03304293.1| hypothetical protein ANHYDRO_00701 [Anaerococcus hydrogenalis DSM 7454] gi|212676794|gb|EEB36401.1| hypothetical protein ANHYDRO_00701 [Anaerococcus hydrogenalis DSM 7454] Length = 367 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 125/302 (41%), Positives = 186/302 (61%), Gaps = 9/302 (2%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 L + KL+KG T + + ++ ++ ++DD + +ELE++LI +DIG+ +IV+E Sbjct: 63 LGFFEKLSKGLTKTREQFSSKLKNLFTANVKIDDDLYDELEEILISADIGMQSTIEIVDE 122 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF-----SHRPHVILVVGVNGVGK 124 L K K+ S++ + L+ +++ N D + + VILV+GVNGVGK Sbjct: 123 L--KDKIKERSIKNA-DQIFPLLKEIMEDKLDEKNLDNELLISNDKLSVILVIGVNGVGK 179 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+ + G KV LAA DTFR+AAI+QL WA ++ + + GSD +A+ ++ Sbjct: 180 TTTIGKLAHNLKKEGHKVTLAAADTFRAAAIEQLDSWAKESNTQMIAHKEGSDPSAVIFD 239 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + A+A DVLI DTAGRLHN LM + K+ R + +A L VLDATTGQN Sbjct: 240 AIQAAKANGSDVLICDTAGRLHNKKNLMNELEKINRTISTHANNANRENLLVLDATTGQN 299 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ Q+ F V TGLI+TK+DGTA+GG + P+ V ++PV ++GVGEGI++LE F +K Sbjct: 300 AISQLREFKNVCEITGLILTKLDGTAKGGVIFPLQVELEVPVKYIGVGEGIDNLEKFDSK 359 Query: 305 DF 306 F Sbjct: 360 SF 361 >gi|223932803|ref|ZP_03624800.1| signal recognition particle-docking protein FtsY [Streptococcus suis 89/1591] gi|302023940|ref|ZP_07249151.1| Signal recognition particle GTPase [Streptococcus suis 05HAS68] gi|330832992|ref|YP_004401817.1| signal recognition particle-docking protein FtsY [Streptococcus suis ST3] gi|223898512|gb|EEF64876.1| signal recognition particle-docking protein FtsY [Streptococcus suis 89/1591] gi|329307215|gb|AEB81631.1| signal recognition particle-docking protein FtsY [Streptococcus suis ST3] Length = 424 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 127/305 (41%), Positives = 178/305 (58%), Gaps = 13/305 (4%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 SE + R L K +L E + R +D+ EELE++LI SD+GV VA + Sbjct: 118 SEQDKYQRTLKKTRTGFGARLNEFFANF---RSVDEEFFEELEEMLILSDVGVQVASTLT 174 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH------VILVVGVNG 121 EEL RY + + ++ +I + L+ + + + FS R + V+L VGVNG Sbjct: 175 EEL---RYEAKLQNAKKTDELRRVIIEKLVDIYEK-DGQFSERINFQDDLTVMLFVGVNG 230 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT IGKL+ K AG KVML A DTFR+ A+ QL W R V SD A++ Sbjct: 231 VGKTTSIGKLAYKYKQAGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGPEKSDPASV 290 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++ K+A A+ VD+L+IDTAGRL N LMA + K+ R++KR P APH L LDA+T Sbjct: 291 VFDGVKRAVAEGVDILMIDTAGRLQNKENLMAELEKIGRIIKRTLPDAPHETLLALDAST 350 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL Q + F + TGL++TK+DGTA+GG ++ I IPV +G GE I+D+ F Sbjct: 351 GQNALSQAKEFAKITPLTGLVLTKLDGTAKGGVVLAIRQELDIPVKLIGFGEKIDDIGEF 410 Query: 302 VAKDF 306 +++F Sbjct: 411 KSEEF 415 >gi|222112013|ref|YP_002554277.1| signal recognition particle-docking protein ftsy [Acidovorax ebreus TPSY] gi|221731457|gb|ACM34277.1| signal recognition particle-docking protein FtsY [Acidovorax ebreus TPSY] Length = 382 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 126/301 (41%), Positives = 181/301 (60%), Gaps = 11/301 (3%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W+ +L G T I + + +++D + +ELE+ L+ +D GV Q ++E+L Sbjct: 88 WMDRLKSGLRKTG----SSIATVFTGTQINDALYDELEEALLMADTGVKATQHLLEDL-- 141 Query: 73 KRYAKDVSVQR---VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 KR K+ V +++ + +L PL KP H P VI+V GVNG GKTT IG Sbjct: 142 KRRVKETKTTEPAAVKGLLADALADLLRPLEKPLVIG-EHTPTVIMVAGVNGAGKTTSIG 200 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K ++D G V+LAA DTFR+AA +QL +WA R + + V E G D AA++++A Sbjct: 201 KLTKHLADHGESVLLAAADTFRAAAREQLGVWATRNTVEIVSQE-GGDPAAVSFDAVTAG 259 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ DV+++DTAGRL LM + K+ RV+ + D APH VL V+D TGQNAL QV Sbjct: 260 RARGKDVVLVDTAGRLPTQLHLMEELKKIRRVVTKADASAPHEVLLVIDGNTGQNALAQV 319 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 F TGLI+TK+DGTA+GG L I +PVYF+GVGE + DLE F A++F+ Sbjct: 320 RAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKVEDLETFSAREFAQA 379 Query: 310 I 310 + Sbjct: 380 L 380 >gi|260558341|ref|ZP_05830537.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecium C68] gi|293556821|ref|ZP_06675382.1| signal recognition particle-docking protein FtsY [Enterococcus faecium E1039] gi|260075515|gb|EEW63821.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecium C68] gi|291600905|gb|EFF31196.1| signal recognition particle-docking protein FtsY [Enterococcus faecium E1039] Length = 332 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 98/194 (50%), Positives = 132/194 (68%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 VIL VGVNGVGKTT IGKL+ + G KV++AA DTFR+ AIDQL +W +R + V Sbjct: 127 VILFVGVNGVGKTTSIGKLAHQFKKEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRG 186 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 G D AA+ ++A ++A+ ++ DVL++DTAGRL N LM + K+ RV++R P AP Sbjct: 187 NAGGDPAAVVFDALERAKTEQADVLLVDTAGRLQNKVNLMNELEKIKRVIQRELPEAPQE 246 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 L VLDATTGQNA+ Q + F TGL++TK+DGTA+GG ++ I +PV +G+G Sbjct: 247 TLLVLDATTGQNAMVQAKQFKETTDVTGLVLTKLDGTAKGGIVLAIRNELHLPVKLVGLG 306 Query: 293 EGINDLEPFVAKDF 306 EGI+DLEPF DF Sbjct: 307 EGIDDLEPFDPNDF 320 >gi|225025909|ref|ZP_03715101.1| hypothetical protein EUBHAL_00145 [Eubacterium hallii DSM 3353] gi|224956695|gb|EEG37904.1| hypothetical protein EUBHAL_00145 [Eubacterium hallii DSM 3353] Length = 313 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 123/303 (40%), Positives = 183/303 (60%), Gaps = 10/303 (3%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67 E + +L G T + G+ I ++DD EELE++LI D+GV I+ Sbjct: 3 EKKGFFSRLVSGLTKTRKNIASGLDSIFHGFSKIDDDFYEELEEILIMGDLGVDTTMNII 62 Query: 68 EEL---LTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 E+L + + + K+ +++L D I K M + + +++ +R V+LV+GVNGVG Sbjct: 63 EDLQERVKEEHIKEPAECRQLLID----IIKKQMEVDET-AYEYENRTSVVLVIGVNGVG 117 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+ ++ KV++AA DTFR+AAI+QL W++R D + + GSD AA+ Y Sbjct: 118 KTTTIGKLAAQLKSQNKKVIMAAADTFRAAAIEQLTEWSNRAGVDIIAQQEGSDPAAVIY 177 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A + A+++ DVL+ DTAGRLHN LM + K+ RV++R P A L VLD TTGQ Sbjct: 178 DACQAAKSRHADVLLCDTAGRLHNKKNLMNELSKIRRVIEREFPEAYLETLIVLDGTTGQ 237 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NAL Q + F V+ +G+++TK+DGTA+GG I I IPV ++G+GE I DL+ F A Sbjct: 238 NALVQAKQFKEVSDISGIVLTKLDGTAKGGIAIAIQAELGIPVKYIGIGEKIEDLQKFDA 297 Query: 304 KDF 306 F Sbjct: 298 DSF 300 >gi|229140491|ref|ZP_04269046.1| Cell division protein ftsY [Bacillus cereus BDRD-ST26] gi|229197957|ref|ZP_04324672.1| Cell division protein ftsY [Bacillus cereus m1293] gi|228585536|gb|EEK43639.1| Cell division protein ftsY [Bacillus cereus m1293] gi|228643052|gb|EEK99328.1| Cell division protein ftsY [Bacillus cereus BDRD-ST26] Length = 260 Score = 199 bits (505), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 103/227 (45%), Positives = 149/227 (65%), Gaps = 8/227 (3%) Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPH-------VILVVGVNGVGKTTVIGKLSKKMSDAG 139 +V +I + L+ + K + DF++ + V+L VGVNGVGKTT IGK++ K G Sbjct: 21 EVQAVISEKLIEIYKG-DSDFTNEINEQKDGLTVVLFVGVNGVGKTTTIGKMAHKFKSEG 79 Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199 V+LAAGDTFR+ AI+QL++W DR + + GSD AA+ Y+A + A+A+KVDVL+ Sbjct: 80 KSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSDPAAVMYDAVQAAKARKVDVLLC 139 Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 DTAGRL N LM + K+ RV++R P APH VL V+DATTGQN L Q + F T Sbjct: 140 DTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVIDATTGQNGLSQAKTFREATNVT 199 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G+++TK+DGTA+GG ++ I +PV F+G+GE ++DL+ F + + Sbjct: 200 GIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDLQQFDPEQY 246 >gi|169342687|ref|ZP_02863728.1| signal recognition particle-docking protein FtsY [Clostridium perfringens C str. JGS1495] gi|169299193|gb|EDS81263.1| signal recognition particle-docking protein FtsY [Clostridium perfringens C str. JGS1495] Length = 304 Score = 199 bits (505), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 127/294 (43%), Positives = 185/294 (62%), Gaps = 3/294 (1%) Query: 16 KLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73 KL G T L + I + ++ + +DD + EELE+ LI SDIG+ +I++ L K Sbjct: 8 KLKTGLTKTRDNLTDKINEALNLAVTIDDDMYEELEEALIMSDIGMDTTIEIIDRLKAKI 67 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 R K V+ V + E+I +M++ + + + V+L++GVNGVGKTT IGK++ Sbjct: 68 RKEKINDVEMVKPALKEVIAEMMLEGDSEEEEEDNEK-KVMLIIGVNGVGKTTSIGKIAA 126 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 + + G KV+LAA DTFR+AAIDQL IW+ R + D V + GSD AA+ ++A + A+A+ Sbjct: 127 RNKNNGKKVLLAAADTFRAAAIDQLDIWSQRANVDIVKHQEGSDPAAVVFDAVQAAKARD 186 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 VD+LI DTAGRLHN LM + K+ R++ R L VLD TTGQNA+ Q + F Sbjct: 187 VDLLICDTAGRLHNKKNLMDELAKINRIIDRELGDRKKETLLVLDGTTGQNAVIQAKQFM 246 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 G+I+TK+DGTA+GG +I I T IPV ++GVGEG++DL+ F AK+F+ Sbjct: 247 EACPIDGIILTKLDGTAKGGVVISIKNTLNIPVKYIGVGEGVDDLQKFNAKEFA 300 >gi|154483579|ref|ZP_02026027.1| hypothetical protein EUBVEN_01283 [Eubacterium ventriosum ATCC 27560] gi|149735489|gb|EDM51375.1| hypothetical protein EUBVEN_01283 [Eubacterium ventriosum ATCC 27560] Length = 317 Score = 199 bits (505), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 125/299 (41%), Positives = 178/299 (59%), Gaps = 8/299 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 ++ +KL G T + + I + +DD EELE++LI SDIGV ++I++ L Sbjct: 3 NFFKKLVSGLTKTRNNIVSNLNSIFNGFSSIDDDFYEELEEILIMSDIGVNTTEEILDNL 62 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKML---MPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 K K+ ++ + + EL+ K + M L + +DF + VIL++GVNGVGKTT Sbjct: 63 --KEQVKENKIKEPI-ECKELLIKNIEEQMDLGENA-YDFENEKSVILMIGVNGVGKTTS 118 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ + + G KV+LAA DTFR+AA DQLK WA+R + D V GSD ++ Y+A Sbjct: 119 IGKLASQFKNNGKKVVLAAADTFRAAATDQLKEWANRANVDIVMGAEGSDPGSVLYDAIS 178 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ K D+L+ DTAGRLHN LM + K+ R++++ VLDATTGQNAL Sbjct: 179 SAKNKNADILLCDTAGRLHNKKNLMEELKKLDRIIEKEYNGCRRENFIVLDATTGQNALA 238 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q F TG+I+TKMDG+A+GG I I IPV ++GVGE I+DL+ F + F Sbjct: 239 QARQFKECTDITGVILTKMDGSAKGGIAIAIQSELGIPVKYIGVGEQIDDLQKFDSHQF 297 >gi|221194823|ref|ZP_03567880.1| signal recognition particle-docking protein FtsY [Atopobium rimae ATCC 49626] gi|221185727|gb|EEE18117.1| signal recognition particle-docking protein FtsY [Atopobium rimae ATCC 49626] Length = 301 Score = 199 bits (505), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 102/268 (38%), Positives = 168/268 (62%), Gaps = 6/268 (2%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 ++LED L+ D+G VA ++ + L + ++++ L S LI ++ + Sbjct: 34 DDLEDTLVMGDMGAEVAIRVTDHLREQAAKENLTRSHQLR--SALIERLSEEFPRASRDP 91 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 F P ++L VG+NG GKTT +GKL+ + G++V++ DTFR+AAI+QL++W R+ Sbjct: 92 FVDTPSIVLFVGINGAGKTTTVGKLAGRAQSDGVRVLIGGADTFRAAAIEQLEVWGSRSG 151 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V E G+D A++ Y+ ++A+ + ++++IDTAGRLH +S LM + K++ V ++ Sbjct: 152 VEVVTRERGADPASVCYDVIEEAEKRGSELVLIDTAGRLHTSSDLMRELAKVVSVTRKRA 211 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK--I 284 P SV+ V+DATTGQN L Q + F+ GLI+TK+DGTA+GG I + ++H+ + Sbjct: 212 GITPVSVVLVIDATTGQNGLNQAKEFNDALDLDGLIVTKLDGTAKGG--IALAISHQLNL 269 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITG 312 P+Y +GVGE I+DL+ F A DF A + G Sbjct: 270 PIYRIGVGESIDDLQTFDAHDFCAALVG 297 >gi|153853251|ref|ZP_01994660.1| hypothetical protein DORLON_00645 [Dorea longicatena DSM 13814] gi|149754037|gb|EDM63968.1| hypothetical protein DORLON_00645 [Dorea longicatena DSM 13814] Length = 317 Score = 199 bits (505), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 128/299 (42%), Positives = 186/299 (62%), Gaps = 6/299 (2%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + KL G T + G+ I R+DD EELE++LI D+GV I+++ Sbjct: 1 MGFFEKLVAGLGKTRDNIVSGMDSIFHGFSRIDDDFYEELEEVLIMGDLGVQATYDILDD 60 Query: 70 LLTKRYAKDVSVQRVLYDVSELIH--KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L K K+ ++ + LI K M + + ++F +R V++V+GVNGVGKTT Sbjct: 61 LKAK--VKEKHIKEPMECRELLIESIKEQMDIGET-AYEFENRTSVVMVIGVNGVGKTTT 117 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ K+ KV++AA DTFR+AA +QLK WA+R+ A+ + + GSD A++ ++A Sbjct: 118 IGKLAGKLRAENKKVVIAAADTFRAAAGEQLKEWANRSQAELIGGQEGSDPASVVFDAVA 177 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+A+ DVL+IDTAGRLHN LM + KM +++ R P A L VLDATTGQNAL+ Sbjct: 178 AAKARHADVLMIDTAGRLHNKKNLMEELRKMNKIIDREFPEAYRETLVVLDATTGQNALQ 237 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q + F+ VA TG+++TKMDGTA+GG + I +PV ++GVGE I+DL+ F A DF Sbjct: 238 QAKEFNDVAEITGIVLTKMDGTAKGGIAVAIHAELGVPVKYIGVGETIDDLQKFNADDF 296 >gi|227824340|ref|ZP_03989172.1| signal recognition particle-docking protein ftsY [Acidaminococcus sp. D21] gi|226904839|gb|EEH90757.1| signal recognition particle-docking protein ftsY [Acidaminococcus sp. D21] Length = 304 Score = 199 bits (505), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 122/299 (40%), Positives = 180/299 (60%), Gaps = 5/299 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +S++ +L +G T E + D++ S LD+ +ELE +L+ D+G+ +KI++ Sbjct: 1 MSFVEELRQGLEKTRKNFTERMEDLVGISVDLDEDFMDELEMILVAGDVGIKTTEKIMQA 60 Query: 70 LLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L +++ S L + + I ML N F P ++LVVGVNGVGKTT I Sbjct: 61 LRKAAATREIKSPAEALPFIKQYIADMLTVKGPRMN--FKGHPTIVLVVGVNGVGKTTTI 118 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SEIGSDAAALAYEAFK 187 GKL+ G KVM AA DTFR+ A++QLKIW ++ + +IG+D AA+ Y+ K Sbjct: 119 GKLANYYRLMGYKVMCAAADTFRAGAVEQLKIWGEKAQVPVISHGDIGADPAAVVYDGVK 178 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A A+ +DVL +DTAGRLHN + LM + KM RV+++ P PH L VLDATTGQNA+ Sbjct: 179 AAMARHIDVLFVDTAGRLHNKTNLMKELDKMYRVIRKEVPDGPHETLLVLDATTGQNAIT 238 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++F A TG+++TK+DGTA+GG ++ I + V ++G+GEG+ D PF K F Sbjct: 239 QAKIFLETAHVTGVVLTKLDGTAKGGVVVAIKEELGLDVKWIGIGEGMMDFRPFDPKVF 297 >gi|121595813|ref|YP_987709.1| signal recognition particle-docking protein FtsY [Acidovorax sp. JS42] gi|120607893|gb|ABM43633.1| signal recognition particle-docking protein FtsY [Acidovorax sp. JS42] Length = 382 Score = 199 bits (505), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 126/301 (41%), Positives = 181/301 (60%), Gaps = 11/301 (3%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W+ +L G T I + + +++D + +ELE+ L+ +D GV Q ++E+L Sbjct: 88 WMDRLKSGLRKTG----SSIATVFTGTQINDALYDELEEALLMADTGVKATQHLLEDL-- 141 Query: 73 KRYAKDVSVQR---VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 KR K+ V +++ + +L PL KP H P VI+V GVNG GKTT IG Sbjct: 142 KRRVKETKTTEPAAVKGLLADALADLLRPLEKPLVIG-EHTPTVIMVAGVNGAGKTTSIG 200 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K ++D G V+LAA DTFR+AA +QL +WA R + + V E G D AA++++A Sbjct: 201 KLTKHLADHGESVLLAAADTFRAAAREQLGVWATRNTVEIVSQE-GGDPAAVSFDAVTAG 259 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ DV+++DTAGRL LM + K+ RV+ + D APH VL V+D TGQNAL QV Sbjct: 260 RARGKDVVLVDTAGRLPTQLHLMEELKKIRRVVTKADASAPHEVLLVIDGNTGQNALAQV 319 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 F TGLI+TK+DGTA+GG L I +PVYF+GVGE + DLE F A++F+ Sbjct: 320 RAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKVEDLETFSAREFAQA 379 Query: 310 I 310 + Sbjct: 380 L 380 >gi|313906052|ref|ZP_07839404.1| signal recognition particle-docking protein FtsY [Eubacterium cellulosolvens 6] gi|313469097|gb|EFR64447.1| signal recognition particle-docking protein FtsY [Eubacterium cellulosolvens 6] Length = 307 Score = 199 bits (505), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 118/312 (37%), Positives = 179/312 (57%), Gaps = 14/312 (4%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + + ++L G + ++E + + +DD E LE+ L+ SD+G+ Q ++E L Sbjct: 1 MGFFKRLFSGLTKSRDSIQENLDEAFGCSEIDDEFYENLEEALVASDMGIETTQTVIENL 60 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPHVILVVGVNGVGKT 125 +D+ + ++ M+ + N + F R V+L++GVNGVGKT Sbjct: 61 ------QDIVADLDIKKPADCKKYMVDCFRQQMNVGQTDYSFEDRKSVVLIIGVNGVGKT 114 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T +GKL+ K G KVM+AA DTFR+AAI QL+ WA+R + + + G+D A++ Y+A Sbjct: 115 TTVGKLAAKYKATGKKVMIAAADTFRAAAIPQLETWANRAGVEIIEGQEGADPASVVYDA 174 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+A+ D+L+IDTAGRLHN LM + K+ R+L + P A L VLD TTGQNA Sbjct: 175 ISAAKARDTDMLLIDTAGRLHNKKNLMEELRKIYRILAKSYPEASLETLLVLDGTTGQNA 234 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + Q F VA TGL++TK+DGTA+GG + + IPV ++GVGE ++DL+ F D Sbjct: 235 ILQARSFAEVADITGLVITKLDGTAKGGIAVAVQSELDIPVKYIGVGEQLDDLQKF---D 291 Query: 306 FSAVITGCLDYG 317 SA + D G Sbjct: 292 PSAYVDALFDTG 303 >gi|281411789|ref|YP_003345868.1| signal recognition particle-docking protein FtsY [Thermotoga naphthophila RKU-10] gi|281372892|gb|ADA66454.1| signal recognition particle-docking protein FtsY [Thermotoga naphthophila RKU-10] Length = 294 Score = 199 bits (505), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 129/294 (43%), Positives = 177/294 (60%), Gaps = 9/294 (3%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 L KG T + ++ ++LDD REELE+LLI++D+GV + I+E L K Sbjct: 7 LKKGLQKTKETFFGRVVKLLKGKKLDDETREELEELLIQADVGVETTEYILERLEEKDGD 66 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136 S++ ++ ++ K+ +P PF VI+VVGVNG GKTT GKL+K Sbjct: 67 ALESLKEIILEILNFDTKLNVPPEPPF---------VIMVVGVNGTGKTTSCGKLAKMFV 117 Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196 D G V+LAA DTFR+AAI+QLKIW +R A + G+D AA+A++A A A+ DV Sbjct: 118 DEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKDV 177 Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256 +IIDTAGRLH LM + K+ RV+K+ P APH L V+DATTGQN L Q ++F Sbjct: 178 VIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV 237 Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 TG+I+TK+DGTA+GG + I IP+ F+GVGE DL PF + F V+ Sbjct: 238 NVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVL 291 >gi|228986990|ref|ZP_04147116.1| Cell division protein ftsY [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772768|gb|EEM21208.1| Cell division protein ftsY [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 260 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 103/227 (45%), Positives = 149/227 (65%), Gaps = 8/227 (3%) Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPH-------VILVVGVNGVGKTTVIGKLSKKMSDAG 139 +V +I + L+ + K + DF++ + V+L VGVNGVGKTT IGK++ K G Sbjct: 21 EVQAVISEKLIEIYKG-DSDFTNEINMQKDGLTVVLFVGVNGVGKTTTIGKMAHKFKSEG 79 Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199 V+LAAGDTFR+ AI+QL++W DR + + GSD AA+ Y+A + A+A+KVDVL+ Sbjct: 80 KSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSDPAAVMYDAVQAAKARKVDVLLC 139 Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 DTAGRL N LM + K+ RV++R P APH VL V+DATTGQN L Q + F T Sbjct: 140 DTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVIDATTGQNGLSQAKTFREATNVT 199 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G+++TK+DGTA+GG ++ I +PV F+G+GE ++DL+ F + + Sbjct: 200 GIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDLQQFDPEQY 246 >gi|15643336|ref|NP_228380.1| cell division protein FtsY [Thermotoga maritima MSB8] gi|170288167|ref|YP_001738405.1| signal recognition particle-docking protein FtsY [Thermotoga sp. RQ2] gi|4981086|gb|AAD35655.1|AE001731_12 cell division protein FtsY [Thermotoga maritima MSB8] gi|170175670|gb|ACB08722.1| signal recognition particle-docking protein FtsY [Thermotoga sp. RQ2] Length = 294 Score = 198 bits (504), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 129/294 (43%), Positives = 177/294 (60%), Gaps = 9/294 (3%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 L KG T + ++ ++LDD REELE+LLI++D+GV + I+E L K Sbjct: 7 LKKGLQKTKETFFGRVVKLLKGKKLDDETREELEELLIQADVGVETTEYILERLEEKDGD 66 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136 S++ ++ ++ K+ +P PF VI+VVGVNG GKTT GKL+K Sbjct: 67 ALESLKEIILEILNFDTKLNVPPEPPF---------VIMVVGVNGTGKTTSCGKLAKMFV 117 Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196 D G V+LAA DTFR+AAI+QLKIW +R A + G+D AA+A++A A A+ DV Sbjct: 118 DEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKDV 177 Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256 +IIDTAGRLH LM + K+ RV+K+ P APH L V+DATTGQN L Q ++F Sbjct: 178 VIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV 237 Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 TG+I+TK+DGTA+GG + I IP+ F+GVGE DL PF + F V+ Sbjct: 238 NVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVL 291 >gi|312877058|ref|ZP_07737031.1| signal recognition particle-docking protein FtsY [Caldicellulosiruptor lactoaceticus 6A] gi|311796199|gb|EFR12555.1| signal recognition particle-docking protein FtsY [Caldicellulosiruptor lactoaceticus 6A] Length = 301 Score = 198 bits (504), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 125/297 (42%), Positives = 186/297 (62%), Gaps = 4/297 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L +G + T E + ++ S +++DD + EELE++L+ SD+GV +QKI+E Sbjct: 1 MGFFDRLKEGLSKTKKNFTEKVESLLKSFKQVDDELFEELEEVLVLSDVGVKTSQKIIEN 60 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L K + +S V EL+ + ++ + N P +IL+VGVNGVGKTT IG Sbjct: 61 LKEKVKKEKISATEA---VKELLKEEMLSIINLENKLSEKYPLIILMVGVNGVGKTTSIG 117 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 K++ + G KV++AA DTFR+AA +QL+IWA R D + GSD AA+ ++ + Sbjct: 118 KIANLLKSNGKKVLIAAADTFRAAAAEQLEIWAKRVGCDIIKHVEGSDPAAVVFDGIQAM 177 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+K DVLI+DTAGRLH L+ + K+ RV+ + P A L V+DATTGQNAL Q Sbjct: 178 RARKADVLIVDTAGRLHTKKNLIEELKKIDRVINQQMPEASKETLLVIDATTGQNALNQA 237 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F +G+++TK+DGTA+GG +I I KIPV F+GVGE I+DL+ F AK+F Sbjct: 238 KEFDQAVNISGIVLTKLDGTAKGGIIISICDELKIPVKFVGVGEKIDDLQYFNAKEF 294 >gi|55670465|pdb|1VMA|A Chain A, Crystal Structure Of Cell Division Protein Ftsy (Tm0570) From Thermotoga Maritima At 1.60 A Resolution gi|55670466|pdb|1VMA|B Chain B, Crystal Structure Of Cell Division Protein Ftsy (Tm0570) From Thermotoga Maritima At 1.60 A Resolution Length = 306 Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 129/294 (43%), Positives = 177/294 (60%), Gaps = 9/294 (3%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 L KG T + ++ ++LDD REELE+LLI++D+GV + I+E L K Sbjct: 19 LKKGLQKTKETFFGRVVKLLKGKKLDDETREELEELLIQADVGVETTEYILERLEEKDGD 78 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136 S++ ++ ++ K+ +P PF VI+VVGVNG GKTT GKL+K Sbjct: 79 ALESLKEIILEILNFDTKLNVPPEPPF---------VIMVVGVNGTGKTTSCGKLAKMFV 129 Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196 D G V+LAA DTFR+AAI+QLKIW +R A + G+D AA+A++A A A+ DV Sbjct: 130 DEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKDV 189 Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256 +IIDTAGRLH LM + K+ RV+K+ P APH L V+DATTGQN L Q ++F Sbjct: 190 VIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV 249 Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 TG+I+TK+DGTA+GG + I IP+ F+GVGE DL PF + F V+ Sbjct: 250 NVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVL 303 >gi|328952743|ref|YP_004370077.1| signal recognition particle-docking protein FtsY [Desulfobacca acetoxidans DSM 11109] gi|328453067|gb|AEB08896.1| signal recognition particle-docking protein FtsY [Desulfobacca acetoxidans DSM 11109] Length = 405 Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 99/203 (48%), Positives = 134/203 (66%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +PHV++V+GVNGVGKTT I KL+ + G KV+L A DTFR+AAI+QL+IW R A Sbjct: 203 KPHVVMVIGVNGVGKTTTIAKLAHHDLEQGEKVLLVAADTFRAAAIEQLEIWGQRAGAAV 262 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + + GSD AA+ ++ A A++VD + IDTAGRLH LM + K+ R + A Sbjct: 263 IKQKTGSDPAAVVFDGLAAALARRVDKVYIDTAGRLHTKVNLMEELKKVARTAAKQIEGA 322 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH VL VLDATTGQNA+ Q +FH G TG+IMTK+DGTA+GG + +V +P+ F+ Sbjct: 323 PHEVLLVLDATTGQNAINQARLFHEAIGVTGIIMTKLDGTAKGGVALGVVQETGLPLQFI 382 Query: 290 GVGEGINDLEPFVAKDFSAVITG 312 GVGE ++DL PF + + I G Sbjct: 383 GVGEQMDDLRPFEPEAYLEAILG 405 >gi|312793351|ref|YP_004026274.1| signal recognition particle-docking protein ftsy [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180491|gb|ADQ40661.1| signal recognition particle-docking protein FtsY [Caldicellulosiruptor kristjanssonii 177R1B] Length = 301 Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 124/297 (41%), Positives = 187/297 (62%), Gaps = 4/297 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L +G + T E + ++ S +++DD + EELE++L+ SD+GV +QKI+E Sbjct: 1 MGFFDRLKEGLSKTKKNFTEKVESLLKSFKQVDDELFEELEEVLVLSDVGVKTSQKIIEN 60 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L K + +S V EL+ + ++ + N P +IL+VGVNGVGKTT IG Sbjct: 61 LKEKVKKEKISATEA---VKELLKEEMLSIINLENKLSEKYPLIILMVGVNGVGKTTSIG 117 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 K++ + G KV++AA DTFR+AA +QL+IWA R D + GSD AA+ ++ + Sbjct: 118 KIANLLKSNGKKVLIAAADTFRAAAAEQLEIWAKRVGCDIIKHVEGSDPAAVVFDGIQAM 177 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+K DVLI+DTAGRLH L+ + K+ RV+ + P A L V+DATTGQNAL Q Sbjct: 178 RARKADVLIVDTAGRLHTKKNLIEELKKIDRVINQQMPEASKETLLVIDATTGQNALNQA 237 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ +G+++TK+DGTA+GG +I I +IPV F+GVGE I+DL+ F AK+F Sbjct: 238 KEFNQAVNISGIVLTKLDGTAKGGIIISICDELRIPVKFVGVGEKIDDLQYFNAKEF 294 >gi|110800008|ref|YP_696402.1| signal recognition particle-docking protein FtsY [Clostridium perfringens ATCC 13124] gi|168207934|ref|ZP_02633939.1| signal recognition particle-docking protein FtsY [Clostridium perfringens E str. JGS1987] gi|168214192|ref|ZP_02639817.1| signal recognition particle-docking protein FtsY [Clostridium perfringens CPE str. F4969] gi|182625848|ref|ZP_02953614.1| signal recognition particle-docking protein FtsY [Clostridium perfringens D str. JGS1721] gi|110674655|gb|ABG83642.1| signal recognition particle-docking protein FtsY [Clostridium perfringens ATCC 13124] gi|170660748|gb|EDT13431.1| signal recognition particle-docking protein FtsY [Clostridium perfringens E str. JGS1987] gi|170714304|gb|EDT26486.1| signal recognition particle-docking protein FtsY [Clostridium perfringens CPE str. F4969] gi|177908882|gb|EDT71374.1| signal recognition particle-docking protein FtsY [Clostridium perfringens D str. JGS1721] Length = 304 Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 185/297 (62%), Gaps = 3/297 (1%) Query: 16 KLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73 KL G T L + I + ++ + +DD + EELE+ LI SDIG+ +I++ L K Sbjct: 8 KLKTGLTKTRDNLTDKINEALNLAVTIDDDMYEELEEALIMSDIGMDTTVEIIDRLKAKI 67 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 R K V+ V + E+I +M++ + + + V+L++GVNGVGKTT IGK++ Sbjct: 68 RKEKINDVEMVKPALKEVIAEMMLEGDSEEEEEDNEK-KVMLIIGVNGVGKTTSIGKIAA 126 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 + + G KV+LAA DTFR+AAIDQL IW+ R + D V + GSD AA+ ++A + A+A+ Sbjct: 127 RNKNNGKKVLLAAADTFRAAAIDQLDIWSQRANVDIVKHQEGSDPAAVVFDAVQAAKARD 186 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 VD+LI DTAGRLHN LM + K+ R++ R L VLD TTGQNA+ Q + F Sbjct: 187 VDLLICDTAGRLHNKKNLMDELAKINRIIDRELGDRKKETLLVLDGTTGQNAVIQAKQFM 246 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 G+I+TK+DGTA+GG +I I T IPV ++GVGEG+ DL+ F AK+F+ + Sbjct: 247 EACPIDGIILTKLDGTAKGGVVISIKNTLNIPVKYIGVGEGVEDLQKFNAKEFAEAL 303 >gi|110802156|ref|YP_699002.1| signal recognition particle-docking protein FtsY [Clostridium perfringens SM101] gi|110682657|gb|ABG86027.1| signal recognition particle-docking protein FtsY [Clostridium perfringens SM101] Length = 304 Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 127/294 (43%), Positives = 184/294 (62%), Gaps = 3/294 (1%) Query: 16 KLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73 KL G T L + I + ++ + +DD + EELE+ LI SDIG+ +I++ L K Sbjct: 8 KLKTGLTKTRDNLTDKINEALNLAVTIDDDMYEELEEALIMSDIGMDTTIEIIDRLKAKI 67 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 R K V+ V + E+I +M++ + + + V+L++GVNGVGKTT IGK++ Sbjct: 68 RKEKINDVEMVKPALKEVIAEMMLEGDSEEEEEDNEK-KVMLIIGVNGVGKTTSIGKIAA 126 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 + + G KV+LAA DTFR+AAIDQL IW+ R + D V + GSD AA+ ++A + A+A+ Sbjct: 127 RNKNNGKKVLLAAADTFRAAAIDQLDIWSQRANVDIVKHQEGSDPAAVVFDAVQAAKARD 186 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 VD+LI DTAGRLHN LM + K+ R++ R L VLD TTGQNA+ Q + F Sbjct: 187 VDLLICDTAGRLHNKKNLMDELAKINRIIDRELGDRKKETLLVLDGTTGQNAVIQAKQFM 246 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 G+I+TK+DGTA+GG +I I T IPV ++GVGEG+ DL+ F AK+F+ Sbjct: 247 EACPIDGIILTKLDGTAKGGVVISIKNTLNIPVKYIGVGEGVEDLQKFNAKEFA 300 >gi|18310697|ref|NP_562631.1| signal recognition particle-docking protein FtsY [Clostridium perfringens str. 13] gi|18145378|dbj|BAB81421.1| signal recognition particle protein [Clostridium perfringens str. 13] Length = 304 Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 127/294 (43%), Positives = 184/294 (62%), Gaps = 3/294 (1%) Query: 16 KLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73 KL G T L + I + ++ + +DD + EELE+ LI SDIG+ +I++ L K Sbjct: 8 KLKTGLTKTRDNLTDKINEALNLAVTIDDDMYEELEEALIMSDIGMDTTIEIIDRLKAKI 67 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 R K V+ V + E+I +M++ + + + V+L++GVNGVGKTT IGK++ Sbjct: 68 RKEKINDVEMVKPALKEVIAEMMLEGDYEEEEEDNEK-KVMLIIGVNGVGKTTSIGKIAA 126 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 + + G KV+LAA DTFR+AAIDQL IW+ R + D V + GSD AA+ ++A + A+A+ Sbjct: 127 RNKNNGKKVLLAAADTFRAAAIDQLDIWSQRANVDIVKHQEGSDPAAVVFDAVQAAKARD 186 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 VD+LI DTAGRLHN LM + K+ R++ R L VLD TTGQNA+ Q + F Sbjct: 187 VDLLICDTAGRLHNKKNLMDELAKINRIIDRELGDRKKETLLVLDGTTGQNAVIQAKQFM 246 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 G+I+TK+DGTA+GG +I I T IPV ++GVGEG+ DL+ F AK+F+ Sbjct: 247 EACPIDGIILTKLDGTAKGGVVISIKNTLNIPVKYIGVGEGVEDLQKFNAKEFA 300 >gi|326506274|dbj|BAJ86455.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326532852|dbj|BAJ89271.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 355 Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 120/310 (38%), Positives = 187/310 (60%), Gaps = 6/310 (1%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVR--EELEDLLIRSDIGVAVA 63 + ++ S + KL GF+ T L + ++++ L D R ++LE+ L+ SD G ++ Sbjct: 45 IKEKAKSDVDKLFSGFSKTRENLSV-VDELLTYWNLADTDRVLDDLEEALLVSDFGPKIS 103 Query: 64 QKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNG 121 +IV+ L + R K S + + I ++L R P VI++VGVNG Sbjct: 104 FRIVDTLRDEIRDGKLKSGTEIKASLKRCILELLTTKGSKTELQLGFRKPAVIMIVGVNG 163 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SEIGSDAAA 180 GKTT +GKL+ + + G KV++AAGDTFR+AA DQL+IWA+RT ++ V ++ + A + Sbjct: 164 GGKTTSLGKLAHRFKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPS 223 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + +A K+ + + D+++ DT+GRLH N LM + +V+ + P AP+ +L VLD T Sbjct: 224 VLSQAVKRGKREGFDIVLCDTSGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGT 283 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TG N L+Q + F+ V G TG I+TK+DGTARGG ++ +V IPV F+GVGEG+ DL+P Sbjct: 284 TGLNMLQQAKEFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQP 343 Query: 301 FVAKDFSAVI 310 F A+ F I Sbjct: 344 FDAEAFVEAI 353 >gi|319946576|ref|ZP_08020810.1| cell division protein FtsY [Streptococcus australis ATCC 700641] gi|319746624|gb|EFV98883.1| cell division protein FtsY [Streptococcus australis ATCC 700641] Length = 556 Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 112/257 (43%), Positives = 155/257 (60%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ VL V +I K++ K ++ F Sbjct: 293 IMSDVGVQVASNLTEELRYEARLENAKKPDVLRRV--IIEKLVDLYEKDGQYNEQINFKD 350 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ K G KVML A DTFR+ A+ QL W R Sbjct: 351 GLTVMLFVGVNGVGKTTSIGKLAHKYKKEGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 410 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V SD A++ ++ ++A A++VDVL+IDTAGRL N LMA + K+ R++KR+DP A Sbjct: 411 VTGPEKSDPASVVFDGMERAVAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPTA 470 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 471 PHETFLALDASTGQNALVQAKEFSKITPITGIVLTKIDGTARGGVVLAIREELDIPVKLI 530 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 531 GFGEKIDDIGEFNSENF 547 >gi|146318841|ref|YP_001198553.1| Signal recognition particle GTPase [Streptococcus suis 05ZYH33] gi|146321051|ref|YP_001200762.1| Signal recognition particle GTPase [Streptococcus suis 98HAH33] gi|145689647|gb|ABP90153.1| Signal recognition particle GTPase [Streptococcus suis 05ZYH33] gi|145691857|gb|ABP92362.1| Signal recognition particle GTPase [Streptococcus suis 98HAH33] gi|292558502|gb|ADE31503.1| Cell division transporter substrate-binding protein FtsY [Streptococcus suis GZ1] Length = 428 Score = 198 bits (503), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 126/305 (41%), Positives = 179/305 (58%), Gaps = 13/305 (4%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 SE + R L K +L E + R +D+ EELE++LI SD+GV VA + Sbjct: 122 SEQDKYQRTLKKTRTGFGARLNEFFANF---RSVDEEFFEELEEMLILSDVGVQVASTLT 178 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH------VILVVGVNG 121 EEL RY + + + ++ +I + L+ + + + FS + + V+L VGVNG Sbjct: 179 EEL---RYEAKLQNAKKIDELRRVIIEKLVDIYEK-DGQFSEQINFQDDLTVMLFVGVNG 234 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT IGKL+ K AG KVML A DTFR+ A+ QL W R V SD A++ Sbjct: 235 VGKTTSIGKLAYKYKQAGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGPEKSDPASV 294 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++ K+A A+ VD+L+IDTAGRL N LMA + K+ R++KR P APH L LDA+T Sbjct: 295 VFDGVKRAVAEGVDILMIDTAGRLQNKENLMAELEKIGRIIKRTLPDAPHETLLALDAST 354 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL Q + F + TGL++TK+DGTA+GG ++ I IPV +G GE I+D+ F Sbjct: 355 GQNALSQAKEFAKITPLTGLVLTKLDGTAKGGVVLAIRQELDIPVKLIGFGEKIDDIGEF 414 Query: 302 VAKDF 306 +++F Sbjct: 415 KSEEF 419 >gi|304384765|ref|ZP_07367111.1| cell division protein FtsY [Pediococcus acidilactici DSM 20284] gi|304328959|gb|EFL96179.1| cell division protein FtsY [Pediococcus acidilactici DSM 20284] Length = 385 Score = 198 bits (503), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 127/316 (40%), Positives = 185/316 (58%), Gaps = 14/316 (4%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 +E+ + R L + S KL T+ +DD ++LE+ LI +D+G A +I Sbjct: 75 NEAEKYDRGLERSRKSFGQKLSALFTNFSG---VDDDFYDDLEETLIEADVGFDTALEIS 131 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL------SKPFNWDFSHR-PHVILVVGVN 120 EE+ + ++VS +S+LI + L+ L ++ + FS P V L VGVN Sbjct: 132 EEVREEIEFENVSDPE---KISQLIVRRLVDLYTRNGSAEDNHLVFSKEGPTVFLFVGVN 188 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT IGK++ + G KV+LAA DTFR+ AI QL+ WA+R D V + SD AA Sbjct: 189 GVGKTTSIGKMAARFKARGRKVLLAACDTFRAGAIQQLEEWANRDGVDIVTGKEKSDPAA 248 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 +A+EA K+A+A+ D++ IDTAGRL N LM + K+ RV+ R P AP L VLD+T Sbjct: 249 VAFEAVKKAKAENYDLVFIDTAGRLQNKVNLMKELDKIKRVISREIPDAPQESLLVLDST 308 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNAL Q + F TG+I+TK+DGTA+GG ++ I + V ++G+GE + DL P Sbjct: 309 TGQNALTQAKAFLETTNVTGIILTKLDGTAKGGIVLAIRNQLHLAVKYVGLGEKVEDLSP 368 Query: 301 FVAKDF-SAVITGCLD 315 F +++ + G LD Sbjct: 369 FNPEEYVRGLFKGLLD 384 >gi|196232645|ref|ZP_03131497.1| signal recognition particle-docking protein FtsY [Chthoniobacter flavus Ellin428] gi|196223407|gb|EDY17925.1| signal recognition particle-docking protein FtsY [Chthoniobacter flavus Ellin428] Length = 284 Score = 198 bits (503), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 119/260 (45%), Positives = 164/260 (63%), Gaps = 1/260 (0%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 +ELE+ LIR+D+GV + +I+ L + A+ ++ + V+ E I K+L P Sbjct: 21 DELEESLIRADLGVPMMTRIMTALQGREDAEKLTAETVVKVAREEIIKVL-PRDSVTLRP 79 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + + VILVVGVNG GKTT KL+ + G VMLAA DTFR+AAI+QL +WA+R + Sbjct: 80 LASKTKVILVVGVNGTGKTTSTAKLAYFLQRKGHSVMLAAADTFRAAAIEQLGVWAERLN 139 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D V + SD AAL YEA++ A K V+ LI DTAGRLH + LM +GK+ RVL + D Sbjct: 140 IDIVKGQYNSDPAALCYEAYQSADRKNVEFLICDTAGRLHTKTNLMGELGKVKRVLAKAD 199 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 APH L V+DATTG NAL+Q + FHA G TG+I+TK+DG+ +GG ++ I IP Sbjct: 200 AQAPHETLLVVDATTGGNALQQAKEFHAATGLTGVIVTKLDGSGKGGCVVAIQNELGIPT 259 Query: 287 YFLGVGEGINDLEPFVAKDF 306 F+G GE + DL F ++ F Sbjct: 260 RFIGTGEKMEDLAFFESRQF 279 >gi|56419729|ref|YP_147047.1| signal recognition particle GTPase [Geobacillus kaustophilus HTA426] gi|56379571|dbj|BAD75479.1| signal recognition particle GTPase (docking protein) [Geobacillus kaustophilus HTA426] Length = 328 Score = 198 bits (503), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 128/310 (41%), Positives = 185/310 (59%), Gaps = 25/310 (8%) Query: 13 WIRKLTKGFASTSLKLKEGIT-----------DIISS-RRLDDGVREELEDLLIRSDIGV 60 W K TK + + K KEG++ D+I+ R++D+ EELE++LI +D+GV Sbjct: 7 WKEKWTKQADAVTEKFKEGLSKTRNSLAGKVNDLIARYRKVDEEFFEELEEILIAADVGV 66 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------- 112 ++V+EL + +++ + DV I + L+ + + D Sbjct: 67 TTVMELVDELKMEVKRRNIQDPAQMRDV---IAEKLVDIYRA-GADGKELSALNIQEGGL 122 Query: 113 -VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 VIL VGVNGVGKTT IGKL+ K+ G V+LAAGDTFR+ AI+QL+ W +R D + Sbjct: 123 TVILFVGVNGVGKTTTIGKLAHKLKSEGKSVLLAAGDTFRAGAIEQLEAWGERVGVDVIK 182 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 GSD AA+ Y+A + A+A+ VDVL+ DTAGRL N LM + K+ RV+ R P APH Sbjct: 183 QAAGSDPAAVMYDAIQAAKARGVDVLLCDTAGRLQNKVNLMKELEKVKRVISREIPGAPH 242 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 VL VLDATTGQNA+ Q ++F TG+++TK+DGTA+GG ++ I IPV +G+ Sbjct: 243 EVLLVLDATTGQNAMSQAKLFKEATDVTGIVLTKLDGTAKGGIVLAIRNEMAIPVKLVGL 302 Query: 292 GEGINDLEPF 301 GE ++DL+ F Sbjct: 303 GEKMDDLQVF 312 >gi|225019242|ref|ZP_03708434.1| hypothetical protein CLOSTMETH_03195 [Clostridium methylpentosum DSM 5476] gi|224947873|gb|EEG29082.1| hypothetical protein CLOSTMETH_03195 [Clostridium methylpentosum DSM 5476] Length = 302 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 112/254 (44%), Positives = 156/254 (61%), Gaps = 8/254 (3%) Query: 56 SDIGVAVAQKIVEEL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112 SD+GV + KI E L + +R D S + L + E++ +ML + +P Sbjct: 47 SDVGVNTSMKICETLRKRVKERGITDGSQVKGL--LKEIMTEML---TGGEELKIDTKPS 101 Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 VILV+GVNGVGKTT IGKL+ + G +V+L A DTFR+AAIDQL+IWADR V Sbjct: 102 VILVIGVNGVGKTTTIGKLAANLQAQGKQVILGAADTFRAAAIDQLQIWADRAGTKLVKH 161 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 GSD AA+ ++ A+++ DV +IDTAGRLHN LM + K+ RV++R Sbjct: 162 SEGSDPAAVVFDTLAAAKSRGADVAVIDTAGRLHNKKNLMNELEKISRVIEREAEGCDKE 221 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 VL VLDATTGQN + Q F G TG+++TK+DGTA+GG +I I +P+ ++GVG Sbjct: 222 VLLVLDATTGQNGVNQAREFMNTTGLTGIVLTKLDGTAKGGVVIAIKDELGLPIKYIGVG 281 Query: 293 EGINDLEPFVAKDF 306 E ++DL+PF + F Sbjct: 282 EQLDDLQPFEPEAF 295 >gi|270290357|ref|ZP_06196582.1| signal recognition particle receptor [Pediococcus acidilactici 7_4] gi|270281138|gb|EFA26971.1| signal recognition particle receptor [Pediococcus acidilactici 7_4] Length = 385 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 127/316 (40%), Positives = 185/316 (58%), Gaps = 14/316 (4%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 +E+ + R L + S KL T+ +DD ++LE+ LI +D+G A +I Sbjct: 75 NEAEKYDRGLERSRKSFGQKLSALFTNFSG---VDDDFYDDLEETLIEADVGFDTALEIS 131 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL------SKPFNWDFSHR-PHVILVVGVN 120 EE+ + ++VS +S+LI + L+ L ++ + FS P V L VGVN Sbjct: 132 EEVREEIEFENVSDPE---KISQLIVRRLVDLYTRNGSAEDNHLVFSKEGPTVFLFVGVN 188 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT IGK++ + G KV+LAA DTFR+ AI QL+ WA+R D V + SD AA Sbjct: 189 GVGKTTSIGKMAARFKARGRKVLLAACDTFRAGAIQQLEEWANRDGVDIVTGKEKSDPAA 248 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 +A+EA K+A+A+ D++ IDTAGRL N LM + K+ RV+ R P AP L VLD+T Sbjct: 249 VAFEAVKKAKAENYDLVFIDTAGRLQNKVNLMKELDKIKRVISREIPDAPQESLLVLDST 308 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNAL Q + F TG+I+TK+DGTA+GG ++ I + V ++G+GE + DL P Sbjct: 309 TGQNALTQAKAFLETTNVTGIILTKLDGTAKGGIVLAIRNQLHLAVKYVGLGEKVEDLSP 368 Query: 301 FVAKDF-SAVITGCLD 315 F +++ + G LD Sbjct: 369 FNPEEYVRGLFKGLLD 384 >gi|261207046|ref|ZP_05921735.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecium TC 6] gi|289565321|ref|ZP_06445771.1| signal recognition particle-docking protein FtsY [Enterococcus faecium D344SRF] gi|294614482|ref|ZP_06694397.1| signal recognition particle-docking protein FtsY [Enterococcus faecium E1636] gi|260078674|gb|EEW66376.1| cell division transporter substrate-binding protein FtsY [Enterococcus faecium TC 6] gi|289162811|gb|EFD10661.1| signal recognition particle-docking protein FtsY [Enterococcus faecium D344SRF] gi|291592659|gb|EFF24253.1| signal recognition particle-docking protein FtsY [Enterococcus faecium E1636] Length = 332 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 97/194 (50%), Positives = 132/194 (68%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 VIL VGVNGVGKTT IGKL+ + + G KV++AA DTFR+ AIDQL +W +R + V Sbjct: 127 VILFVGVNGVGKTTSIGKLAHQFKNEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRG 186 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 G D AA+ ++A ++ + ++ DVL++DTAGRL N LM + K+ RV++R P AP Sbjct: 187 NAGGDPAAVVFDALERVKTEQADVLLVDTAGRLQNKVNLMNELEKIKRVIQRELPEAPQE 246 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 L VLDATTGQNA+ Q + F TGL++TK+DGTA+GG ++ I +PV +G+G Sbjct: 247 TLLVLDATTGQNAMVQAKQFKETTDVTGLVLTKLDGTAKGGIVLAIRNELHLPVKLVGLG 306 Query: 293 EGINDLEPFVAKDF 306 EGI+DLEPF DF Sbjct: 307 EGIDDLEPFDPNDF 320 >gi|255655261|ref|ZP_05400670.1| putative signal recognition particle [Clostridium difficile QCD-23m63] gi|296451246|ref|ZP_06892986.1| cell division protein FtsY [Clostridium difficile NAP08] gi|296880402|ref|ZP_06904365.1| cell division protein FtsY [Clostridium difficile NAP07] gi|296259852|gb|EFH06707.1| cell division protein FtsY [Clostridium difficile NAP08] gi|296428643|gb|EFH14527.1| cell division protein FtsY [Clostridium difficile NAP07] Length = 423 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 114/258 (44%), Positives = 166/258 (64%), Gaps = 3/258 (1%) Query: 56 SDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114 +D+GV I+E L K K + +V ++ ++ +L ++ D P +I Sbjct: 167 ADVGVNTTMDIIERLRDKIKQKGIIEPIKVREELKSIVEDILT--NENSTLDIEPAPCII 224 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 L+VGVNGVGKTT IGKL+ + G KV+LAA DTFR+AA +QL+IWA+RT+ D + + Sbjct: 225 LMVGVNGVGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQE 284 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 G+D A+ ++A K A+A+K DVLI DTAGRLHN + LM +GK+ +++ R P A VL Sbjct: 285 GADPGAVVFDAIKAAKARKTDVLICDTAGRLHNKANLMNELGKVFKIVDREFPEAKREVL 344 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DATTGQNA+ Q + F VA TG+++TK+DGTA+GG ++ + +PV +GVGE Sbjct: 345 LVVDATTGQNAVIQAKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGES 404 Query: 295 INDLEPFVAKDFSAVITG 312 + DL+ F AK FS + G Sbjct: 405 VEDLQDFNAKSFSDALFG 422 >gi|116490533|ref|YP_810077.1| signal recognition particle-docking protein FtsY [Oenococcus oeni PSU-1] gi|116091258|gb|ABJ56412.1| signal recognition particle-docking protein FtsY [Oenococcus oeni PSU-1] Length = 382 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 109/261 (41%), Positives = 159/261 (60%), Gaps = 9/261 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH--- 109 LI +D+G +A KI EL + K+ S ++ + + +I K++ + N + + Sbjct: 115 LIAADVGFEMALKISNELQDEVRLKNASSKKDVQNT--IIEKLVNVYDQAGNGENNEMLF 172 Query: 110 ----RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 +P V L VGVNGVGKTT IGK++ G KV+LAA DTFR+ A +QL WA R Sbjct: 173 AEAGQPSVFLFVGVNGVGKTTTIGKMASFYKKQGKKVLLAAADTFRAGATEQLVEWAHRD 232 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 D V + SD A++ ++ K++ D+L +DTAGRL NN LM + KM +++ R Sbjct: 233 QVDVVTGKEKSDPASVVFDGVKKSIDGHYDILFVDTAGRLQNNDNLMRELEKMKKIITRQ 292 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P+AP VL VLDATTGQNAL+Q +F TGL++TK+DGTA+GG ++ I +P Sbjct: 293 LPNAPQEVLLVLDATTGQNALQQARLFKDSTDVTGLVLTKLDGTAKGGIVLAIRQELHLP 352 Query: 286 VYFLGVGEGINDLEPFVAKDF 306 V ++G+GE ++DLEPF A +F Sbjct: 353 VKWVGLGEKVDDLEPFNADEF 373 >gi|297620664|ref|YP_003708801.1| cell division protein FtsY [Waddlia chondrophila WSU 86-1044] gi|297375965|gb|ADI37795.1| cell division protein FtsY [Waddlia chondrophila WSU 86-1044] Length = 307 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 121/302 (40%), Positives = 183/302 (60%), Gaps = 7/302 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---VE 68 S K+ + T L E + + S + +D+ E+LE L +D+G+ + ++ V+ Sbjct: 8 SSFEKVKNALSKTRSALGEKLRSLFSGK-IDEETLEQLEQLFYEADLGIQASVELTAKVK 66 Query: 69 ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 E+ R ++ + ++ ++ + I + L +S + P VILVVGVNG GKTT + Sbjct: 67 EIY--RKNPNLDAEGLIVEMKKEIEQSLSKISAEMAEN-PDPPTVILVVGVNGNGKTTTV 123 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+K+ DAG KV++AA DT+R+AA+ QL++W R +D V SDAAA+A++A Sbjct: 124 AKLAKRYQDAGKKVLIAAADTYRAAAVAQLEVWTSRIGSDLVKGAPNSDAAAVAFDAMTA 183 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ DV++IDTAGRLH LM + K+ RV ++ P +PH L VLDAT GQNA+ Q Sbjct: 184 AKARGADVVLIDTAGRLHTRKDLMQELEKIKRVCNKVMPGSPHETLLVLDATIGQNAIDQ 243 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 ++FH +GL +TK+DGTA+GG +I I IPV F+GVGE ++DLEPF FS Sbjct: 244 AKIFHEYTPISGLCLTKLDGTAKGGVVINIQKQLGIPVKFIGVGETLSDLEPFNPAHFSQ 303 Query: 309 VI 310 + Sbjct: 304 AL 305 >gi|253751926|ref|YP_003025067.1| cell division protein FtsY [Streptococcus suis SC84] gi|253753749|ref|YP_003026890.1| cell division protein FtsY [Streptococcus suis P1/7] gi|253755373|ref|YP_003028513.1| cell division protein FtsY [Streptococcus suis BM407] gi|251816215|emb|CAZ51842.1| putative cell division protein FtsY [Streptococcus suis SC84] gi|251817837|emb|CAZ55590.1| putative cell division protein FtsY [Streptococcus suis BM407] gi|251819995|emb|CAR46155.1| putative cell division protein FtsY [Streptococcus suis P1/7] gi|319758288|gb|ADV70230.1| Signal recognition particle GTPase [Streptococcus suis JS14] Length = 424 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 126/305 (41%), Positives = 179/305 (58%), Gaps = 13/305 (4%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 SE + R L K +L E + R +D+ EELE++LI SD+GV VA + Sbjct: 118 SEQDKYQRTLKKTRTGFGARLNEFFANF---RSVDEEFFEELEEMLILSDVGVQVASTLT 174 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH------VILVVGVNG 121 EEL RY + + + ++ +I + L+ + + + FS + + V+L VGVNG Sbjct: 175 EEL---RYEAKLQNAKKIDELRRVIIEKLVDIYEK-DGQFSEQINFQDDLTVMLFVGVNG 230 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT IGKL+ K AG KVML A DTFR+ A+ QL W R V SD A++ Sbjct: 231 VGKTTSIGKLAYKYKQAGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGPEKSDPASV 290 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++ K+A A+ VD+L+IDTAGRL N LMA + K+ R++KR P APH L LDA+T Sbjct: 291 VFDGVKRAVAEGVDILMIDTAGRLQNKENLMAELEKIGRIIKRTLPDAPHETLLALDAST 350 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL Q + F + TGL++TK+DGTA+GG ++ I IPV +G GE I+D+ F Sbjct: 351 GQNALSQAKEFAKITPLTGLVLTKLDGTAKGGVVLAIRQELDIPVKLIGFGEKIDDIGEF 410 Query: 302 VAKDF 306 +++F Sbjct: 411 KSEEF 415 >gi|312864560|ref|ZP_07724791.1| signal recognition particle-docking protein FtsY [Streptococcus downei F0415] gi|311099687|gb|EFQ57900.1| signal recognition particle-docking protein FtsY [Streptococcus downei F0415] Length = 561 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 112/260 (43%), Positives = 160/260 (61%), Gaps = 8/260 (3%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNW----D 106 +LI SD+GV VA + EEL RY + + DV + I K++ K + + Sbjct: 296 MLILSDVGVQVATNLTEEL---RYEVKLENAKKTEDVRRVVIEKLVDIYEKDGQFKETIN 352 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 F V+L VGVNGVGKTT IGKL+ K + G KVML A DTFR+ A+ QL+ W +R Sbjct: 353 FQDGLTVMLFVGVNGVGKTTSIGKLAYKYKNQGKKVMLVAADTFRAGAVAQLQEWGNRVG 412 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + +D A++ ++ ++A A+ VD+L+IDTAGRL N LMA + K+ R++KR+ Sbjct: 413 VPVITGPEKADPASVVFDGMEKAVAQGVDILMIDTAGRLQNKENLMAELEKIGRIVKRVL 472 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH L LDA+TGQNAL Q + F + TGL++TK+DGTA+GG ++ I IPV Sbjct: 473 PDAPHETLLALDASTGQNALSQAKEFSKITPLTGLVLTKIDGTAKGGIVLAIRQELDIPV 532 Query: 287 YFLGVGEGINDLEPFVAKDF 306 F+G GE I+D+ F +++F Sbjct: 533 KFIGFGEKIDDIGEFHSEEF 552 >gi|307709476|ref|ZP_07645933.1| signal recognition particle-docking protein FtsY [Streptococcus mitis SK564] gi|307619790|gb|EFN98909.1| signal recognition particle-docking protein FtsY [Streptococcus mitis SK564] Length = 427 Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 110/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K N+D F Sbjct: 164 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDERIHFQE 221 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 222 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 281 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 282 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 341 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 342 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 401 Query: 290 GVGEGINDLEPFVAKDF 306 G GE IND+ F +++F Sbjct: 402 GFGEKINDIGEFNSENF 418 >gi|251772246|gb|EES52816.1| Cell division protein (FtsY) [Leptospirillum ferrodiazotrophum] Length = 303 Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 122/297 (41%), Positives = 180/297 (60%), Gaps = 3/297 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + + K+ +G T K+ I + + R D G +ELE++LI +D+G V+++IVEEL Sbjct: 1 MGFFDKIREGLQKTRDKVARSIESVFNRR--DPGFYQELEEILISADVGPVVSKEIVEEL 58 Query: 71 LT-KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 ++ + L + + + P S S P V+L+VGVNGVGKTT G Sbjct: 59 KAWEKTNPGATADESLAHLESSLTAIFTPASPWEESSPSKSPMVVLLVGVNGVGKTTTAG 118 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + DAG V+L A DTFR+AAI+QL+ W +R V + G+D A++A++ + A Sbjct: 119 KLAARFRDAGNSVILGAADTFRAAAIEQLRKWGERLDIPVVHQKPGADPASVAFDTVRAA 178 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +D+ IIDTAGRL N LM + K+ ++ R P +P VL VLDAT GQNAL Q+ Sbjct: 179 RARGIDMAIIDTAGRLQNKQNLMNELRKIGAIIHREAPDSPVEVLLVLDATIGQNALSQL 238 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F +A +GL++TK+DGT+RGG +I + HKIPV F+GVGE +DL PF F Sbjct: 239 DEFVKIAPVSGLVLTKLDGTSRGGVVIALARRHKIPVRFIGVGEKTDDLLPFDPSTF 295 >gi|255541488|ref|XP_002511808.1| cell division protein ftsy, putative [Ricinus communis] gi|223548988|gb|EEF50477.1| cell division protein ftsy, putative [Ricinus communis] Length = 362 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 109/271 (40%), Positives = 169/271 (62%), Gaps = 3/271 (1%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSK 101 D + +ELE++L+ SD G + IVE L + + + D + + + ++L+ Sbjct: 90 DKILDELEEILLVSDFGPRITINIVESLRKDILSGKLKSGSEIKDALKKSVLQLLINKGN 149 Query: 102 PFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 + R P VI++VGVNG GKTT +GKL+ ++ + G K+++AAGDTFR+AA DQL+I Sbjct: 150 KTDLQLGFRKPAVIMIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEI 209 Query: 161 WADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 WA+RT + V +E + A+++ +A K+ + + DV++ DT+GRLH N LM + Sbjct: 210 WAERTGCEIVVAEKEKAKASSVLSQAIKRGKEQGFDVVLCDTSGRLHTNYSLMEELIACK 269 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 + + ++ P AP+ +L VLD TG N L Q F+ V G TGLI+TK+DG+ARGG ++ +V Sbjct: 270 KAIGKVVPGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVV 329 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 IPV F+GVGEG+ DL+PF A+ F I Sbjct: 330 DELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 360 >gi|89900462|ref|YP_522933.1| signal recognition particle-docking protein FtsY [Rhodoferax ferrireducens T118] gi|89345199|gb|ABD69402.1| signal recognition particle-docking protein FtsY [Rhodoferax ferrireducens T118] Length = 364 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 127/315 (40%), Positives = 186/315 (59%), Gaps = 16/315 (5%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 V E W+ KL G T+ I+ + S R+D+ + EELE L+ +D GVA Q Sbjct: 54 VPPERQKWLDKLKAGLGKTA----NSISGVFSGTRIDEALYEELEGALLMADTGVAATQY 109 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVG 123 ++++L +R K+ + + + L+ + L H+P VI+V GVNG G Sbjct: 110 LLDDL--RRKVKESGITHPVALKNILVASLTELLLPLEKPLVIGQHKPTVIMVTGVNGAG 167 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--TSADF------VCSEIG 175 KTT IGKL++ ++ G V+LAA DTFR+AA +QL +WA R TS D + S+ G Sbjct: 168 KTTSIGKLTQHLAMHGASVLLAAADTFRAAAREQLGVWATRAGTSTDTPDHSVEIISQQG 227 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 D AA++++A +A+ DV+++DTAGRL LM + K+ RV+++ D APH +L Sbjct: 228 GDPAAVSFDAVSAGKARGKDVVLVDTAGRLPTQLHLMEELRKIKRVVQKADATAPHEILL 287 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+D TGQNAL QV+ F G TGLI+TK+DGTA+GG L I +PVYF+GVGE + Sbjct: 288 VIDGNTGQNALTQVKAFDEALGLTGLIVTKLDGTAKGGVLAAIARERPVPVYFIGVGEQL 347 Query: 296 NDLEPFVAKDFSAVI 310 DLE F A++F+ + Sbjct: 348 EDLETFNAREFAQAL 362 >gi|168210652|ref|ZP_02636277.1| signal recognition particle-docking protein FtsY [Clostridium perfringens B str. ATCC 3626] gi|168217002|ref|ZP_02642627.1| signal recognition particle-docking protein FtsY [Clostridium perfringens NCTC 8239] gi|170711266|gb|EDT23448.1| signal recognition particle-docking protein FtsY [Clostridium perfringens B str. ATCC 3626] gi|182380866|gb|EDT78345.1| signal recognition particle-docking protein FtsY [Clostridium perfringens NCTC 8239] Length = 304 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 127/294 (43%), Positives = 181/294 (61%), Gaps = 3/294 (1%) Query: 16 KLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73 KL G T L + I + ++ + +DD + EELE+ LI SDIG+ +I++ L K Sbjct: 8 KLKTGLTKTRDNLTDKINEALNLAVTIDDDMYEELEEALIMSDIGMDTTVEIIDRLKAKI 67 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 R K V+ V + E+I +M++ V+L++GVNGVGKTT IGK++ Sbjct: 68 RKEKINDVEMVKPALKEVIAEMMLEGDSEEEE-DDKEKKVMLIIGVNGVGKTTSIGKIAA 126 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 + + G KV+LAA DTFR+AAIDQL IW+ R + D V + GSD AA+ ++A + A+A+ Sbjct: 127 RNKNNGKKVLLAAADTFRAAAIDQLDIWSQRANVDIVKHQEGSDPAAVVFDAVQAAKARD 186 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 VD+LI DTAGRLHN LM + K+ R++ R L VLD TTGQNA+ Q + F Sbjct: 187 VDLLICDTAGRLHNKKNLMDELAKINRIIDRELGDRKKETLLVLDGTTGQNAVIQAKQFM 246 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 G+I+TK+DGTA+GG +I I T IPV ++GVGEG+ DL+ F AK+F+ Sbjct: 247 EACPIDGIILTKLDGTAKGGVVISIKNTLNIPVKYIGVGEGVEDLQKFNAKEFA 300 >gi|19745687|ref|NP_606823.1| signal recognition particle (docking protein) [Streptococcus pyogenes MGAS8232] gi|19747821|gb|AAL97322.1| putative signal recognition particle (docking protein) [Streptococcus pyogenes MGAS8232] Length = 516 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 118/272 (43%), Positives = 168/272 (61%), Gaps = 6/272 (2%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 RR+D+ EELE++LI SD+GV VA + EEL + ++ L V ++ K++ Sbjct: 238 RRVDEEFFEELEEMLILSDVGVHVATTLTEELRYEAKLENAKKPDALKRV--IVEKLVGI 295 Query: 99 LSKP--FNWDFSHRP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 K +N +++ V+L VGVNGVGKTT IGKL+ + G KVML A DTFR+ A Sbjct: 296 YEKDGRYNEAINYQDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFRAGA 355 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 + QL W R + +D A++ ++ ++A AK VD+L+IDTAGRL N LMA Sbjct: 356 VAQLVEWGRRVDVPVITGPEKADPASVVFDGMEKAVAKGVDILLIDTAGRLQNKENLMAE 415 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + KM R++KR+ P APH L LDA+TGQNAL Q + F + TGLI+TK+DGTA+GG Sbjct: 416 LEKMGRIIKRVLPDAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGV 475 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++ I IPV F+G GE ++D+ F ++DF Sbjct: 476 VLAIRQELDIPVKFIGFGEKVDDIGEFHSEDF 507 >gi|222152727|ref|YP_002561904.1| cell division protein FtsY [Streptococcus uberis 0140J] gi|222113540|emb|CAR41334.1| putative cell division protein FtsY [Streptococcus uberis 0140J] Length = 485 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 115/259 (44%), Positives = 160/259 (61%), Gaps = 6/259 (2%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNW--DF 107 +LI SD+GV+VA ++ EEL + ++ L V +I K++ K FN + Sbjct: 220 MLILSDVGVSVATELTEELRQEAKLENAKKPDDLKRV--IIEKLVDIYEKDGTFNEAINL 277 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 V+L VGVNGVGKTT IGKL+ + G KVML A DTFR+ A+ QL WA R Sbjct: 278 QEGLTVMLFVGVNGVGKTTSIGKLAYRYKAEGKKVMLVAADTFRAGAVAQLAEWARRVDV 337 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V +D A++ ++ ++A A+ VD+L+IDTAGRL N LMA + KM R++KR+ P Sbjct: 338 PVVMGAEKADPASVVFDGVEKAVAQGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVIP 397 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 APH L LDA+TGQNAL Q + F + TGLI+TK+DGTA+GG ++ I +IPV Sbjct: 398 DAPHETLLALDASTGQNALSQAKEFSKILPLTGLILTKIDGTAKGGVVLAIRQELEIPVK 457 Query: 288 FLGVGEGINDLEPFVAKDF 306 F+G GE I+D+ F ++DF Sbjct: 458 FIGFGEKIDDIGEFDSEDF 476 >gi|290580784|ref|YP_003485176.1| putative cell division protein [Streptococcus mutans NN2025] gi|254997683|dbj|BAH88284.1| putative cell division protein [Streptococcus mutans NN2025] Length = 498 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 116/259 (44%), Positives = 156/259 (60%), Gaps = 6/259 (2%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNW--DF 107 +LI SD+GV VA + E+L + + L V +I K++ K FN +F Sbjct: 233 MLILSDVGVQVASTLTEDLRYEAKLEKAKKPEALRRV--IIEKLVDIYDKDGQFNEKINF 290 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 + V+L VGVNGVGKTT IGKL+ K G KVML A DTFR+ A+ QL W R Sbjct: 291 QNDLTVMLFVGVNGVGKTTSIGKLAYKYKHQGKKVMLVAADTFRAGAVAQLAEWGRRVDV 350 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V +D A++ Y+ ++A A VD+L+IDTAGRL N LMA + K+ RV+KR+ P Sbjct: 351 PVVTGPKNADPASVVYDGVERAVAADVDILMIDTAGRLQNKDNLMAELEKIGRVVKRVIP 410 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 APH L LDA+TGQNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV Sbjct: 411 DAPHETLLTLDASTGQNALVQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELAIPVK 470 Query: 288 FLGVGEGINDLEPFVAKDF 306 F+G GE I+D+ F ++DF Sbjct: 471 FIGFGEKIDDIGEFHSEDF 489 >gi|218887338|ref|YP_002436659.1| signal recognition particle-docking protein FtsY [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758292|gb|ACL09191.1| signal recognition particle-docking protein FtsY [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 464 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 120/299 (40%), Positives = 177/299 (59%), Gaps = 3/299 (1%) Query: 16 KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 KLT+G A T ++ I +++S R+D EELE++LI +D+G A ++ L + Sbjct: 158 KLTEGLARTREQITGRIDALLASHGRIDAKFWEELEEILIMADVGFEPAMQLTGRLKERA 217 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 D+ L ++ P P V+L++GVNGVGKTT I KL+ + Sbjct: 218 RKAGTDDPAAFRDL--LREELQDIFRAPRRIAAVTPPEVVLMIGVNGVGKTTTIAKLAHR 275 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G KV++AA DTFR+AAI+QL++WA R ADF GSD AA+A+EA A A Sbjct: 276 ARMQGKKVLIAAADTFRAAAIEQLEVWAKRVGADFHAKSAGSDPAAVAFEAMDVALAGGY 335 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D++ +DTAGRLH LM + K+ R+L+R P APH + V+DATTGQNAL Q ++F+ Sbjct: 336 DIVFVDTAGRLHTKVNLMEELHKIRRILERKHPGAPHRSILVIDATTGQNALSQTKLFNE 395 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 G +++TK+DGTA+GG ++ + + IP+ F+G+GE + DL PF DF+ + G Sbjct: 396 ACGVDEIVLTKLDGTAKGGIVVAVAMQFGIPITFVGLGEKMEDLRPFDGGDFALALLGV 454 >gi|291320132|ref|YP_003515390.1| cell division protein FtsY [Mycoplasma agalactiae] gi|290752461|emb|CBH40433.1| Cell division protein FtsY [Mycoplasma agalactiae] Length = 354 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 112/289 (38%), Positives = 176/289 (60%), Gaps = 11/289 (3%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI-HKMLM 97 +++D+ +ELE++LI SDI + I+ + + ++++ + D+ ELI +M + Sbjct: 69 KKIDEEYFDELEEILIMSDISAKLVYAIITHIKNEVKIRELTNTK---DIGELIADQMFV 125 Query: 98 PLSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 + D + R ++++ +GVNG GKTT I K++ K G KV++AA DTFR+ Sbjct: 126 VYTNKSVVDTTLNVEDERLNILIFIGVNGSGKTTSIAKVAHKYIKEGKKVLIAAADTFRA 185 Query: 153 AAIDQLKIWADRTSADFVCS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 A+DQ+ IW++R AD V + G+D A++ Y A ++A+A+ D+L+IDTAGRL N L Sbjct: 186 GAVDQIAIWSERVGADIVKPIKEGADPASVVYSALEKAKAENYDLLLIDTAGRLQNKINL 245 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M + KM ++ + APH L VLDATTGQN + Q + F VA TG+I+TKMDGT++ Sbjct: 246 MNELKKMYSIINKFQEDAPHECLLVLDATTGQNGVSQAKAFSEVANPTGIILTKMDGTSK 305 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL-DYGEE 319 GG ++ I I V +LG+GEG++DL+ F +F +T L D EE Sbjct: 306 GGIVLSIKDEFNINVKYLGLGEGLDDLQEFDLDNFIYEMTKDLIDKNEE 354 >gi|205373343|ref|ZP_03226147.1| signal recognition particle-docking protein FtsY [Bacillus coahuilensis m4-4] Length = 282 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 113/273 (41%), Positives = 170/273 (62%), Gaps = 15/273 (5%) Query: 56 SDIGVAVAQKIVEEL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNWDFSHR 110 +D+G ++V+EL + +R +D + DV +I + L+ + + N + S + Sbjct: 16 ADVGFNTVMELVDELRMEVKRRNIQDTA------DVQSVISEKLVEIYQGDEGNSELSIQ 69 Query: 111 PH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 + VIL VGVNGVGKTT IGK++ + G V+LAAGDTFR+ AI+QL+ W DR Sbjct: 70 ENDLTVILFVGVNGVGKTTTIGKMAHHFKEQGKSVVLAAGDTFRAGAIEQLEAWGDRVGV 129 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V GSD AA+ Y+A + A+++K D+L+ DTAGRL N LM + K+ RV++R P Sbjct: 130 PVVKQSEGSDPAAVMYDAVQAAKSRKADILLCDTAGRLQNKVNLMKELEKVKRVIEREVP 189 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 APH VL VLDATTGQNAL Q ++F +G+++TK+DGTA+GG ++ I +IPV Sbjct: 190 GAPHEVLLVLDATTGQNALVQAKVFKEATDVSGIVLTKLDGTAKGGIVLAIRNELQIPVK 249 Query: 288 FLGVGEGINDLEPFVAKDF-SAVITGCLDYGEE 319 F+G+GE ++DL+ F + + + + +D EE Sbjct: 250 FVGLGEKMDDLQSFDPEKYVYGLFSELVDQAEE 282 >gi|229092889|ref|ZP_04224023.1| Cell division protein ftsY [Bacillus cereus Rock3-42] gi|228690511|gb|EEL44294.1| Cell division protein ftsY [Bacillus cereus Rock3-42] Length = 260 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 102/227 (44%), Positives = 148/227 (65%), Gaps = 8/227 (3%) Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPH-------VILVVGVNGVGKTTVIGKLSKKMSDAG 139 +V +I + L+ + K + DF++ + V+L VGVNGVGKTT IGK++ K G Sbjct: 21 EVQAVISEKLIEIYKG-DSDFTNEVNMQKEGLTVVLFVGVNGVGKTTTIGKMAHKFKSEG 79 Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199 V+LAAGDTFR+ AI+QL++W DR + + GSD AA+ Y+A + A+A+ VDVL+ Sbjct: 80 KSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSDPAAVMYDAVQAAKARNVDVLLC 139 Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 DTAGRL N LM + K+ RV++R P APH VL V+DATTGQN L Q + F T Sbjct: 140 DTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVIDATTGQNGLSQAKTFREATNVT 199 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G+++TK+DGTA+GG ++ I +PV F+G+GE ++DL+ F + + Sbjct: 200 GIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDLQQFDPEQY 246 >gi|24379207|ref|NP_721162.1| putative cell division protein FtsY; signal recognition particle (docking protein) [Streptococcus mutans UA159] gi|24377118|gb|AAN58468.1|AE014916_9 putative cell division protein FtsY; signal recognition particle (docking protein) [Streptococcus mutans UA159] Length = 498 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 116/259 (44%), Positives = 156/259 (60%), Gaps = 6/259 (2%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNW--DF 107 +LI SD+GV VA + E+L + + L V +I K++ K FN +F Sbjct: 233 MLILSDVGVQVASTLTEDLRYEAKLEKAKKPEALRRV--IIEKLVDIYDKDGQFNEKINF 290 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 + V+L VGVNGVGKTT IGKL+ K G KVML A DTFR+ A+ QL W R Sbjct: 291 QNDLTVMLFVGVNGVGKTTSIGKLAYKYKHQGKKVMLVAADTFRAGAVAQLAEWGRRVDV 350 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V +D A++ Y+ ++A A VD+L+IDTAGRL N LMA + K+ RV+KR+ P Sbjct: 351 PVVTGPKNADPASVVYDGVERAVAADVDILMIDTAGRLQNKDNLMAELEKIGRVVKRVIP 410 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 APH L LDA+TGQNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV Sbjct: 411 DAPHETLLTLDASTGQNALVQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELAIPVK 470 Query: 288 FLGVGEGINDLEPFVAKDF 306 F+G GE I+D+ F ++DF Sbjct: 471 FIGFGEKIDDIGEFHSEDF 489 >gi|295425201|ref|ZP_06817904.1| cell division protein FtsY [Lactobacillus amylolyticus DSM 11664] gi|295064977|gb|EFG55882.1| cell division protein FtsY [Lactobacillus amylolyticus DSM 11664] Length = 403 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 103/259 (39%), Positives = 155/259 (59%), Gaps = 5/259 (1%) Query: 54 IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 I SD+G A+++ +EL L K +D + ++ + EL + + N++ Sbjct: 137 IESDVGYETAEELTDELRDEAKLQKAKTRDQLKEVIVQKLVELYDQNGNADDEKLNYNPD 196 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 H+P++ L VGVNG GKTT IGKL+K+ D G KV+LAA DTFR+ A++QL+ W R Sbjct: 197 HKPNIYLFVGVNGAGKTTTIGKLAKRFKDQGKKVILAAADTFRAGAVEQLEEWGRRVDVP 256 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V +D A++ Y+A KQA + D L++DTAGRL N LM+ + K+ R +K+L P Sbjct: 257 VVTGAEKADPASVVYDATKQAIDGQADYLLVDTAGRLQNKKNLMSELEKIQRTIKKLAPE 316 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P L VLD +TGQNAL Q + F TGL++TK+DG+++GG ++ I K+PV Sbjct: 317 QPTETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMKLPVKL 376 Query: 289 LGVGEGINDLEPFVAKDFS 307 +G+GE DL F A +++ Sbjct: 377 VGLGEKPEDLADFDAANYA 395 >gi|148269493|ref|YP_001243953.1| signal recognition particle-docking protein FtsY [Thermotoga petrophila RKU-1] gi|147735037|gb|ABQ46377.1| signal recognition particle-docking protein FtsY [Thermotoga petrophila RKU-1] Length = 294 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 129/294 (43%), Positives = 176/294 (59%), Gaps = 9/294 (3%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 L KG T + ++ ++LDD REELE+LLI++D+GV + I+E L K Sbjct: 7 LKKGLQKTKETFFGRVVKLLKGKKLDDETREELEELLIQADVGVETTEYILERLKEKDGD 66 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136 S++ ++ ++ K+ +P PF VI VVGVNG GKTT GKL+K Sbjct: 67 ALESLKEIILEILNFDTKLNVPPEPPF---------VITVVGVNGTGKTTSCGKLAKMFV 117 Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196 D G V+LAA DTFR+AAI+QLKIW +R A + G+D AA+A++A A A+ DV Sbjct: 118 DEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKDV 177 Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256 +IIDTAGRLH LM + K+ RV+K+ P APH L V+DATTGQN L Q ++F Sbjct: 178 VIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV 237 Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 TG+I+TK+DGTA+GG + I IP+ F+GVGE DL PF + F V+ Sbjct: 238 DVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVL 291 >gi|227890256|ref|ZP_04008061.1| signal recognition particle receptor FtsY [Lactobacillus johnsonii ATCC 33200] gi|227849070|gb|EEJ59156.1| signal recognition particle receptor FtsY [Lactobacillus johnsonii ATCC 33200] Length = 442 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 104/274 (37%), Positives = 165/274 (60%), Gaps = 5/274 (1%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIH 93 R +D+ ++LEDLLI SD+G A+++ + L L + D Q ++ + ++ Sbjct: 161 RTVDENFFDDLEDLLIESDVGFETAEELTDSLRDEAKLQNAKSHDALKQVIVEKLVDIYD 220 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 K D S +P+V L VGVNG GKTT IGKL+K++ D+G VM+ A DTFR+ Sbjct: 221 KGGEGEDSKLADDPSAKPNVYLFVGVNGAGKTTTIGKLAKRIKDSGKSVMMVAADTFRAG 280 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A++QL W R + + +D A++ Y+ K+A+ + +D L++DTAGRL N LM+ Sbjct: 281 AVEQLVEWGRRDGVEVITGPEKADPASVVYDGVKKAKERGIDFLLVDTAGRLQNKVNLMS 340 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + K+ R +K++ P P+ VL VLD +TGQNAL Q + F TGL++TK+DG+++GG Sbjct: 341 ELDKIKRTIKKILPDQPNEVLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGG 400 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 ++ I +PV +G+GE ++DL F A+ F+ Sbjct: 401 VVLAIRNEMDLPVKLVGLGEKVDDLANFDAEKFA 434 >gi|332526542|ref|ZP_08402654.1| signal recognition particle-docking protein FtsY [Rubrivivax benzoatilyticus JA2] gi|332110810|gb|EGJ10987.1| signal recognition particle-docking protein FtsY [Rubrivivax benzoatilyticus JA2] Length = 373 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 125/313 (39%), Positives = 186/313 (59%), Gaps = 12/313 (3%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 VA W+ +L G T IT + + ++DD + E+LE L+ +D GV Q Sbjct: 67 VAEPRSRWLDRLKLGLRKTG----SSITQVFTGTKIDDALYEDLESALLVADAGVGATQY 122 Query: 66 IVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 ++++L + + AK V +++ + ++L PL KP P V++V GVNG GK Sbjct: 123 LLQDLKRRVKEAKATEPAVVKALLADAVAELLAPLQKPLVIG-QQTPTVVMVAGVNGAGK 181 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL++ ++++ +V+LAA DTFR+AA +QL +WADR + V S+ G D AA++++ Sbjct: 182 TTTIGKLTRHLAESDRRVLLAAADTFRAAAREQLAVWADRNRVEIV-SQQGGDPAAVSFD 240 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A +A+ DV+I DTAGRL LM + K+ R + + APH VL V+D TGQN Sbjct: 241 AVTAGRARGCDVVIADTAGRLPTQLHLMDELKKIKRTIGKAQEGAPHEVLLVIDGNTGQN 300 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV-----VTHKIPVYFLGVGEGINDLE 299 AL QV+ F A G TGLI+TK+DGTA+GG L I +PVYF+GVGE + DL+ Sbjct: 301 ALAQVKAFDAALGLTGLIVTKLDGTAKGGVLAAIARWCAEQGRVVPVYFIGVGERLEDLQ 360 Query: 300 PFVAKDFSAVITG 312 F A++F+ + G Sbjct: 361 TFDAREFANALLG 373 >gi|326318567|ref|YP_004236239.1| signal recognition particle-docking protein FtsY [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375403|gb|ADX47672.1| signal recognition particle-docking protein FtsY [Acidovorax avenae subsp. avenae ATCC 19860] Length = 431 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 123/307 (40%), Positives = 182/307 (59%), Gaps = 7/307 (2%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 + E W+ +L G T I + + ++ D + +ELE+ L+ +D GV + Sbjct: 129 EAGQERKGWLDRLKNGLRKTGTS----IATVFTGTQISDALYDELEEALLMADTGVKATE 184 Query: 65 KIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 ++++L + + A+ V +++ + +L PL KP H P VI+V GVNG G Sbjct: 185 HLLQDLRQRVKEARATDPAAVKGLLADALADLLRPLEKPLEIG-RHTPTVIMVAGVNGAG 243 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL++ ++ G V+LAA DTFR+AA +QL +WADR + + V E G D AA+++ Sbjct: 244 KTTSIGKLTRHLATEGAAVLLAAADTFRAAAREQLGVWADRNTVEIVSQE-GGDPAAVSF 302 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A +A+ DV+++DTAGRL LM + K+ RV+ + D APH VL V+D TGQ Sbjct: 303 DAVSAGKARGKDVVLVDTAGRLPTQLHLMQELQKIKRVITKADGTAPHEVLLVIDGNTGQ 362 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NAL QV F TGLI+TK+DGTA+GG L I IPVYF+GVGE + DLE F A Sbjct: 363 NALAQVRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPIPVYFIGVGEKLEDLETFSA 422 Query: 304 KDFSAVI 310 ++F+ + Sbjct: 423 REFAQAL 429 >gi|268319232|ref|YP_003292888.1| signal recognition particle receptor FtsY [Lactobacillus johnsonii FI9785] gi|262397607|emb|CAX66621.1| signal recognition particle receptor FtsY [Lactobacillus johnsonii FI9785] Length = 442 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 104/274 (37%), Positives = 165/274 (60%), Gaps = 5/274 (1%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIH 93 R +D+ ++LEDLLI SD+G A+++ + L L + D Q ++ + ++ Sbjct: 161 RTVDENFFDDLEDLLIESDVGFETAEELTDSLRDEAKLQNAKSHDALKQVIVEKLVDIYD 220 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 K D S +P+V L VGVNG GKTT IGKL+K++ D+G VM+ A DTFR+ Sbjct: 221 KGGEGEDSKLADDPSAKPNVYLFVGVNGAGKTTTIGKLAKRIKDSGKSVMMVAADTFRAG 280 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A++QL W R + + +D A++ Y+ K+A+ + +D L++DTAGRL N LM+ Sbjct: 281 AVEQLVEWGRRDGVEVITGPEKADPASVVYDGVKKAKERGIDFLLVDTAGRLQNKVNLMS 340 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + K+ R +K++ P P+ VL VLD +TGQNAL Q + F TGL++TK+DG+++GG Sbjct: 341 ELDKIKRTIKKILPDQPNEVLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGG 400 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 ++ I +PV +G+GE ++DL F A+ F+ Sbjct: 401 VVLAIRNEMDLPVKLVGLGEKVDDLANFDAEKFA 434 >gi|193213473|ref|YP_001999426.1| signal recognition particle-docking protein FtsY [Chlorobaculum parvum NCIB 8327] gi|193086950|gb|ACF12226.1| signal recognition particle-docking protein FtsY [Chlorobaculum parvum NCIB 8327] Length = 320 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 120/299 (40%), Positives = 180/299 (60%), Gaps = 6/299 (2%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L +G T LKE + + + +DD EELE++L+ +D+GV IV+ + Sbjct: 9 LSRLKEGLTKTRDTLKEKLAVVTKGKTEVDDEFLEELENILVAADVGVETTLDIVDAVTE 68 Query: 73 KRYAK-----DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 + K D + V+ ++ L+ + F+ S +P+VI++VGVNG GKTT Sbjct: 69 RSKGKTYRSEDELNEMVMGEIRNLLVESGHEHPVDFDAPLSAKPYVIMIVGVNGAGKTTS 128 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 + KL+ AG KV++AA DTFR+AA +QLKIWADR + G+D A++ +++ Sbjct: 129 VAKLAHNYDKAGKKVVIAAADTFRAAAYEQLKIWADRAGVPIIGQGQGADPASVVFDSVS 188 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A +K DV+++DTAGRLHN S LM + K++RV K+ P APH VL VLD TTGQNA++ Sbjct: 189 SAVSKGTDVVLVDTAGRLHNKSHLMEELAKIMRVAKKKIPDAPHEVLLVLDGTTGQNAVQ 248 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q F TGLI+TK+DGT++GG ++ I +PV ++GVGE I+DL+ F F Sbjct: 249 QAREFTRFVNVTGLIVTKLDGTSKGGIVLSISRELNLPVKYIGVGEKIDDLQLFDRASF 307 >gi|94988095|ref|YP_596196.1| cell division protein [Streptococcus pyogenes MGAS9429] gi|94991982|ref|YP_600081.1| cell division protein ftsY [Streptococcus pyogenes MGAS2096] gi|94541603|gb|ABF31652.1| cell division protein [Streptococcus pyogenes MGAS9429] gi|94545490|gb|ABF35537.1| Cell division protein ftsY [Streptococcus pyogenes MGAS2096] Length = 516 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 111/260 (42%), Positives = 160/260 (61%), Gaps = 8/260 (3%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFS 108 +LI SD+GV VA + EEL RY + + + +I + L+ + + +N + Sbjct: 251 MLILSDVGVHVATTLTEEL---RYEAKLENAKKPDALKRVIVEKLVDIYEKDGRYNEAIN 307 Query: 109 HRP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 ++ V+L VGVNGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R Sbjct: 308 YQDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVD 367 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + +D A++ ++ ++A AK+VD+L+IDTAGRL N LMA + KM R++KR+ Sbjct: 368 VPVITGPEKADPASVVFDGMEKAVAKEVDILLIDTAGRLQNKENLMAELEKMGRIIKRVL 427 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH L LDA+TGQNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV Sbjct: 428 PDAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPV 487 Query: 287 YFLGVGEGINDLEPFVAKDF 306 F+G GE ++D+ F ++DF Sbjct: 488 KFIGFGEKVDDIGEFHSEDF 507 >gi|240146503|ref|ZP_04745104.1| signal recognition particle-docking protein FtsY [Roseburia intestinalis L1-82] gi|257201359|gb|EEU99643.1| signal recognition particle-docking protein FtsY [Roseburia intestinalis L1-82] gi|291535141|emb|CBL08253.1| signal recognition particle-docking protein FtsY [Roseburia intestinalis M50/1] gi|291539670|emb|CBL12781.1| signal recognition particle-docking protein FtsY [Roseburia intestinalis XB6B4] Length = 314 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 130/313 (41%), Positives = 183/313 (58%), Gaps = 13/313 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 W R L G + T + GI I S +DD EE+E++LI DIGV + I+E L Sbjct: 9 WSR-LVSGLSKTRDNIVSGIDSIFSGFSSIDDDFYEEIEEILIMGDIGVNATEAIIENL- 66 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPHVILVVGVNGVGKTT 126 K+ + + D +E ++ + + + + F + V+LV+GVNGVGKTT Sbjct: 67 -----KEKVKENKIKDPAECKELLINSIKEQMDVGETAYRFENEKSVVLVIGVNGVGKTT 121 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 +GKL+ K+ D G KV+LAA DTFR+AA DQL WA+R + + + G+D A++ Y+A Sbjct: 122 SVGKLAGKLKDQGKKVVLAAADTFRAAAGDQLLEWANRAGVEMIGGQEGADPASIVYDAV 181 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A+A+ DVL+ DTAGRLHN LM + K+ R+L++ P A L VLDATTGQNAL Sbjct: 182 AAAKARNADVLLCDTAGRLHNKKNLMEELKKINRILEKEYPDAYRETLVVLDATTGQNAL 241 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q F VA TG+I+TKMDGTA+GG + I IPV ++GVGE I DL+ F + +F Sbjct: 242 AQARQFSEVAEITGIILTKMDGTAKGGIAVAIHSELGIPVKYIGVGETIEDLQKFDSNEF 301 Query: 307 SAVITGCLDYGEE 319 + D E+ Sbjct: 302 VNALFDIKDQAEQ 314 >gi|329667084|gb|AEB93032.1| cell division protein [Lactobacillus johnsonii DPC 6026] Length = 429 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 104/274 (37%), Positives = 165/274 (60%), Gaps = 5/274 (1%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIH 93 R +D+ ++LEDLLI SD+G A+++ + L L + D Q ++ + ++ Sbjct: 148 RTVDENFFDDLEDLLIESDVGFETAEELTDSLRDEAKLQNAKSHDALKQVIVEKLVDIYD 207 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 K D S +P+V L VGVNG GKTT IGKL+K++ D+G VM+ A DTFR+ Sbjct: 208 KGGEGEDSKLADDPSAKPNVYLFVGVNGAGKTTTIGKLAKRIKDSGKSVMMVAADTFRAG 267 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A++QL W R + + +D A++ Y+ K+A+ + +D L++DTAGRL N LM+ Sbjct: 268 AVEQLVEWGRRDGVEVITGPEKADPASVVYDGVKKAKERGIDFLLVDTAGRLQNKVNLMS 327 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + K+ R +K++ P P+ VL VLD +TGQNAL Q + F TGL++TK+DG+++GG Sbjct: 328 ELDKIKRTIKKILPDQPNEVLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGG 387 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 ++ I +PV +G+GE ++DL F A+ F+ Sbjct: 388 VVLAIRNEMDLPVKLVGLGEKVDDLANFDAEKFA 421 >gi|218666438|ref|YP_002427127.1| signal recognition particle-docking protein FtsY [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518651|gb|ACK79237.1| signal recognition particle-docking protein FtsY [Acidithiobacillus ferrooxidans ATCC 23270] Length = 316 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 101/253 (39%), Positives = 155/253 (61%), Gaps = 2/253 (0%) Query: 55 RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHV 113 ++D+G A +++++ + + +++ L + E + +L P ++P++ + H V Sbjct: 55 QADLGSAATREVMDSVTERVRRNELTDPAALQAALRESLLDILRPRAQPWSPEKGHS-QV 113 Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 +L+VG+NG GKTT IGKL+ + G V+LAAGDTFR+AA++QL+ W R V Sbjct: 114 LLMVGINGAGKTTTIGKLAARWKAEGFTVVLAAGDTFRAAAVEQLQGWGRRAQVPVVAQG 173 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 G+D+A++ ++A +A+ D+LI DTAGRLH LM + K+ RVL + DP AP + Sbjct: 174 TGADSASVIFDALTTTRARGSDLLIADTAGRLHTQGHLMEELKKIRRVLGKQDPEAPQQI 233 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 VLDA TGQNAL Q FH G TG+ +TK+DGTA+GG + I IP+ ++GVGE Sbjct: 234 WLVLDAGTGQNALNQARQFHDAVGLTGICITKLDGTAKGGVVAAIAKALPIPIRYIGVGE 293 Query: 294 GINDLEPFVAKDF 306 + DL PF + F Sbjct: 294 QVEDLRPFDPESF 306 >gi|313678699|ref|YP_004056439.1| signal recognition particle-docking protein FtsY [Mycoplasma bovis PG45] gi|312950542|gb|ADR25137.1| signal recognition particle-docking protein FtsY [Mycoplasma bovis PG45] Length = 352 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 112/289 (38%), Positives = 176/289 (60%), Gaps = 11/289 (3%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI-HKMLM 97 +++D+ +ELE++LI SDI + I+ + + ++++ + D+ ELI +M + Sbjct: 67 KKIDEEYFDELEEILIMSDISAKLVYAIITHIKNEVKIRELTNTK---DIGELIADQMFV 123 Query: 98 PLSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 + D + R ++++ +GVNG GKTT I K++ K G KV++AA DTFR+ Sbjct: 124 VYTNKSVVDTTLNVEDDRLNILIFIGVNGCGKTTSIAKVAHKYIKEGKKVLIAAADTFRA 183 Query: 153 AAIDQLKIWADRTSADFVCS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 A+DQ+ IW++R AD V + G+D A++ Y A ++A+A+ D+L+IDTAGRL N L Sbjct: 184 GAVDQIAIWSERVGADIVKPVKEGADPASVVYSALEKAKAENYDLLLIDTAGRLQNKINL 243 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M + KM ++ + APH L VLDATTGQN + Q + F VA TG+I+TKMDGT++ Sbjct: 244 MNELKKMYSIINKFQEGAPHECLLVLDATTGQNGVSQAKAFSEVANPTGIILTKMDGTSK 303 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL-DYGEE 319 GG ++ I I V +LG+GEG++DL+ F +F +T L D EE Sbjct: 304 GGIVLSIKDEFNINVKYLGLGEGLDDLQEFDLDNFIYEMTKDLIDKNEE 352 >gi|168333989|ref|ZP_02692213.1| signal recognition particle-docking protein FtsY [Epulopiscium sp. 'N.t. morphotype B'] Length = 776 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 127/304 (41%), Positives = 196/304 (64%), Gaps = 12/304 (3%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +S +KL +G T + +G+ ++ S +++D+ + EELE++L+ SD G I+++ Sbjct: 471 VSKFKKLWQGLTKTRENIWDGVESVLKSFKKIDEELYEELEEVLVMSDFGAETTDAILDQ 530 Query: 70 LL----TKRYAKDVSVQRVLYDVSELIHKMLMP--LSKPFNWDFSHRPHVILVVGVNGVG 123 L + + + ++ L D+ I +L+ L+ P D RP+VILVVGVNG G Sbjct: 531 LRDVVKSTKITEPAELKEALKDI---ITDILISTDLTNPLVVD--DRPNVILVVGVNGAG 585 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT I KLS K+ G V+LAA DTFR+AAI+QL+IWADR D + ++ G+D A++ Y Sbjct: 586 KTTSIAKLSHKLKQEGKSVLLAAADTFRAAAIEQLEIWADRAGVDVIKNKEGTDPASVVY 645 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A A+A+K DVLI DTAGRL N LM + K+ R++++ +A V+ VLDATTGQ Sbjct: 646 DAISAAKARKSDVLICDTAGRLQNKVNLMKELEKIGRIIEKEYSNAHKQVILVLDATTGQ 705 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NA+ QV++F+ V G+I+TK+DGTA+GG ++ I + +PV F+GVGE ++DL+ FV Sbjct: 706 NAISQVKLFNEVVKIDGIILTKLDGTAKGGAIVGICQSFNVPVKFIGVGEKMDDLQEFVP 765 Query: 304 KDFS 307 + F+ Sbjct: 766 EAFA 769 >gi|302872005|ref|YP_003840641.1| signal recognition particle-docking protein FtsY [Caldicellulosiruptor obsidiansis OB47] gi|302574864|gb|ADL42655.1| signal recognition particle-docking protein FtsY [Caldicellulosiruptor obsidiansis OB47] Length = 301 Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 123/299 (41%), Positives = 190/299 (63%), Gaps = 8/299 (2%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L +G + T E + ++ S +++DD + EELE++L+ SD+GV +QKI+E Sbjct: 1 MGFFDRLREGLSKTKKNFTEKVESLLKSFKQVDDELFEELEEILVLSDVGVKTSQKIIEN 60 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKML--MPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L + + +S + + ++ L +ML + L N ++ P +IL+VGVNGVGKTT Sbjct: 61 LKERVKKEKISDSQAIKEI--LKEEMLNIIDLENKLNEEY---PLIILMVGVNGVGKTTS 115 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGK++ + G KV++ A DTFR+AA +QL+IWA R D + G+D AA+ ++ + Sbjct: 116 IGKIANLLKSNGKKVLIVAADTFRAAAAEQLEIWAKRVGCDIIKHVEGADPAAVVFDGIQ 175 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 +A+K DVLI+DTAGRLH L+ + K+ RV+ + P A L V+DATTGQNAL Sbjct: 176 AMRARKADVLIVDTAGRLHTKKNLIEELKKINRVINQQMPEANKETLLVIDATTGQNALN 235 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q + F+ +G+++TK+DGTA+GG +I I KIPV F+GVGE I+DL+ F AK+F Sbjct: 236 QAKEFNQAVNISGIVLTKLDGTAKGGIVISICDELKIPVKFVGVGEKIDDLQYFNAKEF 294 >gi|289548376|ref|YP_003473364.1| signal recognition particle-docking protein FtsY [Thermocrinis albus DSM 14484] gi|289181993|gb|ADC89237.1| signal recognition particle-docking protein FtsY [Thermocrinis albus DSM 14484] Length = 456 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 111/272 (40%), Positives = 173/272 (63%), Gaps = 4/272 (1%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94 + + R++DD + EELE+ L+++DIGV K+VE+L ++ A +++ + ++ L+ + Sbjct: 183 LFAGRKVDDQLLEELEERLVKADIGVKTVAKLVEDL--RKDAIRLNI-KTWEELEPLLKE 239 Query: 95 MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 + L K D V L +GVNG GKTT IGKL+ + G KV+L A DTFRSAA Sbjct: 240 KVYTLIKDCRGDLKE-GRVYLFLGVNGSGKTTTIGKLAFLLRQRGKKVLLCAADTFRSAA 298 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 I+QL++WA+R+ A V G+D AA+ ++A K AQ + DV+++DTAGRLH L+ Sbjct: 299 IEQLEVWAERSGAHIVKHREGADPAAVVFDAMKVAQEQGYDVVLVDTAGRLHTKEPLIRE 358 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + K+ + ++R P P L VLDAT GQN++ Q ++F TG+++TK+D +++GG Sbjct: 359 LRKIKQTIQRFFPEEPSETLLVLDATVGQNSISQAKVFKEALDITGIVLTKLDSSSKGGA 418 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++ I KIPV +G+GEGI+DL+PF K F Sbjct: 419 VVAICQDLKIPVKLVGLGEGIDDLQPFDPKVF 450 >gi|332666732|ref|YP_004449520.1| signal recognition particle-docking protein FtsY [Haliscomenobacter hydrossis DSM 1100] gi|332335546|gb|AEE52647.1| signal recognition particle-docking protein FtsY [Haliscomenobacter hydrossis DSM 1100] Length = 345 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 125/297 (42%), Positives = 178/297 (59%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG T ++ +++ R +D+ V +ELE LLI +D+G A + +I+E + R Sbjct: 43 LDKGLEKTKSSFFNNLSKMVAGRSTVDEEVLDELEALLISADVGRATSTEIIERI-EARV 101 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVIG 129 AKD + + + + + + I ++L + + +P V+LVVGVNGVGKTT IG Sbjct: 102 AKDKYLGISELNFILRDEIVQLLAENNTQDLAGYELPTGIKPFVLLVVGVNGVGKTTTIG 161 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G KV+L AGDTFR+AA+DQLKIW++R DF + +D AA+AYE A Sbjct: 162 KLAHQFKKQGKKVVLGAGDTFRAAAVDQLKIWSERVGCDFYSKGMNTDPAAVAYETVNYA 221 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 D+ IIDTAGRLH + LM +GK+ R + + APH VL VLDATTGQNA+ Q Sbjct: 222 IQNDCDIAIIDTAGRLHTKTGLMQELGKIKRSISKKIETAPHEVLLVLDATTGQNAIEQA 281 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F L +TK+DGTA+GG I I KIP+ ++GVGE I+ L+PF + F Sbjct: 282 KHFTEATDVNALALTKLDGTAKGGVAIGISNQFKIPIKYIGVGEAIDQLQPFDKQTF 338 >gi|226322323|ref|ZP_03797841.1| hypothetical protein COPCOM_00084 [Coprococcus comes ATCC 27758] gi|225209245|gb|EEG91599.1| hypothetical protein COPCOM_00084 [Coprococcus comes ATCC 27758] Length = 291 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 127/271 (46%), Positives = 179/271 (66%), Gaps = 9/271 (3%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK---RYAKD-VSVQRVLYDVSELIHKM 95 ++D+ EELE++LI D+GV I+++L K ++ K+ + +++L D K Sbjct: 10 KIDEDFYEELEEVLIMGDLGVKATYAILDDLRKKVKEQHIKEPIECRQLLIDSI----KE 65 Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 M + + ++F ++ V+LV+GVNGVGKTT IGKL+ KM G KV+LAA DTFR+AA Sbjct: 66 QMDVGET-AYEFENQTSVVLVIGVNGVGKTTTIGKLAGKMRGQGKKVVLAAADTFRAAAG 124 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 DQLK WA R+ AD + + G+D AA+ Y+A A+A+K D+L++DTAGRLHN LM + Sbjct: 125 DQLKEWAHRSDADLIGGQEGADPAAIVYDAVAAAKARKADILLVDTAGRLHNKKNLMEEL 184 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 K+ RVL+R P A L VLDATTGQNAL Q + F VA TG+I+TKMDGTA+GG Sbjct: 185 KKINRVLEREYPEAYRETLVVLDATTGQNALSQAKEFSDVADITGIILTKMDGTAKGGIA 244 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + I IPV ++GVGE I+DL+ F + +F Sbjct: 245 VAIQAELGIPVKYIGVGETIDDLQKFDSDEF 275 >gi|289168048|ref|YP_003446317.1| cell division protein FtsY [Streptococcus mitis B6] gi|288907615|emb|CBJ22452.1| cell division protein FtsY [Streptococcus mitis B6] Length = 429 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 110/257 (42%), Positives = 155/257 (60%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ VL V +I K++ K N+D F Sbjct: 166 IMSDVGVQVASNLTEELRYEAKLENAKKTDVLRRV--IIEKLVELYEKGGNYDERIHFQD 223 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 224 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 283 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 284 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 343 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 344 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 403 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 404 GFGEKIDDIGEFNSENF 420 >gi|198284460|ref|YP_002220781.1| signal recognition particle-docking protein FtsY [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248981|gb|ACH84574.1| signal recognition particle-docking protein FtsY [Acidithiobacillus ferrooxidans ATCC 53993] Length = 343 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 101/253 (39%), Positives = 155/253 (61%), Gaps = 2/253 (0%) Query: 55 RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHV 113 ++D+G A +++++ + + +++ L + E + +L P ++P++ + H V Sbjct: 82 QADLGSAATREVMDSVTERVRRNELTDPAALQAALRESLLDILRPRAQPWSPEKGHS-QV 140 Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 +L+VG+NG GKTT IGKL+ + G V+LAAGDTFR+AA++QL+ W R V Sbjct: 141 LLMVGINGAGKTTTIGKLAARWKAEGFTVVLAAGDTFRAAAVEQLQGWGRRAQVPVVAQG 200 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 G+D+A++ ++A +A+ D+LI DTAGRLH LM + K+ RVL + DP AP + Sbjct: 201 TGADSASVIFDALTTTRARGSDLLIADTAGRLHTQGHLMEELKKIRRVLGKQDPEAPQQI 260 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 VLDA TGQNAL Q FH G TG+ +TK+DGTA+GG + I IP+ ++GVGE Sbjct: 261 WLVLDAGTGQNALNQARQFHDAVGLTGICITKLDGTAKGGVVAAIAKALPIPIRYIGVGE 320 Query: 294 GINDLEPFVAKDF 306 + DL PF + F Sbjct: 321 QVEDLRPFDPESF 333 >gi|148377470|ref|YP_001256346.1| cell division protein FtsY [Mycoplasma agalactiae PG2] gi|148291516|emb|CAL58902.1| Cell division protein FtsY [Mycoplasma agalactiae PG2] Length = 354 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 112/289 (38%), Positives = 176/289 (60%), Gaps = 11/289 (3%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI-HKMLM 97 +++D+ +ELE++LI SDI + I+ + + ++++ + D+ ELI +M + Sbjct: 69 KKIDEEYFDELEEILIMSDISAKLVYAIITYIKNEVKIRELTSTK---DIGELIADQMFV 125 Query: 98 PLSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 + D + R ++++ +GVNG GKTT I K++ K G KV++AA DTFR+ Sbjct: 126 VYTNKSVVDTTLNVEDDRLNILIFIGVNGSGKTTSIAKVAHKYIKEGKKVLIAAADTFRA 185 Query: 153 AAIDQLKIWADRTSADFVCS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 A+DQ+ IW++R AD V + G+D A++ Y A ++A+A+ D+L+IDTAGRL N L Sbjct: 186 GAVDQIAIWSERVGADIVKPIKEGADPASVVYSALEKAKAENYDLLLIDTAGRLQNKINL 245 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M + KM ++ + APH L VLDATTGQN + Q + F VA TG+I+TKMDGT++ Sbjct: 246 MNELKKMYSIINKFQEGAPHECLLVLDATTGQNGVSQAKAFSEVANPTGIILTKMDGTSK 305 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL-DYGEE 319 GG ++ I I V +LG+GEG++DL+ F +F +T L D EE Sbjct: 306 GGIVLSIKDEFNINVKYLGLGEGLDDLQEFDLDNFIYEMTKDLIDKNEE 354 >gi|210622531|ref|ZP_03293224.1| hypothetical protein CLOHIR_01172 [Clostridium hiranonis DSM 13275] gi|210154166|gb|EEA85172.1| hypothetical protein CLOHIR_01172 [Clostridium hiranonis DSM 13275] Length = 450 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 125/292 (42%), Positives = 189/292 (64%), Gaps = 8/292 (2%) Query: 27 KLKEGITDII-----SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS- 80 K K+GITD I S +D+ + E+LE++LI +D+GV +I+++L + +K ++ Sbjct: 160 KAKQGITDRIDEVLKSYTSVDEELFEDLEEVLITADVGVNTTMQIIDDLNDRVRSKKITD 219 Query: 81 VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140 V ++ E++ ++L + D P +I++VGVNGVGKTT IGKL+ + G Sbjct: 220 PMAVREELKEIVEEILSKGNSKL--DVEPSPAIIIMVGVNGVGKTTTIGKLALRYKSEGK 277 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 KVMLAA DTFR+AA +QL IWA RT+ + V G+D A+ ++A K A+A+K DVLI D Sbjct: 278 KVMLAAADTFRAAATEQLDIWAKRTNTEIVKHHEGADPGAVVFDAIKAAKARKTDVLICD 337 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRLHN + LM +GK+ +++ + P A VL V+DATTGQNA+ Q + F VA TG Sbjct: 338 TAGRLHNKANLMNELGKIFKIIDKEFPEAKKEVLLVVDATTGQNAVVQAKSFKEVADITG 397 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +++TK+DGTA+GG ++ + +PV +GVGE DL+ F A++F+A + G Sbjct: 398 IVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGEKAEDLQDFDAREFTAALFG 449 >gi|42519391|ref|NP_965321.1| signal recognition particle receptor FtsY [Lactobacillus johnsonii NCC 533] gi|41583679|gb|AAS09287.1| signal recognition particle receptor FtsY [Lactobacillus johnsonii NCC 533] Length = 443 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 104/274 (37%), Positives = 164/274 (59%), Gaps = 5/274 (1%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIH 93 R +D+ ++LEDLLI SD+G A+++ + L L + D Q ++ + ++ Sbjct: 162 RTVDENFFDDLEDLLIESDVGFETAEELTDSLRDEAKLQNAKSHDALKQVIVEKLVDIYD 221 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 K D S +P+V L VGVNG GKTT IGKL+K++ D+G VM+ A DTFR+ Sbjct: 222 KGGEGEDSKLADDPSAKPNVYLFVGVNGAGKTTTIGKLAKRIKDSGKSVMMVAADTFRAG 281 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A++QL W R + + +D A++ Y K+A+ + +D L++DTAGRL N LM+ Sbjct: 282 AVEQLVEWGRRDGVEVITGPEKADPASVVYNGVKKAKERGIDFLLVDTAGRLQNKVNLMS 341 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + K+ R +K++ P P+ VL VLD +TGQNAL Q + F TGL++TK+DG+++GG Sbjct: 342 ELDKIKRTIKKILPDQPNEVLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGG 401 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 ++ I +PV +G+GE ++DL F A+ F+ Sbjct: 402 VVLAIRNEMDLPVKLVGLGEKVDDLANFDAEKFA 435 >gi|291277533|ref|YP_003517305.1| putative signal recognition particle receptor protein [Helicobacter mustelae 12198] gi|290964727|emb|CBG40582.1| putative signal recognition particle receptor protein [Helicobacter mustelae 12198] Length = 292 Score = 196 bits (497), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 105/268 (39%), Positives = 162/268 (60%), Gaps = 20/268 (7%) Query: 46 REELEDLLIRSDIGVAVAQKIVEELLTK--RYAKDVSVQRVL-----YDVSELIHKMLMP 98 +E LE++LI +D+ V +++++ L R +V + R YD L Sbjct: 26 KELLEEVLIEADVDYEVIEQLLQHLPQNITRNQLEVGLDRFFRGESYYDKVSL------- 78 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 D +P V L++GVNG GKTT I KL+K+ D+G KV+L AGDTFR+AAIDQL Sbjct: 79 ------KDIPTKPLVELIIGVNGAGKTTTIAKLAKRYKDSGKKVLLGAGDTFRAAAIDQL 132 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 K+W+++ S D + ++ GSD +ALAY+ A+K+D +IIDTAGRLHN + L + K+ Sbjct: 133 KLWSEKISVDIISTQYGSDPSALAYDTINAGSARKMDHIIIDTAGRLHNQTNLKNELLKI 192 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 RV + + P+ + +LD T G +++ Q ++FH + G+I+TK+DGT++GG ++ I Sbjct: 193 TRVCSKALNNEPYRKILILDGTQGSSSINQAKIFHEMLKVDGVILTKLDGTSKGGAILSI 252 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + K+P+ +GVGE DL F KDF Sbjct: 253 IHALKLPIIAIGVGERAEDLLDFDQKDF 280 >gi|319939362|ref|ZP_08013722.1| signal recognition particle-docking protein FtsY [Streptococcus anginosus 1_2_62CV] gi|319811348|gb|EFW07643.1| signal recognition particle-docking protein FtsY [Streptococcus anginosus 1_2_62CV] Length = 497 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 112/257 (43%), Positives = 155/257 (60%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNWDFSHRP 111 I SD+GV VA + E L + ++ L V +I K++ K FN + + Sbjct: 234 ITSDVGVQVASNLTEALRQEARLENAKKPEALRRV--IIEKLVDIYEKDGQFNEKINLQD 291 Query: 112 --HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ K AG KVML A DTFR+ A+ QL W R Sbjct: 292 GLTVMLFVGVNGVGKTTSIGKLAYKYKQAGKKVMLVAADTFRAGAVAQLVEWGRRVDVPV 351 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V SD A++ Y+ ++A+A+ VD+L+IDTAGRL N LMA + K+ R++KR+DP A Sbjct: 352 VTGPEKSDPASVVYDGMERAKAENVDILMIDTAGRLQNKDNLMAELEKIGRIIKRVDPAA 411 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 412 PHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKLI 471 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 472 GFGEKIDDIGVFNSENF 488 >gi|320334177|ref|YP_004170888.1| signal recognition particle-docking protein FtsY [Deinococcus maricopensis DSM 21211] gi|319755466|gb|ADV67223.1| signal recognition particle-docking protein FtsY [Deinococcus maricopensis DSM 21211] Length = 319 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 124/314 (39%), Positives = 183/314 (58%), Gaps = 26/314 (8%) Query: 11 LSWIRKLTKGFASTSLKLKEGI----TDI--ISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +SW +L G + T +L + TD+ + + RLD E+LE LI +D+G A + Sbjct: 1 MSWFDRLRDGLSKTRQQLNTSVGFLGTDLKDVFTNRLD--TLEDLEYALIAADVGRAATE 58 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK----------PFNWDFSHRPH-- 112 +I+E++ + + ++Q L D L L P +K P + +P Sbjct: 59 EILEDI---KNSGKTNLQEALMDAMTL---QLEPDAKRAQFRKLGFTPDARRSTVQPEGR 112 Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 VI+++GVNGVGKTT I KL + G VM AAGDTFR+AA QL +W +R V Sbjct: 113 VIMMIGVNGVGKTTTIAKLGQYYGSRGQSVMFAAGDTFRAAAGAQLGVWGERLGIPVVQG 172 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 G D AA+A++A + +A+ D+L +DTAGRLHN LM + K+ RV+ + DP P Sbjct: 173 PDGGDPAAVAFDAAQARRARGTDLLFVDTAGRLHNKHNLMEELKKVRRVIDKADPGEPAE 232 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 V VLDA TGQN L+Q + FH G TG+++TK+DGTA+GG ++PIV +P+ F+GVG Sbjct: 233 VWLVLDAVTGQNGLQQAKKFHESIGLTGVVVTKLDGTAKGGIVVPIVRELGVPIKFIGVG 292 Query: 293 EGINDLEPFVAKDF 306 E +DL+PF +++F Sbjct: 293 ESADDLQPFDSREF 306 >gi|225567886|ref|ZP_03776911.1| hypothetical protein CLOHYLEM_03959 [Clostridium hylemonae DSM 15053] gi|225163287|gb|EEG75906.1| hypothetical protein CLOHYLEM_03959 [Clostridium hylemonae DSM 15053] Length = 325 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 135/304 (44%), Positives = 187/304 (61%), Gaps = 8/304 (2%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQK 65 + E + R+L G T + G+ +I S R+D+ EELE++LI D+GV Sbjct: 14 SGEKQGFFRRLVSGLTKTRDNIISGMDNIFSGFSRIDEEFYEELEEVLIMGDLGVQATDN 73 Query: 66 IVEELLTK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 I+E+L K R+ K+ S R L + + +M + + ++F R V++V+GVNGV Sbjct: 74 ILEDLKEKVRARHIKEPSECRQLL-IDSIKEQMDIGETA---YEFEDRTSVVMVIGVNGV 129 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+ K+ KV+LAA DTFR+AA +QLK WADR A+ + + GSD A++ Sbjct: 130 GKTTTIGKLAGKLRSRHKKVVLAAADTFRAAAGEQLKEWADRAQAELIGGQEGSDPASVV 189 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A A+A+ DVL+ DTAGRLHN LM + KM R++ R P A L VLDATTG Sbjct: 190 YDAVAAAKARHADVLLCDTAGRLHNKKNLMEELKKMNRIIDREFPDAYRETLVVLDATTG 249 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL Q + F+ VA TG+I+TKMDGTA+GG + I IPV ++GVGE I DL+ F Sbjct: 250 QNALMQAKEFNEVADITGIILTKMDGTAKGGIAVAIQAELGIPVKYIGVGETIEDLQKFD 309 Query: 303 AKDF 306 A +F Sbjct: 310 ADEF 313 >gi|293365544|ref|ZP_06612253.1| cell division protein FtsY [Streptococcus oralis ATCC 35037] gi|307703501|ref|ZP_07640443.1| signal recognition particle-docking protein FtsY [Streptococcus oralis ATCC 35037] gi|291315912|gb|EFE56356.1| cell division protein FtsY [Streptococcus oralis ATCC 35037] gi|307622908|gb|EFO01903.1| signal recognition particle-docking protein FtsY [Streptococcus oralis ATCC 35037] Length = 433 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 109/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K N+D F Sbjct: 170 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDEQIHFQD 227 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 228 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 287 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 288 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 347 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 348 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 407 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 408 GFGEKIDDIGEFNSENF 424 >gi|329117593|ref|ZP_08246310.1| signal recognition particle-docking protein FtsY [Streptococcus parauberis NCFD 2020] gi|326907998|gb|EGE54912.1| signal recognition particle-docking protein FtsY [Streptococcus parauberis NCFD 2020] Length = 537 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 116/272 (42%), Positives = 172/272 (63%), Gaps = 6/272 (2%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 RR+D+ EELE++LI SD+GV+VA ++ +EL + ++ L V ++ K++ Sbjct: 259 RRVDEEFFEELEEMLILSDVGVSVATRLTDELRQEVKLENAKKPEDLRRV--IVQKLVDI 316 Query: 99 LSKP--FNWDFSHRP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 K +N +++ V+L+VGVNGVGKTT IGKL+ K + G KVML A DTFR+ A Sbjct: 317 YEKDGVYNEAVNYQKGLTVMLLVGVNGVGKTTSIGKLAYKYKNEGKKVMLVAADTFRAGA 376 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 + QL W R V +D A++ ++ ++A ++ VD+L+IDTAGRL N LMA Sbjct: 377 VAQLAEWGRRVDVPVVMGPEKADPASVVFDGVERAVSENVDILLIDTAGRLQNKENLMAE 436 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + KM R++KR+ P APH L LDA+TGQNAL Q + F + TGLI+TK+DG+A+GG Sbjct: 437 LEKMGRIIKRVIPDAPHETLLALDASTGQNALSQAKEFSKIMSLTGLILTKIDGSAKGGV 496 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++ I IPV F+G GE I+D+ F +++F Sbjct: 497 VLAIRQELDIPVKFIGFGEKIDDIGQFDSEEF 528 >gi|306825132|ref|ZP_07458474.1| cell division protein FtsY [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432568|gb|EFM35542.1| cell division protein FtsY [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 433 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 109/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K N+D F Sbjct: 170 IMSDVGVQVASNLTEELRYEAKLENAKKPEALRRV--IIEKLVELYEKDGNYDEQIHFQD 227 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 228 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 287 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 288 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 347 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 348 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 407 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 408 GFGEKIDDIGEFNSENF 424 >gi|206890360|ref|YP_002249629.1| signal recognition particle-docking protein FtsY [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742298|gb|ACI21355.1| signal recognition particle-docking protein FtsY [Thermodesulfovibrio yellowstonii DSM 11347] Length = 301 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 113/251 (45%), Positives = 168/251 (66%), Gaps = 4/251 (1%) Query: 57 DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHVIL 115 D+GV ++I + +R K+ ++ DV ++ + L+ L K + + + P +IL Sbjct: 48 DVGVKATEEITG--ILRRKIKEGGIKDA-SDVKIVLKEELINLLKNNTSLNLKNTPSIIL 104 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VVGVNGVGKTT IGKL K + G V+ AA DTFR+AAI+QL+IWA + AD + + G Sbjct: 105 VVGVNGVGKTTTIGKLGYKFVNEGKSVVFAAADTFRAAAIEQLEIWAKKVGADIIKHKSG 164 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 +D AA+A++A + A+A+ D++IIDTAGRLH S LM + K+ RVLK+ P APH L Sbjct: 165 ADPAAIAFDALEHAKAQNKDIVIIDTAGRLHTKSPLMEELRKINRVLKKSIPEAPHETLL 224 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 ++DATTGQNA+RQ +F+ G TG+++TK+DGTA+GG + I IP+ +G+GEGI Sbjct: 225 IVDATTGQNAIRQASLFNEAIGLTGVVVTKLDGTAKGGVIFAIKKEIGIPIKLIGIGEGI 284 Query: 296 NDLEPFVAKDF 306 +DL+ F+ ++F Sbjct: 285 DDLKEFIPQEF 295 >gi|51246788|ref|YP_066672.1| cell division protein FtsY [Desulfotalea psychrophila LSv54] gi|50877825|emb|CAG37665.1| probable cell division protein FtsY [Desulfotalea psychrophila LSv54] Length = 470 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 106/264 (40%), Positives = 162/264 (61%), Gaps = 20/264 (7%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-----VSELIHK------MLMPLSKP 102 I +D+GV+ +I+E K K++S L + ++ I + ++MP S P Sbjct: 206 IMADLGVSTTDEILEFARRKAKRKELSDPAALKEAIKTKIASFIEEAQEDAELVMPESGP 265 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 F +I+V+GVNGVGKTT IGK++KK ++G VML A DTFR+AA+ QLKIW Sbjct: 266 F---------IIMVIGVNGVGKTTTIGKIAKKFVNSGNSVMLVAADTFRAAAVSQLKIWG 316 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 +R + G+D +++AY+A +A A++ DV++IDTAGRLH + LM + K+ RV+ Sbjct: 317 ERNEVPVFSRQEGADPSSVAYDAIAKAVAEEYDVVLIDTAGRLHTQTNLMEELKKIKRVI 376 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 + APH ++ V+DATTGQN + Q ++F+ G TG+ +TK+DGTA+GG + I Sbjct: 377 GKNCAGAPHEIMLVIDATTGQNGISQAKLFNDAVGITGITLTKLDGTAKGGIVANISREL 436 Query: 283 KIPVYFLGVGEGINDLEPFVAKDF 306 P+ F+G+GE I+DL F +F Sbjct: 437 DTPIRFIGIGEQIDDLRDFDHNEF 460 >gi|270292811|ref|ZP_06199022.1| signal recognition particle-docking protein FtsY [Streptococcus sp. M143] gi|270278790|gb|EFA24636.1| signal recognition particle-docking protein FtsY [Streptococcus sp. M143] Length = 436 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 109/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K N+D F Sbjct: 173 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDEQIHFQD 230 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 231 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 290 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 291 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 350 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 351 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 410 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 411 GFGEKIDDIGEFNSENF 427 >gi|306829602|ref|ZP_07462792.1| cell division protein FtsY [Streptococcus mitis ATCC 6249] gi|304428688|gb|EFM31778.1| cell division protein FtsY [Streptococcus mitis ATCC 6249] Length = 435 Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 109/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K N+D F Sbjct: 172 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDEQIHFQD 229 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 230 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 289 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 290 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 349 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 350 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 409 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 410 GFGEKIDDIGEFNSENF 426 >gi|322391784|ref|ZP_08065249.1| cell division protein FtsY [Streptococcus peroris ATCC 700780] gi|321145264|gb|EFX40660.1| cell division protein FtsY [Streptococcus peroris ATCC 700780] Length = 498 Score = 195 bits (496), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 109/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K N++ F Sbjct: 235 IMSDVGVQVASNLTEELRYEAKLENAKKPEALRRV--IIEKLVDLYEKDGNYNESINFQD 292 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 293 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 352 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ VD+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 353 VTGPEKADPASVVFDGMERAVAEGVDILMIDTAGRLQNKENLMAELEKIGRIIKRVVPEA 412 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 413 PHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIREELNIPVKLI 472 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 473 GFGEKIDDIGEFNSENF 489 >gi|225571978|ref|ZP_03780842.1| hypothetical protein RUMHYD_00272 [Blautia hydrogenotrophica DSM 10507] gi|225040511|gb|EEG50757.1| hypothetical protein RUMHYD_00272 [Blautia hydrogenotrophica DSM 10507] Length = 313 Score = 195 bits (496), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 125/306 (40%), Positives = 183/306 (59%), Gaps = 10/306 (3%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64 + E + ++L G + T + GI I S +D+ EE+E++LI D+G+ Sbjct: 1 MGEEKKGFFKRLVSGLSKTRANIVSGIDSIFSGFSSIDEDFYEEIEEILIMGDLGINATT 60 Query: 65 KIVEELL----TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 I+E L KR +++L D + +M + ++ ++F +R VILV+GVN Sbjct: 61 SIIENLKKQVEEKRIKDPAECKKLLID--SIKQEMTVGNTE---YEFENRKSVILVIGVN 115 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT +GKL+ K+ D G KV+LAA DTFR+AA +QL WA+R + + + G+D A+ Sbjct: 116 GVGKTTSVGKLAGKLKDQGKKVILAAADTFRAAAGEQLIQWANRAGVELIGGQPGADPAS 175 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++A A+A+ D+L+ DTAGRLHN LM + K+ R+L++ P A L VLD T Sbjct: 176 VVFDAVAAAKARNADILLCDTAGRLHNKKNLMEELRKIYRILEKEYPEAYLETLVVLDGT 235 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNAL Q F VA TG+I+TK+DGTA+GG + I IPV ++GVGE I DLE Sbjct: 236 TGQNALAQARQFAEVAKVTGIILTKLDGTAKGGIAVAIHSELDIPVKYIGVGESIEDLEK 295 Query: 301 FVAKDF 306 F A+ F Sbjct: 296 FNAESF 301 >gi|260892850|ref|YP_003238947.1| signal recognition particle-docking protein FtsY [Ammonifex degensii KC4] gi|260864991|gb|ACX52097.1| signal recognition particle-docking protein FtsY [Ammonifex degensii KC4] Length = 301 Score = 195 bits (496), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 132/283 (46%), Positives = 186/283 (65%), Gaps = 9/283 (3%) Query: 32 ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYD 87 I +++ R++D+ + EELED LI +D+GV ++++E+L + A+ V ++R+L + Sbjct: 22 IDNVLRRRKIDEELYEELEDTLILADVGVPATEELLEKLKARVKAERVEEVEDLRRLLQE 81 Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 E++H + P+ P VIL+VGVNG GKTT GKL+ G KV+LAA Sbjct: 82 --EILHLLGEPVPLLLP---PSPPAVILLVGVNGTGKTTTAGKLAYFFRQQGKKVLLAAA 136 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DTFR+AAIDQL+IWA+++ + FV + GSD AA+ ++A + A+A+ VDV+I DTAGRLH Sbjct: 137 DTFRAAAIDQLEIWAEKSGSLFVRQKEGSDPAAVVFDALQAAKARGVDVVIADTAGRLHT 196 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 S LMA +GK++RV R APH VL VLDATTGQNAL Q +F V G TG+++TK+D Sbjct: 197 KSHLMAELGKIVRVAAREVEGAPHEVLLVLDATTGQNALSQARLFKEVTGVTGIVLTKLD 256 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 GTA+GG +I I +PV F+G GE I DL PF +F I Sbjct: 257 GTAKGGVVIAIRKELGLPVKFIGTGEKIEDLAPFDPAEFVKAI 299 >gi|238916988|ref|YP_002930505.1| signal recognition particle receptor [Eubacterium eligens ATCC 27750] gi|238872348|gb|ACR72058.1| signal recognition particle receptor [Eubacterium eligens ATCC 27750] Length = 311 Score = 195 bits (496), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 121/301 (40%), Positives = 180/301 (59%), Gaps = 10/301 (3%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + KL +G T + GI + S +DD +ELE+ LI DIGV ++I+++ Sbjct: 1 MGFFSKLKEGLTKTRDNIVSGIDSVFSGFSSIDDDFYDELEETLIMGDIGVVATEEILDD 60 Query: 70 LLTK----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 L K + +++L D + KM + + ++F +R +++++GVNGVGKT Sbjct: 61 LKNKVKENKIKNPADCKQLLID--SIKEKMNLGENA---YEFENRKSIVMLIGVNGVGKT 115 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T +GKL+ + KV++AA DTFR+AAI+QL W++RT AD + GSD AA+ Y++ Sbjct: 116 TSVGKLAGLLKAQNKKVIMAAADTFRAAAIEQLTEWSNRTGADIIAQSEGSDPAAVIYDS 175 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 +A+K DVL+ DTAGRL N LM + K+ RV++R A L VLDATTGQNA Sbjct: 176 IAACKARKADVLLCDTAGRLQNKKNLMEELRKIDRVIEREYSDAYRENLIVLDATTGQNA 235 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L Q+ F+ V TG+I+TKMDGTA+GG + I IPV ++GVGE + DL+ F + Sbjct: 236 LSQLREFNDVTNITGIILTKMDGTAKGGIAVAIQAEFGIPVKYIGVGEKVEDLQKFDSDT 295 Query: 306 F 306 F Sbjct: 296 F 296 >gi|225856910|ref|YP_002738421.1| cell division protein FtsY [Streptococcus pneumoniae P1031] gi|225724623|gb|ACO20475.1| cell division protein FtsY [Streptococcus pneumoniae P1031] Length = 429 Score = 195 bits (496), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 109/257 (42%), Positives = 155/257 (60%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ VL V +I K++ K ++D F Sbjct: 166 IMSDVGVQVASNLTEELRYEAKLENAKKPDVLRRV--IIEKLVELYEKDGSYDESIHFQD 223 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 224 NLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 283 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 284 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 343 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 344 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 403 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 404 GFGEKIDDIGEFNSENF 420 >gi|116492611|ref|YP_804346.1| signal recognition particle-docking protein FtsY [Pediococcus pentosaceus ATCC 25745] gi|116102761|gb|ABJ67904.1| signal recognition particle-docking protein FtsY [Pediococcus pentosaceus ATCC 25745] Length = 406 Score = 195 bits (496), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 115/283 (40%), Positives = 171/283 (60%), Gaps = 11/283 (3%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL- 99 +D+ ++LE+ LI +D+G A +I EE+ + + VS +S+LI + L+ L Sbjct: 126 VDEDFYDDLEETLIEADVGFDTALEISEEVRDEIEFEHVSDPD---QISQLIVRRLVALY 182 Query: 100 -----SKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 ++ + FS P V L VGVNGVGKTT IGK++ + G KV+LAA DTFR+ Sbjct: 183 TRNGSAEDNHLVFSKEGPTVFLFVGVNGVGKTTSIGKMAARFKGRGRKVLLAACDTFRAG 242 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 AI QL+ W R D V + SD A++A+EA K+A+ + D+L++DTAGRL N LM Sbjct: 243 AIQQLQEWGKRDGVDVVAGKEQSDPASVAFEAVKKAKEENYDLLLVDTAGRLQNKVNLMN 302 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + K+ RV+ R P AP L VLD+TTGQNAL Q + F TG+I+TK+DGTA+GG Sbjct: 303 ELDKIKRVISREIPDAPQETLLVLDSTTGQNALTQAKAFLETTNVTGIILTKLDGTAKGG 362 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF-SAVITGCLD 315 ++ I + V ++G+GE ++DL PF + + S + G ++ Sbjct: 363 IVLAIRNQLHLAVKYVGLGETVDDLSPFNPEQYVSGLFKGLME 405 >gi|255658107|ref|ZP_05403516.1| signal recognition particle-docking protein FtsY [Mitsuokella multacida DSM 20544] gi|260849412|gb|EEX69419.1| signal recognition particle-docking protein FtsY [Mitsuokella multacida DSM 20544] Length = 304 Score = 195 bits (496), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 110/202 (54%), Positives = 141/202 (69%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P V+LV+GVNG GKTT IGKL+ G V+LAA DTFR+AAIDQL++W RT + Sbjct: 102 PTVLLVIGVNGAGKTTTIGKLAAYYKGQGKSVLLAAADTFRAAAIDQLEVWGQRTGVPVI 161 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 E GSD AA+A++A K A A+KVD+LIIDTAGRL S LM + K+ RV+ R P AP Sbjct: 162 KHEEGSDPAAVAFDAVKAAVARKVDMLIIDTAGRLQTKSNLMQELEKINRVIGREIPGAP 221 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 H L VLDATTGQNA+ Q E+F A TG+++TK+DGTA+GG +I I +PV ++G Sbjct: 222 HETLLVLDATTGQNAISQAELFTKAAPITGVVLTKLDGTAKGGVVIGIKSQLSMPVKWIG 281 Query: 291 VGEGINDLEPFVAKDFSAVITG 312 VGEG+ DL PF A+DF+ + G Sbjct: 282 VGEGVEDLRPFNAEDFAKALFG 303 >gi|169830830|ref|YP_001716812.1| signal recognition particle-docking protein FtsY [Candidatus Desulforudis audaxviator MP104C] gi|169637674|gb|ACA59180.1| signal recognition particle-docking protein FtsY [Candidatus Desulforudis audaxviator MP104C] Length = 304 Score = 195 bits (496), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 120/270 (44%), Positives = 170/270 (62%), Gaps = 7/270 (2%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDVSELIHKML 96 +D+ + EELE++LI++D+GV + ++V E + ++ ++ +L D + ++ Sbjct: 32 VDESLYEELEEILIQADVGVETSLELVARVRERMKAQKLDDPTKLKPILKDE---LRRIF 88 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 + N P VILVVGVNG GKTT IGKL+ + G KV+LAA DTFR+AAID Sbjct: 89 AGGDETANLRLDGDPTVILVVGVNGTGKTTSIGKLAHLLRRDGKKVLLAAADTFRAAAID 148 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL+IWA R + + G+D AA+ Y+A + A+A++ DVLIIDTAGRLH LM + Sbjct: 149 QLEIWAHRAGVELIRHGEGADPAAVVYDAIQAARAREYDVLIIDTAGRLHTRVNLMEELK 208 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 K+ RV+ R P AP VL VLDATTG NA+ Q ++F G TG+++TK+DGTA+GG + Sbjct: 209 KVFRVVSRELPGAPQEVLLVLDATTGHNAVNQAKIFGEAVGVTGIVLTKLDGTAKGGIVA 268 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 I + KIPV +G GE I DL F A +F Sbjct: 269 AIRNSQKIPVKLVGTGERIEDLSYFHAGEF 298 >gi|331266282|ref|YP_004325912.1| SRPR, signal recognition particle-docking protein [Streptococcus oralis Uo5] gi|326682954|emb|CBZ00571.1| SRPR, signal recognition particle-docking protein [Streptococcus oralis Uo5] Length = 433 Score = 195 bits (495), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 109/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K N+D F Sbjct: 170 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDEQIHFQD 227 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 228 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 287 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 288 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 347 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 348 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 407 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 408 GFGEKIDDIGEFNSENF 424 >gi|229822806|ref|ZP_04448876.1| hypothetical protein GCWU000282_00095 [Catonella morbi ATCC 51271] gi|229787619|gb|EEP23733.1| hypothetical protein GCWU000282_00095 [Catonella morbi ATCC 51271] Length = 340 Score = 195 bits (495), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 117/302 (38%), Positives = 178/302 (58%), Gaps = 14/302 (4%) Query: 14 IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG----VAVAQKIVE 68 I +G A T + +T++ +S R +D+ E+LE+ I +D+G +A+ I + Sbjct: 31 IDSYDQGTAKTRRNFTDIMTNLFTSFREVDEEFYEDLEEAFIGADVGFAMTIAITDAIRD 90 Query: 69 ELLTKRYAKDVSVQRVLYD----VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 E+ K V+RVL + V E + L+ L + N D P VIL VGVNGVGK Sbjct: 91 EIERTGVHKPEDVKRVLLEKMVQVYERGGQNLVSLKE--NPD---GPTVILFVGVNGVGK 145 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT +GK+ ++ G KV++AA DTFR+ A++QL +W +R V + D AA+ Y+ Sbjct: 146 TTSVGKIGYQLKQEGHKVLMAAADTFRAGAVEQLNVWGERLDIPVVTGKAQGDPAAVVYD 205 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A K+A A+ D L++DTAGRL + LM + K+ R+++R +P+ VL LDATTGQN Sbjct: 206 AVKKANAEGYDYLLVDTAGRLQTKANLMEELAKIKRIIERENPNGVQEVLLALDATTGQN 265 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 AL Q + F+ TGL++TK+DGTA+GG ++ I IPV ++G+GE DL+ F A+ Sbjct: 266 ALIQAKQFNEATEITGLVLTKLDGTAKGGVVLSIRYELDIPVKYIGLGEKATDLKKFDAE 325 Query: 305 DF 306 + Sbjct: 326 AY 327 >gi|325677818|ref|ZP_08157460.1| signal recognition particle-docking protein FtsY [Ruminococcus albus 8] gi|324110372|gb|EGC04546.1| signal recognition particle-docking protein FtsY [Ruminococcus albus 8] Length = 301 Score = 195 bits (495), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 112/251 (44%), Positives = 164/251 (65%), Gaps = 2/251 (0%) Query: 56 SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115 SDIGV + KI +++ K ++ + DV + + ++ +P D S P VIL Sbjct: 47 SDIGVNTSVKICDKVRDYVKQKGITDPTAIKDVLKDVIAEMLGEEQPL--DLSTTPSVIL 104 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 V+GVNGVGKTT IGKL+ ++ + G +V++AA DTFR+AAIDQL++W DR + + + G Sbjct: 105 VIGVNGVGKTTTIGKLANQLKNEGKRVIVAAADTFRAAAIDQLEVWTDRAGVELIKHKEG 164 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ ++A A+A++ DV+I DTAGRLHN LM + K+ R++ + VL Sbjct: 165 SDPAAVVFDALTAAKARQADVVICDTAGRLHNKKNLMNELEKISRIVHQQAEGCALEVLL 224 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 LDATTGQNA+ Q + F+ A TG+I+TK+DGTA+GG +I I KIPV + VGE I Sbjct: 225 ALDATTGQNAVNQAQQFNEAANITGIILTKLDGTAKGGIVITICDDLKIPVKLVTVGEKI 284 Query: 296 NDLEPFVAKDF 306 +D++PF+A+DF Sbjct: 285 DDIQPFIARDF 295 >gi|312898600|ref|ZP_07757990.1| signal recognition particle-docking protein FtsY [Megasphaera micronuciformis F0359] gi|310620519|gb|EFQ04089.1| signal recognition particle-docking protein FtsY [Megasphaera micronuciformis F0359] Length = 315 Score = 195 bits (495), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 122/299 (40%), Positives = 182/299 (60%), Gaps = 4/299 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + KL T L GI T ++ +DD + ++LE +++ DIG+ ++E+ Sbjct: 1 MGFFSKLKDSLEKTKKSLFTGIETVVLGYANIDDEMYDDLEAVMLTGDIGIETTDYLLEQ 60 Query: 70 LLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + +K++ V+ + +++ K+L +P D VI +VGVNGVGKTT I Sbjct: 61 IREGVKSKEIKDGSDVVPYLEKVVVKLLEENDEP-EQDMEG-TKVIFIVGVNGVGKTTTI 118 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+K ++ G VM+AAGDTFR+AA DQL IWA R + G+DAAA+ Y+A Sbjct: 119 GKLAKYYTEHGKSVMIAAGDTFRAAASDQLTIWAQRVGVPIIKHREGADAAAVVYDATAS 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ D+L++DTAGRLH + LM + KM RV + APH L VLDATTGQNA+ Q Sbjct: 179 AKARHADILLVDTAGRLHTKNNLMEELRKMARVAAKNVEGAPHETLLVLDATTGQNAVSQ 238 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 ++F V TG+++TK+DGTA+GG ++ I +PV ++GVGEG +DL+PF A F+ Sbjct: 239 AKLFGEVVPLTGVVLTKLDGTAKGGIVLSIKRILGVPVRWVGVGEGADDLQPFDAAQFA 297 >gi|139474212|ref|YP_001128928.1| cell division protein FtsY [Streptococcus pyogenes str. Manfredo] gi|134272459|emb|CAM30716.1| putative cell division protein FtsY [Streptococcus pyogenes str. Manfredo] Length = 516 Score = 195 bits (495), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 111/259 (42%), Positives = 158/259 (61%), Gaps = 6/259 (2%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP--FNWDFSH 109 +LI SD+GV VA + EEL + ++ L V ++ K++ K +N ++ Sbjct: 251 MLILSDVGVHVATTLTEELRYEAKLENAKKPDALKRV--IVEKLVGIYEKDGRYNEAINY 308 Query: 110 RP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 + V+L VGVNGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R Sbjct: 309 QDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDV 368 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + +D A++ ++ ++A AK VD+L+IDTAGRL N LMA + KM R++KR+ P Sbjct: 369 PVITGPEKADPASVVFDGMEKAVAKGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVLP 428 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 APH L LDA+TGQNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV Sbjct: 429 DAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVK 488 Query: 288 FLGVGEGINDLEPFVAKDF 306 F+G GE ++D+ F ++DF Sbjct: 489 FIGFGEKVDDIGEFHSEDF 507 >gi|258645803|ref|ZP_05733272.1| signal recognition particle-docking protein FtsY [Dialister invisus DSM 15470] gi|260403173|gb|EEW96720.1| signal recognition particle-docking protein FtsY [Dialister invisus DSM 15470] Length = 313 Score = 195 bits (495), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 126/310 (40%), Positives = 187/310 (60%), Gaps = 9/310 (2%) Query: 11 LSWIRKLTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + ++ K+ G T L + I T +I ++DD E+LE +L+ D+GV ++ + Sbjct: 1 MGFLDKVRNGLKKTKESLIKNIETVVIGYAKIDDDFLEDLEMVLLSGDLGVRTTDYLMRQ 60 Query: 70 LLTKRYAKD---VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 + +R + S V+ + + + ML K D SH P V LVVGVNGVGKTT Sbjct: 61 I--RRGVTEGMISSTNEVMPFMEKTVVNMLTEDGKE---DISHHPEVYLVVGVNGVGKTT 115 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKLS + G KV+LAA DTFR+AA +QL IWA RT AD V G+D AA+A++A Sbjct: 116 TIGKLSAQFRKEGKKVLLAAADTFRAAASEQLSIWAKRTGADIVKHAEGADPAAVAFDAV 175 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A+A+ DV++IDTAGRL LM + K+ RV+K++ P APH + VLDATTGQNA+ Sbjct: 176 SAAKARGSDVVLIDTAGRLQTKVNLMEELAKISRVVKKVIPDAPHQTILVLDATTGQNAV 235 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q + F + TG+++TK+DGTA+GG ++ I +P+ ++G+GE +DL+ F A +F Sbjct: 236 SQAQNFGEIVPLTGVVLTKLDGTAKGGVVLSIHEELHVPIRWIGLGEREDDLQRFNALEF 295 Query: 307 SAVITGCLDY 316 + + D+ Sbjct: 296 AKALFETEDH 305 >gi|332074854|gb|EGI85326.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae GA41301] gi|332200691|gb|EGJ14763.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae GA41317] Length = 401 Score = 195 bits (495), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 109/257 (42%), Positives = 155/257 (60%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ VL V +I K++ K ++D F Sbjct: 138 IMSDVGVQVASNLTEELRYEAKLENAKKPDVLRRV--IIEKLVELYEKDGSYDESIHFQD 195 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 196 NLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 255 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 256 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 315 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 316 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 375 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 376 GFGEKIDDIGEFNSENF 392 >gi|306827790|ref|ZP_07461061.1| cell division protein FtsY [Streptococcus pyogenes ATCC 10782] gi|304430014|gb|EFM33052.1| cell division protein FtsY [Streptococcus pyogenes ATCC 10782] Length = 516 Score = 195 bits (495), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 111/260 (42%), Positives = 159/260 (61%), Gaps = 8/260 (3%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFS 108 +LI SD+GV VA + EEL RY + + + +I + L+ + + +N + Sbjct: 251 MLILSDVGVHVATTLTEEL---RYEAKLENAKKPDALKRVIVEKLVDIYEKDGRYNEAIN 307 Query: 109 HRP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 ++ V+L VGVNGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R Sbjct: 308 YQDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVD 367 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + +D A++ ++ ++A AK VD+L+IDTAGRL N LMA + KM R++KR+ Sbjct: 368 VPVITGPEKADPASVVFDGMEKAVAKGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVL 427 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH L LDA+TGQNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV Sbjct: 428 PDAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPV 487 Query: 287 YFLGVGEGINDLEPFVAKDF 306 F+G GE ++D+ F ++DF Sbjct: 488 KFIGFGEKVDDIGEFHSEDF 507 >gi|110004076|emb|CAK98415.1| cell division protein ftsy [Spiroplasma citri] Length = 328 Score = 195 bits (495), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 115/294 (39%), Positives = 172/294 (58%), Gaps = 13/294 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 KL K T L I + ++ DD EELE++LI SD+G+ + +I ++ K+ Sbjct: 18 KLEKALRKTRLTFSNDIKKLAHKYKKYDDQYLEELEEILIASDMGMNMVLQITNQI-RKK 76 Query: 75 YAKDVSVQRVLYDVSELIHKMLM-----PLSKPFNWDFS-HRPHVILVVGVNGVGKTTVI 128 K S++ D ++ + +++M P SK + R +VIL+VGVNG GKTT I Sbjct: 77 VRKGWSIE----DTNDYLVEVIMDLYNDPKSKQNKLNIKDQRLNVILMVGVNGAGKTTTI 132 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAAALAYEAFK 187 KL+K+ D V+L AGDTFR+ A++QL WA+R + V + G D A++ Y+ Sbjct: 133 AKLAKQFLDQKKSVLLVAGDTFRAGAVEQLNQWAERLYVNIVKPLKEGQDPASVIYDGLV 192 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 Q + ++VD++IIDTAGRL N LM + K+ R++KR P APH L V+D TGQN + Sbjct: 193 QGKKEQVDIIIIDTAGRLQNKVNLMNELNKINRIIKREIPDAPHETLLVIDGVTGQNGIS 252 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 Q + F V +G+++TKMDGTA+GG ++ I IPV +G+GE DL+ F Sbjct: 253 QAKNFSEVTDVSGIVLTKMDGTAKGGVVLAIKDQLNIPVKLIGLGEQPVDLQEF 306 >gi|307704940|ref|ZP_07641831.1| signal recognition particle-docking protein FtsY [Streptococcus mitis SK597] gi|307621554|gb|EFO00600.1| signal recognition particle-docking protein FtsY [Streptococcus mitis SK597] Length = 420 Score = 195 bits (495), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 109/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K N+D F Sbjct: 157 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDESIHFQD 214 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 215 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 274 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 275 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 334 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 335 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 394 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 395 GFGEKIDDIGEFNSENF 411 >gi|94993890|ref|YP_601988.1| cell division protein ftsY [Streptococcus pyogenes MGAS10750] gi|94547398|gb|ABF37444.1| Cell division protein ftsY [Streptococcus pyogenes MGAS10750] Length = 516 Score = 195 bits (495), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 111/260 (42%), Positives = 159/260 (61%), Gaps = 8/260 (3%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFS 108 +LI SD+GV VA + EEL RY + + + +I + L+ + + +N + Sbjct: 251 MLILSDVGVHVATTLTEEL---RYEAKLENAKKPDALKRVIVEKLVDIYEKDGRYNEAIN 307 Query: 109 HRP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 ++ V+L VGVNGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R Sbjct: 308 YQDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVD 367 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + +D A++ ++ ++A AK VD+L+IDTAGRL N LMA + KM R++KR+ Sbjct: 368 VPVITGPEKADPASVVFDGMEKAVAKGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVL 427 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH L LDA+TGQNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV Sbjct: 428 PDAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPV 487 Query: 287 YFLGVGEGINDLEPFVAKDF 306 F+G GE ++D+ F ++DF Sbjct: 488 KFIGFGEKVDDIGEFHSEDF 507 >gi|15674659|ref|NP_268833.1| putative signal recognition particle [Streptococcus pyogenes M1 GAS] gi|50913842|ref|YP_059814.1| cell division protein ftsY [Streptococcus pyogenes MGAS10394] gi|71910285|ref|YP_281835.1| cell division protein [Streptococcus pyogenes MGAS5005] gi|13621775|gb|AAK33554.1| putative signal recognition particle (docking protein) [Streptococcus pyogenes M1 GAS] gi|50902916|gb|AAT86631.1| Cell division protein ftsY [Streptococcus pyogenes MGAS10394] gi|71853067|gb|AAZ51090.1| cell division protein [Streptococcus pyogenes MGAS5005] Length = 516 Score = 195 bits (495), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 111/260 (42%), Positives = 159/260 (61%), Gaps = 8/260 (3%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFS 108 +LI SD+GV VA + EEL RY + + + +I + L+ + + +N + Sbjct: 251 MLILSDVGVHVATTLTEEL---RYEAKLENAKKPDALKRVIVEKLVDIYEKDGRYNEAIN 307 Query: 109 HRP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 ++ V+L VGVNGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R Sbjct: 308 YQDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVD 367 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + +D A++ ++ ++A AK VD+L+IDTAGRL N LMA + KM R++KR+ Sbjct: 368 VPVITGPEKADPASVVFDGMEKAVAKGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVL 427 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH L LDA+TGQNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV Sbjct: 428 PDAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPV 487 Query: 287 YFLGVGEGINDLEPFVAKDF 306 F+G GE ++D+ F ++DF Sbjct: 488 KFIGFGEKVDDIGEFHSEDF 507 >gi|209559035|ref|YP_002285507.1| Signal recognition particle receptor protein FtsY alpha subunit [Streptococcus pyogenes NZ131] gi|209540236|gb|ACI60812.1| Signal recognition particle receptor protein FtsY alpha subunit [Streptococcus pyogenes NZ131] Length = 516 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 111/260 (42%), Positives = 159/260 (61%), Gaps = 8/260 (3%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFS 108 +LI SD+GV VA + EEL RY + + + +I + L+ + + +N + Sbjct: 251 MLILSDVGVHVATTLTEEL---RYEAKLENAKKPDALKRVIVEKLVDIYEKDGRYNEAIN 307 Query: 109 HRP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 ++ V+L VGVNGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R Sbjct: 308 YQDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVD 367 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + +D A++ ++ ++A AK VD+L+IDTAGRL N LMA + KM R++KR+ Sbjct: 368 VPVITGPEKADPASVVFDGMEKAVAKGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVL 427 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH L LDA+TGQNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV Sbjct: 428 PDAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPV 487 Query: 287 YFLGVGEGINDLEPFVAKDF 306 F+G GE ++D+ F ++DF Sbjct: 488 KFIGFGEKVDDIGEFHSEDF 507 >gi|21909937|ref|NP_664205.1| putative signal recognition particle-docking protein FtsY [Streptococcus pyogenes MGAS315] gi|21904125|gb|AAM79008.1| putative signal recognition particle-docking protein FtsY [Streptococcus pyogenes MGAS315] Length = 516 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 110/259 (42%), Positives = 157/259 (60%), Gaps = 6/259 (2%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----F 107 +LI SD+GV VA + EEL + ++ L V ++ K++ K +++ + Sbjct: 251 MLILSDVGVHVATTLTEELRYEAKLENAKKPDALKRV--IVEKLVDIYEKDGHYNEAINY 308 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 V+L VGVNGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R Sbjct: 309 QDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDV 368 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + +D A++ ++ ++A AK VD+L+IDTAGRL N LMA + KM R++KR+ P Sbjct: 369 PVITGPEKADPASVVFDGMEKAVAKGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVLP 428 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 APH L LDA+TGQNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV Sbjct: 429 DAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVK 488 Query: 288 FLGVGEGINDLEPFVAKDF 306 F+G GE ++D+ F ++DF Sbjct: 489 FIGFGEKVDDIGEFHSEDF 507 >gi|71903119|ref|YP_279922.1| cell division protein [Streptococcus pyogenes MGAS6180] gi|71802214|gb|AAX71567.1| cell division protein [Streptococcus pyogenes MGAS6180] Length = 516 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 111/260 (42%), Positives = 159/260 (61%), Gaps = 8/260 (3%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFS 108 +LI SD+GV VA + EEL RY + + + +I + L+ + + +N + Sbjct: 251 MLILSDVGVHVATTLTEEL---RYEAKLENAKKPDALKRVIVEKLVDIYEKDGRYNEAIN 307 Query: 109 HRP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 ++ V+L VGVNGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R Sbjct: 308 YQDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVD 367 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + +D A++ ++ ++A AK VD+L+IDTAGRL N LMA + KM R++KR+ Sbjct: 368 VPVITGPEKADPASVVFDGMEKAVAKGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVL 427 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH L LDA+TGQNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV Sbjct: 428 PDAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPV 487 Query: 287 YFLGVGEGINDLEPFVAKDF 306 F+G GE ++D+ F ++DF Sbjct: 488 KFIGFGEKVDDIGEFHSEDF 507 >gi|322375334|ref|ZP_08049847.1| signal recognition particle-docking protein FtsY [Streptococcus sp. C300] gi|321279597|gb|EFX56637.1| signal recognition particle-docking protein FtsY [Streptococcus sp. C300] Length = 351 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 109/257 (42%), Positives = 155/257 (60%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K N+D F Sbjct: 88 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDEQIHFQD 145 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + + AG KVML A DTFR+ A+ QL W R Sbjct: 146 GLTVMLFVGVNGVGKTTSIGKLAHRYNQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 205 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 206 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 265 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 266 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 325 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 326 GFGEKIDDIGEFNSENF 342 >gi|28896366|ref|NP_802716.1| signal recognition particle (docking protein) [Streptococcus pyogenes SSI-1] gi|28811617|dbj|BAC64549.1| putative signal recognition particle (docking protein) [Streptococcus pyogenes SSI-1] Length = 516 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 110/259 (42%), Positives = 157/259 (60%), Gaps = 6/259 (2%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----F 107 +LI SD+GV VA + EEL + ++ L V ++ K++ K +++ + Sbjct: 251 MLILSDVGVHVATTLTEELRYEAKLENAKKPDALKRV--IVEKLVDIYEKDGHYNEAINY 308 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 V+L VGVNGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R Sbjct: 309 QDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDV 368 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + +D A++ ++ ++A AK VD+L+IDTAGRL N LMA + KM R++KR+ P Sbjct: 369 PVITGPEKADPASVVFDGMEKAVAKGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVLP 428 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 APH L LDA+TGQNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV Sbjct: 429 DAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVK 488 Query: 288 FLGVGEGINDLEPFVAKDF 306 F+G GE ++D+ F ++DF Sbjct: 489 FIGFGEKVDDIGEFHSEDF 507 >gi|331269656|ref|YP_004396148.1| signal recognition particle-docking protein FtsY [Clostridium botulinum BKT015925] gi|329126206|gb|AEB76151.1| signal recognition particle-docking protein FtsY [Clostridium botulinum BKT015925] Length = 302 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/296 (41%), Positives = 189/296 (63%), Gaps = 3/296 (1%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + KL G A T E +++++ + ++DD + EELE++LI +DIGV + ++++ + Sbjct: 4 NLFNKLKDGLAKTKNNFTEKVSEVLKLAVKIDDELFEELEEILITADIGVDTSLEVIDRV 63 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K K ++ + +YD L ++ L++ + P ILV+GVNG GKTT IGK Sbjct: 64 RDKVKEKRITDPKEVYDC--LKEVLIEILTEEDKKEEGSMPKTILVIGVNGAGKTTSIGK 121 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +S K+ G KV++AA DTFR+AAIDQL++W++R+ D + + GSD A++ ++A + ++ Sbjct: 122 ISHKLKHEGHKVIMAAADTFRAAAIDQLEVWSNRSGVDIIRHQEGSDPASVVFDAIQASK 181 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+K DVLI DTAGRLHN LM + K+ R++ R + L VLD TTGQNAL+Q + Sbjct: 182 ARKADVLICDTAGRLHNKKNLMNELEKINRIIDREYSDSNKETLLVLDGTTGQNALQQAK 241 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F V G+++TK+DGTA+GG +I I IPV F+GVGEGI+DL+ F A+ F Sbjct: 242 QFAEVCPIDGIVITKLDGTAKGGVIIAIKHQLDIPVKFIGVGEGIDDLQEFDAESF 297 >gi|300214421|gb|ADJ78837.1| Cell division protein [Lactobacillus salivarius CECT 5713] Length = 423 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 110/260 (42%), Positives = 154/260 (59%), Gaps = 8/260 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-----KPFNWDF 107 LI +D+G A KI +EL + ++ + + D +I K++ + N F Sbjct: 153 LIEADVGFETAMKISDELRQEVKLRNAKKKNEISDA--IIEKLVEIYENEGKEEDNNLHF 210 Query: 108 S-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 S P V L VGVNGVGKTT IGKL+ + G KVMLAA DTFR+ AI+QL W R Sbjct: 211 SSEEPTVFLFVGVNGVGKTTTIGKLAHRYKMEGKKVMLAAADTFRAGAIEQLAEWGRRVG 270 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 V SD AA+ ++A K+A+ + D+L++DTAGRL N LM + K+ RV+ R Sbjct: 271 VTVVKKVEKSDPAAVVFDAVKKAKEEDYDILLVDTAGRLQNKVNLMKELEKIARVITREI 330 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL LDATTGQNAL Q + F V TG+++TK+DGTA+GG ++ I +PV Sbjct: 331 PDAPHEVLLALDATTGQNALTQAKQFKDVTNVTGIVLTKLDGTAKGGIVLAIRNELHLPV 390 Query: 287 YFLGVGEGINDLEPFVAKDF 306 +G+GE ++DL F +++ Sbjct: 391 KLVGLGEKMDDLRDFSPEEY 410 >gi|317050690|ref|YP_004111806.1| signal recognition particle-docking protein FtsY [Desulfurispirillum indicum S5] gi|316945774|gb|ADU65250.1| signal recognition particle-docking protein FtsY [Desulfurispirillum indicum S5] Length = 353 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/301 (40%), Positives = 183/301 (60%), Gaps = 7/301 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +L + TS L + I ++ + +DD +ELE++ + +D+GV +I++ L+ + Sbjct: 44 RLKSRLSRTSSALTQRIEALVPGKTTIDDEYLDELEEVFLSADVGVKTTMEIMD-LVREN 102 Query: 75 YAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLS 132 + + +V D+ + + + +S P + +PHVILV+GVNG GKTT GKL+ Sbjct: 103 VGRSL---KVPGDIQPFLRREIGRMISLPAKAETEPAKPHVILVIGVNGSGKTTTTGKLA 159 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 K G KV+LAA DTFR+AAI+QL +WA+RT A V + G+D +A+AY+A K A ++ Sbjct: 160 HKFIGQGKKVVLAAADTFRAAAIEQLAMWAERTGAHIVKHQHGADPSAVAYDATKAALSR 219 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 DVL+IDTAGRLH S LM + K+ RV+ R P APH VLD TTGQNAL Q F Sbjct: 220 HADVLLIDTAGRLHTKSNLMDELSKIERVIGRDIPGAPHETWLVLDGTTGQNALNQARQF 279 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 TG ++TK+D T++GG +I I+ +PV ++G+GEG+ DL+ F A+ F I G Sbjct: 280 LQSVKITGFVLTKLDSTSKGGAIIGIIRELGVPVRYIGIGEGVEDLQEFDAESFVDAIFG 339 Query: 313 C 313 Sbjct: 340 V 340 >gi|297588524|ref|ZP_06947167.1| cell division protein FtsY [Finegoldia magna ATCC 53516] gi|297573897|gb|EFH92618.1| cell division protein FtsY [Finegoldia magna ATCC 53516] Length = 378 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 122/319 (38%), Positives = 187/319 (58%), Gaps = 18/319 (5%) Query: 6 VASESLSWIRKLTK-GF----ASTSLKLKEGITDIISS-----RRLDDGVREELEDLLIR 55 V SE ++ ++ K GF ++ LK ++ I++ I R +D+ + EE+E+ LI Sbjct: 62 VESEEINEDKEENKEGFFEKLKNSLLKTRDNISNKIDQVLANYRTVDEELFEEIEETLIS 121 Query: 56 SDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111 +DIGV KIV +L K ++ ++ VL D+ + + ++ N + + Sbjct: 122 ADIGVETTLKIVGQLRDKVKLNNIQDPSKIKNVLADI---LKENIINDKIDNNLNVDDKT 178 Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 +ILVVGVNGVGKTT IGKL+ K G KV++ A DTFR+AAI+QL WA+R D + Sbjct: 179 -IILVVGVNGVGKTTTIGKLAMKFKKDGKKVLMVAADTFRAAAIEQLTEWANRAKVDIIS 237 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 + GSD A++ ++ +++ D+LI DTAGRLHN LM + K+ RV+++ P A Sbjct: 238 HKEGSDPASVVFDGVSAMKSRNADILICDTAGRLHNKKNLMNELNKIKRVIEKEYPEAKK 297 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 +L ++D TTGQNA+ Q + F TG I+TK+DGTA+GG + P+ + IPV F+G+ Sbjct: 298 EILLIVDGTTGQNAIIQAKEFMNATDLTGAIITKLDGTAKGGMIFPLEMELGIPVKFIGI 357 Query: 292 GEGINDLEPFVAKDFSAVI 310 GE +NDL F + F I Sbjct: 358 GEQVNDLVKFEPEKFIEAI 376 >gi|34556528|ref|NP_906343.1| signal recognition particle protein [Wolinella succinogenes DSM 1740] gi|34482242|emb|CAE09243.1| SIGNAL RECOGNITION PARTICLE PROTEIN [Wolinella succinogenes] Length = 300 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 107/287 (37%), Positives = 169/287 (58%), Gaps = 7/287 (2%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH 93 ++++ +R +E LE++LI SD+ + + ++E L + +++ V + E + Sbjct: 17 ELLAPKRASKISKELLEEILITSDMEYELVESLLEPLGEEVSQRELEVALHRFFRGESYY 76 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 + P RP + LV+GVNG GKTT I KL+ G V+L AGDTFR+A Sbjct: 77 DRIAP------KRIEARPCITLVMGVNGAGKTTTIAKLTSLYQREGKSVLLGAGDTFRAA 130 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 AI+QLK+WA+R +A V ++ G D +A+AY+ A+KVD +IIDTAGRLHN + L Sbjct: 131 AIEQLKLWAERLNAGIVYTQQGHDPSAVAYDTIISGVARKVDHVIIDTAGRLHNQTNLKN 190 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + K+ + + APH L VLD T G +A+ Q ++FH G G+I+TK+DGT++GG Sbjct: 191 ELIKIAKTCDKAFSGAPHQKLLVLDGTQGSSAIDQAKIFHETLGVDGIIITKLDGTSKGG 250 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEK 320 L I+ ++P+ ++GVGE DL PF +++ + G + + EEK Sbjct: 251 ALFSIMQRLRVPILYIGVGERAEDLIPFSEEEYVKTLLGAI-FDEEK 296 >gi|302386301|ref|YP_003822123.1| signal recognition particle-docking protein FtsY [Clostridium saccharolyticum WM1] gi|302196929|gb|ADL04500.1| signal recognition particle-docking protein FtsY [Clostridium saccharolyticum WM1] Length = 313 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 126/304 (41%), Positives = 185/304 (60%), Gaps = 4/304 (1%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67 E + KL G T + G+ I S +DD EE+E++LI D+G+ I+ Sbjct: 3 EKKGFFGKLVAGLQKTRDNIIAGVDSIFSGFSAIDDEFYEEIEEILIMGDLGIQTTMSIM 62 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTT 126 EEL ++ K+ +++ L L+ ++ + N ++F + V+LV+GVNGVGKTT Sbjct: 63 EEL--RKKVKEQNIKDPLECKQLLMDSIMEQMDLGENAYEFEKQRSVLLVIGVNGVGKTT 120 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 +GKL+ +M D G KV++AA DTFR+AAI+QL WA R D + + GSD AA+ ++A Sbjct: 121 SVGKLAGQMKDDGKKVIVAAADTFRAAAIEQLSEWAKRAGVDIIAQQEGSDPAAVVFDAV 180 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A+++ D+LI DTAGRLHN LM + K+ R++ + P A L VLD TTGQNAL Sbjct: 181 AAAKSRHADILICDTAGRLHNKKNLMEELKKINRIIDKEYPEAYRETLVVLDGTTGQNAL 240 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q + F VA TG+I+TK+DGTA+GG + I IPV ++GVGE I+DL+ F AK+F Sbjct: 241 VQAKQFMEVADITGIILTKLDGTAKGGIAVAIQSELGIPVKYIGVGEKIDDLQKFNAKEF 300 Query: 307 SAVI 310 + + Sbjct: 301 VSAL 304 >gi|322389956|ref|ZP_08063496.1| cell division protein FtsY [Streptococcus parasanguinis ATCC 903] gi|321143392|gb|EFX38830.1| cell division protein FtsY [Streptococcus parasanguinis ATCC 903] Length = 552 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 110/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K ++ F Sbjct: 289 IMSDVGVQVASNLTEELRYEARLENAKKPDALKRV--IIEKLVDLYEKDGQFNEAIRFQD 346 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R Sbjct: 347 GLTVMLFVGVNGVGKTTSIGKLAHRYKQEGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 406 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V SD A++ ++ ++A A+ +DVL+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 407 VTGPEKSDPASVVFDGIERAIAENIDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 466 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH L LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 467 PHETLLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIREELDIPVKLI 526 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ PF +++F Sbjct: 527 GFGEKIDDIGPFHSENF 543 >gi|315613256|ref|ZP_07888165.1| signal recognition particle-docking protein FtsY [Streptococcus sanguinis ATCC 49296] gi|315314491|gb|EFU62534.1| signal recognition particle-docking protein FtsY [Streptococcus sanguinis ATCC 49296] Length = 429 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 109/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K N+D F Sbjct: 166 ILSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDEQIHFQD 223 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 224 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 283 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 284 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 343 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 344 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 403 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 404 GFGEKIDDIGEFNSENF 420 >gi|303242099|ref|ZP_07328590.1| signal recognition particle-docking protein FtsY [Acetivibrio cellulolyticus CD2] gi|302590393|gb|EFL60150.1| signal recognition particle-docking protein FtsY [Acetivibrio cellulolyticus CD2] Length = 302 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 130/298 (43%), Positives = 193/298 (64%), Gaps = 4/298 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + KL +G T + E I + +S ++D+ + EELE++LI SD+G + +I+E+ Sbjct: 1 MGFFDKLKEGLKKTKNVITERIDQVLVSFGKIDEELFEELEEVLITSDVGAETSLRIIED 60 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVI 128 + K+ KD V L L ++ LSK + P VI+VVGVNGVGKTT I Sbjct: 61 I--KKKVKDNKVTDPLKVKGLLKEELSEILSKESTELNIKTTPSVIVVVGVNGVGKTTSI 118 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GK++ ++ +G KV++AAGDTFR+AAIDQL+IWADR D + G+D AA+ Y+A + Sbjct: 119 GKIANQLKQSGKKVVMAAGDTFRAAAIDQLEIWADRVGVDLIKHAEGADPAAVIYDAVQS 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 +A+K DVLI DTAGRLH LM + K+ R+++R P+A VL VLDATTGQNA+ Q Sbjct: 179 VKARKADVLICDTAGRLHTKKNLMDELKKVFRIIERELPNASMEVLLVLDATTGQNAIVQ 238 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F V+ +G+++TK+DGTA+GG +I + KIPV +GVGE ++DL+ F +++F Sbjct: 239 AKTFAEVSPVSGIVLTKLDGTAKGGIVIAVSSELKIPVKLIGVGEQMDDLQRFNSEEF 296 >gi|266623886|ref|ZP_06116821.1| signal recognition particle-docking protein FtsY [Clostridium hathewayi DSM 13479] gi|288864299|gb|EFC96597.1| signal recognition particle-docking protein FtsY [Clostridium hathewayi DSM 13479] Length = 313 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 126/305 (41%), Positives = 184/305 (60%), Gaps = 12/305 (3%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66 SE + KL G T + G+ I S +DD EE+E+ LI D+G+ I Sbjct: 2 SEKKGFFGKLVAGLQKTRDNIISGMDSIFSGFSAIDDEFYEEIEETLIMGDLGIQTTMSI 61 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPHVILVVGVNG 121 VE+L ++ K+ ++ D SE ++ + + +++ +R V+L++GVNG Sbjct: 62 VEDL--RKKVKEQGIK----DPSECKELLMESIRDQMDLGENAYEYENRQSVLLIIGVNG 115 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT +GKL+ ++ D G KV+LAA DTFR+AAI+QL WA+R D + + GSD AA+ Sbjct: 116 VGKTTSVGKLAGQLKDDGKKVILAAADTFRAAAIEQLTEWANRAGVDIIAQQEGSDPAAV 175 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 Y+A A++++ D+LI DTAGRLHN LM + K+ R++ + P A L VLD TT Sbjct: 176 VYDAVAAAKSRRADILICDTAGRLHNKKNLMEELKKINRIIDKEFPEAYRETLVVLDGTT 235 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL Q F VA TG+I+TK+DGTA+GG + I IPV ++GVGE I+DL+ F Sbjct: 236 GQNALSQARQFMEVADITGIILTKLDGTAKGGIAVAIQSELGIPVKYVGVGEKIDDLQKF 295 Query: 302 VAKDF 306 A++F Sbjct: 296 NAEEF 300 >gi|168491164|ref|ZP_02715307.1| cell division protein FtsY [Streptococcus pneumoniae CDC0288-04] gi|183574535|gb|EDT95063.1| cell division protein FtsY [Streptococcus pneumoniae CDC0288-04] Length = 425 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 109/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K N+D F Sbjct: 162 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKGGNYDERIHFQA 219 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 220 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 279 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 280 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 339 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 340 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 399 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 400 GFGEKIDDIGEFNSENF 416 >gi|33520063|ref|NP_878895.1| cell division protein FtsY [Candidatus Blochmannia floridanus] gi|33504409|emb|CAD83302.1| cell division protein FtsY [Candidatus Blochmannia floridanus] Length = 308 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 110/307 (35%), Positives = 183/307 (59%), Gaps = 10/307 (3%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + KL +T K+ + I DI +R +D +++ LI+SD+ + QKI+ Sbjct: 5 FTLFNKLKTSLLNTRKKIGDSIFDIFHNRIVDHDTINIIKNQLIKSDVNIQTTQKIINNF 64 Query: 71 LTKRYAKDVSVQRVLYDVSELIH----KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 + + +Y E+IH +++ P+ KP + + +P VILV+GVNGVGKTT Sbjct: 65 KKNTFLNMNLNSKSIY---EIIHHSMLQIMKPVEKPL-FITNQQPFVILVIGVNGVGKTT 120 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT-SADFVCSEIGSDAAALAYEA 185 +GKL+ VM+AAGDT R+AAIDQL + S + + SD+A++ + A Sbjct: 121 TVGKLAYHYRSQNKSVMIAAGDTKRAAAIDQLITFTKNIDSISIIANYSTSDSASIIFNA 180 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 ++A ++ +++LIIDTAGRL NN + + K+ + +K++ P+APH + VLD+ GQN+ Sbjct: 181 MQKALSQNINILIIDTAGRLQNNIHNIQELQKIQQTIKKIQPNAPHETILVLDSNIGQNS 240 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + Q++ FH+ TG+IMTK+DG+++GG L+ I IP+ +LG+G+ + DL+ F A + Sbjct: 241 INQLKTFHSTITITGIIMTKLDGSSKGGVLLSISNCFSIPIRYLGIGQNLEDLQIFNATE 300 Query: 306 F-SAVIT 311 F A++T Sbjct: 301 FIEAILT 307 >gi|304372887|ref|YP_003856096.1| Cell division protein ftsY [Mycoplasma hyorhinis HUB-1] gi|304309078|gb|ADM21558.1| Cell division protein ftsY [Mycoplasma hyorhinis HUB-1] Length = 380 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 111/309 (35%), Positives = 183/309 (59%), Gaps = 11/309 (3%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 I K G ++ L E + ++ S+ ++D+ E+LE++LI SDI I++EL Sbjct: 68 IDKYVAGLTKANISLSEQLIELQRSKLKVDEEYFEQLEEILIMSDISPFFVDVIIDELKK 127 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH------RPHVILVVGVNGVGKTT 126 + +++S ++ ++ELI + + + +H R ++IL++GVNG GKTT Sbjct: 128 EVKKQNISDSKL---INELIADKMYTIYANRSIINTHLNIKDGRLNIILMIGVNGSGKTT 184 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEA 185 I K++ ++ G K+++AAGDTFR+AA++QL+IWA+R AD + D ++ Y A Sbjct: 185 SISKIANQLKKEGKKILIAAGDTFRAAAVEQLEIWANRVGADILKPNPNEFDPGSVVYRA 244 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 ++A+++ DVLIIDTAGRL N LM + K+ +V++ P APH L VLDATTGQN Sbjct: 245 IEKAESENYDVLIIDTAGRLQNKVNLMNELKKVNKVIQNKYPDAPHESLLVLDATTGQNG 304 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + Q + F +G+++TKMDGT++GG + I + V +G+GE ++DL+ F + Sbjct: 305 ISQAKHFKEATPVSGIVLTKMDGTSKGGIIFSIKDELDMDVKLIGLGEKMDDLQEFNLDN 364 Query: 306 FSAVITGCL 314 F +T L Sbjct: 365 FIYALTKDL 373 >gi|313679649|ref|YP_004057388.1| signal recognition particle-docking protein ftsy [Oceanithermus profundus DSM 14977] gi|313152364|gb|ADR36215.1| signal recognition particle-docking protein FtsY [Oceanithermus profundus DSM 14977] Length = 305 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 125/302 (41%), Positives = 177/302 (58%), Gaps = 10/302 (3%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 +SW +L +G TS L T + + V EELE LI +D+G+ Q+I++E+ Sbjct: 1 MSWFDRLKQGLKKTSQTL----TKAVPWGGDPEEVLEELEFALIAADVGLEATQEILKEV 56 Query: 71 LT--KRYAKDVSVQRVLYDVSELIHKM-LMPLS-KPFNWDFSHRP--HVILVVGVNGVGK 124 KR ++ Q ++ + + L L KP + P HV+L+VGVNGVGK Sbjct: 57 RESGKRDLREAVKQALVLQLEPDARRAKLRKLGFKPDAKKSTVEPKGHVVLMVGVNGVGK 116 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT I KL + + G V+ AAGDTFR+A QL++W +RT + + GSD AALA++ Sbjct: 117 TTTIAKLGRYYKERGKSVLFAAGDTFRAAGGAQLELWGERTGIPVISAPEGSDPAALAFD 176 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A K A+ +D+L +DTAGRLH LM + K+ R + + DP P V VLDATTGQN Sbjct: 177 AAKARAARGMDLLFVDTAGRLHTKHNLMEELKKVKRSIAKADPGEPGEVWLVLDATTGQN 236 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 L Q + F G TG+I+TK+DGTA+GG L+PIV +P+ F+GVGE DL+PF A Sbjct: 237 GLEQAKKFDEAVGLTGVIVTKLDGTAKGGVLVPIVRELGVPIRFIGVGESAEDLQPFDAG 296 Query: 305 DF 306 ++ Sbjct: 297 EY 298 >gi|313665368|ref|YP_004047239.1| signal recognition particle-docking protein FtsY [Mycoplasma leachii PG50] gi|312949906|gb|ADR24502.1| signal recognition particle-docking protein FtsY [Mycoplasma leachii PG50] Length = 423 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 105/271 (38%), Positives = 171/271 (63%), Gaps = 9/271 (3%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 ++ DD EELED+LIR+D+G+ + K V L+ K+ +D S + + + E +++ Sbjct: 133 KQADDEFFEELEDVLIRTDMGMKMVLK-VSNLVRKKTKRDTSFENIKDALVESLYQAYTD 191 Query: 99 ---LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 +K ++ DF +R ++ ++VGVNG GKTT + K++ ++ G KV++AA DTFR+ A Sbjct: 192 NDWTNKKYHIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGA 251 Query: 155 IDQLKIWAD---RTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 QL+ W D V +++ +D A++ ++A K+A+ + D+L+IDTAGRL N Sbjct: 252 TQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKVN 311 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LMA + KM +++++++ APH VL V+DATTGQN + Q E F VA +G+I+TKMD T+ Sbjct: 312 LMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTS 371 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +GG + I IP+ +GVGE ++DL F Sbjct: 372 KGGIGLAIKELLNIPIKMIGVGEKVDDLLAF 402 >gi|167765551|ref|ZP_02437615.1| hypothetical protein CLOSS21_00045 [Clostridium sp. SS2/1] gi|167712736|gb|EDS23315.1| hypothetical protein CLOSS21_00045 [Clostridium sp. SS2/1] Length = 318 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 124/325 (38%), Positives = 189/325 (58%), Gaps = 14/325 (4%) Query: 1 MSNQKVA-SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDI 58 M+ +++A SE + ++L +G + T + I S +D+ EELE++LI SD+ Sbjct: 1 MNKRRMAMSEKKGFFKRLAQGLSKTRDNIASSFDSIFSGFSGIDEDFYEELEEILIMSDM 60 Query: 59 GVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114 G+ I+E+L K + +++L D + +M + S +DF + V+ Sbjct: 61 GIDTTMNIIEDLKKKVKENKIKEPEECRQLLID--SIKDQMRLEDSA---YDFIDKKSVV 115 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 LV+GVNGVGKTT +GKL+ + G KV+LAA DTFR+ AI+QLK W++R D + Sbjct: 116 LVIGVNGVGKTTSVGKLAASLKGQGKKVLLAAADTFRAGAIEQLKEWSNRAGVDIISQAE 175 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 G+D AA+ Y+A A+A+ VDVL+ DTAGRLHN LM + K+ R++++ A L Sbjct: 176 GADPAAVVYDAVAAAKARDVDVLLCDTAGRLHNKKNLMNELSKINRIIQKEYSEAYLETL 235 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VLD TTGQNA+ Q + F +G+I+TK+DGTA+GG I I IPV ++G+GE Sbjct: 236 IVLDGTTGQNAMAQAKQFKEATDISGIILTKLDGTAKGGIAIAIQSELGIPVKYIGIGEQ 295 Query: 295 INDLEPFVAKDFSAVITGCLDYGEE 319 ++DL+ F D + + GEE Sbjct: 296 VDDLQRF---DPDMFVNALFEKGEE 317 >gi|289450609|ref|YP_003474968.1| signal recognition particle-docking protein FtsY [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185156|gb|ADC91581.1| signal recognition particle-docking protein FtsY [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 304 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 122/299 (40%), Positives = 183/299 (61%), Gaps = 6/299 (2%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +++ + G A T L GI I ++ D+ + +ELE+LL+++D+GV A ++E+ Sbjct: 1 MAFFERFKAGLAKTRDFLNGGINKISAAMGHFDEDMLDELEELLVQADVGVPCATFLMEK 60 Query: 70 LLTK-RYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 + + KD S V+ + E I +L PL D R ++IL++GVNG GKTT Sbjct: 61 VRKDIKVNKDNSRAAVINSLREGIVAVLGDPLKLTLKPD---RLNIILLIGVNGTGKTTT 117 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 GKL+ + AG KV+LAA DTFR+AAIDQLK WA+ T + GSD AA+ Y++ + Sbjct: 118 CGKLALRYRQAGKKVLLAAADTFRAAAIDQLKYWAELTGTPCIAYPEGSDPAAVVYDSVQ 177 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+A+ DVL++DTAGRLHN LM + K+ R++KR P+A + ++DA TGQNA+ Sbjct: 178 AAKARAADVLLVDTAGRLHNKQNLMDELAKLYRIIKREAPNAALESILIVDANTGQNAVI 237 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q E F+A A TGLI+TK+DG ++GG + + K+P+Y +G+GE DL F +F Sbjct: 238 QAEKFNAAAQLTGLIITKLDGNSKGGVAVAVANAVKLPIYMVGLGERAEDLADFAVNEF 296 >gi|90961604|ref|YP_535520.1| cell division protein [Lactobacillus salivarius UCC118] gi|90820798|gb|ABD99437.1| Cell division protein [Lactobacillus salivarius UCC118] Length = 423 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 110/260 (42%), Positives = 154/260 (59%), Gaps = 8/260 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-----KPFNWDF 107 LI +D+G A KI +EL + ++ + + D +I K++ + N F Sbjct: 153 LIEADVGFETAMKISDELRQEVKLRNAKKKNEISDA--IIEKLVEIYENEGKEEDNNLHF 210 Query: 108 SHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 S P V L VGVNGVGKTT IGKL+ + G KVMLAA DTFR+ AI+QL W R Sbjct: 211 SSEGPTVFLFVGVNGVGKTTTIGKLAHRYKMEGKKVMLAAADTFRAGAIEQLAEWGRRVG 270 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 V SD AA+ ++A K+A+ + D+L++DTAGRL N LM + K+ RV+ R Sbjct: 271 VTVVKKVEKSDPAAVVFDAVKKAKEEDYDILLVDTAGRLQNKVNLMKELEKIARVITREI 330 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL LDATTGQNAL Q + F V TG+++TK+DGTA+GG ++ I +PV Sbjct: 331 PDAPHEVLLALDATTGQNALTQAKQFKDVTNVTGIVLTKLDGTAKGGIVLAIRNELHLPV 390 Query: 287 YFLGVGEGINDLEPFVAKDF 306 +G+GE ++DL F +++ Sbjct: 391 KLVGLGEKMDDLRDFSPEEY 410 >gi|303233305|ref|ZP_07319976.1| signal recognition particle-docking protein FtsY [Atopobium vaginae PB189-T1-4] gi|302480605|gb|EFL43694.1| signal recognition particle-docking protein FtsY [Atopobium vaginae PB189-T1-4] Length = 299 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 112/277 (40%), Positives = 165/277 (59%), Gaps = 13/277 (4%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEEL---LTKRYAKDVSVQRVLYDVSELIHKMLM 97 +DD E+LED L+ D+G VA +IV+EL + KD S R LI K+ Sbjct: 29 VDDDFWEDLEDRLVMGDVGADVAGQIVDELRLLAAQNNYKDASAIR-----GALIDKLAS 83 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 + F+ P +L VG+NG GKTT +GKL+ A + ++ A DTFR+AAI+Q Sbjct: 84 YVYVSDIDPFATYPACVLFVGINGAGKTTTVGKLAYAACAAKKRCIIGAADTFRAAAIEQ 143 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L++WA R V E GSD A++ ++ +QAQ DV++IDTAGRLH + LM + K Sbjct: 144 LEVWATRAQVPCVTRERGSDPASVCFDTLEQAQQTNADVVLIDTAGRLHTSKDLMQELLK 203 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 ++ + K+ + P V+ VLDA+ GQN L Q F+ G G+I+TK+DGT++GG I Sbjct: 204 VVTITKK-RANMPVYVVLVLDASCGQNGLVQAREFNEALGLDGMIVTKLDGTSKGG--IA 260 Query: 278 IVVTH--KIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 I +H ++P++ +GVGE + DL+PF A DF+A + G Sbjct: 261 IRASHELQLPIFRIGVGETLEDLQPFSAHDFAAALVG 297 >gi|257063723|ref|YP_003143395.1| signal recognition particle-docking protein FtsY [Slackia heliotrinireducens DSM 20476] gi|256791376|gb|ACV22046.1| signal recognition particle-docking protein FtsY [Slackia heliotrinireducens DSM 20476] Length = 304 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 114/308 (37%), Positives = 174/308 (56%), Gaps = 13/308 (4%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +SW ++ G + + K +E I + S +DD + LE+ LI SD+G A KIVEE Sbjct: 1 MSWFDRMKAGLSKSREKFQESINVLTFSGPDVDDDFWDNLEETLIMSDMGARAATKIVEE 60 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPHVILVVGVNGVGK 124 + KD + ++ L + ++ + ++ F P +L+VGVNG GK Sbjct: 61 M------KDTTQRKALANADAIMDVLCDRIADTFTVAKDGEGLDQDPLCLLLVGVNGSGK 114 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT GK++ + G V+L A DTFR+AAI+QL+ WA R+ V E GSD A++ YE Sbjct: 115 TTTAGKMAAEAKGNGKTVVLGAADTFRAAAIEQLEEWARRSDVTIVERERGSDPASVCYE 174 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 + A+ + D++++DTAGRLH ++ LM + K+ V+++ P + V+DATTGQN Sbjct: 175 TLEVAEREGADLVVVDTAGRLHTSADLMRELQKVTSVVRKR-AACPVMTVLVIDATTGQN 233 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 L Q F+ G+I+TK+DGTA+GG + I +P+ +GVGEGI DL F A Sbjct: 234 GLVQARTFNDALDLDGVIVTKLDGTAKGGIALAISYELGLPILKIGVGEGIEDLRDFDAH 293 Query: 305 DFSAVITG 312 DF+ +TG Sbjct: 294 DFARALTG 301 >gi|307708793|ref|ZP_07645255.1| cell division protein FtsY [Streptococcus mitis NCTC 12261] gi|307615159|gb|EFN94370.1| cell division protein FtsY [Streptococcus mitis NCTC 12261] Length = 429 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 108/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K N+D F Sbjct: 166 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDERIHFQD 223 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 224 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 283 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A ++ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 284 VTGAEKADPASVVFDGMERAVSEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 343 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 344 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 403 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 404 GFGEKIDDIGEFNSENF 420 >gi|312868303|ref|ZP_07728503.1| signal recognition particle-docking protein FtsY [Streptococcus parasanguinis F0405] gi|311096048|gb|EFQ54292.1| signal recognition particle-docking protein FtsY [Streptococcus parasanguinis F0405] Length = 553 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 110/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K ++ F Sbjct: 290 IMSDVGVQVASNLTEELRYEARLENAKKPDALKRV--IIEKLVDLYEKDGQFNEAIRFQD 347 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R Sbjct: 348 GLTVMLFVGVNGVGKTTSIGKLAHRYKQEGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 407 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V SD A++ ++ ++A A+ +DVL+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 408 VTGPEKSDPASVVFDGMERAIAENIDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPDA 467 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH L LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 468 PHETLLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIREELDIPVKLI 527 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ PF +++F Sbjct: 528 GFGEKIDDIGPFHSENF 544 >gi|296876113|ref|ZP_06900167.1| cell division protein FtsY [Streptococcus parasanguinis ATCC 15912] gi|296432824|gb|EFH18617.1| cell division protein FtsY [Streptococcus parasanguinis ATCC 15912] Length = 552 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 110/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K ++ F Sbjct: 289 IMSDVGVQVASNLTEELRYEARLENAKKPDALKRV--IIEKLVDLYEKDGQFNEAIRFQD 346 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R Sbjct: 347 GLTVMLFVGVNGVGKTTSIGKLAHRYKQEGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 406 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V SD A++ ++ ++A A+ +DVL+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 407 VTGPEKSDPASVVFDGMERAIAENIDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPDA 466 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH L LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 467 PHETLLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIREELDIPVKLI 526 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ PF +++F Sbjct: 527 GFGEKIDDIGPFHSENF 543 >gi|94989975|ref|YP_598075.1| cell division protein ftsY [Streptococcus pyogenes MGAS10270] gi|94543483|gb|ABF33531.1| Cell division protein ftsY [Streptococcus pyogenes MGAS10270] Length = 516 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 109/259 (42%), Positives = 157/259 (60%), Gaps = 6/259 (2%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----F 107 +LI SD+GV VA + EEL + ++ L V ++ K++ K +++ + Sbjct: 251 MLILSDVGVHVATTLTEELRYEAKLENAKKPDALKRV--IVEKLVDIYEKDGHYNEAINY 308 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 V+L VGVNGVGKTT IGK++ + G KVML A DTFR+ A+ QL W R Sbjct: 309 QDGLTVMLFVGVNGVGKTTSIGKMAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDV 368 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + +D A++ ++ ++A AK VD+L+IDTAGRL N LMA + KM R++KR+ P Sbjct: 369 PVITGPEKADPASVVFDGMEKAVAKGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVLP 428 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 APH L LDA+TGQNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV Sbjct: 429 DAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVK 488 Query: 288 FLGVGEGINDLEPFVAKDF 306 F+G GE ++D+ F ++DF Sbjct: 489 FIGFGEKVDDIGEFHSEDF 507 >gi|47458973|ref|YP_015835.1| cell division protein ftsY [Mycoplasma mobile 163K] gi|47458301|gb|AAT27624.1| cell division protein ftsY [Mycoplasma mobile 163K] Length = 426 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 113/281 (40%), Positives = 168/281 (59%), Gaps = 11/281 (3%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 ++DD EELE++LI SDI V + I+EE+ ++VS +++ ++ + K+ + Sbjct: 139 NKIDDDFFEELEEILIMSDISVNLVFTIIEEIKKVVKIENVSDPKLIGEI--IADKLFVI 196 Query: 99 LSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 + D + R +VIL+VGVNG GKTT I KL+ K+++AAGDTFR+ Sbjct: 197 YTNNSIVDTNLKIEKGRLNVILMVGVNGSGKTTTIAKLANMYKQKSYKILIAAGDTFRAG 256 Query: 154 AIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 A++QL IWA+R D V + G D +++ ++A ++A+ + D+LIIDTAGRL N LM Sbjct: 257 AVEQLGIWANRLEVDIVKPDKEGQDPSSVVFKAMQKAKDEIYDLLIIDTAGRLQNKVNLM 316 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + K+ + + R P APH L VLDAT GQNAL Q F V +G+++TKMDGT++G Sbjct: 317 NELAKINQTISRFLPEAPHESLLVLDATNGQNALSQASAFKEVTPLSGIVLTKMDGTSKG 376 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 G +I I I V LG+GE ++DL+ F D A I G Sbjct: 377 GIIISIKDLVNIDVKLLGLGEKMDDLQEF---DLDAFIYGL 414 >gi|168486564|ref|ZP_02711072.1| cell division protein FtsY [Streptococcus pneumoniae CDC1087-00] gi|183570449|gb|EDT90977.1| cell division protein FtsY [Streptococcus pneumoniae CDC1087-00] Length = 429 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 108/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K ++D F Sbjct: 166 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 223 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 224 NLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 283 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 284 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 343 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 344 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 403 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 404 GFGEKIDDIGEFNSENF 420 >gi|15901105|ref|NP_345709.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae TIGR4] gi|111658433|ref|ZP_01409112.1| hypothetical protein SpneT_02000404 [Streptococcus pneumoniae TIGR4] gi|149012294|ref|ZP_01833363.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae SP19-BS75] gi|182684029|ref|YP_001835776.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae CGSP14] gi|303254261|ref|ZP_07340370.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae BS455] gi|303258879|ref|ZP_07344858.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae SP-BS293] gi|303261562|ref|ZP_07347509.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae SP14-BS292] gi|303264233|ref|ZP_07350153.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae BS397] gi|303266136|ref|ZP_07352029.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae BS457] gi|303268137|ref|ZP_07353937.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae BS458] gi|14972726|gb|AAK75349.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae TIGR4] gi|147763620|gb|EDK70555.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae SP19-BS75] gi|182629363|gb|ACB90311.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae CGSP14] gi|301801901|emb|CBW34625.1| putative signal recognition particle 54 FtsY [Streptococcus pneumoniae INV200] gi|302598755|gb|EFL65792.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae BS455] gi|302637142|gb|EFL67630.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae SP14-BS292] gi|302639822|gb|EFL70278.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae SP-BS293] gi|302642354|gb|EFL72701.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae BS458] gi|302644306|gb|EFL74560.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae BS457] gi|302646045|gb|EFL76272.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae BS397] Length = 429 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 108/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ VL V +I K++ K ++D F Sbjct: 166 IMSDVGVQVASNLTEELRYEAKLENAKKPDVLRRV--IIEKLVELYEKDGSYDESIHFQD 223 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 224 NLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 283 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A + +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 284 VTGPEKADPASVVFDGMERAVTEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 343 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 344 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 403 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 404 GFGEKIDDIGEFNSENF 420 >gi|301299283|ref|ZP_07205569.1| signal recognition particle-docking protein FtsY [Lactobacillus salivarius ACS-116-V-Col5a] gi|300853127|gb|EFK80725.1| signal recognition particle-docking protein FtsY [Lactobacillus salivarius ACS-116-V-Col5a] Length = 423 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 110/260 (42%), Positives = 154/260 (59%), Gaps = 8/260 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-----KPFNWDF 107 LI +D+G A KI +EL + ++ + + D +I K++ + N F Sbjct: 153 LIEADVGFETAMKISDELRQEVKLRNAKKKNEISDA--IIEKLVEIYENEGKEEDNNLHF 210 Query: 108 SHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 S P V L VGVNGVGKTT IGKL+ + G KVMLAA DTFR+ AI+QL W R Sbjct: 211 SSEGPTVFLFVGVNGVGKTTTIGKLAHRYKMEGKKVMLAAADTFRAGAIEQLAEWGRRVG 270 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 V SD AA+ ++A K+A+ + D+L++DTAGRL N LM + K+ RV+ R Sbjct: 271 VTVVKKVEKSDPAAVVFDAVKKAKEEDYDILLVDTAGRLQNKVNLMKELEKIARVITREI 330 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL LDATTGQNAL Q + F V TG+++TK+DGTA+GG ++ I +PV Sbjct: 331 PDAPHEVLLALDATTGQNALTQAKQFKDVTNVTGIVLTKLDGTAKGGIVLAIRNELHLPV 390 Query: 287 YFLGVGEGINDLEPFVAKDF 306 +G+GE ++DL F +++ Sbjct: 391 KLVGLGEKMDDLRDFSPEEY 410 >gi|148989266|ref|ZP_01820646.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae SP6-BS73] gi|147925244|gb|EDK76323.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae SP6-BS73] Length = 425 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 108/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K ++D F Sbjct: 162 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 219 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 220 NLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 279 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 280 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 339 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 340 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 399 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 400 GFGEKIDDIGEFNSENF 416 >gi|197117354|ref|YP_002137781.1| signal recognition particle GTPase FtsY [Geobacter bemidjiensis Bem] gi|197086714|gb|ACH37985.1| signal recognition particle GTPase FtsY [Geobacter bemidjiensis Bem] Length = 409 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 121/297 (40%), Positives = 180/297 (60%), Gaps = 3/297 (1%) Query: 12 SWIRKLTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 S+ +L K + T + + T ++ +++D EELE++LI +D+GV ++ L Sbjct: 108 SFFERLKKSLSKTHESIVGRVDTLLLGKKQIDTDTLEELEEILITADLGVKTTVDLIRTL 167 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + ++ L + E I LM + P +P VILV+GVNGVGKTT IG Sbjct: 168 EQRLKRDELQDGEALKKALKEEIQLRLMAHAAPLVVT-DKKPFVILVIGVNGVGKTTTIG 226 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + + G KV+LAA DTFR+AA +QL++W+ R AD V + G+D +A+ ++A K A Sbjct: 227 KLAARYAGEGKKVLLAAADTFRAAAAEQLELWSQRVGADIVRHKEGADPSAVVFDACKAA 286 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A+ DVLIIDTAGR+H LM + K+ RVL R P APH L VLDA TGQNAL Q Sbjct: 287 VARGTDVLIIDTAGRMHTKVNLMEEMKKIRRVLTREIPDAPHETLLVLDAATGQNALSQA 346 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++F A +G+++TK+DG+A+GG ++ + + +PV F+GVGE ++DL F F Sbjct: 347 KLFKEAAFVSGVVLTKLDGSAKGGVVVAVSNEYALPVRFIGVGESVDDLREFDPAQF 403 >gi|149200421|ref|ZP_01877437.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein [Lentisphaera araneosa HTCC2155] gi|149136490|gb|EDM24927.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein [Lentisphaera araneosa HTCC2155] Length = 311 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 114/285 (40%), Positives = 169/285 (59%), Gaps = 3/285 (1%) Query: 19 KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77 KG T L + S+ + D+ +LE LI +D+GV+V QKI+ ++ Sbjct: 10 KGLKKTKTALFRSFESVFSNVEKWDEDTYRQLEAALISADLGVSVTQKIIADIKESYNLG 69 Query: 78 DVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136 ++ + +++ I +L ++P N + ++ P V+L+VGVNG GKTT GKL+ K+ Sbjct: 70 EIKTSEDIINIATTRITSILEDDNRPLNIN-TNGPTVLLMVGVNGAGKTTTTGKLAYKLK 128 Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196 G V+LAA DTFR+AAI+QLK W R + + GSDAAA+AY+A A+AK VD Sbjct: 129 QDGKSVLLAACDTFRAAAIEQLKHWGKRIDVPVIAGQHGSDAAAIAYDACASAKAKNVDY 188 Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256 LIIDTAGR H LM + K++RV+++ P APH + V+D +TG NAL Q F Sbjct: 189 LIIDTAGRQHTRQDLMEELPKILRVIRKNFPEAPHETVLVVDGSTGTNALFQAREFGKAC 248 Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 T L +TK+DG+ +GG ++ I H P++F+G+GE DL+PF Sbjct: 249 EVTSLAVTKLDGSGKGGVVVAIKDEHTFPIHFVGLGESPEDLQPF 293 >gi|313896550|ref|ZP_07830099.1| signal recognition particle-docking protein FtsY [Selenomonas sp. oral taxon 137 str. F0430] gi|312974735|gb|EFR40201.1| signal recognition particle-docking protein FtsY [Selenomonas sp. oral taxon 137 str. F0430] Length = 312 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 116/261 (44%), Positives = 167/261 (63%), Gaps = 6/261 (2%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SH 109 L+ +D+GV + ++ + K++ R D+ + K ++ + + + F + Sbjct: 44 LLMADVGVKTTETLIAAVRKGIKQKEI---RSPEDLIPFMEKEIVRILEEGDDTFRMAAQ 100 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+LVVG NGVGKTT IGKLS S G V+LAA DTFR+AAIDQL+IW +RT+A Sbjct: 101 EPTVLLVVGTNGVGKTTTIGKLSAYYSRQGKTVLLAAADTFRAAAIDQLEIWGNRTNAQV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V GSD AA+ ++A + A+A+ VD++I+DTAGRL S LM + K+ RV+ R P A Sbjct: 161 VKHAEGSDPAAVVFDAMQAAKARGVDIVIVDTAGRLQTKSNLMQELEKIYRVIGREIPGA 220 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH L VLDA TGQNA+ Q E+F A +G+++TK+DGTA+GG I I IP+ ++ Sbjct: 221 PHETLLVLDAGTGQNAISQAELFTKAAPVSGVVLTKLDGTAKGGVTIGIKSQLSIPIKWI 280 Query: 290 GVGEGINDLEPFVAKDFSAVI 310 GVGEG++DL PF A+DF + + Sbjct: 281 GVGEGVDDLRPFRAEDFVSAL 301 >gi|227890691|ref|ZP_04008496.1| signal recognition particle-docking protein FtsY [Lactobacillus salivarius ATCC 11741] gi|227867629|gb|EEJ75050.1| signal recognition particle-docking protein FtsY [Lactobacillus salivarius ATCC 11741] Length = 423 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 110/260 (42%), Positives = 154/260 (59%), Gaps = 8/260 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-----KPFNWDF 107 LI +D+G A KI +EL + ++ + + D +I K++ + N F Sbjct: 153 LIEADVGFETAMKISDELRQEVKLRNAKKKNEISDA--IIEKLVEIYENEGKEEDNNLHF 210 Query: 108 SHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 S P V L VGVNGVGKTT IGKL+ + G KVMLAA DTFR+ AI+QL W R Sbjct: 211 SSEGPTVFLFVGVNGVGKTTTIGKLAHRYKMEGKKVMLAAADTFRAGAIEQLAEWGRRVG 270 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 V SD AA+ ++A K+A+ + D+L++DTAGRL N LM + K+ RV+ R Sbjct: 271 VTVVKKVEKSDPAAVVFDAVKKAKEEDYDILLVDTAGRLQNKVNLMKELEKIARVITREI 330 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL LDATTGQNAL Q + F V TG+++TK+DGTA+GG ++ I +PV Sbjct: 331 PDAPHEVLLALDATTGQNALTQAKQFKDVTNVTGIVLTKLDGTAKGGIVLAIRNELHLPV 390 Query: 287 YFLGVGEGINDLEPFVAKDF 306 +G+GE ++DL F +++ Sbjct: 391 KLVGLGEKMDDLRDFSPEEY 410 >gi|315221415|ref|ZP_07863336.1| signal recognition particle-docking protein FtsY [Streptococcus anginosus F0211] gi|315189534|gb|EFU23228.1| signal recognition particle-docking protein FtsY [Streptococcus anginosus F0211] Length = 490 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 112/257 (43%), Positives = 155/257 (60%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNWDFSHRP 111 I SD+GV VA + E L + ++ VL V +I K++ K FN + + Sbjct: 227 ITSDVGVQVASNLTEALHQEALLENAKKPDVLRRV--IIEKLVDIYEKDGQFNEKINLQD 284 Query: 112 --HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ K AG VML A DTFR+ A+ QL W R Sbjct: 285 GLTVMLFVGVNGVGKTTSIGKLAYKYKQAGKTVMLVAADTFRAGAVAQLVEWGRRVDVPV 344 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V SD A++ Y+ ++A+A+ VD+L+IDTAGRL N LMA + K+ R++KR+DP A Sbjct: 345 VTGPEKSDPASVVYDGMERAKAENVDILMIDTAGRLQNKDNLMAELEKIGRIIKRVDPAA 404 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 405 PHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKLI 464 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 465 GFGEKIDDIGVFNSENF 481 >gi|163931159|pdb|3B9Q|A Chain A, The Crystal Structure Of Cpftsy From Arabidopsis Thaliana Length = 302 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 111/271 (40%), Positives = 164/271 (60%), Gaps = 3/271 (1%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSK 101 D V +ELE+ L+ SD G + +IVE L + + + D + E + +ML + Sbjct: 30 DRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNS 89 Query: 102 PFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 R P VI++VGVNG GKTT +GKL+ ++ + G KV++AAGDTFR+AA DQL+I Sbjct: 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEI 149 Query: 161 WADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 WA+RT + V +E + AA + +A K+ + + DV++ DT+GRLH N LM + Sbjct: 150 WAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACK 209 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 + + ++ AP+ +L VLD TG N L Q F+ V G TGLI+TK+DG+ARGG ++ +V Sbjct: 210 KAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVV 269 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 IPV F+GVGE + DL+PF + F I Sbjct: 270 EELGIPVKFIGVGEAVEDLQPFDPEAFVNAI 300 >gi|118581717|ref|YP_902967.1| signal recognition particle-docking protein FtsY [Pelobacter propionicus DSM 2379] gi|118504427|gb|ABL00910.1| signal recognition particle-docking protein FtsY [Pelobacter propionicus DSM 2379] Length = 381 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 118/302 (39%), Positives = 185/302 (61%), Gaps = 13/302 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITD-----IISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 + +L +G T KEG+ ++ + +D EELE++LI SD+GV +++ Sbjct: 80 FFERLKQGLQKT----KEGLVGRIDALVLGKKEIDADTLEELEEILITSDVGVKTTVELI 135 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF-NWDF-SHRPHVILVVGVNGVGKT 125 L + ++ + L + L ++L+ L+ D S RP V+LV+GVNGVGKT Sbjct: 136 RTLEQRLGRNELKDGQALKNA--LKEEILLRLNAHHGQLDIGSRRPFVLLVIGVNGVGKT 193 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+ + + +G V+LAA DTFR+AA +QL +W +R+ + + + G+D +A+ ++A Sbjct: 194 TTIGKLASRFTGSGKTVLLAAADTFRAAAAEQLVVWGERSGVEVIRHKEGADPSAVVFDA 253 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 K A A+ VD+LI+DTAGR+H LM + K+ RV+ R P APH L V+DA TGQNA Sbjct: 254 CKAAVARDVDILIVDTAGRMHTKVNLMEEMKKIRRVIDREIPGAPHETLLVVDAATGQNA 313 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + Q +F AG TG+ +TK+DGTA+GG ++ + +PV ++GVGE I+DL F ++ Sbjct: 314 VSQARLFKEAAGVTGIALTKLDGTAKGGVVVAVSHEFALPVRYIGVGEAIDDLRDFSPQE 373 Query: 306 FS 307 F+ Sbjct: 374 FT 375 >gi|15903166|ref|NP_358716.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae R6] gi|116516398|ref|YP_816572.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae D39] gi|149002612|ref|ZP_01827544.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae SP14-BS69] gi|194398069|ref|YP_002037844.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae G54] gi|237649944|ref|ZP_04524196.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae CCRI 1974] gi|237822507|ref|ZP_04598352.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae CCRI 1974M2] gi|15458750|gb|AAK99926.1| Cell division protein FtsY [Streptococcus pneumoniae R6] gi|116076974|gb|ABJ54694.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae D39] gi|147759223|gb|EDK66216.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae SP14-BS69] gi|194357736|gb|ACF56184.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae G54] Length = 425 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 108/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K ++D F Sbjct: 162 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 219 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 220 NLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 279 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 280 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 339 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 340 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 399 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 400 GFGEKIDDIGEFNSENF 416 >gi|323126814|gb|ADX24111.1| cell division protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 516 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 118/275 (42%), Positives = 168/275 (61%), Gaps = 12/275 (4%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA-------KDVSVQRVLYDVSEL 91 RR+D+ EELE++LI SD+GV VA + EEL RY K +++RV+ + Sbjct: 238 RRVDEEFFEELEEMLILSDVGVHVATTLTEEL---RYEAKLENAKKPDALKRVIVEKLVD 294 Query: 92 IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 I++ ++ N+ V+L VGVNGVGKTT IGKL+ + G KVML A DTFR Sbjct: 295 IYEKDGQYNEAINY--QDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFR 352 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 + A+ QL W R + +D A++ ++ ++A A+ D+L+IDTAGRL N L Sbjct: 353 AGAVAQLVEWGRRVDVPVITGPEKADPASVVFDGVEKAVAEGADILLIDTAGRLQNKENL 412 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 MA + KM R++KR+ P APH L LDA+TGQNAL Q + F + TGLI+TK+DGTA+ Sbjct: 413 MAELEKMGRIIKRVIPDAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAK 472 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 GG ++ I IPV F+G GE ++D+ F ++DF Sbjct: 473 GGVVLAIRQELDIPVKFIGFGEKMDDIGEFHSEDF 507 >gi|269122872|ref|YP_003305449.1| signal recognition particle-docking protein FtsY [Streptobacillus moniliformis DSM 12112] gi|268314198|gb|ACZ00572.1| signal recognition particle-docking protein FtsY [Streptobacillus moniliformis DSM 12112] Length = 297 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 121/293 (41%), Positives = 183/293 (62%), Gaps = 12/293 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 K KGF + KLKE + D V EELE+LLI++D+G+ + +IVE L Sbjct: 9 KPKKGFFT---KLKE----FFVGEAITDEVYEELEELLIQADLGMKMTLEIVENLEKNVR 61 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKK 134 +K + + ++YD +L+ + K + + R ++ILV+GVNGVGKTT IGK++ K Sbjct: 62 SKGIKSKELMYDELKLLLSEKLEKFKDNSLNIQKGRLNIILVIGVNGVGKTTSIGKIAMK 121 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 + G V++ A DTFR+AAI+Q+++W R + + + GSD AA+ ++ A++K + Sbjct: 122 LKKEGKSVIIGAADTFRAAAIEQVEMWGQRAGIEVIKQKHGSDPAAVVFDTINTAKSKNI 181 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKR-LDPHAPHSVLQVLDATTGQNALRQVEMFH 253 DV IIDTAGRLHN LM + K+ +++K+ +D + L V+D+TTGQN L Q MF+ Sbjct: 182 DVAIIDTAGRLHNKVDLMKELEKIDKIIKQNVDEYES---LIVVDSTTGQNGLEQARMFN 238 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++ TG+I+TK DGTA+GG + IV PV FLGVGEG++DL+ F K+F Sbjct: 239 NISNITGVILTKFDGTAKGGIIFSIVSELNKPVKFLGVGEGVDDLKVFDCKEF 291 >gi|330723529|gb|AEC45899.1| signal recognition particle-docking protein FtsY [Mycoplasma hyorhinis MCLD] Length = 380 Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 111/309 (35%), Positives = 182/309 (58%), Gaps = 11/309 (3%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 I K G ++ L E + ++ S+ + D+ E+LE++LI SDI I++EL Sbjct: 68 IDKYVAGLTKANISLSEQLIELQRSKLKADEEYFEQLEEILIMSDISPFFVDVIIDELKK 127 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH------RPHVILVVGVNGVGKTT 126 + +++S ++ ++ELI + + + +H R ++IL++GVNG GKTT Sbjct: 128 EVKKQNISDSKL---INELIADKMYTIYANRSIINTHLNIKDGRLNIILMIGVNGSGKTT 184 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEA 185 I K++ ++ G K+++AAGDTFR+AA++QL+IWA+R AD + D ++ Y A Sbjct: 185 SISKIANQLKKEGKKILIAAGDTFRAAAVEQLEIWANRVGADILKPNPNEFDPGSVVYRA 244 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 ++A+++ DVLIIDTAGRL N LM + K+ +V++ P APH L VLDATTGQN Sbjct: 245 IEKAESENYDVLIIDTAGRLQNKVNLMNELKKVNKVIQNKYPDAPHESLLVLDATTGQNG 304 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + Q + F +G+++TKMDGT++GG + I + V +G+GE ++DL+ F + Sbjct: 305 ISQAKHFKEATPVSGIVLTKMDGTSKGGIIFSIKDELDMDVKLIGLGEKMDDLQEFNLDN 364 Query: 306 FSAVITGCL 314 F +T L Sbjct: 365 FIYALTKDL 373 >gi|225859038|ref|YP_002740548.1| cell division protein FtsY [Streptococcus pneumoniae 70585] gi|225720698|gb|ACO16552.1| cell division protein FtsY [Streptococcus pneumoniae 70585] Length = 425 Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 108/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K ++D F Sbjct: 162 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 219 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 220 NLTVMLFVGVNGVGKTTSIGKLAHRYKRAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 279 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 280 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 339 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 340 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 399 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 400 GFGEKIDDIGEFNSENF 416 >gi|162329941|pdb|2OG2|A Chain A, Crystal Structure Of Chloroplast Ftsy From Arabidopsis Thaliana Length = 359 Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 111/271 (40%), Positives = 164/271 (60%), Gaps = 3/271 (1%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSK 101 D V +ELE+ L+ SD G + +IVE L + + + D + E + +ML + Sbjct: 87 DRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNS 146 Query: 102 PFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 R P VI++VGVNG GKTT +GKL+ ++ + G KV++AAGDTFR+AA DQL+I Sbjct: 147 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEI 206 Query: 161 WADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 WA+RT + V +E + AA + +A K+ + + DV++ DT+GRLH N LM + Sbjct: 207 WAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACK 266 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 + + ++ AP+ +L VLD TG N L Q F+ V G TGLI+TK+DG+ARGG ++ +V Sbjct: 267 KAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVV 326 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 IPV F+GVGE + DL+PF + F I Sbjct: 327 EELGIPVKFIGVGEAVEDLQPFDPEAFVNAI 357 >gi|18406885|ref|NP_566056.1| CPFTSY; 7S RNA binding / GTP binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] gi|13430426|gb|AAK25835.1|AF360125_1 putative signal recognition particle receptor alpha subunit [Arabidopsis thaliana] gi|4583548|emb|CAB40382.1| chloroplast FtsY homolog [Arabidopsis thaliana] gi|15293185|gb|AAK93703.1| putative signal recognition particle receptor alpha subunit [Arabidopsis thaliana] gi|20197210|gb|AAC28547.2| putative signal recognition particle receptor (alpha subunit) [Arabidopsis thaliana] gi|330255505|gb|AEC10599.1| fused signal recognition particle receptor [Arabidopsis thaliana] Length = 366 Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 111/271 (40%), Positives = 164/271 (60%), Gaps = 3/271 (1%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSK 101 D V +ELE+ L+ SD G + +IVE L + + + D + E + +ML + Sbjct: 94 DRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNS 153 Query: 102 PFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 R P VI++VGVNG GKTT +GKL+ ++ + G KV++AAGDTFR+AA DQL+I Sbjct: 154 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEI 213 Query: 161 WADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 WA+RT + V +E + AA + +A K+ + + DV++ DT+GRLH N LM + Sbjct: 214 WAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACK 273 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 + + ++ AP+ +L VLD TG N L Q F+ V G TGLI+TK+DG+ARGG ++ +V Sbjct: 274 KAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVV 333 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 IPV F+GVGE + DL+PF + F I Sbjct: 334 EELGIPVKFIGVGEAVEDLQPFDPEAFVNAI 364 >gi|171060174|ref|YP_001792523.1| signal recognition particle-docking protein FtsY [Leptothrix cholodnii SP-6] gi|170777619|gb|ACB35758.1| signal recognition particle-docking protein FtsY [Leptothrix cholodnii SP-6] Length = 346 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 125/310 (40%), Positives = 182/310 (58%), Gaps = 20/310 (6%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W+ +L +G T I + + ++DD + E+LE L+ +D GV Q ++ +L Sbjct: 43 WLNRLKQGLRRTG----SSIAQVFTGTQIDDALYEDLEAALLVADAGVGATQFLLNDL-- 96 Query: 73 KRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 KR K+ V +++ + +L PL D + +P VI+V GVNG GKTT IG Sbjct: 97 KRRVKETRTTDPGAVKALLADALTDLLTPLQGTLKVD-AQQPTVIMVAGVNGAGKTTTIG 155 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL++ +++A KV+LAA DTFR+AA +QL +WADR + V E G D AA+ ++A Sbjct: 156 KLTRNLAEANCKVLLAAADTFRAAAREQLAVWADRNQVEIVSQE-GGDPAAVCFDAISAG 214 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ DV+I DTAGRL LM + K+ R + R P APH VL V+D TGQNAL QV Sbjct: 215 RARGCDVVIADTAGRLATQLHLMEELRKIHRSIGRAMPGAPHEVLLVVDGNTGQNALAQV 274 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK---------IPVYFLGVGEGINDLEP 300 + F G TGL++TK+DGTA+GG L I + + +PVYF+GVGE + DL+ Sbjct: 275 KAFDTALGLTGLVVTKLDGTAKGGVLAAIALWGRERQARGLGAVPVYFIGVGESLADLQT 334 Query: 301 FVAKDFSAVI 310 F A++FS + Sbjct: 335 FDAREFSQAL 344 >gi|5714433|gb|AAD47910.1|AF120112_1 chloroplast SRP receptor homolog, alpha subunit CPFTSY [Arabidopsis thaliana] Length = 366 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 111/271 (40%), Positives = 164/271 (60%), Gaps = 3/271 (1%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSK 101 D V +ELE+ L+ SD G + +IVE L + + + D + E + +ML + Sbjct: 94 DRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNS 153 Query: 102 PFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 R P VI++VGVNG GKTT +GKL+ ++ + G KV++AAGDTFR+AA DQL+I Sbjct: 154 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEI 213 Query: 161 WADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 WA+RT + V +E + AA + +A K+ + + DV++ DT+GRLH N LM + Sbjct: 214 WAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACK 273 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 + + ++ AP+ +L VLD TG N L Q F+ V G TGLI+TK+DG+ARGG ++ +V Sbjct: 274 KAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVV 333 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 IPV F+GVGE + DL+PF + F I Sbjct: 334 EELGIPVKFIGVGEAVEDLQPFDPEAFVNAI 364 >gi|149019235|ref|ZP_01834597.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae SP23-BS72] gi|225854709|ref|YP_002736221.1| cell division protein FtsY [Streptococcus pneumoniae JJA] gi|147931105|gb|EDK82084.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae SP23-BS72] gi|225722901|gb|ACO18754.1| cell division protein FtsY [Streptococcus pneumoniae JJA] Length = 425 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 108/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K ++D F Sbjct: 162 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 219 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 220 NLTVMLFVGVNGVGKTTSIGKLAHRYKRAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 279 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 280 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 339 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 340 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 399 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 400 GFGEKIDDIGEFNSENF 416 >gi|220931571|ref|YP_002508479.1| signal recognition particle-docking protein FtsY [Halothermothrix orenii H 168] gi|219992881|gb|ACL69484.1| signal recognition particle-docking protein FtsY [Halothermothrix orenii H 168] Length = 322 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 124/300 (41%), Positives = 182/300 (60%), Gaps = 4/300 (1%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIV 67 E +L G T + +T + +SR ++DD + E+LE++LI+SD+GV K+V Sbjct: 18 EKEGLFSRLKGGLDKTRSGFIQKVTGLFTSRGKIDDELFEDLEEILIQSDVGVKTTMKLV 77 Query: 68 EELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 EEL K ++ L D+ +E + ++L S + ++++VVGVNG GKTT Sbjct: 78 EELEEITEEKKITEPEQLIDIFNEELRQILE--SDDNGLELEDGLNILMVVGVNGAGKTT 135 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 I K++++ + G KVMLAAGDTFR+AAIDQLK W DR + G+DAAA+A++A Sbjct: 136 TIAKIAQRFKNEGKKVMLAAGDTFRAAAIDQLKTWGDRIGVKTIAQAEGADAAAVAFDAI 195 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+A+ VD+LI+DTAGRLH LM + K+ RV++R A VL VLDATTGQNA+ Sbjct: 196 QSARARGVDLLIVDTAGRLHTQKNLMEELKKVRRVIEREGKGANIEVLLVLDATTGQNAI 255 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q +F+ G+ +TK+DGTA+GG +I + IP+ +GVGE DL+ F F Sbjct: 256 NQARLFNEAVQVDGIALTKLDGTAKGGIVIAVKNELGIPIKLIGVGERAEDLQDFKPDRF 315 >gi|301794326|emb|CBW36751.1| putative signal recognition particle 54 FtsY [Streptococcus pneumoniae INV104] Length = 425 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 108/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K ++D F Sbjct: 162 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 219 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 220 NLTVMLFVGVNGVGKTTSIGKLAHRYKRAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 279 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 280 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 339 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 340 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 399 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 400 GFGEKIDDIGEFNSENF 416 >gi|169833825|ref|YP_001694674.1| cell division protein FtsY [Streptococcus pneumoniae Hungary19A-6] gi|168996327|gb|ACA36939.1| cell division protein FtsY [Streptococcus pneumoniae Hungary19A-6] Length = 425 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 108/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K ++D F Sbjct: 162 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 219 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 220 NLTVMLFVGVNGVGKTTSIGKLAHRYKRAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 279 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 280 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 339 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 340 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 399 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 400 GFGEKIDDIGEFNSENF 416 >gi|332201707|gb|EGJ15777.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae GA47368] Length = 429 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 108/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K ++D F Sbjct: 166 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 223 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 224 NLTVMLFVGVNGVGKTTSIGKLAHRYKRAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 283 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 284 VTGSEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 343 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 344 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 403 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 404 GFGEKIDDIGEFNSENF 420 >gi|315187115|gb|EFU20872.1| signal recognition particle-docking protein FtsY [Spirochaeta thermophila DSM 6578] Length = 289 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 109/270 (40%), Positives = 161/270 (59%), Gaps = 6/270 (2%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99 R D+ EE EDLLI +D+G A ++VEE+ +R K+ V + V E+I +L Sbjct: 16 RFDEAFWEEFEDLLIEADLGAETAFEVVEEV-QRRVKKEGVVD--VEGVREVIKDVLRRY 72 Query: 100 SKPFNWDFSHRPHVILV-VGVNGVGKTTVIGKLSKKMSDAGLK--VMLAAGDTFRSAAID 156 + + V+L+ VGVNGVGKTT I K + + + V+LAAGDTFR+ AID Sbjct: 73 VRAGGFSLPDSGTVVLLFVGVNGVGKTTTIAKCAHFIRSTWGRDDVVLAAGDTFRAGAID 132 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL++W +R V + G+D AA+ ++A + + + V++ DTAGR HN + LM + Sbjct: 133 QLRVWGERLGVRVVAQQPGADPAAVIFDAIQSVERRGGGVVLADTAGRFHNRASLMDELA 192 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 K+ RV++ HA + L V+DA+TGQNA RQ E+F G GL++ K DG A+GG L+ Sbjct: 193 KVDRVIRTKAVHADYRRLLVIDASTGQNAFRQAEVFQETVGLDGLVLAKYDGAAKGGVLV 252 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 PI +IP F+G GEG+ DL PF +++ Sbjct: 253 PISRRLEIPALFVGTGEGLEDLRPFDVEEY 282 >gi|322418395|ref|YP_004197618.1| signal recognition particle-docking protein FtsY [Geobacter sp. M18] gi|320124782|gb|ADW12342.1| signal recognition particle-docking protein FtsY [Geobacter sp. M18] Length = 403 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 123/281 (43%), Positives = 173/281 (61%), Gaps = 14/281 (4%) Query: 33 TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-----VSVQRVLYD 87 T ++ +++D EELE++LI +D+GV ++ L +R +D +++R L Sbjct: 124 TLLLGKKQIDTDTLEELEEILITADLGVKTTVDLIR-TLEQRLKRDELQDGAALKRAL-- 180 Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 E I LM P +P VILV+GVNGVGKTT IGKL+ + + G KV+LAA Sbjct: 181 -KEEIQLRLMEHHAPLVVT-DKKPFVILVIGVNGVGKTTTIGKLAARYAGEGKKVLLAAA 238 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DTFR+AA +QL++WA R D V + G+D +A+ ++A K A A+ DVLIIDTAGR+H Sbjct: 239 DTFRAAAAEQLELWAKRVGTDIVRHKEGADPSAVVFDACKAAIARGTDVLIIDTAGRMHT 298 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 LM + K+ RVL R P PH L VLDA TGQNAL Q ++F A TG+++TK+D Sbjct: 299 KVNLMEEMKKIRRVLTREIPDGPHETLLVLDAATGQNALSQAKLFKEAASVTGVVLTKLD 358 Query: 268 GTARGGGLIPIVVTHK--IPVYFLGVGEGINDLEPFVAKDF 306 G+A+GG I + V+H+ +PV F+GVGE + DL F F Sbjct: 359 GSAKGG--IVVAVSHEFALPVRFIGVGESVEDLRAFDPAQF 397 >gi|322387569|ref|ZP_08061178.1| cell division protein FtsY [Streptococcus infantis ATCC 700779] gi|321141436|gb|EFX36932.1| cell division protein FtsY [Streptococcus infantis ATCC 700779] Length = 452 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 108/257 (42%), Positives = 153/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP----FNWDFSH 109 I SD+GV VA + EEL + ++ L V +I K++ K N +F Sbjct: 189 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGIYNENINFQD 246 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 247 GLTVMLFVGVNGVGKTTSIGKLANRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 306 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 307 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKENLMAELEKIGRIIKRVVPEA 366 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 367 PHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIREELNIPVKLI 426 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 427 GFGEKIDDIGEFNSENF 443 >gi|317498506|ref|ZP_07956800.1| signal recognition particle-docking protein FtsY [Lachnospiraceae bacterium 5_1_63FAA] gi|316894199|gb|EFV16387.1| signal recognition particle-docking protein FtsY [Lachnospiraceae bacterium 5_1_63FAA] Length = 313 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 122/317 (38%), Positives = 183/317 (57%), Gaps = 13/317 (4%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66 SE + ++L +G + T + I S +D+ EELE++LI SD+G+ I Sbjct: 4 SEKKGFFKRLAQGLSKTRDNIASSFDSIFSGFSGIDEDFYEELEEILIMSDMGIDTTMNI 63 Query: 67 VEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 +E+L K + +++L D + +M + S +DF + V+LV+GVNGV Sbjct: 64 IEDLKKKVKENKIKEPEECRQLLID--SIKDQMRLEDSA---YDFIDKKSVVLVIGVNGV 118 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT +GKL+ + G KV+LAA DTFR+ AI+QLK W++R D + G+D AA+ Sbjct: 119 GKTTSVGKLAASLKGQGKKVLLAAADTFRAGAIEQLKEWSNRAGVDIISQAEGADPAAVV 178 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A A+A+ VDVL+ DTAGRLHN LM + K+ R++++ A L VLD TTG Sbjct: 179 YDAVAAAKARDVDVLLCDTAGRLHNKKNLMNELSKINRIIQKEYSEAYLETLIVLDGTTG 238 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q + F +G+I+TK+DGTA+GG I I IPV ++G+GE ++DL+ F Sbjct: 239 QNAMAQAKQFKEATDISGIILTKLDGTAKGGIAIAIQSELGIPVKYIGIGEQVDDLQRF- 297 Query: 303 AKDFSAVITGCLDYGEE 319 D + + GEE Sbjct: 298 --DPDMFVNALFEKGEE 312 >gi|291559017|emb|CBL37817.1| signal recognition particle-docking protein FtsY [butyrate-producing bacterium SSC/2] Length = 311 Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 122/317 (38%), Positives = 183/317 (57%), Gaps = 13/317 (4%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66 SE + ++L +G + T + I S +D+ EELE++LI SD+G+ I Sbjct: 2 SEKKGFFKRLAQGLSKTRDNIASSFDSIFSGFSGIDEDFYEELEEILIMSDMGIDTTMNI 61 Query: 67 VEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 +E+L K + +++L D + +M + S +DF + V+LV+GVNGV Sbjct: 62 IEDLKKKVKENKIKEPEECRQLLID--SIKDQMRLEDSA---YDFIDKKSVVLVIGVNGV 116 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT +GKL+ + G KV+LAA DTFR+ AI+QLK W++R D + G+D AA+ Sbjct: 117 GKTTSVGKLAASLKGQGKKVLLAAADTFRAGAIEQLKEWSNRAGVDIISQAEGADPAAVV 176 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A A+A+ VDVL+ DTAGRLHN LM + K+ R++++ A L VLD TTG Sbjct: 177 YDAVAAAKARDVDVLLCDTAGRLHNKKNLMNELSKINRIIQKEYSEAYLETLIVLDGTTG 236 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q + F +G+I+TK+DGTA+GG I I IPV ++G+GE ++DL+ F Sbjct: 237 QNAMAQAKQFKEATDISGIILTKLDGTAKGGIAIAIQSELGIPVKYIGIGEQVDDLQRF- 295 Query: 303 AKDFSAVITGCLDYGEE 319 D + + GEE Sbjct: 296 --DPDMFVNALFEKGEE 310 >gi|212550480|ref|YP_002308797.1| signal recognition particle receptor FtsY [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548718|dbj|BAG83386.1| signal recognition particle receptor FtsY [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 319 Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 116/308 (37%), Positives = 178/308 (57%), Gaps = 12/308 (3%) Query: 15 RKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 + L +G T L I ++ + ++D + + LE++LI SD+GV +I+E + + Sbjct: 15 KSLAEGLLKTRESLFRKIARSVAGKSKIDRELLDNLEEILIDSDMGVKTTLQIIERIENR 74 Query: 74 ----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVNGVGKT 125 RYA + +L E I ML DF S +P+VI+VVGVNGVGKT Sbjct: 75 TIRGRYANIDELTPILI---EEIVSMLQDNDVEEVEDFVIPDSKKPYVIMVVGVNGVGKT 131 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+ ++ L A DTFR+AA++QL +W++R V +G+D A++ ++ Sbjct: 132 TTIGKLAYHFKKKDKRIFLGAADTFRAAAVEQLNVWSERVGVPIVKQRMGADPASVVHDT 191 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A A D++IIDTAGRLHN LM + K+ V+K++ P+APH +L VLD++TGQNA Sbjct: 192 LTSAIANNADIVIIDTAGRLHNKIGLMNELTKIKNVIKKIIPYAPHEILLVLDSSTGQNA 251 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 Q E F T L +TK+DGTA+GG ++ I ++PV ++G+GE + DL+ F ++ Sbjct: 252 YNQAEKFSKATEITSLAITKLDGTAKGGVVVGISNQLQVPVKYIGIGERLEDLQIFRKRE 311 Query: 306 FSAVITGC 313 F + G Sbjct: 312 FVNSLFGS 319 >gi|307706700|ref|ZP_07643506.1| signal recognition particle-docking protein FtsY [Streptococcus mitis SK321] gi|307617944|gb|EFN97105.1| signal recognition particle-docking protein FtsY [Streptococcus mitis SK321] Length = 421 Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 108/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K N+D F Sbjct: 158 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDEQIHFQD 215 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 216 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 275 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A ++ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 276 VTGPEKADPASVVFDGMERAVSEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 335 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 336 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 395 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 396 GFGEKIDDIGEFNSENF 412 >gi|210612577|ref|ZP_03289368.1| hypothetical protein CLONEX_01570 [Clostridium nexile DSM 1787] gi|210151502|gb|EEA82509.1| hypothetical protein CLONEX_01570 [Clostridium nexile DSM 1787] Length = 309 Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 131/301 (43%), Positives = 186/301 (61%), Gaps = 6/301 (1%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67 E + ++L +G T + GI I + +DD EELE++LI D+GV +++ Sbjct: 3 EKKGFFKRLVEGLTKTRDNIVSGIDSIFNGFSNIDDDFYEELEEILIMGDLGVHATMEVI 62 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIH--KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 E+L K+ K+ ++ LI K M + + ++F R V+L++GVNGVGKT Sbjct: 63 EDL--KKKVKENHIKEPADCKQFLIDSIKEQMDVGEA-AYEFEDRTSVVLIIGVNGVGKT 119 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+ K+ KV+LAA DTFR+AA +QLK WA+R A+ + + GSD A++ Y+A Sbjct: 120 TTIGKLAGKLRAQNKKVVLAAADTFRAAAGEQLKEWANRAEAELIGGQEGSDPASVVYDA 179 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+A+K DVL++DTAGRLHN LM + K+ RVL+R P A L VLD TTGQNA Sbjct: 180 VAAAKARKADVLLVDTAGRLHNKKNLMEELRKINRVLEREYPDAYRETLVVLDGTTGQNA 239 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L Q + F VA TG+++TKMDGTA+GG + I IPV ++GVGE I+DL+ F + D Sbjct: 240 LAQAKEFKDVADITGIVLTKMDGTAKGGIAVAIQSELGIPVKYIGVGESIDDLQKFNSDD 299 Query: 306 F 306 F Sbjct: 300 F 300 >gi|308189636|ref|YP_003922567.1| cell division protein [Mycoplasma fermentans JER] gi|307624378|gb|ADN68683.1| cell division protein [Mycoplasma fermentans JER] Length = 355 Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 107/276 (38%), Positives = 165/276 (59%), Gaps = 12/276 (4%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 + +++ +ELE++LI SDI + I+ + + A+ + + D+ EL+ + Sbjct: 72 KEINEEFFDELEEILIMSDINAKLVYAIITHIKNEVRARGLKDTK---DIGELVADQMFV 128 Query: 99 L-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 + N+ R ++ + VGVNG GKTT I K++ K G KV++AAGDTFR Sbjct: 129 VYTNKSIVDTTLNYQ-DGRLNIFIFVGVNGSGKTTSIAKIAYKYIKEGKKVLIAAGDTFR 187 Query: 152 SAAIDQLKIWADRTSADFVCS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 + A+DQL +WA+R A V + G+D +++ YEA ++AQ +K D+L+IDTAGRL N Sbjct: 188 AGAVDQLGVWAERVGAPIVKPVKEGADPSSVVYEALEKAQNEKYDLLLIDTAGRLQNKVN 247 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + KM ++ R APH L VLDATTGQN + Q F VA TG+I+TKMDGT+ Sbjct: 248 LMKELEKMYGIIARFQDKAPHECLLVLDATTGQNGVSQARSFKEVAAPTGIILTKMDGTS 307 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +GG ++ I + V ++G+GEG++DL+ F +F Sbjct: 308 KGGIVLSIKDEFDLNVKYIGLGEGLDDLQEFDLDNF 343 >gi|221633792|ref|YP_002523018.1| signal recognition particle-docking protein FtsY [Thermomicrobium roseum DSM 5159] gi|221157064|gb|ACM06191.1| signal recognition particle-docking protein FtsY [Thermomicrobium roseum DSM 5159] Length = 320 Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 117/311 (37%), Positives = 173/311 (55%), Gaps = 13/311 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L G + + I + ++D + ++LE LLI++D+GVA + ++E L + Sbjct: 16 QLESGLKRSRQGIFRQIVQLFERSQIDRELFDDLEALLIQADLGVATTEALLERLQERVR 75 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR------PHVILVVGVNGVGKTTVIG 129 +V R + E + + ++ L + + + P V LVVGVNG GKTT I Sbjct: 76 RGEV---RDPVEAREALREEMVALLEAAMRNRRVKIYQRGVPFVSLVVGVNGTGKTTTIA 132 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL++ D G V+L A DTFR+AAIDQLK W +R + G+D A+ ++ + A Sbjct: 133 KLARYHLDQGRTVLLVAADTFRAAAIDQLKAWGERLGVPVIAHAPGADPGAVVFDGMQAA 192 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + +DVL+IDTAGRLH S LMA + K+ RV++R P APH VL V+DATTGQN L Q Sbjct: 193 HNRGIDVLLIDTAGRLHTKSNLMAELAKIRRVIQRHVPDAPHEVLLVIDATTGQNGLNQA 252 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 +F AG T + +TK+DGTA+GG I IP+ ++G GE D F D A Sbjct: 253 RVFTEAAGVTDIALTKLDGTAKGGIAFAIARELGIPIAYVGTGEKPTDFAEF---DPEAY 309 Query: 310 ITGCLDYGEEK 320 + L +G+E+ Sbjct: 310 VD-ALFFGDEE 319 >gi|314930538|gb|EFS94369.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL067PA1] Length = 396 Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 115/292 (39%), Positives = 182/292 (62%), Gaps = 12/292 (4%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQR 83 L G+ +++S+ +LDD ++ E LI SD+GV ++VE+L ++ +S + Sbjct: 105 LARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDPAHARE 164 Query: 84 VLYDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 VL+ EL+ + + + N D +P V+L+VGVNG GKTT GKL++ ++ G V Sbjct: 165 VLH--HELVELVGSDMDRSINLDRLEGKPAVVLMVGVNGTGKTTTCGKLARVLAAEGKTV 222 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +L A DTFR+AA +QL+ W +R V + G+D A++AYEA + + VDV+++DTA Sbjct: 223 LLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQTGIDEGVDVVLVDTA 282 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRLH + LM +GK+ RV+++L P + VL VLDATTGQN L Q +F V TG++ Sbjct: 283 GRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLAQARVFSEVVDVTGIV 340 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 ++K+DG+A+GG ++ + +PV +G+GEG +DL PF A +F +TG + Sbjct: 341 LSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNF---VTGLM 389 >gi|253701891|ref|YP_003023080.1| signal recognition particle-docking protein FtsY [Geobacter sp. M21] gi|251776741|gb|ACT19322.1| signal recognition particle-docking protein FtsY [Geobacter sp. M21] Length = 409 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/292 (41%), Positives = 178/292 (60%), Gaps = 3/292 (1%) Query: 12 SWIRKLTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 S+ +L K + T + + T ++ +++D EELE++LI +D+GV ++ L Sbjct: 108 SFFERLKKSLSKTHESIVGRVDTLLLGKKQIDTDTLEELEEILITADLGVKTTVDLIRTL 167 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + ++ L + E I LM + P +P VILV+GVNGVGKTT IG Sbjct: 168 EQRLKRDELQDGEALKKALKEEIQLRLMAHAAPLVVT-DKKPFVILVIGVNGVGKTTTIG 226 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + + G KV+LAA DTFR+AA +QL++W+ R AD V + G+D +A+ ++A K A Sbjct: 227 KLAARYAGEGKKVLLAAADTFRAAAAEQLELWSQRVGADIVRHKEGADPSAVVFDACKAA 286 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A+ DVLIIDTAGR+H LM + K+ RVL R P APH L VLDA TGQNAL Q Sbjct: 287 VARGTDVLIIDTAGRMHTKVNLMEEMKKIRRVLTREIPDAPHETLLVLDAATGQNALSQA 346 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 ++F A +G+++TK+DG+A+GG ++ + + +PV F+GVGE + DL F Sbjct: 347 KLFKEAAFVSGVVLTKLDGSAKGGVVVAVSNEYALPVRFIGVGESVEDLREF 398 >gi|158336916|ref|YP_001518091.1| signal recognition particle GTPase [Acaryochloris marina MBIC11017] gi|158307157|gb|ABW28774.1| signal recognition particle GTPase [Acaryochloris marina MBIC11017] Length = 501 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 109/308 (35%), Positives = 187/308 (60%), Gaps = 5/308 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++V+ E +SW++KL +G T L + ++ L+ +E LL+++D+G++ Sbjct: 187 EEVSVEEISWLQKLRQGLGKTRRGLANQLKSVVGQGPLNADAVMAIESLLLQADVGISAT 246 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVVGV 119 K++E L TK + + + + E++ +L P K ++ +F+ + ++ L+ GV Sbjct: 247 DKLIEALQTKVREETLPPDAAIAYLKEIMQDILDAPTQKNYSPNFAPKREGMNIWLMTGV 306 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178 NG GKTT IGKL+ ++G ++AA DTFR+AA++Q+K+W R++ D + + +D Sbjct: 307 NGAGKTTTIGKLAHISKESGYDCLIAAADTFRAAAVEQVKVWGQRSNVDVIANPGQNTDP 366 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A AQ + +D+L++DTAGRL N LM + K+ R++ + P A L VLD Sbjct: 367 AAVVFDAITAAQKRNIDLLLVDTAGRLQNKKNLMDELNKVRRIVSKKAPDAHIESLLVLD 426 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 AT GQN LRQ ++F A TG+++TK+DG+A+GG + +V +P+ F+G GEGI DL Sbjct: 427 ATLGQNGLRQAQVFSEAAELTGVVLTKLDGSAKGGVALAVVQELGLPIRFIGAGEGITDL 486 Query: 299 EPFVAKDF 306 PF + +F Sbjct: 487 RPFSSYEF 494 >gi|114777656|ref|ZP_01452616.1| cell division protein FtsY [Mariprofundus ferrooxydans PV-1] gi|114551872|gb|EAU54406.1| cell division protein FtsY [Mariprofundus ferrooxydans PV-1] Length = 275 Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 107/285 (37%), Positives = 171/285 (60%), Gaps = 16/285 (5%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREE---LEDLLIRSDIGVAVAQKIVE 68 S+ +L KG + +EG+ +I R +D ++ +ED LI +D G ++ +V+ Sbjct: 3 SFFSRLKKGLTRS----REGLAQLIPGRDVDVLSADDWMDIEDGLIMADCGAELSTALVK 58 Query: 69 ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + +R +++ + + ++P + P + P V+LVVGVNG GKTT I Sbjct: 59 SVRKRRGGSVAALKSAMLE--------MLPDAPPVT-QATDGPFVLLVVGVNGTGKTTTI 109 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ G V++ AGDTFR+AA++QL +W +R AD V G+D AA+A++ ++ Sbjct: 110 GKLATMFRAEGKSVLVGAGDTFRAAAVEQLAVWVERAGADMVRQSEGADPAAVAFDTIQR 169 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ DV+I+DTAGR+ + LM + K+ RV+ + P APH V QV+D TGQNA+ Q Sbjct: 170 GLARAYDVVIVDTAGRVQTDRGLMDELAKVRRVITKAYPAAPHEVWQVVDGGTGQNAVVQ 229 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 VE F VAGTTGLI+TK+DG+ +GG ++ + +P+ ++GVG+ Sbjct: 230 VEKFREVAGTTGLIVTKLDGSGKGGIVLQLTEKFGLPIRYVGVGK 274 >gi|149007093|ref|ZP_01830762.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae SP18-BS74] gi|307127166|ref|YP_003879197.1| cell division protein FtsY [Streptococcus pneumoniae 670-6B] gi|147761397|gb|EDK68363.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae SP18-BS74] gi|306484228|gb|ADM91097.1| cell division protein FtsY [Streptococcus pneumoniae 670-6B] gi|332074577|gb|EGI85051.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae GA17545] Length = 429 Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 108/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K ++D F Sbjct: 166 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 223 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 224 NLTVMLFVGVNGVGKTTSIGKLAHRYKRAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 283 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 284 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 343 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 344 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 403 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 404 GFGEKIDDIGEFNSENF 420 >gi|313813546|gb|EFS51260.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL025PA1] gi|327334312|gb|EGE76026.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL097PA1] Length = 396 Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 115/292 (39%), Positives = 181/292 (61%), Gaps = 12/292 (4%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQR 83 L G+ +++S+ +LDD ++ E LI SD+GV ++VE+L ++ +S + Sbjct: 105 LARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDPAHARE 164 Query: 84 VLYDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 VL+ EL+ + + + N D +P V+L+VGVNG GKTT GKL++ + G V Sbjct: 165 VLH--HELVELVGSDMDRSINLDRLEGKPAVVLIVGVNGTGKTTTCGKLARVLVAEGKTV 222 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +L A DTFR+AA +QL+ W +R V + G+D A++AYEA + + VDV+++DTA Sbjct: 223 LLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQAGIDEGVDVVLVDTA 282 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRLH + LM +GK+ RV+++L P + VL VLDATTGQN L Q +F V TG++ Sbjct: 283 GRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLTQARVFSEVVDVTGIV 340 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 ++K+DG+A+GG ++ + +PV +G+GEG +DL PF A +F +TG + Sbjct: 341 LSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNF---VTGLM 389 >gi|197303073|ref|ZP_03168121.1| hypothetical protein RUMLAC_01800 [Ruminococcus lactaris ATCC 29176] gi|197297928|gb|EDY32480.1| hypothetical protein RUMLAC_01800 [Ruminococcus lactaris ATCC 29176] Length = 319 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 128/303 (42%), Positives = 182/303 (60%), Gaps = 4/303 (1%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64 + E + R+L G T + G+ I R+DD EELE+ LI D+GV Sbjct: 1 MGEEKKGFFRRLVSGLTKTRDNIVSGMDSIFHGFSRIDDDFYEELEETLIMGDLGVRATM 60 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVG 123 I+E+L K K+ ++ L LI + + ++F +R V+ V+GVNGVG Sbjct: 61 DIIEDL--KEKVKEQHIKEPLECRQLLIDSIREQMDVGETAYEFENRTSVVFVIGVNGVG 118 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+ K+ D KV+LAA DTFR+AA +QL+ WA+R + + + G+D A++ Y Sbjct: 119 KTTTIGKLAGKLKDQNKKVILAAADTFRAAAGEQLREWANRAGVEMIGGQEGADPASVVY 178 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A A+A+K DVL+ DTAGRLHN LM + K+ RV+ R P A L VLDATTGQ Sbjct: 179 DAVAAAKARKADVLLCDTAGRLHNKKNLMEELKKINRVIDREYPDAFRETLVVLDATTGQ 238 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NAL Q + F+ V TG+++TKMDGTA+GG + I IPV ++GVGE I+DL+ F + Sbjct: 239 NALAQAKEFNEVTDITGIVLTKMDGTAKGGIAVAIQAELGIPVKYIGVGETIDDLQKFDS 298 Query: 304 KDF 306 ++F Sbjct: 299 EEF 301 >gi|256384103|gb|ACU78673.1| peptidase, M41 family [Mycoplasma mycoides subsp. capri str. GM12] gi|256384935|gb|ACU79504.1| peptidase, M41 family [Mycoplasma mycoides subsp. capri str. GM12] gi|296455878|gb|ADH22113.1| peptidase, M41 family [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 409 Score = 192 bits (488), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 104/271 (38%), Positives = 171/271 (63%), Gaps = 9/271 (3%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 ++ DD EELED+LI++D+G+ + K V L+ K+ +D S + + + E +++ Sbjct: 119 KQADDEFFEELEDVLIQTDMGMKMVLK-VSNLVRKKTKRDTSFENIKDALVESLYQAYTD 177 Query: 99 ---LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 +K + DF +R ++ ++VGVNG GKTT + K++ ++ G KV++AA DTFR+ A Sbjct: 178 NDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGA 237 Query: 155 IDQLKIWAD---RTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 QL+ W D V +++ +D A++ ++A K+A+ + D+L+IDTAGRL N + Sbjct: 238 TQQLEEWIKTRLNNKVDLVKTNKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTN 297 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LMA + KM +++++++ APH VL V+DATTGQN + Q E F VA +G+I+TKMD T+ Sbjct: 298 LMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTS 357 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +GG + I IP+ +GVGE ++DL F Sbjct: 358 KGGIGLAIKELLNIPIKMIGVGEKVDDLLAF 388 >gi|229527114|ref|ZP_04416508.1| signal recognition particle receptor protein FtsY [Vibrio cholerae 12129(1)] gi|229335345|gb|EEO00828.1| signal recognition particle receptor protein FtsY [Vibrio cholerae 12129(1)] Length = 344 Score = 192 bits (488), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 103/251 (41%), Positives = 160/251 (63%), Gaps = 1/251 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 93 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 152 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + + LY + E + ++L + KP D +P+VIL+VGVNGVGKTT IGK Sbjct: 153 AKASRQQLRDGEALYGLLKEEMAEILSQVEKPLVIDTEKKPYVILMVGVNGVGKTTTIGK 212 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A + A+ Sbjct: 213 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 272 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q + Sbjct: 273 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 332 Query: 251 MFHAVAGTTGL 261 +F VA TG+ Sbjct: 333 LFSDVAPITGI 343 >gi|224130192|ref|XP_002320775.1| predicted protein [Populus trichocarpa] gi|222861548|gb|EEE99090.1| predicted protein [Populus trichocarpa] Length = 365 Score = 192 bits (488), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 107/274 (39%), Positives = 170/274 (62%), Gaps = 9/274 (3%) Query: 43 DGVREELEDLLIRSDIG----VAVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLM 97 D V +ELE+ L+ SD G + + +K+ E++L + ++ L V +L+ K Sbjct: 93 DRVLDELEEALLVSDFGPRITIQIVEKLREDILAGKLKSGSEIKDALKKSVLDLLQKKGN 152 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 + +P V+++VGVNG GKTT +GKL+ ++ + G K+++AAGDTFR+AA DQ Sbjct: 153 KTELQLGF---RKPAVVMIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQ 209 Query: 158 LKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 L+IWA+RT + V ++ + A+++ +A K+ + ++ DV++ DT+GRLH N LM + Sbjct: 210 LEIWAERTGCEIVVADREKAKASSVLSQAVKKGKEQEFDVVLCDTSGRLHTNYSLMEELI 269 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + + ++ AP+ +L VLD TTG N L Q F+ V G TG I+TK+DG+ARGG ++ Sbjct: 270 ACKKAVGKIVRGAPNEILLVLDGTTGLNMLPQAREFNEVVGITGFILTKLDGSARGGCVV 329 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +V IPV F+GVGEG+ DL+PF A+ F I Sbjct: 330 SVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 363 >gi|94984837|ref|YP_604201.1| signal recognition particle-docking protein FtsY [Deinococcus geothermalis DSM 11300] gi|94555118|gb|ABF45032.1| signal recognition particle-docking protein FtsY [Deinococcus geothermalis DSM 11300] Length = 317 Score = 192 bits (488), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 126/313 (40%), Positives = 177/313 (56%), Gaps = 25/313 (7%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISS-----RRLDDGVREELEDLLIRSDIGVAVAQK 65 +SW+ +L G + T +L E D+ + RLD E+LE LI +D+G A ++ Sbjct: 1 MSWLARLRDGLSKTRKQLNEAAGDLGTDVREALTRLD--TVEDLEYALIAADVGRAATEE 58 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-------FNWD-----FSHRPHV 113 I+E++ + + ++Q L D L L P ++ F D R HV Sbjct: 59 ILEDV---KASDRRNLQDALMDALTL---QLEPDARRAQFRKLGFTPDARRTVVDPRGHV 112 Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 +++VGVNGVGKTT I KL + G VM AAGDTFR+AA QL +W +R V Sbjct: 113 VMIVGVNGVGKTTTIAKLGQYYMGRGKTVMFAAGDTFRAAAGAQLGVWGERLGVPVVQGP 172 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 G D AA+A++A A+ D+L +DTAGRLH LM + K+ RV+ + DP P V Sbjct: 173 EGGDPAAVAFDAATARAARGTDLLFVDTAGRLHTKHNLMEELKKVRRVIDKADPGEPAEV 232 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 VLDA TGQN L Q + FH TG+I+TK+DGTA+GG LIPIV +P+ F+GVGE Sbjct: 233 WLVLDAVTGQNGLAQAKKFHEATPLTGVIVTKLDGTAKGGILIPIVRELGVPIKFIGVGE 292 Query: 294 GINDLEPFVAKDF 306 +DL+PF +++F Sbjct: 293 QPDDLQPFDSREF 305 >gi|169824542|ref|YP_001692153.1| signal recognition particle protein [Finegoldia magna ATCC 29328] gi|167831347|dbj|BAG08263.1| signal recognition particle protein [Finegoldia magna ATCC 29328] Length = 378 Score = 192 bits (488), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 118/305 (38%), Positives = 179/305 (58%), Gaps = 13/305 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + KL T + I ++++ R +D+ + EE+E+ LI +DIGV KIV +L Sbjct: 78 FFEKLKNSLLKTRDNISNKIDQVLANYRTVDEELFEEIEETLISADIGVDTTLKIVGQLR 137 Query: 72 TK---RYAKDVS-VQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 + R +D S ++ VL D+ +I++ + N D +ILVVGVNGVGKT Sbjct: 138 DQVKLRNIQDPSKIKSVLADILKENIINE---KIDNNLNVD---EKTIILVVGVNGVGKT 191 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+ K G KV++ A DTFR+AAI+QL W++R D + + G+D A++ ++ Sbjct: 192 TTIGKLAMKYKKDGKKVLMVAADTFRAAAIEQLTEWSNRAKVDIISHKEGADPASVVFDG 251 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 +++ D+LI DTAGRLHN LM + K+ RV+++ P A +L ++D TTGQNA Sbjct: 252 VNAMKSRNTDILICDTAGRLHNKKNLMNELNKIKRVIEKEYPEAKKEILLIVDGTTGQNA 311 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + Q + F TG I+TK+DGTA+GG + P+ + IPV F+G+GE +NDL F + Sbjct: 312 IIQAKEFMNATDLTGAIITKLDGTAKGGMIFPLEMELGIPVKFIGIGEQVNDLVKFEPEK 371 Query: 306 FSAVI 310 F I Sbjct: 372 FIEAI 376 >gi|257452334|ref|ZP_05617633.1| Signal recognition particle receptor FtsY [Fusobacterium sp. 3_1_5R] Length = 334 Score = 192 bits (488), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 108/257 (42%), Positives = 156/257 (60%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113 I+SDIG+ + QKIV +L + V +Y V + + + + S+ + V Sbjct: 76 IQSDIGLEMTQKIVTDLEKAVKKQGVQNPEEVYPVLKTVMEEYLIESEEEFPREEEQLQV 135 Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 IL+VGVNGVGKTT IGK++ K+ G KV+L AGDTFR+AA++QL+ WA R+ A+ V + Sbjct: 136 ILIVGVNGVGKTTTIGKIAAKLKKEGKKVVLGAGDTFRAAAVEQLEEWAKRSEAEIVKGK 195 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 G+D ++ ++ +A+ DV IIDTAGRLHN + LM + K+ V+++ + Sbjct: 196 EGADPGSVVFDTLTKAEELGADVAIIDTAGRLHNKAYLMKELEKINNVVRKKIGERHYES 255 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L V+D TTGQNAL Q F+ V TG I+TK+DGTA+GG + + K P+ F+GVGE Sbjct: 256 LLVIDGTTGQNALNQAREFNEVTHLTGFIITKLDGTAKGGIVFSLSELLKKPIRFIGVGE 315 Query: 294 GINDLEPFVAKDFSAVI 310 I DL F KDF A + Sbjct: 316 KIEDLRKFSKKDFIAAL 332 >gi|317058877|ref|ZP_07923362.1| cell division protein ftsY [Fusobacterium sp. 3_1_5R] gi|313684553|gb|EFS21388.1| cell division protein ftsY [Fusobacterium sp. 3_1_5R] Length = 337 Score = 192 bits (488), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 108/257 (42%), Positives = 156/257 (60%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113 I+SDIG+ + QKIV +L + V +Y V + + + + S+ + V Sbjct: 79 IQSDIGLEMTQKIVTDLEKAVKKQGVQNPEEVYPVLKTVMEEYLIESEEEFPREEEQLQV 138 Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 IL+VGVNGVGKTT IGK++ K+ G KV+L AGDTFR+AA++QL+ WA R+ A+ V + Sbjct: 139 ILIVGVNGVGKTTTIGKIAAKLKKEGKKVVLGAGDTFRAAAVEQLEEWAKRSEAEIVKGK 198 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 G+D ++ ++ +A+ DV IIDTAGRLHN + LM + K+ V+++ + Sbjct: 199 EGADPGSVVFDTLTKAEELGADVAIIDTAGRLHNKAYLMKELEKINNVVRKKIGERHYES 258 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L V+D TTGQNAL Q F+ V TG I+TK+DGTA+GG + + K P+ F+GVGE Sbjct: 259 LLVIDGTTGQNALNQAREFNEVTHLTGFIITKLDGTAKGGIVFSLSELLKKPIRFIGVGE 318 Query: 294 GINDLEPFVAKDFSAVI 310 I DL F KDF A + Sbjct: 319 KIEDLRKFSKKDFIAAL 335 >gi|163814046|ref|ZP_02205438.1| hypothetical protein COPEUT_00199 [Coprococcus eutactus ATCC 27759] gi|158450495|gb|EDP27490.1| hypothetical protein COPEUT_00199 [Coprococcus eutactus ATCC 27759] Length = 335 Score = 192 bits (487), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 126/312 (40%), Positives = 184/312 (58%), Gaps = 11/312 (3%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L +G A T + E D+ + +DD E LE+ I +D+G +K++E+L Sbjct: 20 FFARLKEGLAKTRNNIVESFADVFGASHIDDDFYENLEETFIMADMGYETTEKVIEDL-- 77 Query: 73 KRYAKDVSVQRVLYDVSELIHKML---MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 K+ +D ++ EL+ ++ M + + +DF ++ V+LV+GVNGVGKTT IG Sbjct: 78 KQRVEDSHIKEPAA-CKELVINIIRDQMSVDES-AYDFENKKTVVLVIGVNGVGKTTTIG 135 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G +V++AA DTFR+AAIDQLK WADR D + G+D AA+ Y+A A Sbjct: 136 KLAAQYRQRGKRVLMAAADTFRAAAIDQLKTWADRAQVDIISHNEGADPAAVVYDAVAAA 195 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ D+L++DTAGRLHN LM + KM R++ R P A L VLD TTGQNAL Q Sbjct: 196 KARNTDILLVDTAGRLHNKKNLMDELAKMRRIITRDYPEANVEALIVLDGTTGQNALEQA 255 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 F V G+++TK+DGTA+GG I I +PV F+GVGE I DL+ F D A Sbjct: 256 RQFSNVTELDGIVITKLDGTAKGGIAIAIQSELDVPVKFIGVGEKIGDLQRF---DPQAY 312 Query: 310 ITGCL-DYGEEK 320 + D+ E++ Sbjct: 313 VNALFADFDEDR 324 >gi|229829001|ref|ZP_04455070.1| hypothetical protein GCWU000342_01086 [Shuttleworthia satelles DSM 14600] gi|229792164|gb|EEP28278.1| hypothetical protein GCWU000342_01086 [Shuttleworthia satelles DSM 14600] Length = 474 Score = 192 bits (487), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 116/269 (43%), Positives = 167/269 (62%), Gaps = 4/269 (1%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99 R+D+ EELE++LI D+GV + +++E L ++ KD ++ LI + + Sbjct: 31 RIDEDFYEELEEVLISGDLGVQTSMRLIENL--RQEVKDQHIKEAGDCRQLLIDDIRRQM 88 Query: 100 SKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQ 157 N +DF V+++VGVNGVGKTT +GKL+ K K V++AA DTFR+AA +Q Sbjct: 89 DVGENAYDFEQETSVLMMVGVNGVGKTTTVGKLAAKFKQEKKKRVLIAAADTFRAAANEQ 148 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 LK WADR D + + GSD AA+ ++A + A+A+ D+L++DTAGRLHN + LM + K Sbjct: 149 LKEWADRAGVDMIGGQEGSDPAAVVFDAVQSAKARNCDILLVDTAGRLHNKTNLMHELEK 208 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + RV+ R L VLDAT+GQNAL Q F AVA TG+++TKMDG+A+GG + Sbjct: 209 INRVIDREYEGVHRETLAVLDATSGQNALVQAREFAAVANVTGIVLTKMDGSAKGGIAVA 268 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 I IPV ++GVGE + DLE F A + Sbjct: 269 IQSELGIPVKYIGVGETVEDLERFDADQY 297 >gi|312135008|ref|YP_004002346.1| signal recognition particle-docking protein ftsy [Caldicellulosiruptor owensensis OL] gi|311775059|gb|ADQ04546.1| signal recognition particle-docking protein FtsY [Caldicellulosiruptor owensensis OL] Length = 301 Score = 192 bits (487), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 123/301 (40%), Positives = 190/301 (63%), Gaps = 12/301 (3%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L +G + T E + ++ S +++DD + EELE++L+ SD+GV +QKI+E Sbjct: 1 MGFFDRLKEGLSKTKKNFTEKVESLLKSFKQVDDELFEELEEILVLSDVGVKTSQKIIEN 60 Query: 70 LLTKRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 L + + +S ++++L + I + LS+ + P +IL+VGVNGVGKT Sbjct: 61 LKERVKKEKISDSQAIKKILKEEMLNIIDLENKLSEKY-------PLIILMVGVNGVGKT 113 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGK++ + G KV++AA DTFR+AA +QL+IWA R D + G+D AA+ ++ Sbjct: 114 TSIGKIANLLKSNGKKVLIAAADTFRAAAAEQLEIWAKRVGCDIIKHVEGADPAAVVFDG 173 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + +A+K DVLI+DTAGRLH L+ + K+ RV+ + P A L V+DATTGQNA Sbjct: 174 IQAMRARKADVLIVDTAGRLHTKKNLIEELKKIDRVINQQMPEASKETLLVIDATTGQNA 233 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L Q + F+ +G+++TK+DGTA+GG +I I KIPV F+GVGE I+DL+ F AK+ Sbjct: 234 LNQAKEFNQAVNISGIVLTKLDGTAKGGIVISICDELKIPVKFVGVGEKIDDLQYFNAKE 293 Query: 306 F 306 F Sbjct: 294 F 294 >gi|302380338|ref|ZP_07268808.1| signal recognition particle-docking protein FtsY [Finegoldia magna ACS-171-V-Col3] gi|303233693|ref|ZP_07320347.1| signal recognition particle-docking protein FtsY [Finegoldia magna BVS033A4] gi|302311828|gb|EFK93839.1| signal recognition particle-docking protein FtsY [Finegoldia magna ACS-171-V-Col3] gi|302495127|gb|EFL54879.1| signal recognition particle-docking protein FtsY [Finegoldia magna BVS033A4] Length = 378 Score = 192 bits (487), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 118/305 (38%), Positives = 178/305 (58%), Gaps = 13/305 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + KL T + I ++++ R +D+ + EE+E+ LI +DIGV KIV +L Sbjct: 78 FFEKLKNSLLKTRDNISNKIDQVLANYRTVDEELFEEIEETLISADIGVDTTLKIVGQLR 137 Query: 72 TK---RYAKDVS-VQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 + R +D S ++ VL D+ +I+ + N D +ILVVGVNGVGKT Sbjct: 138 DQVKLRNIQDPSKIKNVLADILKENIIND---KIDNNLNVD---EKTIILVVGVNGVGKT 191 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+ K G KV++ A DTFR+AAI+QL W++R D + + G+D A++ ++ Sbjct: 192 TTIGKLAMKYKKDGKKVLMVAADTFRAAAIEQLTEWSNRAKVDIISHKEGADPASVVFDG 251 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 +++ D+LI DTAGRLHN LM + K+ RV+++ P A +L ++D TTGQNA Sbjct: 252 VNAMKSRNTDILICDTAGRLHNKKNLMNELNKIKRVIEKEYPEAKKEILLIVDGTTGQNA 311 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + Q + F TG I+TK+DGTA+GG + P+ + IPV F+G+GE +NDL F + Sbjct: 312 IIQAKEFMNATDLTGAIITKLDGTAKGGMIFPLEMELGIPVKFIGIGEQVNDLVKFEPEK 371 Query: 306 FSAVI 310 F I Sbjct: 372 FIEAI 376 >gi|166363209|ref|YP_001655482.1| cell division protein [Microcystis aeruginosa NIES-843] gi|166085582|dbj|BAG00290.1| cell division protein [Microcystis aeruginosa NIES-843] Length = 451 Score = 192 bits (487), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 112/315 (35%), Positives = 190/315 (60%), Gaps = 6/315 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + V+ E ++W++KL +G T L + ++ L+ EE+E LL+++D+GV Sbjct: 136 EDVSEEEITWLKKLRQGLGKTRRSLVNQLKAVVGQGPLNQDAVEEIEALLLQADVGVDAT 195 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVVGV 119 I+ L K + + ++ + + E+I ++L PL+ N F ++ ++ GV Sbjct: 196 DYIITTLQNKLKQEALPPEKAIEYLKEIIREILDAPLANYSNPGFEPEKGKLNIWMLTGV 255 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178 NGVGKTT IGKL+ +G M+AA DTFR+AA++Q+K+W +R+ + + + +D Sbjct: 256 NGVGKTTTIGKLAHLSKQSGYSCMIAAADTFRAAAVEQVKVWGERSQVEVIANPGKNTDP 315 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ Y+ + A+++++++L++DTAGRL N LMA + K+ R++ + A L VLD Sbjct: 316 AAVVYDGIEAAKSREIELLLVDTAGRLQNKKNLMAELSKIRRIIDKKAESAVVESLLVLD 375 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 AT GQN LRQ E+F A +G+I+TK+DGTA+GG + + +P+ F+G GEGI DL Sbjct: 376 ATLGQNGLRQAEVFSEAAQLSGVILTKIDGTAKGGVALAVARQLNLPIRFVGAGEGIEDL 435 Query: 299 EPFVAKDF-SAVITG 312 PF + +F A+++G Sbjct: 436 RPFSSYEFVEALLSG 450 >gi|331703488|ref|YP_004400175.1| cell division protein FtsY [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802043|emb|CBW54197.1| Cell division protein FtsY [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 412 Score = 192 bits (487), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 104/271 (38%), Positives = 171/271 (63%), Gaps = 9/271 (3%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 ++ DD EELED+LI++D+G+ + K V L+ K+ +D S + + + E +++ Sbjct: 122 KQADDEFFEELEDVLIQTDMGMKMVLK-VSNLVRKKTKRDTSFENIKDALVESLYQAYTD 180 Query: 99 ---LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 +K + DF +R ++ ++VGVNG GKTT + K++ ++ G KV++AA DTFR+ A Sbjct: 181 NDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGA 240 Query: 155 IDQLKIWAD---RTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 QL+ W D V +++ +D A++ ++A K+A+ + D+L+IDTAGRL N + Sbjct: 241 TQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTN 300 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LMA + KM +++++++ APH VL V+DATTGQN + Q E F VA +G+I+TKMD T+ Sbjct: 301 LMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTS 360 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +GG + I IP+ +GVGE ++DL F Sbjct: 361 KGGIGLAIKELLNIPIKMIGVGEKVDDLLAF 391 >gi|312143706|ref|YP_003995152.1| signal recognition particle-docking protein FtsY [Halanaerobium sp. 'sapolanicus'] gi|311904357|gb|ADQ14798.1| signal recognition particle-docking protein FtsY [Halanaerobium sp. 'sapolanicus'] Length = 307 Score = 192 bits (487), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 126/301 (41%), Positives = 187/301 (62%), Gaps = 8/301 (2%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +S++ +L G T +++I + R +DD + EELE++LI++D+GV ++E+ Sbjct: 1 MSFLERLKDGLKKTKEGFVNKVSNIFTGRTNIDDELFEELEEVLIQADVGVKTTFALIEK 60 Query: 70 LLTKRYAKDVSVQRVL--YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L +D+ L Y +EL ML FN+D ++I+VVGVNG GKTT Sbjct: 61 LKEDIKEEDIKEPEELMKYFQAEL-KAMLQNEEGTFNFD--KDLNIIMVVGVNGAGKTTT 117 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 I K++ + D G KVMLAAGDTFR+ AI+QL+IW DR + + + GSDAAA+AY+A + Sbjct: 118 IAKVAGRYKDQGKKVMLAAGDTFRAGAIEQLQIWGDRLGVNVIAQKEGSDAAAVAYDAVQ 177 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR--LDPHAPHSVLQVLDATTGQNA 245 A+A+ VD+LI+DTAGRLH LM + K+ RV+ R +A VL VLDATTGQNA Sbjct: 178 SAKARDVDLLIVDTAGRLHTQKNLMEELKKVKRVIDREAESANAQVEVLLVLDATTGQNA 237 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + Q ++F+ G+ +TK+DGTA+GG +I + +IP+ +GVGE DL+ F ++ Sbjct: 238 ISQAKLFNEAVDVDGIALTKLDGTAKGGIVIAVKNELQIPIKLIGVGEAAEDLQNFDPEE 297 Query: 306 F 306 F Sbjct: 298 F 298 >gi|315081322|gb|EFT53298.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL078PA1] Length = 396 Score = 192 bits (487), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 115/292 (39%), Positives = 181/292 (61%), Gaps = 12/292 (4%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQR 83 L G+ +++S+ +LDD ++ E LI SD+GV ++VE+L ++ +S + Sbjct: 105 LARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDPAHARE 164 Query: 84 VLYDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 VL+ EL+ + + + N D +P V+L+VGVNG GKTT GKL++ + G V Sbjct: 165 VLH--HELVELVGSDMDRSINLDRLEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEGKTV 222 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +L A DTFR+AA +QL+ W +R V + G+D A++AYEA + + VDV+++DTA Sbjct: 223 LLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQTGIDEGVDVVLVDTA 282 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRLH + LM +GK+ RV+++L P + VL VLDATTGQN L Q +F V TG++ Sbjct: 283 GRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLAQARVFSEVVDVTGIV 340 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 ++K+DG+A+GG ++ + +PV +G+GEG +DL PF A +F +TG + Sbjct: 341 LSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNF---VTGLM 389 >gi|168575699|ref|ZP_02721614.1| cell division protein FtsY [Streptococcus pneumoniae MLV-016] gi|307067892|ref|YP_003876858.1| hypothetical protein SPAP_1268 [Streptococcus pneumoniae AP200] gi|183578203|gb|EDT98731.1| cell division protein FtsY [Streptococcus pneumoniae MLV-016] gi|306409429|gb|ADM84856.1| hypothetical protein SPAP_1268 [Streptococcus pneumoniae AP200] Length = 425 Score = 192 bits (487), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 108/257 (42%), Positives = 153/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K ++D F Sbjct: 162 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 219 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ AG KVML A DTFR+ A+ QL W R Sbjct: 220 NLTVMLFVGVNGVGKTTSIGKLAHCYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 279 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 280 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 339 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 340 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 399 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 400 GFGEKIDDIGEFNSENF 416 >gi|307718927|ref|YP_003874459.1| signal recognition particle-docking protein FtsY [Spirochaeta thermophila DSM 6192] gi|306532652|gb|ADN02186.1| signal recognition particle-docking protein FtsY [Spirochaeta thermophila DSM 6192] Length = 289 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 110/270 (40%), Positives = 160/270 (59%), Gaps = 6/270 (2%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99 R D+ EE EDLLI +D+G A ++VEE+ +R AK V V V E+I +L Sbjct: 16 RFDEAFWEEFEDLLIEADLGAETAFEVVEEV--QRRAKKEGVVDV-EGVREVIKDVLRRY 72 Query: 100 SKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLK--VMLAAGDTFRSAAID 156 + ++ V+ L VGVNGVGKTT I K + + + V+LAAGDTFR+ AID Sbjct: 73 VRAGDFSLPDSGTVVFLFVGVNGVGKTTTIAKFAHFIRSTWGRDDVVLAAGDTFRAGAID 132 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL++W +R V + G+D AA+ ++A + + + V++ DTAGR HN + LM + Sbjct: 133 QLRVWGERLGVRVVAQQPGADPAAVIFDAIQSVERRGGGVVLADTAGRFHNRASLMDELA 192 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 K+ RV++ A + L V+DA+TGQNA RQ E+F G GL++ K DG A+GG L+ Sbjct: 193 KVDRVIRSKAADADYRRLLVVDASTGQNAFRQAEVFQETVGLDGLVLAKYDGAAKGGVLV 252 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 PI +IP F+G GEG+ DL PF +++ Sbjct: 253 PISRRLEIPAVFVGTGEGLEDLRPFDVEEY 282 >gi|269115234|ref|YP_003302997.1| Cell division FtsY-like protein [Mycoplasma hominis] gi|3334189|sp|O32861|FTSY_MYCHP RecName: Full=Cell division protein ftsY homolog gi|2292927|emb|CAA72412.1| FtsY protein [Mycoplasma hominis ATCC 23114] gi|268322859|emb|CAX37594.1| Cell division protein ftsY homolog [Mycoplasma hominis ATCC 23114] Length = 351 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 114/266 (42%), Positives = 162/266 (60%), Gaps = 9/266 (3%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDF 107 +LI SDI + + Q I+ E + ++++ + ++ D I+ + N Sbjct: 83 MLIMSDISIKLVQIIINECKKEVRNENITDPKLINEIIADKLFTIYTSNSVVDTTLNIK- 141 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 +R +VILVVGVNG GKTT I K++KK+ D G KV++AAGDTFR+AA++QL+IWA R A Sbjct: 142 DNRLNVILVVGVNGSGKTTSISKIAKKLIDEGKKVLIAAGDTFRAAAVEQLEIWAKRVGA 201 Query: 168 DFVC-SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D V +E D AA+ Y A A++KK D+LI+DTAGRL N LM + K+ RVL Sbjct: 202 DIVTPNENEVDPAAVVYRAIDIAKSKKYDILIVDTAGRLQNKVNLMNELAKINRVLASKI 261 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH L VLDATTGQN + Q +F TG+I+TKMDGT++GG ++ I + V Sbjct: 262 PDAPHESLLVLDATTGQNGVIQARVFKESTPLTGIILTKMDGTSKGGIVLTIKDEIGLFV 321 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITG 312 ++G+GE ++DL F D + I G Sbjct: 322 KYIGLGEKVDDLAEF---DLDSYIYG 344 >gi|86607811|ref|YP_476573.1| signal recognition particle-docking protein FtsY [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556353|gb|ABD01310.1| signal recognition particle-docking protein FtsY [Synechococcus sp. JA-2-3B'a(2-13)] Length = 498 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 108/304 (35%), Positives = 183/304 (60%), Gaps = 2/304 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++++ E +SW++KL +G T L L + ++ LD EE+E LL+++D+G+ Sbjct: 188 EEISVEEISWLQKLRRGLGKTRLNLINQLKALVGRGPLDQKAVEEIEALLLQADVGIDAT 247 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 ++I++ L + + V + + + + + +ML + P ++ L+VGVNG G Sbjct: 248 EQIIQALQKRMREEVVPPEEAVKYLKQQMRQMLT-VGNPTFAPQRDTLNIWLIVGVNGAG 306 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALA 182 KTT IGK++ +G + ++AA DTFR+AA++QLK+WA+R + + + +D AA+ Sbjct: 307 KTTTIGKIAHVARKSGYRCLIAAADTFRAAAVEQLKVWAERAGVEVIANPSPNADPAAVV 366 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A A+A+ ++L++DTAGRL N LM + K+ R++ + P A L VLDAT G Sbjct: 367 FDAITAAKARGTELLLVDTAGRLQNKKNLMDELAKIRRIVDKKAPEAKVESLLVLDATQG 426 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QN LRQ E+F A +G+I+TK+D TA+GG + I +P+ F+G GEG+ DL PF Sbjct: 427 QNGLRQAEVFAEAAKLSGVILTKLDSTAKGGIALAITQQMNLPIRFIGAGEGLEDLRPFS 486 Query: 303 AKDF 306 + +F Sbjct: 487 SYEF 490 >gi|313836653|gb|EFS74367.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL037PA2] gi|314928161|gb|EFS91992.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL044PA1] gi|314972159|gb|EFT16256.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL037PA3] gi|328907977|gb|EGG27737.1| signal recognition particle-docking protein FtsY [Propionibacterium sp. P08] Length = 396 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 117/293 (39%), Positives = 179/293 (61%), Gaps = 14/293 (4%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87 L G+ +++S+ +LDD ++ E LI SD+GV ++VE+L + VS Sbjct: 105 LARGLAELLSADKLDDDTWDDFETTLITSDLGVGPTTELVEKLRSGLAIDGVSDP---VH 161 Query: 88 VSELIHKMLMPLSKP-----FNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 E++H+ L+ L P + D +P V+LVVGVNG GKTT GKL++ + G Sbjct: 162 AREVLHRELVGLVGPDMDRSISLDHQEGKPAVVLVVGVNGTGKTTTCGKLARVLVAEGKT 221 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 V+L A DTFR+AA +QL+ W +R + + G+D A++AYEA + + VDV+++DT Sbjct: 222 VLLGAADTFRAAAGEQLETWGERVGVRTIRKDEGADPASVAYEAVQAGVDEGVDVVLVDT 281 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AGRLH + LM +GK+ RV+++L P + VL VLDATTGQN L Q +F V TG+ Sbjct: 282 AGRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLAQARIFSEVVDVTGI 339 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 +++K+DG+A+GG ++ + +PV +G+GEG +DL PF A DF +TG + Sbjct: 340 VLSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADDF---VTGLM 389 >gi|325518808|gb|EGC98389.1| signal recognition particle-docking protein FtsY [Burkholderia sp. TJI49] Length = 213 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 99/203 (48%), Positives = 136/203 (66%), Gaps = 1/203 (0%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P V+++ GVNG GKTT IGKL+K + V+LAAGDTFR+AA +QL +W +R + Sbjct: 12 QPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLTVWGERNNVTV 71 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V E G D AA+ ++A A+A+K+DV++ DTAGRL LM + K+ RV+ + A Sbjct: 72 VQQESG-DPAAVIFDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGA 130 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH VL V+DA TGQN L QV+ F G TGLI+TK+DGTA+GG L I +PVYF+ Sbjct: 131 PHEVLLVIDANTGQNGLTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFI 190 Query: 290 GVGEGINDLEPFVAKDFSAVITG 312 GVGE + DL+PF A++F+ + G Sbjct: 191 GVGEKVEDLQPFSAEEFADALLG 213 >gi|83319748|ref|YP_424455.1| signal recognition particle-docking protein FtsY [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283634|gb|ABC01566.1| signal recognition particle-docking protein FtsY [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 424 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 105/271 (38%), Positives = 170/271 (62%), Gaps = 9/271 (3%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 ++ DD EELED+LI++D+G+ + K V L+ K+ +D S + + + E +++ Sbjct: 134 KQADDEFFEELEDVLIQTDMGMKMVLK-VSNLVRKKTKRDTSFENIKDALVESLYQAYTD 192 Query: 99 ---LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 +K + DF +R +V ++VGVNG GKTT + K++ ++ G KV++AA DTFR+ A Sbjct: 193 NDWTNKKYRIDFKENRLNVFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGA 252 Query: 155 IDQLKIWAD---RTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 QL+ W D V +++ +D A++ ++A K+A+ + D+L+IDTAGRL N Sbjct: 253 TQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKVN 312 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LMA + KM +++++++ APH VL V+DATTGQN + Q E F VA +G+I+TKMD T+ Sbjct: 313 LMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTS 372 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +GG + I IP+ +GVGE ++DL F Sbjct: 373 KGGIGLAIKELLNIPIKMIGVGEKVDDLLAF 403 >gi|327389479|gb|EGE87824.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae GA04375] Length = 401 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 107/257 (41%), Positives = 153/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K ++D F Sbjct: 138 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 195 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R Sbjct: 196 NLTVMLFVGVNGVGKTTSIGKLAHRYKRTGKKVMLVAADTFRTGAVAQLAEWGRRVDVPV 255 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 256 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 315 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 316 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 375 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 376 GFGEKIDDIGEFNSENF 392 >gi|148998676|ref|ZP_01826115.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae SP11-BS70] gi|147755513|gb|EDK62561.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae SP11-BS70] Length = 425 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 108/257 (42%), Positives = 153/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K ++D F Sbjct: 162 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 219 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ AG KVML A DTFR+ A+ QL W R Sbjct: 220 NLTVMLFVGVNGVGKTTSIGKLAHCYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 279 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 280 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 339 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 340 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 399 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 400 GFGEKIDDIGEFNSENF 416 >gi|225453710|ref|XP_002269433.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296089055|emb|CBI38758.3| unnamed protein product [Vitis vinifera] Length = 367 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 123/317 (38%), Positives = 185/317 (58%), Gaps = 20/317 (6%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVR--EELEDLLIRSDIGVAVA 63 + ++ S + KL GF+ T L I +++ L D R +ELE+ L+ SD G + Sbjct: 57 IKEKTKSDVEKLFSGFSKTRDNLAV-IDELLLYWNLADTDRVLDELEEALLVSDFGPRIT 115 Query: 64 QKIVEELLTKRYA---------KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114 KIVE L A KD + VL +++ K + L +P V+ Sbjct: 116 IKIVESLRDDILAGKLKSGSEIKDALKKSVLDLLTKKGSKTALQLG-------FRKPAVV 168 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE- 173 ++VGVNG GKTT +GKL+ K+ G KV++AAGDTFR+AA DQL+IWA+RT + V +E Sbjct: 169 IIVGVNGGGKTTSLGKLAYKLKKEGAKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEG 228 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 + A+++ +A K+ + + D+++ DT+GRLH N LM + + + ++ AP+ + Sbjct: 229 EKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELIACKKAVGKVVSGAPNEI 288 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L VLD TTG N L Q F+ V G +GLI+TK+DG+ARGG ++ +V IPV F+GVGE Sbjct: 289 LLVLDGTTGLNMLPQAREFNEVVGISGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGE 348 Query: 294 GINDLEPFVAKDFSAVI 310 G+ DL+PF A+ F I Sbjct: 349 GVEDLQPFDAEVFVNAI 365 >gi|319776794|ref|YP_004136445.1| cell division protein ftsy [Mycoplasma fermentans M64] gi|318037869|gb|ADV34068.1| Cell division protein FtsY [Mycoplasma fermentans M64] Length = 355 Score = 191 bits (486), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 107/276 (38%), Positives = 164/276 (59%), Gaps = 12/276 (4%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 + +++ +ELE++LI SDI + I+ + + A+ + + D+ EL+ + Sbjct: 72 KEINEEFFDELEEILIMSDINAKLVYAIITHIKNEVRARGLKDTK---DIGELVADQMFV 128 Query: 99 L-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 + N+ R ++ + VGVNG GKTT I K++ K G KV++AAGDTFR Sbjct: 129 VYTNKSIVDTTLNYQ-DGRLNIFIFVGVNGSGKTTSIAKIAYKYIKEGKKVLIAAGDTFR 187 Query: 152 SAAIDQLKIWADRTSADFVCS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 + A+DQL +WA+R A V + G D +++ YEA ++AQ +K D+L+IDTAGRL N Sbjct: 188 AGAVDQLGVWAERVGAPIVKPVKEGVDPSSVVYEALEKAQNEKYDLLLIDTAGRLQNKVN 247 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + KM ++ R APH L VLDATTGQN + Q F VA TG+I+TKMDGT+ Sbjct: 248 LMKELEKMYGIIARFQDKAPHECLLVLDATTGQNGVSQARSFKEVAAPTGIILTKMDGTS 307 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +GG ++ I + V ++G+GEG++DL+ F +F Sbjct: 308 KGGIVLSIKDEFDLNVKYIGLGEGLDDLQEFDLDNF 343 >gi|289423971|ref|ZP_06425763.1| signal recognition particle-docking protein FtsY [Peptostreptococcus anaerobius 653-L] gi|289155607|gb|EFD04280.1| signal recognition particle-docking protein FtsY [Peptostreptococcus anaerobius 653-L] Length = 364 Score = 191 bits (486), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 129/301 (42%), Positives = 190/301 (63%), Gaps = 8/301 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71 +L +G + T + + DI++S ++D+ + EELE++LI +D+G+ I+++L + Sbjct: 68 RLMEGLSKTKSNIMGRVDDILNSYTKIDEDLLEELEEVLITADVGLTTTMDIIDQLRVMI 127 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 KR D R L + E+I +L + D S P VI++VGVNGVGKTT IGKL Sbjct: 128 KKRGVTDPLEVRDL--LKEIISNILTEGNPKIEIDPS--PAVIVMVGVNGVGKTTTIGKL 183 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K G KVMLAA DTFR+AA +QL IWA R D + G+D A+ ++A K +Q+ Sbjct: 184 AQKYKKDGKKVMLAAADTFRAAATEQLDIWATRVGVDIIKHHEGADPGAVIFDAIKASQS 243 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +KVD+LI DTAGRLHN + LM +GK+ +++ R P A VL V+DATTGQNA+ Q + Sbjct: 244 RKVDLLICDTAGRLHNKANLMNELGKIFKIIDREYPEAKKEVLLVVDATTGQNAVSQAKT 303 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F VA TG+++TK+DGTA+GG ++ + +PV +GVGE DL+ F A+ F+ I Sbjct: 304 FKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGEKAEDLQVFDAQSFTDAIF 363 Query: 312 G 312 G Sbjct: 364 G 364 >gi|50842926|ref|YP_056153.1| signal recognition particle receptor [Propionibacterium acnes KPA171202] gi|289426529|ref|ZP_06428272.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes SK187] gi|289427788|ref|ZP_06429499.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes J165] gi|295130983|ref|YP_003581646.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes SK137] gi|50840528|gb|AAT83195.1| signal recognition particle receptor [Propionibacterium acnes KPA171202] gi|289153257|gb|EFD01975.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes SK187] gi|289159052|gb|EFD07245.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes J165] gi|291375171|gb|ADD99025.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes SK137] gi|313763655|gb|EFS35019.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL013PA1] gi|313773593|gb|EFS39559.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL074PA1] gi|313794049|gb|EFS42073.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL110PA1] gi|313801436|gb|EFS42687.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL110PA2] gi|313807884|gb|EFS46365.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL087PA2] gi|313811645|gb|EFS49359.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL083PA1] gi|313816832|gb|EFS54546.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL059PA1] gi|313822225|gb|EFS59939.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL036PA1] gi|313823542|gb|EFS61256.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL036PA2] gi|313825869|gb|EFS63583.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL063PA1] gi|313829549|gb|EFS67263.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL063PA2] gi|313831386|gb|EFS69100.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL007PA1] gi|313834998|gb|EFS72712.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL056PA1] gi|313839844|gb|EFS77558.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL086PA1] gi|314914657|gb|EFS78488.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL005PA4] gi|314919230|gb|EFS83061.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL050PA1] gi|314920860|gb|EFS84691.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL050PA3] gi|314924619|gb|EFS88450.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL036PA3] gi|314954302|gb|EFS98708.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL027PA1] gi|314957419|gb|EFT01522.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL002PA1] gi|314963597|gb|EFT07697.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL082PA1] gi|314968571|gb|EFT12669.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL037PA1] gi|314974261|gb|EFT18357.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL053PA1] gi|314976734|gb|EFT20829.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL045PA1] gi|314978888|gb|EFT22982.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL072PA2] gi|314984436|gb|EFT28528.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL005PA1] gi|315079451|gb|EFT51444.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL053PA2] gi|315083523|gb|EFT55499.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL027PA2] gi|315089377|gb|EFT61353.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL072PA1] gi|315095401|gb|EFT67377.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL038PA1] gi|315099282|gb|EFT71258.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL059PA2] gi|315100484|gb|EFT72460.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL046PA1] gi|315106738|gb|EFT78714.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL030PA1] gi|315109081|gb|EFT81057.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL030PA2] gi|327328338|gb|EGE70100.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL096PA2] gi|327329797|gb|EGE71553.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL096PA3] gi|327444122|gb|EGE90776.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL043PA2] gi|327444999|gb|EGE91653.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL043PA1] gi|327446482|gb|EGE93136.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL013PA2] gi|327451932|gb|EGE98586.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL092PA1] gi|327455033|gb|EGF01688.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL087PA3] gi|327457679|gb|EGF04334.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL083PA2] gi|328752238|gb|EGF65854.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL020PA1] gi|328755135|gb|EGF68751.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL087PA1] gi|328758087|gb|EGF71703.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL025PA2] gi|328760089|gb|EGF73668.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL099PA1] gi|332675863|gb|AEE72679.1| cell division protein FtsY [Propionibacterium acnes 266] Length = 396 Score = 191 bits (486), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 115/292 (39%), Positives = 181/292 (61%), Gaps = 12/292 (4%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQR 83 L G+ +++S+ +LDD ++ E LI SD+GV ++VE+L ++ +S + Sbjct: 105 LARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDPAHARE 164 Query: 84 VLYDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 VL+ EL+ + + + N D +P V+L+VGVNG GKTT GKL++ + G V Sbjct: 165 VLH--HELVELVGSDMDRSINLDRLEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEGKTV 222 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +L A DTFR+AA +QL+ W +R V + G+D A++AYEA + + VDV+++DTA Sbjct: 223 LLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQTGIDEGVDVVLVDTA 282 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRLH + LM +GK+ RV+++L P + VL VLDATTGQN L Q +F V TG++ Sbjct: 283 GRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLAQARVFSEVVDVTGIV 340 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 ++K+DG+A+GG ++ + +PV +G+GEG +DL PF A +F +TG + Sbjct: 341 LSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNF---VTGLM 389 >gi|322376799|ref|ZP_08051292.1| signal recognition particle-docking protein FtsY [Streptococcus sp. M334] gi|321282606|gb|EFX59613.1| signal recognition particle-docking protein FtsY [Streptococcus sp. M334] Length = 420 Score = 191 bits (486), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 108/257 (42%), Positives = 153/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K N+D F Sbjct: 157 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDESIHFQD 214 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 215 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 274 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ A Sbjct: 275 VTGAEKADPASVVFDGMERAVAESIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVSEA 334 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 335 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 394 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 395 GFGEKIDDIGEFNSENF 411 >gi|257784653|ref|YP_003179870.1| signal recognition particle-docking protein FtsY [Atopobium parvulum DSM 20469] gi|257473160|gb|ACV51279.1| signal recognition particle-docking protein FtsY [Atopobium parvulum DSM 20469] Length = 301 Score = 191 bits (486), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 96/266 (36%), Positives = 162/266 (60%), Gaps = 2/266 (0%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 ++LED L+ D+G VA ++ ++L + ++++ L L+ ++ Sbjct: 34 DDLEDTLVMGDMGAEVAMRVTDDLRERAARENLTRSDQLR--RALVERLTAEFPVAKRDP 91 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 F+ P ++L VG+NG GKTT +GK++ + +G+K ++ DTFR+AAI+QL++W +R+ Sbjct: 92 FTDTPSIVLFVGINGAGKTTTVGKIAGRAHASGVKTLIGGADTFRAAAIEQLQVWGERSG 151 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V E G+D A++ +E + A + ++++IDTAGRLH +S LM + K++ V ++ Sbjct: 152 IEVVTRERGADPASVCFEVVETAAKQGTELVLIDTAGRLHTSSDLMRELAKVVSVTRKRA 211 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P SV+ V+DATTGQN L Q + F+ GLI+TK+DGTA+GG + I +P+ Sbjct: 212 GDIPVSVVLVIDATTGQNGLNQAKEFNDALSLDGLIVTKLDGTAKGGIALAISNQLNLPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITG 312 Y +GVGE I+DL+ F A+ F + G Sbjct: 272 YRIGVGESIDDLQTFDARSFCEALVG 297 >gi|257465874|ref|ZP_05630185.1| Signal recognition particle receptor FtsY [Fusobacterium gonidiaformans ATCC 25563] Length = 334 Score = 191 bits (486), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 107/257 (41%), Positives = 157/257 (61%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113 I+SDIG+ + +KIV +L ++V +Y V + + + + S+ + V Sbjct: 76 IQSDIGLEMTEKIVTDLEKAVKKQEVQNPEEVYPVLKTVMEEYLIESEEEFPKEENELQV 135 Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 IL+VGVNGVGKTT IGK++ K+ G KV+L AGDTFR+AA++QL+ WA R+ A+ V + Sbjct: 136 ILIVGVNGVGKTTTIGKIAAKLKKEGKKVVLGAGDTFRAAAVEQLEEWAKRSEAEIVKGK 195 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 G+D ++ ++ +A+ DV IIDTAGRLHN + LM + K+ V+++ + Sbjct: 196 EGADPGSVVFDTLTKAEELGADVAIIDTAGRLHNKAYLMKELEKINNVVRKKIGERHYES 255 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L V+D TTGQNAL Q F+ V TG I+TK+DGTA+GG + + K P+ F+GVGE Sbjct: 256 LLVIDGTTGQNALNQAREFNEVTHLTGFIITKLDGTAKGGIVFSLSELLKKPIRFIGVGE 315 Query: 294 GINDLEPFVAKDFSAVI 310 I DL F KDF A + Sbjct: 316 KIEDLRKFSKKDFIAAL 332 >gi|225860923|ref|YP_002742432.1| cell division protein FtsY [Streptococcus pneumoniae Taiwan19F-14] gi|298229962|ref|ZP_06963643.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254347|ref|ZP_06977933.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502759|ref|YP_003724699.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae TCH8431/19A] gi|225726484|gb|ACO22335.1| cell division protein FtsY [Streptococcus pneumoniae Taiwan19F-14] gi|298238354|gb|ADI69485.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae TCH8431/19A] Length = 429 Score = 191 bits (486), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 107/257 (41%), Positives = 153/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K ++D F Sbjct: 166 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 223 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R Sbjct: 224 NLTVMLFVGVNGVGKTTSIGKLAHRYKRTGKKVMLVAADTFRTGAVAQLAEWGRRVDVPV 283 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 284 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 343 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 344 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 403 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 404 GFGEKIDDIGEFNSENF 420 >gi|315917031|ref|ZP_07913271.1| cell division protein ftsY [Fusobacterium gonidiaformans ATCC 25563] gi|313690906|gb|EFS27741.1| cell division protein ftsY [Fusobacterium gonidiaformans ATCC 25563] Length = 337 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 107/257 (41%), Positives = 157/257 (61%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113 I+SDIG+ + +KIV +L ++V +Y V + + + + S+ + V Sbjct: 79 IQSDIGLEMTEKIVTDLEKAVKKQEVQNPEEVYPVLKTVMEEYLIESEEEFPKEENELQV 138 Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 IL+VGVNGVGKTT IGK++ K+ G KV+L AGDTFR+AA++QL+ WA R+ A+ V + Sbjct: 139 ILIVGVNGVGKTTTIGKIAAKLKKEGKKVVLGAGDTFRAAAVEQLEEWAKRSEAEIVKGK 198 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 G+D ++ ++ +A+ DV IIDTAGRLHN + LM + K+ V+++ + Sbjct: 199 EGADPGSVVFDTLTKAEELGADVAIIDTAGRLHNKAYLMKELEKINNVVRKKIGERHYES 258 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L V+D TTGQNAL Q F+ V TG I+TK+DGTA+GG + + K P+ F+GVGE Sbjct: 259 LLVIDGTTGQNALNQAREFNEVTHLTGFIITKLDGTAKGGIVFSLSELLKKPIRFIGVGE 318 Query: 294 GINDLEPFVAKDFSAVI 310 I DL F KDF A + Sbjct: 319 KIEDLRKFSKKDFIAAL 335 >gi|166031775|ref|ZP_02234604.1| hypothetical protein DORFOR_01476 [Dorea formicigenerans ATCC 27755] gi|166028228|gb|EDR46985.1| hypothetical protein DORFOR_01476 [Dorea formicigenerans ATCC 27755] Length = 361 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 131/309 (42%), Positives = 189/309 (61%), Gaps = 10/309 (3%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61 ++ +A E + R+L G T + G+ I + +D+ EELE++LI D+GV Sbjct: 44 SKSMAEEKKGFFRRLVDGLTKTRDNIVSGMDSIFNGFTHIDEDFYEELEEVLIMGDLGVQ 103 Query: 62 ----VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117 + K+ E++ T+ + V +++L D K M + + ++F R V++V+ Sbjct: 104 ATYDILDKLREKVKTQHIKEPVECRQILIDSI----KEQMDVGEA-AYEFEERTSVVMVI 158 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 GVNGVGKTT IGKL+ K+ KV+LAA DTFR+AA +QLK WA+R A+ + + GSD Sbjct: 159 GVNGVGKTTTIGKLAGKLRSQNKKVVLAAADTFRAAAGEQLKEWANRAQAELIGGQEGSD 218 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 AA+ Y+A A+A+ DVL+IDTAGRLHN LM + KM +++ R P A L VL Sbjct: 219 PAAVVYDAVAAAKARHADVLLIDTAGRLHNKKNLMEELRKMNKIIDREFPDAYRETLVVL 278 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DATTGQNAL Q + F+ VA TG+I+TKMDGTA+GG + I IPV ++GVGE I+D Sbjct: 279 DATTGQNALAQAKEFNEVADITGVILTKMDGTAKGGIAVAIQAELGIPVKYIGVGETIDD 338 Query: 298 LEPFVAKDF 306 L+ F + F Sbjct: 339 LQKFNSDTF 347 >gi|170017641|ref|YP_001728560.1| Signal recognition particle-docking protein FtsY [Leuconostoc citreum KM20] gi|169804498|gb|ACA83116.1| Signal recognition particle-docking protein FtsY [Leuconostoc citreum KM20] Length = 400 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 110/261 (42%), Positives = 156/261 (59%), Gaps = 10/261 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112 L+ +D+G +A KI +EL R + + DV ++I K ++ L + D H Sbjct: 133 LVGADVGFDMAIKISDEL---REEVKLENAKRKEDVRDVIIKKMVDLYEADGVDEDATMH 189 Query: 113 -------VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 VIL VGVNGVGKTT IGKL+ K G V+LAA DTFR+ A QL+ W +R Sbjct: 190 FNANGTTVILFVGVNGVGKTTTIGKLATKYRQQGKSVLLAAADTFRAGATKQLQEWGERA 249 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 V + +D A++ +EA +A+ + D+L +DTAGRL NN LM + KM R+++R Sbjct: 250 GVPVVAGKEKADPASVVFEAVAKARDEHYDILFVDTAGRLQNNVNLMQELEKMKRIIQRE 309 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P APH VL VLDATTGQNAL+Q ++F + TG+++TKMDGTA+GG + I +P Sbjct: 310 IPDAPHEVLLVLDATTGQNALQQAKLFKDSSDVTGIVLTKMDGTAKGGIVFAIRSEMHLP 369 Query: 286 VYFLGVGEGINDLEPFVAKDF 306 V ++G GE +DL F ++F Sbjct: 370 VKWIGFGEKASDLRVFKPEEF 390 >gi|256851298|ref|ZP_05556687.1| signal recognition particle-docking protein FtsY [Lactobacillus jensenii 27-2-CHN] gi|260660722|ref|ZP_05861637.1| signal recognition particle-docking protein FtsY [Lactobacillus jensenii 115-3-CHN] gi|282933257|ref|ZP_06338644.1| FtsY-like protein [Lactobacillus jensenii 208-1] gi|297206167|ref|ZP_06923562.1| cell division protein FtsY [Lactobacillus jensenii JV-V16] gi|256616360|gb|EEU21548.1| signal recognition particle-docking protein FtsY [Lactobacillus jensenii 27-2-CHN] gi|260548444|gb|EEX24419.1| signal recognition particle-docking protein FtsY [Lactobacillus jensenii 115-3-CHN] gi|281302761|gb|EFA94976.1| FtsY-like protein [Lactobacillus jensenii 208-1] gi|297149293|gb|EFH29591.1| cell division protein FtsY [Lactobacillus jensenii JV-V16] Length = 434 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 107/276 (38%), Positives = 166/276 (60%), Gaps = 10/276 (3%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R +D+ +ELEDLLI SD+G ++++VE+L K AK + + ++ +LI + L+ Sbjct: 154 RSVDEDFFDELEDLLIESDVGFETSEELVEQL--KDEAK-LQNAKSHDELKKLIVQKLVD 210 Query: 99 L------SKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 + S+ ++ + +V L VGVNG GKTT IGKL+++ + G KV+L A DTFR Sbjct: 211 IYDQNGDSEAEKLTYNDGKTNVYLFVGVNGAGKTTTIGKLAQRFKNQGKKVVLVAADTFR 270 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 + A++QLK W RT + V + +D A++ Y+ K +K D +++DTAGRL N L Sbjct: 271 AGAVEQLKEWGRRTETEVVTGPVQADPASVVYDGVKHGLEEKADYVLVDTAGRLQNKQNL 330 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M + K+ R +K+L P P L VLD +TGQNAL Q + F TGL++TK+DG+++ Sbjct: 331 MKELEKIERTIKKLLPEEPSETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSK 390 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 GG ++ I K+PV +G+GE DL F A ++ Sbjct: 391 GGVILAIRNEMKLPVKLVGLGEKAEDLADFDAASYA 426 >gi|148985139|ref|ZP_01818378.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae SP3-BS71] gi|147922584|gb|EDK73702.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae SP3-BS71] gi|301800164|emb|CBW32769.1| putative signal recognition particle 54 FtsY [Streptococcus pneumoniae OXC141] Length = 429 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 107/257 (41%), Positives = 153/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K ++D F Sbjct: 166 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 223 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R Sbjct: 224 NLTVMLFVGVNGVGKTTSIGKLAHRYKRTGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 283 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 284 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 343 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 344 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 403 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 404 GFGEKIDDIGEFNSENF 420 >gi|317057722|ref|YP_004106189.1| signal recognition particle-docking protein FtsY [Ruminococcus albus 7] gi|315449991|gb|ADU23555.1| signal recognition particle-docking protein FtsY [Ruminococcus albus 7] Length = 301 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 112/251 (44%), Positives = 162/251 (64%), Gaps = 2/251 (0%) Query: 56 SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115 SDIGV + KI +++ K ++ + D+ + + ++ +P D S P VIL Sbjct: 47 SDIGVNTSVKICDKVRDYVKQKGITDPTQIKDILKDVIAEMLGEEQPL--DMSTVPSVIL 104 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 V+GVNGVGKTT IGKL+ ++ + G V++AA DTFR+AAIDQL++W DR + + + G Sbjct: 105 VIGVNGVGKTTTIGKLANQLKNQGKHVIVAAADTFRAAAIDQLEVWTDRAGVELIKHKEG 164 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+ ++A A+A+ DV+I DTAGRLHN LM + K+ R++ + VL Sbjct: 165 SDPAAVVFDALTAAKARNADVVICDTAGRLHNKKNLMKELEKISRIVHQQAEGCALEVLL 224 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 LDATTGQNA+ Q + F+ A TG+I+TK+DGTA+GG +I I KIPV + VGE I Sbjct: 225 ALDATTGQNAVNQAQQFNEAADITGIILTKLDGTAKGGIVITICDDLKIPVKLVTVGEKI 284 Query: 296 NDLEPFVAKDF 306 +D++PF+AKDF Sbjct: 285 DDIQPFIAKDF 295 >gi|149194174|ref|ZP_01871272.1| Cell division transporter substrate-binding protein FtsY [Caminibacter mediatlanticus TB-2] gi|149136127|gb|EDM24605.1| Cell division transporter substrate-binding protein FtsY [Caminibacter mediatlanticus TB-2] Length = 290 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 102/287 (35%), Positives = 169/287 (58%), Gaps = 13/287 (4%) Query: 21 FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80 F K KE + ++ + + + +E +E+ L+ +D+ + +KIV +L +KD Sbjct: 5 FKKALNKTKEALQTVVGTEKKEKLSKEIIEEALLEADMDYDLVEKIVSKL-PDEVSKD-- 61 Query: 81 VQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139 +L ++L P N + + +P+V L++GVNG GKTT I KL+ K G Sbjct: 62 ---------KLRKEILWYFDTPNNKIEINDKPYVFLIIGVNGAGKTTTIAKLAHKFKKEG 112 Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199 V+L A DTFR+AAI+QL WA+ + + ++ G D AA+ Y+ A+AK +D+ +I Sbjct: 113 KSVILGAADTFRAAAIEQLSKWAEIVNVPIIKTKHGHDPAAVTYDTIASAKAKGIDIALI 172 Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 DTAGRLHN L + K++ V K+ +APH V+ ++D T G +A+ Q ++F + G Sbjct: 173 DTAGRLHNKINLQNELKKIVNVAKKAYENAPHKVILIIDGTQGSSAINQAKVFKEIIGAD 232 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G+I+TK+DGTA+GG + I ++P+Y++GVGE ++DL F ++F Sbjct: 233 GVIITKLDGTAKGGSVFTIANELRLPIYYIGVGEKLDDLVEFNKEEF 279 >gi|168493165|ref|ZP_02717308.1| cell division protein FtsY [Streptococcus pneumoniae CDC3059-06] gi|183576736|gb|EDT97264.1| cell division protein FtsY [Streptococcus pneumoniae CDC3059-06] Length = 429 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 107/257 (41%), Positives = 153/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K ++D F Sbjct: 166 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 223 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R Sbjct: 224 NLTVMLFVGVNGVGKTTSIGKLAHRYKRTGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 283 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 284 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 343 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 344 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 403 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 404 GFGEKIDDIGEFNSENF 420 >gi|251781993|ref|YP_002996295.1| putative cell division protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390622|dbj|BAH81081.1| putative cell division protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 516 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 109/260 (41%), Positives = 158/260 (60%), Gaps = 8/260 (3%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFS 108 +LI SD+GV VA + EEL RY + + + +I + L+ + + +N + Sbjct: 251 MLILSDVGVHVATTLTEEL---RYEAKLENAKKPDALKRVIVEKLVDIYEKDGRYNEAIN 307 Query: 109 HRP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 ++ V+L VGVNGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R Sbjct: 308 YQDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVD 367 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + +D A++ ++ ++A A+ D+L+IDTAGRL N LMA + KM R++KR+ Sbjct: 368 VPVITGPEKADPASVVFDGVEKAVAEGADILLIDTAGRLQNKENLMAELEKMGRIIKRVI 427 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH L LDA+TGQNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV Sbjct: 428 PDAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPV 487 Query: 287 YFLGVGEGINDLEPFVAKDF 306 F+G GE ++D+ F ++DF Sbjct: 488 KFIGFGEKMDDIGEFHSEDF 507 >gi|313819669|gb|EFS57383.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL046PA2] gi|314962017|gb|EFT06118.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL002PA2] gi|315087203|gb|EFT59179.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL002PA3] Length = 396 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 115/292 (39%), Positives = 181/292 (61%), Gaps = 12/292 (4%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQR 83 L G+ +++S+ +LDD ++ E LI SD+GV ++VE+L ++ +S + Sbjct: 105 LARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDPAHARE 164 Query: 84 VLYDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 VL+ EL+ + + + N D +P V+L+VGVNG GKTT GKL++ + G V Sbjct: 165 VLH--HELVELVGSDMDRSINLDRLEGKPAVVLMVGVNGTGKTTTCGKLARVLIAEGKTV 222 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +L A DTFR+AA +QL+ W +R V + G+D A++AYEA + + VDV+++DTA Sbjct: 223 LLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQTGIDEGVDVVLVDTA 282 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRLH + LM +GK+ RV+++L P + VL VLDATTGQN L Q +F V TG++ Sbjct: 283 GRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLAQARVFSEVVDVTGIV 340 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 ++K+DG+A+GG ++ + +PV +G+GEG +DL PF A +F +TG + Sbjct: 341 LSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNF---VTGLM 389 >gi|332203092|gb|EGJ17160.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae GA47901] Length = 406 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 107/257 (41%), Positives = 153/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K ++D F Sbjct: 143 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 200 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + AG KVML A DTFR+ A+ QL W R Sbjct: 201 NLTVMLFVGVNGVGKTTSIGKLAHRYKRAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 260 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LM + K+ R++KR+ P A Sbjct: 261 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMTELEKIGRIIKRVVPEA 320 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 321 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 380 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 381 GFGEKIDDIGEFNSENF 397 >gi|313124068|ref|YP_004034327.1| signal recognition particle-docking protein ftsy [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280631|gb|ADQ61350.1| Signal recognition particle-docking protein FtsY [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325685923|gb|EGD27988.1| cell division protein FtsY [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 423 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 102/274 (37%), Positives = 165/274 (60%), Gaps = 5/274 (1%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIH 93 R +D+ ++LE+LLI SD+G ++++ ++L L K ++D + ++ + E+ Sbjct: 142 RTVDEDFFDDLEELLIESDVGYETSEELTDQLREEAKLQKAKSRDDLKRVIVQKLVEVYD 201 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 + ++ +D + +P+V L VGVNG GKTT +GKL+K+ D G KV+L A DTFR+ Sbjct: 202 ENANSENEKLAYDPNAKPNVYLFVGVNGAGKTTTVGKLAKRFHDQGKKVLLVAADTFRAG 261 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A++QL W RT V +D AA+ Y+ ++A A++ D L++DTAGRL N LM Sbjct: 262 AVEQLVEWGKRTGVPVVTGPDKADPAAVVYDGLERAIAEEADYLLVDTAGRLQNKVNLMN 321 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + K+ R +K+ P P L VLD +TGQNAL Q + F +GL++TK+DG+++GG Sbjct: 322 ELEKIQRTIKKRLPDQPAETLLVLDGSTGQNALLQAKDFDKTTKLSGLVLTKLDGSSKGG 381 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 ++ I K+PV +G+GE DL F A +++ Sbjct: 382 VVLSIRHEMKLPVKLVGLGEKAEDLADFDAANYA 415 >gi|148993853|ref|ZP_01823255.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae SP9-BS68] gi|168489071|ref|ZP_02713270.1| cell division protein FtsY [Streptococcus pneumoniae SP195] gi|147927678|gb|EDK78703.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae SP9-BS68] gi|183572532|gb|EDT93060.1| cell division protein FtsY [Streptococcus pneumoniae SP195] Length = 406 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 107/257 (41%), Positives = 153/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K ++D F Sbjct: 143 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 200 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R Sbjct: 201 NLTVMLFVGVNGVGKTTSIGKLAHRYKRTGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 260 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 261 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 320 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 321 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 380 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 381 GFGEKIDDIGEFNSENF 397 >gi|302338435|ref|YP_003803641.1| signal recognition particle-docking protein FtsY [Spirochaeta smaragdinae DSM 11293] gi|301635620|gb|ADK81047.1| signal recognition particle-docking protein FtsY [Spirochaeta smaragdinae DSM 11293] Length = 291 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 107/268 (39%), Positives = 160/268 (59%), Gaps = 6/268 (2%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100 LD+ +ELED LI SD+G A +V+ L + A+ + +L + + + L+P + Sbjct: 20 LDEAFYDELEDTLIESDLGARTAMDLVDSLRDSKEARGMGESEIL----DYLKRQLLPYT 75 Query: 101 KPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQL 158 K DF + +ILV+GVNGVGKTT I K+++ DA G +LAAGDTFR+AAIDQL Sbjct: 76 KAAKLDFRDKKRALILVLGVNGVGKTTTIAKMARYFHDAQGKSCVLAAGDTFRAAAIDQL 135 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 + +R V + G+D A+ Y+A + A ++ ++++ DTAGR+HN + L+ + K+ Sbjct: 136 LVHGERLGVRVVHQQPGADPGAVIYDALESAVSRGEELVLADTAGRMHNKANLIRELQKI 195 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +++ + L V+D TTGQNALRQ E+FH G L+M K D A+GG +IPI Sbjct: 196 HKIVGAKIGTENYCKLLVIDTTTGQNALRQAELFHEAVGVDALVMAKYDSAAKGGIIIPI 255 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDF 306 T IPV F+G GEG DL F ++ + Sbjct: 256 QRTLSIPVAFVGTGEGYGDLALFDSESY 283 >gi|332073582|gb|EGI84061.1| signal recognition particle-docking protein FtsY [Streptococcus pneumoniae GA17570] Length = 378 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 107/257 (41%), Positives = 153/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K ++D F Sbjct: 115 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 172 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R Sbjct: 173 NLTVMLFVGVNGVGKTTSIGKLAHRYKRTGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 232 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 233 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 292 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 293 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 352 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 353 GFGEKIDDIGEFNSENF 369 >gi|328794005|ref|XP_003251960.1| PREDICTED: putative methylthiotransferase RP416-like, partial [Apis mellifera] Length = 447 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 89/199 (44%), Positives = 135/199 (67%) Query: 19 KGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78 +G + ++ KL +T + + RRLDD E+LED+LI +D G VA+ ++E R+ + Sbjct: 243 RGLSRSTQKLGNNLTSVFTKRRLDDESLEQLEDILISADFGPEVAENVIESFRKTRFGSE 302 Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138 V+ Q + ++E I K+L P++ PF + +PHV+L+VGVNG GKTT IGK+ + +D Sbjct: 303 VTDQEIKQALAEEISKILKPVAVPFQPNPDLKPHVVLMVGVNGTGKTTTIGKMGQFFTDQ 362 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 GLKVM+ AGDTFR+AA++QL++W DR + + +DAA LA+EA K+A+ ++ D+L+ Sbjct: 363 GLKVMMVAGDTFRAAAVEQLQVWGDRVGVSVISGKPQADAAGLAFEALKRAKNEQTDLLL 422 Query: 199 IDTAGRLHNNSILMAGIGK 217 IDTAGRLHN S LM + K Sbjct: 423 IDTAGRLHNKSALMEELAK 441 >gi|255037358|ref|YP_003087979.1| signal recognition particle-docking protein FtsY [Dyadobacter fermentans DSM 18053] gi|254950114|gb|ACT94814.1| signal recognition particle-docking protein FtsY [Dyadobacter fermentans DSM 18053] Length = 320 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 117/278 (42%), Positives = 171/278 (61%), Gaps = 6/278 (2%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVA----VAQKIVEELLTKRYAKDVSVQRVLYD--V 88 I+ +D+ V +ELED+L+ SD+GV V ++I E + +YA + +L + Sbjct: 34 IVGKTTIDEDVLDELEDILVSSDVGVETTVKVIKRIEERVARDKYASTAELDSILREEIA 93 Query: 89 SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 + L + + F + +P V++VVGVNGVGKTT IGKL+ + G KV+L A D Sbjct: 94 ALLTENKSVDIRDSFETEHLPKPFVMMVVGVNGVGKTTTIGKLAHQFHQRGHKVVLGAAD 153 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+AA+DQLK+W R + + + +D +A+AY+A K+ DV+IIDTAGRLH Sbjct: 154 TFRAAAVDQLKLWGQRVNVPVIDHGMNTDPSAVAYDAIKKGVESNADVIIIDTAGRLHTK 213 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM + K+ RV++++ P APH VL VLD +TGQNA+ Q F V T L +TK+DG Sbjct: 214 VNLMNELSKIKRVMQKILPDAPHEVLLVLDGSTGQNAVIQAREFTKVTDITALAITKLDG 273 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TA+GG +I I KIPV ++GVGE ++DL+ F +F Sbjct: 274 TAKGGVVIGISDEFKIPVKYIGVGEKMDDLQVFDRAEF 311 >gi|104774251|ref|YP_619231.1| Signal recognition particle-docking protein FtsY [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514341|ref|YP_813247.1| Signal recognition particle GTPase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423332|emb|CAI98179.1| Signal recognition particle-docking protein FtsY [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093656|gb|ABJ58809.1| signal recognition particle-docking protein FtsY [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325126039|gb|ADY85369.1| Cell division protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 442 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 102/274 (37%), Positives = 165/274 (60%), Gaps = 5/274 (1%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIH 93 R +D+ ++LE+LLI SD+G ++++ ++L L K ++D + ++ + E+ Sbjct: 161 RTVDEDFFDDLEELLIESDVGYETSEELTDQLREEAKLQKAKSRDDLKRVIVQKLVEVYD 220 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 + ++ +D + +P+V L VGVNG GKTT +GKL+K+ D G KV+L A DTFR+ Sbjct: 221 ENANSENEKLAYDPNAKPNVYLFVGVNGAGKTTTVGKLAKRFHDQGKKVLLVAADTFRAG 280 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A++QL W RT V +D AA+ Y+ ++A A++ D L++DTAGRL N LM Sbjct: 281 AVEQLVEWGKRTGVPVVTGPDKADPAAVVYDGLERAIAEEADYLLVDTAGRLQNKVNLMN 340 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + K+ R +K+ P P L VLD +TGQNAL Q + F +GL++TK+DG+++GG Sbjct: 341 ELEKIQRTIKKRLPDQPAETLLVLDGSTGQNALLQAKDFDKTTKLSGLVLTKLDGSSKGG 400 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 ++ I K+PV +G+GE DL F A +++ Sbjct: 401 VVLSIRHEMKLPVKLVGLGEKAEDLADFDAANYA 434 >gi|315038612|ref|YP_004032180.1| signal recognition particle GTPase [Lactobacillus amylovorus GRL 1112] gi|312276745|gb|ADQ59385.1| signal recognition particle GTPase [Lactobacillus amylovorus GRL 1112] Length = 439 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 102/259 (39%), Positives = 154/259 (59%), Gaps = 5/259 (1%) Query: 54 IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 I SD+G A+++ +EL L ++D Q ++ + +L + + +D Sbjct: 173 IESDVGFETAEQLTDELREEAKLQNAKSRDDLKQVIVEKLVDLYDQGGQGKDEKLAYDPD 232 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +P+V L VGVNG GKTT IGKL+K+ D G V+LAA DTFR+ A++QL+ W R Sbjct: 233 AKPNVYLFVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLEEWGKRVGVP 292 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V + +D A++ Y+A +QA +K D L++DTAGRL N LMA + K+ R +K+L P Sbjct: 293 VVTGKEKADPASVVYDATEQAIKEKADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLPE 352 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P L VLD +TGQNAL Q + F TGL++TK+DG+++GG ++ I K+PV Sbjct: 353 QPAETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMKLPVKL 412 Query: 289 LGVGEGINDLEPFVAKDFS 307 +G+GE DL F A +++ Sbjct: 413 VGLGEKAEDLADFDAANYA 431 >gi|88191946|pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space Group P21212 gi|88191947|pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space Group H32 gi|88191948|pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space Group H32 Length = 320 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 104/271 (38%), Positives = 171/271 (63%), Gaps = 9/271 (3%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 ++ DD EELED+LI++D+G+ + K V L+ K+ +D S + + + E +++ Sbjct: 30 KQADDEFFEELEDVLIQTDMGMKMVLK-VSNLVRKKTKRDTSFENIKDALVESLYQAYTD 88 Query: 99 ---LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 +K + DF +R ++ ++VGVNG GKTT + K++ ++ G KV++AA DTFR+ A Sbjct: 89 NDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGA 148 Query: 155 IDQLKIWAD---RTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 QL+ W D V +++ +D A++ ++A K+A+ + D+L+IDTAGRL N + Sbjct: 149 TQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTN 208 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LMA + KM +++++++ APH VL V+DATTGQN + Q E F VA +G+I+TKMD T+ Sbjct: 209 LMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTS 268 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +GG + I IP+ +GVGE ++DL F Sbjct: 269 KGGIGLAIKELLNIPIKMIGVGEKVDDLLAF 299 >gi|322411356|gb|EFY02264.1| putative signal recognition particle-docking protein FtsY [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 516 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 109/259 (42%), Positives = 157/259 (60%), Gaps = 6/259 (2%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNWDFSH 109 +LI SD+GV VA + EEL + ++ L V ++ K++ K +N ++ Sbjct: 251 MLILSDVGVHVATTLTEELRYEAKLENAKKPDALKRV--IVEKLVDIYEKDGQYNEAINY 308 Query: 110 RP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 + V+L VGVNGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R Sbjct: 309 QDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDV 368 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + +D A++ ++ ++A A+ D+L+IDTAGRL N LMA + KM R++KR+ P Sbjct: 369 PVIMGPEKADPASVVFDGVEKAVAEGADILMIDTAGRLQNKENLMAELEKMGRIIKRVIP 428 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 APH L LDA+TGQNAL Q + F + TGLI+TK+DGTA+GG ++ I IPV Sbjct: 429 DAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVK 488 Query: 288 FLGVGEGINDLEPFVAKDF 306 F+G GE ++D+ F ++DF Sbjct: 489 FIGFGEKMDDIGEFHSEDF 507 >gi|86605466|ref|YP_474229.1| signal recognition particle-docking protein FtsY [Synechococcus sp. JA-3-3Ab] gi|86554008|gb|ABC98966.1| signal recognition particle-docking protein FtsY [Synechococcus sp. JA-3-3Ab] Length = 486 Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 111/307 (36%), Positives = 183/307 (59%), Gaps = 8/307 (2%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++++ E +SW++KL + T L L + ++ LD E +E +L+++D+GV Sbjct: 176 EEISVEEISWLQKLRRSLGKTRLNLINQLKALMGRGPLDREAVETIETMLLQADVGVEAT 235 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM---PLSKPFNWDFSHRPHVILVVGVN 120 ++I++ L + + V + + + + + +ML P P ++ L+VGVN Sbjct: 236 EQILQALQKRMREEVVPPEEAVKYLKQQMRQMLTVGDPTFAPQRGTL----NIWLIVGVN 291 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAA 179 GVGKTT IGK++ +G + ++AA DTFR+AAI+QLKIWA+R + + + +D A Sbjct: 292 GVGKTTTIGKIAHVARQSGYQCLIAAADTFRAAAIEQLKIWAERAGVEVIANPSPNADPA 351 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ ++A A+A+ ++L++DTAGRL N LM + K+ R++ + P A L VLDA Sbjct: 352 AVVFDAITAAKARGTELLLVDTAGRLQNKKNLMEELAKIRRIIDKKAPEAKVESLLVLDA 411 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 T GQN LRQ ++F VA TG+I+TK+D TA+GG + I +P+ F+G GEG+ DL Sbjct: 412 TQGQNGLRQAQVFAEVAKLTGVILTKLDSTAKGGIALAITQQMNLPIRFIGAGEGLEDLR 471 Query: 300 PFVAKDF 306 PF + +F Sbjct: 472 PFSSYEF 478 >gi|221231938|ref|YP_002511090.1| signal recognition particle 54 FtsY [Streptococcus pneumoniae ATCC 700669] gi|220674398|emb|CAR68948.1| putative signal recognition particle 54 FtsY [Streptococcus pneumoniae ATCC 700669] Length = 429 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 107/257 (41%), Positives = 153/257 (59%), Gaps = 6/257 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109 I SD+GV VA + EEL + ++ L V +I K++ K ++D F Sbjct: 166 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 223 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V+L VGVNGVGKTT IGKL+ + G KVML A DTFR+ A+ QL W R Sbjct: 224 NLTVMLFVGVNGVGKTTSIGKLAHRYKRTGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 283 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V +D A++ ++ ++A A+ +D+L+IDTAGRL N LMA + K+ R++KR+ P A Sbjct: 284 VTGPEKADPASVIFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 343 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH LDA+TGQNAL Q + F + TG+++TK+DGTARGG ++ I IPV + Sbjct: 344 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 403 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D+ F +++F Sbjct: 404 GFGEKIDDIGEFNSENF 420 >gi|320529031|ref|ZP_08030123.1| signal recognition particle-docking protein FtsY [Selenomonas artemidis F0399] gi|320138661|gb|EFW30551.1| signal recognition particle-docking protein FtsY [Selenomonas artemidis F0399] Length = 312 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 115/261 (44%), Positives = 166/261 (63%), Gaps = 6/261 (2%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SH 109 L+ +D+GV + ++ + K++ R D+ + K ++ + + + F + Sbjct: 44 LLMADVGVKTTETLIAAVRKGIKQKEI---RSPEDLIPFLEKEIVRILEEGDDTFRMAAQ 100 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+LVVG NGVGKTT IGKLS G V+LAA DTFR+AAIDQL+IW +RT+A Sbjct: 101 GPTVLLVVGTNGVGKTTTIGKLSAYYRRQGKAVLLAAADTFRAAAIDQLEIWGNRTNAQV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V GSD AA+ ++A + A+A+ VD++I+DTAGRL S LM + K+ RV+ R P A Sbjct: 161 VKHAEGSDPAAVVFDAMQAAKARGVDIVIVDTAGRLQTKSNLMQELEKIYRVIGREIPGA 220 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH L VLDA TGQNA+ Q E+F A +G+++TK+DGTA+GG I I IP+ ++ Sbjct: 221 PHETLLVLDAGTGQNAISQAELFTKAAPVSGVVLTKLDGTAKGGVTIGIKSQLSIPIKWI 280 Query: 290 GVGEGINDLEPFVAKDFSAVI 310 GVGEG++DL PF A+DF + + Sbjct: 281 GVGEGVDDLRPFRAEDFVSAL 301 >gi|298490713|ref|YP_003720890.1| signal recognition particle-docking protein FtsY ['Nostoc azollae' 0708] gi|298232631|gb|ADI63767.1| signal recognition particle-docking protein FtsY ['Nostoc azollae' 0708] Length = 518 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 104/315 (33%), Positives = 180/315 (57%), Gaps = 6/315 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + ++ E ++W++KL +G T + + I+ L+ E+E LL+++D+GV Sbjct: 204 EDISMEEITWLKKLRQGLDKTRRNILNQLKAIVGQGPLNQAAVSEIEALLLQADVGVEAT 263 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVVGV 119 +++ L K + + + + +++ ML P F+ + L+ GV Sbjct: 264 DFMIDALQKKLRDEVTAPDEAIAYLKKILRDMLDAPNKATEKSTFAPEKDNLSIWLITGV 323 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178 NG GKTT IGK++ +G K ++ A DTFR+AA++Q+K+W R+ + + + +D Sbjct: 324 NGAGKTTTIGKIAHLAHKSGYKCLIGAADTFRAAAVEQVKVWGSRSGVEVIANPGQNTDP 383 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A AQ++ ++L+IDTAGRL N LM + K+ R++ + P+ L VLD Sbjct: 384 AAVVFDAITAAQSRGTELLLIDTAGRLQNKRNLMDELSKIRRIIDKKAPNIHVESLLVLD 443 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 +T GQN LRQ E+F A +G+++TK+DGTA+GG + +V +P+ F+G GEGI DL Sbjct: 444 STLGQNGLRQAEVFSQAAQVSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGAGEGIEDL 503 Query: 299 EPFVAKDF-SAVITG 312 PF + +F A++ G Sbjct: 504 RPFSSYEFVEALLNG 518 >gi|238809629|dbj|BAH69419.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 355 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 107/276 (38%), Positives = 164/276 (59%), Gaps = 12/276 (4%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 + +++ +ELE++LI SDI + I+ + + A+ + + D+ EL+ + Sbjct: 72 KEINEEFFDELEEILIMSDINAKLVYAIITHIKNEVRARGLKDTK---DIGELVADQMFV 128 Query: 99 L-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 + N+ R ++ + VGVNG GKTT I K++ K G KV++AAGDTFR Sbjct: 129 VYTNKSIVDTTLNYQ-DGRLNIFIFVGVNGSGKTTSIAKIAYKYIKEGKKVLIAAGDTFR 187 Query: 152 SAAIDQLKIWADRTSADFVCS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 + A+DQL +WA+R A V + G D +++ YEA ++AQ +K D+L+IDTAGRL N Sbjct: 188 AGAVDQLGVWAERVGAPIVKPVKEGVDPSSVVYEALEKAQNEKYDLLLIDTAGRLQNKVN 247 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + KM ++ R APH L VLDATTGQN + Q F VA TG+I+TKMDGT+ Sbjct: 248 LMKELEKMYGIIARFQDKAPHECLLVLDATTGQNGVSQARSFKEVAAPTGIILTKMDGTS 307 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +GG ++ I + V ++G+GEG++DL+ F +F Sbjct: 308 KGGIVLLIKDEFDLNVKYIGLGEGLDDLQEFDLDNF 343 >gi|317487348|ref|ZP_07946140.1| signal recognition particle-docking protein FtsY [Bilophila wadsworthia 3_1_6] gi|316921398|gb|EFV42692.1| signal recognition particle-docking protein FtsY [Bilophila wadsworthia 3_1_6] Length = 514 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 118/296 (39%), Positives = 178/296 (60%), Gaps = 3/296 (1%) Query: 16 KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 KL +G T +L +G++ + +S L +ELE+L I +D+GV A ++ + L ++ Sbjct: 218 KLHQGLERTREQLGKGLSTLFASHGDLSADFWDELEELFIMADMGVEAATELCKRLKSRA 277 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 A + L + L ++ P + P V+L++GVNGVGKTT I KL+ + Sbjct: 278 RAASATTPEELRPL--LAAELEDIFRIPRRVVAVNPPEVVLIIGVNGVGKTTTIAKLAYR 335 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G KV+LAA DTFR+AA++QL IWA+RT + F +D AA+A+EA A + Sbjct: 336 ARMQGKKVLLAAADTFRAAAVEQLGIWAERTGSGFHSKGQDADPAAVAWEAMDVAIRDQY 395 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D+L IDTAGRLH S LM + K+ V+ R P APH + ++DATTGQNAL+Q ++F Sbjct: 396 DILFIDTAGRLHTKSNLMDELHKIREVIARKHPGAPHRSILIVDATTGQNALQQTKIFKE 455 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 AG LI+TK+DGTA+GG + + + + IP+ ++G+GE + DL PF DF+ + Sbjct: 456 AAGIDELILTKLDGTAKGGVAVAVSMQYGIPITYVGLGEKMEDLRPFNGDDFAKAL 511 >gi|300811725|ref|ZP_07092199.1| signal recognition particle-docking protein FtsY [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497301|gb|EFK32349.1| signal recognition particle-docking protein FtsY [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 432 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 102/274 (37%), Positives = 164/274 (59%), Gaps = 5/274 (1%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIH 93 R +D+ ++LE+LLI SD+G ++++ ++L L K +D + ++ + E+ Sbjct: 151 RTVDEDFFDDLEELLIESDVGYETSEELTDQLREEAKLQKAKRRDDLKRVIVQKLVEVYD 210 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 + ++ +D + +P+V L VGVNG GKTT +GKL+K+ D G KV+L A DTFR+ Sbjct: 211 ENANSENEKLAYDPNAKPNVYLFVGVNGAGKTTTVGKLAKRFHDQGKKVLLVAADTFRAG 270 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A++QL W RT V +D AA+ Y+ ++A A++ D L++DTAGRL N LM Sbjct: 271 AVEQLVEWGKRTGVPVVTGPDKADPAAVVYDGLERAIAEEADYLLVDTAGRLQNKVNLMN 330 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + K+ R +K+ P P L VLD +TGQNAL Q + F +GL++TK+DG+++GG Sbjct: 331 ELEKIQRTIKKRLPDQPAETLLVLDGSTGQNALLQAKDFDKTTKLSGLVLTKLDGSSKGG 390 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 ++ I K+PV +G+GE DL F A +++ Sbjct: 391 VVLSIRHEMKLPVKLVGLGEKAEDLADFDAANYA 424 >gi|218441933|ref|YP_002380262.1| signal recognition particle-docking protein FtsY [Cyanothece sp. PCC 7424] gi|218174661|gb|ACK73394.1| signal recognition particle-docking protein FtsY [Cyanothece sp. PCC 7424] Length = 461 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 111/315 (35%), Positives = 187/315 (59%), Gaps = 6/315 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + V ++W+++L +G T L + I+ L++ E+E LL+++D+G+ Sbjct: 147 EDVTEAEINWLKRLREGLGKTRRSLVNQLKAIVGQGPLNEDAVMEIEALLLQADVGIEAT 206 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVI---LVVGV 119 I+E L K + + ++ + + E+I ++L PL N F V+ L+ GV Sbjct: 207 DYIIEALQGKLREESLPPEQAIEYLKEIIREILDRPLKNVDNITFEPEKEVLNIWLLTGV 266 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178 NG GKTT IGKL+ + +G ++AA DTFR+AA++Q+KIW +R+ + + + +D Sbjct: 267 NGAGKTTTIGKLAHMANQSGYSCLIAAADTFRAAAVEQVKIWGERSGTEVIANPGKNTDP 326 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++ AQ+++VD+L++DTAGRL N LM + K+ R++ + P+A L VLD Sbjct: 327 AAVVFDGISAAQSRQVDLLLVDTAGRLQNKKNLMDELAKIRRIVDKKAPNAKVESLLVLD 386 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 AT GQN LRQ ++F A +G+++TK+DGTA+GG + + +P+ F+G GEGI DL Sbjct: 387 ATLGQNGLRQAQVFSEAAKLSGVVLTKLDGTAKGGVALAVAQQLNLPIRFIGAGEGIEDL 446 Query: 299 EPFVAKDF-SAVITG 312 PF + +F A++ G Sbjct: 447 RPFSSYEFVEALLNG 461 >gi|254458468|ref|ZP_05071893.1| signal recognition particle-docking protein FtsY [Campylobacterales bacterium GD 1] gi|207084776|gb|EDZ62063.1| signal recognition particle-docking protein FtsY [Campylobacterales bacterium GD 1] Length = 297 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 107/304 (35%), Positives = 177/304 (58%), Gaps = 15/304 (4%) Query: 20 GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79 GF SL ++ +R + ELED+L+ +D+ + + I+ E+ + +D+ Sbjct: 3 GFIKKSLARTADAIRTVAPKRKISFTKGELEDILLEADVEYDLVEIIINEIYQDKVTRDI 62 Query: 80 SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139 ++L ++ +K +P +F+ P V L+VGVNG GKTT I KL+++ + G Sbjct: 63 LRSKLLATLAYTSYK------EP---EFTA-PFVELIVGVNGAGKTTTISKLAQRYKNEG 112 Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199 KV+L AGDTFR+AAI+QL +W+ + V S+ G D++A+A++ A+AK D +II Sbjct: 113 KKVILGAGDTFRAAAIEQLTLWSKKLDIPIVSSKQGHDSSAVAFDTIDSAKAKGFDNVII 172 Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 DTAGRLH + L + K+ R+ + P +PH + ++D T G +A+ Q + F+ + G Sbjct: 173 DTAGRLHTQTNLANELKKINRICDKAHPGSPHRTILIIDGTQGNSAIAQAKAFNEMIGID 232 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD--YG 317 G+I+TK+DGTA+GG + I ++P+ F+G GE +L PF +F + G LD + Sbjct: 233 GIIITKLDGTAKGGSIFSIAYALELPILFVGTGEQPENLTPFDKYEF---VDGLLDAIFV 289 Query: 318 EEKI 321 EE+I Sbjct: 290 EEEI 293 >gi|50365053|ref|YP_053478.1| signal recognition particle, cell division protein GTPase [Mesoplasma florum L1] gi|50363609|gb|AAT75594.1| signal recognition particle, cell division protein GTPase [Mesoplasma florum L1] Length = 367 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 108/288 (37%), Positives = 178/288 (61%), Gaps = 12/288 (4%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL 99 +DD +ELE++LI++D+G+ + KI + +R K+ S ++ +E I+ + Sbjct: 80 MDDDFFDELEEVLIKTDMGMKMVLKISNNI--RRKVKNTSEANEFREILAEEIYDIYTDG 137 Query: 100 SK---PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 SK N++ R +V +V+GVNG GKTT + K++ ++ KV++AA DTFR+ AI+ Sbjct: 138 SKKVEELNFE-DGRLNVFMVIGVNGTGKTTSLSKIANYYAEQNKKVLIAAADTFRAGAIE 196 Query: 157 QLKIWADR---TSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 QL+ W D+ D V + D A++ ++A ++A+A+ D+L+IDTAGRL N LM Sbjct: 197 QLEEWVDKRLDNKVDLVKGKKQNQDPASVVFDALEKAKAENYDLLLIDTAGRLQNKINLM 256 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + KM +++ + D APH +L V+DATTGQN + Q + F+ VA TG+++TKMDGT++G Sbjct: 257 KELEKMYQIVHKFDKKAPHELLLVIDATTGQNGVMQAQEFNEVADVTGIVLTKMDGTSKG 316 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPF-VAKDFSAVITGCLDYGEE 319 G + I IPV +GVGE ++D+E F V + +++ G ++ EE Sbjct: 317 GIALSIKDQLNIPVKLVGVGEQVDDIEKFDVDQYVYSLVVGFMEDKEE 364 >gi|46446933|ref|YP_008298.1| signal recognition particle [Candidatus Protochlamydia amoebophila UWE25] gi|46400574|emb|CAF24023.1| probable signal recognition particle [Candidatus Protochlamydia amoebophila UWE25] Length = 309 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 115/275 (41%), Positives = 166/275 (60%), Gaps = 14/275 (5%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV---LYDVSELIHKML 96 ++D+ E+LE LL +D GV A ++ E++ +D+ Q D E + + L Sbjct: 35 KIDEHTLEQLEQLLYEADFGVKTASELTEKI------RDLHRQHPNLKTEDYIEALKQQL 88 Query: 97 MPLSKPFNWDF-----SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 + L + + S P +IL+VGVNG GKTT + KL+ + G KV++AA DTFR Sbjct: 89 ISLVSQYPSNLLELTSSQLPQIILIVGVNGNGKTTSVAKLAYQFKQKGKKVLVAAADTFR 148 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 +AAI+QL++WA + + V SD AA+A++A + A+A+K D++IIDTAGRLH + L Sbjct: 149 AAAIEQLELWAHKLHIEIVKGHPKSDPAAVAFDAIQAAKARKCDLVIIDTAGRLHTKTPL 208 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M + K+ R ++ PH L VLDATTGQNA+ Q + FH TGLI+TK+DGTA+ Sbjct: 209 MQELEKIKRSCQKASQTGPHETLLVLDATTGQNAIEQAKQFHHFTPITGLILTKLDGTAK 268 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 GG +I I IPV F+G GEG DL+PF + F Sbjct: 269 GGIVIAIQRELGIPVKFIGTGEGEEDLQPFDVQTF 303 >gi|42561024|ref|NP_975475.1| cell division protein FtsY [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492521|emb|CAE77117.1| Cell division protein FtsY [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 400 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 104/271 (38%), Positives = 170/271 (62%), Gaps = 9/271 (3%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 ++ DD EELED+LI++D+G+ + K V L+ K+ +D S + + + E +++ Sbjct: 110 KQADDEFFEELEDVLIQTDMGMKMVLK-VSNLVRKKTKRDTSFENIKDALVESLYQAYTD 168 Query: 99 ---LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 +K + DF +R ++ ++VGVNG GKTT + K++ ++ G KV++AA DTFR+ A Sbjct: 169 NDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGA 228 Query: 155 IDQLKIWAD---RTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 QL+ W D V +++ +D A++ ++A K+A+ + D+L+IDTAGRL N Sbjct: 229 TQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKVN 288 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LMA + KM +++++++ APH VL V+DATTGQN + Q E F VA +G+I+TKMD T+ Sbjct: 289 LMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTS 348 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +GG + I IP+ +GVGE ++DL F Sbjct: 349 KGGIGLAIKELLNIPIKMIGVGEKVDDLLAF 379 >gi|159030302|emb|CAO91197.1| ftsY [Microcystis aeruginosa PCC 7806] Length = 444 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 112/315 (35%), Positives = 190/315 (60%), Gaps = 6/315 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + V+ E ++W++KL +G T L + ++ L+ EE+E LL+++D+GV Sbjct: 129 EDVSEEEITWLKKLRQGLGKTRRSLVNQLKAVVGQGPLNQDAVEEIEALLLQADVGVDAT 188 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVVGV 119 I+ L K + + ++ + + E+I ++L PL+ N F ++ ++ GV Sbjct: 189 DYIITTLQNKLKQEALPPEKAIEYLKEIIREILDAPLANYSNPGFEPEKGKLNIWMLTGV 248 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178 NGVGKTT IGKL+ +G ++AA DTFR+AA++Q+K+W +R+ + + + +D Sbjct: 249 NGVGKTTTIGKLAHLSKQSGYSCIIAAADTFRAAAVEQVKVWGERSQVEVIANPGKNTDP 308 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ Y+ + A++++V++L++DTAGRL N LMA + K+ R++ + A L VLD Sbjct: 309 AAVVYDGIEAAKSREVELLLVDTAGRLQNKKNLMAELSKIRRIIDKKAESAVVESLLVLD 368 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 AT GQN LRQ E+F A +G+I+TK+DGTA+GG + + +P+ F+G GEGI DL Sbjct: 369 ATLGQNGLRQAEVFSEAAQLSGVILTKIDGTAKGGVALAVARQLNLPIRFVGAGEGIEDL 428 Query: 299 EPFVAKDF-SAVITG 312 PF + +F A+++G Sbjct: 429 RPFSSYEFVEALLSG 443 >gi|301321333|gb|ADK69976.1| signal recognition particle-docking protein FtsY [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 412 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 104/271 (38%), Positives = 170/271 (62%), Gaps = 9/271 (3%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 ++ DD EELED+LI++D+G+ + K V L+ K+ +D S + + + E +++ Sbjct: 122 KQADDEFFEELEDVLIQTDMGMKMVLK-VSNLVRKKTKRDTSFENIKDALVESLYQAYTD 180 Query: 99 ---LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 +K + DF +R ++ ++VGVNG GKTT + K++ ++ G KV++AA DTFR+ A Sbjct: 181 NDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGA 240 Query: 155 IDQLKIWAD---RTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 QL+ W D V +++ +D A++ ++A K+A+ + D+L+IDTAGRL N Sbjct: 241 TQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKVN 300 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LMA + KM +++++++ APH VL V+DATTGQN + Q E F VA +G+I+TKMD T+ Sbjct: 301 LMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTS 360 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +GG + I IP+ +GVGE ++DL F Sbjct: 361 KGGIGLAIKELLNIPIKMIGVGEKVDDLLAF 391 >gi|225374439|ref|ZP_03751660.1| hypothetical protein ROSEINA2194_00054 [Roseburia inulinivorans DSM 16841] gi|225213677|gb|EEG96031.1| hypothetical protein ROSEINA2194_00054 [Roseburia inulinivorans DSM 16841] Length = 312 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 128/321 (39%), Positives = 187/321 (58%), Gaps = 15/321 (4%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64 ++ E + +L G + T + GI + + +DD EE+E++LI DIGV + Sbjct: 1 MSEEKKGFWSRLVSGLSKTRDNIVSGIDAVFNGFSNIDDDFYEEIEEILIMGDIGVNATE 60 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPHVILVVGV 119 I+E L K+ K+ ++ D +E ++ + + + + F + V+LV+GV Sbjct: 61 AIIENL--KKKVKENHIK----DPAECKELLINSIKEQMDVGETAYRFENEKSVVLVIGV 114 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT +GKL+ K+ D G KV+LAA DTFR+AA QL+ WA+R + + + G+D Sbjct: 115 NGVGKTTSVGKLAGKLKDQGKKVVLAAADTFRAAAGTQLQEWANRAGVEMIGGQEGADPG 174 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ Y+A A+A+ DVL+ DTAGRLHN LM + K+ R+L++ P A L VLDA Sbjct: 175 AIVYDAVAAAKARNADVLLCDTAGRLHNKKNLMEELRKINRILEKEYPDAFRETLVVLDA 234 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNAL Q F VA TG+I+TKMDGTA+GG + I IPV ++GVGE I DL+ Sbjct: 235 TTGQNALAQAREFADVADITGIILTKMDGTAKGGIAVAIHSELGIPVKYIGVGETIEDLQ 294 Query: 300 PFVAKDFSAVITGCLDYGEEK 320 F + F + D E+K Sbjct: 295 KFDSNQF---VNALFDVQEDK 312 >gi|297824631|ref|XP_002880198.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297326037|gb|EFH56457.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 366 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 110/274 (40%), Positives = 165/274 (60%), Gaps = 9/274 (3%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEEL----LTKRYAKDVSVQRVLY-DVSELIHKMLM 97 D V +ELE+ L+ SD G + +IVE L ++ + ++ L V E++ K Sbjct: 94 DRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKGSVLEMLAKKNT 153 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 + +P VI++VGVNG GKTT +GKL+ ++ + G KV++AAGDTFR+AA DQ Sbjct: 154 KTELQLGF---RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQ 210 Query: 158 LKIWADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 L+IWA+RT + V +E + AA + +A K+ + + DV++ DT+GRLH N LM + Sbjct: 211 LEIWAERTGCEIVVAEGEKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI 270 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + + ++ AP+ +L VLD TG N L Q F+ V G TGLI+TK+DG+ARGG ++ Sbjct: 271 ACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVV 330 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +V IPV F+GVGE + DL+PF + F I Sbjct: 331 SVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAI 364 >gi|307103932|gb|EFN52189.1| hypothetical protein CHLNCDRAFT_139411 [Chlorella variabilis] Length = 355 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 126/300 (42%), Positives = 174/300 (58%), Gaps = 13/300 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDG--VREELEDLLIRSDIGVAVAQKIVEELLTK 73 ++ KG + T KL I ++ + LDD EELED LI SD G A KIV+ + K Sbjct: 39 RIVKGTSKTREKLGV-IEELFTYWNLDDADETLEELEDALIMSDFGPRTAFKIVDGIRDK 97 Query: 74 RYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKL 131 A + ++ ++ + I +L +P V+L+VGVNG GKTT IGKL Sbjct: 98 VLAGQLKTGDQIRAELKQSIAALLAERGGSAELALPDSKPAVLLIVGVNGGGKTTTIGKL 157 Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA---ALAYEAFK 187 + + ++ G KV+L AGDTFR+AA +QL+ WA R AD V ++ SD A + Y+A Sbjct: 158 AHRFGAEGGAKVVLGAGDTFRAAAAEQLEEWARRAGADIVRAD--SDKARPDTVLYQAVD 215 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR-VLKRLDPHAPHSVLQVLDATTGQNAL 246 A D+++ DT+GRLH N LM + K R + KRLD APH VL VLD TTG N L Sbjct: 216 AAVRGGADLVLCDTSGRLHTNWSLMDELAKCKRSIAKRLD-GAPHEVLLVLDGTTGLNML 274 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q + F+ TG+I+TK+DGTARGG ++ +V +PV F+GVGEG+ DL+PF F Sbjct: 275 NQAKEFNETVQLTGIILTKLDGTARGGAVVSVVDELGVPVKFVGVGEGVQDLQPFQPATF 334 >gi|284048839|ref|YP_003399178.1| signal recognition particle-docking protein FtsY [Acidaminococcus fermentans DSM 20731] gi|283953060|gb|ADB47863.1| signal recognition particle-docking protein FtsY [Acidaminococcus fermentans DSM 20731] Length = 305 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 117/298 (39%), Positives = 174/298 (58%), Gaps = 4/298 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +S++ +L G + T E + D++ +S LD+ +E+E +L+ D+G+ +KI+ Sbjct: 1 MSFMEQLKDGLSKTRKNFTERMEDLVGASVDLDEDFMDEMEMILVAGDVGIKTTEKIMAA 60 Query: 70 LLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L + + S L + I +L F P ++LVVGVNGVGKTT I Sbjct: 61 LRKAAATRQIKSPAEALPFLKSYIADLLKTTGPRMR--FKGHPSIVLVVGVNGVGKTTTI 118 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKLS G KVM+ A DTFR+ A +QL+IW + D + G+D AA+ Y+ K Sbjct: 119 GKLSNYYRLMGYKVMMCAADTFRAGATEQLQIWGKKAQVDVIAHGDGADPAAVVYDGVKA 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A A+K DVL +DTAGRLHN + LM + K+ RV+++ P PH L VLDATTGQNA+ Q Sbjct: 179 AIARKADVLFVDTAGRLHNKTNLMKELDKIYRVIRKEIPDGPHETLLVLDATTGQNAISQ 238 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++F A TG+++TK+DGTA+GG ++ I + V ++G+GEG+ D PF + F Sbjct: 239 AKIFLETAHVTGVVLTKLDGTAKGGVVVAIKEELGLDVKWIGIGEGMMDFRPFDPQQF 296 >gi|16330588|ref|NP_441316.1| cell division protein FtsY [Synechocystis sp. PCC 6803] gi|3334191|sp|P73930|FTSY_SYNY3 RecName: Full=Cell division protein ftsY homolog gi|1653079|dbj|BAA17996.1| cell division protein; FtsY [Synechocystis sp. PCC 6803] Length = 504 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 111/313 (35%), Positives = 188/313 (60%), Gaps = 6/313 (1%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 V++E + W+RKL +G + T + L + I+ L++ EE+E +L+++D+GV Sbjct: 192 VSAEEIDWLRKLRQGLSKTRVNLVNQLKSIVGQGPLNEAAVEEIEAILLQADVGVEATDY 251 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVVGVNG 121 I+ L K + + ++ + + E++ +L PL + +F+ +V L+ GVNG Sbjct: 252 IITTLQDKLREEALPPEQAIEFLKEILRSILDRPLLSLPSAEFAPEAEGLNVWLLTGVNG 311 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180 GKTT IGKL+ +G ++AA DTFR+AA++Q+K+W +R+ + + +D AA Sbjct: 312 AGKTTTIGKLAFMAKQSGYDCVIAAADTFRAAAVEQVKVWGERSGVPVIANPGQNTDPAA 371 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + Y+ AQ++ V++L++DTAGRL N LM + K+ R++ + P+A L VLDAT Sbjct: 372 VVYDGISAAQSRNVNLLLVDTAGRLQNKKNLMDELAKIRRIIDKKAPNATVESLLVLDAT 431 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQN LRQ E+F A +G+++TK+DG+A+GG + + +P+ F+G GEGI DL P Sbjct: 432 LGQNGLRQAEVFAEAAKLSGVVLTKLDGSAKGGVALAVAQQLNLPIRFIGAGEGIEDLRP 491 Query: 301 FVAKDF-SAVITG 312 F + +F A++ G Sbjct: 492 FSSYEFVEALLNG 504 >gi|153816161|ref|ZP_01968829.1| hypothetical protein RUMTOR_02409 [Ruminococcus torques ATCC 27756] gi|317500481|ref|ZP_07958705.1| signal recognition particle-docking protein FtsY [Lachnospiraceae bacterium 8_1_57FAA] gi|331089418|ref|ZP_08338317.1| signal recognition particle-docking protein FtsY [Lachnospiraceae bacterium 3_1_46FAA] gi|145846496|gb|EDK23414.1| hypothetical protein RUMTOR_02409 [Ruminococcus torques ATCC 27756] gi|316898236|gb|EFV20283.1| signal recognition particle-docking protein FtsY [Lachnospiraceae bacterium 8_1_57FAA] gi|330404786|gb|EGG84324.1| signal recognition particle-docking protein FtsY [Lachnospiraceae bacterium 3_1_46FAA] Length = 312 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 133/304 (43%), Positives = 189/304 (62%), Gaps = 10/304 (3%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66 E + R+L G A T + G+ I ++D+ EELE+ LI D+GV +I Sbjct: 2 EEKKGFFRRLVSGLAKTRDNIVSGMDSIFHGFSKIDEEFYEELEETLIMGDLGVHSTMEI 61 Query: 67 VEELLTK---RYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 +E+L K R+ K+ + +++L D + +M + + ++F +R V+ V+GVNGV Sbjct: 62 LEDLRAKVKERHIKEPIECRQLLID--SIREQMDVGETA---YEFENRTSVVFVIGVNGV 116 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+ K+ G KV+LAA DTFR+AA +QL+ WA+R AD + + G+D AA+ Sbjct: 117 GKTTTIGKLAGKLKSQGKKVVLAAADTFRAAAGEQLREWANRADADMIGGQEGADPAAVI 176 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A A+A+ DVL+ DTAGRLHN LM + K+ RV+ R P A L VLDATTG Sbjct: 177 YDAVAAAKARHADVLLCDTAGRLHNKKNLMEELKKINRVIDREYPEAFRETLVVLDATTG 236 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL Q + F+ VA TG+I+TKMDGTA+GG + I IPV ++GVGE I+DL+ F Sbjct: 237 QNALAQAKEFNEVADITGVILTKMDGTAKGGIAVAIQAELGIPVKYIGVGETIDDLQKFD 296 Query: 303 AKDF 306 A +F Sbjct: 297 ADEF 300 >gi|285206567|gb|ADC35059.1| cell division membrane protein FtsY [Diplorickettsia massiliensis] Length = 241 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 94/212 (44%), Positives = 136/212 (64%), Gaps = 1/212 (0%) Query: 56 SDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114 +D+G+ V ++I+ EL K + + + Q V + + +L P +P + S++P VI Sbjct: 30 ADVGLTVTEEIINELTQKLHRQQLIDGQAVWTALEHALTALLKPCEQPLCIEVSNKPFVI 89 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 LV+GVNGVGKTT IGKL+ G +V+LAAGDTFR+AA +QL WA+R + Sbjct: 90 LVIGVNGVGKTTTIGKLAHYFKSQGKQVLLAAGDTFRAAATEQLAAWAERNEVPIIAQHQ 149 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 G+D+A++ Y+A + AQA+ +D+LI DTAGRLH LM + K+ +VL +LDP APH L Sbjct: 150 GADSASVIYDALQAAQARNIDILIADTAGRLHTKEHLMQELAKVKKVLAKLDPAAPHETL 209 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 VLDA+ GQN+L Q + FH TGL +TK+ Sbjct: 210 LVLDASIGQNSLAQAQFFHQSIQLTGLALTKL 241 >gi|307244289|ref|ZP_07526404.1| signal recognition particle-docking protein FtsY [Peptostreptococcus stomatis DSM 17678] gi|306492439|gb|EFM64477.1| signal recognition particle-docking protein FtsY [Peptostreptococcus stomatis DSM 17678] Length = 431 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 113/262 (43%), Positives = 165/262 (62%), Gaps = 11/262 (4%) Query: 56 SDIGVAVAQKIVE---ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN--WDFSHR 110 +D+GV +I++ +++ +R KD +V +L+ +++ + N D Sbjct: 176 ADVGVTTTMEIIDRLRDMIKERGVKDP------IEVRDLLKEIVASILNEGNSGLDLDPG 229 Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VI++VGVNGVGKTT IGKL+++ G KVMLAA DTFR+AA +QL IWA R D + Sbjct: 230 PAVIVMVGVNGVGKTTTIGKLAQRYKKDGKKVMLAAADTFRAAASEQLDIWAKRVDVDII 289 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 G+D A+ ++A K +QA+KVD+LI DTAGRLHN + LM +GK+ +++ R P A Sbjct: 290 KHHEGADPGAVVFDAIKASQARKVDLLICDTAGRLHNKANLMNELGKIFKIIDREYPEAK 349 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 VL V+DATTGQNA+ Q + F VA TG+++TK+DGTA+GG ++ + +PV +G Sbjct: 350 KEVLLVVDATTGQNAVSQAKTFKEVANITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIG 409 Query: 291 VGEGINDLEPFVAKDFSAVITG 312 VGE DL+ F A F+ I G Sbjct: 410 VGERAEDLQSFDADSFTDAIFG 431 >gi|298385678|ref|ZP_06995236.1| signal recognition particle-docking protein FtsY [Bacteroides sp. 1_1_14] gi|298261819|gb|EFI04685.1| signal recognition particle-docking protein FtsY [Bacteroides sp. 1_1_14] Length = 319 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 121/297 (40%), Positives = 180/297 (60%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG + T + I ++ + ++DD V + LE++LI SD+GV I++ + KR Sbjct: 15 LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRA 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVIG 129 A D V+ Q + + + + I +L + F+ +P+V++VVGVNGVGKTT IG Sbjct: 74 AADKYVNTQELNHILRDEIAALLTENNSDDVADFDVPIEKKPYVMMVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG V L A DTFR+AA++QL IW +R V ++G+D A++A++ A Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGTDPASVAFDTLSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A DV+IIDTAGRLHN LM + K+ V+K++ P+AP VL VLD +TGQNA Q Sbjct: 194 VANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPNAPDEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F T + +TK+DGTA+GG +I I KIPV ++G+GEG+ DL+ F +F Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKNEF 310 >gi|238854772|ref|ZP_04645102.1| cell division protein FtsY [Lactobacillus jensenii 269-3] gi|260664004|ref|ZP_05864857.1| signal recognition particle-docking protein FtsY [Lactobacillus jensenii SJ-7A-US] gi|282933850|ref|ZP_06339198.1| FtsY-like protein [Lactobacillus jensenii 208-1] gi|238832562|gb|EEQ24869.1| cell division protein FtsY [Lactobacillus jensenii 269-3] gi|260561890|gb|EEX27859.1| signal recognition particle-docking protein FtsY [Lactobacillus jensenii SJ-7A-US] gi|281301939|gb|EFA94193.1| FtsY-like protein [Lactobacillus jensenii 208-1] Length = 437 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 101/275 (36%), Positives = 160/275 (58%), Gaps = 8/275 (2%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 R +D+ +ELEDLLI SD+G +++++++L + ++V L + ++ K++ Sbjct: 157 RSVDENFFDELEDLLIESDVGFETSEELIDQLKDEAKLQNVKSHDELKKL--IVQKLVEI 214 Query: 99 LSKPFNWDFSH------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 + + D + +V L VGVNG GKTT IGKL+++ G KV+L A DTFR+ Sbjct: 215 YDQNGDADAEKLTYNEGKTNVYLFVGVNGAGKTTTIGKLAQRFKQEGKKVVLVAADTFRA 274 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 A++QLK W RT + V + +D A++ Y+ K + D +++DTAGRL N LM Sbjct: 275 GAVEQLKEWGKRTETEVVTGPVQADPASVVYDGVKHGLEEDADYVLVDTAGRLQNKQNLM 334 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + K+ R +K+L P P L VLD +TGQNAL Q + F TGL++TK+DG+++G Sbjct: 335 KELEKIERTIKKLVPDQPCETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKG 394 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 G ++ I K+PV +G+GE DL F A ++ Sbjct: 395 GVILAIRNEMKLPVKLVGLGEKAEDLADFDAASYA 429 >gi|253568254|ref|ZP_04845665.1| recognition particle-docking protein FtsY [Bacteroides sp. 1_1_6] gi|251842327|gb|EES70407.1| recognition particle-docking protein FtsY [Bacteroides sp. 1_1_6] Length = 319 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 121/297 (40%), Positives = 180/297 (60%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG + T + I ++ + ++DD V + LE++LI SD+GV I++ + KR Sbjct: 15 LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRA 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVIG 129 A D V+ Q + + + + I +L + F+ +P+V++VVGVNGVGKTT IG Sbjct: 74 AADKYVNTQELNHILRDEIAALLTENNSDDVADFDVPIEKKPYVMMVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG V L A DTFR+AA++QL IW +R V ++G+D A++A++ A Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGADPASVAFDTLSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A DV+IIDTAGRLHN LM + K+ V+K++ P+AP VL VLD +TGQNA Q Sbjct: 194 VANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPNAPDEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F T + +TK+DGTA+GG +I I KIPV ++G+GEG+ DL+ F +F Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKNEF 310 >gi|78777041|ref|YP_393356.1| cell division transporter substrate-binding protein FtsY [Sulfurimonas denitrificans DSM 1251] gi|78497581|gb|ABB44121.1| signal recognition particle-docking protein FtsY [Sulfurimonas denitrificans DSM 1251] Length = 292 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 106/297 (35%), Positives = 172/297 (57%), Gaps = 15/297 (5%) Query: 20 GFASTSL-KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78 GF SL K E + ++ ++L + E+E++L+ +D+ A+ + I+ EL + ++ Sbjct: 3 GFIKKSLHKTAEALKLVVPKKKLSFS-KNEIEEILLEADVEYALVEIIINELYQSKITRE 61 Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138 + ++L ++ +K FN P V L+VGVNG GKTT I KL+ K + Sbjct: 62 ILRPKLLATLAYTSYK-----EPEFN-----APFVELIVGVNGAGKTTTISKLALKYKND 111 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 G K+ML AGDTFR+AAI+QL +WA + + V S+ G D++A+AY+ + A++K D +I Sbjct: 112 GKKIMLGAGDTFRAAAIEQLSLWAKKLNIPIVASKQGHDSSAVAYDTIESAKSKGYDHVI 171 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 IDTAGRLH + L + K+ R+ + APH ++D T G +A+ Q + F+ + G Sbjct: 172 IDTAGRLHTQTNLANELKKIHRICDKAHSGAPHRTTLIIDGTQGNSAIAQAKAFNEMIGV 231 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G+I+TK+DGTA+GG + I +P+ ++G GE +L PF +F + G LD Sbjct: 232 DGIIITKLDGTAKGGSIFSIAYALNLPILYVGTGEQPENLTPFDKYEF---VDGLLD 285 >gi|302335830|ref|YP_003801037.1| signal recognition particle-docking protein FtsY [Olsenella uli DSM 7084] gi|301319670|gb|ADK68157.1| signal recognition particle-docking protein FtsY [Olsenella uli DSM 7084] Length = 301 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 101/278 (36%), Positives = 170/278 (61%), Gaps = 15/278 (5%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSELIHKML 96 +D+G E+LED L+ D+G VA + ++L + ++++ ++R L + L + Sbjct: 28 VDEGFWEDLEDRLVMGDMGAEVAMGVTDDLREQAARENLTTAPRLRRALAE--RLAREFC 85 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 +P PF P ++ VG+NG GKTT +GKL+ G ++ DTFR+AAI+ Sbjct: 86 VPERDPFE----DLPSCVVFVGINGAGKTTTVGKLAGVARREGTSCLIGGADTFRAAAIE 141 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL++W +R+ + V E G+D A++ Y+ ++A+ + ++++DTAGRLH++ LM + Sbjct: 142 QLQVWGERSGTEVVTRERGADPASVCYDVIERAEREGTQLVLVDTAGRLHSSPELMRELA 201 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 K++ V +R P SV+ V+DATTGQN L Q + F+ G+++TK+DGTA+GG I Sbjct: 202 KVVGVTRRR-SSTPVSVVLVIDATTGQNGLAQAKEFNDALDLDGIVVTKLDGTAKGG--I 258 Query: 277 PIVVTHK--IPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + ++H +P+Y +GVGEGI+DL+ F A +FS + G Sbjct: 259 AVAISHNLSLPIYRIGVGEGIDDLQAFDALEFSRALVG 296 >gi|153954024|ref|YP_001394789.1| hypothetical protein CKL_1399 [Clostridium kluyveri DSM 555] gi|219854638|ref|YP_002471760.1| hypothetical protein CKR_1295 [Clostridium kluyveri NBRC 12016] gi|146346905|gb|EDK33441.1| FtsY [Clostridium kluyveri DSM 555] gi|219568362|dbj|BAH06346.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 303 Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 129/296 (43%), Positives = 188/296 (63%), Gaps = 4/296 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + KL G T E ITD++S + +D+ + EELE++LI DIGV I+E L Sbjct: 5 FFDKLKNGLEKTKNNFTEKITDLLSKAVNIDEELYEELEEILITCDIGVETTLYIIENLK 64 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + + +L + + E+I +L + + + S+ P +ILV+GVNGVGKTT IGK Sbjct: 65 KKIKEEKIKDPSLLSNSLKEVILDILG--DEENSIEPSNTPEIILVIGVNGVGKTTSIGK 122 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 + ++ D G KV++AA DTFR+AAI+QL+IW++R D + + GSD AA+ ++A + ++ Sbjct: 123 ICCRLKDEGYKVVMAAADTFRAAAIEQLEIWSERAGVDIIKHQPGSDPAAVIFDAIQASK 182 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+K DVL+ DTAGRLHN LM + K+ RV+ R A VLDATTGQNAL+Q + Sbjct: 183 ARKADVLVCDTAGRLHNKKNLMEELAKINRVIDREHKEAYRQTFLVLDATTGQNALQQAK 242 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F V G+++TK+DGTA+GG +I I T IPV +GVGEGI DL+ F +++F Sbjct: 243 QFMEVCPIDGIVLTKLDGTAKGGIVISIKHTLNIPVKLIGVGEGIYDLQEFKSREF 298 >gi|29346324|ref|NP_809827.1| recognition particle-docking protein FtsY [Bacteroides thetaiotaomicron VPI-5482] gi|29338219|gb|AAO76021.1| recognition particle-docking protein FtsY [Bacteroides thetaiotaomicron VPI-5482] Length = 319 Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 121/297 (40%), Positives = 180/297 (60%), Gaps = 8/297 (2%) Query: 17 LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 L KG + T + I ++ + ++DD V + LE++LI SD+GV I++ + KR Sbjct: 15 LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRA 73 Query: 76 AKD--VSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVIG 129 A D V+ Q + + + + I +L + F+ +P+V++VVGVNGVGKTT IG Sbjct: 74 AADKYVNTQELNHILRDEIAALLTENNSDDVADFDVPIKKKPYVMMVVGVNGVGKTTTIG 133 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + AG V L A DTFR+AA++QL IW +R V ++G+D A++A++ A Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGADPASVAFDTLSSA 193 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A DV+IIDTAGRLHN LM + K+ V+K++ P+AP VL VLD +TGQNA Q Sbjct: 194 VANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPNAPDEVLLVLDGSTGQNAFEQA 253 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F T + +TK+DGTA+GG +I I KIPV ++G+GEG+ DL+ F +F Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKNEF 310 >gi|294055108|ref|YP_003548766.1| signal recognition particle-docking protein FtsY [Coraliomargarita akajimensis DSM 45221] gi|293614441|gb|ADE54596.1| signal recognition particle-docking protein FtsY [Coraliomargarita akajimensis DSM 45221] Length = 310 Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 108/305 (35%), Positives = 177/305 (58%), Gaps = 2/305 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL- 70 S RK G + + + S +LD +ELE+ L +D GV ++I++E+ Sbjct: 3 SLFRKFKDGLKKQTPTFHKAFDKVFSGAKLDQDALDELEEALYTADFGVETVEEIIDEIK 62 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + + KD+ + + ++ ++L H+P VI ++GVNG GKTT K Sbjct: 63 VAYKADKDIRGEDAARIGATVLARVLEGAEGRVEVG-KHKPEVIALIGVNGAGKTTTSAK 121 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L + G ++L A DTFR+AA +Q++ WA R D V S+ G+D+AA+A++A+ A Sbjct: 122 LGHMYQNDGYSILLGACDTFRAAANEQIQHWAKRLKIDIVSSQHGADSAAVAFDAYAAAV 181 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 ++ D++I+DTAGRLH + LM + K RV+K+ D APH V+D + G N++ Q Sbjct: 182 SRGRDIVILDTAGRLHTKNNLMKELEKFQRVIKKQDESAPHHAWLVVDGSLGSNSIEQAR 241 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F+ +GLI+TK+DGT+RGG L+ I K+P+YF+G+GE +DL+PF A++++ I Sbjct: 242 VFNESFPLSGLIITKLDGTSRGGALVGIYRELKLPIYFVGLGEQPDDLQPFSAENYANAI 301 Query: 311 TGCLD 315 G + Sbjct: 302 FGITE 306 >gi|260063511|ref|YP_003196591.1| signal recognition particle-docking protein FtsY [Robiginitalea biformata HTCC2501] gi|88782955|gb|EAR14129.1| signal recognition particle-docking protein FtsY [Robiginitalea biformata HTCC2501] Length = 320 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 113/277 (40%), Positives = 171/277 (61%), Gaps = 5/277 (1%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYD-VS 89 ++ ++DD V + LE++L+ SD+GV KI+ E + +Y + R+L + ++ Sbjct: 35 VVGKSKVDDEVLDNLEEVLVTSDVGVETTLKIIGRIEERVARDKYVGTDELDRILREEIA 94 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 L+ + + + P+V++VVGVNGVGKTT IGKL+ + + G KV+L A DT Sbjct: 95 GLLEETHSGEAAEVSLPEVEGPYVVMVVGVNGVGKTTTIGKLAHQFNQQGKKVILGAADT 154 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+AAI+QL+IWA+R V +GSD A++A++ A ++ D+++IDTAGRLHN Sbjct: 155 FRAAAIEQLEIWAERVGVPIVKQRMGSDPASVAFDTLSSAVGQQADIVLIDTAGRLHNKV 214 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 LM + K+ RV++++ P APH VL VLD +TGQNA Q F L +TK+DGT Sbjct: 215 NLMNELTKVRRVMQKVIPGAPHEVLLVLDGSTGQNAFEQARQFTRATEVNSLAVTKLDGT 274 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 A+GG +I I IPV ++GVGEG+ DL+ F +F Sbjct: 275 AKGGVVIGISDQFGIPVKYIGVGEGVEDLQVFNKYEF 311 >gi|1929401|emb|CAA71224.1| ftsY [Mycoplasma mycoides] Length = 412 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 103/271 (38%), Positives = 170/271 (62%), Gaps = 9/271 (3%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 ++ DD EELED+LI++D+G+ + K V L+ K+ +D S + + + E +++ Sbjct: 122 KQADDEFFEELEDVLIQTDMGMKMVLK-VSNLVRKKTKRDTSFENIKDALVESLYQAYTD 180 Query: 99 ---LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 +K + DF +R ++ ++VGVNG GKTT + K++ ++ G KV++AA DTF + A Sbjct: 181 NDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFSAGA 240 Query: 155 IDQLKIWAD---RTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 QL+ W D V +++ +D A++ ++A K+A+ + D+L+IDTAGRL N + Sbjct: 241 TQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTN 300 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LMA + KM +++++++ APH VL V+DATTGQN + Q E F VA +G+I+TKMD T+ Sbjct: 301 LMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTS 360 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +GG + I IP+ +GVGE ++DL F Sbjct: 361 KGGIGLAIKELLNIPIKMIGVGEKVDDLLAF 391 >gi|291557098|emb|CBL34215.1| signal recognition particle-docking protein FtsY [Eubacterium siraeum V10Sc8a] Length = 301 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 127/298 (42%), Positives = 179/298 (60%), Gaps = 5/298 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + KL G +T L IT +I+S ++D+ EELE+ LI SDIG + I E Sbjct: 1 MGLFEKLKNGLKNTKEALASKITGVINSFTKIDEDFFEELEETLILSDIGAVTSANICEA 60 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVI 128 L + A + +V L+ K++ + + N +P VILV+GVNG GKTT I Sbjct: 61 LRKEVKATGTTDP---AEVKGLLKKIIAGILEGENELILDTKPTVILVIGVNGAGKTTTI 117 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ + +G KV++AA DTFR+AAI+QL++W R D + GSD AA+ ++A K Sbjct: 118 GKLAYNLKSSGKKVVVAAADTFRAAAIEQLEVWTQRAGVDIIKHSEGSDPAAVVFDAVKA 177 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ DV+I DTAGRLHN LM + K+ R++ P + L VLDATTGQNA+ Q Sbjct: 178 GIARDADVIICDTAGRLHNKKNLMDELKKIARIVNNNAPDSRVETLLVLDATTGQNAVNQ 237 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F A TG+++TK+DGTA+GG +IPI IPV +GVGE I+DL+PFV +D+ Sbjct: 238 ARLFKETADITGIVLTKLDGTAKGGIIIPIKEELGIPVKLVGVGEKIDDLQPFVPRDY 295 >gi|15807251|ref|NP_295981.1| signal recognition particle-docking protein FtsY [Deinococcus radiodurans R1] gi|6460064|gb|AAF11805.1|AE002058_5 signal recognition particle-docking protein FtsY [Deinococcus radiodurans R1] Length = 317 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 121/314 (38%), Positives = 179/314 (57%), Gaps = 27/314 (8%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSR------RLDDGVREELEDLLIRSDIGVAVAQ 64 +SW +L +G + T ++ G + R+D+ E+LE LI +D+G A + Sbjct: 1 MSWFDRLRQGLSKTRQQIS-GTAGPLDQEVQTAFTRIDN--IEDLEYALIAADVGRAATE 57 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-------FNWDFSH-----RPH 112 +I+E++ R + +Q L L L P ++ F+ D S + H Sbjct: 58 EIIEDI---RKNGEGRLQDALMRALTL---QLEPNARRAQFRELGFSPDVSRSKVDPKGH 111 Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 V++V+GVNGVGKTT I KL + + G VM AAGDTFR+AA QL +W +R + Sbjct: 112 VVMVIGVNGVGKTTTIAKLGQYYMERGQSVMFAAGDTFRAAAGTQLGVWGERLGVPVIQG 171 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 G D AA+A++A +A+ D+L +DTAGRLHN LM + K+ RV+ + DP P Sbjct: 172 VDGGDPAAVAFDAAGARKARGTDLLFVDTAGRLHNKHNLMEELKKVRRVIDKADPGEPAE 231 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 V VLDA TGQN L+Q + FH TG+++TK+DGTA+GG L+PIV +P+ F+GVG Sbjct: 232 VWLVLDAVTGQNGLQQAKKFHEATPLTGVVVTKLDGTAKGGILVPIVRELGVPIKFIGVG 291 Query: 293 EGINDLEPFVAKDF 306 E DL+PF +++F Sbjct: 292 EQPGDLQPFDSQEF 305 >gi|314986452|gb|EFT30544.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL005PA2] gi|314990812|gb|EFT34903.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL005PA3] Length = 396 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 114/292 (39%), Positives = 180/292 (61%), Gaps = 12/292 (4%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQR 83 L G+ +++S+ +LDD ++ E LI SD+GV ++VE+L ++ +S + Sbjct: 105 LARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDPAHARE 164 Query: 84 VLYDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 VL+ EL+ + + + N D +P V+L+VGVNG GKTT GKL++ + G V Sbjct: 165 VLH--HELVELVGSDMDRSINLDRLEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEGKTV 222 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +L A DTFR+AA +QL+ W +R V + G+D A++AYEA + + VDV+++DTA Sbjct: 223 LLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQTGIDEGVDVVLVDTA 282 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRLH + LM +GK+ RV+++L P + VL VLDATTGQN L Q +F V TG++ Sbjct: 283 GRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLAQARVFSEVVDVTGIV 340 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 ++K+DG+A+GG ++ + +PV +G+GEG +DL P A +F +TG + Sbjct: 341 LSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPLDADNF---VTGLM 389 >gi|124515715|gb|EAY57224.1| Cell division protein (FtsY) [Leptospirillum rubarum] Length = 309 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 117/295 (39%), Positives = 167/295 (56%), Gaps = 14/295 (4%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL--L 71 +++L G T KL + + R EELEDLLI SD+G A ++ +L Sbjct: 4 LQRLGAGLKKTREKLGNNLAQLFGKER-SPQFYEELEDLLILSDVGPEQATLLIRDLKDW 62 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF-----NWDFSHRPHVILVVGVNGVGKTT 126 K +L+ + E I PL+ P +W +P VIL+VGVNGVGKTT Sbjct: 63 EKNSGNGTKGDPLLF-LEERIASFF-PLNPPVWVEQPDW----KPVVILMVGVNGVGKTT 116 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 GKL+ + G V+L A DTFR+AA+ QL++W ++ V + G+D AA+A++ Sbjct: 117 TTGKLAHRFQQDGKSVILGAADTFRAAAVQQLRLWGEKLEIPVVHQKEGADPAAVAFDTV 176 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 K A A+KVDV IIDTAGRL LMA +GK+ ++KR P L VLD+T GQN + Sbjct: 177 KAALARKVDVAIIDTAGRLQTKHNLMAELGKIHGLVKREMEDRPFETLIVLDSTLGQNTV 236 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 Q+E F +G+I+TK+DGT++GG ++ + +PV F+GVGEG +DL F Sbjct: 237 SQMEHFRKAIPVSGMILTKLDGTSKGGIVVSLARKFHLPVRFVGVGEGKDDLVEF 291 >gi|302756335|ref|XP_002961591.1| hypothetical protein SELMODRAFT_77470 [Selaginella moellendorffii] gi|302775590|ref|XP_002971212.1| hypothetical protein SELMODRAFT_95155 [Selaginella moellendorffii] gi|300161194|gb|EFJ27810.1| hypothetical protein SELMODRAFT_95155 [Selaginella moellendorffii] gi|300170250|gb|EFJ36851.1| hypothetical protein SELMODRAFT_77470 [Selaginella moellendorffii] Length = 333 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 111/255 (43%), Positives = 158/255 (61%), Gaps = 4/255 (1%) Query: 56 SDIGVAVAQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDF-SHRPHV 113 SD G A KIV+ L A + Q + + + I K+L + + + RP V Sbjct: 73 SDFGPRTAIKIVDGLRKDVLAAKLKTGQEIKLALKKSIVKLLTSRAGSTDLKLGTRRPAV 132 Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 I+VVGVNG GKTT IGKL+ ++ + G+K+++AAGDTFR+AA +QL++WA+RT +D V + Sbjct: 133 IMVVGVNGGGKTTTIGKLAHRLKKEKGVKILMAAGDTFRAAAKEQLEVWAERTESDIVRA 192 Query: 173 EIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 E G A + A K+A A+K D+++ DT+GRLH N LM + + + + AP+ Sbjct: 193 EEGQKKPAPVLSRAVKRAVAEKFDIVLADTSGRLHTNFSLMDELEDCKKAIGKALAGAPN 252 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 VL VLD TTG N L Q F+ V G TG ++TK+DGTARGG + +V IPV F+GV Sbjct: 253 EVLMVLDGTTGLNMLPQAREFNDVVGVTGFVLTKLDGTARGGCVASVVDELGIPVKFVGV 312 Query: 292 GEGINDLEPFVAKDF 306 GEG+ DL+PF A+ F Sbjct: 313 GEGLEDLQPFDAEAF 327 >gi|294155880|ref|YP_003560264.1| signal recognition particle-docking protein FtsY [Mycoplasma crocodyli MP145] gi|291600360|gb|ADE19856.1| signal recognition particle-docking protein FtsY [Mycoplasma crocodyli MP145] Length = 350 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 104/268 (38%), Positives = 164/268 (61%), Gaps = 6/268 (2%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSELIHK 94 +++DD +ELE++LI SDI + KI+E++ + ++ + ++ D LI+ Sbjct: 65 KKIDDEYFDELEEVLIMSDINTDLVFKIIEKIKKEVKTNNIDDPKMIGEIVADQMFLIYT 124 Query: 95 MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 ++ N+ + R +V ++VGVNG GKTT I KL+ + G KV++AA DTFR+ A Sbjct: 125 NKTIVNTNLNFK-NERLNVFVMVGVNGSGKTTSIAKLAHRYKMQGKKVVIAAADTFRAGA 183 Query: 155 IDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 +DQL +WA++ D V + G+D +++ ++ + A+ D+LIIDTAGRL N LM Sbjct: 184 VDQLSVWANKIGVDIVKPDKEGADPSSVVFKGLEYAKNNYYDLLIIDTAGRLQNKINLMK 243 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + KM V+++ P APH L VLD TTGQN L Q ++F V +G+I+TKMDGT++GG Sbjct: 244 ELEKMFGVIRKFVPDAPHEALLVLDGTTGQNGLSQAKVFKEVCQLSGIILTKMDGTSKGG 303 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +I I + V LG+GE ++DL+ F Sbjct: 304 IVISIKDEFDLNVKLLGLGEKLDDLQEF 331 >gi|167751476|ref|ZP_02423603.1| hypothetical protein EUBSIR_02472 [Eubacterium siraeum DSM 15702] gi|167655284|gb|EDR99413.1| hypothetical protein EUBSIR_02472 [Eubacterium siraeum DSM 15702] gi|291530283|emb|CBK95868.1| signal recognition particle-docking protein FtsY [Eubacterium siraeum 70/3] Length = 301 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 127/298 (42%), Positives = 179/298 (60%), Gaps = 5/298 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + KL G +T L IT +I+S ++D+ EELE+ LI SDIG + I E Sbjct: 1 MGLFEKLKNGLKNTKDALASKITGVINSFTKIDEDFFEELEETLILSDIGAVTSANICEA 60 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVI 128 L + A + +V L+ K++ + + N +P VILV+GVNG GKTT I Sbjct: 61 LRKEVKATGTTDP---AEVKGLLKKIIAGILEGENELILDTKPTVILVIGVNGAGKTTTI 117 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ + +G KV++AA DTFR+AAI+QL++W R D + GSD AA+ ++A K Sbjct: 118 GKLAYNLKSSGKKVVVAAADTFRAAAIEQLEVWTQRAGVDIIKHSEGSDPAAVVFDAVKA 177 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ DV+I DTAGRLHN LM + K+ R++ P + L VLDATTGQNA+ Q Sbjct: 178 GIARDADVIICDTAGRLHNKKNLMDELKKIARIVNNNAPDSRVETLLVLDATTGQNAVNQ 237 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F A TG+++TK+DGTA+GG +IPI IPV +GVGE I+DL+PFV +D+ Sbjct: 238 ARLFKETADITGIVLTKLDGTAKGGIIIPIKEELGIPVKLVGVGEKIDDLQPFVPRDY 295 >gi|257061559|ref|YP_003139447.1| signal recognition particle-docking protein FtsY [Cyanothece sp. PCC 8802] gi|256591725|gb|ACV02612.1| signal recognition particle-docking protein FtsY [Cyanothece sp. PCC 8802] Length = 499 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 109/315 (34%), Positives = 188/315 (59%), Gaps = 6/315 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + +++E ++W+++L +G T L + I+ L+ E+E LL+++D+G+ Sbjct: 185 ENISAEEINWLKRLRQGLGKTRRGLVNQLKAIVGQGPLNQDAVMEIEALLLQADVGLEAT 244 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVVGV 119 I+ +L K + + ++ + + E++ ++L PL + N F+ ++ L+ GV Sbjct: 245 DYIINKLQNKLREESLPSEQAIEYLKEILREILDRPLQQVKNPGFAPEKDTLNIWLMTGV 304 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178 NG GKTT IGKL+ +G M+AA DTFR+AA++Q+K+W +RT+ + + +D Sbjct: 305 NGAGKTTTIGKLAHLSQKSGYSCMIAAADTFRAAAVEQVKVWGERTNTPVIANPGKNTDP 364 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++ AQ+++ ++L++DTAGRL N LM + K+ R++ + P A L VLD Sbjct: 365 AAVVFDGIAAAQSRQTELLLVDTAGRLQNKKNLMEELSKIRRIIDKKAPDAQVEALLVLD 424 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 AT GQN LRQ E+F A +G+++TK+DGTA+GG + I +P+ F+G GEGI DL Sbjct: 425 ATLGQNGLRQAEVFSESAKLSGVVLTKLDGTAKGGVALAIAQQLNLPIRFIGAGEGIEDL 484 Query: 299 EPFVAKDF-SAVITG 312 PF + +F A++ G Sbjct: 485 RPFSSYEFVEALLNG 499 >gi|218248495|ref|YP_002373866.1| signal recognition particle-docking protein FtsY [Cyanothece sp. PCC 8801] gi|218168973|gb|ACK67710.1| signal recognition particle-docking protein FtsY [Cyanothece sp. PCC 8801] Length = 499 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 109/315 (34%), Positives = 188/315 (59%), Gaps = 6/315 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + +++E ++W+++L +G T L + I+ L+ E+E LL+++D+G+ Sbjct: 185 ENISAEEINWLKRLRQGLGKTRRGLVNQLKAIVGQGPLNQDAVMEIEALLLQADVGLEAT 244 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVVGV 119 I+ +L K + + ++ + + E++ ++L PL + N F+ ++ L+ GV Sbjct: 245 DYIINKLQNKLREESLPSEQAIEYLKEILREILDRPLQQVKNPGFAPEKDTLNIWLMTGV 304 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178 NG GKTT IGKL+ +G M+AA DTFR+AA++Q+K+W +RT+ + + +D Sbjct: 305 NGAGKTTTIGKLAHLSQKSGYSCMIAAADTFRAAAVEQVKVWGERTNTPVIANPGKNTDP 364 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++ AQ+++ ++L++DTAGRL N LM + K+ R++ + P A L VLD Sbjct: 365 AAVVFDGIAAAQSRQTELLLVDTAGRLQNKKNLMEELSKIRRIIDKKAPDAQVEALLVLD 424 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 AT GQN LRQ E+F A +G+++TK+DGTA+GG + I +P+ F+G GEGI DL Sbjct: 425 ATLGQNGLRQAEVFSESAKLSGVVLTKLDGTAKGGVALAIAQQLNLPIRFIGAGEGIEDL 484 Query: 299 EPFVAKDF-SAVITG 312 PF + +F A++ G Sbjct: 485 RPFSSYEFVEALLNG 499 >gi|199597130|ref|ZP_03210562.1| Signal recognition particle GTPase [Lactobacillus rhamnosus HN001] gi|258508644|ref|YP_003171395.1| cell division protein signal recognition particle FtsY [Lactobacillus rhamnosus GG] gi|199591934|gb|EDZ00009.1| Signal recognition particle GTPase [Lactobacillus rhamnosus HN001] gi|257148571|emb|CAR87544.1| cell division protein, signal recognition particle FtsY [Lactobacillus rhamnosus GG] gi|259649950|dbj|BAI42112.1| signal recognition particle GTPase [Lactobacillus rhamnosus GG] Length = 331 Score = 189 bits (479), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 114/301 (37%), Positives = 174/301 (57%), Gaps = 11/301 (3%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73 K +G + E + + ++ R +D+ E+LE++LI SD+G A ++ +EL + Sbjct: 23 KYDEGLEKSRSSFGEKLNALFANFRTVDEDFFEDLEEMLIESDVGFETAVRLSDELREEV 82 Query: 74 --RYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTV 127 + AKD +V RV+ V +L+ M K + P V L VGVNG GKTT Sbjct: 83 KLKNAKDPKAVSRVI--VEKLVD-MYGEAGKGEDNQLHFAEEGPTVFLFVGVNGAGKTTT 139 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 +GKL+ ++ + G +V+L A DTFR+ AI QL+ W R V + G D AA+ ++ K Sbjct: 140 VGKLAHQLKEEGKRVLLVAADTFRAGAIQQLQEWGRRVEVPVVATNPGGDPAAVVFDGVK 199 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 +A+ + DV+++DTAGRL N LM + K+ RV+ R P AP VL VLDATTGQNAL Sbjct: 200 RAKDEGYDVVLVDTAGRLQNKVNLMNELNKIKRVIVRELPDAPQEVLLVLDATTGQNALN 259 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 Q + F+ TG+++TK+DG+ +GG ++ I +PV +G+GE ++DL+ F F Sbjct: 260 QAKEFNQTTQITGIVLTKLDGSGKGGIVLAIRNELHVPVKLVGLGEKMDDLQAFDPTKFV 319 Query: 308 A 308 A Sbjct: 320 A 320 >gi|313676112|ref|YP_004054108.1| signal recognition particle-docking protein ftsy [Marivirga tractuosa DSM 4126] gi|312942810|gb|ADR22000.1| signal recognition particle-docking protein FtsY [Marivirga tractuosa DSM 4126] Length = 319 Score = 189 bits (479), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 119/279 (42%), Positives = 173/279 (62%), Gaps = 8/279 (2%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELI 92 ++ ++D+ V +ELE++LI SD+GV KI++ + +R A+D + D + E I Sbjct: 34 VVGKSQVDEDVLDELEEILISSDLGVNTTVKIIDRI-EERVARDKYLGTSELDKILREEI 92 Query: 93 HKMLMPLSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 +L + DFS +P+V+LVVGVNGVGKTT IGKL+ + G KV+L A Sbjct: 93 AALLSENNTEDLKDFSLPENIKKPYVLLVVGVNGVGKTTTIGKLAAQYKKQGKKVILGAA 152 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DTFR+AA+DQLK+W +R V + +D A++A++A KQ ++ D++IIDTAGRLH Sbjct: 153 DTFRAAAVDQLKMWGERIEVPVVSHGMNTDPASVAFDAVKQGVQEEADIVIIDTAGRLHT 212 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 LM + K+ RV+++ APH VL VLD +TGQNA+ Q F T L +TK+D Sbjct: 213 KVNLMNELSKIKRVIQKFVSEAPHEVLLVLDGSTGQNAMIQAREFTKATEVTALAITKLD 272 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 GTA+GG +I I KIPV ++GVGE + DL+ F +F Sbjct: 273 GTAKGGVVIGISEEFKIPVKYIGVGEKVEDLQVFNKMEF 311 >gi|237805173|ref|YP_002889327.1| Cell Division Protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231273473|emb|CAX10389.1| Cell Division Protein [Chlamydia trachomatis B/TZ1A828/OT] Length = 284 Score = 189 bits (479), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 104/269 (38%), Positives = 151/269 (56%), Gaps = 7/269 (2%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLM 97 R L + E E LL D G + + EEL + + +V+ ++ +S++I K+ Sbjct: 15 RTLSSDLLEYAEVLLYEGDFGPKLTEAFCEELRQCKNPDERAVKELIRSFLSKIISKL-- 72 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P +P S RP LV+G NG GKTT + KL+ KV++ A DTFRSA +DQ Sbjct: 73 PQREPL----SVRPFSTLVLGTNGSGKTTTVAKLAHYYLSQNQKVLIVATDTFRSAGMDQ 128 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 ++ WA+ + F+ + G DAAA+A++ A A+ D +IIDT+GRLH ++ L+ + K Sbjct: 129 MRCWAETLNCGFISGKPGGDAAAIAFDGISAAVARDYDHVIIDTSGRLHTHTNLLKELQK 188 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + V + P APH L +DAT G N L QV++FH GLI TK++G+A+GG L Sbjct: 189 IATVCNKAFPGAPHETLMTIDATLGSNTLSQVQLFHEAVPINGLIFTKVEGSAKGGSLFR 248 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 I KIP F+G GE I+D EPF F Sbjct: 249 IADELKIPTRFVGYGETIHDFEPFAIDRF 277 >gi|118443376|ref|YP_878288.1| signal recognition particle-docking protein FtsY [Clostridium novyi NT] gi|118133832|gb|ABK60876.1| signal recognition particle-docking protein FtsY [Clostridium novyi NT] Length = 302 Score = 189 bits (479), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 120/297 (40%), Positives = 190/297 (63%), Gaps = 5/297 (1%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + KL G + T E ++++++ + ++D+ + EELE++LI +DIGV + ++E + Sbjct: 4 NLFNKLKDGLSKTKNNFTEKVSEVLNLAVKIDEDLFEELEEILITADIGVDTSLDVIERV 63 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIG 129 K + ++ + +Y + ++LM + N + + P +LV+GVNG GKTT IG Sbjct: 64 RVKVKERRITDPKEVYTC---LKEVLMEILNEDNKEEENITPKTVLVIGVNGAGKTTSIG 120 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 K+S ++ + G KV++AA DTFR+AAIDQL++W++R D + + GSD A++ ++A + A Sbjct: 121 KMSHRLKEDGYKVLMAAADTFRAAAIDQLEVWSNRAGVDIIRHQEGSDPASVVFDAIQAA 180 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+K DVLI DTAGRLHN LM + K+ R++ R + L VLD TTGQNAL+Q Sbjct: 181 KARKTDVLICDTAGRLHNKKNLMNELEKINRIIDREYGESKKETLLVLDGTTGQNALQQA 240 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F V G+++TK+DGTA+GG +I I IPV F+GVGEGI+DL+ F A+ F Sbjct: 241 KQFAEVCPIDGIVITKLDGTAKGGVIIAIKHQLNIPVKFIGVGEGIDDLQEFDAESF 297 >gi|269215482|ref|ZP_06159336.1| signal recognition particle-docking protein FtsY [Slackia exigua ATCC 700122] gi|269130969|gb|EEZ62044.1| signal recognition particle-docking protein FtsY [Slackia exigua ATCC 700122] Length = 304 Score = 189 bits (479), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 112/308 (36%), Positives = 174/308 (56%), Gaps = 13/308 (4%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 ++W ++ G + + KL+E I ++ +D+ E LE+ L+ SDIG A KI + Sbjct: 1 MAWFDRMKSGLSKSREKLQESINMLVFKGPEVDEDFWENLEETLVMSDIGYPAAFKISVD 60 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF-----NWDFSHRPHVILVVGVNGVGK 124 + +D + +R L D ++ ++ +++ F RP +L+VGVNG GK Sbjct: 61 M------RDAAQRRALPDAPAILEELSAQIARGFAVPEEGNPLDERPLCVLLVGVNGSGK 114 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT GK++ + G V+L A DTFR+AAI+QL+ WA R+ V E GSD A++ YE Sbjct: 115 TTTAGKMAAEAKGRGDTVVLGAADTFRAAAIEQLEEWARRSDVPIVERERGSDPASVCYE 174 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 +A+ D+ +IDTAGRLH + LM + K+ V+++ +VL V+DAT GQN Sbjct: 175 TLDEAERIGADLALIDTAGRLHTSPDLMRELQKVTSVVRKRCAWRVVTVL-VIDATAGQN 233 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 L Q + F G++MTK+DGTA+GG + I +P+ +GVGEGI+DL F A Sbjct: 234 GLTQAKRFDEALDLDGIVMTKLDGTAKGGIALAISYELGLPILKIGVGEGIDDLRDFDAL 293 Query: 305 DFSAVITG 312 D++ +TG Sbjct: 294 DYARALTG 301 >gi|58337571|ref|YP_194156.1| cell division protein [Lactobacillus acidophilus NCFM] gi|227904213|ref|ZP_04022018.1| signal recognition particle docking protein FtsY [Lactobacillus acidophilus ATCC 4796] gi|58254888|gb|AAV43125.1| cell division protein [Lactobacillus acidophilus NCFM] gi|227868232|gb|EEJ75653.1| signal recognition particle docking protein FtsY [Lactobacillus acidophilus ATCC 4796] Length = 431 Score = 189 bits (479), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 101/259 (38%), Positives = 153/259 (59%), Gaps = 5/259 (1%) Query: 54 IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 I SD+G A+++ EEL L ++D Q ++ + +L K + ++ Sbjct: 165 IESDVGYETAEQLTEELREEAKLQNAKSRDELKQVIVEKLVDLYDKGGNNKDEKLEYNSD 224 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +P+V L VGVNG GKTT IGKL+K+ D G V+LAA DTFR+ A++QL W R Sbjct: 225 DKPNVYLFVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLVEWGKRVDVP 284 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V + +D A++ Y+A ++A +KVD L++DTAGRL N LMA + K+ R +++L P Sbjct: 285 VVTGKEKADPASVVYDATERAIKEKVDYLLVDTAGRLQNKKNLMAELEKIQRTIQKLLPD 344 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P L VLD +TGQNAL Q + F TGL++TK+DG+++GG ++ I +PV Sbjct: 345 QPTETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMNLPVKL 404 Query: 289 LGVGEGINDLEPFVAKDFS 307 +G+GE DL F A +++ Sbjct: 405 VGLGEKPEDLADFDAANYA 423 >gi|319956140|ref|YP_004167403.1| signal recognition particle-docking protein ftsy [Nitratifractor salsuginis DSM 16511] gi|319418544|gb|ADV45654.1| signal recognition particle-docking protein FtsY [Nitratifractor salsuginis DSM 16511] Length = 291 Score = 189 bits (479), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 104/294 (35%), Positives = 166/294 (56%), Gaps = 15/294 (5%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 L K F T+ E I +++ ++ +EE E++L+ +D+ + ++++E L Sbjct: 5 LKKAFGKTN----EAIREVLPEKKTKIS-KEEFEEILLEADVDYELIERLLESL--PETI 57 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136 + L V + + + P ++ P V +++GVNG GKTT I KL+++ Sbjct: 58 TRIQAYNSLISVFQYRAEWIDP--------NAYHPFVEMIIGVNGAGKTTTIAKLARRYQ 109 Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196 G V+L AGDTFR+AAI+QL WA++ V + G D +A+ ++ + A AK VD Sbjct: 110 KEGKSVILGAGDTFRAAAIEQLSRWAEKLQVPIVATRQGHDPSAVVFDTIRSALAKGVDR 169 Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256 +IIDTAGRLH + L + KM+RV + P APH + +LD T G + + Q + F A+ Sbjct: 170 VIIDTAGRLHTQTNLAEELKKMVRVADKALPGAPHRKMLILDGTQGSSTVNQAKAFDAMI 229 Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 G G+I+TK+DGTA+GG ++ I K+P+YF+G GE DL PF A ++ I Sbjct: 230 GIDGIIITKLDGTAKGGSVLSIADQLKMPIYFIGTGEQPEDLIPFKANEYVNTI 283 >gi|253682407|ref|ZP_04863204.1| signal recognition particle-docking protein FtsY [Clostridium botulinum D str. 1873] gi|253562119|gb|EES91571.1| signal recognition particle-docking protein FtsY [Clostridium botulinum D str. 1873] Length = 304 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 121/296 (40%), Positives = 187/296 (63%), Gaps = 1/296 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + KL G A T E +++++ + ++D+ + EELE++LI +DIGV + ++++ + Sbjct: 4 NLFNKLKDGLAKTKNNFTEKVSEVLKLAVKIDEELFEELEEILITADIGVDTSLEVIDRV 63 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K K ++ + +YD + + ++ + P ILV+GVNG GKTT IGK Sbjct: 64 KDKVKEKRITDPKEVYDCLKEVLIEILTEENENKKEEESIPKTILVIGVNGAGKTTSIGK 123 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +S K+ + G KV++AA DTFR+AAIDQL++W++R D + + GSD A++ ++A + ++ Sbjct: 124 MSNKLKNQGHKVIMAAADTFRAAAIDQLEVWSNRAGVDIIRHQEGSDPASVVFDAIQASK 183 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+K DVLI DTAGRLHN LM + K+ R++ R A L VLD TTGQNAL+Q + Sbjct: 184 ARKADVLICDTAGRLHNKKNLMNELEKINRIIDREYSEANKQTLLVLDGTTGQNALQQAK 243 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F V G+++TK+DGTA+GG +I I IPV F+GVGEGI+DL+ F A+ F Sbjct: 244 QFAEVCPIDGIVITKLDGTAKGGVIIAIKHQLHIPVKFIGVGEGIDDLQEFNAESF 299 >gi|166154164|ref|YP_001654282.1| cell division protein [Chlamydia trachomatis 434/Bu] gi|166155039|ref|YP_001653294.1| cell division protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335408|ref|ZP_07223652.1| cell division protein [Chlamydia trachomatis L2tet1] gi|165930152|emb|CAP03636.1| Cell Division Protein [Chlamydia trachomatis 434/Bu] gi|165931027|emb|CAP06590.1| Cell Division Protein [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 284 Score = 188 bits (478), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 104/269 (38%), Positives = 151/269 (56%), Gaps = 7/269 (2%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLM 97 R L + E E LL D G + + EEL + + +V+ ++ +S++I K+ Sbjct: 15 RTLSSDLLEYAEVLLYEGDFGPKLTEAFCEELRRCKNPDERAVKELIRSFLSKIISKL-- 72 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P +P S RP LV+G NG GKTT + KL+ KV++ A DTFRSA +DQ Sbjct: 73 PQREPL----SVRPFSTLVLGTNGSGKTTTVAKLAHYYLSQNQKVLIVATDTFRSAGMDQ 128 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 ++ WA+ + F+ + G DAAA+A++ A A+ D +IIDT+GRLH ++ L+ + K Sbjct: 129 MRCWAETLNCGFISGKPGGDAAAIAFDGISAAVARDYDHVIIDTSGRLHTHTNLLKELQK 188 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + V + P APH L +DAT G N L QV++FH GLI TK++G+A+GG L Sbjct: 189 IATVCNKAFPGAPHETLMTIDATLGSNTLSQVQLFHEAVPINGLIFTKVEGSAKGGSLFR 248 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 I KIP F+G GE I+D EPF F Sbjct: 249 IADELKIPTRFVGYGETIHDFEPFAIDRF 277 >gi|163847286|ref|YP_001635330.1| signal recognition particle-docking protein FtsY [Chloroflexus aurantiacus J-10-fl] gi|222525130|ref|YP_002569601.1| signal recognition particle-docking protein FtsY [Chloroflexus sp. Y-400-fl] gi|163668575|gb|ABY34941.1| signal recognition particle-docking protein FtsY [Chloroflexus aurantiacus J-10-fl] gi|222449009|gb|ACM53275.1| signal recognition particle-docking protein FtsY [Chloroflexus sp. Y-400-fl] Length = 325 Score = 188 bits (478), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 111/267 (41%), Positives = 160/267 (59%), Gaps = 6/267 (2%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102 D + +ELE+ LI++D+G+ Q +V + + V R + E++ ++ Sbjct: 53 DELWDELEEALIQADVGLETTQYLVNRTIDRVNRHGVKKAR---EAREMLKAEMVRTFAE 109 Query: 103 F--NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLK 159 + + RP+VILVVGVNG GKTT+I KL+ + + G KV+LAAGDTFR+AA +QL+ Sbjct: 110 YAGQQRPNARPYVILVVGVNGAGKTTLIAKLAHRYKNRFGKKVLLAAGDTFRAAATEQLE 169 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 WA+R V G+DAAA+ Y+A A + VDVLIIDTAGRLH LM + K+ Sbjct: 170 TWAERAGVPCVSLGQGADAAAVVYKAIDAALEQDVDVLIIDTAGRLHAKYNLMQELEKIR 229 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 ++ R P APH + V+DATTGQN + Q + F AG T + +TKMDGTA+GG I Sbjct: 230 NIIGRKLPGAPHETILVIDATTGQNGVLQAKAFLKAAGVTDVAITKMDGTAKGGIAFAIA 289 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDF 306 + P+ ++G GE ++DL F A+ F Sbjct: 290 QDIERPIRYIGTGEKMDDLALFDAQTF 316 >gi|148272542|ref|YP_001222103.1| Signal recognition particle component [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830472|emb|CAN01407.1| Signal recognition particle component [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 291 Score = 188 bits (478), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 117/297 (39%), Positives = 169/297 (56%), Gaps = 14/297 (4%) Query: 22 ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK----RYAK 77 A T L + + + +D+ ++LE LI +D G V + +++L K R Sbjct: 3 ARTPWSLSGALRGMFAKPTIDETTWDDLETALITADFGPDVTEATIDDLRQKVERYRTTD 62 Query: 78 DVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136 +QR+L + + E + K L S RP VILVVGVNGVGKTT IGK +K + Sbjct: 63 PRDLQRMLRESIEERLAKHDPTLK------LSARPAVILVVGVNGVGKTTTIGKFAKFLR 116 Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQAKKVD 195 + G V++ A DTFR+AA+DQL WADR A+ V + G D A++A++ + A + Sbjct: 117 NYGRTVVVGAADTFRAAAVDQLATWADRAGAEIVRPQQPGQDPASVAFQTVEHAMRTGTE 176 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 ++IIDTAGRLH LM + K+ RV+++ P A VL VLDATTGQN L Q + F Sbjct: 177 MVIIDTAGRLHTKGGLMDELSKIRRVVEKQSPIA--EVLLVLDATTGQNGLAQAQAFIEH 234 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 G TGL++TK+DG+A+GG ++ + IP+ +G GEGI DL F F+ + G Sbjct: 235 GGVTGLVITKLDGSAKGGFILNVQERTGIPIKLIGQGEGIGDLTGFTPHVFAQNLVG 291 >gi|206602219|gb|EDZ38701.1| Cell division protein (FtsY) [Leptospirillum sp. Group II '5-way CG'] Length = 309 Score = 188 bits (478), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 115/294 (39%), Positives = 169/294 (57%), Gaps = 12/294 (4%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT- 72 +++L G T KL + + R EELEDLLI SD+G A ++ +L Sbjct: 4 LQRLGAGLKKTREKLGNNLAQLFGKER-SPQFYEELEDLLIISDVGPEQASLLIRDLKEW 62 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPF-----NWDFSHRPHVILVVGVNGVGKTTV 127 ++ + + + L + E I PL+ P +W +P VIL+VGVNGVGKTT Sbjct: 63 EKTSGNGTKGDPLLFLEERIASFF-PLNPPVWVEQPDW----KPVVILMVGVNGVGKTTT 117 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 GKL+ + G V+L A DTFR+AA+ QL++W ++ V + G+D AA+A++ K Sbjct: 118 TGKLAHRFQQEGKSVILGAADTFRAAAVQQLRLWGEKLEIPVVHQKEGADPAAVAFDTVK 177 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A A+K+DV IIDTAGRL LMA +GK+ ++KR P L VLD+T GQN + Sbjct: 178 AALARKMDVAIIDTAGRLQTKHNLMAELGKIHGLVKREMEDRPFETLIVLDSTLGQNTVS 237 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 Q+E F +G+I+TK+DGT++GG ++ + +PV F+GVGEG +DL F Sbjct: 238 QMEHFRKAIPVSGMILTKLDGTSKGGIVVSLARKFHLPVRFVGVGEGKDDLVEF 291 >gi|218132446|ref|ZP_03461250.1| hypothetical protein BACPEC_00305 [Bacteroides pectinophilus ATCC 43243] gi|217992556|gb|EEC58558.1| hypothetical protein BACPEC_00305 [Bacteroides pectinophilus ATCC 43243] Length = 309 Score = 188 bits (478), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 130/305 (42%), Positives = 182/305 (59%), Gaps = 10/305 (3%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + KL +G T + G+ I S +DD EELE+ +I DIGV ++I+EE Sbjct: 1 MGLFSKLKEGLTKTRDHITSGMDAIFSGFSSIDDDFYEELEETMIMGDIGVCATEEILEE 60 Query: 70 LLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 L + + V +++L D K M L + +DF +R +I+++GVNGVGKT Sbjct: 61 LKERVHENKVKNPADCKQLLIDTI----KEKMDLGEN-AYDFENRKSIIILIGVNGVGKT 115 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T GK++ + G KV+LAA DTFR+AAI+QL WA+R+ D + GSD AA+ ++A Sbjct: 116 TSAGKIAAHLRGQGRKVILAAADTFRAAAIEQLTEWANRSQCDIIAQSEGSDPAAVIFDA 175 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+A+K DVL+ DTAGRLHN LM + K+ RV++R A L VLDATTGQNA Sbjct: 176 VAAAKARKADVLLCDTAGRLHNKKNLMEELRKIDRVIEREYADAYRENLLVLDATTGQNA 235 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L Q+ F V TG+I+TKMDGTA+GG I I +PV ++GVGE I DL+ F ++D Sbjct: 236 LSQLREFKDVMDITGIILTKMDGTAKGGIAIAIQTEFGVPVKYIGVGEHIEDLQKFNSED 295 Query: 306 FSAVI 310 + I Sbjct: 296 YVNAI 300 >gi|291522185|emb|CBK80478.1| signal recognition particle-docking protein FtsY [Coprococcus catus GD/7] Length = 312 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 123/300 (41%), Positives = 181/300 (60%), Gaps = 8/300 (2%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64 ++ E + +L +G T + G I S +D+ EELE++L+ +D+G+ + Sbjct: 1 MSEEKKGFFSRLVEGLTKTRNNIMSGFDAIFSGFSNIDEDFYEELEEVLVMADLGIHTTE 60 Query: 65 KIVEELLTKRYAKDVSV---QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 I+EEL KR K+ + Q +++ I + + + + F H+ V+LV+GVNG Sbjct: 61 NIIEEL--KRKVKEQHIKEPQACKQLLADTIKEQMRVDEEAYQ--FEHQTSVVLVIGVNG 116 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT IGKL+ + AG KV+LAA DTFR+AAI+QL WA R D + + GSD A++ Sbjct: 117 VGKTTTIGKLAGQYKKAGKKVVLAAADTFRAAAIEQLTEWAHRAGVDIIAGQEGSDPASV 176 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 Y+A A+A+K D+L+ DTAGRLHN LM + K+ R+++R P A L VLD TT Sbjct: 177 IYDAIAAAKARKADILLCDTAGRLHNKKNLMEELKKINRIIEREYPEAYRENLIVLDGTT 236 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL Q + F A TG+++TK+DGTA+GG I I +PV ++G+GE I DL+ F Sbjct: 237 GQNALVQAKQFKETADITGIVLTKLDGTAKGGIAIAIQAELGVPVKYIGIGEKIEDLQKF 296 >gi|300814487|ref|ZP_07094748.1| signal recognition particle-docking protein FtsY [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511405|gb|EFK38644.1| signal recognition particle-docking protein FtsY [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 421 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 111/262 (42%), Positives = 161/262 (61%), Gaps = 3/262 (1%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-R 110 +LI +D+G+ K+++ L + ++ + D+ + K LM ++ N S Sbjct: 162 ILISADVGMDTTMKLIDNLRETIIKEKINDPSKVKDILKSETKKLM--NEELNKGISDVS 219 Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P +ILVVGVNGVGKTT IGKL+K+ D G V++AA DTFR+AAIDQLK W R + D + Sbjct: 220 PSIILVVGVNGVGKTTTIGKLAKRYKDEGKSVLIAAADTFRAAAIDQLKEWGSRVNVDII 279 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 G D AA+ ++A A+++ D+LI+DTAGRLHN + LM + K+ R++ + P A Sbjct: 280 SHSEGQDPAAVVFDAITAAKSRNADILIVDTAGRLHNKANLMKELEKINRIIDKKYPEAY 339 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 L VLDATTGQNA+ Q + F TG+ +TK+DGTA+GG +I + +IP+ +G Sbjct: 340 RETLLVLDATTGQNAMNQAKTFKEAVNITGIALTKLDGTAKGGVVIALQSELQIPIKLVG 399 Query: 291 VGEGINDLEPFVAKDFSAVITG 312 VGEGI DL+ F +F I G Sbjct: 400 VGEGIYDLQDFNLDNFLQGIFG 421 >gi|121603800|ref|YP_981129.1| signal recognition particle-docking protein FtsY [Polaromonas naphthalenivorans CJ2] gi|120592769|gb|ABM36208.1| signal recognition particle-docking protein FtsY [Polaromonas naphthalenivorans CJ2] Length = 390 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 125/321 (38%), Positives = 188/321 (58%), Gaps = 28/321 (8%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 E W KL +G T I+ + + ++D+ + E+LE L+ +D GV+ + ++ Sbjct: 81 ERQRWFGKLQEGLRKTG----SSISTVFTGSQIDEQLYEDLETALLMADTGVSATEHLLA 136 Query: 69 ELLTKRYAKD------VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 ++ +R KD V+V+ L E I +L PL +P P VI+V GVNG Sbjct: 137 DV--RRRVKDGGMTHPVAVRNALI---ESITVLLKPLERPLVIG-EFVPTVIMVTGVNGA 190 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL++ +++ G V+LAA DTFR+AA +QL +WADR + + V E G D AA++ Sbjct: 191 GKTTSIGKLTRHLANEGASVLLAAADTFRAAAREQLSVWADRNTVEIVSQENG-DPAAVS 249 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A +A+ DV+++DTAGRL LM + K+ RV+++ D APH VL V+D TG Sbjct: 250 FDAVTAGKARGKDVVLVDTAGRLPTQLHLMEELRKIKRVVQKADATAPHEVLLVIDGNTG 309 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK-----------IPVYFLGV 291 QNAL QV+ F TGL++TK+DGTA+GG L I + + + VYF+GV Sbjct: 310 QNALAQVKAFDDTLQLTGLVVTKLDGTAKGGVLAAIALWARERAKASPGLRPVAVYFIGV 369 Query: 292 GEGINDLEPFVAKDFSAVITG 312 GE + DLE F A++F+ + G Sbjct: 370 GEKLEDLETFNAREFAQALLG 390 >gi|95929906|ref|ZP_01312647.1| signal recognition particle-docking protein FtsY [Desulfuromonas acetoxidans DSM 684] gi|95134202|gb|EAT15860.1| signal recognition particle-docking protein FtsY [Desulfuromonas acetoxidans DSM 684] Length = 429 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 126/304 (41%), Positives = 185/304 (60%), Gaps = 3/304 (0%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVA 63 + E +S ++ G + TS L I + + + ++ V EELE++LI +D G+ Sbjct: 119 EAPPEPVSLYDRMRSGLSKTSSALIGRIDSLFTGASTVNQDVIEELEEILITADFGMKTT 178 Query: 64 QKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 Q +V+ + + K+ ++ + + I ++L ++P D H P V++V+GVNGV Sbjct: 179 QMLVDGFQQRAKELKETDADQLRDLLKDEIRRLLDVNAEPLALD-RHSPFVLMVIGVNGV 237 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+++ S G KV+L A DTFR+AA DQL++W +R+ + + G+D AA+A Sbjct: 238 GKTTTIGKLAQQFSSQGKKVVLGAADTFRAAAADQLEVWGERSGVKVIRHDEGADPAAVA 297 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A K A A+ D+LI+DTAGRLH LM + K+ RVL R APH L VLDATTG Sbjct: 298 FDAAKAAVARNADILILDTAGRLHTKVNLMEEMKKLYRVLGREIGDAPHETLLVLDATTG 357 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL Q +F G TG+ +TK+DGTA+GG + I +PV F+GVGEGI DL PF Sbjct: 358 QNALVQARLFKEAVGVTGIALTKLDGTAKGGMAVAIGAELGLPVRFVGVGEGIEDLRPFD 417 Query: 303 AKDF 306 + F Sbjct: 418 PQMF 421 >gi|116495087|ref|YP_806821.1| Signal recognition particle GTPase [Lactobacillus casei ATCC 334] gi|227534898|ref|ZP_03964947.1| signal recognition particle docking protein FtsY [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|116105237|gb|ABJ70379.1| signal recognition particle-docking protein FtsY [Lactobacillus casei ATCC 334] gi|227187654|gb|EEI67721.1| signal recognition particle docking protein FtsY [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 331 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 112/305 (36%), Positives = 174/305 (57%), Gaps = 17/305 (5%) Query: 15 RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 K +G + E + + ++ R +D+ + LE++LI SD+G A K+ ++L + Sbjct: 22 NKYDEGLEKSRSSFGEKLNALFANFRSVDEDFFDNLEEMLIESDVGFETAVKLSDDLREE 81 Query: 74 ---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHR-PHVILVVGVNGVG 123 + AKD VS +I + L+ + D F+ P V L VGVNG G Sbjct: 82 VKLKNAKDPKA------VSRVIVEKLVDMYGDAGKDEDNALHFAESGPSVFLFVGVNGAG 135 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT +GKL+ ++ + G +V+L A DTFR+ AI QL+ W R V ++ G D AA+ + Sbjct: 136 KTTTVGKLAHQLKEEGKRVLLVAADTFRAGAIQQLQEWGRRVDVPVVATKEGGDPAAVVF 195 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 + K+A+ ++ DV+++DTAGRL N LM + K+ RV+ R P AP VL VLDATTGQ Sbjct: 196 DGVKRAKDEQFDVVLVDTAGRLQNKVNLMNELNKIKRVIVRELPDAPQEVLLVLDATTGQ 255 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NAL Q + F+ TG+++TK+DG+ +GG ++ I +PV +G+GE ++DL+ F Sbjct: 256 NALNQAKEFNQTTKITGIVLTKLDGSGKGGIVLAIRNELHVPVKLVGLGEKMDDLQAFDP 315 Query: 304 KDFSA 308 F A Sbjct: 316 TKFVA 320 >gi|67925131|ref|ZP_00518505.1| Cell division transporter substrate-binding protein FtsY [Crocosphaera watsonii WH 8501] gi|67853025|gb|EAM48410.1| Cell division transporter substrate-binding protein FtsY [Crocosphaera watsonii WH 8501] Length = 457 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 109/306 (35%), Positives = 181/306 (59%), Gaps = 5/306 (1%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 V+ E ++W+++L +G + L L + I+ L++ E+E LL+++D G+ Sbjct: 145 VSQEEINWLKRLRQGLGKSRLGLVNQLKSIVGQGPLNEDAVMEIEALLLQADTGLEATDY 204 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVI---LVVGVNG 121 I+ L K + + ++ L + ++ ++L PL K N F+ V+ L+ GVNG Sbjct: 205 IISTLQNKLLEEALPPEQALEYLKSILREILDRPLQKVVNPGFAPEKDVLNIWLLTGVNG 264 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180 GKTT IGKLS +G ++AA DTFR+AA+ Q+++W +RT+ + + +D AA Sbjct: 265 AGKTTTIGKLSHLAQQSGYNCIIAAADTFRAAAVQQVQVWGERTNTPVIANPGKNTDPAA 324 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++ AQA++ D+L++DTAGRL N LMA + K+ R++ + A L VLDAT Sbjct: 325 VVFDGISAAQARQADLLLVDTAGRLQNKKNLMAELAKIRRIIDKKAEKAQVESLLVLDAT 384 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQN LRQ ++F A +G+++TK+DG+A+GG + + +P+ F+GVGEGI DL P Sbjct: 385 LGQNGLRQAQVFSEAANLSGVVLTKLDGSAKGGVALAVAKQLDLPIRFIGVGEGIEDLRP 444 Query: 301 FVAKDF 306 F + +F Sbjct: 445 FSSYEF 450 >gi|191638591|ref|YP_001987757.1| Signal recognition particle-docking protein FtsY [Lactobacillus casei BL23] gi|190712893|emb|CAQ66899.1| Signal recognition particle-docking protein FtsY [Lactobacillus casei BL23] gi|327382633|gb|AEA54109.1| Signal recognition particle-docking protein FtsY [Lactobacillus casei LC2W] gi|327385827|gb|AEA57301.1| Signal recognition particle-docking protein FtsY [Lactobacillus casei BD-II] Length = 331 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 110/302 (36%), Positives = 173/302 (57%), Gaps = 11/302 (3%) Query: 15 RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 K +G + E + + ++ R +D+ + LE++LI SD+G A K+ ++L + Sbjct: 22 NKYDEGLEKSRSSFGEKLNALFANFRSVDEDFFDNLEEMLIESDVGFETAVKLSDDLREE 81 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHR-PHVILVVGVNGVGKTT 126 K+ + VS +I + L+ + D F+ P V L VGVNG GKTT Sbjct: 82 VKLKNAKDPKA---VSHVIVEKLVDMYGDAGKDEDNALHFAESGPSVFLFVGVNGAGKTT 138 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 +GKL+ ++ + G +V+L A DTFR+ AI QL+ W R V ++ G D AA+ ++ Sbjct: 139 TVGKLAHQLKEEGKRVLLVAADTFRAGAIQQLQEWGRRVDVPVVATKEGGDPAAVVFDGV 198 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 K+A+ ++ DV+++DTAGRL N LM + K+ RV+ R P AP VL VLDATTGQNAL Sbjct: 199 KRAKDEQFDVVLVDTAGRLQNKVNLMNELNKIKRVIVRELPDAPQEVLLVLDATTGQNAL 258 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q + F+ TG+++TK+DG+ +GG ++ I +PV +G+GE ++DL+ F F Sbjct: 259 NQAKEFNQTTKITGIVLTKLDGSGKGGIVLAIRNELHVPVKLVGLGEKMDDLQAFDPTKF 318 Query: 307 SA 308 A Sbjct: 319 VA 320 >gi|149924993|ref|ZP_01913317.1| signal recognition particle-docking protein FtsY [Plesiocystis pacifica SIR-1] gi|149814140|gb|EDM73759.1| signal recognition particle-docking protein FtsY [Plesiocystis pacifica SIR-1] Length = 592 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 104/301 (34%), Positives = 179/301 (59%), Gaps = 12/301 (3%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 K +GF + +L +G ++ D +++++E++L +DIG A+ ++E + ++ Sbjct: 286 KTKRGFIAKLARLFKG------KPKVSDDLKDDIEEVLFTADIGARTAETLLESVTSELD 339 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K+V+ +++V ++ + P ++ P+V+L++GVNGVGKTT +GKL+ + Sbjct: 340 KKEVADPDAVWEVIRRKALDILDIDAPEIDYTPDPGPYVLLMIGVNGVGKTTTLGKLAAR 399 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 +AG K +L AGDTFR+AA +QL++WA R D + +D +++ ++ + + + Sbjct: 400 HVEAGRKTLLVAGDTFRAAAGEQLEVWARRVGCDIHLGKENADPSSVLFDGITRGRDEGY 459 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVL-----KRLDPHAPHSVLQVLDATTGQNALRQV 249 D+++ DTAGRLH LMA + KM R K D PH + VLDAT GQNAL Q Sbjct: 460 DIVLCDTAGRLHTRKELMAELAKMGRAATKALSKGRDEVEPHDIFLVLDATIGQNALAQA 519 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 +MF +GL++TK+DGTA+GG ++ +V KIP+ ++GVGE ++DL F + + V Sbjct: 520 QMFKETMAFSGLVLTKLDGTAKGGVVLGVVDELKIPIRYIGVGEAVDDLRRFDPEAYCEV 579 Query: 310 I 310 + Sbjct: 580 L 580 >gi|169335336|ref|ZP_02862529.1| hypothetical protein ANASTE_01748 [Anaerofustis stercorihominis DSM 17244] gi|169258074|gb|EDS72040.1| hypothetical protein ANASTE_01748 [Anaerofustis stercorihominis DSM 17244] Length = 298 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 116/299 (38%), Positives = 175/299 (58%), Gaps = 8/299 (2%) Query: 15 RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K KG T L + D+ SS ++DD + EEL ++LI SDI V+++I+E + Sbjct: 4 EKYNKGLDKTKKSLLSKLKDVFSSNKIDDDLYEELIEVLILSDIPFNVSEEIIENVKENA 63 Query: 75 YAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKL 131 KDV LYD+ E+ +++ + L WD +P +IL +GVNG GKTT I KL Sbjct: 64 TKKDVKDINKLYDLIKDEIRNRLNLNL-----WDKEIKKPALILFIGVNGAGKTTTIAKL 118 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K KV+LAA DTFR+AA +QL WA+R + V S G D A++ Y+ A+A Sbjct: 119 ANKFLKEDKKVILAAADTFRAAASEQLATWAERLNVPIVKSSQGQDPASVIYDCLDSAKA 178 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K +D+++ D+AGRL N LM + K+ RV + + VLDA GQN++ Q E Sbjct: 179 KDMDIILADSAGRLQNKKNLMDELNKIYRVCDKFKGDYNLYTVLVLDAGAGQNSVIQAES 238 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ A G+IMTK+DG+A+GG ++ + +K P++++G+GEG++DLE F +F I Sbjct: 239 FNESAKVDGIIMTKLDGSAKGGVIVSLAGDNKPPMWYIGLGEGLDDLEEFDVDNFVDAI 297 >gi|327183816|gb|AEA32263.1| signal recognition particle-docking protein FtsY [Lactobacillus amylovorus GRL 1118] Length = 439 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 100/259 (38%), Positives = 154/259 (59%), Gaps = 5/259 (1%) Query: 54 IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 I SD+G A+++ +EL L ++D Q ++ + +L + + +D Sbjct: 173 IESDVGFETAEQLTDELREEAKLQNAKSRDDLKQVIVEKLVDLYDQGGQGKDEKLAYDPD 232 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +P+V L VGVNG GKTT IGKL+K+ D G V+LAA DTFR+ A++QL+ W R Sbjct: 233 AKPNVYLFVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLEEWGKRVGVP 292 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V + +D A++ Y+A ++A ++ D L++DTAGRL N LMA + K+ R +K+L P Sbjct: 293 VVTGKEKADPASVVYDATERAIKEQADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLPE 352 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P L VLD +TGQNAL Q + F TGL++TK+DG+++GG ++ I K+PV Sbjct: 353 QPAETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMKLPVKL 412 Query: 289 LGVGEGINDLEPFVAKDFS 307 +G+GE DL F A +++ Sbjct: 413 VGLGEKAEDLADFDAANYA 431 >gi|325957093|ref|YP_004292505.1| signal recognition particle-docking protein FtsY [Lactobacillus acidophilus 30SC] gi|325333658|gb|ADZ07566.1| signal recognition particle-docking protein FtsY [Lactobacillus acidophilus 30SC] Length = 439 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 100/259 (38%), Positives = 154/259 (59%), Gaps = 5/259 (1%) Query: 54 IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 I SD+G A+++ +EL L ++D Q ++ + +L + + +D Sbjct: 173 IESDVGFETAEQLTDELREEAKLQNAKSRDDLKQVIVEKLVDLYDQGGQGKDEKLAYDPD 232 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +P+V L VGVNG GKTT IGKL+K+ D G V+LAA DTFR+ A++QL+ W R Sbjct: 233 AKPNVYLFVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLEEWGKRVGVP 292 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V + +D A++ Y+A ++A ++ D L++DTAGRL N LMA + K+ R +K+L P Sbjct: 293 VVTGKEKADPASVVYDATERAIKEQADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLPE 352 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P L VLD +TGQNAL Q + F TGL++TK+DG+++GG ++ I K+PV Sbjct: 353 QPAETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMKLPVKL 412 Query: 289 LGVGEGINDLEPFVAKDFS 307 +G+GE DL F A +++ Sbjct: 413 VGLGEKAEDLADFDAANYA 431 >gi|296436375|gb|ADH18549.1| Cell Division Protein [Chlamydia trachomatis G/9768] gi|296438234|gb|ADH20395.1| Cell Division Protein [Chlamydia trachomatis G/11074] gi|297140735|gb|ADH97493.1| Cell Division Protein [Chlamydia trachomatis G/9301] Length = 284 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 103/269 (38%), Positives = 151/269 (56%), Gaps = 7/269 (2%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLM 97 + L + E E LL D G + + EEL + + +V+ ++ +S++I K+ Sbjct: 15 KTLSSDLLEYAEVLLYEGDFGPKLTEAFCEELRRCKNPDERAVKELIRSFLSKIISKL-- 72 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P +P S RP LV+G NG GKTT + KL+ KV++ A DTFRSA +DQ Sbjct: 73 PQREPL----SVRPFSTLVLGTNGSGKTTTVAKLAHYYLSQNQKVLIVATDTFRSAGMDQ 128 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 ++ WA+ + F+ + G DAAA+A++ A A+ D +IIDT+GRLH ++ L+ + K Sbjct: 129 MRCWAETLNCGFISGKPGGDAAAIAFDGISAAVARDYDHVIIDTSGRLHTHTNLLKELQK 188 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + V + P APH L +DAT G N L QV++FH GLI TK++G+A+GG L Sbjct: 189 IANVCNKAFPGAPHETLMTIDATLGSNTLSQVQLFHEAVPINGLIFTKVEGSAKGGSLFR 248 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 I KIP F+G GE I+D EPF F Sbjct: 249 IADELKIPTRFVGYGETIHDFEPFAIDRF 277 >gi|323466307|gb|ADX69994.1| Cell division protein [Lactobacillus helveticus H10] Length = 272 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 102/266 (38%), Positives = 158/266 (59%), Gaps = 9/266 (3%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN---- 104 +EDLLI SD+G A+++++EL + ++ + L V ++ K++ K N Sbjct: 1 MEDLLIESDVGYETAEQLIDELREEAKLQNAKSRDDLKKV--IVEKLVDLYDKDGNSEDE 58 Query: 105 ---WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 + +P+V L VGVNG GKTT IGKL+K+ D G V++AA DTFR+ A++QL W Sbjct: 59 KLIYHPEDKPNVYLFVGVNGAGKTTTIGKLAKRFKDEGKSVIMAAADTFRAGAVEQLVEW 118 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 R V + +D A++ Y+A ++A + D L++DTAGRL N LMA + K+ R+ Sbjct: 119 GKRVDVPVVTGKEKADPASVVYDATERAIKENADYLLVDTAGRLQNKKNLMAELEKIQRI 178 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 +K+L P P L VLD +TGQNAL Q + F TGL++TK+DG+++GG ++ I Sbjct: 179 IKKLLPDQPTETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNE 238 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFS 307 +PV +G+GE DL F A +++ Sbjct: 239 MNLPVKLVGLGEKAEDLADFDAANYA 264 >gi|239631965|ref|ZP_04674996.1| signal recognition particle-docking protein FtsY [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066651|ref|YP_003788674.1| signal recognition particle GTPase [Lactobacillus casei str. Zhang] gi|239526430|gb|EEQ65431.1| signal recognition particle-docking protein FtsY [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439058|gb|ADK18824.1| Signal recognition particle GTPase [Lactobacillus casei str. Zhang] Length = 331 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 110/301 (36%), Positives = 173/301 (57%), Gaps = 11/301 (3%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 K +G + E + + ++ R +D+ + LE++LI SD+G A K+ ++L + Sbjct: 23 KYDEGLEKSRSSFGEKLNALFANFRSVDEDFFDNLEEMLIESDVGFETAVKLSDDLREEV 82 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHR-PHVILVVGVNGVGKTTV 127 K+ + VS +I + L+ + D F+ P V L VGVNG GKTT Sbjct: 83 KLKNAKDPKA---VSRVIVEKLVDMYGDAGKDEDNALHFAESGPSVFLFVGVNGAGKTTT 139 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 +GKL+ ++ + G +V+L A DTFR+ AI QL+ W R V ++ G D AA+ ++ K Sbjct: 140 VGKLAHQLREEGKRVLLVAADTFRAGAIQQLQEWGRRVDVPVVATKEGGDPAAVVFDGVK 199 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 +A+ ++ DV+++DTAGRL N LM + K+ RV+ R P AP VL VLDATTGQNAL Sbjct: 200 RAKDEQFDVVLVDTAGRLQNKVNLMNELNKIKRVIVRELPDAPQEVLLVLDATTGQNALN 259 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 Q + F+ TG+++TK+DG+ +GG ++ I +PV +G+GE ++DL+ F F Sbjct: 260 QAKEFNQTTKITGIVLTKLDGSGKGGIVLAIRNELHVPVKLVGLGEKMDDLQAFDPTKFV 319 Query: 308 A 308 A Sbjct: 320 A 320 >gi|330443811|ref|YP_004376797.1| signal recognition particle-docking protein FtsY [Chlamydophila pecorum E58] gi|328806921|gb|AEB41094.1| signal recognition particle-docking protein FtsY [Chlamydophila pecorum E58] Length = 286 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 101/258 (39%), Positives = 150/258 (58%), Gaps = 11/258 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKML--MPLSKPF 103 E E L +D G ++ EEL ++ R AK+ + + L+ + L +PLS+P Sbjct: 23 EYAEKLFYEADFG----SELTEELCSRLRKAKNPDKATIKELIIALLRETLQQLPLSRPV 78 Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 S P V L++G NG GKTT + KL+ KV++ A DTFR+A IDQ++ WA+ Sbjct: 79 ----SSSPQVFLILGSNGSGKTTTVAKLAHFYQKQSQKVLIVATDTFRAAGIDQMRCWAE 134 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + + FV + G D AA+AY+ + A A+ D +IIDT+GRLH ++ LM + K++ V Sbjct: 135 KLNCGFVSGKSGGDPAAIAYDGIQAAIARDCDKVIIDTSGRLHTHTNLMKELSKIVTVCN 194 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 + P APH +L LDAT G N L Q + F ++A +G+I+TK DG+A+GG L I K Sbjct: 195 KALPGAPHEILMTLDATLGGNTLEQTQAFLSIAPVSGIILTKADGSAKGGTLFRIAKCLK 254 Query: 284 IPVYFLGVGEGINDLEPF 301 IP F+G GE + D + F Sbjct: 255 IPTNFIGYGESMEDFQEF 272 >gi|229552450|ref|ZP_04441175.1| signal recognition particle docking protein FtsY [Lactobacillus rhamnosus LMS2-1] gi|258539821|ref|YP_003174320.1| cell division protein signal recognition particle FtsY [Lactobacillus rhamnosus Lc 705] gi|229314187|gb|EEN80160.1| signal recognition particle docking protein FtsY [Lactobacillus rhamnosus LMS2-1] gi|257151497|emb|CAR90469.1| cell division protein, signal recognition particle FtsY [Lactobacillus rhamnosus Lc 705] Length = 331 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 113/301 (37%), Positives = 174/301 (57%), Gaps = 11/301 (3%) Query: 16 KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73 K +G + E + + ++ R +D+ ++LE++LI SD+G A ++ +EL + Sbjct: 23 KYDEGLEKSRSSFGEKLNALFANFRTVDEDFFDDLEEMLIESDVGFETAVRLSDELREEV 82 Query: 74 --RYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTV 127 + AKD +V RV+ V +L+ M K + P V L VGVNG GKTT Sbjct: 83 KLKNAKDPKAVSRVI--VEKLVD-MYGEAGKGEDNQLHFAEEGPTVFLFVGVNGAGKTTT 139 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 +GKL+ ++ + G +V+L A DTFR+ AI QL+ W R V + G D AA+ ++ K Sbjct: 140 VGKLAHQLKEEGKRVLLVAADTFRAGAIQQLQEWGRRVEVPVVATNPGGDPAAVVFDGVK 199 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 +A+ + DV+++DTAGRL N LM + K+ RV+ R P AP VL VLDATTGQNAL Sbjct: 200 RAKDEGYDVVLVDTAGRLQNKVNLMNELNKIKRVIVRELPDAPQEVLLVLDATTGQNALN 259 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 Q + F+ TG+++TK+DG+ +GG ++ I +PV +G+GE ++DL+ F F Sbjct: 260 QAKEFNQTTQITGIVLTKLDGSGKGGIVLAIRNELHVPVKLVGLGEKMDDLQAFDPTKFV 319 Query: 308 A 308 A Sbjct: 320 A 320 >gi|139436970|ref|ZP_01771130.1| Hypothetical protein COLAER_00103 [Collinsella aerofaciens ATCC 25986] gi|133776617|gb|EBA40437.1| Hypothetical protein COLAER_00103 [Collinsella aerofaciens ATCC 25986] Length = 305 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 100/278 (35%), Positives = 165/278 (59%), Gaps = 9/278 (3%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99 +D+ E+LED L+ D+G VA ++ ++L K++ + ++ ++E + + +P+ Sbjct: 28 VDEDFWEDLEDTLVMGDMGAEVAIQVSDDLRDAAAKKNLKTAPQLRRALAEQLEQHFVPI 87 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 + FS P +L VG+NG GKTT +GK++ M+ G V++ + DTFR+AAI+QL Sbjct: 88 ERD---PFSDTPSCVLFVGINGAGKTTTVGKIASAMAARGKNVVIGSADTFRAAAIEQLD 144 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 +W R + + GSD A++ Y+ +A + D+++IDTAGRLH + LM + K++ Sbjct: 145 VWGQRAGVPVIKRDRGSDPASVCYDVLDEADKRGSDLVLIDTAGRLHTSPELMRELAKVV 204 Query: 220 RVLKRLDPH-----APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 V ++ + P SV+ V+DA TGQN L Q F+ G G+IMTK+DGTA+GG Sbjct: 205 NVTRKRAANMAAGPMPVSVVLVIDAATGQNGLNQALEFNEALGLDGIIMTKLDGTAKGGI 264 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + + K+P+ +GVGE ++DL+ F AKDF + G Sbjct: 265 AMAVAEKLKLPILRVGVGEQVDDLQEFNAKDFCRALVG 302 >gi|168188030|ref|ZP_02622665.1| signal recognition particle-docking protein FtsY [Clostridium botulinum C str. Eklund] gi|169294126|gb|EDS76259.1| signal recognition particle-docking protein FtsY [Clostridium botulinum C str. Eklund] Length = 302 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 120/296 (40%), Positives = 190/296 (64%), Gaps = 3/296 (1%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + KL G + T E ++++++ + ++D+ + EELE++LI +DIGV + +++ + Sbjct: 4 NLFNKLKDGLSKTKNNFTEKVSEVLNLAVKIDEDLFEELEEILITADIGVDTSLDVIDRV 63 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K K ++ + +Y S L ++ L++ + + P +LV+GVNG GKTT IGK Sbjct: 64 KIKVKEKRITDPKEVY--SCLKEVLIEILNEENKVEENITPKTVLVIGVNGAGKTTSIGK 121 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +S ++ + G KV++AA DTFR+AAIDQL++W++R D + + GSD A++ ++A + A+ Sbjct: 122 MSHRLKEDGYKVLMAAADTFRAAAIDQLEVWSNRAGVDIIRHQEGSDPASVVFDAIQAAK 181 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+K DVLI DTAGRLHN LM + K+ R++ R + L VLD TTGQNAL+Q + Sbjct: 182 ARKTDVLICDTAGRLHNKKNLMNELEKINRIIDREYGESKKETLLVLDGTTGQNALQQAK 241 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F V G+++TK+DGTA+GG +I I IPV F+GVGEGI+DL+ F A+ F Sbjct: 242 QFAEVCPIDGIVITKLDGTAKGGVIIAIKHQLNIPVKFIGVGEGIDDLQEFDAESF 297 >gi|15605555|ref|NP_220341.1| cell division protein FtsY [Chlamydia trachomatis D/UW-3/CX] gi|76789565|ref|YP_328651.1| hypothetical protein CTA_0894 [Chlamydia trachomatis A/HAR-13] gi|237803252|ref|YP_002888446.1| Cell Division Protein [Chlamydia trachomatis B/Jali20/OT] gi|255311660|ref|ZP_05354230.1| Cell Division Protein [Chlamydia trachomatis 6276] gi|255317961|ref|ZP_05359207.1| Cell Division Protein [Chlamydia trachomatis 6276s] gi|3329289|gb|AAC68417.1| Cell Division Protein FtsY [Chlamydia trachomatis D/UW-3/CX] gi|76168095|gb|AAX51103.1| FtsY [Chlamydia trachomatis A/HAR-13] gi|231274486|emb|CAX11282.1| Cell Division Protein [Chlamydia trachomatis B/Jali20/OT] gi|296437306|gb|ADH19476.1| Cell Division Protein [Chlamydia trachomatis G/11222] gi|297748949|gb|ADI51495.1| FtsY [Chlamydia trachomatis D-EC] gi|297749829|gb|ADI52507.1| FtsY [Chlamydia trachomatis D-LC] Length = 284 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 103/269 (38%), Positives = 151/269 (56%), Gaps = 7/269 (2%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLM 97 + L + E E LL D G + + EEL + + +V+ ++ +S++I K+ Sbjct: 15 KTLSSDLLEYAEVLLYEGDFGPKLTEAFCEELRRCKNPDERAVKELIRSFLSKIISKL-- 72 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P +P S RP LV+G NG GKTT + KL+ KV++ A DTFRSA +DQ Sbjct: 73 PQREPL----SVRPFSTLVLGTNGSGKTTTVAKLAHYYLSQNQKVLIVATDTFRSAGMDQ 128 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 ++ WA+ + F+ + G DAAA+A++ A A+ D +IIDT+GRLH ++ L+ + K Sbjct: 129 MRCWAETLNCGFISGKPGGDAAAIAFDGISAAVARDYDHVIIDTSGRLHTHTNLLKELQK 188 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + V + P APH L +DAT G N L QV++FH GLI TK++G+A+GG L Sbjct: 189 IATVCNKAFPGAPHETLMTIDATLGSNTLSQVQLFHEAVPINGLIFTKVEGSAKGGSLFR 248 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 I KIP F+G GE I+D EPF F Sbjct: 249 IADELKIPTRFVGYGETIHDFEPFAIDRF 277 >gi|26553936|ref|NP_757870.1| signal recognition particle GTPase FtsY [Mycoplasma penetrans HF-2] gi|26453944|dbj|BAC44274.1| signal recognition particle GTPase FtsY [Mycoplasma penetrans HF-2] Length = 354 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 110/312 (35%), Positives = 174/312 (55%), Gaps = 19/312 (6%) Query: 15 RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV----EE 69 +K +G +S L + IT+I+ +++D+ E +E+LLI D+GV KI EE Sbjct: 48 KKFDEGLKKSSSTLSKAITEIVKKFKKVDEEFYENIEELLISYDVGVLATNKITDAIREE 107 Query: 70 LLTKRYA-----KDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 + + K++ V ++ Y + + + + K R +++L++GVNGVG Sbjct: 108 ITFQNVEDPDLIKEIIVDKIFTYYIQDTDTNTFLDIKK-------DRTNILLIMGVNGVG 160 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALA 182 KTT I K++ KV+L AGDTFR+ A++QL IW+ R D V + G D A++ Sbjct: 161 KTTSIAKIANHFIKKDKKVLLVAGDTFRAGAVEQLNIWSQRLKCDIVLPDKEGQDPASVI 220 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 + K+ + + D++I DT+GRLHN LM + K+ V+ + D APH L VLDAT G Sbjct: 221 FTGVKKGKDENYDLVICDTSGRLHNKINLMKELEKIHSVIHKFDDTAPHENLLVLDATLG 280 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 Q+ + Q + F + TG+I+TKMDGT++GG ++ I IPV ++G+GE + DL F Sbjct: 281 QSGIMQAKAFKEITNITGIILTKMDGTSKGGIVLSIKDNFNIPVKYIGLGEKLEDLSAFD 340 Query: 303 AKDFSAVITGCL 314 + F IT L Sbjct: 341 LEKFVDGITKEL 352 >gi|295133103|ref|YP_003583779.1| signal recognition particle-docking protein FtsY [Zunongwangia profunda SM-A87] gi|294981118|gb|ADF51583.1| signal recognition particle-docking protein FtsY [Zunongwangia profunda SM-A87] Length = 316 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 115/256 (44%), Positives = 162/256 (63%), Gaps = 6/256 (2%) Query: 56 SDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HR 110 SD+GVA KI+ + R AKD + + + E I +L + DF+ + Sbjct: 56 SDVGVATTIKIINRI-EDRVAKDKYLGTDELNKILREEIAGLLSETNSGNATDFTVPNKK 114 Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P+V++VVGVNGVGKTT IGKL+ + GLKV+L A DTFR+AAIDQL++WA+RT + Sbjct: 115 PYVMMVVGVNGVGKTTTIGKLANQFKSRGLKVVLGAADTFRAAAIDQLQVWAERTDVPII 174 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 +GSD A++A++ + A DV++IDTAGRLHN LM + K+ RV++++ P AP Sbjct: 175 KQSMGSDPASVAFDTVQNAVKMDADVVLIDTAGRLHNKVNLMKELSKVKRVMQKVIPDAP 234 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 H VL VLD +TGQNA Q + F A T L +TK+DGTA+GG +I I +IPV ++G Sbjct: 235 HEVLLVLDGSTGQNAFEQAKQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIG 294 Query: 291 VGEGINDLEPFVAKDF 306 VGE + DL+ F +F Sbjct: 295 VGERVEDLQVFNKFEF 310 >gi|170781181|ref|YP_001709513.1| signal recognition particle receptor [Clavibacter michiganensis subsp. sepedonicus] gi|169155749|emb|CAQ00870.1| signal recognition particle receptor [Clavibacter michiganensis subsp. sepedonicus] Length = 291 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 116/297 (39%), Positives = 168/297 (56%), Gaps = 14/297 (4%) Query: 22 ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK----RYAK 77 A T L + + + +D+ ++LE LI +D G V + +++L K R Sbjct: 3 ARTPWSLSGALRGMFAKPTIDETTWDDLETALITADFGPDVTEATIDDLREKVERYRTTD 62 Query: 78 DVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136 +QR+L + + E + K L S RP VILVVGVNGVGKTT IGK +K + Sbjct: 63 PRDLQRMLRESIEERLAKHDPTLK------LSARPAVILVVGVNGVGKTTTIGKFAKFLR 116 Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQAKKVD 195 + G ++ A DTFR+AA+DQL WADR A+ V + G D A++A++ + A + Sbjct: 117 NYGRTAVVGAADTFRAAAVDQLATWADRAGAEIVRPQQPGQDPASVAFQTVEHAMRTGTE 176 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 ++IIDTAGRLH LM + K+ RV+++ P A VL VLDATTGQN L Q + F Sbjct: 177 MVIIDTAGRLHTKGGLMDELSKIRRVVEKQSPIA--EVLLVLDATTGQNGLAQAQAFIEH 234 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 G TGL++TK+DG+A+GG ++ + IP+ +G GEGI DL F F+ + G Sbjct: 235 GGVTGLVITKLDGSAKGGFILNVQERTGIPIKLIGQGEGIGDLTGFTPHVFAQNLVG 291 >gi|255507442|ref|ZP_05383081.1| Cell Division Protein [Chlamydia trachomatis D(s)2923] gi|289525866|emb|CBJ15348.1| Cell Division Protein [Chlamydia trachomatis Sweden2] gi|296435451|gb|ADH17629.1| Cell Division Protein [Chlamydia trachomatis E/150] gi|296439168|gb|ADH21321.1| Cell Division Protein [Chlamydia trachomatis E/11023] Length = 284 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 104/269 (38%), Positives = 150/269 (55%), Gaps = 7/269 (2%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLM 97 + L + E E LL D G + + EEL + + +V+ ++ +S++I K+ Sbjct: 15 KTLSSDLLEYAEVLLYEGDFGPKLTEAFCEELRRCKNPDERAVKELIRSFLSKIIAKL-- 72 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P +P S RP LV+G NG GKTT + KL+ KV+ A DTFRSA +DQ Sbjct: 73 PQREPL----SVRPFSTLVLGTNGSGKTTTVAKLAHYYLSQNQKVLTVATDTFRSAGMDQ 128 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 ++ WA+ + F+ + G DAAA+A++ A A+ D +IIDTAGRLH ++ L+ + K Sbjct: 129 MRCWAETLNCGFISGKPGGDAAAIAFDGISAAVARDYDHVIIDTAGRLHTHTNLLKELQK 188 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + V + P APH L +DAT G N L QV++FH GLI TK++G+A+GG L Sbjct: 189 IATVCNKAFPGAPHETLMTIDATLGSNTLSQVQLFHEAVPINGLIFTKVEGSAKGGSLFR 248 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 I KIP F+G GE I+D EPF F Sbjct: 249 IADELKIPTRFVGYGETIHDFEPFAIDRF 277 >gi|254519215|ref|ZP_05131271.1| signal recognition particle-docking protein FtsY [Clostridium sp. 7_2_43FAA] gi|226912964|gb|EEH98165.1| signal recognition particle-docking protein FtsY [Clostridium sp. 7_2_43FAA] Length = 307 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 114/256 (44%), Positives = 161/256 (62%), Gaps = 1/256 (0%) Query: 56 SDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114 SDIG+ +I++ L K R K V + +I +L+ ++ + S V+ Sbjct: 51 SDIGMDTTLEIIDRLKAKIRKEKINDPSEVYPALKAVIKDILLEGTEEREENLSSEKKVL 110 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 LV+GVNGVGKTT IGKL+ K + G KV+LAA DTFR+AAIDQL++W++R D V Sbjct: 111 LVIGVNGVGKTTSIGKLAAKNKEEGKKVLLAAADTFRAAAIDQLEVWSERAGVDIVKHME 170 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 GSD AA+ ++A A+++ +D+LI DTAGRLHN LM + K+ R++ R A L Sbjct: 171 GSDPAAVVFDAVSAAKSRNIDLLICDTAGRLHNKKNLMDELSKIGRIIDREFSDASKETL 230 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VLDATTGQNA+ Q + F G+I+TK+DGTA+GG +I I T IPV ++GVGEG Sbjct: 231 LVLDATTGQNAVIQAKQFMEACPIDGIILTKLDGTAKGGVVISIKNTLNIPVRYIGVGEG 290 Query: 295 INDLEPFVAKDFSAVI 310 I+DL+ F A+ F+ + Sbjct: 291 IDDLQEFDAEGFAEAL 306 >gi|293400484|ref|ZP_06644629.1| signal recognition particle-docking protein FtsY [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305510|gb|EFE46754.1| signal recognition particle-docking protein FtsY [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 322 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 124/305 (40%), Positives = 175/305 (57%), Gaps = 13/305 (4%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 S++K LS + K K F+ +L G + D+ EEL +L+ +DIG+ Sbjct: 11 FSSKKDGDRYLSGLNKSKKSFSERIRRLAVGFAGV------DEAFLEELMIVLLEADIGI 64 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSK---PFNWDFSHRPHVILV 116 AQKIV+E+ + A D +++ LI M M +K PF+ + + P VIL+ Sbjct: 65 KTAQKIVDEVENR--AMDRKLKKFNEITDCLIEVMRDMYCAKEDAPFHKN-TDGPTVILM 121 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNG GKTT KL+K+ + G V LAA DTFR+ AIDQL WA R + G Sbjct: 122 VGVNGSGKTTTTAKLTKRFQEEGSSVALAAADTFRAGAIDQLATWAQRLDVPCIKGREGG 181 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D +A +A + + ++D LI DTAGRL N + LM + KM RV++R P APH V V Sbjct: 182 DPSAALVDACRYVKEHQIDYLIGDTAGRLQNKANLMKELEKMRRVIEREIPGAPHEVWLV 241 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDATTGQN + Q ++F TG+I+TK+DGTA+GG +I I +PV ++G+GE ++ Sbjct: 242 LDATTGQNGISQAQIFLETTNVTGIILTKLDGTAKGGIVIAIREQLGLPVKYIGLGETVD 301 Query: 297 DLEPF 301 DL PF Sbjct: 302 DLRPF 306 >gi|313897518|ref|ZP_07831061.1| signal recognition particle-docking protein FtsY [Clostridium sp. HGF2] gi|312957888|gb|EFR39513.1| signal recognition particle-docking protein FtsY [Clostridium sp. HGF2] Length = 323 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 126/306 (41%), Positives = 173/306 (56%), Gaps = 15/306 (4%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREE-LEDL---LIRS 56 S++K LS + K K F+ KL G T GV EE LEDL L+ + Sbjct: 11 FSSKKDGDRYLSGLDKSKKSFSERIRKLALGFT----------GVNEEFLEDLMVVLLEA 60 Query: 57 DIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115 DIG+ AQKIV+E+ ++ + + S + + E++H++ + P VIL Sbjct: 61 DIGIKTAQKIVDEVESRAMDQKLKSFDEISECLIEVMHELYASVEDEDFHKNEDGPTVIL 120 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 +VGVNG GKTT KL+K G V+LAA DTFR+ AIDQL WADR + G Sbjct: 121 MVGVNGSGKTTTTAKLTKLFQSEGSSVVLAAADTFRAGAIDQLAKWADRLGVTCIKGREG 180 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 D +A +A + A+ +D LI DTAGRL N + LM + KM RV++R P APH V Sbjct: 181 GDPSAALVDACRYAKEHGMDYLIGDTAGRLQNKANLMQELSKMRRVIEREIPGAPHEVWL 240 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 VLDATTGQN + Q ++F +G+I+TKMDGTA+GG +I I +PV ++G+GE Sbjct: 241 VLDATTGQNGISQAQIFLETTKVSGIILTKMDGTAKGGIVIAIRDLLGLPVKYIGLGEKE 300 Query: 296 NDLEPF 301 +DL PF Sbjct: 301 DDLRPF 306 >gi|225165896|ref|ZP_03727665.1| signal recognition particle-docking protein FtsY [Opitutaceae bacterium TAV2] gi|224799858|gb|EEG18318.1| signal recognition particle-docking protein FtsY [Opitutaceae bacterium TAV2] Length = 253 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 99/202 (49%), Positives = 139/202 (68%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VI+++GVNG GKTT KL + G V+LAA DTFR+AA++QLK WA R V Sbjct: 50 PTVIVMIGVNGSGKTTTSAKLGWLLKQDGKTVLLAACDTFRAAAVEQLKSWATRLDLPIV 109 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 S G+DAAA+AY+A++ A+A+ D LI+DTAGRLH S LM + K+ RVL++ DP AP Sbjct: 110 ASHTGADAAAVAYDAWQAAKARGTDYLIVDTAGRLHTKSNLMEELAKIRRVLQKNDPAAP 169 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 H V+D + G N++ Q ++FH G TGL++TK+DGT+RGG ++ I K+P+YFLG Sbjct: 170 HHAWLVVDGSLGTNSIEQAKVFHKAFGLTGLVVTKLDGTSRGGAIVGIWRELKLPIYFLG 229 Query: 291 VGEGINDLEPFVAKDFSAVITG 312 +GE DL+PF A+++S + G Sbjct: 230 LGEQPEDLQPFNAENYSRAVFG 251 >gi|332705391|ref|ZP_08425469.1| signal recognition particle-docking protein FtsY [Lyngbya majuscula 3L] gi|332355751|gb|EGJ35213.1| signal recognition particle-docking protein FtsY [Lyngbya majuscula 3L] Length = 639 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 108/317 (34%), Positives = 189/317 (59%), Gaps = 6/317 (1%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 S + ++ E +SW+++L +G T L I I+ L+ E+E LL+++D+G+ Sbjct: 323 SPEDISIEEISWLKQLRQGLGKTRRSLINQIKAIVGQGPLNQDAVMEIESLLLQADVGIE 382 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVV 117 I++ L K + + ++ + + ++I +L P S ++ F+ ++ L+ Sbjct: 383 ATDYIIDTLQAKLREESLPAEKAIAYLKQIIRDLLEQPYSNNYSRIFAPENDTLNIWLMT 442 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176 GVNG GKTT IGKL+ +G + ++AA DTFR+AA++Q+KIW +R+ + + + + Sbjct: 443 GVNGAGKTTTIGKLANLGQKSGYRCLIAAADTFRAAAVEQVKIWGERSGTEVIANPGKNT 502 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D AA+ ++ AQ++ ++L++DTAGRL N LM + K+ R++ + P A L V Sbjct: 503 DPAAVVFDGISAAQSRNTELLLVDTAGRLQNKKNLMEELAKIRRIVAKKAPDAKVESLLV 562 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDAT GQN LRQ ++F A +G+++TK+DG+A+GG + +V +P+ F+G GEGI Sbjct: 563 LDATLGQNGLRQAQVFSEAAKLSGVVLTKLDGSAKGGVALAVVRELGLPIRFIGAGEGIE 622 Query: 297 DLEPFVAKDF-SAVITG 312 DL PF + +F A+++G Sbjct: 623 DLRPFSSYEFVEALLSG 639 >gi|328955640|ref|YP_004372973.1| signal recognition particle-docking protein FtsY [Coriobacterium glomerans PW2] gi|328455964|gb|AEB07158.1| signal recognition particle-docking protein FtsY [Coriobacterium glomerans PW2] Length = 306 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 109/281 (38%), Positives = 162/281 (57%), Gaps = 16/281 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLS-KPFN 104 E+LED L+ D+G +A K+ +EL K++ R L ++ + +P S P Sbjct: 34 EDLEDTLVMDDMGAEIAMKLTDELREIAARKNLKTSRQLRCALAARLEDYFVPSSCDPI- 92 Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 S P +L VG+NG GKTT +GK++ K AG + ++ + DTFR+AAI+QL IW +R Sbjct: 93 ---SQTPSCVLFVGINGAGKTTTVGKIASKAVAAGKRTVIGSADTFRAAAIEQLDIWGER 149 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK- 223 V G+D A++ Y+ +A D+++IDTAGRLH ++ LM + K++ V + Sbjct: 150 AGVPVVKRTRGADPASVCYDVLDEADRIAADLVLIDTAGRLHTSADLMRELAKVVNVTRK 209 Query: 224 -----RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 R P A H VL V+DATTGQN L Q F+ G G+IMTK+DGTA+GG + + Sbjct: 210 RAERMRAGPMAVHVVL-VIDATTGQNGLAQASRFNDSLGLDGVIMTKLDGTAKGGIALAV 268 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEE 319 ++P+ +GVGE ++DL+ F A DFS + G GEE Sbjct: 269 ASKLELPILAVGVGEQVDDLQTFDAGDFSRALVGT---GEE 306 >gi|302392421|ref|YP_003828241.1| signal recognition particle-docking protein FtsY [Acetohalobium arabaticum DSM 5501] gi|302204498|gb|ADL13176.1| signal recognition particle-docking protein FtsY [Acetohalobium arabaticum DSM 5501] Length = 369 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 102/252 (40%), Positives = 153/252 (60%), Gaps = 1/252 (0%) Query: 55 RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114 ++D+GV +V+EL T + + L++V + + ++ +D +HR ++ Sbjct: 112 QADVGVHTTMGLVDELRTIAEEEGIKDPSKLHNVFKEQLEDILDRGADDVYD-NHRLTIL 170 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 +VVGVNGVGKTT IGK++ + V+LAAGDTFR+ AI+QL+ W D + E Sbjct: 171 MVVGVNGVGKTTTIGKIALRAKQNSQDVLLAAGDTFRAGAIEQLEAWGTEVGVDIISHEA 230 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 G+D+AA+AY+A + A+A+ D+L++DTAGRLH LM + K+ R++ R A VL Sbjct: 231 GADSAAVAYDAVQAAKARDKDLLVVDTAGRLHTQDNLMEELKKVHRIIDREAEDARVEVL 290 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VLDATTGQNA+ Q EMF G+ +TK+DGTA+GG ++ + IPV +GVGE Sbjct: 291 LVLDATTGQNAISQAEMFDKAVDVDGIALTKLDGTAKGGIILAVKEELGIPVKLIGVGED 350 Query: 295 INDLEPFVAKDF 306 + DL+ F F Sbjct: 351 VEDLQDFEPDAF 362 >gi|330255506|gb|AEC10600.1| fused signal recognition particle receptor [Arabidopsis thaliana] Length = 373 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 111/278 (39%), Positives = 164/278 (58%), Gaps = 10/278 (3%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSK 101 D V +ELE+ L+ SD G + +IVE L + + + D + E + +ML + Sbjct: 94 DRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNS 153 Query: 102 PFNWDFSHR-PHVILVVGVNGVGKTTVI-------GKLSKKMSDAGLKVMLAAGDTFRSA 153 R P VI++VGVNG GKTT + GKL+ ++ + G KV++AAGDTFR+A Sbjct: 154 KTELQLGFRKPAVIMIVGVNGGGKTTSLDSGFCFSGKLAHRLKNEGTKVLMAAGDTFRAA 213 Query: 154 AIDQLKIWADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 A DQL+IWA+RT + V +E + AA + +A K+ + + DV++ DT+GRLH N LM Sbjct: 214 ASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLM 273 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + + + ++ AP+ +L VLD TG N L Q F+ V G TGLI+TK+DG+ARG Sbjct: 274 EELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARG 333 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 G ++ +V IPV F+GVGE + DL+PF + F I Sbjct: 334 GCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAI 371 >gi|219849764|ref|YP_002464197.1| signal recognition particle-docking protein FtsY [Chloroflexus aggregans DSM 9485] gi|219544023|gb|ACL25761.1| signal recognition particle-docking protein FtsY [Chloroflexus aggregans DSM 9485] Length = 330 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 110/270 (40%), Positives = 162/270 (60%), Gaps = 8/270 (2%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTK--RYAKDVSVQRVLYDVSELIHKMLMP 98 + D + +ELE+ LI++D+G+ Q +V + + RY V++ L +M+ Sbjct: 51 ITDQLWDELEEALIQADVGLETTQYLVNRTIDRVNRY----GVKKAREAREMLKAEMVRT 106 Query: 99 LSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAID 156 ++ +P+VILVVGVNG GKTT+I KL+ + + G KV+LAAGDTFR+AA + Sbjct: 107 FAEYAGQQRPDAKPYVILVVGVNGAGKTTLIAKLAHRYKNRFGKKVLLAAGDTFRAAATE 166 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL+ WA+R V G+DAAA+ Y+A A + VD+LI+DTAGRLH LM + Sbjct: 167 QLETWAERAGVPCVSLGQGADAAAVVYKAIDAALEQDVDILIVDTAGRLHAKYNLMQELE 226 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 K+ ++ R P APH + V+DATTGQN + Q + F AG T + +TKMDGTA+GG Sbjct: 227 KIRNIIARKLPGAPHETILVIDATTGQNGVLQAKAFLKAAGVTDVAVTKMDGTAKGGIAF 286 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 I + P+ ++G GE ++DL F A+ F Sbjct: 287 AIAQDIERPIRYIGTGEKLDDLALFDAQTF 316 >gi|172038841|ref|YP_001805342.1| cell division protein [Cyanothece sp. ATCC 51142] gi|171700295|gb|ACB53276.1| cell division protein [Cyanothece sp. ATCC 51142] Length = 464 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 108/306 (35%), Positives = 181/306 (59%), Gaps = 5/306 (1%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 ++ E ++W+++L +G + L + I+ L++ E+E LL+++D G+ Sbjct: 152 ISEEEINWLKRLRQGLGKSRRGLVNQLKSIVGQGPLNEDAVMEIEALLLQADTGIEATDY 211 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVI---LVVGVNG 121 I+ L K + + ++ L + ++ +L PL K N F+ V+ L+ GVNG Sbjct: 212 IISTLQNKLLEEALPPEQALDYLKSILRDILDRPLQKVVNPGFAPEKGVLNIWLLTGVNG 271 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180 GKTT IGKL+ +G ++AA DTFR+AA++Q+K+W +RT+ + + +D AA Sbjct: 272 AGKTTTIGKLAHLAQKSGYNCIIAAADTFRAAAVEQVKVWGERTNTPVIANPGKNTDPAA 331 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++ AQA++ D+L++DTAGRL N LMA + K+ R++ + A L VLDAT Sbjct: 332 VVFDGISAAQARQADLLLVDTAGRLQNKKNLMAELAKIRRIIDKKADKAQVESLLVLDAT 391 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQN LRQ ++F A +G+++TK+DGTA+GG + + ++P+ F+GVGEGI DL P Sbjct: 392 LGQNGLRQAQVFSEAANLSGVVLTKLDGTAKGGVALAVAQQLELPIRFIGVGEGIEDLRP 451 Query: 301 FVAKDF 306 F + +F Sbjct: 452 FSSYEF 457 >gi|332655287|ref|ZP_08421027.1| signal recognition particle-docking protein FtsY [Ruminococcaceae bacterium D16] gi|332515792|gb|EGJ45402.1| signal recognition particle-docking protein FtsY [Ruminococcaceae bacterium D16] Length = 305 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 114/274 (41%), Positives = 172/274 (62%), Gaps = 7/274 (2%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML--- 96 L D +ELE+ LI +D G+ ++VEEL + + + + + + E + +++ Sbjct: 35 ELTDDFYDELEESLILADTGMDTTLELVEELRGRVREEHI---KTVEEARECMCRVITDA 91 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 M + +P + S +P V+L +GVNGVGKTT IGK+ ++ + KV+L A DTFR+AA + Sbjct: 92 MTVGEP-TLNLSTKPAVVLFIGVNGVGKTTTIGKIGHQLKNERKKVLLCAADTFRAAAAE 150 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL IWA+R+ + + G+D AA+ ++A A+A++ DV++IDTAGRLHN LM + Sbjct: 151 QLTIWAERSGVEIIKQHEGADPAAVVFDAASAAKARRADVVLIDTAGRLHNKQNLMNELN 210 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 K+ RV+ R P L VLDATTGQN L Q + F AG TG+++TK+DGTA+GG I Sbjct: 211 KISRVIDRELPDCARETLLVLDATTGQNGLIQAKQFKEAAGITGIVLTKLDGTAKGGIAI 270 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 I +PV + GVGEGI+DL+PF A +F+ + Sbjct: 271 AIAKELGVPVKYAGVGEGIDDLKPFDAAEFAQAL 304 >gi|189219672|ref|YP_001940313.1| Signal recognition particle GTPase FtsY [Methylacidiphilum infernorum V4] gi|189186530|gb|ACD83715.1| Signal recognition particle GTPase FtsY [Methylacidiphilum infernorum V4] Length = 281 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 109/270 (40%), Positives = 161/270 (59%), Gaps = 17/270 (6%) Query: 44 GVREEL--EDLLIRSDIGVAVAQKIV-----EELLTKRYAKDVSVQRVLYDVSELIHKML 96 G +E+L E LL+ SD+G+ ++QK+ E+LL K + +++ L ++ + K+ Sbjct: 16 GPKEQLDWEALLVESDLGINLSQKLYALLDKEKLLGKTELAEKRIKKELLNILQ-DRKLP 74 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 +P+ KP VIL+VGVNG GKTT KL+ + G KV LAA DTFR+AAI+ Sbjct: 75 LPVGKP---------GVILLVGVNGGGKTTSAAKLAYRFKGEGKKVFLAACDTFRAAAIE 125 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QLKIWAD+ V + G+DAA++A+ +F QA + D LI+DTAGR N LM +G Sbjct: 126 QLKIWADKLEVPVVLGKEGADAASVAFRSFGQALDAQADYLIVDTAGRQANKKNLMMELG 185 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 K+ R L+++ P +L V+D T+G N L Q F+ G G+I+TK+D +A+GG + Sbjct: 186 KIKRTLEKVSGQIPLFILLVVDGTSGSNVLVQAREFNEALGLAGMIVTKLDSSAKGGMVA 245 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + IP YFLG GE ++ LE F + F Sbjct: 246 AVKYEVGIPTYFLGRGETLDSLEEFNPEKF 275 >gi|282882963|ref|ZP_06291567.1| signal recognition particle-docking protein FtsY [Peptoniphilus lacrimalis 315-B] gi|281297170|gb|EFA89662.1| signal recognition particle-docking protein FtsY [Peptoniphilus lacrimalis 315-B] Length = 297 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 111/262 (42%), Positives = 162/262 (61%), Gaps = 3/262 (1%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-R 110 +LI +D+G+ K+++ L + ++ + D+ + K LM ++ N S Sbjct: 38 ILISADVGMDTTMKLIDNLRETIIKEKINDPSKVKDILKSETKKLM--NEELNKGISDIS 95 Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P +ILVVGVNGVGKTT IGKL+K+ D G V++AA DTFR+AAIDQLK W +R + D + Sbjct: 96 PSIILVVGVNGVGKTTTIGKLAKRYKDEGKSVLIAAADTFRAAAIDQLKEWGNRVNVDVI 155 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 G D AA+ ++A A+++ D+LI+DTAGRLHN + LM + K+ R++ + P A Sbjct: 156 SHSEGQDPAAVVFDAITAAKSRNADILIVDTAGRLHNKANLMKELEKINRIIDKKYPEAY 215 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 L VLDATTGQNA+ Q + F TG+ +TK+DGTA+GG +I + +IP+ +G Sbjct: 216 RETLLVLDATTGQNAMNQAKTFKEAVNITGIALTKLDGTAKGGVVIALQSELQIPIKLVG 275 Query: 291 VGEGINDLEPFVAKDFSAVITG 312 VGEGI DL+ F +F I G Sbjct: 276 VGEGIYDLQDFNLDNFLQGIFG 297 >gi|296270735|ref|YP_003653367.1| signal recognition particle-docking protein FtsY [Thermobispora bispora DSM 43833] gi|296093522|gb|ADG89474.1| signal recognition particle-docking protein FtsY [Thermobispora bispora DSM 43833] Length = 391 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 124/311 (39%), Positives = 186/311 (59%), Gaps = 5/311 (1%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V S + +L A + + G+ +++S RLDD V +E+E+ LI +D+GVA + Sbjct: 82 EVPPPSAGRMVRLRSRLARSQNVIGRGLLELLSRDRLDDEVWDEIEETLITADVGVAPTR 141 Query: 65 KIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFS-HRPHVILVVGVNG 121 +VE L TK + + + + + E + + P L + + + RP V+L+VGVNG Sbjct: 142 AMVENLRTKVKVLGTRTEEELRALLREELLAQVGPDLDRTLRTEPTGERPAVVLIVGVNG 201 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT GKL++ + G KV+L A DTFR+AA DQL+ W +R A V G+D A++ Sbjct: 202 TGKTTTAGKLARALVGDGKKVLLGAADTFRAAAADQLQTWGERVGAAVVRGPEGADPASV 261 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 A++A + A KVD +I+DTAGRLH LM +GK+ RV+++ VL VLDATT Sbjct: 262 AFDAVAKGIADKVDTVIVDTAGRLHTKVGLMDELGKIKRVIEKK--AQVDEVLLVLDATT 319 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQN +RQ ++F V TG+++TK+DGTA+GG +I + +PV +G+GEG +DL PF Sbjct: 320 GQNGMRQAQVFAEVVDVTGIVLTKLDGTAKGGIVISVQRELGVPVKLVGLGEGPDDLAPF 379 Query: 302 VAKDFSAVITG 312 K F I G Sbjct: 380 DPKLFVDAIVG 390 >gi|312874442|ref|ZP_07734472.1| signal recognition particle-docking protein FtsY [Lactobacillus iners LEAF 2052A-d] gi|325911862|ref|ZP_08174266.1| signal recognition particle-docking protein FtsY [Lactobacillus iners UPII 143-D] gi|311090054|gb|EFQ48468.1| signal recognition particle-docking protein FtsY [Lactobacillus iners LEAF 2052A-d] gi|325476368|gb|EGC79530.1| signal recognition particle-docking protein FtsY [Lactobacillus iners UPII 143-D] Length = 337 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 101/261 (38%), Positives = 149/261 (57%), Gaps = 10/261 (3%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---- 109 I +D+G A+ + +EL + K+V ++L +V I + L+ L + N S Sbjct: 72 IEADVGYETAEMLTDELRNEAKLKNVKDSKLLKNV---IVEKLVELYEQNNTKDSKLILK 128 Query: 110 ---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P V L VGVNG GKTT IGKL+KK+ DAG VML A DTFR+ A++QLK W R Sbjct: 129 TGDMPAVFLFVGVNGAGKTTTIGKLAKKLKDAGNSVMLVAADTFRAGAVEQLKAWGQRVD 188 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + +D +++ YE + A +D L++DTAGRL N LM + K+ R + R Sbjct: 189 VQVISGNTNADPSSVVYEGLECAVNNHIDYLLVDTAGRLQNKVNLMNELDKINRTIHRKI 248 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P P +L V+D +TGQNAL Q + F + TGL++TK+DG+++GG ++ I +PV Sbjct: 249 PDQPQEILLVIDGSTGQNALNQAKEFDKITKLTGLVLTKLDGSSKGGIVLAIRNEMSLPV 308 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GE DL F A+ F+ Sbjct: 309 KLVGLGEKAEDLAEFDAEKFA 329 >gi|313682715|ref|YP_004060453.1| signal recognition particle-docking protein ftsy [Sulfuricurvum kujiense DSM 16994] gi|313155575|gb|ADR34253.1| signal recognition particle-docking protein FtsY [Sulfuricurvum kujiense DSM 16994] Length = 295 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 106/278 (38%), Positives = 165/278 (59%), Gaps = 18/278 (6%) Query: 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 ++ELE++L+ +D V +VE +L + Y D++ +L K+L L+ N Sbjct: 29 KDELENILLEAD----VEYDLVEIILRELYQNDITR-------DQLRSKLLATLAYAQNS 77 Query: 106 --DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D ++P V L++GVNG GKTT I KL++ + G +V+L AGDTFR+AAI+QL WAD Sbjct: 78 LPDNPNKPTVTLIIGVNGAGKTTTIAKLAQHHLNKGERVILGAGDTFRAAAIEQLTRWAD 137 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + V S G D +A+AY+ + A+A+ + +IIDTAGRLH + L + K++R+ Sbjct: 138 KLDVPIVSSRQGHDPSAVAYDTIESAKARGFEQVIIDTAGRLHTQTNLGNELKKIVRICD 197 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 + APH + +LD T G +A+ Q + F+ + G G+I+TK+DGTA+GG + I Sbjct: 198 KAHTGAPHRKILILDGTQGSSAIAQAKAFNEMIGVDGIIITKLDGTAKGGSVFSIAYALS 257 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD--YGEE 319 +P+ ++GVGE L PF +F + G LD +GEE Sbjct: 258 LPILYIGVGEQPEHLIPFDKYEF---VDGILDAIFGEE 292 >gi|325265086|ref|ZP_08131813.1| signal recognition particle-docking protein FtsY [Clostridium sp. D5] gi|324029776|gb|EGB91064.1| signal recognition particle-docking protein FtsY [Clostridium sp. D5] Length = 312 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 127/305 (41%), Positives = 182/305 (59%), Gaps = 12/305 (3%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66 E + ++L G T + G+ I ++DD EELE+ LI D+GV +I Sbjct: 2 EEKQGFFKRLVSGLTKTRDNIVSGMDSIFHGFSKIDDDFYEELEETLIMGDLGVHTTMEI 61 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPHVILVVGVNG 121 +E+L K A+ + + + EL ++ + + N ++F R V+ V+GVNG Sbjct: 62 IEDLKAKVKAQHI---KEPIECREL---LIESIKEQMNVGETAYEFEDRTSVVFVIGVNG 115 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT IGKL+ K + KV+LAA DTFR+AA +QLK WA+R + + + GSD A++ Sbjct: 116 VGKTTTIGKLAGKFHEQHKKVILAAADTFRAAAGEQLKEWANRAEVEMIGGQEGSDPASV 175 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A A+A+K D+L+ DTAGRLHN LM + K+ RV+ R P A L VLDATT Sbjct: 176 VFDAVAAARARKADILLCDTAGRLHNKKNLMEELKKINRVIDREYPEAHKETLVVLDATT 235 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL Q + F+ V+ TG+I+TKMDGTA+GG + I IPV ++GVGE I DL+ F Sbjct: 236 GQNALSQAKEFNEVSDITGVILTKMDGTAKGGIAVAIQAELGIPVKYIGVGETIEDLQKF 295 Query: 302 VAKDF 306 A +F Sbjct: 296 DADEF 300 >gi|126657247|ref|ZP_01728413.1| cell division protein; FtsY [Cyanothece sp. CCY0110] gi|126621518|gb|EAZ92229.1| cell division protein; FtsY [Cyanothece sp. CCY0110] Length = 463 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 108/306 (35%), Positives = 180/306 (58%), Gaps = 5/306 (1%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 V+ E ++W+++L +G + L + I+ L++ E+E LL+++D G+ Sbjct: 151 VSQEEINWLKRLRQGLGKSRRGLVNQLKSIVGQGPLNEDAVMEIEALLLQADTGIEATDY 210 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVI---LVVGVNG 121 I+ L K + + ++ L + ++ ++L PL K N F+ V+ L+ GVNG Sbjct: 211 IISTLQNKLLEEALPPEQALEYLKSILREILDRPLQKVVNPGFAPEKGVLNIWLLTGVNG 270 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180 GKTT IGKL+ +G ++AA DTFR+AA+ Q+++W +RT+ + + +D AA Sbjct: 271 AGKTTTIGKLAHLAQQSGYNCIIAAADTFRAAAVQQVQVWGERTNTPVIANPGKNTDPAA 330 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++ AQA++ D+L++DTAGRL N LMA + K+ R++ + A L VLDAT Sbjct: 331 VVFDGISAAQAREADLLLVDTAGRLQNKKNLMAELAKIRRIIDKKADKAQVESLLVLDAT 390 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQN LRQ ++F A +G+++TK+DGTA+GG + + +P+ F+GVGEGI DL P Sbjct: 391 LGQNGLRQAQVFSEAANLSGVVLTKLDGTAKGGVALAVAQQLDLPIRFIGVGEGIEDLRP 450 Query: 301 FVAKDF 306 F + +F Sbjct: 451 FSSYEF 456 >gi|223986253|ref|ZP_03636268.1| hypothetical protein HOLDEFILI_03578 [Holdemania filiformis DSM 12042] gi|223961779|gb|EEF66276.1| hypothetical protein HOLDEFILI_03578 [Holdemania filiformis DSM 12042] Length = 323 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 108/259 (41%), Positives = 152/259 (58%), Gaps = 7/259 (2%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYDVSELIHKMLMPLSKP 102 EEL +L+ SD+G+ A+KI ++L T RY V L ++ + I+ L P Sbjct: 51 EELMIVLLESDVGIQTAEKICDQLKTTVDQYRYVTFKDVMAFLMEIMQNIY--LESTDAP 108 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 + + P VIL+VGVNG GKTT KL+K G KV + A DTFR+ AI+QL WA Sbjct: 109 IVMN-ENGPTVILMVGVNGSGKTTTCAKLTKLYQSQGKKVGVVAADTFRAGAIEQLARWA 167 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 D+ + D +++ + + A+ +D+L+ DTAGRL N LM + KM +V+ Sbjct: 168 DKLGVPCIKGRENGDPSSVLVDGCRYAKEHNLDILLCDTAGRLQNKVNLMNELAKMRKVI 227 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 R APH V VLD+TTGQN L Q ++F V TG+I+TKMDGTA+GG ++ I Sbjct: 228 GREIEGAPHHVWLVLDSTTGQNGLSQAKIFQEVTDVTGIILTKMDGTAKGGIVLAIKDVL 287 Query: 283 KIPVYFLGVGEGINDLEPF 301 IPVY+LG+GE +DL+PF Sbjct: 288 HIPVYYLGLGEREDDLKPF 306 >gi|299138352|ref|ZP_07031531.1| signal recognition particle-docking protein FtsY [Acidobacterium sp. MP5ACTX8] gi|298599598|gb|EFI55757.1| signal recognition particle-docking protein FtsY [Acidobacterium sp. MP5ACTX8] Length = 334 Score = 185 bits (470), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 117/321 (36%), Positives = 188/321 (58%), Gaps = 18/321 (5%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVA 61 +Q +S+ + ++ + + T L E I +++ +R +D+ ++LE +L+ SDIG Sbjct: 24 SQPESSKPRGFFDRMKQAVSRTREALSESIGSVVALTREIDENNLDDLELVLLASDIGSV 83 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVI 114 +I+ L ++ ++++ + D +EL + ++L ++ P S P VI Sbjct: 84 TTGEIITHL------RERALRQGINDGAELKSLLKAELRRILDSVAHPIAHP-STPPEVI 136 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 ++VGVNG GKTT GKL+ G V+L A DTFR+AAI+QL++WA R+ + + Sbjct: 137 MMVGVNGTGKTTTTGKLAALYRSQGRSVLLCAADTFRAAAIEQLEVWAGRSGVQLIKTRQ 196 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 G D +A ++A A+A+ ++LI+DTAGRLH S LM + KM R ++L P APH L Sbjct: 197 GGDPSAALFDACTAAKARATEILIVDTAGRLHTKSDLMKELDKMRRTAEKLIPGAPHQTL 256 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DATTGQN L+Q +F A TG+++TK+DGTA+GG ++ I +PV + GVGE Sbjct: 257 LVMDATTGQNGLQQARLFTEAARVTGIVLTKLDGTAKGGIVVAIARELGLPVLYAGVGEK 316 Query: 295 INDLEPFVAKDFSAVITGCLD 315 + D+ PF D +A + LD Sbjct: 317 MEDILPF---DPAAFVDSLLD 334 >gi|72161062|ref|YP_288719.1| signal recognition particle-docking protein FtsY [Thermobifida fusca YX] gi|71914794|gb|AAZ54696.1| signal recognition particle-docking protein FtsY [Thermobifida fusca YX] Length = 393 Score = 185 bits (470), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 120/282 (42%), Positives = 170/282 (60%), Gaps = 11/282 (3%) Query: 31 GITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90 G+ ++++S +LD+ EE+ED LI +D+GV A +I E L T+ V R + +V Sbjct: 109 GLLNLLASDKLDEDTWEEIEDTLITADVGVTSATQITEGLRTRVR---VLGTRSVDEVRA 165 Query: 91 LIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 L+ + L+ P RP VI+VVGVNGVGKTT GKL++ + G V+L Sbjct: 166 LLREELLAHINPKLDRTVRTKGPGERPAVIMVVGVNGVGKTTTAGKLARVVIGDGGSVVL 225 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 A DTFR+AA DQL+ W +R A V G+D A++A++A Q + D +IIDTAGR Sbjct: 226 GAADTFRAAAADQLQTWGERVGATVVRKHEGADPASVAFDAVSQGIEQGADTVIIDTAGR 285 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 LH + LM +GK+ RV+++ VL VLDATTGQN LRQ +F V TG+++T Sbjct: 286 LHTKTGLMDELGKVKRVVEK--KAQVDEVLLVLDATTGQNGLRQARVFAEVVNVTGIVLT 343 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 KMDGTA+GG +I + +PV +G+GEG +DL PF + F Sbjct: 344 KMDGTAKGGIIIQVQRELGVPVKLVGLGEGPDDLAPFDPETF 385 >gi|255349224|ref|ZP_05381231.1| Cell Division Protein [Chlamydia trachomatis 70] gi|255503761|ref|ZP_05382151.1| Cell Division Protein [Chlamydia trachomatis 70s] Length = 284 Score = 185 bits (470), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 108/274 (39%), Positives = 148/274 (54%), Gaps = 17/274 (6%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-- 96 + L + E E LL D G + + EEL R K+ +RV V ELI L Sbjct: 15 KTLSSDLLEYAEVLLYEGDFGPKLTEAFCEEL---RRCKNPD-ERV---VKELIRSFLSK 67 Query: 97 ----MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 +P +P S RP LV+G NG GKTT + KL+ KV+ A DTFRS Sbjct: 68 IIAKLPQREPL----SVRPFSTLVLGTNGSGKTTTVAKLAHYYLSQNQKVLTVATDTFRS 123 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 A +DQ++ WA+ + F+ + G DAAA+A++ A A+ D +IIDT+GRLH ++ L+ Sbjct: 124 AGMDQMRCWAETLNCGFISGKPGGDAAAIAFDGISAAVARDYDHVIIDTSGRLHTHTNLL 183 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + K+ V + P APH L +DAT G N L QV++FH GLI TK++G+A+G Sbjct: 184 KELQKIATVCNKAFPGAPHETLMTIDATLGSNTLSQVQLFHEAVPINGLIFTKVEGSAKG 243 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G L I KIP F+G GE I+D EPF F Sbjct: 244 GSLFRIADELKIPTRFVGYGETIHDFEPFAIDRF 277 >gi|119486598|ref|ZP_01620648.1| cell division protein [Lyngbya sp. PCC 8106] gi|119456215|gb|EAW37347.1| cell division protein [Lyngbya sp. PCC 8106] Length = 559 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 110/318 (34%), Positives = 193/318 (60%), Gaps = 12/318 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + VA E ++W++KL +G T L + I+ L++ EE+E LL+++D+GV Sbjct: 245 EDVALEEITWLQKLWRGLGRTRRNLLNQLKAIVGQGPLNEEAVEEIESLLLQADVGVEAT 304 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH--RP-----HVILV 116 ++ L K + + ++ + + +++ ++L +P+ +S P ++ L+ Sbjct: 305 DTVIAALQEKIRTEILPPEQAIAYLKQILRELL---DRPYQNGYSPLFAPQKDTLNIWLM 361 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IG 175 GVNG GKTT IGK+ + + + ++AA DTFR+AA++Q++IW +R+ D + + Sbjct: 362 TGVNGAGKTTTIGKIGHIATKSDYRCLIAAADTFRAAAVEQVRIWGERSGVDVIANPGKN 421 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 +D AA+ ++A + A+++ +++L++DTAGRL N LM + K+ RV+++ P A L Sbjct: 422 TDPAAVVFDAMEAARSRNIELLLVDTAGRLQNKKNLMEELSKVRRVIEKKAPDAIVESLL 481 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 VLDAT GQN LRQ E+F A +G+++TK+DGTA+GG + IV +P+ F+GVGE I Sbjct: 482 VLDATLGQNGLRQAEVFAEAAQLSGVVLTKLDGTAKGGVALAIVQKLGLPIRFIGVGESI 541 Query: 296 NDLEPFVAKDF-SAVITG 312 DL PF + +F A+++G Sbjct: 542 EDLRPFSSYEFIEALLSG 559 >gi|227892633|ref|ZP_04010438.1| signal recognition particle docking protein FtsY [Lactobacillus ultunensis DSM 16047] gi|227865565|gb|EEJ72986.1| signal recognition particle docking protein FtsY [Lactobacillus ultunensis DSM 16047] Length = 430 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 100/259 (38%), Positives = 151/259 (58%), Gaps = 5/259 (1%) Query: 54 IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 I SD+G A+++ +EL L ++D Q ++ + +L K + + Sbjct: 164 IESDVGYETAEQLTDELREEAKLKNAKSRDALKQVIVEKLVDLYDKGGQDKDEKLIYHPD 223 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +P+V L VGVNG GKTT IGKL+K+ D G V+LAA DTFR+ A++QL W R Sbjct: 224 DKPNVYLFVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLVEWGKRVDVP 283 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V + +D A++ Y+A ++A +K D L++DTAGRL N LMA + K+ R +K+L P Sbjct: 284 VVTGKEKADPASVVYDATERAINEKADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLAPD 343 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P L VLD +TGQNAL Q + F TGL++TK+DG+++GG ++ I +PV Sbjct: 344 QPTETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMNLPVKL 403 Query: 289 LGVGEGINDLEPFVAKDFS 307 +G+GE DL F A +++ Sbjct: 404 VGLGEKAEDLADFDAANYA 422 >gi|293381178|ref|ZP_06627186.1| signal recognition particle-docking protein FtsY [Lactobacillus crispatus 214-1] gi|290922218|gb|EFD99212.1| signal recognition particle-docking protein FtsY [Lactobacillus crispatus 214-1] Length = 432 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 99/259 (38%), Positives = 153/259 (59%), Gaps = 5/259 (1%) Query: 54 IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 I SD+G A+++ +EL L ++D + ++ + +L K + ++ Sbjct: 166 IESDVGYETAEQLTDELREEAKLQNAKSRDELKRVIVEKLVDLYDKGGNSEDEQLTYNAE 225 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +P+V L+VGVNG GKTT IGKL+K+ D G V+LAA DTFR+ A++QL W R Sbjct: 226 AKPNVYLLVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLVEWGKRVDVP 285 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V + +D A++ Y+A ++A +K D L++DTAGRL N LMA + K+ R +K+L P Sbjct: 286 VVTGKEKADPASVVYDATERAIREKADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLPD 345 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P L VLD +TGQNAL Q + F TGL++TK+DG+++GG ++ I +PV Sbjct: 346 QPTETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMNLPVKL 405 Query: 289 LGVGEGINDLEPFVAKDFS 307 +G+GE DL F A +++ Sbjct: 406 VGLGERAEDLADFDAANYA 424 >gi|295396042|ref|ZP_06806226.1| cell division protein FtsY [Brevibacterium mcbrellneri ATCC 49030] gi|294971130|gb|EFG47021.1| cell division protein FtsY [Brevibacterium mcbrellneri ATCC 49030] Length = 377 Score = 185 bits (469), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 121/312 (38%), Positives = 184/312 (58%), Gaps = 13/312 (4%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++V +E + + KL A ++ + G+ ++S LD+ EE+ED LI +D+GV A Sbjct: 63 REVPTEPTTRLAKLRNRLAKSNNAMGRGLLALLSRDTLDEATWEEIEDTLIVADLGVDTA 122 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-------PHVILV 116 ++V+ L R V R L V L+ + L+ + P D + R P V+LV Sbjct: 123 TELVDNL---RERVRVLGTRDLSTVRALLREELIKVVDP-TMDRTLRTETGGDEPSVVLV 178 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNG GKTT +GK+++ + + V+L A DTFR+AA +QL W +R + V GS Sbjct: 179 VGVNGAGKTTTVGKIARVLVASDRTVLLGAADTFRAAAAEQLTTWGERVGVETVRGPEGS 238 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL--DPHAPHSVL 234 D A++AY A ++ VDV++IDTAGRL N LM +GK+ +V R + H VL Sbjct: 239 DPASVAYSAVERGLKDNVDVVLIDTAGRLQNKKGLMDELGKVKKVATRPLGEGHELDEVL 298 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VLDATTGQN ++Q ++F V +G+++TK+DGTA+GG ++ + +PV +G+GEG Sbjct: 299 LVLDATTGQNGMQQAKVFAEVVNVSGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEG 358 Query: 295 INDLEPFVAKDF 306 +DL PFV +DF Sbjct: 359 ADDLAPFVVEDF 370 >gi|315653378|ref|ZP_07906300.1| cell division protein FtsY [Lactobacillus iners ATCC 55195] gi|315489303|gb|EFU78943.1| cell division protein FtsY [Lactobacillus iners ATCC 55195] Length = 345 Score = 185 bits (469), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 101/261 (38%), Positives = 148/261 (56%), Gaps = 10/261 (3%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---- 109 I +D+G A+ + +EL + K+V ++L +V I + L+ L + N S Sbjct: 80 IEADVGYETAEMLTDELRNEAKLKNVKDSKLLKNV---IVEKLVELYEQNNTKDSKLILK 136 Query: 110 ---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P V L VGVNG GKTT IGKL+KK+ DAG VML A DTFR+ A++QLK W R Sbjct: 137 TGDMPAVFLFVGVNGAGKTTTIGKLAKKLKDAGNSVMLVAADTFRAGAVEQLKAWGQRVD 196 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + +D +++ YE + A +D L++DTAGRL N LM + K+ R + R Sbjct: 197 VQVISGNTNADPSSVVYEGLECAVKNHIDYLLVDTAGRLQNKVNLMNELDKINRTIHRKI 256 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P P +L V+D +TGQNAL Q + F TGL++TK+DG+++GG ++ I +PV Sbjct: 257 PDQPQEILLVIDGSTGQNALNQAKEFDKTTKLTGLVLTKLDGSSKGGIVLAIRNEMSLPV 316 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GE DL F A+ F+ Sbjct: 317 KLVGLGEKAEDLAEFDAEKFA 337 >gi|241764418|ref|ZP_04762443.1| signal recognition particle-docking protein FtsY [Acidovorax delafieldii 2AN] gi|241366208|gb|EER60779.1| signal recognition particle-docking protein FtsY [Acidovorax delafieldii 2AN] Length = 327 Score = 185 bits (469), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 126/303 (41%), Positives = 182/303 (60%), Gaps = 7/303 (2%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 E W+ +L G T I + + ++DD + EELE+ L+ +D GV Q ++E Sbjct: 29 ERKGWLDRLKAGLRKTG----SSIATVFTGTQIDDTLYEELEEALLMADTGVKATQHLLE 84 Query: 69 ELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 +L + + +K V +++ + ++L PL K H P VI+V GVNG GKTT Sbjct: 85 DLKRRVKESKTTDPAAVKGLLADALAELLRPLEKALVIG-EHTPTVIMVAGVNGAGKTTS 143 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+K ++ G V+LAA DTFR+AA +QL +WADR + + V E G D AA++++A Sbjct: 144 IGKLTKHLATEGASVLLAAADTFRAAAREQLGVWADRNTVEIVSQE-GGDPAAVSFDAVT 202 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 +A+ DV+++DTAGRL LM + K+ RV+ + D APH VL V+D TGQNAL Sbjct: 203 AGKARGKDVVLVDTAGRLPTQLHLMEELKKIRRVVTKADATAPHEVLLVIDGNTGQNALA 262 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 QV F TGL++TK+DGTA+GG L I IPVYF+GVGE + DLE F A++F+ Sbjct: 263 QVRAFDDALQLTGLVVTKLDGTAKGGVLAAIAQERPIPVYFIGVGEKLEDLETFNAREFA 322 Query: 308 AVI 310 + Sbjct: 323 QAL 325 >gi|312872428|ref|ZP_07732497.1| signal recognition particle-docking protein FtsY [Lactobacillus iners LEAF 2062A-h1] gi|325913459|ref|ZP_08175825.1| signal recognition particle-docking protein FtsY [Lactobacillus iners UPII 60-B] gi|311092010|gb|EFQ50385.1| signal recognition particle-docking protein FtsY [Lactobacillus iners LEAF 2062A-h1] gi|325477228|gb|EGC80374.1| signal recognition particle-docking protein FtsY [Lactobacillus iners UPII 60-B] Length = 337 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 101/261 (38%), Positives = 148/261 (56%), Gaps = 10/261 (3%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---- 109 I +D+G A+ + +EL + K+V ++L +V I + L+ L + N S Sbjct: 72 IEADVGYETAEMLTDELRNEAKLKNVKDSKLLKNV---IVEKLVELYEQNNTKDSKLILK 128 Query: 110 ---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P V L VGVNG GKTT IGKL+KK+ DAG VML A DTFR+ A++QLK W R Sbjct: 129 TGDMPAVFLFVGVNGAGKTTTIGKLAKKLKDAGNSVMLVAADTFRAGAVEQLKAWGQRVD 188 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + +D +++ YE + A +D L++DTAGRL N LM + K+ R + R Sbjct: 189 VQVISGNTNADPSSVVYEGLECAVKNHIDYLLVDTAGRLQNKVNLMNELDKINRTIHRKI 248 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P P +L V+D +TGQNAL Q + F TGL++TK+DG+++GG ++ I +PV Sbjct: 249 PDQPQEILLVIDGSTGQNALNQAKEFDKTTKLTGLVLTKLDGSSKGGIVLAIRNEMSLPV 308 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GE DL F A+ F+ Sbjct: 309 KLVGLGEKAEDLAEFDAEKFA 329 >gi|256849803|ref|ZP_05555234.1| cell division protein [Lactobacillus crispatus MV-1A-US] gi|256713292|gb|EEU28282.1| cell division protein [Lactobacillus crispatus MV-1A-US] Length = 415 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 101/260 (38%), Positives = 156/260 (60%), Gaps = 7/260 (2%) Query: 54 IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF 107 I SD+G A+++ +EL L ++D ++RV+ + + +L K + ++ Sbjct: 149 IESDVGYETAEQLTDELREEAKLQNAKSRD-DLKRVIVEKLVDLYDKGGNSEDEQLTYNA 207 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 +P+V L VGVNG GKTT IGKL+K+ D G V+LAA DTFR+ A++QL W +R Sbjct: 208 EAKPNVYLFVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLVEWGNRVDV 267 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V + +D A++ Y+A ++A +K D L++DTAGRL N LMA + K+ R +K+L P Sbjct: 268 PVVTGKEKADPASVVYDATERAIREKADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLP 327 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P L VLD +TGQNAL Q + F TGL++TK+DG+++GG ++ I +PV Sbjct: 328 DQPTETLLVLDGSTGQNALLQAKDFDKTTELTGLVLTKLDGSSKGGVVLAIRNEMNLPVK 387 Query: 288 FLGVGEGINDLEPFVAKDFS 307 +G+GE DL F A +++ Sbjct: 388 LVGLGERAEDLADFDAANYA 407 >gi|293374743|ref|ZP_06621051.1| signal recognition particle-docking protein FtsY [Turicibacter sanguinis PC909] gi|325837606|ref|ZP_08166453.1| signal recognition particle-docking protein FtsY [Turicibacter sp. HGF1] gi|292646657|gb|EFF64659.1| signal recognition particle-docking protein FtsY [Turicibacter sanguinis PC909] gi|325490908|gb|EGC93207.1| signal recognition particle-docking protein FtsY [Turicibacter sp. HGF1] Length = 335 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/189 (49%), Positives = 128/189 (67%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 VIL VGVNGVGKTT I K++ ++ G V+LAAGDTFR+ AI+QL++W DR D V Sbjct: 128 VILFVGVNGVGKTTSIAKIAHQLKGKGKSVLLAAGDTFRAGAIEQLQVWGDRIGVDVVSL 187 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 GSD +A+ ++A K+A+A+ VDVL+ DTAGRL N LM + K+ RV++R P APH Sbjct: 188 SEGSDPSAVMFDAIKEAKARNVDVLLCDTAGRLQNKVNLMKELEKIKRVIEREVPGAPHD 247 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 L V+DATTGQN + Q + F +G+++TK+DGTA+GG ++ I IP+ F+G+G Sbjct: 248 TLLVIDATTGQNGMNQAKAFLEATDVSGIVLTKLDGTAKGGIVLAIRNEIGIPIKFVGLG 307 Query: 293 EGINDLEPF 301 E DL F Sbjct: 308 EKAEDLVHF 316 >gi|309806859|ref|ZP_07700846.1| signal recognition particle-docking protein FtsY [Lactobacillus iners LactinV 03V1-b] gi|309809451|ref|ZP_07703309.1| signal recognition particle-docking protein FtsY [Lactobacillus iners SPIN 2503V10-D] gi|312874530|ref|ZP_07734555.1| signal recognition particle-docking protein FtsY [Lactobacillus iners LEAF 2053A-b] gi|329921144|ref|ZP_08277666.1| signal recognition particle-docking protein FtsY [Lactobacillus iners SPIN 1401G] gi|308166725|gb|EFO68917.1| signal recognition particle-docking protein FtsY [Lactobacillus iners LactinV 03V1-b] gi|308170123|gb|EFO72158.1| signal recognition particle-docking protein FtsY [Lactobacillus iners SPIN 2503V10-D] gi|311089921|gb|EFQ48340.1| signal recognition particle-docking protein FtsY [Lactobacillus iners LEAF 2053A-b] gi|328934782|gb|EGG31273.1| signal recognition particle-docking protein FtsY [Lactobacillus iners SPIN 1401G] Length = 337 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 101/261 (38%), Positives = 148/261 (56%), Gaps = 10/261 (3%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---- 109 I +D+G A+ + +EL + K+V ++L +V I + L+ L + N S Sbjct: 72 IEADVGYETAEMLTDELRNEAKLKNVKDSKLLKNV---IVEKLVELYEQNNTKDSKLILK 128 Query: 110 ---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P V L VGVNG GKTT IGKL+KK+ DAG VML A DTFR+ A++QLK W R Sbjct: 129 TGDMPAVFLFVGVNGAGKTTTIGKLAKKLKDAGNSVMLVAADTFRAGAVEQLKAWGQRVD 188 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + +D +++ YE + A +D L++DTAGRL N LM + K+ R + R Sbjct: 189 VQVISGNTNADPSSVVYEGLECAVNNHIDYLLVDTAGRLQNKVNLMNELDKINRTIHRKI 248 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P P +L V+D +TGQNAL Q + F TGL++TK+DG+++GG ++ I +PV Sbjct: 249 PDQPQEILLVIDGSTGQNALNQAKEFDKTTKLTGLVLTKLDGSSKGGIVLAIRNEMSLPV 308 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GE DL F A+ F+ Sbjct: 309 KLVGLGEKAEDLAEFDAEKFA 329 >gi|304436509|ref|ZP_07396483.1| cell division protein FtsY [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370555|gb|EFM24206.1| cell division protein FtsY [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 310 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 103/196 (52%), Positives = 135/196 (68%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VILVVG NGVGKTT IGKLS G V+LAA DTFR+AAI+QL++W R + Sbjct: 102 PTVILVVGTNGVGKTTTIGKLSAYYRHQGKSVLLAAADTFRAAAIEQLEVWGKRADVQVI 161 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 GSD AA+ ++A + A+A++ +++I+DTAGRL S LM + K+ RV+ R P AP Sbjct: 162 KHGEGSDPAAVVFDALQAAKARRTELVIVDTAGRLQTKSNLMQELEKIYRVIGREVPGAP 221 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 H L VLDA TGQNA+ Q E+F VA TG+++TK+DGTA+GG I I IP+ ++G Sbjct: 222 HETLLVLDAGTGQNAISQAELFSQVAPVTGVVLTKLDGTAKGGVTIGITAQLDIPIKWIG 281 Query: 291 VGEGINDLEPFVAKDF 306 VGEGI+DL PF A+DF Sbjct: 282 VGEGIDDLRPFHAEDF 297 >gi|256843375|ref|ZP_05548863.1| cell division protein [Lactobacillus crispatus 125-2-CHN] gi|256614795|gb|EEU19996.1| cell division protein [Lactobacillus crispatus 125-2-CHN] Length = 415 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 99/259 (38%), Positives = 153/259 (59%), Gaps = 5/259 (1%) Query: 54 IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 I SD+G A+++ +EL L ++D + ++ + +L K + ++ Sbjct: 149 IESDVGYETAEQLTDELREEAKLQNAKSRDELKRVIVEKLVDLYDKGGNSEDEQLTYNAE 208 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +P+V L+VGVNG GKTT IGKL+K+ D G V+LAA DTFR+ A++QL W R Sbjct: 209 AKPNVYLLVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLVEWGKRVDVP 268 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V + +D A++ Y+A ++A +K D L++DTAGRL N LMA + K+ R +K+L P Sbjct: 269 VVTGKEKADPASVVYDATERAIREKADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLPD 328 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P L VLD +TGQNAL Q + F TGL++TK+DG+++GG ++ I +PV Sbjct: 329 QPTETLLVLDGSTGQNALLQAKDFDKTTELTGLVLTKLDGSSKGGVVLAIRNEMNLPVKL 388 Query: 289 LGVGEGINDLEPFVAKDFS 307 +G+GE DL F A +++ Sbjct: 389 VGLGERAEDLADFDAANYA 407 >gi|237753290|ref|ZP_04583770.1| signal recognition particle protein [Helicobacter winghamensis ATCC BAA-430] gi|229375557|gb|EEO25648.1| signal recognition particle protein [Helicobacter winghamensis ATCC BAA-430] Length = 296 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 111/298 (37%), Positives = 169/298 (56%), Gaps = 11/298 (3%) Query: 19 KGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78 K F T K + I D++ R +E LE++LI +D+ + + I+ L + + Sbjct: 4 KVFKKTLEKTTQNIRDLLPKAR-KKLSKEVLEEILIATDMDYDLVEMILSPLGNEISKNE 62 Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138 + V + E + + S +P V L+VGVNG GKTT I KL+ Sbjct: 63 LEVALLRLFRGESYYDKVQA------KKVSAKPCVDLIVGVNGAGKTTTIAKLANAYKKQ 116 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 G V+L AGDTFR+AAI+Q+K+W DR V S+IG D +A+A++ A AK +DV I Sbjct: 117 GKSVILGAGDTFRAAAIEQIKLWGDRLGVPVVASQIGHDPSAVAFDVITSAVAKNLDVAI 176 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAG 257 IDTAGRLHN S L + K++R+ + APH + +LD T G ++L Q ++F+ + G Sbjct: 177 IDTAGRLHNQSNLQQELEKIVRICNKAKEGAPHRKILILDGTQGTSSLDQAKIFNQTLGG 236 Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G+I+TK+DGT++GG + ++ ++P+ ++GVGEG DL VA D +A I LD Sbjct: 237 VDGVIITKLDGTSKGGAIFSMIYALRVPILYIGVGEGAEDL---VAFDENAYIQMLLD 291 >gi|239618078|ref|YP_002941400.1| signal recognition particle-docking protein FtsY [Kosmotoga olearia TBF 19.5.1] gi|239506909|gb|ACR80396.1| signal recognition particle-docking protein FtsY [Kosmotoga olearia TBF 19.5.1] Length = 305 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 129/299 (43%), Positives = 193/299 (64%), Gaps = 12/299 (4%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + ++ K+ +G T + + +I+S +LD EELE+LLI SD+GV ++++E L Sbjct: 1 MGFLSKIKEGLKKTRDSVFSKVKNILSLEKLDAETLEELEELLILSDMGVETVEEVIERL 60 Query: 71 LTK-RYAKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 K + KD ++++VL D+ L + P +P+V+L+VGVNG GKTT Sbjct: 61 KEKVKEVKDPNTALKKVLIDI--LKEEEEEKKEAP-------KPYVLLIVGVNGTGKTTT 111 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKLS+ + G +V+LAA DTFR+AA++QLK+W++R ADF+ G+DAAA+AY+A Sbjct: 112 IGKLSRIFKEQGKRVVLAAADTFRAAAVEQLKVWSERVGADFISQGQGADAAAVAYDAVM 171 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A++K D++IIDTAGRLH LM + K+ R + R+ P APH V V+DATTGQN L Sbjct: 172 HAKSKGKDIVIIDTAGRLHTRHNLMEELKKVHRTIGRVLPGAPHDVWLVIDATTGQNGLV 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q + F TG+++TK+DGTA+GG + I K PV ++GVGEG++DL+PF ++F Sbjct: 232 QAKKFAETVNITGIVLTKLDGTAKGGIVFAIKKELKTPVKYIGVGEGVDDLKPFDPEEF 290 >gi|237749681|ref|ZP_04580161.1| signal recognition particle protein [Helicobacter bilis ATCC 43879] gi|229374719|gb|EEO25110.1| signal recognition particle protein [Helicobacter bilis ATCC 43879] Length = 290 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 104/269 (38%), Positives = 156/269 (57%), Gaps = 13/269 (4%) Query: 49 LEDLLIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 LE++LI SDI + +K+++ L R A V+++R S K + Sbjct: 28 LEEILIESDINYEIIEKMLDNLDENVSRDALRVAIERFFRGES--------YYDKIRFQE 79 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P V LV GVNG GKTT I KL+K+ D KV+L AGDTFR+AAI+QL++W+++ Sbjct: 80 IEESPIVYLVFGVNGAGKTTTIAKLAKRFKDNNKKVILGAGDTFRAAAIEQLQLWSEKIG 139 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + V ++ D +ALA++ A+A+ +D IIDTAGRL N + L + K+ + + Sbjct: 140 VEIVTTKHAHDPSALAFDTINAAKARNMDYAIIDTAGRLPNQTNLKNELIKISKTCSKAL 199 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 + P + VLD T G +++ Q +FH G G+I+TKMDGT++GG ++ I+ K+P+ Sbjct: 200 ENKPFHKILVLDGTQGSSSIEQARIFHEALGLDGIIITKMDGTSKGGAILSIIHEFKLPI 259 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 FLGVGE ++L F KDF I G LD Sbjct: 260 LFLGVGEKADELIAFEEKDF---INGLLD 285 >gi|295693170|ref|YP_003601780.1| cell division protein, signal recognition particle (docking protein) ftsy [Lactobacillus crispatus ST1] gi|295031276|emb|CBL50755.1| Cell division protein, signal recognition particle (Docking protein) FtsY [Lactobacillus crispatus ST1] Length = 413 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 101/260 (38%), Positives = 155/260 (59%), Gaps = 7/260 (2%) Query: 54 IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF 107 I SD+G A+++ +EL L ++D ++RV+ + + +L K + ++ Sbjct: 147 IESDVGYETAEQLTDELREEAKLQNAKSRD-DLKRVIVEKLVDLYDKGGNSEDEQLTYNA 205 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 +P+V L VGVNG GKTT IGKL+K+ D G V+LAA DTFR+ A++QL W R Sbjct: 206 EAKPNVYLFVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLVEWGKRVDV 265 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V + +D A++ Y+A ++A +K D L++DTAGRL N LMA + K+ R +K+L P Sbjct: 266 PVVTGKEKADPASVVYDATERAIGEKADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLP 325 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P L VLD +TGQNAL Q + F TGL++TK+DG+++GG ++ I +PV Sbjct: 326 DQPTETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMNLPVK 385 Query: 288 FLGVGEGINDLEPFVAKDFS 307 +G+GE DL F A +++ Sbjct: 386 LVGLGERAEDLADFDAANYA 405 >gi|218283536|ref|ZP_03489526.1| hypothetical protein EUBIFOR_02116 [Eubacterium biforme DSM 3989] gi|218215804|gb|EEC89342.1| hypothetical protein EUBIFOR_02116 [Eubacterium biforme DSM 3989] Length = 319 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 111/281 (39%), Positives = 161/281 (57%), Gaps = 22/281 (7%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKD--------VSVQRVLYDVSEL 91 +DD + E++ +L+ SD+G+ AQKIV+ + ++ KD +S+ YD S Sbjct: 45 IDDDLLEQIMVILLESDVGIHTAQKIVDAFESNGKHVKDYDSMLDYLISILYDFYDESS- 103 Query: 92 IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 +P + P VIL+VGVNG GKTT KL + + G KV +AA DTFR Sbjct: 104 --------DEPIKIN-EEGPTVILMVGVNGSGKTTTSAKLIQYYKEQGKKVAVAAADTFR 154 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 + AIDQ+ WA+R + ++ D +++ +A + A+ VD+LI DTAGRL N + L Sbjct: 155 AGAIDQIDTWANRLGVPCIKGKMNQDPSSVLVDACRYAKENDVDILICDTAGRLQNKTNL 214 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M + KM RV++R AP V VLDATTGQN + Q ++F TG+++TKMDGTA+ Sbjct: 215 MNELSKMHRVVQREIEGAPQEVWLVLDATTGQNGISQAKVFLEATDVTGIVLTKMDGTAK 274 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 GG ++ I +PV FLG+GE DL PF D +A + G Sbjct: 275 GGVVLAIRDLLHLPVRFLGLGEKPADLRPF---DINAFLMG 312 >gi|269219657|ref|ZP_06163511.1| signal recognition particle-docking protein FtsY [Actinomyces sp. oral taxon 848 str. F0332] gi|269210899|gb|EEZ77239.1| signal recognition particle-docking protein FtsY [Actinomyces sp. oral taxon 848 str. F0332] Length = 405 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 123/299 (41%), Positives = 180/299 (60%), Gaps = 19/299 (6%) Query: 20 GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79 GF + LK I+S L EE+ED L+ +D+G+ +I++ L K+ K V Sbjct: 118 GFGNALLK-------ILSRGDLSPADWEEIEDTLLMADVGLEATTQIMDNL--KKRTK-V 167 Query: 80 SVQRVLYDVSELIHKMLMPLSKPFNWDFSH------RPHVILVVGVNGVGKTTVIGKLSK 133 R V ++ + L+ L P H P IL+VGVNG GKTT +GKL++ Sbjct: 168 EGTRDPERVKAILREELLELIDPAADRSLHLERIDGDPASILMVGVNGTGKTTTVGKLAR 227 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAK 192 + G +V+L A DTFR+AA DQL+ W +R D V S+ G+D A++A++A + + Sbjct: 228 VLVAEGSRVLLGAADTFRAAAADQLQTWGERVGVDVVRSDREGADPASVAFDAIDKGRET 287 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 VDV+++DTAGRL N S LM +GK+ RV+ + P + VL VLDATTGQN +RQ E+F Sbjct: 288 DVDVVLVDTAGRLQNKSGLMDELGKIKRVMSKRVPV--NEVLLVLDATTGQNGMRQAEVF 345 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 V G TG+++TK+DGTA+GG +I + +PV F+G+GEG++DL PF A+ F +T Sbjct: 346 AEVTGITGIVLTKLDGTAKGGIVISVQRELGVPVKFVGLGEGVDDLAPFDAEGFVDALT 404 >gi|302191492|ref|ZP_07267746.1| signal recognition particle GTPase [Lactobacillus iners AB-1] gi|312871862|ref|ZP_07731946.1| signal recognition particle-docking protein FtsY [Lactobacillus iners LEAF 3008A-a] gi|311092584|gb|EFQ50944.1| signal recognition particle-docking protein FtsY [Lactobacillus iners LEAF 3008A-a] Length = 337 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 101/261 (38%), Positives = 148/261 (56%), Gaps = 10/261 (3%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---- 109 I +D+G A+ + +EL + K+V ++L +V I + L+ L + N S Sbjct: 72 IEADVGYETAELLTDELRNEAKLKNVKDSKLLKNV---IVEKLVELYEQNNTKDSKLILK 128 Query: 110 ---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P V L VGVNG GKTT IGKL+KK+ DAG VML A DTFR+ A++QLK W R Sbjct: 129 TGDMPAVFLFVGVNGAGKTTTIGKLAKKLKDAGNSVMLVAADTFRAGAVEQLKAWGQRVD 188 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + +D +++ YE + A +D L++DTAGRL N LM + K+ R + R Sbjct: 189 VQVISGNTNADPSSVVYEGLECAVNNHIDYLLVDTAGRLQNKVNLMNELDKINRTIHRKI 248 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P P +L V+D +TGQNAL Q + F TGL++TK+DG+++GG ++ I +PV Sbjct: 249 PDQPQEILLVIDGSTGQNALNQAKEFDKTTKLTGLVLTKLDGSSKGGIVLAIRNEMSLPV 308 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GE DL F A+ F+ Sbjct: 309 KLVGLGEKAEDLAEFDAEKFA 329 >gi|309808659|ref|ZP_07702551.1| signal recognition particle-docking protein FtsY [Lactobacillus iners LactinV 01V1-a] gi|308168133|gb|EFO70259.1| signal recognition particle-docking protein FtsY [Lactobacillus iners LactinV 01V1-a] Length = 337 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 101/261 (38%), Positives = 148/261 (56%), Gaps = 10/261 (3%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---- 109 I +D+G A+ + +EL + K+V ++L +V I + L+ L + N S Sbjct: 72 IEADVGYDTAEMLTDELRNEAKLKNVKDSKLLKNV---IVEKLVELYEQNNTKDSKLILK 128 Query: 110 ---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P V L VGVNG GKTT IGKL+KK+ DAG VML A DTFR+ A++QLK W R Sbjct: 129 TGDMPAVFLFVGVNGAGKTTTIGKLAKKLKDAGNSVMLVAADTFRAGAVEQLKAWGQRVD 188 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + +D +++ YE + A +D L++DTAGRL N LM + K+ R + R Sbjct: 189 VQVISGNTNADPSSVVYEGLECAVKNHIDYLLVDTAGRLQNKVNLMNELDKINRTIHRKI 248 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P P +L V+D +TGQNAL Q + F TGL++TK+DG+++GG ++ I +PV Sbjct: 249 PDQPQEILLVIDGSTGQNALNQAKEFDKTTKLTGLVLTKLDGSSKGGIVLAIRNEMSLPV 308 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GE DL F A+ F+ Sbjct: 309 KLVGLGEKAEDLAEFDAEKFA 329 >gi|307721358|ref|YP_003892498.1| signal recognition particle-docking protein FtsY [Sulfurimonas autotrophica DSM 16294] gi|306979451|gb|ADN09486.1| signal recognition particle-docking protein FtsY [Sulfurimonas autotrophica DSM 16294] Length = 292 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 106/297 (35%), Positives = 170/297 (57%), Gaps = 15/297 (5%) Query: 20 GFASTSL-KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78 GF SL K E I + +++ ++ELED+L+ +D+ A+ + I+ E+ + ++ Sbjct: 3 GFIKKSLNKTVEAIKTVAPKKKIT-FTKDELEDILLEADVEYALVEIILNEIYQDKITRE 61 Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138 + ++L ++ + P P P V L+VGVNG GKTT I KL+ K Sbjct: 62 ILRSKLLATLAYTSYTE--PQFTP--------PFVELIVGVNGAGKTTTISKLAYKYKQE 111 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 G KV+L AGDTFR+AAI+QL +WA++ V S+ G D++A+AY+A A+AK D +I Sbjct: 112 GKKVLLGAGDTFRAAAIEQLTLWANKLDIPIVASKQGHDSSAVAYDAIDSAKAKGFDNVI 171 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 IDTAGRLH + L + K+ R+ + AP + ++D T G +A+ Q + F+ + G Sbjct: 172 IDTAGRLHTQTNLANELKKIKRICDKAHKGAPQRTVLIIDGTQGNSAISQAKAFNEMIGI 231 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G+I+TK+DGTA+GG + I ++P+ ++G GE +L F +F + G LD Sbjct: 232 DGIIITKLDGTAKGGSIFSIAYALELPILYVGTGEQPENLTSFDKYEF---VDGLLD 285 >gi|259501535|ref|ZP_05744437.1| signal recognition particle-docking protein FtsY [Lactobacillus iners DSM 13335] gi|259167053|gb|EEW51548.1| signal recognition particle-docking protein FtsY [Lactobacillus iners DSM 13335] Length = 345 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 101/261 (38%), Positives = 148/261 (56%), Gaps = 10/261 (3%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---- 109 I +D+G A+ + +EL + K+V ++L +V I + L+ L + N S Sbjct: 80 IEADVGYETAELLTDELRNEAKLKNVKDSKLLKNV---IVEKLVELYEQNNTKDSKLILK 136 Query: 110 ---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P V L VGVNG GKTT IGKL+KK+ DAG VML A DTFR+ A++QLK W R Sbjct: 137 TGDMPAVFLFVGVNGAGKTTTIGKLAKKLKDAGNSVMLVAADTFRAGAVEQLKAWGQRVD 196 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + +D +++ YE + A +D L++DTAGRL N LM + K+ R + R Sbjct: 197 VQVISGNTNADPSSVVYEGLECAVNNHIDYLLVDTAGRLQNKVNLMNELDKINRTIHRKI 256 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P P +L V+D +TGQNAL Q + F TGL++TK+DG+++GG ++ I +PV Sbjct: 257 PDQPQEILLVIDGSTGQNALNQAKEFDKTTKLTGLVLTKLDGSSKGGIVLAIRNEMSLPV 316 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GE DL F A+ F+ Sbjct: 317 KLVGLGEKAEDLAEFDAEKFA 337 >gi|269127634|ref|YP_003301004.1| signal recognition particle-docking protein FtsY [Thermomonospora curvata DSM 43183] gi|268312592|gb|ACY98966.1| signal recognition particle-docking protein FtsY [Thermomonospora curvata DSM 43183] Length = 389 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 120/288 (41%), Positives = 173/288 (60%), Gaps = 15/288 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI-H 93 ++S LD+ +E+ED LI +DIGVAVA++I E L T+ V R +V L+ Sbjct: 106 LLSRDTLDEDAWDEIEDTLISADIGVAVAREITEALRTR---VQVMGARTPEEVRALLRE 162 Query: 94 KMLMPLSKPFNWDFSHR---------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 ++L ++ F+ R P V++VVGVNG GKTT GKL++ + G V+L Sbjct: 163 ELLRQVTNGFDEKTDRRLRTARHGDRPAVVMVVGVNGTGKTTTCGKLARVLVGDGNTVLL 222 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 A DTFR+AA DQL+ W R A+ V G+D ++A++A +Q KVD +IIDTAGR Sbjct: 223 GAADTFRAAAADQLETWGKRVGAEVVRKGEGADPGSVAFDAVRQGIEGKVDTVIIDTAGR 282 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 LH + LM +GK+ RV+++ VL VLDATTGQN ++Q +F V TG+++T Sbjct: 283 LHTKTGLMDELGKVKRVVEK--QATVDEVLLVLDATTGQNGMQQARVFAEVVNVTGIVLT 340 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 K+DGTA+GG +I + +PV +G+GEG +DL PF A+ F I G Sbjct: 341 KLDGTAKGGIVIAVQRELGVPVKLVGLGEGPDDLAPFEAEPFVDAIIG 388 >gi|312984416|ref|ZP_07791751.1| signal recognition particle-docking protein FtsY [Lactobacillus crispatus CTV-05] gi|310894191|gb|EFQ43278.1| signal recognition particle-docking protein FtsY [Lactobacillus crispatus CTV-05] Length = 432 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 101/260 (38%), Positives = 155/260 (59%), Gaps = 7/260 (2%) Query: 54 IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF 107 I SD+G A+++ EL L ++D ++RV+ + + +L K + ++ Sbjct: 166 IESDVGYETAEQLTNELREEAKLQNAKSRD-DLKRVIVEKLVDLYDKGGNSEDEQLTYNA 224 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 +P+V L+VGVNG GKTT IGKL+K+ D G V+LAA DTFR+ A++QL W R Sbjct: 225 EAKPNVYLLVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLVEWGKRVDV 284 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V + +D A++ Y+A ++A +K D L++DTAGRL N LMA + K+ R +K+L P Sbjct: 285 PVVTGKEKADPASVVYDATERAIREKADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLP 344 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P L VLD +TGQNAL Q + F TGL++TK+DG+++GG ++ I +PV Sbjct: 345 DQPTETLLVLDGSTGQNALLQAKDFDKTTELTGLVLTKLDGSSKGGVVLAIRNEMNLPVK 404 Query: 288 FLGVGEGINDLEPFVAKDFS 307 +G+GE DL F A +++ Sbjct: 405 LVGLGERAEDLADFDAANYA 424 >gi|309804312|ref|ZP_07698389.1| signal recognition particle-docking protein FtsY [Lactobacillus iners LactinV 11V1-d] gi|309805486|ref|ZP_07699531.1| signal recognition particle-docking protein FtsY [Lactobacillus iners LactinV 09V1-c] gi|308163715|gb|EFO65985.1| signal recognition particle-docking protein FtsY [Lactobacillus iners LactinV 11V1-d] gi|308165137|gb|EFO67375.1| signal recognition particle-docking protein FtsY [Lactobacillus iners LactinV 09V1-c] Length = 300 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 101/261 (38%), Positives = 148/261 (56%), Gaps = 10/261 (3%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---- 109 I +D+G A+ + +EL + K+V ++L +V I + L+ L + N S Sbjct: 35 IEADVGYETAEMLTDELRNEAKLKNVKDSKLLKNV---IVEKLVELYEQNNTKDSKLILK 91 Query: 110 ---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P V L VGVNG GKTT IGKL+KK+ DAG VML A DTFR+ A++QLK W R Sbjct: 92 TGDMPAVFLFVGVNGAGKTTTIGKLAKKLKDAGNSVMLVAADTFRAGAVEQLKAWGQRVD 151 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + +D +++ YE + A +D L++DTAGRL N LM + K+ R + R Sbjct: 152 VQVISGNTNADPSSVVYEGLECAVKNHIDYLLVDTAGRLQNKVNLMNELDKINRTIHRKI 211 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P P +L V+D +TGQNAL Q + F TGL++TK+DG+++GG ++ I +PV Sbjct: 212 PDQPQEILLVIDGSTGQNALNQAKEFDKTTKLTGLVLTKLDGSSKGGIVLAIRNEMSLPV 271 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GE DL F A+ F+ Sbjct: 272 KLVGLGEKAEDLAEFDAEKFA 292 >gi|227878858|ref|ZP_03996764.1| signal recognition particle docking protein FtsY [Lactobacillus crispatus JV-V01] gi|262046952|ref|ZP_06019912.1| cell division protein [Lactobacillus crispatus MV-3A-US] gi|227861549|gb|EEJ69162.1| signal recognition particle docking protein FtsY [Lactobacillus crispatus JV-V01] gi|260572934|gb|EEX29494.1| cell division protein [Lactobacillus crispatus MV-3A-US] Length = 415 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 101/260 (38%), Positives = 155/260 (59%), Gaps = 7/260 (2%) Query: 54 IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF 107 I SD+G A+++ +EL L ++D ++RV+ + + +L K + ++ Sbjct: 149 IESDVGYETAEQLTDELREEAKLQNAKSRD-DLKRVIVEKLVDLYDKGGNSEDEQLTYNA 207 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 +P+V L VGVNG GKTT IGKL+K+ D G V+LAA DTFR+ A++QL W R Sbjct: 208 EAKPNVYLFVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLVEWGKRVDV 267 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V + +D A++ Y+A ++A +K D L++DTAGRL N LMA + K+ R +K+L P Sbjct: 268 PVVTGKEKADPASVVYDATERAIREKADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLP 327 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P L VLD +TGQNAL Q + F TGL++TK+DG+++GG ++ I +PV Sbjct: 328 DQPTETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMNLPVK 387 Query: 288 FLGVGEGINDLEPFVAKDFS 307 +G+GE DL F A +++ Sbjct: 388 LVGLGERAEDLADFDAANYA 407 >gi|170079379|ref|YP_001736017.1| signal recognition particle-docking protein [Synechococcus sp. PCC 7002] gi|169887048|gb|ACB00762.1| signal recognition particle-docking protein [Synechococcus sp. PCC 7002] Length = 543 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 179/303 (59%), Gaps = 5/303 (1%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 E + W++KL G T L + ++ L+D E+E LL+++D+G+ I+E Sbjct: 234 EEIEWLKKLRDGLGKTRRSLVNQLKAVVGQGPLNDEAVLEIESLLLQADVGIEATDYIIE 293 Query: 69 ELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVVGVNGVGK 124 L + + + + + + E++ +L PL+K + +F+ +V ++ GVNG GK Sbjct: 294 TLQERLRQEALPPEAAIAYLKEILRDILDKPLAKLPSTEFAPEADKLNVWMLTGVNGAGK 353 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAY 183 TT IGKL+ + +G + ++AA DTFR+AA++Q+K+W +RT + + +D AA+ + Sbjct: 354 TTTIGKLAHLANQSGYRCVIAAADTFRAAAVEQVKVWGERTDTPVIANPGKNTDPAAVVF 413 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 + AQA++ +L++DTAGRL N LM + K+ R++ + P A L VLDAT GQ Sbjct: 414 DGITAAQARQAQILLVDTAGRLQNKKNLMDELAKIRRIVDKKAPDAQVESLLVLDATLGQ 473 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 N LRQ ++F A +G+++TK+DGTARGG + + +P+ F+G GEGI DL PF + Sbjct: 474 NGLRQAQVFSEAAKLSGVVLTKLDGTARGGVALAVSQQLGLPIRFIGAGEGIEDLRPFSS 533 Query: 304 KDF 306 +F Sbjct: 534 YEF 536 >gi|293363566|ref|ZP_06610322.1| signal recognition particle-docking protein FtsY [Mycoplasma alligatoris A21JP2] gi|292552915|gb|EFF41669.1| signal recognition particle-docking protein FtsY [Mycoplasma alligatoris A21JP2] Length = 350 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 104/267 (38%), Positives = 159/267 (59%), Gaps = 6/267 (2%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSELIHKM 95 ++D+ +ELE++LI SDI + KI+E++ + ++ + ++ D LI+ Sbjct: 66 KIDEDYFDELEEILIMSDINTELVFKIIEKIKKEVKTNNIDDPKLIGEIVADQMFLIYTN 125 Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 ++ + + R +VI++VGVNG GKTT I KL+ K G KV++AA DTFR+ A+ Sbjct: 126 KTIVNTTLDIK-NDRLNVIVMVGVNGSGKTTSIAKLAYKYKQLGKKVIIAAADTFRAGAV 184 Query: 156 DQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 +QL +WA R D V + G D +++ Y++ A D+LIIDTAGRL N LM Sbjct: 185 NQLDVWAQRIGVDIVKPDKEGQDPSSVVYKSLDVATKNDYDLLIIDTAGRLQNKINLMKE 244 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + KM V+++ APH L VLD TTGQN L Q +F V +G+I+TKMDGT++GG Sbjct: 245 LEKMFSVIRKFVESAPHEALLVLDGTTGQNGLSQARVFKEVCELSGIILTKMDGTSKGGI 304 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301 ++ I + V FLG+GE ++DL+ F Sbjct: 305 VLSIKDEFDLNVKFLGLGEKLDDLKEF 331 >gi|256832211|ref|YP_003160938.1| signal recognition particle-docking protein FtsY [Jonesia denitrificans DSM 20603] gi|256685742|gb|ACV08635.1| signal recognition particle-docking protein FtsY [Jonesia denitrificans DSM 20603] Length = 391 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 122/302 (40%), Positives = 185/302 (61%), Gaps = 16/302 (5%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-- 73 +L AS+ L + + ++S + D +++EDLL+ +D+GV A ++++ L T+ Sbjct: 86 RLRHRLASSGSPLGQRLLVMLSQDHIADSDWDDIEDLLLMADLGVGPATELIDALRTRVR 145 Query: 74 -RYAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFS-----HRPHVILVVGVNGVGKTT 126 KD R L V E + ++ P L + + D S H P VI+VVGVNG GKTT Sbjct: 146 VEAIKDPVALRAL--VREELLTLVDPTLDRSLHLDTSVSTPPHAPAVIVVVGVNGTGKTT 203 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEA 185 IGKL++ + G V+L A DTFR+AA DQL+ W ++ V ++ G+D A++A++A Sbjct: 204 TIGKLTRVLVAEGKDVLLGAADTFRAAAADQLQTWGEQVGVRTVRADRDGADPASVAFDA 263 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS-VLQVLDATTGQN 244 +Q + VDV+++DTAGRL N + LM + K+ RV+ R AP S VL VLDATTGQN Sbjct: 264 VRQGRTNSVDVVVVDTAGRLQNKTGLMDELSKITRVITR---EAPISEVLLVLDATTGQN 320 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 + Q +F VAG TG+++TK+DGTARGG ++ + +PV +G+GEG +DL PF + Sbjct: 321 GMNQARVFSEVAGVTGIVLTKLDGTARGGIVVAVQRELGVPVKLVGLGEGPDDLAPFDPE 380 Query: 305 DF 306 +F Sbjct: 381 EF 382 >gi|182417262|ref|ZP_02948615.1| signal recognition particle-docking protein FtsY [Clostridium butyricum 5521] gi|237668131|ref|ZP_04528115.1| signal recognition particle-docking protein FtsY [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378908|gb|EDT76421.1| signal recognition particle-docking protein FtsY [Clostridium butyricum 5521] gi|237656479|gb|EEP54035.1| signal recognition particle-docking protein FtsY [Clostridium butyricum E4 str. BoNT E BL5262] Length = 302 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 116/256 (45%), Positives = 159/256 (62%), Gaps = 4/256 (1%) Query: 56 SDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114 SDIG+ I+E L K R K Q V + E+I +L+ S D V+ Sbjct: 49 SDIGMDTTIDIIERLRNKIRKEKINDPQEVKPALKEVIRDILLEGSYE---DNDEDKKVM 105 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 L++GVNGVGKTT IGK++ K G KV+LAA DTFR+AAIDQL++W+ R D V + Sbjct: 106 LIIGVNGVGKTTSIGKIAAKNKADGKKVLLAAADTFRAAAIDQLEVWSKRAEVDLVKHQE 165 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 GSD AA+ ++A + +A+KVD+LI DTAGRLHN LM + K+ R++ R L Sbjct: 166 GSDPAAVVFDAIEATKARKVDLLICDTAGRLHNKKNLMNELEKINRIIDRELSDYKKETL 225 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VLDATTGQNA+ Q + F G+I+TK+DGTA+GG +I I + IPV ++GVGEG Sbjct: 226 LVLDATTGQNAVIQAKQFMEACPIDGIILTKLDGTAKGGVVISIKQSLNIPVRYIGVGEG 285 Query: 295 INDLEPFVAKDFSAVI 310 I+DL+ F A+ F+ + Sbjct: 286 IDDLQKFDAEGFAEAL 301 >gi|148655204|ref|YP_001275409.1| signal recognition particle-docking protein FtsY [Roseiflexus sp. RS-1] gi|148567314|gb|ABQ89459.1| signal recognition particle-docking protein FtsY [Roseiflexus sp. RS-1] Length = 326 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 108/266 (40%), Positives = 156/266 (58%), Gaps = 4/266 (1%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102 D + ++LE LLI++D+GV +V TK V+R L +M+ L + Sbjct: 55 DDLWDDLEALLIQADVGVETTMYLVNR--TKDRCNRYGVKRAREARDMLKAEMVRVLQEQ 112 Query: 103 FNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKI 160 RP++ILVVGVNG GKTT+I KL+ ++ + G +V+LAAGDTFR+AA +QL+ Sbjct: 113 ERQPQIDARPYIILVVGVNGAGKTTLIAKLAYRLKNQFGRRVLLAAGDTFRAAATEQLET 172 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 WA+R + G+D A+ Y+A + VDVLIIDTAGRLH + LM + K+ Sbjct: 173 WAERVGVPVISRGQGADPGAVVYDAIEAVSNGDVDVLIIDTAGRLHAKTNLMLELQKLRN 232 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 +++R P APH VL V+DATTGQN + Q + F T + +TK+DGTA+GG I Sbjct: 233 IIRRRFPDAPHEVLLVIDATTGQNGVLQAKSFLKAVDVTHVAVTKLDGTAKGGIAFAIAQ 292 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDF 306 + P+ ++G GE + DL F A+ F Sbjct: 293 DIERPIRYIGTGEKMTDLALFDAETF 318 >gi|315604552|ref|ZP_07879615.1| cell division protein FtsY [Actinomyces sp. oral taxon 180 str. F0310] gi|315313564|gb|EFU61618.1| cell division protein FtsY [Actinomyces sp. oral taxon 180 str. F0310] Length = 412 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 119/302 (39%), Positives = 180/302 (59%), Gaps = 16/302 (5%) Query: 23 STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82 ++S L I ++S +L EE+E+ L+ +D+G+ ++E L +R A + + Sbjct: 113 ASSGALGRAILGVLSRGKLSAADWEEIEESLLVADLGLEATDSLMEAL-KRRVAVESTTD 171 Query: 83 RVLYDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 V V E++ + L+ L P D +P VIL+VGVNG GKTT +GKL+ Sbjct: 172 EVR--VREILREELLALVGPDMDRSLDLARPTVDGCVKPAVILMVGVNGTGKTTTVGKLA 229 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQA 191 + + V+L A DTFR+AA DQL W +R D V SE G+D A++A+EA ++ Sbjct: 230 RILVADDKSVLLGAADTFRAAAADQLATWGERVGVDVVRSEREGADPASVAFEAVREGIE 289 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VDV+++DTAGRL N S LM +GK+ RV+ + P A VL VLDATTGQN ++Q E+ Sbjct: 290 RDVDVVLVDTAGRLQNKSTLMDELGKIKRVMSKQAPVA--EVLLVLDATTGQNGMKQAEV 347 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F G TG+++TK+DG+A+GG ++ + + +PV F+G+GEG +DL PF + F I Sbjct: 348 FAEATGVTGIVLTKLDGSAKGGIVVSVQRSLGVPVKFVGLGEGADDLAPFDPRGFVDAIV 407 Query: 312 GC 313 G Sbjct: 408 GT 409 >gi|295111640|emb|CBL28390.1| signal recognition particle-docking protein FtsY [Synergistetes bacterium SGP1] Length = 309 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 117/304 (38%), Positives = 179/304 (58%), Gaps = 6/304 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 +++ +L +G + GI + S DD EELED LI D+GV +++++VE L Sbjct: 1 MAFFARLKEGLKGVKERWSGGIARLFSGSSFDDAFWEELEDRLIAGDVGVELSEELVESL 60 Query: 71 LTKRYAKDVSVQRVLYDV-SELIHKMLMP---LSKPFNWDFSHRPHVILVVGVNGVGKTT 126 + A+ ++ L DV E I L+ + KPF + + P V+L+VGVNG GKTT Sbjct: 61 KGEVRARGIASPEALRDVFVERITAELLSVPGMGKPFETEPA--PQVLLMVGVNGSGKTT 118 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 GKL+ + G V+LAA DTFR+AA++QL+IW +R V GSD AA+A++A+ Sbjct: 119 SAGKLALQFKGQGKGVVLAAADTFRAAAVEQLQIWGERVGVRVVAQGQGSDPAAVAFDAW 178 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A++ D+LI+DTAGRLH+ LM + K+ RVL R + VLDA GQN++ Sbjct: 179 QAARSAGADLLIVDTAGRLHDKHNLMEELRKIQRVLVREAGEDRVQTVLVLDAVLGQNSV 238 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q E F+++ + +++TK D TA+GG ++ I +IPV +G+GE DL PF +F Sbjct: 239 AQAETFNSILPVSSIVLTKYDNTAKGGVVLAIARRLRIPVRCIGLGEAPEDLSPFDPAEF 298 Query: 307 SAVI 310 +A + Sbjct: 299 AAAL 302 >gi|210633181|ref|ZP_03297717.1| hypothetical protein COLSTE_01630 [Collinsella stercoris DSM 13279] gi|210159221|gb|EEA90192.1| hypothetical protein COLSTE_01630 [Collinsella stercoris DSM 13279] Length = 306 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 102/279 (36%), Positives = 164/279 (58%), Gaps = 9/279 (3%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100 +D+ EELED L+ D+G +A ++ ++L K++ L + L ++ Sbjct: 28 VDESFWEELEDTLVMGDMGGEIAMRVTDDLRETAARKNLKTADQLR--AALAERLREFFV 85 Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA--GLKVMLAAGDTFRSAAIDQL 158 +P + F P +L VG+NG GKTT +GK++ ++A G +V++ + DTFR+AAI+QL Sbjct: 86 EPESDIFDDTPSCVLFVGINGAGKTTTVGKIASAEAEAHAGKRVVIGSADTFRAAAIEQL 145 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 +W R + + GSD A++ Y+ +A + D+++IDTAGRLH++ LM + K+ Sbjct: 146 DVWGQRADVPVIKRDRGSDPASVCYDVLDEADKRGSDLVLIDTAGRLHSSPELMRELAKV 205 Query: 219 IRVL-KRLDPHA----PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 ++V KR + A P V+ V+D+ TGQN L Q E F+ G G+IMTK+DGTA+GG Sbjct: 206 VKVTRKRAESCAAGPMPVHVVLVIDSATGQNGLVQAEEFNDALGLDGIIMTKLDGTAKGG 265 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + + K+P+Y +GVGE + DL+ F A DF + G Sbjct: 266 IALAVAEKLKLPIYRIGVGEQVEDLQRFDAADFCRALVG 304 >gi|187778956|ref|ZP_02995429.1| hypothetical protein CLOSPO_02551 [Clostridium sporogenes ATCC 15579] gi|187772581|gb|EDU36383.1| hypothetical protein CLOSPO_02551 [Clostridium sporogenes ATCC 15579] Length = 303 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 129/307 (42%), Positives = 188/307 (61%), Gaps = 26/307 (8%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSR-----RLDDGVREELEDLLIRSDIGVAVAQKIV 67 + KL +G T K+G TD ISS +D+ + EELE++L+ +DIGV + KI+ Sbjct: 5 FFDKLKEGLTKT----KDGFTDKISSVLNLAVTIDEDLYEELEEILVTADIGVDTSIKII 60 Query: 68 EEL---LTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 + L + + KD + ++RV+ ++ + P P V+LV+GV Sbjct: 61 DRLRERVKEEKIKDPAEIKPCLKRVILEILGEEKGSITP---------DTTPKVMLVIGV 111 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGK+S K+ D G KV++AA DTFR+AAIDQL++W+ R D + + GSD Sbjct: 112 NGVGKTTSIGKVSAKLKDQGYKVIMAAADTFRAAAIDQLEVWSSRAKVDIIKHQEGSDPG 171 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ ++A + A+++K DVLI DTAGRLHN LM + K+ ++L+R A L VLDA Sbjct: 172 AVVFDAVQAAKSRKADVLICDTAGRLHNKKNLMNELSKINKILEREYGDASKETLLVLDA 231 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNA+ Q + F + G+I+TK+DGTA+GG +I I IPV +GVGEGI+DL+ Sbjct: 232 TTGQNAVIQAKEFMSACPIDGIILTKLDGTAKGGVVISIKDQLDIPVKLIGVGEGIDDLQ 291 Query: 300 PFVAKDF 306 F ++F Sbjct: 292 EFNPEEF 298 >gi|315655726|ref|ZP_07908624.1| cell division protein FtsY [Mobiluncus curtisii ATCC 51333] gi|315489790|gb|EFU79417.1| cell division protein FtsY [Mobiluncus curtisii ATCC 51333] Length = 596 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 117/305 (38%), Positives = 181/305 (59%), Gaps = 14/305 (4%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S +R+L + A K I +++S+ L+D E +ED L+ +D+GV +++ +L Sbjct: 291 SRLRRLKERLAGKG-KFGRAILNVLSNADLEDSDWEAIEDELLAADLGVEPTVELIGKLK 349 Query: 72 TKRY---AKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 K+ KD + +R+L D+ + + + L P D + +L+VGVNG G Sbjct: 350 VKQKVAGEKDATQVRRMAKRMLTDMLDRKAERRLNLEVP--EDSPTQTAGVLLVGVNGGG 407 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALA 182 KTT +GKL++ + V+L A DTFR+AA +QL+ W DR V +E +D A++A Sbjct: 408 KTTTVGKLARLLVAERKTVVLGAADTFRAAAGEQLQTWGDRVGVPVVRAEKDQADPASVA 467 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A K A+ DV++IDTAGRL N LM +GK+ RV ++ P VL V+DATTG Sbjct: 468 FDAAKAAREAGSDVVVIDTAGRLQNKVGLMDELGKIKRVAEKQVPIT--EVLLVIDATTG 525 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL Q ++F G TG+++TK+DG+A+GG ++P+ IPV +G+GEG +DL PFV Sbjct: 526 QNALSQAKIFTEAVGVTGIVLTKLDGSAKGGVIVPLQRELGIPVKLVGLGEGPDDLAPFV 585 Query: 303 AKDFS 307 DF+ Sbjct: 586 PGDFA 590 >gi|15829145|ref|NP_326505.1| cell division protein FTSY [Mycoplasma pulmonis UAB CTIP] gi|14090089|emb|CAC13847.1| CELL DIVISION PROTEIN FTSY [Mycoplasma pulmonis] Length = 373 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 109/318 (34%), Positives = 185/318 (58%), Gaps = 12/318 (3%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVA 61 +QK L ++K G ++ + I ++ ++ +LDD EELE++LI SDI Sbjct: 50 DQKKEIAQLESVQKFVTGLNKSNSNFSKAILELQNNHVKLDDDFFEELEEILIMSDISAK 109 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM-LMPLSKPF---NWDFS-HRPHVILV 116 +A I++E+ + +++ +++ ++ ++ KM L+ +K F N ++ R +V L+ Sbjct: 110 LALLIIDEIQREVKIQNIDDPKIISEI--IVDKMFLIYANKSFIDINLNYQEQRMNVFLM 167 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD-FVCSEIG 175 VGVNG GKTT I K++K+ D K+++ AGDTFR+AA +QL+IWA+R + F S+ Sbjct: 168 VGVNGSGKTTSIAKIAKRYKDLQKKILIIAGDTFRAAASEQLEIWANRVGVEIFKASQKN 227 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 + A++ Y+ + A+ D++IIDTAGRL N LM + K+ +++ + + L Sbjct: 228 QEPASVVYQGLEYAKNNNFDLVIIDTAGRLQNKINLMNELEKINKIINKFIGRSVDESLL 287 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DATTGQN + Q F V TG+++TKMDGT++GG ++ I + V +G+GE + Sbjct: 288 VIDATTGQNGVSQARSFKEVTNLTGIVLTKMDGTSKGGIVLSIKDEFDLNVKLIGLGEKM 347 Query: 296 NDLEPFVAKDFSAVITGC 313 +DL F D + I G Sbjct: 348 DDLVDF---DLDSFIYGM 362 >gi|238926795|ref|ZP_04658555.1| signal recognition particle-docking protein FtsY [Selenomonas flueggei ATCC 43531] gi|238885327|gb|EEQ48965.1| signal recognition particle-docking protein FtsY [Selenomonas flueggei ATCC 43531] Length = 310 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 102/196 (52%), Positives = 134/196 (68%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VILVVG NGVGKTT IGKLS G V+LAA DTFR+AAI+QL++W R + Sbjct: 102 PTVILVVGTNGVGKTTTIGKLSAYYRHQGKSVLLAAADTFRAAAIEQLEVWGKRADVQVI 161 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 GSD AA+ ++A + A+A++ +++I+DTAGRL S LM + K+ RV+ R P AP Sbjct: 162 KHGEGSDPAAVVFDALQAARARRTELVIVDTAGRLQTKSNLMQELEKIYRVIGREVPGAP 221 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 H L VLDA TGQNA+ Q E+F A TG+++TK+DGTA+GG I I IP+ ++G Sbjct: 222 HETLLVLDAGTGQNAISQAELFSQAAPVTGVVLTKLDGTAKGGVTIGITAQLNIPIKWIG 281 Query: 291 VGEGINDLEPFVAKDF 306 VGEGI+DL PF A+DF Sbjct: 282 VGEGIDDLRPFHAEDF 297 >gi|113474581|ref|YP_720642.1| signal recognition particle-docking protein FtsY [Trichodesmium erythraeum IMS101] gi|110165629|gb|ABG50169.1| signal recognition particle-docking protein FtsY [Trichodesmium erythraeum IMS101] Length = 553 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 114/320 (35%), Positives = 188/320 (58%), Gaps = 12/320 (3%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V++E ++W++KL +G T L + I+ L+ E+E +L+++D+GV Sbjct: 234 QVSAEEITWLKKLRQGLDRTRRNLLNQLKAIVGQGPLNQDAVMEIESMLLQADVGVEATD 293 Query: 65 KIVEELLTKRYAKDVSVQ-------RVLYDVSELIHKMLMPLSKPFNWDFSHRP---HVI 114 I+E L K ++ + ++ ++L D+ + K L S +N F ++ Sbjct: 294 YIIETLQNKLRSEALPLKEAIAYLKKILRDILDEPFKDLEVASAAYNLTFVPEKDSLNIW 353 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE- 173 L+ GVNG GKTT IGK++ + + K ++AA DTFR+AA++QL IW R+ + + + Sbjct: 354 LLNGVNGAGKTTTIGKIAHLATKSDYKCLIAAADTFRAAAVEQLTIWGQRSEVEVIANPG 413 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +D AA+ ++A AQ++ ++L++DTAGRL N LM + K+ R++ R P A Sbjct: 414 KNTDPAAIVFDAILAAQSRNTELLLVDTAGRLQNKKNLMDELSKIHRIVNRKAPDAVVES 473 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L VLDAT GQN LRQ E+F A +G+++TK+DGTA+GG + +V +P+ F+GVGE Sbjct: 474 LLVLDATLGQNGLRQAEVFAKAAKLSGVVLTKLDGTAKGGVALAVVKQLGLPIRFIGVGE 533 Query: 294 GINDLEPFVAKDF-SAVITG 312 I DL PF + +F A+I+G Sbjct: 534 KIEDLRPFSSYEFVEALISG 553 >gi|302389627|ref|YP_003825448.1| signal recognition particle-docking protein FtsY [Thermosediminibacter oceani DSM 16646] gi|302200255|gb|ADL07825.1| signal recognition particle-docking protein FtsY [Thermosediminibacter oceani DSM 16646] Length = 298 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 122/297 (41%), Positives = 181/297 (60%), Gaps = 5/297 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L + A T L E + ++ S ++D+ EELE++LI +DIGV +K++ Sbjct: 1 MGFFERLKQSLAKTRNSLAEKVESLLKFSTKIDEETLEELEEILITADIGVDATEKLISR 60 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L K A+ + L + L ++++ +P +D P VIL+VGVNGVGKTT IG Sbjct: 61 LREKVKAEKIKSPEELKEA--LKNEIIKVFPEP-KFDIIP-PSVILIVGVNGVGKTTTIG 116 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ K G KV+LAA DTFR+AA +QL IW R D + + GSD A++ ++A + Sbjct: 117 KLAFKFKSEGKKVILAAADTFRAAATEQLSIWGQRVGVDVIKHQEGSDPASVLFDAIQAG 176 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A++ D++I DTAGRLH LM + K+ RV ++ P A S L VLDATTGQNA+ Q Sbjct: 177 KARRADIIICDTAGRLHTRKNLMEELKKLYRVSEKEYPEARISSLLVLDATTGQNAIAQA 236 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F +G+I+TK+DGTA+GG + I +PV F+GVGEG++DL+ F K F Sbjct: 237 RIFKEAVNISGIILTKLDGTAKGGVAVAIASELNLPVLFVGVGEGVDDLQEFDPKAF 293 >gi|291550079|emb|CBL26341.1| signal recognition particle-docking protein FtsY [Ruminococcus torques L2-14] Length = 313 Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 128/319 (40%), Positives = 189/319 (59%), Gaps = 12/319 (3%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64 + E + ++L G T + G+ I ++DD EELE+ LI D+GV Sbjct: 1 MGEEKKGFFKRLVSGLTKTRDNIVSGMDSIFHGFSKIDDDFYEELEETLIMGDLGVRATM 60 Query: 65 KIVEELLTK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 I+E+L K ++ K+ R L + + +M + + ++F +R V+ V+GVNG Sbjct: 61 DIIEDLKVKVKEQHIKEPIECRQLV-IDSIREQMDVGETA---YEFENRQSVVFVIGVNG 116 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT IGKL+ K+ KV+LAA DTFR+AA +QLK W++R + + + G+D A++ Sbjct: 117 VGKTTTIGKLAGKLKAQNKKVILAAADTFRAAAGEQLKEWSNRAGVEMIGGQEGADPASV 176 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 Y+A A+A++ DVL+ DTAGRLHN LM + K+ RV+ R P A L VLDATT Sbjct: 177 VYDAVAAAKARRADVLLCDTAGRLHNKKNLMEELKKINRVIDREYPDAFRETLVVLDATT 236 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL Q + F+ V TG+++TKMDGTA+GG + I IPV ++GVGE I+DL+ F Sbjct: 237 GQNALAQAKEFNEVTDITGIVLTKMDGTAKGGIAVAIQSELGIPVKYIGVGETIDDLQKF 296 Query: 302 VAKDFSAVITGCLDYGEEK 320 +++F L Y EE+ Sbjct: 297 DSEEF----VNALFYREEE 311 >gi|292670931|ref|ZP_06604357.1| signal recognition particle-docking protein FtsY [Selenomonas noxia ATCC 43541] gi|292647552|gb|EFF65524.1| signal recognition particle-docking protein FtsY [Selenomonas noxia ATCC 43541] Length = 311 Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 124/302 (41%), Positives = 180/302 (59%), Gaps = 3/302 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L KG A T + I II +DD + ++LE+ L+ +D+GV + ++ Sbjct: 1 MGFFDRLKKGLAKTRENFTQNIERLIIGYADIDDELIDDLEETLLMADVGVKTTEMLISA 60 Query: 70 LLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + K++ L E I ++L K F+ P V+LVVG NGVGKTT I Sbjct: 61 VRKGIKEKEIQTPEDLIPFLEKEIVRILESGEKTFHMA-EQGPTVLLVVGTNGVGKTTTI 119 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKLS G V+LAA DTFR+AAIDQL+IW R A + SD AA+ ++A + Sbjct: 120 GKLSAYYRRQGKSVLLAAADTFRAAAIDQLEIWGKRADAQVIKHGENSDPAAVVFDALQA 179 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +D++I+DTAGRL S LM + K+ RV+ R P APH L VLDA TGQNA+ Q Sbjct: 180 AKARNIDIVIVDTAGRLQTKSNLMQELEKIYRVIGREIPGAPHETLLVLDAGTGQNAISQ 239 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 E+F A +G+++TK+DGTA+GG I I IP+ ++GVGEG++DL PF A++F + Sbjct: 240 AEIFTQAAPVSGVVLTKLDGTAKGGVTIGIKSQLSIPIKWIGVGEGMDDLRPFHAEEFVS 299 Query: 309 VI 310 + Sbjct: 300 AL 301 >gi|154148594|ref|YP_001406877.1| signal recognition particle-docking protein FtsY [Campylobacter hominis ATCC BAA-381] gi|153804603|gb|ABS51610.1| signal recognition particle-docking protein FtsY [Campylobacter hominis ATCC BAA-381] Length = 288 Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 106/289 (36%), Positives = 166/289 (57%), Gaps = 25/289 (8%) Query: 28 LKEGITDIISSRRLDDG-----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82 K+G+ I+S + + +E LED+L+ +D+ + ++I+ L + K ++ Sbjct: 5 FKKGLEKTINSMKFANAGKNKISKEILEDMLLEADVDYDIVEEILYYLPPQDDVKKDDLK 64 Query: 83 RVL-----YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137 RV+ Y+ E+ P SKPF V L++GVNG GKTT I KL+ Sbjct: 65 RVMNTYFKYESPEI------PQSKPF---------VELILGVNGAGKTTSIAKLANLYKK 109 Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197 +G V+L A DTFR+ AI+QLK+WA++ V + G D AA+A++ A AKK+D + Sbjct: 110 SGKSVILGACDTFRAGAIEQLKLWAEKIEVPIVATAQGHDPAAVAFDTISSAVAKKIDNV 169 Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257 +IDTAGRL N L + K++R+ + APH + +LDAT G N++ Q + F+ +A Sbjct: 170 LIDTAGRLQNQKNLAKELEKIVRISAKALSSAPHRKIIILDATQGNNSVIQAKAFNEIAK 229 Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G+I+TK+DGT +GG L I +IP+ ++GVGE + DL F A++F Sbjct: 230 IDGIIITKLDGTPKGGALFGIARELEIPILYIGVGEKMEDLIEFNAQNF 278 >gi|320161066|ref|YP_004174290.1| cell division protein FtsY [Anaerolinea thermophila UNI-1] gi|319994919|dbj|BAJ63690.1| cell division protein FtsY [Anaerolinea thermophila UNI-1] Length = 306 Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 113/289 (39%), Positives = 175/289 (60%), Gaps = 14/289 (4%) Query: 32 ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL 91 I + + +++ EELE +L+++D+G+ ++I++ L K VQ L EL Sbjct: 23 IATLFGATQINTETWEELEAILVQADLGIETTEEIIQAL------KQHVVQEGLTRTEEL 76 Query: 92 IHKMLMPLSKPFN----WDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 H + L + + DFS+ +P +IL+VGVNG GKTT KL + S AG V+LAA Sbjct: 77 QHALREVLIQRLDPTPVVDFSYQKPAIILLVGVNGSGKTTTAAKLGWQFSRAGKTVLLAA 136 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 DTFR+AA+DQL++W +R + + +D AA+A++A + A +KK+D++++DTAGRLH Sbjct: 137 ADTFRAAAVDQLQVWGERLGLPVIAGQPNADPAAVAFDAIQSAISKKIDIVLVDTAGRLH 196 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 LM + K+ RV+ + P APH+V VLDATTGQNAL+Q + F TG+I++K+ Sbjct: 197 TRYNLMEELKKIHRVVGKALPGAPHAVWLVLDATTGQNALQQAKAFKEAVQVTGIILSKL 256 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 D +ARGG I + +P+ + G+GE DL+ F D A + G L+ Sbjct: 257 DSSARGGMAFAIQESLGLPILYAGLGEKPEDLQVF---DREAFVNGILE 302 >gi|224373550|ref|YP_002607922.1| signal recognition particle-docking protein FtsY [Nautilia profundicola AmH] gi|223588955|gb|ACM92691.1| signal recognition particle-docking protein FtsY [Nautilia profundicola AmH] Length = 289 Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 104/299 (34%), Positives = 169/299 (56%), Gaps = 15/299 (5%) Query: 20 GFASTSL-KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78 GF L K KE + ++ S + + ++ +E+ L+ +D+ + +KI+ R ++ Sbjct: 3 GFIKKGLNKTKEALKSVVGSEKKEKLPKDLIEEALLEADMDYDLVEKIIN-----RLPEE 57 Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137 V+ ++ L ++ S P N + + +P L++GVNG GKTT I KL+ K Sbjct: 58 VTKEK-------LKKELAWVFSVPKNDIEINDKPFTFLIIGVNGAGKTTTIAKLAHKFKS 110 Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197 G V+L A DTFR+AAI+QL WA+ V ++ G D AA+ Y+ A+AK +D+ Sbjct: 111 EGKSVILGAADTFRAAAIEQLTKWAEILDVPIVKTKQGHDPAAVTYDTIASAKAKGIDIA 170 Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257 IIDTAGRLHN L + K++ V K+ +APH ++ ++D T G +A+ Q ++F + G Sbjct: 171 IIDTAGRLHNKVNLQNELKKIVNVAKKAYENAPHKIVLIIDGTQGSSAINQAKVFKEIVG 230 Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF-SAVITGCLD 315 G+I+TK+DGTA+GG + I ++P+ F+GVGE DL F +F ++ G D Sbjct: 231 VDGVIITKLDGTAKGGSIFTIGHELQLPILFVGVGEKPEDLVKFDKNEFIEGILEGLYD 289 >gi|22298471|ref|NP_681718.1| cell division protein [Thermosynechococcus elongatus BP-1] gi|22294651|dbj|BAC08480.1| cell division protein [Thermosynechococcus elongatus BP-1] Length = 458 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 111/311 (35%), Positives = 184/311 (59%), Gaps = 11/311 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++V E ++W+++L +G T L + I+ L E +E LL+++D+GV Sbjct: 138 EEVDLEEITWLQRLRQGLGKTRRGLVHQLRAIVGQGPLSRDAVEAIEMLLLQADVGVKAT 197 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--P-----HVILV 116 ++I+ L TK + + + + + E++ +L +PF + P ++ L+ Sbjct: 198 EQIIAALQTKIRQETLPADQAIAYLKEILRDIL---DRPFQQGYRRNCAPKKGTLNIWLI 254 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IG 175 GVNGVGKTT IGKL+ + +G + ++AA DTFR+AA +Q+KIW R++ + + + Sbjct: 255 AGVNGVGKTTTIGKLAHIATQSGYRCLIAAADTFRAAATEQVKIWGQRSNVEVIANPGKN 314 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 +D AA+ ++A AQA+ ++L++DTAGRL N + LM + K+ R++ + A L Sbjct: 315 TDPAAVVFDAIGAAQARGTELLLVDTAGRLQNKANLMEELKKIRRIIDKRAGDAQIESLL 374 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 VLDAT GQN LRQ ++F A TG+I+TK+DGTA+GG + +V +P+ F+G GEGI Sbjct: 375 VLDATLGQNGLRQAQVFAEAAQLTGVILTKLDGTAKGGVALAVVQELGLPIRFIGAGEGI 434 Query: 296 NDLEPFVAKDF 306 DL PF + +F Sbjct: 435 KDLRPFSSFEF 445 >gi|229815431|ref|ZP_04445763.1| hypothetical protein COLINT_02479 [Collinsella intestinalis DSM 13280] gi|229808964|gb|EEP44734.1| hypothetical protein COLINT_02479 [Collinsella intestinalis DSM 13280] Length = 304 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 101/281 (35%), Positives = 163/281 (58%), Gaps = 15/281 (5%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100 +D+G E+LED L+ D+G +A ++ ++L ++ + ++ L +L + L Sbjct: 28 VDEGFWEDLEDTLVMGDMGGEIAMRVTDDL------RETAARKNLKTADQLRGALAERLC 81 Query: 101 KPFNWD----FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 + F F P +L VG+NG GKTT +GK++ + AG V++ + DTFR+AAI+ Sbjct: 82 EFFVESESDIFDDTPSCVLFVGINGAGKTTTVGKIASAEAGAGKNVVIGSADTFRAAAIE 141 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL +W +R + + GSD A++ Y+ QA D+++IDTAGRLH++ LM + Sbjct: 142 QLDVWGERAGVPVIKRDRGSDPASVCYDVLDQADKLASDLVLIDTAGRLHSSPELMRELA 201 Query: 217 KMIRVL-KRLDPHA----PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 K+++V KR + A P V+ V+D+ TGQN L Q + F+ G G+IMTK+DGTA+ Sbjct: 202 KVVKVTRKRAESCAAGPMPVHVVLVIDSATGQNGLAQAQEFNEALGLDGIIMTKLDGTAK 261 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 GG + + K+P+Y +GVGE + DL+ F A F + G Sbjct: 262 GGIALAVAEQLKLPIYRIGVGEQVEDLQRFDASSFCRALVG 302 >gi|315656360|ref|ZP_07909249.1| cell division protein FtsY [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492919|gb|EFU82521.1| cell division protein FtsY [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 596 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 117/305 (38%), Positives = 181/305 (59%), Gaps = 14/305 (4%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S +R+L + A K I +++S+ L++ E +ED L+ +D+GV +++ +L Sbjct: 291 SRLRRLKERLAGKG-KFGRAILNVLSNADLEESDWEAIEDELLAADLGVEPTVELIGKLK 349 Query: 72 TKRYA---KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 K+ KD + +R+L D+ + + + L P D + IL+VGVNG G Sbjct: 350 VKQKVAGEKDATQVRRMAKRMLTDMLDRKAERRLNLEVP--EDSPTQTAGILLVGVNGGG 407 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALA 182 KTT +GKL++ + V+L A DTFR+AA +QL+ W DR V +E +D A++A Sbjct: 408 KTTTVGKLARLLVAERKTVVLGAADTFRAAAGEQLQTWGDRVGVPVVRAEKDQADPASVA 467 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A K A+ DV++IDTAGRL N LM +GK+ RV ++ P VL V+DATTG Sbjct: 468 FDAAKAAREAGSDVVVIDTAGRLQNKVGLMDELGKIKRVAEKQVPIT--EVLLVIDATTG 525 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL Q ++F G TG+++TK+DG+A+GG ++P+ IPV +G+GEG +DL PFV Sbjct: 526 QNALSQAKIFTEAVGVTGIVLTKLDGSAKGGVIVPLQRELGIPVKLVGLGEGPDDLAPFV 585 Query: 303 AKDFS 307 DF+ Sbjct: 586 PGDFA 590 >gi|297623514|ref|YP_003704948.1| signal recognition particle-docking protein FtsY [Truepera radiovictrix DSM 17093] gi|297164694|gb|ADI14405.1| signal recognition particle-docking protein FtsY [Truepera radiovictrix DSM 17093] Length = 314 Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 127/320 (39%), Positives = 181/320 (56%), Gaps = 22/320 (6%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 +SW +L +G T L + D+ S + ++LE LI +D G +A ++V E Sbjct: 1 MSWFDRLKRGLGKTRDVLTTDVRDLGSVWEMP---WDDLEFALIGADTGSKIAAEVVAEA 57 Query: 71 LTKRYAKDVS----VQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVI-------LVVG 118 +R + VS +++ L D E +M L + F D + H + +VVG Sbjct: 58 KRER-ERGVSFREALEKALLDQLE-PDRMRQKLRRVGFTLDVTR--HTVEVRGSVVMVVG 113 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNGVGKTT I KL + ++ G +VM AAGDTFR+AA QL++W +R V GSD Sbjct: 114 VNGVGKTTTIAKLGQYYTERGRRVMFAAGDTFRAAATAQLEVWGERLGIPTVTGPDGSDP 173 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 A+A+ A +Q +A+ D+L +DTAGRLH LM + K+ RV+ + DP P V VLD Sbjct: 174 GAVAFNAAQQRRARGYDLLFVDTAGRLHTKHNLMEELKKVKRVIAKADPDEPKEVWLVLD 233 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A TGQN L Q + FH G TG+I+TK+DGTA+GG L+PIV +P+ F+GVGE DL Sbjct: 234 AVTGQNGLAQAKKFHEAVGLTGVIVTKLDGTAKGGILLPIVRELGLPIKFIGVGEKAEDL 293 Query: 299 EPFVAKDFSAVITGCLDYGE 318 +P+ D +A + LD E Sbjct: 294 QPY---DAAAYVRALLDMPE 310 >gi|304390863|ref|ZP_07372815.1| cell division protein FtsY [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325746|gb|EFL92992.1| cell division protein FtsY [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 596 Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 117/305 (38%), Positives = 181/305 (59%), Gaps = 14/305 (4%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S +R+L + A K I +++S+ L++ E +ED L+ +D+GV +++ +L Sbjct: 291 SRLRRLKERLAGKG-KFGRAILNVLSNADLEESDWEAIEDELLAADLGVEPTVELIGKLK 349 Query: 72 TKRYA---KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 K+ KD + +R+L D+ + + + L P D + IL+VGVNG G Sbjct: 350 VKQKVAGEKDATQVRRMAKRMLTDMLDRKAERRLNLEVP--EDSPTQTAGILLVGVNGGG 407 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALA 182 KTT +GKL++ + V+L A DTFR+AA +QL+ W DR V +E +D A++A Sbjct: 408 KTTTVGKLARLLVAERKTVVLGAADTFRAAAGEQLQTWGDRVGVPVVRAEKDQADPASVA 467 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A K A+ DV++IDTAGRL N LM +GK+ RV ++ P VL V+DATTG Sbjct: 468 FDAAKAAREAGSDVVVIDTAGRLQNKVGLMDELGKIKRVAEKQVPIT--EVLLVIDATTG 525 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL Q ++F G TG+++TK+DG+A+GG ++P+ IPV +G+GEG +DL PFV Sbjct: 526 QNALSQAKIFTEAVGVTGIVLTKLDGSAKGGVIVPLQRELGIPVKLVGLGEGPDDLAPFV 585 Query: 303 AKDFS 307 DF+ Sbjct: 586 PGDFA 590 >gi|308806441|ref|XP_003080532.1| chloroplast SRP receptor cpFtsY precursor (ISS) [Ostreococcus tauri] gi|116058992|emb|CAL54699.1| chloroplast SRP receptor cpFtsY precursor (ISS) [Ostreococcus tauri] Length = 354 Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 98/200 (49%), Positives = 134/200 (67%), Gaps = 7/200 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VI+VVGVNG GKTT +GKLS + +++G KVM+ GDTFR+AA +QL WA+RT A Sbjct: 149 PSVIMVVGVNGGGKTTTLGKLSHRFAESGAKVMMVPGDTFRAAAAEQLATWAERTGAVMS 208 Query: 171 CSEIGSDAAALAYEAFKQAQAK-KVDVLIIDTAGRLHNNSILM---AGIGKMIRVLKRLD 226 S + A+ ++A +A A+ +D+++ DT+GRLHNN+ LM G+ K I KR++ Sbjct: 209 DSPPNTKPGAVCFKAVDEACARGDIDIVLADTSGRLHNNTQLMDELVGVRKSIS--KRME 266 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 APH VL VLD TTG N L Q +F G TG+I+TK+DGTARGG ++ +V IPV Sbjct: 267 -GAPHEVLLVLDGTTGLNMLNQARVFGEAVGVTGIILTKLDGTARGGAVVSVVDELGIPV 325 Query: 287 YFLGVGEGINDLEPFVAKDF 306 F+GVGE + DL+ F A+ F Sbjct: 326 KFIGVGEAMEDLQSFEAESF 345 >gi|322434661|ref|YP_004216873.1| signal recognition particle-docking protein FtsY [Acidobacterium sp. MP5ACTX9] gi|321162388|gb|ADW68093.1| signal recognition particle-docking protein FtsY [Acidobacterium sp. MP5ACTX9] Length = 338 Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 121/319 (37%), Positives = 174/319 (54%), Gaps = 9/319 (2%) Query: 3 NQKVASESLSWIRK-LTKGFASTSLKLKEGITDIIS-----SRRLDDGVREELEDLLIRS 56 Q ASE + R+ L + +E +D I +R +D+ +LE +L+ + Sbjct: 23 TQTPASEEIDPPRRGLFDRMRQAVTRTRESFSDSIGQVLALTREVDESTLIDLEPILLAA 82 Query: 57 DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116 DIG A ++E L + K + L ++ + K ++ P VI++ Sbjct: 83 DIGSATTAIVLENLRQRALRKGIEGGSELKELLRVELKSILDGVSQQTIPAVAAPEVIMM 142 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNG GKTT GKL+ V+L A DTFR+AAI+QL++WA R+ + ++ G Sbjct: 143 VGVNGTGKTTTTGKLAAYFRRQNRTVLLCAADTFRAAAIEQLEVWATRSDVPIIKTKQGG 202 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D +A Y+A A+A+ VLI+DTAGRLH S LM + KM R +RL P APH V Sbjct: 203 DPSAALYDACTAAKARGTQVLIVDTAGRLHTKSDLMKELDKMRRTAERLVPGAPHQTFLV 262 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 +DATTGQN L+Q +F A TG+++TK+DGTA+GG ++ I K+PV + G GE I+ Sbjct: 263 MDATTGQNGLQQARLFTEAARVTGIVLTKLDGTAKGGIVLAIATELKLPVVYAGTGEKID 322 Query: 297 DLEPFVAKDFSAVITGCLD 315 DL PF D S I LD Sbjct: 323 DLIPF---DSSTFIDSLLD 338 >gi|238852589|ref|ZP_04642999.1| signal recognition particle GTPase [Lactobacillus gasseri 202-4] gi|238834735|gb|EEQ26962.1| signal recognition particle GTPase [Lactobacillus gasseri 202-4] Length = 449 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 97/259 (37%), Positives = 153/259 (59%), Gaps = 5/259 (1%) Query: 54 IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 I SD+G A+++ + L L + D Q ++ + ++ K D Sbjct: 183 IESDVGFETAEELTDSLRDEAKLQNAKSHDDLKQVIVEKLVDIYDKGGEGEDSKLADDPD 242 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +P+V L VGVNG GKTT IGKL+K++ D+G VM+ A DTFR+ A++QL W R + Sbjct: 243 SKPNVYLFVGVNGAGKTTTIGKLAKRIKDSGKSVMMVAADTFRAGAVEQLVEWGRRDGVE 302 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V +D A++ Y+ K+A+ + +D L++DTAGRL N LM+ + K+ R +K++ P Sbjct: 303 VVTGPEKADPASVVYDGVKKAKDRGIDFLLVDTAGRLQNKVNLMSELDKIKRTIKKILPD 362 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P+ VL VLD +TGQNAL Q + F TGL++TK+DG+++GG ++ I +PV Sbjct: 363 QPNEVLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMDLPVKL 422 Query: 289 LGVGEGINDLEPFVAKDFS 307 +G+GE ++DL F A+ F+ Sbjct: 423 VGLGEKVDDLANFDAEKFA 441 >gi|37519820|ref|NP_923197.1| cell division protein FtsY-like protein [Gloeobacter violaceus PCC 7421] gi|35210811|dbj|BAC88192.1| glr0251 [Gloeobacter violaceus PCC 7421] Length = 774 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 115/309 (37%), Positives = 189/309 (61%), Gaps = 9/309 (2%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + V E +SW++KL G T L + + + EELE LL+++D+G+ V+ Sbjct: 458 EDVTVEEISWLQKLRAGLGRTRRSLVNNVKALAGRGPIGPDELEELEGLLLQADVGITVS 517 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVN 120 ++I+ L + + + +V+ + + K L L F+ + +V L+VGVN Sbjct: 518 ERILAALQERVRREALPGDQVMPFLKSQLRKQLE-LEGDDPTGFAPKRGQLNVWLIVGVN 576 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179 GVGKTT IGK++ + +G + ++AAGDTFR+AA++QL IW +R+ V + +D A Sbjct: 577 GVGKTTTIGKIAALATRSGYRTLIAAGDTFRAAAVEQLSIWGERSGVTVVANPSPKADPA 636 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR--LDPHAPHSVLQVL 237 A+ ++A A+A+ V++L++DTAGRL N LM + K+ R++ + +D H S+L VL Sbjct: 637 AVVFDAISAAKARDVELLLVDTAGRLQNKKNLMDELAKVRRIIDKQAIDAHI-ESLL-VL 694 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DATTGQN L+Q ++F AG TG+++TK+DG+A+ G + IV ++P+ F+GVGE I+D Sbjct: 695 DATTGQNGLQQAKVFGETAGLTGVVITKLDGSAKAGIALAIVEQLQLPIRFVGVGEKIDD 754 Query: 298 LEPFVAKDF 306 L PF + +F Sbjct: 755 LRPFNSYEF 763 >gi|221091104|ref|XP_002166798.1| PREDICTED: similar to F21D5.7 [Hydra magnipapillata] Length = 199 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 92/192 (47%), Positives = 130/192 (67%) Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 +VVGVNGVGKTT IGKL+ + + G KV+L A DTFR+AA+DQLK+W +R V + Sbjct: 1 MVVGVNGVGKTTTIGKLAHQFNKRGKKVVLGAADTFRAAAVDQLKLWGERVGVTVVDHGM 60 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 +D +++A++A K+ D++IIDTAGRLH LM +GK+ RV+++ P APH V+ Sbjct: 61 NTDPSSVAFDAVKKGMELSADIIIIDTAGRLHTKVNLMNELGKIKRVVQKFLPEAPHEVM 120 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VLD +TGQNA+ Q F V + L +TK+DGTA+GG +I I KIPV ++GVGE Sbjct: 121 LVLDGSTGQNAVIQAREFTKVTEISSLAITKLDGTAKGGVVIGISDEFKIPVKYIGVGEK 180 Query: 295 INDLEPFVAKDF 306 ++DL+ F +F Sbjct: 181 MDDLQVFNKMEF 192 >gi|332295826|ref|YP_004437749.1| signal recognition particle-docking protein FtsY [Thermodesulfobium narugense DSM 14796] gi|332178929|gb|AEE14618.1| signal recognition particle-docking protein FtsY [Thermodesulfobium narugense DSM 14796] Length = 291 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 112/284 (39%), Positives = 167/284 (58%), Gaps = 18/284 (6%) Query: 27 KLKEGITDIISSRRLDDGV--------REELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78 K+KE +T +RR+ V E LE L+ D+G +AQ+IV++ KR+ Sbjct: 6 KVKEALT---KTRRVFSSVVGMESIDWDEILEKFLL-VDVGADIAQEIVKDA-KKRWLNA 60 Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK-KMSD 137 ++ L + E +P KP + + P V L++GVNG GKTT KL+K + + Sbjct: 61 APIEIALKEAIE----DFLPEGKPQLFFTNSHPCVWLLIGVNGSGKTTTCAKLAKYSIEE 116 Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197 +L A DTFR+AAIDQLKIW +R + D + + SD AA+ ++ K ++++K + + Sbjct: 117 FKATPILIAADTFRAAAIDQLKIWGERLNIDVISQKENSDPAAVVFDGLKASKSRKRNPI 176 Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257 IIDTAGRLH LM + K+ RV+ + P VL VLDA+TG NA++Q E+F Sbjct: 177 IIDTAGRLHTKDNLMEELKKIERVIGKEIEGEPSEVLLVLDASTGYNAVKQAEVFSQSLK 236 Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 TG+I+TK+D +A+GG ++ I IPV F+GVGEG++DL PF Sbjct: 237 VTGIILTKLDSSAKGGYVLNITKKFNIPVKFIGVGEGVDDLVPF 280 >gi|15834827|ref|NP_296586.1| signal recognition particle protein FtsY [Chlamydia muridarum Nigg] gi|270284993|ref|ZP_06194387.1| signal recognition particle protein FtsY [Chlamydia muridarum Nigg] gi|270289016|ref|ZP_06195318.1| signal recognition particle protein FtsY [Chlamydia muridarum Weiss] gi|301336390|ref|ZP_07224592.1| signal recognition particle protein FtsY [Chlamydia muridarum MopnTet14] gi|7190244|gb|AAF39079.1| signal recognition particle protein FtsY [Chlamydia muridarum Nigg] Length = 284 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 98/269 (36%), Positives = 146/269 (54%), Gaps = 7/269 (2%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLM 97 + L + E E LL D G + + EL ++ + ++ ++ +S++I K+ Sbjct: 15 KTLPSDLLEYAEALLYEGDFGPKLTEAFCNELRRHKHPDERLIKELIRSFLSDIIAKL-- 72 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P S PHV L++G NG GKTT + KL+ V++ A DTFRSA ++Q Sbjct: 73 ----PQKKSSSAHPHVTLILGTNGSGKTTTVAKLAHYCLSQNQTVLIVATDTFRSAGMEQ 128 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 ++ WAD F+ + G DAAA+A++ A A+ D +IIDT+GRLH ++ L+ + K Sbjct: 129 MRCWADSLGCGFISGKPGGDAAAIAFDGISAAVARNYDQVIIDTSGRLHTHTNLLKELQK 188 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + V + P APH L +DAT G N L QV++FH GLI TK++G+A+GG L Sbjct: 189 IATVCNKAFPGAPHETLMTVDATLGSNTLSQVKLFHEAVPIDGLIFTKIEGSAKGGSLFR 248 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 I KIP F+G GE + D EPF F Sbjct: 249 IADELKIPTRFVGYGETVYDFEPFSIDRF 277 >gi|256827011|ref|YP_003150970.1| signal recognition particle-docking protein FtsY [Cryptobacterium curtum DSM 15641] gi|256583154|gb|ACU94288.1| signal recognition particle-docking protein FtsY [Cryptobacterium curtum DSM 15641] Length = 384 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 106/279 (37%), Positives = 165/279 (59%), Gaps = 15/279 (5%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100 +D+ E LE+ LI +D+G A IVE L + + + L D ++ + ++ Sbjct: 30 VDEEFWEGLEEALILADVGAPAALDIVEALRVE------ATRHALPDAYAVMDALADQIA 83 Query: 101 KPFNWD----FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 F + F P ++L VG+NG GKTT +GK++ G V+L + DTFR+AAI+ Sbjct: 84 SSFTTEGQGLFEENPVLVLFVGINGAGKTTTVGKIAAHSKAHGRSVLLGSADTFRAAAIE 143 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL+ WA R+ + V E GSD A++ Y+ ++A+A D+++IDTAGRLH + LM + Sbjct: 144 QLEEWARRSQVEIVERERGSDPASVCYDTIERAEALGSDLVLIDTAGRLHTSDDLMRELQ 203 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 K++ V++R +VL V+DATTGQN L Q F GLI+TK+DGTA+GG I Sbjct: 204 KVVSVVRRRAAMPVRTVL-VIDATTGQNGLSQARAFDKALDLDGLIVTKLDGTAKGG--I 260 Query: 277 PIVVTHK--IPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 + ++H+ +P+ +GVGE ++DL+ F A DF+A + G Sbjct: 261 ALAISHELSLPIVKVGVGEQLDDLQEFDAHDFAAALIGA 299 >gi|224438196|ref|ZP_03659131.1| signal recognition particle-docking GTPase FtsY [Helicobacter cinaedi CCUG 18818] gi|313144641|ref|ZP_07806834.1| signal recognition particle-docking GTPase FtsY [Helicobacter cinaedi CCUG 18818] gi|313129672|gb|EFR47289.1| signal recognition particle-docking GTPase FtsY [Helicobacter cinaedi CCUG 18818] Length = 290 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 110/297 (37%), Positives = 168/297 (56%), Gaps = 21/297 (7%) Query: 20 GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79 + T K + I ++ S++ D ++ELE++LI DI + + I++ L Sbjct: 4 SLSKTLQKTTQNIASLLGSKK-DKLSKDELEEILIECDIAYELVESILDSLPP------- 55 Query: 80 SVQRVLYDVSELIHKMLMPL----SKPF--NWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 Y + +HK L+ L S P N D S +P V L+VGVNG GKTT I KL+ Sbjct: 56 ------YVSKDALHKALIALLEIESSPLLENAD-SIKPLVTLIVGVNGAGKTTSIAKLAN 108 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 G KVMLAAGDTFR+AAI+Q+K+W +R S + ++ D +A+A+++ A A+ Sbjct: 109 LAQKEGKKVMLAAGDTFRAAAIEQIKLWGERLSIPVIATQHMHDPSAVAFDSINSALARN 168 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +D L IDTAGRLHN + L + K++RV ++ P VLD T G +A+ Q + F Sbjct: 169 IDELYIDTAGRLHNQTNLNNELLKIVRVCQKALRDLPLRKFLVLDGTQGSSAINQAKAFS 228 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 G+I+TK+DGT++GG + IV KIP+ F+GVGE +DL F +++ ++ Sbjct: 229 QNITFDGIIITKLDGTSKGGAIFSIVSELKIPICFIGVGEKADDLLKFDKQEYVKIL 285 >gi|57168091|ref|ZP_00367230.1| signal recognition particle-docking protein FtsY [Campylobacter coli RM2228] gi|305431759|ref|ZP_07400926.1| cell division protein FtsY [Campylobacter coli JV20] gi|57020465|gb|EAL57134.1| signal recognition particle-docking protein FtsY [Campylobacter coli RM2228] gi|304444843|gb|EFM37489.1| cell division protein FtsY [Campylobacter coli JV20] Length = 288 Score = 182 bits (461), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 97/268 (36%), Positives = 156/268 (58%), Gaps = 11/268 (4%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 LE++L+ +D+ + ++I+ L K ++RV+ + +K F Sbjct: 31 LEEILLEADVAYEIVEEIIYYLPPSDEVKKEDLKRVM-------GSYFLYENKEF---LD 80 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +P V L++GVNG GKTT I KL+ G KV+L A DTFR+ AI+QL++W+++ D Sbjct: 81 EKPFVELILGVNGAGKTTSIAKLANLYKSQGQKVILGACDTFRAGAIEQLRLWSEKVGVD 140 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V ++ G D +A+A++ +A+AK D +IIDTAGRL N L + K++R+ + PH Sbjct: 141 IVLTQQGHDPSAVAFDTISKARAKGFDKVIIDTAGRLQNQKNLANELEKIVRISAKAMPH 200 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 APH + VLD T G + Q + F+ + G+I+TK+DGTA+GG L I ++P+ + Sbjct: 201 APHRKILVLDGTQGNAGILQAKAFNELVQLDGVIITKLDGTAKGGALFSIARELELPILY 260 Query: 289 LGVGEGINDLEPFVAKDF-SAVITGCLD 315 +GVGE + DL F A++F ++ G D Sbjct: 261 IGVGEKMQDLIEFNAQNFLDTLLEGVFD 288 >gi|315453635|ref|YP_004073905.1| putative signal recognition particle receptor protein [Helicobacter felis ATCC 49179] gi|315132687|emb|CBY83315.1| putative signal recognition particle receptor protein [Helicobacter felis ATCC 49179] Length = 295 Score = 182 bits (461), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 105/283 (37%), Positives = 165/283 (58%), Gaps = 12/283 (4%) Query: 28 LKEGITDIISSRRLDDGV--REELEDLLIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQR 83 K+ I ++ S + D +EE+E++LI D+ + +K++E L KR +V++ R Sbjct: 6 FKKTIQNVASLLKTKDATFSKEEMEEILIGFDVQFDLVEKLLEHLPEQIKRNHLEVALMR 65 Query: 84 VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143 L S P+ +P V L++GVNG GKTT I KL+KK KV+ Sbjct: 66 FLRKESYYDQVRFKPVDT--------KPLVSLILGVNGAGKTTTIAKLAKKHLLNKQKVL 117 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 L AGDTFR+AA+ QL++W ++ + + + SD +ALAY + A+ VD +IIDTAG Sbjct: 118 LGAGDTFRAAAVKQLQLWGEKLQLEVISAGQNSDPSALAYNTIEAGIARGVDQIIIDTAG 177 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 RLHN + L + K+ RV + +AP+ + +LD T G +AL Q ++FH G+I+ Sbjct: 178 RLHNQTNLKNELLKISRVCSKALNNAPYYKILILDGTQGSSALEQAKIFHESLELDGVIV 237 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TK+DGT++GG ++ I+ ++P+ +LGVGE NDL PF ++ Sbjct: 238 TKLDGTSKGGCILSILYELQLPILYLGVGEKENDLIPFEEMEY 280 >gi|116629439|ref|YP_814611.1| Signal recognition particle GTPase [Lactobacillus gasseri ATCC 33323] gi|311110913|ref|ZP_07712310.1| signal recognition particle-docking protein FtsY [Lactobacillus gasseri MV-22] gi|116095021|gb|ABJ60173.1| signal recognition particle-docking protein FtsY [Lactobacillus gasseri ATCC 33323] gi|311066067|gb|EFQ46407.1| signal recognition particle-docking protein FtsY [Lactobacillus gasseri MV-22] Length = 449 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 97/259 (37%), Positives = 153/259 (59%), Gaps = 5/259 (1%) Query: 54 IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 I SD+G A+++ + L L + D Q ++ + ++ K D Sbjct: 183 IESDVGFETAEELTDSLRDEAKLQNAKSHDDLKQVIVEKLVDIYDKGGEGEDSKLADDPD 242 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +P+V L VGVNG GKTT IGKL+K++ D+G VM+ A DTFR+ A++QL W R + Sbjct: 243 AKPNVYLFVGVNGAGKTTTIGKLAKRIKDSGKSVMMVAADTFRAGAVEQLVEWGRRDGVE 302 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V +D A++ Y+ K+A+ + +D L++DTAGRL N LM+ + K+ R +K++ P Sbjct: 303 VVTGPEKADPASVVYDGVKKAKDRGIDFLLVDTAGRLQNKVNLMSELDKIKRTIKKILPD 362 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P+ VL VLD +TGQNAL Q + F TGL++TK+DG+++GG ++ I +PV Sbjct: 363 QPNEVLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMDLPVKL 422 Query: 289 LGVGEGINDLEPFVAKDFS 307 +G+GE ++DL F A+ F+ Sbjct: 423 VGLGEKVDDLANFDAEKFA 441 >gi|71894168|ref|YP_278276.1| cell division protein FtsY [Mycoplasma synoviae 53] gi|71850956|gb|AAZ43565.1| cell division protein FtsY [Mycoplasma synoviae 53] Length = 350 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 104/284 (36%), Positives = 170/284 (59%), Gaps = 14/284 (4%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV--LYDVSELIHKMLM 97 LD+ E LE++LI SDI V++ I+E++ K++ + ++ + + E+I + Sbjct: 67 ELDEEYFENLEEILIMSDINVSLVDVIIEQI-----KKEIRINKITDIKLIGEIIADKIF 121 Query: 98 PLSK-----PFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 + + D+ +++ +V +VGVNG GKTT I KL+ K+++AA DTFR Sbjct: 122 EIYTNNSIIDTSLDYKNNQTNVFFIVGVNGSGKTTSIAKLANYYKSLDKKILIAAADTFR 181 Query: 152 SAAIDQLKIWADRTSADFVC-SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 + A++QL+IW+++ D V + +D +++ YEA K+A+ + D+LIIDTAGRL N Sbjct: 182 AGAVEQLRIWSEKIGCDIVMPKKANADPSSVIYEAAKKAKDEAYDLLIIDTAGRLQNKVN 241 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + KM VLKR P AP+ L VLDAT GQ+ + Q ++F V +G+I+TKMDGT+ Sbjct: 242 LMNELKKMYEVLKRFLPEAPNESLLVLDATNGQSGIMQAKVFKEVVNLSGIILTKMDGTS 301 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 +GG ++ I + V +G+GE ++DL+ F + F +T L Sbjct: 302 KGGIVLSIKDELDLNVKLVGLGEKLDDLQEFDLELFIYQMTKSL 345 >gi|117928774|ref|YP_873325.1| signal recognition particle-docking protein FtsY [Acidothermus cellulolyticus 11B] gi|117649237|gb|ABK53339.1| signal recognition particle-docking protein FtsY [Acidothermus cellulolyticus 11B] Length = 413 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 124/304 (40%), Positives = 180/304 (59%), Gaps = 11/304 (3%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L A + L G+ ++S RLDD +E+EDLL+ +D+GVA ++VE L T+ Sbjct: 108 RLRSRLARSESVLGRGLFALLSRERLDDATWQEIEDLLLTADVGVAATTELVERLRTE-- 165 Query: 76 AKDVSVQRVLYDVSELIHKMLMP-----LSKPF-NWDFSHRPHVILVVGVNGVGKTTVIG 129 AK + V R DV ++ + L+ L + + P V+LVVGVNG GKTT +G Sbjct: 166 AKVMGV-RSPDDVRAMLRRSLLDTVDAGLDRSLATTRTAAGPAVVLVVGVNGTGKTTTVG 224 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL++ + G V+L A DTFR+AA DQL+ W R V +D A++A++A + A Sbjct: 225 KLARLLVADGRSVVLGAADTFRAAAADQLETWGRRVGVPVVRGAERADPASVAFDAVRVA 284 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 ++ DV++IDTAGRLH + LM +GK+ RV++R P + VL VLDATTGQN L Q Sbjct: 285 IEQEADVVVIDTAGRLHTKTGLMDELGKVKRVVERRCPVS--EVLLVLDATTGQNGLTQA 342 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 +F V TG+++TK+DGTA+GG +I + IPV +G+GEG +DL PF F Sbjct: 343 RVFTDVVAVTGVVLTKLDGTAKGGIVISVQRELGIPVKLVGLGEGPDDLAPFDPAAFVDA 402 Query: 310 ITGC 313 + G Sbjct: 403 LLGV 406 >gi|153931250|ref|YP_001384626.1| signal recognition particle-docking protein FtsY [Clostridium botulinum A str. ATCC 19397] gi|153937568|ref|YP_001388143.1| signal recognition particle-docking protein FtsY [Clostridium botulinum A str. Hall] gi|152927294|gb|ABS32794.1| signal recognition particle-docking protein FtsY [Clostridium botulinum A str. ATCC 19397] gi|152933482|gb|ABS38981.1| signal recognition particle-docking protein FtsY [Clostridium botulinum A str. Hall] Length = 303 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 126/300 (42%), Positives = 186/300 (62%), Gaps = 12/300 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSR-----RLDDGVREELEDLLIRSDIGVAVAQKIV 67 + KL +G T K+G TD ISS +D+ + EELE++L+ +DIGV + KI+ Sbjct: 5 FFDKLKEGLTKT----KDGFTDKISSVLNLAVTIDEDLYEELEEILVTADIGVDTSIKII 60 Query: 68 EELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 + L + + K + + +I ++L D + P V+L++GVNGVGKTT Sbjct: 61 DRLRERVKEEKIKDPAEIKPCLKRVILQILGEEKGSITPDTT--PKVMLIIGVNGVGKTT 118 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGK+S K+ + G KV++AA DTFR+AAIDQL++W+ R D + + GSD A+ ++A Sbjct: 119 SIGKVSAKLKNQGYKVIMAAADTFRAAAIDQLEVWSSRAKVDIIKHQEGSDPGAVVFDAV 178 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+++K DVLI DTAGRLHN LM + K+ ++L+R A L VLDATTGQNA+ Sbjct: 179 QAAKSRKADVLICDTAGRLHNKKNLMNELSKINKILEREYGDASKETLLVLDATTGQNAV 238 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q + F + G+I+TK+DGTA+GG +I I IPV +GVGEGI DL+ F +++F Sbjct: 239 IQAKEFMSACPIDGIILTKLDGTAKGGVVISIKDQLDIPVKLIGVGEGIEDLQEFNSEEF 298 >gi|296273625|ref|YP_003656256.1| signal recognition particle-docking protein FtsY [Arcobacter nitrofigilis DSM 7299] gi|296097799|gb|ADG93749.1| signal recognition particle-docking protein FtsY [Arcobacter nitrofigilis DSM 7299] Length = 310 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 97/265 (36%), Positives = 154/265 (58%), Gaps = 20/265 (7%) Query: 47 EELEDLLIRSDIGVAVAQKIVE---ELLTKRYAKDVSVQRVLYDVSELIHK--MLMPLSK 101 E++E+LLI +D+ ++ +K ++ E++ ++ +L H+ ML + Sbjct: 49 EDIEELLIEADMDYSIIEKAMDGLPEMINRK---------------QLRHRLVMLFEHAP 93 Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 N + P V L++GVNG GKTT I KL+ V+L AGDTFR+AAI+QL IW Sbjct: 94 DVNMENLPSPFVQLIIGVNGAGKTTTIAKLANLYKKDNKSVILGAGDTFRAAAIEQLSIW 153 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 AD+ + ++ G D +A+AY+ A A+ +D +IIDTAGRL + L + K+++V Sbjct: 154 ADKLEVPIIKTKQGHDPSAVAYDTISSAVARNIDNVIIDTAGRLQTQTNLSNELKKIVKV 213 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 + APH L +LD T G A+ Q + F+ + G G+I+TK+DGTA+GG L I Sbjct: 214 CSKAKEGAPHQKLMILDGTQGNTAIEQAKAFNEMVGVDGIIVTKLDGTAKGGALFSISNR 273 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDF 306 ++P++++GVGE +NDL F +F Sbjct: 274 LELPIFYIGVGETMNDLVEFSPDNF 298 >gi|148380409|ref|YP_001254950.1| signal recognition particle-docking protein FtsY [Clostridium botulinum A str. ATCC 3502] gi|168180668|ref|ZP_02615332.1| signal recognition particle-docking protein FtsY [Clostridium botulinum NCTC 2916] gi|226949804|ref|YP_002804895.1| signal recognition particle-docking protein FtsY [Clostridium botulinum A2 str. Kyoto] gi|148289893|emb|CAL84001.1| putative signal recognition particle [Clostridium botulinum A str. ATCC 3502] gi|182668550|gb|EDT80529.1| signal recognition particle-docking protein FtsY [Clostridium botulinum NCTC 2916] gi|226843332|gb|ACO85998.1| signal recognition particle-docking protein FtsY [Clostridium botulinum A2 str. Kyoto] gi|322806716|emb|CBZ04285.1| signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) [Clostridium botulinum H04402 065] Length = 303 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 127/307 (41%), Positives = 188/307 (61%), Gaps = 26/307 (8%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSR-----RLDDGVREELEDLLIRSDIGVAVAQKIV 67 + KL +G T K+G TD ISS +D+ + EELE++L+ +DIGV + KI+ Sbjct: 5 FFDKLKEGLTKT----KDGFTDKISSVLNLAVTIDEDLYEELEEILVTADIGVDTSIKII 60 Query: 68 EEL---LTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 + L + + KD + ++RV+ ++ + P P V+L++GV Sbjct: 61 DRLRERVKEEKIKDPAEIKPCLKRVILEILGEEKGSITP---------DTTPKVMLIIGV 111 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGK+S K+ + G KV++AA DTFR+AAIDQL++W+ R D + + GSD Sbjct: 112 NGVGKTTSIGKVSAKLKNQGYKVIMAAADTFRAAAIDQLEVWSSRAKVDIIKHQEGSDPG 171 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ ++A + A+++K DVLI DTAGRLHN LM + K+ ++L+R A L VLDA Sbjct: 172 AVVFDAVQAAKSRKADVLICDTAGRLHNKKNLMNELSKINKILEREYGDASKETLLVLDA 231 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNA+ Q + F + G+I+TK+DGTA+GG +I I IPV +GVGEGI DL+ Sbjct: 232 TTGQNAVIQAKEFMSACPIDGIILTKLDGTAKGGVVISIKDQLDIPVKLIGVGEGIEDLQ 291 Query: 300 PFVAKDF 306 F +++F Sbjct: 292 EFNSEEF 298 >gi|300361931|ref|ZP_07058108.1| cell division protein FtsY [Lactobacillus gasseri JV-V03] gi|300354550|gb|EFJ70421.1| cell division protein FtsY [Lactobacillus gasseri JV-V03] Length = 446 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 97/259 (37%), Positives = 153/259 (59%), Gaps = 5/259 (1%) Query: 54 IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 I SD+G A+++ + L L + D Q ++ + ++ K D Sbjct: 180 IESDVGFETAEELTDSLRDEAKLQNAKSHDDLKQVIVEKLVDIYDKGGEGKDSKLADDPE 239 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +P+V L VGVNG GKTT IGKL+K++ D+G VM+ A DTFR+ A++QL W R + Sbjct: 240 AKPNVYLFVGVNGAGKTTTIGKLAKRIKDSGKSVMMVAADTFRAGAVEQLVEWGRRDGVE 299 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V +D A++ Y+ K+A+ + +D L++DTAGRL N LM+ + K+ R +K++ P Sbjct: 300 VVTGPEKADPASVVYDGVKKAKDRGIDFLLVDTAGRLQNKVNLMSELDKIKRTIKKILPD 359 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P+ VL VLD +TGQNAL Q + F TGL++TK+DG+++GG ++ I +PV Sbjct: 360 QPNEVLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMDLPVKL 419 Query: 289 LGVGEGINDLEPFVAKDFS 307 +G+GE ++DL F A+ F+ Sbjct: 420 VGLGEKVDDLANFDAEKFA 438 >gi|269836378|ref|YP_003318606.1| signal recognition particle-docking protein FtsY [Sphaerobacter thermophilus DSM 20745] gi|269785641|gb|ACZ37784.1| signal recognition particle-docking protein FtsY [Sphaerobacter thermophilus DSM 20745] Length = 321 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 111/311 (35%), Positives = 167/311 (53%), Gaps = 13/311 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-- 73 K+ G T + + I ++ + + + E+LE LLI++D+GV ++++ L + Sbjct: 16 KIEAGLKKTRRGIFKDIANLFERSEITEDLFEDLEALLIQADLGVETTLELLDNLRDRID 75 Query: 74 --RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PHVILVVGVNGVGKTTVIG 129 R + + L +E+I +L ++ R P VILVVGVNG GKTT I Sbjct: 76 RERIKQPADAREALR--TEMI-ALLENATRNRKIKIYQRGVPFVILVVGVNGTGKTTTIA 132 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K D G VML AGDTFR+AAIDQLK+W +R + + G+D A+ ++ + A Sbjct: 133 KLAKYHQDQGRNVMLVAGDTFRAAAIDQLKVWGERLKVPVIAHDPGADPGAVVFDGMQAA 192 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + D+L++DTAGRLH LM + K+ +V++R AP VL V+DATTGQN L Q Sbjct: 193 YNRNADILLVDTAGRLHTKYNLMEELKKIRKVMQRHVAEAPQEVLLVIDATTGQNGLVQA 252 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F T + + K+DGTARGG I P+ ++G GE + L F + Sbjct: 253 KKFAEAVEITDIAIAKLDGTARGGIAFAIARELGTPISYVGTGEQVTALAEFNPVTY--- 309 Query: 310 ITGCLDYGEEK 320 L +GEE+ Sbjct: 310 -VDALFFGEEE 319 >gi|168184657|ref|ZP_02619321.1| signal recognition particle-docking protein FtsY [Clostridium botulinum Bf] gi|170760312|ref|YP_001787763.1| signal recognition particle-docking protein FtsY [Clostridium botulinum A3 str. Loch Maree] gi|237795887|ref|YP_002863439.1| signal recognition particle-docking protein FtsY [Clostridium botulinum Ba4 str. 657] gi|169407301|gb|ACA55712.1| signal recognition particle-docking protein FtsY [Clostridium botulinum A3 str. Loch Maree] gi|182672312|gb|EDT84273.1| signal recognition particle-docking protein FtsY [Clostridium botulinum Bf] gi|229261814|gb|ACQ52847.1| signal recognition particle-docking protein FtsY [Clostridium botulinum Ba4 str. 657] Length = 303 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 126/300 (42%), Positives = 185/300 (61%), Gaps = 12/300 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSR-----RLDDGVREELEDLLIRSDIGVAVAQKIV 67 + KL +G T K+G TD ISS +D+ + EELE++L+ +DIGV + KI+ Sbjct: 5 FFDKLKEGLTKT----KDGFTDKISSVLNLAVTIDEDLYEELEEILVTADIGVDTSIKII 60 Query: 68 EELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 + L + + K + + +I ++L D + P V+L++GVNGVGKTT Sbjct: 61 DRLRERVKEEKIKDPAEIKPCLKRVILEILGEEKGSITPDIT--PKVMLIIGVNGVGKTT 118 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGK+S K+ + G KV++AA DTFR+AAIDQL++W+ R D + + GSD A+ ++A Sbjct: 119 SIGKVSAKLKNQGYKVIMAAADTFRAAAIDQLEVWSSRAKVDIIKHQEGSDPGAVVFDAV 178 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+++K DVLI DTAGRLHN LM + K+ ++L+R A L VLDATTGQNA+ Sbjct: 179 QAAKSRKADVLICDTAGRLHNKKNLMNELSKINKILEREYGDASKETLLVLDATTGQNAV 238 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q + F + G+I+TK+DGTA+GG +I I IPV +GVGEGI DL+ F ++F Sbjct: 239 IQAKEFMSACPIDGIILTKLDGTAKGGVVISIKDQLDIPVKLIGVGEGIEDLQEFNPEEF 298 >gi|218296515|ref|ZP_03497243.1| signal recognition particle-docking protein FtsY [Thermus aquaticus Y51MC23] gi|218243057|gb|EED09589.1| signal recognition particle-docking protein FtsY [Thermus aquaticus Y51MC23] Length = 304 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 93/185 (50%), Positives = 119/185 (64%) Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT I KL + + G KVM AGDTFR+A QL W R S + G+D AAL Sbjct: 113 VGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAAL 172 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 AY+A + +A+ D+L +DTAGRLH LM + K+ R + + DP P V VLDA T Sbjct: 173 AYDAVQAMKARDYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT 232 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQN L Q + FH G TG+I+TK+DGTA+GG LIPIV T K+P+ F+GVGEG +DL+PF Sbjct: 233 GQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIRFIGVGEGPDDLQPF 292 Query: 302 VAKDF 306 + F Sbjct: 293 DPEAF 297 >gi|194246475|ref|YP_002004114.1| Signal recognition particle-docking protein [Candidatus Phytoplasma mali] gi|193806832|emb|CAP18261.1| Signal recognition particle-docking protein [Candidatus Phytoplasma mali] Length = 324 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 161/283 (56%), Gaps = 19/283 (6%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKM 95 + +++D + + LE L I++DI ++ E+ K + + ++Y ++S +I + Sbjct: 38 NSKINDNLLKSLEILFIQTDISTETVIYLMTEI-----KKQIKEKNIIYSKNLSSIIFET 92 Query: 96 LMPLSKPFNW------------DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143 ++ L + ++ +F +P V L VGVNGVGKTT IGK++++ + KV+ Sbjct: 93 MLKLYQKDDFLIYQNKVNFLSNEFFPKPEVYLFVGVNGVGKTTTIGKIAQQFKNKQKKVL 152 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 L AGDTFRS AI+QLKIW RT + E + + +E + A+ + DV++ DTAG Sbjct: 153 LIAGDTFRSGAIEQLKIWGQRTQSTVFFKEQAKSPSNVIFEGLQLAKKENYDVVLCDTAG 212 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 RL N LM+ + K+ RV+ ++ + P VLDA GQN + QV +F G+I+ Sbjct: 213 RLQNKLNLMSELSKIRRVILKVLNYEPQETFLVLDAMMGQNGIDQVSIFQKNVFINGVIL 272 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TK+DG+++GG + I + I + ++GVGE + DL PF K++ Sbjct: 273 TKLDGSSKGGLIFTIKHLYNIDIKYIGVGENVEDLIPFEIKNY 315 >gi|268679516|ref|YP_003303947.1| signal recognition particle-docking protein FtsY [Sulfurospirillum deleyianum DSM 6946] gi|268617547|gb|ACZ11912.1| signal recognition particle-docking protein FtsY [Sulfurospirillum deleyianum DSM 6946] Length = 294 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 103/260 (39%), Positives = 148/260 (56%), Gaps = 13/260 (5%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL--YDVSELIHKMLMPLSKPFNWD 106 LE++LI SDI + ++I+ L + V+RVL Y + E K D Sbjct: 32 LEEILIESDIPYELVEEIIYYLPPSQTVARADVKRVLQSYFMYENTQK-----------D 80 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P V LV+GVNG GKTT I KL+ +L A DTFR+AAI+QLK WA++ Sbjct: 81 TPTKPFVELVIGVNGAGKTTTIAKLAHIYKKENQSTLLGAADTFRAAAIEQLKSWAEKID 140 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 V + G D +A+AY+ A AKK+D +IIDTAGRLHN L + K++R+ + Sbjct: 141 VGIVYTAQGHDPSAVAYDTISSALAKKIDHVIIDTAGRLHNQVNLSNELKKIVRICDKAL 200 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 APH + +LD T G +A+ Q + FH + G+I+TK+DGTA+GG L I ++P+ Sbjct: 201 LGAPHRKILILDGTQGSSAINQAKAFHEMISIDGIIITKLDGTAKGGSLFGIAKALQLPI 260 Query: 287 YFLGVGEGINDLEPFVAKDF 306 ++GVGEG +DL F D+ Sbjct: 261 LYVGVGEGRDDLIAFNPTDY 280 >gi|150016057|ref|YP_001308311.1| signal recognition particle-docking protein FtsY [Clostridium beijerinckii NCIMB 8052] gi|149902522|gb|ABR33355.1| signal recognition particle-docking protein FtsY [Clostridium beijerinckii NCIMB 8052] Length = 302 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 114/256 (44%), Positives = 159/256 (62%), Gaps = 4/256 (1%) Query: 56 SDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114 SDIG+ I+E L K R K Q V + E+I +L+ + D V+ Sbjct: 49 SDIGMDTTVDIIERLRGKIRKEKINDPQEVKPALKEVIRDILLEGTYE---DDEKEKKVM 105 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 L++GVNGVGKTT IGKL+ K G KV+LAA DTFR+AAIDQL++W+ R D V + Sbjct: 106 LIIGVNGVGKTTSIGKLAAKNKQEGKKVLLAAADTFRAAAIDQLEVWSSRAEVDIVKHQE 165 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 GSD AA+ ++A + ++A+ VD+LI DTAGRLHN LM + K+ R++ R L Sbjct: 166 GSDPAAVVFDAIEASKARNVDLLICDTAGRLHNKKNLMNELEKINRIIDRELQGYRKETL 225 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VLDATTGQNA+ Q + F G+I+TK+DGTA+GG ++ I + IPV ++GVGEG Sbjct: 226 LVLDATTGQNAVIQAKQFMEACPIDGIILTKLDGTAKGGVVLSIKQSLNIPVRYIGVGEG 285 Query: 295 INDLEPFVAKDFSAVI 310 I+DL+ F A+ F+ + Sbjct: 286 IDDLQTFDAEGFAEAL 301 >gi|153941237|ref|YP_001391749.1| signal recognition particle-docking protein FtsY [Clostridium botulinum F str. Langeland] gi|152937133|gb|ABS42631.1| signal recognition particle-docking protein FtsY [Clostridium botulinum F str. Langeland] gi|295319774|gb|ADG00152.1| signal recognition particle-docking protein FtsY [Clostridium botulinum F str. 230613] Length = 303 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 127/307 (41%), Positives = 187/307 (60%), Gaps = 26/307 (8%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSR-----RLDDGVREELEDLLIRSDIGVAVAQKIV 67 + KL +G T K+G TD ISS +D+ + EELE++L+ +DIGV + KI+ Sbjct: 5 FFDKLKEGLTKT----KDGFTDKISSVLNLAVTIDEDLYEELEEILVTADIGVDTSIKII 60 Query: 68 EEL---LTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 + L + + KD + ++RV+ ++ + P P V+L++GV Sbjct: 61 DRLRERVKEEKIKDPAEIKPCLKRVILEILGEEKGSITP---------DTTPKVMLIIGV 111 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGK+S K+ + G KV++AA DTFR+AAIDQL++W+ R D + + GSD Sbjct: 112 NGVGKTTSIGKVSAKLKNQGYKVIMAAADTFRAAAIDQLEVWSSRAKVDIIKHQEGSDPG 171 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ ++A + A+++K DVLI DTAGRLHN LM + K+ ++L+R A L VLDA Sbjct: 172 AVVFDAVQAAKSRKADVLICDTAGRLHNKKNLMNELSKINKILEREYGDASKETLLVLDA 231 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNA+ Q + F + G+I+TK+DGTA+GG +I I IPV +GVGEGI DL+ Sbjct: 232 TTGQNAVIQAKEFMSACPIDGIILTKLDGTAKGGVVISIKDQLDIPVKLIGVGEGIEDLQ 291 Query: 300 PFVAKDF 306 F ++F Sbjct: 292 EFNPEEF 298 >gi|157737135|ref|YP_001489818.1| signal recognition particle-docking GTPase FtsY [Arcobacter butzleri RM4018] gi|315636844|ref|ZP_07892069.1| cell division protein FtsY [Arcobacter butzleri JV22] gi|157698989|gb|ABV67149.1| signal recognition particle-docking GTPase FtsY [Arcobacter butzleri RM4018] gi|315478898|gb|EFU69606.1| cell division protein FtsY [Arcobacter butzleri JV22] Length = 309 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 94/264 (35%), Positives = 157/264 (59%), Gaps = 19/264 (7%) Query: 47 EELEDLLIRSDIGVAVAQKIVE---ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103 +E+E+LLI +D+ + +K + +++T++ +L H+++M Sbjct: 49 DEVEELLIEADMEYEIIEKAMNGLPDMITRK---------------QLRHRLVMLFEHAP 93 Query: 104 NWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 + ++ +P V L++GVNG GKTT I KL+ K+ G V+L AGDTFR+AAI+QL WA Sbjct: 94 EVNLANTKPFVRLIIGVNGAGKTTTIAKLANKLKKEGKSVILGAGDTFRAAAIEQLSTWA 153 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 ++ + ++ G DA+A+A++ A A+ +D +IIDTAGRL + L + K+++V Sbjct: 154 NKLEIPIIKTQQGHDASAVAFDTISAAIARNIDDVIIDTAGRLQTQTNLNNELKKIVKVC 213 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 + APH L +LD T G +A+ Q FH + G G+I+TK+DGTA+GG L I Sbjct: 214 SKAMSDAPHQKLLILDGTQGNSAIAQARAFHEIVGIDGIIVTKLDGTAKGGALFSISNQL 273 Query: 283 KIPVYFLGVGEGINDLEPFVAKDF 306 ++P++++G+GE +DL F +F Sbjct: 274 ELPIFYVGIGEKQDDLVEFSPDNF 297 >gi|170757082|ref|YP_001781994.1| signal recognition particle-docking protein FtsY [Clostridium botulinum B1 str. Okra] gi|169122294|gb|ACA46130.1| signal recognition particle-docking protein FtsY [Clostridium botulinum B1 str. Okra] Length = 303 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 127/307 (41%), Positives = 187/307 (60%), Gaps = 26/307 (8%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSR-----RLDDGVREELEDLLIRSDIGVAVAQKIV 67 + KL +G T K+G TD ISS +D+ + EELE++L+ +DIGV + KI+ Sbjct: 5 FFDKLKEGLTKT----KDGFTDKISSVLNLAVTIDEDLYEELEEILVTADIGVDTSIKII 60 Query: 68 EEL---LTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 + L + + KD + ++RV+ ++ + P P V+L++GV Sbjct: 61 DRLRERVKEEKIKDPAEIKPCLKRVILEILGEEKGSITP---------DTTPKVMLIIGV 111 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGK+S K+ + G KV++AA DTFR+AAIDQL++W+ R D + + GSD Sbjct: 112 NGVGKTTSIGKVSAKLKNQGYKVIMAAADTFRAAAIDQLEVWSSRAKVDIIKHQEGSDPG 171 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ ++A + A+++K DVLI DTAGRLHN LM + K+ ++L+R A L VLDA Sbjct: 172 AVVFDAVQAAKSRKADVLICDTAGRLHNKKNLMNELSKINKILEREYGDASKETLLVLDA 231 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNA+ Q + F + G+I+TK+DGTA+GG +I I IPV +GVGEGI DL+ Sbjct: 232 TTGQNAVIQAKEFMSACPIDGIILTKLDGTAKGGVVISIKDQLDIPVKLIGVGEGIEDLQ 291 Query: 300 PFVAKDF 306 F ++F Sbjct: 292 DFNPEEF 298 >gi|298345306|ref|YP_003717993.1| FtsY signal recognition particle [Mobiluncus curtisii ATCC 43063] gi|298235367|gb|ADI66499.1| FtsY signal recognition particle [Mobiluncus curtisii ATCC 43063] Length = 596 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 113/290 (38%), Positives = 174/290 (60%), Gaps = 13/290 (4%) Query: 27 KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA---KDVS--- 80 K I +++S+ L++ E +ED L+ +D+GV +++ +L K+ KD + Sbjct: 305 KFGRAILNVLSNADLEESDWEAIEDELLAADLGVEPTVELIGKLKVKQKVAGEKDATQVR 364 Query: 81 --VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138 +R+L D+ + + + L P D + IL+VGVNG GKTT +GKL++ + Sbjct: 365 RMAKRMLTDMLDRKAERRLNLEVP--EDSPTQTAGILLVGVNGGGKTTTVGKLARLLVAE 422 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALAYEAFKQAQAKKVDVL 197 V+L A DTFR+AA +QL+ W DR V +E +D A++A++A K A+ DV+ Sbjct: 423 RKTVVLGAADTFRAAAGEQLQTWGDRVGVPVVRAEKDQADPASVAFDAAKAAREAGSDVV 482 Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257 +IDTAGRL N LM +GK+ RV ++ P VL V+DATTGQNAL Q ++F G Sbjct: 483 VIDTAGRLQNKVGLMDELGKIKRVAEKQVPIT--EVLLVIDATTGQNALSQAKIFTEAVG 540 Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 TG+++TK+DG+A+GG ++P+ IPV +G+GEG +DL PFV DF+ Sbjct: 541 VTGIVLTKLDGSAKGGVIVPLQRELGIPVKLVGLGEGPDDLAPFVPGDFA 590 >gi|159900675|ref|YP_001546922.1| signal recognition particle-docking protein FtsY [Herpetosiphon aurantiacus ATCC 23779] gi|159893714|gb|ABX06794.1| signal recognition particle-docking protein FtsY [Herpetosiphon aurantiacus ATCC 23779] Length = 321 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 119/256 (46%), Positives = 156/256 (60%), Gaps = 6/256 (2%) Query: 54 IRSDIGVAVAQKIVE---ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110 I D+G A KIVE E K+ K S R L SEL++++ + P + S + Sbjct: 61 IAGDVGAENALKIVERVREKCEKKGFKFASEARSLLK-SELVNRL--DVDTPQYSERSTK 117 Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P+VILVVGVNGVGKTT+I KL+ + G V+LAA DTFR+AAIDQL+ WADR + Sbjct: 118 PYVILVVGVNGVGKTTLIAKLANRYKAMGKNVILAAADTFRAAAIDQLQHWADRVGVPMI 177 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + GSD A+AY+A + ++ DVLIIDTAGRL + LM + K+ V+K+ +AP Sbjct: 178 SQQPGSDPGAVAYDATQATYNQQADVLIIDTAGRLQSKHNLMKELEKISNVVKKRWQYAP 237 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 H VL VLDATTGQN L Q F A T L +TK+DGTA+GG IV + P+ ++G Sbjct: 238 HEVLLVLDATTGQNGLIQARAFTQAAQVTHLALTKLDGTAKGGIAFAIVQEIERPIKYIG 297 Query: 291 VGEGINDLEPFVAKDF 306 GE INDL F + F Sbjct: 298 TGETINDLALFDGESF 313 >gi|42543563|pdb|1RJ9|A Chain A, Structure Of The Heterodimer Of The Conserved Gtpase Domains Signal Recognition Particle (Ffh) And Its Receptor (Ftsy) Length = 304 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 93/185 (50%), Positives = 120/185 (64%) Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT I KL + + G KVM AGDTFR+A QL W R S + G+D+AAL Sbjct: 113 VGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAAL 172 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 AY+A + +A+ D+L +DTAGRLH LM + K+ R + + DP P V VLDA T Sbjct: 173 AYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT 232 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQN L Q + FH G TG+I+TK+DGTA+GG LIPIV T K+P+ F+GVGEG +DL+PF Sbjct: 233 GQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPF 292 Query: 302 VAKDF 306 + F Sbjct: 293 DPEAF 297 >gi|303283296|ref|XP_003060939.1| type II secretory pathway family protein [Micromonas pusilla CCMP1545] gi|226457290|gb|EEH54589.1| type II secretory pathway family protein [Micromonas pusilla CCMP1545] Length = 340 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 116/303 (38%), Positives = 169/303 (55%), Gaps = 15/303 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLT 72 ++ KG + T KL + +++S RL+D V E ELE++LI D G A ++E + Sbjct: 35 RVFKGTSKTREKLSY-MDEMLSLWRLED-VEETLDELEEVLISVDFGPTTAMDVIEVVRE 92 Query: 73 KRYAKDVSV-QRVLYDVSELIHKMLM------PLSKPFNWDFSHRPHVILVVGVNGVGKT 125 + ++S +V + I +L P P P VI+VVGVNG GKT Sbjct: 93 RVEKGEISTGPQVKQALKTAIVDILQRPNGGEPGCAPLALS-EEAPTVIMVVGVNGAGKT 151 Query: 126 TVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 T +GKLS + + ++G KVML GDTFR+AA +QL WA+R+ + G A+ Y+ Sbjct: 152 TTLGKLSNRFALESGAKVMLVPGDTFRAAAAEQLATWAERSDGVMATYKEGMKPGAVCYQ 211 Query: 185 AFKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 A ++A + VD+++ DT+GRLH N LM + + R + + APH L VLD T+G Sbjct: 212 AVQEAIKMGDVDIVLADTSGRLHTNCDLMDELAGVRRSITKSLASAPHETLLVLDGTSGL 271 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 N L Q F TGLI+TK+DGTARGG ++ +V IPV F+GVGE + DL+ F Sbjct: 272 NMLNQARAFSEAVDVTGLILTKLDGTARGGAVVSVVNEMNIPVKFVGVGEKMEDLQTFEP 331 Query: 304 KDF 306 + F Sbjct: 332 ESF 334 >gi|284032677|ref|YP_003382608.1| signal recognition particle-docking protein FtsY [Kribbella flavida DSM 17836] gi|283811970|gb|ADB33809.1| signal recognition particle-docking protein FtsY [Kribbella flavida DSM 17836] Length = 393 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 115/293 (39%), Positives = 175/293 (59%), Gaps = 4/293 (1%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L A + L +G+ ++S +LD+ E++E LI +D+GV Q++VE L T+ Sbjct: 97 RLRAKLARSQSSLGKGLLALLSRDKLDEEAWEDIETTLITADVGVTPTQELVERLRTRVR 156 Query: 76 AKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSK 133 + VS ++ + E + ++ P L + D +P V++VVGVNG GKTT +GKL++ Sbjct: 157 VEGVSGEQARAILREELITLVDPTLDRSLKVDRKDGKPAVVMVVGVNGTGKTTTVGKLAR 216 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 + V+L A DTFR+AA DQL+ W +R V G D A++A++A KQ + Sbjct: 217 VLVAEDKHVVLGAADTFRAAAADQLQTWGERVGVRTVRGPEGGDPASIAFDAVKQGIDES 276 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 DV+++DTAGRLH LM +GK+ RV+++ VL V+DATTGQN L Q +F Sbjct: 277 ADVVLVDTAGRLHTKIGLMDELGKVKRVIEKT--AEVDEVLLVIDATTGQNGLTQARVFA 334 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 V TGL++TK+DGTA+GG +I + +PV +G+GEG +DL PF A+ F Sbjct: 335 EVINVTGLVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGADDLAPFEAEQF 387 >gi|154505346|ref|ZP_02042084.1| hypothetical protein RUMGNA_02861 [Ruminococcus gnavus ATCC 29149] gi|153794389|gb|EDN76809.1| hypothetical protein RUMGNA_02861 [Ruminococcus gnavus ATCC 29149] Length = 316 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 125/301 (41%), Positives = 178/301 (59%), Gaps = 4/301 (1%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66 E + R+L G T + G+ I ++D+ EELE+ LI D+GV +I Sbjct: 2 EEKKGFFRRLVSGLTKTRDNIVSGMDSIFHGFSKIDEDFYEELEETLIMGDLGVHTTTEI 61 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKT 125 +E+L +R K+ ++ LI + L ++F R V+ V+GVNGVGKT Sbjct: 62 IEDL--RRKVKEQHIKEPAACRQLLIDSIKEQLDVGETAYEFEERQSVVFVIGVNGVGKT 119 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+ K + +V+LAA DTFR+AA +QLK WA+R + + + G+D A++ ++A Sbjct: 120 TTIGKLAGKFREQHKRVILAAADTFRAAAGEQLKEWANRAEVEMIGGQEGADPASVVFDA 179 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+A+K D+L+ DTAGRLHN LM + K+ RV+ R A L VLDATTGQNA Sbjct: 180 VAAARARKADILLCDTAGRLHNKKNLMEELKKINRVIDREYQEAYRETLVVLDATTGQNA 239 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L Q F+ VA TG+I+TKMDGTA+GG + I IPV ++GVGE I+DL+ F A + Sbjct: 240 LAQAREFNEVADITGVILTKMDGTAKGGIAVAIQSELGIPVKYIGVGESIDDLQKFDADE 299 Query: 306 F 306 F Sbjct: 300 F 300 >gi|122920835|pdb|2J7P|D Chain D, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh And Ftsy gi|122920836|pdb|2J7P|E Chain E, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh And Ftsy Length = 283 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 93/185 (50%), Positives = 119/185 (64%) Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT I KL + + G KVM AGDTFR+A QL W R S + G+D AAL Sbjct: 92 VGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAAL 151 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 AY+A + +A+ D+L +DTAGRLH LM + K+ R + + DP P V VLDA T Sbjct: 152 AYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT 211 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQN L Q + FH G TG+I+TK+DGTA+GG LIPIV T K+P+ F+GVGEG +DL+PF Sbjct: 212 GQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPF 271 Query: 302 VAKDF 306 + F Sbjct: 272 DPEAF 276 >gi|118137450|pdb|2CNW|D Chain D, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy gi|118137451|pdb|2CNW|E Chain E, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy gi|118137452|pdb|2CNW|F Chain F, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy gi|126030874|pdb|2IYL|D Chain D, Structure Of An Ftsy:gdp Complex Length = 284 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 93/185 (50%), Positives = 119/185 (64%) Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT I KL + + G KVM AGDTFR+A QL W R S + G+D AAL Sbjct: 93 VGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAAL 152 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 AY+A + +A+ D+L +DTAGRLH LM + K+ R + + DP P V VLDA T Sbjct: 153 AYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT 212 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQN L Q + FH G TG+I+TK+DGTA+GG LIPIV T K+P+ F+GVGEG +DL+PF Sbjct: 213 GQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPF 272 Query: 302 VAKDF 306 + F Sbjct: 273 DPEAF 277 >gi|42543233|pdb|1OKK|D Chain D, Homo-Heterodimeric Complex Of The Srp Gtpases gi|315113202|pdb|2XKV|D Chain D, Atomic Model Of The Srp-Ftsy Early Conformation Length = 303 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 93/185 (50%), Positives = 119/185 (64%) Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT I KL + + G KVM AGDTFR+A QL W R S + G+D AAL Sbjct: 112 VGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAAL 171 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 AY+A + +A+ D+L +DTAGRLH LM + K+ R + + DP P V VLDA T Sbjct: 172 AYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT 231 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQN L Q + FH G TG+I+TK+DGTA+GG LIPIV T K+P+ F+GVGEG +DL+PF Sbjct: 232 GQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPF 291 Query: 302 VAKDF 306 + F Sbjct: 292 DPEAF 296 >gi|44887895|sp|P83749|FTSY_THEAQ RecName: Full=Cell division protein ftsY gi|151567970|pdb|2Q9A|A Chain A, Structure Of Apo Ftsy gi|151567971|pdb|2Q9A|B Chain B, Structure Of Apo Ftsy gi|151567972|pdb|2Q9B|A Chain A, Structure Of Ftsy:gmppnp Complex gi|151567973|pdb|2Q9B|B Chain B, Structure Of Ftsy:gmppnp Complex gi|151567974|pdb|2Q9C|A Chain A, Structure Of Ftsy:gmppnp With Mgcl Complex gi|151567975|pdb|2Q9C|B Chain B, Structure Of Ftsy:gmppnp With Mgcl Complex gi|38699377|gb|AAR27056.1| signal recognition receptor [Thermus aquaticus] gi|39598846|gb|AAR28967.1| FtsY [Thermus aquaticus] Length = 304 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 93/185 (50%), Positives = 119/185 (64%) Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT I KL + + G KVM AGDTFR+A QL W R S + G+D AAL Sbjct: 113 VGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAAL 172 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 AY+A + +A+ D+L +DTAGRLH LM + K+ R + + DP P V VLDA T Sbjct: 173 AYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT 232 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQN L Q + FH G TG+I+TK+DGTA+GG LIPIV T K+P+ F+GVGEG +DL+PF Sbjct: 233 GQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPF 292 Query: 302 VAKDF 306 + F Sbjct: 293 DPEAF 297 >gi|294463860|gb|ADE77453.1| unknown [Picea sitchensis] Length = 199 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 91/197 (46%), Positives = 134/197 (68%), Gaps = 1/197 (0%) Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 ++VGVNG GKTT IGKL+ ++ + G+KV++AAGDTFR+AA DQL++WA RT ++ V E Sbjct: 1 MIVGVNGGGKTTSIGKLAYRLKNEGIKVLMAAGDTFRAAASDQLEVWAKRTKSEIVIGEG 60 Query: 175 GS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 A++ +A ++A+ + DV++ DT+GRLH + LM + R + ++ P AP+ V Sbjct: 61 EKVKPASVLSQAVRRAKEENFDVVLCDTSGRLHTDYALMEELIACKRAITKVLPSAPNEV 120 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L VLD TTG N L Q F+ V G TG I+TK+DG+ARGG ++ +V IPV F+G+GE Sbjct: 121 LLVLDGTTGLNMLPQAREFNEVVGVTGFILTKLDGSARGGCVVSVVDELAIPVKFVGIGE 180 Query: 294 GINDLEPFVAKDFSAVI 310 ++DL+PF A+ F I Sbjct: 181 QLDDLQPFDAEAFVNAI 197 >gi|320087981|emb|CBY97743.1| Cell division protein ftsY homolog [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 173 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 81/164 (49%), Positives = 117/164 (71%) Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 MLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A+ VDVLI DTA Sbjct: 1 MLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNVDVLIADTA 60 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRL N S LM + K++RV+K+LD APH V+ +DA+TGQNA+ Q ++FH G TG+ Sbjct: 61 GRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGIT 120 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +TK+DGTA+GG + + IP+ ++GVGE I DL PF A DF Sbjct: 121 LTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 164 >gi|282850850|ref|ZP_06260224.1| signal recognition particle-docking protein FtsY [Lactobacillus gasseri 224-1] gi|282557802|gb|EFB63390.1| signal recognition particle-docking protein FtsY [Lactobacillus gasseri 224-1] Length = 301 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 97/259 (37%), Positives = 153/259 (59%), Gaps = 5/259 (1%) Query: 54 IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 I SD+G A+++ + L L + D Q ++ + ++ K D Sbjct: 35 IESDVGFETAEELTDSLRDEAKLQNAKSHDDLKQVIVEKLVDIYDKGGEGEDSKLADDPD 94 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +P+V L VGVNG GKTT IGKL+K++ D+G VM+ A DTFR+ A++QL W R + Sbjct: 95 AKPNVYLFVGVNGAGKTTTIGKLAKRIKDSGKSVMMVAADTFRAGAVEQLVEWGRRDGVE 154 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V +D A++ Y+ K+A+ + +D L++DTAGRL N LM+ + K+ R +K++ P Sbjct: 155 VVTGPEKADPASVVYDGVKKAKDRGIDFLLVDTAGRLQNKVNLMSELDKIKRTIKKILPD 214 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P+ VL VLD +TGQNAL Q + F TGL++TK+DG+++GG ++ I +PV Sbjct: 215 QPNEVLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMDLPVKL 274 Query: 289 LGVGEGINDLEPFVAKDFS 307 +G+GE ++DL F A+ F+ Sbjct: 275 VGLGEKVDDLANFDAEKFA 293 >gi|320096198|ref|ZP_08027786.1| cell division protein FtsY [Actinomyces sp. oral taxon 178 str. F0338] gi|319976863|gb|EFW08618.1| cell division protein FtsY [Actinomyces sp. oral taxon 178 str. F0338] Length = 305 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 117/293 (39%), Positives = 175/293 (59%), Gaps = 12/293 (4%) Query: 23 STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----LTKRYAKD 78 + S L I DI+S L EE+E+ L+ +D+G+ +++E L ++ Sbjct: 9 AASGALGRAIVDILSRGELKAADWEEIEESLLIADLGLEATDQLMEALKRRVAVEKVGDT 68 Query: 79 VSVQRVLYD-VSELIHKML---MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 ++R+L + + L+ + + L KP D P +L+VGVNG GKTT +GKL++ Sbjct: 69 AGIRRILREELLALVDPAMDRSLRLDKP-EADGRALPAAVLMVGVNGTGKTTTVGKLARV 127 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKK 193 + G V+L A DTFR+AA DQL W R D V SE G+D A++A+EA K+ ++ Sbjct: 128 LVADGRTVLLGAADTFRAAAADQLATWGQRVGVDVVRSEREGADPASVAFEAVKEGASRG 187 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 VDV+++DTAGRL N S LM +GK+ RV+ R P VL VLDATTGQN L+Q +F Sbjct: 188 VDVVVVDTAGRLQNKSTLMDELGKIKRVMDRQAPVG--EVLLVLDATTGQNGLQQALVFA 245 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G TG+++TK+DG+A+GG ++ + +PV F+G+GEG +DL PF + F Sbjct: 246 EAVGVTGIVLTKLDGSAKGGIVVSVQRQLGVPVKFVGLGEGADDLAPFDPEGF 298 >gi|284931182|gb|ADC31120.1| signal recognition particle receptor ftsY [Mycoplasma gallisepticum str. F] Length = 348 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 112/316 (35%), Positives = 174/316 (55%), Gaps = 17/316 (5%) Query: 21 FASTSLKLKEGI-------TDIISSRR-----LDDGVREELEDLLIRSDIGVAVAQKIVE 68 F +T K +G+ +DII+ L++ E+L D ++ DIG +KIV+ Sbjct: 31 FETTQEKFDDGLKKSSNSFSDIINQLSTKYVSLNEAFYEDLFDAFVQLDIGYNATKKIVD 90 Query: 69 ELLTK-RYAKDVS---VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 ++ + +Y K V +++++ D + + ++ N+ HR +V LVVGVNGVGK Sbjct: 91 AIVEEIKYQKVVDPTLIKQIIIDKLFVYYIQDSEVNIDLNYQ-DHRQNVFLVVGVNGVGK 149 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT I KL+ KV+L A DTFR+ AI QL IWA+R D E D AA+ YE Sbjct: 150 TTSIAKLANYYKKLNKKVLLIAADTFRAGAIQQLNIWAERLEVDIYKDESKKDPAAVIYE 209 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A+ + D++I DT+GRL N LM + K+ V+++ L VLDATTGQ+ Sbjct: 210 GLNFAKQRDYDLVICDTSGRLQNKVNLMNELKKINNVIEKFIGRNVDETLLVLDATTGQS 269 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 L Q ++FH V+ TG+I++KMD +++GG ++ I IPV +G+GE ++DL F + Sbjct: 270 GLIQAKVFHEVSKITGIILSKMDSSSKGGIILGIKDLFNIPVKLIGLGEQLDDLVSFDLQ 329 Query: 305 DFSAVITGCLDYGEEK 320 + +T L+ EK Sbjct: 330 KYLISLTANLNLDYEK 345 >gi|161508236|ref|YP_001577669.1| cell division protein [Lactobacillus helveticus DPC 4571] gi|260101399|ref|ZP_05751636.1| signal recognition particle-docking protein FtsY [Lactobacillus helveticus DSM 20075] gi|160349225|gb|ABX27899.1| Cell division protein [Lactobacillus helveticus DPC 4571] gi|260084739|gb|EEW68859.1| signal recognition particle-docking protein FtsY [Lactobacillus helveticus DSM 20075] gi|328465666|gb|EGF36883.1| signal recognition particle-docking protein FtsY [Lactobacillus helveticus MTCC 5463] Length = 430 Score = 179 bits (454), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 98/261 (37%), Positives = 152/261 (58%), Gaps = 9/261 (3%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-------WD 106 I SD+G A+++ +EL + ++ + L V ++ K++ K N + Sbjct: 164 IESDVGYETAEQLTDELREEAKLQNAKSRDDLKKV--IVEKLVDLYDKDGNSEDEKLIYH 221 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P+V L VGVNG GKTT IGKL+K+ D G V++AA DTFR+ A++QL W R Sbjct: 222 PEDKPNVYLFVGVNGAGKTTTIGKLAKRFKDEGKSVIMAAADTFRAGAVEQLVEWGKRVD 281 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 V + +D A++ Y+A ++A + D L++DTAGRL N LMA + K+ R++K+L Sbjct: 282 VPVVTGKEKADPASVVYDATERAIKENADYLLVDTAGRLQNKKNLMAELEKIQRIIKKLL 341 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P P L VLD +TGQNAL Q + F TGL++TK+DG+++GG ++ I +PV Sbjct: 342 PDQPTETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMNLPV 401 Query: 287 YFLGVGEGINDLEPFVAKDFS 307 +G+GE DL F A +++ Sbjct: 402 KLVGLGEKAEDLADFDAANYA 422 >gi|57900094|dbj|BAD88156.1| putative chloroplast SRP receptor cpFtsY precursor [Oryza sativa Japonica Group] gi|215736953|dbj|BAG95882.1| unnamed protein product [Oryza sativa Japonica Group] gi|215766594|dbj|BAG98698.1| unnamed protein product [Oryza sativa Japonica Group] Length = 199 Score = 179 bits (454), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 90/197 (45%), Positives = 136/197 (69%), Gaps = 1/197 (0%) Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SE 173 ++VGVNG GKTT +GKL+ + + G+KV++AAGDTFR+AA DQL++WA+RT ++ V ++ Sbjct: 1 MIVGVNGGGKTTSLGKLAYRFKNEGVKVLMAAGDTFRAAARDQLEVWAERTGSEIVIDND 60 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 + A++ +A K+ + + D+++ DT+GRLH N LM + +V+ + P AP+ + Sbjct: 61 KKAKPASVLSQAVKRGKREGFDLVLCDTSGRLHTNYGLMEELVSCKKVIAKALPGAPNEI 120 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L VLD TTG N L+Q F+ V G TG ++TK+DGTARGG ++ +V IPV F+GVGE Sbjct: 121 LLVLDGTTGLNMLQQAREFNDVVGVTGFVLTKLDGTARGGCVVSVVDELGIPVKFIGVGE 180 Query: 294 GINDLEPFVAKDFSAVI 310 G+ DL+PF A+ F I Sbjct: 181 GMEDLQPFDAEAFVEAI 197 >gi|294660283|ref|NP_852953.2| signal recognition particle receptor ftsY [Mycoplasma gallisepticum str. R(low)] gi|284811939|gb|AAP56521.2| signal recognition particle receptor ftsY [Mycoplasma gallisepticum str. R(low)] gi|284930417|gb|ADC30356.1| signal recognition particle receptor ftsY [Mycoplasma gallisepticum str. R(high)] Length = 348 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 111/316 (35%), Positives = 174/316 (55%), Gaps = 17/316 (5%) Query: 21 FASTSLKLKEGI-------TDIISSRR-----LDDGVREELEDLLIRSDIGVAVAQKIVE 68 F +T K +G+ +DII+ L++ E+L D ++ DIG +KIV+ Sbjct: 31 FETTQEKFDDGLKKSSNSFSDIINQLSTKYVSLNEAFYEDLFDAFVQLDIGYNATKKIVD 90 Query: 69 ELLTK-RYAKDVS---VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 ++ + +Y K V +++++ D + + ++ N+ HR +V LVVGVNGVGK Sbjct: 91 AIVEEIKYQKVVDPTLIKQIIIDKLFVYYIQDSEVNIDLNYQ-DHRQNVFLVVGVNGVGK 149 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT I KL+ K++L A DTFR+ AI QL IWA+R D E D AA+ YE Sbjct: 150 TTSIAKLANYYKKLNKKILLIAADTFRAGAIQQLNIWAERLEVDIYKDESKKDPAAVIYE 209 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A+ + D++I DT+GRL N LM + K+ V+++ L VLDATTGQ+ Sbjct: 210 GLNFAKQRDYDLVICDTSGRLQNKVNLMNELKKINNVIEKFIGRNVDETLLVLDATTGQS 269 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 L Q ++FH V+ TG+I++KMD +++GG ++ I IPV +G+GE ++DL F + Sbjct: 270 GLIQAKVFHEVSKITGIILSKMDSSSKGGIILGIKDLFNIPVKLIGLGEQLDDLVSFDLQ 329 Query: 305 DFSAVITGCLDYGEEK 320 + +T L+ EK Sbjct: 330 KYLISLTANLNLDYEK 345 >gi|156743415|ref|YP_001433544.1| signal recognition particle-docking protein FtsY [Roseiflexus castenholzii DSM 13941] gi|156234743|gb|ABU59526.1| signal recognition particle-docking protein FtsY [Roseiflexus castenholzii DSM 13941] Length = 326 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 107/270 (39%), Positives = 156/270 (57%), Gaps = 12/270 (4%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-- 100 D + ++LE LLI++D+GV +V TK V+R L +M+ L Sbjct: 55 DELWDDLEALLIQADVGVETTMYLVNR--TKDRCNRYGVKRAREARDMLKAEMVRVLQEQ 112 Query: 101 ---KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAID 156 +P N + P ++LVVGVNG GKTT+I KL+ ++ + G +V+LAAGDTFR+AA + Sbjct: 113 ERRQPVNAN----PSIVLVVGVNGAGKTTLIAKLAYRLKNQFGKRVLLAAGDTFRAAATE 168 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL+ WA+R + G+D A+ Y+A + DVLIIDTAGRLH + LM + Sbjct: 169 QLETWAERVGVPVISRGQGADPGAVVYDAIEAVSGGDFDVLIIDTAGRLHAKTNLMLELQ 228 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 K+ +++R P APH VL V+DATTGQN + Q + F T + +TK+DGTA+GG Sbjct: 229 KLRNIIRRKFPDAPHEVLLVIDATTGQNGVLQAKSFLKAVDVTDVAVTKLDGTAKGGIAF 288 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 I + P+ ++G GE + DL F A+ F Sbjct: 289 AIAQDIERPIRYVGTGEKMTDLALFDAETF 318 >gi|253583750|ref|ZP_04860948.1| cell division protein ftsY [Fusobacterium varium ATCC 27725] gi|251834322|gb|EES62885.1| cell division protein ftsY [Fusobacterium varium ATCC 27725] Length = 356 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 117/270 (43%), Positives = 166/270 (61%), Gaps = 19/270 (7%) Query: 18 TKGFASTSLKLK-----EGI-----TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 +KGF TSLK K EG+ + I+ +D + EELED+LI+SDIG+ + KIV Sbjct: 83 SKGFF-TSLKDKLFKSREGLFGKLKSFILGRSVIDFEMYEELEDILIQSDIGMDMTVKIV 141 Query: 68 ---EELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 E+ + KR KD + +Y V E++ L+ + + +VILVVGVNGVG Sbjct: 142 GALEKEVKKRGIKD---PKDIYPVLKEVMEGFLIKEGNDIVIE-DGKLNVILVVGVNGVG 197 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+ K G KV+L AGDTFR+AAI+QL+ WA R+ A+ V S GSD A+ + Sbjct: 198 KTTTIGKLASKFIKDGKKVILGAGDTFRAAAIEQLEEWAKRSGAEIVKSTQGSDPGAVVF 257 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 + A+++ D+ IIDTAGRLHN + LM + K+ ++K+ + + V+D TTGQ Sbjct: 258 DTLAAAESRGADIAIIDTAGRLHNKNNLMKELEKIHNIIKKKLGDQHYESILVIDGTTGQ 317 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 N L Q ++F+ V TG I+TK+DGTA+GG Sbjct: 318 NGLSQAKVFNEVTDLTGFIITKLDGTAKGG 347 >gi|160915312|ref|ZP_02077525.1| hypothetical protein EUBDOL_01321 [Eubacterium dolichum DSM 3991] gi|158433111|gb|EDP11400.1| hypothetical protein EUBDOL_01321 [Eubacterium dolichum DSM 3991] Length = 323 Score = 179 bits (453), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 116/295 (39%), Positives = 168/295 (56%), Gaps = 13/295 (4%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LS + K + F+ +L G R +D+ EEL L+ +D+G+ AQK+V+E+ Sbjct: 21 LSGLDKSKRSFSERIRRLSLGF------RGIDEEFLEELMVALLEADLGIKTAQKVVDEV 74 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH----VILVVGVNGVGKTT 126 + + +S ++SE + ++L + + + H VI +VGVNG GKTT Sbjct: 75 ENRALDRKLSS---FDEISECLVEVLRDMYVSYEDEAMHINEQGVTVIYMVGVNGSGKTT 131 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL+K D G KV+LAA DTFR+ A+DQL WADR D + D +A+ +A Sbjct: 132 TTAKLTKSFLDEGKKVVLAAADTFRAGAVDQLATWADRLGVDCIKGRENGDPSAVIVDAA 191 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+ D LI DTAGRL N + LM + KM RV++R APH V VLDATTGQN + Sbjct: 192 RFAKEHHADYLICDTAGRLQNKTNLMNELSKMRRVVEREIEGAPHEVWLVLDATTGQNGI 251 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 Q ++F TG+I+TK+DGTA+GG +I I +PV ++G+GE + DL PF Sbjct: 252 SQAKIFTETTNVTGIILTKLDGTAKGGIVIAIRDLLGLPVKYIGLGETLEDLRPF 306 >gi|242310360|ref|ZP_04809515.1| signal recognition particle protein [Helicobacter pullorum MIT 98-5489] gi|239522758|gb|EEQ62624.1| signal recognition particle protein [Helicobacter pullorum MIT 98-5489] Length = 294 Score = 179 bits (453), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 103/271 (38%), Positives = 158/271 (58%), Gaps = 10/271 (3%) Query: 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 +EELE++LI +D+ + + I+ L + ++ V + E + + +K N Sbjct: 29 KEELEEVLIATDMDYDLIEMILSPLGEEISKNELEVALLRLFRGESYYDKVQ--AKQVNA 86 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 +P V L+VGVNG GKTT I KL+ G V+L AGDTFR+AAI+QL +W +R Sbjct: 87 ----KPCVDLIVGVNGAGKTTTIAKLANLYQKQGKSVILGAGDTFRAAAIEQLSLWGERL 142 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + S+ G D +A+A++ A AK +D +IIDTAGRLHN S L + K++R+ + Sbjct: 143 KIPVISSKQGHDPSAVAFDTITSAAAKNLDCVIIDTAGRLHNQSNLQNELQKIVRICNKA 202 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMF-HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 APH + +LD T G ++L Q ++F + G G+I+TK+DGT++GG + I+ T ++ Sbjct: 203 KEGAPHRKILILDGTQGTSSLDQAKIFSQTLGGVDGVIITKLDGTSKGGAIFSIIHTLRV 262 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ ++GVGEG DL F D S I LD Sbjct: 263 PILYIGVGEGAEDLIEF---DESQYIQTILD 290 >gi|206900990|ref|YP_002250665.1| signal recognition particle-docking protein FtsY [Dictyoglomus thermophilum H-6-12] gi|206740093|gb|ACI19151.1| signal recognition particle-docking protein FtsY [Dictyoglomus thermophilum H-6-12] Length = 297 Score = 178 bits (452), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 105/289 (36%), Positives = 172/289 (59%), Gaps = 13/289 (4%) Query: 19 KGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78 KGFA E + +I+ R+DD + +ELE I+SD+G+ + +I+ E+ ++ Sbjct: 11 KGFA-------ERLQNILKFSRVDDNLLDELEMEFIQSDLGLELTNEIISEIRKRKITNT 63 Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137 ++ L++ + I + L + D R +V++ +GVNG GKT+ +GK + + Sbjct: 64 PELRDFLFNYLKAILENL-----DYRLDLLEDRLNVVVFIGVNGTGKTSTVGKFAYYLKG 118 Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197 G ++AA DTFR+AAIDQ+KIW +R + + + G+D A+ + A + A+A+ +VL Sbjct: 119 LGYSPIIAAADTFRAAAIDQVKIWGERVGVEVIAQKEGADPGAVVFNAIEAARARNKNVL 178 Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257 ++DTAGR+H S L+ + K+ RV++R + P L V+DAT GQN +RQVE FH Sbjct: 179 LVDTAGRMHTKSNLIEELKKINRVVERTLGYGPSENLIVIDATLGQNVIRQVETFHNAVN 238 Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TG ++TK+DGTA+GG + +V IPV + +GEG+ DL+ F +F Sbjct: 239 LTGAVLTKLDGTAKGGVIFNVVRRFNIPVKLVTIGEGVEDLKVFDPNEF 287 >gi|284992402|ref|YP_003410956.1| signal recognition particle-docking protein FtsY [Geodermatophilus obscurus DSM 43160] gi|284065647|gb|ADB76585.1| signal recognition particle-docking protein FtsY [Geodermatophilus obscurus DSM 43160] Length = 407 Score = 178 bits (452), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 117/305 (38%), Positives = 178/305 (58%), Gaps = 9/305 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L A + L G+ +++ RL + EE+E+ L+ +D+GVA Q+IV+ L T+ Sbjct: 107 RLRSRLARSQSNLGRGLLTVLARERLTEDDWEEVEETLLAADVGVAATQQIVDRLRTQSM 166 Query: 76 ----AKDVSVQRVLYDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGK 130 A ++R+L V EL + L + D RP + LVVGVNG GKTT +GK Sbjct: 167 VLATASGPELRRLL--VRELTAVLGPDLDRSLGVDRHDGRPGIALVVGVNGAGKTTTVGK 224 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +++ + G V+L A DTFR+AA DQL+ W +R V G+D A++A++A + Sbjct: 225 IARVLVGDGKSVVLGAADTFRAAAADQLETWGERVGVLTVRGREGADPASVAFDAARTGI 284 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 +VD ++IDTAGRLH LM +GK+ RV++++ P VL VLDATTGQN + Q Sbjct: 285 EGEVDTVVIDTAGRLHTKGGLMDELGKIRRVVEKVAPVT--EVLLVLDATTGQNGVVQAR 342 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F TG+++TK+DGTA+GG ++ + IPV +G+GEG +DL PF + F+ + Sbjct: 343 VFTEAVTVTGVVLTKLDGTAKGGIVVAVQRELGIPVKLVGLGEGADDLAPFEPEAFAEAL 402 Query: 311 TGCLD 315 G D Sbjct: 403 VGGAD 407 >gi|300868308|ref|ZP_07112936.1| signal recognition particle-docking protein FtsY [Oscillatoria sp. PCC 6506] gi|300333688|emb|CBN58120.1| signal recognition particle-docking protein FtsY [Oscillatoria sp. PCC 6506] Length = 644 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 111/323 (34%), Positives = 186/323 (57%), Gaps = 18/323 (5%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +++ E ++W++KL +G T L + I+ L+ E+E LL+++D+GV Sbjct: 325 QISFEEITWLQKLRQGLERTRRSLINQLKAIVGQGPLNQDAVIEIESLLLQADVGVEATD 384 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP------------- 111 IV L K + + ++ + + +L+ ++L KP S P Sbjct: 385 IIVNALQQKLREEVLPPEQAIAYLKKLLRELL---DKPCQESASGNPAYSLTFAPEKDTL 441 Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 ++ L+VGVNG GKTT IGK++ + + ++AA DTFR+AA++Q+K+W R+ + + Sbjct: 442 NIWLIVGVNGAGKTTTIGKIAHLAQKSDYRTLIAAADTFRAAAVEQVKVWGARSDVEVIA 501 Query: 172 SE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + +D AA+ ++A AQ++ ++LI+DTAGRL N LM + K+ R++ + P A Sbjct: 502 NPGKNTDPAAVVFDAIAAAQSRNTELLIVDTAGRLQNKKNLMDELSKIRRIIDKKAPGAV 561 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 L VLDAT GQN LRQ E+F A +G+++TK+DGTA+GG + +V +P+ F+G Sbjct: 562 VESLLVLDATLGQNGLRQAEVFSEAAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIG 621 Query: 291 VGEGINDLEPFVAKDF-SAVITG 312 VGE I DL PF + +F A+++G Sbjct: 622 VGESIEDLRPFSSYEFVEALLSG 644 >gi|224419058|ref|ZP_03657064.1| signal recognition particle protein [Helicobacter canadensis MIT 98-5491] gi|253827998|ref|ZP_04870883.1| cell division protein ftsY [Helicobacter canadensis MIT 98-5491] gi|313142566|ref|ZP_07804759.1| signal recognition particle protein [Helicobacter canadensis MIT 98-5491] gi|253511404|gb|EES90063.1| cell division protein ftsY [Helicobacter canadensis MIT 98-5491] gi|313131597|gb|EFR49214.1| signal recognition particle protein [Helicobacter canadensis MIT 98-5491] Length = 295 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 101/271 (37%), Positives = 156/271 (57%), Gaps = 10/271 (3%) Query: 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 +EELE++LI +D+ + + I+ L + ++ V + E + + Sbjct: 29 KEELEEVLIATDMDYDLIELILSPLGDEISKNELEVALLRLFRGESYYDKVQA------K 82 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 +P V L+VGVNG GKTT I KL+ + G V+L AGDTFR+AAI+QL +W +R Sbjct: 83 QVEAKPCVDLIVGVNGAGKTTTIAKLANRYKKQGKSVILGAGDTFRAAAIEQLTLWGNRL 142 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + S+ G D +A+A++ A AK +D +IIDTAGRLHN S L + K++R+ + Sbjct: 143 GIPVIASKQGHDPSAVAFDTITSAVAKGIDCVIIDTAGRLHNQSNLQNELQKILRICNKA 202 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMF-HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 APH + +LD T G ++L Q ++F + G G+I+TK+DGT++GG + I+ T ++ Sbjct: 203 KEGAPHRKILILDGTQGTSSLDQAKVFSQTLGGIDGVIITKLDGTSKGGAIFSIIYTLRV 262 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ ++GVGEG DL F D S I LD Sbjct: 263 PILYIGVGEGAEDLVEF---DESKYIQTILD 290 >gi|282854590|ref|ZP_06263925.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes J139] gi|282582172|gb|EFB87554.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes J139] gi|314981871|gb|EFT25964.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL110PA3] Length = 396 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 116/293 (39%), Positives = 178/293 (60%), Gaps = 14/293 (4%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87 L G+ +++S+ +LDD ++ E LI SD+GV ++VE+L ++ +S Sbjct: 105 LARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDS---AH 161 Query: 88 VSELIHKMLMPLSKP-----FNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 E++H L+ L P N D +P V+L+VGVNG GKTT GKL++ + G Sbjct: 162 AREVLHHELVELVGPDMDRSINLDRPEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEGKT 221 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 V+L A DTFR+AA +QL+ W +R V + G+D A++AYEA + VDV+++DT Sbjct: 222 VLLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQAGIDDGVDVVLVDT 281 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AGRLH + LM +GK+ RV+++L P + VL VLDATTGQN L Q +F V TG+ Sbjct: 282 AGRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLTQACIFSEVVDVTGI 339 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 +++K+DG+A+GG ++ + +PV +G+GEG +DL PF A +F +TG + Sbjct: 340 VLSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNF---VTGLM 389 >gi|195952989|ref|YP_002121279.1| signal recognition particle-docking protein FtsY [Hydrogenobaculum sp. Y04AAS1] gi|195932601|gb|ACG57301.1| signal recognition particle-docking protein FtsY [Hydrogenobaculum sp. Y04AAS1] Length = 463 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 109/282 (38%), Positives = 164/282 (58%), Gaps = 9/282 (3%) Query: 32 ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL 91 + I +R++D+ + EELE+ LIR+DI V + IVE L K+ A ++Q L Sbjct: 178 LNTIFINRKIDEELFEELEEKLIRADINVKLVLNIVENL--KKEAIKRNLQTAEQLKPLL 235 Query: 92 IHKMLMPLSKPFNWDF-------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 ++L + N D +P VIL +GVNG GKTT IGKL+ KV+L Sbjct: 236 KEELLSIIRNCGNKDLFFELLNEKEKPFVILFLGVNGSGKTTTIGKLASIYKAQNKKVLL 295 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 A DTFR+AAI+QL++WA R D V + G+D A++A+EA K+ + DV+IIDTAGR Sbjct: 296 GAADTFRAAAIEQLEVWAQRAQVDIVKKQEGADPASVAFEATKKGLEEDYDVVIIDTAGR 355 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 LH L+ + K+ + +++ AP L V+D+T GQN++ Q ++F GL++T Sbjct: 356 LHTKEPLINELRKIKKSIQKAYEKAPQKALLVIDSTIGQNSISQAKIFKEAVDINGLVIT 415 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 K+DGT++GG +I I +P+Y GE + DL+PF + F Sbjct: 416 KLDGTSKGGSVISICKDLALPIYMTADGERMEDLDPFDPETF 457 >gi|314966099|gb|EFT10198.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL082PA2] gi|327328024|gb|EGE69793.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL103PA1] Length = 393 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 116/293 (39%), Positives = 178/293 (60%), Gaps = 14/293 (4%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87 L G+ +++S+ +LDD ++ E LI SD+GV ++VE+L ++ +S Sbjct: 102 LARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDS---AH 158 Query: 88 VSELIHKMLMPLSKP-----FNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 E++H L+ L P N D +P V+L+VGVNG GKTT GKL++ + G Sbjct: 159 AREVLHHELVELVGPDMDRSINLDRPEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEGKT 218 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 V+L A DTFR+AA +QL+ W +R V + G+D A++AYEA + VDV+++DT Sbjct: 219 VLLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQAGIDDGVDVVLVDT 278 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AGRLH + LM +GK+ RV+++L P + VL VLDATTGQN L Q +F V TG+ Sbjct: 279 AGRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLTQACIFSEVVDVTGI 336 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 +++K+DG+A+GG ++ + +PV +G+GEG +DL PF A +F +TG + Sbjct: 337 VLSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNF---VTGLM 386 >gi|152992192|ref|YP_001357913.1| signal recognition particle receptor FtsY [Sulfurovum sp. NBC37-1] gi|151424053|dbj|BAF71556.1| signal recognition particle receptor FtsY [Sulfurovum sp. NBC37-1] Length = 288 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 92/259 (35%), Positives = 154/259 (59%), Gaps = 13/259 (5%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 ED+L+ +D+ +A+++++ L K + R+ + + ++ +W S Sbjct: 32 FEDILLEADVNYELAERLLDALPEK-------INRI-----QAFNSLISVFQYKADWKES 79 Query: 109 H-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 + +P+V +++GVNG GKTT I KL+ + G V+L AGDTFR+AAI+QL WAD+ Sbjct: 80 NAKPYVEMIIGVNGAGKTTTIAKLAYRYQQEGKGVILGAGDTFRAAAIEQLIRWADKLEV 139 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V + G D +A+ Y+ + A+A+++D +IIDTAGRLH + L + KMIRV + Sbjct: 140 PIVSTRQGHDPSAVVYDTIEAAKARRLDNVIIDTAGRLHTQTNLSEELKKMIRVAGKAME 199 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 APH + +LD T G +++ Q F + G G+I+TK+DGTA+GG ++ I ++P++ Sbjct: 200 GAPHRKMLILDGTQGSSSINQARAFDEMIGIDGIIITKLDGTAKGGSVLSIADELQMPIF 259 Query: 288 FLGVGEGINDLEPFVAKDF 306 ++G GE DL F A ++ Sbjct: 260 YIGTGEQPKDLIRFKANEY 278 >gi|331091061|ref|ZP_08339903.1| signal recognition particle-docking protein FtsY [Lachnospiraceae bacterium 2_1_46FAA] gi|330405283|gb|EGG84819.1| signal recognition particle-docking protein FtsY [Lachnospiraceae bacterium 2_1_46FAA] Length = 314 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 124/306 (40%), Positives = 184/306 (60%), Gaps = 10/306 (3%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64 + E + ++L G T + + I + ++D+ EELE++LI D+GV Sbjct: 1 MGEEKKGFFKRLVSGLTKTRDSIVSSMDSIFNGFSKIDEEFYEELEEVLIMGDLGVQATY 60 Query: 65 KIVEELLTK----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 ++++L K R + + +++L D + +M + + ++F R V+LV+GVN Sbjct: 61 AVLDDLRAKVKEQRIKEPMECKQLLID--SIKEQMRVGETA---YEFEDRTSVVLVIGVN 115 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT IGKL+ K+ KV+LAA DTFR+AA +QL WA R A+ + + G+D AA Sbjct: 116 GVGKTTTIGKLAGKLRANNKKVVLAAADTFRAAAGEQLVEWARRADAELIGGQDGADPAA 175 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + Y+A A+A+ DVL+ DTAGRLHN LM + K+ RVL+R P A L VLD T Sbjct: 176 IVYDAVAAAKARHADVLLCDTAGRLHNKKNLMEELKKINRVLEREYPEAYRETLVVLDGT 235 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNAL Q F+ VA TG+++TKMDG+A+GG + I KIPV ++GVGE I+DL+ Sbjct: 236 TGQNALAQAREFNEVADITGIVLTKMDGSAKGGIAVAIQSELKIPVKYIGVGESIDDLQK 295 Query: 301 FVAKDF 306 F + +F Sbjct: 296 FDSDEF 301 >gi|315094950|gb|EFT66926.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL060PA1] Length = 393 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 116/293 (39%), Positives = 178/293 (60%), Gaps = 14/293 (4%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87 L G+ +++S+ +LDD ++ E LI SD+GV ++VE+L ++ +S Sbjct: 102 LARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDS---AH 158 Query: 88 VSELIHKMLMPLSKP-----FNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 E++H L+ L P N D +P V+L+VGVNG GKTT GKL++ + G Sbjct: 159 AREVLHHELVELVGPDMDRSINLDRPEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEGKT 218 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 V+L A DTFR+AA +QL+ W +R V + G+D A++AYEA + VDV+++DT Sbjct: 219 VLLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQAGIDDGVDVVLVDT 278 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AGRLH + LM +GK+ RV+++L P + VL VLDATTGQN L Q +F V TG+ Sbjct: 279 AGRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLTQACIFSEVVDVTGI 336 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 +++K+DG+A+GG ++ + +PV +G+GEG +DL PF A +F +TG + Sbjct: 337 VLSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNF---VTGLM 386 >gi|329943127|ref|ZP_08291901.1| signal recognition particle-docking protein FtsY [Chlamydophila psittaci Cal10] gi|332287710|ref|YP_004422611.1| putative cell division protein [Chlamydophila psittaci 6BC] gi|313848284|emb|CBY17285.1| putative cell division protein [Chlamydophila psittaci RD1] gi|325506713|gb|ADZ18351.1| putative cell division protein [Chlamydophila psittaci 6BC] gi|328814674|gb|EGF84664.1| signal recognition particle-docking protein FtsY [Chlamydophila psittaci Cal10] gi|328914963|gb|AEB55796.1| signal recognition particle-docking protein FtsY [Chlamydophila psittaci 6BC] Length = 284 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 100/272 (36%), Positives = 150/272 (55%), Gaps = 8/272 (2%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-- 96 + L + E E L +D G + +++ L R +V+ + VS L+ + L Sbjct: 15 KTLSPDLLEFTESLFYEADFGSDLTEELCSRLRKCRKPDASTVKDL---VSSLLRETLDN 71 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 +P +P P V L++G NG GKTT + KL+ KVM+ A DTFRSA +D Sbjct: 72 LPHVEPCQ---GQAPMVSLILGTNGSGKTTTVAKLAHYHMSRSEKVMIVATDTFRSAGMD 128 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 Q++ WAD+ FV + G D AA+AY+ A ++ D ++IDT+GRLH ++ L+ + Sbjct: 129 QMRCWADKLGCGFVSGKPGGDPAAIAYDGIASAMSRGYDRVLIDTSGRLHTHTNLLNELS 188 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 K++ V ++ P +PH L +DAT G N + QV +FH +GLI+TK+DG+A+GG L Sbjct: 189 KIVSVCNKIHPGSPHERLMTIDATLGGNVIEQVRVFHDAIPLSGLILTKVDGSAKGGTLF 248 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + KIP F+G GE I DLE F F A Sbjct: 249 RVAKQLKIPTKFVGYGELIGDLEEFHIDRFLA 280 >gi|309791904|ref|ZP_07686387.1| signal recognition particle-docking protein FtsY [Oscillochloris trichoides DG6] gi|308226076|gb|EFO79821.1| signal recognition particle-docking protein FtsY [Oscillochloris trichoides DG6] Length = 322 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 107/267 (40%), Positives = 157/267 (58%), Gaps = 6/267 (2%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102 D + +ELE+ LI+ D+G+ +V TK ++ +V +++ ++ + Sbjct: 53 DELWDELEESLIQGDVGLETTLYLVNR--TKDRVNRHGTKKA-REVRDMLKAEMVRTFQE 109 Query: 103 F--NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLK 159 F + RP++ILVVGVNG GKTT+I KL+ + G KV+LAAGDTFR+AA +QL+ Sbjct: 110 FAGQKTINARPYIILVVGVNGAGKTTLIAKLAHRYKHRFGKKVLLAAGDTFRAAATEQLE 169 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 WA R V G+D+AA+ Y+ A + VDVLIIDTAGRL LM + K+ Sbjct: 170 TWAARADVPCVSMGQGADSAAVVYKGLDAALEQNVDVLIIDTAGRLQAKYNLMKELEKIR 229 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 +++R P APH VL V+DATTGQN + Q + F AG T + +TK+DGTA+GG I Sbjct: 230 NIIQRKIPDAPHEVLLVIDATTGQNGVLQAKAFLQSAGVTDVAVTKLDGTAKGGIAFAIS 289 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDF 306 + P+ ++G GE + DL F ++ F Sbjct: 290 QDIERPIRYIGTGEKMEDLAMFDSQSF 316 >gi|295109855|emb|CBL23808.1| signal recognition particle-docking protein FtsY [Ruminococcus obeum A2-162] Length = 296 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 118/292 (40%), Positives = 171/292 (58%), Gaps = 10/292 (3%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64 ++ E + ++L G T + G I S +D+ EELE++LI DIG+ Sbjct: 1 MSEEKKGFFKRLVSGLTKTRDNIVAGFDSIFSGYSSIDEDFYEELEEILIMGDIGINATS 60 Query: 65 KIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 I+E L + A+ + +++L ++ + +M + ++ ++F +R VILV+GVN Sbjct: 61 SIIEHLKEQVSAQHIKNPMECKQLL--INSIKEQMRVDSTE---YEFENRKSVILVIGVN 115 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT +GKL+ K+ D G KV+LAA DTFR+AA +QL WA R D + + G+D A+ Sbjct: 116 GVGKTTSVGKLAGKLKDQGKKVILAAADTFRAAAGEQLAQWASRAGVDLIGGQEGADPAS 175 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + Y+A A+A+ DVLI DTAGRLHN LM + K+ R+L+R P A L VLD T Sbjct: 176 IVYDAVAAAKARNADVLICDTAGRLHNKKNLMEELRKIYRILEREYPEAYLETLVVLDGT 235 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 TGQNAL Q + F VA G+I+TK+DGTA+GG + I IPV G Sbjct: 236 TGQNALAQAKQFAEVANVNGIILTKLDGTAKGGIAVAIQSELDIPVKIYRCG 287 >gi|307700126|ref|ZP_07637172.1| signal recognition particle-docking protein FtsY [Mobiluncus mulieris FB024-16] gi|307614675|gb|EFN93898.1| signal recognition particle-docking protein FtsY [Mobiluncus mulieris FB024-16] Length = 642 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 116/306 (37%), Positives = 177/306 (57%), Gaps = 16/306 (5%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S +R+L + A K I ++S L++ E LED L+ +D GV +++E+L Sbjct: 337 SRLRRLKERLAGKG-KFGRAILGVLSRADLEESDWEALEDELLSADFGVEATLELIEKLK 395 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFS------HRPHVI--LVVGVNGV 122 TK+ V + +V + +M+ L + N D + H + + L+VGVNG Sbjct: 396 TKQK---VIGTKSAKEVRRMAKRMIGDFLDRHANRDLNLDVPEGHEGNTVGVLIVGVNGG 452 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAAL 181 GKTT +GKL++ + V+L A DTFR+AA +QL+ W + SE +D A++ Sbjct: 453 GKTTTVGKLARFLVANRKSVVLGAADTFRAAAGEQLETWGSHVGVPVIRSEKDKADPASV 512 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 A++A K A+ DV++IDTAGRL N + LM +GK+ RV ++ P VL V+DATT Sbjct: 513 AFDAAKAARDNSADVVLIDTAGRLQNKAGLMDELGKIKRVAEKQVPIT--EVLLVIDATT 570 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL Q ++F G TG+++TK+DG+A+GG ++ + IPV +G+GEG +DL PF Sbjct: 571 GQNALSQAKIFTEAVGVTGIVLTKLDGSAKGGVVVALQRELGIPVKLVGLGEGPDDLAPF 630 Query: 302 VAKDFS 307 V DFS Sbjct: 631 VPGDFS 636 >gi|269977119|ref|ZP_06184093.1| cell division protein FtsY [Mobiluncus mulieris 28-1] gi|269934950|gb|EEZ91510.1| cell division protein FtsY [Mobiluncus mulieris 28-1] Length = 633 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 116/306 (37%), Positives = 177/306 (57%), Gaps = 16/306 (5%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S +R+L + A K I ++S L++ E LED L+ +D GV +++E+L Sbjct: 328 SRLRRLKERLAGKG-KFGRAILGVLSRADLEESDWEALEDELLSADFGVEATLELIEKLK 386 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFS------HRPHVI--LVVGVNGV 122 TK+ V + +V + +M+ L + N D + H + + L+VGVNG Sbjct: 387 TKQK---VIGTKSAKEVRRMAKRMIGDFLDRHANRDLNLDVPEGHEGNTVGVLIVGVNGG 443 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAAL 181 GKTT +GKL++ + V+L A DTFR+AA +QL+ W + SE +D A++ Sbjct: 444 GKTTTVGKLARFLVANRKSVVLGAADTFRAAAGEQLETWGSHVGVPVIRSEKDKADPASV 503 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 A++A K A+ DV++IDTAGRL N + LM +GK+ RV ++ P VL V+DATT Sbjct: 504 AFDAAKAARDNSADVVLIDTAGRLQNKAGLMDELGKIKRVAEKQVPIT--EVLLVIDATT 561 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL Q ++F G TG+++TK+DG+A+GG ++ + IPV +G+GEG +DL PF Sbjct: 562 GQNALSQAKIFTEAVGVTGIVLTKLDGSAKGGVVVALQRELGIPVKLVGLGEGPDDLAPF 621 Query: 302 VAKDFS 307 V DFS Sbjct: 622 VPGDFS 627 >gi|227875975|ref|ZP_03994098.1| signal recognition particle receptor [Mobiluncus mulieris ATCC 35243] gi|227843507|gb|EEJ53693.1| signal recognition particle receptor [Mobiluncus mulieris ATCC 35243] Length = 653 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 116/306 (37%), Positives = 177/306 (57%), Gaps = 16/306 (5%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S +R+L + A K I ++S L++ E LED L+ +D GV +++E+L Sbjct: 348 SRLRRLKERLAGKG-KFGRAILGVLSRADLEESDWEALEDELLSADFGVEATLELIEKLK 406 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFS------HRPHVI--LVVGVNGV 122 TK+ V + +V + +M+ L + N D + H + + L+VGVNG Sbjct: 407 TKQK---VIGTKSAKEVRRMAKRMIGDFLDRHANRDLNLDVPEGHEGNTVGVLIVGVNGG 463 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAAL 181 GKTT +GKL++ + V+L A DTFR+AA +QL+ W + SE +D A++ Sbjct: 464 GKTTTVGKLARFLVANRKSVVLGAADTFRAAAGEQLETWGSHVGVPVIRSEKDKADPASV 523 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 A++A K A+ DV++IDTAGRL N + LM +GK+ RV ++ P VL V+DATT Sbjct: 524 AFDAAKAARDNSADVVLIDTAGRLQNKAGLMDELGKIKRVAEKQVPIT--EVLLVIDATT 581 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL Q ++F G TG+++TK+DG+A+GG ++ + IPV +G+GEG +DL PF Sbjct: 582 GQNALSQAKIFTEAVGVTGIVLTKLDGSAKGGVVVALQRELGIPVKLVGLGEGPDDLAPF 641 Query: 302 VAKDFS 307 V DFS Sbjct: 642 VPGDFS 647 >gi|308234554|ref|ZP_07665291.1| signal recognition particle-docking protein FtsY [Atopobium vaginae DSM 15829] gi|328944152|ref|ZP_08241617.1| cell division protein FtsY [Atopobium vaginae DSM 15829] gi|327492121|gb|EGF23895.1| cell division protein FtsY [Atopobium vaginae DSM 15829] Length = 303 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 97/266 (36%), Positives = 157/266 (59%), Gaps = 15/266 (5%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF---NWD-FS 108 L+ +D+G + +I ++L +D++ Q+ +++ ++ L++ F ++D FS Sbjct: 41 LVMADVGAELTARICDDL------RDLAAQKGYTQAAQIQQALIDRLAQEFYTIDYDMFS 94 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P I+ VG+NG GKTT +GKL+ ++G ++ DTFR+AAI+QL +W R Sbjct: 95 TYPGCIVFVGINGAGKTTTVGKLAFVCKESGHSCLIGGADTFRAAAIEQLDVWGKRAGVR 154 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V E GSD A++ Y+ ++A A+ D+++IDTAGRLH + LM + K++ + R Sbjct: 155 VVTRERGSDPASICYDVLEEAAAQSTDLVLIDTAGRLHTSIDLMKELQKVV-AISRKRAS 213 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH--KIPV 286 P ++ VLDAT GQN L Q + FH G+I+TK+DGTA+GG I + ++H K+P+ Sbjct: 214 MPVKIVLVLDATCGQNGLVQAQQFHESLSLDGIIVTKLDGTAKGG--IALRISHDLKLPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITG 312 GVGE I DL+ F +F A + G Sbjct: 272 VRCGVGEQIEDLQRFDPYEFCAALVG 297 >gi|254479761|ref|ZP_05093040.1| signal recognition particle-docking protein FtsY [Carboxydibrachium pacificum DSM 12653] gi|214034301|gb|EEB75096.1| signal recognition particle-docking protein FtsY [Carboxydibrachium pacificum DSM 12653] Length = 257 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 97/219 (44%), Positives = 139/219 (63%), Gaps = 4/219 (1%) Query: 56 SDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114 +D+GV KI++ L K + K +V +++ I+++L +PF P VI Sbjct: 41 ADVGVDTTYKIIQSLKQKTKEEKIFEASKVRELLAQEIYEILQKDVEPF---VLTSPMVI 97 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 L+VGVNGVGKTT IGKL+ G VM+ A DTFR+AAIDQL++WA R + + + Sbjct: 98 LIVGVNGVGKTTTIGKLAHLYKKQGKSVMMVAADTFRAAAIDQLEVWAKRVNCPIIKHQE 157 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 GSD A++ ++ + A+A+ +DV+I DTAGRLHN LM + K+ +V+ R A Sbjct: 158 GSDPASVVFDGLQSAKARGIDVVICDTAGRLHNKKNLMEELRKIRKVIDREYSEARVETF 217 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 VLDATTGQNAL+Q ++F VA TG+I+TK+DGTA+GG Sbjct: 218 LVLDATTGQNALQQAKIFKEVADITGIILTKLDGTAKGG 256 >gi|306819256|ref|ZP_07452967.1| cell division protein FtsY [Mobiluncus mulieris ATCC 35239] gi|304648038|gb|EFM45352.1| cell division protein FtsY [Mobiluncus mulieris ATCC 35239] Length = 653 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 116/306 (37%), Positives = 177/306 (57%), Gaps = 16/306 (5%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S +R+L + A K I ++S L++ E LED L+ +D GV +++E+L Sbjct: 348 SRLRRLKERLAGKG-KFGRAILGVLSRADLEESDWEALEDELLSADFGVEATLELIEKLK 406 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFS------HRPHVI--LVVGVNGV 122 TK+ V + +V + +M+ L + N D + H + + L+VGVNG Sbjct: 407 TKQK---VIGTKSAKEVRRMAKRMIGDFLDRHANRDLNLDVPEGHEGNTVGVLIVGVNGG 463 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAAL 181 GKTT +GKL++ + V+L A DTFR+AA +QL+ W + SE +D A++ Sbjct: 464 GKTTTVGKLARFLVANRKSVVLGAADTFRAAAGEQLETWGSHVGVPVIRSEKDKADPASV 523 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 A++A K A+ DV++IDTAGRL N + LM +GK+ RV ++ P VL V+DATT Sbjct: 524 AFDAAKAARDNSADVVLIDTAGRLQNKAGLMDELGKIKRVAEKQVPIT--EVLLVIDATT 581 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL Q ++F G TG+++TK+DG+A+GG ++ + IPV +G+GEG +DL PF Sbjct: 582 GQNALSQAKIFTEAVGVTGIVLTKLDGSAKGGVVVALQRELGIPVKLVGLGEGPDDLAPF 641 Query: 302 VAKDFS 307 V DFS Sbjct: 642 VPGDFS 647 >gi|227495311|ref|ZP_03925627.1| signal recognition particle receptor [Actinomyces coleocanis DSM 15436] gi|226831181|gb|EEH63564.1| signal recognition particle receptor [Actinomyces coleocanis DSM 15436] Length = 392 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 113/283 (39%), Positives = 172/283 (60%), Gaps = 15/283 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSE 90 I+S L + EE ED L+ +D+G+ ++I+ L K+ + V+ +L +E Sbjct: 108 ILSKGDLSEADWEEFEDTLLMADLGLDATEEILGNLRKAVQVKNTTDPAEVKELLR--AE 165 Query: 91 LIHKMLMPLSKPFNWDFSH------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 L+ ++ L + N + P V+L+VGVNG GKTT +GKL++ KV+L Sbjct: 166 LLKQVNPELDRSLNLSVTETAEGKRHPAVVLMVGVNGTGKTTTVGKLARLFVAEDRKVVL 225 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 A DTFR+AA +QL W DR + V SE G+D A++A++A K+ Q + DV+++DTAG Sbjct: 226 GAADTFRAAAAEQLTTWGDRVGIETVRSEQEGADPASVAFDAVKRGQEVEADVVLVDTAG 285 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 RL N S LM +GK+ RV+++ P + VL VLDATTGQN LRQ ++F V TG+++ Sbjct: 286 RLQNKSTLMDELGKVKRVMEKRGPVS--EVLLVLDATTGQNGLRQAQVFAEVVDVTGVVL 343 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TK+DG+A+GG ++ + +PV +G+GEG +DL PF DF Sbjct: 344 TKLDGSAKGGVVVSVQRELGVPVKLVGLGEGADDLAPFNPADF 386 >gi|257461472|ref|ZP_05626568.1| signal recognition particle-docking protein FtsY [Campylobacter gracilis RM3268] gi|257441195|gb|EEV16342.1| signal recognition particle-docking protein FtsY [Campylobacter gracilis RM3268] Length = 287 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 100/287 (34%), Positives = 163/287 (56%), Gaps = 22/287 (7%) Query: 28 LKEGITDIISSRR---LDDGVREE-LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83 K+G++ I + R +D + +E LE++L+ +D+G + ++I+E+L K+ ++ Sbjct: 5 FKKGLSKTIDAMRGAKSEDKISKEILEEMLLEADVGYELVEEILEKLPAKKLVAKDDLKG 64 Query: 84 VLYDVSELIHKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139 VL + F+++ + +P V L++GVNG GKTT KL+ ++G Sbjct: 65 VLKNY--------------FDYEIAKAADEKPFVELIIGVNGAGKTTTTAKLANLYKNSG 110 Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199 V+L A DTFR+ A++QLK WA + V + G D AA+A++ A AK +D ++I Sbjct: 111 QSVILGACDTFRAGAVEQLKKWAQILNLPIVATAQGHDPAAVAFDTVSSASAKNIDRVLI 170 Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 DTAGRL N L A + K++R+ R APH + VLDAT G +++ Q F+ + Sbjct: 171 DTAGRLQNQKNLAAELEKIVRICDRAKSGAPHRKIIVLDATQGNHSVAQARAFNEIVRLD 230 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G+I+TK+DGT +GG L I ++P+ F+GVGE + DL F + F Sbjct: 231 GIIITKLDGTPKGGALFAIARELRLPILFVGVGERMEDLAEFNSDQF 277 >gi|308177252|ref|YP_003916658.1| signal recognition particle-docking protein FtsY [Arthrobacter arilaitensis Re117] gi|307744715|emb|CBT75687.1| signal recognition particle-docking protein FtsY [Arthrobacter arilaitensis Re117] Length = 393 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 117/299 (39%), Positives = 180/299 (60%), Gaps = 6/299 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S + +L ++ +G+ ++S +D+ V EE+E+ L+ +D+G A ++V+ L Sbjct: 90 SRLARLRARLTKSNNMFSKGLLALLSQDSIDEDVWEEIEENLLMADLGTEPALELVDALR 149 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH--RPHVILVVGVNGVGKTTVI 128 + + RV + E + K++ P H RP +I+VVGVNGVGKTT I Sbjct: 150 ERVKIEGSTDPARVKAMLREELLKLVDPTMDRSYLPAPHPDRPSIIMVVGVNGVGKTTTI 209 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFK 187 GKL++ + V+L A DTFR+AA +QL W DR V S+I G+D A++A+EA Sbjct: 210 GKLARVLVAEDKDVLLGAADTFRAAAAEQLATWGDRVGVPTVRSDIDGADPASVAFEAVS 269 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 ++VD+++IDTAGRL N LM +GK+ RV+++ A VL VLDATTGQN L+ Sbjct: 270 AGIDQEVDIVMIDTAGRLQNKVGLMDELGKIKRVVEK--KAAIDEVLLVLDATTGQNGLQ 327 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++F V +G+++TK+DGTA+GG ++ I +PV +G+GEG +DL PF A+DF Sbjct: 328 QAKVFSEVVNVSGIVLTKLDGTAKGGIVVAIQRQLGVPVKLVGLGEGPDDLAPFNAEDF 386 >gi|194476881|ref|YP_002049060.1| signal recognition particle-docking protein FtsY [Paulinella chromatophora] gi|171191888|gb|ACB42850.1| signal recognition particle-docking protein FtsY [Paulinella chromatophora] Length = 439 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 117/326 (35%), Positives = 188/326 (57%), Gaps = 22/326 (6%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 +++ +V + + W+ +L +G T L + +I+ L V E+LE LL+++D+G+ Sbjct: 121 LNSNQVTLDEIDWLTRLRQGLKKTRQGLVTQLLEILGDDPLTPEVVEDLETLLLQADVGI 180 Query: 61 --------AVAQKIVEELLTKRYA----KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 + Q++ EE+L KD ++++L D KML+ + Sbjct: 181 DATDQVLTVIRQRMNEEVLDPAEGLLLLKD-QLRKILEDPIIASGKMLLAPDR------- 232 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 R +V L+VGVNGVGKTT IGKL+ +G ++AA DTFR+AA++Q+K+W +R++ Sbjct: 233 ERLNVWLLVGVNGVGKTTTIGKLANLAVRSGYTALIAAADTFRAAAVEQVKVWGNRSNVP 292 Query: 169 FVCS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + + I +D A++ ++A A+AK +++++DTAGRL LM + K+ R++ RL P Sbjct: 293 IIANPSINADPASVVFDALNAAKAKGTNLVLVDTAGRLQTKHNLMEELSKVRRIIDRLAP 352 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 A L VLDAT GQN RQ F A TG+I+TK+DG++RGG + K+P+ Sbjct: 353 EANVESLLVLDATQGQNGFRQAIGFAKTAALTGIILTKLDGSSRGGMALAAASEVKLPIR 412 Query: 288 FLGVGEGINDLEPFVAKDF-SAVITG 312 F+GVGEGI DL PF + F A++ G Sbjct: 413 FIGVGEGIRDLHPFNSFTFVEALLAG 438 >gi|291299634|ref|YP_003510912.1| signal recognition particle-docking protein FtsY [Stackebrandtia nassauensis DSM 44728] gi|290568854|gb|ADD41819.1| signal recognition particle-docking protein FtsY [Stackebrandtia nassauensis DSM 44728] Length = 413 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 114/297 (38%), Positives = 172/297 (57%), Gaps = 11/297 (3%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L + ++ L G+ ++S RLDD EE+E+ L+ +D+G+ +IVE L R Sbjct: 79 RLRARLSKSNNSLGRGLLTLLSRDRLDDDAWEEIEETLLMADVGLESTNRIVERL---RE 135 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFS-----HRPHVILVVGVNGVGKTTVIG 129 V R ++ L+ + L P F+ + RP V+LVVGVNG GKTT G Sbjct: 136 RVKVLGTRTAEELRGLLSEELTAALDPSFDRALNATGDGERPAVLLVVGVNGAGKTTTCG 195 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 K+++ + G V+L A DTFR+AA DQL+ W R + V G D A++A++A K Sbjct: 196 KIARVLIADGHSVVLGAADTFRAAAADQLETWGKRVGSTVVRGPEGGDPASVAFDAVKTG 255 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + D +++DTAGRL N + LM +GK+ RV+++ P A L ++DATTGQN L Q Sbjct: 256 TEQGADSVLVDTAGRLQNKTGLMDELGKVKRVIEKQGPVA--ETLLIIDATTGQNGLEQA 313 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +F V TG+++TK+DGTA+GG +I + T +PV +G+GEG +DL PF + F Sbjct: 314 RVFTEVCQVTGVVLTKLDGTAKGGIVIAVQQTLGVPVKLIGLGEGPDDLAPFDVQQF 370 >gi|309775369|ref|ZP_07670374.1| signal recognition particle-docking protein FtsY [Erysipelotrichaceae bacterium 3_1_53] gi|308916886|gb|EFP62621.1| signal recognition particle-docking protein FtsY [Erysipelotrichaceae bacterium 3_1_53] Length = 270 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 110/254 (43%), Positives = 154/254 (60%), Gaps = 7/254 (2%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF-NWDFSHR 110 +L+ +DIG+ AQKIV+E+ + + + + ++SE + ++ L + + DF Sbjct: 3 VLLEADIGIKTAQKIVDEVENRAMDEKL---KSFDEISECLIAVMHELYTSYEDADFHKN 59 Query: 111 ---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 P VIL+VGVNG GKTT KL+K + G V+LAA DTFR+ AIDQL WADR Sbjct: 60 EDGPTVILMVGVNGSGKTTTTAKLTKLFQNEGSSVVLAAADTFRAGAIDQLAKWADRLGV 119 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + G D +A +A + A+ +D LI DTAGRL N + LM + KM RV++R P Sbjct: 120 ACIKGREGGDPSAALVDACRYAKDNGMDYLIGDTAGRLQNKANLMQELSKMRRVIEREIP 179 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 APH V VLDATTGQN + Q ++F TG+I+TKMDGTA+GG +I I +PV Sbjct: 180 GAPHEVWLVLDATTGQNGISQAQIFLETTKVTGIILTKMDGTAKGGIVIAIRDLLGLPVK 239 Query: 288 FLGVGEGINDLEPF 301 ++G+GE +DL PF Sbjct: 240 YIGLGEKEDDLRPF 253 >gi|119717494|ref|YP_924459.1| signal recognition particle-docking protein FtsY [Nocardioides sp. JS614] gi|119538155|gb|ABL82772.1| signal recognition particle-docking protein FtsY [Nocardioides sp. JS614] Length = 376 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 116/286 (40%), Positives = 168/286 (58%), Gaps = 21/286 (7%) Query: 37 SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96 S RLD+ E +ED L+ +D+GV Q++VE L T+ + V+ D ++ + L Sbjct: 102 SRDRLDEDTWESIEDTLLTADVGVGPTQELVERLRTR-----LRVEGAPEDARGVLREEL 156 Query: 97 MPLSKPFNWDFSHRPHV---------ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 + L P D R HV +LVVGVNG GKTT +GK+S+ + V+L A Sbjct: 157 LALVDP---DMDRRLHVSGLDGMPGVVLVVGVNGSGKTTTVGKISRILVAEDRSVVLGAA 213 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DTFR+AA++QL W +R D V G+D A++A+EA K+ K D +I+DTAGRL N Sbjct: 214 DTFRAAAVEQLATWGERVGVDVVRGPEGTDPASVAFEAVKEGVETKADTVIVDTAGRLQN 273 Query: 208 NSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + LM +GK+ RV+++ AP VL VLDATTGQN L Q +F V TG+++TK+ Sbjct: 274 KAGLMDELGKVKRVIEK---QAPVTEVLLVLDATTGQNGLIQARVFSEVVNVTGIVLTKL 330 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 DG+A+GG ++ + +PV +G+GEG +DL PF A F + G Sbjct: 331 DGSAKGGIVVQVQRELGVPVKLVGLGEGADDLAPFDAGAFVDALLG 376 >gi|227543205|ref|ZP_03973254.1| signal recognition particle GTPase [Corynebacterium glucuronolyticum ATCC 51866] gi|227181014|gb|EEI61986.1| signal recognition particle GTPase [Corynebacterium glucuronolyticum ATCC 51866] Length = 692 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 109/285 (38%), Positives = 169/285 (59%), Gaps = 11/285 (3%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87 + +G+ I+S+ LD+ EE+ED LI +D+G + K+V+ L K A+ V + + Sbjct: 407 IGQGVLGILSAGDLDEDAWEEIEDTLIMADLGASTTMKVVDSLREKIAARGVHNEE---E 463 Query: 88 VSELIHKMLMPLSKPF------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 ++ + L+ +P + ++P V+LVVGVNG GKTT +GKL + + G Sbjct: 464 ARAMLRETLIEAGRPELDRSIKAMPYDNKPAVVLVVGVNGTGKTTTVGKLGRVLVSMGHS 523 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 VM A DTFR+AA DQL+ W R A V + G+D A++A++A + + VDV+++DT Sbjct: 524 VMFGAADTFRAAAADQLEAWGRRVGASTVRGKEGADPASVAFDAVAKGTEQGVDVVLVDT 583 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AGRLH ++ LM +GK+ RV+++ VL VLDAT GQN + Q F V TG+ Sbjct: 584 AGRLHTSTGLMDQLGKVKRVVEKK--AKVDEVLLVLDATVGQNGIIQARTFRDVVDITGV 641 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++TK+DGTA+GG + + +PV +G+GEG +DL PF + F Sbjct: 642 VLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVESF 686 >gi|48478588|ref|YP_024294.1| signal recognition particle receptor FtsY [Picrophilus torridus DSM 9790] gi|48431236|gb|AAT44101.1| signal recognition particle receptor FtsY [Picrophilus torridus DSM 9790] Length = 315 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 90/262 (34%), Positives = 160/262 (61%), Gaps = 9/262 (3%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLT--KRYAKDVSVQRVLYDVSELIHKMLMPLS 100 D E ++++LI SD+ A++IVE L K+ ++ +S + ++ +++ +L Sbjct: 48 DEFDERVQEILIESDVSFESAERIVEMLKNREKKLSRKISYDDIKSNLRSVLYDVLSQAK 107 Query: 101 KPFNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 + + +P+VIL +G+NG GKTT IGK++ + + KV++AAGDTFR+ AI+Q+ Sbjct: 108 SDLDLLNVDKKPYVILFIGINGTGKTTTIGKIASYLKNNNKKVVIAAGDTFRAGAIEQIS 167 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 I ++T + + + GSD A++AY+A + A+A+++D ++ID+AGR+ N L++ + K+ Sbjct: 168 IIGEKTGTEVIKHDFGSDPASVAYDAIEHARARRIDYVLIDSAGRMQTNKNLLSEMKKIK 227 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 RV + P L VLD G +A+ Q + F G+++TK+D ARGG +I + Sbjct: 228 RVAR------PDLTLLVLDGMIGNDAIEQAKTFMNEINFDGVVLTKLDTDARGGAVISVA 281 Query: 280 VTHKIPVYFLGVGEGINDLEPF 301 + K P+ F+GVG+G+ND+ F Sbjct: 282 MEIKKPIMFVGVGQGLNDIMRF 303 >gi|308235260|ref|ZP_07665997.1| FtsY signal recognition particle [Gardnerella vaginalis ATCC 14018] Length = 369 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 118/312 (37%), Positives = 183/312 (58%), Gaps = 16/312 (5%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S + +L A+++ + +I+S L + +++ED L+ +D+G + ++VE L Sbjct: 66 SRVTRLRSKLANSANPFGRALFNILSKDNLSEEDWQDVEDTLLMADVGAQASDELVESL- 124 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWDFS--HRPHVILVVGVNGVGK 124 R +S DV E++ L+ + + N D S H+P VI++VGVNG GK Sbjct: 125 --RKDARISGTASAQDVREILRAKLLDIVGAKTDRSLNADSSKAHKPSVIMMVGVNGTGK 182 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAY 183 TT GKL++ M V+LAA DTFR+AA DQL+ WA+ V SE G+D A++A+ Sbjct: 183 TTTAGKLARLMVSKNRSVILAAADTFRAAAADQLETWANAVGVKIVRSEKDGADPASVAF 242 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 + +A+ DVLI+DTAGRL N + LM +GK+ RV+++ P VL VLDATTGQ Sbjct: 243 DGAAKAKESNSDVLIVDTAGRLQNKANLMDELGKIRRVIEKTVPV--DEVLLVLDATTGQ 300 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 N + Q ++F G TG+++TK+DG+A+GG ++ + +PV +G+GEG +DL PF Sbjct: 301 NGMVQAKVFAEAIGITGVVLTKLDGSAKGGIVVSVQKELGVPVKLVGLGEGPDDLAPFDP 360 Query: 304 KDFSAVITGCLD 315 + F + G LD Sbjct: 361 ESF---VDGILD 369 >gi|311113983|ref|YP_003985204.1| cell division protein FtsY [Gardnerella vaginalis ATCC 14019] gi|310945477|gb|ADP38181.1| cell division protein FtsY [Gardnerella vaginalis ATCC 14019] Length = 373 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 118/312 (37%), Positives = 183/312 (58%), Gaps = 16/312 (5%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S + +L A+++ + +I+S L + +++ED L+ +D+G + ++VE L Sbjct: 70 SRVTRLRSKLANSANPFGRALFNILSKDNLSEEDWQDVEDTLLMADVGAQASDELVESL- 128 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWDFS--HRPHVILVVGVNGVGK 124 R +S DV E++ L+ + + N D S H+P VI++VGVNG GK Sbjct: 129 --RKDARISGTASAQDVREILRAKLLDIVGAKTDRSLNADSSKAHKPSVIMMVGVNGTGK 186 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAY 183 TT GKL++ M V+LAA DTFR+AA DQL+ WA+ V SE G+D A++A+ Sbjct: 187 TTTAGKLARLMVSKNRSVILAAADTFRAAAADQLETWANAVGVKIVRSEKDGADPASVAF 246 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 + +A+ DVLI+DTAGRL N + LM +GK+ RV+++ P VL VLDATTGQ Sbjct: 247 DGAAKAKESNSDVLIVDTAGRLQNKANLMDELGKIRRVIEKTVPV--DEVLLVLDATTGQ 304 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 N + Q ++F G TG+++TK+DG+A+GG ++ + +PV +G+GEG +DL PF Sbjct: 305 NGMVQAKVFAEAIGITGVVLTKLDGSAKGGIVVSVQKELGVPVKLVGLGEGPDDLAPFDP 364 Query: 304 KDFSAVITGCLD 315 + F + G LD Sbjct: 365 ESF---VDGILD 373 >gi|227488601|ref|ZP_03918917.1| signal recognition particle GTPase [Corynebacterium glucuronolyticum ATCC 51867] gi|227091495|gb|EEI26807.1| signal recognition particle GTPase [Corynebacterium glucuronolyticum ATCC 51867] Length = 692 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 109/285 (38%), Positives = 169/285 (59%), Gaps = 11/285 (3%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87 + +G+ I+S+ LD+ EE+ED LI +D+G + K+V+ L K A+ V + + Sbjct: 407 IGQGVLGILSAGDLDEDAWEEIEDTLIMADLGASTTMKVVDSLREKIAARGVHNEE---E 463 Query: 88 VSELIHKMLMPLSKPF------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 ++ + L+ +P + ++P V+LVVGVNG GKTT +GKL + + G Sbjct: 464 ARAMLRETLIEAGRPELDRSIKAMPYDNKPAVVLVVGVNGTGKTTTVGKLGRVLVSMGHS 523 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 VM A DTFR+AA DQL+ W R A V + G+D A++A++A + + VDV+++DT Sbjct: 524 VMFGAADTFRAAAADQLEAWGRRVGASTVRGKEGADPASVAFDAVAKGTEQGVDVVLVDT 583 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AGRLH ++ LM +GK+ RV+++ VL VLDAT GQN + Q F V TG+ Sbjct: 584 AGRLHTSTGLMDQLGKVKRVVEKK--AKVDEVLLVLDATVGQNGIIQARTFRDVVDITGV 641 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++TK+DGTA+GG + + +PV +G+GEG +DL PF + F Sbjct: 642 VLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVESF 686 >gi|62185365|ref|YP_220150.1| putative cell division protein [Chlamydophila abortus S26/3] gi|62148432|emb|CAH64200.1| putative cell division protein [Chlamydophila abortus S26/3] Length = 286 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 97/265 (36%), Positives = 150/265 (56%), Gaps = 8/265 (3%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-- 96 + L + E E L +D G + +++ L R +V+ + VS L+ + L Sbjct: 15 KTLSPDLLEFTESLFYEADFGSDLTEELCSRLRKCRKPDASTVKDL---VSSLLRETLDS 71 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 +PL++P P V L++G NG GKTT + KL+ KVM+ A DTFRSA ++ Sbjct: 72 LPLAEPCQ---GPAPIVSLILGSNGSGKTTTVAKLAHYYLSRSEKVMIVATDTFRSAGMN 128 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 Q++ WA++ FV + G D AA+AY+ A ++ D ++IDT+GRLH ++ L+ + Sbjct: 129 QMRCWAEKLGCGFVSGKPGGDPAAIAYDGIASAMSRGYDRVLIDTSGRLHTHTNLLNELS 188 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 K++ V ++ P +PH L +DAT G N + QV +FH +GLI+TK+DG+A+GG L Sbjct: 189 KIVSVCNKVHPGSPHERLMTIDATLGGNVIEQVRVFHDTVPLSGLILTKVDGSAKGGTLF 248 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301 + KIP F+G GE I DLE F Sbjct: 249 RVAKQLKIPTKFVGYGELIGDLEEF 273 >gi|283769401|ref|ZP_06342300.1| signal recognition particle-docking protein FtsY [Bulleidia extructa W1219] gi|283104058|gb|EFC05442.1| signal recognition particle-docking protein FtsY [Bulleidia extructa W1219] Length = 323 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 104/279 (37%), Positives = 156/279 (55%), Gaps = 3/279 (1%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLM 97 + +DD E+L +L+ +D+G+ A I E+L K + ++ Q + + E + ++ Sbjct: 43 KGVDDAFLEQLTIILLEADVGIHTADYICEQLKMKCKEYPSITFQWAMNFLIETMQEVYE 102 Query: 98 PLS-KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 ++ P ++ S+ P V L+ GVNG GKTT KL G KV A DTFR+ AI+ Sbjct: 103 KVADTPIQFN-SNGPTVFLLEGVNGSGKTTTTAKLGYSFLKQGKKVAFTAADTFRAGAIE 161 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QLK W +R + + D +A + + A+ +VD+L+ DTAGRL N LMA + Sbjct: 162 QLKEWGNRLGIPVIAGKENGDPSAAIVDGCRYAKENQVDILLCDTAGRLQNKVNLMAELS 221 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 KM +V R APH+ VLDATTGQN L Q ++F +G+I+TKMDGTA+GG ++ Sbjct: 222 KMNKVAGREISGAPHNTWLVLDATTGQNGLSQAKIFAESTQLSGIILTKMDGTAKGGIVL 281 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I IPV +LG+GE DL PF + + I+ L+ Sbjct: 282 AIKHQLHIPVLYLGLGEKQEDLRPFDLQSYLYSISKGLE 320 >gi|225351302|ref|ZP_03742325.1| hypothetical protein BIFPSEUDO_02894 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158758|gb|EEG72000.1| hypothetical protein BIFPSEUDO_02894 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 420 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 114/281 (40%), Positives = 175/281 (62%), Gaps = 13/281 (4%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH 93 +I++ +L + E++ED L+ +D+G ++++VEEL R +S Q +V + Sbjct: 139 NILAKDQLSEADWEDVEDTLLLADVGAEASEQLVEEL---RNDARISGQSDPAEVRAALK 195 Query: 94 KMLMPL-----SKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 L+ L + N D +++P+VI++VGVNG GKTT GKLS+ + G +VML A Sbjct: 196 DKLLKLVGTDTDRRLNADKEGANKPNVIIMVGVNGTGKTTTAGKLSRLLVSEGKQVMLGA 255 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 DTFR+AA DQL+ W + V S+ G+D A++A+EA +A+ + VDVLIIDTAGRL Sbjct: 256 ADTFRAAAADQLETWGAKVGVPVVRSDKDGADPASVAFEASAKAKEENVDVLIIDTAGRL 315 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 N + LM +GK+ RV ++ P VL VLDATTGQN + Q ++F G TG++++K Sbjct: 316 QNKANLMDELGKIRRVTEKNLPV--DEVLLVLDATTGQNGMTQAKVFAEAIGITGVVLSK 373 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +DG+A+GG +I + +PV +G+GEG +DL PF + F Sbjct: 374 LDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAPFDPEGF 414 >gi|284929430|ref|YP_003421952.1| signal recognition particle-docking protein FtsY [cyanobacterium UCYN-A] gi|284809874|gb|ADB95571.1| signal recognition particle-docking protein FtsY [cyanobacterium UCYN-A] Length = 435 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 107/309 (34%), Positives = 180/309 (58%), Gaps = 6/309 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + + + + W++ L KG + T L + ++ L + E+E +L+++DIG+ Sbjct: 120 EDITEDEIQWLKSLHKGLSKTRRGLLNQLKLVLGQGPLSENAILEIETILLQADIGINAT 179 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVI---LVVGV 119 IV L K + + ++ + + ++ +L PL + ++ + + V+ L+ GV Sbjct: 180 DYIVTTLQNKLLEESLPSEKAIEYLKTILCDILNSPLKQAYDSEILVKKEVLNIWLLTGV 239 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SEIGSDA 178 NG GKTT IGKL+ G ++AA DTFR+AA++Q+KIW ++T+ + S +D Sbjct: 240 NGAGKTTTIGKLAYLAQQCGHSCIIAAADTFRAAAVEQVKIWGEKTNTPIISNSGKNTDP 299 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH-SVLQVL 237 AA+ Y+ AQA+ VD+L++DTAGRL N + LM + K+ RV+ + + H L V+ Sbjct: 300 AAVVYDGLMAAQARNVDLLLVDTAGRLQNKTNLMEELAKIRRVIDKKAKNNVHIESLLVI 359 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DAT GQN LRQ E+F A TG+I+TK+DG+++GG + I +P+ F+GVGE + D Sbjct: 360 DATLGQNGLRQTELFSEAAHLTGVILTKLDGSSKGGIALAITQQFGLPIRFIGVGENMKD 419 Query: 298 LEPFVAKDF 306 L+PF + +F Sbjct: 420 LKPFSSHEF 428 >gi|84498332|ref|ZP_00997129.1| putative prokaryotic docking protein [Janibacter sp. HTCC2649] gi|84381832|gb|EAP97715.1| putative prokaryotic docking protein [Janibacter sp. HTCC2649] Length = 405 Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 117/272 (43%), Positives = 170/272 (62%), Gaps = 10/272 (3%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYDVSELIHKML 96 LD+ E++ED L+ +D+GV ++V+ L TK A + +V+ L + ELI + Sbjct: 132 LDEQAWEDVEDTLLTADLGVEATTELVDALRTKVRVHGTADEATVRGWLRE--ELIALVD 189 Query: 97 MPLSKPF-NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 + + + RP VI+VVGVNG GKTT +GKL++ + V+L A DTFR+AA Sbjct: 190 PSMDRSIASSRVDGRPAVIVVVGVNGTGKTTTVGKLARVLVAEDKDVVLGAADTFRAAAA 249 Query: 156 DQLKIWADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 DQL+ W +R + S+ G+D AA+A++A K A + DV+IIDTAGRLHN LM Sbjct: 250 DQLQTWGERVGVPTIRSDRDGADPAAVAFDAVKGAAELESDVVIIDTAGRLHNKVGLMDE 309 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 +GK+ RV+++ P VL VLDATTGQN LRQ E+F V G TG+++TK+DGTA+GG Sbjct: 310 LGKVKRVIEKQSPI--DEVLLVLDATTGQNGLRQAEVFSEVVGITGIVLTKLDGTAKGGI 367 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++ + +PV +G+GEG +DL PF + F Sbjct: 368 VVAVQRKLGVPVKLIGLGEGPDDLAPFDPEGF 399 >gi|325067019|ref|ZP_08125692.1| signal recognition particle-docking protein FtsY [Actinomyces oris K20] Length = 317 Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 110/277 (39%), Positives = 169/277 (61%), Gaps = 13/277 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFN 104 EE+ED L+ SD+G+ V +++EL T+ S + V +EL+ + L + N Sbjct: 43 EEIEDTLLTSDLGIEVTTSLMDELRTQAKVLGTSDPEAVRTVLRAELLKLVDPSLDRSLN 102 Query: 105 WD-------FSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 + +P IL+VGVNG GKTT GKL++ + V+L A DTFR+AA + Sbjct: 103 LERPTPAEGAQGKPAAAILMVGVNGTGKTTTCGKLARVLVAQDKTVVLGAADTFRAAAAE 162 Query: 157 QLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 QL W +R D V SE G+D A++AY+A ++A A++ DV+++DTAGRL N + LM + Sbjct: 163 QLSTWGERVGVDVVRSEKEGADPASVAYDAAREASAQEADVVVVDTAGRLQNKAGLMDEL 222 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 GK+ RV++++ P +L VLDATTGQN +RQ ++F G TG+++TK+DGTA+GG + Sbjct: 223 GKIKRVMEKIAPVG--EILLVLDATTGQNGMRQAQVFSEAVGVTGIVLTKLDGTAKGGIV 280 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + + +PV +G+GEG +DL PF + F + G Sbjct: 281 VTVQKELGVPVKLVGLGEGADDLAPFDPEGFVDALLG 317 >gi|315104270|gb|EFT76246.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL050PA2] Length = 396 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 115/293 (39%), Positives = 177/293 (60%), Gaps = 14/293 (4%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87 L G+ +++S+ +LDD ++ E LI SD+GV ++VE+L ++ +S Sbjct: 105 LARGLAELLSADKLDDDAWDDFETTLITSDLGVGRTTELVEKLRSELAIDGISDS---AH 161 Query: 88 VSELIHKMLMPLSKP-----FNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 E++H L+ L P N D +P V+L+VGVNG GKTT GKL++ + G Sbjct: 162 AREVLHHELVELVGPDMDRSINLDRPEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEGKT 221 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 V+L A DTFR+AA +QL+ W +R V + G+D A++AYEA + VDV+++DT Sbjct: 222 VLLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQAGIDDGVDVVLVDT 281 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AGRLH + LM +GK+ RV+++ P + VL VLDATTGQN L Q +F V TG+ Sbjct: 282 AGRLHTKAGLMDELGKVKRVIEKFAPVS--EVLLVLDATTGQNGLTQACIFSEVVDVTGI 339 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 +++K+DG+A+GG ++ + +PV +G+GEG +DL PF A +F +TG + Sbjct: 340 VLSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNF---VTGLM 389 >gi|282899368|ref|ZP_06307336.1| Cell division transporter substrate-binding protein FtsY [Cylindrospermopsis raciborskii CS-505] gi|281195735|gb|EFA70664.1| Cell division transporter substrate-binding protein FtsY [Cylindrospermopsis raciborskii CS-505] Length = 497 Score = 175 bits (444), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 103/308 (33%), Positives = 179/308 (58%), Gaps = 5/308 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + ++ E ++W++KL +G T + + I+ L+ E+E +L+++D+GV Sbjct: 184 EDISIEEITWLKKLRQGLDKTRRNILNQLKAIVGQGPLNQDAVAEIEGILLQADVGVEAT 243 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPH---VILVVGV 119 I++ L K + + ++ + + +++ ML PL F+ + L+ GV Sbjct: 244 DLIIQSLQKKLRDEVTAPEQAIAYLKQILRDMLEKPLESSPRSGFAPEKDKLTIWLITGV 303 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178 NG GKTT IGK++ +G ++AA DTFR+AA++Q+K+W R+ + + + +D Sbjct: 304 NGAGKTTTIGKIAHLAQKSGYNCLIAAADTFRAAAVEQVKVWGSRSGVEVIANPGKNTDP 363 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A AQ++K ++L++DTAGRL N LM + K+ R++ + A L VLD Sbjct: 364 AAIVFDAIAAAQSRKTELLLVDTAGRLQNKKNLMDELSKIRRIIDKKAADARVESLLVLD 423 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 +T GQN LRQ E+F A +G+++TK+DGTA+GG + +V +P+ F+G GEGI DL Sbjct: 424 STLGQNGLRQAEVFSQAAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGAGEGIEDL 483 Query: 299 EPFVAKDF 306 PF + +F Sbjct: 484 RPFSSYEF 491 >gi|256824941|ref|YP_003148901.1| signal recognition particle-docking protein FtsY [Kytococcus sedentarius DSM 20547] gi|256688334|gb|ACV06136.1| signal recognition particle-docking protein FtsY [Kytococcus sedentarius DSM 20547] Length = 480 Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 109/276 (39%), Positives = 171/276 (61%), Gaps = 6/276 (2%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL--YDVSELI 92 +++S LD+ EE+ED L+ SD+GV ++V+ L + ++ + ++ + EL+ Sbjct: 201 LLTSGDLDEAAWEEVEDTLLASDLGVEATTELVDNLRKRVQVENTTDPELVRGWLREELV 260 Query: 93 HKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 + + + + RP V+LVVGVNG GKTT +GK+++ + V+L A DTFR Sbjct: 261 RLVDPTMERGIAATRQNGRPSVVLVVGVNGTGKTTTVGKIARVLVAEDKDVVLGAADTFR 320 Query: 152 SAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 +AA DQL+ W +R V SE G+D A++A++A ++ + DV+++DTAGRLHN + Sbjct: 321 AAAADQLQTWGERVGVRTVRSEKEGADPASVAFDAVREGLESEADVVLLDTAGRLHNKAG 380 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + K+ RV+++ VL VLDATTGQN ++Q E+F TG+++TKMDGTA Sbjct: 381 LMDELAKVKRVVEKR--SQIDEVLLVLDATTGQNGMKQAEVFSQAVDVTGIVLTKMDGTA 438 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 RGG ++ + +PV +G+GEG +DL PFVA DF Sbjct: 439 RGGIVVAVQRALGVPVKLVGLGEGADDLAPFVATDF 474 >gi|89898035|ref|YP_515145.1| cell division related signal recognition particle GTPase [Chlamydophila felis Fe/C-56] gi|89331407|dbj|BAE81000.1| cell division related signal recognition particle GTPase [Chlamydophila felis Fe/C-56] Length = 285 Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 97/255 (38%), Positives = 144/255 (56%), Gaps = 5/255 (1%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 E E L +D G + +++ L R + +V+ + VS L+ + L L P Sbjct: 23 EFTESLFYEADFGSELTEELCSRLRKCRKPDESTVKDL---VSSLLRETLANL--PIIKS 77 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P V L++G NG GKTT + KL+ KVM+ A DTFRSA +DQ++ WA++ Sbjct: 78 EKDTPVVSLMLGTNGSGKTTTVAKLAHYYLSRSEKVMIVATDTFRSAGMDQMRCWAEKLG 137 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 FV + G D AA+AY+ A+++ D +IIDT+GRLH ++ L+ + K++ V ++ Sbjct: 138 CGFVSGKPGGDPAAIAYDGIASAKSRGYDRVIIDTSGRLHTHTNLLNELSKIVSVCNKVH 197 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 +PH L +DAT G N + QV +FH +GLI+TK+DG+A+GG L I KIP Sbjct: 198 AGSPHERLMTIDATLGGNVIEQVRVFHETIPLSGLILTKVDGSAKGGTLFRIAKQLKIPT 257 Query: 287 YFLGVGEGINDLEPF 301 F+G GE I DLE F Sbjct: 258 KFVGYGELIGDLEEF 272 >gi|57242523|ref|ZP_00370461.1| signal recognition particle-docking protein FtsY [Campylobacter upsaliensis RM3195] gi|57016808|gb|EAL53591.1| signal recognition particle-docking protein FtsY [Campylobacter upsaliensis RM3195] Length = 288 Score = 175 bits (444), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 100/288 (34%), Positives = 164/288 (56%), Gaps = 17/288 (5%) Query: 21 FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80 F T K E IT ++ ++ ++ LE++L+ +D+ + ++I+ L K Sbjct: 5 FKKTLAKTLENITKTKANHKIS---KDLLEEILLEADVAYEIVEEIIYYLPPTDEVKKAD 61 Query: 81 VQRVL--YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138 ++RV+ Y + E P S + +P V L++GVNG GKTT I KL+ Sbjct: 62 LKRVMGAYFLYE------NPESS------TQKPFVELILGVNGAGKTTSIAKLANLYKKQ 109 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 G KV+L A DTFR+ AI+QL++WA++ V S G D +A+A++ +A+AK D +I Sbjct: 110 GQKVILGACDTFRAGAIEQLRLWAEKIGVQIVLSNQGHDPSAVAFDTISKAKAKDFDRVI 169 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +DTAGRL N L + K++R+ ++ +APH + VLD T G + Q + F+ + Sbjct: 170 LDTAGRLQNQKNLANELEKIVRICEKAMTNAPHRKILVLDGTQGNAGILQAKAFNELIKL 229 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G+I+TK+DGTA+GG L I ++P++++GVGE ++DL F A + Sbjct: 230 DGVIITKLDGTAKGGALFSIARELEMPIFYVGVGEKMDDLYEFDANAY 277 >gi|152990801|ref|YP_001356523.1| signal recognition particle receptor FtsY [Nitratiruptor sp. SB155-2] gi|151422662|dbj|BAF70166.1| signal recognition particle receptor FtsY [Nitratiruptor sp. SB155-2] Length = 286 Score = 175 bits (444), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 84/197 (42%), Positives = 127/197 (64%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P V L++GVNG GKTT I KL+ + G V+L A DTFR+AAI+QL WAD+ Sbjct: 80 KPFVELILGVNGAGKTTTIAKLAYRYKREGKSVILGAADTFRAAAIEQLTKWADKLDVPI 139 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V ++ G D +A+AY+ ++A++K +D ++IDTAGRLH S L + K++R+ + A Sbjct: 140 VATKQGHDPSAVAYDTIQKAKSKGIDHVLIDTAGRLHTQSNLAEELKKIVRICGKAMEGA 199 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH L +LD T G +A+ Q + FH + G G+I+TK+DGTA+GG L+ I +P+ ++ Sbjct: 200 PHRKLLILDGTQGNSAIHQAKAFHEMVGVDGIIVTKLDGTAKGGALLSISHEMGLPILYV 259 Query: 290 GVGEGINDLEPFVAKDF 306 G GE + DL PF ++ Sbjct: 260 GTGEKMEDLAPFDPNEY 276 >gi|322379443|ref|ZP_08053813.1| Signal recognition particle receptor [Helicobacter suis HS1] gi|322380946|ref|ZP_08055012.1| cell division protein FtsY [Helicobacter suis HS5] gi|321146618|gb|EFX41452.1| cell division protein FtsY [Helicobacter suis HS5] gi|321148152|gb|EFX42682.1| Signal recognition particle receptor [Helicobacter suis HS1] Length = 293 Score = 175 bits (443), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 98/263 (37%), Positives = 157/263 (59%), Gaps = 10/263 (3%) Query: 46 REELEDLLIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103 +E +E++LI D+ + +K++E L KR +V++ R L S L P+ Sbjct: 26 KESIEEILIGFDVQYDLVEKLLEHLPEQIKRNHLEVALMRFLRKESYYDKVSLKPIE--- 82 Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 +P V L++GVNG GKTT I KL+KK G KV+L AGDTFR+AA+ QL++W + Sbjct: 83 -----SKPLVSLILGVNGAGKTTTIAKLAKKYLLNGQKVILGAGDTFRAAAVKQLQLWGE 137 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + + + + SD +ALAY + A+ +D +IIDTAGRLHN + L + K+ +V Sbjct: 138 KLQLEVISAGQNSDPSALAYNTIEAGTARGMDQIIIDTAGRLHNQTNLKNELLKISKVCS 197 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 + AP+ + +LD T G +AL Q ++FH G+I+TK+DGT++GG ++ I+ + Sbjct: 198 KALKGAPYYKILILDGTQGSSALEQAKIFHESLELDGVIVTKLDGTSKGGCILSILYELQ 257 Query: 284 IPVYFLGVGEGINDLEPFVAKDF 306 +P+ +LGVGE +DL F +++ Sbjct: 258 LPILYLGVGEKEDDLIVFEEREY 280 >gi|320528387|ref|ZP_08029549.1| signal recognition particle-docking protein FtsY [Solobacterium moorei F0204] gi|320131301|gb|EFW23869.1| signal recognition particle-docking protein FtsY [Solobacterium moorei F0204] Length = 323 Score = 175 bits (443), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 104/276 (37%), Positives = 151/276 (54%), Gaps = 25/276 (9%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---------LTKRYAKD--VSVQRVLYD 87 + +DD E+L +L+ SD+G+ A I E++ +T ++A + + + +Y+ Sbjct: 43 KGVDDDFLEQLTIILLESDVGIETADYICEQMKLKCSEYPSITFKWAMNFLLETMKEIYE 102 Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 + KP +++ + V L+ GVNG GKTT KL++ D G V A Sbjct: 103 ATP---------DKPISFN-ENGTTVFLLEGVNGSGKTTTSAKLARMFLDQGKSVAFTAA 152 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DTFR+ AIDQL W +R + D +A + + A +D+L+ DTAGRL N Sbjct: 153 DTFRAGAIDQLAKWGERLGVPCIKGIENGDPSAAIVDGCRYAIENNIDILLCDTAGRLQN 212 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + LM + KM RV + P APH+ VLDATTGQN L Q ++F +G+I+TKMD Sbjct: 213 KANLMNELSKMNRVAAKEIPGAPHNTWLVLDATTGQNGLSQAQIFAEATNLSGIILTKMD 272 Query: 268 GTARGGGLIPIVVTHK--IPVYFLGVGEGINDLEPF 301 GTA+GG I I + HK IPVY+LG+GE DL PF Sbjct: 273 GTAKGG--IVIAIKHKLHIPVYYLGLGEQPKDLRPF 306 >gi|212715269|ref|ZP_03323397.1| hypothetical protein BIFCAT_00161 [Bifidobacterium catenulatum DSM 16992] gi|212661950|gb|EEB22525.1| hypothetical protein BIFCAT_00161 [Bifidobacterium catenulatum DSM 16992] Length = 420 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 113/281 (40%), Positives = 174/281 (61%), Gaps = 13/281 (4%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH 93 +I++ +L + E++ED L+ +D+G ++++VEEL R ++ Q +V + Sbjct: 139 NILAKDQLSEADWEDVEDTLLLADVGAEASEQLVEEL---RNDARIAGQSDPAEVRAALK 195 Query: 94 KMLMPL-----SKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 L+ L + N D +++P VI++VGVNG GKTT GKLS+ + G +VML A Sbjct: 196 DKLLKLVGTDTDRRLNADKEGANKPSVIIMVGVNGTGKTTTAGKLSRLLVSEGKQVMLGA 255 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 DTFR+AA DQL+ W + V S+ G+D A++A+EA +A+ + VDVLIIDTAGRL Sbjct: 256 ADTFRAAAADQLETWGAKVGVPVVRSDKDGADPASVAFEASAKAKEENVDVLIIDTAGRL 315 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 N + LM +GK+ RV ++ P VL VLDATTGQN + Q ++F G TG++++K Sbjct: 316 QNKANLMDELGKIRRVTEKNLPV--DEVLLVLDATTGQNGMTQAKVFAEAIGITGVVLSK 373 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +DG+A+GG +I + +PV +G+GEG +DL PF + F Sbjct: 374 LDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAPFDPEGF 414 >gi|282891426|ref|ZP_06299925.1| cell division protein FtsY [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498711|gb|EFB41031.1| cell division protein FtsY [Parachlamydia acanthamoebae str. Hall's coccus] Length = 309 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 109/275 (39%), Positives = 169/275 (61%), Gaps = 8/275 (2%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEEL--LTKRYAK---DVSVQRVLYDVSELIHKM 95 +DD +LE LL +D+GV A ++ E++ L+++ + D + V ++ +++++ Sbjct: 36 IDDETWGKLEQLLYEADLGVQTAIELTEKVKKLSQQNSSLKGDELLSSVRTEILQVLNQH 95 Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 PL + S P VIL+VGVNG GKTT KL+K G KV++AA DTFR+AA+ Sbjct: 96 ASPLRE---ISSSSEPLVILIVGVNGNGKTTSTAKLAKFFQSQGKKVLVAAADTFRAAAV 152 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 +QL +WA + D V SD AA+ ++A A+A++ +V+I+DTAGRL LM + Sbjct: 153 EQLDVWAQKLGIDIVKGAPKSDPAAVVFDALSAAKARQAEVVIVDTAGRLQTKIDLMQEL 212 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 K+ R K+ +P +P L VLDATTGQN + Q ++F+ TGLI+TK+DGT++GG + Sbjct: 213 EKIKRSCKKFNPESPQETLLVLDATTGQNGIDQAKVFNRYTPITGLILTKLDGTSKGGIV 272 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 + I IPV +G+GEGI+DLE F + F+ + Sbjct: 273 VNIHKQLGIPVKLIGIGEGIDDLELFDPEKFTNAL 307 >gi|159036831|ref|YP_001536084.1| signal recognition particle-docking protein FtsY [Salinispora arenicola CNS-205] gi|157915666|gb|ABV97093.1| signal recognition particle-docking protein FtsY [Salinispora arenicola CNS-205] Length = 395 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 117/295 (39%), Positives = 172/295 (58%), Gaps = 9/295 (3%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY---AKDVSVQRVLY 86 +G+ ++S RLD+ EE+ED LI +D+G+ ++IV+ L + + V+ R L Sbjct: 104 KGLLGLLSRDRLDEDTWEEIEDSLITADVGIDSTREIVDRLRERTRVLGTRTVTELRALL 163 Query: 87 DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 +EL++ + L + N P V+LVVGVNG GKTT GK+++ + G V+L Sbjct: 164 -ATELVNALDPELDRALNTAPKDGVPAVLLVVGVNGAGKTTTCGKVARVLVADGRSVILG 222 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 A DTFR+AA DQL+ WA R A+ V G+D A++A++A K+ VD ++IDTAGRL Sbjct: 223 AADTFRAAAADQLETWAGRVGAETVRGPEGADPASVAFDAVKRGIETGVDTVLIDTAGRL 282 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 N LM +GK+ RV+++ H P L +LDATTGQN L Q +F TG+ +T Sbjct: 283 QNKVGLMDELGKVKRVVEK---HGPIDETLLILDATTGQNGLEQARVFTEAVDVTGVALT 339 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEE 319 K+DGTA+GG +I + IPV +G+GEG +DL PF F + G G + Sbjct: 340 KLDGTAKGGIVIAVQRKLGIPVKLVGLGEGKDDLAPFDPAQFVDALLGAEATGPD 394 >gi|148238347|ref|YP_001223734.1| Signal recognition particle GTPase, FtsY [Synechococcus sp. WH 7803] gi|147846886|emb|CAK22437.1| Signal recognition particle GTPase, FtsY [Synechococcus sp. WH 7803] Length = 488 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 111/308 (36%), Positives = 174/308 (56%), Gaps = 5/308 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++V E + W+ +L +G T G+ + + L V ++LE LL+R+D GV Sbjct: 173 EQVTLEEIDWLGRLRQGLEKTRQGFVSGLLENLGDDPLTPEVLDDLESLLLRADAGVKAT 232 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGV 119 ++++ L + + V + + E + +L K D + +V L+VGV Sbjct: 233 DQVLDALRKRMNEQVVDPSEGIRFLKEQLRDLLEAPIKSSGVDLLAPQRGQLNVWLMVGV 292 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDA 178 NGVGKTT +GKL+ +G M+AA DTFR+AA+ Q+++W DR+ V + +D Sbjct: 293 NGVGKTTTLGKLANLAVRSGYSAMIAAADTFRAAAVQQVQVWGDRSDVPVVANPSDNADP 352 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A A++K D++++DTAGRL LM + K+ RV+ RL P A L VLD Sbjct: 353 AAVVFDAIGAARSKGTDLVLVDTAGRLQTKHNLMEELNKIRRVVDRLAPDATVESLLVLD 412 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A+ GQN L+Q F AG TG+++TK+DGTARGG + + +P+ F+G GEGI DL Sbjct: 413 ASQGQNGLKQAMAFARAAGLTGVVITKLDGTARGGVALAVASEAGLPIRFIGAGEGIRDL 472 Query: 299 EPFVAKDF 306 PF + +F Sbjct: 473 RPFNSFEF 480 >gi|296129311|ref|YP_003636561.1| signal recognition particle-docking protein FtsY [Cellulomonas flavigena DSM 20109] gi|296021126|gb|ADG74362.1| signal recognition particle-docking protein FtsY [Cellulomonas flavigena DSM 20109] Length = 399 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 113/279 (40%), Positives = 169/279 (60%), Gaps = 18/279 (6%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTK---------RYAKDVSVQRVLYDVSELIHKMLM 97 +ELE+ L+ +D+G ++++ L T+ A+ V +++L V + + L Sbjct: 126 DELEETLLLADVGAGPTDELIDALRTRVRVDGLRDGEQARAVLREQLLALVDPSLDRTLA 185 Query: 98 PLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 ++P + R P V+LVVGVNG GKTT +GKL++ + G +V+L A DTFR+AA D Sbjct: 186 --TEPTTAEDGQRLPAVVLVVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAAD 243 Query: 157 QLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 QL+ W R V S+ G+D AA+A++A + A DV+++DTAGRL N + LM + Sbjct: 244 QLQTWGSRVGVPTVRSDRDGADPAAVAFDAVRTGVADGADVVLVDTAGRLQNKAGLMDEL 303 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 GK+ RV+ R P + VL VLDATTGQN L Q +F VAG TG+++TK+DGTA+GG + Sbjct: 304 GKITRVITRTAPLS--EVLLVLDATTGQNGLNQARVFGEVAGVTGIVLTKLDGTAKGGIV 361 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 + + +PV +G+GEG +DL PF D A + G L Sbjct: 362 VAVQRELGVPVKLVGLGEGPDDLAPF---DPEAFVDGLL 397 >gi|309810309|ref|ZP_07704147.1| signal recognition particle-docking protein FtsY [Dermacoccus sp. Ellin185] gi|308435737|gb|EFP59531.1| signal recognition particle-docking protein FtsY [Dermacoccus sp. Ellin185] Length = 422 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 116/282 (41%), Positives = 166/282 (58%), Gaps = 17/282 (6%) Query: 42 DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101 DD E++ED L+++D+GV +IV+ L + + + VS +H+ L+ Sbjct: 150 DDEAWEDVEDTLLQADLGVEATTQIVDNLKRRIAVHGATDEET---VSGWLHEELLAQVG 206 Query: 102 PFNWD-------FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 P + D RP V+LVVGVNG GKTT +GKL++ + V+L A DTFR+AA Sbjct: 207 P-DMDRRIAASRVGDRPAVVLVVGVNGTGKTTTVGKLARVLVAEDKDVILGAADTFRAAA 265 Query: 155 IDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 DQL+ W R V SE G+D AA+A++A K Q + DV+++DTAGRLHN LM Sbjct: 266 ADQLETWGARVGVPTVRSEKEGADPAAVAFDAVKAGQENECDVVLLDTAGRLHNKVGLMD 325 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + KM RV+++ P VL VLDATTGQN +RQ E+F TG+++TK+DGTA+GG Sbjct: 326 ELAKMKRVIEKRSPI--DEVLLVLDATTGQNGMRQAEVFGQAVDVTGVVLTKLDGTAKGG 383 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ++ + +PV +G+GEG +DL PF D A + LD Sbjct: 384 IVVNVQRELGVPVKLVGLGEGPDDLAPF---DPEAYVNAVLD 422 >gi|154486490|ref|ZP_02027897.1| hypothetical protein BIFADO_00305 [Bifidobacterium adolescentis L2-32] gi|154084353|gb|EDN83398.1| hypothetical protein BIFADO_00305 [Bifidobacterium adolescentis L2-32] Length = 424 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 112/281 (39%), Positives = 172/281 (61%), Gaps = 13/281 (4%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH 93 +I++ +L + E++ED L+ +D+G ++++VEEL R ++ Q +V + Sbjct: 143 NILAKDQLSEADWEDVEDTLLLADVGAEASEQLVEEL---RNDARIAGQSDPAEVRAALK 199 Query: 94 KMLMPLSK-------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 L+ L N + +++P VI++VGVNG GKTT GKLS+ + G +VML A Sbjct: 200 DKLLKLVGIDTDRRLNANKEGANKPSVIIMVGVNGTGKTTTAGKLSRLLVSEGKQVMLGA 259 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 DTFR+AA DQL+ W + V S+ G+D A++A+EA +A+ + DVLIIDTAGRL Sbjct: 260 ADTFRAAAADQLETWGAKVGVPVVRSDKDGADPASVAFEASAKAKEENADVLIIDTAGRL 319 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 N S LM +GK+ RV ++ P VL VLDATTGQN + Q ++F G TG++++K Sbjct: 320 QNKSNLMDELGKIRRVTEKNLPV--DEVLLVLDATTGQNGMTQAKVFAEAIGITGVVLSK 377 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +DG+A+GG +I + +PV +G+GEG +DL PF + F Sbjct: 378 LDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAPFDPEGF 418 >gi|297626602|ref|YP_003688365.1| Signal recognition particle receptor [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922367|emb|CBL56939.1| Signal recognition particle receptor [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 384 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 110/284 (38%), Positives = 168/284 (59%), Gaps = 9/284 (3%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----LTKRYAKDVSVQR 83 L + D++S ++DD ++ E LI SD+GV A ++VE L A + ++ Sbjct: 98 LARALADLLSVDKIDDETWDDFESTLIASDLGVGPATELVENLRKALAVGGVADPAAARK 157 Query: 84 VLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 L ELI + +S+ N D + P V+++VGVNG GKTT +GKL + + G V Sbjct: 158 ALR--GELIKIVGPDMSRDLNLDHAESVPAVVMMVGVNGTGKTTTVGKLGRMLVAQGRTV 215 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 + A DTFR+AA +QL W +R V + G+D A++A+ A + + VDV+++DTA Sbjct: 216 LFGAADTFRAAAAEQLTTWGERVGVRTVRGDEGADPASVAFNAVDEGITEGVDVVLVDTA 275 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRLH LM +GK+ RV+++ P + VL V+DATTGQN L Q +F V TG++ Sbjct: 276 GRLHTKVGLMDELGKVKRVIEKKAPV--NEVLLVIDATTGQNGLTQARIFAEVVDITGIV 333 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +TK+DG+A+GG ++ + +PV F+G+GEG +DL PF A F Sbjct: 334 LTKLDGSAKGGIVVQVQRELGVPVKFIGLGEGPDDLAPFDAAQF 377 >gi|113955324|ref|YP_729250.1| signal recognition particle-docking protein FtsY [Synechococcus sp. CC9311] gi|113882675|gb|ABI47633.1| signal recognition particle-docking protein FtsY [Synechococcus sp. CC9311] Length = 551 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 112/313 (35%), Positives = 176/313 (56%), Gaps = 11/313 (3%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 S ++V E + W+ +L +G T G+ + + L V ++LE LL+R+D GV Sbjct: 234 SAEQVTLEEIDWLGRLRQGLEKTRQGFVTGLLENLGDDPLTPEVLDDLESLLLRADAGVQ 293 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF-------SHRPHVI 114 ++++ L + + V + + E + +L +P R +V Sbjct: 294 ATDQVLDALRQRMNEQVVDPSEGIRFLKEQLRDLL---DEPIKSSAVEVLAPQRDRLNVW 350 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE- 173 L+VGVNGVGKTT +GKL+ +G ++AA DTFR+AA+ Q+++W DR+ V + Sbjct: 351 LLVGVNGVGKTTTLGKLANLAVRSGYSALIAAADTFRAAAVQQVQVWGDRSDVPVVANPS 410 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +D AA+ ++A A++K D++++DTAGRL LM + K+ RV+ RL P A Sbjct: 411 ANADPAAVVFDAIGAARSKGTDLVLVDTAGRLQTKHNLMEELEKIRRVVDRLAPEAHVES 470 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L VLDA+ GQN L+Q F AG TG+++TK+DGTARGG + + K+P+ F+G GE Sbjct: 471 LLVLDASQGQNGLKQAMAFARAAGLTGVVITKLDGTARGGVALAVASEAKLPIRFIGAGE 530 Query: 294 GINDLEPFVAKDF 306 GI DL PF + +F Sbjct: 531 GIRDLRPFNSFEF 543 >gi|317125424|ref|YP_004099536.1| signal recognition particle-docking protein FtsY [Intrasporangium calvum DSM 43043] gi|315589512|gb|ADU48809.1| signal recognition particle-docking protein FtsY [Intrasporangium calvum DSM 43043] Length = 423 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 114/272 (41%), Positives = 164/272 (60%), Gaps = 12/272 (4%) Query: 42 DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101 D+ E++ED LI SD+GV ++++ L T+ + + V E + + L+ L + Sbjct: 151 DEEAWEDVEDTLIASDLGVEATEELIASLRTRVKVDGTTDEAT---VREWLREDLLRLVQ 207 Query: 102 P------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 P + RP VILVVGVNG GKTT +GKL++ + V+L A DTFR+AA Sbjct: 208 PDMDRRIASSRVGTRPAVILVVGVNGTGKTTTVGKLARVLVAEDRDVLLGAADTFRAAAA 267 Query: 156 DQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 DQL W R V S+ G+D AA+A++A K ++VDV+IIDTAGRLHN LM Sbjct: 268 DQLDTWGARVGVPTVRSDREGADPAAVAFDAVKAGIEQEVDVVIIDTAGRLHNKVDLMNE 327 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 +GK+ RV+++L VL VLDATTGQN L+Q ++F TG+++TK+DGTA+GG Sbjct: 328 LGKVKRVIEKL--SEIDEVLLVLDATTGQNGLQQAKVFSEAVDVTGIVLTKLDGTAKGGI 385 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++ + +PV +G+GEG +DL PF DF Sbjct: 386 VVAVQRQLGVPVKLVGLGEGPDDLAPFEPADF 417 >gi|298244305|ref|ZP_06968111.1| signal recognition particle-docking protein FtsY [Ktedonobacter racemifer DSM 44963] gi|297551786|gb|EFH85651.1| signal recognition particle-docking protein FtsY [Ktedonobacter racemifer DSM 44963] Length = 337 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 114/313 (36%), Positives = 179/313 (57%), Gaps = 19/313 (6%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++ + + ++ + + F+ S ++E TD+I+ DD LE+ L+ +D+G + Sbjct: 34 EQQSPQRFGFLNRTRQLFSRMSEVVEE--TDLITDEMWDD-----LEESLLAADVGPSTT 86 Query: 64 QKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH--VILVV 117 ++E L + + + VQR L + +++M L P S R VILV+ Sbjct: 87 IWLIERLRQRAENEHMRTGAQVQRALRE------ELVMLLGDPSPLRLSQRSPLTVILVI 140 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 GVNG GKTT I K++ ++S G +V+LAA DTFR+AAIDQLK W R S + + +D Sbjct: 141 GVNGSGKTTSIAKMAHRLSREGRQVILAAADTFRAAAIDQLKEWGQRISVPVISQQPNAD 200 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 A+ Y+A + AQ++ DVLI+DTAGRLH LM + K+ +V+++ P PH +L V+ Sbjct: 201 PGAVVYDAIQAAQSRGSDVLIVDTAGRLHTKYNLMEELKKINKVIQKFIPDGPHELLIVI 260 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DATTGQNAL Q F G TG+I++K+D TA+GG + +P+ F+ GE + + Sbjct: 261 DATTGQNALLQARKFAEDIGLTGVIISKLDSTAKGGFAFAVADDLGVPIKFIATGEKVEN 320 Query: 298 LEPFVAKDFSAVI 310 L PF + F A + Sbjct: 321 LIPFDPQSFVAAL 333 >gi|282895592|ref|ZP_06303726.1| Cell division transporter substrate-binding protein FtsY [Raphidiopsis brookii D9] gi|281199432|gb|EFA74296.1| Cell division transporter substrate-binding protein FtsY [Raphidiopsis brookii D9] Length = 542 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 102/308 (33%), Positives = 178/308 (57%), Gaps = 5/308 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + ++ E ++W++KL +G T + + I+ L+ E+E +L+++D+GV Sbjct: 229 EDISIEEITWLKKLRQGLDKTRRNILNQLKAIVGQGPLNQDAVAEIEGVLLQADVGVEAT 288 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPH---VILVVGV 119 I++ L K + ++ + + +++ ML PL F+ + L+ GV Sbjct: 289 DLIIQSLQKKLRDEVTPPEQAIAYLKQILRDMLEKPLESAPRSGFAPEKDKLTIWLITGV 348 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178 NG GKTT IGK++ +G ++AA DTFR+AA++Q+K+W R+ + + + +D Sbjct: 349 NGAGKTTTIGKIAHLAQKSGYNCLIAAADTFRAAAVEQVKVWGSRSGVEVIANPGKNTDP 408 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A AQ++K ++L++DTAGRL N LM + K+ R++ + A L VLD Sbjct: 409 AAIVFDAIAAAQSRKTELLLVDTAGRLQNKKNLMDELSKIRRIIDKKAADARVESLLVLD 468 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 +T GQN +RQ E+F A +G+++TK+DGTA+GG + +V +P+ F+G GEGI DL Sbjct: 469 STLGQNGIRQAEVFSQAAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGAGEGIEDL 528 Query: 299 EPFVAKDF 306 PF + +F Sbjct: 529 RPFSSYEF 536 >gi|154509175|ref|ZP_02044817.1| hypothetical protein ACTODO_01696 [Actinomyces odontolyticus ATCC 17982] gi|153798809|gb|EDN81229.1| hypothetical protein ACTODO_01696 [Actinomyces odontolyticus ATCC 17982] Length = 413 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 119/311 (38%), Positives = 184/311 (59%), Gaps = 17/311 (5%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 + +L + AS+ L I ++S +L EE+E+ L+ +D+G+ ++E L + Sbjct: 106 MERLRERLASSG-SLGRAILGVLSRGQLGAADWEEIEESLLIADLGLEATDTLMEALKRR 164 Query: 74 RYAKDVSVQ---------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 + V+ + +L V + + L L +P D S +P V+L+VGVNG GK Sbjct: 165 VAVESVTDEARIREILREELLELVDPAMDRSLN-LERP-EVDGSVKPAVVLMVGVNGTGK 222 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAY 183 TT +GKL++ + V+L A DTFR+AA DQL W +R D V S+ G+D A++A+ Sbjct: 223 TTTVGKLARILVAEDKSVILGAADTFRAAAADQLATWGERVGVDVVRSDREGADPASVAF 282 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS-VLQVLDATTG 242 EA ++ + VDV+++DTAGRL N S LM +GK+ RV+ + AP S VL VLDATTG Sbjct: 283 EAVREGVERDVDVVLVDTAGRLQNKSTLMDELGKIKRVMTK---QAPVSEVLLVLDATTG 339 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QN ++Q E+F G TG+++TK+DG+A+GG ++ + +PV F+G+GEG +DL PF Sbjct: 340 QNGMKQAEVFAEATGVTGIVLTKLDGSAKGGIVVSVQRALGVPVKFVGLGEGADDLAPFD 399 Query: 303 AKDFSAVITGC 313 + F I G Sbjct: 400 PQGFVDAIVGS 410 >gi|116071796|ref|ZP_01469064.1| Cell division transporter substrate-binding protein FtsY [Synechococcus sp. BL107] gi|116065419|gb|EAU71177.1| Cell division transporter substrate-binding protein FtsY [Synechococcus sp. BL107] Length = 530 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 113/315 (35%), Positives = 182/315 (57%), Gaps = 8/315 (2%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +++ E + W+ +L +G T G+ + + L V +ELE LL+R+D GV Sbjct: 216 QISLEEIDWLGRLRRGLEKTRQGFVTGLLENLGDDPLTPEVLDELETLLLRADAGVQATD 275 Query: 65 KIVEELLTKRYAKDV--SVQRVLYDVSELIHKMLMPLSK---PFNWDFSHRPHVILVVGV 119 +++E L +R +DV V+ + + +L + P+ P R ++ L+VGV Sbjct: 276 QVLE-ALRQRMNEDVVDPVEGIRFLKDQLRGLLDAPIKASGVPLLAPERGRLNIWLMVGV 334 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDA 178 NGVGKTT +GKL+ +G ++AA DTFR+AA+ Q+++W +R+ V + +D Sbjct: 335 NGVGKTTTLGKLANLAVRSGYSALIAAADTFRAAAVQQVEVWGERSDVAVVSNPSSNADP 394 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A A+++ D+L++DTAGRL LM + K+ +++ RL P A L VLD Sbjct: 395 AAVVFDAIGAARSRDTDLLLVDTAGRLQTKHNLMEELQKVRKIIDRLAPEANVESLLVLD 454 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A+ GQN LRQ F AG TG+++TK+DGTARGG + + +P+ F+G GEGI DL Sbjct: 455 ASQGQNGLRQAMAFAKAAGLTGVVVTKLDGTARGGVALAVSSEAGLPIRFIGAGEGIRDL 514 Query: 299 EPFVAKDF-SAVITG 312 PF + +F A++ G Sbjct: 515 RPFNSFEFVEALLAG 529 >gi|213691143|ref|YP_002321729.1| signal recognition particle-docking protein FtsY [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522604|gb|ACJ51351.1| signal recognition particle-docking protein FtsY [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457201|dbj|BAJ67822.1| signal recognition particle-docking protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 420 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 113/301 (37%), Positives = 181/301 (60%), Gaps = 13/301 (4%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 +++L + + + + +I++ +L + E++ED L+ +D+G ++++VEEL Sbjct: 119 MQRLKARLSKSGNPFGKALFNILAKDQLSEADWEDVEDTLLLADVGAEASEQLVEEL--- 175 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWD--FSHRPHVILVVGVNGVGKTT 126 R ++ Q +V + L+ L + N D +++P V+++VGVNG GKTT Sbjct: 176 RNDARIAGQSDPAEVRAALKDKLLKLVGTDIDRRLNADKDGANKPSVVIMVGVNGTGKTT 235 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEA 185 GKLS+ + G +VM+ A DTFR+AA DQL+ W R + V S+ G+D A++A+EA Sbjct: 236 TAGKLSRLLVSEGKQVMMGAADTFRAAAADQLETWGARVNVPVVRSDKDGADPASVAFEA 295 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 +A+ DVLIIDTAGRL N S LM +GK+ RV ++ P VL VLDATTGQN Sbjct: 296 SAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLPV--DEVLLVLDATTGQNG 353 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + Q ++F G TG++++K+DG+A+GG +I + +PV +G+GEG +DL PF + Sbjct: 354 MAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAPFDPEG 413 Query: 306 F 306 F Sbjct: 414 F 414 >gi|171912808|ref|ZP_02928278.1| signal recognition particle-docking protein FtsY [Verrucomicrobium spinosum DSM 4136] Length = 281 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 106/260 (40%), Positives = 156/260 (60%), Gaps = 3/260 (1%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 ++LE LI D+G ++ +IV++L K A+ + Q ++ + I ++L P Sbjct: 20 DDLEAQLIAGDLGAKLSMQIVDDL--KDQARKLHDQDIVEVTKKHIRRILPETVAPVK-P 76 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 F +P V+L+VGVNG GKTT KL+ + G ++LAA DTFR+AA++QL++WA R Sbjct: 77 FGDKPKVLLIVGVNGTGKTTSTAKLANLLKKQGHSLVLAAADTFRAAAVEQLEVWAKRVD 136 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + D +A+ ++A+ A A+K D LI DTAGRLH LM + K+ R L + D Sbjct: 137 VPIIKGPPNGDPSAVCFDAYSSAIARKADFLICDTAGRLHTRHNLMEELRKVQRTLGKKD 196 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P APH VL V+DATTG NAL+Q + F+ TG+I+TK+DG+ +GG L+ I IP Sbjct: 197 PTAPHEVLLVVDATTGGNALQQAKEFNKTVPLTGVIVTKLDGSGKGGVLVAIQQELGIPA 256 Query: 287 YFLGVGEGINDLEPFVAKDF 306 F+G GE + D E FV + F Sbjct: 257 RFVGTGEHMEDFEAFVPETF 276 >gi|310288155|ref|YP_003939414.1| Cell division protein ftsY [Bifidobacterium bifidum S17] gi|309252092|gb|ADO53840.1| Cell division protein ftsY [Bifidobacterium bifidum S17] Length = 413 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 119/309 (38%), Positives = 184/309 (59%), Gaps = 13/309 (4%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 V ES S I++L + +S + + +I++ L + E++ED L+ +D+G +++ Sbjct: 104 VPEESGSRIQRLKAKLSKSSNPFGKALFNILTKDNLSESDWEDVEDTLLLADVGAEASEQ 163 Query: 66 IVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF--SHRPHVILVVG 118 +V EL +T + + D V+ L D L+ + + N D +H+P VI++VG Sbjct: 164 LVGELRRDARITGKASPD-EVRATLRD--NLLDLVGRDTDRRLNVDKPDAHKPGVIIMVG 220 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSD 177 VNG GKTT GKL++ KV++ A DTFR+AA DQL+ W R + V S+ G+D Sbjct: 221 VNGTGKTTTAGKLARLFVSEDKKVVMGAADTFRAAAADQLETWGARVNVPVVRSDKDGAD 280 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 A++A+EA +A+ DVLIIDTAGRL N S LM +GK+ RV ++ P VL VL Sbjct: 281 PASVAFEAAARAKEDDADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLPV--DEVLLVL 338 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DATTGQN + Q ++F G TG++++K+DG+A+GG +I + +PV +G+GEG +D Sbjct: 339 DATTGQNGMAQAKVFAEAIGLTGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDD 398 Query: 298 LEPFVAKDF 306 L PF + F Sbjct: 399 LAPFDPEGF 407 >gi|269925892|ref|YP_003322515.1| signal recognition particle-docking protein FtsY [Thermobaculum terrenum ATCC BAA-798] gi|269789552|gb|ACZ41693.1| signal recognition particle-docking protein FtsY [Thermobaculum terrenum ATCC BAA-798] Length = 314 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 111/301 (36%), Positives = 166/301 (55%), Gaps = 8/301 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-- 73 K+ G + + + + + D EELE+LLI +D+GV +++ L + Sbjct: 18 KIESGLEKSRRGIFSQVAALFDREEITDSTWEELEELLIAADVGVETTLMLLDVLQDRVE 77 Query: 74 --RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 R + +++ L + EL + ++P + V+L+VGVNGVGKTT + KL Sbjct: 78 AERIRRPSELRKALKE--ELQAILDSAPNQPVEVN-DGELLVMLIVGVNGVGKTTTVAKL 134 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K + G KV++ A DTFR+AAIDQL+IW +R + SD AA+ ++A A++ Sbjct: 135 AHKFASEGAKVVVGAADTFRAAAIDQLQIWGERAGVPVIAGAPNSDPAAVVHDALAAARS 194 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + DVLI+DTAGRLH LM + K+ RV+ R A ++L VLDATTGQN L Q Sbjct: 195 RSADVLIVDTAGRLHTKYNLMEELKKIQRVIDRNGSPAQENLL-VLDATTGQNGLVQARK 253 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F G+++ KMDGTA+GG IV KIP+ +L GE + D+ F +KDF + Sbjct: 254 FAQAVHLDGVVLAKMDGTAKGGIAFAIVNEMKIPIRYLTTGEKLGDIAEFDSKDFVNALL 313 Query: 312 G 312 G Sbjct: 314 G 314 >gi|289523210|ref|ZP_06440064.1| signal recognition particle-docking protein FtsY [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503753|gb|EFD24917.1| signal recognition particle-docking protein FtsY [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 305 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 105/272 (38%), Positives = 165/272 (60%), Gaps = 6/272 (2%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELIHKM- 95 +++D+ + LE+ L+ D+GV + ++V EL + ++ R L + V ++ K+ Sbjct: 30 KKIDESFWDGLEEQLLLGDVGVDLTDELVAELRQEARKSNIKDTRDLKEKFVDLIVRKLE 89 Query: 96 -LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 + + KP + ++P V+L+VGVNG GKTT KL+ K++ G KV+LAA DT+R+AA Sbjct: 90 EIPGMGKPI--ETKNKPAVVLLVGVNGSGKTTTAAKLASKLASEGKKVLLAAADTYRAAA 147 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 IDQLK+W ++ + V ++G D AA+ Y+A + A A D++I DTAGRLH LM Sbjct: 148 IDQLKVWGEKINVRVVAHDVGGDPAAVIYDAIESAVASDGDLVIADTAGRLHTKHNLMEE 207 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + K+ RV++R P P L VLDA GQNA Q E+F+ TG+I+ K D TA+GG Sbjct: 208 LKKVKRVVERRLPDEPSESLLVLDAVMGQNAFYQAEVFNEALSLTGVILAKYDNTAKGGI 267 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++ + +P+ ++G+GEG DLE F + F Sbjct: 268 ILAVAQRMSLPIRYVGLGEGSEDLELFEPRSF 299 >gi|224283584|ref|ZP_03646906.1| Signal recognition particle GTPase [Bifidobacterium bifidum NCIMB 41171] gi|313140735|ref|ZP_07802928.1| FtsY signal recognition particle [Bifidobacterium bifidum NCIMB 41171] gi|313133245|gb|EFR50862.1| FtsY signal recognition particle [Bifidobacterium bifidum NCIMB 41171] Length = 413 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 119/309 (38%), Positives = 184/309 (59%), Gaps = 13/309 (4%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 V ES S I++L + +S + + +I++ L + E++ED L+ +D+G +++ Sbjct: 104 VPEESGSRIQRLKAKLSKSSNPFGKALFNILTKDNLSESDWEDVEDTLLLADVGAEASEQ 163 Query: 66 IVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF--SHRPHVILVVG 118 +V EL +T + + D V+ L D L+ + + N D +H+P VI++VG Sbjct: 164 LVGELRRDARITGKASPD-EVRATLRD--NLLDLVGRDTDRRLNVDKPDAHKPGVIIMVG 220 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSD 177 VNG GKTT GKL++ KV++ A DTFR+AA DQL+ W R + V S+ G+D Sbjct: 221 VNGTGKTTTAGKLARLFVSEDKKVVMGAADTFRAAAADQLETWGARVNVPVVRSDKDGAD 280 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 A++A+EA +A+ DVLIIDTAGRL N S LM +GK+ RV ++ P VL VL Sbjct: 281 PASVAFEAAARAKEDDADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLPV--DEVLLVL 338 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DATTGQN + Q ++F G TG++++K+DG+A+GG +I + +PV +G+GEG +D Sbjct: 339 DATTGQNGMAQAKVFAEAIGLTGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDD 398 Query: 298 LEPFVAKDF 306 L PF + F Sbjct: 399 LAPFDPEGF 407 >gi|88596279|ref|ZP_01099516.1| signal recognition particle-docking protein FtsY [Campylobacter jejuni subsp. jejuni 84-25] gi|157415469|ref|YP_001482725.1| signal recognition particle-docking protein FtsY [Campylobacter jejuni subsp. jejuni 81116] gi|88191120|gb|EAQ95092.1| signal recognition particle-docking protein FtsY [Campylobacter jejuni subsp. jejuni 84-25] gi|157386433|gb|ABV52748.1| putative signal recognition particle protein [Campylobacter jejuni subsp. jejuni 81116] gi|284926430|gb|ADC28782.1| putative signal recognition particle protein [Campylobacter jejuni subsp. jejuni IA3902] gi|307748111|gb|ADN91381.1| Signal recognition particle-docking protein FtsY [Campylobacter jejuni subsp. jejuni M1] gi|315932351|gb|EFV11294.1| signal recognition particle-docking protein FtsY [Campylobacter jejuni subsp. jejuni 327] Length = 288 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 97/267 (36%), Positives = 153/267 (57%), Gaps = 13/267 (4%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 LE++L+ +D+ + ++I+ L + K ++RV+ + K N + Sbjct: 31 LEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVM-------GSYFLYEKKETNQE-- 81 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +P V L++GVNG GKTT I KL+ + KV+L A DTFR+ AI+QLK+WA + D Sbjct: 82 -KPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVD 140 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V + G D +A+A++ +A+AK D +IIDTAGRL N L + K++R+ + Sbjct: 141 IVLTAQGHDPSAVAFDTISKAKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEG 200 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 APH + VLD T G + Q + F+ + G+I+TK+DGTA+GG L I ++P+++ Sbjct: 201 APHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFY 260 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +GVGE + DL+ F A SA + LD Sbjct: 261 VGVGEQMTDLQEFNA---SAYLDTLLD 284 >gi|162451180|ref|YP_001613547.1| cell division membrane protein [Sorangium cellulosum 'So ce 56'] gi|161161762|emb|CAN93067.1| cell division membrane protein [Sorangium cellulosum 'So ce 56'] Length = 453 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 99/274 (36%), Positives = 165/274 (60%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 + +D V E++E++L+ SD+GV + +++E+ + +++ ++D K ++ Sbjct: 170 KEIDPNVVEQIEEVLLTSDVGVKTTELLLDEIRSALSRNELADTDKVWDALREHAKRILR 229 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 + +P V++VVGVNGVGKTT IGKL+ ++ G V+LAAGDTFR+AA+ QL Sbjct: 230 VGAGGGLPLKAQPTVVMVVGVNGVGKTTTIGKLATQLKAEGRTVVLAAGDTFRAAAVQQL 289 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 +W R + V + G++ A+ ++A ++A+ DV++ DTAGRLH + LM + ++ Sbjct: 290 NVWGKRVGCEVVRGKDGANPGAVIFDAIQKAKDTGADVVLADTAGRLHTKTNLMEELSRV 349 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 R + + APH L VLDAT GQNA++Q +F TG+++TK+DGTA+GG ++ I Sbjct: 350 ARTMNKALEGAPHETLLVLDATNGQNAMQQAALFKEALPITGIVLTKLDGTAKGGVILGI 409 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 H +PV ++G+GE DL F +F + G Sbjct: 410 CAEHGLPVRYVGIGERAEDLREFEPDEFVEAMLG 443 >gi|255078482|ref|XP_002502821.1| type II secretory pathway family [Micromonas sp. RCC299] gi|226518087|gb|ACO64079.1| type II secretory pathway family [Micromonas sp. RCC299] Length = 382 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 107/269 (39%), Positives = 158/269 (58%), Gaps = 19/269 (7%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAK---------DVSVQRVLYDVSELIHKMLM 97 EELED L+ D G A I++ ++ +R K +++R + D+ + Sbjct: 103 EELEDTLLSVDFGPTTAMNILD-VVRERCEKGEIKTGAEVKAALKRAIVDILVRANDG-K 160 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAID 156 + P + P VI+VVGVNG GKTT +GKLS + + ++G KVML GDTFR+AA + Sbjct: 161 EGTAPLKLNEGDGPSVIMVVGVNGGGKTTTVGKLSHRFAKESGAKVMLVPGDTFRAAAAE 220 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-QAKKVDVLIIDTAGRLHNNSILM--- 212 QL WA+R++ + G AL Y+A +A + +D+++ DT+GRLH N LM Sbjct: 221 QLATWAERSAGVMATYKDGMKPGALCYQAVDEAIKMGDIDIVLADTSGRLHTNCDLMDEL 280 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 AGI K I KR++ +PH V VLD TTG N L Q F+ + TG+I+TK+DGT++G Sbjct: 281 AGIKKSIG--KRME-GSPHEVALVLDGTTGLNMLNQAREFNKMVDVTGIILTKLDGTSKG 337 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 G ++ +V +PV F+GVGE I+DL+ F Sbjct: 338 GAVVSVVDELGVPVKFVGVGEAIDDLQTF 366 >gi|283956599|ref|ZP_06374078.1| signal recognition particle-docking protein FtsY [Campylobacter jejuni subsp. jejuni 1336] gi|283791848|gb|EFC30638.1| signal recognition particle-docking protein FtsY [Campylobacter jejuni subsp. jejuni 1336] Length = 288 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 94/258 (36%), Positives = 148/258 (57%), Gaps = 10/258 (3%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 LE++L+ +D+ + ++IV L + K ++RV+ + K N Sbjct: 31 LEEILLEADVSYEIVEEIVYYLPPQNEVKKEDLKRVM-------GSYFLYEKKETN---Q 80 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +P V L++GVNG GKTT I KL+ + KV+L A DTFR+ AI+QLK+WA + D Sbjct: 81 EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVD 140 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V + G D +A+A++ +A+AK D +IIDTAGRL N L + K++R+ + Sbjct: 141 IVLTAQGHDPSAVAFDTISKAKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEG 200 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 APH + VLD T G + Q + F+ + G+I+TK+DGTA+GG L I ++P+++ Sbjct: 201 APHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFY 260 Query: 289 LGVGEGINDLEPFVAKDF 306 +GVGE + DL+ F A + Sbjct: 261 VGVGEQMTDLQEFNANAY 278 >gi|315639091|ref|ZP_07894259.1| cell division protein FtsY [Campylobacter upsaliensis JV21] gi|315480867|gb|EFU71503.1| cell division protein FtsY [Campylobacter upsaliensis JV21] Length = 288 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 98/288 (34%), Positives = 164/288 (56%), Gaps = 17/288 (5%) Query: 21 FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80 F + K E IT ++ ++ ++ LE++L+ +D+ + ++I+ L K Sbjct: 5 FKKSLAKTLENITKTRANHKIS---KDLLEEILLEADVAYEIVEEIIYYLPPTDEVKKAD 61 Query: 81 VQRVL--YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138 ++RV+ Y + E P S + +P V L++GVNG GKTT I KL+ Sbjct: 62 LKRVMGAYFLYE------NPESS------TQKPFVELILGVNGAGKTTSIAKLANLYKKQ 109 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 G KV+L A DTFR+ AI+QL++WA++ V S G D +A+A++ +A+A+ D +I Sbjct: 110 GQKVILGACDTFRAGAIEQLRLWAEKIGVQIVLSNQGHDPSAVAFDTISKAKARDFDRVI 169 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +DTAGRL N L + K++R+ ++ +APH + VLD T G + Q + F+ + Sbjct: 170 LDTAGRLQNQKNLANELEKIVRICEKAMTNAPHRKILVLDGTQGNAGILQAKAFNELIKL 229 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G+I+TK+DGTA+GG L I ++P++++GVGE ++DL F A + Sbjct: 230 DGVIITKLDGTAKGGALFSIARELELPIFYVGVGEKMDDLYEFDANAY 277 >gi|86150925|ref|ZP_01069141.1| signal recognition particle-docking protein FtsY [Campylobacter jejuni subsp. jejuni 260.94] gi|315124672|ref|YP_004066676.1| signal recognition particle-docking protein FtsY [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85842095|gb|EAQ59341.1| signal recognition particle-docking protein FtsY [Campylobacter jejuni subsp. jejuni 260.94] gi|315018394|gb|ADT66487.1| signal recognition particle-docking protein FtsY [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 288 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 97/267 (36%), Positives = 152/267 (56%), Gaps = 13/267 (4%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 LE++L+ +D+ + ++I+ L + K ++RV+ + K N Sbjct: 31 LEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVM-------GSYFLYEKKETN---Q 80 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +P V L++GVNG GKTT I KL+ + KV+L A DTFR+ AI+QLK+WA + D Sbjct: 81 EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVD 140 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V + G D +A+A++ +A+AK D +IIDTAGRL N L + K++R+ + Sbjct: 141 IVLTAQGHDPSAVAFDTISKAKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEG 200 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 APH + VLD T G + Q + F+ + G+I+TK+DGTA+GG L I ++P+++ Sbjct: 201 APHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFY 260 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +GVGE + DL+ F A SA + LD Sbjct: 261 VGVGEQMTDLQEFNA---SAYLDTLLD 284 >gi|86150380|ref|ZP_01068606.1| signal recognition particle-docking protein FtsY [Campylobacter jejuni subsp. jejuni CF93-6] gi|148926209|ref|ZP_01809894.1| putative signal recognition particle protein [Campylobacter jejuni subsp. jejuni CG8486] gi|205356228|ref|ZP_03222994.1| putative signal recognition particle protein [Campylobacter jejuni subsp. jejuni CG8421] gi|85839205|gb|EAQ56468.1| signal recognition particle-docking protein FtsY [Campylobacter jejuni subsp. jejuni CF93-6] gi|145845380|gb|EDK22473.1| putative signal recognition particle protein [Campylobacter jejuni subsp. jejuni CG8486] gi|205345833|gb|EDZ32470.1| putative signal recognition particle protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 288 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 97/267 (36%), Positives = 153/267 (57%), Gaps = 13/267 (4%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 LE++L+ +D+ + ++I+ L + K ++RV+ + K N + Sbjct: 31 LEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVM-------GSYFLYEKKETNQE-- 81 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +P V L++GVNG GKTT I KL+ + KV+L A DTFR+ AI+QLK+WA + D Sbjct: 82 -KPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVD 140 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V + G D +A+A++ +A+AK D +IIDTAGRL N L + K++R+ + Sbjct: 141 IVLTAQGHDPSAVAFDTISKAKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEG 200 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 APH + VLD T G + Q + F+ + G+I+TK+DGTA+GG L I ++P+++ Sbjct: 201 APHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFY 260 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +GVGE + DL+ F A SA + LD Sbjct: 261 VGVGEQMTDLQEFNA---SAYLDTLLD 284 >gi|33242339|ref|NP_877280.1| ftsY cell division protein [Chlamydophila pneumoniae TW-183] gi|33236850|gb|AAP98937.1| ftsY cell division protein [Chlamydophila pneumoniae TW-183] Length = 310 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 94/255 (36%), Positives = 140/255 (54%), Gaps = 3/255 (1%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 E+ E L +D G + +++ L R+ K + ++ L+ + L L + Sbjct: 43 EDAESLFYEADFGTELTEELCARL---RWTKKADASTIKDLITVLLRESLEGLPSQASQS 99 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 RP V L++G NG GKTT KL+ + VML A DTFR+A +DQ ++WA+ Sbjct: 100 SQTRPIVSLLLGTNGSGKTTTAAKLAHYYKERSESVMLVATDTFRAAGMDQARLWANELG 159 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 FV + G DAAA+A++ + A A+ +IIDT+GRLH + LM + K++ V + Sbjct: 160 CGFVSGQPGGDAAAIAFDGIQSAIARGYSRVIIDTSGRLHVHGNLMKELSKIVSVCGKAL 219 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 APH + +D+T G NA+ QV +FH V +GLI TK+DG+A+GG L I KIP Sbjct: 220 EGAPHEIFMTVDSTLGNNAIEQVRVFHDVVPLSGLIFTKVDGSAKGGTLFQIAKRLKIPT 279 Query: 287 YFLGVGEGINDLEPF 301 F+G GE + DL F Sbjct: 280 KFIGYGESLKDLNEF 294 >gi|39939165|ref|NP_950931.1| signal recognition particle-docking protein FtsY [Onion yellows phytoplasma OY-M] gi|39722274|dbj|BAD04764.1| signal recognition particle-docking protein [Onion yellows phytoplasma OY-M] Length = 347 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 84/202 (41%), Positives = 130/202 (64%), Gaps = 6/202 (2%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 ++ P + L GVNGVGKTT IGK+++ + G KV+L A DTFR+ A++QL+IWA R Sbjct: 134 NNLPQMYLFTGVNGVGKTTTIGKMAEALKQEGKKVLLIAADTFRAGAVEQLQIWAKRVGV 193 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + C + + A++ +E + A+++ D+++ DTAGRL N + LM + K+ RV+ + Sbjct: 194 EVFCKPLPAHPASVIFEGIELAKSQNYDIILCDTAGRLQNKTNLMQELSKINRVICK--- 250 Query: 228 HAPHSVLQ---VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 H P S LQ VLDATTGQNA+ QV++F+ +G I+TK+DGT++GG + I + + Sbjct: 251 HLPASNLQTFLVLDATTGQNAINQVDLFNQATPLSGAILTKLDGTSKGGIVFAIKYLYNL 310 Query: 285 PVYFLGVGEGINDLEPFVAKDF 306 P ++GVGE DL F K++ Sbjct: 311 PTKYIGVGEKSQDLITFDVKNY 332 >gi|118475105|ref|YP_891693.1| signal recognition particle-docking protein FtsY [Campylobacter fetus subsp. fetus 82-40] gi|261886461|ref|ZP_06010500.1| signal recognition particle-docking protein FtsY [Campylobacter fetus subsp. venerealis str. Azul-94] gi|118414331|gb|ABK82751.1| signal recognition particle-docking protein FtsY [Campylobacter fetus subsp. fetus 82-40] Length = 289 Score = 172 bits (437), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 98/293 (33%), Positives = 159/293 (54%), Gaps = 22/293 (7%) Query: 28 LKEGITDIISSRRLDDGVREE-LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV-- 84 L++ I + S+R D + ++ LE+LL+ +D+ + ++I+ L K + RV Sbjct: 9 LEKTINAVASNRPQDKKITKDILEELLLEADVPYEITEEIIYYLPPKDIVSKDDLTRVMQ 68 Query: 85 ---LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 LYD N +P + +++GVNG GKTT I KL+ +G Sbjct: 69 TYFLYD----------------NKKIEAKPFIQMIIGVNGAGKTTTIAKLANLYKTSGKS 112 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 V+L A DTFR+ A++Q+K+WA++ + S G D AA+A++ A AK+ D IIDT Sbjct: 113 VLLGASDTFRAGAVEQIKLWANKLDVPIIASSQGHDPAAVAFDTISSAVAKRYDYAIIDT 172 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AGRL N L + + K++R+ + APH + VLD T G + Q + F+ + G+ Sbjct: 173 AGRLQNQKNLASELEKIVRISNKAFEGAPHQKILVLDGTQGSAGVAQAKAFNDIVKIDGV 232 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 I+TK+DGT++GG L + ++P+ ++GVGE + DL F AK+F I + Sbjct: 233 IITKLDGTSKGGALFGVARELELPILYIGVGERMEDLIKFDAKEFVDTICDAI 285 >gi|223939371|ref|ZP_03631250.1| signal recognition particle-docking protein FtsY [bacterium Ellin514] gi|223891975|gb|EEF58457.1| signal recognition particle-docking protein FtsY [bacterium Ellin514] Length = 255 Score = 172 bits (437), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 87/198 (43%), Positives = 127/198 (64%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 V+ +VGVNG GKTT K++ + G +LAA DTFR+AAI+QLK+W +R + Sbjct: 53 VVSIVGVNGTGKTTTAAKMAHMIQQQGKISVLAACDTFRAAAIEQLKLWGERLKVPVIAG 112 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 +D AA+A++A + A++ D LI+DTAGRLH LM + K+ RV+ + APH Sbjct: 113 ADKADPAAIAHDAITASLARRADYLIVDTAGRLHTKHNLMQELQKLHRVMGKQLAGAPHE 172 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 VL VLDATTG NAL Q FH TGL++TK+DGT++GG ++ I +P+ F+G+G Sbjct: 173 VLLVLDATTGMNALNQAREFHKAVPLTGLVVTKLDGTSKGGMVVAIQKELGLPIKFVGLG 232 Query: 293 EGINDLEPFVAKDFSAVI 310 E +DL+PF A+ ++ + Sbjct: 233 EQPDDLQPFDARQYAQAL 250 >gi|296453395|ref|YP_003660538.1| signal recognition particle-docking protein FtsY [Bifidobacterium longum subsp. longum JDM301] gi|296182826|gb|ADG99707.1| signal recognition particle-docking protein FtsY [Bifidobacterium longum subsp. longum JDM301] Length = 420 Score = 172 bits (437), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 112/281 (39%), Positives = 172/281 (61%), Gaps = 13/281 (4%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH 93 +I++ +L + E++ED L+ +D+G ++++VEEL R ++ Q +V + Sbjct: 139 NILAKDQLSEADWEDVEDTLLLADVGAEASEQLVEEL---RNDARIAGQSDPAEVRAALK 195 Query: 94 KMLMPL-----SKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 L+ L + N D +++P V+++VGVNG GKTT GKLS+ + G +VML A Sbjct: 196 DKLLKLVGTDIDRRLNADKDGANKPSVVIMVGVNGTGKTTTAGKLSRLLVSEGKQVMLGA 255 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 DTFR+AA DQL+ W + V S+ G+D A++A+EA +A+ DVLIIDTAGRL Sbjct: 256 ADTFRAAAADQLETWGAKVGVPVVRSDKDGADPASVAFEASAKAKEANADVLIIDTAGRL 315 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 N S LM +GK+ RV ++ P VL VLDATTGQN + Q ++F G TG++++K Sbjct: 316 QNKSNLMDELGKIRRVTEKNLPV--DEVLLVLDATTGQNGMAQAKVFAEAIGITGVVLSK 373 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +DG+A+GG +I + +PV +G+GEG +DL PF + F Sbjct: 374 LDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAPFDPEGF 414 >gi|295099734|emb|CBK88823.1| signal recognition particle-docking protein FtsY [Eubacterium cylindroides T2-87] Length = 321 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 107/280 (38%), Positives = 155/280 (55%), Gaps = 5/280 (1%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELIHKMLMP 98 ++D + EE+ +L+ SD+G+ AQKIV+ + AKD+ + D +S L Sbjct: 45 INDELLEEIMVILLESDVGIHTAQKIVDAF--EPNAKDLKNYDSMEDYLISILYDFYDEE 102 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 P N++ P VIL+VGVNG GKTT KL + V + A DTFR+ AIDQ+ Sbjct: 103 QDAPINYN-EDGPTVILMVGVNGSGKTTTSAKLIRHYLQQQKSVAVVAADTFRAGAIDQI 161 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 WA+R + + D +++ + + A+ VD+LI DTAGRL N + LM + KM Sbjct: 162 DTWANRLGVPCIKGKPNQDPSSVIVDGCRYAKEHNVDILICDTAGRLQNKTNLMNELSKM 221 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 RV+ + PH V VLDATTGQN + Q ++F +G+++TKMDGTA+GG ++ I Sbjct: 222 RRVVSKEIEGGPHEVWLVLDATTGQNGISQAKIFLEATDVSGIVLTKMDGTAKGGVVLAI 281 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 +PV FLG+GE DL+ F F IT +D E Sbjct: 282 RDLLHLPVRFLGLGEKPEDLKSFDINAFLMGITKGMDADE 321 >gi|71893367|ref|YP_278813.1| cell division protein ftsY [Mycoplasma hyopneumoniae J] gi|71851494|gb|AAZ44102.1| cell division protein ftsY [Mycoplasma hyopneumoniae J] Length = 333 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 98/267 (36%), Positives = 157/267 (58%), Gaps = 6/267 (2%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSELIHKM 95 ++D+ EELE++LI SDI + I++ L + +++ + ++ D I+ Sbjct: 49 KIDENFFEELEEILIMSDISPNFVRTIIDSLKAEVRHHNLNNPDLIPEIIMDKMYTIYSN 108 Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 ++ N R +V L+ GVNG GKTT I K+++K G KV++ A DTFR+AA+ Sbjct: 109 RSVVNTNLNIK-DGRINVFLISGVNGSGKTTSIAKVARKFIIEGKKVLIIAADTFRAAAV 167 Query: 156 DQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 +QL+IWA+R A + E D ++ + A +K D+++IDTAGRL NN LM Sbjct: 168 EQLEIWANRVGALILKPEANEKDPGSVVFRGLDFAIKEKTDLVLIDTAGRLQNNVNLMQE 227 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + K+ +++ + P+APH L V+DATTGQN + Q F + +G+I+TKMDGT++GG Sbjct: 228 LKKINKIISQKVPNAPHESLLVIDATTGQNGVSQAANFAKITPVSGIILTKMDGTSKGGI 287 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301 + I I V +G+GE ++DL+PF Sbjct: 288 IFSIKDQLDISVKLVGLGEAMDDLQPF 314 >gi|88809353|ref|ZP_01124861.1| signal recognition particle docking protein FtsY [Synechococcus sp. WH 7805] gi|88786572|gb|EAR17731.1| signal recognition particle docking protein FtsY [Synechococcus sp. WH 7805] Length = 480 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 112/314 (35%), Positives = 177/314 (56%), Gaps = 6/314 (1%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V E + W+ +L +G T G+ + + L V ++LE LL+R+D GV Sbjct: 166 QVTLEEIDWLGRLRQGLEKTRQGFVTGLLENLGDDPLTPEVLDDLESLLLRADAGVKATD 225 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVN 120 ++++ L + + V + + E + +L K + + +V L+VGVN Sbjct: 226 QVLDALRKRMNEQVVDPSEGIRFLKEQLRDLLDAPIKSSGVELLAPQRGQLNVWLMVGVN 285 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAA 179 GVGKTT +GKL+ +G M+AA DTFR+AA+ Q+++W DR+ V + +D A Sbjct: 286 GVGKTTTLGKLANLAVRSGYSAMIAAADTFRAAAVQQVQVWGDRSDVPVVANPSANADPA 345 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ ++A A++K D++++DTAGRL LM + K+ RV+ RL P A L VLDA Sbjct: 346 AVVFDAIGAARSKSTDLVLVDTAGRLQTKHNLMEELNKIRRVVDRLAPDATVESLLVLDA 405 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 + GQN L+Q F AG TG+++TK+DGTARGG + + +P+ F+G GEGI DL Sbjct: 406 SQGQNGLKQAMAFARAAGLTGVVITKLDGTARGGVALAVASEAGLPIRFIGAGEGIRDLR 465 Query: 300 PFVAKDF-SAVITG 312 PF + +F A++ G Sbjct: 466 PFNSFEFVEALLAG 479 >gi|54019977|ref|YP_115523.1| cell division protein ftsY [Mycoplasma hyopneumoniae 232] gi|72080350|ref|YP_287408.1| cell division protein ftsY [Mycoplasma hyopneumoniae 7448] gi|53987150|gb|AAV27351.1| cell division protein [Mycoplasma hyopneumoniae 232] gi|71913474|gb|AAZ53385.1| cell division protein ftsY [Mycoplasma hyopneumoniae 7448] Length = 333 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 98/267 (36%), Positives = 157/267 (58%), Gaps = 6/267 (2%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSELIHKM 95 ++D+ EELE++LI SDI + I++ L + +++ + ++ D I+ Sbjct: 49 KIDENFFEELEEILIMSDISPNFVRTIIDSLKAEVRHHNLNNPDLIPEIIMDKMYTIYSN 108 Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 ++ N R +V L+ GVNG GKTT I K+++K G KV++ A DTFR+AA+ Sbjct: 109 RSVVNTNLNIK-DGRINVFLISGVNGSGKTTSIAKVARKFIIEGKKVLIIAADTFRAAAV 167 Query: 156 DQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 +QL+IWA+R A + E D ++ + A +K D+++IDTAGRL NN LM Sbjct: 168 EQLEIWANRVGALILKPEANEKDPGSVVFRGLDFAIKEKTDLVLIDTAGRLQNNVNLMQE 227 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + K+ +++ + P+APH L V+DATTGQN + Q F + +G+I+TKMDGT++GG Sbjct: 228 LKKINKIISQKVPNAPHESLLVIDATTGQNGVSQAANFAKITPVSGIILTKMDGTSKGGI 287 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301 + I I V +G+GE ++DL+PF Sbjct: 288 IFSIKDQLDISVKLVGLGEAMDDLQPF 314 >gi|29840542|ref|NP_829648.1| signal recognition particle-docking protein FtsY [Chlamydophila caviae GPIC] gi|29834891|gb|AAP05526.1| signal recognition particle-docking protein FtsY [Chlamydophila caviae GPIC] Length = 285 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 95/273 (34%), Positives = 146/273 (53%), Gaps = 14/273 (5%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-----VSELIH 93 + L + E E L +D G + +++ L R + +V+ ++ ++ L H Sbjct: 15 KSLSTDLLEFTESLFYEADFGSDLTEELCSRLRKCRKPDESTVKDLVLSLLRETIANLPH 74 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 L P V L++G NG GKTT + KL+ KVM+ A DTFRSA Sbjct: 75 TELPQTEGPI---------VSLMLGTNGSGKTTTVAKLAHHYQSQSKKVMIVATDTFRSA 125 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 +DQ++ WA++ FV + G D AA+AY+ A ++ D ++IDT+GRLH ++ L+ Sbjct: 126 GMDQMRCWAEKLGCGFVAGKPGGDPAAIAYDGIASAISRGYDRVLIDTSGRLHTHTNLLN 185 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + K++ V ++ P +PH L +DAT G N + QV +FH +GLI+TK+DG+A+GG Sbjct: 186 ELSKIVSVCNKVHPGSPHERLMTIDATLGSNVIEQVRVFHDTIPLSGLILTKVDGSAKGG 245 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 L + KIP F+G GE I DLE F F Sbjct: 246 TLFRVAKQLKIPTKFVGYGELIGDLEEFQIDRF 278 >gi|157164288|ref|YP_001466926.1| signal recognition particle-docking protein FtsY [Campylobacter concisus 13826] gi|112799965|gb|EAT97309.1| signal recognition particle-docking protein FtsY [Campylobacter concisus 13826] Length = 288 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 164/290 (56%), Gaps = 16/290 (5%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 L +GF T I+ S+++D +E LE++L+ +D+ + ++I+ L + Sbjct: 5 LKRGFEKTF----GAISSAKKSKKID---KESLEEILLEADVAYEIVEEILYYLPPQDEV 57 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136 ++RV+ ++ ++ KPF V L++GVNG GKTT I KL+ Sbjct: 58 SRADLRRVMSSYFIYENERVIEPDKPF---------VDLILGVNGAGKTTTIAKLANLYK 108 Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196 + G V+L A DTFR+ AI+QL+ W+ R + V ++ G D +A+AY+ A AK +D Sbjct: 109 NNGKSVILGACDTFRAGAIEQLRQWSIRLNVPIVATQQGHDPSAVAYDTISSALAKGIDR 168 Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256 +I+DTAGRL N + L + K++R+ K+ APH + +LD T G + Q + F+ + Sbjct: 169 VILDTAGRLQNQTNLANELDKIVRISKKAYEKAPHRKILILDGTQGNAGVAQAKAFNEIV 228 Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G+I+TK+DGTA+GG L + ++P++++GVGE ++D+ F +F Sbjct: 229 SLDGVIITKLDGTAKGGALFGVARELELPIFYIGVGESMDDIIKFNPDEF 278 >gi|57238078|ref|YP_179327.1| signal recognition particle-docking protein FtsY [Campylobacter jejuni RM1221] gi|86152890|ref|ZP_01071095.1| signal recognition particle-docking protein FtsY [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613201|ref|YP_001000881.1| signal recognition particle-docking protein FtsY [Campylobacter jejuni subsp. jejuni 81-176] gi|167005791|ref|ZP_02271549.1| signal recognition particle-docking protein FtsY [Campylobacter jejuni subsp. jejuni 81-176] gi|57166882|gb|AAW35661.1| signal recognition particle-docking protein FtsY [Campylobacter jejuni RM1221] gi|85843775|gb|EAQ60985.1| signal recognition particle-docking protein FtsY [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249299|gb|EAQ72260.1| signal recognition particle-docking protein FtsY [Campylobacter jejuni subsp. jejuni 81-176] gi|315058638|gb|ADT72967.1| Signal recognition particle receptor protein FtsY [Campylobacter jejuni subsp. jejuni S3] Length = 288 Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 93/258 (36%), Positives = 148/258 (57%), Gaps = 10/258 (3%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 LE++L+ +D+ + ++I+ L + K ++RV+ + K N Sbjct: 31 LEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVM-------GSYFLYEKKETN---Q 80 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +P V L++GVNG GKTT I KL+ + KV+L A DTFR+ AI+QLK+WA + D Sbjct: 81 EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVD 140 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V + G D +A+A++ +A+AK D +IIDTAGRL N L + K++R+ + Sbjct: 141 IVLTAQGHDPSAVAFDTISKAKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEG 200 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 APH + VLD T G + Q + F+ + G+I+TK+DGTA+GG L I ++P+++ Sbjct: 201 APHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFY 260 Query: 289 LGVGEGINDLEPFVAKDF 306 +GVGE + DL+ F A + Sbjct: 261 VGVGEQMTDLQEFNANAY 278 >gi|15618880|ref|NP_225166.1| cell division protein FtsY [Chlamydophila pneumoniae CWL029] gi|15836504|ref|NP_301028.1| cell division protein ftsY [Chlamydophila pneumoniae J138] gi|16752059|ref|NP_445425.1| signal recognition particle protein FtsY [Chlamydophila pneumoniae AR39] gi|4377298|gb|AAD19109.1| Cell Division Protein FtsY [Chlamydophila pneumoniae CWL029] gi|7189800|gb|AAF38675.1| signal recognition particle protein FtsY [Chlamydophila pneumoniae AR39] gi|8979345|dbj|BAA99179.1| cell division protein ftsY [Chlamydophila pneumoniae J138] gi|269302762|gb|ACZ32862.1| signal recognition particle-docking protein FtsY [Chlamydophila pneumoniae LPCoLN] Length = 290 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 93/255 (36%), Positives = 142/255 (55%), Gaps = 3/255 (1%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 E+ E L +D G + +++ L + A +++ + ++ L+ + L L + Sbjct: 23 EDAESLFYEADFGTELTEELCARLRRTKKADASTIKDL---ITVLLRESLEGLPSQASQS 79 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 RP V L++G NG GKTT KL+ + VML A DTFR+A +DQ ++WA+ Sbjct: 80 SQTRPIVSLLLGTNGSGKTTTAAKLAHYYKERSESVMLVATDTFRAAGMDQARLWANELG 139 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 FV + G DAAA+A++ + A A+ +IIDT+GRLH + LM + K++ V + Sbjct: 140 CGFVSGQPGGDAAAIAFDGIQSAIARGYSRVIIDTSGRLHVHGNLMKELSKIVSVCGKAL 199 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 APH + +D+T G NA+ QV +FH V +GLI TK+DG+A+GG L I KIP Sbjct: 200 EGAPHEIFMTVDSTLGNNAIEQVRVFHDVVPLSGLIFTKVDGSAKGGTLFQIAKRLKIPT 259 Query: 287 YFLGVGEGINDLEPF 301 F+G GE + DL F Sbjct: 260 KFIGYGESLKDLNEF 274 >gi|25019706|gb|AAN71792.1| FtsY [Synechococcus elongatus PCC 7942] Length = 518 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 112/308 (36%), Positives = 174/308 (56%), Gaps = 5/308 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++++ E + W+ L +G T L + + L E +E LL+++D+GV Sbjct: 204 EEISIEEIDWLSSLRRGLDKTRRSLVNQLKSAVGQGPLSADAVETIEALLLQADVGVEAT 263 Query: 64 QKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGV 119 +I+ +L K R Q + Y L + PL + + R +V LV GV Sbjct: 264 DRILTQLQAKLRQEALPPEQAIAYLKQLLQQLLDQPLETSGRYILAPEKGRLNVWLVCGV 323 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178 NGVGKTT IGKL+ + +G + ++AA DTFR+AA++Q+K+W DR+ D + + +D Sbjct: 324 NGVGKTTTIGKLAHLATKSGYRCLIAAADTFRAAAVEQVKVWGDRSEVDVIANPGQNTDP 383 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A AQA+ ++L++DTAGRL N LM + K+ R++ R P A L VLD Sbjct: 384 AAVVFDAIAAAQARGTELLLVDTAGRLQNKKNLMDELAKVRRIIDRKAPDAIVESLLVLD 443 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 AT GQN LRQ ++F A +G+ +TK+D TA+GG + I ++P+ FLG GE I DL Sbjct: 444 ATQGQNGLRQAQVFAEAAQLSGVALTKLDSTAKGGVALAIAQDLQLPIRFLGAGERIQDL 503 Query: 299 EPFVAKDF 306 PF + +F Sbjct: 504 RPFSSYEF 511 >gi|85057344|ref|YP_456260.1| signal recognition particle, docking protein FtsY [Aster yellows witches'-broom phytoplasma AYWB] gi|84789449|gb|ABC65181.1| signal recognition particle, docking protein FtsY [Aster yellows witches'-broom phytoplasma AYWB] Length = 356 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 85/202 (42%), Positives = 128/202 (63%), Gaps = 6/202 (2%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 ++ P + L GVNGVGKTT IGK+++ + G KV+L A DTFR+ A+ QL+IWA R Sbjct: 143 NNFPQMYLFTGVNGVGKTTTIGKMAEALKQEGKKVLLIAADTFRAGAVAQLQIWAKRVGV 202 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + C + + A++ +E + A+++ D+++ DTAGRL N + LM + K+ RV+ + Sbjct: 203 EVFCKPLPAHPASVIFEGIELAKSQNYDIILCDTAGRLQNKTNLMQELAKINRVIYK--- 259 Query: 228 HAPHSVLQ---VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 H P S LQ VLDATTGQNAL QV++F+ +G I+TK+DGT++GG + I + + Sbjct: 260 HLPASNLQTFLVLDATTGQNALNQVDLFNQATPLSGAILTKLDGTSKGGIVFAIKYLYNL 319 Query: 285 PVYFLGVGEGINDLEPFVAKDF 306 P ++GVGE DL F K + Sbjct: 320 PTKYIGVGEKAQDLITFDVKKY 341 >gi|56751641|ref|YP_172342.1| signal recognition particle subunit SRP54 [Synechococcus elongatus PCC 6301] gi|81301281|ref|YP_401489.1| signal recognition particle-docking protein FtsY [Synechococcus elongatus PCC 7942] gi|56686600|dbj|BAD79822.1| signal recognition particle subunit SRP54 [Synechococcus elongatus PCC 6301] gi|81170162|gb|ABB58502.1| signal recognition particle-docking protein FtsY [Synechococcus elongatus PCC 7942] Length = 518 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 112/308 (36%), Positives = 174/308 (56%), Gaps = 5/308 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++++ E + W+ L +G T L + + L E +E LL+++D+GV Sbjct: 204 EEISIEEIDWLSSLRRGLDKTRRSLVNQLKSAVGQGPLSADAVETIEALLLQADVGVEAT 263 Query: 64 QKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGV 119 +I+ +L K R Q + Y L + PL + + R +V LV GV Sbjct: 264 DRILTQLQAKLRQEALPPEQAIAYLKQLLQQLLDQPLETSGRYILAPEKGRLNVWLVCGV 323 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178 NGVGKTT IGKL+ + +G + ++AA DTFR+AA++Q+K+W DR+ D + + +D Sbjct: 324 NGVGKTTTIGKLAHLATKSGYRCLIAAADTFRAAAVEQVKVWGDRSEVDVIANPGQNTDP 383 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A AQA+ ++L++DTAGRL N LM + K+ R++ R P A L VLD Sbjct: 384 AAVVFDAIAAAQARGTELLLVDTAGRLQNKKNLMDELAKVRRIIDRKAPDAIVESLLVLD 443 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 AT GQN LRQ ++F A +G+ +TK+D TA+GG + I ++P+ FLG GE I DL Sbjct: 444 ATQGQNGLRQAQVFAEAAQLSGVALTKLDSTAKGGVALAIAQDLQLPIRFLGAGERIQDL 503 Query: 299 EPFVAKDF 306 PF + +F Sbjct: 504 RPFSSYEF 511 >gi|78183595|ref|YP_376029.1| cell division transporter substrate-binding protein FtsY [Synechococcus sp. CC9902] gi|78167889|gb|ABB24986.1| signal recognition particle-docking protein FtsY [Synechococcus sp. CC9902] Length = 522 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 113/314 (35%), Positives = 177/314 (56%), Gaps = 14/314 (4%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 E + W+ +L +G T G+ + + L V +ELE LL+R+D GV +++E Sbjct: 212 EEIDWLGRLRRGLEKTRQGFVTGLLENLGDDPLTPEVLDELETLLLRADAGVQATDQVLE 271 Query: 69 EL---LTKRYAKDVSVQRVLYD-----VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 L + + V R L D + I +PL P R ++ L+VGVN Sbjct: 272 ALRQRMNEEVVDPVEGIRFLKDQLRGLLDAPIKASGVPLLAPER----GRLNIWLMVGVN 327 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAA 179 GVGKTT +GKL+ +G ++AA DTFR+AA+ Q+++W +R+ + + +D A Sbjct: 328 GVGKTTTLGKLANLAVRSGYSALIAAADTFRAAAVQQVEVWGERSDVPVISNPSSNADPA 387 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ ++A A++++ D+L++DTAGRL LM + K+ +++ RL P A L VLDA Sbjct: 388 AVVFDAIGAARSRETDLLLVDTAGRLQTKHNLMEELQKVRKIIDRLAPEANVESLLVLDA 447 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 + GQN LRQ F AG TG+++TK+DGTARGG + + +P+ F+G GEGI DL Sbjct: 448 SQGQNGLRQAMAFAKAAGLTGVVVTKLDGTARGGVALAVSSEAGLPIRFIGAGEGIRDLR 507 Query: 300 PFVAKDF-SAVITG 312 PF + +F A++ G Sbjct: 508 PFNSFEFVEALLAG 521 >gi|255322936|ref|ZP_05364074.1| signal recognition particle-docking protein FtsY [Campylobacter showae RM3277] gi|255299998|gb|EET79277.1| signal recognition particle-docking protein FtsY [Campylobacter showae RM3277] Length = 289 Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 98/280 (35%), Positives = 157/280 (56%), Gaps = 10/280 (3%) Query: 28 LKEGITDIISSRRLDDGVREE-LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY 86 L + + I SS+ D + +E LE++L+ +DI + ++++ L + K ++R+L Sbjct: 9 LDKTLAAIRSSKPADKKISKEILEEILLEADIAYEIVEEVLYYLPPQNEVKKDDLKRLLN 68 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 ++ + KPF V L++GVNG GKTT I KL+ + G V+L A Sbjct: 69 TYFIYENEREAKVGKPF---------VELILGVNGAGKTTTIAKLANLYKNEGKSVILGA 119 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 DTFR+ AI+QL+ WA RT V ++ G D +A+A++ A AK +D +I+DTAGRL Sbjct: 120 CDTFRAGAIEQLRQWAIRTDVTIVATQQGHDPSAVAFDTISSAVAKNLDNVILDTAGRLQ 179 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 N + L + K++R+ R APH + +LD T G L Q + F+ + G+I+TK+ Sbjct: 180 NQTNLANELSKIVRIADRAYAGAPHRKILILDGTQGNAGLAQAKAFNDIVSLDGVIITKL 239 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 DGT +GG L + ++P+ ++G GE +NDL F DF Sbjct: 240 DGTPKGGALFGVARELELPILYIGTGETMNDLVKFDPHDF 279 >gi|119025129|ref|YP_908974.1| FtsY signal recognition particle [Bifidobacterium adolescentis ATCC 15703] gi|118764713|dbj|BAF38892.1| FtsY signal recognition particle [Bifidobacterium adolescentis ATCC 15703] Length = 420 Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 111/281 (39%), Positives = 172/281 (61%), Gaps = 13/281 (4%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH 93 +I++ +L + E++ED L+ +D+G ++++VEEL R ++ Q +V + Sbjct: 139 NILAKDQLSEADWEDVEDTLLLADVGAEASEQLVEEL---RNDARIAGQSDPAEVRAALK 195 Query: 94 KMLMPLSKP-------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 L+ L N + +++P VI++VGVNG GKTT GKLS+ + G +VML A Sbjct: 196 DKLLKLVGTDTDRRLNANKEGANKPSVIIMVGVNGTGKTTTAGKLSRLLVSEGKQVMLGA 255 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 DTFR+AA DQL+ W + V S+ G+D A++A+EA +A+ + DVLIIDTAGRL Sbjct: 256 ADTFRAAAADQLETWGAKVGVPVVRSDKDGADPASVAFEASAKAKEENADVLIIDTAGRL 315 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 N + LM +GK+ RV ++ P VL VLDATTGQN + Q ++F G TG++++K Sbjct: 316 QNKANLMDELGKIRRVTEKNLPV--DEVLLVLDATTGQNGMTQAKVFAEAIGITGVVLSK 373 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +DG+A+GG +I + +PV +G+GEG +DL PF + F Sbjct: 374 LDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAPFDPEGF 414 >gi|260435905|ref|ZP_05789875.1| cell division protein FtsY [Synechococcus sp. WH 8109] gi|260413779|gb|EEX07075.1| cell division protein FtsY [Synechococcus sp. WH 8109] Length = 504 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 111/318 (34%), Positives = 180/318 (56%), Gaps = 14/318 (4%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V+ E + W+ +L +G T + + + L V ++LE LL+R+D GV Sbjct: 190 QVSLEEIDWLGRLRRGLEKTRQGFVTSLLENLGDDPLTPEVLDDLETLLLRADAGVQATD 249 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKML--------MPLSKPFNWDFSHRPHVILV 116 ++++ L + + V + + E + +L +PL P R ++ L+ Sbjct: 250 QVLDALRQRMNEEVVDPAEGIRFLKEQLRGLLDAPIQASGVPLLAPER----DRLNIWLM 305 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIG 175 VGVNGVGKTT +GKL+ +G ++AA DTFR+AA+ Q+++W +R+ V + Sbjct: 306 VGVNGVGKTTTLGKLANLAVRSGYSALIAAADTFRAAAVQQVEVWGERSDVPVVSNPSSN 365 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 +D AA+ ++A A+++K D+L++DTAGRL LM + K+ +++ RL P A L Sbjct: 366 ADPAAVVFDAIGAARSRKSDLLLVDTAGRLQTKHNLMEELQKVRKIIDRLAPEAKVESLL 425 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 VLDA+ GQN LRQ F AG TG+++TK+DGTARGG + + +P+ F+G GEGI Sbjct: 426 VLDASQGQNGLRQAMAFAQAAGLTGVVITKLDGTARGGVALAVSSEAGLPIRFIGAGEGI 485 Query: 296 NDLEPFVAKDF-SAVITG 312 DL PF + +F A++ G Sbjct: 486 RDLRPFNSFEFVEALLAG 503 >gi|78211569|ref|YP_380348.1| signal recognition particle-docking protein FtsY [Synechococcus sp. CC9605] gi|78196028|gb|ABB33793.1| signal recognition particle-docking protein FtsY [Synechococcus sp. CC9605] Length = 512 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 111/318 (34%), Positives = 180/318 (56%), Gaps = 14/318 (4%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V+ E + W+ +L +G T + + + L V ++LE LL+R+D GV Sbjct: 198 QVSLEEIDWLGRLRRGLEKTRQGFVTSLLENLGDDPLTPEVLDDLETLLLRADAGVQATD 257 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKML--------MPLSKPFNWDFSHRPHVILV 116 ++++ L + + V + + E + +L +PL P R ++ L+ Sbjct: 258 QVLDALRQRMNEEVVDPAEGIRFLKEQLRGLLDAPIQASGVPLLAPER----DRLNIWLM 313 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIG 175 VGVNGVGKTT +GKL+ +G ++AA DTFR+AA+ Q+++W +R+ V + Sbjct: 314 VGVNGVGKTTTLGKLANLAVRSGYSALIAAADTFRAAAVQQVEVWGERSDVPVVSNPSSN 373 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 +D AA+ ++A A+++K D+L++DTAGRL LM + K+ +++ RL P A L Sbjct: 374 ADPAAVVFDAIGAARSRKSDLLLVDTAGRLQTKHNLMEELQKVRKIIDRLAPEAKVESLL 433 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 VLDA+ GQN LRQ F AG TG+++TK+DGTARGG + + +P+ F+G GEGI Sbjct: 434 VLDASQGQNGLRQAMAFAQAAGLTGVVITKLDGTARGGVALAVSSEAGLPIRFIGAGEGI 493 Query: 296 NDLEPFVAKDF-SAVITG 312 DL PF + +F A++ G Sbjct: 494 RDLRPFNSFEFVEALLAG 511 >gi|72383174|ref|YP_292529.1| signal recognition particle-docking protein FtsY [Prochlorococcus marinus str. NATL2A] gi|72003024|gb|AAZ58826.1| signal recognition particle-docking protein FtsY [Prochlorococcus marinus str. NATL2A] Length = 431 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 174/303 (57%), Gaps = 5/303 (1%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 + + W+ +L +G T + + + L V ++LE LL+R+D GV+ +I+E Sbjct: 121 DDIDWLSRLKQGLEKTRKGFVTDLLEKLGDDPLTPEVLDDLETLLLRADAGVSATDQILE 180 Query: 69 ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP----HVILVVGVNGVGK 124 L TK + V L + E + +L K D ++ ++VGVNGVGK Sbjct: 181 SLRTKLNEEVVEASEGLRFLKEQLVNVLEKPIKDSGADLLSPQKGCLNIWMLVGVNGVGK 240 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAY 183 TT +GKL+ +G M+AA DTFR+AA+ Q+K+W DRT + + +E +D A++ + Sbjct: 241 TTTLGKLASVAKRSGFSAMIAAADTFRAAAVQQVKVWGDRTGVEVIANESKNADPASIVF 300 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A +++K +D+L++DTAGRL + LM + K+ +++ +L P A L VLD++ GQ Sbjct: 301 DAIGASKSKNIDLLLVDTAGRLQTKNNLMEELKKIRKIIDKLAPKANVESLLVLDSSQGQ 360 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 N LRQ F A TG+I+TK+DG+++GG + + K+PV F+G GE I DL PF + Sbjct: 361 NGLRQALAFADSAELTGVILTKLDGSSKGGVAMAVASEAKLPVRFIGAGEKIRDLRPFNS 420 Query: 304 KDF 306 +F Sbjct: 421 FEF 423 >gi|218562818|ref|YP_002344597.1| putative signal recognition particle protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|112360524|emb|CAL35321.1| putative signal recognition particle protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315927266|gb|EFV06611.1| signal recognition particle-docking protein FtsY [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 288 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 96/267 (35%), Positives = 152/267 (56%), Gaps = 13/267 (4%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 LE++L+ +D+ + ++I+ L + K ++RV+ + K N + Sbjct: 31 LEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVM-------GSYFLYEKKETNQE-- 81 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +P V L++GVNG GKTT I KL+ + KV+L A DTFR+ AI+QLK+WA + D Sbjct: 82 -KPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVD 140 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V + G D +A+ ++ +A+AK D +IIDTAGRL N L + K++R+ + Sbjct: 141 IVLTAQGHDPSAVTFDTISKAKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEG 200 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 APH + VLD T G + Q + F+ + G+I+TK+DGTA+GG L I ++P+++ Sbjct: 201 APHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFY 260 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +GVGE + DL+ F A SA + LD Sbjct: 261 VGVGEQMTDLQEFNA---SAYLDTLLD 284 >gi|124024722|ref|YP_001013838.1| signal recognition particle docking protein FtsY [Prochlorococcus marinus str. NATL1A] gi|123959790|gb|ABM74573.1| signal recognition particle docking protein FtsY [Prochlorococcus marinus str. NATL1A] Length = 431 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 174/303 (57%), Gaps = 5/303 (1%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 + + W+ +L +G T + + + L V ++LE LL+R+D GV+ +I+E Sbjct: 121 DDIDWLSRLKQGLEKTRKGFVTDLLEKLGDDPLTPEVLDDLETLLLRADAGVSATDQILE 180 Query: 69 ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP----HVILVVGVNGVGK 124 L TK + V L + E + +L K D ++ ++VGVNGVGK Sbjct: 181 SLRTKLNEEVVEASEGLRFLKEQLVNVLEKPIKDSGADLLSPQKGCLNIWMLVGVNGVGK 240 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAY 183 TT +GKL+ +G M+AA DTFR+AA+ Q+K+W DRT + + +E +D A++ + Sbjct: 241 TTTLGKLASVAKRSGFSAMIAAADTFRAAAVQQVKVWGDRTGVEVIANESKNADPASIVF 300 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A +++K +D+L++DTAGRL + LM + K+ +++ +L P A L VLD++ GQ Sbjct: 301 DAIGASKSKNIDLLLVDTAGRLQTKNNLMEELKKIRKIIDKLAPKANVESLLVLDSSQGQ 360 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 N LRQ F A TG+I+TK+DG+++GG + + K+PV F+G GE I DL PF + Sbjct: 361 NGLRQALAFADSAELTGVILTKLDGSSKGGVAMAVASEAKLPVRFIGAGEKIRDLRPFNS 420 Query: 304 KDF 306 +F Sbjct: 421 FEF 423 >gi|297243129|ref|ZP_06927067.1| signal recognition particle GTPase [Gardnerella vaginalis AMD] gi|296889340|gb|EFH28074.1| signal recognition particle GTPase [Gardnerella vaginalis AMD] Length = 393 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 122/319 (38%), Positives = 187/319 (58%), Gaps = 18/319 (5%) Query: 1 MSNQKVASESL-----SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIR 55 M N++V SE L S I++L + A ++ + +IIS L + E++ED L+ Sbjct: 74 MPNEEVKSELLPESTSSRIKRLRERLAHSANPFGRALFNIISKDHLSEEDWEDVEDTLLM 133 Query: 56 SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWDFS-- 108 +D+G ++++VE+L R ++ DV + L+ + + N D S Sbjct: 134 ADVGSRASEELVEDL---RKDARIAGTSSSEDVHSALRTKLLKIVDEDADRRLNADKSDA 190 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 H P VI++VGVNG GKTT GKL++ VM AA DTFR+AA DQL+ WA S Sbjct: 191 HHPSVIMMVGVNGTGKTTTAGKLARLFIAQKRSVMFAAADTFRAAAADQLETWASAVSVP 250 Query: 169 FV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V + G+D A++A+ A +A+ ++ D+LI+DTAGRL N + LM +GK+ RV+++ P Sbjct: 251 VVRADKDGADPASVAFIAANKAKEEQTDLLIVDTAGRLQNKANLMEELGKIRRVIEKTMP 310 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 VL VLDATTGQN + Q ++F G TG+++TK+DG+A+GG +I + +PV Sbjct: 311 --VDEVLLVLDATTGQNGMSQAKVFAEAIGITGVVLTKLDGSAKGGIVIAVQRELGVPVK 368 Query: 288 FLGVGEGINDLEPFVAKDF 306 +G+GEG +DL PF A+ F Sbjct: 369 LVGLGEGPDDLVPFDAQSF 387 >gi|321309549|ref|YP_004191878.1| signal recognition particle receptor protein FtsY (alpha subunit) [Mycoplasma haemofelis str. Langford 1] gi|319801393|emb|CBY92039.1| signal recognition particle receptor protein FtsY (alpha subunit) [Mycoplasma haemofelis str. Langford 1] Length = 320 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 90/208 (43%), Positives = 127/208 (61%), Gaps = 6/208 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 R +++LVVG NGVGKTT I KL+ + KV+L AGDTFR+ A++QL IWA++ + D Sbjct: 113 RRNIVLVVGSNGVGKTTSIAKLANYFKNEDFKVLLVAGDTFRAGAVEQLNIWAEKLNIDI 172 Query: 170 VC-SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V S D +AL Y A ++ D++I DT+GR HNN L+ + K+ R +K+ DP Sbjct: 173 VNPSRAMEDPSALIYRAL--SEYTDYDLVICDTSGRQHNNKNLLQELNKVHRTIKKFDPS 230 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 +PH L VLD+T GQ++L Q + F + +G+++TKMD RGG + I IPV F Sbjct: 231 SPHESLLVLDSTIGQSSLLQAQQFLDNSEISGIVLTKMDSLTRGGIIFSIREKFGIPVKF 290 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLDY 316 LG GE I+DL F D VI+ D+ Sbjct: 291 LGTGESIDDLYIF---DLEEVISSWFDH 315 >gi|126695347|ref|YP_001090233.1| signal recognition particle docking protein FtsY [Prochlorococcus marinus str. MIT 9301] gi|126542390|gb|ABO16632.1| signal recognition particle docking protein FtsY [Prochlorococcus marinus str. MIT 9301] Length = 439 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 109/315 (34%), Positives = 180/315 (57%), Gaps = 21/315 (6%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +++ + + W+ KL +G T + D + L ++LE LLIR+D+G+ Sbjct: 125 QISIDEIDWLTKLRRGLEETRKGFVTELLDKLGDDPLTPEALDDLETLLIRADVGIDSTD 184 Query: 65 KIVEELLTKRYAK----DVSVQRVLYDVSELIHK--------MLMPLSKPFNWDFSHRPH 112 K++ L TK + + ++ + ++ +I K +L+P N Sbjct: 185 KVISSLRTKLNEEVLGAEAGIKFLKKELKLIIDKPIKSSGTDLLVPQKGKLN-------- 236 Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 V L+VGVNGVGKTT +GKL+ S + K ++AA DTFR+AA++QLK+W DR++ + + + Sbjct: 237 VWLLVGVNGVGKTTTLGKLAYLSSKSNYKTLIAAADTFRAAAVEQLKVWGDRSNVEVISN 296 Query: 173 EI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 + +D AA+ ++A A+ + VD+L++DTAGRL + LM + K+ +++ R P A Sbjct: 297 QSKNADPAAVVFDAINSAKKRNVDLLLVDTAGRLQTKNNLMDELAKIKKIIDRKVPDAIV 356 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 L VLDA+ GQN L+Q + F A +G I+TK+DGT+RGG + + +P+ F+G Sbjct: 357 ESLLVLDASQGQNGLKQAKSFAKSADLSGAIITKLDGTSRGGVSLAVSEEVNLPIRFIGA 416 Query: 292 GEGINDLEPFVAKDF 306 GEGI DL PF + +F Sbjct: 417 GEGIKDLRPFNSYEF 431 >gi|145593846|ref|YP_001158143.1| signal recognition particle-docking protein FtsY [Salinispora tropica CNB-440] gi|145303183|gb|ABP53765.1| signal recognition particle-docking protein FtsY [Salinispora tropica CNB-440] Length = 411 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 115/295 (38%), Positives = 172/295 (58%), Gaps = 9/295 (3%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY---AKDVSVQRVLY 86 +G+ ++S RLD+ EE+ED LI +D+G+ ++IV+ L + + V+ R L Sbjct: 120 KGLLGLLSRDRLDEETWEEIEDSLITADVGIDSTREIVDRLRERTRVLGTRTVAELRALL 179 Query: 87 DVSELIHKMLMPLSKPFNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 +EL++ + L + + P V+LVVGVNG GKTT GK+++ + G V+L Sbjct: 180 -AAELVNALDPELDRALHTAPKDGMPAVLLVVGVNGAGKTTTCGKVARVLVADGRSVILG 238 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 A DTFR+AA DQL+ WA R A+ V G+D A++A++A K+ VD +++DTAGRL Sbjct: 239 AADTFRAAAADQLETWAGRVGAETVRGPEGADPASVAFDAVKRGIETGVDTVLVDTAGRL 298 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 N LM +GK+ RV+++ H P L +LDATTGQN L Q +F TG+ +T Sbjct: 299 QNKIGLMDELGKVKRVVEK---HGPIDETLLILDATTGQNGLEQARVFTEAVDVTGVALT 355 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEE 319 K+DGTA+GG +I + IPV +G+GEG +DL PF F + G G + Sbjct: 356 KLDGTAKGGIVISVQRKLGIPVKLVGLGEGKDDLAPFDPAQFVDALLGAEATGSD 410 >gi|116074286|ref|ZP_01471548.1| signal recognition particle-docking protein FtsY [Synechococcus sp. RS9916] gi|116069591|gb|EAU75343.1| signal recognition particle-docking protein FtsY [Synechococcus sp. RS9916] Length = 550 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 111/317 (35%), Positives = 177/317 (55%), Gaps = 12/317 (3%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V+ E + W+ +L +G T G+ D + L V ++LE LL+R+D GV Sbjct: 236 QVSLEEIDWLSRLRQGLEKTRQGFVTGLLDNLGDDPLTPEVVDDLEALLLRADAGVVATD 295 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD-------FSHRPHVILVV 117 +++E L + + V + + E + +L +P R ++ L+V Sbjct: 296 QVMEALRQRLNEEVVDPSEGIRFLKEQLRNLL---EQPIQASGVELLAPERDRLNIWLMV 352 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-S 176 GVNGVGKTT +GKL+ +G M+AA DTFR+AA+ Q+++W +R+ V + + Sbjct: 353 GVNGVGKTTTLGKLANLAVRSGYSAMIAAADTFRAAAVQQVEVWGERSDVPVVANPTANA 412 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D AA+ ++A A++K D+L++DTAGRL LM + K+ R++ RL P + L V Sbjct: 413 DPAAVVFDAIGAARSKGTDLLLVDTAGRLQTKHNLMEELQKIRRIVDRLAPESKVESLLV 472 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDA+ GQN L+Q F A TG+++TK+DGTARGG + + +P+ F+G GEGI Sbjct: 473 LDASQGQNGLKQAMAFAKAADLTGVVITKLDGTARGGVALAVSSEAGLPIRFIGAGEGIR 532 Query: 297 DLEPFVAKDF-SAVITG 312 DL PF + +F A++ G Sbjct: 533 DLRPFNSFEFVEALLAG 549 >gi|289704692|ref|ZP_06501118.1| signal recognition particle-docking protein FtsY [Micrococcus luteus SK58] gi|289558584|gb|EFD51849.1| signal recognition particle-docking protein FtsY [Micrococcus luteus SK58] Length = 399 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 115/285 (40%), Positives = 172/285 (60%), Gaps = 16/285 (5%) Query: 31 GITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ--RVLYDV 88 G+ ++S R+DD V +E+E+ L+ +D+G ++V+ L + V+V+ R V Sbjct: 115 GLLALLSQDRIDDDVWDEIEETLLMADLGTEPTLELVDRLKAR-----VTVEGTRDPEQV 169 Query: 89 SELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 L+ + L+ + P RP V +VVGVNGVGKTT +GKL++ + V Sbjct: 170 RTLLREELVAMVDPSMDRRLAATRRGERPAVTMVVGVNGVGKTTTVGKLARVLVAEDRTV 229 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDT 201 +L A DTFR+AA +QL W R + V SE G+D A++A+EA + A+ VDV+++DT Sbjct: 230 VLGAADTFRAAAAEQLATWGARVGVETVRSEKEGADPASVAFEAVEHGIAEGVDVVLVDT 289 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AGRL N + LM +GK+ RV+++ VL VLDATTGQN L Q ++F V TG+ Sbjct: 290 AGRLQNKANLMDELGKIKRVIEKQ--AEVDEVLLVLDATTGQNGLTQAKVFAEVVDVTGI 347 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++TK+DGTA+GG +I I +PV +G+GEG +DL PF A+ F Sbjct: 348 VLTKLDGTAKGGIVIAIQRQLGVPVKLIGLGEGPDDLAPFTAEGF 392 >gi|197294840|ref|YP_001799381.1| Signal recognition particle-docking protein [Candidatus Phytoplasma australiense] gi|171854167|emb|CAM12161.1| Signal recognition particle-docking protein [Candidatus Phytoplasma australiense] Length = 331 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 105/301 (34%), Positives = 164/301 (54%), Gaps = 17/301 (5%) Query: 20 GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79 G A T T + ++ +++ + LE++LI SD GV +++ + K Y Sbjct: 21 GLAKTKGNFVNFETLLKEAKNIEESLLSALENILIESDFGVKTTLFLMQSI--KNYLNQS 78 Query: 80 SVQRVLYDVSELIHKML-----------MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 +++ S +I +L P+ + P + L VGVNGVGKTT I Sbjct: 79 NIKEARQLPSIIIKHLLHLYQDSSKQSQTPILNTNSKTTLTDPQMYLFVGVNGVGKTTTI 138 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE--IGSDAAALAYEAF 186 GK++ K+ G KV+L AGDTFR+ A++QLKIW + + + E + +++ +E Sbjct: 139 GKMATKLRQEGKKVLLVAGDTFRAGAVEQLKIWGNWSQTEVFAKEGTLFPSPSSVIFEGL 198 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV-LKRLDPHAPHSVLQVLDATTGQNA 245 + A+ DV++ DTAGRL N + LM + K+ RV LK L+P S L VLDA TGQNA Sbjct: 199 QYAKKNAYDVVLCDTAGRLQNKANLMQELAKIQRVILKHLNPENLQSFL-VLDANTGQNA 257 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QVE+F+ TG I+TK+DGT++GG + I + + + F+G+GE DL F ++ Sbjct: 258 LNQVELFNEAVPLTGAIITKLDGTSKGGIVFAIKHLYNLSIKFIGLGEKPEDLVDFDIQN 317 Query: 306 F 306 + Sbjct: 318 Y 318 >gi|260907263|ref|ZP_05915585.1| signal recognition particle-docking protein FtsY [Brevibacterium linens BL2] Length = 380 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 117/310 (37%), Positives = 182/310 (58%), Gaps = 11/310 (3%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V +E + + +L + A ++ L G+ ++S LD+ EE+ED LI +D+GV Sbjct: 68 EVPTEPANRLVRLRERLAKSNSGLGRGLLSLLSRDNLDESTWEEIEDTLILADVGVDPTT 127 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFS-----HRPHVILVVG 118 ++V+ L R V R +V L+ + L+ L P + + + P V+LVVG Sbjct: 128 ELVDRL---RERVKVLGTREPEEVRGLLREELIKLVDPTMDRELAVSGTGDDPAVMLVVG 184 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNG GKTT +GK+++ + V+L A DTFR+AA +QL W R + V E G+D Sbjct: 185 VNGAGKTTTVGKIARVLVAEDQTVLLGAADTFRAAAAEQLSTWGGRVGVETVRGEEGADP 244 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL--DPHAPHSVLQV 236 A++AY A ++ +++ DV++IDTAGRL N LM +GK+ RV R + H VL V Sbjct: 245 ASVAYSAVERGKSENTDVVLIDTAGRLQNKIGLMDELGKVKRVATRPLGEGHEIDEVLLV 304 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDATTGQN ++Q ++F TG+++TK+DGTA+GG ++ + +PV +G+GEG + Sbjct: 305 LDATTGQNGMQQAKVFAEAVNITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGAD 364 Query: 297 DLEPFVAKDF 306 DL PF A+ F Sbjct: 365 DLAPFTAEGF 374 >gi|118473366|ref|YP_886764.1| signal recognition particle-docking protein FtsY [Mycobacterium smegmatis str. MC2 155] gi|118174653|gb|ABK75549.1| signal recognition particle-docking protein FtsY [Mycobacterium smegmatis str. MC2 155] Length = 491 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 107/266 (40%), Positives = 162/266 (60%), Gaps = 11/266 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---- 102 EE+ED L+ +D+G V + ++ L T+ AK+V R D ++ ++LM +P Sbjct: 225 EEVEDTLLIADLGPVVTESVIGALRTEMAAKNV---RTEADARAVLREVLMAELRPELPR 281 Query: 103 --FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 + +P V+LVVGVNG GKTT +GKL++ + G +V+L A DTFR+AA DQL+ Sbjct: 282 SIRALPHADKPSVLLVVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQT 341 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 W R A+ V G+D A++A++A + DV+++DTAGRLH + LM +GK+ R Sbjct: 342 WGSRVGAEVVRGPEGADPASVAFDAVDHGISAGADVVVVDTAGRLHTKTGLMDELGKVKR 401 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 V+++ A VL VLDAT GQN+L Q ++F V TG+++TK+DGTA+GG + + Sbjct: 402 VVEKR--AAVDEVLLVLDATIGQNSLPQAKVFAEVVDITGVVLTKLDGTAKGGIVFRVQQ 459 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDF 306 +PV +G+GEG +DL PF F Sbjct: 460 ELGVPVKLVGLGEGPDDLAPFEPGAF 485 >gi|193216479|ref|YP_001999721.1| cell division protein [Mycoplasma arthritidis 158L3-1] gi|193001802|gb|ACF07017.1| cell division protein [Mycoplasma arthritidis 158L3-1] Length = 351 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 113/276 (40%), Positives = 170/276 (61%), Gaps = 15/276 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL------- 99 E+LE++LI +DI + IV E + +++ ++ +SE+I L + Sbjct: 78 EDLEEILIMADISARLVTIIVNECKKEVRNENIEDPKL---ISEIIADKLFTIYASNSVV 134 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 N + ++R +VILVVGVNG GKTT I KL+KK+S G KV++AA DTFR+AA++QL+ Sbjct: 135 DTSLNIE-NNRINVILVVGVNGSGKTTSISKLAKKLSSEGKKVLIAAADTFRAAAVEQLE 193 Query: 160 IWADRTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 IWA R D + ++ +D AA+ Y+A +A+ +K DVL+IDTAGRL N LM + K+ Sbjct: 194 IWAKRVGVDIIKPTQNETDPAAVVYKAIDKAKEEKYDVLLIDTAGRLQNKVNLMQELAKI 253 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +VL+ APH L VLDATTGQN + Q ++F TG+++TKMDGT+RGG ++ I Sbjct: 254 NKVLESKIEGAPHESLLVLDATTGQNGIVQAKVFTQATPLTGIVLTKMDGTSRGGIILTI 313 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 + V ++G+GE ++DL F D + I G + Sbjct: 314 KDEIGLNVKYVGLGEKVDDLMEF---DLDSYIYGLM 346 >gi|239917429|ref|YP_002956987.1| signal recognition particle-docking protein FtsY [Micrococcus luteus NCTC 2665] gi|281414081|ref|ZP_06245823.1| signal recognition particle-docking protein FtsY [Micrococcus luteus NCTC 2665] gi|239838636|gb|ACS30433.1| signal recognition particle-docking protein FtsY [Micrococcus luteus NCTC 2665] Length = 393 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 115/285 (40%), Positives = 172/285 (60%), Gaps = 16/285 (5%) Query: 31 GITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ--RVLYDV 88 G+ ++S R+DD V +E+E+ L+ +D+G ++V+ L + V+V+ R V Sbjct: 109 GLLALLSQDRIDDDVWDEIEETLLMADLGTEPTLELVDRLKAR-----VTVEGTRDPEQV 163 Query: 89 SELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 L+ + L+ + P RP V +VVGVNGVGKTT +GKL++ + V Sbjct: 164 RTLLREELVAMVDPSMDRRLAATRRGDRPAVTMVVGVNGVGKTTTVGKLARVLVAEDRTV 223 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDT 201 +L A DTFR+AA +QL W R + V SE G+D A++A+EA + A+ VDV+++DT Sbjct: 224 VLGAADTFRAAAAEQLATWGARVGVETVRSEKEGADPASVAFEAVEHGIAEGVDVVLVDT 283 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AGRL N + LM +GK+ RV+++ VL VLDATTGQN L Q ++F V TG+ Sbjct: 284 AGRLQNKANLMDELGKIKRVIEKQ--AEVDEVLLVLDATTGQNGLTQAKVFAEVVDVTGI 341 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++TK+DGTA+GG +I I +PV +G+GEG +DL PF A+ F Sbjct: 342 VLTKLDGTAKGGIVIAIQRQLGVPVKLIGLGEGPDDLAPFTAEGF 386 >gi|32266089|ref|NP_860121.1| signal recognition particle-docking GTPase FtsY [Helicobacter hepaticus ATCC 51449] gi|32262138|gb|AAP77187.1| signal recognition particle-docking GTPase FtsY [Helicobacter hepaticus ATCC 51449] Length = 293 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 88/208 (42%), Positives = 130/208 (62%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P V L+VGVNG GKTT I KL+ KVMLAAGDTFR+AAI+QLK+W ++ Sbjct: 85 KPLVTLIVGVNGAGKTTTIAKLAHLAQTQNKKVMLAAGDTFRAAAIEQLKLWGEKLQIPV 144 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + ++ D +A+A+++ A AK +D L IDTAGRLHN++ L + K++RV ++ Sbjct: 145 IATQHMHDPSAVAFDSINSAIAKNIDELYIDTAGRLHNHTNLNNELLKIVRVSQKALGDK 204 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P VLD T G +A+ QV +F G+I+TK+DGT++GG L IV IP+ ++ Sbjct: 205 PLRKFLVLDGTQGSSAINQVRIFSKNIDFDGIIITKLDGTSKGGALFSIVNELNIPILYI 264 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLDYG 317 G+GE NDL PF +K++ ++ + G Sbjct: 265 GIGERENDLIPFDSKEYVRILLDSIYQG 292 >gi|311065027|ref|YP_003971753.1| cell division protein FtsY [Bifidobacterium bifidum PRL2010] gi|310867347|gb|ADP36716.1| FtsY Cell division protein [Bifidobacterium bifidum PRL2010] Length = 413 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 117/309 (37%), Positives = 184/309 (59%), Gaps = 13/309 (4%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 V +S S I++L + +S + + +I++ L + E++ED L+ +D+G +++ Sbjct: 104 VPEKSGSRIQRLKAKLSRSSNPFGKALFNILTKDNLSESDWEDVEDTLLLADVGAEASEQ 163 Query: 66 IVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF--SHRPHVILVVG 118 +V EL +T + + D V+ L D ++ + + N D +H+P VI++VG Sbjct: 164 LVGELRRDARITGKASPD-EVRATLRD--NMLDLVGRDTDRRLNVDKPDAHKPGVIIMVG 220 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSD 177 VNG GKTT GKL++ KV++ A DTFR+AA DQL+ W R + V S+ G+D Sbjct: 221 VNGTGKTTTAGKLARLFVSEDKKVVMGAADTFRAAAADQLETWGARVNVPVVRSDKDGAD 280 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 A++A+EA +A+ DVLIIDTAGRL N S LM +GK+ RV ++ P VL VL Sbjct: 281 PASVAFEAAARAKEDDADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLPV--DEVLLVL 338 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DATTGQN + Q ++F G TG++++K+DG+A+GG +I + +PV +G+GEG +D Sbjct: 339 DATTGQNGMAQAKVFAEAIGLTGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDD 398 Query: 298 LEPFVAKDF 306 L PF + F Sbjct: 399 LAPFDPEGF 407 >gi|240047379|ref|YP_002960767.1| Cell division protein ftsY [Mycoplasma conjunctivae HRC/581] gi|239984951|emb|CAT04944.1| Cell division protein ftsY [Mycoplasma conjunctivae] Length = 338 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 107/276 (38%), Positives = 159/276 (57%), Gaps = 27/276 (9%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111 +LI SDI Q I+ EL KR ++ ++ SELI +++ + K + +++R Sbjct: 66 ILIMSDISPDFVQIIISEL--KREVRNQNLTN-----SELIPELI--VDKMYTI-YANRS 115 Query: 112 -------------HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +VILVVGVNG GKTT I K++ K+ G K ++ A DTFR+AA++QL Sbjct: 116 LINTNLNIKDDQINVILVVGVNGSGKTTSISKIAHKLIQEGKKTLIVAADTFRAAAVEQL 175 Query: 159 KIWADRTSADFVCS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 +IWA+R AD + E D ++ Y ++ +K DV+IIDTAGRL N LM + K Sbjct: 176 EIWANRVGADILKPYENEQDPGSVVYRGVQKGIDEKFDVVIIDTAGRLQNKINLMNELKK 235 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + +++ P APH L V+DATTGQN + Q + F V +G+++TKMDGT++GG + Sbjct: 236 INKIISEKIPGAPHESLLVIDATTGQNGVSQAKHFSDVTQISGIVLTKMDGTSKGGIVFS 295 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 I I V +G+GE I+DL+PF D + I G Sbjct: 296 IKDQLDIDVKLVGLGEKIDDLQPF---DLDSFIYGM 328 >gi|330946056|gb|EGH47332.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. pisi str. 1704B] Length = 205 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 88/200 (44%), Positives = 128/200 (64%), Gaps = 1/200 (0%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHK 94 + + +DD + EE+E L+ +D+GV I++ L K K ++ + LY + + Sbjct: 6 LGKKAIDDDLLEEIETRLLTADVGVEATSVIIKSLTQKVARKQLTDAQALYTSLQGELAA 65 Query: 95 MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 ML P+ +P HRP VILVVGVNG GKTT IGKL+KK+ G KVMLAAGDTFR+AA Sbjct: 66 MLKPVEQPLVIKSEHRPFVILVVGVNGAGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAA 125 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 ++QL++W +R + G+D+A++ ++A + A+A+ +DVLI DTAGRLH LM Sbjct: 126 VEQLQVWGERNHIPVIAQHTGADSASVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEE 185 Query: 215 IGKMIRVLKRLDPHAPHSVL 234 + K+ RV+ +LD APH VL Sbjct: 186 LKKVRRVIGKLDADAPHEVL 205 >gi|317010981|gb|ADU84728.1| signal recognition particle receptor [Helicobacter pylori SouthAfrica7] Length = 293 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 95/271 (35%), Positives = 154/271 (56%), Gaps = 6/271 (2%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95 + ++ ++ +EELE++LI DI + + +++ L K + V + + E + Sbjct: 17 VKEKKRENIPKEELEEILIGFDIQYDLIESLLQHLGDLVTPKQLEVALLRFVRGESYY-- 74 Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 K + +P V L+VGVNG GKTT I KL+K K +L AGDTFR+AA+ Sbjct: 75 ----DKTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAV 130 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 QL++W +R + + ++ GSD ++LAY + A AK +D + IDTAGRLHN + L + Sbjct: 131 KQLQLWGERLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNEL 190 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 K+ R ++ AP +LD T G + L Q ++FH G+IMTK+DGT++GG + Sbjct: 191 SKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAI 250 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + ++ K+P+ +LG+GE +DL F + F Sbjct: 251 LSVLYELKLPILYLGMGEKEDDLIAFDEERF 281 >gi|330466278|ref|YP_004404021.1| signal recognition particle-docking protein FtsY [Verrucosispora maris AB-18-032] gi|328809249|gb|AEB43421.1| signal recognition particle-docking protein FtsY [Verrucosispora maris AB-18-032] Length = 396 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 116/293 (39%), Positives = 170/293 (58%), Gaps = 17/293 (5%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDV 88 +G+ ++S RLD+ V EE+ED LI +D+G+ ++IV+ L + R S + + Sbjct: 105 KGLLGLLSRDRLDEDVWEEIEDSLITADVGIDATREIVDRLRERTRVLGTRSAAELRALL 164 Query: 89 SELIHKMLMPLSKPFNWDFSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 + + L P D S R P V+LVVGVNG GKTT GK+++ + G Sbjct: 165 AAELVNALDP-----ELDRSLRTTPKEGVPAVLLVVGVNGAGKTTTCGKIARVLIADGRS 219 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 V+L A DTFR+AA DQL+ WA R A+ V G+D A++A++A ++ VD +++DT Sbjct: 220 VLLGAADTFRAAAADQLETWAGRVGAETVRGPEGADPASVAFDAVRRGIDTGVDTVLVDT 279 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 AGRL N LM +GK+ RV+++ H P L +LDATTGQN L Q +F V TG Sbjct: 280 AGRLQNKVGLMDELGKVKRVVEK---HGPIDETLLILDATTGQNGLEQARVFTEVVNVTG 336 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 +++TK+DGTA+GG +I + IPV +G+GEG +DL PF F + G Sbjct: 337 VVLTKLDGTAKGGIVIAVQRKLGIPVKLVGLGEGPDDLAPFDPAQFVDALLGT 389 >gi|323448576|gb|EGB04473.1| hypothetical protein AURANDRAFT_32555 [Aureococcus anophagefferens] Length = 418 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 119/344 (34%), Positives = 181/344 (52%), Gaps = 39/344 (11%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDII---SSRRLDDGVREELEDLLIRSDIG 59 QK ++L+ + K T G + + + + I + LDD V + LED L+ +DIG Sbjct: 18 EQKAKDDALA-LAKFTAGLEKSRDQFGKDLKAIFGGAAGANLDDTV-DALEDALLSADIG 75 Query: 60 VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH-KMLMPLSKPFNWDFSHRPH---VIL 115 A I+E++ R + + DV+ ++ +M L+K + P VIL Sbjct: 76 AATTTTILEDV---RAVAEARGEYAEADVTAILRGRMAETLTKAGDGALRKAPAGPTVIL 132 Query: 116 VVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 V+G NG+GKTT IGKL++++ + G +V+LAA DTFR+AA+ QL WA R + D V + Sbjct: 133 VIGANGMGKTTTIGKLARRLRVEGGQRVLLAACDTFRAAAVGQLDEWAKRAAVDIVVPDA 192 Query: 175 GSDAAALAY--------------EAFKQ---------AQAKKVDVLIIDTAGRLHNNSIL 211 G ++ + A E+F+ A A DVLI+DT+GRL NN+ L Sbjct: 193 GVESPSAACYKALDVALGVAAVDESFRHSDLADDDVDAPAGPYDVLIVDTSGRLSNNAAL 252 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 + K+ R + + P APH L V+DA G+NA+ + A G +GL +TK+DGTAR Sbjct: 253 NEELKKIRRTIDKRAPGAPHDTLLVVDAAVGRNAVDMARAWQADVGVSGLAVTKLDGTAR 312 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G ++ +V IPV +GVGE ++DL F D A + LD Sbjct: 313 AGFVVSVVEDLGIPVKLVGVGEALDDLRDF---DVDAFLDSLLD 353 >gi|298253255|ref|ZP_06977047.1| signal recognition particle GTPase [Gardnerella vaginalis 5-1] gi|297532650|gb|EFH71536.1| signal recognition particle GTPase [Gardnerella vaginalis 5-1] Length = 393 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 124/319 (38%), Positives = 189/319 (59%), Gaps = 22/319 (6%) Query: 3 NQKVASESL-----SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSD 57 N++V SE L S I++L + A ++ + +IIS L + E++ED L+ +D Sbjct: 76 NEEVKSELLPESTSSRIKRLRERLAHSANPFGRALFNIISKDHLSEEDWEDVEDTLLMAD 135 Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWDFS--HR 110 +G ++++VE+L R ++ DV + L+ + + N D S H Sbjct: 136 VGSRASEELVEDL---RKDARIAGTSNSEDVHSALRTKLLKIVDEDADRRLNVDKSNAHH 192 Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VI++VGVNG GKTT GKL++ VM AA DTFR+AA DQL+ WA S V Sbjct: 193 PSVIMMVGVNGTGKTTTAGKLARLFIAKKRSVMFAAADTFRAAAADQLETWASAVSVPVV 252 Query: 171 -CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 ++ G+D A++A+ A +A+ ++ D+LI+DTAGRL N + LM +GK+ RV+++ P Sbjct: 253 RANKDGADPASVAFIAANKAKEEQTDLLIVDTAGRLQNKANLMEELGKIRRVIEKTMP-- 310 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK--IPVY 287 VL VLDATTGQN + Q ++F G TG+++TK+DG+A+GG I I V H+ +PV Sbjct: 311 VDEVLLVLDATTGQNGMSQAKVFAEAIGITGVVLTKLDGSAKGG--IVIAVQHELGVPVK 368 Query: 288 FLGVGEGINDLEPFVAKDF 306 +G+GEG +DL PF A+ F Sbjct: 369 LVGLGEGPDDLVPFDAQSF 387 >gi|87301562|ref|ZP_01084402.1| signal recognition particle-docking protein FtsY [Synechococcus sp. WH 5701] gi|87283779|gb|EAQ75733.1| signal recognition particle-docking protein FtsY [Synechococcus sp. WH 5701] Length = 532 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 108/307 (35%), Positives = 175/307 (57%), Gaps = 5/307 (1%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V+ E + W+ +L +G T L + D + L V ++LE L+R+D+GV Sbjct: 219 QVSLEEIDWLSRLRRGMEKTRRGLVTQLLDSLGDDPLTPEVLDDLETTLLRADVGVQATD 278 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSH---RPHVILVVGVN 120 ++E L + + V L + E + +L P+ + R +V L+VGVN Sbjct: 279 HVLEALRRRLNEEVVEPAEGLRFLKEQLRGLLETPIEASGELLLAPQRDRLNVWLLVGVN 338 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179 GVGKTT +GKL+ +G ++AA DTFR+AA+ Q+ +W +R+ + + +D A Sbjct: 339 GVGKTTTLGKLANLAVRSGYSCLIAAADTFRAAAVQQVTVWGERSGVPVIANPSANADPA 398 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ Y+A A +K ++++++DTAGRL + LM + K+ R++ +L P A L VLDA Sbjct: 399 AVVYDAIGAAHSKGIELVLVDTAGRLQTKNNLMEELSKVRRIVDKLAPEAVVESLLVLDA 458 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 + GQN LRQ F + AG TG+++TK+DG+ARGG + + +P+ F+G GEGI DL Sbjct: 459 SQGQNGLRQAMAFASAAGLTGVVLTKLDGSARGGVALAVASEAGLPIRFIGAGEGIRDLR 518 Query: 300 PFVAKDF 306 PF + +F Sbjct: 519 PFNSFEF 525 >gi|261338450|ref|ZP_05966334.1| signal recognition particle FtsY [Bifidobacterium gallicum DSM 20093] gi|270276435|gb|EFA22289.1| signal recognition particle FtsY [Bifidobacterium gallicum DSM 20093] Length = 439 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 120/313 (38%), Positives = 186/313 (59%), Gaps = 18/313 (5%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S + +L + + ++ + + +I++ L + E++ED L+ +D+G ++ +VEEL Sbjct: 136 SRLERLRERLSKSANPFGKALFNILAKDHLTEADWEDVEDTLLMADVGAEASEHLVEEL- 194 Query: 72 TKRYAK-----DVS-VQRVLYDVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVG 123 +R A+ D S V+ L S+L+ + + + N D + +P VI++VGVNG G Sbjct: 195 -RRDARVTGTADASEVRNALR--SQLLELVGTDVDRRLNADKPDADKPSVIIMVGVNGTG 251 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALA 182 KTT GKL++ +V+L A DTFR+AA DQL+ W + V SE G+D A++A Sbjct: 252 KTTTAGKLARLFVSQDKQVLLGAADTFRAAAADQLETWGAKVGVPIVRSERDGADPASVA 311 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 +EA +A+ DVLIIDTAGRL N + LM +GK+ RV ++ P VL VLDATTG Sbjct: 312 FEASAKAKELDTDVLIIDTAGRLQNKANLMDELGKIRRVTEKNLPV--DEVLLVLDATTG 369 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QN + Q ++F G TG+++TK+DG+A+GG +I + +PV +GVGEG +DL PF Sbjct: 370 QNGMAQAKVFAQAIGITGVVLTKLDGSAKGGIVIAVQKELGVPVKLVGVGEGPDDLAPFD 429 Query: 303 AKDFSAVITGCLD 315 + F + G LD Sbjct: 430 PESF---VDGILD 439 >gi|317968465|ref|ZP_07969855.1| signal recognition particle-docking protein FtsY [Synechococcus sp. CB0205] Length = 488 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 109/306 (35%), Positives = 174/306 (56%), Gaps = 5/306 (1%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 ++ E + W+ +L +G T + D + L V ++LE LL+R+D+GV + Sbjct: 176 ISLEEIDWLGRLRRGMEKTRQGFVTQLLDTLGDDPLTPEVLDDLESLLLRADVGVQATDQ 235 Query: 66 IVEELLTKRYAKDVSVQ---RVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 ++E L + + V + R L D + L+ + + R +V L+VGVNG Sbjct: 236 VLEALRKRLNEEVVEPEEGIRFLKDQLKGLLDQPIKASGTALLAPERGRLNVWLMVGVNG 295 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180 VGKTT +GKL+ +G ++AA DTFR+AA+ Q+++W +R+ V + +D AA Sbjct: 296 VGKTTTLGKLANLAIRSGYSCLIAAADTFRAAAVQQVQVWGERSGVTVVSNPSANADPAA 355 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + Y+A AQAK D++++DTAGRL LM + K+ R++ +L P A L VLDA+ Sbjct: 356 VVYDAIGAAQAKGTDLVLVDTAGRLQTKHNLMEELTKVRRIVDKLAPDAEVQSLLVLDAS 415 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQN L+Q F AG TG+++TK+DG++RGG + + +P+ F+G GEGI DL P Sbjct: 416 QGQNGLKQAMAFAQAAGLTGVVLTKLDGSSRGGVALAVSSEAGLPIRFIGAGEGIRDLRP 475 Query: 301 FVAKDF 306 F + +F Sbjct: 476 FNSFEF 481 >gi|254431069|ref|ZP_05044772.1| signal recognition particle-docking protein FtsY [Cyanobium sp. PCC 7001] gi|197625522|gb|EDY38081.1| signal recognition particle-docking protein FtsY [Cyanobium sp. PCC 7001] Length = 529 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 109/320 (34%), Positives = 187/320 (58%), Gaps = 18/320 (5%) Query: 5 KVASESLSWIRKLTKGFASTS----LKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIG 59 +V+ E + W+ +L +G T +L E + D +S +LDD LE L+R+D+G Sbjct: 216 EVSLEEIDWLGRLRQGLEKTRQGFVTQLLEKLGDDPLSPEQLDD-----LETTLLRADVG 270 Query: 60 VAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114 V ++++ L +R ++V ++ + + +++ + + + P R +V Sbjct: 271 VTATDQVLD-ALRERLNREVVDPAEGIRFLKEQLRDILEQPIQTSASPLLAPERGRLNVW 329 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-E 173 L+VGVNGVGKTT +GKL+ +G ++AA DTFR+AA+ Q+++W +R+ + + Sbjct: 330 LLVGVNGVGKTTTLGKLANLAVRSGYSCLIAAADTFRAAAVQQVQVWGERSGVPVIANPS 389 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +D AA+ Y+A A+A+ +++++DTAGRL LM + K+ R++ +L P A Sbjct: 390 ANADPAAVVYDALGAAKAQGTELVLVDTAGRLQTKHNLMEELAKVRRIVDKLAPDAAVES 449 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L VLD++ GQN LRQ F + AG TG+++TK+DG+ARGG + + +P+ F+G GE Sbjct: 450 LLVLDSSQGQNGLRQAMAFASAAGLTGVVITKLDGSARGGVALAVASEANLPIRFIGAGE 509 Query: 294 GINDLEPFVAKDF-SAVITG 312 GI DL PF + +F A++ G Sbjct: 510 GIRDLRPFNSFEFVEALLAG 529 >gi|154173993|ref|YP_001408112.1| signal recognition particle-docking protein FtsY [Campylobacter curvus 525.92] gi|112803142|gb|EAU00486.1| signal recognition particle-docking protein FtsY [Campylobacter curvus 525.92] Length = 288 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 93/274 (33%), Positives = 159/274 (58%), Gaps = 13/274 (4%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL--YDVSELI 92 I+S++ +E LE++L+ +D+ + ++I+ L + + ++RV+ Y + E Sbjct: 16 ILSAKTSKKITKENLEEILLEADVTYEIVEEIIYYLPPQNDVRREDLRRVMSSYFIYEKE 75 Query: 93 HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 K+ +P +P V L++GVNG GKTT I KL+ +AG V+L A DTFR+ Sbjct: 76 RKI-----EP------DKPFVDLILGVNGAGKTTTIAKLANLYKNAGKSVILGACDTFRA 124 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AI+QL+ W+ R + V ++ G D +A+A++ A AK +D +I+DTAGRL N + L Sbjct: 125 GAIEQLRQWSLRLNVPIVATQQGHDPSAVAFDTISSAVAKNIDRVILDTAGRLQNQTNLA 184 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + K++R+ ++ APH + +LD T G + Q + F+ + G+I+TK+DGTA+G Sbjct: 185 NELSKIVRISQKAYERAPHRKILILDGTQGNAGVAQAKAFNEIVELDGVIITKLDGTAKG 244 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G L + ++P+ ++GVGE + DL F +F Sbjct: 245 GALFGVARELELPILYIGVGEKMEDLVKFDPDEF 278 >gi|46198376|ref|YP_004043.1| signal recognition particle receptor FtsY [Thermus thermophilus HB27] gi|46195998|gb|AAS80416.1| signal recognition particle receptor FtsY [Thermus thermophilus HB27] Length = 304 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 114/275 (41%), Positives = 157/275 (57%), Gaps = 21/275 (7%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLT--KRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102 V EELE L+ +D+GVA +++++E+ +R K+V V E + +ML P + Sbjct: 31 VLEELEMALLAADVGVAATEELLKEVRASGRRDLKEV--------VKEKLVQMLEPDERR 82 Query: 103 FNW-DFSHRPHVILVVGVNG----------VGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 RP + V G VGKTT I KL + G KV+ AGDTFR Sbjct: 83 ATLRKLGFRPQKLRPVEPQGHVVMVVGVNGVGKTTTIAKLGRLYQGLGKKVLFCAGDTFR 142 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 +A QL W R + G+D AALA++A K +A+ +D+L +DTAGRLH L Sbjct: 143 AAGGAQLAEWGKRLGIPVIQGPEGADPAALAFDAAKARRARGLDLLFVDTAGRLHTKQGL 202 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M + K+ R + + DP P V VLDA TGQN L Q + FH G TG+I+TK+DGTA+ Sbjct: 203 MEELKKVKRAIAKADPGEPGEVWLVLDAVTGQNGLEQAKRFHEAVGLTGVIVTKLDGTAK 262 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 GG L+PIV T K+P+ F+GVGEG +DL+PF A+ F Sbjct: 263 GGVLVPIVRTLKVPIRFIGVGEGPDDLQPFDAEAF 297 >gi|108563173|ref|YP_627489.1| signal recognition particle receptor [Helicobacter pylori HPAG1] gi|107836946|gb|ABF84815.1| signal recognition particle receptor [Helicobacter pylori HPAG1] Length = 293 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 98/272 (36%), Positives = 153/272 (56%), Gaps = 11/272 (4%) Query: 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 +EELE++LI DI + + +++ L K + V + + E + K Sbjct: 27 KEELEEILIGFDIQYDLIESLLKHLGDLVTPKQLEVALLRFVRGESYY------DKTRLK 80 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + +P V L+VGVNG GKTT I KL+K K +L AGDTFR+AA+ QL++W ++ Sbjct: 81 TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKTLLGAGDTFRAAAVKQLQLWGEKL 140 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + ++ GSD ++LAY + A AK +D + IDTAGRLHN + L + K+ R ++ Sbjct: 141 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 200 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 AP +LD T G + L Q ++FH G+IMTK+DGT++GG ++ ++ K+P Sbjct: 201 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 260 Query: 286 VYFLGVGEGINDL-----EPFVAKDFSAVITG 312 + +LG+GE +DL E F+A AV G Sbjct: 261 ILYLGMGEKEDDLIAFDEERFIADLVDAVFVG 292 >gi|55980405|ref|YP_143702.1| signal recognition particle-docking protein FtsY [Thermus thermophilus HB8] gi|55771818|dbj|BAD70259.1| signal recognition particle-docking protein FtsY [Thermus thermophilus HB8] Length = 304 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 114/275 (41%), Positives = 157/275 (57%), Gaps = 21/275 (7%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLT--KRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102 V EELE L+ +D+GVA +++++E+ +R K+V V E + +ML P + Sbjct: 31 VLEELEMALLAADVGVAATEELLKEVRASGRRDLKEV--------VKEKLVQMLEPDERR 82 Query: 103 FNW-DFSHRPHVILVVGVNG----------VGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 RP + V G VGKTT I KL + G KV+ AGDTFR Sbjct: 83 ATLRKLGFRPQKLRPVEPQGHVVMVVGVNGVGKTTTIAKLGRLYQGLGKKVLFCAGDTFR 142 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 +A QL W R + G+D AALA++A K +A+ +D+L +DTAGRLH L Sbjct: 143 AAGGAQLAEWGKRLGIPVIQGPEGADPAALAFDAAKARRARGLDLLFVDTAGRLHTKQGL 202 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M + K+ R + + DP P V VLDA TGQN L Q + FH G TG+I+TK+DGTA+ Sbjct: 203 MEELKKVKRAIAKADPGEPGEVWLVLDAVTGQNGLEQAKRFHEAVGLTGVIVTKLDGTAK 262 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 GG L+PIV T K+P+ F+GVGEG +DL+PF A+ F Sbjct: 263 GGVLVPIVRTLKVPIRFIGVGEGPDDLQPFDAEAF 297 >gi|315586568|gb|ADU40949.1| cell division protein FtsY [Helicobacter pylori 35A] Length = 297 Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 95/261 (36%), Positives = 148/261 (56%), Gaps = 6/261 (2%) Query: 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 +EELE++LI DI + + ++ L K + V + + E + K Sbjct: 31 KEELEEILIGFDIQYDLIESLLNHLGDSITPKQLEVALLRFVRGESYY------DKTRLK 84 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + RP V L+VGVNG GKTT I KL+K K +L AGDTFR+AA+ QL++W ++ Sbjct: 85 TITTRPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKL 144 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + ++ GSD ++LAY + A AK +D + IDTAGRLHN + L + K+ R ++ Sbjct: 145 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 204 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 AP +LD T G + L Q ++FH G+IMTK+DGT++GG ++ ++ K+P Sbjct: 205 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 264 Query: 286 VYFLGVGEGINDLEPFVAKDF 306 + +LG+GE +DL F + F Sbjct: 265 ILYLGMGEKEDDLIAFDEERF 285 >gi|260655328|ref|ZP_05860816.1| signal recognition particle-docking protein FtsY [Jonquetella anthropi E3_33 E1] gi|260629776|gb|EEX47970.1| signal recognition particle-docking protein FtsY [Jonquetella anthropi E3_33 E1] Length = 309 Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 107/281 (38%), Positives = 157/281 (55%), Gaps = 15/281 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 ++LE+ LI D GV A+++V L K + ++R + ++ LS D Sbjct: 36 DDLEETLIVGDAGVDTAEELVASL--KETGRREGIKRADELLEAFARLLVARLSAA---D 90 Query: 107 FSHRP-------HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 + +P +V ++VGVNG GKTT GKL+ + AG KVM+AA DTFR+ A +QL+ Sbjct: 91 GTGQPLRLASGLNVCVMVGVNGSGKTTTAGKLACQFVKAGHKVMMAASDTFRAGASEQLQ 150 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 +W +R V + GSD A++A++ AQA +LI+DTAGRL + LMA +GK+ Sbjct: 151 VWGERCGVRVVAQKPGSDPASVAFDGITAAQAAGARLLIVDTAGRLQSRQNLMAELGKIW 210 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 RV++R L VLDA GQNA Q ++F VA TG ++ K D TA+GG ++ I Sbjct: 211 RVVERAVGKDHVETLIVLDAMIGQNAFVQADLFGQVAPLTGAVLAKYDNTAKGGVVLSIT 270 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEK 320 +PV ++GVGEG+ DL F + F + G L EK Sbjct: 271 EKLGVPVRYVGVGEGVADLALFEPESF---VRGLLGLAGEK 308 >gi|323342051|ref|ZP_08082284.1| cell division protein FtsY [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464476|gb|EFY09669.1| cell division protein FtsY [Erysipelothrix rhusiopathiae ATCC 19414] Length = 319 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 112/300 (37%), Positives = 159/300 (53%), Gaps = 6/300 (2%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 SN+K E + L AS KLK+ T + DD + L +LI+SD+ + Sbjct: 10 SNKKDQKEQELYSTGLDSTKASFGNKLKQMFT---GKPKFDDAWYDHLLAVLIQSDVSLK 66 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 AQKI++ K +S + L + E+I + +P+ + R + ILVVGVNG Sbjct: 67 SAQKIIK-TFRKNVKASMSEEEALETLVEVILRQYGDNLEPYAIE-PGRLNAILVVGVNG 124 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT KL+ G KV+L GDTFR+A +QLK+WAD DFV + D A++ Sbjct: 125 SGKTTTCAKLAYNYQQEGYKVLLVGGDTFRAAGSNQLKVWADEIGVDFVGGKDNQDPASV 184 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 +A + A+ DV+I D+AGRL N LM + KM RVL+R H+ L V+D T Sbjct: 185 YVDAARYAKEHDFDVMICDSAGRLQNKVNLMKELEKMKRVLEREVGSIDHTYL-VIDGNT 243 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQN L Q + F V LI+TK+DG+ +GG L+ I + V +G+GE + DL F Sbjct: 244 GQNGLSQAKTFTEVTPVNSLIVTKLDGSPKGGVLLSIKDELDLKVSHIGLGETVGDLRAF 303 >gi|254779261|ref|YP_003057366.1| putative signal recognition particule receptor FtsY [Helicobacter pylori B38] gi|254001172|emb|CAX29135.1| Putative signal recognition particule receptor FtsY [Helicobacter pylori B38] Length = 293 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 95/271 (35%), Positives = 154/271 (56%), Gaps = 6/271 (2%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95 I ++ ++ +EELE++LI DI + + +++ L K + V + + E + Sbjct: 17 IKEKKRENVPKEELEEILIGFDIQYDLIESLLKHLGDLVTPKQLEVALLRFVRGESYY-- 74 Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 K + +P V L+VGVNG GKTT I KL+K K +L AGDTFR+AA+ Sbjct: 75 ----DKTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAV 130 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 QL++W ++ + + ++ GSD ++LAY + A AK +D + IDTAGRLHN + L + Sbjct: 131 KQLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNEL 190 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 K+ R ++ AP +LD T G + L Q ++FH G+IMTK+DGT++GG + Sbjct: 191 SKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAI 250 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + ++ K+P+ +LG+GE +DL F + F Sbjct: 251 LSVLYELKLPILYLGMGEKEDDLIAFDEERF 281 >gi|308063451|gb|ADO05338.1| cell division protein (ftsY) [Helicobacter pylori Sat464] Length = 293 Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 95/261 (36%), Positives = 149/261 (57%), Gaps = 6/261 (2%) Query: 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 +EELE++LI DI + + ++ L K + V + + E + K Sbjct: 27 KEELEEILIGFDIQYDLIESLLNHLGDLITPKQLEVALLRFVRGESYY------DKTRLK 80 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + +P V L+VGVNG GKTT I KL+K KV+L AGDTFR+AA+ QL++W ++ Sbjct: 81 TITTKPLVHLIVGVNGTGKTTTIAKLAKLSLKQHKKVLLGAGDTFRAAAVKQLQLWGEKL 140 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + ++ GSD ++LAY + A AK +D + IDTAGRLHN + L + K+ R ++ Sbjct: 141 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 200 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 AP +LD T G + L Q ++FH G+IMTK+DGT++GG ++ ++ K+P Sbjct: 201 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 260 Query: 286 VYFLGVGEGINDLEPFVAKDF 306 + +LG+GE +DL F + F Sbjct: 261 ILYLGMGEKEDDLIAFDEERF 281 >gi|183602316|ref|ZP_02963683.1| FtsY signal recognition particle [Bifidobacterium animalis subsp. lactis HN019] gi|219682672|ref|YP_002469055.1| signal recognition particle-docking protein FtsY [Bifidobacterium animalis subsp. lactis AD011] gi|241190250|ref|YP_002967644.1| FtsY signal recognition particle [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195656|ref|YP_002969211.1| FtsY signal recognition particle [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218530|gb|EDT89174.1| FtsY signal recognition particle [Bifidobacterium animalis subsp. lactis HN019] gi|219620322|gb|ACL28479.1| signal recognition particle-docking protein FtsY [Bifidobacterium animalis subsp. lactis AD011] gi|240248642|gb|ACS45582.1| FtsY signal recognition particle [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250210|gb|ACS47149.1| FtsY signal recognition particle [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793237|gb|ADG32772.1| FtsY signal recognition particle [Bifidobacterium animalis subsp. lactis V9] Length = 466 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 115/306 (37%), Positives = 181/306 (59%), Gaps = 7/306 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S +++L + + +S + + +I++ +L + E++ED L+ +D+G ++++V++L Sbjct: 162 SRLQRLRERLSKSSNPFGKALFNILAKDQLSEADWEDVEDTLLLADVGAEASEELVDKLR 221 Query: 72 TKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTV 127 T S R L D SEL+ + + + + + +P VI++VGVNG GKTT Sbjct: 222 TDARVTGESDPRQLRDALRSELLALVGPDMDRTLEAEKPDAKKPSVIIMVGVNGTGKTTT 281 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAYEAF 186 GKL++ V+L A DTFR+AA DQL+ W + V S+ G+D A++A+EA Sbjct: 282 AGKLARLFVSEDKTVLLGAADTFRAAAADQLETWGAKVDVPVVRSDREGADPASVAFEAS 341 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 +A+ DVLIIDTAGRL N + LM +GK+ RV ++ P VL VLDATTGQN + Sbjct: 342 AKAKELGTDVLIIDTAGRLQNKANLMDELGKIRRVAEKNLPV--DEVLLVLDATTGQNGM 399 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++F G TG+++TK+DG+A+GG +I + +PV +GVGEG +DL PF + F Sbjct: 400 AQAKVFAEAIGITGVVLTKLDGSAKGGIVISVQKELGVPVKLVGVGEGPDDLAPFDPESF 459 Query: 307 SAVITG 312 I G Sbjct: 460 VDGILG 465 >gi|159902550|ref|YP_001549894.1| signal recognition particle docking protein FtsY [Prochlorococcus marinus str. MIT 9211] gi|159887726|gb|ABX07940.1| signal recognition particle docking protein FtsY [Prochlorococcus marinus str. MIT 9211] Length = 444 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 108/314 (34%), Positives = 175/314 (55%), Gaps = 21/314 (6%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 ++ E + W+++L +G T + + L V ++LE LL+R+D+GV + Sbjct: 131 ISLEDIDWLKRLRQGLEKTRKGFVTDLLEKFGDDPLTPEVLDDLEALLLRADVGVNATDQ 190 Query: 66 IV--------EELLTK----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113 I+ EE+L R+ K Q V + ++L P K N + Sbjct: 191 IITALRRRLNEEVLDSKEGFRFLKQQLCQIVNKPIKNSNQEVLAPKHKSLN--------I 242 Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 L+VGVNGVGKTT +GKL+ +G ++AA DTFR+AA+ Q++IW R+ + +E Sbjct: 243 WLLVGVNGVGKTTTLGKLAHLALRSGYTALIAAADTFRAAAVQQVQIWGRRSGVSVIANE 302 Query: 174 I-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 +D AA+ ++A A++K++++L++DTAGRL + LM + K+ R++ RL P A Sbjct: 303 TPNADPAAIVFDAIGAAKSKEIELLLVDTAGRLQTKNNLMEELAKIRRIIDRLAPEAIVE 362 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 L VLDA+ GQN L Q F A TG+++TK+DG++RGG + K+P+ F+G G Sbjct: 363 SLLVLDASQGQNGLNQAMSFAESANLTGVVITKLDGSSRGGVAFAVASEAKLPIRFIGAG 422 Query: 293 EGINDLEPFVAKDF 306 E + DL+PF + +F Sbjct: 423 ERLQDLKPFNSFEF 436 >gi|289177965|gb|ADC85211.1| FtsY [Bifidobacterium animalis subsp. lactis BB-12] Length = 508 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 115/306 (37%), Positives = 181/306 (59%), Gaps = 7/306 (2%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S +++L + + +S + + +I++ +L + E++ED L+ +D+G ++++V++L Sbjct: 204 SRLQRLRERLSKSSNPFGKALFNILAKDQLSEADWEDVEDTLLLADVGAEASEELVDKLR 263 Query: 72 TKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTV 127 T S R L D SEL+ + + + + + +P VI++VGVNG GKTT Sbjct: 264 TDARVTGESDPRQLRDALRSELLALVGPDMDRTLEAEKPDAKKPSVIIMVGVNGTGKTTT 323 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAF 186 GKL++ V+L A DTFR+AA DQL+ W + V S+ G+D A++A+EA Sbjct: 324 AGKLARLFVSEDKTVLLGAADTFRAAAADQLETWGAKVDVPVVRSDREGADPASVAFEAS 383 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 +A+ DVLIIDTAGRL N + LM +GK+ RV ++ P VL VLDATTGQN + Sbjct: 384 AKAKELGTDVLIIDTAGRLQNKANLMDELGKIRRVAEKNLPV--DEVLLVLDATTGQNGM 441 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++F G TG+++TK+DG+A+GG +I + +PV +GVGEG +DL PF + F Sbjct: 442 AQAKVFAEAIGITGVVLTKLDGSAKGGIVISVQKELGVPVKLVGVGEGPDDLAPFDPESF 501 Query: 307 SAVITG 312 I G Sbjct: 502 VDGILG 507 >gi|210134966|ref|YP_002301405.1| cell division protein FtsY [Helicobacter pylori P12] gi|210132934|gb|ACJ07925.1| cell division protein FtsY [Helicobacter pylori P12] Length = 293 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 94/271 (34%), Positives = 153/271 (56%), Gaps = 6/271 (2%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95 + ++ + +EELE++LI DI + + +++ L K + V + + E + Sbjct: 17 VKEKKRESVSKEELEEILIGFDIQYDLIESLLQHLGDLVTPKQLEVALLRFVRGESYY-- 74 Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 K + +P V L+VGVNG GKTT I KL+K K +L AGDTFR+AA+ Sbjct: 75 ----DKTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAV 130 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 QL++W ++ + + ++ GSD ++LAY + A AK +D + IDTAGRLHN + L + Sbjct: 131 KQLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNEL 190 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 K+ R ++ AP +LD T G + L Q ++FH G+IMTK+DGT++GG + Sbjct: 191 SKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAI 250 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + ++ K+P+ +LG+GE +DL F + F Sbjct: 251 LSVLYELKLPILYLGMGEKEDDLIAFDEERF 281 >gi|288575011|ref|ZP_06393368.1| signal recognition particle-docking protein FtsY [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570752|gb|EFC92309.1| signal recognition particle-docking protein FtsY [Dethiosulfovibrio peptidovorans DSM 11002] Length = 311 Score = 169 bits (427), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 117/318 (36%), Positives = 177/318 (55%), Gaps = 16/318 (5%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV--- 67 +++ + + A+ K EG+ + S + LDD EEL D LI D+GV +++++ Sbjct: 1 MAFFKGIASKLANVREKWSEGVASLFSGK-LDDEFWEELTDRLIAGDVGVELSEELAEEL 59 Query: 68 -----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 E + + A + + +L E + M PLS ++++VGVNG Sbjct: 60 KETSRREGIREPEALLIRFKEILSSRLESVPMMGKPLSPGSGLS------IVVMVGVNGS 113 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT GKL++++ G KV+LAA DTFR+AA +QL +W +R + GSDA A+A Sbjct: 114 GKTTTTGKLAQQLVSQGNKVVLAAADTFRAAASEQLHVWGERIGIRVISQHQGSDAGAVA 173 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A A+A DV+I+DTAGRL LM + K+ RV+ + P L VLDA G Sbjct: 174 YDAINAAKASGADVVIVDTAGRLQAKHNLMEELRKVYRVITKEVPAERIESLLVLDAVMG 233 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA RQ E+F+ V TG+++ K D TA+GG ++ I K+P+ ++G+GE I DL PFV Sbjct: 234 QNAFRQAEVFNEVTPLTGVVLAKYDNTAKGGIVLAIADKLKLPIRYVGLGEAIEDLAPFV 293 Query: 303 AKDF-SAVITGCLDYGEE 319 +F A++ GEE Sbjct: 294 PSEFVDALLRSSDRSGEE 311 >gi|217032167|ref|ZP_03437666.1| hypothetical protein HPB128_186g33 [Helicobacter pylori B128] gi|298736465|ref|YP_003728991.1| signal recognition particle receptor [Helicobacter pylori B8] gi|216946157|gb|EEC24766.1| hypothetical protein HPB128_186g33 [Helicobacter pylori B128] gi|298355655|emb|CBI66527.1| signal recognition particle receptor [Helicobacter pylori B8] Length = 297 Score = 168 bits (426), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 95/263 (36%), Positives = 150/263 (57%), Gaps = 6/263 (2%) Query: 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 +EELE++LI DI + + +++ L K + V + + E + K Sbjct: 31 KEELEEILIGFDIQYDLIESLLKHLGDLVTPKQLEVALLRFVRGESYY------DKTRLK 84 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + +P V L+VGVNG GKTT I KL+K K +L AGDTFR+AA+ QL++W ++ Sbjct: 85 TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKTLLGAGDTFRAAAVKQLQLWGEKL 144 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + ++ GSD ++LAY + A AK +D + IDTAGRLHN + L + K+ R ++ Sbjct: 145 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 204 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 AP +LD T G + L Q ++FH G+IMTK+DGT++GG ++ ++ K+P Sbjct: 205 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 264 Query: 286 VYFLGVGEGINDLEPFVAKDFSA 308 + +LG+GE +DL F + F A Sbjct: 265 ILYLGMGEKEDDLIAFDEERFIA 287 >gi|208434674|ref|YP_002266340.1| signal recognition particle receptor [Helicobacter pylori G27] gi|208432603|gb|ACI27474.1| signal recognition particle receptor [Helicobacter pylori G27] Length = 293 Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 96/278 (34%), Positives = 157/278 (56%), Gaps = 20/278 (7%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQRVL-----YDV 88 + ++ ++ +EELE++LI DI + + +++ L L +V++ R + YD Sbjct: 17 VKEKKRENIPKEELEEILIGFDIQYDLIENLLKHLGDLVTPKQLEVALLRFVRGESYYDK 76 Query: 89 SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 + L + +P V L+VGVNG GKTT I KL+K K +L AGD Sbjct: 77 TRL-------------KTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGD 123 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+AA+ QL++W ++ + + ++ GSD ++LAY + A AK +D + IDTAGRLHN Sbjct: 124 TFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQ 183 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 + L + K+ R ++ AP +LD T G + L Q ++FH G+IMTK+DG Sbjct: 184 TNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDG 243 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 T++GG ++ ++ K+P+ +LG+GE +DL F + F Sbjct: 244 TSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERF 281 >gi|283782585|ref|YP_003373339.1| signal recognition particle-docking protein FtsY [Gardnerella vaginalis 409-05] gi|283441393|gb|ADB13859.1| signal recognition particle-docking protein FtsY [Gardnerella vaginalis 409-05] Length = 393 Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 121/317 (38%), Positives = 186/317 (58%), Gaps = 18/317 (5%) Query: 3 NQKVASESL-----SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSD 57 N++V SE L S I++L A ++ + +IIS L + E++ED L+ +D Sbjct: 76 NEEVKSELLPESTSSRIKRLRGRLAHSANPFGRALFNIISKDHLSEEDWEDVEDTLLMAD 135 Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWDFS--HR 110 +G ++++VE+L R ++ DV + L+ + + N D S H Sbjct: 136 VGSRASEELVEDL---RKDARIAGTSNSEDVHSALRTKLLKIVDEDADRRLNVDKSDAHH 192 Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VI++VGVNG GKTT GKL++ VM AA DTFR+AA DQL+ WA S V Sbjct: 193 PSVIMMVGVNGTGKTTTAGKLARLFIAKKRSVMFAAADTFRAAAADQLETWASAVSVPVV 252 Query: 171 -CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 ++ G+D A++A+ A +A+ ++ D+LI+DTAGRL N + LM +GK+ RV+++ P Sbjct: 253 RANKDGADPASVAFIAANKAKEEQTDLLIVDTAGRLQNKANLMEELGKIRRVIEKTMP-- 310 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 VL VLDATTGQN + Q ++F G TG+++TK+DG+A+GG +I + +PV + Sbjct: 311 VDEVLLVLDATTGQNGMSQAKVFAEAIGITGVVLTKLDGSAKGGIVIAVQRELGVPVKLV 370 Query: 290 GVGEGINDLEPFVAKDF 306 G+GEG +DL PF A+ F Sbjct: 371 GLGEGPDDLVPFDAQSF 387 >gi|261839418|gb|ACX99183.1| cell division protein (ftsY) [Helicobacter pylori 52] Length = 297 Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 95/263 (36%), Positives = 150/263 (57%), Gaps = 10/263 (3%) Query: 46 REELEDLLIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103 +EELE++LI DI + + ++ L L +V++ R + S L ++ Sbjct: 31 KEELEEILIGFDIQYDLIESLLNHLGDLVTPKQLEVALLRFVRGESYYDKTRLKTITT-- 88 Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 +P V L+VGVNG GKTT I KL+K K +L AGDTFR+AA+ QL++W + Sbjct: 89 ------KPLVYLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGE 142 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + + + ++ GSD ++LAY + A AK +D + IDTAGRLHN + L + K+ R Sbjct: 143 KLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCS 202 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 ++ AP +LD T G + L Q ++FH G+IMTK+DGT++GG ++ ++ K Sbjct: 203 KVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELK 262 Query: 284 IPVYFLGVGEGINDLEPFVAKDF 306 +P+ +LG+GE +DL F + F Sbjct: 263 LPIIYLGMGEKEDDLIAFDEERF 285 >gi|223041283|ref|ZP_03611526.1| signal recognition particle-docking protein FtsY [Campylobacter rectus RM3267] gi|222877450|gb|EEF12588.1| signal recognition particle-docking protein FtsY [Campylobacter rectus RM3267] Length = 289 Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 98/282 (34%), Positives = 158/282 (56%), Gaps = 14/282 (4%) Query: 28 LKEGITDIISSRRLDDGVREE-LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL- 85 L + + I SS+ D + +E LE++L+ +DI + ++I+ L + K ++R+L Sbjct: 9 LDKTLAAIRSSKPADKKISKEILEEILLEADIAYEIVEEILYYLPPQNEVKKDDLKRLLN 68 Query: 86 -YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 Y + E + S +P V L++GVNG GKTT I KL+ ++G V+L Sbjct: 69 TYFIYEEGREAK-----------SGKPFVELILGVNGAGKTTTIAKLANLYKNSGKSVIL 117 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 A DTFR+ AI+QL+ WA R V ++ G D +A+A++ A AK +D +I+DTAGR Sbjct: 118 GACDTFRAGAIEQLRQWAQRAGVPIVATQQGHDPSAVAFDTIGSAVAKNLDNVILDTAGR 177 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 L N + L + K++R+ R APH + +LD T G L Q + F+ + G+I+T Sbjct: 178 LQNQTNLAGELSKIVRIAGRAYAGAPHRKILILDGTQGNAGLAQAKAFNDMVSLDGVIIT 237 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 K+DGT +GG L + ++P+ ++G GE ++DL F DF Sbjct: 238 KLDGTPKGGALFSVARELELPILYIGTGETMDDLIKFDPHDF 279 >gi|308184548|ref|YP_003928681.1| cell division protein (ftsY) [Helicobacter pylori SJM180] gi|308060468|gb|ADO02364.1| cell division protein (ftsY) [Helicobacter pylori SJM180] Length = 293 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 96/268 (35%), Positives = 152/268 (56%), Gaps = 20/268 (7%) Query: 46 REELEDLLIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQRVL-----YDVSELIHKMLMP 98 +EELE++LI DI + + +++ L L +V++ R + YD + L Sbjct: 27 KEELEEILISFDIQYDLIESLLKHLGDLVTPKQLEVALLRFVRGDSYYDKTRL------- 79 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 + +P V L+VGVNG GKTT I KL+K K +L AGDTFR+AA+ QL Sbjct: 80 ------KTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQL 133 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W ++ + + ++ GSD ++LAY + A AK +D + IDTAGRLHN + L + K+ Sbjct: 134 QLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKI 193 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 R ++ AP +LD T G + L Q ++FH G+IMTK+DGT++GG ++ + Sbjct: 194 ARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSV 253 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + K+P+ +LG+GE +DL F + F Sbjct: 254 LYELKLPILYLGMGEKEDDLIAFDEERF 281 >gi|145349192|ref|XP_001419024.1| IISP family transporter: SRP receptor alpha-chain-like protein FtsY [Ostreococcus lucimarinus CCE9901] gi|144579254|gb|ABO97317.1| IISP family transporter: SRP receptor alpha-chain-like protein FtsY [Ostreococcus lucimarinus CCE9901] Length = 317 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 91/185 (49%), Positives = 122/185 (65%), Gaps = 3/185 (1%) Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT +GKLS + +++G KVM+ GDTFR+AA +QL WA+RT A S + A+ Y Sbjct: 129 KTTTLGKLSHRFAESGAKVMMVPGDTFRAAAAEQLATWAERTGAVMSDSPPNTKPGAVCY 188 Query: 184 EAFKQAQAK-KVDVLIIDTAGRLHNNSILMAG-IGKMIRVLKRLDPHAPHSVLQVLDATT 241 +A +A A+ VDV++ DT+GRLHNNS LM +G + KRL P APH VL VLD TT Sbjct: 189 KAVDEACARGDVDVVLADTSGRLHNNSQLMDELVGVKNSISKRL-PSAPHEVLLVLDGTT 247 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 G N L Q +F+ G TG+I+TK+DGT+RGG ++ +V IPV F+GVGE + DL+ F Sbjct: 248 GLNMLNQARVFNEAVGVTGIILTKLDGTSRGGAVVSVVDELGIPVKFVGVGESMQDLQSF 307 Query: 302 VAKDF 306 A F Sbjct: 308 DAVGF 312 >gi|317014174|gb|ADU81610.1| signal recognition particle-docking protein FtsY [Helicobacter pylori Gambia94/24] Length = 292 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 95/263 (36%), Positives = 150/263 (57%), Gaps = 6/263 (2%) Query: 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 +EELE++LI DI + + +++ L K + V + + E + K Sbjct: 26 KEELEEILIGFDIQYDLIESLLKHLGDLITPKQLEVALLRFVRGESYY------DKTRLK 79 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + +P V L+VGVNG GKTT I KL+K K +L AGDTFR+AA+ QL++W ++ Sbjct: 80 TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKL 139 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + ++ GSD ++LAY + A AK +D + IDTAGRLHN + L + K+ R ++ Sbjct: 140 NVQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 199 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 AP +LD T G + L Q ++FH G+IMTK+DGT++GG ++ ++ K+P Sbjct: 200 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 259 Query: 286 VYFLGVGEGINDLEPFVAKDFSA 308 + +LG+GE +DL F + F A Sbjct: 260 ILYLGMGEKEDDLIAFDEERFIA 282 >gi|317009226|gb|ADU79806.1| signal recognition particle receptor [Helicobacter pylori India7] Length = 293 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 94/261 (36%), Positives = 149/261 (57%), Gaps = 6/261 (2%) Query: 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 +EELE++LI DI + + +++ L K + V + + E + K Sbjct: 27 KEELEEILIGFDIQYDLIESLLKHLGDLVTPKQLEVALLRFVRGESYY------DKTRLK 80 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + +P V L+VGVNG GKTT I KL+K K +L AGDTFR+AA+ QL++W ++ Sbjct: 81 TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKTLLGAGDTFRAAAVKQLQLWGEKL 140 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + ++ GSD ++LAY + A AK +D + IDTAGRLHN + L + K+ R ++ Sbjct: 141 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 200 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 AP +LD T G + L Q ++FH G+IMTK+DGT++GG ++ ++ K+P Sbjct: 201 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 260 Query: 286 VYFLGVGEGINDLEPFVAKDF 306 + +LG+GE +DL F + F Sbjct: 261 ILYLGMGEKEDDLIAFDEERF 281 >gi|229821030|ref|YP_002882556.1| signal recognition particle-docking protein FtsY [Beutenbergia cavernae DSM 12333] gi|229566943|gb|ACQ80794.1| signal recognition particle-docking protein FtsY [Beutenbergia cavernae DSM 12333] Length = 394 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 111/281 (39%), Positives = 162/281 (57%), Gaps = 11/281 (3%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK------RYAKDVSVQRVLYDV 88 +++ + +G EELED L+ +D+GV +++E L T+ R A V + Sbjct: 110 VLARDHIGEGDWEELEDTLLAADLGVGPTTELMESLRTRVRVLGTRDADSVRALLRELLL 169 Query: 89 SELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 +++ M L S D P +LVVGVNG GKTT +GKL++ + + V+L A Sbjct: 170 AQVDPAMDRALADSPSLGADDELHPATVLVVGVNGTGKTTTVGKLARLLVASDRDVVLGA 229 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 DTFR+AA DQL W R + ++ G+D A++A+EA + A DV+I+DTAGRL Sbjct: 230 ADTFRAAAADQLATWGSRVGVPVIRADRYGADPASVAFEAVRAADEAGADVVIVDTAGRL 289 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 N + LM +GK+ RV R P A L VLDATTGQN LRQ +F V TG+++TK Sbjct: 290 QNKAGLMDELGKIARVASRRAPIA--ETLLVLDATTGQNGLRQARVFAEVVPLTGIVLTK 347 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +DG+A+GG ++ + +PV F+G+GEG +DL PF F Sbjct: 348 LDGSAKGGIVVAVQRELGVPVKFVGLGEGPDDLAPFEPDAF 388 >gi|261838004|gb|ACX97770.1| signal recognition particule receptor [Helicobacter pylori 51] gi|297379959|gb|ADI34846.1| signal recognition particle-docking protein FtsY [Helicobacter pylori v225d] Length = 297 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 94/261 (36%), Positives = 148/261 (56%), Gaps = 6/261 (2%) Query: 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 +EELE++LI DI + + ++ L K + V + + E + K Sbjct: 31 KEELEEILIGFDIQYDLIESLLNHLGDSITPKQLEVALLRFVRGESYY------DKTRLK 84 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + +P V L+VGVNG GKTT I KL+K K +L AGDTFR+AA+ QL++W ++ Sbjct: 85 TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKL 144 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + ++ GSD ++LAY + A AK +D + IDTAGRLHN + L + K+ R ++ Sbjct: 145 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 204 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 AP +LD T G + L Q ++FH G+IMTK+DGT++GG ++ ++ K+P Sbjct: 205 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 264 Query: 286 VYFLGVGEGINDLEPFVAKDF 306 + +LG+GE +DL F + F Sbjct: 265 ILYLGMGEKEDDLIAFDEERF 285 >gi|291165577|gb|EFE27626.1| signal recognition particle-docking protein FtsY [Filifactor alocis ATCC 35896] Length = 429 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 124/302 (41%), Positives = 189/302 (62%), Gaps = 4/302 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L +G + T+ + I ++ + ++D+ + EELE++LI SD+G +IV+ L Sbjct: 129 FFARLKEGLSKTTQNITGKIDQMLGNYTKIDEDMLEELEEILITSDVGYETTVEIVDRLR 188 Query: 72 TKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + + +V ++ +I ML + + S P +++VVGVNGVGKTT IGK Sbjct: 189 QNLKEKLIDNPAQVKPELKLVIESMLQENQESLRIEES--PSILVVVGVNGVGKTTSIGK 246 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ +M G V+LAA DTFR+AA DQL IWA+R D V + G+D +A+ ++ A+ Sbjct: 247 LAHQMKGQGKSVLLAAADTFRAAAADQLTIWAERAGVDIVKHQEGADPSAVIFDGIHAAK 306 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + +DVLI DTAGRLHN LM +GK+ ++++R A VL V+DATTGQNA+ Q + Sbjct: 307 KRNIDVLICDTAGRLHNRKNLMQELGKIFKIVEREYLEANKEVLLVIDATTGQNAMNQAK 366 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F VA +G+I+TK+DGTA+GG ++ I KIPV F+GVGE I+DL+ F A F+ + Sbjct: 367 VFQEVAPLSGIILTKLDGTAKGGVVLAITQELKIPVKFIGVGEQIDDLQMFDASSFAEAM 426 Query: 311 TG 312 G Sbjct: 427 IG 428 >gi|120403169|ref|YP_952998.1| signal recognition particle-docking protein FtsY [Mycobacterium vanbaalenii PYR-1] gi|119955987|gb|ABM12992.1| signal recognition particle-docking protein FtsY [Mycobacterium vanbaalenii PYR-1] Length = 449 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 112/273 (41%), Positives = 161/273 (58%), Gaps = 13/273 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 EE+ED L+ +D+G V + +V L K A V R D ++ ++L+ +P + D Sbjct: 183 EEIEDTLLIADLGPVVTESVVTSLRAKMAASQV---RTEADARAVLREVLIAELRP-DLD 238 Query: 107 FS-------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 S +P V+LVVGVNG GKTT +GKL++ + G +V+L A DTFR+AA DQL+ Sbjct: 239 RSIKALPHADKPSVLLVVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQ 298 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 WA R A V G+D A++A++A A DV++IDTAGRLH + LM +GK+ Sbjct: 299 SWASRVGAQVVRGPEGADPASVAFDAVDTGIAAGADVVVIDTAGRLHTKTGLMDELGKVK 358 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 RV+ + A VL VLDAT GQN+L Q +F V TG+++TK+DGTA+GG + + Sbjct: 359 RVVGKR--AAVDEVLLVLDATIGQNSLPQARVFAEVVDITGVVLTKLDGTAKGGIVFRVQ 416 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +PV +G+GEG +DL PF F + G Sbjct: 417 QELGVPVKLVGLGEGPDDLAPFEPAAFVDALLG 449 >gi|240169624|ref|ZP_04748283.1| putative cell division protein [Mycobacterium kansasii ATCC 12478] Length = 429 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 111/269 (41%), Positives = 160/269 (59%), Gaps = 5/269 (1%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNW 105 +++ED L+ +D+G V Q +V +L ++ + DV + V E++ K L P+ Sbjct: 163 QDVEDTLLVADLGPVVTQSVVSQLRSRLASADVRSEADARAVLREVLVKELQPIMDRSIR 222 Query: 106 DFSH--RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 H P V+LVVGVNG GKTT +GKL++ + G +V+L A DTFR+AA DQL+ WA Sbjct: 223 ALPHADHPSVLLVVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQTWAA 282 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 R A+ V G+D A++A++A + A DV++IDTAGRLH LM +GK+ RV+ Sbjct: 283 RVGAEVVRGAEGADPASVAFDAVDKGIAHGADVVLIDTAGRLHTKVGLMDELGKVKRVVT 342 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 R A VL VLDAT GQN L Q +F V TG+++TK+DGTA+GG + + Sbjct: 343 RR--AAVDEVLLVLDATIGQNGLAQARVFAEVVDITGVVLTKLDGTAKGGIVFRVQQELG 400 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +PV +G+GEG +DL PF F + G Sbjct: 401 VPVKLVGLGEGPDDLAPFEPAAFVDALLG 429 >gi|33864550|ref|NP_896109.1| signal recognition particle docking protein FtsY [Synechococcus sp. WH 8102] gi|33632073|emb|CAE06526.1| signal recognition particle docking protein FtsY [Synechococcus sp. WH 8102] Length = 485 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 109/316 (34%), Positives = 176/316 (55%), Gaps = 12/316 (3%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 ++ E + W+ +L +G T G+ + + L V ++LE LL+R+D GV + Sbjct: 172 ISLEEIDWLGRLRRGLEKTRQGFVSGLLENLGDDPLTPEVLDDLETLLLRADAGVQATDQ 231 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-------RPHVILVVG 118 +++ L R +V V + L ++ L P + R ++ L+VG Sbjct: 232 VLDAL---RQRMNVEVVDPAEGIRFLKEQLRGLLDAPIAASGAQLIAPERDRLNIWLMVG 288 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSD 177 VNGVGKTT +GKL+ +G ++AA DTFR+AA+ Q+++W R+ V + +D Sbjct: 289 VNGVGKTTTLGKLANLAVRSGYSALIAAADTFRAAAVQQVQVWGKRSDVPVVSNPSSNAD 348 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 AA+ ++A A+++ D+L++DTAGRL LM + K+ +++ RL P A L +L Sbjct: 349 PAAVVFDAIGAARSRGTDLLLVDTAGRLQTKHNLMEELQKVRKIIDRLAPEAKVESLLIL 408 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA+ GQN LRQ F AG TG+++TK+DGTARGG + + +P+ F+G GEGI D Sbjct: 409 DASQGQNGLRQAMAFAKAAGLTGVVITKLDGTARGGVALAVSSEAGLPIRFIGAGEGIRD 468 Query: 298 LEPFVAKDF-SAVITG 312 L PF + +F A++ G Sbjct: 469 LRPFNSYEFVEALLAG 484 >gi|323359697|ref|YP_004226093.1| signal recognition particle GTPase [Microbacterium testaceum StLB037] gi|323276068|dbj|BAJ76213.1| signal recognition particle GTPase [Microbacterium testaceum StLB037] Length = 290 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 117/295 (39%), Positives = 170/295 (57%), Gaps = 14/295 (4%) Query: 22 ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK----RYAK 77 A S L + + +D+ ++LE L+ +D G V +++V+EL K R Sbjct: 2 AENSWSLGRALRGLFVKPTIDETTWDDLETALLTADFGPDVTERLVDELREKVERFRTTD 61 Query: 78 DVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136 +QR+L + + E K L + RP V+LVVGVNGVGKTT IGK +K + Sbjct: 62 PRDLQRMLKETLEEHFAKFDTTLR------LTERPAVVLVVGVNGVGKTTTIGKFAKFLQ 115 Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVD 195 G V++ A DTFR+AA+DQL WA+R A V + G D A++A++ A+ + Sbjct: 116 RYGRTVVVGAADTFRAAAVDQLATWAERGGATIVRPQHEGQDPASVAFQTVAHAKETGTE 175 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 ++++DTAGRLH LM +GK+ RV+++ P A VL VLDATTGQN L Q + F Sbjct: 176 IVLVDTAGRLHTKGGLMDELGKIKRVIEKQAPIA--EVLLVLDATTGQNGLMQAQAFLDS 233 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 AG TGL++TK+DG+A+GG ++ + IPV LG GEGINDL F F++ + Sbjct: 234 AGVTGLVLTKLDGSAKGGFVLAVQERTGIPVKLLGQGEGINDLTGFTPHVFASSL 288 >gi|318042977|ref|ZP_07974933.1| signal recognition particle-docking protein FtsY [Synechococcus sp. CB0101] Length = 411 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 107/309 (34%), Positives = 172/309 (55%), Gaps = 11/309 (3%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 ++ E + W+ +L +G T + D + L V ++LE LL+R+D+GV + Sbjct: 99 ISLEEIDWLGRLRRGMEKTRRGFVTQLLDNLGDDPLTPEVLDDLESLLLRADVGVQATDQ 158 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-------RPHVILVVG 118 ++E L + + V + + E + +L P + R +V L+VG Sbjct: 159 VLEALRKRLNEEVVEPAEGIRFLKEQLKGLL---DAPIQASGAQLLAPERGRLNVWLMVG 215 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSD 177 VNGVGKTT +GKL+ +G ++AA DTFR+AA+ Q+ +W +R+ V + +D Sbjct: 216 VNGVGKTTTLGKLANLAVRSGYSCLIAAADTFRAAAVQQVAVWGERSGVTVVSNPSANAD 275 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 AA+ ++A AQAK D++++DTAGRL LM + K+ R++ +L P A L VL Sbjct: 276 PAAVVFDAIGAAQAKGTDLVLVDTAGRLQTKHNLMEELSKVRRIVDKLAPDALVQSLLVL 335 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA+ GQN L+Q F AG TG+++TK+DG++RGG + + +P+ F+G GEGI D Sbjct: 336 DASQGQNGLKQAMAFAQAAGLTGVVITKLDGSSRGGVALAVASEAGLPIRFIGAGEGIRD 395 Query: 298 LEPFVAKDF 306 L PF + +F Sbjct: 396 LRPFNSFEF 404 >gi|187734932|ref|YP_001877044.1| signal recognition particle-docking protein FtsY [Akkermansia muciniphila ATCC BAA-835] gi|187424984|gb|ACD04263.1| signal recognition particle-docking protein FtsY [Akkermansia muciniphila ATCC BAA-835] Length = 282 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 109/274 (39%), Positives = 150/274 (54%), Gaps = 6/274 (2%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87 K+ T S R+D EELE L+ +DIG+ A I ++L + +K + + ++ Sbjct: 5 FKKLFTKFSRSSRID---WEELEAELVAADIGIRRAMGIADQL---KESKGLDAENLVES 58 Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 E++ + + +P VILVVGVNG GKTT KL+ + G +V+LAA Sbjct: 59 TREVLRRAFPSTAPSLPAPPEGKPLVILVVGVNGTGKTTSAAKLAHLLQKQGSRVLLAAA 118 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DTFR+AA++QL+ WAD+ + D A++ YEA QA + LI DTAGRLH Sbjct: 119 DTFRAAAVEQLQSWADKLNIPICKGAPSQDPASVCYEAHTQAIREGFQYLICDTAGRLHT 178 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 LM + K+ R L + D APHS L V+DATTG NAL Q FH +I+TKMD Sbjct: 179 RHNLMEELSKIRRTLAKQDASAPHSTLLVVDATTGANALAQAREFHKATPLDSVIITKMD 238 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 G+ +GG + I+ I FLG GEG D EPF Sbjct: 239 GSGKGGVAVAIMDEMHISPSFLGTGEGAEDFEPF 272 >gi|307637453|gb|ADN79903.1| Signal recognition particle receptor protein [Helicobacter pylori 908] gi|325996043|gb|ADZ51448.1| Signal recognition particle receptor protein [Helicobacter pylori 2018] gi|325997638|gb|ADZ49846.1| Cell division protein [Helicobacter pylori 2017] Length = 292 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 96/268 (35%), Positives = 152/268 (56%), Gaps = 20/268 (7%) Query: 46 REELEDLLIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQRVL-----YDVSELIHKMLMP 98 +EELE++LI DI + + +++ L L +V++ R + YD + L Sbjct: 26 KEELEEILIGFDIQYDLIESLLKHLGDLVTPKQLEVALLRFVRGESYYDKTRL------- 78 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 + +P V L+VGVNG GKTT I KL+K K +L AGDTFR+AA+ QL Sbjct: 79 ------KTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKTLLGAGDTFRAAAVKQL 132 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W ++ + + ++ GSD ++LAY + A AK +D + IDTAGRLHN + L + K+ Sbjct: 133 QLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKI 192 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 R ++ AP +LD T G + L Q ++FH G+IMTK+DGT++GG ++ + Sbjct: 193 ARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSV 252 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + K+P+ +LG+GE +DL F + F Sbjct: 253 LYELKLPILYLGMGEKEDDLIAFDEERF 280 >gi|217967337|ref|YP_002352843.1| signal recognition particle-docking protein FtsY [Dictyoglomus turgidum DSM 6724] gi|217336436|gb|ACK42229.1| signal recognition particle-docking protein FtsY [Dictyoglomus turgidum DSM 6724] Length = 299 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 103/293 (35%), Positives = 176/293 (60%), Gaps = 21/293 (7%) Query: 19 KGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78 KGFA E + +I R+D + +ELE LI+SD+G+ + +I+ E+ ++ + Sbjct: 13 KGFA-------ERLQNIFKFSRVDTELLDELEMELIQSDLGIELTNEIIGEIKKRKISDM 65 Query: 79 VSVQRVLYDVSELI-----HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 ++ L+D + I +K+ + + +R +V++ +GVNG GKT+ +GK + Sbjct: 66 QELRDFLFDFFKSILDGLDYKLRL---------YDNRLNVVIFIGVNGTGKTSTVGKFAY 116 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 + + G ++AA DTFR+AAIDQ+K W +R D V + G+D A+ + A + A+A+ Sbjct: 117 YLKNLGYFPIIAAADTFRAAAIDQIKRWGERVGVDVVAQKEGADPGAVVFNAIEAAKARN 176 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 DVL++DTAGR+H S L+ + K+ +++++ + P L V+DAT GQN +RQVE+FH Sbjct: 177 KDVLLVDTAGRMHTKSNLVEELKKIEKIVEKTLGYPPSENLVVIDATLGQNVVRQVEIFH 236 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TG ++TK+DGTA+GG + ++ IPV + +GE ++DL+PF +F Sbjct: 237 NAVNLTGAVLTKLDGTAKGGVIFNVIKRFNIPVKLVTIGEELDDLKPFDPNEF 289 >gi|237785774|ref|YP_002906479.1| signal recognition particle receptor [Corynebacterium kroppenstedtii DSM 44385] gi|237758686|gb|ACR17936.1| signal recognition particle receptor [Corynebacterium kroppenstedtii DSM 44385] Length = 643 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 111/302 (36%), Positives = 173/302 (57%), Gaps = 17/302 (5%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 I +L + + + +G+ I+ LD+ E++ED L+ +D+G A K+V+ L K Sbjct: 344 IHRLRGRLSRSQNAIGKGVLGILGGGDLDEDAWEDVEDTLVMADLGTAATMKVVDSLREK 403 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKTTV 127 ++ VS ++ + L+ + L+ P + +P VILVVGVNG GKTT Sbjct: 404 IASQGVSSEQ---EARALLRQALIESCHPEMDRSIRAMPYEGKPAVILVVGVNGTGKTTT 460 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 GKL++ ++ G V+L A DTFR+AA DQL+ W R +A V +D A++A++A Sbjct: 461 AGKLARVLTAMGHSVLLGAADTFRAAAADQLEAWGSRVNARTVRGPEDADPASVAFDAVA 520 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR---LDPHAPHSVLQVLDATTGQN 244 A DV+++DTAGRLH + LM +GK+ RV+++ +D VL VLDAT GQN Sbjct: 521 AGVADHADVVVLDTAGRLHTKNNLMDQLGKVKRVVEKKAVVD-----EVLLVLDATVGQN 575 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 L Q +F TG+++TK+DGTA+GG + + +PV +G+GEG++DL PF + Sbjct: 576 GLVQARIFAETVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKMVGLGEGVDDLAPFEVE 635 Query: 305 DF 306 F Sbjct: 636 GF 637 >gi|283954764|ref|ZP_06372280.1| signal recognition particle-docking protein FtsY [Campylobacter jejuni subsp. jejuni 414] gi|283793604|gb|EFC32357.1| signal recognition particle-docking protein FtsY [Campylobacter jejuni subsp. jejuni 414] Length = 288 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 98/272 (36%), Positives = 153/272 (56%), Gaps = 23/272 (8%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV-----LYDVSELIHKMLMPLSKPF 103 LE++L+ +D+ + ++I+ L + K ++RV LY+ E I Sbjct: 31 LEEILLEADVSYEIIEEIIYYLPPQNEIKKEDLKRVMGSYFLYEKKETIQ---------- 80 Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 +P V L++GVNG GKTT I KL+ + KV+L A DTFR+ AI+QLK+WA Sbjct: 81 -----EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQ 135 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + D V + G D +A+A++ +A+AK D +IIDTAGRL N L + K++R+ Sbjct: 136 KIDVDIVLTAQGHDPSAVAFDTISKAKAKGFDRVIIDTAGRLQNQKNLAHELEKIVRISN 195 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 + APH + VLD T G + Q + F+ + G+I+TK+DGTA+GG L I + Sbjct: 196 KALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELE 255 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P++++GVGE + DL+ F D +A + LD Sbjct: 256 LPIFYIGVGEQMTDLQEF---DANAYLDTLLD 284 >gi|15645382|ref|NP_207556.1| cell division protein (ftsY) [Helicobacter pylori 26695] gi|3334188|sp|O25458|FTSY_HELPY RecName: Full=Cell division protein ftsY homolog gi|2313887|gb|AAD07809.1| cell division protein (ftsY) [Helicobacter pylori 26695] Length = 293 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 96/268 (35%), Positives = 152/268 (56%), Gaps = 20/268 (7%) Query: 46 REELEDLLIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQRVL-----YDVSELIHKMLMP 98 +EELE++LI DI + + +++ L L +V++ R + YD + L Sbjct: 27 KEELEEILIGFDIQYDLIESLLKHLGDLITPKQLEVALLRFVRGDSYYDKTRL------- 79 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 + +P V L+VGVNG GKTT I KL+K K +L AGDTFR+AA+ QL Sbjct: 80 ------KTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQL 133 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W ++ + + ++ GSD ++LAY + A AK +D + IDTAGRLHN + L + K+ Sbjct: 134 QLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKI 193 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 R ++ AP +LD T G + L Q ++FH G+IMTK+DGT++GG ++ + Sbjct: 194 ARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSV 253 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + K+P+ +LG+GE +DL F + F Sbjct: 254 LYELKLPILYLGMGEKEDDLIAFDEERF 281 >gi|217033744|ref|ZP_03439170.1| hypothetical protein HP9810_7g25 [Helicobacter pylori 98-10] gi|216943793|gb|EEC23233.1| hypothetical protein HP9810_7g25 [Helicobacter pylori 98-10] Length = 297 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 95/263 (36%), Positives = 150/263 (57%), Gaps = 10/263 (3%) Query: 46 REELEDLLIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103 +EELE++LI DI + + ++ L L +V++ R + S L ++ Sbjct: 31 KEELEEILIGFDIQYDLIESLLNHLGDLVTPKQLEVALLRFVRGESYYDKTRLKTITT-- 88 Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 +P V L+VGVNG GKTT I KL+K K +L AGDTFR+AA+ QL++W + Sbjct: 89 ------KPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGE 142 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + + + ++ GSD ++LAY + A AK +D + IDTAGRLHN + L + K+ R Sbjct: 143 KLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCS 202 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 ++ AP +LD T G + L Q ++FH G+IMTK+DGT++GG ++ ++ K Sbjct: 203 KVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELK 262 Query: 284 IPVYFLGVGEGINDLEPFVAKDF 306 +P+ +LG+GE +DL F + F Sbjct: 263 LPILYLGMGEKEDDLIAFDEERF 285 >gi|317180527|dbj|BAJ58313.1| cell division protein [Helicobacter pylori F32] Length = 297 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 94/261 (36%), Positives = 148/261 (56%), Gaps = 6/261 (2%) Query: 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 +EELE++LI DI + + ++ L K + V + + E + K Sbjct: 31 KEELEEILIGFDIQYDLIESLLNHLGDLITPKQLEVALLRFVRGESYY------DKTRLK 84 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + +P V L+VGVNG GKTT I KL+K K +L AGDTFR+AA+ QL++W ++ Sbjct: 85 TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKL 144 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + ++ GSD ++LAY + A AK +D + IDTAGRLHN + L + K+ R ++ Sbjct: 145 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 204 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 AP +LD T G + L Q ++FH G+IMTK+DGT++GG ++ ++ K+P Sbjct: 205 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 264 Query: 286 VYFLGVGEGINDLEPFVAKDF 306 + +LG+GE +DL F + F Sbjct: 265 ILYLGMGEKEDDLIAFDEERF 285 >gi|188527393|ref|YP_001910080.1| cell division protein (ftsY) [Helicobacter pylori Shi470] gi|188143633|gb|ACD48050.1| cell division protein (ftsY) [Helicobacter pylori Shi470] gi|308062086|gb|ADO03974.1| cell division protein (ftsY) [Helicobacter pylori Cuz20] gi|317177406|dbj|BAJ55195.1| cell division protein [Helicobacter pylori F16] gi|317182074|dbj|BAJ59858.1| cell division protein [Helicobacter pylori F57] Length = 297 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 94/261 (36%), Positives = 148/261 (56%), Gaps = 6/261 (2%) Query: 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 +EELE++LI DI + + ++ L K + V + + E + K Sbjct: 31 KEELEEILIGFDIQYDLIESLLNHLGDLITPKQLEVALLRFVRGESYY------DKTRLK 84 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + +P V L+VGVNG GKTT I KL+K K +L AGDTFR+AA+ QL++W ++ Sbjct: 85 TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKL 144 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + ++ GSD ++LAY + A AK +D + IDTAGRLHN + L + K+ R ++ Sbjct: 145 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 204 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 AP +LD T G + L Q ++FH G+IMTK+DGT++GG ++ ++ K+P Sbjct: 205 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 264 Query: 286 VYFLGVGEGINDLEPFVAKDF 306 + +LG+GE +DL F + F Sbjct: 265 ILYLGMGEKEDDLIAFDEERF 285 >gi|159479342|ref|XP_001697752.1| chloroplast SRP receptor [Chlamydomonas reinhardtii] gi|158274120|gb|EDO99904.1| chloroplast SRP receptor [Chlamydomonas reinhardtii] Length = 338 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 99/265 (37%), Positives = 142/265 (53%), Gaps = 1/265 (0%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNW 105 EELE++LI +D G A KIV+ + A V S + + + I ++L + Sbjct: 61 EELEEVLISADFGPRTALKIVDRIREGVKAGRVKSAEDIRASLKAAIVELLTARGRSSEL 120 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 RP V+L+VGVNG GKTT +GK++ K G KV L GDTFR+AA +QL W+ R Sbjct: 121 KLQGRPAVVLIVGVNGAGKTTTVGKIAYKYGKEGAKVFLIPGDTFRAAAAEQLAEWSRRA 180 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 A G+ A+ + + D++++DTAGRLH LM + + Sbjct: 181 GATIGAFREGARPQAVIASRTCKDASDVYDLILVDTAGRLHTAYKLMEELALCKAAVSNA 240 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P P L VLD TTG N L Q + F+ +GLI+TK+DGTARGG ++ +V +P Sbjct: 241 LPGQPDETLLVLDGTTGLNMLNQAKEFNEAVRLSGLILTKLDGTARGGAVVSVVDQLGLP 300 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVI 310 V F+GVGE DL+PF + F+ + Sbjct: 301 VKFIGVGETAEDLQPFDPEAFAEAL 325 >gi|330836508|ref|YP_004411149.1| signal recognition particle-docking protein FtsY [Spirochaeta coccoides DSM 17374] gi|329748411|gb|AEC01767.1| signal recognition particle-docking protein FtsY [Spirochaeta coccoides DSM 17374] Length = 288 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 111/287 (38%), Positives = 164/287 (57%), Gaps = 8/287 (2%) Query: 21 FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80 F S +KLK + ++ D+G EELED LI SD+G ++ +I + + ++ AK Sbjct: 2 FKSLGMKLKA----LFGAKTYDEGFFEELEDTLIESDLGPRLSMEISD--MVRQEAKSGK 55 Query: 81 VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140 + + D + +L P+ + + P V LV+GVNGVGKTT I KL+ G Sbjct: 56 L-KTHADFLRFVSDILKEKVAPWVYQPASSPQVFLVLGVNGVGKTTTIAKLAYHFHLQGK 114 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 KV+LAA DTFR+AA DQL++ A+R V GSD A+ Y+A AQA+ D++++D Sbjct: 115 KVLLAAADTFRAAAADQLELHAERIGVRIVRQADGSDPGAVVYDAITSAQARHEDIILVD 174 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 TAGR+HN L+ + K+ +++ + A + VLDATTGQNAL Q E+FH Sbjct: 175 TAGRMHNKENLLRELQKIDKIIANKNISADSYKKFLVLDATTGQNALSQAELFHQAVKLD 234 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +I+TK D A+GG +I I +P+ ++G GE DLE F A+ F Sbjct: 235 AVILTKYDSAAKGGTVIRIGEKLGLPIAYVGTGEKYTDLESFNAEKF 281 >gi|13541363|ref|NP_111051.1| Signal recognition particle GTPase [Thermoplasma volcanium GSS1] gi|14324747|dbj|BAB59674.1| signal recognition particle protein dpa [Thermoplasma volcanium GSS1] Length = 287 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 98/278 (35%), Positives = 158/278 (56%), Gaps = 9/278 (3%) Query: 27 KLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85 K K+ + +I S +++D D EE+ LI +D+ V A+ + L + KD L Sbjct: 4 KFKKKLVEIFSRKKIDPDEAAEEIPLKLIEADVSVETAEYLGN--LVRNKLKDRDFSGEL 61 Query: 86 YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 DV K ++ + KP + + +P VI+ +G+NG GKTT IGK++K + G V+L+ Sbjct: 62 NDVLYASIKEILAIPKPDILNVNKKPFVIMFLGINGTGKTTTIGKVAKYLKSKGKSVVLS 121 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 A DTFR+ AI+QL + + + E GSD +++A++A + A+A+ +D +++DTAGR+ Sbjct: 122 ASDTFRAGAIEQLSMIGKEIGVEVIKHEKGSDPSSVAFDAIQHAKARNIDYVLVDTAGRM 181 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 + N LM + K+ RV P L VLDA GQ+++ Q FH G +I+TK Sbjct: 182 NTNKNLMDEMKKIKRV------SNPDITLLVLDAVAGQDSINQARTFHENVGFDAVIVTK 235 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 +D ARGG ++ I + PV F VG+G++D+ F A Sbjct: 236 LDTDARGGSILSIYHDLRKPVLFACVGQGLDDIMQFDA 273 >gi|317012573|gb|ADU83181.1| cell division protein (ftsY) [Helicobacter pylori Lithuania75] Length = 293 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 94/261 (36%), Positives = 148/261 (56%), Gaps = 6/261 (2%) Query: 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 +EELE++LI DI + + ++ L K + V + + E + K Sbjct: 27 KEELEEILIGFDIQYDLIESLLNHLGDLITPKQLEVALLRFVRGESYY------DKTRLK 80 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + +P V L+VGVNG GKTT I KL+K K +L AGDTFR+AA+ QL++W ++ Sbjct: 81 TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKL 140 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + ++ GSD ++LAY + A AK +D + IDTAGRLHN + L + K+ R ++ Sbjct: 141 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 200 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 AP +LD T G + L Q ++FH G+IMTK+DGT++GG ++ ++ K+P Sbjct: 201 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 260 Query: 286 VYFLGVGEGINDLEPFVAKDF 306 + +LG+GE +DL F + F Sbjct: 261 ILYLGMGEKEDDLIAFDEERF 281 >gi|153951547|ref|YP_001397701.1| signal recognition particle-docking protein FtsY [Campylobacter jejuni subsp. doylei 269.97] gi|152938993|gb|ABS43734.1| signal recognition particle-docking protein FtsY [Campylobacter jejuni subsp. doylei 269.97] Length = 288 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 92/253 (36%), Positives = 145/253 (57%), Gaps = 10/253 (3%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 LE++L+ +D+ + ++I+ L + K ++RV+ + K N + Sbjct: 31 LEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVM-------GSYFLYEKKETNQE-- 81 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +P V L++GVNG GKTT I KL+ + KV+L A DTFR+ AI+QLK+WA + D Sbjct: 82 -KPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVD 140 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V + G D +A+A++ +A+AK D +IIDTAGRL N L + K++R+ + Sbjct: 141 IVLTAQGHDPSAVAFDTISKAKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEG 200 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 APH + VLD T G + Q + F+ + G+I+TK+DGTA+GG L I ++P+++ Sbjct: 201 APHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDGTAKGGVLFSIARELELPIFY 260 Query: 289 LGVGEGINDLEPF 301 +GVGE DL F Sbjct: 261 VGVGESKEDLIEF 273 >gi|87123338|ref|ZP_01079189.1| signal recognition particle-docking protein FtsY [Synechococcus sp. RS9917] gi|86169058|gb|EAQ70314.1| signal recognition particle-docking protein FtsY [Synechococcus sp. RS9917] Length = 473 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 110/317 (34%), Positives = 177/317 (55%), Gaps = 12/317 (3%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V+ E + W+ +L +G T + + + L V ++LE LL+R+D GV Sbjct: 159 QVSLEEIDWLGRLRRGLEKTRQGFVTSLLETLGDDPLTPEVVDDLEALLLRADAGVQATD 218 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-------RPHVILVV 117 +++E L + + V + + E + +L +P R ++ L+V Sbjct: 219 QVMEALRRRLNEEVVDPGEGIRFLKEQLRGLL---EQPIQASGVELLAPERGRLNIWLMV 275 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGS 176 GVNGVGKTT +GKL+ +G ++AA DTFR+AA+ Q+ +WA+R+ + + + Sbjct: 276 GVNGVGKTTTLGKLANLAVRSGYSALVAAADTFRAAAVQQVTVWAERSEVPVISNPSANA 335 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D AA+ ++A A++K VD+L++DTAGRL LM + K+ R++ RL P A L V Sbjct: 336 DPAAVVFDAIGAARSKGVDLLLVDTAGRLQTKHNLMEELQKIRRIVDRLAPEARVESLLV 395 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDA+ GQN L+Q F A TG+++TK+DGTARGG + + +P+ F+G GEGI Sbjct: 396 LDASQGQNGLKQAMAFAKAADLTGVVITKLDGTARGGVALAVASEAGLPIRFIGAGEGIR 455 Query: 297 DLEPFVAKDF-SAVITG 312 DL PF + +F A++ G Sbjct: 456 DLRPFNSFEFVEALLAG 472 >gi|308182922|ref|YP_003927049.1| cell division protein (ftsY) [Helicobacter pylori PeCan4] gi|308065107|gb|ADO06999.1| cell division protein (ftsY) [Helicobacter pylori PeCan4] Length = 292 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 94/261 (36%), Positives = 148/261 (56%), Gaps = 6/261 (2%) Query: 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 +EELE++LI DI + + ++ L K + V + + E + K Sbjct: 26 KEELEEILIGFDIQYDLIESLLNHLGDLITPKQLEVALLRFVRGESYY------DKTRLK 79 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + +P V L+VGVNG GKTT I KL+K K +L AGDTFR+AA+ QL++W ++ Sbjct: 80 TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKL 139 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + ++ GSD ++LAY + A AK +D + IDTAGRLHN + L + K+ R ++ Sbjct: 140 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 199 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 AP +LD T G + L Q ++FH G+IMTK+DGT++GG ++ ++ K+P Sbjct: 200 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 259 Query: 286 VYFLGVGEGINDLEPFVAKDF 306 + +LG+GE +DL F + F Sbjct: 260 ILYLGMGEKEDDLIAFDEERF 280 >gi|320449647|ref|YP_004201743.1| signal recognition particle-docking protein FtsY [Thermus scotoductus SA-01] gi|320149816|gb|ADW21194.1| signal recognition particle-docking protein FtsY [Thermus scotoductus SA-01] Length = 304 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 130/315 (41%), Positives = 178/315 (56%), Gaps = 24/315 (7%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + + +L G A T +E + I + V EELE L+ +D+G+ + EEL Sbjct: 1 MGFFDRLKAGLAKT----RETLLKAIPWGGSPEEVLEELEMALLAADVGL----EATEEL 52 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNW-DFSHRPH----------VILVVG 118 L + A S ++ L + V E + +ML P + RP V+LVVG Sbjct: 53 LAEVRA---SGRKDLKEAVKEKLVQMLEPDERRATLRKLGFRPQNPKPIEPQGHVVLVVG 109 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNGVGKTT I KL + + G KVM AGDTFR+A QL W R + G+D Sbjct: 110 VNGVGKTTTIAKLGRYYRNLGKKVMFCAGDTFRAAGGAQLSEWGKRLDIPVIQGPEGADP 169 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AALA++A +A+ D+L++DTAGRLH LM + K+ R + + DP P V VLD Sbjct: 170 AALAFDAASARKARGYDLLLVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD 229 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A TGQN L Q + FH G TG+I+TK+DGTA+GG LIPIV T K+P+ F+GVGEG +DL Sbjct: 230 AVTGQNGLEQAKRFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIRFIGVGEGPDDL 289 Query: 299 EPFVAKDF-SAVITG 312 +PF A+ F A++ G Sbjct: 290 QPFDAEAFVEALLEG 304 >gi|288923592|ref|ZP_06417702.1| signal recognition particle-docking protein FtsY [Frankia sp. EUN1f] gi|288345054|gb|EFC79473.1| signal recognition particle-docking protein FtsY [Frankia sp. EUN1f] Length = 438 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 110/276 (39%), Positives = 160/276 (57%), Gaps = 12/276 (4%) Query: 37 SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL------LTKRYAKDVSVQRVLYDVSE 90 S LD+ E++E L+ +D+GVA ++V+ L L R A D + +L D E Sbjct: 160 SGDNLDEEAWEDVESTLLVADVGVAATAEMVDALRERTKVLGARTAADA--RAMLRD--E 215 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 L+ ++ + + RP ++LVVGVNG GKTT GK+++ + G V+L A DTF Sbjct: 216 LLAQVGTSMDRSLRTSAPDRPAILLVVGVNGTGKTTTCGKIARLLVAEGRSVVLGAADTF 275 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R+AA DQL+ W R A V G D A++A++A K+ D +++DTAGRLH Sbjct: 276 RAAAADQLETWGGRVGATTVRGPEGGDPASVAFDAVKRGIDDGADTVLVDTAGRLHTKVG 335 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + K+ RV+ + P VL VLD+TTGQNAL Q +F TG+++TKMDGTA Sbjct: 336 LMDELSKIKRVVGKQSPV--DEVLLVLDSTTGQNALTQARVFTEAVDITGVVLTKMDGTA 393 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +GG +I + +PV +G+GEG +DL PF A+ F Sbjct: 394 KGGIVIAVQRELGVPVKLIGLGEGPDDLAPFEAEAF 429 >gi|86742277|ref|YP_482677.1| signal recognition particle-docking protein FtsY [Frankia sp. CcI3] gi|86569139|gb|ABD12948.1| signal recognition particle-docking protein FtsY [Frankia sp. CcI3] Length = 414 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 111/278 (39%), Positives = 159/278 (57%), Gaps = 12/278 (4%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-- 98 LD+ E++E L+ +D+GV ++V L R V R DV E++ L+ Sbjct: 140 LDEDAWEDVEATLLLADVGVTATTELVAAL---RERTKVLGARTPADVREMLRDELLAQI 196 Query: 99 ---LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 + RP V+LVVGVNG GKTT GK+++ + G V+L A DTFR+AA Sbjct: 197 GTTTDRSLRTTAPDRPAVVLVVGVNGTGKTTTCGKIARLLVADGRTVVLGAADTFRAAAA 256 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 DQL+ W +R A V G D A++A++A +Q VD ++IDTAGRLH + LM + Sbjct: 257 DQLQTWGERVGAITVRGAEGGDPASVAFDAVRQGTQSGVDTVLIDTAGRLHTKAGLMDEL 316 Query: 216 GKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 K+ RV+ + H P VL VLDATTGQNAL Q ++F TG+++TK+DGTA+GG Sbjct: 317 AKIKRVVGK---HGPVDEVLLVLDATTGQNALVQAQVFTQAVDLTGVVLTKLDGTAKGGI 373 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +I + +PV +G+GEG +DL PF + F + G Sbjct: 374 VIAVQRELGMPVKLIGLGEGPDDLAPFEPEAFVDALLG 411 >gi|293389071|ref|ZP_06633544.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis S613] gi|291081589|gb|EFE18552.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis S613] Length = 172 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 80/160 (50%), Positives = 110/160 (68%) Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DTFR+ AIDQL +W +R + V G D AA+ ++A ++A+ ++ DVL++DTAGRL N Sbjct: 2 DTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAVERAKTEQADVLLVDTAGRLQN 61 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 LM + K+ RV++R P APH VL V+DATTGQNA+ Q + F TGL++TK+D Sbjct: 62 KVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLD 121 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 GTA+GG +I I +PV +G+GEGINDLEPF A DF+ Sbjct: 122 GTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 161 >gi|188524093|ref|ZP_02557344.2| signal recognition particle-docking protein FtsY [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273332|ref|ZP_03205868.1| signal recognition particle-docking protein FtsY [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225550674|ref|ZP_03771623.1| signal recognition particle-docking protein FtsY [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|195659882|gb|EDX53262.1| signal recognition particle-docking protein FtsY [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249852|gb|EDY74632.1| signal recognition particle-docking protein FtsY [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225379828|gb|EEH02190.1| signal recognition particle-docking protein FtsY [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 351 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 108/294 (36%), Positives = 171/294 (58%), Gaps = 7/294 (2%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 I K +G +S L I ++ + +++ E LE++LI D+G KI+E + Sbjct: 41 INKFNEGLRKSSSALTNAINELATKYIDINEEWYEHLEEVLIGYDVGYVATNKIIESIRN 100 Query: 73 KRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + + V+ ++ ++ D + + ++ N ++ +V+LVVGVNGVGKTT I Sbjct: 101 EMIYQKVNDPELIKSIIIDKIFIYYIQDTEINTAINLK-ENQTNVVLVVGVNGVGKTTSI 159 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYEAFK 187 K++KK D KV+L AGDTFR+ A++QLK+WA R D + ++ G D A++ Y K Sbjct: 160 AKITKKFIDENKKVLLVAGDTFRAGAVEQLKVWAQRLGVDIELPNKEGQDPASVIYAGVK 219 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 + +K D++I DT+GRL N LM + K+ V+ + D HAPH L VLDAT GQ+ + Sbjct: 220 KGYEQKYDLVICDTSGRLQNKINLMNELKKIHDVIHKFDEHAPHETLLVLDATQGQSGIN 279 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 Q + F+ V +G+I+TKMD T+RGG ++ I IPV +G+GE ++DL F Sbjct: 280 QAKAFNEVTKISGIILTKMDSTSRGGIVLAIKDAFNIPVKLIGLGEKLDDLSVF 333 >gi|109947230|ref|YP_664458.1| cell division protein [Helicobacter acinonychis str. Sheeba] gi|109714451|emb|CAJ99459.1| cell division protein [Helicobacter acinonychis str. Sheeba] Length = 293 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 94/261 (36%), Positives = 148/261 (56%), Gaps = 6/261 (2%) Query: 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 +EELE++LI DI + + +++ L K + V + + E + K Sbjct: 27 KEELEEILIGFDIQYDLIESLLKHLGDLITPKQLEVALLRFVRGESYY------DKTRLK 80 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + +P V L+VGVNG GKTT I KL+K K +L AGDTFR+AA+ QL++W + Sbjct: 81 TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGKKL 140 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + ++ GSD ++LAY + A AK +D + IDTAGRLHN + L + K+ R ++ Sbjct: 141 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 200 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 AP +LD T G + L Q ++FH G+IMTK+DGT++GG ++ ++ K+P Sbjct: 201 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 260 Query: 286 VYFLGVGEGINDLEPFVAKDF 306 + +LG+GE +DL F + F Sbjct: 261 ILYLGMGEKEDDLIAFDEECF 281 >gi|33239462|ref|NP_874404.1| Signal recognition particle GTPase, FtsY [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33236987|gb|AAP99056.1| Signal recognition particle GTPase, FtsY [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 431 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 112/316 (35%), Positives = 178/316 (56%), Gaps = 21/316 (6%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV--- 60 + ++ + ++W+ +L +G T + D L +ELE LL+RSD+GV Sbjct: 116 ENISLDEINWLSRLQQGLEKTRKGFVTDLLDKFGDDPLTPETLDELETLLLRSDVGVDAT 175 Query: 61 -----AVAQKIVEELLTK----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111 A+ +++ EE+L R+ K+ + V + +LMP N Sbjct: 176 DQIINALRKRLNEEVLDSKEGLRFLKEQLCKIVDQPIKNSGKTLLMPSENSLN------- 228 Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 + L+VGVNGVGKTT +GKL+ +G ++AA DTFR+AA++Q+K+W +R+ V Sbjct: 229 -IWLIVGVNGVGKTTTLGKLANLALRSGFSALIAAADTFRAAAVEQVKVWGERSGVSVVA 287 Query: 172 SEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 +E +D AA+ ++A A++KK+++L++DTAGRL + LM + K+ +++ RL P A Sbjct: 288 NETPNADPAAIVFDAIGAAKSKKIELLLVDTAGRLQTKNNLMEELTKVRKIIDRLAPEAN 347 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 L VLDAT GQN L Q F A TG+++TK+DG+ARGG + +P+ F+G Sbjct: 348 VESLLVLDATQGQNGLSQAMSFAKSANLTGVVITKLDGSARGGVAFAVSSQTNLPIRFIG 407 Query: 291 VGEGINDLEPFVAKDF 306 GEGI DL PF + +F Sbjct: 408 AGEGIRDLRPFNSFEF 423 >gi|256784964|ref|ZP_05523395.1| docking protein [Streptomyces lividans TK24] Length = 391 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 120/315 (38%), Positives = 181/315 (57%), Gaps = 13/315 (4%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V + + +L + + L +G+ ++S LDD EE+ED L+ +D+GV Q Sbjct: 82 EVPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDDDTWEEIEDTLLTADVGVQPTQ 141 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVG 118 ++VE L R V R ++ L+ + L+ L P + +P +++VVG Sbjct: 142 ELVERL---RERVKVLGTRTPEELRTLLREELITLVGPDMDREVKTEPATSKPGIVMVVG 198 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNG GKTT GKL++ + G V+L A DTFR+AA DQL+ W +R A V G D Sbjct: 199 VNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEGGDP 258 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237 A++A++A K+ + DV++IDTAGRLH + LM +GK+ RV+++ HAP VL VL Sbjct: 259 ASVAFDAVKEGKEMGSDVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HAPLDEVLLVL 315 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DATTGQN L Q +F V TG+++TK+DGTA+GG ++ + +PV +G+GEG +D Sbjct: 316 DATTGQNGLIQARVFAEVVNITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGADD 375 Query: 298 LEPFVAKDFSAVITG 312 L PF F + G Sbjct: 376 LAPFEPAAFVDALIG 390 >gi|108798923|ref|YP_639120.1| signal recognition particle-docking protein FtsY [Mycobacterium sp. MCS] gi|119868038|ref|YP_937990.1| signal recognition particle-docking protein FtsY [Mycobacterium sp. KMS] gi|108769342|gb|ABG08064.1| signal recognition particle-docking protein FtsY [Mycobacterium sp. MCS] gi|119694127|gb|ABL91200.1| signal recognition particle-docking protein FtsY [Mycobacterium sp. KMS] Length = 466 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 115/273 (42%), Positives = 163/273 (59%), Gaps = 13/273 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDV--SELIHKMLMPL 99 EE+ED L+ +D+G V + +V L T R A D + VL DV SEL +M + Sbjct: 200 EEIEDTLLIADLGPVVTESVVAALRT-RMASDAVRTEADARAVLRDVLISELHPEMDRSI 258 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 + D +P V+LVVGVNG GKTT +GKL++ + G +V+L A DTFR+AA DQL+ Sbjct: 259 RALPHAD---KPSVLLVVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQ 315 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 WA R A+ V G+D A++A++A + DV+ IDTAGRLH + LM +GK+ Sbjct: 316 TWASRVGAEVVRGPEGADPASVAFDAVSKGIENGADVVAIDTAGRLHTKTGLMDELGKVK 375 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 RV+++ A VL VLDAT GQN+L Q +F V TG+++TK+DGTA+GG + + Sbjct: 376 RVVEKR--AAVDEVLLVLDATIGQNSLPQARVFAEVVKITGVVLTKLDGTAKGGIVFRVQ 433 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +PV +G+GEG +DL PF F + G Sbjct: 434 QELGVPVKLVGLGEGPDDLAPFEPGAFVDALLG 466 >gi|171741540|ref|ZP_02917347.1| hypothetical protein BIFDEN_00625 [Bifidobacterium dentium ATCC 27678] gi|283455129|ref|YP_003359693.1| signal recognition particle [Bifidobacterium dentium Bd1] gi|171277154|gb|EDT44815.1| hypothetical protein BIFDEN_00625 [Bifidobacterium dentium ATCC 27678] gi|283101763|gb|ADB08869.1| FtsY signal recognition particle [Bifidobacterium dentium Bd1] Length = 398 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 118/306 (38%), Positives = 177/306 (57%), Gaps = 19/306 (6%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S I++L A + + + +I++ L + E++ED L+ +D+G ++++VEEL Sbjct: 95 SRIQRLKAKLAKSGNPFGKVLFNILAKDHLSESDWEDVEDTLLLADVGAEASEQLVEEL- 153 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR----------PHVILVVGVNG 121 R +S Q D SE+ + L K D R P VI++VGVNG Sbjct: 154 --RNDARISGQ---SDPSEVRKALKDKLLKLVGTDTDRRLNADKEGANKPSVIIMVGVNG 208 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAA 180 GKTT GKL++ G +VM+ A DTFR+AA DQL+ W + V S+ G+D A+ Sbjct: 209 TGKTTTAGKLARLFVADGKQVMMGAADTFRAAAADQLETWGAKVGVPVVRSDKDGADPAS 268 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 +A+EA +QA+ DVLIIDTAGRL N + LM +GK+ RV ++ P VL VLDAT Sbjct: 269 VAFEASEQAKETHADVLIIDTAGRLQNKANLMDELGKIRRVTEKNLPV--DEVLLVLDAT 326 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQN + Q ++F G TG++++K+DG+A+GG +I + +PV +G+GEG +DL P Sbjct: 327 TGQNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAP 386 Query: 301 FVAKDF 306 F + F Sbjct: 387 FDPEGF 392 >gi|13357698|ref|NP_077972.1| SRP family GTP-binding protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762333|ref|YP_001752224.1| signal recognition particle-docking protein FtsY [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920430|ref|ZP_02931745.1| signal recognition particle-docking protein FtsY [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508691|ref|ZP_02689930.2| signal recognition particle-docking protein FtsY [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701943|ref|ZP_02554397.2| signal recognition particle-docking protein FtsY [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|11279276|pir||D82930 SRP family of GTP-binding proteins, cell division protein UU141 [imported] - Ureaplasma urealyticum gi|6899100|gb|AAF30547.1|AE002114_14 SRP family of GTP-binding proteins - cell division protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827910|gb|ACA33172.1| signal recognition particle-docking protein FtsY [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902878|gb|EDT49167.1| signal recognition particle-docking protein FtsY [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675613|gb|EDT87518.1| signal recognition particle-docking protein FtsY [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700694|gb|EDU18976.1| signal recognition particle-docking protein FtsY [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 351 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 108/294 (36%), Positives = 171/294 (58%), Gaps = 7/294 (2%) Query: 14 IRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 I K +G +S L + I ++ + +D+ E LE++LI D+G KI+E + Sbjct: 41 INKFNEGLRKSSSALTDAINELAVKYIDIDERWYEHLEEVLISYDVGYVATNKIIESIRN 100 Query: 73 KRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + + V+ ++ ++ D + + ++ N ++ +V+LVVGVNGVGKTT I Sbjct: 101 EMIYQKVNDPDLIKSIIIDKIFIYYIQDTEINTAINLK-ENQTNVVLVVGVNGVGKTTSI 159 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYEAFK 187 K++KK D KV+L AGDTFR+ A++QLK+WA R D + ++ G D A++ Y K Sbjct: 160 AKITKKFIDENKKVLLVAGDTFRAGAVEQLKVWAQRLGVDIELPNKEGQDPASVIYAGVK 219 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 + +K D++I DT+GRL N LM + K+ V+ + D +APH L VLDAT GQ+ + Sbjct: 220 KGYEQKYDLVICDTSGRLQNKINLMNELKKIHDVIHKFDEYAPHETLLVLDATQGQSGIN 279 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 Q + F+ V +G+I+TKMD T+RGG ++ I IPV +G+GE + DL F Sbjct: 280 QAKAFNEVTKISGIILTKMDSTSRGGIVLAIKDAFNIPVKLIGLGEKLEDLSVF 333 >gi|306823813|ref|ZP_07457187.1| cell division protein FtsY [Bifidobacterium dentium ATCC 27679] gi|304552811|gb|EFM40724.1| cell division protein FtsY [Bifidobacterium dentium ATCC 27679] Length = 398 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 118/306 (38%), Positives = 177/306 (57%), Gaps = 19/306 (6%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S I++L A + + + +I++ L + E++ED L+ +D+G ++++VEEL Sbjct: 95 SRIQRLKAKLAKSGNPFGKVLFNILAKDHLSESDWEDVEDTLLLADVGAEASEQLVEEL- 153 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR----------PHVILVVGVNG 121 R +S Q D SE+ + L K D R P VI++VGVNG Sbjct: 154 --RNDARISGQ---SDPSEVRKALKDKLLKLVGTDTDRRLNADKEGANKPSVIIMVGVNG 208 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAA 180 GKTT GKL++ G +VM+ A DTFR+AA DQL+ W + V S+ G+D A+ Sbjct: 209 TGKTTTAGKLARLFVADGKQVMMGAADTFRAAAADQLETWGAKVGVPVVRSDKDGADPAS 268 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 +A+EA +QA+ DVLIIDTAGRL N + LM +GK+ RV ++ P VL VLDAT Sbjct: 269 VAFEASEQAKETHADVLIIDTAGRLQNKANLMDELGKIRRVTEKNLPV--DEVLLVLDAT 326 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQN + Q ++F G TG++++K+DG+A+GG +I + +PV +G+GEG +DL P Sbjct: 327 TGQNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAP 386 Query: 301 FVAKDF 306 F + F Sbjct: 387 FDPEGF 392 >gi|126434523|ref|YP_001070214.1| signal recognition particle-docking protein FtsY [Mycobacterium sp. JLS] gi|126234323|gb|ABN97723.1| signal recognition particle-docking protein FtsY [Mycobacterium sp. JLS] Length = 458 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 115/273 (42%), Positives = 163/273 (59%), Gaps = 13/273 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDV--SELIHKMLMPL 99 EE+ED L+ +D+G V + +V L T R A D + VL DV SEL +M + Sbjct: 192 EEIEDTLLIADLGPVVTESVVAALRT-RMASDAVRTEADARAVLRDVLISELHPEMDRSI 250 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 + D +P V+LVVGVNG GKTT +GKL++ + G +V+L A DTFR+AA DQL+ Sbjct: 251 RALPHAD---KPSVLLVVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQ 307 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 WA R A+ V G+D A++A++A + DV+ IDTAGRLH + LM +GK+ Sbjct: 308 TWASRVGAEVVRGPEGADPASVAFDAVSKGIENGADVVAIDTAGRLHTKTGLMDELGKVK 367 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 RV+++ A VL VLDAT GQN+L Q +F V TG+++TK+DGTA+GG + + Sbjct: 368 RVVEKR--AAVDEVLLVLDATIGQNSLPQARVFAEVVKITGVVLTKLDGTAKGGIVFRVQ 425 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +PV +G+GEG +DL PF F + G Sbjct: 426 QELGVPVKLVGLGEGPDDLAPFEPGAFVDALLG 458 >gi|293385098|ref|ZP_06630925.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis R712] gi|291077625|gb|EFE14989.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis R712] Length = 175 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 80/160 (50%), Positives = 110/160 (68%) Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DTFR+ AIDQL +W +R + V G D AA+ ++A ++A+ ++ DVL++DTAGRL N Sbjct: 5 DTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAVERAKTEQADVLLVDTAGRLQN 64 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 LM + K+ RV++R P APH VL V+DATTGQNA+ Q + F TGL++TK+D Sbjct: 65 KVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLD 124 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 GTA+GG +I I +PV +G+GEGINDLEPF A DF+ Sbjct: 125 GTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 164 >gi|332673434|gb|AEE70251.1| cell division protein FtsY [Helicobacter pylori 83] Length = 297 Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 81/197 (41%), Positives = 123/197 (62%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P V L+VGVNG GKTT I KL+K K +L AGDTFR+AA+ QL++W ++ + Sbjct: 89 KPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKLNIQV 148 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + ++ GSD ++LAY + A AK +D + IDTAGRLHN + L + K+ R ++ A Sbjct: 149 ISTKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKVLKDA 208 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P +LD T G + L Q ++FH G+IMTK+DGT++GG ++ ++ K+P+ +L Sbjct: 209 PFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLPILYL 268 Query: 290 GVGEGINDLEPFVAKDF 306 G+GE +DL F + F Sbjct: 269 GMGEKEDDLIAFDEERF 285 >gi|21223936|ref|NP_629715.1| docking protein [Streptomyces coelicolor A3(2)] gi|4007739|emb|CAA22423.1| putative prokaryotic docking protein [Streptomyces coelicolor A3(2)] gi|23345105|gb|AAN17782.1| signal recognition particle receptor FtsY [Streptomyces lividans] Length = 412 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 120/315 (38%), Positives = 181/315 (57%), Gaps = 13/315 (4%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V + + +L + + L +G+ ++S LDD EE+ED L+ +D+GV Q Sbjct: 103 EVPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDDDTWEEIEDTLLTADVGVQPTQ 162 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVG 118 ++VE L R V R ++ L+ + L+ L P + +P +++VVG Sbjct: 163 ELVERL---RERVKVLGTRTPEELRTLLREELITLVGPDMDREVKTEPATSKPGIVMVVG 219 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNG GKTT GKL++ + G V+L A DTFR+AA DQL+ W +R A V G D Sbjct: 220 VNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEGGDP 279 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237 A++A++A K+ + DV++IDTAGRLH + LM +GK+ RV+++ HAP VL VL Sbjct: 280 ASVAFDAVKEGKEMGSDVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HAPLDEVLLVL 336 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DATTGQN L Q +F V TG+++TK+DGTA+GG ++ + +PV +G+GEG +D Sbjct: 337 DATTGQNGLIQARVFAEVVNITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGADD 396 Query: 298 LEPFVAKDFSAVITG 312 L PF F + G Sbjct: 397 LAPFEPAAFVDALIG 411 >gi|289768856|ref|ZP_06528234.1| signal recognition particle receptor FtsY [Streptomyces lividans TK24] gi|289699055|gb|EFD66484.1| signal recognition particle receptor FtsY [Streptomyces lividans TK24] Length = 412 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 120/315 (38%), Positives = 181/315 (57%), Gaps = 13/315 (4%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V + + +L + + L +G+ ++S LDD EE+ED L+ +D+GV Q Sbjct: 103 EVPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDDDTWEEIEDTLLTADVGVQPTQ 162 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVG 118 ++VE L R V R ++ L+ + L+ L P + +P +++VVG Sbjct: 163 ELVERL---RERVKVLGTRTPEELRTLLREELITLVGPDMDREVKTEPATSKPGIVMVVG 219 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNG GKTT GKL++ + G V+L A DTFR+AA DQL+ W +R A V G D Sbjct: 220 VNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEGGDP 279 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237 A++A++A K+ + DV++IDTAGRLH + LM +GK+ RV+++ HAP VL VL Sbjct: 280 ASVAFDAVKEGKEMGSDVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HAPLDEVLLVL 336 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DATTGQN L Q +F V TG+++TK+DGTA+GG ++ + +PV +G+GEG +D Sbjct: 337 DATTGQNGLIQARVFAEVVNITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGADD 396 Query: 298 LEPFVAKDFSAVITG 312 L PF F + G Sbjct: 397 LAPFEPAAFVDALIG 411 >gi|310828472|ref|YP_003960829.1| signal recognition particle-docking protein FtsY [Eubacterium limosum KIST612] gi|308740206|gb|ADO37866.1| signal recognition particle-docking protein FtsY [Eubacterium limosum KIST612] Length = 311 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 108/254 (42%), Positives = 156/254 (61%), Gaps = 4/254 (1%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112 I SD+G+ A KI E L R + + DV +L+ +++ + + + P Sbjct: 46 FILSDLGIETATKITETL---REQIKETKTKAKQDVMDLLRQIMTEMVEVEKHQ-TELPV 101 Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 ++LVVGVNGVGKTT I KL++K D G KVM+AA DTFR+AA +QL +WADR D + S Sbjct: 102 IMLVVGVNGVGKTTTIAKLAQKYKDQGKKVMVAAADTFRAAAAEQLDVWADRVGVDIIKS 161 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 G+D +++ ++A A+A+ D+L+ DTAGRLHN LM + K+ RV++R Sbjct: 162 VQGADPSSVVFDAIGAARARGADILLCDTAGRLHNKVNLMKELEKITRVVEREGQGFSVH 221 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 L VLDATTGQNAL Q + F+ G++MTKMDGTA+GG I I+ ++P+ ++G+G Sbjct: 222 NLLVLDATTGQNALNQAKTFNDAVHLDGIVMTKMDGTAKGGVAIAIIDELQVPIEYVGIG 281 Query: 293 EGINDLEPFVAKDF 306 E DL F A +F Sbjct: 282 EKPEDLIDFDAGEF 295 >gi|317178879|dbj|BAJ56667.1| cell division protein [Helicobacter pylori F30] Length = 297 Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 96/268 (35%), Positives = 150/268 (55%), Gaps = 20/268 (7%) Query: 46 REELEDLLIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQRVL-----YDVSELIHKMLMP 98 +EELE++LI DI + + ++ L L +V++ R + YD + L Sbjct: 31 KEELEEILIGFDIQYDLIESLLNHLGDLVTPKQLEVALLRFVRGESYYDKTRL------- 83 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 + +P V L+VGVNG GKTT I KL+K K +L AGDTFR+AA+ QL Sbjct: 84 ------KTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQL 137 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++W ++ + + ++ GSD ++LAY + A AK +D + IDTAGRLHN + L + K+ Sbjct: 138 QLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKI 197 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 R + AP +LD T G + L Q ++FH G+IMTK+DGT++GG ++ + Sbjct: 198 ARTCSKALKDAPFYKFLILDGTQGSSGLIQAKIFHETLALDGVIMTKLDGTSKGGAILSV 257 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + K+P+ +LG+GE +DL F + F Sbjct: 258 LYELKLPILYLGMGEKEDDLIAFDEERF 285 >gi|15611767|ref|NP_223418.1| hypothetical protein jhp0700 [Helicobacter pylori J99] gi|11386869|sp|Q9ZL80|FTSY_HELPJ RecName: Full=Cell division protein ftsY homolog gi|4155255|gb|AAD06275.1| FUNCTIONAL HOMOLOG OF SRP RECEPTOR [Helicobacter pylori J99] Length = 293 Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 93/261 (35%), Positives = 148/261 (56%), Gaps = 6/261 (2%) Query: 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 +EELE++LI DI + + +++ L K + V + + E + K Sbjct: 27 KEELEEILIGFDIQYDLIESLLKHLGDLITPKQLEVALLRFVRGESYY------DKTRLK 80 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + +P V L+VGVNG GKTT I KL+K K +L AGDTFR+AA+ QL++W ++ Sbjct: 81 TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKL 140 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + ++ GSD ++LAY + A AK +D + IDTAGRLHN + L + K+ ++ Sbjct: 141 NVQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIAHTCSKV 200 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 AP +LD T G + L Q ++FH G+IMTK+DGT++GG ++ ++ K+P Sbjct: 201 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 260 Query: 286 VYFLGVGEGINDLEPFVAKDF 306 + +LG+GE +DL F + F Sbjct: 261 ILYLGMGEKEDDLIAFDEERF 281 >gi|222824209|ref|YP_002575783.1| signal recognition particle-docking GTPase FtsY [Campylobacter lari RM2100] gi|222539431|gb|ACM64532.1| signal recognition particle-docking GTPase FtsY [Campylobacter lari RM2100] Length = 288 Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 101/281 (35%), Positives = 163/281 (58%), Gaps = 22/281 (7%) Query: 41 LDDGVREELEDL-LIRSDIGVA-------------VAQKIVEELLTKRYAKDVSVQRVLY 86 L DG+++ LE + LI++D V VA +IVEE++ D V++ Sbjct: 5 LKDGLKKTLESINLIKADKKVITKELLEEILLEADVAYEIVEEIIYYLPPND-EVKKA-- 61 Query: 87 DVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 D+ ++ + KP +F++ +P V L++GVNGVGKTT I K++ + G KV+L Sbjct: 62 DLERVMGTYFI-YDKP---EFANAKPFVDLILGVNGVGKTTSIAKIAHLYKENGEKVVLG 117 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 A DTFR+ AI+QLK+WA + D + + G D +A+AY+A +A AK D +I+DTAGRL Sbjct: 118 ACDTFRAGAIEQLKLWAQKLEIDIIATSQGHDPSAVAYDAISKALAKNYDRVILDTAGRL 177 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 N L + K++R+ + APH + VLD T G + Q + F+ + G+I+TK Sbjct: 178 QNQKNLANELEKIVRISNKAMQGAPHRKILVLDGTQGVAGILQAKAFNELVKLDGVIITK 237 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +DGTA+GG L I ++P++++GVGE + + F +++ Sbjct: 238 LDGTAKGGALFSIARELELPIFYVGVGEQLEQIYEFNPQEY 278 >gi|116514964|ref|YP_802593.1| hypothetical protein BCc_015 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256818|gb|ABJ90500.1| signal recognition particle receptor [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 346 Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 104/278 (37%), Positives = 166/278 (59%), Gaps = 5/278 (1%) Query: 32 ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV---EELLTKRYAKDVSVQRVLYDV 88 + +I ++ LD ++LED+L+ SD GV +KI+ +E + K D + +V + Sbjct: 63 LKNIFLNKNLDKKFFKKLEDILLSSDFGVQSTKKILNLFKEKIKKNNITDTKIAKVYF-- 120 Query: 89 SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 E++ K+L SK + + +ILVVG+NGVGKTT + KL+ + G V+L+A D Sbjct: 121 KEILLKILKKSSKFSDKNNYSNLLIILVVGINGVGKTTAVVKLANYYKNLGKSVILSACD 180 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFRSAAIDQL + + + IGSD +++A+++ A+ KK+D++IIDTAGR+HN Sbjct: 181 TFRSAAIDQLIDLGNLYNIEIFYKSIGSDPSSVAFDSIIYAKKKKIDIVIIDTAGRMHNK 240 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 L+ + KM RV+K+ A + V+DA GQN+++Q ++F + +G I+TK+D Sbjct: 241 MHLIQELKKMNRVIKKCCSTAFYKTYLVIDAGIGQNSIQQAKIFSSEINISGSIITKLDS 300 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TA+GG + I+ KIP+ ++ GE I D F K F Sbjct: 301 TAKGGIIFSIINDLKIPICYISAGEKITDFNIFDYKYF 338 >gi|219685383|ref|ZP_03540202.1| signal recognition particle-docking protein FtsY [Borrelia garinii Far04] gi|219673156|gb|EED30176.1| signal recognition particle-docking protein FtsY [Borrelia garinii Far04] Length = 281 Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 91/274 (33%), Positives = 165/274 (60%), Gaps = 9/274 (3%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 E I ++ S + + + E LED+L+ SDI + I+ +L TK K+ + + ++ + Sbjct: 5 EKIKNLFKSNQ-QENIIENLEDILLESDINNEIVIDIINKL-TKE--KNKNEKTIIEKLK 60 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 EL+ + K F + +++ +++L+VG+NG+GKT+ I KL+ K+ + G ++++A DT Sbjct: 61 ELLSNYINI--KKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADT 117 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+AAI+Q+K++ ++ + GSD +A+ +++ A+ K D LIIDTAGRL N Sbjct: 118 FRAAAIEQMKVYGEQIGIKIISQNQGSDPSAVIFDSISSAKIKNYDALIIDTAGRLQNKE 177 Query: 210 ILMAGIGKMIRV-LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 L+ + K+ V LK++ + + + + V+D+T G+N Q E+F+ G G+I+TK+D Sbjct: 178 NLIKELQKINNVILKQIKNTNINYQKILVIDSTIGKNTNSQAEIFNKAIGIDGIIITKLD 237 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 ++R G +I I + PVYF GE + D++ F Sbjct: 238 SSSRAGAIINISKILEKPVYFTTFGEKLEDIKEF 271 >gi|78778395|ref|YP_396507.1| signal recognition particle-docking protein FtsY [Prochlorococcus marinus str. MIT 9312] gi|78711894|gb|ABB49071.1| signal recognition particle-docking protein FtsY [Prochlorococcus marinus str. MIT 9312] Length = 430 Score = 165 bits (418), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 109/315 (34%), Positives = 180/315 (57%), Gaps = 21/315 (6%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +++ + + W+ KL KG T + D + L ++LE LLIR+D+G+ Sbjct: 116 QISIDEIDWLTKLRKGLEETRKGFVTELLDKLGDDPLTPESLDDLETLLIRADVGIDSTD 175 Query: 65 KIVEELLTKRYAK----DVSVQRVLYDVSELIHK--------MLMPLSKPFNWDFSHRPH 112 K++ L TK + + ++ + ++ ++ K +L+P N Sbjct: 176 KVISSLRTKLNEEVVGGEAGIKFLKKELKLIVDKPIKNSGTDLLIPQKGKLN-------- 227 Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 V L+VGVNGVGKTT +GKL+ S + K ++AA DTFR+AA++QLK+W +R++ D + + Sbjct: 228 VWLLVGVNGVGKTTTLGKLAYLSSRSNYKTLIAAADTFRAAAVEQLKVWGERSNVDVISN 287 Query: 173 EI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 + +D AA+ ++A AQ + VD+L++DTAGRL + LM + K+ +++ + P A Sbjct: 288 QSKNADPAAVVFDAINSAQKRNVDLLLVDTAGRLQTKNNLMDELAKIKKIIDKKVPDAII 347 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 L VLDA+ GQN L+Q + F A +G I+TK+DGT+RGG + + +P+ F+G Sbjct: 348 ESLLVLDASQGQNGLKQAKSFAKSANLSGAIITKLDGTSRGGVSLAVSEEVNLPIRFIGA 407 Query: 292 GEGINDLEPFVAKDF 306 GEGI DL PF + +F Sbjct: 408 GEGIKDLRPFNSYEF 422 >gi|297202635|ref|ZP_06920032.1| signal recognition particle-docking protein FtsY [Streptomyces sviceus ATCC 29083] gi|197713210|gb|EDY57244.1| signal recognition particle-docking protein FtsY [Streptomyces sviceus ATCC 29083] Length = 403 Score = 165 bits (418), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 121/315 (38%), Positives = 184/315 (58%), Gaps = 13/315 (4%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V + + +L + + L +G+ ++S LDD EE+ED+L+ +D+GVA Q Sbjct: 94 EVPEPTAGRLVRLRTRLSRSQNALGKGLLTLLSREHLDDDTWEEIEDILLTADVGVAPTQ 153 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWDFSHR-PHVILVVG 118 ++V+ L R V R ++ L+ L+ L + + R P +++VVG Sbjct: 154 ELVDGL---RERVKVLGTRTPDELRGLLRAELLKLVGTEVDRTVRTEPEERKPGIVMVVG 210 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNG GKTT GKL++ + G V+L A DTFR+AA DQL+ W +R A V G D Sbjct: 211 VNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEGGDP 270 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237 A++A++A K+ + VDV++IDTAGRLH + LM +GK+ RV+++ HAP VL VL Sbjct: 271 ASVAFDAVKEGKEMGVDVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HAPLDEVLLVL 327 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DATTGQN L Q +F V TG+++TK+DGTA+GG ++ + +PV +G+GEG +D Sbjct: 328 DATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGADD 387 Query: 298 LEPFVAKDFSAVITG 312 L PF + F + G Sbjct: 388 LAPFEPEAFVDALIG 402 >gi|254994056|ref|ZP_05276246.1| SRP receptor alpha-subunit [Listeria monocytogenes FSL J2-064] Length = 174 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 82/161 (50%), Positives = 111/161 (68%) Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 AGDTFR+ AIDQL++W +RT D + GSD AA+ ++A + A+A+K DVL+ DTAGRL Sbjct: 1 AGDTFRAGAIDQLEVWGERTGVDVIKQAEGSDPAAVMFDAVQAAKARKADVLLCDTAGRL 60 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 N LM + K+ RV+ R P+APH VL VLDATTGQNA Q + F TG+I+TK Sbjct: 61 QNKVNLMNELEKVKRVITREIPNAPHEVLLVLDATTGQNAFVQAKQFKETTDVTGIILTK 120 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +DGTA+GG +I I IPV F+G+GE ++DL+ F A ++ Sbjct: 121 LDGTAKGGIVIAIRNELDIPVKFVGLGEQMDDLQAFDANEY 161 >gi|171920824|ref|ZP_02932001.1| signal recognition particle-docking protein FtsY [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195867735|ref|ZP_03079736.1| signal recognition particle-docking protein FtsY [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|171903592|gb|EDT49881.1| signal recognition particle-docking protein FtsY [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195660590|gb|EDX53846.1| signal recognition particle-docking protein FtsY [Ureaplasma urealyticum serovar 9 str. ATCC 33175] Length = 351 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 108/294 (36%), Positives = 170/294 (57%), Gaps = 7/294 (2%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 I K +G +S L I ++ + +++ E LE++LI D+G KI+E + Sbjct: 41 INKFNEGLRKSSSALTNAINELATKYIDINEEWYEHLEEVLIGYDVGYVATNKIIESIRN 100 Query: 73 KRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + + V+ ++ ++ D + + +S N ++ +V+LVVGVNGVGKTT I Sbjct: 101 EMIYQKVNDPELIKSIIIDKIFIYYIQDTEISTEINLK-QNQTNVVLVVGVNGVGKTTSI 159 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAAALAYEAFK 187 K++KK + KV+L AGDTFR+ A++QLK+WA R + D + G D A++ Y K Sbjct: 160 AKITKKFINENKKVLLVAGDTFRAGAVEQLKVWAQRLNVDIELPIKEGQDPASVIYAGVK 219 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 + +K D++I DT+GRL N LM + K+ V+ + D HAPH L VLDAT GQ+ + Sbjct: 220 KGYEQKYDLVICDTSGRLQNKINLMNELKKIHDVIHKFDEHAPHETLLVLDATQGQSGIN 279 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 Q + F+ V +G+I+TKMD T+RGG ++ I IPV +G+GE ++DL F Sbjct: 280 QAKAFNEVTKISGIILTKMDSTSRGGIVLAIKDAFNIPVKLIGLGEKLDDLSVF 333 >gi|309802108|ref|ZP_07696218.1| signal recognition particle-docking protein FtsY [Bifidobacterium dentium JCVIHMP022] gi|308221309|gb|EFO77611.1| signal recognition particle-docking protein FtsY [Bifidobacterium dentium JCVIHMP022] Length = 398 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 117/306 (38%), Positives = 177/306 (57%), Gaps = 19/306 (6%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S I++L A + + + +I++ L + E++ED L+ +D+G ++++VEEL Sbjct: 95 SRIQRLKAKLAKSGNPFGKVLFNILAKDHLSESDWEDVEDTLLLADVGAEASEQLVEEL- 153 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR----------PHVILVVGVNG 121 R +S Q D SE+ + L K D R P VI++VGVNG Sbjct: 154 --RNDARISGQ---SDPSEVRKALKDKLLKLVGTDTDRRLNADKEGANKPSVIIMVGVNG 208 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAA 180 GKTT GKL++ G +VM+ A DTFR+AA DQL+ W + V S+ G+D A+ Sbjct: 209 TGKTTTAGKLARLFVADGKQVMMGAADTFRAAAADQLETWGAKVGVPVVRSDKDGADPAS 268 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 +A+EA +QA+ DV+IIDTAGRL N + LM +GK+ RV ++ P VL VLDAT Sbjct: 269 VAFEASEQAKETHADVIIIDTAGRLQNKANLMDELGKIRRVTEKNLPV--DEVLLVLDAT 326 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQN + Q ++F G TG++++K+DG+A+GG +I + +PV +G+GEG +DL P Sbjct: 327 TGQNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAP 386 Query: 301 FVAKDF 306 F + F Sbjct: 387 FDPEGF 392 >gi|123967546|ref|YP_001008404.1| signal recognition particle docking protein FtsY [Prochlorococcus marinus str. AS9601] gi|123197656|gb|ABM69297.1| signal recognition particle docking protein FtsY [Prochlorococcus marinus str. AS9601] Length = 429 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 109/316 (34%), Positives = 180/316 (56%), Gaps = 21/316 (6%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 +++ + + W+ KL +G T + D + L ++LE LLIR+D+G+ Sbjct: 114 NQISIDEIDWLTKLRRGLEETRKGFVTELLDKLGDDPLTPESLDDLETLLIRADVGIDST 173 Query: 64 QKIVEELLTKRYAK----DVSVQRVLYDVSELIHK--------MLMPLSKPFNWDFSHRP 111 K++ L TK + + ++ + ++ +I K +L+P N Sbjct: 174 DKVISSLRTKLNEEVVGGEAGIKFLKKELKLIIDKPIKNSGTDLLVPQKGKLN------- 226 Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 V L+VGVNGVGKTT +GKL+ S + K ++AA DTFR+AA++QLK+W DR++ D + Sbjct: 227 -VWLLVGVNGVGKTTTLGKLAYLSSKSNYKTLIAAADTFRAAAVEQLKVWGDRSNVDVIS 285 Query: 172 SEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 ++ +D AA+ ++A A+ + VD+L++DTAGRL + LM + K+ +++ + P A Sbjct: 286 NQSKNADPAAVVFDAINSAKKRNVDLLLVDTAGRLQTKNNLMDELAKIKKIIDKKVPDAI 345 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 L VLDA+ GQN L+Q + F A +G I+TK+DGT+RGG + + +P+ F+G Sbjct: 346 VESLLVLDASQGQNGLKQAKSFAKSADLSGAIITKLDGTSRGGVSLAVSEEVNLPIRFIG 405 Query: 291 VGEGINDLEPFVAKDF 306 GEGI DL PF + +F Sbjct: 406 AGEGIKDLRPFNSYEF 421 >gi|183981799|ref|YP_001850090.1| cell division protein FtsY [Mycobacterium marinum M] gi|183175125|gb|ACC40235.1| cell division protein FtsY [Mycobacterium marinum M] Length = 458 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 115/306 (37%), Positives = 175/306 (57%), Gaps = 13/306 (4%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 + +L A + L + +I LD+ +++ED L+ +D+G V + +V +L ++ Sbjct: 159 LERLRGRLAKSQNALGRSVLGLIGGGDLDEDSWQDVEDTLLVADLGPVVTEAVVSQLRSR 218 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-------PHVILVVGVNGVGKTT 126 + +V R D ++ +L+ +P + D S R P V+LVVGVNG GKTT Sbjct: 219 LASGNV---RSEDDARAVLRDVLIKALQP-DMDRSIRALPHPDHPSVLLVVGVNGTGKTT 274 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 +GKL++ + G +V+L A DTFR+AA QL+ WA R A+ V G+D A++A++A Sbjct: 275 TVGKLARVLVADGRRVVLGAADTFRAAAAVQLQTWAARVGAEVVSGAEGADPASVAFDAV 334 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A DV++IDTAGRLH LM +GK+ RV+ R A VL VLDAT GQN L Sbjct: 335 DKGVAAGADVVLIDTAGRLHTKVGLMDELGKVKRVVTRR--AAVDEVLLVLDATIGQNGL 392 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q ++F V TG+++TK+DGTA+GG + + +PV +G+GEG +DL PF F Sbjct: 393 AQAKVFAEVVDITGVVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPAAF 452 Query: 307 SAVITG 312 + G Sbjct: 453 VDALLG 458 >gi|219684854|ref|ZP_03539796.1| signal recognition particle-docking protein FtsY [Borrelia garinii PBr] gi|219671799|gb|EED28854.1| signal recognition particle-docking protein FtsY [Borrelia garinii PBr] Length = 281 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 90/279 (32%), Positives = 167/279 (59%), Gaps = 9/279 (3%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 E I ++ S + + + E LED+L+ SDI + I+ +L TK K+ + + ++ + Sbjct: 5 EKIKNLFKSNQ-QENIIENLEDILLESDINNEIVIDIINKL-TKE--KNKNEKTIIEKLK 60 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 EL+ + K F + +++ +++L+VG+NG+GKT+ I KL+ K+ + G ++++A DT Sbjct: 61 ELLSNYINI--KKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADT 117 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+AAI+Q+K++ ++ + GSD +A+ +++ A+ K D LIIDTAGRL N Sbjct: 118 FRAAAIEQMKVYGEQIGIKIISQNQGSDPSAVIFDSISSAKIKNYDALIIDTAGRLQNKE 177 Query: 210 ILMAGIGKMIRV-LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 L+ + K+ V LK++ + + + + V+D+T G+N Q E+F+ G G+I+TK+D Sbjct: 178 NLIKELQKINNVILKQIKNTNINYQKILVIDSTIGKNTNSQAEIFNKAIGIDGIIITKLD 237 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++R G +I I + P+YF GE + D++ F ++ Sbjct: 238 SSSRAGAIINISKILEKPIYFTTFGEKLEDIKEFDINEY 276 >gi|124021725|ref|YP_001016032.1| signal recognition particle docking protein FtsY [Prochlorococcus marinus str. MIT 9303] gi|123962011|gb|ABM76767.1| signal recognition particle docking protein FtsY [Prochlorococcus marinus str. MIT 9303] Length = 484 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 106/308 (34%), Positives = 175/308 (56%), Gaps = 5/308 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 +K++ E + W+ +L +G T +G+ + + L V ++LE LL+R+D GV Sbjct: 169 EKISLEEIDWLGRLRRGLEKTRQGFVKGLLENLGDDPLTPEVLDDLETLLLRADAGVEAT 228 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGV 119 ++++ L + + V L + + + +L + D R ++ L VGV Sbjct: 229 DQVLDALRRRMNEEVVDPAEGLRFLKQQLCNLLEAPIQDTGTDLLAPERGRLNIWLFVGV 288 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SEIGSDA 178 NGVGKTT +GKL+ +G ++AA DTFR+AA++Q+K+W R+ + S +D Sbjct: 289 NGVGKTTTLGKLANLAVRSGYSALIAAADTFRAAAVEQVKVWGARSGVPVIANSTANADP 348 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A A++K D++++DTAGRL LM + K+ R++ RL P A L +LD Sbjct: 349 AAVVFDAIGAARSKSTDLVLVDTAGRLQTKHNLMEELQKVRRIIDRLAPEARVESLLILD 408 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A+ GQN LRQ F A TG+++TK+DGT+RGG + + ++P+ F+G GEGI DL Sbjct: 409 ASQGQNGLRQAMAFAQAAALTGVVITKLDGTSRGGVALAVASEARLPIRFIGAGEGIRDL 468 Query: 299 EPFVAKDF 306 PF + +F Sbjct: 469 RPFNSFEF 476 >gi|33862284|ref|NP_893844.1| signal recognition particle docking protein FtsY [Prochlorococcus marinus str. MIT 9313] gi|33640397|emb|CAE20186.1| signal recognition particle docking protein FtsY [Prochlorococcus marinus str. MIT 9313] Length = 484 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 106/308 (34%), Positives = 175/308 (56%), Gaps = 5/308 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 +K++ E + W+ +L +G T +G+ + + L V ++LE LL+R+D GV Sbjct: 169 EKISLEEIDWLGRLRRGLEKTRQGFVKGLLENLGDDPLTPEVLDDLETLLLRADAGVEAT 228 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGV 119 ++++ L + + V L + + + +L + D R ++ L VGV Sbjct: 229 DQVLDALRRRMNEEVVDPAEGLRFLKQQLCNLLEAPIQDTGTDLLAPERGRLNIWLFVGV 288 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SEIGSDA 178 NGVGKTT +GKL+ +G ++AA DTFR+AA++Q+K+W R+ + S +D Sbjct: 289 NGVGKTTTLGKLANLAVRSGYTALIAAADTFRAAAVEQVKVWGARSGVPVIANSTANADP 348 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A A++K D++++DTAGRL LM + K+ R++ RL P A L +LD Sbjct: 349 AAVVFDAIGAARSKSTDLVLVDTAGRLQTKHNLMEELQKVRRIIDRLAPEARVESLLILD 408 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A+ GQN LRQ F A TG+++TK+DGT+RGG + + ++P+ F+G GEGI DL Sbjct: 409 ASQGQNGLRQAMAFAQAAALTGVVITKLDGTSRGGVALAVASEARLPIRFIGAGEGIRDL 468 Query: 299 EPFVAKDF 306 PF + +F Sbjct: 469 RPFNSFEF 476 >gi|291004106|ref|ZP_06562079.1| signal recognition particle GTPase [Saccharopolyspora erythraea NRRL 2338] Length = 346 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 107/280 (38%), Positives = 160/280 (57%), Gaps = 22/280 (7%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML---------- 96 EE+ED L+ +D+G A +I + L ++ ++ + R V L+ ++L Sbjct: 75 EEIEDTLLMADLGAATTTEITDRLRSELASRGL---RTSEQVRALLREVLVDALGPDMQR 131 Query: 97 ----MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 +P P + +P V+LVVGVNG GKTT GKL++ + G V+L A DTFR+ Sbjct: 132 SVQALPHGDPAD---GGKPAVVLVVGVNGTGKTTTTGKLARVLVADGRTVLLGAADTFRA 188 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AA++QL W +R A+ V G+D A++A+EA + VD ++IDTAGRLH + LM Sbjct: 189 AAVEQLATWGERVGAEVVRGNEGADPASVAFEAVSRGSDTAVDTVLIDTAGRLHTKTGLM 248 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 +GK+ RV+++ VL VLDATTGQN L Q +F V TG+++TK+DGTA+G Sbjct: 249 DELGKVKRVVEKR--AQVDEVLLVLDATTGQNGLTQARVFSDVVDVTGIVLTKLDGTAKG 306 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 G + + +PV +G+GEG +DL PF F + G Sbjct: 307 GIVFQVQRELGVPVKLVGLGEGPDDLAPFEPGAFVDALLG 346 >gi|118465902|ref|YP_882948.1| signal recognition particle-docking protein FtsY [Mycobacterium avium 104] gi|254776221|ref|ZP_05217737.1| signal recognition particle-docking protein FtsY [Mycobacterium avium subsp. avium ATCC 25291] gi|118167189|gb|ABK68086.1| signal recognition particle-docking protein FtsY [Mycobacterium avium 104] Length = 428 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 110/276 (39%), Positives = 162/276 (58%), Gaps = 9/276 (3%) Query: 42 DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLM 97 D+ +++ED L+ +D+G V + ++ +L + + DV + VL DV LI+++ Sbjct: 157 DEDAWQDVEDTLLVADLGPVVTESVIAQLRGRLASSDVRTEADAKAVLRDV--LINELRP 214 Query: 98 PLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 L + + P V+L+VGVNG GKTT +GKL++ + G +V+L A DTFR+AA D Sbjct: 215 DLDRSIRALPHADHPSVLLIVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAAD 274 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL+ WA R A+ V G+D A++A++A Q A DV++IDTAGRLH LM + Sbjct: 275 QLQTWASRVGAEVVRGAEGADPASVAFDAVDQGIAAGADVVLIDTAGRLHTKVGLMDELD 334 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 K+ RV+ R A VL VLDAT GQN L Q +F V TG ++TK+DGTA+GG + Sbjct: 335 KVKRVVTRR--AAVDEVLLVLDATIGQNGLAQARVFAEVVEITGAVLTKLDGTAKGGIVF 392 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + +PV +G+GEG +DL PF F + G Sbjct: 393 RVQQELGVPVKLVGLGEGPDDLAPFEPAAFVDALLG 428 >gi|254167206|ref|ZP_04874059.1| signal recognition particle-docking protein FtsY [Aciduliprofundum boonei T469] gi|197624062|gb|EDY36624.1| signal recognition particle-docking protein FtsY [Aciduliprofundum boonei T469] Length = 307 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 107/306 (34%), Positives = 164/306 (53%), Gaps = 22/306 (7%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 K E L +I+K + S + G+ I+ +L+D + + +E L+ +D+ V V + Sbjct: 3 KALKEKLGFIKKKAE---SMDQEFTTGVGKKITEDKLEDFLWD-IEVALMEADVAVDVIE 58 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-----LSKPFNWD----FSHRPHVIL 115 KI +L K V ++ D+ +++ L LSK F++D + RP VI+ Sbjct: 59 KIKNDLKKALVGKKVKLRA---DMGKIVEDTLKKSIKDILSKDFDFDEFIRNAPRPTVIM 115 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 +GVNG GKTTVI KL+K + D G V++AAGDTFR+ AI+Q+ I D + + G Sbjct: 116 FLGVNGTGKTTVIAKLAKYLKDKGYSVVMAAGDTFRAGAIEQISIHGDNLGIKVIKHQAG 175 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 D AA+ Y+A + A+AK D ++IDTAGR+ N LM + K+ RV K PH + Sbjct: 176 GDPAAVCYDAIEHAKAKHRDFVLIDTAGRMQTNRNLMEEMKKIKRVAK------PHLTIF 229 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V DA G +A+ Q + F G +I+ K+D A+GG + I P+ FLG G+ Sbjct: 230 VGDALAGNDAIEQAKKFEEAVGIDAVILNKVDADAKGGAALSIAYELNKPIIFLGNGQKY 289 Query: 296 NDLEPF 301 +DL F Sbjct: 290 DDLMKF 295 >gi|219123971|ref|XP_002182288.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406249|gb|EEC46189.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 298 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 106/280 (37%), Positives = 164/280 (58%), Gaps = 32/280 (11%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEEL------LTKRYAKD--VSVQRVLYDVSELIHKML 96 V ++L+D+L+++D+G A+ IV E+ TK +KD S+ R +LI + Sbjct: 24 VLDDLQDILLQADLGTKTAEDIVAEVKSLREDSTKMLSKDDLKSIMR-----GKLIEALN 78 Query: 97 MPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSA 153 LS + P V+ V+G NG+GKTT IGKL+ ++ + G + V+LAA DTFR+ Sbjct: 79 TELSGAIQFSPLVDKTPTVLFVMGANGMGKTTTIGKLAHRLRNEGNQTVLLAACDTFRAG 138 Query: 154 AIDQLKIWADRTSADFV--CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 A++QL+ WA+R D V +++ + +A L Y A + A+K D +++DT+GRL NN L Sbjct: 139 AVEQLQQWAERAQVDMVGPSTKVTTPSAVL-YAALDKGIAEKYDTILVDTSGRLSNNDQL 197 Query: 212 MAGIGKMIRVL-KRL------------DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 A + KM +V+ KRL + PH L VLDA G+ AL ++++ G Sbjct: 198 TAELKKMKKVIQKRLSRENDEEGKPLPNLQVPHETLLVLDAAQGRMALDSAKVWNEEIGL 257 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 +GLI+TK+DG+ARGG ++ I ++PV +GVGEGI DL Sbjct: 258 SGLILTKLDGSARGGSVVAISRDIQLPVKLIGVGEGIEDL 297 >gi|134102503|ref|YP_001108164.1| signal recognition particle GTPase [Saccharopolyspora erythraea NRRL 2338] gi|133915126|emb|CAM05239.1| signal recognition particle GTPase [Saccharopolyspora erythraea NRRL 2338] Length = 503 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 107/280 (38%), Positives = 160/280 (57%), Gaps = 22/280 (7%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML---------- 96 EE+ED L+ +D+G A +I + L ++ ++ + R V L+ ++L Sbjct: 232 EEIEDTLLMADLGAATTTEITDRLRSELASRGL---RTSEQVRALLREVLVDALGPDMQR 288 Query: 97 ----MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 +P P + +P V+LVVGVNG GKTT GKL++ + G V+L A DTFR+ Sbjct: 289 SVQALPHGDPAD---GGKPAVVLVVGVNGTGKTTTTGKLARVLVADGRTVLLGAADTFRA 345 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AA++QL W +R A+ V G+D A++A+EA + VD ++IDTAGRLH + LM Sbjct: 346 AAVEQLATWGERVGAEVVRGNEGADPASVAFEAVSRGSDTAVDTVLIDTAGRLHTKTGLM 405 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 +GK+ RV+++ VL VLDATTGQN L Q +F V TG+++TK+DGTA+G Sbjct: 406 DELGKVKRVVEKR--AQVDEVLLVLDATTGQNGLTQARVFSDVVDVTGIVLTKLDGTAKG 463 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 G + + +PV +G+GEG +DL PF F + G Sbjct: 464 GIVFQVQRELGVPVKLVGLGEGPDDLAPFEPGAFVDALLG 503 >gi|229258562|gb|ACQ45586.1| cell division protein FtsY [Vesicomya sp. mt-II symbiont] Length = 194 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 75/159 (47%), Positives = 110/159 (69%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + VILVVGVNG GKTT+IGKL+K + G VMLAAGDTFR+AA++QLK+W +R Sbjct: 36 NETFVILVVGVNGAGKTTLIGKLAKSFQNQGKSVMLAAGDTFRAAAVEQLKVWGERNQIP 95 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + G+DAA++ ++A++ AQAK +D+LI DTAGRLH LM + K+ RV+ + + + Sbjct: 96 VIAQTTGADAASVIFDAYQSAQAKNIDILIADTAGRLHTQDNLMQELTKIKRVIAKQNAN 155 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 APH + ++D +GQNA+ Q E F+ +G+ +TK+D Sbjct: 156 APHETMLIIDGGSGQNAINQAEEFNKAVTLSGISITKLD 194 >gi|185178762|ref|ZP_02554787.2| signal recognition particle-docking protein FtsY [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188518543|ref|ZP_02556795.2| signal recognition particle-docking protein FtsY [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|209554046|ref|YP_002284564.1| signal recognition particle-docking protein FtsY [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225551231|ref|ZP_03772177.1| signal recognition particle-docking protein FtsY [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209374|gb|EDU06417.1| signal recognition particle-docking protein FtsY [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188997922|gb|EDU67019.1| signal recognition particle-docking protein FtsY [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|209541547|gb|ACI59776.1| signal recognition particle-docking protein FtsY [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379046|gb|EEH01411.1| signal recognition particle-docking protein FtsY [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 351 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 107/294 (36%), Positives = 170/294 (57%), Gaps = 7/294 (2%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 I K +G +S L I ++ + +++ E LE++LI D+G KI+E + Sbjct: 41 INKFNEGLRKSSSALTNAINELATKYIDINEEWYEHLEEVLIGYDVGYVATNKIIESIRN 100 Query: 73 KRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + + V+ ++ ++ D + + ++ N ++ +V+LVVGVNGVGKTT I Sbjct: 101 EMIYQKVNDPELIKSIIIDKIFIYYIQDTEINTEINLK-QNQTNVVLVVGVNGVGKTTSI 159 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAAALAYEAFK 187 K++KK + KV+L AGDTFR+ A++QLK+WA R + D + G D A++ Y K Sbjct: 160 AKITKKFINENKKVLLVAGDTFRAGAVEQLKVWAQRLNVDIELPIKEGQDPASVIYAGVK 219 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 + +K D++I DT+GRL N LM + K+ V+ + D HAPH L VLDAT GQ+ + Sbjct: 220 KGYEQKYDLVICDTSGRLQNKINLMNELKKIHDVIHKFDEHAPHETLLVLDATQGQSGIN 279 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 Q + F+ V +G+I+TKMD T+RGG ++ I IPV +G+GE ++DL F Sbjct: 280 QAKAFNEVTKISGIILTKMDSTSRGGIVLAIKDAFNIPVKLIGLGEKLDDLSVF 333 >gi|315445095|ref|YP_004077974.1| signal recognition particle-docking protein FtsY [Mycobacterium sp. Spyr1] gi|315263398|gb|ADU00140.1| signal recognition particle-docking protein FtsY [Mycobacterium sp. Spyr1] Length = 471 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 112/303 (36%), Positives = 168/303 (55%), Gaps = 11/303 (3%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L A + L + +I LD+ EE+ED L+ +D+G V + +V L K Sbjct: 174 RLRGRLAKSQNTLGRSMLGLIGGGDLDEDSWEEVEDTLLIADLGPVVTESVVTALRAKMA 233 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKTTVIG 129 + V R D ++ ++L+ +P + +P V+LVVGVNG GKTT +G Sbjct: 234 SSKV---RTEADARAVLREVLIAELQPDLDRAIRALPHADKPSVLLVVGVNGTGKTTTVG 290 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL++ + G +V+L A DTFR+AA DQL+ WA R A V G+D A++A++A Sbjct: 291 KLARVLVADGRRVVLGAADTFRAAAADQLQSWASRVGAQVVRGPEGADPASVAFDAVDTG 350 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A DV+++DTAGRLH + LM +GK+ RV+ + VL VLDAT GQN+L Q Sbjct: 351 IASGADVVVVDTAGRLHTKTGLMDELGKVKRVVSKR--AEVDEVLLVLDATIGQNSLPQA 408 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 +F TG+++TK+DGTA+GG + + +PV +G+GEG +DL PF F Sbjct: 409 RVFAEAVDITGVVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPAAFVDA 468 Query: 310 ITG 312 + G Sbjct: 469 LLG 471 >gi|145224765|ref|YP_001135443.1| signal recognition particle-docking protein FtsY [Mycobacterium gilvum PYR-GCK] gi|145217251|gb|ABP46655.1| signal recognition particle-docking protein FtsY [Mycobacterium gilvum PYR-GCK] Length = 469 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 111/298 (37%), Positives = 166/298 (55%), Gaps = 11/298 (3%) Query: 21 FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80 A + L + +I LD+ EE+ED L+ +D+G V + +V L K + V Sbjct: 177 LAKSQNTLGRSMLGLIGGGDLDEDSWEEVEDTLLIADLGPVVTESVVTALRAKMASSKV- 235 Query: 81 VQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 R D ++ ++L+ +P + +P V+LVVGVNG GKTT +GKL++ Sbjct: 236 --RTEADARAVLREVLIAELQPDLDRAIRALPHADKPSVLLVVGVNGTGKTTTVGKLARV 293 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 + G +V+L A DTFR+AA DQL+ WA R A V G+D A++A++A A Sbjct: 294 LVADGRRVVLGAADTFRAAAADQLQSWASRVGAQVVRGPEGADPASVAFDAVDTGIASGA 353 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 DV+++DTAGRLH + LM +GK+ RV+ + VL VLDAT GQN+L Q +F Sbjct: 354 DVVVVDTAGRLHTKTGLMDELGKVKRVVSKR--AEVDEVLLVLDATIGQNSLPQARVFAE 411 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 TG+++TK+DGTA+GG + + +PV +G+GEG +DL PF F + G Sbjct: 412 AVDITGVVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPAAFVDALLG 469 >gi|20145859|emb|CAD29627.1| signal recognition particle receptor [Streptomyces lividans] Length = 412 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 119/315 (37%), Positives = 180/315 (57%), Gaps = 13/315 (4%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V + + +L + + L +G+ ++S LDD EE+ED L+ +D+GV Q Sbjct: 103 EVPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDDDTWEEIEDTLLTADVGVQPTQ 162 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVG 118 ++VE L R V R ++ L+ + L+ L P + +P +++VVG Sbjct: 163 ELVERL---RERVKVLGTRTPEELRTLLREELITLVGPDMDREVKTEPATSKPGIVMVVG 219 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNG GKTT GKL++ + G V+L A DTFR+AA DQ + W +R A V G D Sbjct: 220 VNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQPQTWGERVGAHTVRGPEGGDP 279 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237 A++A++A K+ + DV++IDTAGRLH + LM +GK+ RV+++ HAP VL VL Sbjct: 280 ASVAFDAVKEGKEMGSDVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HAPVDEVLLVL 336 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DATTGQN L Q +F V TG+++TK+DGTA+GG ++ + +PV +G+GEG +D Sbjct: 337 DATTGQNGLIQARVFAEVVNITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGADD 396 Query: 298 LEPFVAKDFSAVITG 312 L PF F + G Sbjct: 397 LAPFEPAAFVDALIG 411 >gi|207092645|ref|ZP_03240432.1| cell division protein (ftsY) [Helicobacter pylori HPKX_438_AG0C1] Length = 208 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 81/196 (41%), Positives = 122/196 (62%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P V L+VGVNG GKTT I KL+K K +L AGDTFR+AA+ QL++W ++ + + Sbjct: 1 PLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKTLLGAGDTFRAAAVKQLQLWGEKLNIQVI 60 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 ++ GSD ++LAY + A AK +D + IDTAGRLHN + L + K+ R ++ AP Sbjct: 61 SAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKVLKDAP 120 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 +LD T G + L Q ++FH G+IMTK+DGT++GG ++ ++ K+P+ +LG Sbjct: 121 FYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLPILYLG 180 Query: 291 VGEGINDLEPFVAKDF 306 +GE +DL F + F Sbjct: 181 MGEKEDDLIAFDEERF 196 >gi|254167609|ref|ZP_04874460.1| signal recognition particle-docking protein FtsY [Aciduliprofundum boonei T469] gi|289596933|ref|YP_003483629.1| signal recognition particle-docking protein FtsY [Aciduliprofundum boonei T469] gi|197623418|gb|EDY35982.1| signal recognition particle-docking protein FtsY [Aciduliprofundum boonei T469] gi|289534720|gb|ADD09067.1| signal recognition particle-docking protein FtsY [Aciduliprofundum boonei T469] Length = 307 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 107/306 (34%), Positives = 164/306 (53%), Gaps = 22/306 (7%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 K E L +I+K + S + G+ I+ +L+D + + +E L+ +D+ V V + Sbjct: 3 KALKEKLGFIKKKAE---SMDQEFTTGVGKKITEDKLEDFLWD-IEVALMEADVAVDVIE 58 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-----LSKPFNWD----FSHRPHVIL 115 KI +L K V ++ DV +++ L L+K F++D + RP VI+ Sbjct: 59 KIKNDLKKALVGKKVKLRA---DVGKIVEDTLKKSIKEILTKDFDFDEFIRNAPRPTVIM 115 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 +GVNG GKTTVI KL+K + D G V++AAGDTFR+ AI+Q+ I D + + G Sbjct: 116 FLGVNGTGKTTVIAKLAKYLKDKGYSVVMAAGDTFRAGAIEQISIHGDNLGIKVIKHQAG 175 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 D AA+ Y+A + A+AK D ++IDTAGR+ N LM + K+ RV K PH + Sbjct: 176 GDPAAVCYDAIEHAKAKHRDFVLIDTAGRMQTNRNLMEEMKKIKRVAK------PHLTIF 229 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V DA G +A+ Q + F G +I+ K+D A+GG + I P+ FLG G+ Sbjct: 230 VGDALAGNDAIEQAKKFEEAVGIDAVILNKVDADAKGGAALSIAYELNKPIIFLGNGQKY 289 Query: 296 NDLEPF 301 +DL F Sbjct: 290 DDLMIF 295 >gi|118617610|ref|YP_905942.1| cell division protein FtsY [Mycobacterium ulcerans Agy99] gi|118569720|gb|ABL04471.1| cell division protein FtsY [Mycobacterium ulcerans Agy99] Length = 455 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 112/295 (37%), Positives = 172/295 (58%), Gaps = 13/295 (4%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 + +L A + L + +I LD+ +++ED L+ +D+G V + +V +L ++ Sbjct: 156 LERLRGRLAKSQNALGRSVLGLIGGGDLDEDSWQDVEDTLLVADLGPVVTEAVVSQLRSR 215 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-------PHVILVVGVNGVGKTT 126 + +V R D ++ +L+ +P + D S R P V+LVVGVNG GKTT Sbjct: 216 LASGNV---RSEDDARAVLRDVLIKALQP-DMDRSIRALPHPDHPSVLLVVGVNGTGKTT 271 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 +GKL++ + G +V+L A DTFR+AA QL+ WA R A+ V G+D A++A++A Sbjct: 272 TVGKLARVLVADGRRVVLGAADTFRAAAAVQLQTWAARVGAEVVSGAEGADPASVAFDAV 331 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A DV++IDTAGRLH LM +GK+ R++ R A VL VLDAT GQN L Sbjct: 332 DKGVAAGADVILIDTAGRLHTKVGLMDELGKVKRLVTRR--AAVDEVLLVLDATIGQNGL 389 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 Q ++F V TG+++TK+DGTA+GG + + +PV +G+GEG +DL PF Sbjct: 390 AQAKVFAEVVDITGVVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPF 444 >gi|188024295|ref|ZP_02570025.2| signal recognition particle-docking protein FtsY [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188018969|gb|EDU57009.1| signal recognition particle-docking protein FtsY [Ureaplasma urealyticum serovar 7 str. ATCC 27819] Length = 351 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 106/294 (36%), Positives = 170/294 (57%), Gaps = 7/294 (2%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 I K +G +S L I ++ + +++ E LE++LI D+G KI+E + Sbjct: 41 INKFNEGLRKSSSALTNAINELATKYIDINEEWYEHLEEVLIGYDVGYVATNKIIESIRN 100 Query: 73 KRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + + V+ ++ ++ D + + ++ N ++ +V+LVVGVNGVGKTT I Sbjct: 101 EMIYQKVNDPELIKSIIIDKIFIYYIQDTEINTEINLK-QNQTNVVLVVGVNGVGKTTSI 159 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAAALAYEAFK 187 K++KK + KV+L AGDTFR+ A++QLK+WA R + D + G D A++ Y K Sbjct: 160 AKITKKFINENKKVLLVAGDTFRAGAVEQLKVWAQRLNVDIELPIKEGQDPASVIYAGVK 219 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 + +K D++I DT+GRL N LM + K+ ++ + D HAPH L VLDAT GQ+ + Sbjct: 220 KGYEQKYDLVICDTSGRLQNKINLMNELKKIHDIIHKFDEHAPHETLLVLDATQGQSGIN 279 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 Q + F+ V +G+I+TKMD T+RGG ++ I IPV +G+GE ++DL F Sbjct: 280 QAKAFNEVTKISGIILTKMDSTSRGGIVLAIKDAFNIPVKLIGLGEKLDDLSVF 333 >gi|33860570|ref|NP_892131.1| signal recognition particle docking protein FtsY [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633512|emb|CAE18469.1| signal recognition particle docking protein FtsY [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 440 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 108/315 (34%), Positives = 174/315 (55%), Gaps = 21/315 (6%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +++ + + W+ KL +G T + D + L ++LE LLIR+D+G+ Sbjct: 126 EISIDEIDWLSKLRRGLEETRKGFVSELLDKLGDDPLTPESLDDLETLLIRADVGIDSTD 185 Query: 65 KIVEELLTK------------RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112 K++ L K ++ KD + + +L+P N Sbjct: 186 KVINALRKKLNEEVVGGEEGIKFLKDELRAIIEKPIKNSGTNILVPQKGKLN-------- 237 Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 V L+VGVNGVGKTT +GKL+ S + K ++AA DTFR+AA++QL++W DR+ D + + Sbjct: 238 VWLIVGVNGVGKTTTLGKLAYLSSKSNYKTLIAAADTFRAAAVEQLQVWGDRSKVDVISN 297 Query: 173 EI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 + +D AA+ ++A A +K D+L++DTAGRL N + LM + K+ +++ + P A Sbjct: 298 QSKNADPAAVVFDAINAANKRKSDLLLVDTAGRLQNKNNLMDELSKIKKIIDKKVPDAII 357 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 L VLDA+ GQN L+Q + F A +G I+TK+DGT+RGG + + +P+ F+G Sbjct: 358 ESLLVLDASQGQNGLKQAKSFAKSANLSGAIITKLDGTSRGGVSLAVSAEVNLPIRFIGA 417 Query: 292 GEGINDLEPFVAKDF 306 GEGI DL PF + +F Sbjct: 418 GEGIKDLRPFNSFEF 432 >gi|295698250|ref|YP_003602905.1| signal recognition particle-docking protein FtsY [Candidatus Riesia pediculicola USDA] gi|291157249|gb|ADD79694.1| signal recognition particle-docking protein FtsY [Candidatus Riesia pediculicola USDA] Length = 310 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 91/263 (34%), Positives = 155/263 (58%), Gaps = 5/263 (1%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107 E+E+ L+ DIG++ + I++++ + ++ + +Y + + + ++ LSK N Sbjct: 41 EVEEQLLSLDIGISTTKLIIDQIKKQINTQNFNEIDKIYSIIKRTMQDILNLSKK-NCYI 99 Query: 108 SHRP---HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 S + +IL GVNGVGKT + KL+ G K + DTFR+A+I+Q KI +D+ Sbjct: 100 SKKVDSLKIILFFGVNGVGKTISVFKLANTYMKKGKKTAVVCADTFRAASIEQTKILSDQ 159 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + S+ DAA++ +++ K + +K + +IIDTAGRL N L+ + K+ RV+K Sbjct: 160 YNIPIFFSKNKKDAASVVFDSIKFLKKEKSIQFIIIDTAGRLENKINLIEELRKITRVIK 219 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 +L + VLD+T GQN++ Q ++F+ TG+ +TK+DGTARGG + PI+ K Sbjct: 220 KLYDQPYFEKILVLDSTIGQNSIHQAKIFYNSVQPTGIFLTKLDGTARGGIIFPIINFFK 279 Query: 284 IPVYFLGVGEGINDLEPFVAKDF 306 IP+ ++G GE IND++ F + F Sbjct: 280 IPIKYIGFGESINDIKEFNQEHF 302 >gi|189440099|ref|YP_001955180.1| signal recognition particle GTPase [Bifidobacterium longum DJO10A] gi|189428534|gb|ACD98682.1| Signal recognition particle GTPase [Bifidobacterium longum DJO10A] Length = 423 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 112/304 (36%), Positives = 174/304 (57%), Gaps = 15/304 (4%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S + +L A + + + DI++ L + E++ED L+ +D+G + ++V++L Sbjct: 120 SRLTRLKAKLAKSGNPFGKALFDILAKDNLSEADWEDVEDTLLLADVGADASAQLVDDLR 179 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVG 123 T R V + E + ++ + KP + +P VI++VGVNG G Sbjct: 180 TDARITGKADPAEVRATLKEKLLDLVGRDTDRRLNAEKPG----AAKPSVIIMVGVNGTG 235 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALA 182 KTT GKL++ +VM+ A DTFR+AA DQL+ W R + V S+ G+D A++A Sbjct: 236 KTTTAGKLARLFVAENKQVMMGAADTFRAAAADQLETWGARVNVPVVRSDKDGADPASVA 295 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 +EA +A+ DVLIIDTAGRL N S LM +GK+ RV ++ P VL VLDATTG Sbjct: 296 FEASAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLPV--DEVLLVLDATTG 353 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QN + Q ++F G TG++++K+DG+A+GG +I + +PV +G+GEG +DL PF Sbjct: 354 QNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAPFD 413 Query: 303 AKDF 306 + F Sbjct: 414 PEGF 417 >gi|23335671|ref|ZP_00120905.1| COG0552: Signal recognition particle GTPase [Bifidobacterium longum DJO10A] Length = 425 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 112/304 (36%), Positives = 174/304 (57%), Gaps = 15/304 (4%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S + +L A + + + DI++ L + E++ED L+ +D+G + ++V++L Sbjct: 122 SRLTRLKAKLAKSGNPFGKALFDILAKDNLSEADWEDVEDTLLLADVGADASAQLVDDLR 181 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVG 123 T R V + E + ++ + KP + +P VI++VGVNG G Sbjct: 182 TDARITGKADPAEVRATLKEKLLDLVGRDTDRRLNAEKPG----AAKPSVIIMVGVNGTG 237 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALA 182 KTT GKL++ +VM+ A DTFR+AA DQL+ W R + V S+ G+D A++A Sbjct: 238 KTTTAGKLARLFVAENKQVMMGAADTFRAAAADQLETWGARVNVPVVRSDKDGADPASVA 297 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 +EA +A+ DVLIIDTAGRL N S LM +GK+ RV ++ P VL VLDATTG Sbjct: 298 FEASAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLPV--DEVLLVLDATTG 355 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QN + Q ++F G TG++++K+DG+A+GG +I + +PV +G+GEG +DL PF Sbjct: 356 QNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAPFD 415 Query: 303 AKDF 306 + F Sbjct: 416 PEGF 419 >gi|296109711|ref|YP_003616660.1| signal recognition particle-docking protein FtsY [Methanocaldococcus infernus ME] gi|295434525|gb|ADG13696.1| signal recognition particle-docking protein FtsY [Methanocaldococcus infernus ME] Length = 370 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 104/276 (37%), Positives = 162/276 (58%), Gaps = 21/276 (7%) Query: 56 SDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYD-----VSELIHKMLMPLSKPFNWD 106 +D+ + V +K+++ EL+ K+ + D +V+ ++Y+ + ++ + + L + + Sbjct: 98 ADVALEVVEKMIDSIKKELVGKKISPDDNVEEIVYNAVKNSILNILSREKIDLEEIIQKN 157 Query: 107 FSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 +P VI+ VG+NG GKTT I KL+ K+ + G V+LAAGDTFR+ AI+QL+ A R Sbjct: 158 RKEGKPTVIVFVGINGTGKTTSIAKLAYKLKNKGYSVVLAAGDTFRAGAIEQLEEHAKRI 217 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + G+DAAA+ Y+A + A+AKK+DV++ DTAGR N LM I K++RV K Sbjct: 218 GVKVIKQKPGADAAAVIYDAIQHAKAKKIDVVLADTAGRQATNINLMDEIKKVVRVTK-- 275 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P V+ V DA TG +A+ Q E F+ G G+I+TK+D A+GG I I P Sbjct: 276 ----PDLVIFVADALTGNDAIFQAEEFNKAVGIDGVILTKVDADAKGGAAISIGYAIGKP 331 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEKI 321 + +LGVG+ DL F + DF +I +GEE I Sbjct: 332 ILYLGVGQRYEDLIEF-SPDF--IIKKI--FGEEDI 362 >gi|41409087|ref|NP_961923.1| hypothetical protein MAP2989c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397446|gb|AAS05306.1| FtsY [Mycobacterium avium subsp. paratuberculosis K-10] Length = 444 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 109/276 (39%), Positives = 162/276 (58%), Gaps = 9/276 (3%) Query: 42 DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLM 97 D+ +++ED L+ +D+G V + ++ +L + + DV + VL DV LI+++ Sbjct: 173 DEDAWQDVEDTLLVADLGPVVTESVIAQLRGRLASSDVRTEADAKAVLRDV--LINELRP 230 Query: 98 PLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 L + + P V+L+VGVNG GKTT +GKL++ + G +V+L A DTFR+AA D Sbjct: 231 DLDRSIRALPHADHPSVLLIVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAAD 290 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL+ WA R A+ V G+D A++A++A + A DV++IDTAGRLH LM + Sbjct: 291 QLQTWASRVGAEVVRGAEGADPASVAFDAVDKGIAAGADVVLIDTAGRLHTKVGLMDELD 350 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 K+ RV+ R A VL VLDAT GQN L Q +F V TG ++TK+DGTA+GG + Sbjct: 351 KVKRVVTRC--AAVDEVLLVLDATIGQNGLAQARVFAEVVEITGAVLTKLDGTAKGGIVF 408 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + +PV +G+GEG +DL PF F + G Sbjct: 409 RVQQELGVPVKLVGLGEGPDDLAPFEPAAFVDALLG 444 >gi|312133444|ref|YP_004000783.1| ftsy [Bifidobacterium longum subsp. longum BBMN68] gi|311772675|gb|ADQ02163.1| FtsY [Bifidobacterium longum subsp. longum BBMN68] Length = 423 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 112/304 (36%), Positives = 174/304 (57%), Gaps = 15/304 (4%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S + +L A + + + DI++ L + E++ED L+ +D+G + ++V++L Sbjct: 120 SRLTRLKAKLAKSGNPFGKALFDILAKDNLSEADWEDVEDTLLLADVGADASAQLVDDLR 179 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVG 123 T R V + E + ++ + KP + +P VI++VGVNG G Sbjct: 180 TDARITGKADPAEVRATLKEKLLDLVGRDTDRRLNAEKPG----AAKPSVIIMVGVNGTG 235 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALA 182 KTT GKL++ +VM+ A DTFR+AA DQL+ W R + V S+ G+D A++A Sbjct: 236 KTTTAGKLARLFVAENKQVMMGAADTFRAAAADQLETWGARVNVPVVRSDKDGADPASVA 295 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 +EA +A+ DVLIIDTAGRL N S LM +GK+ RV ++ P VL VLDATTG Sbjct: 296 FEASAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLPV--DEVLLVLDATTG 353 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QN + Q ++F G TG++++K+DG+A+GG +I + +PV +G+GEG +DL PF Sbjct: 354 QNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAPFD 413 Query: 303 AKDF 306 + F Sbjct: 414 PEGF 417 >gi|294790256|ref|ZP_06755414.1| signal recognition particle-docking protein FtsY [Scardovia inopinata F0304] gi|294458153|gb|EFG26506.1| signal recognition particle-docking protein FtsY [Scardovia inopinata F0304] Length = 395 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 117/303 (38%), Positives = 175/303 (57%), Gaps = 11/303 (3%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S I +L A+++ + + I++ L + E++ED L+ +D+G ++ +V +L Sbjct: 89 SRIVRLRSELAASANPFGKVLFSILTRDNLSESDWEDVEDTLLLADVGADTSEDLVNQLK 148 Query: 72 TKRY---AKDVSVQRVLYDVSELIH----KMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 T KD +V R + S L++ M L+ D S P I++VGVNG GK Sbjct: 149 TDARITGQKDPAVVRSMLR-SRLLNLVDSTMDRSLAAHRQKDDSTVPSAIIMVGVNGSGK 207 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAY 183 TT GKL++ G V+L A DTFR+AA DQL+ W R + V S+ G+D A++A+ Sbjct: 208 TTTAGKLARLFVAEGKSVILGAADTFRAAAADQLETWGSRINVPVVRSDHEGADPASVAF 267 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 EA ++A+ DVLIIDTAGRL N + LM +GK+ RV ++ P VL VLDATTGQ Sbjct: 268 EAAQKARDSHADVLIIDTAGRLQNKANLMDELGKIRRVTEKTLPV--DEVLLVLDATTGQ 325 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 N L Q +F G TG+++TK+DG+A+GG +I + +PV +G+GEG +DL F Sbjct: 326 NGLEQARVFSQAIGITGVVLTKLDGSAKGGIVISVQKALGVPVKLVGLGEGPDDLSDFDP 385 Query: 304 KDF 306 + F Sbjct: 386 ESF 388 >gi|123965244|ref|YP_001010325.1| signal recognition particle docking protein FtsY [Prochlorococcus marinus str. MIT 9515] gi|123199610|gb|ABM71218.1| signal recognition particle docking protein FtsY [Prochlorococcus marinus str. MIT 9515] Length = 415 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 106/316 (33%), Positives = 176/316 (55%), Gaps = 21/316 (6%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 +++ + + W+ KL KG T + D + L ++LE LLIR+D+G+ Sbjct: 100 NEISIDEIDWLSKLRKGLEETRKGFVTELLDKLGDDPLTPESLDDLETLLIRADVGIDST 159 Query: 64 QKIVEELLTKRYAKDVS----VQRVLYDVSELIHK--------MLMPLSKPFNWDFSHRP 111 K+++ L K + V ++ + ++ +I K +L+P N Sbjct: 160 DKVIDSLRKKLNEEVVGGEEGIKFLKGELRAIIDKPIKDSGINILVPQKGKLN------- 212 Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 V L+VGVNGVGKTT +GKL+ S + K ++AA DTFR+AA++QL++W R+ + + Sbjct: 213 -VWLIVGVNGVGKTTTLGKLAYLSSKSNYKTLIAAADTFRAAAVEQLQVWGHRSKVEVIS 271 Query: 172 SEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 ++ +D AA+ ++A A + D+L++DTAGRL + LM + K+ R++ + P A Sbjct: 272 NQSKNADPAAVVFDALNAANKRNSDLLLVDTAGRLQTKNNLMDELSKIKRIIDKKVPDAI 331 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 L VLDA+ GQN L+Q + F A +G ++TK+DGT+RGG + + +P+ F+G Sbjct: 332 VESLLVLDASQGQNGLKQAKSFAKSANLSGAVITKLDGTSRGGVSLAVSAEVNLPIRFIG 391 Query: 291 VGEGINDLEPFVAKDF 306 GEGI DL PF + +F Sbjct: 392 AGEGIKDLRPFNSFEF 407 >gi|269792626|ref|YP_003317530.1| signal recognition particle-docking protein FtsY [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100261|gb|ACZ19248.1| signal recognition particle-docking protein FtsY [Thermanaerovibrio acidaminovorans DSM 6589] Length = 309 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 112/312 (35%), Positives = 177/312 (56%), Gaps = 12/312 (3%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + +++K+ + + G+ +I S + D E LE+ LI D+GVA+A+++V +L Sbjct: 2 IGFLKKVFDKVRDVKSRWEYGLRNIFSDEPITDEFFERLEEHLIAGDVGVALAERLVSDL 61 Query: 71 LTKRYAKDVSV-------QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 KR+A++ + +R + +++ + L SK + F+ +IL++GVNG G Sbjct: 62 --KRHAQEKRLSNATELKERFGQMLKDMLGEGLGGASKGLS--FNGPVGLILLIGVNGSG 117 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT KL+K + G V+LAA DTFR+AAIDQLK+W R V + G D+AA+ Y Sbjct: 118 KTTTAAKLAKLLKGQGNNVVLAAADTFRAAAIDQLKVWGARAGVRVVAQDPGGDSAAVVY 177 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A + ++ ++I DTAGRLH LM + K+ RV +R L VLDA TGQ Sbjct: 178 DAIQSVKSTG-GIVIADTAGRLHTKHNLMEELAKIYRVARRDVGEEDIFPLLVLDAITGQ 236 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NA+ Q F+ G+++TK D TA+GG ++ + K+PV ++G+GEGI+D+ PF Sbjct: 237 NAISQARSFNGAMPLRGVVLTKFDHTAKGGAVLALSSELKVPVLYVGIGEGIDDMAPFSP 296 Query: 304 KDFSAVITGCLD 315 DF + G D Sbjct: 297 DDFVEDLLGGGD 308 >gi|229258566|gb|ACQ45588.1| cell division protein FtsY [Vesicomya sp. endosymbiont] Length = 194 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 82/192 (42%), Positives = 120/192 (62%), Gaps = 7/192 (3%) Query: 82 QRVLYDVSELIHKMLMPLSK------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 ++ L D L + L+K FN + + VILVVGVNG GKTT+IGK++K Sbjct: 4 RKTLKDAERLYQFLKNELAKLLVEDNQFNTNI-NETFVILVVGVNGAGKTTLIGKMAKSF 62 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 + G VMLAAGDTFR+AAI+QLK+W R V G+DA ++ ++A++ AQAK +D Sbjct: 63 QNQGKSVMLAAGDTFRAAAIEQLKVWGQRNDIPVVAQTTGADATSVIFDAYQSAQAKNID 122 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 +LI DTAGRLH + LM + K+ RV+ + + +APH + V+D GQNA+ Q + F+ Sbjct: 123 ILIADTAGRLHTQNNLMQELAKIKRVISKQNANAPHETMLVIDGGLGQNAINQAKEFNKA 182 Query: 256 AGTTGLIMTKMD 267 +G+ +TK+D Sbjct: 183 VALSGISITKLD 194 >gi|291517568|emb|CBK71184.1| signal recognition particle-docking protein FtsY [Bifidobacterium longum subsp. longum F8] Length = 425 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 111/304 (36%), Positives = 174/304 (57%), Gaps = 15/304 (4%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S + +L A + + + DI++ L + E++ED L+ +D+G + ++V++L Sbjct: 122 SRLTRLKAKLAKSGNPFGKALFDILAKDNLSEADWEDVEDTLLLADVGADASAQLVDDLR 181 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVG 123 T R V + E + ++ + KP + +P +I++VGVNG G Sbjct: 182 TDARITGKADPAEVRATLKEKLLDLVGRDTDRRLNAEKPG----AAKPSIIIMVGVNGTG 237 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALA 182 KTT GKL++ +VM+ A DTFR+AA DQL+ W R + V S+ G+D A++A Sbjct: 238 KTTTAGKLARLFVAENKQVMMGAADTFRAAAADQLETWGARVNVPVVRSDKDGADPASVA 297 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 +EA +A+ DVLIIDTAGRL N S LM +GK+ RV ++ P VL VLDATTG Sbjct: 298 FEASAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLPV--DEVLLVLDATTG 355 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QN + Q ++F G TG++++K+DG+A+GG +I + +PV +G+GEG +DL PF Sbjct: 356 QNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAPFD 415 Query: 303 AKDF 306 + F Sbjct: 416 PEGF 419 >gi|158312998|ref|YP_001505506.1| signal recognition particle-docking protein FtsY [Frankia sp. EAN1pec] gi|158108403|gb|ABW10600.1| signal recognition particle-docking protein FtsY [Frankia sp. EAN1pec] Length = 431 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 110/276 (39%), Positives = 158/276 (57%), Gaps = 12/276 (4%) Query: 37 SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL------LTKRYAKDVSVQRVLYDVSE 90 S LD+ E++E L+ +D+GV ++VE L L R A D + +L D E Sbjct: 153 SGDNLDEEAWEDVEATLLVADVGVTATAEMVEALRERTRVLGARTAADARM--MLRD--E 208 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 L+ ++ + RP V+LVVGVNG GKTT GK+++ + G V+L A DTF Sbjct: 209 LLAQVGTTTDRSLRTSAPDRPAVVLVVGVNGTGKTTTCGKIARLLVADGRSVVLGAADTF 268 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R+AA DQL+ W R A V G+D A++A+EA K+ D +++DTAGRLH Sbjct: 269 RAAAADQLETWGGRVGATTVRGAEGADPASVAFEAVKRGIDDGADTVLVDTAGRLHTKVG 328 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + K+ RV+ + P VL VLD+TTGQNAL Q +F TG+++TK+DGTA Sbjct: 329 LMDELTKIKRVVGKQSPV--DEVLLVLDSTTGQNALVQARVFTEAVDITGVVLTKLDGTA 386 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +GG +I + +PV +G+GEG +DL PF + F Sbjct: 387 KGGIVIAVQRELGVPVKLIGLGEGPDDLAPFEPEAF 422 >gi|23465034|ref|NP_695637.1| FtsY signal recognition particle [Bifidobacterium longum NCC2705] gi|239622641|ref|ZP_04665672.1| FtsY signal recognition particle [Bifidobacterium longum subsp. infantis CCUG 52486] gi|322688369|ref|YP_004208103.1| signal recognition particle-docking protein [Bifidobacterium longum subsp. infantis 157F] gi|23325639|gb|AAN24273.1| FtsY signal recognition particle [Bifidobacterium longum NCC2705] gi|239514638|gb|EEQ54505.1| FtsY signal recognition particle [Bifidobacterium longum subsp. infantis CCUG 52486] gi|320459705|dbj|BAJ70325.1| signal recognition particle-docking protein [Bifidobacterium longum subsp. infantis 157F] Length = 420 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 111/304 (36%), Positives = 174/304 (57%), Gaps = 15/304 (4%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S + +L A + + + DI++ L + E++ED L+ +D+G + ++V++L Sbjct: 117 SRLTRLKAKLAKSGNPFGKALFDILAKDNLSEADWEDVEDTLLLADVGADASAQLVDDLR 176 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVG 123 T R V + E + ++ + KP + +P VI++VGVNG G Sbjct: 177 TDARITGKADPAEVRATLKEKLLDLVGRDTDRRLNAEKPG----AAKPSVIIMVGVNGTG 232 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALA 182 KTT GKL++ +VM+ A DTFR+AA DQL+ W R + V S+ G+D A++A Sbjct: 233 KTTTAGKLARLFVAENKQVMMGAADTFRAAAADQLETWGARVNVPVVRSDKDGADPASVA 292 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 +EA +A+ DVLIIDTAGRL N S LM +GK+ RV ++ P VL VLDATTG Sbjct: 293 FEASAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLPV--DEVLLVLDATTG 350 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QN + Q ++F G TG++++K+DG+A+GG ++ + +PV +G+GEG +DL PF Sbjct: 351 QNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVVSVQKELGVPVKLVGLGEGPDDLAPFD 410 Query: 303 AKDF 306 + F Sbjct: 411 PEGF 414 >gi|317482722|ref|ZP_07941735.1| signal recognition particle-docking protein FtsY [Bifidobacterium sp. 12_1_47BFAA] gi|322690389|ref|YP_004219959.1| signal recognition particle-docking protein [Bifidobacterium longum subsp. longum JCM 1217] gi|316915845|gb|EFV37254.1| signal recognition particle-docking protein FtsY [Bifidobacterium sp. 12_1_47BFAA] gi|320455245|dbj|BAJ65867.1| signal recognition particle-docking protein [Bifidobacterium longum subsp. longum JCM 1217] Length = 425 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 111/304 (36%), Positives = 174/304 (57%), Gaps = 15/304 (4%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S + +L A + + + DI++ L + E++ED L+ +D+G + ++V++L Sbjct: 122 SRLTRLKAKLAKSGNPFGKALFDILAKDNLSEADWEDVEDTLLLADVGADASAQLVDDLR 181 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVG 123 T R V + E + ++ + KP + +P VI++VGVNG G Sbjct: 182 TDARITGKADPAEVRATLKEKLLDLVGRDTDRRLNAEKPG----AAKPSVIIMVGVNGTG 237 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALA 182 KTT GKL++ +VM+ A DTFR+AA DQL+ W R + V S+ G+D A++A Sbjct: 238 KTTTAGKLARLFVAENKQVMMGAADTFRAAAADQLETWGARVNVPVVRSDKDGADPASVA 297 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 +EA +A+ DVLIIDTAGRL N S LM +GK+ RV ++ P VL VLDATTG Sbjct: 298 FEASAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLPV--DEVLLVLDATTG 355 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QN + Q ++F G TG++++K+DG+A+GG ++ + +PV +G+GEG +DL PF Sbjct: 356 QNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVVSVQKELGVPVKLVGLGEGPDDLAPFD 415 Query: 303 AKDF 306 + F Sbjct: 416 PEGF 419 >gi|229258564|gb|ACQ45587.1| cell division protein FtsY [Vesicomya sp. endosymbiont] Length = 194 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 74/159 (46%), Positives = 110/159 (69%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + VILVVGVNG GKTT+IGKL+K + G VMLAAGDTFR+AA++QLK+W +R Sbjct: 36 NETFVILVVGVNGAGKTTLIGKLAKSFQNQGKSVMLAAGDTFRAAAVEQLKVWGERNQIP 95 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + G+DAA++ ++A++ AQAK +D+LI DTAGRLH LM + K+ RV+ + + + Sbjct: 96 VIAQTTGADAASVIFDAYQSAQAKNIDILIADTAGRLHTQDNLMQELAKIKRVIAKQNAN 155 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 APH + ++D +GQNA+ Q + F+ +G+ +TK+D Sbjct: 156 APHETMLIIDGGSGQNAINQAKEFNKAVTLSGISITKLD 194 >gi|16082103|ref|NP_394537.1| signal recognition particle protein [Thermoplasma acidophilum DSM 1728] gi|10640391|emb|CAC12205.1| probable signal recognition particle protein [Thermoplasma acidophilum] Length = 288 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 90/279 (32%), Positives = 163/279 (58%), Gaps = 16/279 (5%) Query: 27 KLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85 KLK+ +I +++D D V +E+ L+ +D+ + A+ + L+ + +D ++ Sbjct: 4 KLKKKFAEIFHRKKIDPDEVADEIPLKLVEADVSLEAAEDLAS-LVRNKLKEDTTL---- 58 Query: 86 YDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 D +E++ ++ + + +D + +P V+L +G+NG GKTT IGK + + G V Sbjct: 59 -DPNEVLSSSILEMMPEYKFDVLNVNKKPFVVLFLGINGTGKTTTIGKFAHYLKRNGKSV 117 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 ++AA DTFR+ AI+Q+ + + + + GSD +++A++A + A+A+ +D ++IDTA Sbjct: 118 VIAAADTFRAGAIEQISLIGREAGTEVIRHDRGSDPSSVAFDAIEHARARNIDYVLIDTA 177 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GR++ N L+ + K+ RV K P L V+DA +GQ+++ Q MF G G+I Sbjct: 178 GRMNTNKNLLDEMKKIKRVSK------PDLTLLVIDAVSGQDSVNQARMFEENVGYDGVI 231 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +TK+D ARGG ++ I K PV F+ G+G++D+ PF Sbjct: 232 VTKLDTDARGGSILSIYHDLKKPVLFVCTGQGLDDIMPF 270 >gi|317506050|ref|ZP_07963879.1| signal recognition particle-docking protein FtsY [Segniliparus rugosus ATCC BAA-974] gi|316255654|gb|EFV14895.1| signal recognition particle-docking protein FtsY [Segniliparus rugosus ATCC BAA-974] Length = 505 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 107/267 (40%), Positives = 158/267 (59%), Gaps = 13/267 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 E++E L+ +D+G + + ++E+L R A S R + ++ +L+ KP +D Sbjct: 239 EDVEATLLTADLGASTTEGVIEKL---REALARSEVRSEAEARAVLKDVLVAELKP-EFD 294 Query: 107 FS-------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 S RP V+LVVGVNG GKTT GKL++ + G +V+L A DTFR+AA++QLK Sbjct: 295 RSVRALPHADRPSVVLVVGVNGTGKTTTTGKLARVLVADGRRVLLGAADTFRAAAVEQLK 354 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 W R A+ V G+D A++A+EA + DV++IDTAGRLH + LM +GK+ Sbjct: 355 TWGQRVGAEVVAGAEGADPASVAFEAVSRGVEAGADVVLIDTAGRLHTKTGLMDELGKIK 414 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 RV++R V+ VLDAT GQN L Q ++F V TG+ +TK+DGTA+GG + + Sbjct: 415 RVVERK--AGVDEVILVLDATIGQNGLLQAKVFSEVVDVTGVALTKLDGTAKGGIVFAVQ 472 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDF 306 +PV +G+GEG +DL PF F Sbjct: 473 KELGVPVKLVGLGEGKDDLAPFEPNAF 499 >gi|271969191|ref|YP_003343387.1| cell division membrane protein [Streptosporangium roseum DSM 43021] gi|270512366|gb|ACZ90644.1| cell division membrane protein [Streptosporangium roseum DSM 43021] Length = 394 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 118/273 (43%), Positives = 169/273 (61%), Gaps = 13/273 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTK------RYAKDVSVQRVLYDVSELIHKMLMPLS 100 +E+E+ LI +D+GVA + +VEEL T+ R ++V R L EL+ ++ + L Sbjct: 127 DEIEETLITADVGVAPTRAMVEELRTRVKVLGSRSPEEV---RGLLK-EELLTQLGVDLD 182 Query: 101 KPFNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 + + RP V+LVVGVNG GKTT GKL++ + G KV+L A DTFR+AA DQL+ Sbjct: 183 RTLHVKPHGERPAVVLVVGVNGTGKTTTTGKLARSLIGDGNKVVLGAADTFRAAAADQLQ 242 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 W DR A+ V G D A++A++A + KVDV+I+DTAGRLH + LM +GK+ Sbjct: 243 TWGDRVGAEVVRGPEGGDPASIAFDAVAKGIEDKVDVVIVDTAGRLHTKTGLMDELGKVK 302 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 RV+++ VL VLDATTGQN +RQ +F V TG+ +TK+DGTA+GG +I + Sbjct: 303 RVIEK--KATVDEVLLVLDATTGQNGMRQARVFAEVVDVTGIALTKLDGTAKGGIIISVQ 360 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +PV +G+GEG +DL PF A+ F + G Sbjct: 361 RELGVPVKLVGLGEGPDDLAPFDAEVFVDTLLG 393 >gi|297527350|ref|YP_003669374.1| signal recognition particle-docking protein FtsY [Staphylothermus hellenicus DSM 12710] gi|297256266|gb|ADI32475.1| signal recognition particle-docking protein FtsY [Staphylothermus hellenicus DSM 12710] Length = 295 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 98/303 (32%), Positives = 163/303 (53%), Gaps = 25/303 (8%) Query: 13 WIRKLTKGF------ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 R++ K F AS+ L +E + D+I + + L+ +D+ VA++I Sbjct: 1 MFRRIKKAFSKFIDKASSLLFSREQLLDLIDEFKFE----------LVSNDVAYDVAEEI 50 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVG 123 +L+ K V + L D + K +P N + +P++I+ +GVNGVG Sbjct: 51 AAKLVEAVENKIVKDKETLMDFLKKTIKSYFDSVEPINIFYEASKTKPYIIVFLGVNGVG 110 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT I K + + G K ++ A DTFR+ A +QL++ +RT + G+D A++A+ Sbjct: 111 KTTTIAKTAVLFKEKGFKPLMVAADTFRAGAQEQLRVHGERTGIPVFMGKYGADPASIAF 170 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A + A+ + DV++IDTAGR+H +S L+ + K+IRV K PH + V+DA TG Sbjct: 171 DAIRHAETRGYDVVLIDTAGRMHTDSNLVDELRKIIRVAK------PHRKILVVDALTGN 224 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 +A+ Q F G +I+TK+D +GG + IV + + P+ +GVG+G DL+PF Sbjct: 225 DAIEQAVFFDKAVGVDAVIVTKVDAYEQGGVPLSIVYSIRKPIIMIGVGQGYKDLKPFNI 284 Query: 304 KDF 306 +F Sbjct: 285 DEF 287 >gi|227545683|ref|ZP_03975732.1| signal recognition particle GTPase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213799|gb|EEI81638.1| signal recognition particle GTPase [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 425 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 111/304 (36%), Positives = 174/304 (57%), Gaps = 15/304 (4%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S + +L A + + + DI++ L + E++ED L+ +D+G + ++V++L Sbjct: 122 SRLTRLKAKLAKSGNPFGKALFDILAKDNLSEADWEDVEDTLLLADVGADASAQLVDDLR 181 Query: 72 TK-RYAKDVSVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVG 123 T R V + E + ++ + KP + +P VI++VGVNG G Sbjct: 182 TDARITGKADPAEVRATLKEKLLDLVGRDTDRRLNAEKPG----AAKPSVIIMVGVNGTG 237 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALA 182 KTT GKL++ +VM+ A DTFR+AA DQL+ W R + V S+ G+D A++A Sbjct: 238 KTTTAGKLARLFVAENKQVMMGAADTFRAAAADQLETWGARVNVTVVRSDKDGADPASVA 297 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 +EA +A+ DVLIIDTAGRL N S LM +GK+ RV ++ P VL VLDATTG Sbjct: 298 FEASAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLPV--DEVLLVLDATTG 355 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QN + Q ++F G TG++++K+DG+A+GG ++ + +PV +G+GEG +DL PF Sbjct: 356 QNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVVSVQKELGVPVKLVGLGEGPDDLAPFD 415 Query: 303 AKDF 306 + F Sbjct: 416 PEGF 419 >gi|329947903|ref|ZP_08294835.1| signal recognition particle-docking protein FtsY [Actinomyces sp. oral taxon 170 str. F0386] gi|328523527|gb|EGF50625.1| signal recognition particle-docking protein FtsY [Actinomyces sp. oral taxon 170 str. F0386] Length = 389 Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 111/280 (39%), Positives = 168/280 (60%), Gaps = 19/280 (6%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFN 104 EE+ED L+ SD+G+ V +++EL T+ S + V +EL+ + L + N Sbjct: 115 EEIEDTLLTSDLGIEVTTSLMDELRTQAKVLGTSDPEAVRTVLRAELLKLVDPSLDRSLN 174 Query: 105 WDFSHRPH-----------VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 D RP IL+VGVNG GKTT GKL++ + V+L A DTFR+A Sbjct: 175 LD---RPTPADGAQGTPAAAILMVGVNGTGKTTTCGKLARVLVAQDKTVVLGAADTFRAA 231 Query: 154 AIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 A +QL W +R D V SE G+D A++AY+A ++A ++ DV+++DTAGRL N + LM Sbjct: 232 AAEQLSTWGERVGVDVVRSEKEGADPASVAYDAARRAADQEADVVVVDTAGRLQNKAGLM 291 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 +GK+ RV++++ P +L VLDATTGQN +RQ ++F G TG+++TK+DGTA+G Sbjct: 292 DELGKIKRVMEKIAPVG--EILLVLDATTGQNGMRQAQVFSEAVGITGIVLTKLDGTAKG 349 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 G ++ + +PV +G+GEG +DL PF + F + G Sbjct: 350 GIVVTVQRELGVPVKLVGLGEGADDLAPFDPEGFVDALLG 389 >gi|291455918|ref|ZP_06595308.1| signal recognition particle-docking protein FtsY [Bifidobacterium breve DSM 20213] gi|291382327|gb|EFE89845.1| signal recognition particle-docking protein FtsY [Bifidobacterium breve DSM 20213] Length = 421 Score = 162 bits (409), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 111/304 (36%), Positives = 178/304 (58%), Gaps = 15/304 (4%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S + +L A + + + DI++ L + E++ED L+ +D+G + ++V++L Sbjct: 118 SRLTRLKAKLAKSGNPFGKALFDILAKDNLSESDWEDVEDTLLLADVGAEASAQLVDDLK 177 Query: 72 TKRY----AKDVSVQRVLYD-VSELIHK---MLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 T A V+ L D + +L+ + + + KP +++P VI++VGVNG G Sbjct: 178 TDARITGKADPAEVRATLKDKLLDLVGRDTDRRLNVEKPG----ANKPGVIIMVGVNGTG 233 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALA 182 KTT GKL++ +V++ A DTFR+AA DQL+ W R + V + G+D A++A Sbjct: 234 KTTTAGKLARLFVSEDKQVIMGAADTFRAAAADQLETWGARVNVPVVRADKDGADPASVA 293 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 +EA +A+ DVLIIDTAGRL N + LM +GK+ RV ++ P VL VLDATTG Sbjct: 294 FEASAKAKEANADVLIIDTAGRLQNKANLMDELGKIRRVTEKNLPV--DEVLLVLDATTG 351 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QN + Q ++F G TG++++K+DG+A+GG +I + +PV +G+GEG +DL PF Sbjct: 352 QNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAPFD 411 Query: 303 AKDF 306 + F Sbjct: 412 PEGF 415 >gi|229258576|gb|ACQ45593.1| cell division protein FtsY [Vesicomya sp. mt-I symbiont] Length = 194 Score = 162 bits (409), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 75/159 (47%), Positives = 109/159 (68%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + VILVVGVNG GKTT+IGK++K + G VMLAAGDTFR+AA++QLK+W R Sbjct: 36 NETFVILVVGVNGTGKTTLIGKMAKSFQNQGKSVMLAAGDTFRAAAVEQLKVWGQRNKTP 95 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V G+DAA++ ++A++ AQAK +DVLI DTAGRLH + LM + K+ RV+ + + + Sbjct: 96 VVAQTTGTDAASVIFDAYQSAQAKNIDVLIADTAGRLHTQNNLMQELAKIKRVIAKQNAN 155 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 APH + V+D +GQN + Q + F+ +G+ +TK+D Sbjct: 156 APHETMLVIDGGSGQNVINQAKEFNKAITLSGISITKLD 194 >gi|15827857|ref|NP_302120.1| SRP family GTP-binding protein [Mycobacterium leprae TN] gi|221230334|ref|YP_002503750.1| putative SRP family of GTP-binding protein [Mycobacterium leprae Br4923] gi|3334190|sp|O33010|FTSY_MYCLE RecName: Full=Cell division protein ftsY homolog gi|2251151|emb|CAB10596.1| FtsY protein [Mycobacterium leprae] gi|13093409|emb|CAC30579.1| possible SRP family of GTP-binding protein [Mycobacterium leprae] gi|219933441|emb|CAR71723.1| possible SRP family of GTP-binding protein [Mycobacterium leprae Br4923] Length = 430 Score = 162 bits (409), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 113/293 (38%), Positives = 165/293 (56%), Gaps = 13/293 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L A T I +I LD+ +ELED L+ +D+G + ++ L ++ Sbjct: 133 RLRGRLARTQNAFGRSILGLIVGGDLDEDSWQELEDTLLVADLGPVATESVMSALRSRLL 192 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-------PHVILVVGVNGVGKTTVI 128 +V + D ++ +L+ +P + D S R P V+L+VGVNG GKTT + Sbjct: 193 NSNVHTE---SDARTMLRDVLISELQP-DMDRSIRALPHADHPAVLLIVGVNGTGKTTTV 248 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL++ + G +V+L A DTFR+AA DQL+ WA R A+ V G+D A++A++A + Sbjct: 249 GKLARVLVADGRRVVLGAADTFRAAAADQLQTWASRVGAELVRGVEGADPASVAFDAVDK 308 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 DV++IDTAGRLH LM + K+ RV+ R A VL VLDAT GQN L Q Sbjct: 309 GIGAGADVVVIDTAGRLHTKVGLMDELDKIKRVVTRR--AAVDEVLLVLDATIGQNGLTQ 366 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 V +F V TG ++TK+DGTA+GG + I +PV +G+GEG +DL PF Sbjct: 367 VRVFAEVVDITGAVLTKLDGTAKGGIVFRIQRELGVPVKLVGLGEGPDDLAPF 419 >gi|229258572|gb|ACQ45591.1| cell division protein FtsY [Vesicomya sp. mt-III symbiont] Length = 194 Score = 162 bits (409), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 75/159 (47%), Positives = 110/159 (69%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + VILVVGVNG GKTT+IGK++K + G VMLAAGDTFR+AA++QLK+W R + Sbjct: 36 NETFVILVVGVNGAGKTTLIGKIAKSFQNQGKSVMLAAGDTFRAAAVEQLKVWGQRNNTP 95 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V G+DAA++ ++A + AQAK +D+LI DTAGRLH + LM + K+ RV+ + + + Sbjct: 96 VVAQTTGTDAASVIFDACQSAQAKNIDILIADTAGRLHTQNNLMQELAKIKRVIAKQNAN 155 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 APH + V+D +GQNA+ Q + F+ +G+ +TK+D Sbjct: 156 APHETMLVIDGGSGQNAINQAKEFNKAVTLSGISITKLD 194 >gi|229258554|gb|ACQ45582.1| cell division protein FtsY [Calyptogena kilmeri gill symbiont] Length = 194 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 75/159 (47%), Positives = 109/159 (68%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + VILVVGVNG GKTT+IGKL+K + G VMLAAGDTFR+AAI+QLKIW R + Sbjct: 36 NETFVILVVGVNGAGKTTLIGKLAKSFQNQGKSVMLAAGDTFRAAAIEQLKIWGQRNNIP 95 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V +G+D A++ ++A++ AQAK +D+L+ DTAGRLH LM + K+ RV+ + + + Sbjct: 96 VVAKTLGADTASVIFDAYQSAQAKNIDILLADTAGRLHTQDNLMQELAKIKRVINKQNIN 155 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 APH + V+D +GQN + Q + F+ +G+ +TK+D Sbjct: 156 APHETMLVIDGGSGQNVINQAKEFNKAVNLSGISITKLD 194 >gi|293189829|ref|ZP_06608543.1| signal recognition particle-docking protein FtsY [Actinomyces odontolyticus F0309] gi|292821244|gb|EFF80189.1| signal recognition particle-docking protein FtsY [Actinomyces odontolyticus F0309] Length = 413 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 117/302 (38%), Positives = 180/302 (59%), Gaps = 16/302 (5%) Query: 23 STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82 ++S L I ++S +L EE+E+ L+ +D+G+ ++E L + + V+ + Sbjct: 114 ASSGSLGRAILGVLSRGQLGAADWEEIEESLLIADLGLEATDTLMEALKRRVAVESVTDE 173 Query: 83 ---------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 +L V + + L L +P D S +P V+L+VGVNG GKTT +GKL++ Sbjct: 174 ARIREILREELLELVDPAMDRSLN-LERP-EVDGSGKPAVVLMVGVNGTGKTTTVGKLAR 231 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAK 192 + V+L A DTFR+AA DQL W +R D V S+ G+D A++A+EA ++ + Sbjct: 232 ILVAEDKSVILGAADTFRAAAADQLATWGERVGVDVVRSDREGADPASVAFEAVREGVDR 291 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS-VLQVLDATTGQNALRQVEM 251 VDV+++DTAGRL N S LM +GK+ RV+ + AP S VL VLDATTGQN ++Q E+ Sbjct: 292 DVDVVLVDTAGRLQNKSTLMDELGKIKRVMTK---QAPVSEVLLVLDATTGQNGMKQAEV 348 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F G TG+++TK+DG+A+GG ++ + +PV F+G+GEG +DL PF + F I Sbjct: 349 FAEATGVTGIVLTKLDGSAKGGIVVSVQRALGVPVKFVGLGEGADDLAPFDPQGFVDAIV 408 Query: 312 GC 313 G Sbjct: 409 GS 410 >gi|296242673|ref|YP_003650160.1| signal recognition particle-docking protein FtsY [Thermosphaera aggregans DSM 11486] gi|296095257|gb|ADG91208.1| signal recognition particle-docking protein FtsY [Thermosphaera aggregans DSM 11486] Length = 297 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 100/283 (35%), Positives = 164/283 (57%), Gaps = 19/283 (6%) Query: 27 KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY 86 K E + II SR + + +EL+ L+ SD+ VA++I LL A D + R Sbjct: 11 KFIESASSIIFSREKLESLIDELKLELVASDVAYEVAEEISSRLLK---AVDEGLVRSRE 67 Query: 87 DVSELIHKMLMP-LSKPFNWDF-----SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140 D+ ++ +L+ K + D +++P ++ +GVNGVGKTT I K++ + D G Sbjct: 68 DLQRVLKNILIEVFEKAGSVDLLSVARANKPCKLVFLGVNGVGKTTTIAKIAVLLRDNGF 127 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 K ++ A DTFR+ A +QLKI ++RT + GSD A++A++A + A ++ D L+ID Sbjct: 128 KPLMVAADTFRAGAQEQLKIHSERTGIPVFTGKYGSDPASVAFDAIQFASSRGFDALLID 187 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGR+H + L+ + K++RV+K PH + V+DA TG +A+ Q F+ G G Sbjct: 188 TAGRMHVDIDLVNELKKVVRVVK------PHFKILVVDALTGNDAIEQARFFNEAVGVDG 241 Query: 261 LIMTKMDGTARGGGLIPIVVTHKI--PVYFLGVGEGINDLEPF 301 +I+TK+D +GG +P+ + + + PV + GVG+G DL+PF Sbjct: 242 VIVTKVDAYEQGG--VPLSIAYILGKPVIYAGVGQGYKDLKPF 282 >gi|290957110|ref|YP_003488292.1| signal recognition particle receptor [Streptomyces scabiei 87.22] gi|260646636|emb|CBG69733.1| putative signal recognition particle receptor [Streptomyces scabiei 87.22] Length = 399 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 118/312 (37%), Positives = 183/312 (58%), Gaps = 7/312 (2%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 ++ + + + +L + + L +G+ ++S LDD EE+ED L+ +D+GV Q Sbjct: 90 EIPAPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDDDTWEEIEDTLLTADVGVQPTQ 149 Query: 65 KIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFS-HRPHVILVVGVNG 121 ++VE L + R + + + E + +L+P + N D P +++VVGVNG Sbjct: 150 ELVERLRERVRVLGTRTPAELRTLLREELLTILVPEFDRAVNTDSPLDTPGIVMVVGVNG 209 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT GKL++ + G V+L A DTFR+AA DQL+ W +R A V G D A++ Sbjct: 210 TGKTTTTGKLARVLVADGKNVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASI 269 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDAT 240 A++A K+ + DV++IDTAGRLH + LM +GK+ RV+++ HAP +L VLDAT Sbjct: 270 AFDAVKEGIEEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HAPLDEILLVLDAT 326 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQN L Q +F V TG+++TK+DGTA+GG +I + +PV +G+GEG +DL P Sbjct: 327 TGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADDLAP 386 Query: 301 FVAKDFSAVITG 312 F + F + G Sbjct: 387 FEPEAFVDALIG 398 >gi|229258574|gb|ACQ45592.1| cell division protein FtsY [Vesicomya sp. mt-II symbiont] Length = 194 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 73/159 (45%), Positives = 110/159 (69%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + VILVVGVNG GKTT+IGK++K + G VMLAAGDTFR+AA++QL++W R + Sbjct: 36 NETFVILVVGVNGAGKTTLIGKMAKSFQNQGKSVMLAAGDTFRAAAVEQLRVWGQRNNTP 95 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V G+DAA++ ++A++ AQAK +D+LI DTAGRLH + LM + K+ RV+ + + + Sbjct: 96 VVAQTTGTDAASVIFDAYQSAQAKNIDILIADTAGRLHTQNNLMQELAKIKRVIAKQNEN 155 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 APH + V+D +GQN + Q + F+ +G+ +TK+D Sbjct: 156 APHETMLVIDGGSGQNVINQAKEFNKAVTLSGISITKLD 194 >gi|256372275|ref|YP_003110099.1| signal recognition particle-docking protein FtsY [Acidimicrobium ferrooxidans DSM 10331] gi|256008859|gb|ACU54426.1| signal recognition particle-docking protein FtsY [Acidimicrobium ferrooxidans DSM 10331] Length = 367 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 92/196 (46%), Positives = 132/196 (67%), Gaps = 2/196 (1%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VILVVGVNG GKTT +GKL+ ++ + G V++AA DTFR+AA +Q+ +WA+R+ V Sbjct: 150 PTVILVVGVNGAGKTTTVGKLAARLRERG-DVVIAAADTFRAAATEQVAVWAERSGVRLV 208 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + G+D A+ ++A A+A+ V++ DTAGRL N + LMA +GK+ RV ++ H Sbjct: 209 AGQQGADPGAVVFDAVDAAKARGAAVVVCDTAGRLQNKANLMAELGKVRRVAEKAAGHV- 267 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 VL V+DATTGQN L Q +F V G TG+++TK+DG+A+GG + I K+PV +G Sbjct: 268 DEVLLVVDATTGQNGLSQARVFGEVTGLTGVVLTKLDGSAKGGIALAIEHEFKVPVKLVG 327 Query: 291 VGEGINDLEPFVAKDF 306 VGE + DL+PF DF Sbjct: 328 VGEALEDLQPFDPDDF 343 >gi|1217621|emb|CAA65233.1| signal recognition particle receptor [Acidianus ambivalens] Length = 374 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 95/261 (36%), Positives = 152/261 (58%), Gaps = 21/261 (8%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML----MPLSKPFNWDF- 107 L+ SD+ + V KI+E+L + K V+ D+ EL+ K L M + + ++ Sbjct: 112 LLESDVSLEVTDKILEDLKSSLIGKKVNRSE---DLDELVKKSLKNSIMEILEKNRFERN 168 Query: 108 -------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 S +P+VI+ GVNGVGKTT I K++ + AGLKV+++A DTFR+AA +QL I Sbjct: 169 LIEEIKRSPKPYVIMFFGVNGVGKTTTIAKVAYMLKKAGLKVIVSASDTFRAAAQEQLAI 228 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 + V + G D A++A++A + A+++ +DV++IDTAGR+H + L + +++R Sbjct: 229 HCQKLEIPLVKGKYGGDPASVAFDAIQAAKSRGIDVVLIDTAGRMHVDKDLTEELKRIVR 288 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 + K P+ L V+DA G +AL Q + F V G+I+TK+D A+GG ++ + Sbjct: 289 ISK------PNLKLLVIDALAGNDALEQAKYFENVVDYDGVILTKVDADAKGGVVLSLAY 342 Query: 281 THKIPVYFLGVGEGINDLEPF 301 K PV FLG G+ +DL PF Sbjct: 343 ELKKPVIFLGTGQNYDDLIPF 363 >gi|169630322|ref|YP_001703971.1| cell division protein FtsY-like protein [Mycobacterium abscessus ATCC 19977] gi|169242289|emb|CAM63317.1| Cell division protein FtsY homolog [Mycobacterium abscessus] Length = 458 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 107/271 (39%), Positives = 160/271 (59%), Gaps = 9/271 (3%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLMPLSKP 102 EE+ED L+ +D+G AV IV+ L ++ A+ V + +L +V LI ++ L + Sbjct: 192 EEVEDTLLIADLGTAVTASIVDRLRSEMAARSVRTEAQARALLREV--LIDELQPELDRS 249 Query: 103 FN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 + +P V+L+VGVNG GKTT +GKL++ + G +V+L A DTFR+AA DQL+ W Sbjct: 250 IKALPHNDKPSVLLIVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQAW 309 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 R A V G+D A++A++A + DV+++DTAGRLH + LM +GK+ RV Sbjct: 310 GQRVGAQVVRGAEGADPASVAFDAVDAGIREGADVVVVDTAGRLHTKTGLMDELGKIKRV 369 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 ++R VL VLD+T GQN L Q +F V TG+ +TK+DGTA+GG + + Sbjct: 370 VERR--ADVDEVLLVLDSTIGQNGLAQARVFADVVDITGVALTKLDGTAKGGIVFHVQRE 427 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +PV +G+GEG +DL PF F + G Sbjct: 428 LGVPVKLVGLGEGPDDLAPFEPPAFVDALLG 458 >gi|229258558|gb|ACQ45584.1| cell division protein FtsY [Ectenagena extenta gill symbiont] Length = 194 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 75/160 (46%), Positives = 110/160 (68%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 ++ VILVVGVNG GKTT+IGKL+K + G VMLAAGDTFR+AAI+QLKIW R + Sbjct: 35 TNETFVILVVGVNGAGKTTLIGKLAKYFQNQGKSVMLAAGDTFRAAAIEQLKIWGQRNNI 94 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V +G+D A++ ++A++ AQAK +D+L+ DTAGRLH LM + K+ RV+ + + Sbjct: 95 PVVAKTLGADTASVIFDAYQSAQAKNIDILLADTAGRLHTQKNLMQELSKIKRVITKQNI 154 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 +APH + V+D +GQN + Q + F+ +G+ +TK+D Sbjct: 155 NAPHETMLVIDGGSGQNIINQAKEFNKAVNLSGISITKLD 194 >gi|88855272|ref|ZP_01129937.1| signal recognition particle receptor [marine actinobacterium PHSC20C1] gi|88815800|gb|EAR25657.1| signal recognition particle receptor [marine actinobacterium PHSC20C1] Length = 289 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 114/289 (39%), Positives = 165/289 (57%), Gaps = 12/289 (4%) Query: 23 STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK--RYAKD-- 78 + S L + + + +D +LED +I +D G + +++EL R+ D Sbjct: 2 AASWSLSGALKSMFARDTIDAETWSDLEDAMISADFGPDITDSVIDELRASVTRFKTDDP 61 Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138 ++R+L + E L P S RP V+LVVGVNGVGKTT IGK +K + Sbjct: 62 ADLKRMLRETLEERLARLDP-----TLTLSARPAVVLVVGVNGVGKTTTIGKFAKFLVGH 116 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVL 197 G V++ A DTFR+AA++QL WA+R A V + G D A++A++ ++AQ +D+ Sbjct: 117 GRTVVVGAADTFRAAAVEQLATWAERGGASIVRPQQQGQDPASVAFQTVERAQRDSIDIA 176 Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257 IIDTAGRL S LM +GK+ RV+++ A VL VLDATTGQN + Q E F AG Sbjct: 177 IIDTAGRLQTKSGLMDELGKIRRVVEKQTEIA--EVLLVLDATTGQNGVAQAEAFIQHAG 234 Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TGL++TK+DG+A+ G ++ + IP+ +G GEGINDL F F Sbjct: 235 VTGLVITKLDGSAKAGFVLAVQERTGIPIKLVGQGEGINDLTGFTPHVF 283 >gi|91772186|ref|YP_564878.1| signal recognition particle-docking protein FtsY [Methanococcoides burtonii DSM 6242] gi|91711201|gb|ABE51128.1| signal recognition docking protein FtsY [Methanococcoides burtonii DSM 6242] Length = 366 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 108/322 (33%), Positives = 171/322 (53%), Gaps = 31/322 (9%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITD-----------IISSRRLDDGVREEL 49 +S +V+ S+ +L K AS SLK K G I+ ++D + E L Sbjct: 44 VSTPEVSENVSSFEDQLDKTEASPSLKQKIGFAQKAKALVFEREVILDGSDIEDSLWE-L 102 Query: 50 EDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL------SKPF 103 E L+ SDI + VA+ IVE + + S +++ + EL+ L + F Sbjct: 103 EMALLESDIAINVAEAIVESVKEELVG---SRKKLGKNTGELVENALRSAIYKVMSANVF 159 Query: 104 NWDF----SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 + D + +P I+ +G+NG GKTT I K++K++ D V++AAGDTFR+ AIDQ+ Sbjct: 160 DLDDYIRDAEKPVHIVFIGINGTGKTTTISKMAKRLKDMKYSVVIAAGDTFRAGAIDQIA 219 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 I A+R + + G D AA+ Y+A + A+A VDV++ DTAGR+H N LMA + K+ Sbjct: 220 IHAERIGVKLIKHQEGGDPAAVVYDAVQHAKAHNVDVVLSDTAGRMHTNVNLMAQLEKVC 279 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 RV +P ++ V +A G +A+ + + F+ G I+TK D ++GG I I Sbjct: 280 RV------SSPDLIIFVDEAVAGNDAVERAQQFNTAVPIHGSILTKTDADSKGGAAISIA 333 Query: 280 VTHKIPVYFLGVGEGINDLEPF 301 P+ FLG+G+G +DL+ F Sbjct: 334 YITGKPILFLGMGQGYDDLKKF 355 >gi|332796973|ref|YP_004458473.1| signal recognition particle-docking protein FtsY [Acidianus hospitalis W1] gi|332694708|gb|AEE94175.1| signal recognition particle-docking protein FtsY [Acidianus hospitalis W1] Length = 308 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 97/261 (37%), Positives = 151/261 (57%), Gaps = 21/261 (8%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-----LSK-PFNWD 106 L+ SD+ + V KI+E+L + K V+ D+ EL+ K L L K F + Sbjct: 46 LLESDVSLEVTDKILEDLKSSLIGKKVNRSE---DLDELVKKSLKNSITEILEKNKFERN 102 Query: 107 F------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 S +P+VI+ GVNGVGKTT I K++ + AGLKV+++A DTFR+AA +QL I Sbjct: 103 LIDEIKKSPKPYVIMFFGVNGVGKTTTIAKVAYMLKKAGLKVIVSASDTFRAAAQEQLAI 162 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 + V + G D A++A++A + A+++ +DV++IDTAGR+H + L + +++R Sbjct: 163 HCQKLEIPLVKGKYGGDPASVAFDAIQAAKSRGIDVVLIDTAGRMHVDKDLTEELKRIVR 222 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 + K P+ L V+DA G +AL Q + F V G+I+TK+D A+GG ++ + Sbjct: 223 ISK------PNLKLLVIDALAGNDALEQAKYFENVVDYDGVILTKVDADAKGGVVLSLAY 276 Query: 281 THKIPVYFLGVGEGINDLEPF 301 K PV FLG G+ +DL PF Sbjct: 277 ELKKPVIFLGTGQNYDDLIPF 297 >gi|332670008|ref|YP_004453016.1| signal recognition particle-docking protein FtsY [Cellulomonas fimi ATCC 484] gi|332339046|gb|AEE45629.1| signal recognition particle-docking protein FtsY [Cellulomonas fimi ATCC 484] Length = 406 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 120/281 (42%), Positives = 172/281 (61%), Gaps = 22/281 (7%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYD-----VSELIHKML- 96 +ELE+ L+ +D+G +IV+ L T+ + + V+ VL D V + + L Sbjct: 133 DELEETLLLADVGAGPTTEIVDALRTRVRVEGLREPGQVRAVLRDQLLAIVDPSLDRTLG 192 Query: 97 -MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 P + P D + P V+LVVGVNG GKTT +GKL++ + G V+L A DTFR+AA Sbjct: 193 TAPTTTP---DGATVPAVVLVVGVNGTGKTTTVGKLARVLVAEGRSVVLGAADTFRAAAA 249 Query: 156 DQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 DQL+ W R V S+ G+D A++A++A + +A+ VDV+++DTAGRL N + LM Sbjct: 250 DQLETWGSRVGVRTVRSDRDGADPASVAFDAVRTGRAEGVDVVLVDTAGRLQNKAGLMDE 309 Query: 215 IGKMIRVLKRLDPHAPHS-VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 +GK+ RVL R AP S VL VLDATTGQN L Q +F VAG TG+++TK+DGTA+GG Sbjct: 310 LGKITRVLTR---EAPLSEVLLVLDATTGQNGLNQARVFAEVAGVTGIVLTKLDGTAKGG 366 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 ++ + +PV +G+GEG +DL PF D A + G L Sbjct: 367 IVVAVQRELGVPVKLVGLGEGPDDLAPF---DPEAFVDGIL 404 >gi|320532001|ref|ZP_08032894.1| signal recognition particle-docking protein FtsY [Actinomyces sp. oral taxon 171 str. F0337] gi|320135765|gb|EFW27820.1| signal recognition particle-docking protein FtsY [Actinomyces sp. oral taxon 171 str. F0337] Length = 390 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 109/277 (39%), Positives = 166/277 (59%), Gaps = 13/277 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFN 104 EE+ED L+ SD+G+ V +++EL T+ S + V +EL+ + L + N Sbjct: 116 EEIEDTLLTSDLGIEVTTSLMDELRTQAKVLGTSDPEAVRTVLRAELLKLVDPSLDRSLN 175 Query: 105 WDFSHRPHV--------ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 R IL+VGVNG GKTT GKL++ + V+L A DTFR+AA + Sbjct: 176 LKRPTRAEGAQAAPAAAILMVGVNGTGKTTTCGKLARVLVAQDKTVVLGAADTFRAAAAE 235 Query: 157 QLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 QL W +R D V SE G+D A++AY+A ++A ++ DV+++DTAGRL N + LM + Sbjct: 236 QLSTWGERVGVDVVRSEKEGADPASVAYDAARRAADQEADVVVVDTAGRLQNKAGLMDEL 295 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 GK+ RV++++ P +L VLDATTGQN +RQ ++F G TG+++TK+DGTA+GG + Sbjct: 296 GKIKRVMEKIAPVG--EILLVLDATTGQNGMRQAQVFSEAVGITGIVLTKLDGTAKGGIV 353 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + + +PV +G+GEG +DL PF + F + G Sbjct: 354 VTVQRELGVPVKLVGLGEGADDLAPFDPEGFVDALLG 390 >gi|254526943|ref|ZP_05138995.1| signal recognition particle docking protein FtsY [Prochlorococcus marinus str. MIT 9202] gi|221538367|gb|EEE40820.1| signal recognition particle docking protein FtsY [Prochlorococcus marinus str. MIT 9202] Length = 419 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 103/307 (33%), Positives = 177/307 (57%), Gaps = 5/307 (1%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +++ + + W+ KL +G T + D + L ++LE LLIR+D+G+ Sbjct: 105 QISIDEIDWLTKLRRGLEETRKGFVTELLDKLGDDPLTPESLDDLETLLIRADVGIDSTD 164 Query: 65 KIVEELLTKRYAK----DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 K++ L TK + + ++ + ++ +I K ++ + +V L+VGVN Sbjct: 165 KVINSLRTKLNEEVVGGEAGIKFLKQELKLIIDKPIINSGTELLVPQKGKLNVWLLVGVN 224 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAA 179 GVGKTT +GKL+ S + ++AA DTFR+AA++QLK+W +R++ D + ++ +D A Sbjct: 225 GVGKTTTLGKLAYLSSKSNYTTLIAAADTFRAAAVEQLKVWGERSNVDVISNQSKNADPA 284 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ ++A A+ + D+L++DTAGRL + LM + K+ +++ + P A L VLDA Sbjct: 285 AVVFDAINSAKKRNADLLLVDTAGRLQTKNNLMDELAKIKKIIDKKVPDAIVESLLVLDA 344 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 + GQN L+Q + F A +G I+TK+DGT+RGG + + +P+ F+G GEGI DL Sbjct: 345 SQGQNGLKQAKSFAKSADLSGAIITKLDGTSRGGVSLAVSEEVNLPIRFIGAGEGIQDLR 404 Query: 300 PFVAKDF 306 PF + +F Sbjct: 405 PFNSYEF 411 >gi|50955122|ref|YP_062410.1| signal recognition particle receptor [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951604|gb|AAT89305.1| signal recognition particle receptor [Leifsonia xyli subsp. xyli str. CTCB07] Length = 291 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 110/295 (37%), Positives = 173/295 (58%), Gaps = 14/295 (4%) Query: 24 TSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDV 79 T L + + + + +D+ ++LE LI +D G V + ++++L K R Sbjct: 5 TPWSLSGALRGMFAKKTIDETTWDDLETALITADFGPDVTEAVIDDLRVKVGRYRTTDPA 64 Query: 80 SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138 +QR+L + + E + ++ L S RP V+LVVGVNGVGKTT IGK +K + Sbjct: 65 DLQRMLRETMGERLSRLDTTLK------LSDRPAVVLVVGVNGVGKTTTIGKFAKFLRSY 118 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVL 197 V++ A DTFR+AA++QL WA+R+ A V + G D A++A++ ++A++ +++ Sbjct: 119 DRSVVVGAADTFRAAAVEQLATWAERSGAGIVRPQQQGQDPASVAFQTVEKAKSDGTEIV 178 Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257 +IDTAGRL LM + K+ RV+++ P A VL VLDATTGQN L Q + F AG Sbjct: 179 LIDTAGRLQTKGGLMDELSKIKRVVEKQAPIA--EVLLVLDATTGQNGLAQAQAFLEHAG 236 Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 TGL++TK+DG+A+GG ++ + IP+ +G GEGI+DL F F+ + G Sbjct: 237 VTGLVLTKLDGSAKGGFVLAVQERTGIPIKLVGQGEGIDDLTGFTPHVFAQQLVG 291 >gi|239928696|ref|ZP_04685649.1| docking protein [Streptomyces ghanaensis ATCC 14672] Length = 400 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 116/303 (38%), Positives = 175/303 (57%), Gaps = 11/303 (3%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L + + L +G+ ++S LD+ EE+ED L+ +D+GV Q++VE L R Sbjct: 102 RLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVQPTQELVERL---RE 158 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKTTVIG 129 V R ++ L+ + L+ L P + + P +++VVGVNG GKTT G Sbjct: 159 RVKVLGTRTPEELRGLLRQELITLVGPEMDRTVHTENAAGGPGIVMVVGVNGTGKTTTTG 218 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL++ + G V+L A DTFR+AA DQL+ W +R A V G D A++A++A K+ Sbjct: 219 KLARVLVADGNTVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEGGDPASVAFDAVKEG 278 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + D ++IDTAGRLH + LM +GK+ RV+++ P VL VLDATTGQN L Q Sbjct: 279 KEMAADAVLIDTAGRLHTKTGLMDELGKVKRVVEKQAPL--DEVLLVLDATTGQNGLVQA 336 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 +F V TG+++TK+DGTA+GG +I + +PV +G+GEG +DL PF + F Sbjct: 337 RVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADDLAPFEPEAFVDA 396 Query: 310 ITG 312 + G Sbjct: 397 LLG 399 >gi|157412348|ref|YP_001483214.1| signal recognition particle docking protein FtsY [Prochlorococcus marinus str. MIT 9215] gi|157386923|gb|ABV49628.1| signal recognition particle docking protein FtsY [Prochlorococcus marinus str. MIT 9215] Length = 409 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 105/310 (33%), Positives = 177/310 (57%), Gaps = 11/310 (3%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +++ + + W+ KL +G T + D + L ++LE LLIR+D+G+ Sbjct: 95 QISIDEIDWLTKLRRGLEETRKGFVTELLDKLGDDPLTPESLDDLETLLIRADVGIDSTD 154 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-------RPHVILVV 117 K++ L TK + V + + L ++ + + KP + + +V L+V Sbjct: 155 KVINSLRTKLNEEVVGAE---AGIKFLKKELKLIIDKPIKNSGTELLVPQKGKLNVWLLV 211 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GS 176 GVNGVGKTT +GKL+ S + ++AA DTFR+AA++QLK+W +R++ D + ++ + Sbjct: 212 GVNGVGKTTTLGKLAFLSSKSNYTTLIAAADTFRAAAVEQLKVWGERSNVDVISNQSKNA 271 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D AA+ ++A A+ + D+L++DTAGRL + LM + K+ +++ + P A L V Sbjct: 272 DPAAVVFDAINSAKKRNADLLLVDTAGRLQTKNNLMDELAKIKKIIDKKVPDAIVESLLV 331 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDA+ GQN L+Q + F A +G I+TK+DGT+RGG + + +P+ F+G GEGI Sbjct: 332 LDASQGQNGLKQAKSFAKSADLSGAIITKLDGTSRGGVSLAVSEEVNLPIRFIGAGEGIK 391 Query: 297 DLEPFVAKDF 306 DL PF + +F Sbjct: 392 DLRPFNSYEF 401 >gi|283458195|ref|YP_003362812.1| signal recognition particle GTPase [Rothia mucilaginosa DY-18] gi|283134227|dbj|BAI64992.1| signal recognition particle GTPase [Rothia mucilaginosa DY-18] Length = 373 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 107/307 (34%), Positives = 176/307 (57%), Gaps = 15/307 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L A ++ L +G+ ++S R+D V +E+E+ L+ +D+G ++VE L + Sbjct: 75 RLRARLARSNNMLGKGLLALLSRDRIDQDVWDEVEETLLLADLGSEPTTRLVEALQQRVR 134 Query: 76 AKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG-KTTVIGK 130 + S V+++L + EL+ + + + S +++V KTT +GK Sbjct: 135 VEGTSNPAAVKKMLRE--ELVKIVRPDMDRELKTAGSDGNPGVVLVVGVNGVGKTTTVGK 192 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQA 189 +++ M G ++L A DTFR+AA +QL W DR V SE G+D A++A++A K Sbjct: 193 IARVMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKTVRSEKEGADPASVAFDAVKAG 252 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQ 248 + + VD +++DTAGRL N S LM +GK+ RV+++ AP VL V+DATTGQN + Q Sbjct: 253 KEQGVDTVLVDTAGRLQNKSGLMDQLGKIKRVIEK---EAPVTEVLLVIDATTGQNGMVQ 309 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 ++F + TG+++TK+DGTA+GG ++ I +PV +G+GEG +DL PF D A Sbjct: 310 AKVFGDIVDVTGIVLTKLDGTAKGGIVVAIQEELGVPVKLIGLGEGPDDLAPF---DPEA 366 Query: 309 VITGCLD 315 + LD Sbjct: 367 FVDALLD 373 >gi|229258556|gb|ACQ45583.1| cell division protein FtsY [Vesicomya gigas gill symbiont] Length = 194 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 74/159 (46%), Positives = 109/159 (68%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + VILVVGVNG GKTT+IGKL+K + G VMLAAGDTFR+AAI+QLKIW R + Sbjct: 36 NETFVILVVGVNGAGKTTLIGKLAKSFQNQGKSVMLAAGDTFRAAAIEQLKIWGQRNNIP 95 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + +G+D A++ ++A++ AQAK +D+L+ DTAGRLH LM + K+ RV+ + + + Sbjct: 96 VIAKTLGADTASVIFDAYQSAQAKNIDILLADTAGRLHTQDNLMQELTKIKRVITKQNIN 155 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 APH + V+D +GQN + Q + F+ +G+ +TK+D Sbjct: 156 APHETMLVIDGGSGQNVINQAKEFNKAVNLSGISITKLD 194 >gi|111225154|ref|YP_715948.1| cell division protein FtsY [Frankia alni ACN14a] gi|111152686|emb|CAJ64427.1| Cell division protein FtsY [Frankia alni ACN14a] Length = 422 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 106/269 (39%), Positives = 153/269 (56%), Gaps = 6/269 (2%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELL--TKRYAKDVSVQRVLYDVSELIHKMLMP 98 LD+ E++E L+ +D+GV ++V L TK Q EL+ ++ Sbjct: 148 LDEETWEDVEATLLLADVGVVATGELVAALRERTKVLGASTPAQARAMLRDELLAQVGTA 207 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 + RP V+LVVGVNG GKTT GK+++ + G V+L A DTFR+AA DQL Sbjct: 208 TDRSLRTSVPDRPAVVLVVGVNGTGKTTTCGKVARLLVAEGRTVVLGAADTFRAAAADQL 267 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 + W +R A V G D A++A++A K+ D ++IDTAGRLH + LM + K+ Sbjct: 268 QTWGERVGAVTVRGAEGGDPASVAFDAVKRGIDSAADTVLIDTAGRLHTKTGLMDELAKI 327 Query: 219 IRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 RV+ + H P VL VLDATTGQNAL Q +F +G+++TK+DGTA+GG +I Sbjct: 328 KRVVGK---HGPVDEVLLVLDATTGQNALVQARVFTEAVELSGVVLTKLDGTAKGGIVIA 384 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + +PV +G+GEG +DL PF + F Sbjct: 385 VQRELGVPVKLIGLGEGPDDLAPFEPEAF 413 >gi|290559218|gb|EFD92569.1| signal recognition particle receptor [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 386 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 106/293 (36%), Positives = 158/293 (53%), Gaps = 36/293 (12%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTK------------RYAKDV---SVQRVL-- 85 D + E++ +L+ +++ ++V + I ++L K +Y +V S+ L Sbjct: 108 DMIYSEIKTVLLENNVALSVLENIQKDLKNKLVGESVSMFGNKKYLNNVIRDSIANTLIG 167 Query: 86 YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 YD E I K+ S +P VILV+GVNG GKTT I KL K GLK ++A Sbjct: 168 YDKEEFISKIK-----------SKKPFVILVIGVNGAGKTTTIAKLCKLFLSKGLKPVIA 216 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 AGDTFR+A+I+QL+I A + + GSD AA+A++A K A + K DV++IDTAGR Sbjct: 217 AGDTFRAASIEQLEIHAKKLKVPIIKHTYGSDPAAVAFDAIKHANSAKEDVVVIDTAGRS 276 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 N L+ + K+ RV K P + + DA TG + ++Q E++ G I++K Sbjct: 277 DINKNLIEELKKVKRVSK------PDMTIFIGDALTGNDVVKQAEVYDKEIGIDANILSK 330 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP--FVAKDFSAVITGCLDY 316 D +GG ++ I K P+ FLGVG+G +DL P F A FSA + C Y Sbjct: 331 ADVDKKGGAVLSISYITKKPILFLGVGQGSDDLIPVSFSAIAFSAPMILCHSY 383 >gi|291437021|ref|ZP_06576411.1| prokaryotic docking protein [Streptomyces ghanaensis ATCC 14672] gi|291339916|gb|EFE66872.1| prokaryotic docking protein [Streptomyces ghanaensis ATCC 14672] Length = 409 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 116/303 (38%), Positives = 175/303 (57%), Gaps = 11/303 (3%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L + + L +G+ ++S LD+ EE+ED L+ +D+GV Q++VE L R Sbjct: 111 RLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVQPTQELVERL---RE 167 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKTTVIG 129 V R ++ L+ + L+ L P + + P +++VVGVNG GKTT G Sbjct: 168 RVKVLGTRTPEELRGLLRQELITLVGPEMDRTVHTENAAGGPGIVMVVGVNGTGKTTTTG 227 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL++ + G V+L A DTFR+AA DQL+ W +R A V G D A++A++A K+ Sbjct: 228 KLARVLVADGNTVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEGGDPASVAFDAVKEG 287 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + D ++IDTAGRLH + LM +GK+ RV+++ P VL VLDATTGQN L Q Sbjct: 288 KEMAADAVLIDTAGRLHTKTGLMDELGKVKRVVEKQAPL--DEVLLVLDATTGQNGLVQA 345 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 +F V TG+++TK+DGTA+GG +I + +PV +G+GEG +DL PF + F Sbjct: 346 RVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADDLAPFEPEAFVDA 405 Query: 310 ITG 312 + G Sbjct: 406 LLG 408 >gi|126465987|ref|YP_001041096.1| signal recognition particle-docking protein FtsY [Staphylothermus marinus F1] gi|126014810|gb|ABN70188.1| signal recognition particle-docking protein FtsY [Staphylothermus marinus F1] Length = 295 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 98/294 (33%), Positives = 159/294 (54%), Gaps = 31/294 (10%) Query: 22 ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 AS L KE + D+I + + LI +D+ VA++I +L+ + Sbjct: 16 ASALLFSKEQLMDLIDEFKFE----------LISNDVAYDVAEEITTKLV------EAVE 59 Query: 82 QRVLYDVSELIHKMLMPLSKPFN----WDFSH-----RPHVILVVGVNGVGKTTVIGKLS 132 +++ D LI + + F+ D H +P++I+ +GVNGVGKTT I K + Sbjct: 60 NKIVRDKESLIEFLKKTIRSYFDSVELIDIFHEASKTKPYIIVFLGVNGVGKTTTIAKTA 119 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 D G K ++ A DTFR+ A +QL+I +RT + G+D A++A++A + A+ + Sbjct: 120 VLFRDKGFKPLMVAADTFRAGAQEQLRIHGERTGIPVFMGKYGADPASIAFDAIRHAETR 179 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 DV++IDTAGR+H +S L+ + K+IRV K PH + V+DA TG +A+ Q F Sbjct: 180 GYDVVLIDTAGRMHTDSNLVDELRKIIRVAK------PHRKILVVDALTGNDAIEQAVFF 233 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G +I+TK+D +GG + IV + + P+ +GVG+G DL+PF +F Sbjct: 234 DKAVGVDAVIVTKVDAYEQGGVPLSIVYSIRKPIIMIGVGQGYKDLKPFNIDEF 287 >gi|255327564|ref|ZP_05368631.1| signal recognition particle-docking protein FtsY [Rothia mucilaginosa ATCC 25296] gi|255295458|gb|EET74808.1| signal recognition particle-docking protein FtsY [Rothia mucilaginosa ATCC 25296] Length = 369 Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 107/307 (34%), Positives = 176/307 (57%), Gaps = 15/307 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L A ++ L +G+ ++S R+D V +E+E+ L+ +D+G ++VE L + Sbjct: 71 RLRARLARSNNMLGKGLLALLSRDRIDQDVWDEVEETLLLADLGSEPTTRLVEALQQRVR 130 Query: 76 AKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG-KTTVIGK 130 + S V+++L + EL+ + + + S +++V KTT +GK Sbjct: 131 VEGTSNPAAVKKMLRE--ELVKIVRPDMDRELKTAGSDGNPGVVLVVGVNGVGKTTTVGK 188 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQA 189 +++ M G ++L A DTFR+AA +QL W DR V SE G+D A++A++A K Sbjct: 189 IARVMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKTVRSEKEGADPASVAFDAVKAG 248 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQ 248 + + VD +++DTAGRL N S LM +GK+ RV+++ AP VL V+DATTGQN + Q Sbjct: 249 KEQGVDTVLVDTAGRLQNKSGLMDQLGKIKRVIEK---EAPVTEVLLVIDATTGQNGMVQ 305 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 ++F + TG+++TK+DGTA+GG ++ I +PV +G+GEG +DL PF D A Sbjct: 306 AKVFGDIVDVTGIVLTKLDGTAKGGIVVAIQEELGVPVKLIGLGEGPDDLAPF---DPEA 362 Query: 309 VITGCLD 315 + LD Sbjct: 363 FVDALLD 369 >gi|16950583|gb|AAL32277.1| signal recognition particle receptor [Arcanobacterium pyogenes] Length = 397 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 119/298 (39%), Positives = 176/298 (59%), Gaps = 14/298 (4%) Query: 19 KGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78 +G + S L + I+S L + EELED L+ +D+G+ ++++ L T+ K Sbjct: 98 RGRLAASGALGRTLLSILSRGDLSEADWEELEDTLLMADVGLDATTELMDILRTQTKVKA 157 Query: 79 VS----VQRVLYDVSELIHKMLMPLSKPFNW-----DFSHRPHVILVVGVNGVGKTTVIG 129 + V+ +L ELI + + N D S P +L+VGVNG GKTT G Sbjct: 158 TTDAGEVRAILR--QELIKLVGADTDRSLNLEPVIDDDSRHPAALLIVGVNGTGKTTTTG 215 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQ 188 KL++ + G +++L A DTFR+AA DQL W R D V S+ G+D A++A+EA + Sbjct: 216 KLARLLVADGKRLVLGAADTFRAAAADQLSTWGARVGVDVVRSDREGADPASVAFEAVRV 275 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ DV+I+DTAGRL N + LM +GK+ RV+++ P VL VLDATTGQN + Q Sbjct: 276 ARESAADVVIVDTAGRLQNKAGLMDELGKIKRVMEKSAPL--REVLLVLDATTGQNGMSQ 333 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++F VAG TG+++TK+DGTA+GG +I + +PV +G+GEG +DL PF DF Sbjct: 334 AKVFAEVAGITGIVLTKLDGTAKGGIVISVQRELGVPVKLVGLGEGADDLAPFDPTDF 391 >gi|318056554|ref|ZP_07975277.1| signal recognition particle-docking protein FtsY [Streptomyces sp. SA3_actG] gi|318080907|ref|ZP_07988239.1| signal recognition particle-docking protein FtsY [Streptomyces sp. SA3_actF] Length = 407 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 118/322 (36%), Positives = 178/322 (55%), Gaps = 27/322 (8%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V + + +L + + L +G+ ++S LD+ EE+ED L+ +D+GVA Q Sbjct: 98 EVPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVAPTQ 157 Query: 65 KIVEELLTK-------------RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111 ++VE L + ++ + V D +H P +P Sbjct: 158 ELVERLRERVRVLGTRTTDELRTLLREELLTLVGADTDRTVHTEAAP----------DKP 207 Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 +++VVGVNG GKTT GKL++ + G V+L A DTFR+AA DQL+ W +R A V Sbjct: 208 GIVMVVGVNGTGKTTTTGKLARVLVADGKSVVLGAADTFRAAAADQLQTWGERVGARTVR 267 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP- 230 G D A++A++A K+ A+K D ++IDTAGRLH + LM +GK+ RV+++ AP Sbjct: 268 GPEGGDPASIAFDAVKEGIAEKADAVLIDTAGRLHTKTGLMDELGKVKRVVEK---QAPV 324 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 VL VLDATTGQN L Q +F V TG+++TK+DGTA+GG +I + +PV +G Sbjct: 325 DEVLLVLDATTGQNGLVQARVFAEVVSITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIG 384 Query: 291 VGEGINDLEPFVAKDFSAVITG 312 +GEG +DL PF F + G Sbjct: 385 LGEGADDLAPFEPGAFVDALIG 406 >gi|296394653|ref|YP_003659537.1| signal recognition particle-docking protein FtsY [Segniliparus rotundus DSM 44985] gi|296181800|gb|ADG98706.1| signal recognition particle-docking protein FtsY [Segniliparus rotundus DSM 44985] Length = 425 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 103/260 (39%), Positives = 157/260 (60%), Gaps = 9/260 (3%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKP 102 E++E L+ +D+G + + ++++L +V + VL +V LI ++ L + Sbjct: 159 EDIETTLLAADLGASTTEHVIDKLRAALARAEVRSEAQARAVLKEV--LIGELKPELDRS 216 Query: 103 FN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 + RP V+LVVGVNG GKTT GKL++ + G +V+L A DTFR+AA+DQL+ W Sbjct: 217 VRALPHAERPSVVLVVGVNGTGKTTTTGKLARVLIADGRRVLLGAADTFRAAAVDQLQTW 276 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 R A+ V G+D A++A+EA ++ DV++IDTAGRLH + LM +GK+ RV Sbjct: 277 GRRVGAEVVTGAEGADPASVAFEAVRRGVETGADVVLIDTAGRLHTKTGLMDELGKIKRV 336 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 ++R A V+ VLDAT GQN L Q ++F V T + +TK+DGTA+GG + + Sbjct: 337 VER--KAAVDEVVLVLDATIGQNGLHQAKVFSEVVDVTAVALTKLDGTAKGGIVFAVQQE 394 Query: 282 HKIPVYFLGVGEGINDLEPF 301 +PV +G+GEG +DL PF Sbjct: 395 LGVPVKLVGLGEGKDDLAPF 414 >gi|311113793|ref|YP_003985015.1| cell division protein FtsY [Rothia dentocariosa ATCC 17931] gi|310945287|gb|ADP41581.1| cell division protein FtsY [Rothia dentocariosa ATCC 17931] Length = 367 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 113/314 (35%), Positives = 183/314 (58%), Gaps = 16/314 (5%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 S + S + +L A ++ L +G+ ++S R+D V +E+E+ L+ +D+G Sbjct: 55 SRYDIPDPSAGRLVRLRARLARSNNMLGKGLLALLSRDRIDQDVWDEVEETLLMADLGAE 114 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VI 114 ++VE L + + V +++H+ L+ + P D + V+ Sbjct: 115 PTTRLVEALQKRVRVEGTDNPAA---VKKMLHEELLEIIGP-TMDRELKTEGTDGNPGVV 170 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 LVVGVNGVGKTT +GK+++ M G ++L A DTFR+AA +QL W DR V SE Sbjct: 171 LVVGVNGVGKTTTVGKIARVMVADGNSLLLGAADTFRAAASEQLTTWGDRVGVKTVRSEK 230 Query: 175 -GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HS 232 G+D A++A++A K A+A+ + +++DTAGRL N + LM +GK+ RV+++ AP Sbjct: 231 EGADPASVAFDAVKTAKAEGIGTVLVDTAGRLQNKAGLMDQLGKIKRVIEK---EAPVTE 287 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 VL V+DATTGQN + Q ++F + TG+++TK+DGTA+GG ++ I +PV +G+G Sbjct: 288 VLLVIDATTGQNGMVQAKVFGEIVDVTGIVLTKLDGTAKGGIVVAIQEELGVPVKLVGLG 347 Query: 293 EGINDLEPFVAKDF 306 EG +DL PF + F Sbjct: 348 EGPDDLAPFDPEGF 361 >gi|300741690|ref|ZP_07071711.1| signal recognition particle-docking protein FtsY [Rothia dentocariosa M567] gi|300380875|gb|EFJ77437.1| signal recognition particle-docking protein FtsY [Rothia dentocariosa M567] Length = 371 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 113/314 (35%), Positives = 183/314 (58%), Gaps = 16/314 (5%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 S + S + +L A ++ L +G+ ++S R+D V +E+E+ L+ +D+G Sbjct: 59 SRYDIPDPSAGRLVRLRARLARSNNMLGKGLLALLSRDRIDQDVWDEVEETLLMADLGAE 118 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VI 114 ++VE L + + V +++H+ L+ + P D + V+ Sbjct: 119 PTTRLVEALQKRVRVEGTDNPAA---VKKMLHEELLEIIGP-TMDRELKTEGTDGNPGVV 174 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 LVVGVNGVGKTT +GK+++ M G ++L A DTFR+AA +QL W DR V SE Sbjct: 175 LVVGVNGVGKTTTVGKIARVMVADGNSLLLGAADTFRAAASEQLTTWGDRVGVKTVRSEK 234 Query: 175 -GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HS 232 G+D A++A++A K A+A+ + +++DTAGRL N + LM +GK+ RV+++ AP Sbjct: 235 EGADPASVAFDAVKTAKAEGIGTVLVDTAGRLQNKAGLMDQLGKIKRVIEK---EAPVTE 291 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 VL V+DATTGQN + Q ++F + TG+++TK+DGTA+GG ++ I +PV +G+G Sbjct: 292 VLLVIDATTGQNGMVQAKVFGEIVDVTGIVLTKLDGTAKGGIVVAIQEELGVPVKLVGLG 351 Query: 293 EGINDLEPFVAKDF 306 EG +DL PF + F Sbjct: 352 EGPDDLAPFDPEGF 365 >gi|333024184|ref|ZP_08452248.1| putative signal recognition particle FtsY [Streptomyces sp. Tu6071] gi|332744036|gb|EGJ74477.1| putative signal recognition particle FtsY [Streptomyces sp. Tu6071] Length = 407 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 118/322 (36%), Positives = 178/322 (55%), Gaps = 27/322 (8%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V + + +L + + L +G+ ++S LD+ EE+ED L+ +D+GVA Q Sbjct: 98 EVPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVAPTQ 157 Query: 65 KIVEELLTK-------------RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111 ++VE L + ++ + V D +H P +P Sbjct: 158 ELVERLRERVRVLGTRTTDELRTLLREELLTLVGADTDRTVHTEAAP----------DKP 207 Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 +++VVGVNG GKTT GKL++ + G V+L A DTFR+AA DQL+ W +R A V Sbjct: 208 GIVMVVGVNGTGKTTTTGKLARVLVADGKSVVLGAADTFRAAAADQLQTWGERVGARTVR 267 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP- 230 G D A++A++A K+ A+K D ++IDTAGRLH + LM +GK+ RV+++ AP Sbjct: 268 GPEGGDPASIAFDAVKEGIAEKADAVLIDTAGRLHTKTGLMDELGKVKRVVEK---QAPV 324 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 VL VLDATTGQN L Q +F V TG+++TK+DGTA+GG +I + +PV +G Sbjct: 325 DEVLLVLDATTGQNGLVQARVFAEVVSITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIG 384 Query: 291 VGEGINDLEPFVAKDFSAVITG 312 +GEG +DL PF F + G Sbjct: 385 LGEGADDLAPFEPGAFVDALIG 406 >gi|296171447|ref|ZP_06852733.1| cell division protein FtsY [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894133|gb|EFG73893.1| cell division protein FtsY [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 434 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 113/306 (36%), Positives = 169/306 (55%), Gaps = 13/306 (4%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 + +L A + + + +I LD+ +++ED L+ +D+G V + ++ +L + Sbjct: 135 LERLRGRLARSQNAIGRSVLGLIGGGDLDEDAWQDVEDTLLVADLGPVVTESVMSQLRGR 194 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-------PHVILVVGVNGVGKTT 126 V R D ++ +L+ P + D S R P V+LVVGVNG GKTT Sbjct: 195 LAGGAV---RTEADAKAILRDVLIRELHP-DMDRSIRALPHDDHPSVLLVVGVNGTGKTT 250 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 +GKL++ + G +V+L A DTFR+AA DQL+ WA R A+ V G+D A++A++A Sbjct: 251 TVGKLARVLVADGRRVVLGAADTFRAAAADQLQTWASRVGAEVVRGAEGADPASVAFDAV 310 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A DV++IDTAGRLH LM + K+ RV+ R A VL VLDAT GQN L Sbjct: 311 DKGIASGADVVLIDTAGRLHTKVGLMDELDKVKRVVTRR--AAVDEVLLVLDATIGQNGL 368 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q +F V TG ++TK+DGTA+GG + + +PV +G+GEG +DL PF F Sbjct: 369 AQARVFAEVVEITGAVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPAAF 428 Query: 307 SAVITG 312 + G Sbjct: 429 VDALLG 434 >gi|29829196|ref|NP_823830.1| signal recognition particle [Streptomyces avermitilis MA-4680] gi|29606302|dbj|BAC70365.1| putative signal recognition particle receptor [Streptomyces avermitilis MA-4680] Length = 409 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 118/315 (37%), Positives = 180/315 (57%), Gaps = 13/315 (4%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V + + +L + + L +G+ ++S LD+ EE+ED L+ +D+GV Q Sbjct: 100 EVPEPTAGRLVRLRTRLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVQPTQ 159 Query: 65 KIVEEL------LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118 ++VE L L R +++ + L+ + + N D P +++VVG Sbjct: 160 ELVERLRERVKVLGTRTPQELRGLLREELLQLLVPEFDREVRTDSNLDT---PGIVMVVG 216 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNG GKTT GKL++ + G V+L A DTFR+AA DQL+ W +R A V G D Sbjct: 217 VNGTGKTTTTGKLARVLVADGKHVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDP 276 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237 A++A++A K+ + DV++IDTAGRLH + LM +GK+ RV+++ HAP VL VL Sbjct: 277 ASIAFDAVKEGIEEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HAPLDEVLLVL 333 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DATTGQN L Q +F V TG+++TK+DGTA+GG +I + +PV +G+GEG +D Sbjct: 334 DATTGQNGLVQARVFAEVVNITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADD 393 Query: 298 LEPFVAKDFSAVITG 312 L PF + F + G Sbjct: 394 LAPFEPEAFVDALVG 408 >gi|224013926|ref|XP_002296627.1| signal recognition particle alpha [Thalassiosira pseudonana CCMP1335] gi|220968979|gb|EED87323.1| signal recognition particle alpha [Thalassiosira pseudonana CCMP1335] Length = 287 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 101/277 (36%), Positives = 160/277 (57%), Gaps = 22/277 (7%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIH-KMLMPLSKPFN 104 ++LED L+++D+G+A ++EE R+ ++ S + D + L+ K+L L N Sbjct: 11 DQLEDTLLQADLGMATTDDVLEE---ARFLREESTEIFSRDDIKALLRGKLLEALGPSTN 67 Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 H I+ G NG+GKTT IGKL+ ++ +++G KV+LAA DTFR+ A+ QL+ WAD Sbjct: 68 NPTPLTIHFIM--GANGMGKTTTIGKLAHRLKTESGQKVLLAACDTFRAGAVAQLEQWAD 125 Query: 164 RTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 R D F +E + +A+ + A +A + +VL++DT+GRL NN L A + KM RV+ Sbjct: 126 RAQVDCFSPNESTNGPSAVLFGALDKAIKEDYNVLLVDTSGRLSNNDALTAELVKMKRVI 185 Query: 223 -KRL------------DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 KR+ + PH L V+DA G+ AL + + G +GLI+TK+DG+ Sbjct: 186 QKRMSTKFDSAVKPIPNESVPHETLLVIDAAQGRMALDSAKQWDKEVGLSGLILTKLDGS 245 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 A+GG ++ + +PV +GVGEG+ DL F + F Sbjct: 246 AKGGSVVAVSRELGLPVKLVGVGEGLEDLRDFEPESF 282 >gi|294786173|ref|ZP_06751427.1| signal recognition particle-docking protein FtsY [Parascardovia denticolens F0305] gi|315227380|ref|ZP_07869167.1| cell division protein FtsY [Parascardovia denticolens DSM 10105] gi|294485006|gb|EFG32640.1| signal recognition particle-docking protein FtsY [Parascardovia denticolens F0305] gi|315119830|gb|EFT82963.1| cell division protein FtsY [Parascardovia denticolens DSM 10105] Length = 396 Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 121/314 (38%), Positives = 178/314 (56%), Gaps = 16/314 (5%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S + +L A +S + + I+S L++ E++ED L+ D+G ++++V +L Sbjct: 89 SRLVRLRAKLARSSNPFGKALFSILSQDNLNESDWEDVEDTLLLVDVGAEASERLVSQLR 148 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPH------VILVVGVNGV 122 T + + ++D ++ L+ L P D S RP I++VGVNG Sbjct: 149 TDARVQGSKDPQAVHD---MLRAKLLDLVDP-GMDRSLAAERPESVGKTSAIIMVGVNGS 204 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAAL 181 GKTT GKL++ G V+L A DTFR+AA DQL+ W R V S+ G+D A++ Sbjct: 205 GKTTTSGKLARLFVAEGKSVVLGAADTFRAAAADQLETWGSRVGVPVVRSDKEGADPASV 264 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 A+EA ++AQ K DVLIIDTAGRL N + LM +GK+ RV ++ P VL VLDATT Sbjct: 265 AFEAAQKAQEAKADVLIIDTAGRLQNKANLMDELGKIRRVTEKTLPV--DEVLLVLDATT 322 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQN + Q +F G TG+++TK+DG+ARGG +I + +PV +G+GEG +DL PF Sbjct: 323 GQNGMEQARVFAEAIGITGVVLTKLDGSARGGIVISVQQALGVPVKLVGLGEGPDDLAPF 382 Query: 302 VAKDFSAVITGCLD 315 + F I G D Sbjct: 383 DPESFVDGIIGDED 396 >gi|326422481|gb|EGD71879.1| Signal recognition particle receptor [Candidatus Parvarchaeum acidophilus ARMAN-5_'5-way FS'] Length = 378 Score = 159 bits (401), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 103/287 (35%), Positives = 155/287 (54%), Gaps = 34/287 (11%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTK------------RYAKDV---SVQRVL-- 85 D + E++ +L+ +++ ++V + I ++L K +Y +V S+ L Sbjct: 108 DMIYSEIKTVLLENNVALSVLENIQKDLKNKLVGESVSMFGNKKYLNNVIRDSIANTLIG 167 Query: 86 YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 YD E I K+ S +P VILV+GVNG GKTT I KL K GLK ++A Sbjct: 168 YDKEEFISKIK-----------SKKPFVILVIGVNGAGKTTTIAKLCKLFLSKGLKPVIA 216 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 AGDTFR+A+I+QL+I A + + GSD AA+A++A K A + K DV++IDTAGR Sbjct: 217 AGDTFRAASIEQLEIHAKKLKVPIIKHTYGSDPAAVAFDAIKHANSAKEDVVVIDTAGRS 276 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 N L+ + K+ RV K P + + DA TG + ++Q E+F G I++K Sbjct: 277 DINKNLIEELKKVKRVSK------PDMTIFIGDALTGNDVVKQAEVFDKEIGIDANILSK 330 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 D +GG ++ I K P+ FLGVG+G +DL PF + + I G Sbjct: 331 ADVDKKGGAVLSISYITKKPILFLGVGQGYDDLIPFNKEKTAEFILG 377 >gi|13508164|ref|NP_110113.1| cell division protein FtsY [Mycoplasma pneumoniae M129] gi|2500880|sp|P75362|FTSY_MYCPN RecName: Full=Cell division protein ftsY homolog gi|1674100|gb|AAB96064.1| cell division protein FtsY [Mycoplasma pneumoniae M129] gi|301633304|gb|ADK86858.1| signal recognition particle-docking protein FtsY [Mycoplasma pneumoniae FH] Length = 348 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 104/325 (32%), Positives = 169/325 (52%), Gaps = 20/325 (6%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 +NQK + L+ K FA+T KL + ++ +E L + L+ DIG Sbjct: 33 ANQKSYYQGLN---KSANSFANTINKLAANYVTV------NEQFQESLFEELVLLDIGYH 83 Query: 62 VAQKI----VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVI 114 A KI V+EL +R + +Q ++ D +LI + K F D + ++ +V Sbjct: 84 AATKICDAIVQELKLQRVSDPQLIQEIIVD--KLIVYYIQ--DKLFETDLTVEANKTNVY 139 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 L VGVNGVGKTT + KL+ +++ +V++ AGDTFR+ A+ QL WA R D V Sbjct: 140 LFVGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAVAQLAEWAQRIGCDIVLPNP 199 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 + A+ + +Q + D ++ DT+GRL N + LM + K+ ++++++ P L Sbjct: 200 KEETPAVIFRGVQQGIQNEYDFVLCDTSGRLQNKTNLMNELKKIYQIVQKVSSAKPQETL 259 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VLD TTGQ+ L Q ++F+ TG+I+TKMD +++GG ++ I +PV +G GE Sbjct: 260 LVLDGTTGQSGLAQAKVFNEFTELTGIILTKMDSSSKGGIILAIKDLFNLPVKLIGFGET 319 Query: 295 INDLEPFVAKDFSAVITGCLDYGEE 319 DL F + + +T L E Sbjct: 320 TADLAAFDLEQYVLGLTKNLSLNHE 344 >gi|326771791|ref|ZP_08231076.1| signal recognition particle-docking protein FtsY [Actinomyces viscosus C505] gi|326637924|gb|EGE38825.1| signal recognition particle-docking protein FtsY [Actinomyces viscosus C505] Length = 403 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 112/278 (40%), Positives = 172/278 (61%), Gaps = 15/278 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMP------ 98 EE+ED L+ SD+G+ V +++EL T+ S + V +EL+ K++ P Sbjct: 129 EEIEDTLLTSDLGIEVTTSLMDELRTQAKVLGTSDPEAVRTVLRAELL-KLVDPSLDRSL 187 Query: 99 -LSKPFNWDFSH-RPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 L +P + + +P IL+VGVNG GKTT GKL++ + V+L A DTFR+AA Sbjct: 188 NLERPTPAEGAQGKPAAAILMVGVNGTGKTTTCGKLARVLVAQDRTVVLGAADTFRAAAA 247 Query: 156 DQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 +QL W +R D V SE G+D A++AY+A +A A++ DV+++DTAGRL N + LM Sbjct: 248 EQLSTWGERVGVDVVRSEKEGADPASVAYDAACEAAAQEADVVVVDTAGRLQNKAGLMDE 307 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 +GK+ RV++++ P +L VLDATTGQN +RQ ++F G TG+++TK+DGTA+GG Sbjct: 308 LGKIRRVMEKIAPVG--EILLVLDATTGQNGMRQAQVFSEAVGVTGIVLTKLDGTAKGGI 365 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 ++ + +PV +G+GEG +DL PF + F + G Sbjct: 366 VVTVQKELGVPVKLVGLGEGADDLAPFDPEGFVDALLG 403 >gi|295836302|ref|ZP_06823235.1| signal recognition particle FtsY [Streptomyces sp. SPB74] gi|295825944|gb|EFG64559.1| signal recognition particle FtsY [Streptomyces sp. SPB74] Length = 411 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 117/322 (36%), Positives = 178/322 (55%), Gaps = 27/322 (8%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V + + +L + + L +G+ ++S LD+ EE+ED L+ +D+GVA Q Sbjct: 102 EVPEPTAGRLVRLRTRLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVAPTQ 161 Query: 65 KIVEELLTK-------------RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111 ++VE L + ++ + V D +H P +P Sbjct: 162 ELVERLRERVRVLGTRTPDELRTLLREELLTLVGADTDRTVHTEAAP----------DKP 211 Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 +++VVGVNG GKTT GKL++ + G V+L A DTFR+AA DQL+ W +R A V Sbjct: 212 GIVMVVGVNGTGKTTTTGKLARVLVADGKSVVLGAADTFRAAAADQLQTWGERVGARTVR 271 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP- 230 G D A++A++A K+ A+K D ++IDTAGRLH + LM +GK+ RV+++ AP Sbjct: 272 GPEGGDPASIAFDAVKEGVAEKADAVLIDTAGRLHTKTGLMDELGKVKRVVEK---QAPV 328 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 VL VLDATTGQN L Q +F V TG+++TK+DGTA+GG ++ + +PV +G Sbjct: 329 DEVLLVLDATTGQNGLIQARVFAEVVSITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIG 388 Query: 291 VGEGINDLEPFVAKDFSAVITG 312 +GEG +DL PF F + G Sbjct: 389 LGEGADDLAPFEPGAFVDALIG 410 >gi|229258568|gb|ACQ45589.1| cell division protein FtsY [Calyptogena ponderosa endosymbiont] gi|229258570|gb|ACQ45590.1| cell division protein FtsY [Vesicomya cordata gill symbiont] Length = 194 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 74/159 (46%), Positives = 109/159 (68%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + VILVVGVNG GKTT+IGK++K + G VMLAAGDTFR+AA++QLK+W R + Sbjct: 36 NETFVILVVGVNGAGKTTLIGKMAKSFQNQGKSVMLAAGDTFRAAAVEQLKVWGQRNNIP 95 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V G+D A++ ++A + AQAK +D+LI DTAGRLH + LM + K+ RV+ + + + Sbjct: 96 VVAQTTGADTASVIFDACQSAQAKNIDILIADTAGRLHTQNNLMQELAKIKRVIAKHNAN 155 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 APH + V+D +GQNA+ Q + F+ +G+ +TK+D Sbjct: 156 APHETMLVIDGGSGQNAINQAKEFNKAVTLSGISITKLD 194 >gi|329936732|ref|ZP_08286439.1| Signal recognition particle receptor protein [Streptomyces griseoaurantiacus M045] gi|329303962|gb|EGG47845.1| Signal recognition particle receptor protein [Streptomyces griseoaurantiacus M045] Length = 398 Score = 159 bits (401), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 117/301 (38%), Positives = 178/301 (59%), Gaps = 7/301 (2%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74 +L + + L +G+ ++S LD+ EE+ED L+ +D+GV Q++VE L + R Sbjct: 100 RLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVQPTQELVERLRERVR 159 Query: 75 YAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLS 132 + Q + + E + +L+P + D + P +++VVGVNG GKTT GKL+ Sbjct: 160 VLGTRTPQELRTLLREELLTILVPEFDRTVKTDSNLDTPGIVMVVGVNGTGKTTTTGKLA 219 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 + + G V+L A DTFR+AA DQL+ W +R A V G D A++A++A K+ Sbjct: 220 RVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIEA 279 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEM 251 DV++IDTAGRLH + LM +GK+ RV+++ HAP VL VLDATTGQN L Q + Sbjct: 280 GADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HAPLDEVLLVLDATTGQNGLVQARV 336 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F V +G+++TK+DGTA+GG +I + +PV +G+GEG +DL PF + F + Sbjct: 337 FAEVVDISGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADDLAPFEPEAFVDALI 396 Query: 312 G 312 G Sbjct: 397 G 397 >gi|297571145|ref|YP_003696919.1| signal recognition particle-docking protein FtsY [Arcanobacterium haemolyticum DSM 20595] gi|296931492|gb|ADH92300.1| signal recognition particle-docking protein FtsY [Arcanobacterium haemolyticum DSM 20595] Length = 395 Score = 158 bits (400), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 116/282 (41%), Positives = 168/282 (59%), Gaps = 9/282 (3%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT--KRYAKDVSVQRVL 85 L + + I+S L EELE+ L+ +D+G+ I++ L T K D V+ +L Sbjct: 114 LGKALLSILSRGELSAADWEELEETLLMADVGLDATTDILDSLRTAVKVAGSDADVRALL 173 Query: 86 YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 +EL+ + + + N P IL+VGVNG GKTT GKL++ + V+L Sbjct: 174 R--TELLKAVHIDKDRSLN--LGAAPSTILMVGVNGTGKTTTTGKLARLLVAEEHSVLLG 229 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 A DTFR+AA DQL W +R D V S+ G+D A++A+EA KQ VDV+I+DTAGR Sbjct: 230 AADTFRAAAADQLSTWGERVGVDVVRSDREGADPASVAFEAVKQGADAGVDVVIVDTAGR 289 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 L N + LM +GK+ RV+++ P VL VLDATTGQN +RQ E+F AG TG++++ Sbjct: 290 LQNKAGLMDELGKIKRVMEKTVPTG--EVLLVLDATTGQNGMRQAEVFAEAAGITGIVLS 347 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 K+DG+A+GG +I + +PV F+G+GEG +D PF F Sbjct: 348 KLDGSAKGGIVISVQRALGVPVKFVGLGEGADDFAPFDPSTF 389 >gi|291454401|ref|ZP_06593791.1| signal recognition particle [Streptomyces albus J1074] gi|291357350|gb|EFE84252.1| signal recognition particle [Streptomyces albus J1074] Length = 411 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 115/300 (38%), Positives = 171/300 (57%), Gaps = 5/300 (1%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L A + L +G+ ++S LD+ EE+ED L+ +D+GV Q++VE L + Sbjct: 113 RLRARLARSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVVPTQELVERLRERVR 172 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVIGKLS 132 + L + L+ P + P V++VVGVNG GKTT GKL+ Sbjct: 173 VLGTRTPQELRTLLREELLKLVATDAPRAVKTDNGLETPAVVMVVGVNGTGKTTTTGKLA 232 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 + + G V+L A DTFR+AA DQL+ W +R A V G D A++A++A K+ A+ Sbjct: 233 RVLVADGKSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAE 292 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 DV++IDTAGRLH + LM +GK+ RV+++ P VL VLDATTGQN L Q +F Sbjct: 293 HADVVLIDTAGRLHTKAGLMDELGKVKRVVEKQAPL--DEVLLVLDATTGQNGLVQARVF 350 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 V TG+++TK+DGTA+GG ++ + +PV +G+GEG +DL PF + F + G Sbjct: 351 AEVVNITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGPDDLAPFDPEAFVDALIG 410 >gi|282855440|ref|ZP_06264761.1| signal recognition particle-docking protein FtsY [Pyramidobacter piscolens W5455] gi|282586736|gb|EFB91983.1| signal recognition particle-docking protein FtsY [Pyramidobacter piscolens W5455] Length = 309 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 104/276 (37%), Positives = 168/276 (60%), Gaps = 6/276 (2%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKM--LM 97 +D+ +LED+LI D+G+ A+ ++ E+ + + +L SEL+ ++ + Sbjct: 30 IDEDFWLDLEDVLIAGDVGLETAEALLGEMRAYHAQRRCDGKELLRHFKSELVKRLGGVP 89 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 + P + IL+VGVNG GKTT GKL+ +G KV++AA DTFR+AAI+Q Sbjct: 90 RMGAPL-LSGENGLAAILMVGVNGSGKTTTTGKLAWLYKKSGKKVIVAAADTFRAAAIEQ 148 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L++W +++ + + G D+AA+ ++A A++ DVLI+DTAGRL + LM +GK Sbjct: 149 LQVWGEKSGIRVIAQKQGGDSAAVVFDALSAARSSGADVLIVDTAGRLQSKHNLMEELGK 208 Query: 218 MIRVLKR-LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + RV++R + SVL VLD+ GQNA RQ E+F+ VA TG+I+ K D TA+GG ++ Sbjct: 209 IYRVIEREVGKERMESVL-VLDSVIGQNAFRQAEVFNEVAPLTGVILAKYDNTAKGGIVL 267 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 PI ++P+ ++G+GE DL+ F A++F + G Sbjct: 268 PIADKLRLPIRYIGLGEAPEDLKLFNAEEFVEALFG 303 >gi|239982559|ref|ZP_04705083.1| signal recognition particle [Streptomyces albus J1074] Length = 393 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 115/300 (38%), Positives = 171/300 (57%), Gaps = 5/300 (1%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L A + L +G+ ++S LD+ EE+ED L+ +D+GV Q++VE L + Sbjct: 95 RLRARLARSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVVPTQELVERLRERVR 154 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVIGKLS 132 + L + L+ P + P V++VVGVNG GKTT GKL+ Sbjct: 155 VLGTRTPQELRTLLREELLKLVATDAPRAVKTDNGLETPAVVMVVGVNGTGKTTTTGKLA 214 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 + + G V+L A DTFR+AA DQL+ W +R A V G D A++A++A K+ A+ Sbjct: 215 RVLVADGKSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAE 274 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 DV++IDTAGRLH + LM +GK+ RV+++ P VL VLDATTGQN L Q +F Sbjct: 275 HADVVLIDTAGRLHTKAGLMDELGKVKRVVEKQAPL--DEVLLVLDATTGQNGLVQARVF 332 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 V TG+++TK+DGTA+GG ++ + +PV +G+GEG +DL PF + F + G Sbjct: 333 AEVVNITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGPDDLAPFDPEAFVDALIG 392 >gi|319951004|ref|ZP_08024874.1| signal recognition particle-docking protein FtsY [Dietzia cinnamea P4] gi|319435347|gb|EFV90597.1| signal recognition particle-docking protein FtsY [Dietzia cinnamea P4] Length = 379 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 114/281 (40%), Positives = 170/281 (60%), Gaps = 17/281 (6%) Query: 42 DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101 D+ EE+ED LI +D+G Q++V+ L + + V R +V +L+ + L+ Sbjct: 107 DEDAWEEIEDTLIMADLGATTTQRVVDRLREEIATRQV---RTEAEVRDLLRQTLIDNLH 163 Query: 102 PFNWDFSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 P +D S R P V+LVVGVNG GKTT GKL++ + G ++L A DTFR+AA Sbjct: 164 P-EYDRSLRALPNDGTPAVLLVVGVNGTGKTTTTGKLARVLVADGRAILLGAADTFRAAA 222 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 DQL+ WA+R A+ V + G+D A++A++A ++ VD +++DTAGRLH + LM Sbjct: 223 ADQLQTWAERVGAEVVRGKEGADPASVAFDAVRRGVETGVDAVLVDTAGRLHTKAGLMDE 282 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 +GK+ RV+++ P VL V+DATTGQN L Q +F V TG+++TK+DGTA+GG Sbjct: 283 LGKVKRVVEKKTPV--DEVLLVIDATTGQNGLMQARVFKEVVDITGVVLTKLDGTAKGG- 339 Query: 275 LIPIVVTHK--IPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 I V H+ +PV +G+GEG +DL PF + F + G Sbjct: 340 -IVFQVQHELGVPVKLVGLGEGADDLAPFTPEAFVDALLGT 379 >gi|312880079|ref|ZP_07739879.1| signal recognition particle-docking protein FtsY [Aminomonas paucivorans DSM 12260] gi|310783370|gb|EFQ23768.1| signal recognition particle-docking protein FtsY [Aminomonas paucivorans DSM 12260] Length = 314 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 118/321 (36%), Positives = 176/321 (54%), Gaps = 27/321 (8%) Query: 14 IRKLTKGF----ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 ++ L KGF + + G+ + S + + E+LE+ L+ D+G+ + + ++E+ Sbjct: 1 MKGLWKGFWDKVKDIRSRWEYGVAGLFSDDPVSEEFFEKLEEHLLAGDVGLELTESLLED 60 Query: 70 LLTKRYAKDVSVQRV----------LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 L + +AK V + + D + + KM PLS F VIL+VGV Sbjct: 61 L--RSFAKREKVGKASDLKQHFAQEIKDTLQRVPKMGEPLS------FDGPLGVILLVGV 112 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NG GKTT KL+ G V+LAA DTFR+AAIDQL+IW +RT + GSDAA Sbjct: 113 NGSGKTTTAAKLAASFRKRGETVVLAAADTFRAAAIDQLRIWGERTGTRVIAQSPGSDAA 172 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR-LDPHAPHSVLQVLD 238 A+ ++A + ++ V+++DTAGRLH LM + K+ RV +R +DP ++L VLD Sbjct: 173 AVVFDALQAVKSVGRGVVVVDTAGRLHTKHNLMEELTKIHRVARREVDPSCIETLL-VLD 231 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A TGQN L Q E FHA TG ++TK D TARGG L+ + +PV ++G+GE DL Sbjct: 232 AVTGQNGLVQAETFHAAFPLTGFVLTKFDHTARGGILLSLASRLALPVRYVGLGEKEEDL 291 Query: 299 EPFVAKDFSAVITGCLDYGEE 319 + F D + + G L +E Sbjct: 292 DSF---DVDSFVEGLLSLKQE 309 >gi|325963725|ref|YP_004241631.1| signal recognition particle-docking protein FtsY [Arthrobacter phenanthrenivorans Sphe3] gi|323469812|gb|ADX73497.1| signal recognition particle-docking protein FtsY [Arthrobacter phenanthrenivorans Sphe3] Length = 402 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 120/284 (42%), Positives = 175/284 (61%), Gaps = 12/284 (4%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 +G+ ++SS R+D+ V +E+E+ L+ +D+G ++V+ L R V R V Sbjct: 118 KGLLALLSSDRIDEDVWDEVEETLLLADLGTEPTMQLVDAL---RERVKVLGTRSPEQVK 174 Query: 90 ELIHKMLMPLSKP-----FNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143 EL+ + L+ L P N + +P V++VVGVNGVGKTT +GKL++ + V+ Sbjct: 175 ELLREELIKLVDPTMDRTLNVQRHADKPAVMMVVGVNGVGKTTTVGKLARVLVAEDKDVL 234 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTA 202 L A DTFR+AA +QL W R V S+I G+D A++AYEA K ++VDV++IDTA Sbjct: 235 LGAADTFRAAAAEQLATWGQRVGVPTVKSDIDGADPASVAYEAVKAGIDQEVDVVMIDTA 294 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRL N LM +GK+ RV+++L VL VLDATTGQN L Q +F V TG++ Sbjct: 295 GRLQNKVGLMDELGKVKRVIEKL--AEVDEVLLVLDATTGQNGLNQARVFSEVVNITGIV 352 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +TK+DGTA+GG ++ I T +PV +G+GEG +DL PF A+ F Sbjct: 353 LTKLDGTAKGGIVVAIQKTLGVPVKLIGLGEGADDLAPFEAEGF 396 >gi|302348911|ref|YP_003816549.1| Probable signal recognition particle protein [Acidilobus saccharovorans 345-15] gi|302329323|gb|ADL19518.1| Probable signal recognition particle protein [Acidilobus saccharovorans 345-15] Length = 304 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 100/297 (33%), Positives = 166/297 (55%), Gaps = 18/297 (6%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 +R KGFA++ +KE + S + + EEL L+ +D+ VA+ IV EL TK Sbjct: 5 LRSALKGFAAS---IKEAVEKKELSEKDLETPLEELMINLVEADVAYDVAESIVMELRTK 61 Query: 74 ----RYAKDVSVQRVLYD-----VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 + + ++V+ + + ++ L + +S+ S P+VI GVNGVGK Sbjct: 62 LIGSKVPRGINVEDYVLNSLKSYIATLFSNGIDLVSEAKRKCSSGLPYVITFFGVNGVGK 121 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT I K++ + +GL ++AA DTFR+ A +QL+ A+R F+ G+D A++AY Sbjct: 122 TTTIAKVAYMLKSSGLTPVIAAADTFRAGAQEQLRTHAERLGVAFIGGSYGADPASVAYN 181 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A A+ ++V ++IDTAGR+H ++ LM+ + K++RV P + V+D+ TG + Sbjct: 182 AINYAKNRRVCAVLIDTAGRMHVDADLMSELKKIVRVAN------PDLRVLVVDSLTGND 235 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 A+ Q + F+ G +I+TK+D +GG I + T K PV ++GVG+ +DL PF Sbjct: 236 AVEQAKSFNENVGIDAIILTKLDADLKGGVAISVAATTKKPVIYVGVGQNYSDLRPF 292 >gi|224531980|ref|ZP_03672612.1| signal recognition particle-docking protein FtsY [Borrelia valaisiana VS116] gi|224511445|gb|EEF81851.1| signal recognition particle-docking protein FtsY [Borrelia valaisiana VS116] Length = 281 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 92/279 (32%), Positives = 166/279 (59%), Gaps = 9/279 (3%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 E I ++ S + + V E LE++L+ SDI + +I+ +L TK K+ + ++ + Sbjct: 5 EKIKNLFKSNQ-QENVIENLEEILLESDINNEIVIEIINKL-TKEKNKNEEI--IIEKLK 60 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 EL+ + +K F + +++ +++L+VG+NG+GKT+ I KL+ K+ + G ++++A DT Sbjct: 61 ELLSNYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADT 117 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+AAI+Q+KI+ + + GSD +A+ +++ A+ K D LIIDTAGRL N Sbjct: 118 FRAAAIEQMKIYGKQIGIRIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQNKE 177 Query: 210 ILMAGIGKMIRV-LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 L+ + K+ V LK++ + + + + V+D+T G+N Q E+F+ G+I+TK+D Sbjct: 178 NLIKELQKINNVILKQIKNTNINYQKILVIDSTIGKNTNNQAEIFNNAIEIDGIIITKLD 237 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++R G LI I K P+YF GE + D++ F ++ Sbjct: 238 SSSRAGTLINISKILKKPIYFTTFGEKLEDIKEFDINEY 276 >gi|225552094|ref|ZP_03773034.1| signal recognition particle-docking protein FtsY [Borrelia sp. SV1] gi|225371092|gb|EEH00522.1| signal recognition particle-docking protein FtsY [Borrelia sp. SV1] Length = 281 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 92/274 (33%), Positives = 169/274 (61%), Gaps = 9/274 (3%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 E I ++ S++ + V E LED+L+ SDI + +I+ +L TK K+ + + ++ + Sbjct: 5 EKIKNLFKSKQ-QENVIENLEDILLESDINNEIVIEIINKL-TKE--KNENEKTIIGKLK 60 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 EL+ + +K F + +++ +++L+VG+NG+GKT+ I KL+ K+ + G ++++A DT Sbjct: 61 ELLSSYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADT 117 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+AAI+Q+KI+ ++ + GSD +A+ +++ A+ KK D LIIDTAGRL N Sbjct: 118 FRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKLKKHDALIIDTAGRLQNKE 177 Query: 210 ILMAGIGKMIRV-LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 L+ + K+ V LK++ + + + + V+D+T G+NA Q E+F+ G+I+TK+D Sbjct: 178 NLIKELQKINNVILKQIKNTNINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITKLD 237 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +++ G +I I + P+YF GE + D++ F Sbjct: 238 SSSKAGTIINISKILEKPIYFTTFGEKLEDIKEF 271 >gi|323475112|gb|ADX85718.1| signal recognition particle-docking protein FtsY [Sulfolobus islandicus REY15A] gi|323477843|gb|ADX83081.1| signal recognition particle-docking protein FtsY [Sulfolobus islandicus HVE10/4] Length = 310 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 95/284 (33%), Positives = 165/284 (58%), Gaps = 25/284 (8%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----LTKRYAKDVSVQRVLYD---- 87 I + ++D V EEL L+ SD+ VA+KI+E+L + K+ + ++R++ D Sbjct: 33 IKEKDIEDFV-EELRYQLLESDVSFEVAEKILEDLKENIIGKKVRRSEDLERIVKDSLKK 91 Query: 88 -VSELIHKMLMPLSKPFN----WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 ++E+I K +KP N S +P++I+ G+NGVGKTT I K + + GL Sbjct: 92 SITEIITK-----NKPMNVLEEIKKSTKPYIIIFFGINGVGKTTTIAKFAYMLKKNGLSC 146 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +++A DTFR+AA +QL+I A + + G D A++AY+A + A+++ +DV++IDTA Sbjct: 147 IISASDTFRAAAQEQLEIHARNLEIPLIKGKYGGDPASVAYDAIRAAKSRGIDVVLIDTA 206 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GR+H ++ L+ + +++ + + P+ + VLD+ G +AL Q + F G +I Sbjct: 207 GRMHTDTDLVNELKRVVNITR------PNLKILVLDSLGGNDALEQAKYFENNVGFDLVI 260 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +TK+D +GG ++ + PV +LGVG+ +DL PF A+ F Sbjct: 261 LTKVDADVKGGVILSLAYELNKPVGYLGVGQTYDDLIPFNAEWF 304 >gi|256397103|ref|YP_003118667.1| signal recognition particle-docking protein FtsY [Catenulispora acidiphila DSM 44928] gi|256363329|gb|ACU76826.1| signal recognition particle-docking protein FtsY [Catenulispora acidiphila DSM 44928] Length = 395 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 118/292 (40%), Positives = 167/292 (57%), Gaps = 19/292 (6%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87 L +G+ ++S +LD+ EE+ED LI +D+GV A ++V L R V R + + Sbjct: 104 LGQGLLKLLSRDKLDEATWEEIEDTLIAADLGVGPATELVGRL---RTNTRVQGSRTVDE 160 Query: 88 VSELIHKMLMPLSKPFNWDFS-------------HRPHVILVVGVNGVGKTTVIGKLSKK 134 L+ + L+ L P D S RP V +VVGVNG GKTT GKL++ Sbjct: 161 ARALLREELIALIDP-TLDRSLKVAKHPAADGAPERPAVAMVVGVNGTGKTTTTGKLARV 219 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 + G V+L A DTFR+AA DQL+ W R A V G+D A++A+EA K+ V Sbjct: 220 LVADGYTVVLGAADTFRAAAADQLQTWGQRVGAYTVRGAEGADPASVAFEAVKEGTGMGV 279 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D ++IDTAGRLH + LM +GK+ RV ++ VL VLDATTGQN L Q +F Sbjct: 280 DTVLIDTAGRLHTKTGLMDELGKVKRVAEKQ--GTVDEVLLVLDATTGQNGLVQARVFAE 337 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 V TG+++TK+DGTA+GG ++ + +PV +G+GEG +DL PF + F Sbjct: 338 VVDVTGIVLTKLDGTAKGGIVVAVQKELGVPVKLVGLGEGPDDLAPFDPEAF 389 >gi|111114898|ref|YP_709516.1| signal recognition particle-docking protein FtsY [Borrelia afzelii PKo] gi|216263934|ref|ZP_03435928.1| signal recognition particle-docking protein FtsY [Borrelia afzelii ACA-1] gi|110890172|gb|ABH01340.1| signal recognition particle-docking protein FtsY [Borrelia afzelii PKo] gi|215979978|gb|EEC20800.1| signal recognition particle-docking protein FtsY [Borrelia afzelii ACA-1] Length = 281 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 89/261 (34%), Positives = 160/261 (61%), Gaps = 8/261 (3%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102 + V E LED+L+ SDI + +I+ +L TK K+ + + ++ + EL+ + +K Sbjct: 17 ENVIENLEDILLESDINNEIVIEIINKL-TKE--KNKNEKTIIEKLKELLSDYIN--TKK 71 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 F + +++ +++L+VG+NG+GKT+ I KL+ K+ + G ++++A DTFR+AAI+Q+KI+ Sbjct: 72 FTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADTFRAAAIEQMKIYG 130 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV- 221 ++ + GSD +A+ +++ A+ K D LIIDTAGRL N L+ + K+ V Sbjct: 131 EQIGIRIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQNKENLIKELQKINNVI 190 Query: 222 LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 LK++ + + + + V+D+T G+N Q E+F+ G+I+TK+D ++R G +I I Sbjct: 191 LKQMKNTNINYQKILVIDSTIGKNTNSQAEIFNKAIEIDGIIITKLDSSSRAGAIINISK 250 Query: 281 THKIPVYFLGVGEGINDLEPF 301 K P+YF GE + D++ F Sbjct: 251 ILKKPIYFTTFGEKLEDIKEF 271 >gi|238620250|ref|YP_002915076.1| signal recognition particle-docking protein FtsY [Sulfolobus islandicus M.16.4] gi|238381320|gb|ACR42408.1| signal recognition particle-docking protein FtsY [Sulfolobus islandicus M.16.4] Length = 310 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 94/284 (33%), Positives = 165/284 (58%), Gaps = 25/284 (8%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----LTKRYAKDVSVQRVLYD---- 87 I + ++D + EEL L+ SD+ VA+KI+E+L + K+ + ++R++ D Sbjct: 33 IKEKDIEDFI-EELRYQLLESDVSFEVAEKILEDLKENIIGKKVRRSEDLERIVKDSLKK 91 Query: 88 -VSELIHKMLMPLSKPFN----WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 ++E+I K +KP N S +P++I+ G+NGVGKTT I K + + GL Sbjct: 92 SITEIITK-----NKPMNVLEEIKKSTKPYIIIFFGINGVGKTTTIAKFAYMLKKNGLSC 146 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +++A DTFR+AA +QL+I A + + G D A++AY+A + A+++ +DV++IDTA Sbjct: 147 IISASDTFRAAAQEQLEIHARNLEIPLIKGKYGGDPASVAYDAIRAAKSRGIDVVLIDTA 206 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GR+H ++ L+ + +++ + + P+ + VLD+ G +AL Q + F G +I Sbjct: 207 GRMHTDTDLVNELKRVVNITR------PNLKILVLDSLGGNDALEQAKYFENNVGFDLVI 260 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +TK+D +GG ++ + PV +LGVG+ +DL PF A+ F Sbjct: 261 LTKVDADVKGGVILSLAYELNKPVGYLGVGQTYDDLIPFNAEWF 304 >gi|227497502|ref|ZP_03927731.1| signal recognition particle receptor [Actinomyces urogenitalis DSM 15434] gi|226833030|gb|EEH65413.1| signal recognition particle receptor [Actinomyces urogenitalis DSM 15434] Length = 325 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 108/274 (39%), Positives = 166/274 (60%), Gaps = 17/274 (6%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS--------VQRVLYDVSELIHKMLMP 98 EE+ED L+ SD+G+ V ++E L T+ D S ++R L + + + Sbjct: 49 EEIEDTLLTSDLGIEVTTALMETLRTQAKVLDTSDPTAIRGVLRRELLALVDPAMDRSLN 108 Query: 99 LSKP-----FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 L+ P F + S +L+VGVNG GKTT GKL++ + V++ A DTFR+A Sbjct: 109 LAPPQAAEGFTGEGSP-AAAVLMVGVNGTGKTTTCGKLARVLVAQDKTVLMGAADTFRAA 167 Query: 154 AIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 A +QL W +R + V SE G+D A++A++A QA A+ VDV+++DTAGRL N + LM Sbjct: 168 AAEQLGTWGERVGVEVVRSEREGADPASVAFDAAYQAAAQGVDVVLVDTAGRLQNKAGLM 227 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 +GK+ RV++++ P +L VLDATTGQN +RQ ++F G TG+++TK+DGTA+G Sbjct: 228 DELGKIKRVMEKVAPVG--EILLVLDATTGQNGMRQAQVFSEAVGVTGIVLTKLDGTAKG 285 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G ++ + +PV +G+GEG +DL PF + F Sbjct: 286 GIVVTVQRELGVPVKLVGLGEGADDLAPFDPEGF 319 >gi|21226912|ref|NP_632834.1| signal recognition particle subunit Ffh/SRP54 [Methanosarcina mazei Go1] gi|20905220|gb|AAM30506.1| signal recognition particle subunit Ffh/SRP54 [Methanosarcina mazei Go1] Length = 419 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 95/261 (36%), Positives = 144/261 (55%), Gaps = 13/261 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWD 106 ELE L+ SD+ V+V++ IVE + + + D V E + K ++ + +D Sbjct: 152 ELEMGLLESDLAVSVSEAIVESVKNQLTGTTKRIGSNTGDIVEEALKKAILDVVSANTFD 211 Query: 107 FSH------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 F +P I+ VG+NG GKTT I K++ ++ G V+LAAGDTFR+ AIDQL I Sbjct: 212 FDEYVKNRPKPVHIVFVGINGTGKTTSISKMTHRLLKLGYSVVLAAGDTFRAGAIDQLGI 271 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 ADR + + G+D AA+ Y+A + A+A +D ++ DTAGR+H N LMA + K+ R Sbjct: 272 HADRLGVKMIKHQAGADPAAVIYDAVQYAKAHNIDFVLSDTAGRMHTNMNLMAQMEKICR 331 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 V +P ++ V +A G +A+ + F+ G I+TK+D A+GG I I Sbjct: 332 V------SSPDLIIFVDEAVAGNDAVERAAQFNDAVPIDGSILTKIDADAKGGAAISIAY 385 Query: 281 THKIPVYFLGVGEGINDLEPF 301 P+ F GVG+G DL+ F Sbjct: 386 ITGKPILFFGVGQGYEDLKKF 406 >gi|195941815|ref|ZP_03087197.1| cell division protein, putative [Borrelia burgdorferi 80a] Length = 281 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 92/274 (33%), Positives = 167/274 (60%), Gaps = 9/274 (3%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 E I ++ S++ + V E LED+L+ SDI + +I+ +L TK K+ + + ++ + Sbjct: 5 EKIKNLFKSKQ-QENVIENLEDILLESDINNEIVIEIINKL-TKE--KNENEKTIIGKLK 60 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 EL+ + +K F + +++ +++L+VG+NG+GKT+ I KL+ K+ + G ++++A DT Sbjct: 61 ELLSSYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADT 117 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+AAI+Q+KI+ ++ + GSD +A+ +++ A+ K D LIIDTAGRL N Sbjct: 118 FRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQNKE 177 Query: 210 ILMAGIGKMIRV-LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 L+ + K+ V LK++ + + + V+D+T G+NA Q E+F+ G+I+TK+D Sbjct: 178 NLIKELQKINNVILKQIKNTDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITKLD 237 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +++ G +I I + P+YF GE I D++ F Sbjct: 238 SSSKAGTIINISKILEKPIYFTTFGEKIEDIKEF 271 >gi|25028526|ref|NP_738580.1| putative cell division protein FtsY [Corynebacterium efficiens YS-314] gi|23493811|dbj|BAC18780.1| putative cell division protein FtsY [Corynebacterium efficiens YS-314] Length = 636 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 113/305 (37%), Positives = 177/305 (58%), Gaps = 11/305 (3%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 I KL A + + + I+++ LD+ E++E +LI++D+G V ++VEEL K Sbjct: 337 IGKLRGRLARSQNVFGKSVLGILTAGDLDEDAWEDIEAMLIKADLGATVTMRVVEELRDK 396 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKTTV 127 VS + + ++ L+ +P + +P V+LVVGVNG GKTT Sbjct: 397 IATHGVSSE---AEARAMLRATLIDACRPDLDRSIRAMPYEGKPAVVLVVGVNGTGKTTT 453 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 GKL++ + G +V+L A DTFR+AA DQL+ W R A V G+D A++A++A Sbjct: 454 TGKLARVLVSMGHRVLLGAADTFRAAAADQLETWGRRVGATTVRGAEGADPASVAFDAVA 513 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 + ++ DV++IDTAGRLH ++ LM +GK+ RV+++ P VL VLDAT GQN ++ Sbjct: 514 KGVEQQADVVLIDTAGRLHTSTGLMDQLGKVKRVVEKKAPV--DEVLLVLDATVGQNGMQ 571 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 Q +F V TG+++TK+DGTA+GG + + +PV +G+GEG +DL PF + F Sbjct: 572 QARIFRDVVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFV 631 Query: 308 AVITG 312 + G Sbjct: 632 DALLG 636 >gi|203287545|ref|YP_002222560.1| signal recognition particle-docking protein [Borrelia recurrentis A1] gi|201084765|gb|ACH94339.1| signal recognition particle-docking protein [Borrelia recurrentis A1] Length = 281 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 98/262 (37%), Positives = 158/262 (60%), Gaps = 8/262 (3%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 E LEDLL+ +DI + +IVE + K AKD Q + + L+ L +P N + Sbjct: 21 ERLEDLLLEADIKNDIVIEIVEHI-QKIKAKDK--QETVLQLKNLLKSYLNQ--QPLNLE 75 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + R +++L++GVNGVGKT+ I KL+ K + G V++AA DTFR+AAI+QLKI +++ Sbjct: 76 -NKRLNILLILGVNGVGKTSSIIKLANKFKNEGKNVLIAAADTFRAAAIEQLKIQSEKIG 134 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR-- 224 + GSDAAA+ +++ A+ K D+LIIDTAGRL N L+ + KM +V+K+ Sbjct: 135 IKVISQNQGSDAAAVIFDSISSAKTKNYDILIIDTAGRLQNKENLIKELKKMDQVIKKQI 194 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 LD + + + V+D+ +G+N Q E+F G+I TK D ++R GG+I I + Sbjct: 195 LDTNINYKKILVIDSISGKNTNNQTEIFDKAIQIDGIIATKFDSSSRAGGIINISKLFQK 254 Query: 285 PVYFLGVGEGINDLEPFVAKDF 306 P+YF GE +++++ F +++ Sbjct: 255 PIYFFTFGEQVDNIKEFNTENY 276 >gi|203284002|ref|YP_002221742.1| signal recognition particle-docking protein FtsY [Borrelia duttonii Ly] gi|201083445|gb|ACH93036.1| signal recognition particle-docking protein FtsY [Borrelia duttonii Ly] Length = 281 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 98/262 (37%), Positives = 158/262 (60%), Gaps = 8/262 (3%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 E LEDLL+ +DI + +IVE + K AKD Q + + L+ L +P N + Sbjct: 21 ERLEDLLLEADIKNDIVIEIVEHI-QKIKAKDE--QETVLQLKNLLKSYLNQ--QPLNLE 75 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + R +++L++GVNGVGKT+ I KL+ K + G V++AA DTFR+AAI+QLKI +++ Sbjct: 76 -NKRLNILLILGVNGVGKTSSIIKLANKFKNEGKNVLIAAADTFRAAAIEQLKIQSEKIG 134 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR-- 224 + GSDAAA+ +++ A+ K D+LIIDTAGRL N L+ + KM +V+K+ Sbjct: 135 IKVISQNQGSDAAAVIFDSISSAKTKNYDILIIDTAGRLQNKENLIKELKKMDQVIKKQI 194 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 LD + + + V+D+ +G+N Q E+F G+I TK D ++R GG+I I + Sbjct: 195 LDTNINYKKILVIDSISGKNTNNQTEIFDKAIQIDGIIATKFDSSSRAGGIINISKLFQK 254 Query: 285 PVYFLGVGEGINDLEPFVAKDF 306 P+YF GE +++++ F +++ Sbjct: 255 PIYFFTFGEQVDNIKEFNTENY 276 >gi|327401640|ref|YP_004342479.1| signal recognition particle-docking protein FtsY [Archaeoglobus veneficus SNP6] gi|327317148|gb|AEA47764.1| signal recognition particle-docking protein FtsY [Archaeoglobus veneficus SNP6] Length = 376 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 104/300 (34%), Positives = 165/300 (55%), Gaps = 24/300 (8%) Query: 19 KGFASTSLKLKEGITDIISSRRL--DDG----VREELEDLLIRSDIGVAVAQKIVEELLT 72 K + +KE ++ +I R + D+G + ELE +L+ SD+ V ++I ++L Sbjct: 73 KKLVKPRIGIKEKVSALILRREIVIDEGKLDEILPELEIILLESDVAFEVVEEISDKLRQ 132 Query: 73 KRYAKDVSVQRVLYDV--SEL--IHKMLMPLSKPFNWDF-------SHRPHVILVVGVNG 121 + + V L D+ EL I K ++ +K F++D +P I+ VGVNG Sbjct: 133 RLVGRTKKVGEKLSDIVLDELRAIIKEILDTNK-FDFDAYIEEALKEKKPLNIIFVGVNG 191 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT I KL+K+++D G V+LAAGDTFR+ AI+QL+ A+R + + G+D AA+ Sbjct: 192 TGKTTTIAKLAKRLTDRGYSVVLAAGDTFRAGAIEQLEEHANRLGVKLIKHKAGADPAAV 251 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 Y+A A++K +DV++ DTAGR+H L+ + K+ RV K P + V ++ Sbjct: 252 IYDAIAHAESKGIDVVLADTAGRMHTKKNLIDQLEKIKRVTK------PDLTIFVDESIA 305 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 G +A+ + MF+ G G I+TK+D +GG I I PV F+GVG+ +DL F Sbjct: 306 GNDAVERARMFNEAVGIDGSILTKLDADPKGGTAISISYVTGKPVLFIGVGQEYDDLVKF 365 >gi|259507580|ref|ZP_05750480.1| cell division protein FtsY [Corynebacterium efficiens YS-314] gi|259164854|gb|EEW49408.1| cell division protein FtsY [Corynebacterium efficiens YS-314] Length = 624 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 113/305 (37%), Positives = 177/305 (58%), Gaps = 11/305 (3%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 I KL A + + + I+++ LD+ E++E +LI++D+G V ++VEEL K Sbjct: 325 IGKLRGRLARSQNVFGKSVLGILTAGDLDEDAWEDIEAMLIKADLGATVTMRVVEELRDK 384 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKTTV 127 VS + + ++ L+ +P + +P V+LVVGVNG GKTT Sbjct: 385 IATHGVSSE---AEARAMLRATLIDACRPDLDRSIRAMPYEGKPAVVLVVGVNGTGKTTT 441 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 GKL++ + G +V+L A DTFR+AA DQL+ W R A V G+D A++A++A Sbjct: 442 TGKLARVLVSMGHRVLLGAADTFRAAAADQLETWGRRVGATTVRGAEGADPASVAFDAVA 501 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 + ++ DV++IDTAGRLH ++ LM +GK+ RV+++ P VL VLDAT GQN ++ Sbjct: 502 KGVEQQADVVLIDTAGRLHTSTGLMDQLGKVKRVVEKKAPV--DEVLLVLDATVGQNGMQ 559 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 Q +F V TG+++TK+DGTA+GG + + +PV +G+GEG +DL PF + F Sbjct: 560 QARIFRDVVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFV 619 Query: 308 AVITG 312 + G Sbjct: 620 DALLG 624 >gi|257055013|ref|YP_003132845.1| signal recognition particle-docking protein FtsY [Saccharomonospora viridis DSM 43017] gi|256584885|gb|ACU96018.1| signal recognition particle-docking protein FtsY [Saccharomonospora viridis DSM 43017] Length = 516 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 110/267 (41%), Positives = 165/267 (61%), Gaps = 9/267 (3%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSK---- 101 E++ED L+ +D+G A +IVE L T+ A+ V + ++ + E++ L P S Sbjct: 246 EDVEDTLLIADLGAATTTEIVETLRTELSARGVRTSEQARALLREVLVNALGPDSDRSVR 305 Query: 102 --PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 P D + +P V+LV GVNG GKTT GKL++ + G V+L A DTFR+AA DQL+ Sbjct: 306 ALPHTVDGTKQPAVVLVAGVNGTGKTTTTGKLARVLVAQGHDVVLGAADTFRAAAADQLQ 365 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 WA+R A+ + + G+D A++A++A K+ + VD ++IDTAGRLH + LM +GK+ Sbjct: 366 TWAERVGAEVIRGKEGADPASVAFDAVKRGISSGVDAVLIDTAGRLHTKTGLMDELGKVK 425 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 RV+++ VL VLDATTGQN L Q +F V TG+++TK+DGTA+GG + + Sbjct: 426 RVVEKQ--AKVDEVLLVLDATTGQNGLAQARVFSEVVDVTGIVLTKLDGTAKGGIVFQVQ 483 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDF 306 +PV +G+GEG +DL PF + F Sbjct: 484 RELGVPVKLVGLGEGPDDLAPFEPEAF 510 >gi|224534870|ref|ZP_03675439.1| signal recognition particle-docking protein FtsY [Borrelia spielmanii A14S] gi|224513810|gb|EEF84135.1| signal recognition particle-docking protein FtsY [Borrelia spielmanii A14S] Length = 281 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 90/274 (32%), Positives = 166/274 (60%), Gaps = 9/274 (3%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 E I ++ S+ + + E LED+L+ SDI + +I+ +L TK K+ + + ++ + Sbjct: 5 EKIKNLFKSKE-QENILENLEDILLESDINNEIVIEIINKL-TKE--KNKTEKTIIEKLK 60 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 EL+ + +K F + +++ +++L+VG+NG+GKT+ I KL+ K+ + G ++++A DT Sbjct: 61 ELLSDYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADT 117 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+AAI+Q+KI+ ++ + GSD +A+ +++ A+ K D LIIDTAGRL N Sbjct: 118 FRAAAIEQMKIYGEQIGVKIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQNKE 177 Query: 210 ILMAGIGKMIRV-LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 L+ + K+ V LK++ + + + + V+D+T G+N Q E+F+ G+I+TK+D Sbjct: 178 NLIKELQKINNVILKQVKNTNINYQKILVIDSTIGKNTNSQAEIFNKSIEIDGIIITKLD 237 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 ++R G +I I + P+YF GE + D++ F Sbjct: 238 SSSRAGTIINISKILEKPIYFTTFGEKLEDIKEF 271 >gi|315090797|gb|EFT62773.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL110PA4] Length = 389 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 104/268 (38%), Positives = 161/268 (60%), Gaps = 11/268 (4%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87 L G+ +++S+ +LDD ++ E LI SD+GV ++VE+L ++ +S Sbjct: 105 LARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDS---AH 161 Query: 88 VSELIHKMLMPLSKP-----FNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 E++H L+ L P N D +P V+L+VGVNG GKTT GKL++ + G Sbjct: 162 AREVLHHELVELVGPDMDRSINLDRPEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEGKT 221 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 V+L A DTFR+AA +QL+ W +R V + G+D A++AYEA + VDV+++DT Sbjct: 222 VLLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQAGIDDGVDVVLVDT 281 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AGRLH + LM +GK+ RV+++L P + VL VLDATTGQN L Q +F V TG+ Sbjct: 282 AGRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLTQACIFSEVVDVTGI 339 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++K+DG+A+GG ++ + +PV + Sbjct: 340 VLSKLDGSAKGGIVVQVQRELGVPVKLI 367 >gi|300780915|ref|ZP_07090769.1| signal recognition particle GTPase [Corynebacterium genitalium ATCC 33030] gi|300532622|gb|EFK53683.1| signal recognition particle GTPase [Corynebacterium genitalium ATCC 33030] Length = 559 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 116/307 (37%), Positives = 177/307 (57%), Gaps = 13/307 (4%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 I +L + + + +G+ I+++ LD+ EE+ED LI +D+G + K+ E L K Sbjct: 257 IGRLRGRLSRSQNAIGQGLLGILTAGDLDEDAWEEIEDTLIMADLGAELTMKVTENLRAK 316 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-------HRPHVILVVGVNGVGKTT 126 + V+ + + ++ + L+ +P D S +P VILVVGVNG GKTT Sbjct: 317 IAERGVASEE---EARAMLRETLIEAGRP-ELDRSIKAMPNEGKPAVILVVGVNGTGKTT 372 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 GKL++ + G +V+L A DTFR+AA DQL+ W R A V G+D AA+A++A Sbjct: 373 TTGKLARVLISMGHRVVLGAADTFRAAAADQLETWGRRVGASTVRGAEGADPAAVAFDAV 432 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 K ++ DV+I+DTAGRLH ++ LM +GK+ RV+++ VL VLDAT GQN L Sbjct: 433 KTGVEEQADVVIVDTAGRLHTSTGLMDQLGKVKRVVEKK--SQVDEVLLVLDATVGQNGL 490 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q +F V TG+++TK+DGTA+GG + + +PV +G+GEG +DL PF + F Sbjct: 491 TQARVFKDVVEITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGF 550 Query: 307 SAVITGC 313 + G Sbjct: 551 VDALLGT 557 >gi|314923843|gb|EFS87674.1| signal recognition particle-docking protein FtsY [Propionibacterium acnes HL001PA1] Length = 390 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 104/268 (38%), Positives = 161/268 (60%), Gaps = 11/268 (4%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87 L G+ +++S+ +LDD ++ E LI SD+GV ++VE+L ++ +S Sbjct: 105 LARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDS---AH 161 Query: 88 VSELIHKMLMPLSKP-----FNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 E++H L+ L P N D +P V+L+VGVNG GKTT GKL++ + G Sbjct: 162 AREVLHHELVELVGPDMDRSINLDRPEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEGKT 221 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 V+L A DTFR+AA +QL+ W +R V + G+D A++AYEA + VDV+++DT Sbjct: 222 VLLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQAGIDDGVDVVLVDT 281 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AGRLH + LM +GK+ RV+++L P + VL VLDATTGQN L Q +F V TG+ Sbjct: 282 AGRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLTQACIFSEVVDVTGI 339 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++K+DG+A+GG ++ + +PV + Sbjct: 340 VLSKLDGSAKGGIVVQVQRELGVPVKLI 367 >gi|20092902|ref|NP_618977.1| signal recognition particle receptor [Methanosarcina acetivorans C2A] gi|19918211|gb|AAM07457.1| signal recognition particle receptor [Methanosarcina acetivorans C2A] Length = 417 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 92/264 (34%), Positives = 148/264 (56%), Gaps = 19/264 (7%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH----KMLMPLSKPF 103 ELE L+ SD+ ++V++ IVE + + + +R+ + E++ K ++ + Sbjct: 151 ELEMGLLESDLALSVSEAIVESVKNQLTG---TTKRIGSNTGEIVEAALKKAILEVVSAN 207 Query: 104 NWDFSH------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 +DF +P I+ VG+NG GKTT I K++ ++ +G V+LAAGDTFR+ AIDQ Sbjct: 208 TFDFDEYVKNREKPVHIVFVGINGTGKTTSISKITNRLLKSGYSVVLAAGDTFRAGAIDQ 267 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L I A+R + + G+D AA+ Y+A + A+A K+D ++ DTAGR+H N LMA + K Sbjct: 268 LGIHANRLGVKMIKHQAGADPAAVIYDAVQYAKAHKIDFVLSDTAGRMHTNMNLMAQMEK 327 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + RV P ++ V +A G +A+ + F+ G I+TK+D A+GG I Sbjct: 328 ICRV------STPDLIIFVDEAVAGNDAVERAAQFNEAVPIDGSILTKIDADAKGGAAIS 381 Query: 278 IVVTHKIPVYFLGVGEGINDLEPF 301 I P+ F G+G+G DL+ F Sbjct: 382 IAYITGKPILFFGIGQGYEDLKKF 405 >gi|313124889|ref|YP_004035153.1| signal recognition particle-docking protein ftsy [Halogeometricum borinquense DSM 11551] gi|312291254|gb|ADQ65714.1| signal recognition particle-docking protein FtsY [Halogeometricum borinquense DSM 11551] Length = 446 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 97/274 (35%), Positives = 152/274 (55%), Gaps = 14/274 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIH 93 II L+D + E LE L+ SD+ + VA++I++ + K + V+ + V E +H Sbjct: 166 IIEEEDLEDPLWE-LEMALLESDVEMHVAEEILDTIREKMVGETRRQVETMGQLVQEALH 224 Query: 94 KMLMPLSKPFNWDFSHR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 L + +DF R P ++ GVNGVGKTT I K+++ GL V+LA G Sbjct: 225 DALYDVISVGQFDFDQRIAEADKPVTLIFTGVNGVGKTTSIAKMARYFEKQGLSVVLANG 284 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DT+R+ A +Q++ A+ + E G D AA+ Y+A + A+A +DV++ DTAGRLH Sbjct: 285 DTYRAGANEQIRKHAENLDTKIISHEQGGDPAAVIYDAVEYAEAHDIDVVLGDTAGRLHT 344 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 ++ LMA + K+ RV++ P L V +A GQ+A+ + + F+ A G ++TK D Sbjct: 345 SNDLMAQLEKIDRVVE------PDLTLFVDEAVAGQDAVERAKQFNEAAEIDGAVLTKAD 398 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + GG I I P+ FLGVG+G +D+E F Sbjct: 399 ADSNGGAAISIAYVTGKPILFLGVGQGYDDIEQF 432 >gi|229258560|gb|ACQ45585.1| cell division protein FtsY [Vesicomya sp. endosymbiont] Length = 194 Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 82/191 (42%), Positives = 118/191 (61%), Gaps = 5/191 (2%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGKLSKKMS 136 ++ L D L + L+K F D + VILVVGVNG GKTT+IGKL+K Sbjct: 4 RKTLKDAESLYQFLKDELAKLFIKDNQLNTSINETFVILVVGVNGSGKTTLIGKLAKSFQ 63 Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196 D G VMLAAGDTFR+AAI+QL IW + V +G+D A++ ++A++ AQAK +D+ Sbjct: 64 DQGKSVMLAAGDTFRAAAIEQLIIWGRLNNIPVVAQTLGADTASVIFDAYQSAQAKNIDI 123 Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256 LI DTAGRLH LM +GK+ RV+ + + +APH + V+D +GQN + Q + F+ Sbjct: 124 LIADTAGRLHTQKNLMKELGKIKRVITKQNKNAPHETMLVIDGGSGQNVINQAKEFNKSL 183 Query: 257 GTTGLIMTKMD 267 + + +TK+D Sbjct: 184 TLSSISITKLD 194 >gi|14520718|ref|NP_126193.1| signal recognition particle receptor [Pyrococcus abyssi GE5] gi|5457934|emb|CAB49424.1| GTP-binding signal recognition particle receptor (SRP alpha, SRP54) [Pyrococcus abyssi GE5] Length = 322 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 97/259 (37%), Positives = 143/259 (55%), Gaps = 16/259 (6%) Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF------SHRPHV 113 A+ +KI E+L+ K+ ++++ D V E I ++L P P D S +P+V Sbjct: 69 ALKEKIKEKLVGKKVRIGTDKEKIIEDAVREAILEILTP---PRKIDLLEEIRKSEKPYV 125 Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 IL VG NG GKTT I KL+ + G V++AA DTFR+ AI+QL+ A R + Sbjct: 126 ILFVGFNGSGKTTTIAKLAHWLKKNGFSVVIAASDTFRAGAIEQLEEHAKRVGVKVIKHS 185 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 G+D AA+AY+A + A+A+ +DV++IDTAGR N LM + K+ RV K P+ V Sbjct: 186 YGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMRKIARVTK------PNLV 239 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 + V D+ G + Q F+ +I+TK+D ARGG + I P+ F+G+G+ Sbjct: 240 VFVGDSLAGNAIVEQARQFNDAVKIDAVILTKLDADARGGAALSISHVTNAPILFVGIGQ 299 Query: 294 GINDLEPFVAKDFSAVITG 312 G +DL PF K F I G Sbjct: 300 GYDDLMPFDEKWFVERILG 318 >gi|152965360|ref|YP_001361144.1| signal recognition particle-docking protein FtsY [Kineococcus radiotolerans SRS30216] gi|151359877|gb|ABS02880.1| signal recognition particle-docking protein FtsY [Kineococcus radiotolerans SRS30216] Length = 391 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 111/271 (40%), Positives = 164/271 (60%), Gaps = 8/271 (2%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMP 98 LD+ EE+E+ L+ +D+G +IV+ L + +L ++ EL+ + Sbjct: 118 LDEATWEEVEETLLLADVGFGPTTEIVDALRERVKVLGTREPALLREMLREELLRAVGTD 177 Query: 99 LSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 + + + RP VI+VVGVNG GKTT +GKL++ + V+L A DTFR+AA +Q Sbjct: 178 VDRTLRTTRHADRPAVIMVVGVNGTGKTTTVGKLARVLVAEDKDVVLGAADTFRAAAAEQ 237 Query: 158 LKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 L W DR V S+ G+D A++A++A KQ +VDV+I+DTAGRL N LM +G Sbjct: 238 LATWGDRVGVPTVRSDKDGADPASVAFDAVKQGIDDEVDVVIVDTAGRLQNKVGLMDELG 297 Query: 217 KMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 K+ RV++R H P VL VLDATTGQN LRQ +F V TG+++TK+DGTA+GG + Sbjct: 298 KVKRVVER---HGPVDEVLLVLDATTGQNGLRQAAVFSEVVDVTGIVLTKLDGTAKGGIV 354 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + + + +PV +G+GEG +DL PF + F Sbjct: 355 VAVQRSLDVPVKLIGLGEGPDDLAPFDPEAF 385 >gi|312148247|gb|ADQ30906.1| signal recognition particle-docking protein FtsY [Borrelia burgdorferi JD1] Length = 281 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 91/274 (33%), Positives = 167/274 (60%), Gaps = 9/274 (3%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 E I ++ S++ + V E LED+L+ SDI + +I+ +L TK K+ + + ++ + Sbjct: 5 EKIKNLFKSKQ-QENVIENLEDILLESDINNEIVIEIINKL-TKE--KNENEKTIIGKLK 60 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 EL+ + +K F + +++ +++L+VG+NG+GKT+ I KL+ K+ + G ++++A DT Sbjct: 61 ELLSSYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADT 117 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+AAI+Q+KI+ ++ + GSD +A+ +++ A+ K D LIIDTAGRL N Sbjct: 118 FRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQNKE 177 Query: 210 ILMAGIGKMIRV-LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 L+ + K+ V LK++ + + + V+D+T G+NA Q E+F+ G+I+TK+D Sbjct: 178 NLIKELQKINNVILKQIKNTDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITKLD 237 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +++ G ++ I + P+YF GE I D++ F Sbjct: 238 SSSKAGTILNISKILEKPIYFTTFGEKIEDIKEF 271 >gi|218249622|ref|YP_002374606.1| signal recognition particle-docking protein FtsY [Borrelia burgdorferi ZS7] gi|221217460|ref|ZP_03588931.1| signal recognition particle-docking protein FtsY [Borrelia burgdorferi 72a] gi|223889106|ref|ZP_03623695.1| signal recognition particle-docking protein FtsY [Borrelia burgdorferi 64b] gi|224533927|ref|ZP_03674512.1| signal recognition particle-docking protein FtsY [Borrelia burgdorferi CA-11.2a] gi|225549275|ref|ZP_03770248.1| signal recognition particle-docking protein FtsY [Borrelia burgdorferi 94a] gi|226320752|ref|ZP_03796308.1| signal recognition particle-docking protein FtsY [Borrelia burgdorferi 29805] gi|226322012|ref|ZP_03797537.1| signal recognition particle-docking protein FtsY [Borrelia burgdorferi Bol26] gi|218164810|gb|ACK74871.1| signal recognition particle-docking protein FtsY [Borrelia burgdorferi ZS7] gi|221192738|gb|EEE18954.1| signal recognition particle-docking protein FtsY [Borrelia burgdorferi 72a] gi|223885355|gb|EEF56456.1| signal recognition particle-docking protein FtsY [Borrelia burgdorferi 64b] gi|224512930|gb|EEF83296.1| signal recognition particle-docking protein FtsY [Borrelia burgdorferi CA-11.2a] gi|225370133|gb|EEG99573.1| signal recognition particle-docking protein FtsY [Borrelia burgdorferi 94a] gi|226232602|gb|EEH31356.1| signal recognition particle-docking protein FtsY [Borrelia burgdorferi Bol26] gi|226233807|gb|EEH32532.1| signal recognition particle-docking protein FtsY [Borrelia burgdorferi 29805] Length = 281 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 91/274 (33%), Positives = 167/274 (60%), Gaps = 9/274 (3%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 E I ++ S++ + V E LED+L+ SDI + +I+ +L TK K+ + + ++ + Sbjct: 5 EKIKNLFKSKQ-QENVIENLEDILLESDINNEIVIEIINKL-TKE--KNENEKTIIGKLK 60 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 EL+ + +K F + +++ +++L+VG+NG+GKT+ I KL+ K+ + G ++++A DT Sbjct: 61 ELLSSYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADT 117 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+AAI+Q+KI+ ++ + GSD +A+ +++ A+ K D LIIDTAGRL N Sbjct: 118 FRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQNKE 177 Query: 210 ILMAGIGKMIRV-LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 L+ + K+ V LK++ + + + V+D+T G+NA Q E+F+ G+I+TK+D Sbjct: 178 NLIKELQKINNVILKQIKNTDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITKLD 237 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +++ G +I I + P+YF GE + D++ F Sbjct: 238 SSSKAGTIINISKILEKPIYFTTFGEKLEDIKEF 271 >gi|326330603|ref|ZP_08196908.1| signal recognition particle-docking protein FtsY [Nocardioidaceae bacterium Broad-1] gi|325951593|gb|EGD43628.1| signal recognition particle-docking protein FtsY [Nocardioidaceae bacterium Broad-1] Length = 384 Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 113/294 (38%), Positives = 171/294 (58%), Gaps = 19/294 (6%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87 L G+ +++S+ +LD+ E +EDLL+ +DIGVA Q++VE L T+ + V+ D Sbjct: 101 LGRGLLNLLSTDQLDEDTWESIEDLLLTADIGVAPTQELVEGLRTR-----LRVEGGKAD 155 Query: 88 VSELIHKMLMPLSKPFNWDFSHR---------PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 + L+ L P R P V+L+VGVNG GKTT GKL++ + Sbjct: 156 PKAALRDELIKLVDP---GMDRRLQVSGADGAPGVVLMVGVNGTGKTTTTGKLARILVSE 212 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A DTFR+AA +QL W +R + V G+D A++A+++ K+ VD +I Sbjct: 213 DRKVVLGAADTFRAAAAEQLTTWGERVGVEVVRGPEGTDPASVAFDSVKEGLDTGVDTVI 272 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +DTAGRL N + LM +GK+ RV+++ P VL VLDATTGQN L Q +F Sbjct: 273 VDTAGRLQNKAGLMDELGKVKRVIEKQTPVT--EVLLVLDATTGQNGLIQARVFSEAVAV 330 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 TG+++TK+DG+A+GG ++ + +PV +G+GEG +DL PF + F + G Sbjct: 331 TGIVLTKLDGSAKGGIVVAVQRELGVPVKLVGLGEGPDDLTPFTPEAFVDALLG 384 >gi|116671040|ref|YP_831973.1| signal recognition particle-docking protein FtsY [Arthrobacter sp. FB24] gi|116611149|gb|ABK03873.1| signal recognition particle-docking protein FtsY [Arthrobacter sp. FB24] Length = 404 Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 120/287 (41%), Positives = 175/287 (60%), Gaps = 14/287 (4%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87 L +G+ ++SS ++D+ V +E+E+ L+ +D+G ++V+ L R V R Sbjct: 118 LGKGLLALLSSDKIDEDVWDEVEETLLLADLGTEPTMQLVDAL---RERVKVLGTRTPEQ 174 Query: 88 VSELIHKMLMPLSKPFNWDFSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140 V L+ + L+ L P D S R P V++VVGVNGVGKTT +GKL++ + Sbjct: 175 VKALLREELIKLVDP-TMDRSLRTDRHADKPAVMMVVGVNGVGKTTTVGKLARVLVAEDK 233 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLII 199 V+L A DTFR+AA +QL W R V S++ G+D A++AYEA K ++VDV++I Sbjct: 234 DVLLGAADTFRAAAAEQLATWGQRVGVPTVKSDVDGADPASVAYEAVKSGIDQEVDVVMI 293 Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 DTAGRL N LM +GK+ RV+++L VL VLDATTGQN L Q +F V T Sbjct: 294 DTAGRLQNKVGLMDELGKVKRVIEKL--AEVDEVLLVLDATTGQNGLNQARVFSEVVNIT 351 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G+++TK+DGTA+GG ++ I T +PV +G+GEG +DL PF A+ F Sbjct: 352 GIVLTKLDGTAKGGIVVAIQKTLGVPVKLIGLGEGADDLAPFDAESF 398 >gi|15610058|ref|NP_217437.1| cell division protein FtsY [Mycobacterium tuberculosis H37Rv] gi|15842465|ref|NP_337502.1| signal recognition particle FtsY [Mycobacterium tuberculosis CDC1551] gi|31794097|ref|NP_856590.1| cell division protein FtsY [Mycobacterium bovis AF2122/97] gi|121638802|ref|YP_979026.1| putative cell division protein ftsY [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662765|ref|YP_001284288.1| signal recognition particle FtsY [Mycobacterium tuberculosis H37Ra] gi|148824110|ref|YP_001288864.1| cell division protein ftsY [Mycobacterium tuberculosis F11] gi|215404896|ref|ZP_03417077.1| cell division protein ftsY [Mycobacterium tuberculosis 02_1987] gi|215412763|ref|ZP_03421475.1| cell division protein ftsY [Mycobacterium tuberculosis 94_M4241A] gi|215428363|ref|ZP_03426282.1| cell division protein ftsY [Mycobacterium tuberculosis T92] gi|224991294|ref|YP_002645983.1| putative cell division protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253797991|ref|YP_003030992.1| cell division protein ftsY [Mycobacterium tuberculosis KZN 1435] gi|254233011|ref|ZP_04926338.1| cell division protein ftsY [Mycobacterium tuberculosis C] gi|260187940|ref|ZP_05765414.1| cell division protein ftsY [Mycobacterium tuberculosis CPHL_A] gi|260202056|ref|ZP_05769547.1| cell division protein ftsY [Mycobacterium tuberculosis T46] gi|260206240|ref|ZP_05773731.1| cell division protein ftsY [Mycobacterium tuberculosis K85] gi|289444476|ref|ZP_06434220.1| cell division protein ftsY [Mycobacterium tuberculosis T46] gi|289448586|ref|ZP_06438330.1| cell division protein ftsY [Mycobacterium tuberculosis CPHL_A] gi|289553290|ref|ZP_06442500.1| cell division protein ftsY [Mycobacterium tuberculosis KZN 605] gi|289575626|ref|ZP_06455853.1| cell division protein ftsY [Mycobacterium tuberculosis K85] gi|289746720|ref|ZP_06506098.1| cell division protein FtsY [Mycobacterium tuberculosis 02_1987] gi|289751587|ref|ZP_06510965.1| cell division protein ftsY [Mycobacterium tuberculosis T92] gi|294993982|ref|ZP_06799673.1| cell division protein ftsY [Mycobacterium tuberculosis 210] gi|297635540|ref|ZP_06953320.1| cell division protein ftsY [Mycobacterium tuberculosis KZN 4207] gi|297732539|ref|ZP_06961657.1| cell division protein ftsY [Mycobacterium tuberculosis KZN R506] gi|298526390|ref|ZP_07013799.1| cell division protein ftsY [Mycobacterium tuberculosis 94_M4241A] gi|306777211|ref|ZP_07415548.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu001] gi|306781118|ref|ZP_07419455.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu002] gi|306785757|ref|ZP_07424079.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu003] gi|306789797|ref|ZP_07428119.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu004] gi|306794610|ref|ZP_07432912.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu005] gi|306798854|ref|ZP_07437156.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu006] gi|306804699|ref|ZP_07441367.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu008] gi|306808892|ref|ZP_07445560.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu007] gi|306968991|ref|ZP_07481652.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu009] gi|306973328|ref|ZP_07485989.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu010] gi|307081034|ref|ZP_07490204.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu011] gi|307085633|ref|ZP_07494746.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu012] gi|313659871|ref|ZP_07816751.1| signal recognition particle-docking protein FtsY [Mycobacterium tuberculosis KZN V2475] gi|54037143|sp|P66843|FTSY_MYCBO RecName: Full=Cell division protein ftsY homolog gi|54041037|sp|P66842|FTSY_MYCTU RecName: Full=Cell division protein ftsY homolog gi|1405957|emb|CAA98981.1| PROBABLE CELL DIVISION PROTEIN FTSY (SRP RECEPTOR) (SIGNAL RECOGNITION PARTICLE RECEPTOR) [Mycobacterium tuberculosis H37Rv] gi|13882770|gb|AAK47316.1| signal recognition particle FtsY [Mycobacterium tuberculosis CDC1551] gi|31619692|emb|CAD96632.1| PROBABLE CELL DIVISION PROTEIN FTSY [Mycobacterium bovis AF2122/97] gi|121494450|emb|CAL72931.1| Probable cell division protein ftsY [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124602070|gb|EAY61080.1| cell division protein ftsY [Mycobacterium tuberculosis C] gi|148506917|gb|ABQ74726.1| signal recognition particle FtsY [Mycobacterium tuberculosis H37Ra] gi|148722637|gb|ABR07262.1| cell division protein ftsY [Mycobacterium tuberculosis F11] gi|224774409|dbj|BAH27215.1| putative cell division protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253319494|gb|ACT24097.1| cell division protein ftsY [Mycobacterium tuberculosis KZN 1435] gi|289417395|gb|EFD14635.1| cell division protein ftsY [Mycobacterium tuberculosis T46] gi|289421544|gb|EFD18745.1| cell division protein ftsY [Mycobacterium tuberculosis CPHL_A] gi|289437922|gb|EFD20415.1| cell division protein ftsY [Mycobacterium tuberculosis KZN 605] gi|289540057|gb|EFD44635.1| cell division protein ftsY [Mycobacterium tuberculosis K85] gi|289687248|gb|EFD54736.1| cell division protein FtsY [Mycobacterium tuberculosis 02_1987] gi|289692174|gb|EFD59603.1| cell division protein ftsY [Mycobacterium tuberculosis T92] gi|298496184|gb|EFI31478.1| cell division protein ftsY [Mycobacterium tuberculosis 94_M4241A] gi|308214420|gb|EFO73819.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu001] gi|308326065|gb|EFP14916.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu002] gi|308329537|gb|EFP18388.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu003] gi|308333730|gb|EFP22581.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu004] gi|308337087|gb|EFP25938.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu005] gi|308340899|gb|EFP29750.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu006] gi|308344736|gb|EFP33587.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu007] gi|308348716|gb|EFP37567.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu008] gi|308353412|gb|EFP42263.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu009] gi|308357231|gb|EFP46082.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu010] gi|308361240|gb|EFP50091.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu011] gi|308364860|gb|EFP53711.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu012] gi|323718532|gb|EGB27703.1| cell division protein ftsY [Mycobacterium tuberculosis CDC1551A] gi|326904535|gb|EGE51468.1| cell division protein ftsY [Mycobacterium tuberculosis W-148] gi|328457765|gb|AEB03188.1| cell division protein ftsY [Mycobacterium tuberculosis KZN 4207] Length = 422 Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 106/271 (39%), Positives = 159/271 (58%), Gaps = 9/271 (3%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLMPLSKP 102 +++ED L+ +D+G A +V +L ++ + +V + VL DV LI+++ + + Sbjct: 156 QDVEDTLLVADLGPAATASVVSQLRSRLASGNVRTEADARAVLRDV--LINELQPGMDRS 213 Query: 103 FN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 + P V+LVVGVNG GKTT +GKL++ + G +V+L A DTFR+AA DQL+ W Sbjct: 214 IRALPHAGHPSVLLVVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQTW 273 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 A R A V G+D A++A++A + A DV++IDTAGRLH LM + K+ RV Sbjct: 274 AARVGAAVVRGPEGADPASVAFDAVDKGIAAGADVVLIDTAGRLHTKVGLMDELDKVKRV 333 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 + R + VL VLDAT GQN L Q +F V +G ++TK+DGTA+GG + + Sbjct: 334 VTRR--ASVDEVLLVLDATIGQNGLAQARVFAEVVDISGAVLTKLDGTAKGGIVFRVQQE 391 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +PV +G+GEG +DL PF F + G Sbjct: 392 LGVPVKLVGLGEGPDDLAPFEPAAFVDALLG 422 >gi|18978138|ref|NP_579495.1| signal recognition particle receptor [Pyrococcus furiosus DSM 3638] gi|18893939|gb|AAL81890.1| signal recognition particle receptor (dpa) [Pyrococcus furiosus DSM 3638] Length = 322 Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 96/271 (35%), Positives = 149/271 (54%), Gaps = 21/271 (7%) Query: 43 DGVREELEDLLIRSDIGVAVAQ-KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101 D +RE+++ L+ + + + KI+EE + + ++ + R + D+ E I K Sbjct: 68 DALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRI-DLIEEIRK------- 119 Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 + +P+VI+ VG NG GKTT I KL+ + + G V++AA DTFR+ AI+QL+ Sbjct: 120 ------AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEH 173 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 A R + G+D AA+AY+A + A+A+ +DV++IDTAGR N LM + K+ RV Sbjct: 174 AKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARV 233 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 K P+ V+ V DA G + Q F+ G+I+TK+D ARGG + I Sbjct: 234 TK------PNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYV 287 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 P+ F+GVG+G +DL PF + F I G Sbjct: 288 IDAPILFVGVGQGYDDLRPFEKEWFLERIFG 318 >gi|124486291|ref|YP_001030907.1| signal recognition particle-docking protein FtsY [Methanocorpusculum labreanum Z] gi|124363832|gb|ABN07640.1| signal recognition particle-docking protein FtsY [Methanocorpusculum labreanum Z] Length = 337 Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 92/263 (34%), Positives = 144/263 (54%), Gaps = 18/263 (6%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLT---------KRYAKDVSVQRVLYDVSELIHKMLMP 98 EL+ +L+ SD+ VA+ I E + + A DV + + + E++ + Sbjct: 71 ELQMVLLESDVAYPVAEAITEHMKKELVGTHRKLRESADDVVTNALRHAIEEVLGEGFDL 130 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +S D RP IL GVNG GKTT + K++ + GL V++ AGDTFR+ AI+Q+ Sbjct: 131 VSYVRTHD---RPVKILFTGVNGTGKTTSVAKIAHYLQSQGLSVVVGAGDTFRAGAIEQI 187 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++ DR + + G+D +A+ Y+ + A+A K DV++ D+AGR HN LM + K+ Sbjct: 188 RVHCDRLGIKLIAHQEGADPSAVLYDTVEYAKAHKTDVVLADSAGRFHNRVNLMNQLEKI 247 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 RV+K P V V +A G +A+ + E F T G+I+TK+D +GG I I Sbjct: 248 KRVMK------PDLVFYVDEAVAGNDAVIRAEEFEKTVSTDGVILTKVDMDPKGGAAISI 301 Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301 T P+ FLGVG+G +D++PF Sbjct: 302 AYTIGKPLVFLGVGQGYDDMKPF 324 >gi|119960685|ref|YP_948189.1| signal recognition particle-docking protein FtsY [Arthrobacter aurescens TC1] gi|119947544|gb|ABM06455.1| signal recognition particle-docking protein FtsY [Arthrobacter aurescens TC1] Length = 401 Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 119/287 (41%), Positives = 176/287 (61%), Gaps = 14/287 (4%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87 L +G+ ++S ++D+ V +E+E+ L+ +D+G ++V+ L R V R D Sbjct: 115 LGKGLLALLSGDKIDENVWDEVEETLLLADLGTEPTMQLVDAL---RERVKVLGTRSPED 171 Query: 88 VSELIHKMLMPLSKPFNWDFS-------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140 V ++ + L+ L P D S RP V+LVVGVNGVGKTT +GKL++ + Sbjct: 172 VKAMLREELIKLVDP-GMDRSLNVERKGDRPAVVLVVGVNGVGKTTTVGKLARVLVAEDK 230 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLII 199 V+L A DTFR+AA +QL W R V S+I G+D A++AYEA K ++VDV+++ Sbjct: 231 DVLLGAADTFRAAAAEQLATWGQRVGVPTVKSDIDGADPASVAYEAVKAGIDQEVDVVMV 290 Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 DTAGRL N + LM +GK+ RV+++L VL VLDATTGQN L Q +F V T Sbjct: 291 DTAGRLQNKTGLMDELGKVKRVIEKL--AEVDEVLLVLDATTGQNGLNQARVFAEVVNIT 348 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G+++TK+DGTA+GG ++ I + +PV +G+GEG +DL PF A+ F Sbjct: 349 GIVLTKLDGTAKGGIVVAIQKSLGVPVKLIGLGEGPDDLAPFDAESF 395 >gi|212374986|pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal Recognition Particle Receptor From The Archaeon Pyrococcus Furiosus gi|212374987|pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal Recognition Particle Receptor From The Archaeon Pyrococcus Furiosus gi|212374988|pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal Recognition Particle Receptor From The Archaeon Pyrococcus Furiosus gi|213424254|pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal Recognition Particle Receptor From The Archaeon Pyrococcus Furiosus Length = 328 Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 96/271 (35%), Positives = 149/271 (54%), Gaps = 21/271 (7%) Query: 43 DGVREELEDLLIRSDIGVAVAQ-KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101 D +RE+++ L+ + + + KI+EE + + ++ + R + D+ E I K Sbjct: 74 DALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRI-DLIEEIRK------- 125 Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 + +P+VI+ VG NG GKTT I KL+ + + G V++AA DTFR+ AI+QL+ Sbjct: 126 ------AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEH 179 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 A R + G+D AA+AY+A + A+A+ +DV++IDTAGR N LM + K+ RV Sbjct: 180 AKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARV 239 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 K P+ V+ V DA G + Q F+ G+I+TK+D ARGG + I Sbjct: 240 TK------PNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYV 293 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 P+ F+GVG+G +DL PF + F I G Sbjct: 294 IDAPILFVGVGQGYDDLRPFEKEWFLERIFG 324 >gi|297191803|ref|ZP_06909201.1| signal recognition particle [Streptomyces pristinaespiralis ATCC 25486] gi|297151075|gb|EFH30947.1| signal recognition particle [Streptomyces pristinaespiralis ATCC 25486] Length = 407 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 116/303 (38%), Positives = 177/303 (58%), Gaps = 11/303 (3%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L A + L +G+ ++S LD+ EE+ED L+ +D+GVA Q++VE L + Sbjct: 109 RLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVAPTQELVERL--RER 166 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGK 130 K + + + L ++L+ + F+ P V++VVGVNG GKTT GK Sbjct: 167 VKVLGTRTPEQLRTLLREELLLLVGTEFDRAVKTESGLETPAVVMVVGVNGTGKTTTTGK 226 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L++ + G V+L A DTFR+AA DQL+ W +R A V D A++A+++ K+ Sbjct: 227 LARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEAGDPASVAFDSVKEGI 286 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249 A+ DV++IDTAGRLH + LM +GK+ RV+++ H P VL VLDATTGQN L Q Sbjct: 287 AEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HGPLDEVLLVLDATTGQNGLVQA 343 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 +F V TG+++TK+DGTA+GG ++ + +PV +G+GEG +DL PF + F Sbjct: 344 RVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGPDDLAPFEPEAFVDA 403 Query: 310 ITG 312 + G Sbjct: 404 LIG 406 >gi|172040474|ref|YP_001800188.1| signal recognition particle receptor [Corynebacterium urealyticum DSM 7109] gi|171851778|emb|CAQ04754.1| signal recognition particle receptor [Corynebacterium urealyticum DSM 7109] Length = 554 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 114/306 (37%), Positives = 176/306 (57%), Gaps = 17/306 (5%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 KL A + + G+ I+S+ LD+ EE+ED L+ +D+G K+V+ L + Sbjct: 257 KLRGRMAKSQNVIGRGVLGILSAGDLDEDAWEEIEDTLLMADLGADTTMKVVDSLRERIA 316 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPF------NWDFSHRPHVILVVGVNGVGKTTVIG 129 ++ V + ++ ++L+ KP + +P VI+VVGVNG GKTT G Sbjct: 317 SQGVESEE---QARAMLREVLIEAGKPELDRSIKAMPYKGKPGVIMVVGVNGTGKTTTTG 373 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KLS+ + G V+L A DTFR+AA DQL+ W +R A V + G+D A++A+++ Q Sbjct: 374 KLSRVLVGMGKHVVLGAADTFRAAAADQLETWGNRVGARTVRGKEGADPASVAFDSVSQG 433 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK---RLDPHAPHSVLQVLDATTGQNAL 246 ++ DV+++DTAGRLH + LM +GK+ RV++ R+D VL VLDAT GQN L Sbjct: 434 MDEQADVVLVDTAGRLHTSVGLMDQLGKVKRVVEKRARVD-----EVLLVLDATVGQNGL 488 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q +F V TG+++TK+DGTA+GG + + +PV +G+GEG +DL PF + F Sbjct: 489 MQARVFRDVVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVESF 548 Query: 307 SAVITG 312 + G Sbjct: 549 VDALLG 554 >gi|224533025|ref|ZP_03673631.1| signal recognition particle-docking protein FtsY [Borrelia burgdorferi WI91-23] gi|224512019|gb|EEF82414.1| signal recognition particle-docking protein FtsY [Borrelia burgdorferi WI91-23] Length = 281 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 90/274 (32%), Positives = 167/274 (60%), Gaps = 9/274 (3%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 E I ++ S++ + V E LED+L+ SDI + +I+ +L TK K+ + + ++ + Sbjct: 5 EKIKNLFKSKQ-QENVIENLEDILLESDINNEIVIEIINKL-TKE--KNENEKTIIGKLK 60 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 EL+ + +K F + +++ +++L+VG+NG+GKT+ I KL+ K+ + G ++++A DT Sbjct: 61 ELLSSYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADT 117 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+AAI+Q+KI+ ++ + GSD +A+ +++ A+ K D LIIDTAGRL N Sbjct: 118 FRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQNKE 177 Query: 210 ILMAGIGKMIRV-LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 L+ + K+ V LK++ + + + V+D+T G+NA Q E+F+ G+I+TK+D Sbjct: 178 NLIKELQKINNVILKQIKNSDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITKLD 237 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +++ G ++ I + P+YF GE + D++ F Sbjct: 238 SSSKAGTILNISKILEKPIYFTTFGEKLEDIKEF 271 >gi|15594422|ref|NP_212210.1| cell division protein, putative [Borrelia burgdorferi B31] gi|2687952|gb|AAC66458.1| cell division protein, putative [Borrelia burgdorferi B31] Length = 281 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 90/274 (32%), Positives = 167/274 (60%), Gaps = 9/274 (3%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 E I ++ S++ + V E LED+L+ SDI + +I+ +L TK K+ + + ++ + Sbjct: 5 EKIKNLFKSKQ-QENVIENLEDILLESDINNEIVIEIINKL-TKE--KNENEKTIIGKLK 60 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 EL+ + +K F + +++ +++L+VG+NG+GKT+ I KL+ K+ + G ++++A DT Sbjct: 61 ELLSSYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADT 117 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+AAI+Q+KI+ ++ + GSD +A+ +++ A+ K D LIIDTAGRL N Sbjct: 118 FRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQNKE 177 Query: 210 ILMAGIGKMIRV-LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 L+ + K+ V LK++ + + + V+D+T G+NA Q E+F+ G+I+TK+D Sbjct: 178 NLIKELQKINNVILKQIKNTDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITKLD 237 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +++ G ++ I + P+YF GE + D++ F Sbjct: 238 SSSKAGTILNISKILEKPIYFTTFGEKLEDIKEF 271 >gi|302554416|ref|ZP_07306758.1| signal recognition particle-docking protein FtsY [Streptomyces viridochromogenes DSM 40736] gi|302472034|gb|EFL35127.1| signal recognition particle-docking protein FtsY [Streptomyces viridochromogenes DSM 40736] Length = 411 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 115/304 (37%), Positives = 176/304 (57%), Gaps = 13/304 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L + + L +G+ ++S LD+ EE+ED L+ +D+GV Q++VE L R Sbjct: 113 RLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVQPTQELVERL---RE 169 Query: 76 AKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129 V R ++ L+ + L+ L + + R P +++VVGVNG GKTT G Sbjct: 170 RVKVLGTRTPEELRTLLREELVTLVGRDMDRTVKTEPEGRGPGIVMVVGVNGTGKTTTTG 229 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL++ + G V+L A DTFR+AA DQL+ W +R A V D A++A++A K+ Sbjct: 230 KLARVLVADGQSVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEAGDPASVAFDAVKEG 289 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQ 248 + +V++IDTAGRLH + LM +GK+ RV+++ AP VL VLDATTGQN L Q Sbjct: 290 KETGANVVLIDTAGRLHTKTGLMDELGKVKRVVEK---QAPVDEVLLVLDATTGQNGLVQ 346 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 +F V TG+++TK+DGTA+GG ++ + +PV +G+GEG +DL PF + F Sbjct: 347 ARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGADDLAPFEPEAFVD 406 Query: 309 VITG 312 + G Sbjct: 407 ALIG 410 >gi|312136391|ref|YP_004003728.1| signal recognition particle-docking protein ftsy [Methanothermus fervidus DSM 2088] gi|311224110|gb|ADP76966.1| signal recognition particle-docking protein FtsY [Methanothermus fervidus DSM 2088] Length = 321 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 105/306 (34%), Positives = 163/306 (53%), Gaps = 26/306 (8%) Query: 14 IRKLTKGFASTSL---KLKEGITDIISSRRLDDGVREELEDLLIRS-------DIGVAVA 63 ++K+TK + + K++E + I S + +++ED+L D+ + VA Sbjct: 13 VKKITKSVSKKEIEKGKVEENKSGIFSFIKEKTISEDDIEDVLWELQLELLEGDVALEVA 72 Query: 64 QKIVE----ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVIL 115 +KI E EL+ K+ + + + Y + L + +L L N + +P VIL Sbjct: 73 EKITESVKKELVGKKVKRSTDIDK--YTRNALKNAILEILKTDSNVEDLLKIKKKPFVIL 130 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VGVNG GKTT I KL+K + GL ++AA DTFR+ AI+Q+ ++ + + G Sbjct: 131 FVGVNGTGKTTTIAKLAKYFMEKGLVPVIAAADTFRAGAIEQITKHGEKLGVKVIKHKKG 190 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 SD AA+AY+A A++K DV++IDTAGR+ N LM + K+ RV+ P ++ Sbjct: 191 SDPAAVAYDAVNHAKSKNKDVVLIDTAGRMQTNMNLMEEMAKIKRVVN------PDFIIF 244 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V DA TG +A+ Q +MF G G+I+TK D RGG I I P+ FLG+G+ Sbjct: 245 VGDALTGNDAVEQAKMFDEKIGIDGVILTKADADTRGGAAISISYVIGKPILFLGIGQNY 304 Query: 296 NDLEPF 301 +DL F Sbjct: 305 DDLIEF 310 >gi|216264142|ref|ZP_03436134.1| signal recognition particle-docking protein FtsY [Borrelia burgdorferi 156a] gi|225549704|ref|ZP_03770669.1| signal recognition particle-docking protein FtsY [Borrelia burgdorferi 118a] gi|215980615|gb|EEC21422.1| signal recognition particle-docking protein FtsY [Borrelia burgdorferi 156a] gi|225369664|gb|EEG99112.1| signal recognition particle-docking protein FtsY [Borrelia burgdorferi 118a] gi|312149544|gb|ADQ29615.1| signal recognition particle-docking protein FtsY [Borrelia burgdorferi N40] Length = 281 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 91/274 (33%), Positives = 166/274 (60%), Gaps = 9/274 (3%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 E I ++ S++ + V E LED+L+ SDI + +I+ +L TK K+ + + ++ + Sbjct: 5 EKIKNLFKSKQ-QENVIENLEDILLESDINNEIVIEIINKL-TKE--KNENEKTIIGKLK 60 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 EL+ + +K F + +++ +++L+VG+NG+GKT+ I KL+ K+ + G ++++A DT Sbjct: 61 ELLSSYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADT 117 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+AAI+Q+KI+ ++ + GSD +A+ +++ A+ K D LIIDTAGRL N Sbjct: 118 FRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQNKE 177 Query: 210 ILMAGIGKMIRV-LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 L+ + K+ V LK++ + + + V+D+T G+NA Q E+F+ G I+TK+D Sbjct: 178 NLIKELQKINNVILKQIKNTDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGTIITKLD 237 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +++ G ++ I + P+YF GE I D++ F Sbjct: 238 SSSKAGTILNISKILEKPIYFTTFGEKIEDIKEF 271 >gi|257387285|ref|YP_003177058.1| signal recognition particle-docking protein FtsY [Halomicrobium mukohataei DSM 12286] gi|257169592|gb|ACV47351.1| signal recognition particle-docking protein FtsY [Halomicrobium mukohataei DSM 12286] Length = 367 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 103/276 (37%), Positives = 148/276 (53%), Gaps = 18/276 (6%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKI---VEELLTKRYAKDVSVQRVLYDVSEL 91 II L D + ++LE L+ SD+ + VA +I VEE L + +S L V + Sbjct: 89 IIDEEDLQDHL-DDLELALLSSDVEMGVAGEILSGVEENLVGETRRRLSSTGNL--VRDA 145 Query: 92 IHKMLMPLSKPFNWDFSHR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 + + L + +DF R P VI+ GVNGVGKTT I KLS+++ GL +LA Sbjct: 146 LRESLYDVISVGQFDFEQRIRAADKPVVIIFTGVNGVGKTTTIAKLSERLEGQGLSTVLA 205 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 GDT+R+ A +QL+ AD + E GSD AA+ Y+A + A+A DV++ DTAGRL Sbjct: 206 NGDTYRAGANEQLQKHADNLDRTLISHEQGSDPAAVIYDAVEYAEANDTDVVLGDTAGRL 265 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 H + LMA + K+ RV+ P + V +A GQ+A+ + F A G ++TK Sbjct: 266 HTSDDLMAQLEKIDRVID------PDMTIFVDEAVAGQDAVNRAREFDEAAEIDGAVLTK 319 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 D +GG I I P+ FLG G+G +DLE F Sbjct: 320 ADADPQGGAAISIAHVTGKPILFLGTGQGYDDLERF 355 >gi|291448070|ref|ZP_06587460.1| signal recognition particle receptor FtsY [Streptomyces roseosporus NRRL 15998] gi|291351017|gb|EFE77921.1| signal recognition particle receptor FtsY [Streptomyces roseosporus NRRL 15998] Length = 411 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 125/315 (39%), Positives = 184/315 (58%), Gaps = 13/315 (4%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V + + +L A + L +G+ ++S LD+ EE+ED L+ +D+GVA Q Sbjct: 102 EVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQ 161 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDF-----SHRPHVILVVG 118 ++VE L R V R ++ L+ + L+ L P F+ + + P V++VVG Sbjct: 162 ELVERL---RERVRVLGTRTPEELRTLLREELITLLGPDFDREVKTEGGAETPGVVMVVG 218 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNG GKTT GKL++ + G V+L A DTFR+AA DQL+ W +R A V G D Sbjct: 219 VNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDP 278 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237 A++AY+A K+ A+ DV++IDTAGRLH + LM +GK+ RV+++ H P VL VL Sbjct: 279 ASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HGPLDEVLLVL 335 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DATTGQN L Q +F V TG+++TK+DGTA+GG +I + +PV +G+GEG +D Sbjct: 336 DATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGPDD 395 Query: 298 LEPFVAKDFSAVITG 312 L PF F + G Sbjct: 396 LAPFEPGAFVDALIG 410 >gi|73668009|ref|YP_304024.1| signal recognition particle-docking protein FtsY [Methanosarcina barkeri str. Fusaro] gi|72395171|gb|AAZ69444.1| signal recognition particle-docking protein FtsY [Methanosarcina barkeri str. Fusaro] Length = 422 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 94/276 (34%), Positives = 154/276 (55%), Gaps = 20/276 (7%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH-- 93 + S+ LD+ + E LE L+ SD+ ++V++ IVE + T+ + +R+ + E++ Sbjct: 140 LDSKDLDEPLWE-LEMGLLESDLALSVSEAIVESVKTQLTG---TTKRIGSNTGEIVEEA 195 Query: 94 --KMLMPLSKPFNWDFSH------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 K ++ + +DF +P I+ VG+NG GKTT I K++ ++ + V+LA Sbjct: 196 LKKAILEVVSANTFDFDEYVRDREKPVHIVFVGINGTGKTTSIAKITHRLLKSDYSVVLA 255 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 AGDTFR+ AIDQL I ADR + + G+D AA+ Y+A + A+ K+D ++ DTAGR+ Sbjct: 256 AGDTFRAGAIDQLGIHADRLGVKMIKHQPGADPAAVIYDAVQYAKGHKIDFVLSDTAGRM 315 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 H N LM+ + K+ RV P ++ V +A G +A+ + F+ G I+TK Sbjct: 316 HTNLNLMSQMEKICRV------STPDLIIFVDEAVAGNDAVERAAQFNEAVPIDGSILTK 369 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +D A+GG I I P+ F G+G+G DL+ F Sbjct: 370 IDADAKGGAAISIAYITGKPILFFGIGQGYEDLKKF 405 >gi|312194947|ref|YP_004015008.1| signal recognition particle-docking protein FtsY [Frankia sp. EuI1c] gi|311226283|gb|ADP79138.1| signal recognition particle-docking protein FtsY [Frankia sp. EuI1c] Length = 400 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 114/309 (36%), Positives = 168/309 (54%), Gaps = 12/309 (3%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 +V + S + +L A + G+ ++S L D +++E L+ +D+GV Sbjct: 88 HEVPAPSAGRLVRLRARLARSQSSFGRGLLALLSGDDLTDEDWDDVESTLLLADVGVTAT 147 Query: 64 QKIVEEL------LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117 ++V L L R DV + +L D EL+ ++ + RP V+LVV Sbjct: 148 SELVAALKERTAVLGARSWSDV--RDMLRD--ELLAQIGTTADRSLRTAADGRPGVLLVV 203 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 GVNG GKTT GK+++ + G V+L A DTFR+AA DQL+ W R A V G D Sbjct: 204 GVNGTGKTTTCGKIARLLVADGKSVVLGAADTFRAAAADQLETWGGRVGAVTVRGAEGGD 263 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 A++A++A K+ A D ++IDTAGRLH LM + K+ RV+ + P V+ VL Sbjct: 264 PASVAFDAVKRGIADGADAVVIDTAGRLHTKVGLMDELSKIKRVVTKQSPV--DEVILVL 321 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DATTGQNAL Q +F TG+ +TK+DGTA+GG +I + +PV +G+GEG +D Sbjct: 322 DATTGQNALVQARVFTEAVDITGVALTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGPDD 381 Query: 298 LEPFVAKDF 306 L PF + F Sbjct: 382 LAPFEPEGF 390 >gi|300871820|ref|YP_003786693.1| signal recognition particle receptor FtsY [Brachyspira pilosicoli 95/1000] gi|300689521|gb|ADK32192.1| signal recognition particle receptor, FtsY [Brachyspira pilosicoli 95/1000] Length = 319 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/268 (33%), Positives = 147/268 (54%), Gaps = 9/268 (3%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI-HKMLMPL 99 ++D LE++LI +D GV + I+ +L +D+ + + D SE+ H + + Sbjct: 53 INDEFFASLENMLITADAGVETTKDIISKL------RDIVEKENIKDSSEVKKHLREILI 106 Query: 100 SKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 SK N +++ +VGVNGVGKTT I KL+ + K++LAA DTFR+AAI+QL Sbjct: 107 SKFINKKIELKEKNILFIVGVNGVGKTTSIAKLANILKQDH-KIILAASDTFRAAAIEQL 165 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 + WA+R S V + D A++ + A +A+A D++I+DTAGR HN L+ + KM Sbjct: 166 EEWANRLSVTIVKGQQAGDPASVLFSALDKAKATNADIVIVDTAGRFHNQDNLVKQLEKM 225 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 ++ + VLDA G N + Q ++F G I++K+D +A+GG I + Sbjct: 226 KKIATERFSEFNFVPILVLDANVGHNGIEQAKVFTNALNIQGAIVSKLDSSAKGGVAISV 285 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +P+Y+ G GE + D F A++F Sbjct: 286 AHYLSLPIYYGGFGEKVEDFREFNAEEF 313 >gi|239944607|ref|ZP_04696544.1| putative signal recognition particle-docking protein FtsY [Streptomyces roseosporus NRRL 15998] gi|239991070|ref|ZP_04711734.1| putative signal recognition particle-docking protein FtsY [Streptomyces roseosporus NRRL 11379] Length = 404 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 125/315 (39%), Positives = 184/315 (58%), Gaps = 13/315 (4%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V + + +L A + L +G+ ++S LD+ EE+ED L+ +D+GVA Q Sbjct: 95 EVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQ 154 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDF-----SHRPHVILVVG 118 ++VE L R V R ++ L+ + L+ L P F+ + + P V++VVG Sbjct: 155 ELVERL---RERVRVLGTRTPEELRTLLREELITLLGPDFDREVKTEGGAETPGVVMVVG 211 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNG GKTT GKL++ + G V+L A DTFR+AA DQL+ W +R A V G D Sbjct: 212 VNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDP 271 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237 A++AY+A K+ A+ DV++IDTAGRLH + LM +GK+ RV+++ H P VL VL Sbjct: 272 ASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HGPLDEVLLVL 328 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DATTGQN L Q +F V TG+++TK+DGTA+GG +I + +PV +G+GEG +D Sbjct: 329 DATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGPDD 388 Query: 298 LEPFVAKDFSAVITG 312 L PF F + G Sbjct: 389 LAPFEPGAFVDALIG 403 >gi|305663810|ref|YP_003860098.1| signal recognition particle-docking protein FtsY [Ignisphaera aggregans DSM 17230] gi|304378379|gb|ADM28218.1| signal recognition particle-docking protein FtsY [Ignisphaera aggregans DSM 17230] Length = 306 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 99/307 (32%), Positives = 172/307 (56%), Gaps = 32/307 (10%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 QK+ + +++++++ +L K+ SR D+ + E LI SD+ VA Sbjct: 3 QKIRNAVQNFVKQISDAIRYKTLDEKD------ISRYCDNLLNE-----LIESDVAYDVA 51 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-----LSKPFNWDF-------SHRP 111 +KIV ++ + +++ + R +V E I+ +++ L ++DF S +P Sbjct: 52 EKIVTDIGNR--LREIKIPRGT-NVEEYINNIVIDVLRKLLDNATSYDFIEYIAKSSEKP 108 Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 I+ +G+NGVGKTT I K++ + AG+K ++ A DTFR+ A +QLK ++R F+ Sbjct: 109 VKIVFMGINGVGKTTTIAKVAYMLKKAGVKPVIVAADTFRAGAQEQLKKHSERLGIPFIG 168 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 + G+D AA+A++ A + DV++IDTAGR+H + LM + K+I+V+K PH Sbjct: 169 GKYGADPAAVAFDGIVFASKNRFDVVLIDTAGRMHIDVDLMNELKKVIKVVK------PH 222 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 + VLDA TG +A+ Q + F G G+I+TK+D A GG + +V ++++GV Sbjct: 223 IKVLVLDALTGNDAIEQAKKFDEAIGIDGVILTKLDADASGGAAVSVVAGLGKKIFYVGV 282 Query: 292 GEGINDL 298 G+G +DL Sbjct: 283 GQGYDDL 289 >gi|51598337|ref|YP_072525.1| signal recognition particle-docking protein FtsY [Borrelia garinii PBi] gi|51572908|gb|AAU06933.1| signal recognition particle-docking protein FtsY [Borrelia garinii PBi] Length = 281 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 89/274 (32%), Positives = 166/274 (60%), Gaps = 9/274 (3%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 E I ++ S++ + + E LED+L+ SDI + +I+ +L TK K+ + + ++ + Sbjct: 5 EKIKNLFKSKQ-QENIIENLEDILLESDINNEIVIEIINKL-TKE--KNKNEKTIIEKLK 60 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 EL+ + K F + +++ +++L+VG+NG+GKT+ I KL+ K+ + G ++++A DT Sbjct: 61 ELLSNYINI--KKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADT 117 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+AAI+Q+K++ ++ + GSD +A+ +++ A+ K D LIIDTAGRL N Sbjct: 118 FRAAAIEQMKVYGEQIGIRIISQNQGSDPSAVIFDSISSAKIKNYDALIIDTAGRLQNKE 177 Query: 210 ILMAGIGKMIRV-LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 L+ + K+ V LK++ + + + + V+D+T G+N Q E+F+ G+I+TK+D Sbjct: 178 NLIKELQKINNVILKQIKNTNINYQKILVIDSTIGKNTNSQAEIFNKAIEIDGIIITKLD 237 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 ++R G +I I + P+YF GE + D++ F Sbjct: 238 SSSRAGVIINISKILEKPIYFTTFGETLEDIKEF 271 >gi|325971171|ref|YP_004247362.1| signal recognition particle-docking protein FtsY [Spirochaeta sp. Buddy] gi|324026409|gb|ADY13168.1| signal recognition particle-docking protein FtsY [Spirochaeta sp. Buddy] Length = 291 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 105/298 (35%), Positives = 163/298 (54%), Gaps = 12/298 (4%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 + KGF + KLK + D+ E LED LI D+G +A I E+ + Sbjct: 1 MLKGFGA---KLKA----LFGMNTFDENYFEMLEDFLIEGDLGAKLAMDITSEVRKLAKS 53 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKM 135 + Q+ D+ L+ ++L + F+ + + V L++GVNGVGKTT I KL+K Sbjct: 54 EKTKTQK---DLQLLVKRLLADKIRTFDENLDPKSLTVFLILGVNGVGKTTSIAKLAKYY 110 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 + G +V+LAA DTFR+AAIDQL++ A R V + GSD ++ ++A AQAK + Sbjct: 111 QNQGKQVLLAAADTFRAAAIDQLEVHAQRLGCRIVKQKSGSDPGSVVFDAITSAQAKGEN 170 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLK-RLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 ++++DTAGR+HN L+ + K+ +++K R + V+D+TTGQN + Q E+F+ Sbjct: 171 LILVDTAGRMHNKENLLRELSKIDKIVKGRGIDDVHYKKFLVIDSTTGQNGISQAELFNQ 230 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 LI+TK D A+GG L+ I IP+ F+G GE D+ F +F + G Sbjct: 231 AVKLDALILTKYDSLAKGGALVQIGEKQDIPIAFVGTGETYKDIHLFDKDEFLDTLVG 288 >gi|326776316|ref|ZP_08235581.1| signal recognition particle-docking protein FtsY [Streptomyces cf. griseus XylebKG-1] gi|326656649|gb|EGE41495.1| signal recognition particle-docking protein FtsY [Streptomyces cf. griseus XylebKG-1] Length = 403 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 124/315 (39%), Positives = 184/315 (58%), Gaps = 13/315 (4%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V + + +L A + L +G+ ++S LD+ EE+ED L+ +D+GVA Q Sbjct: 94 EVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQ 153 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDF-----SHRPHVILVVG 118 ++VE L R V R ++ L+ + L+ L P F+ + + P V++VVG Sbjct: 154 ELVERL---RERVRVLGTRTPEELRTLLREELITLLGPDFDREVKTEGGAETPGVVMVVG 210 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNG GKTT GKL++ + G V+L A DTFR+AA DQL+ W +R A V G D Sbjct: 211 VNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDP 270 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237 A++AY+A K+ A+ DV++IDTAGRLH + LM +GK+ RV+++ H P +L VL Sbjct: 271 ASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HGPLDEILLVL 327 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DATTGQN L Q +F V TG+++TK+DGTA+GG +I + +PV +G+GEG +D Sbjct: 328 DATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADD 387 Query: 298 LEPFVAKDFSAVITG 312 L PF F + G Sbjct: 388 LAPFEPGAFVDALIG 402 >gi|282162678|ref|YP_003355063.1| putative signal recognition particle receptor [Methanocella paludicola SANAE] gi|282154992|dbj|BAI60080.1| putative signal recognition particle receptor [Methanocella paludicola SANAE] Length = 347 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 98/279 (35%), Positives = 157/279 (56%), Gaps = 24/279 (8%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ-----RVLYDVS 89 I+S + L+ G ELE L+ SD+ + VA+ I++ R KD+S Q R D++ Sbjct: 69 ILSEKDLE-GPLWELEMALLESDVALPVAESIID-----RIRKDLSGQHKKFLRSTGDIA 122 Query: 90 E-LIHKMLMPLSKPFNWDFSH------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 E + ++ + DF +P +++ GVNG GKTT I KL++++ ++ + V Sbjct: 123 EDALRDAILTILSAHTLDFDDYVKGHDKPVIVVFTGVNGTGKTTTIAKLAERLKESNVGV 182 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 ++AAGDTFR+ AI+QL+ ADR + + GSD AA+ Y+A A++ K DV++ DTA Sbjct: 183 VIAAGDTFRAGAIEQLQKHADRLGVKMIKHDQGSDPAAVIYDAVAYAKSNKKDVVLADTA 242 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRLH N LM + K+ R+++ P V+ V +A G +A+ + ++F+ +G I Sbjct: 243 GRLHTNVNLMEQLKKISRIIR------PDLVIFVDEAIAGNDAVERAKLFNDAVPISGSI 296 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +TK D ++GG I I P+ FLGVG+ DL F Sbjct: 297 LTKADADSKGGAAISIAHITGKPILFLGVGQEYKDLRKF 335 >gi|260578974|ref|ZP_05846877.1| signal recognition particle FtsY [Corynebacterium jeikeium ATCC 43734] gi|258602948|gb|EEW16222.1| signal recognition particle FtsY [Corynebacterium jeikeium ATCC 43734] Length = 479 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 112/289 (38%), Positives = 169/289 (58%), Gaps = 13/289 (4%) Query: 31 GITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90 G+ I+S+ LD+ EE+ED L+ +D+G K+V++L + VS + + Sbjct: 197 GVLGILSAGDLDEDAWEEIEDTLLMADLGTPTTMKVVDDLRERIAVNGVSSE---AEARG 253 Query: 91 LIHKMLMPLSKPFNWD-------FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143 ++ + L+ KP + D + +P VI+VVGVNG GKTT GKLS+ + G KV+ Sbjct: 254 MLREALIDACKP-DMDRSIKAMPYEGKPAVIMVVGVNGTGKTTTTGKLSRVLIGMGHKVL 312 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 L A DTFR+AA DQL+ W R A+ V G+D A++A++A + VDV+++DTAG Sbjct: 313 LGAADTFRAAAADQLETWGRRVGAETVRGAEGADPASVAFDAVAKGIDSGVDVVLVDTAG 372 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 RLH + LM +GK+ RV+++ VL VLDAT GQN L Q F V +G+++ Sbjct: 373 RLHTSVGLMDQLGKVKRVVEK--KAKVDEVLLVLDATVGQNGLMQARTFREVVDISGVVL 430 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 TK+DGTA+GG + + +PV +G+GEG +DL PF + F + G Sbjct: 431 TKLDGTAKGGIVFQVQEELGVPVKMVGLGEGADDLAPFEVESFVDALLG 479 >gi|182435691|ref|YP_001823410.1| putative signal recognition particle-docking protein FtsY [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464207|dbj|BAG18727.1| putative signal recognition particle-docking protein FtsY [Streptomyces griseus subsp. griseus NBRC 13350] Length = 402 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 124/315 (39%), Positives = 184/315 (58%), Gaps = 13/315 (4%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V + + +L A + L +G+ ++S LD+ EE+ED L+ +D+GVA Q Sbjct: 93 EVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQ 152 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDF-----SHRPHVILVVG 118 ++VE L R V R ++ L+ + L+ L P F+ + + P V++VVG Sbjct: 153 ELVERL---RERVRVLGTRTPEELRTLLREELITLLGPDFDREVKTEGGAETPGVVMVVG 209 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNG GKTT GKL++ + G V+L A DTFR+AA DQL+ W +R A V G D Sbjct: 210 VNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDP 269 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237 A++AY+A K+ A+ DV++IDTAGRLH + LM +GK+ RV+++ H P +L VL Sbjct: 270 ASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HGPLDEILLVL 326 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DATTGQN L Q +F V TG+++TK+DGTA+GG +I + +PV +G+GEG +D Sbjct: 327 DATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADD 386 Query: 298 LEPFVAKDFSAVITG 312 L PF F + G Sbjct: 387 LAPFEPGAFVDALIG 401 >gi|226305925|ref|YP_002765885.1| signal recognition particle receptor [Rhodococcus erythropolis PR4] gi|226185042|dbj|BAH33146.1| signal recognition particle receptor [Rhodococcus erythropolis PR4] Length = 487 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 117/275 (42%), Positives = 167/275 (60%), Gaps = 17/275 (6%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 EE+ED L+ +D+G A +K+V +L + A+ V R L+ ++L+ +P D Sbjct: 221 EEVEDTLLIADLGSATTEKVVTKLREQMAARSV---RTEAAARALLREVLIAELRP-ELD 276 Query: 107 FSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 S R P V+LVVGVNG GKTT GKL++ + G +V+L A DTFR+AA DQL+ Sbjct: 277 RSIRALPHDDHPAVLLVVGVNGTGKTTTTGKLARVLVADGRRVVLGAADTFRAAAADQLQ 336 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 WA+R A+ V + G D AA+A++A + A VDV++IDTAGRLH + LM +GK+ Sbjct: 337 TWAERVGAEVVRGKEGGDPAAIAFDAVSRGIADGVDVVLIDTAGRLHTKTGLMDELGKVK 396 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 RV+++ + VL VLDAT GQN L Q +F V TG+++TK+DGTA+GG I Sbjct: 397 RVIEK--KASVDDVLLVLDATVGQNGLAQARVFAEVVDITGVVLTKLDGTAKGG--IVFQ 452 Query: 280 VTHK--IPVYFLGVGEGINDLEPFVAKDFSAVITG 312 V H+ +PV +G+GEG +DL PF F + G Sbjct: 453 VQHELGVPVKLVGLGEGADDLAPFEPGAFVDALLG 487 >gi|311898546|dbj|BAJ30954.1| putative signal recognition particle receptor [Kitasatospora setae KM-6054] Length = 416 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 120/284 (42%), Positives = 170/284 (59%), Gaps = 15/284 (5%) Query: 37 SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96 S RLD+ EE+E+ L+ +D+GV Q++V+ L T+ V R ++ L+ + L Sbjct: 140 SRDRLDEDTWEEIEETLLTADVGVGATQELVDNLRTRVK---VLGTRTPDELRGLLREEL 196 Query: 97 MPLSKPFNWDFSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 + L D + R P V+LVVGVNGVGKTT GKL++ + G KV+L A DT Sbjct: 197 VKLIG-TEADRTVRSVKHGDGPAVVLVVGVNGVGKTTTTGKLARVLVADGRKVVLGAADT 255 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+AA DQL+ W +R A V G D A++A++A KQ A VD +++DTAGRLH + Sbjct: 256 FRAAAADQLQTWGERVGAHTVRGPEGGDPASVAFDAVKQGIADGVDTVLVDTAGRLHTKT 315 Query: 210 ILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM +GK+ RV+++ H P VL VLDATTGQN L Q +F V TG+++TK+DG Sbjct: 316 GLMDELGKVKRVVEK---HGPVDEVLLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDG 372 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 TA+GG +I + +PV +G+GEG +DL PF F + G Sbjct: 373 TAKGGIVISVQRELGVPVKLIGLGEGADDLAPFEPGAFVDALLG 416 >gi|229816785|ref|ZP_04447067.1| hypothetical protein BIFANG_02032 [Bifidobacterium angulatum DSM 20098] gi|229785801|gb|EEP21915.1| hypothetical protein BIFANG_02032 [Bifidobacterium angulatum DSM 20098] Length = 420 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 113/302 (37%), Positives = 181/302 (59%), Gaps = 11/302 (3%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S +++L + + + + +I++ +L + E++ED L+ +D+G ++++VEEL Sbjct: 117 SRMQRLKARLSKSGNPFGKALFNILAKDQLSESDWEDVEDTLLLADVGAEASEQLVEELR 176 Query: 72 TKR----YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKT 125 + V+ L D +L+ + + + N D ++RP VI++VGVNG GKT Sbjct: 177 NDARIAGQSDPAEVRAALRD--KLLDVVGRDMDRRLNADKEGANRPSVIIMVGVNGTGKT 234 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYE 184 T GKL++ G KVML A DTFR+AA DQL+ W + V S+ G+D A++A+E Sbjct: 235 TTTGKLARLFVADGKKVMLGAADTFRAAAADQLETWGAKVGVPVVRSDKDGADPASVAFE 294 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A +A+ + DVLIIDTAGRL N + LM +GK+ RV ++ P VL VLDATTGQN Sbjct: 295 ASAKAKEENADVLIIDTAGRLQNKANLMDELGKIRRVTEKNLPV--DEVLLVLDATTGQN 352 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 + Q ++F G TG++++K+DG+A+GG ++ + +PV +G+GEG +DL PF + Sbjct: 353 GMAQAKVFAEAIGITGVVLSKLDGSAKGGIVVSVQKELGVPVKLVGLGEGPDDLAPFDPE 412 Query: 305 DF 306 F Sbjct: 413 GF 414 >gi|300783827|ref|YP_003764118.1| cell division protein FtsY [Amycolatopsis mediterranei U32] gi|299793341|gb|ADJ43716.1| cell division protein FtsY [Amycolatopsis mediterranei U32] Length = 429 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 113/275 (41%), Positives = 166/275 (60%), Gaps = 13/275 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEEL---LTKRYAKDVSVQR-VLYDV-----SELIHKMLM 97 +++ED L+ +D+G A +IVE L L++R + + R VL++V S H+ + Sbjct: 159 QDVEDTLLMADLGAATTNQIVERLRDELSRRAVRSSAEAREVLHEVLTAQLSTDGHRAVR 218 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 L P D +P V+LV GVNG GKTT GKL++ + G V+L A DTFR+AA DQ Sbjct: 219 AL--PHTVDGKKQPAVVLVAGVNGTGKTTTTGKLARVLVAQGGTVLLGAADTFRAAAADQ 276 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ WA+R A+ V + G+D AA+A++A K+ VD +++DTAGRLH + LM +GK Sbjct: 277 LQTWAERVGAEVVRGKEGADPAAVAFDAVKRGVDTGVDAVLVDTAGRLHTKTGLMDELGK 336 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + RV+++ VL VLDATTGQN L Q +F V TG+++TK+DGTA+GG + Sbjct: 337 VKRVVEKQ--AKVDEVLLVLDATTGQNGLMQARVFAEVIDVTGIVLTKLDGTAKGGIVFQ 394 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + +PV +G+GEG +DL PF F + G Sbjct: 395 VQKELGVPVKLVGLGEGPDDLAPFEPGAFVDALLG 429 >gi|229491381|ref|ZP_04385205.1| cell division protein FtsY [Rhodococcus erythropolis SK121] gi|229321666|gb|EEN87463.1| cell division protein FtsY [Rhodococcus erythropolis SK121] Length = 479 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 117/275 (42%), Positives = 167/275 (60%), Gaps = 17/275 (6%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 EE+ED L+ +D+G A +K+V +L + A+ V R L+ ++L+ +P D Sbjct: 213 EEVEDTLLIADLGSATTEKVVTKLREQMAARSV---RTEAAARALLREVLIAELRP-ELD 268 Query: 107 FSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 S R P V+LVVGVNG GKTT GKL++ + G +V+L A DTFR+AA DQL+ Sbjct: 269 RSIRALPHDDHPAVLLVVGVNGTGKTTTTGKLARVLVADGRRVVLGAADTFRAAAADQLQ 328 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 WA+R A+ V + G D AA+A++A + A VDV++IDTAGRLH + LM +GK+ Sbjct: 329 TWAERVGAEVVRGKEGGDPAAIAFDAVSRGIADGVDVVLIDTAGRLHTKTGLMDELGKVK 388 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 RV+++ + VL VLDAT GQN L Q +F V TG+++TK+DGTA+GG I Sbjct: 389 RVIEK--KASVDDVLLVLDATVGQNGLAQARVFAEVVDITGVVLTKLDGTAKGG--IVFQ 444 Query: 280 VTHK--IPVYFLGVGEGINDLEPFVAKDFSAVITG 312 V H+ +PV +G+GEG +DL PF F + G Sbjct: 445 VQHELGVPVKLVGLGEGADDLAPFEPGAFVDALLG 479 >gi|167969549|ref|ZP_02551826.1| cell division protein ftsY [Mycobacterium tuberculosis H37Ra] Length = 422 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 105/271 (38%), Positives = 159/271 (58%), Gaps = 9/271 (3%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLMPLSKP 102 +++ED L+ +D+G A +V +L ++ + +V + VL DV LI+++ + + Sbjct: 156 QDVEDTLLVADLGPAATASVVSQLRSRLASGNVRTEADARAVLRDV--LINELQPGMDRS 213 Query: 103 FN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 + P V+LVVGV+G GKTT +GKL++ + G +V+L A DTFR+AA DQL+ W Sbjct: 214 IRALPHAGHPSVLLVVGVHGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQTW 273 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 A R A V G+D A++A++A + A DV++IDTAGRLH LM + K+ RV Sbjct: 274 AARVGAAVVRGPEGADPASVAFDAVDKGIAAGADVVLIDTAGRLHTKVGLMDELDKVKRV 333 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 + R + VL VLDAT GQN L Q +F V +G ++TK+DGTA+GG + + Sbjct: 334 VTRR--ASVDEVLLVLDATIGQNGLAQARVFAEVVDISGAVLTKLDGTAKGGIVFRVQQE 391 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +PV +G+GEG +DL PF F + G Sbjct: 392 LGVPVKLVGLGEGPDDLAPFEPAAFVDALLG 422 >gi|68536275|ref|YP_250980.1| signal recognition particle receptor [Corynebacterium jeikeium K411] gi|68263874|emb|CAI37362.1| signal recognition particle receptor [Corynebacterium jeikeium K411] Length = 493 Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 112/289 (38%), Positives = 169/289 (58%), Gaps = 13/289 (4%) Query: 31 GITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90 G+ I+S+ LD+ EE+ED L+ +D+G K+V++L + VS + + Sbjct: 211 GVLGILSAGDLDEDAWEEIEDTLLMADLGTPTTMKVVDDLRERIAINGVSSEE---EARG 267 Query: 91 LIHKMLMPLSKPFNWD-------FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143 ++ + L+ KP + D + +P VI+VVGVNG GKTT GKLS+ + G KV+ Sbjct: 268 MLREALIDACKP-DMDRSIKAMPYEGKPAVIMVVGVNGTGKTTTTGKLSRVLIGMGHKVL 326 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 L A DTFR+AA DQL+ W R A+ V G+D A++A++A + VDV+++DTAG Sbjct: 327 LGAADTFRAAAADQLETWGRRVGAETVRGAEGADPASVAFDAVAKGIDAGVDVVLVDTAG 386 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 RLH + LM +GK+ RV+++ VL VLDAT GQN L Q F V +G+++ Sbjct: 387 RLHTSVGLMDQLGKVKRVVEK--KAKVDEVLLVLDATVGQNGLMQARTFREVVDISGVVL 444 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 TK+DGTA+GG + + +PV +G+GEG +DL PF + F + G Sbjct: 445 TKLDGTAKGGIVFQVQEELGVPVKMVGLGEGADDLAPFEVESFVDALLG 493 >gi|302865875|ref|YP_003834512.1| signal recognition particle-docking protein FtsY [Micromonospora aurantiaca ATCC 27029] gi|315502420|ref|YP_004081307.1| signal recognition particle-docking protein ftsy [Micromonospora sp. L5] gi|302568734|gb|ADL44936.1| signal recognition particle-docking protein FtsY [Micromonospora aurantiaca ATCC 27029] gi|315409039|gb|ADU07156.1| signal recognition particle-docking protein FtsY [Micromonospora sp. L5] Length = 396 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 113/291 (38%), Positives = 165/291 (56%), Gaps = 13/291 (4%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 +G+ ++S RLD+ EE+ED LI +D+G+ ++IV+ L R V R ++ Sbjct: 105 KGLLGLLSRDRLDEDTWEEIEDSLITADVGIDATREIVDRL---RERTRVLGTRTGEELR 161 Query: 90 ELIHKMLMPLSKP-FNWDFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143 L+ L+ P + P V+LVVGVNG GKTT GK+++ + G V+ Sbjct: 162 ALLAAELVNALDPGLDRSLRTAPKEGVPAVVLVVGVNGAGKTTTCGKIARVLVADGRSVL 221 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 L A DTFR+AA DQL+ W R A+ V +D A++A++A K+ VD ++IDTAG Sbjct: 222 LGAADTFRAAAADQLETWGGRVGAETVRGPEAADPASVAFDAVKRGIDTGVDTVLIDTAG 281 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 RL N LM +GK+ RV+++ H P L +LDATTGQN L Q +F TG++ Sbjct: 282 RLQNKIGLMDELGKVKRVVEK---HGPIDETLLILDATTGQNGLEQARVFTEAVNVTGVV 338 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 +TK+DGTA+GG +I + IPV +G+GEG +DL PF F + G Sbjct: 339 LTKLDGTAKGGIVIAVQRKLGIPVKLVGLGEGKDDLAPFDPAQFVDALLGT 389 >gi|297559202|ref|YP_003678176.1| signal recognition particle-docking protein FtsY [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843650|gb|ADH65670.1| signal recognition particle-docking protein FtsY [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 394 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 113/266 (42%), Positives = 160/266 (60%), Gaps = 11/266 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI-HKMLMPLSKPFNW 105 EE+ED LI +DIGVA A +IVE L T+ V R +V L+ ++L ++ + Sbjct: 126 EEIEDTLITADIGVASAAQIVENLRTR---VKVLGTRGTEEVRTLLREELLAQITTGADR 182 Query: 106 DFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 PH V++VVGVNG GKTT GKL++ + G V+L A DTFR+AA +QL+ Sbjct: 183 AVRTGPHDGRPGVVMVVGVNGTGKTTTTGKLARVLVGDGRSVVLGAADTFRAAATEQLET 242 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 W R A V E G+D A++A++A + + D +IIDTAGRLH + LM +GK+ R Sbjct: 243 WGSRVGAPVVRKEEGADPASVAFDAVARGVEEGADTVIIDTAGRLHTKTGLMDELGKVKR 302 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 V+++ VL VLDATTGQN LRQ +F V TG+ +TK+DGTA+GG ++ + Sbjct: 303 VVEKK--SQVDEVLLVLDATTGQNGLRQARVFGEVVNVTGIALTKLDGTAKGGIIVQVQR 360 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDF 306 +PV +G+GEG +DL PF + F Sbjct: 361 ELGVPVKLVGLGEGPDDLAPFDPEVF 386 >gi|312140444|ref|YP_004007780.1| signal recognition particle protein [Rhodococcus equi 103S] gi|325675941|ref|ZP_08155624.1| cell division protein FtsY [Rhodococcus equi ATCC 33707] gi|311889783|emb|CBH49100.1| signal recognition particle protein [Rhodococcus equi 103S] gi|325553179|gb|EGD22858.1| cell division protein FtsY [Rhodococcus equi ATCC 33707] Length = 497 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 116/275 (42%), Positives = 166/275 (60%), Gaps = 17/275 (6%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 EE+ED L+ +D+G A K+VE L + ++ V R + L+ ++L+ +P D Sbjct: 231 EEVEDTLLIADLGTATTVKVVERLREEMASRGV---RTEAEARALLREVLVEELRP-EMD 286 Query: 107 FSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 S R P V+LVVGVNG GKTT GKL++ + G +V+L A DTFR+AA DQL+ Sbjct: 287 RSIRALPHGDHPAVLLVVGVNGTGKTTTTGKLARVLVADGRRVLLGAADTFRAAAADQLQ 346 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 WA+R A+ V G D AA+A+++ + VDV++IDTAGRLH + LM +GK+ Sbjct: 347 TWAERVGAEVVRGPEGGDPAAIAFDSVAKGIEDGVDVVLIDTAGRLHTKTGLMDELGKVK 406 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 RV+++ A VL VLDAT GQN L Q +F V TG+++TK+DGTA+GG I Sbjct: 407 RVVEK--KAAVDDVLLVLDATVGQNGLMQARVFAEVVDITGVVLTKLDGTAKGG--IVFQ 462 Query: 280 VTHK--IPVYFLGVGEGINDLEPFVAKDFSAVITG 312 V H+ +PV +G+GEG +DL PF + F + G Sbjct: 463 VQHELGVPVKLVGLGEGADDLAPFEPEAFVDALLG 497 >gi|42527548|ref|NP_972646.1| signal recognition particle-docking protein FtsY [Treponema denticola ATCC 35405] gi|41818133|gb|AAS12557.1| signal recognition particle-docking protein FtsY [Treponema denticola ATCC 35405] gi|325474494|gb|EGC77681.1| signal recognition particle-docking protein FtsY [Treponema denticola F0402] Length = 292 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 98/265 (36%), Positives = 145/265 (54%), Gaps = 11/265 (4%) Query: 47 EELEDLLIRSDIGVAVAQKI---VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103 E+L D LI DIG A +I + EL K K VS DV ++ +L+P K Sbjct: 26 EDLTDTLIEGDIGAKTALEIEASLRELCKKE--KLVSED----DVLNGLYNILLPYVKVT 79 Query: 104 NW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIW 161 + + + LV+GVNGVGKTT IGK++ + G ++LAAGDTFR+AAI+QLK Sbjct: 80 SLIPEKDKVSIYLVLGVNGVGKTTSIGKMAHYYKEKYGTPIILAAGDTFRAAAIEQLKFH 139 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 ++ V + G D A+ ++A + +++ DTAGRLHN L+ + K+ R+ Sbjct: 140 GEKNDVRVVAHQHGGDPGAVIFDAGDAMASSGGGLVLADTAGRLHNKDNLVRELQKIDRI 199 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 K + + VLDATTGQN LRQ E+FH G + +TK D TA+GG + Sbjct: 200 AKTKASEGCYKKILVLDATTGQNGLRQAEVFHEAIGVDAVFLTKYDSTAKGGVAVTAGKE 259 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDF 306 +P+ F+G GE ++ PF A+++ Sbjct: 260 LNLPMLFVGTGEKYENISPFSAENY 284 >gi|292654298|ref|YP_003534195.1| signal recognition particle receptor SRalpha [Haloferax volcanii DS2] gi|33518607|gb|AAO73354.1| signal recognition particle receptor-like protein [Haloferax volcanii] gi|291372798|gb|ADE05025.1| signal recognition particle receptor SRalpha [Haloferax volcanii DS2] Length = 456 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 98/276 (35%), Positives = 147/276 (53%), Gaps = 18/276 (6%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE---ELLTKRYAKDVSVQRVLYDVSEL 91 +I L+D + E LE L++SD+ + VA++I+E E L K V L VSE Sbjct: 176 VIEEEDLEDPLWE-LEMALLQSDVEMQVAEEILETIREKLIGETRKQVESTGQL--VSEA 232 Query: 92 IHKMLMPLSKPFNWDFSHR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 +H L + +DF R P ++ G+NGVGKTT I KL+K G +LA Sbjct: 233 LHDALYEVISVGQFDFDQRIAEADKPVTLIFTGINGVGKTTTIAKLAKYFEKQGYSTVLA 292 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 GDT+R+ A +Q++ A+ + E G D AA+ Y+ + A+A +D+++ DTAGRL Sbjct: 293 NGDTYRAGANEQIREHAEALDKKLIAHEQGGDPAAVIYDGVEYAEAHDIDIVLGDTAGRL 352 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 H ++ LMA + K+ RV+ P L V +A GQ+A+ + F+ A G I+TK Sbjct: 353 HTSNDLMAQLEKIDRVV------GPDLTLFVDEAVAGQDAVERARQFNDAAAIDGAILTK 406 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 D + GG I I P+ FLGVG+G + +E F Sbjct: 407 ADADSNGGAAISIAYVTGKPILFLGVGQGYDHIEKF 442 >gi|294631634|ref|ZP_06710194.1| signal recognition particle FtsY [Streptomyces sp. e14] gi|292834967|gb|EFF93316.1| signal recognition particle FtsY [Streptomyces sp. e14] Length = 410 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 116/322 (36%), Positives = 180/322 (55%), Gaps = 27/322 (8%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V + + +L + + L +G+ ++S LD+ EE+ED L+ +D+GV Q Sbjct: 101 EVPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDEETWEEIEDTLLTADVGVQPTQ 160 Query: 65 KIVEELLTK-------------RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111 ++VE L + ++ + V DV + ++P +P Sbjct: 161 ELVERLRERVRVLGTRTPAELRTLLREELLTLVGTDVDRTVR------TEPDG----RKP 210 Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 +++VVGVNG GKTT GKL++ + G V+L A DTFR+AA DQL+ W +R A V Sbjct: 211 GIVMVVGVNGTGKTTTTGKLARVLVADGRTVVLGAADTFRAAAADQLQTWGERVGAHTVR 270 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP- 230 D A++A++A K+ + VDV++IDTAGRLH + LM +GK+ RV+++ HAP Sbjct: 271 GPEAGDPASVAFDAVKEGKEMGVDVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HAPL 327 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 VL VLDATTGQN L Q +F V +G+++TK+DGTA+GG +I + +PV +G Sbjct: 328 DEVLLVLDATTGQNGLVQARVFAEVVDISGIVLTKLDGTAKGGIVIAVQRELGVPVKLIG 387 Query: 291 VGEGINDLEPFVAKDFSAVITG 312 +GEG +DL PF + F + G Sbjct: 388 LGEGADDLAPFEPEAFVDALIG 409 >gi|284161352|ref|YP_003399975.1| signal recognition particle-docking protein FtsY [Archaeoglobus profundus DSM 5631] gi|284011349|gb|ADB57302.1| signal recognition particle-docking protein FtsY [Archaeoglobus profundus DSM 5631] Length = 367 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 100/290 (34%), Positives = 158/290 (54%), Gaps = 22/290 (7%) Query: 28 LKEGITDIISSRRL---DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 LK+ I ++ R + + V E LEDL L+ SD+ + V ++I +L + + + Sbjct: 71 LKDKIVALVKDREVVIDEKSVEEILEDLEIILLESDVALEVVEEISRQLKDRLVGRRRKI 130 Query: 82 QRVLYDV--SELIHKMLMPLSKP-FNWDF-------SHRPHVILVVGVNGVGKTTVIGKL 131 + D+ +EL +L L + F++D RP I+ VGVNG GKTT I K+ Sbjct: 131 GEKISDIVINELKLIILDILDRNRFDFDEFVESKLKEKRPLNIVFVGVNGTGKTTTIAKV 190 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +K++ D G V+LAAGDTFR+ AI+QL+ R + + G+D A+ Y+A K A++ Sbjct: 191 AKRLIDFGYSVVLAAGDTFRAGAIEQLEEHGKRLGVKVIKHKQGADPCAVIYDALKHAES 250 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K +D+++ DTAGR+H L+ + K+ RV K P V+ V ++ G +A+ + M Sbjct: 251 KGIDIVLADTAGRMHTKKNLIDQLAKIKRVTK------PDLVIFVDESIAGNDAVERARM 304 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 F+ G G I+TK+D +GG I I P+ FLG G+G +DL F Sbjct: 305 FNEAVGIDGTILTKIDADPKGGTAISISYVTGKPILFLGTGQGYDDLVKF 354 >gi|296139324|ref|YP_003646567.1| signal recognition particle-docking protein FtsY [Tsukamurella paurometabola DSM 20162] gi|296027458|gb|ADG78228.1| signal recognition particle-docking protein FtsY [Tsukamurella paurometabola DSM 20162] Length = 479 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 114/274 (41%), Positives = 165/274 (60%), Gaps = 15/274 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNW 105 EE+ED L+ +D+G K+VEEL + V+ + L+ K+L+ + P ++ Sbjct: 213 EEIEDTLLMADLGTPTTLKVVEELREQVATHGVANA---AEARALLRKVLIAEAHPEYDR 269 Query: 106 DFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 PH V+LVVGVNG GKTT GKL++ + G +V+L A DTFR+AA DQL+ Sbjct: 270 SIKALPHAGAPSVLLVVGVNGTGKTTTTGKLARVLVADGRRVLLGAADTFRAAAADQLQT 329 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 WA+R AD V + G+D AA+A++A + + VDV++IDTAGRLH + LM + K+ R Sbjct: 330 WAERVGADVVRGKEGADPAAVAFDAVAKGTEEGVDVVLIDTAGRLHTKTGLMDELDKVKR 389 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 V+++ VL VLDAT GQN L Q ++F V TG+++TK+DGTA+GG I V Sbjct: 390 VVEK--KAKVDEVLLVLDATIGQNGLSQAKVFAEVVDITGVVLTKLDGTAKGG--IVYAV 445 Query: 281 THK--IPVYFLGVGEGINDLEPFVAKDFSAVITG 312 H+ +PV +G+GEG +DL PF F + G Sbjct: 446 QHELGVPVKLVGLGEGADDLAPFEPGAFVDALLG 479 >gi|19553263|ref|NP_601265.1| signal recognition particle GTPase [Corynebacterium glutamicum ATCC 13032] Length = 582 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 109/282 (38%), Positives = 169/282 (59%), Gaps = 7/282 (2%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ---RVLYDVSEL 91 I+S+ LD+ E++E +LI++D+G + ++V+EL K V + R + S L Sbjct: 304 ILSAGDLDEDAWEDIEAMLIKADLGAKITARVVDELRDKIAEHGVGSEAEARAMLRAS-L 362 Query: 92 IHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 I L + + +P V+LVVGVNG GKTT GKL++ + G KV+L A DTF Sbjct: 363 IDACRPDLDRSIKAMPYEGKPAVVLVVGVNGTGKTTTTGKLARVLVSMGHKVILGAADTF 422 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R+AA DQL+ W R A+ V G+D A++A++A + ++ DV+++DTAGRLH ++ Sbjct: 423 RAAAADQLETWGRRVGAETVRGAEGADPASIAFDAVAKGVERQADVVLVDTAGRLHTSTG 482 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM +GK+ RV+++ VL VLDAT GQN ++Q +F V TG+++TK+DGTA Sbjct: 483 LMDQLGKVKRVVEKK--AVVDEVLLVLDATVGQNGMQQARIFREVVDITGVVLTKLDGTA 540 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +GG + + +PV +G+GEG +DL PF + F + G Sbjct: 541 KGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFVDALLG 582 >gi|62390899|ref|YP_226301.1| Signal recognition particle GTPase [Corynebacterium glutamicum ATCC 13032] gi|41326238|emb|CAF20400.1| Signal recognition particle GTPase [Corynebacterium glutamicum ATCC 13032] Length = 576 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 109/282 (38%), Positives = 169/282 (59%), Gaps = 7/282 (2%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ---RVLYDVSEL 91 I+S+ LD+ E++E +LI++D+G + ++V+EL K V + R + S L Sbjct: 298 ILSAGDLDEDAWEDIEAMLIKADLGAKITARVVDELRDKIAEHGVGSEAEARAMLRAS-L 356 Query: 92 IHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 I L + + +P V+LVVGVNG GKTT GKL++ + G KV+L A DTF Sbjct: 357 IDACRPDLDRSIKAMPYEGKPAVVLVVGVNGTGKTTTTGKLARVLVSMGHKVILGAADTF 416 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R+AA DQL+ W R A+ V G+D A++A++A + ++ DV+++DTAGRLH ++ Sbjct: 417 RAAAADQLETWGRRVGAETVRGAEGADPASIAFDAVAKGVERQADVVLVDTAGRLHTSTG 476 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM +GK+ RV+++ VL VLDAT GQN ++Q +F V TG+++TK+DGTA Sbjct: 477 LMDQLGKVKRVVEKK--AVVDEVLLVLDATVGQNGMQQARIFREVVDITGVVLTKLDGTA 534 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +GG + + +PV +G+GEG +DL PF + F + G Sbjct: 535 KGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFVDALLG 576 >gi|21324832|dbj|BAB99455.1| Signal recognition particle GTPase [Corynebacterium glutamicum ATCC 13032] Length = 510 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 110/285 (38%), Positives = 171/285 (60%), Gaps = 13/285 (4%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ---RVLYDVSEL 91 I+S+ LD+ E++E +LI++D+G + ++V+EL K V + R + S L Sbjct: 232 ILSAGDLDEDAWEDIEAMLIKADLGAKITARVVDELRDKIAEHGVGSEAEARAMLRAS-L 290 Query: 92 IHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 I L + + +P V+LVVGVNG GKTT GKL++ + G KV+L A DTF Sbjct: 291 IDACRPDLDRSIKAMPYEGKPAVVLVVGVNGTGKTTTTGKLARVLVSMGHKVILGAADTF 350 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R+AA DQL+ W R A+ V G+D A++A++A + ++ DV+++DTAGRLH ++ Sbjct: 351 RAAAADQLETWGRRVGAETVRGAEGADPASIAFDAVAKGVERQADVVLVDTAGRLHTSTG 410 Query: 211 LMAGIGKMIRVLKR---LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 LM +GK+ RV+++ +D VL VLDAT GQN ++Q +F V TG+++TK+D Sbjct: 411 LMDQLGKVKRVVEKKAVVD-----EVLLVLDATVGQNGMQQARIFREVVDITGVVLTKLD 465 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 GTA+GG + + +PV +G+GEG +DL PF + F + G Sbjct: 466 GTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFVDALLG 510 >gi|300933892|ref|ZP_07149148.1| signal recognition particle receptor [Corynebacterium resistens DSM 45100] Length = 483 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 112/288 (38%), Positives = 166/288 (57%), Gaps = 11/288 (3%) Query: 31 GITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90 G+ I+S+ LD+ EE+ED L+ +D+G +VE+L + VS + + Sbjct: 201 GVLGILSAGDLDEDAWEEIEDTLLMADLGTKTTLAVVEDLRERIAINGVSSE---AEARA 257 Query: 91 LIHKMLMPLSKPF------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 ++ L+ KP + +P VI+VVGVNG GKTT GKLS+ + KV+L Sbjct: 258 MLRAALIDACKPELDRSIKAMPYDGKPAVIMVVGVNGTGKTTTTGKLSRVLVGMDHKVLL 317 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 A DTFR+AA DQL+ W R A+ V + G+D A++A++A + VDV++IDTAGR Sbjct: 318 GAADTFRAAAADQLETWGRRVGAETVRGKEGADPASVAFDAVAKGTEDGVDVVVIDTAGR 377 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 LH + LM +GK+ RV+++ VL VLDAT GQN L Q +F V TG+++T Sbjct: 378 LHTSVGLMDQLGKVKRVVEKK--AKVDEVLLVLDATVGQNGLMQARVFREVVDITGVVLT 435 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 K+DGTA+GG + + +PV +G+GEG +DL PF + F + G Sbjct: 436 KLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVESFVDALLG 483 >gi|254172639|ref|ZP_04879314.1| signal recognition particle-docking protein FtsY [Thermococcus sp. AM4] gi|214033568|gb|EEB74395.1| signal recognition particle-docking protein FtsY [Thermococcus sp. AM4] Length = 328 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 101/286 (35%), Positives = 159/286 (55%), Gaps = 24/286 (8%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV----QRVLYD-VSELI 92 R LDD LE L+ +D+ + V ++ E + K + V + +++ D V E + Sbjct: 53 ERALDD-----LEIELLEADVALEVVDELRESIKRKLVGRKVKIGTDKAKIIEDAVKEAV 107 Query: 93 HKMLMPLSKPFNWDF----SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 ++L P K + +P+VI+ VG NG GKTT I KL+ + GL V++AA D Sbjct: 108 LEVLTPPRKINLLEEIRAKKEKPYVIVFVGFNGSGKTTTIAKLAHWLKKNGLSVVIAASD 167 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+ AI+Q++ A R + G+D AA+AY+A + A+A+ +DV+++DTAGR N Sbjct: 168 TFRAGAIEQVEEHAKRVGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLVDTAGRNELN 227 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM + K++RV K P V+ V D+ G + + Q F+ G+I+TK+D Sbjct: 228 RNLMDEMKKIVRVTK------PDLVIFVGDSLAGNSIIDQARQFNEAVRIDGVILTKLDA 281 Query: 269 TARGGGLIPIVVTHKI--PVYFLGVGEGINDLEPFVAKDFSAVITG 312 +RGG + I +H I P+ F+GVG+G +DL+PF K F +I G Sbjct: 282 DSRGGAALSI--SHAIGAPILFVGVGQGYDDLKPFDEKWFVNLIFG 325 >gi|282861362|ref|ZP_06270427.1| signal recognition particle-docking protein FtsY [Streptomyces sp. ACTE] gi|282564020|gb|EFB69557.1| signal recognition particle-docking protein FtsY [Streptomyces sp. ACTE] Length = 401 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 124/315 (39%), Positives = 184/315 (58%), Gaps = 13/315 (4%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V + + +L A + L +G+ ++S LD+ EE+ED L+ +D+GVA Q Sbjct: 92 EVPEPTAGRLVRLRARLARSQNSLGKGLLALLSRDNLDEDTWEEIEDTLLTADVGVAPTQ 151 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDF-----SHRPHVILVVG 118 ++VE L R V R ++ L+ + L+ L P F+ + + P V++VVG Sbjct: 152 ELVERL---RERVRVLGTRTPEELRALLREELVALLGPDFDREVKTEGGAETPGVVMVVG 208 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNG GKTT GKL++ + G V+L A DTFR+AA DQL+ W +R A V G D Sbjct: 209 VNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDP 268 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237 A++A++A K+ A+ DV++IDTAGRLH + LM +GK+ RV+++ H P VL VL Sbjct: 269 ASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HGPLDEVLLVL 325 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DATTGQN L Q +F V TG+++TK+DGTA+GG +I + +PV +G+GEG +D Sbjct: 326 DATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGPDD 385 Query: 298 LEPFVAKDFSAVITG 312 L PF F + G Sbjct: 386 LAPFEPGAFVDALIG 400 >gi|302525136|ref|ZP_07277478.1| signal recognition particle-docking protein FtsY [Streptomyces sp. AA4] gi|302434031|gb|EFL05847.1| signal recognition particle-docking protein FtsY [Streptomyces sp. AA4] Length = 447 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 110/279 (39%), Positives = 163/279 (58%), Gaps = 21/279 (7%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL------- 99 +++ED L+ +D+G A +IV+ L + + V R + EL+H++L Sbjct: 177 QDVEDTLLMADLGAATTTQIVDRLRDELNRRAV---RTSAEARELLHEVLTAALSTDAER 233 Query: 100 ---SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 + P D P V+LV GVNG GKTT GKL++ + G V+L A DTFR+AA D Sbjct: 234 AVRALPHEVDGKKEPAVVLVAGVNGTGKTTTTGKLARVLVAQGGTVVLGAADTFRAAAAD 293 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL+ W +R A + + G+D AA+A++A KQ ++ VD +++DTAGRLH + LM +G Sbjct: 294 QLQTWGERVGASVIRGKEGADPAAVAFDAVKQGISEGVDTVLVDTAGRLHTKTGLMDELG 353 Query: 217 KMIRVLK---RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 K+ RV++ R+D VL VLDATTGQN L Q +F V TG+++TK+DGTA+GG Sbjct: 354 KVKRVVEKQARVD-----EVLLVLDATTGQNGLAQARVFAEVIDVTGIVLTKLDGTAKGG 408 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + + +PV +G+GEG +DL PF F + G Sbjct: 409 IVFQVQKELGVPVKLVGLGEGPDDLAPFEPGAFVDALLG 447 >gi|118431321|ref|NP_147702.2| signal recognition particle protein [Aeropyrum pernix K1] gi|116062644|dbj|BAA80066.2| probable signal recognition particle protein [Aeropyrum pernix K1] Length = 308 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 96/300 (32%), Positives = 163/300 (54%), Gaps = 20/300 (6%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLI---RSDIGVAVAQKIV---- 67 +L + S + GI D ++ + L + + L+D+LI SD+ + A+ IV Sbjct: 4 RLREALNRASEHIARGIVDTLAYKELKPEDLEPVLDDILIDLVESDVALEAAESIVAGVK 63 Query: 68 EELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKP-----FNWDFSHRPHVILVVGVNG 121 E L R + V++V+ D + + + +L P +P RP VIL +GVNG Sbjct: 64 EGLTGYRVRRGEPVEKVVRDALRKALLTLLDPGPRPDLAAEARRRCGGRPLVILFLGVNG 123 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT I K++ + AG+ ++AA DTFR+ A +QL + A++ V G D A++ Sbjct: 124 TGKTTTIAKVAYMLRKAGVTPVIAAADTFRAGAQEQLAVHAEKLGVPIVRGRYGGDPASV 183 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 AY+A K A+++ +++DTAGR+H +S L+ + K++RV+K P + V+D+ T Sbjct: 184 AYDAVKHAESRGFCAVLVDTAGRMHVDSNLVEELRKIVRVVK------PDYKILVVDSLT 237 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 G +A+ Q +F G G+I+TK+D +GG L+ + + P+ ++G G+ DL PF Sbjct: 238 GNDAVEQARLFDEAVGVDGVIVTKVDADPKGGTLVSVAHAIRKPILYIGTGQRYEDLRPF 297 >gi|311739745|ref|ZP_07713580.1| cell division protein FtsY [Corynebacterium pseudogenitalium ATCC 33035] gi|311305561|gb|EFQ81629.1| cell division protein FtsY [Corynebacterium pseudogenitalium ATCC 33035] Length = 660 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 113/293 (38%), Positives = 173/293 (59%), Gaps = 19/293 (6%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 +G+ I+S+ LD+ EE+ED LI +D+G K+ + L K + VS + + Sbjct: 375 QGLMGILSAGDLDEDAWEEVEDTLIMADLGTKSTMKVTDSLREKIAERGVSSE---DEAR 431 Query: 90 ELIHKMLMPLSKPFNWDFS-------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 ++ + L+ P D S +P +++VVGVNG GKTT GKL++ + G KV Sbjct: 432 AMLRECLIEAGHP-EMDRSIKAMPNEGKPAIVMVVGVNGTGKTTTTGKLARVLVSMGHKV 490 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +L A DTFR+AA DQL+ W R AD V + G+D A++A++A ++VDV+++DTA Sbjct: 491 LLGAADTFRAAAADQLETWGRRVGADTVRGKEGADPASVAFDAVATGVEQQVDVVLVDTA 550 Query: 203 GRLHNNSILMAGIGKMIRVLKR---LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 GRLH ++ LM +GK+ RV+++ +D VL VLDAT GQN L Q +F V T Sbjct: 551 GRLHTSTDLMDQLGKVKRVVEKKTDVD-----EVLLVLDATVGQNGLTQARIFREVVDIT 605 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 G+++TK+DGTA+GG + + +PV +G+GEG +DL PF + F + G Sbjct: 606 GVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFVDALLG 658 >gi|255325270|ref|ZP_05366376.1| signal recognition particle GTPase [Corynebacterium tuberculostearicum SK141] gi|255297835|gb|EET77146.1| signal recognition particle GTPase [Corynebacterium tuberculostearicum SK141] Length = 659 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 114/291 (39%), Positives = 172/291 (59%), Gaps = 15/291 (5%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 +G+ I+S+ LD+ EE+ED LI +D+G K+ + L K + VS + + Sbjct: 374 QGLMGILSAGDLDEDAWEEVEDTLIMADLGTKSTMKVTDSLREKIAERGVSSE---DEAR 430 Query: 90 ELIHKMLMPLSKPFNWDFS-------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 ++ + L+ P D S +P +++VVGVNG GKTT GKL++ + G KV Sbjct: 431 AMLRECLIEAGHP-EMDRSIKAMPNEGKPAIVMVVGVNGTGKTTTTGKLARVLVAMGHKV 489 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +L A DTFR+AA DQL+ W R AD V + G+D A++A++A ++VDV+++DTA Sbjct: 490 LLGAADTFRAAAADQLETWGRRVGADTVRGKEGADPASVAFDAVATGVEQQVDVVLVDTA 549 Query: 203 GRLHNNSILMAGIGKMIRVL-KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 GRLH ++ LM +GK+ RV+ K+ D VL VLDAT GQN L Q +F V TG+ Sbjct: 550 GRLHTSTDLMDQLGKVKRVVEKKTD---VDEVLLVLDATVGQNGLTQARIFREVVDITGV 606 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 ++TK+DGTA+GG + + +PV +G+GEG +DL PF + F + G Sbjct: 607 VLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFVDALLG 657 >gi|222479253|ref|YP_002565490.1| signal recognition particle-docking protein FtsY [Halorubrum lacusprofundi ATCC 49239] gi|222452155|gb|ACM56420.1| signal recognition particle-docking protein FtsY [Halorubrum lacusprofundi ATCC 49239] Length = 371 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 94/263 (35%), Positives = 144/263 (54%), Gaps = 17/263 (6%) Query: 48 ELEDLLIRSDIGVAVAQKI---VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104 +LE L+ SD+ ++VA++I V E + K V L V +H L+ + Sbjct: 104 DLEMALLESDVEMSVAERILDTVREKMLGESRKQVETTGEL--VESALHDALLDVIAVGQ 161 Query: 105 WDFSHR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +DF R P I+ GVNGVGKTT I KLS+ ++D G ++A GDT+R+ A +Q+ Sbjct: 162 FDFEERIAEADKPVTIVFTGVNGVGKTTSIAKLSEWLADRGYSSVMANGDTYRAGANEQI 221 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 + ADR + + + G D AA+ Y+ + A+A +DV++ DTAGRLH + LMA + K+ Sbjct: 222 QEHADRLDRELISHDQGGDPAAVIYDGVEYAEANDIDVVLGDTAGRLHTSDDLMAQLEKI 281 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 RV+ AP L V +A GQ+A+ + + F+ A G ++TK D + GG I + Sbjct: 282 DRVV------APDMTLFVDEAVAGQDAVNRAKEFNDAAEIDGAVLTKADADSSGGAAISV 335 Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301 P+ FLG G+G +DL F Sbjct: 336 AYVTGKPILFLGTGQGYDDLTLF 358 >gi|300858750|ref|YP_003783733.1| signal recognition particle receptor [Corynebacterium pseudotuberculosis FRC41] gi|300686204|gb|ADK29126.1| signal recognition particle receptor [Corynebacterium pseudotuberculosis FRC41] gi|302206457|gb|ADL10799.1| Cell division protein ftsY-like protein [Corynebacterium pseudotuberculosis C231] gi|302331013|gb|ADL21207.1| Signal recognition particle GTPase [Corynebacterium pseudotuberculosis 1002] gi|308276699|gb|ADO26598.1| Signal recognition particle GTPase [Corynebacterium pseudotuberculosis I19] Length = 548 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 109/284 (38%), Positives = 168/284 (59%), Gaps = 11/284 (3%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94 ++S+ LD+ E++E LI++D+GVA+ K+V++L + V+ + + ++ + Sbjct: 270 MLSAGELDEDAWEDIEAQLIQADLGVAITTKVVDDLREMIAERGVASE---AEARAMLKE 326 Query: 95 MLMPLSKPF------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 L+ KP + +P V+LVVGVNG GKTT GKL++ + G V+L A D Sbjct: 327 CLIRACKPELDRSIKAIPYEGKPAVVLVVGVNGTGKTTTTGKLARVLVAMGHSVVLGAAD 386 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+AA DQL+ W R A + G+D A++A++A + DV+++DTAGRLHN+ Sbjct: 387 TFRAAAADQLETWGRRVGARTIRGAEGADPASVAFDAVAEGVKIGADVVLVDTAGRLHNS 446 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 S LM +GK+ RV+++ VL VLDATTGQN L Q F V TG+++TK+DG Sbjct: 447 SNLMDQLGKVKRVVEK--KAVVDEVLLVLDATTGQNGLTQARTFREVVNITGVVLTKLDG 504 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 TA+GG + + +PV +G+GEG +DL PF + F + G Sbjct: 505 TAKGGIVFQVQEDLGVPVKLVGLGEGADDLAPFEVEGFVDALLG 548 >gi|262202014|ref|YP_003273222.1| signal recognition particle-docking protein FtsY [Gordonia bronchialis DSM 43247] gi|262085361|gb|ACY21329.1| signal recognition particle-docking protein FtsY [Gordonia bronchialis DSM 43247] Length = 531 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 112/277 (40%), Positives = 166/277 (59%), Gaps = 9/277 (3%) Query: 35 IISSRRLDDGVREELEDLLIRSDIG----VAVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90 ++ + LD+ EE+ED L+ +D+G AV +++ EEL T + +L V Sbjct: 254 LLGAGDLDEDSWEEIEDTLVMADLGSSTTAAVVERLREELATNNVRTAEQARALLKRV-- 311 Query: 91 LIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 L+ ++ L + + RP V+LVVGVNG GKTT GKL++ + G +V+L A DT Sbjct: 312 LVEQLRPELDRSVKALPHAGRPAVVLVVGVNGTGKTTTTGKLARVLVADGRRVLLGAADT 371 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+AA DQL+ W +R A+ V + +D AA+A++A + VDV++IDTAGRLH + Sbjct: 372 FRAAAADQLQTWGERVGAEVVRGKEKADPAAVAFDAVDRGIDAGVDVVMIDTAGRLHTKT 431 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 LM +GK+ RV+++ P VL VLDAT GQN L Q +F V TGL++TK+DGT Sbjct: 432 GLMDELGKVKRVVEKKAPV--DEVLLVLDATVGQNGLMQARVFAEVVDITGLVLTKLDGT 489 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 A+GG + + +PV +G+GEG +DL PF + F Sbjct: 490 AKGGIVFHVQKELGVPVKLVGLGEGADDLAPFEPEAF 526 >gi|238063292|ref|ZP_04608001.1| signal recognition particle-docking protein ftsY [Micromonospora sp. ATCC 39149] gi|237885103|gb|EEP73931.1| signal recognition particle-docking protein ftsY [Micromonospora sp. ATCC 39149] Length = 395 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 114/291 (39%), Positives = 163/291 (56%), Gaps = 13/291 (4%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 +G+ ++S LD+ EE+ED LI +D+G+ + IV+ L R V R ++ Sbjct: 104 KGLLGLLSRDHLDEDTWEEIEDSLITADVGIDATRDIVDRL---RERTRVLGTRSATELR 160 Query: 90 ELIHKMLMPLSKP-FNWDFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143 L+ L+ P + P V+LVVGVNG GKTT GK+++ + G V+ Sbjct: 161 ALLAAELVDALDPALDRSLRTAPKDGVPAVVLVVGVNGAGKTTTCGKIARVLVADGRSVL 220 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 L A DTFR+AA DQL+ W R A+ V +D A++A++A K+ VD ++IDTAG Sbjct: 221 LGAADTFRAAAADQLQTWGGRVGAETVRGPEAADPASVAFDAVKRGIDTGVDTVLIDTAG 280 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 RL N LM +GK+ RV+ + H P L VLDATTGQN L Q +F V TG++ Sbjct: 281 RLQNKVGLMDELGKVKRVVSK---HGPIDETLLVLDATTGQNGLEQARVFTEVVNVTGVV 337 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 +TK+DGTA+GG +I + IPV +G+GEG +DL PF F + G Sbjct: 338 LTKLDGTAKGGIVIAVQRKLGIPVKLVGLGEGKDDLAPFDPAQFVDALLGT 388 >gi|294495862|ref|YP_003542355.1| signal recognition particle-docking protein FtsY [Methanohalophilus mahii DSM 5219] gi|292666861|gb|ADE36710.1| signal recognition particle-docking protein FtsY [Methanohalophilus mahii DSM 5219] Length = 351 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 94/261 (36%), Positives = 146/261 (55%), Gaps = 13/261 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKP 102 ELE L+ SDI ++V++KIV +EL+ R + +++ D + + IH ++ Sbjct: 86 ELEMSLLESDIAISVSEKIVTDVKQELVGSRKKIGSNTGKIVEDALKKSIHDVMSANVFD 145 Query: 103 FNW--DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 F+ D +P I+ VG+NG GKTT I K++ ++ V++AAGDTFR+ AIDQ+ + Sbjct: 146 FDEFIDSLEKPVNIVFVGINGTGKTTSIAKIAHRLKAMNKSVVIAAGDTFRAGAIDQIAV 205 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A+R + + G D AA+ Y+A + A+A DV++ DTAGR+H N LMA + K+ R Sbjct: 206 HAERIGVKLIKHQEGGDPAAVVYDAVQYAKAHDSDVVLSDTAGRMHTNVNLMAQLQKICR 265 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 V P VL V +A G +A+ + E F+ G I+TK D ++GG I I Sbjct: 266 V------SPPDLVLFVDEAVAGNDAVERAEQFNEAVPVDGSILTKTDADSKGGAAISIAY 319 Query: 281 THKIPVYFLGVGEGINDLEPF 301 P+ FLG+G+ DL+ F Sbjct: 320 ITGKPIVFLGLGQEYEDLKKF 340 >gi|163781730|ref|ZP_02176730.1| signal recognition particle receptor protein [Hydrogenivirga sp. 128-5-R1-1] gi|159882950|gb|EDP76454.1| signal recognition particle receptor protein [Hydrogenivirga sp. 128-5-R1-1] Length = 439 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 110/311 (35%), Positives = 163/311 (52%), Gaps = 34/311 (10%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 LT+ F+ T KLK+ +R+L D V + D L DI +A+ + V+ +TKR+ Sbjct: 5 LTEKFSGTLSKLKK-------ARKLTDKV---INDAL--RDIRLALLEADVDYEVTKRFL 52 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH------------RPHVILVVGVNGVGK 124 K V +R L S + K L P + + + +L VG+ G GK Sbjct: 53 KKVR-ERAL---SSEVKKNLSPAEQVITIVYEELVNILGKEKEDLKKGTVLFVGLQGTGK 108 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+ + G KV +++ D R AA+ QL+ A+R + E G A LA + Sbjct: 109 TTTIGKLAHLLKKKGFKVAVSSTDVRRPAAMLQLERLAERVGVPYYSFEEGLSAVELARK 168 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A ++A+ + VD L++DTAGRLH + LM + +R +K + P ++ V DA GQ Sbjct: 169 AVERAKREGVDYLLLDTAGRLHVDEELM----EELRSIK--EEVKPSEIIYVADAMQGQT 222 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 AL + FH + G TG+++TKMDG ARGG + + T +P+ F+GVGE I DLEPF Sbjct: 223 ALETAKTFHELLGLTGVVLTKMDGDARGGLALSVRETLGVPIKFIGVGEKIEDLEPFYPD 282 Query: 305 DFSAVITGCLD 315 + I G D Sbjct: 283 RVAQRILGLGD 293 >gi|227548999|ref|ZP_03979048.1| signal recognition particle GTPase [Corynebacterium lipophiloflavum DSM 44291] gi|227078909|gb|EEI16872.1| signal recognition particle GTPase [Corynebacterium lipophiloflavum DSM 44291] Length = 517 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 116/306 (37%), Positives = 175/306 (57%), Gaps = 13/306 (4%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 I KL + + + +G+ I+++ LD+ EE+ED LI +D+G + K+ E L K Sbjct: 218 IGKLRGRLSRSQNAIGQGLLGILTAGDLDEDAWEEIEDTLIMADLGTQLTLKVSESLRAK 277 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-------HRPHVILVVGVNGVGKTT 126 + VS + + L+ + L+ + P D S +P VILVVGVNG GKTT Sbjct: 278 IAERGVSSE---AEARALLREALIEAAHP-EMDRSIKAMPNEGKPAVILVVGVNGTGKTT 333 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 GKL++ + G V+L A DTFR+AA DQL+ W R A V + G+D A++A++A Sbjct: 334 TTGKLARVLVSMGHSVVLGAADTFRAAAADQLETWGRRVGASTVRGKEGADPASVAFDAV 393 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + DV+++DTAGRLH + LM +GK+ RV+++ H VL VLDAT GQN + Sbjct: 394 ATGVDQGADVVLVDTAGRLHTATGLMDQLGKVRRVVEKKS-HV-DEVLLVLDATVGQNGI 451 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q +F V TG+++TK+DGTA+GG + + +PV +G+GEG +DL PF + F Sbjct: 452 TQARVFREVVNITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVESF 511 Query: 307 SAVITG 312 + G Sbjct: 512 VDALLG 517 >gi|269795674|ref|YP_003315129.1| signal recognition particle-docking protein FtsY [Sanguibacter keddieii DSM 10542] gi|269097859|gb|ACZ22295.1| signal recognition particle-docking protein FtsY [Sanguibacter keddieii DSM 10542] Length = 405 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 118/305 (38%), Positives = 181/305 (59%), Gaps = 22/305 (7%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L + A + L + ++S L + +ELE+ L+ +D+G A +++++L T+ Sbjct: 102 RLRERLARSGSPLGTRLLAVLSRDHLTEDDWDELEETLLLADMGAGPAGELIDDLRTQ-- 159 Query: 76 AKDVSVQRV--LYDVSELIHKMLMPLSKP-FNWDFS---------HRPHVILVVGVNGVG 123 V VQ V V ++ L+ L P + S P V+LVVGVNG G Sbjct: 160 ---VRVQGVKDAAGVRAMLRGALVTLVDPTLDRSLSTTATTTDGTKVPAVVLVVGVNGTG 216 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAAALA 182 KTT +GKL++ + G +V+L A DTFR+AA DQL W R + + S + G+D AA+A Sbjct: 217 KTTTVGKLTRVLVADGNQVVLGAADTFRAAAADQLTTWGARVGVETIRSFKDGADPAAVA 276 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS-VLQVLDATT 241 ++A + + + VDV+++DTAGRL N + LM +GK+ RV+ + AP S VL VLDATT Sbjct: 277 FDAVRAGKERGVDVVLVDTAGRLQNKAGLMDELGKISRVITK---EAPLSEVLLVLDATT 333 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQN L Q +F VAG TG+++TK+DGTA+GG ++ + +PV +G+GEG +DL PF Sbjct: 334 GQNGLNQARVFAEVAGVTGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGPDDLAPF 393 Query: 302 VAKDF 306 ++F Sbjct: 394 DPEEF 398 >gi|156937965|ref|YP_001435761.1| signal recognition particle-docking protein FtsY [Ignicoccus hospitalis KIN4/I] gi|156566949|gb|ABU82354.1| signal recognition particle-docking protein FtsY [Ignicoccus hospitalis KIN4/I] Length = 340 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 82/199 (41%), Positives = 122/199 (61%), Gaps = 6/199 (3%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 I+ +GVNGVGKTT I K++ M AG+ +LAA DTFR+ A++QLK+ A+R + Sbjct: 145 IMFMGVNGVGKTTTIAKVAYAMKRAGVTPVLAAADTFRAGAVEQLKVHAERMGVPIITKP 204 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 GSD A++AY+A + A+A+ +V++IDTAGR+H + LM + K+ RV + P Sbjct: 205 YGSDPASVAYDAIEYAKARGFNVVLIDTAGRMHVDVDLMNELRKVARVAE------PDYK 258 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 + VLDA TG +A+ Q + F G +I+TK+D A+GG ++ + T K PV +LGVG+ Sbjct: 259 VLVLDALTGNDAVEQAKFFDEAVGVDAVILTKVDADAKGGAVLSVAATIKKPVLYLGVGQ 318 Query: 294 GINDLEPFVAKDFSAVITG 312 DL F K F + G Sbjct: 319 NYEDLIKFDPKWFVERLLG 337 >gi|256809975|ref|YP_003127344.1| signal recognition particle-docking protein FtsY [Methanocaldococcus fervens AG86] gi|256793175|gb|ACV23844.1| signal recognition particle-docking protein FtsY [Methanocaldococcus fervens AG86] Length = 397 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 91/258 (35%), Positives = 149/258 (57%), Gaps = 16/258 (6%) Query: 56 SDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYD-----VSELIHKMLMPLSKPFNWD 106 +D+ + V +K++E EL+ K+ + D V+ + + + ++ + + + + + Sbjct: 125 ADVALEVVEKLIENIKNELVGKKISPDDDVEEITINAVKNAIKNILSQEKIDIEEIIKKN 184 Query: 107 FSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + +P VI+ VG+NG GKTT I KL+ K+ G V+LAAGDTFR+ AI+QL+ A Sbjct: 185 KAQGKPTVIVFVGINGTGKTTTIAKLAYKLKQKGYSVVLAAGDTFRAGAIEQLEQHAKNI 244 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + G+D+AA+ Y+A + A+A+ +DV++ DTAGR N+ LM I K++RV K Sbjct: 245 GVKVIKHKQGADSAAVIYDAIQHAKARGIDVVLADTAGRQATNTNLMEEIKKVVRVTK-- 302 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P V+ V DA TG +A+ Q E F+ G+I+TK+D A+GG + I P Sbjct: 303 ----PDLVIFVGDALTGNDAVYQAEEFNKAVDIDGIILTKVDADAKGGAALSIGYAIGKP 358 Query: 286 VYFLGVGEGINDLEPFVA 303 + +LGVG+ +DL F A Sbjct: 359 ILYLGVGQRYSDLIEFDA 376 >gi|145296027|ref|YP_001138848.1| hypothetical protein cgR_1950 [Corynebacterium glutamicum R] gi|140845947|dbj|BAF54946.1| hypothetical protein [Corynebacterium glutamicum R] Length = 586 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 108/285 (37%), Positives = 173/285 (60%), Gaps = 13/285 (4%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94 I+S+ LD+ E++E +LI++D+G V ++V++L K + V + + ++ + Sbjct: 308 ILSAGDLDEDAWEDIEAMLIKADLGSKVTARVVDKLRDKIAERGVGSE---AEARAMLRE 364 Query: 95 MLMPLSKPFNWDFS-------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 L+ +P + D S +P V+LVVGVNG GKTT GKL++ + G KV+L A Sbjct: 365 TLIDACRP-DLDRSIKAMPNEGKPAVVLVVGVNGTGKTTTTGKLARVLVSMGHKVVLGAA 423 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DTFR+AA DQL+ W R A+ V G+D A++A++A + ++ DV++IDTAGRLH Sbjct: 424 DTFRAAAADQLETWGRRVGAETVRGAEGADPASIAFDAVAKGVERQADVVLIDTAGRLHT 483 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 ++ LM +GK+ RV+++ VL VLD+T GQN ++Q +F V TG+++TK+D Sbjct: 484 STGLMDQLGKVKRVVEKK--AVVDEVLLVLDSTVGQNGMQQARIFREVVEITGVVLTKLD 541 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 GTA+GG + + +PV +G+GEG +DL PF + F + G Sbjct: 542 GTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFVDALLG 586 >gi|332157901|ref|YP_004423180.1| signal recognition particle protein [Pyrococcus sp. NA2] gi|331033364|gb|AEC51176.1| signal recognition particle protein [Pyrococcus sp. NA2] Length = 322 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 90/259 (34%), Positives = 145/259 (55%), Gaps = 16/259 (6%) Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF------SHRPHV 113 A+ ++I + L+ K+ + ++++ + V + + ++L P P D + +P+V Sbjct: 69 ALKERIKKNLVGKKVKIGTNKEKIIEEAVRDAVLEILRP---PRKIDLIEEIKKAEKPYV 125 Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 IL VG NG GKTT I KL+ + G V++AA DTFR+ AI+Q++ A R + + Sbjct: 126 ILFVGFNGSGKTTTIAKLAHWLKKNGFSVVIAASDTFRAGAIEQIEEHAKRIGVKVIKHK 185 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 G+D AA+AY+A + A+A+ +DV++IDTAGR N LM + K+ RV K P+ V Sbjct: 186 YGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTK------PNLV 239 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 + V DA G + Q F+ G+I+TK+D ARGG + + P+ F+G+G+ Sbjct: 240 IFVGDALAGNAIIEQAREFNEAVKIDGVILTKLDADARGGSALSVTYATNAPILFVGIGQ 299 Query: 294 GINDLEPFVAKDFSAVITG 312 G +DL PF + F I G Sbjct: 300 GYDDLIPFDERWFVERILG 318 >gi|284163534|ref|YP_003401813.1| signal recognition particle-docking protein FtsY [Haloterrigena turkmenica DSM 5511] gi|284013189|gb|ADB59140.1| signal recognition particle-docking protein FtsY [Haloterrigena turkmenica DSM 5511] Length = 529 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/261 (35%), Positives = 137/261 (52%), Gaps = 13/261 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWD 106 ELE L+ SD+ + V +I++ L + + S DV E + + + +D Sbjct: 261 ELEMALLSSDVEMGVTDEILDNLRDELIGETRSFTTSTGDVIEEALRDAIYDVISVGQFD 320 Query: 107 FSHR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 F R P I+ GVNGVGKTT I KLS+ + G ++A GDT+R+ A +Q++ Sbjct: 321 FDERIAAAEKPVTIVFTGVNGVGKTTSIAKLSRYFEERGYSTVMANGDTYRAGANEQIEQ 380 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A+ + E G D AA+ Y+ + A+A +DV++ DTAGRLH N LM + K+ R Sbjct: 381 HAEALGTKLITHEQGGDPAAVLYDGVEYAEANDIDVVLGDTAGRLHTNEGLMDQLEKIDR 440 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 V+ P L V +A GQ+A+ + F+ A G I+TK D + GG I I Sbjct: 441 VV------GPDMTLFVDEAVAGQDAVNRAREFNEAAEIDGAILTKADADSNGGAAISIAH 494 Query: 281 THKIPVYFLGVGEGINDLEPF 301 P+ FLGVG+G +DLEPF Sbjct: 495 VTGKPILFLGVGQGYDDLEPF 515 >gi|212374985|pdb|3DM9|B Chain B, Structures And Conformations In Solution Of The Signal Recognition Particle Receptor From The Archaeon Pyrococcus Furiosus Length = 328 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 95/271 (35%), Positives = 146/271 (53%), Gaps = 21/271 (7%) Query: 43 DGVREELEDLLIRSDIGVAVAQ-KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101 D +RE+++ L+ + + + KI+EE + + ++ + R + D+ E I K Sbjct: 74 DALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRI-DLIEEIRK------- 125 Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 + +P+VI VG NG GKTT I KL+ + + G V++AA DTFR+ AI+QL+ Sbjct: 126 ------AEKPYVIXFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEH 179 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 A R + G+D AA+AY+A + A+A+ +DV++IDTAGR N L K+ RV Sbjct: 180 AKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLXDEXKKIARV 239 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 K P+ V+ V DA G + Q F+ G+I+TK+D ARGG + I Sbjct: 240 TK------PNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYV 293 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 P+ F+GVG+G +DL PF + F I G Sbjct: 294 IDAPILFVGVGQGYDDLRPFEKEWFLERIFG 324 >gi|38234113|ref|NP_939880.1| putative cell division protein [Corynebacterium diphtheriae NCTC 13129] gi|38200375|emb|CAE50063.1| Putative cell division protein [Corynebacterium diphtheriae] Length = 495 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 110/287 (38%), Positives = 169/287 (58%), Gaps = 17/287 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---LTKRYAKDVSVQRVLYDVSEL 91 ++S+ LD+ E++E LLI++D+GV + ++++L + +R ++ + R + Sbjct: 217 MLSAGDLDEEAWEDIEALLIQADLGVGITTAVIDQLRQLIAERGVENEAQARAM------ 270 Query: 92 IHKMLMPLSKPF------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 + + L+ KP + +P V+LVVGVNG GKTT GKL++ + G V+L Sbjct: 271 LRECLINACKPELDRSIKAMPYDGKPAVVLVVGVNGTGKTTTTGKLARVLVSLGHSVVLG 330 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 A DTFR+AA DQL+ W R +A V G+D A++A++A DV++IDTAGRL Sbjct: 331 AADTFRAAAADQLETWGRRVNAHTVRGAEGADPASVAFDAVAYGVDSHADVVLIDTAGRL 390 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 HN+S LM +GK+ RV+++ VL VLDATTGQN L Q F V TG+++TK Sbjct: 391 HNSSNLMDQLGKVKRVVEK--KAVVDEVLLVLDATTGQNGLAQARTFSEVVNITGVVLTK 448 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +DGTA+GG + + +PV +G+GEG +DL PF + F + G Sbjct: 449 LDGTAKGGIVFQVQEELGVPVKLVGLGEGSDDLAPFEVEGFVDALLG 495 >gi|218884418|ref|YP_002428800.1| Probable signal recognition particle protein [Desulfurococcus kamchatkensis 1221n] gi|218766034|gb|ACL11433.1| Probable signal recognition particle protein [Desulfurococcus kamchatkensis 1221n] Length = 296 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 101/305 (33%), Positives = 168/305 (55%), Gaps = 16/305 (5%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 +KL + F+ + E + ++SSR +L + + EEL+ L+ +D+ VA+ I EL Sbjct: 1 MFKKLREVFS----RFIETASSLLSSREKLLESI-EELKLNLVANDVAYEVAENIASELT 55 Query: 72 TKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKTTVI 128 + + S + ++ + E++ L+ + S +P ++ +GVNGVGKTT I Sbjct: 56 MRVEEGSIKSREELVKALREILLSYFTGLNSIDLLSLANSRKPLKLVFLGVNGVGKTTTI 115 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 K++ M + GLK ++ A DTFR+ A +QLKI ++RT + GSD AAL Y+A + Sbjct: 116 AKVAVYMRENGLKPLMVAADTFRAGAQEQLKIHSERTGIPVFTGKYGSDPAALVYDAIQY 175 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 + +V +IDTAGR+H + L+ + K++RV K P + V+DA TG +AL Q Sbjct: 176 GLNRGFNVFLIDTAGRMHVDVDLVNELKKIVRVAK------PDVKILVVDALTGNDALEQ 229 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF-S 307 F+ G +++TK+D GG + +V K PV F+GVG+ DL+PF ++ Sbjct: 230 ARFFNEAVGVDCVVVTKVDAYEEGGVPLSLVYILKKPVLFIGVGQDYKDLKPFNPIEYVE 289 Query: 308 AVITG 312 ++TG Sbjct: 290 RILTG 294 >gi|325968430|ref|YP_004244622.1| signal recognition particle-docking protein FtsY [Vulcanisaeta moutnovskia 768-28] gi|323707633|gb|ADY01120.1| signal recognition particle-docking protein FtsY [Vulcanisaeta moutnovskia 768-28] Length = 305 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 101/305 (33%), Positives = 161/305 (52%), Gaps = 23/305 (7%) Query: 16 KLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 KL F S + + IT +S +L + +R+EL L+ SD+ V VA I + ++ Sbjct: 4 KLKNAFKSFTNTIVNSITTTELSEDKLSE-IRDELFMQLVESDVAVDVADAICDAIIN-- 60 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFN----WDF---------SHRPHVILVVGVNG 121 Y + + V R S + + +L ++K FN DF + +P V+L +G NG Sbjct: 61 YLRGIKVPRFGDKESMIRNGILDVMNKLFNDIPDVDFMGEVTRILQNKKPVVLLFLGPNG 120 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT I K++ ++ G + AA DT+R+ AI+QL+ A + + GSD AA+ Sbjct: 121 YGKTTTIAKITYQLMRRGYTAVWAAADTYRAGAIEQLEGHATKLGVRVIKHSYGSDPAAV 180 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 AY+A A+ + +D ++IDTAGR+H + LM + K+ RV + P + + DA Sbjct: 181 AYDAISHAKVRSIDYVMIDTAGRMHTDINLMNELSKIQRVSR------PDLSIFIADALL 234 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 G AL + + GLI+TK+D +GG ++ + K P+YFLGVG+G +DL PF Sbjct: 235 GNEALDIAKYYSKYVRIDGLIVTKVDAYPKGGAILTFLYELKKPIYFLGVGQGYDDLRPF 294 Query: 302 VAKDF 306 +F Sbjct: 295 NKMEF 299 >gi|296117611|ref|ZP_06836195.1| signal recognition particle GTPase [Corynebacterium ammoniagenes DSM 20306] gi|295969342|gb|EFG82583.1| signal recognition particle GTPase [Corynebacterium ammoniagenes DSM 20306] Length = 559 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 110/289 (38%), Positives = 171/289 (59%), Gaps = 11/289 (3%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 +G+ I+S+ LD+ EE+ED LI +D+G V K+ + L K + VS + + Sbjct: 274 QGLMGILSAGDLDEDAWEEIEDTLIMADLGTTVTMKVSDSLRQKIAERGVSSE---AEAR 330 Query: 90 ELIHKMLMPLSKP-FNWDFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143 ++ + L+ + P + PH VI+VVGVNG GKTT GKL++ + G V+ Sbjct: 331 AMLREALIEVGHPEMDRSIKAMPHEGKPAVIMVVGVNGTGKTTTTGKLARVLVSMGHSVL 390 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 L A DTFR+AA DQL+ W R A V + G+D A++A++A + ++VDV+++DTAG Sbjct: 391 LGAADTFRAAAADQLETWGRRVGATTVRGKEGADPASVAFDAVAKGVEQQVDVVLVDTAG 450 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 RLH ++ LM +GK+ RV+++ + VL V+DAT GQN L Q +F V TG+++ Sbjct: 451 RLHTSNDLMDQLGKVKRVVEKK--SSVDEVLLVIDATVGQNGLMQARVFREVVDITGVVL 508 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 TK+DGTA+GG + + +PV +G+GEG + L PF + F + G Sbjct: 509 TKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADHLAPFEVEGFVDALLG 557 >gi|261402774|ref|YP_003246998.1| signal recognition particle-docking protein FtsY [Methanocaldococcus vulcanius M7] gi|261369767|gb|ACX72516.1| signal recognition particle-docking protein FtsY [Methanocaldococcus vulcanius M7] Length = 377 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 91/258 (35%), Positives = 148/258 (57%), Gaps = 16/258 (6%) Query: 56 SDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYD-----VSELIHKMLMPLSKPFNWD 106 +D+ + V +K++E EL+ ++ D V+ + + + ++ + + L + + Sbjct: 105 ADVALDVVEKLIENIKKELVGRKITPDDDVEEITINAIRTAIKNILSQKKIDLEEIIKAN 164 Query: 107 FSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + +P VI+ VG+NG GKTT I KL+ K+ G V+LAAGDTFR+ AI+QL+ A Sbjct: 165 KAKGKPTVIVFVGINGTGKTTTIAKLAYKLKQKGYSVVLAAGDTFRAGAIEQLEQHAKNI 224 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + G+D+AA+ Y+A + A+A+ +DV++ DTAGR N+ LM I K++RV K Sbjct: 225 GVKVIKHKQGADSAAVIYDAIQHAKARGIDVVLADTAGRQATNANLMEEIKKVVRVTK-- 282 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P V+ V DA TG +A+ Q E F+ G+I+TK+D A+GG + I P Sbjct: 283 ----PDLVIFVGDALTGNDAVYQAEEFNRAVNIDGIILTKVDADAKGGAALSIGYAIGKP 338 Query: 286 VYFLGVGEGINDLEPFVA 303 + +LGVG+ +DL F A Sbjct: 339 ILYLGVGQRYSDLVEFNA 356 >gi|14591436|ref|NP_143516.1| signal recognition particle protein [Pyrococcus horikoshii OT3] gi|3258098|dbj|BAA30781.1| 326aa long hypothetical signal recognition particle protein [Pyrococcus horikoshii OT3] Length = 326 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 97/273 (35%), Positives = 150/273 (54%), Gaps = 25/273 (9%) Query: 45 VREELEDLLIRSDIGVAV-----AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99 V +EL+D + R+ +G V +KI+EE + K + ++ ++ + D+ E I K Sbjct: 70 VVDELKDRIKRNLVGKKVRIGTNKEKIIEEAVRKAVLEILTPEKKM-DLLEEIKK----- 123 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 + +P+VIL VG NG GKTT I KL+ + G V++AA DTFR+ AI+QL+ Sbjct: 124 --------AEKPYVILFVGFNGSGKTTTIAKLAHWLKKNGFSVVIAASDTFRAGAIEQLE 175 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 A + + + G+D AA+AY+A + A+A+ +DV++IDTAGR N LM + K+ Sbjct: 176 EHAKKVGVKVIKHKYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIA 235 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 RV K P+ V+ V D+ G + Q F+ G+I+TK+D ARGG + I Sbjct: 236 RVTK------PNLVIFVGDSLAGNAIVEQARQFNQAVKIDGVILTKLDADARGGAALSIS 289 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 P+ F+G+G+G DL PF + F I G Sbjct: 290 HVINAPILFVGIGQGYEDLIPFDERWFVEKILG 322 >gi|220912979|ref|YP_002488288.1| signal recognition particle-docking protein FtsY [Arthrobacter chlorophenolicus A6] gi|219859857|gb|ACL40199.1| signal recognition particle-docking protein FtsY [Arthrobacter chlorophenolicus A6] Length = 400 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 114/283 (40%), Positives = 177/283 (62%), Gaps = 6/283 (2%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLY 86 + +G+ ++SS ++D+ V +E+E+ L+ +D+G ++V+ L + + S + V Sbjct: 114 MGKGLLALLSSDKIDENVWDEVEETLLLADLGTEPTMQLVDALRERVKVLGTRSPEHVKA 173 Query: 87 DVSELIHKMLMP-LSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 + E + K++ P + + N +P V++VVGVNGVGKTT +GKL++ + V+L Sbjct: 174 MLREELIKVVDPTMDRTLNVQRHGDKPAVMMVVGVNGVGKTTTVGKLARVLVAEDKDVIL 233 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 A DTFR+AA +QL W R V S+I G+D A++AYEA K ++VDV++IDTAG Sbjct: 234 GAADTFRAAAAEQLATWGQRVGVPTVKSDIDGADPASVAYEAVKAGIDQEVDVVMIDTAG 293 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 RL N LM +GK+ RV+++L VL VLDATTGQN L Q +F V TG+++ Sbjct: 294 RLQNKVGLMDELGKVKRVVEKL--AEVDEVLLVLDATTGQNGLNQARVFSEVVNITGIVL 351 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TK+DGTA+GG ++ I + +PV +G+GEG +DL PF A+ F Sbjct: 352 TKLDGTAKGGIVVAIQKSLGVPVKLIGLGEGADDLAPFDAEQF 394 >gi|254383300|ref|ZP_04998653.1| signal recognition particle [Streptomyces sp. Mg1] gi|194342198|gb|EDX23164.1| signal recognition particle [Streptomyces sp. Mg1] Length = 412 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 123/318 (38%), Positives = 182/318 (57%), Gaps = 19/318 (5%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V + + +L A + L +G+ ++S LD+ EE+E+ L+ +D+GV Q Sbjct: 103 EVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLIADVGVVPTQ 162 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---------SHRPHVIL 115 ++V+ L R V R D+ L+ + L+ L DF + P V++ Sbjct: 163 ELVDRL---RDRVKVLGTRTPADLRALLKEELLTL---VGTDFDRAVKTEGGADTPGVVM 216 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VVGVNG GKTT GKL++ + G V+L A DTFR+AA DQL+ W DR A V G Sbjct: 217 VVGVNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGDRVGARTVRGPEG 276 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVL 234 D A++AY+A K+ A+ DV++IDTAGRLH + LM +GK+ RV+++ H P VL Sbjct: 277 GDPASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HGPLDEVL 333 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VLDATTGQN L Q +F V TG+++TK+DGTA+GG ++ + +PV +G+GEG Sbjct: 334 LVLDATTGQNGLTQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEG 393 Query: 295 INDLEPFVAKDFSAVITG 312 +DL PF + F + G Sbjct: 394 ADDLAPFEPEAFVDALIG 411 >gi|111023488|ref|YP_706460.1| cell division protein [Rhodococcus jostii RHA1] gi|110823018|gb|ABG98302.1| cell division protein [Rhodococcus jostii RHA1] Length = 467 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 113/273 (41%), Positives = 163/273 (59%), Gaps = 13/273 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 EE+ED L+ +D+G A KIV L + ++ V R D L+ ++L+ +P D Sbjct: 201 EEVEDTLLIADLGSATTTKIVTSLREQMASRSV---RTEADARALLREVLVAELRP-ELD 256 Query: 107 FSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 S R P V+LVVGVNG GKTT GKL++ + G +V+L A DTFR+AA DQL+ Sbjct: 257 RSIRALPHDDHPAVLLVVGVNGTGKTTTTGKLARVLVADGRRVLLGAADTFRAAAADQLQ 316 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 WA+R A+ V + +D AA+A++A + VDV++IDTAGRLH + LM +GK+ Sbjct: 317 TWAERVGAEVVRGKEAADPAAVAFDAVAKGIDNGVDVVLIDTAGRLHTKTGLMDELGKVK 376 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 RV+++ + VL VLDAT GQN L Q +F V TG+++TK+DGTA+GG + + Sbjct: 377 RVIEK--KASVDDVLLVLDATIGQNGLAQARVFAEVVDITGVVLTKLDGTAKGGIVFQVQ 434 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +PV +G+GEG +DL PF F + G Sbjct: 435 HELGVPVKLVGLGEGADDLAPFEPGAFVDALLG 467 >gi|60620671|ref|NP_341888.2| signal recognition particle receptor protein [Sulfolobus solfataricus P2] gi|261601953|gb|ACX91556.1| signal recognition particle-docking protein FtsY [Sulfolobus solfataricus 98/2] Length = 358 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 89/285 (31%), Positives = 163/285 (57%), Gaps = 27/285 (9%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----LTKRYAKDVSVQRVLYD---- 87 I + ++D + EEL L+ SD+ V +KI+E+L + K+ + ++R++ D Sbjct: 81 IKEKDIEDFI-EELRYQLLESDVSFEVTEKILEDLKENIIGKKVKRSDDLERIVKDSLKK 139 Query: 88 -VSELIHK-----MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 ++E+I K +L + K S +P++I+ G+NGVGKTT I K + + GL Sbjct: 140 SITEIITKNNAINVLEEIKK------SPKPYIIIFFGINGVGKTTTIAKFAYMLKKNGLS 193 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 +++A DTFR+AA +QL++ + + G D A++A++A + A+++ +DV++IDT Sbjct: 194 CIISASDTFRAAAQEQLEVHSRNLEIPLIKGRYGGDPASVAFDAIRAAKSRGIDVVLIDT 253 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AGR+H ++ L+ + +++ + K P+ + VLD+ G +AL Q + F G + Sbjct: 254 AGRMHTDTDLVNELKRVVNIAK------PNLKILVLDSLGGNDALEQAKYFENNVGFDLV 307 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 I+TK+D +GG ++ + PV +LG+G+ +DL PF A+ F Sbjct: 308 ILTKVDADVKGGVILSLAYELNKPVGYLGIGQAYDDLIPFNAEWF 352 >gi|227504760|ref|ZP_03934809.1| signal recognition particle GTPase [Corynebacterium striatum ATCC 6940] gi|227198610|gb|EEI78658.1| signal recognition particle GTPase [Corynebacterium striatum ATCC 6940] Length = 559 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 114/290 (39%), Positives = 168/290 (57%), Gaps = 13/290 (4%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 +G+ I+S+ LD+ EE+ED LI +D+G K+ E L K + VS + + Sbjct: 274 QGLLGILSAGDLDEDAWEEIEDTLIMADLGTKSTLKVTESLRDKIAERGVSSEE---EAR 330 Query: 90 ELIHKMLMPLSKPFNWDFS-------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 ++ + L+ P D S +P VI+VVGVNG GKTT GKL++ + G KV Sbjct: 331 AMLRESLIEAGHP-EMDRSIKAMPNEGKPAVIMVVGVNGTGKTTTTGKLARVLVAMGHKV 389 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +L A DTFR+AA DQL+ W R A V + G+D A++A++A + VDV+++DTA Sbjct: 390 LLGAADTFRAAAADQLETWGRRVGATTVRGKEGADPASVAFDAVAAGVDQGVDVVLVDTA 449 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRLH + LM +GK+ RV+++ VL VLDAT GQN L Q +F V TG++ Sbjct: 450 GRLHTSVDLMDQLGKVKRVVEKK--AEVDEVLLVLDATVGQNGLTQARIFREVVDITGVV 507 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +TK+DGTA+GG + + +PV +G+GEG +DL PF + F + G Sbjct: 508 LTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFVDALLG 557 >gi|330834459|ref|YP_004409187.1| signal recognition particle-docking protein FtsY [Metallosphaera cuprina Ar-4] gi|329566598|gb|AEB94703.1| signal recognition particle-docking protein FtsY [Metallosphaera cuprina Ar-4] Length = 378 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 91/285 (31%), Positives = 155/285 (54%), Gaps = 31/285 (10%) Query: 29 KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV 88 +E ++D+I R + L+ D+ + V +KI+E+L K VS + ++ Sbjct: 102 EEDVSDLIDELRFE----------LLEDDVSLEVTEKILEDLKRNLVGKKVSRKE---NL 148 Query: 89 SELIHKMLMP-----LSKPF-------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136 +LIH+ L L K + S +P V++ GVNGVGKTT I K + + Sbjct: 149 EQLIHESLKKSLKDILKKNYIEKDVVETIKTSKKPFVVMFFGVNGVGKTTTIAKFAMLLK 208 Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196 +GL V++AA DTFR+AA +QL + A + V + G D A++A++A + A+++ +D Sbjct: 209 KSGLSVIIAASDTFRAAAQEQLAVHASKLEVPLVKGKYGGDPASVAFDAIQSAKSRGIDA 268 Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256 ++IDTAGR+H + L+ + +++R+ K P+ + VLD+ G +AL+Q E F Sbjct: 269 VLIDTAGRMHTDKDLVEELRRLVRIAK------PNLKVLVLDSLAGNDALKQAEYFEKAV 322 Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 G +I+TK+D A+GG + + PV +LG+G+ + L F Sbjct: 323 GYDFVILTKVDADAKGGIALSLAYELGKPVMYLGMGQDYDSLVKF 367 >gi|226365990|ref|YP_002783773.1| signal recognition particle receptor [Rhodococcus opacus B4] gi|226244480|dbj|BAH54828.1| signal recognition particle receptor [Rhodococcus opacus B4] Length = 474 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 116/275 (42%), Positives = 165/275 (60%), Gaps = 17/275 (6%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 EE+ED L+ +D+G A KIV L + ++ V R D L+ ++L+ +P D Sbjct: 208 EEVEDTLLIADLGSATTTKIVTSLREQMASRSV---RTEADARALLREVLVAELRP-ELD 263 Query: 107 FSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 S R P V+LVVGVNG GKTT GKL++ + G +V+L A DTFR+AA DQL+ Sbjct: 264 RSIRALPHDDHPAVLLVVGVNGTGKTTTTGKLARVLVADGRRVLLGAADTFRAAAADQLQ 323 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 WA+R A+ V + +D AA+A++A + VDV++IDTAGRLH + LM +GK+ Sbjct: 324 TWAERVGAEVVRGKEAADPAAVAFDAVSKGIDNGVDVVLIDTAGRLHTKTGLMDELGKVK 383 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 RV+++ + VL VLDAT GQN L Q +F V TG+++TK+DGTA+GG I Sbjct: 384 RVIEKK--ASVDDVLLVLDATIGQNGLAQARVFAEVVDITGVVLTKLDGTAKGG--IVFQ 439 Query: 280 VTHK--IPVYFLGVGEGINDLEPFVAKDFSAVITG 312 V H+ +PV +G+GEG +DL PF F + G Sbjct: 440 VQHELGVPVKLVGLGEGADDLAPFEPGAFVDALLG 474 >gi|16903158|gb|AAL30433.1|AF439264_1 FtsY NG domain [Haloferax volcanii] Length = 266 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 92/258 (35%), Positives = 138/258 (53%), Gaps = 17/258 (6%) Query: 53 LIRSDIGVAVAQKIVE---ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109 L++SD+ + VA++I+E E L K V L VSE +H L + +DF Sbjct: 3 LLQSDVEMQVAEEILETIREKLIGETRKQVESTGQL--VSEALHDALYEVISVGQFDFDQ 60 Query: 110 R------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 R P ++ G+NGVGKTT I KL+K G +LA GDT+R+ A +Q++ A+ Sbjct: 61 RIAEADKPVTLIFTGINGVGKTTTIAKLAKYFEKQGYSTVLANGDTYRAGANEQIREHAE 120 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + E G D AA+ Y+ + A+A +D+++ DTAGRLH ++ LMA + K+ RV+ Sbjct: 121 ALDKKLIAHEQGGDPAAVIYDGVEYAEAHDIDIVLGDTAGRLHTSNDLMAQLEKIDRVV- 179 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 P L V +A GQ+A+ + F+ A G I+TK D + GG I I Sbjct: 180 -----GPDLTLFVDEAVAGQDAVERARQFNDAAAIDGAILTKADADSNGGAAISIAYVTG 234 Query: 284 IPVYFLGVGEGINDLEPF 301 P+ FLGVG+G + +E F Sbjct: 235 KPILFLGVGQGYDHIEKF 252 >gi|302832455|ref|XP_002947792.1| hypothetical protein VOLCADRAFT_79814 [Volvox carteri f. nagariensis] gi|300267140|gb|EFJ51325.1| hypothetical protein VOLCADRAFT_79814 [Volvox carteri f. nagariensis] Length = 384 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 84/201 (41%), Positives = 111/201 (55%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 RP +L+VGVNG GKTT +GKL+ K G KV L GDTFR+AA +QL W R A Sbjct: 174 RPAAVLIVGVNGAGKTTTVGKLAYKYGKEGAKVFLIPGDTFRAAAAEQLAEWGRRAGATL 233 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 G+ A+ + A D++++DTAGRLH LM + + Sbjct: 234 GTFREGARPQAVIASRACKDPADVYDLVLVDTAGRLHTAYKLMEELQLCKSAVGTALTGQ 293 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L VLD TTG N L Q F+ TGLI+TK+DGTARGG ++ +V +PV F+ Sbjct: 294 PDETLLVLDGTTGLNMLNQAREFNDAVKLTGLILTKLDGTARGGAVVSVVDQLGLPVKFI 353 Query: 290 GVGEGINDLEPFVAKDFSAVI 310 GVGE DL+PF A+ F+ + Sbjct: 354 GVGETAEDLQPFDAEAFAEAL 374 >gi|12045153|ref|NP_072964.1| signal recognition particle-docking protein FtsY [Mycoplasma genitalium G37] gi|255660341|ref|ZP_05405750.1| signal recognition particle-docking protein FtsY [Mycoplasma genitalium G37] gi|1346049|sp|P47539|FTSY_MYCGE RecName: Full=Cell division protein ftsY homolog gi|1045995|gb|AAC71519.1| signal recognition particle-docking protein FtsY [Mycoplasma genitalium G37] gi|166078691|gb|ABY79309.1| signal recognition particle-docking protein FtsY [synthetic Mycoplasma genitalium JCVI-1.0] Length = 346 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 89/270 (32%), Positives = 144/270 (53%), Gaps = 13/270 (4%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV--LYDVSELIHKMLM 97 +D+ +E L + L+ D+G A KI + ++ + + + R+ + ELI ++ Sbjct: 62 NVDEQFKENLFEGLVLLDVGYHAANKICDAIIEQ-----IKLNRITDFQLIKELIIDQII 116 Query: 98 PL---SKPFNWDFSHRPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 K F+ D +P+ V L VGVNGVGKTT + K++ +V+L AGDTFR Sbjct: 117 VYYIQDKLFDTDLIVKPNFTNVYLFVGVNGVGKTTTLAKIADFFIKQNKRVLLVAGDTFR 176 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 + AI+QL WA + D V A+ + K+ K D ++ DT+GRL N L Sbjct: 177 AGAIEQLNQWAKLLNCDIVLPNPKEQTPAVIFRGVKKGIDDKYDFVLCDTSGRLQNKLNL 236 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M + K+ ++++++ P L VLD T GQ L Q ++F+ + TG+++TKMDG+A+ Sbjct: 237 MNELQKIYQIIQKVSGSEPSETLLVLDGTVGQTGLSQAKVFNEFSKLTGIVLTKMDGSAK 296 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GG ++ I +PV +G GE +DL F Sbjct: 297 GGIILAIKDMFNLPVKLIGFGEKTSDLAIF 326 >gi|118786|sp|P27414|DOCK_SULAC RecName: Full=Probable signal recognition particle protein; AltName: Full=Docking protein; AltName: Full=P41 gi|81120|pir||S16482 docking protein - Sulfolobus solfataricus gi|1333819|emb|CAA54643.1| signal recognition particle receptor alpha subunit [Sulfolobus acidocaldarius] gi|3980227|emb|CAA41429.1| docking protein [Sulfolobus solfataricus] Length = 369 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 92/271 (33%), Positives = 147/271 (54%), Gaps = 21/271 (7%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP---- 98 + V EEL L+ SD+ V +KI+E+L K VS + +V E++ L Sbjct: 96 NDVIEELRFQLLDSDVSYEVTEKILEDLKNNLIGKKVSRRE---EVEEIVINTLKKSITE 152 Query: 99 -LSKPFNWDF-------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 L+K D +P VI+ GVNGVGKTT I K+ + L ++AA DTF Sbjct: 153 ILTKNQKTDLIEKIRSSGKKPFVIIFFGVNGVGKTTTIAKVVNMLKKNNLSTIIAASDTF 212 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R+AA +QL A + + + G+D A++A++A A+++ +DV++IDTAGR+H +S Sbjct: 213 RAAAQEQLAYHASKLEVQLIRGKYGADPASVAFDAISFAKSRNIDVVLIDTAGRMHIDSD 272 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 L+ + +++R+ K P + +LD+ G +AL Q F G +I+TK+D A Sbjct: 273 LVEELKRVLRIAK------PDFRILILDSLAGSDALEQARHFENNVGYDAVILTKVDADA 326 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +GG + + K PV ++GVG+ +DL PF Sbjct: 327 KGGIALSLAYELKKPVVYMGVGQNYDDLIPF 357 >gi|1095511|prf||2109236F dpa gene Length = 369 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 92/271 (33%), Positives = 147/271 (54%), Gaps = 21/271 (7%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP---- 98 + V EEL L+ SD+ V +KI+E+L K VS + +V E++ L Sbjct: 96 NDVIEELRFQLLDSDVSYEVTEKILEDLKNNLIGKKVSRRE---EVEEIVINTLKKSITE 152 Query: 99 -LSKPFNWDF-------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 L+K D +P VI+ GVNGVGKTT I K+ + L ++AA DTF Sbjct: 153 ILTKNQKTDLIEKIRSSGKKPFVIIFFGVNGVGKTTTIAKVVNMLKKNNLSTIIAASDTF 212 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R+AA +QL A + + + G+D A++A++A A+++ +DV++IDTAGR+H +S Sbjct: 213 RAAAQEQLAYHASKLEVQLIRGKYGADPASVAFDAISFAKSRNIDVVLIDTAGRMHIDSD 272 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 L+ + +++R+ K P + +LD+ G +AL Q F G +I+TK+D A Sbjct: 273 LVEELKRVLRIAK------PDFRILILDSLAGSDALEQARHFENNVGYDAVILTKVDADA 326 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +GG + + K PV ++GVG+ +DL PF Sbjct: 327 KGGIALSLAYELKKPVVYMGVGQNYDDLIPF 357 >gi|55379684|ref|YP_137534.1| signal recognition particle receptor [Haloarcula marismortui ATCC 43049] gi|55232409|gb|AAV47828.1| signal recognition particle receptor [Haloarcula marismortui ATCC 43049] Length = 429 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 95/264 (35%), Positives = 144/264 (54%), Gaps = 17/264 (6%) Query: 47 EELEDLLIRSDIGVAVAQKI---VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103 ++LE L+ SD+ ++VA +I V+E LT + + +S L V + + + L + Sbjct: 162 DDLELALLSSDVEMSVANEILDGVKENLTGQTRRRLSSTGNL--VRDALRESLYDVINVG 219 Query: 104 NWDFSHR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 +DF R P I+ GVNGVGKTT I KL++ D GL +LA GDT+R+ A +Q Sbjct: 220 QFDFDERVQQADKPVTIVFTGVNGVGKTTSIAKLAQYFEDRGLSTVLANGDTYRAGANEQ 279 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ A+ + E GSD A+ Y+A + A+A +DV++ DTAGRLH + LMA + K Sbjct: 280 LEKHAENLDKKIITHEQGSDPTAVVYDAVEYAKANDIDVVLGDTAGRLHTSDDLMAQLEK 339 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + R + P L V +A GQ+A+ + F+ A G I+TK D +GG I Sbjct: 340 IDRNID------PDMTLFVDEAVAGQDAVNRAREFNDAAEIDGAILTKADADPQGGAAIS 393 Query: 278 IVVTHKIPVYFLGVGEGINDLEPF 301 + P+ FLG G+ +DL+PF Sbjct: 394 VAHVTGKPILFLGTGQDYDDLDPF 417 >gi|303244020|ref|ZP_07330359.1| signal recognition particle-docking protein FtsY [Methanothermococcus okinawensis IH1] gi|302485672|gb|EFL48597.1| signal recognition particle-docking protein FtsY [Methanothermococcus okinawensis IH1] Length = 271 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 82/194 (42%), Positives = 117/194 (60%), Gaps = 6/194 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P VI+ VG+NG GKTT I KL+ K+ + G V+LAAGDTFR+ AI+QL+ A Sbjct: 61 SKEPVVIVFVGINGTGKTTSIAKLAHKLKNKGYSVVLAAGDTFRAGAIEQLEEHAKNIGV 120 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + + G+D+AA+ Y+A + A+A+ +DV++ DTAGR N LM I K++RV K Sbjct: 121 RVIKHQKGADSAAVIYDAIQHAKARGIDVVLADTAGRQATNINLMDEIKKVVRVTK---- 176 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P V+ V D+ G +A+ Q E F+ G+I+TK+D A+GG + I P+ Sbjct: 177 --PDLVVFVGDSLAGNDAINQAEEFNNAVNIDGVILTKVDADAKGGAALSIAYAIGKPIL 234 Query: 288 FLGVGEGINDLEPF 301 FLGVG+ DLE F Sbjct: 235 FLGVGQRYEDLEEF 248 >gi|328885323|emb|CCA58562.1| Signal recognition particle receptor protein FtsY [Streptomyces venezuelae ATCC 10712] Length = 430 Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 122/304 (40%), Positives = 178/304 (58%), Gaps = 13/304 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L A + L +G+ ++S LD+ EE+E+ L+ +D+GVA Q++VE L R Sbjct: 132 RLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLTADVGVAPTQELVERL---RE 188 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKTTVIG 129 V R ++ L+ + L+ L P S P V++VVGVNG GKTT G Sbjct: 189 RVRVLGTRTPEELRGLLREELVALLGPELDRTVHTESPSDVPGVVMVVGVNGTGKTTTTG 248 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL++ + G V+L A DTFR+AA DQL+ W +R A V G D A++AY+A K+ Sbjct: 249 KLARVLVADGKSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAYDAVKEG 308 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQ 248 A+K DV++IDTAGRLH + LM +GK+ RV+++ H P +L VLDATTGQN L Q Sbjct: 309 IAEKADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HGPLDEILLVLDATTGQNGLIQ 365 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 +F V TG+++TK+DGTA+GG ++ + +PV +G+GEG +DL PF F Sbjct: 366 ARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGPDDLAPFEPGAFVD 425 Query: 309 VITG 312 + G Sbjct: 426 ALIG 429 >gi|148508292|gb|ABQ76076.1| signal recognition particle receptor SRalpha [uncultured haloarchaeon] Length = 413 Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 92/264 (34%), Positives = 141/264 (53%), Gaps = 13/264 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWD 106 +LE L+ SD+ + VA++I+ + +K + V V E + L + +D Sbjct: 143 QLEMALLESDVEIQVAEEILGTIRSKMLGETRAQVNTTAALVEEALSDALYEVISVGQYD 202 Query: 107 FSHR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 F R P I+ GVNGVGKTT I KL + + GL V++A GDT+R+ A +Q++ Sbjct: 203 FDSRVESADSPMTIVFTGVNGVGKTTSIAKLVQYLESRGLSVVMANGDTYRAGANEQIRE 262 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A + E G D AA+ Y+A + A+A +DV++ DTAGRLH ++ LMA + K+ R Sbjct: 263 HAKTLDTKLIAHEQGGDPAAVLYDAVEYAEANDIDVVLGDTAGRLHTSNDLMAQLEKIDR 322 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 V+ P L V +A GQ+A+ + + F+ A G ++TK D + GG I I Sbjct: 323 VVN------PDMTLFVDEAVAGQDAVERAKQFNEAAEIDGTVLTKADADSNGGAAISIAY 376 Query: 281 THKIPVYFLGVGEGINDLEPFVAK 304 P+ FLGVG+ +D+E F K Sbjct: 377 VTGKPILFLGVGQEYDDIERFDPK 400 >gi|11499644|ref|NP_070886.1| signal recognition particle receptor (dpa) [Archaeoglobus fulgidus DSM 4304] gi|2648469|gb|AAB89189.1| signal recognition particle receptor (dpa) [Archaeoglobus fulgidus DSM 4304] Length = 340 Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 92/259 (35%), Positives = 137/259 (52%), Gaps = 16/259 (6%) Query: 56 SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSH----- 109 SD+ V I E L ++ + + L D V E + ++ + +DF Sbjct: 80 SDVAFEVVDAISEALKSRLVGRRKKLTEKLSDIVMEELRSIIFEILDENRFDFDEFIKEK 139 Query: 110 ----RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 +P VI VGVNG GKTT I K++ ++ G V+LAAGDTFR+ AI+QL+ A R Sbjct: 140 LKEKKPVVIAFVGVNGTGKTTTIAKVANRLIKQGYSVVLAAGDTFRAGAIEQLEEHAKRL 199 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + GSD AA+ Y+A K A++K +DV++ DTAGR+H L+ + K+ RV K Sbjct: 200 GVKLIKHKHGSDPAAVIYDAIKHAESKGIDVVLADTAGRMHTKKNLLDQLEKIKRVTK-- 257 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P ++ V ++ G +A+ + MF G G I+TK+D +GG I I K P Sbjct: 258 ----PDLIIFVDESIAGNDAVERARMFAETVGIDGSILTKLDADPKGGSAISISYVTKKP 313 Query: 286 VYFLGVGEGINDLEPFVAK 304 V F GVG+ +DL F +K Sbjct: 314 VLFFGVGQEYDDLVKFDSK 332 >gi|320101305|ref|YP_004176897.1| signal recognition particle-docking protein FtsY [Desulfurococcus mucosus DSM 2162] gi|319753657|gb|ADV65415.1| signal recognition particle-docking protein FtsY [Desulfurococcus mucosus DSM 2162] Length = 296 Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 100/297 (33%), Positives = 164/297 (55%), Gaps = 25/297 (8%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 RKL + FA + + + I++SR +L + + EE + L+ SD+ A+ I +L Sbjct: 2 FRKLKEAFA----RFIDTASSILTSREKLLEAI-EEFKLNLVASDVAYEAAEDIAAQL-- 54 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPF------NWDFSHRPHVILVVGVNGVGKTT 126 R ++ V+R D+ E + ++L+ + S +P I+ +GVNGVGKTT Sbjct: 55 SRRVEEGRVKR-REDLVEALREILLGYFTNLGALDLVSLARSRKPFKIVFLGVNGVGKTT 113 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 I K++ M G K ++ A DTFR+ A +QLKI ++RT G D AALAY+A Sbjct: 114 TIAKIAVYMRGNGFKPLMVAADTFRAGAQEQLKIHSERTGIPVFTGRYGWDPAALAYDAV 173 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + + DV +IDTAGR+H + L+ + K++RV+K P+ + V+DA TG +A+ Sbjct: 174 QYGVGRGFDVFLIDTAGRMHVDVDLVNELKKVVRVVK------PNVKILVVDALTGNDAV 227 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI--PVYFLGVGEGINDLEPF 301 Q F+ G G+++TK+D GG +P+ + + + P+ F+GVG+ DL+PF Sbjct: 228 EQARFFNEAVGVDGVVVTKVDAYEEGG--VPLSLAYVLGKPILFVGVGQDYKDLKPF 282 >gi|297619379|ref|YP_003707484.1| signal recognition particle-docking protein FtsY [Methanococcus voltae A3] gi|297378356|gb|ADI36511.1| signal recognition particle-docking protein FtsY [Methanococcus voltae A3] Length = 399 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/235 (36%), Positives = 133/235 (56%), Gaps = 19/235 (8%) Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 D+ ELI N + + P VI+ +G+NG GKTT I KL+ K+ G +++AA Sbjct: 178 DIEELIQ----------NKNKNGEPAVIIFLGINGTGKTTSISKLAYKLKQNGHSIVMAA 227 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 GDTFR+ AI+QL+ A+ + + G+D+AA+ ++A + A+AKK+DV++ DTAGR Sbjct: 228 GDTFRAGAIEQLEEHANNLEVKVIKHQKGADSAAVIFDAIQHAKAKKIDVVLADTAGRQT 287 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 N LM+ I K++RV K P V+ V D+ G +A+ Q E F+ G I+TK Sbjct: 288 TNINLMSEIKKVVRVTK------PDLVVFVGDSLAGNDAINQAEEFNNAVNIDGAILTKT 341 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEKI 321 D A+GG + I + P+ ++GVG+ +DL+ F D ++ EEK+ Sbjct: 342 DADAKGGAALSIAHSIGKPILYMGVGQRYSDLQEF---DVDWMVNKLFSENEEKL 393 >gi|311744094|ref|ZP_07717900.1| cell division protein FtsY [Aeromicrobium marinum DSM 15272] gi|311313224|gb|EFQ83135.1| cell division protein FtsY [Aeromicrobium marinum DSM 15272] Length = 368 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 115/307 (37%), Positives = 178/307 (57%), Gaps = 19/307 (6%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L A ++ L +G+ I+ LD+ E+E+ L+ +D+GV ++V+ L T+ Sbjct: 71 RLRARLARSNSTLGQGLLAILGRSTLDEDAWTEIEETLLAADVGVGPTTELVDRLRTRLR 130 Query: 76 AK---DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-------HVILVVGVNGVGKT 125 + D + RV + + L+ L P + D S R V+LVVGVNG GKT Sbjct: 131 VEGVHDPAAARVA------LREELLALVDP-SLDRSLRSTGADGRPGVVLVVGVNGTGKT 183 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T +G+L++ + V+L A DTFR+AA DQL+ W +R A V G D A++ +EA Sbjct: 184 TTVGRLARVLVAEERTVVLGAADTFRAAAADQLQTWGERVGAGVVRGPEGGDPASVGFEA 243 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 ++ A DV+++DTAGRLH + LM +GK+ RV+++ P VL V+DATTGQN Sbjct: 244 VQRGIADGADVVLVDTAGRLHTKAGLMDELGKVKRVIEKQAPVT--EVLLVIDATTGQNG 301 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L Q +F V TG+++TK+DGTARGG ++ + +PV ++G+GEG +DL PF A++ Sbjct: 302 LTQARVFGEVTDVTGIVLTKLDGTARGGIVVAVQRELGVPVKYVGLGEGPDDLAPFDAEE 361 Query: 306 FSAVITG 312 F + G Sbjct: 362 FVDALLG 368 >gi|240103695|ref|YP_002960004.1| GTP-binding signal recognition particle receptor (SRP alpha, SRP54) (FtsY/SRP54) [Thermococcus gammatolerans EJ3] gi|239911249|gb|ACS34140.1| GTP-binding signal recognition particle receptor (SRP alpha, SRP54) (FtsY/SRP54) [Thermococcus gammatolerans EJ3] Length = 328 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 98/275 (35%), Positives = 152/275 (55%), Gaps = 24/275 (8%) Query: 56 SDIGVAVAQKIVEELLTKRYAKDVSV----QRVLYD-VSELIHKMLMPLSKPFNWDF--- 107 +D+ + V ++ E + K K V + +V+ D V E + ++L P K + Sbjct: 66 ADVALEVVDELRESIKRKLVGKKVKIGTDKAKVIEDAVKEAVLEVLTPPRKINLLEEIRA 125 Query: 108 -SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P+VI+ VG NG GKTT I KL+ + GL V++AA DTFR+ AI+Q++ A R Sbjct: 126 KKEKPYVIVFVGFNGSGKTTTIAKLAHWLKKNGLSVVIAASDTFRAGAIEQVEEHAKRVG 185 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + G+D AA+AY+A + A+A+ +DV+++DTAGR N LM + K++RV K Sbjct: 186 VKVIKHSYGADPAAVAYDAIQHAKARGIDVVLVDTAGRNELNRNLMDEMKKIVRVTK--- 242 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI-- 284 P V+ V D+ G + + Q F+ G+I+TK+D +RGG + I +H I Sbjct: 243 ---PDLVIFVGDSLAGNSIIDQARQFNEAVKIDGVILTKLDADSRGGAALSI--SHAIGA 297 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEE 319 P+ F+GVG+G DL PF K F +I +GEE Sbjct: 298 PILFVGVGQGYEDLRPFDEKWFVNLI-----FGEE 327 >gi|116754856|ref|YP_843974.1| signal recognition particle-docking protein FtsY [Methanosaeta thermophila PT] gi|116666307|gb|ABK15334.1| signal recognition particle-docking protein FtsY [Methanosaeta thermophila PT] Length = 379 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 101/277 (36%), Positives = 154/277 (55%), Gaps = 20/277 (7%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94 II R L++ + LE L+ SD+ + VA++IV + + S +++ D +L+ Sbjct: 101 IIDERDLEEPLWG-LEMALLESDVALPVAEEIVSSVKSSLVG---SKKKIGSDTGDLVES 156 Query: 95 -----MLMPLSKP-FNWD----FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 +L LSK F++D + +P IL VGVNG GKTT I K+++ + + G V+L Sbjct: 157 ALRAALLKVLSKNVFDFDEFIKNTPKPVKILFVGVNGTGKTTSIAKVARYLKERGYSVVL 216 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 AAGDTFR+ AI+QL+ R + + G D AA+ ++A + A+A K DV++ DTAGR Sbjct: 217 AAGDTFRAGAIEQLETHGQRLDLKVIKHKTGGDPAAVIFDAIEYAKAHKKDVVLADTAGR 276 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 LH N LM + K++RV K P ++ V +A G +A+ + +F+ TG I+T Sbjct: 277 LHTNINLMDQMKKIVRVTK------PDMLIFVDEAIAGNDAVERARLFNESVPITGTILT 330 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 K D A+GG I I P+ FLGVG+ DL F Sbjct: 331 KTDADAKGGSAISIAHVTGKPIIFLGVGQDYPDLVKF 367 >gi|289193001|ref|YP_003458942.1| signal recognition particle-docking protein FtsY [Methanocaldococcus sp. FS406-22] gi|288939451|gb|ADC70206.1| signal recognition particle-docking protein FtsY [Methanocaldococcus sp. FS406-22] Length = 400 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/258 (34%), Positives = 149/258 (57%), Gaps = 16/258 (6%) Query: 56 SDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYD-----VSELIHKMLMPLSKPFNWD 106 +D+ + V +K++E EL+ ++ + D +V+ + + + ++ + + + + + Sbjct: 128 ADVALEVVEKLIENIKKELVGRKISPDDNVEEITINAVKNAIKNILSQEKIDIEEIIKKN 187 Query: 107 FSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + +P VI+ VG+NG GKTT I KL+ K+ G V+LAAGDTFR+ AI+QL+ A Sbjct: 188 KAQGKPTVIVFVGINGTGKTTTIAKLAYKLKQKGYSVVLAAGDTFRAGAIEQLEQHAKNI 247 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + G+D+AA+ Y+A + A+A+ +DV++ DTAGR N LM I K++RV K Sbjct: 248 GVKVIKHKQGADSAAVIYDAIQHAKARGIDVVLADTAGRQATNINLMEEIKKVVRVTK-- 305 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P V+ V DA TG +A+ Q E F+ G+I+TK+D A+GG + I P Sbjct: 306 ----PDLVIFVGDALTGNDAVCQAEEFNNAVNIDGIILTKVDADAKGGAALSIGYAIGKP 361 Query: 286 VYFLGVGEGINDLEPFVA 303 + +LGVG+ +DL F A Sbjct: 362 ILYLGVGQRYSDLIEFDA 379 >gi|257076819|ref|ZP_05571180.1| signal recognition particle receptor FtsY [Ferroplasma acidarmanus fer1] Length = 311 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 89/268 (33%), Positives = 150/268 (55%), Gaps = 20/268 (7%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEEL------LTKRY---AKDVSVQRVLYDVSELIH 93 D + +E+ L+ +D+ ++I+E+L L ++ A + ++ V+ DV + + Sbjct: 43 DELESTIEETLLEADVSYDATEEIIEKLKANLGKLKRKIDYPAVEEELKSVVRDVIQHNN 102 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 K + L +P VIL +G+NG GKTT IGKL+ + V+L+A DTFR+ Sbjct: 103 KDAVNL-----LTVEKKPFVILFLGINGTGKTTTIGKLAYYLKSNNKSVVLSASDTFRAG 157 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 AIDQL I A + + + SD A++A++A + A+A+K+D ++ID+AGR+ N L+ Sbjct: 158 AIDQLNILAGNVGVEIIKHDFRSDPASVAFDAIEHAKARKMDYVLIDSAGRMQTNKNLLD 217 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + K+ RV K P + VLDA GQ+ + Q F + +I+TK+D A+GG Sbjct: 218 EMKKIKRVAK------PDMTILVLDAMIGQDVINQALTFSSEINYDSVIVTKLDTDAKGG 271 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +I I K P+ F+G+G+ ++D+ PF Sbjct: 272 SIISISAGIKKPILFVGIGQEMDDIIPF 299 >gi|2130562|gb|AAB58327.1| signal recognition particle receptor alpha subunit [Thermococcus zilligii] Length = 329 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 97/264 (36%), Positives = 144/264 (54%), Gaps = 19/264 (7%) Query: 62 VAQKIVEELLTKRYAKDVSVQ-RVLYDVSELIHK-----MLMPLSKPFNWDF-------S 108 VA ++V+EL K K V + R+ D ++I + +L L+ P D Sbjct: 70 VALEVVDELREKIKGKLVGKKVRIGSDKGKIIEEAVKEAVLEVLTPPRRIDLIEEMRKKE 129 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +P VI VG NG GKTT I KL+ + G V++AA DTFR+ AI+QL+ A R Sbjct: 130 EKPFVIAFVGFNGGGKTTTIAKLAHWLKKQGFSVVVAASDTFRAGAIEQLEEHAKRVGVK 189 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + G+D AA+AY+A + A+A+ +DV++IDTAGR N LM + K++RV K Sbjct: 190 VIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRNELNRNLMDEMKKIVRVTK----- 244 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P V+ V D+ G + + Q F+ G+I+TK+D ARGG + I P+ F Sbjct: 245 -PDLVIFVGDSLAGNSIIEQARQFNEAVRIDGVILTKLDADARGGAALSISHAIGAPILF 303 Query: 289 LGVGEGINDLEPFVAKDFSAVITG 312 +GVG+G +DL+PF + F +I G Sbjct: 304 VGVGQGYDDLKPFDERWFVDLIFG 327 >gi|15668466|ref|NP_247264.1| signal recognition particle, receptor [Methanocaldococcus jannaschii DSM 2661] gi|2500888|sp|Q57739|Y291_METJA RecName: Full=Probable signal recognition particle protein MJ0291 gi|1591013|gb|AAB98276.1| signal recognition particle, receptor [Methanocaldococcus jannaschii DSM 2661] Length = 409 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/257 (35%), Positives = 147/257 (57%), Gaps = 16/257 (6%) Query: 57 DIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYD-----VSELIHKMLMPLSKPFNWDF 107 D+ + V +K++E EL+ ++ + D +V+ + + + ++ + + + + + Sbjct: 138 DVALEVVEKLIENIKNELVGRKISPDDNVEEITINAVKNAIKNILSQEKIDIEEIIKKNK 197 Query: 108 SH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + +P VI+ VG+NG GKTT I KL+ K+ G V+LAAGDTFR+ AI+QL+ A Sbjct: 198 AEGKPTVIVFVGINGTGKTTTIAKLAYKLKQKGYSVVLAAGDTFRAGAIEQLEQHAKNVG 257 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + + G+D+AA+ Y+A + A+A+ +DV++ DTAGR N LM I K++RV K Sbjct: 258 VKVIKHKPGADSAAVIYDAIQHAKARGIDVVLADTAGRQATNVNLMEEIKKVVRVTK--- 314 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P V+ V DA TG +A+ Q E F+ G+I+TK+D A+GG + I P+ Sbjct: 315 ---PDLVIFVGDALTGNDAVYQAEEFNRAVNIDGIILTKVDADAKGGAALSIGYAIGKPI 371 Query: 287 YFLGVGEGINDLEPFVA 303 +LGVG+ DL F A Sbjct: 372 LYLGVGQRYQDLIEFDA 388 >gi|328948953|ref|YP_004366290.1| signal recognition particle-docking protein FtsY [Treponema succinifaciens DSM 2489] gi|328449277|gb|AEB14993.1| signal recognition particle-docking protein FtsY [Treponema succinifaciens DSM 2489] Length = 291 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/262 (35%), Positives = 154/262 (58%), Gaps = 6/262 (2%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLT-KRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFN 104 E+L D LI D+G A +IV+ L + + K S + + ++ ++ K L P+S +P N Sbjct: 26 EDLTDALIEGDLGAKNAVEIVDNLESFCKKEKKFSPEEITVELKNILMKFLKPVSIEPSN 85 Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 + ++ +V+GVNGVGKTT + K++K S+ + V++AA DTFR+AA+DQL + ++ Sbjct: 86 G----KVNIFMVLGVNGVGKTTTVAKMAKLYSEKNVNVIMAAADTFRAAAVDQLSMHGEK 141 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 V ++GSD +A+ ++A +A ++I DTAGRLHN L+ + K+ R+ Sbjct: 142 LKLRVVKHQMGSDPSAVVFDAADACKANNGGLVIADTAGRLHNKENLVNELKKIDRICAS 201 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 + + V+DATTGQNA+RQ E+F+ G +++TK D TA+GG L+ I I Sbjct: 202 KADEGCYKKILVIDATTGQNAVRQAEVFNDAVGIDAVVLTKYDSTAKGGALVSIGKDLNI 261 Query: 285 PVYFLGVGEGINDLEPFVAKDF 306 PV F+ GE +++ F K + Sbjct: 262 PVLFVCTGEKYENIKSFDPKKY 283 >gi|326382862|ref|ZP_08204552.1| signal recognition particle-docking protein FtsY [Gordonia neofelifaecis NRRL B-59395] gi|326198452|gb|EGD55636.1| signal recognition particle-docking protein FtsY [Gordonia neofelifaecis NRRL B-59395] Length = 488 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 116/281 (41%), Positives = 170/281 (60%), Gaps = 17/281 (6%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVA----VAQKIVEELLTK--RYAKDV--SVQRVLY 86 ++ + LD+ EE+ED L+ +D+G A V +++ EEL T R A D +++RVL Sbjct: 211 LLGAGDLDEDSWEEIEDTLVMADLGTAATSTVTERLREELATGKVRSADDARAALKRVL- 269 Query: 87 DVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 + ++ L + + RP V+LVVGVNGVGKTT GKL++ + G +V+L Sbjct: 270 -----VEQLRPDLDRSVKALPHADRPAVVLVVGVNGVGKTTTTGKLARVLVADGRRVLLG 324 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 A DTFR+AA DQL+ W +R A V + G+D A++A++A VDV++IDTAGRL Sbjct: 325 AADTFRAAAADQLQTWGERVGAGIVRGKEGADPASVAFDAVNTGIGDGVDVVLIDTAGRL 384 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 H S LM +GK+ RV+++ VL VLDAT GQN L Q ++F V TG+++TK Sbjct: 385 HTKSGLMDELGKVKRVVEK--KAVVDEVLLVLDATVGQNGLMQAKVFAEVVSLTGVVLTK 442 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +DGTA+GG + I +PV +G+GEG +DL PF + F Sbjct: 443 LDGTAKGGIVFRIQEELGVPVKLVGLGEGADDLAPFEPEAF 483 >gi|281356109|ref|ZP_06242602.1| signal recognition particle protein [Victivallis vadensis ATCC BAA-548] gi|281317478|gb|EFB01499.1| signal recognition particle protein [Victivallis vadensis ATCC BAA-548] Length = 485 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 156/285 (54%), Gaps = 14/285 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSE 90 ++ + D +RE + L+ +D+ + V + +E + T+ +DV SV Q+V+ V++ Sbjct: 22 LTESNIADAMRE-IRLALLDADVNLNVVAEFIEAVKTECVGQDVVKSVTPGQQVVKIVND 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + ++L N F+H+P I++VG++G GKTT GKL+ K+ G KV+L AGD + Sbjct: 81 KLVELLGGGVSELN--FAHKPTAIMLVGLHGSGKTTTAGKLALKLKRDGKKVLLVAGDVY 138 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAIDQL+I S + AA+A A +QA + DV+IIDTAGRL + Sbjct: 139 RPAAIDQLEIIGKEISVPVHAERTSVNVAAIAVNAVEQAGRQGFDVVIIDTAGRLQIDET 198 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 + + +++R+ + + P VL V DA GQ A+ E FH TG I+TK+DG A Sbjct: 199 M---VQELVRIRQAVQ---PDEVLLVADAALGQEAVSVAEHFHRALDLTGFILTKLDGDA 252 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I PV F+G+GE ++ LE F + I G D Sbjct: 253 RGGAALSIRKVTGCPVKFIGLGEKLDSLEVFYPDRMAGRILGMGD 297 >gi|167044181|gb|ABZ08863.1| putative SRP54-type protein, GTPase domain protein [uncultured marine crenarchaeote HF4000_APKG5E24] Length = 464 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 97/280 (34%), Positives = 146/280 (52%), Gaps = 16/280 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLMP 98 D V ELE L+ SD+ V I +L TK V+ + V ++E I M Sbjct: 27 DDVLSELEISLLESDVATEVIDSIKSDLSTKLVGSRVNKKEIEDFVKKSLTENISSMFDD 86 Query: 99 ------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 LS + P++IL VG+NG GKTT I K++ + + V++AA DTFR+ Sbjct: 87 AGSVDILSNIKSKTDPQDPYLILFVGINGTGKTTTIAKIANLLQKNKISVVVAAADTFRA 146 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AI+QL+ ++ + + GSD AA+A++A A++ KVD ++ID+AGR+ N LM Sbjct: 147 GAIEQLREHINKLNLKLIAQNYGSDPAAVAHDALLYAKSHKVDCVLIDSAGRMQTNKNLM 206 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 I K+ +V+ +P + V D+ G +A+ Q FH G I+TK D ARG Sbjct: 207 EQIAKISKVV------SPDLKIFVGDSLAGNDAVSQAREFHKHTTFDGAILTKGDADARG 260 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 G + IV K PV ++G G+G +DLE F + F + G Sbjct: 261 GAALSIVAVTKKPVIYVGTGQGYDDLELFSKEIFLETVFG 300 >gi|150400486|ref|YP_001324252.1| signal recognition particle-docking protein FtsY [Methanococcus aeolicus Nankai-3] gi|150013189|gb|ABR55640.1| signal recognition particle-docking protein FtsY [Methanococcus aeolicus Nankai-3] Length = 383 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/256 (36%), Positives = 142/256 (55%), Gaps = 16/256 (6%) Query: 56 SDIGVAVAQKIVEELLT-----KRYAKD----VSVQRVLYDVSELIHKMLMPLSKPFNWD 106 +D+ V +K++E L K AKD +++ + + E++ + + + K Sbjct: 105 ADVAYEVVEKLIESLRNQLIGIKISAKDDPEEITINALRNAIKEVLSQKEIDIYKLIEEK 164 Query: 107 FSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 S+ P VI+VVG+NG GKTT I KL+ K+ + G V+LAAGDTFR+ AI+QL+ A Sbjct: 165 KSNGEPTVIVVVGINGTGKTTTISKLAYKLMNNGYSVVLAAGDTFRAGAIEQLEEHAKNI 224 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 A + + GSD AA+ Y+A A+A+ + V++ DTAGR N LMA I K++RV Sbjct: 225 GAKVIKHQKGSDGAAVIYDAINHAKARGISVVLADTAGRQTTNINLMAEIKKVVRV---- 280 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P V+ V D+ G +A+ Q E F+ + G+I+TK D A+GG + I P Sbjct: 281 --SNPDLVVFVGDSLAGNDAITQAEEFNNMVNIDGVILTKTDADAKGGAALSIAHAIGKP 338 Query: 286 VYFLGVGEGINDLEPF 301 + FLGVG+ DL F Sbjct: 339 ILFLGVGQRYEDLMEF 354 >gi|262184411|ref|ZP_06043832.1| signal recognition particle receptor [Corynebacterium aurimucosum ATCC 700975] Length = 636 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 116/305 (38%), Positives = 174/305 (57%), Gaps = 15/305 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 KL + + + +G+ I+S+ LDD EE+ED LI +D+G ++ + L K Sbjct: 337 KLRGRLSRSQNAIGQGLMGILSAGDLDDDAWEEIEDTLIMADLGTKSTMQVTDSLRDKIA 396 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-------HRPHVILVVGVNGVGKTTVI 128 + VS + + ++ + L+ + P D S +P VI+VVGVNG GKTT Sbjct: 397 ERGVSSE---AEARAMLREALIEVGHP-EMDRSIKAMPNEGKPAVIMVVGVNGTGKTTTT 452 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL++ + G V+L A DTFR+AA DQL+ W R A V + G+D A++A++A Sbjct: 453 GKLARVLVSMGHNVLLGAADTFRAAAADQLETWGRRVGATTVRGKEGADPASVAFDAVAA 512 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL-KRLDPHAPHSVLQVLDATTGQNALR 247 + VDV+++DTAGRLH + LM +GK+ RV+ K+ D VL VLDAT GQN L Sbjct: 513 GVDQGVDVVLVDTAGRLHTSVDLMDQLGKVKRVVEKKTD---VDEVLLVLDATVGQNGLT 569 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 Q +F V TG+++TK+DGTA+GG + + +PV +G+GEG +DL PF + F Sbjct: 570 QARIFRDVVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFV 629 Query: 308 AVITG 312 + G Sbjct: 630 DALLG 634 >gi|167044477|gb|ABZ09152.1| putative SRP54-type protein, GTPase domain protein [uncultured marine crenarchaeote HF4000_APKG6J21] Length = 498 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 97/280 (34%), Positives = 146/280 (52%), Gaps = 16/280 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLMP 98 D V ELE L+ SD+ V I +L TK V+ + V ++E I M Sbjct: 27 DDVLSELEISLLESDVATEVIDSIKSDLSTKLVGSRVNKKEIEDFVKKSLTENISSMFDD 86 Query: 99 ------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 LS + P++IL VG+NG GKTT I K++ + + V++AA DTFR+ Sbjct: 87 AGSVDILSNIKSKTDPQDPYLILFVGINGTGKTTTIAKIANLLQKNKISVVVAAADTFRA 146 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AI+QL+ ++ + + GSD AA+A++A A++ KVD ++ID+AGR+ N LM Sbjct: 147 GAIEQLREHINKLNLKLIAQNYGSDPAAVAHDALLYAKSHKVDCVLIDSAGRMQTNKNLM 206 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 I K+ +V+ +P + V D+ G +A+ Q FH G I+TK D ARG Sbjct: 207 EQIAKISKVV------SPDLKIFVGDSLAGNDAVSQAREFHKHTTFDGAILTKGDADARG 260 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 G + IV K PV ++G G+G +DLE F + F + G Sbjct: 261 GAALSIVAVTKKPVIYVGTGQGYDDLELFSKEIFLETVFG 300 >gi|110669293|ref|YP_659104.1| signal recognition particle receptor SRalpha [Haloquadratum walsbyi DSM 16790] gi|109627040|emb|CAJ53516.1| signal recognition particle receptor SRalpha [Haloquadratum walsbyi DSM 16790] Length = 413 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 92/264 (34%), Positives = 141/264 (53%), Gaps = 13/264 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWD 106 +LE L+ SD+ + VA++I+ + +K + V V E + L + +D Sbjct: 143 QLEMALLESDVEMQVAEEILGTIRSKMLGETRAQVNTTAALVEEALSDALYEVISVGQYD 202 Query: 107 FSHR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 F R P I+ GVNGVGKTT I KL + + GL V++A GDT+R+ A +Q++ Sbjct: 203 FDSRVESADSPVTIVFTGVNGVGKTTSIAKLVQYLESRGLSVVMANGDTYRAGANEQIRE 262 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A + E G D AA+ Y+A + A+A +DV++ DTAGRLH ++ LMA + K+ R Sbjct: 263 HAKTLDTKLIAHEQGGDPAAVLYDAVEYAEANDIDVVLGDTAGRLHTSNDLMAQLEKIDR 322 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 V+ P L V +A GQ+A+ + + F+ A G ++TK D + GG I I Sbjct: 323 VVN------PDMTLFVDEAVAGQDAVERAKQFNEAAEIDGTVLTKADADSNGGAAISIAY 376 Query: 281 THKIPVYFLGVGEGINDLEPFVAK 304 P+ FLGVG+ +D+E F K Sbjct: 377 VTGKPILFLGVGQEYDDIERFDPK 400 >gi|227833422|ref|YP_002835129.1| signal recognition particle receptor [Corynebacterium aurimucosum ATCC 700975] gi|227454438|gb|ACP33191.1| signal recognition particle receptor [Corynebacterium aurimucosum ATCC 700975] Length = 658 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 116/305 (38%), Positives = 174/305 (57%), Gaps = 15/305 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 KL + + + +G+ I+S+ LDD EE+ED LI +D+G ++ + L K Sbjct: 359 KLRGRLSRSQNAIGQGLMGILSAGDLDDDAWEEIEDTLIMADLGTKSTMQVTDSLRDKIA 418 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-------HRPHVILVVGVNGVGKTTVI 128 + VS + + ++ + L+ + P D S +P VI+VVGVNG GKTT Sbjct: 419 ERGVSSE---AEARAMLREALIEVGHP-EMDRSIKAMPNEGKPAVIMVVGVNGTGKTTTT 474 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL++ + G V+L A DTFR+AA DQL+ W R A V + G+D A++A++A Sbjct: 475 GKLARVLVSMGHNVLLGAADTFRAAAADQLETWGRRVGATTVRGKEGADPASVAFDAVAA 534 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL-KRLDPHAPHSVLQVLDATTGQNALR 247 + VDV+++DTAGRLH + LM +GK+ RV+ K+ D VL VLDAT GQN L Sbjct: 535 GVDQGVDVVLVDTAGRLHTSVDLMDQLGKVKRVVEKKTD---VDEVLLVLDATVGQNGLT 591 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 Q +F V TG+++TK+DGTA+GG + + +PV +G+GEG +DL PF + F Sbjct: 592 QARIFRDVVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFV 651 Query: 308 AVITG 312 + G Sbjct: 652 DALLG 656 >gi|68161019|gb|AAY86941.1| lr0114 [Lactobacillus reuteri] Length = 398 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 86/198 (43%), Positives = 118/198 (59%), Gaps = 14/198 (7%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ--RVLYDVSELIHKMLMPL----SKPFNW 105 +LI SD+G +A K+ +EL ++V +Q + DVS +I + ++ L + N Sbjct: 206 MLIESDVGYDMAMKLSDELR-----EEVKLQNAKSKQDVSNVIIEKMVELYDEAGQDENP 260 Query: 106 DFS---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 D + P VI+ VGVNG GKTT IGK++ G KV+LAA DTFR+ A +QL +WA Sbjct: 261 DLTMTKEGPTVIMFVGVNGAGKTTTIGKMAALFKKQGKKVLLAAADTFRAGATEQLDVWA 320 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 R D V D AA+ ++A K+A+ + D+L +DTAGRL N LM +GKM R+L Sbjct: 321 KRDGVDIVTGPENGDPAAVVFDAVKRAKDENYDILFVDTAGRLQNKVNLMNELGKMKRIL 380 Query: 223 KRLDPHAPHSVLQVLDAT 240 R PHAPH VL VLDAT Sbjct: 381 TREIPHAPHEVLLVLDAT 398 >gi|324997926|ref|ZP_08119038.1| signal recognition particle GTPase [Pseudonocardia sp. P1] Length = 309 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 109/269 (40%), Positives = 159/269 (59%), Gaps = 17/269 (6%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 E++E L+++D+G + Q++ E+L + A+ V R V + +H +L Sbjct: 43 EDVEATLLQADLGPEMTQEVTEQLREQLAARGV---RSAEQVRQTLHDVLTGALDTGQDR 99 Query: 107 FSH------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 H RP V+LVVGVNG GKTT GKL++ + G +V L A DTFR+AA +QL Sbjct: 100 SVHALPHEGRPAVLLVVGVNGTGKTTTTGKLARVLVAGGHRVTLGAADTFRAAAAEQLVT 159 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 W +R+ A V GSD A++A++A K+ VD +++DTAGRLH + LM +GK+ R Sbjct: 160 WGERSGAGVVRGPEGSDPASVAFDAVKRGTDDAVDAVLLDTAGRLHTKTGLMDELGKVKR 219 Query: 221 VLK---RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 V++ R+D VL VLDATTGQN L Q +F V TG+++TK+DGTA+GG + Sbjct: 220 VVEKQARVD-----EVLLVLDATTGQNGLTQARVFGEVVDVTGIVLTKLDGTAKGGIVFR 274 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + +PV +G+GEG +DL PF K F Sbjct: 275 VQRELGVPVKLVGLGEGPDDLAPFEPKAF 303 >gi|213964646|ref|ZP_03392846.1| signal recognition particle GTPase [Corynebacterium amycolatum SK46] gi|213952839|gb|EEB64221.1| signal recognition particle GTPase [Corynebacterium amycolatum SK46] Length = 515 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 112/285 (39%), Positives = 164/285 (57%), Gaps = 13/285 (4%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94 I+ + LD+ EE+ED+L+ +D+G A Q++V++L + ++ VS + L+ + Sbjct: 234 ILGAGDLDEDAWEEVEDILVMADLGAAATQRVVDKLRERIASQKVSTEE---QARALLRE 290 Query: 95 MLMPLSKPFNWDFSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 +L+ KP D S R P VILVVGVNG GKTT GKL++ + G +V+L A Sbjct: 291 VLIEECKP-EMDRSIRALPHEGKPAVILVVGVNGTGKTTTTGKLARVLVAGGHRVVLGAA 349 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DTFR+AA DQL+ W R A+ V G+D A++A+EA DV++IDTAGRLH Sbjct: 350 DTFRAAAADQLETWGRRVGAETVRGAEGADPASIAFEAVAHGIESGADVVLIDTAGRLHT 409 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 LM + K+ RV+++ V+ VLDAT GQN L Q F V TG+ +TK+D Sbjct: 410 KVGLMDQLDKIKRVVEK--KAQVDEVILVLDATVGQNGLLQARTFRDVVDITGVALTKLD 467 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 GTA+GG + + +PV +G+GEG + L PF + F + G Sbjct: 468 GTAKGGIVFQVQNELGVPVKLVGLGEGADHLAPFEPESFVDALLG 512 >gi|258653316|ref|YP_003202472.1| signal recognition particle-docking protein FtsY [Nakamurella multipartita DSM 44233] gi|258556541|gb|ACV79483.1| signal recognition particle-docking protein FtsY [Nakamurella multipartita DSM 44233] Length = 321 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 113/280 (40%), Positives = 166/280 (59%), Gaps = 17/280 (6%) Query: 42 DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS--------VQRVLYD-VSELI 92 DD EE+ED L+ +D+G A A +I E+L A V+ ++RVL + V + Sbjct: 49 DDDSWEEVEDTLLMADLGAAAAAEITEKLRGAVAAHGVTDAASARALLRRVLIEAVDPTM 108 Query: 93 HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 + + L RP V+L+VGVNG GKTT GKL++ + G V+L A DTFR+ Sbjct: 109 DRAVRALP------HDGRPSVLLIVGVNGTGKTTTTGKLARVLVADGRHVVLGAADTFRA 162 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AA DQL+ W +R A V ++ G+D A++A++A K+ A D ++IDTAGRLH + LM Sbjct: 163 AAADQLQTWGERAGAAVVRADAGTDPASVAFDAVKRGIADGADAVLIDTAGRLHTKTGLM 222 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 +GK+ RV+++ VL VLDATTGQN L Q +F V +G+++TK+DGTA+G Sbjct: 223 DELGKVKRVVEK--QAEVDEVLLVLDATTGQNGLVQATVFADVVDISGIVLTKLDGTAKG 280 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 G ++ + T +PV +G+GEG +DL PF F + G Sbjct: 281 GIVVAVQRTLGVPVKLVGLGEGPDDLAPFEPAAFVDALLG 320 >gi|33152972|ref|NP_874325.1| signal recognition particle protein [Haemophilus ducreyi 35000HP] gi|33149197|gb|AAP96714.1| signal recognition particle protein [Haemophilus ducreyi 35000HP] Length = 450 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 102/306 (33%), Positives = 162/306 (52%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + +I RL +D +++ L ++ L+ +D+ + V ++ + ++ K A Sbjct: 2 FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKV--KERA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPF---NWDF---SHRPHVILVVGVNGVGKTTVIGK 130 V V + L E + + L N + S P VIL+ G+ G GKTT +GK Sbjct: 60 LGVEVNKSLTPGQEFLKIVQSELESAMGEANEELNLASQPPAVILMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L+K + + KV++ + D +R AAI QL+ A+ + DF +E +A EA K A Sbjct: 120 LAKFLKERHKKKVLVVSADVYRPAAIKQLQTLAESLNVDFFPTETNQQPTVIAQEALKYA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DVLI+DTAGRLH ++ +MA I ++ ++L P L +DA TGQ+A Sbjct: 180 KLNFFDVLIVDTAGRLHIDTDMMAEIQQLHQLLN------PVETLFTVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF ++ Sbjct: 234 KAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|289548587|ref|YP_003473575.1| signal recognition particle protein [Thermocrinis albus DSM 14484] gi|289182204|gb|ADC89448.1| signal recognition particle protein [Thermocrinis albus DSM 14484] Length = 437 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 101/304 (33%), Positives = 159/304 (52%), Gaps = 20/304 (6%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ----KIVEELLT 72 LT F+ +L+ T ++ ++L+D +R+ + L+ +D+ V + +I E LT Sbjct: 5 LTDRFSKALERLRN--TRKLTEKQLNDILRD-IRMALLEADVDYDVVKTFLKRIRERALT 61 Query: 73 KRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + ++S + VL V E + K+L + + +L VG+ G GKTT +GKL Sbjct: 62 EDLKNNLSPAESVLLTVYEELVKILGETKEDL------KKGTVLFVGLQGTGKTTTVGKL 115 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + G KV L + D R AAI QL+ A+R + +E D +A A K+A+ Sbjct: 116 AYYLKGKGFKVALTSTDVRRPAAILQLQRLAERVEVPYYSAEGEEDPVKIAQIAVKRAKD 175 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + VD L++DTAGRLH + LM + ++ + P +L V DA GQ ALR + Sbjct: 176 EGVDYLLLDTAGRLHIDEELMEELRRIKETVN------PSEILYVADAMQGQEALRAAKT 229 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 FH G TG+++TKMDG ARGG + + +P+ F+GVGE + D+EPF + I Sbjct: 230 FHETVGLTGVVLTKMDGDARGGVALSVREALGVPIKFMGVGEKLEDIEPFYPDRVAQRIL 289 Query: 312 GCLD 315 G D Sbjct: 290 GLGD 293 >gi|225022015|ref|ZP_03711207.1| hypothetical protein CORMATOL_02047 [Corynebacterium matruchotii ATCC 33806] gi|224945212|gb|EEG26421.1| hypothetical protein CORMATOL_02047 [Corynebacterium matruchotii ATCC 33806] Length = 743 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 111/287 (38%), Positives = 169/287 (58%), Gaps = 17/287 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94 ++S+ LDD E++E LI++D+GV + +V+EL + VS + + ++ + Sbjct: 465 MLSAGDLDDDAWEDIETQLIQADLGVKITTNVVDELREMIAERGVSSE---DEARAMLRE 521 Query: 95 MLMPLSKPF------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 L+ KP ++ +P V+LVVGVNG GKTT GKL++ + G KV+L A D Sbjct: 522 CLIAACKPELDRSIKAMPYNGKPAVVLVVGVNGTGKTTTTGKLARVLVSMGHKVLLGAAD 581 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+AA DQL+ W R A V +D A++A++A + DV++IDTAGRLHN+ Sbjct: 582 TFRAAAADQLEAWGRRVGATTVRGAEAADPASVAFDAVSKGVETHADVVLIDTAGRLHNS 641 Query: 209 SILMAGIGKMIRVLKR---LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 + LM + K+ RV+++ +D VL VLDATTGQN L Q + F V TG+++TK Sbjct: 642 TNLMDQLRKVKRVVEKKAVVD-----EVLLVLDATTGQNGLVQAKTFGDVVNITGVVLTK 696 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +DGTA+GG + + +PV +G+GEG +DL PF + F + G Sbjct: 697 LDGTAKGGIVFQVQEDLGVPVKLVGLGEGADDLAPFEVEGFVDALLG 743 >gi|146304394|ref|YP_001191710.1| signal recognition particle-docking protein FtsY [Metallosphaera sedula DSM 5348] gi|145702644|gb|ABP95786.1| signal recognition particle-docking protein FtsY [Metallosphaera sedula DSM 5348] Length = 373 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 95/285 (33%), Positives = 151/285 (52%), Gaps = 31/285 (10%) Query: 29 KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV 88 +E I+D+I EEL L+ D+ + V KI+E+L + VS + ++ Sbjct: 97 EEDISDLI----------EELRIELLEDDVSLEVTDKILEDLKNTLVGQKVSRRE---NI 143 Query: 89 SELIHKMLMP-----LSKPFNW-------DFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136 ELI + L L K + S +P+VI+ GVNGVGKTT I K + + Sbjct: 144 EELIQESLKKSLREILRKNYRERDMIETIKSSKKPYVIVFFGVNGVGKTTTIAKFAMLLR 203 Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196 GL V++AA DTFR+AA +QL A + V + G D A++A++A + A+++ +DV Sbjct: 204 KNGLSVIIAASDTFRAAAQEQLAYHATKLEVPLVKGKYGGDPASVAFDAIQSAKSRGIDV 263 Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256 +++DTAGR+H + L + +++RV K P + VLD+ G +AL+Q E F Sbjct: 264 VLVDTAGRMHTDKDLTEELKRVVRVAK------PDLKILVLDSLAGNDALQQAEYFEKNV 317 Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 G +I+TK+D A+GG + + PV +LG+G+ L F Sbjct: 318 GYDAVILTKVDADAKGGVALSLAYKLGKPVIYLGMGQDYESLIKF 362 >gi|212223740|ref|YP_002306976.1| signal recognition particle GTPase [Thermococcus onnurineus NA1] gi|212008697|gb|ACJ16079.1| signal recognition particle GTPase [Thermococcus onnurineus NA1] Length = 301 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 83/205 (40%), Positives = 118/205 (57%), Gaps = 6/205 (2%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 +P VI VG NG GKTT I KL+ + GL V++AA DTFR+ AI+Q++ A R Sbjct: 101 EEKPFVIAFVGFNGSGKTTTIAKLAHWLKKNGLSVVIAASDTFRAGAIEQVEEHAKRVGV 160 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + G+D AA+AY+A A+A+ +DV++IDTAGR N LM + K++RV K Sbjct: 161 KVIKHSYGADPAAVAYDAIGHAKARGIDVVLIDTAGRNELNRNLMDEMKKIVRVTK---- 216 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P V+ V D+ G + Q + F+ G+I+TK+D ARGG + I P+ Sbjct: 217 --PDLVIFVGDSLAGNAVVEQAKQFNEAVRIDGVILTKLDADARGGAALSISHAIGAPIL 274 Query: 288 FLGVGEGINDLEPFVAKDFSAVITG 312 F+GVG+G +DL+PF K F I G Sbjct: 275 FVGVGQGYDDLKPFDEKWFVERIFG 299 >gi|269955961|ref|YP_003325750.1| signal recognition particle-docking protein FtsY [Xylanimonas cellulosilytica DSM 15894] gi|269304642|gb|ACZ30192.1| signal recognition particle-docking protein FtsY [Xylanimonas cellulosilytica DSM 15894] Length = 388 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 113/273 (41%), Positives = 172/273 (63%), Gaps = 11/273 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKP 102 +ELE+ L+ +D+G A +++E L T+ + V +V+ +L D EL+ + L + Sbjct: 119 DELEETLLLADVGAGPAGELIEALRTRVRVEGVGDPAAVRAMLRD--ELVTLVGPDLDRT 176 Query: 103 FNWDFSH--RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 + + P V+LVVGVNG GKTT +GKL++ + G +V+L A DTFR+AA DQL+ Sbjct: 177 LHTQGAEPGTPGVVLVVGVNGTGKTTTVGKLARVLVADGRQVVLGAADTFRAAAADQLQT 236 Query: 161 WADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 W R V ++ G+D AA+A++A ++ ++ DV+++DTAGRL N + LM +GK+ Sbjct: 237 WGSRVGVPTVRADRDGADPAAVAFDAVREGRSDGADVVLVDTAGRLQNKAGLMDELGKIT 296 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 RV+ R A VL VLDATTGQN L+Q +F VAG TG+++TK+DGTA+GG ++ + Sbjct: 297 RVITRE--AALTEVLLVLDATTGQNGLQQARVFGEVAGVTGIVLTKLDGTAKGGIVVAVQ 354 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +PV +G+GEG +DL PF A+ F I G Sbjct: 355 RELGVPVKLVGLGEGPDDLAPFDAEQFVDGILG 387 >gi|307594172|ref|YP_003900489.1| signal recognition particle-docking protein FtsY [Vulcanisaeta distributa DSM 14429] gi|307549373|gb|ADN49438.1| signal recognition particle-docking protein FtsY [Vulcanisaeta distributa DSM 14429] Length = 305 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 100/305 (32%), Positives = 160/305 (52%), Gaps = 23/305 (7%) Query: 16 KLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 KL F S + + IT +S +L++ +R+EL L+ SD+ V VA I ++ Sbjct: 4 KLKNAFKSLTNTIVNSITTTELSEDKLNE-IRDELFMQLVESDVAVDVADAISNAIVN-- 60 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPF----NWDFS---------HRPHVILVVGVNG 121 Y + + V R S + + ++ +SK F + DF +P V+L +G NG Sbjct: 61 YLRGLKVPRFGDKESVIKNGIIDIMSKLFSDIPDVDFMSEVIRLLQMKKPVVLLFLGPNG 120 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT I K++ ++ G + AA DT+R+ AI+QL+ A + + GSD AA+ Sbjct: 121 YGKTTTIAKITHQLMKRGYTAVWAAADTYRAGAIEQLEGHATKLGVRVIKHGYGSDPAAV 180 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 AY+A A+ + +D ++IDTAGR+H + LM + K+ RV + P + + DA Sbjct: 181 AYDAINHAKVRGIDYVMIDTAGRMHTDINLMNELSKIQRVSR------PDLSIFIADALL 234 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 G AL + + GLI+TK+D +GG ++ + K P+YFLGVG+G +DL PF Sbjct: 235 GNEALDIAKYYSKYVKIDGLIVTKVDAYPKGGAILTFLYELKKPIYFLGVGQGYDDLRPF 294 Query: 302 VAKDF 306 +F Sbjct: 295 SKAEF 299 >gi|206896211|ref|YP_002246863.1| cell division protein FtsY [Coprothermobacter proteolyticus DSM 5265] gi|206738828|gb|ACI17906.1| cell division protein FtsY [Coprothermobacter proteolyticus DSM 5265] Length = 289 Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 89/255 (34%), Positives = 135/255 (52%), Gaps = 15/255 (5%) Query: 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN- 104 EEL LI +D + AQ ++E++ K DV I ++L+ + PF Sbjct: 28 EEELLSKLIMADFSLKKAQALLEQIKEKGNNVDV------------IREVLLSEAPPFEP 75 Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 + P V ++GVNGVGKTT + KL+ + G V++ DTFR+AA DQL +R Sbjct: 76 LRDTSVPSVFFIIGVNGVGKTTTVAKLAHMYAKQGKNVVVVGADTFRAAAQDQLSTLVNR 135 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 +V E GSD+ ++ Y+A + + V ++DTAGR+H + L+ + K+I+V K+ Sbjct: 136 MPVTYVGGERGSDSGSILYKAL--LENPQASVFLVDTAGRIHTSRALIDELSKLIKVGKK 193 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P VL VLD T G RQ F TGL++TKMD TA+GG + I KI Sbjct: 194 FSEEFPQEVLLVLDGTQGIQGYRQAMSFVQGTPITGLVLTKMDSTAKGGMIFSIWDELKI 253 Query: 285 PVYFLGVGEGINDLE 299 PV + G+ ++D++ Sbjct: 254 PVKLVCFGQQLDDID 268 >gi|258511333|ref|YP_003184767.1| signal recognition particle protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478059|gb|ACV58378.1| signal recognition particle protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 479 Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 151/283 (53%), Gaps = 20/283 (7%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSELI 92 +D+ +RE + L+ +D+ V V + V+ + + +DV V +++Y+ EL Sbjct: 27 VDEAMRE-IRRALLAADVNVKVVRDFVDRVRARAVGQDVLKSLTPGQQVVKIVYE--ELT 83 Query: 93 HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 LM S+ P V+++VG+ G GKTT KL+ + +L A D +R Sbjct: 84 E--LMGGSQARIRMAPKPPTVVMLVGLQGAGKTTTAAKLALAFHQQNHRPLLVAADVYRP 141 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AA+DQLK+ + V S G+ A +A + A+ + DV+I+DTAGRLH + LM Sbjct: 142 AAVDQLKVLGAQIDVP-VFSLDGAGAVEIAEAGLRDAERRGADVVIVDTAGRLHIDDALM 200 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 A + M ++L+ PH +L V+DA TGQ+A+ E FH TG+I+TK+DG ARG Sbjct: 201 AELESMKKILE------PHEILLVVDAMTGQDAVHVAEAFHQRLEVTGVILTKLDGDARG 254 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + + P+ F+G+GE I LEPF + ++ I G D Sbjct: 255 GAALTVRAATGCPIKFVGMGEKIEPLEPFHPERMASRILGMGD 297 >gi|327311560|ref|YP_004338457.1| signal recognition particle-docking protein FtsY [Thermoproteus uzoniensis 768-20] gi|326948039|gb|AEA13145.1| signal recognition particle-docking protein FtsY [Thermoproteus uzoniensis 768-20] Length = 311 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 94/289 (32%), Positives = 151/289 (52%), Gaps = 32/289 (11%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEELLTK-------RYA-KDVSVQRVLYDVSELIH 93 V E EDL L+ SD+ V VA ++ L K R+ ++ +V+R +YD Sbjct: 30 VSELAEDLYLDLVESDVAVDVADALISALKAKLVGAKVPRFGDREAAVRRAVYDA----- 84 Query: 94 KMLMPLSKPFNWDFSH---------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 +L + + DF RP V++ +G NG GKTT + K++ GL+ +L Sbjct: 85 -LLSLVGDVQDADFESAVIEAAEQARPVVVMFLGPNGYGKTTTLAKIAYLFKSRGLQSVL 143 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 AA DTFR+ A +QL+ R + + GSD A++AY+A + A++K + +++IDTAGR Sbjct: 144 AAADTFRAGAREQLEEHGKRLGLRVIGGKYGSDPASVAYDAVQHARSKGIPLVLIDTAGR 203 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 +H + LM + K+ RV++ PH + V DA G AL + G++ T Sbjct: 204 MHTDKNLMDELAKIQRVVE------PHFSVFVFDAQLGNEALEIARYYSKHVSIDGMVAT 257 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 K+D +GG ++ + T K P+YFLGVG+ DL F +++ A + G Sbjct: 258 KVDSYPKGGSILTFLYTFKKPIYFLGVGQRYEDLVKFKKEEYIAQLIGL 306 >gi|284174532|ref|ZP_06388501.1| signal recognition particle receptor protein [Sulfolobus solfataricus 98/2] gi|13813490|gb|AAK40678.1| Signal recognition particle protein (docking protein) (srpR) [Sulfolobus solfataricus P2] Length = 266 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 84/268 (31%), Positives = 154/268 (57%), Gaps = 26/268 (9%) Query: 53 LIRSDIGVAVAQKIVEEL----LTKRYAKDVSVQRVLYD-----VSELIHK-----MLMP 98 L+ SD+ V +KI+E+L + K+ + ++R++ D ++E+I K +L Sbjct: 5 LLESDVSFEVTEKILEDLKENIIGKKVKRSDDLERIVKDSLKKSITEIITKNNAINVLEE 64 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 + K S +P++I+ G+NGVGKTT I K + + GL +++A DTFR+AA +QL Sbjct: 65 IKK------SPKPYIIIFFGINGVGKTTTIAKFAYMLKKNGLSCIISASDTFRAAAQEQL 118 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++ + + G D A++A++A + A+++ +DV++IDTAGR+H ++ L+ + ++ Sbjct: 119 EVHSRNLEIPLIKGRYGGDPASVAFDAIRAAKSRGIDVVLIDTAGRMHTDTDLVNELKRV 178 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 + + K P+ + VLD+ G +AL Q + F G +I+TK+D +GG ++ + Sbjct: 179 VNIAK------PNLKILVLDSLGGNDALEQAKYFENNVGFDLVILTKVDADVKGGVILSL 232 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDF 306 PV +LG+G+ +DL PF A+ F Sbjct: 233 AYELNKPVGYLGIGQAYDDLIPFNAEWF 260 >gi|305681342|ref|ZP_07404149.1| signal recognition particle-docking protein FtsY [Corynebacterium matruchotii ATCC 14266] gi|305659547|gb|EFM49047.1| signal recognition particle-docking protein FtsY [Corynebacterium matruchotii ATCC 14266] Length = 755 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 110/287 (38%), Positives = 169/287 (58%), Gaps = 17/287 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94 ++S+ LDD E++E LI++D+GV + +V+EL + VS + + ++ + Sbjct: 477 MLSAGDLDDDAWEDIETQLIQADLGVKITTNVVDELREMIAERGVSSE---DEARAMLRE 533 Query: 95 MLMPLSKPF------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 L+ KP ++ +P V+L+VGVNG GKTT GKL++ + G KV+L A D Sbjct: 534 CLIAACKPELDRSIKAMPYNGKPAVVLIVGVNGTGKTTTTGKLARVLVSMGHKVLLGAAD 593 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+AA DQL+ W R A V +D A++A++A + DV++IDTAGRLHN+ Sbjct: 594 TFRAAAADQLEAWGRRVGATTVRGAEAADPASVAFDAVSKGVETHADVVLIDTAGRLHNS 653 Query: 209 SILMAGIGKMIRVLKR---LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 + LM + K+ RV+++ +D VL VLDATTGQN L Q + F V TG+++TK Sbjct: 654 TNLMDQLRKVKRVVEKKAVVD-----EVLLVLDATTGQNGLVQAKTFGDVVNITGVVLTK 708 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +DGTA+GG + + +PV +G+GEG +DL PF + F + G Sbjct: 709 LDGTAKGGIVFQVQEDLGVPVKLVGLGEGADDLAPFEVEGFVDALLG 755 >gi|227503347|ref|ZP_03933396.1| cell division protein FtsY [Corynebacterium accolens ATCC 49725] gi|227075850|gb|EEI13813.1| cell division protein FtsY [Corynebacterium accolens ATCC 49725] Length = 712 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 109/290 (37%), Positives = 169/290 (58%), Gaps = 13/290 (4%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 +G+ I+S+ LD+ EE+ED LI +D+G K+ + L K + VS + + Sbjct: 427 QGLMGILSAGDLDEDAWEEIEDTLIMADLGTKSTMKVTDSLRDKIAERGVSSEE---EAR 483 Query: 90 ELIHKMLMPLSKPFNWDFSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 ++ + L+ P D S R P +++VVGVNG GKTT GKL++ + V Sbjct: 484 AMLRECLIEACHP-EMDRSIRAMPNDGKPAIVMVVGVNGTGKTTTTGKLARVLVSMDHSV 542 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +L A DTFR+AA DQL+ W R A+ V + G+D A++A++A ++VDV+++DTA Sbjct: 543 LLGAADTFRAAAADQLETWGRRVGAETVRGKEGADPASVAFDAVATGVEQQVDVVLVDTA 602 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRLH ++ LM +GK+ RV+++ VL VLDAT GQN L Q +F V +G++ Sbjct: 603 GRLHTSTDLMDQLGKVKRVVEKK--TEVDEVLLVLDATVGQNGLAQARIFREVVDISGVV 660 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +TK+DGTA+GG + + +PV +G+GEG +DL PF + F + G Sbjct: 661 LTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFVDALLG 710 >gi|254172921|ref|ZP_04879595.1| signal recognition 54 kDa protein [Thermococcus sp. AM4] gi|214033077|gb|EEB73905.1| signal recognition 54 kDa protein [Thermococcus sp. AM4] Length = 448 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 149/283 (52%), Gaps = 24/283 (8%) Query: 45 VREELEDL---LIRSDIGV----AVAQKIVEELLTKRYAKDVS----VQRVLYD-VSELI 92 +RE + D+ LI+SD+ V + ++I E L ++ VS V +++Y+ +++ + Sbjct: 28 IREVVRDIQRALIQSDVNVRLVLQLTKRIQERALNEKPPAGVSPREHVVKIVYEELTKFL 87 Query: 93 HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 K +PL + +P ++L VG+ G GKTT I KL++ + G KV L DT+R Sbjct: 88 GKEAVPL------EIREKPTILLTVGIQGSGKTTTIAKLARHLQKRGYKVGLVCTDTWRP 141 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 A QLK + + + DA LA E + + K VDV+I+DTAGR S L+ Sbjct: 142 GAYYQLKQLVEPYNIEVFGDPNEKDAIKLAREGVEHFREKGVDVIIVDTAGRHKEESGLI 201 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + ++ +K PH V+ V+D T GQ A Q F +I+TK+DG+A+G Sbjct: 202 EEMKQISEAIK------PHEVILVIDGTIGQQAYHQALAFKEATPIGSIIVTKLDGSAKG 255 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 GG + V P+ F+GVGE I+DLEPF K F + + G D Sbjct: 256 GGALSAVAATGAPIKFIGVGEKIDDLEPFDPKRFVSRLLGLGD 298 >gi|60623873|ref|NP_377324.2| signal recognition particle receptor protein [Sulfolobus tokodaii str. 7] Length = 378 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/272 (32%), Positives = 150/272 (55%), Gaps = 21/272 (7%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-----LSK 101 EEL L+ SD+ V +KI+++L K V+ D+ EL+ L L+K Sbjct: 109 EELRYQLLESDVSYEVTEKILDDLKNAIIGKKVTRSE---DLEELVTNSLKKSIEEILTK 165 Query: 102 PFNWDF-------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 D + +P+VI+ GVNGVGKTT I K++ + + +++A DTFR+AA Sbjct: 166 NQRIDLIEEIRKRNKKPYVIVFFGVNGVGKTTTIAKVAYLLKKNKISCIISASDTFRAAA 225 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 +QL A + V + G+D A++A++A A+++ +DV++IDTAGR+H + L++ Sbjct: 226 QEQLAYHASKLEIPIVKGKYGADPASVAFDAINSAKSRNIDVVLIDTAGRMHIDEDLVSE 285 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + +++++ K P + VLD+ G +AL Q + F G +I+TK+D A+GG Sbjct: 286 LKRIVKIAK------PDLRILVLDSLAGNDALEQAKYFENNVGYDAVILTKVDADAKGGV 339 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 ++ + PV +LGVG+ + L PF A+ F Sbjct: 340 ILSLAYELNKPVIYLGVGQDYDSLIPFDAEWF 371 >gi|304313969|ref|YP_003849116.1| signal recognition particle protein [Methanothermobacter marburgensis str. Marburg] gi|302587428|gb|ADL57803.1| predicted signal recognition particle protein [Methanothermobacter marburgensis str. Marburg] Length = 359 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 101/272 (37%), Positives = 152/272 (55%), Gaps = 13/272 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS-ELIHK 94 IS + ++D V ELE L+ SD+ + VA++IVEEL + K V + D + E + K Sbjct: 84 ISEKDVED-VLWELEMALLESDVALEVAERIVEELREELVGKKVKRSTEISDYTREALKK 142 Query: 95 MLMPL-----SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 +M + K +P VI+ VG+NG GKTT I K+++ GL+ ++AA DT Sbjct: 143 AVMDVLSVDGVKIRELAEKRKPLVIMFVGINGTGKTTTIAKVARYFMKMGLEPVMAAADT 202 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+ AI+Q+ AD+ + G+D AA+A++A A+A+ DV++IDTAGR+ N Sbjct: 203 FRAGAIEQIHEHADKLGVKIISHRKGADPAAVAFDAVSHAKAQGKDVVLIDTAGRMQTNV 262 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 LM + K+ RV+K P +L V DA TG +A+ Q F G +I+TK D Sbjct: 263 NLMDEMAKIKRVVK------PDLILFVGDALTGNDAIEQATKFDEAVGIDAVILTKADAD 316 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 ARGG + I + P+ FLG G+G +D+ F Sbjct: 317 ARGGAALSIGYMIRKPIIFLGTGQGYDDIMEF 348 >gi|57640588|ref|YP_183066.1| signal recognition particle GTPase [Thermococcus kodakarensis KOD1] gi|57158912|dbj|BAD84842.1| signal recognition particle GTPase [Thermococcus kodakarensis KOD1] Length = 342 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 93/257 (36%), Positives = 140/257 (54%), Gaps = 11/257 (4%) Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSK----PFNWDFSHRPHVIL 115 A+ +KI E+L+ ++ + +++ + + E I ++L P K +P VI Sbjct: 90 ALREKIKEKLVGRKVRIGTNKGKIIEEALKEAILEILTPEKKIDLLQMIKSKEDKPFVIA 149 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VG NG GKTT I KL+ + G V++AA DTFR+ AI+QL+ A R + + G Sbjct: 150 FVGFNGSGKTTTIAKLAHWLKKNGFSVVIAASDTFRAGAIEQLEEHAKRVGVKVIKHDYG 209 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 +D AA+AY+A + A+A+ +DV++IDTAGR N LM + K+ RV K P V+ Sbjct: 210 ADPAAVAYDAIQHAKARGIDVVLIDTAGRNELNRNLMDEMKKIARVTK------PDLVIF 263 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V D+ G + Q + F+ G+I+TK+D ARGG + I P+ F+GVG+G Sbjct: 264 VGDSLGGNAVVEQAKQFNEAVRIDGVILTKLDADARGGAALSISHAIGAPILFVGVGQGY 323 Query: 296 NDLEPFVAKDFSAVITG 312 DL PF K F I G Sbjct: 324 EDLRPFDEKWFVERIFG 340 >gi|319790268|ref|YP_004151901.1| signal recognition particle protein [Thermovibrio ammonificans HB-1] gi|317114770|gb|ADU97260.1| signal recognition particle protein [Thermovibrio ammonificans HB-1] Length = 448 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 149/289 (51%), Gaps = 22/289 (7%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87 I L+ G+RE ++ L+ +D+ V K + ++ K +V + +++YD Sbjct: 22 IDQETLNKGLRE-IKLALLEADVNYKVVSKFINDIKEKALGAEVVKGVNPAQQLVKIVYD 80 Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 EL+ + +K + +P VIL++G+ G GKTT KL+ + G KV+L + Sbjct: 81 --ELVEALGGEGAK---LELKSKPAVILLIGLQGSGKTTTAAKLANYLKKQGKKVLLTSA 135 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 D +R AA+ QLK D+ E DA +A +A K+A+ + DVLIIDTAGRLH Sbjct: 136 DVYRPAAMLQLKKLGDKIGVPVFLEEDEKDAVKIAKDALKKAKEENYDVLIIDTAGRLHI 195 Query: 208 NSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + +++ KR+ P VL V+DA TGQ ++ + F+ G TG+++TKM Sbjct: 196 DE-------ELLEEAKRIKEETNPDEVLFVIDAMTGQESVNIAKAFNEAVGMTGIVLTKM 248 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 D ARGG + + P+ F GVGE I D +PF ++ I G D Sbjct: 249 DSDARGGVALSVKGVTGKPIKFAGVGEKIEDFQPFYPDRVASRILGMGD 297 >gi|270706059|ref|ZP_06223091.1| cell division protein FtsY-like protein [Haemophilus influenzae HK1212] gi|270315790|gb|EFA27914.1| cell division protein FtsY-like protein [Haemophilus influenzae HK1212] Length = 162 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 71/162 (43%), Positives = 108/162 (66%), Gaps = 1/162 (0%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDF 107 LE+ L+ +DIGV KI++ L K++ +LY ++ + +L P+++P D Sbjct: 1 LEEQLLIADIGVPTTSKIIKNLTEHASRKELQDAELLYQQLKVEMADILEPVARPLEIDS 60 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 + +P+VIL+VGVNGVGKTT IGKL++K G VMLAAGDTFR+AA++QL++W +R Sbjct: 61 TKKPYVILMVGVNGVGKTTTIGKLARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHI 120 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 V GSD+A++ ++A + A A+ +D+LI DTAGRL N + Sbjct: 121 PVVAQSTGSDSASVIFDAMQSAAARNIDILIADTAGRLQNKN 162 >gi|300123716|emb|CBK24988.2| unnamed protein product [Blastocystis hominis] Length = 521 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 100/310 (32%), Positives = 154/310 (49%), Gaps = 24/310 (7%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE------- 68 +L KG S KL+ T +I + + V +E+ + L+ SD+ + + K+ E Sbjct: 5 ELGKGLTSALSKLQ---TSVIIDDNVVNEVIKEISNALLHSDVNLKIVMKLRETIKNRVT 61 Query: 69 -ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTT 126 E K +QR +Y+ EL++ ML P+ +PF R +VI+ VG+ G GKTT Sbjct: 62 IECQAAGVNKHRVIQRAVYE--ELVN-MLSPVEVQPFK-PVRGRSNVIMFVGLQGSGKTT 117 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGK + G + + DTFR+ A DQLK A + F S SD +A + Sbjct: 118 TIGKFAAYYKRKGWRTCMVCADTFRAGAFDQLKQNAVKVKVPFYGSYTESDPVVIAEQGV 177 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNA 245 Q + + +++I+DT+GR L +K++ H P +++ VLD+T GQ A Sbjct: 178 SQFKKEHFEIIIVDTSGRHKQEEGL-------FEEMKQVQSHIHPDNIVFVLDSTIGQAA 230 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 Q + F +I+TK+DG A+GGG + V P+ F G GEG +DLEPF A Sbjct: 231 FDQAQAFQRTVDIGSVIITKLDGNAKGGGALSAVAATGAPIIFTGSGEGFDDLEPFEASS 290 Query: 306 FSAVITGCLD 315 F + + G D Sbjct: 291 FVSRLLGMGD 300 >gi|240104007|ref|YP_002960316.1| signal recognition particle protein Srp54 [Thermococcus gammatolerans EJ3] gi|259511389|sp|C5A233|SRP54_THEGJ RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|239911561|gb|ACS34452.1| Signal recognition particle, subunit SRP54 (srp54) [Thermococcus gammatolerans EJ3] Length = 448 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 150/283 (53%), Gaps = 24/283 (8%) Query: 45 VREELEDL---LIRSDIGV----AVAQKIVEELLTKRYAKDVS----VQRVLYD-VSELI 92 +RE + D+ LI+SD+ V + ++I E L ++ VS V +++Y+ +++L+ Sbjct: 28 IREVVRDIQRALIQSDVNVRLVLQLTKRIQERALNEKPPAGVSPREHVIKIVYEELTKLL 87 Query: 93 HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 K +PL + +P ++L VG+ G GKTT I KL++ + G KV L DT+R Sbjct: 88 GKEAVPL------EIREKPTILLTVGIQGSGKTTTIAKLARHLQKRGYKVGLVCTDTWRP 141 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 A QLK + + + DA LA E + + K VDV+I+DTAGR S L+ Sbjct: 142 GAYYQLKQLVEPYNIEVFGDPGEKDAIKLAREGVEYFKDKGVDVIIVDTAGRHKEESGLI 201 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + ++ +K PH V+ V+D T GQ A Q F +I+TK+DG+A+G Sbjct: 202 EEMKQISEAIK------PHEVILVIDGTIGQQAYHQALAFKEATPIGSIIVTKLDGSAKG 255 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 GG + V P+ F+GVGE I+DLEPF K F + + G D Sbjct: 256 GGALSAVAATGAPIKFIGVGEKIDDLEPFDPKRFVSRLLGLGD 298 >gi|167045397|gb|ABZ10052.1| putative SRP54-type protein, GTPase domain protein [uncultured marine crenarchaeote HF4000_APKG10F15] Length = 559 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 95/280 (33%), Positives = 145/280 (51%), Gaps = 16/280 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLMP 98 D V ELE L+ SD+ V I +L TK V+ + V ++E I M Sbjct: 27 DDVLSELEISLLESDVATEVIDSIKSDLSTKLVGSRVNKKEIEDFVKKSLTENISSMFDD 86 Query: 99 ------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 LS + P++IL VG+NG GKTT + K++ + + V++AA DTFR+ Sbjct: 87 AGSVDILSNIKSKTDPQDPYLILFVGINGTGKTTTVAKIANLLQKNKISVVVAAADTFRA 146 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AI+QL+ ++ + + GSD AA+A++A A++ KVD ++ID+AGR+ N LM Sbjct: 147 GAIEQLREHINKLNLKLIAQNYGSDPAAVAHDALLYAKSHKVDCVLIDSAGRMQTNKNLM 206 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 I K+ +V+ +P + V D+ G +A+ Q FH G I+TK D RG Sbjct: 207 EQIAKISKVV------SPDLKIFVGDSLAGNDAVSQAREFHKHTTFDGAILTKSDADTRG 260 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 G + IV K PV ++G G+G +DLE F + F + G Sbjct: 261 GAALSIVAVTKKPVIYVGTGQGYDDLELFSKEIFLETVFG 300 >gi|306820620|ref|ZP_07454249.1| signal recognition particle protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551351|gb|EFM39313.1| signal recognition particle protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 443 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/268 (34%), Positives = 140/268 (52%), Gaps = 12/268 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + V ++ + ++V Q+V+ V++ + +++ + N Sbjct: 39 LLEADVNYKVVKDFVAKVKERSVGEEVMKSLTPGQQVIKIVNDELKELMGSVQSKINIS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P VIL+ G+ G GKTT GKL+ + G ML A D +R AAI QL+I +D+ A Sbjct: 98 SKPPTVILMSGLQGAGKTTTTGKLAYHLKSQGKNPMLVACDVYRPAAITQLQILSDKVGA 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 F E + +A A + A+ DV+IIDTAGRLH + LM + K I+ R Sbjct: 158 KFYSEEGNKNPVTIAQNAVESAKTLGFDVVIIDTAGRLHIDEELMQEL-KNIKSTVR--- 213 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+DA TGQ+ + V+ F G G+I++K+DG RGG + I P+ Sbjct: 214 --PSEILLVVDAMTGQDTVNIVKSFDEALGIDGVILSKLDGDTRGGAALSIRAVTNKPIK 271 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F +GE INDLEPF ++ I G D Sbjct: 272 FAAIGEKINDLEPFYPDRIASRILGMGD 299 >gi|16081627|ref|NP_393991.1| signal recognition particle protein Srp54 [Thermoplasma acidophilum DSM 1728] gi|12230635|sp|Q9HKT0|SRP54_THEAC RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|10639683|emb|CAC11655.1| probable signal recognition particle protein [Thermoplasma acidophilum] Length = 456 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 104/301 (34%), Positives = 159/301 (52%), Gaps = 20/301 (6%) Query: 23 STSLKLKEGITDIISSRRLD-DGVRE---ELEDLLIRSDIGVAVAQKIVEEL----LTKR 74 S S L+E I I S +D + V+E +L+ +L+++D+ V ++ +E+ L ++ Sbjct: 5 SFSASLRETIRKITGSSYIDKETVKEISKDLQRILLKADVNVKTVLQVTKEMERRALEEK 64 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 ++ Q Y V + ++L L +P N +P I++VG+ G GKTT GKL++ Sbjct: 65 PPAGMAHQD--YMVRIIYEELLKILGEPSNVKL--KPQTIMLVGLYGNGKTTTAGKLARF 120 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 + GL L A D R AA DQLK A +A F + D L +Q K V Sbjct: 121 FAKKGLNSGLIAADVHRYAAYDQLKQIASEVNAKFYGDQSEKDPVRLIKHGLEQL--KDV 178 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 V IIDT+GR ++ L I ++ + AP VL ++DAT GQ A + + F+ Sbjct: 179 AVKIIDTSGRDSMDAELFDEIRRIKEAV------APDEVLMIIDATMGQQAGPEAKAFND 232 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 G TG+I+TKMDGTA+GGG + V +P+YF+G GE ++DLE F K F + + G Sbjct: 233 AIGVTGIIITKMDGTAKGGGALSAVAEIHVPIYFIGTGEHMDDLEVFDPKKFLSRLLGLG 292 Query: 315 D 315 D Sbjct: 293 D 293 >gi|167044950|gb|ABZ09615.1| putative SRP54-type protein, GTPase domain protein [uncultured marine crenarchaeote HF4000_APKG8G2] Length = 605 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/280 (34%), Positives = 145/280 (51%), Gaps = 16/280 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLMP 98 D V ELE L+ SD+ V I +L TK V+ + V ++E I M Sbjct: 27 DDVLSELEISLLESDVATEVIDSIKSDLSTKLVGSRVNKKEIEDFVKKSLTENISSMFDD 86 Query: 99 ------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 LS + P++IL VG+NG GKTT I K++ + + V++AA DTFR+ Sbjct: 87 AGSVDILSNIKSKTDPQDPYLILFVGINGTGKTTTIAKIANLLQKNKISVVVAAADTFRA 146 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AI+QL+ ++ + + GSD AA+A++A A++ KVD ++ID+AGR+ N LM Sbjct: 147 GAIEQLREHINKLNLKLIAQNYGSDPAAVAHDALLYAKSHKVDCVLIDSAGRMQTNKNLM 206 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 I K+ +V+ +P + V D+ G +A+ Q FH G I+TK D RG Sbjct: 207 EQIAKISKVV------SPDLKIFVGDSLAGNDAVSQAREFHKHTTFDGAILTKSDADTRG 260 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 G + IV K PV ++G G+G +DLE F + F + G Sbjct: 261 GAALSIVAVTKKPVIYVGTGQGYDDLELFSKEIFLETVFG 300 >gi|302537178|ref|ZP_07289520.1| signal recognition particle-docking protein FtsY [Streptomyces sp. C] gi|302446073|gb|EFL17889.1| signal recognition particle-docking protein FtsY [Streptomyces sp. C] Length = 407 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 120/307 (39%), Positives = 177/307 (57%), Gaps = 19/307 (6%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L A + L +G+ ++S LD+ EE+E+ L+ +D+GVA Q++VE L + Sbjct: 109 RLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLIADVGVAPTQELVERL--RER 166 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---------SHRPHVILVVGVNGVGKTT 126 K + + +EL + L DF + P V++VVGVNG GKTT Sbjct: 167 VKVLGTR----TPAELRTLLKEELLTLVGTDFDRAVKTESAADTPGVVMVVGVNGTGKTT 222 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 GKL++ + G V+L A DTFR+AA DQL+ W +R A V G D A++AY+A Sbjct: 223 TTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAYDAV 282 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNA 245 K+ A+ DV++IDTAGRLH + LM +GK+ RV+++ H P VL VLDATTGQN Sbjct: 283 KEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HGPLDEVLLVLDATTGQNG 339 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L Q +F V TG+++TK+DGTA+GG ++ + +PV +G+GEG +DL PF + Sbjct: 340 LTQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGPDDLAPFEPEA 399 Query: 306 FSAVITG 312 F + G Sbjct: 400 FVDALIG 406 >gi|222445744|ref|ZP_03608259.1| hypothetical protein METSMIALI_01386 [Methanobrevibacter smithii DSM 2375] gi|222435309|gb|EEE42474.1| hypothetical protein METSMIALI_01386 [Methanobrevibacter smithii DSM 2375] Length = 480 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 92/278 (33%), Positives = 155/278 (55%), Gaps = 17/278 (6%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYD---- 87 IS + L+D + ELE L+ D+ + VA +V+ +L+ ++ + + Y+ Sbjct: 190 ISEKHLED-ILWELEMGLLEGDVAMEVASAVVDSVKDDLVGRKIKRSNDITEYTYNALRN 248 Query: 88 -VSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 V+E+I +++ + P V++ VG+NG GKTT IGKL+ G ++A Sbjct: 249 AVAEIIDIPGKSMTEMIEAKKAQGEPLVVMFVGINGTGKTTTIGKLANYYLKKGYTPVIA 308 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 A DTFR+ AI+Q+ AD+ + + GSD AA+A++A + A+A+ ++++IDTAGR+ Sbjct: 309 AADTFRAGAIEQVNYHADKVGVKLIKHQKGSDPAAVAFDAVEHAKAQGKELVLIDTAGRM 368 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 N+ LM + K+ RV K P V+ V DA TG +A +Q F+ G+I+TK Sbjct: 369 QTNTNLMDEMKKIKRVAK------PDLVVFVGDALTGNDATQQASKFNEAIDLDGVILTK 422 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 D ++GG + I K P+ FLG+G+G +D++ + A Sbjct: 423 ADADSKGGASLSIGYVIKKPILFLGMGQGYDDIKEYDA 460 >gi|322368143|ref|ZP_08042712.1| signal recognition particle-docking protein FtsY [Haladaptatus paucihalophilus DX253] gi|320552159|gb|EFW93804.1| signal recognition particle-docking protein FtsY [Haladaptatus paucihalophilus DX253] Length = 372 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 89/266 (33%), Positives = 143/266 (53%), Gaps = 23/266 (8%) Query: 48 ELEDLLIRSDIGVAVAQKIVEEL------LTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101 ELE L+ SD+ ++VAQ++++ + T++++ + V + + L+ + Sbjct: 101 ELEMALLESDVEMSVAQEMLDGIRNDLVGATRKFSAETGDV-----VEDALRDSLLSVIS 155 Query: 102 PFNWDFSHR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 +DF R P VI+ GVNGVGKTT I KLS+ + G ++A GDT+R+ A Sbjct: 156 VGQFDFDQRVAEADKPLVIIFTGVNGVGKTTSIAKLSRYFEERGYSSVMANGDTYRAGAN 215 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 Q++ AD + E G D AA+ Y+A + A A +D+++ DTAGRLH + LM + Sbjct: 216 QQIREHADALDTKLIAHEQGGDPAAVIYDAVEYADAHDIDIVLGDTAGRLHTSEGLMDQL 275 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 K+ RV+ P + V +A GQ+A+++ + F A G I+TK D ++GG Sbjct: 276 EKIGRVVD------PDMTIFVDEAVAGQDAVQRAKEFDEAAEIDGSILTKADADSKGGAA 329 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPF 301 I I P+ FLG G+G +D+E F Sbjct: 330 ISISHVTGKPILFLGTGQGYDDIEQF 355 >gi|148642761|ref|YP_001273274.1| signal recognition particle GTPase SRP54 [Methanobrevibacter smithii ATCC 35061] gi|148551778|gb|ABQ86906.1| signal recognition particle GTPase SRP54 [Methanobrevibacter smithii ATCC 35061] Length = 470 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 92/278 (33%), Positives = 155/278 (55%), Gaps = 17/278 (6%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYD---- 87 IS + L+D + ELE L+ D+ + VA +V+ +L+ ++ + + Y+ Sbjct: 180 ISEKHLED-ILWELEMGLLEGDVAMEVASAVVDSVKDDLVGRKIKRSNDITEYTYNALRN 238 Query: 88 -VSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 V+E+I +++ + P V++ VG+NG GKTT IGKL+ G ++A Sbjct: 239 AVAEIIDIPGKSMTEMIEAKKAQGEPLVVMFVGINGTGKTTTIGKLANYYLKKGYTPVIA 298 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 A DTFR+ AI+Q+ AD+ + + GSD AA+A++A + A+A+ ++++IDTAGR+ Sbjct: 299 AADTFRAGAIEQVNYHADKVGVKLIKHQKGSDPAAVAFDAVEHAKAQGKELVLIDTAGRM 358 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 N+ LM + K+ RV K P V+ V DA TG +A +Q F+ G+I+TK Sbjct: 359 QTNTNLMDEMKKIKRVAK------PDLVVFVGDALTGNDATQQASKFNEAIDLDGVILTK 412 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 D ++GG + I K P+ FLG+G+G +D++ + A Sbjct: 413 ADADSKGGASLSIGYVIKKPILFLGMGQGYDDIKEYDA 450 >gi|261349709|ref|ZP_05975126.1| putative signal recognition particle protein [Methanobrevibacter smithii DSM 2374] gi|288861664|gb|EFC93962.1| putative signal recognition particle protein [Methanobrevibacter smithii DSM 2374] Length = 470 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 92/278 (33%), Positives = 155/278 (55%), Gaps = 17/278 (6%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYD---- 87 IS + L+D + ELE L+ D+ + VA +V+ +L+ ++ + + Y+ Sbjct: 180 ISEKHLED-ILWELEMGLLEGDVAMEVASAVVDSVKDDLVGRKIKRSNDITEYTYNALRN 238 Query: 88 -VSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 V+E+I +++ + P V++ VG+NG GKTT IGKL+ G ++A Sbjct: 239 AVAEIIDIPGKSMTEMIEAKKAQGEPLVVMFVGINGTGKTTTIGKLANYYLKKGYTPVIA 298 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 A DTFR+ AI+Q+ AD+ + + GSD AA+A++A + A+A+ ++++IDTAGR+ Sbjct: 299 AADTFRAGAIEQVNYHADKVGVKLIKHQKGSDPAAVAFDAVEHAKAQGKELVLIDTAGRM 358 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 N+ LM + K+ RV K P V+ V DA TG +A +Q F+ G+I+TK Sbjct: 359 QTNTNLMDEMKKIKRVAK------PDLVVFVGDALTGNDATQQASKFNEAIDLDGVILTK 412 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 D ++GG + I K P+ FLG+G+G +D++ + A Sbjct: 413 ADADSKGGASLSIGYVIKKPILFLGMGQGYDDIKEYDA 450 >gi|108864006|gb|ABG22369.1| Signal recognition particle 54 kDa protein, chloroplast precursor, putative, expressed [Oryza sativa Japonica Group] Length = 482 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 105/312 (33%), Positives = 157/312 (50%), Gaps = 29/312 (9%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLT 72 +LT G S KL+ TD ++ D + E + D+ L+ +D+ + V + +E + Sbjct: 4 QLTTGLESAWNKLRG--TDQLTK----DNIAEPMRDIRRALLEADVSLPVVRSFIESVTE 57 Query: 73 KRYAKDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVG 123 K DV + +V+ D EL+ M +S + F+ P VIL+ G+ GVG Sbjct: 58 KAVGTDVIRGVKPEQQLVKVVND--ELVQLMGGEVS---DLVFAKTAPTVILLAGLQGVG 112 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTTV KL+ + G ML A D +R AAIDQL I + + + +A Sbjct: 113 KTTVCAKLAYYLKKMGKSCMLIAADVYRPAAIDQLTILGKQVGVPVYSEGTEAKPSQIAK 172 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 K+A++KK DV+I+DTAGRL + +M+ + ++ R + P VL V+DA TGQ Sbjct: 173 NGIKEAKSKKTDVIIVDTAGRLQVDKAMMSELKEVKRAVN------PTEVLLVVDAMTGQ 226 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 A V F+ G TG I+TK+DG +RGG + I P+ F+G GE + DLEPF Sbjct: 227 EAASLVSTFNVEIGITGAILTKLDGDSRGGAALSIKEVSGKPIKFVGRGERMEDLEPFYP 286 Query: 304 KDFSAVITGCLD 315 + I G D Sbjct: 287 DRMAQRILGMGD 298 >gi|327310166|ref|YP_004337063.1| GTP-binding signal recognition particle SRP54 [Thermoproteus uzoniensis 768-20] gi|326946645|gb|AEA11751.1| GTP-binding signal recognition particle SRP54, G- domain protein [Thermoproteus uzoniensis 768-20] Length = 437 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 102/307 (33%), Positives = 162/307 (52%), Gaps = 17/307 (5%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV----AVAQKIVEE 69 +R LT+ F+ K++ G+ + I + L + + EL+ L+++D+ + A V Sbjct: 1 MRPLTELFSKLVEKIR-GV-EYIDEQTLQE-ISRELQRSLLKADVPLDMVRAFTDTAVRR 57 Query: 70 LLTKRYAKDVSVQR-VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + +R + V+ V+Y + + + K+L ++P + RP+VI+++GV G GKTT Sbjct: 58 IREERPPPGIPVKDFVIYVIYQELVKLLGGEAEP-DLKLPKRPYVIMLLGVEGSGKTTTA 116 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 K++ GLKV + DT R AA DQLK A+R A F G+DA +A +Q Sbjct: 117 AKIALFYIKRGLKVGVVETDTIRPAAYDQLKQLAERVGARFYGERDGNDAVGIARRGLEQ 176 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 K VD++++DTAGR N L+ + + +K P V+ V+DAT G+ A Q Sbjct: 177 M--KGVDLVLVDTAGRHKNEQSLLEEVKAIYDAIK------PDEVMLVVDATVGRQAAAQ 228 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 E F + +TKMD TARGGG + V V F+GVGEG++++EPF + F A Sbjct: 229 AEAFMKYVPIHSVAITKMDSTARGGGALAAVAKTGARVKFIGVGEGVDEIEPFSPRKFVA 288 Query: 309 VITGCLD 315 + G D Sbjct: 289 RVLGMGD 295 >gi|156937833|ref|YP_001435629.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ignicoccus hospitalis KIN4/I] gi|156566817|gb|ABU82222.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ignicoccus hospitalis KIN4/I] Length = 442 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 95/273 (34%), Positives = 144/273 (52%), Gaps = 21/273 (7%) Query: 47 EELEDLLIRSDIGV----AVAQKIVEELLTKRYA-----KDVSVQRVLYDVSELIHKMLM 97 +EL+ LI+SD+ V + ++I E L +R +D V+ V +++ L Sbjct: 28 KELQKTLIKSDVNVKLVLQLTKRIRERALKERPPPGASRRDWFVKIVYEELANLFGGDKE 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P KP P VI++VGV G GKTT GKL++ G +V L A DT+R A DQ Sbjct: 88 PELKP-----PKVPWVIMMVGVQGSGKTTTAGKLARFYKVRGYRVALVAADTYRPGAKDQ 142 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ A+R F +E G DA +A + A+++ +++I+DTAGR N + L+ + + Sbjct: 143 LRQLAERAKVLF-YTEPGDDAVGIAKRGVEWAKSQGAEIIIVDTAGRHKNEAELLKEMKE 201 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 M +K P V+ V+DA+ GQ A E FH +++TK+DGTA+GGG + Sbjct: 202 MSEAIK------PDEVMLVIDASIGQQAKALAEAFHKTTPIGSIVVTKLDGTAKGGGALS 255 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 V + F+G GE + +LEPF K F A I Sbjct: 256 AVAVTGATIKFVGTGEKLEELEPFKPKKFVARI 288 >gi|218185265|gb|EEC67692.1| hypothetical protein OsI_35151 [Oryza sativa Indica Group] Length = 557 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 105/310 (33%), Positives = 158/310 (50%), Gaps = 25/310 (8%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLT 72 +LT G S KL+ TD ++ D + E + D+ L+ +D+ + V + +E + Sbjct: 79 QLTTGLESAWNKLRG--TDQLTK----DNIAEPMRDIRRALLEADVSLPVVRSFIESVTE 132 Query: 73 KRYAKDV-----SVQRVLYDVS-ELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKT 125 K DV Q+++ V+ EL+ M +S + F+ P VIL+ G+ GVGKT Sbjct: 133 KAVGTDVIRGVKPEQQLVKVVNDELVQLMGGEVS---DLVFAKTAPTVILLAGLQGVGKT 189 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 TV KL+ + G ML A D +R AAIDQL I + + + +A Sbjct: 190 TVCAKLAYYLKKMGKSCMLIAADVYRPAAIDQLTILGKQVGVPVYSEGTEAKPSQIAKNG 249 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 K+A++KK DV+I+DTAGRL + +M+ + ++ R + P VL V+DA TGQ A Sbjct: 250 IKEAKSKKTDVIIVDTAGRLQVDKAMMSELKEVKRAVN------PTEVLLVVDAMTGQEA 303 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 V F+ G TG I+TK+DG +RGG + I P+ F+G GE + DLEPF Sbjct: 304 ASLVSTFNVEIGITGAILTKLDGDSRGGAALSIKEVSGKPIKFVGRGERMEDLEPFYPDR 363 Query: 306 FSAVITGCLD 315 + I G D Sbjct: 364 MAQRILGMGD 373 >gi|126179908|ref|YP_001047873.1| signal recognition particle-docking protein FtsY [Methanoculleus marisnigri JR1] gi|125862702|gb|ABN57891.1| signal recognition particle-docking protein FtsY [Methanoculleus marisnigri JR1] Length = 354 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 91/264 (34%), Positives = 146/264 (55%), Gaps = 20/264 (7%) Query: 48 ELEDLLIRSDIGVAVAQKIVEEL---LTKRYAK-DVSVQRVLYDVSELIHKMLMPLSKPF 103 ELE +L+ +D+ + V +I+ + L R+ K SV ++ VS L + L + Sbjct: 87 ELEMVLLENDVALPVTDEIIARMRRDLVGRHRKIGASVDDLV--VSTLRSALCGVLGE-- 142 Query: 104 NWDFS------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 D S RP IL GVNG GKTT + K+ + + G V++ AGDTFR+ AI+Q Sbjct: 143 GLDLSRYIREHERPVKILFTGVNGTGKTTTVAKVGQYLQTNGFTVVIGAGDTFRAGAIEQ 202 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 ++ ADR + + G+D +A+ ++A + A+A +DV++ DTAGR HN + LM + K Sbjct: 203 IRTHADRLGIKTIQHQAGADPSAVLFDAVQYAKAHDIDVVLADTAGRFHNRANLMNQLDK 262 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + RV+K P V+ V +A G +A+ + + F+ GT +++TK D +GG I Sbjct: 263 IRRVMK------PDLVVYVDEAVAGNDAVIRADEFNKAVGTDAVVLTKADMDPKGGAAIS 316 Query: 278 IVVTHKIPVYFLGVGEGINDLEPF 301 + T P+ FLG G+G +D+ PF Sbjct: 317 VAHTVGKPILFLGTGQGYDDIVPF 340 >gi|115484239|ref|NP_001065781.1| Os11g0153700 [Oryza sativa Japonica Group] gi|62701662|gb|AAX92735.1| signal recognition particle protein, putative [Oryza sativa Japonica Group] gi|108864005|gb|ABG22368.1| Signal recognition particle 54 kDa protein, chloroplast precursor, putative, expressed [Oryza sativa Japonica Group] gi|113644485|dbj|BAF27626.1| Os11g0153700 [Oryza sativa Japonica Group] gi|215765043|dbj|BAG86740.1| unnamed protein product [Oryza sativa Japonica Group] gi|222615534|gb|EEE51666.1| hypothetical protein OsJ_33002 [Oryza sativa Japonica Group] Length = 557 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 105/310 (33%), Positives = 158/310 (50%), Gaps = 25/310 (8%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLT 72 +LT G S KL+ TD ++ D + E + D+ L+ +D+ + V + +E + Sbjct: 79 QLTTGLESAWNKLRG--TDQLTK----DNIAEPMRDIRRALLEADVSLPVVRSFIESVTE 132 Query: 73 KRYAKDV-----SVQRVLYDVS-ELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKT 125 K DV Q+++ V+ EL+ M +S + F+ P VIL+ G+ GVGKT Sbjct: 133 KAVGTDVIRGVKPEQQLVKVVNDELVQLMGGEVS---DLVFAKTAPTVILLAGLQGVGKT 189 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 TV KL+ + G ML A D +R AAIDQL I + + + +A Sbjct: 190 TVCAKLAYYLKKMGKSCMLIAADVYRPAAIDQLTILGKQVGVPVYSEGTEAKPSQIAKNG 249 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 K+A++KK DV+I+DTAGRL + +M+ + ++ R + P VL V+DA TGQ A Sbjct: 250 IKEAKSKKTDVIIVDTAGRLQVDKAMMSELKEVKRAVN------PTEVLLVVDAMTGQEA 303 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 V F+ G TG I+TK+DG +RGG + I P+ F+G GE + DLEPF Sbjct: 304 ASLVSTFNVEIGITGAILTKLDGDSRGGAALSIKEVSGKPIKFVGRGERMEDLEPFYPDR 363 Query: 306 FSAVITGCLD 315 + I G D Sbjct: 364 MAQRILGMGD 373 >gi|118355606|ref|XP_001011062.1| SRP54-type protein, GTPase domain containing protein [Tetrahymena thermophila] gi|89292829|gb|EAR90817.1| SRP54-type protein, GTPase domain containing protein [Tetrahymena thermophila SB210] Length = 460 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 86/281 (30%), Positives = 146/281 (51%), Gaps = 10/281 (3%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR---VLYDVSELIHKM 95 ++L + V ++++ L++SDI V +++ + +L K + +V + + V + + KM Sbjct: 25 KQLLNKVLKDIQLALLQSDINVKYVKQLSDNILQKCNNIEEAVNKKKLIQQLVVQELTKM 84 Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 L P +PF+ S +P+V++ VG+ G GKTT K + G + L DTFR+ A Sbjct: 85 LDPKKQPFSLK-SGKPNVVMFVGLQGAGKTTTCAKYANYWKKKGWRTCLICADTFRAGAF 143 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 DQL+ A + F + +D A+A E K Q + +V+IIDT+GR S L + Sbjct: 144 DQLQQIATKIRIPFYGNRTETDPVAIAIEGVKTFQKQNFEVIIIDTSGRHMQESELFDEM 203 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 ++ + P+ + V+D + GQ L Q + F +I+TK+DG ++GGG Sbjct: 204 KQIYSAV------CPNECIFVMDGSNGQACLNQAQAFKKAVDVGSVIITKLDGHSKGGGA 257 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316 + V + P+ FLG GE +DLE F A+ F + G D+ Sbjct: 258 LSAVAATESPIIFLGTGEHFDDLETFKAESFVKRLLGLGDF 298 >gi|289581485|ref|YP_003479951.1| signal recognition particle-docking protein FtsY [Natrialba magadii ATCC 43099] gi|289531038|gb|ADD05389.1| signal recognition particle-docking protein FtsY [Natrialba magadii ATCC 43099] Length = 470 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 93/269 (34%), Positives = 141/269 (52%), Gaps = 19/269 (7%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 +G ELE L+ SD+ + VA++I++ EL+ + S V V E + + Sbjct: 198 EGPLHELEMALLSSDVEMGVAEEILDNIRDELIGETRTFTTSTGEV---VEEALRDAIYD 254 Query: 99 LSKPFNWDFSHR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 + +DF R P I+ GVNGVGKTT I KLS+ + G ++A GDT+R+ Sbjct: 255 VISVGQFDFDERIAIEDKPVTIIFTGVNGVGKTTSIAKLSRYFEERGYSTVMANGDTYRA 314 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 A +Q++ A+ + E G D AA+ Y+A + A+A VDV++ DTAGRLH + LM Sbjct: 315 GANEQIQEHANALDTKLITHEQGGDPAAVLYDAVEYAEANDVDVVLGDTAGRLHTDEGLM 374 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + K+ RV+ P L V +A GQ+A+ + F+ A G I+TK D + G Sbjct: 375 DQLEKIDRVVD------PDMTLFVDEAVAGQDAVNRAREFNNAAEIDGAILTKADADSNG 428 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 G I + P+ FLGVG+G + +E F Sbjct: 429 GAAISVAHVTGRPILFLGVGQGYDHIERF 457 >gi|330508423|ref|YP_004384851.1| signal recognition particle-docking protein FtsY [Methanosaeta concilii GP-6] gi|328929231|gb|AEB69033.1| signal recognition particle-docking protein FtsY [Methanosaeta concilii GP-6] Length = 388 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 95/263 (36%), Positives = 141/263 (53%), Gaps = 19/263 (7%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL----IHKMLMPLSKPFN 104 LE L+ SD+ + VA++IV E+ + K +++ D +L + L+ L + Sbjct: 120 LEMALMESDVALPVAEEIVREVKSDLVGKK---KKIGSDTGQLAEDSLRNALITLLSKNH 176 Query: 105 WDFSH------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 DF +P IL VGVNG GKTT I K++K + D V+LAAGDTFR+ AI+QL Sbjct: 177 LDFDEYIRAKDKPVKILFVGVNGTGKTTSIAKVAKYLMDQSYSVVLAAGDTFRAGAIEQL 236 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++ + V + G D AA+ ++A + A+A DV++ DTAGRLH N LM + K+ Sbjct: 237 EVHGNNLGLKVVKHKTGGDPAAVIFDAIEYARAHNKDVVLADTAGRLHTNINLMDQMRKI 296 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +RV P ++ V +A G +A+ + +F+ G I+TK D A+GG I I Sbjct: 297 VRVT------TPDLLIFVDEAIAGNDAVERARLFNESVPIDGSILTKTDADAKGGSAISI 350 Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301 PV FLGVG+ DL F Sbjct: 351 AYITGKPVLFLGVGQTYPDLVKF 373 >gi|94267668|ref|ZP_01290954.1| Signal recognition particle protein [delta proteobacterium MLMS-1] gi|93451906|gb|EAT02634.1| Signal recognition particle protein [delta proteobacterium MLMS-1] Length = 456 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 79/205 (38%), Positives = 113/205 (55%), Gaps = 6/205 (2%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P VI++VG+ G GKTT GKL++++ G K L D +R AAIDQL + A+ Sbjct: 97 SRTPAVIMLVGLQGSGKTTSAGKLARRLRGEGRKPYLVPADVYRPAAIDQLTVLAESLQV 156 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 S D + +A +A D L+IDTAGRLH + LM +G++ L+ Sbjct: 157 PVYPSRSDQDPVTICRQALHRADEAGCDTLLIDTAGRLHVDETLMDELGRLKEALQ---- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V DA TGQ+A+ E FH +G+I+TK+DG ARGG + I P+ Sbjct: 213 --PAEILLVADAMTGQDAVTVAEKFHQDLDLSGVILTKLDGDARGGAALSIRRATGRPLK 270 Query: 288 FLGVGEGINDLEPFVAKDFSAVITG 312 F+G+GEG++ LEPF ++ I G Sbjct: 271 FVGLGEGLDALEPFHPDRMASRILG 295 >gi|320008304|gb|ADW03154.1| signal recognition particle-docking protein FtsY [Streptomyces flavogriseus ATCC 33331] Length = 401 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 117/279 (41%), Positives = 167/279 (59%), Gaps = 13/279 (4%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100 LD+ EE+ED L+ +D+GVA Q++VE L R V R ++ L+ + L+ L Sbjct: 128 LDEDTWEEIEDTLLTADVGVAPTQELVERL---RERVRVLGTRTPDELRTLLREELVTLL 184 Query: 101 KP-FNWDFSHR-----PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 P + + P V++VVGVNG GKTT GKL++ + G V+L A DTFR+AA Sbjct: 185 GPELDREVKTEGGDTTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAA 244 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 DQL+ W +R A V G D A++A++A K+ A+ DV++IDTAGRLH + LM Sbjct: 245 ADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDE 304 Query: 215 IGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 +GK+ RV+++ H P VL VLDATTGQN L Q +F V TG+++TK+DGTA+GG Sbjct: 305 LGKVKRVVEK---HGPLDEVLLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGG 361 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +I + +PV +G+GEG +DL PF F + G Sbjct: 362 IVIAVQRELGVPVKLIGLGEGPDDLAPFEPGAFVDALIG 400 >gi|288930433|ref|YP_003434493.1| signal recognition particle-docking protein FtsY [Ferroglobus placidus DSM 10642] gi|288892681|gb|ADC64218.1| signal recognition particle-docking protein FtsY [Ferroglobus placidus DSM 10642] Length = 326 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 106/323 (32%), Positives = 168/323 (52%), Gaps = 36/323 (11%) Query: 5 KVASESLSWIRKLTKGFASTSLK------LKEGITDIISSRRL--DDGVRE----ELEDL 52 K E LS RK A + LKE + +I R + D+G E ELE + Sbjct: 3 KALKEKLSSFRKKVDEEAGEEIAKKEKIGLKEKLATLILEREIIIDEGKLEKVLPELEMI 62 Query: 53 LIRSDIGVAV----AQKIVEELLTKRYAKDVSVQR-VLYDVSELIHKMLMPLSKPFNWDF 107 L+ SD+ V ++++ E L+ +R S+ VL ++ E++ ++L SK + +DF Sbjct: 63 LLESDVAFEVVDEISKRLKERLVGRRKGIGESLSSLVLKELKEILREIL---SKNY-FDF 118 Query: 108 SH---------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +P I+ VGVNG GKTT I KL+ ++ +G V+LAAGDTFR+ AI+QL Sbjct: 119 DEFVEKKLEEKKPLHIIFVGVNGTGKTTTIAKLAYRLLKSGKSVVLAAGDTFRAGAIEQL 178 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 + + + + G+D AA+ Y+A K A++K +DV++ DTAGR+H L+ + K+ Sbjct: 179 EEHGKKLGVRVIKHKPGADPAAVIYDAIKHAESKGIDVVLSDTAGRMHTKKNLIDQLEKI 238 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 RV P + V ++ G +A+ + MF+ G G I+TK+D +GG I I Sbjct: 239 KRVTN------PDLTIFVDESLAGNDAVERARMFNEAIGIDGSILTKIDADPKGGCAISI 292 Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301 + P+ F+G G+ DL F Sbjct: 293 SYVTEKPILFVGTGQNYEDLVKF 315 >gi|323702674|ref|ZP_08114335.1| signal recognition particle protein [Desulfotomaculum nigrificans DSM 574] gi|323532337|gb|EGB22215.1| signal recognition particle protein [Desulfotomaculum nigrificans DSM 574] Length = 444 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 96/285 (33%), Positives = 150/285 (52%), Gaps = 16/285 (5%) Query: 39 RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 R +D V + + ++ L+ +D+ V ++ V + + +DV Q+V+ V + Sbjct: 21 RLTEDDVNQAMREVRMALLEADVNFKVVKEFVAHVKERAIGQDVLESLSPAQQVIKIVKD 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + ++L N P +I++VG+ G GKTT GKL+K +S G + +L AGD + Sbjct: 81 ELTELLGGTQAKINLS-PKPPTIIMLVGLQGAGKTTTAGKLAKLLSKQGRRPLLVAGDIY 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAI QL++ ++ + V S D +A A +QA + DV+IIDTAGRLH N Sbjct: 140 RPAAIKQLQVLGEQLNIP-VFSLGQEDPVKIAKAAVEQANSTGRDVVIIDTAGRLHINEE 198 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + + +K PH +L V+DA TGQ A+ + F+ G G+IMTK+DG A Sbjct: 199 LMDELANIKASVK------PHEILLVVDAMTGQEAVNVADTFNQKLGLDGIIMTKLDGDA 252 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + + P+ F G+GE ++ LEPF + I G D Sbjct: 253 RGGAALSVRKVTGCPIKFAGMGEKLDALEPFHPDRMADRILGMGD 297 >gi|298674678|ref|YP_003726428.1| signal recognition particle-docking protein FtsY [Methanohalobium evestigatum Z-7303] gi|298287666|gb|ADI73632.1| signal recognition particle-docking protein FtsY [Methanohalobium evestigatum Z-7303] Length = 359 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 87/273 (31%), Positives = 151/273 (55%), Gaps = 22/273 (8%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSELIHK 94 +D +++ L DL L+ +DI ++V++ IVE EL+ R +++ D + K Sbjct: 85 EDDIQDTLWDLEMGLLENDIALSVSEAIVESVKNELVGTRRRIGSDTGKIVEDA---LKK 141 Query: 95 MLMPLSKPFNWDF------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 L + +DF + +P I+ VGVNG GKTT I K++ + + ++AAGD Sbjct: 142 SLYNIMSANTFDFDEYLKNAEKPVHIVFVGVNGTGKTTTIAKMANLLQNDNYSTVIAAGD 201 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+ AIDQ++ A++ + + + D AA+ Y+A + A+++ +DV++ DTAGR+H N Sbjct: 202 TFRAGAIDQIESHANKINTKLIKHQEMGDPAAVVYDAVQYAKSRSIDVVLSDTAGRMHTN 261 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM+ + K+ RV +P ++ V +A G +A+ + + F+ G I+TK D Sbjct: 262 VNLMSQLEKVCRV------SSPDLIIFVDEAVAGNDAVERAQQFNDNIPIDGSILTKADA 315 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 ++GG I I P+ +LG+G+G DL+ F Sbjct: 316 DSKGGAAISIAYITGKPILYLGIGQGYEDLKKF 348 >gi|150403620|ref|YP_001330914.1| signal recognition particle-docking protein FtsY [Methanococcus maripaludis C7] gi|150034650|gb|ABR66763.1| signal recognition particle-docking protein FtsY [Methanococcus maripaludis C7] Length = 383 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 88/256 (34%), Positives = 142/256 (55%), Gaps = 16/256 (6%) Query: 56 SDIGVAVAQKIVEELLT-----KRYAKD----VSVQRVLYDVSELIHKMLMPLSKPFNWD 106 +D+ V +KI+E L K AKD +++ + + E++ + + K + Sbjct: 111 ADVAFEVVEKIIESLKNQLVGLKISAKDNPEEITINALKKSIKEILSQEQSDVFKLIDEK 170 Query: 107 FSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + +P V+L VG+NG GKTT I KL + + G V++AAGDTFR+ AI+QL+ T Sbjct: 171 KAKGKPAVLLFVGINGTGKTTSISKLGYILKERGYSVVMAAGDTFRAGAIEQLEEHGKNT 230 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + + G+D+AA+ Y+A A+AK +DV++ DTAGR N LM I K++RV K Sbjct: 231 AIKVIKHQKGADSAAVIYDAISHAKAKGIDVVLADTAGRQTTNINLMDEIKKVVRVTK-- 288 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P ++ V D+ G +A+ Q E F+ G I+TK D A+GG + I + P Sbjct: 289 ----PDLIIFVGDSLAGNDAISQAEEFNNAIDIDGAILTKTDADAKGGAALSIAYSIGKP 344 Query: 286 VYFLGVGEGINDLEPF 301 + F+GVG+ +D++ F Sbjct: 345 ILFMGVGQRYSDIQEF 360 >gi|116750418|ref|YP_847105.1| signal recognition particle protein [Syntrophobacter fumaroxidans MPOB] gi|116750460|ref|YP_847147.1| signal recognition particle protein [Syntrophobacter fumaroxidans MPOB] gi|116699482|gb|ABK18670.1| signal recognition particle subunit FFH/SRP54 (srp54) [Syntrophobacter fumaroxidans MPOB] gi|116699524|gb|ABK18712.1| signal recognition particle subunit FFH/SRP54 (srp54) [Syntrophobacter fumaroxidans MPOB] Length = 454 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 91/282 (32%), Positives = 148/282 (52%), Gaps = 15/282 (5%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 ++ +RE L ++ L+ +D+ VA+ V + + ++V Q+V+ V+E + Sbjct: 24 EENIREALREVRMALLEADVHYKVAKDFVTGIAERAVGQEVMTSLTPGQQVIKIVNEALT 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 ++ S+P P +L+VG+ G GKTT KL++K+ K L D +R A Sbjct: 84 DLMGGQSEPLRL-IGKPPVCLLMVGLQGSGKTTTTAKLARKLVQEHRKPCLVPADVYRPA 142 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 AI+QL A + + S + +A EA A+ D LI+DTAGRLH ++ LM Sbjct: 143 AIEQLVTLAGQINLPVYPSTVRQKPEEIAREAQGYAREHNCDTLIVDTAGRLHIDTELMG 202 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 +G++ +L+ P +L V DA TGQ+A++ FH G +G+I+TK+DG ARGG Sbjct: 203 ELGRLKEILQ------PAEILLVADAMTGQDAVQVASAFHETLGLSGVILTKLDGDARGG 256 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I + P+ F+G+GE ++ LE F S+ I G D Sbjct: 257 AALSIRAVTRCPIKFIGLGEKLDALEVFHPDRMSSRILGMGD 298 >gi|187917955|ref|YP_001883518.1| cell division protein FtsY [Borrelia hermsii DAH] gi|119860803|gb|AAX16598.1| cell division protein FtsY [Borrelia hermsii DAH] Length = 284 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 153/264 (57%), Gaps = 8/264 (3%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104 + E LED+L+ +DI + +I+E + + + L + + + + +P N Sbjct: 22 IFENLEDILLEADIKNDIVIEIIEYIKKVKVK---DEKETLLKLKDFLKSYINQ--QPLN 76 Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 + + R +++L++G+NGVGKT+ I KL+ K+ + G V++AA DTFR+AAI Q+KI +++ Sbjct: 77 LE-NKRLNILLIIGINGVGKTSSIIKLANKLKNEGKNVLIAAADTFRAAAIQQIKIQSEK 135 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + GSDAAA+ +++ A++K D+LIIDTAGRL N L+ + KM V+K+ Sbjct: 136 IGIKVISQNQGSDAAAVIFDSISSAKSKNYDILIIDTAGRLQNKENLIKELQKMDNVIKK 195 Query: 225 --LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 ++ + + V+D+ +G+N Q E+F+ G+I TK D ++R GG++ I Sbjct: 196 QIIETDINYKKILVIDSISGKNVNNQAEIFNKAIEIDGIIATKFDSSSRAGGILNISKLF 255 Query: 283 KIPVYFLGVGEGINDLEPFVAKDF 306 K P+YF GE + ++ F D+ Sbjct: 256 KKPIYFFTFGEQVEHIKEFNTDDY 279 >gi|319776724|ref|YP_004139212.1| Signal recognition particle protein [Haemophilus influenzae F3047] gi|317451315|emb|CBY87553.1| Signal recognition particle protein [Haemophilus influenzae F3047] Length = 462 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 102/305 (33%), Positives = 159/305 (52%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72 F + S +L + + +I RL +D ++E L ++ L+ +D+ + V + K+ E L Sbjct: 2 FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61 Query: 73 KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K ++ Q L V + K + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KV++ + D +R AAI QL+ A DF S++ + +A EA A+ Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKEALADAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVLI+DTAGRLH ++ +M I ++ L P L +DA TGQ+A + Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFYPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|297156886|gb|ADI06598.1| putative signal recognition particle receptor [Streptomyces bingchenggensis BCW-1] Length = 405 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 112/291 (38%), Positives = 160/291 (54%), Gaps = 24/291 (8%) Query: 37 SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96 S LDD EE+ED L+ +D+GVA Q++VE L R V R ++ L+ L Sbjct: 123 SREHLDDETWEEIEDTLLTADVGVAPTQELVEGL---RERVRVLGTRTPEELRGLLRAEL 179 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGK--------------TTVIGKLSKKMSDAGLKV 142 + L + H VG NG K TT GKL++ + G V Sbjct: 180 LQL---IGTEADRAVHTESGVGANGEEKPGVVMVVGVNGTGKTTTTGKLARVLVADGKSV 236 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +L A DTFR+AA +QL+ W +R A V G D A++A++A K+ A+ DV+++DTA Sbjct: 237 VLGAADTFRAAAAEQLQTWGERVGARTVRGPEGGDPASVAFDAVKEGIAEGADVVLVDTA 296 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPH-APHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 GRLH + LM +GK+ RV+++ H A VL VLDATTGQN L Q +F V TG+ Sbjct: 297 GRLHTKTGLMDELGKVKRVVEK---HGAVDEVLLVLDATTGQNGLVQARVFAEVVNITGI 353 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 ++TK+DGTA+GG +I + +PV +G+GEG +DL PF + F + G Sbjct: 354 VLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGADDLAPFEPEAFVDALIG 404 >gi|119952879|ref|YP_945088.1| cell division protein FtsY [Borrelia turicatae 91E135] gi|119861650|gb|AAX17418.1| cell division protein FtsY [Borrelia turicatae 91E135] Length = 284 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 91/264 (34%), Positives = 151/264 (57%), Gaps = 8/264 (3%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104 + E+LED+L+ +DI + +I+E + K KD + + + + + S N Sbjct: 22 IFEKLEDILLEADIKNDIVIEIIENI-KKLKVKDE--EETFLKLKDFLKSYINQQS--LN 76 Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 + + R +++L++GVNGVGKT+ I KL+ K + G V++AA DTFR+AAI+Q+KI +++ Sbjct: 77 LE-NKRLNILLIIGVNGVGKTSSIIKLANKFKNEGKNVLIAAADTFRAAAIEQIKIQSEK 135 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + GSDAAA+ +++ A+ K D+LIIDTAGRL N L+ + KM V+K+ Sbjct: 136 IGIKVISQNQGSDAAAVIFDSISSAKTKNYDILIIDTAGRLQNKENLIKELQKMDNVIKK 195 Query: 225 --LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 + + + V+D+ G+N Q E+F+ G+I TK D ++R GG+I I Sbjct: 196 QMIKTDVNYKKILVIDSIAGKNINNQTEIFNKAIEIDGIIATKFDSSSRAGGIINISKLF 255 Query: 283 KIPVYFLGVGEGINDLEPFVAKDF 306 K P+YF GE + ++ F D+ Sbjct: 256 KKPIYFFTFGEQVEHIKEFNTDDY 279 >gi|134299902|ref|YP_001113398.1| signal recognition particle protein [Desulfotomaculum reducens MI-1] gi|134052602|gb|ABO50573.1| signal recognition particle subunit FFH/SRP54 (srp54) [Desulfotomaculum reducens MI-1] Length = 446 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 93/276 (33%), Positives = 146/276 (52%), Gaps = 19/276 (6%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKP 102 E++ L+ +D+ V ++ V ++ + +DV Q+V+ V + + ++L Sbjct: 33 EVKMALLEADVNFKVVKEFVAQVKGRAVGQDVLESLSPAQQVIKIVRDELTELLGGTQAK 92 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 N P +I++VG+ G GKTT GKL+K +S G + ++ AGD +R AAI QL++ Sbjct: 93 INLS-PKPPTIIMLVGLQGAGKTTTAGKLAKLLSKQGRRPLMVAGDIYRPAAIKQLQVLG 151 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM---AGIGKMI 219 D+ + V S + +A A +QA + D++IIDTAGRLH N LM A I + Sbjct: 152 DQLNIP-VFSMGQENPVKIAQSAVEQANSTGRDLVIIDTAGRLHINEELMDELANIKSTV 210 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 R PH +L V+DA TGQ A+ + F+ G G++MTK+DG ARGG + + Sbjct: 211 R---------PHEILLVVDAMTGQEAVNVADTFNQKLGLDGIVMTKLDGDARGGAALSVR 261 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F G+GE ++ LEPF + I G D Sbjct: 262 KVTGTPIKFAGMGEKLDALEPFYPDRMADRILGMGD 297 >gi|327399601|ref|YP_004340470.1| signal recognition particle protein [Hippea maritima DSM 10411] gi|327182230|gb|AEA34411.1| signal recognition particle protein [Hippea maritima DSM 10411] Length = 441 Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 99/289 (34%), Positives = 157/289 (54%), Gaps = 21/289 (7%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVSVQRVLYDVSE 90 +I+ + LD+ +RE ++ L+ +D+ V +++ EEL K K ++ ++ V E Sbjct: 21 VITEKDLDNALRE-IKFALLEADVNYKVVKDFTKELKEELKGKELEKSLTPGQI---VVE 76 Query: 91 LIHKMLMPL----SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 +HK L + ++P + P +I++VG+ G GKTT KL+K + G + +L A Sbjct: 77 EVHKKLTEILGGQAQPLT--ITKTPFIIMLVGLQGSGKTTTAAKLAKFLRSKGRQPLLVA 134 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 D +R AAI QL+I + + D V S+ S +A EA A+ +V+IIDTAGRLH Sbjct: 135 CDIYRPAAIKQLQILGKQINID-VFSKENSKPEDIAKEALNYAKQNGKNVIIIDTAGRLH 193 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + LM ++ R+ ++++P +L V DA GQ A+ ++F G TG I TK+ Sbjct: 194 IDDELME---ELERIKQKIEPD---EILFVADAMIGQEAVNVAKVFDERVGITGAIFTKL 247 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG ARGG + I+ P+ F GVGE I+D EPF ++ I G D Sbjct: 248 DGDARGGAALSIMKVVGKPIKFAGVGEKISDFEPFYPDRVASRILGMGD 296 >gi|289643132|ref|ZP_06475261.1| signal recognition particle-docking protein FtsY [Frankia symbiont of Datisca glomerata] gi|289507024|gb|EFD27994.1| signal recognition particle-docking protein FtsY [Frankia symbiont of Datisca glomerata] Length = 369 Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 99/237 (41%), Positives = 140/237 (59%), Gaps = 12/237 (5%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTK------RYAKDVSVQRVLYDVSELIHK 94 LD+ V E++E L+ +D+GV +++V L TK R DV V +L D EL+ + Sbjct: 138 LDEEVWEDVETTLLVADVGVTPTEELVASLRTKVKVLGARRPADVHV--LLRD--ELLAQ 193 Query: 95 MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 + + RP ILVVGVNG GKTT GK+++ + G +V+L A DTFR+AA Sbjct: 194 IGTSTDRTVQAFAQGRPANILVVGVNGTGKTTTCGKIARLLVADGRRVVLGAADTFRAAA 253 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 DQL+ W R A V G D A++A+EA K+ + VD ++IDTAGRLH + LM Sbjct: 254 ADQLETWGSRVGAYTVRGSEGGDPASVAFEAAKRGISDGVDTVVIDTAGRLHTKTGLMDE 313 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 + K+ +V+ +L P VL VLDATTGQNA+ Q +F TG+++TK+DGT R Sbjct: 314 LSKIKKVVAKLGPV--DEVLLVLDATTGQNAVEQARVFTQAVDITGVVLTKLDGTPR 368 >gi|295696070|ref|YP_003589308.1| signal recognition particle protein [Bacillus tusciae DSM 2912] gi|295411672|gb|ADG06164.1| signal recognition particle protein [Bacillus tusciae DSM 2912] Length = 445 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 92/306 (30%), Positives = 154/306 (50%), Gaps = 21/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F + +L+E + S +L D +E+ L+ +D+ V + V + + Sbjct: 4 FEGLAGRLQEAFARLKSKGKLSEADVDEAMKEVRRALLAADVNFTVVRDFVARVRERAVG 63 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 ++V Q+V+ +++H L L KP + S RP V+++VG+ G GKTT G Sbjct: 64 QEVMKSLTPAQQVI----KIVHDELTALLGGKPSTLNLSGRPAVVMLVGLQGAGKTTTAG 119 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL++ + G + +L A D +R AA+ QL+ + + +D ++ + ++A Sbjct: 120 KLAQWVRKQGRRPLLVAADVYRPAAVRQLQTLGEALKVPVFSVDGDADPVEISKSSLERA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DV+++DTAGRLH + LM + +M + P +L V+DA TGQ+A+ Sbjct: 180 SQEGCDVVLVDTAGRLHVDDALMEELERMKAAV------VPGEILLVVDAMTGQSAVEVA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E FH G TG I TK+DG +GG + I+ P+ F GVGE ++ LEPF ++ Sbjct: 234 EAFHGRLGLTGAIFTKLDGDTKGGAALSILSVAGCPIKFAGVGEKLDALEPFYPDRMASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|329123887|ref|ZP_08252441.1| signal recognition particle protein [Haemophilus aegyptius ATCC 11116] gi|327468494|gb|EGF13975.1| signal recognition particle protein [Haemophilus aegyptius ATCC 11116] Length = 462 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 101/305 (33%), Positives = 159/305 (52%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72 F + S +L + + +I RL +D ++E L ++ L+ +D+ + V + K+ E L Sbjct: 2 FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61 Query: 73 KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K ++ Q L V + K + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 EEVNKSLTPGQEFLKIVQSELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KV++ + D +R AAI QL+ A DF S++ + +A EA A+ Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKEALADAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVLI+DTAGRLH ++ +M I ++ L P L +DA TGQ+A + Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF ++ I Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFYPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|56708058|ref|YP_169954.1| signal recognition particle protein, Ffh [Francisella tularensis subsp. tularensis SCHU S4] gi|110670529|ref|YP_667086.1| signal recognition particle protein, Ffh [Francisella tularensis subsp. tularensis FSC198] gi|224457145|ref|ZP_03665618.1| signal recognition particle protein, Ffh [Francisella tularensis subsp. tularensis MA00-2987] gi|254370544|ref|ZP_04986549.1| signal recognition particle protein [Francisella tularensis subsp. tularensis FSC033] gi|254874860|ref|ZP_05247570.1| signal recognition particle protein [Francisella tularensis subsp. tularensis MA00-2987] gi|56604550|emb|CAG45597.1| signal recognition particle protein, Ffh [Francisella tularensis subsp. tularensis SCHU S4] gi|110320862|emb|CAL08980.1| signal recognition particle protein, Ffh [Francisella tularensis subsp. tularensis FSC198] gi|151568787|gb|EDN34441.1| signal recognition particle protein [Francisella tularensis subsp. tularensis FSC033] gi|254840859|gb|EET19295.1| signal recognition particle protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159253|gb|ADA78644.1| signal recognition particle protein, Ffh [Francisella tularensis subsp. tularensis NE061598] Length = 458 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 101/305 (33%), Positives = 155/305 (50%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ I L ++ ++ L D+ L+ +D+ + V +K + + K Sbjct: 2 FTSLSEKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIANIKEKAIG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V Q + V + I K L + P N + P VIL+ G+ G GKTT KL Sbjct: 62 EEVKKSLTPDQTFISFVKKEIEKALGEEAVPINLK-TQPPAVILMAGLQGAGKTTSTAKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KVM+ + D +R AAIDQL+ A+ + +F S+ + A K A+ Sbjct: 121 AKYLKEQHNKKVMVVSADVYRPAAIDQLRTLANSLNVEFFKSDASQQPEDIVTAAIKTAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K +DVLIIDTAGRLH ++ +M I ++ ++ K P +D+ TGQ+A + Sbjct: 181 TKLIDVLIIDTAGRLHIDNDMMDEIKQIHKIAK------PIETFFTVDSMTGQDAAVTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGVGEKTDALEPFHPDRVASKI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|30249431|ref|NP_841501.1| Signal recognition particle GTPase ffh protein [Nitrosomonas europaea ATCC 19718] gi|30138794|emb|CAD85371.1| Signal recognition particle GTPase ffh protein [Nitrosomonas europaea ATCC 19718] Length = 448 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 102/305 (33%), Positives = 159/305 (52%), Gaps = 28/305 (9%) Query: 28 LKEGITDIISSRR---------LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78 L E ++D+I + R + D +RE + LI +D+ + V + +E++ + + Sbjct: 5 LTERLSDVIKTLRGEARLTESNIQDALRE-VRMALIEADVALPVIKIFIEQVKQRAIGHE 63 Query: 79 V----SVQRVLYDVSELIHKMLMPL----SKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 V S + L V +H+ L+ + N + + P VIL+ G+ G GKTT GK Sbjct: 64 VLDKLSPGQALIGV---VHEELVAIMGGDKAELNLNVAP-PAVILMAGLQGAGKTTSSGK 119 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K + D KV+L + D +R AAIDQL + A++T ADF + G A + A A+ Sbjct: 120 LAKWLMDQKKKVLLVSCDVYRPAAIDQLALLAEQTGADFFPVQTGRQPAEICTAALDFAR 179 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DV+I+DTAGRL + +M I ++ ++LK P L V+DA GQ+A+ + Sbjct: 180 KHHHDVVIVDTAGRLGIDEAMMREISQLEQLLK------PAETLFVVDAMQGQDAVNTAK 233 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F V TG+I+TK+DG ARGG + + P+ F GV E +N LEPF ++ I Sbjct: 234 AFAEVLPLTGVILTKLDGDARGGAALSVRHITGKPIKFAGVAEKLNGLEPFYPDRMASRI 293 Query: 311 TGCLD 315 G D Sbjct: 294 LGMGD 298 >gi|28493523|ref|NP_787684.1| cell division protein FtsY [Tropheryma whipplei str. Twist] gi|28572365|ref|NP_789145.1| SRP54-type protein [Tropheryma whipplei TW08/27] gi|28410496|emb|CAD66882.1| putative SRP54-type protein [Tropheryma whipplei TW08/27] gi|28476565|gb|AAO44653.1| cell division protein FtsY [Tropheryma whipplei str. Twist] Length = 222 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 89/207 (42%), Positives = 126/207 (60%), Gaps = 3/207 (1%) Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 ++ P VIL+VGVNGVGKT GKL+ + G KV+LAA DTFR+AA++QL IWA R Sbjct: 18 LTNHPSVILIVGVNGVGKTATAGKLANLLHLRGKKVLLAAADTFRAAAVEQLSIWAQRAG 77 Query: 167 ADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + D A++AY + K+A DV++IDTAGRLHN + LMA + ++ RV ++L Sbjct: 78 VEIITPPKPRIDPASVAYSSVKKAIDDNYDVVVIDTAGRLHNKANLMAELERIARVTEKL 137 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 + VL VLDATTGQN L Q F TG++++K D +A+ G + + + +P Sbjct: 138 --VSIDEVLLVLDATTGQNGLTQARSFLEAVSVTGIVLSKTDSSAKAGFIFQVQESTGVP 195 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITG 312 V +G GE I+D+ F F A I G Sbjct: 196 VKLIGTGEAIDDIAGFAPYAFVAQIFG 222 >gi|68248720|ref|YP_247832.1| Signal recognition particle protein [Haemophilus influenzae 86-028NP] gi|319896550|ref|YP_004134743.1| signal recognition particle protein [Haemophilus influenzae F3031] gi|68056919|gb|AAX87172.1| Signal recognition particle protein [Haemophilus influenzae 86-028NP] gi|317432052|emb|CBY80401.1| Signal recognition particle protein [Haemophilus influenzae F3031] Length = 459 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 102/305 (33%), Positives = 159/305 (52%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72 F + S +L + + +I RL +D ++E L ++ L+ +D+ + V + K+ E L Sbjct: 2 FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61 Query: 73 KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K ++ Q L V + K + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KV++ + D +R AAI QL+ A DF S++ + +A EA A+ Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKEALADAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVLI+DTAGRLH ++ +M I ++ L P L +DA TGQ+A + Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|145635508|ref|ZP_01791208.1| Signal recognition particle protein [Haemophilus influenzae PittAA] gi|229845502|ref|ZP_04465631.1| Signal recognition particle protein [Haemophilus influenzae 6P18H1] gi|145267273|gb|EDK07277.1| Signal recognition particle protein [Haemophilus influenzae PittAA] gi|229811605|gb|EEP47305.1| Signal recognition particle protein [Haemophilus influenzae 6P18H1] Length = 462 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 102/305 (33%), Positives = 159/305 (52%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72 F + S +L + + +I RL +D ++E L ++ L+ +D+ + V + K+ E L Sbjct: 2 FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61 Query: 73 KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K ++ Q L V + K + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KV++ + D +R AAI QL+ A DF S++ + +A EA A+ Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKEALADAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVLI+DTAGRLH ++ +M I ++ L P L +DA TGQ+A + Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|145633682|ref|ZP_01789408.1| Signal recognition particle protein [Haemophilus influenzae 3655] gi|144985442|gb|EDJ92263.1| Signal recognition particle protein [Haemophilus influenzae 3655] Length = 459 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 102/305 (33%), Positives = 159/305 (52%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72 F + S +L + + +I RL +D ++E L ++ L+ +D+ + V + K+ E L Sbjct: 2 FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61 Query: 73 KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K ++ Q L V + K + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KV++ + D +R AAI QL+ A DF S++ + +A EA A+ Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKEALADAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVLI+DTAGRLH ++ +M I ++ L P L +DA TGQ+A + Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|184200702|ref|YP_001854909.1| cell division protein FtsY [Kocuria rhizophila DC2201] gi|183580932|dbj|BAG29403.1| signal recognition particle receptor [Kocuria rhizophila DC2201] Length = 372 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 114/281 (40%), Positives = 166/281 (59%), Gaps = 20/281 (7%) Query: 37 SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY----AKDVSV------QRVLY 86 S R+D +E+ED L+ +D+G + ++VE L KR KD S + +L Sbjct: 95 SRERIDQDTWDEIEDTLLMADLGTDASLELVENL-KKRVRVDGTKDPSQLKAMLREEMLA 153 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 V + + L S P +P V+LVVGVNGVGKTT +GKL++ + VML A Sbjct: 154 LVDPTLDRSLRTESAP------GKPAVVLVVGVNGVGKTTTVGKLARVLVAEDKDVMLGA 207 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 DTFR+AA DQL+ W R V SE G+D A++AY+A + ++ DV+++DTAGRL Sbjct: 208 ADTFRAAAADQLETWGARVGVPTVRSEQEGADPASVAYDAVRAGIEQESDVVLVDTAGRL 267 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 N + LM +GK+ RV+++ A VL V+DATTGQN + Q +F TG+++TK Sbjct: 268 QNKAGLMDQLGKVKRVIEKA--AAVDEVLLVIDATTGQNGMTQARVFAEAVDITGIVLTK 325 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +DGTA+GG ++ I +PV +G+GEG +DL PF A+ F Sbjct: 326 LDGTAKGGIVVAIQRGLGVPVKLIGLGEGPDDLAPFNAEQF 366 >gi|302761974|ref|XP_002964409.1| hypothetical protein SELMODRAFT_81276 [Selaginella moellendorffii] gi|300168138|gb|EFJ34742.1| hypothetical protein SELMODRAFT_81276 [Selaginella moellendorffii] Length = 494 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 147/285 (51%), Gaps = 23/285 (8%) Query: 43 DGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA--------KDVSVQRVLYDVSEL 91 + ++E L+D+ L+ +D+ + V +K+V + K D + +V+YD EL Sbjct: 31 ENMKEPLQDIRRALLEADVSLPVVRKLVGSIAEKAVGTGVIRGVRPDQQLVKVVYD--EL 88 Query: 92 IHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 I M + + +FS P VIL+ G+ GVGKTT GKL+ M G ML A D + Sbjct: 89 ISLMG---GQAAHIEFSGTPPTVILMAGLQGVGKTTACGKLALYMKKKGKSCMLVATDIY 145 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAI+QL + + +A K+A+ K DVLI+DTAGRL ++ Sbjct: 146 RPAAIEQLITLGKQVEVPVFEAGTELSPVEIAKRGLKEAKEKGTDVLIVDTAGRLQVDAT 205 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 +M + +M +VL P+ VL V+DA TGQ A V F+ G TG IMTK+DG + Sbjct: 206 MMDELKQMKKVLN------PNEVLLVVDAMTGQEAAALVSAFNLEVGITGAIMTKVDGDS 259 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + + P+ F+G GEG+N LE F ++ I G D Sbjct: 260 RGGAALSVREVSGKPIKFVGEGEGMNALELFYPDRMASRILGMGD 304 >gi|302522143|ref|ZP_07274485.1| signal recognition particle-docking protein FtsY [Streptomyces sp. SPB78] gi|302431038|gb|EFL02854.1| signal recognition particle-docking protein FtsY [Streptomyces sp. SPB78] Length = 408 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 114/326 (34%), Positives = 174/326 (53%), Gaps = 34/326 (10%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 +V + + +L + + L +G+ ++S LD+ EE+ED L+ +D+GVA Q Sbjct: 98 EVPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVAPTQ 157 Query: 65 KIVEELLTK-------------RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111 ++VE L + ++ + V D +H P +P Sbjct: 158 ELVERLRERVRVLGTRTTDELRTLLREELLTLVGADTDRTVHTEAAP----------DKP 207 Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 +++VVGVNG GKTT GKL++ + G V+L A DTFR+AA DQL+ W +R A V Sbjct: 208 GIVMVVGVNGTGKTTTTGKLARVLVADGKSVVLGAADTFRAAAADQLQTWGERVGARTVR 267 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP- 230 G D A++A++A K+ A+K D ++IDTAGRLH + LM +GK+ RV+++ AP Sbjct: 268 GPEGGDPASIAFDAVKEGIAEKADAVLIDTAGRLHTKTGLMDELGKVKRVVEK---QAPV 324 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL VLDATTGQN L F A + + ++T +DGTA+GG +I + +PV Sbjct: 325 DEVLLVLDATTGQNGLVS---FSASSTRSCRSPAFVLTNLDGTAKGGIVIAVQRELGVPV 381 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITG 312 +G+GEG +DL PF F + G Sbjct: 382 KLIGLGEGADDLAPFEPGAFVDALIG 407 >gi|134301872|ref|YP_001121841.1| signal recognition particle protein [Francisella tularensis subsp. tularensis WY96-3418] gi|254372796|ref|ZP_04988285.1| hypothetical protein FTCG_00366 [Francisella tularensis subsp. novicida GA99-3549] gi|254374256|ref|ZP_04989738.1| signal recognition particle protein [Francisella novicida GA99-3548] gi|134049649|gb|ABO46720.1| signal recognition particle protein [Francisella tularensis subsp. tularensis WY96-3418] gi|151570523|gb|EDN36177.1| hypothetical protein FTCG_00366 [Francisella novicida GA99-3549] gi|151571976|gb|EDN37630.1| signal recognition particle protein [Francisella novicida GA99-3548] gi|328676930|gb|AEB27800.1| Signal recognition particle, subunit Ffh SRP54 [Francisella cf. novicida Fx1] Length = 458 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 101/305 (33%), Positives = 155/305 (50%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ I L ++ ++ L D+ L+ +D+ + V +K + + K Sbjct: 2 FTSLSEKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIANIKEKAIG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V Q + V + I K L + P N + P VIL+ G+ G GKTT KL Sbjct: 62 EEVKKSLTPDQTFISFVKKEIEKALGEEAVPINLK-TQPPAVILMAGLQGAGKTTSTAKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KVM+ + D +R AAIDQL+ A+ + +F S+ + A K A+ Sbjct: 121 AKYLKEQHKKKVMVVSADVYRPAAIDQLRTLANSLNVEFFESDASQQPEDIVTAAIKTAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K +DVLIIDTAGRLH ++ +M I ++ ++ K P +D+ TGQ+A + Sbjct: 181 TKLIDVLIIDTAGRLHIDNDMMDEIKQIHKIAK------PIETFFTVDSMTGQDAAVTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGVGEKTDALEPFHPDRVASKI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|302768411|ref|XP_002967625.1| hypothetical protein SELMODRAFT_169303 [Selaginella moellendorffii] gi|300164363|gb|EFJ30972.1| hypothetical protein SELMODRAFT_169303 [Selaginella moellendorffii] Length = 462 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 100/283 (35%), Positives = 146/283 (51%), Gaps = 23/283 (8%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA--------KDVSVQRVLYDVSELIH 93 ++E L+D+ L+ +D+ + V +K+V + K D + +V+YD ELI Sbjct: 1 MKEPLQDIRRALLEADVSLPVVRKLVGSIAEKAVGTGVIRGVRPDQQLVKVVYD--ELIS 58 Query: 94 KMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 M + + +FS P VIL+ G+ GVGKTT GKL+ M G ML A D +R Sbjct: 59 LMG---GQAAHIEFSGTPPTVILMAGLQGVGKTTACGKLALYMKKKGKSCMLVATDIYRP 115 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL + + +A K+A+ K DVLI+DTAGRL ++ +M Sbjct: 116 AAIEQLITLGKQVEVPVFEAGTELSPVEIAKRGLKEAKEKGTDVLIVDTAGRLQVDATMM 175 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + +M +VL P+ VL V+DA TGQ A V F+ G TG IMTK+DG +RG Sbjct: 176 DELKQMKKVLN------PNEVLLVVDAMTGQEAAALVSAFNLEVGITGAIMTKVDGDSRG 229 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + + P+ F+G GEG+N LE F ++ I G D Sbjct: 230 GAALSVQEVSGKPIKFVGEGEGMNALELFYPDRMASRILGMGD 272 >gi|118497435|ref|YP_898485.1| signal recognition particle GTPase [Francisella tularensis subsp. novicida U112] gi|195536126|ref|ZP_03079133.1| signal recognition particle protein [Francisella tularensis subsp. novicida FTE] gi|118423341|gb|ABK89731.1| signal recognition particle GTPase [Francisella novicida U112] gi|194372603|gb|EDX27314.1| signal recognition particle protein [Francisella tularensis subsp. novicida FTE] Length = 458 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 101/305 (33%), Positives = 155/305 (50%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ I L ++ ++ L D+ L+ +D+ + V +K + + K Sbjct: 2 FTSLSEKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIANIKEKAIG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V Q + V + I K L + P N + P VIL+ G+ G GKTT KL Sbjct: 62 EEVKKSLTPDQTFISFVKKEIEKALGEEAVPINLK-TQPPAVILMAGLQGAGKTTSTAKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KVM+ + D +R AAIDQL+ A+ + +F S+ + A K A+ Sbjct: 121 AKYLKEQHKKKVMVVSADVYRPAAIDQLRTLANSLNVEFFESDASQQPEDIVTAAIKTAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K +DVLIIDTAGRLH ++ +M I ++ ++ K P +D+ TGQ+A + Sbjct: 181 TKLIDVLIIDTAGRLHIDNDMMDEIKQIHKIAK------PIETFFTVDSMTGQDAAVTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGVGEKTDALEPFHPDRVASKI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|208779229|ref|ZP_03246575.1| signal recognition particle protein [Francisella novicida FTG] gi|208745029|gb|EDZ91327.1| signal recognition particle protein [Francisella novicida FTG] Length = 458 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 101/305 (33%), Positives = 155/305 (50%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ I L ++ ++ L D+ L+ +D+ + V +K + + K Sbjct: 2 FTSLSEKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIANIKEKAIG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V Q + V + I K L + P N + P VIL+ G+ G GKTT KL Sbjct: 62 EEVKKSLTPDQTFISFVKKEIEKALGEEAVPINLK-TQPPAVILMAGLQGAGKTTSTAKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KVM+ + D +R AAIDQL+ A+ + +F S+ + A K A+ Sbjct: 121 AKYLKEQHKKKVMVVSADVYRPAAIDQLRTLANSLNVEFFESDASQQPEDIVTAAIKTAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K +DVLIIDTAGRLH ++ +M I ++ ++ K P +D+ TGQ+A + Sbjct: 181 TKLIDVLIIDTAGRLHIDNDMMDEIKQIHKIAK------PIETFFTVDSMTGQDAAVTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGVGEKTDALEPFHPDRVASKI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|256379939|ref|YP_003103599.1| signal recognition particle-docking protein FtsY [Actinosynnema mirum DSM 43827] gi|255924242|gb|ACU39753.1| signal recognition particle-docking protein FtsY [Actinosynnema mirum DSM 43827] Length = 490 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 110/271 (40%), Positives = 157/271 (57%), Gaps = 11/271 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107 ++ED L+ +D+G AV ++VE L + A+ V R L+ ++L+ P Sbjct: 223 DVEDTLLMADLGAAVTMQVVEALRQQIAARGV---RTPEQARTLLREVLVDALHPSMDRS 279 Query: 108 SH------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 H +P V+LVVGVNGVGKTT GKL++ + G V+L A DTFR+AA DQL W Sbjct: 280 LHALPHDGKPAVLLVVGVNGVGKTTTTGKLARVLIADGRTVLLGAADTFRAAAADQLATW 339 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 R A V G D A++A++A KQ + VD +++DTAGRLH + LM +GK+ RV Sbjct: 340 GSRVGARTVRGPEGGDPASVAFDAVKQGVGEGVDTVLVDTAGRLHTKTGLMDELGKVKRV 399 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 +++ VL VLDATTGQN L Q +F V TG+++TK+DGTA+GG + + Sbjct: 400 VEKQ--TKVDEVLLVLDATTGQNGLTQARVFSEVVDVTGIVLTKLDGTAKGGIVFQVQRE 457 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +PV +G+GEG +DL PF F + G Sbjct: 458 LGVPVKLVGLGEGADDLAPFEPAAFVDALLG 488 >gi|118575528|ref|YP_875271.1| signal recognition particle GTPase [Cenarchaeum symbiosum A] gi|118194049|gb|ABK76967.1| signal recognition particle GTPase [Cenarchaeum symbiosum A] Length = 422 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 143/278 (51%), Gaps = 20/278 (7%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW- 105 +ELE L+ SD+ VA I E+L + V + V E + ++ L F+ Sbjct: 3 DELEISLLESDVAAEVADSIKEDLKGRLVGTSVDKHVIGEHVRESLIGIISDL---FDGA 59 Query: 106 ---DFSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 D R P++I+ VG+NG GKTT + K++ + D+ L V+LAA DTFR+ AI Sbjct: 60 GAVDLLERIRAKKDDPYIIVFVGINGTGKTTSVAKIAHMLRDSKLSVVLAAADTFRAGAI 119 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 +QL+ A R + V GSD AA+A +A A++ VD +++DTAGR+ + LM I Sbjct: 120 EQLREHAKRLNLKIVAQNYGSDPAAVARDAVLYARSHGVDCVLVDTAGRMQTSKNLMEQI 179 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 K+IRV++ P + V D+ G + + Q FH I+TK D ARGG Sbjct: 180 EKIIRVVQ------PDLKIFVGDSLAGNDTVNQAGEFHEHIKFDCSILTKNDADARGGAA 233 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 + IV T PV ++G G+ D+ PF + F + G Sbjct: 234 LSIVKTTSTPVIYVGTGQEYGDIRPFSKETFIETVFGS 271 >gi|240947853|ref|ZP_04752293.1| signal recognition particle GTPase [Actinobacillus minor NM305] gi|240297815|gb|EER48251.1| signal recognition particle GTPase [Actinobacillus minor NM305] Length = 463 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 98/305 (32%), Positives = 159/305 (52%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + +I RL +D +++ L ++ L+ +D+ + V ++ + ++ + Sbjct: 2 FENLSDRLSKTLKNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERAIG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V+ Q L V + K + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 EEVNKSLTPGQEFLKIVQAELEKAMGEANEGLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KV++ + D +R AAI QL+ A+ DF +E +A A K A+ Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVEIAEAALKHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DVLI+DTAGRLH + +M I ++ VL P L +DA TGQ+A + Sbjct: 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLN------PIETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRIASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|332183991|gb|AEE26245.1| Signal recognition particle, subunit Ffh SRP54 [Francisella cf. novicida 3523] Length = 458 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 100/305 (32%), Positives = 155/305 (50%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ I L ++ ++ L D+ L+ +D+ + V +K + + K Sbjct: 2 FTSLSEKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIANIKEKAIG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V Q + V + I K L + P N + P +IL+ G+ G GKTT KL Sbjct: 62 EEVKKSLTPDQTFISFVKKEIEKALGEEAVPINLK-TQPPAIILMAGLQGAGKTTSTAKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KVM+ + D +R AAIDQL+ A+ + +F S+ + A K A+ Sbjct: 121 AKYLKEQHKKKVMVVSADVYRPAAIDQLRTLANSLNVEFFESDASQQPQDIVTAAIKTAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K +DVLIIDTAGRLH ++ +M I ++ ++ K P +D+ TGQ+A + Sbjct: 181 TKLIDVLIIDTAGRLHIDNDMMDEIKQIHKIAK------PIETFFTVDSMTGQDAAVTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGVGEKTDALEPFHPDRVASKI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|322513256|ref|ZP_08066380.1| signal recognition particle protein [Actinobacillus ureae ATCC 25976] gi|322120963|gb|EFX92810.1| signal recognition particle protein [Actinobacillus ureae ATCC 25976] Length = 498 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 98/305 (32%), Positives = 159/305 (52%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + +I RL +D +++ L ++ L+ +D+ + V ++ + ++ + Sbjct: 35 FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERAIG 94 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V+ Q L V + K + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 95 EEVNKSLTPGQEFLKVVQSELEKAMGEANEELNL-ATQPPAVILMAGLQGAGKTTSVGKL 153 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KV++ + D +R AAI QL+ A+ DF +E +A A K A+ Sbjct: 154 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVEIAELALKHAK 213 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DVLI+DTAGRLH + +M I ++ VL P L +DA TGQ+A + Sbjct: 214 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLN------PIETLFTVDAMTGQDAANTAK 267 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 268 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASRI 327 Query: 311 TGCLD 315 G D Sbjct: 328 LGMGD 332 >gi|126460434|ref|YP_001056712.1| signal recognition particle-docking protein FtsY [Pyrobaculum calidifontis JCM 11548] gi|126250155|gb|ABO09246.1| signal recognition particle-docking protein FtsY [Pyrobaculum calidifontis JCM 11548] Length = 305 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 96/282 (34%), Positives = 147/282 (52%), Gaps = 32/282 (11%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEELLTK-------RYA-KDVSVQRVLYDVSELIH 93 V E + DL L+ SD+ V VA +VEEL + R+ K+ +V+R + D Sbjct: 30 VEEFVTDLYLELVESDVAVEVADALVEELKRRLVGLKVPRFGDKEGAVKRAVVD------ 83 Query: 94 KMLMPLSKPFNWDFSH---------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 +L LS + DF RP V++ +G NG GKTT + KL+ + + G V+ Sbjct: 84 SVLQILSDVPDVDFYEEGGKLLDRARPVVVMFLGPNGYGKTTTLAKLAYHLMERGYTVVG 143 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 AA DTFR+ A +QL+ R + G+D A++A++A + A+++ ++IDTAGR Sbjct: 144 AAADTFRAGAREQLEEHGRRVGFKVIGGPYGADPASVAFDAVQHARSRGHHFVLIDTAGR 203 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 +H ++ LM + K+ RV + PH + V DA G AL + G+I T Sbjct: 204 MHTDANLMEELRKIQRVAE------PHFSIFVFDAQLGNEALEIARYYSKYVRIDGMIAT 257 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 K+D +GG ++ + T K PVYFLGVG+ DL FV D+ Sbjct: 258 KVDAYPKGGSILTFMYTLKRPVYFLGVGQSYKDLVKFVKLDY 299 >gi|167627998|ref|YP_001678498.1| signal recognition particle protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597999|gb|ABZ87997.1| signal recognition particle protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 458 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 99/305 (32%), Positives = 155/305 (50%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ I L ++ ++ L D+ L+ +D+ + V +K +E + K Sbjct: 2 FTSLSDKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIENIKQKAIG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V Q + V + I + L + P N + P +IL+ G+ G GKTT KL Sbjct: 62 EEVKKSLTPDQTFISFVKKEIERALGEEAVPINLK-TQPPAIILMAGLQGAGKTTSTAKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KVM+ + D +R AAIDQL+ A+ + +F S+ + EA + A+ Sbjct: 121 AKYLKEQYKKKVMVVSADVYRPAAIDQLRTLANSLNIEFFESDTSQKPDYIVTEAIRAAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K +DVLIIDTAGRLH +S +M I ++ ++ P +D+ TGQ+A + Sbjct: 181 TKLIDVLIIDTAGRLHIDSNMMDEIKQIHKIAN------PIETFFTVDSMTGQDAAITAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK DG ARGG + I P+ FLG GE + LEPF ++ I Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGTGEKTDALEPFHPDRVASKI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|13541823|ref|NP_111511.1| signal recognition particle protein Srp54 [Thermoplasma volcanium GSS1] gi|21362960|sp|Q979Y8|SRP54_THEVO RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|14325260|dbj|BAB60164.1| signal recognition particle protein srp54 [Thermoplasma volcanium GSS1] Length = 455 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 101/304 (33%), Positives = 155/304 (50%), Gaps = 22/304 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 S S L+E I I S +D + ++L+ +L+++D+ V I +E+ + Sbjct: 3 LESLSSSLRETIRKITGSTYIDKNTVKEISKDLQRILLKADVNVQTVLNITKEMERRALE 62 Query: 77 KD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 + V + Y V + ++L L +P N + +P I++VG+ G GKTT GKLS+ Sbjct: 63 EKPPVGMAHQDYMVKIIYEELLKILGEPSNVEL--KPQTIMLVGLYGHGKTTSAGKLSRF 120 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL---AYEAFKQAQA 191 GL L A D R AA +QL+ A+ +A F D + E K AQ Sbjct: 121 FMKKGLSAGLIAADVHRYAAYEQLQQIAESVNAKFYGDPKEKDPVKIIKNGLEVLKDAQV 180 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K IIDT+GR +S L+ I ++ +K P VL V+DAT GQ A + + Sbjct: 181 K-----IIDTSGRDSLDSDLIEEIRRIKEAVK------PDQVLMVIDATMGQQAGPESKA 229 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 + G TG+I+TKMDGTA+GGG + V ++P+YF+G GE ++D+E F K F + + Sbjct: 230 INDAVGVTGIIITKMDGTAKGGGALSAVAKMRVPIYFIGTGEHMDDMEIFDPKKFLSRLL 289 Query: 312 GCLD 315 G D Sbjct: 290 GLGD 293 >gi|219871638|ref|YP_002476013.1| signal recognition particle GTPase [Haemophilus parasuis SH0165] gi|219691842|gb|ACL33065.1| signal recognition particle GTPase [Haemophilus parasuis SH0165] Length = 460 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 98/305 (32%), Positives = 159/305 (52%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + +I RL +D +++ L ++ L+ +D+ + V ++ + ++ + Sbjct: 2 FENLSDRLSKTLKNITGKGRLTEDNIKDTLREVRIALLEADVALPVVREFINKVKERAIG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V+ Q L V + K + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 EEVNKSLTPGQEFLKIVQAELEKAMGEANEGLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KV++ + D +R AAI QL+ A+ DF +E +A A K A+ Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVDIAEAALKHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DVLI+DTAGRLH + +M I ++ VL P L +DA TGQ+A + Sbjct: 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLN------PIETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRIASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|161527904|ref|YP_001581730.1| signal recognition particle-docking protein FtsY [Nitrosopumilus maritimus SCM1] gi|160339205|gb|ABX12292.1| signal recognition particle-docking protein FtsY [Nitrosopumilus maritimus SCM1] Length = 513 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 115/206 (55%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P +IL +G+NG GKTT + K++ + V++AA DTFR+ AI+QL+ +R + Sbjct: 104 QPFLILFLGINGTGKTTSLAKVAHMLQQEKYSVVVAAADTFRAGAIEQLREHTNRLNLKL 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V SD AA+A +A A++ K DV++IDTAGR+ + LM I K+ +V+ Sbjct: 164 VAQNYNSDPAAVARDAVLYAKSHKTDVVLIDTAGRMQTSENLMQQIEKITKVVN------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P + V D+ G + + Q FHA G I+TK D ARGG + IV PV ++ Sbjct: 218 PDLKIFVGDSLAGNDTVNQAREFHAHTNFHGSILTKSDADARGGAALSIVKVTSTPVMYV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVG+ DL+PF K F + G LD Sbjct: 278 GVGQEYPDLKPFDKKTFLETVFGNLD 303 >gi|52840645|ref|YP_094444.1| signal recognition particle protein Ffh [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627756|gb|AAU26497.1| signal recognition particle protein Ffh [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 458 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 94/290 (32%), Positives = 156/290 (53%), Gaps = 24/290 (8%) Query: 39 RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87 R +D ++ L ++ LI +D+ + V ++ +E++ K ++V + ++++D Sbjct: 21 RLTEDNIQHALREVRLSLIEADVALPVIKEFIEQVKQKSLGQEVLTSLNPDQAFIKIVHD 80 Query: 88 VSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLA 145 ELIH M ++ D+ + P V L+ G+ G GKTT KL++ + + KVM+A Sbjct: 81 --ELIHVMG---NERVELDYKTQPPAVFLMAGLQGSGKTTSTAKLARYLKETENKKVMMA 135 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 + D +R AAI QLK+ A++ F S+ +A +A + A+ + VDVLI+DTAGRL Sbjct: 136 SVDVYRPAAIHQLKVLAEQIDVAFFDSDPNEQPIKIAQKALESARKQYVDVLILDTAGRL 195 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 H + +M+ I + + + P L V+D+ TGQ+A + FH TG+I+TK Sbjct: 196 HVDEDMMSEIKSLHKAVN------PIETLFVVDSMTGQDAANTAKAFHEALPLTGVILTK 249 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG ARGG + + P+ F+G GE I LEPF + ++ I G D Sbjct: 250 TDGDARGGAALSVKQITGKPIKFIGSGEKIEALEPFHPERIASRILGMGD 299 >gi|288574569|ref|ZP_06392926.1| signal recognition particle protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570310|gb|EFC91867.1| signal recognition particle protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 450 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 98/277 (35%), Positives = 153/277 (55%), Gaps = 20/277 (7%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-------QRVLYDVSELIHKMLMPLS 100 E+ L+ +D+ V + +VE + +R A + SV Q+V+ V E + ++ Sbjct: 33 EVRRALLEADVNYKVVKGLVENI--RRRAMERSVLDSITPGQQVVAVVYEELMDLMGSEP 90 Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 KP P ++++VG+ G GKTT KL+K++S G K ++ A D R AA+DQL++ Sbjct: 91 KPLTIS-PKPPTLMMMVGLQGGGKTTSTVKLAKRLS-KGHKPLVVACDLRRPAAVDQLRV 148 Query: 161 WADRTSADFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM- 218 A+ F E G SD + A + A+ + +DV++ DTAGRL + +MA + M Sbjct: 149 LAESAGVGFYGPEKGESDVLNVIDGALRYARDRLMDVILFDTAGRLTVDDEMMAELDAMK 208 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 R+ APH +L V+DA TGQ A+ E FH+ TG++++K+DG ARGG + + Sbjct: 209 ARI-------APHEILLVVDAMTGQEAVSVSEAFHSRMDLTGVVLSKVDGDARGGAALAV 261 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + T +P+ F GVGEGI+ LE F AK + I G D Sbjct: 262 LATTGVPIKFAGVGEGIDALEVFDAKRMAERIMGMGD 298 >gi|113461570|ref|YP_719639.1| signal recognition particle subunit FFH/SRP54 (srp54) [Haemophilus somnus 129PT] gi|112823613|gb|ABI25702.1| signal recognition particle subunit FFH/SRP54 (srp54) [Haemophilus somnus 129PT] Length = 458 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 98/305 (32%), Positives = 158/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + +I RL +D +++ L ++ L+ +D+ + V ++ + ++ + Sbjct: 2 FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFIHQVKERAIG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V+ Q L V + K + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 EEVNKSLTPGQEFLKIVQTELEKAMGVANEKLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + K+M+ + D +R AAI QL+ A DF S + +A A +A+ Sbjct: 121 AKFLKENYKKKIMVVSVDVYRPAAIKQLETLAQSIGVDFYPSNVSQKPVEIARTALAEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVLI+DTAGRLH + +M I ++ VL P L +DA TGQ+A + Sbjct: 181 LKFYDVLIVDTAGRLHVDDTMMEEIQQIHTVLN------PIETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE LEPF ++ I Sbjct: 235 AFNEALPLTGIILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|303253167|ref|ZP_07339316.1| signal recognition particle protein (sigma-54 like protein) [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248810|ref|ZP_07530823.1| Signal recognition particle protein [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307262237|ref|ZP_07543886.1| Signal recognition particle protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|302647849|gb|EFL78056.1| signal recognition particle protein (sigma-54 like protein) [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854737|gb|EFM86927.1| Signal recognition particle protein [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306868000|gb|EFM99827.1| Signal recognition particle protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 463 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 99/305 (32%), Positives = 158/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + +I RL +D +++ L ++ L+ +D+ + V ++ + ++ + Sbjct: 2 FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERALG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q L V + + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 TEVNKSLTPGQEFLKIVQSELEIAMGEANEELNL-ATQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KV++ + D +R AAI QL+ A+ DF +E +A A K A+ Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETTQKPVEIAELALKYAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DVLI+DTAGRLH + +M I ++ RVL P L +DA TGQ+A + Sbjct: 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHRVLN------PIETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE N LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTNALEPFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|163839816|ref|YP_001624221.1| signal recognition particle receptor [Renibacterium salmoninarum ATCC 33209] gi|162953292|gb|ABY22807.1| signal recognition particle receptor [Renibacterium salmoninarum ATCC 33209] Length = 395 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 118/278 (42%), Positives = 172/278 (61%), Gaps = 14/278 (5%) Query: 37 SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96 SS ++D+GV EELE+ L+ +DIG + ++VE L R + R +V ++ + L Sbjct: 118 SSDKIDEGVWEELEETLLLADIGTQPSLELVEIL---RERVKIMGSRSPQEVQAMLREEL 174 Query: 97 MPLSKPFNWDFS-------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 + L P D S P ++LVVGVNGVGKTT +GKL++ + V+L A DT Sbjct: 175 IKLVDP-GMDRSLAVSRQGELPAIVLVVGVNGVGKTTTVGKLARVLVAEDKDVLLGAADT 233 Query: 150 FRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 FR+AA +QL W R V S++ G+D A++A+EA K ++VDV++IDTAGRL N Sbjct: 234 FRAAAAEQLATWGARVGVPTVKSDVDGADPASVAFEAVKSGIEQEVDVVMIDTAGRLQNK 293 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM +GK+ RV+++L VL VLDATTGQN L Q ++F V TG+++TK+DG Sbjct: 294 VGLMDELGKVKRVIEKL--ANVGEVLLVLDATTGQNGLTQAKVFSEVVDITGIVLTKLDG 351 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TA+GG ++ I + +PV +G+GEG +DL PF A+ F Sbjct: 352 TAKGGIVVAIQKSLGVPVKLVGLGEGADDLAPFDAEQF 389 >gi|145591970|ref|YP_001153972.1| GTP-binding signal recognition particle [Pyrobaculum arsenaticum DSM 13514] gi|158514165|sp|A4WLQ3|SRP54_PYRAR RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|145283738|gb|ABP51320.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pyrobaculum arsenaticum DSM 13514] Length = 433 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 90/232 (38%), Positives = 123/232 (53%), Gaps = 12/232 (5%) Query: 84 VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143 VLY+ EL+ LM +P + + +P+++L++GV G GKTT KL++ + G KV Sbjct: 76 VLYE--ELVK--LMGGEQPAEFKPTKKPYIVLLLGVEGSGKTTTSAKLARYLMKRGYKVG 131 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 + DT R AA DQL+ A++ A F G DA +A A K VDVLIIDTAG Sbjct: 132 MVETDTIRPAAFDQLRQLAEKIGAPFYGERDGKDAVEIARRGV--ANLKGVDVLIIDTAG 189 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 R N L+ + + D P V+ V+DAT G+ A Q E F +I+ Sbjct: 190 RHRNEEALLQEVKAI------YDAVNPDEVVLVVDATVGKLAAAQAEAFMKYLPIHTVII 243 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TKMD TARGGG + V V F+GVGE + +LEPF + F A + G D Sbjct: 244 TKMDSTARGGGALAAVAKTGARVKFIGVGEDVEELEPFNPRKFVARLLGMGD 295 >gi|241668552|ref|ZP_04756130.1| signal recognition particle protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877087|ref|ZP_05249797.1| signal recognition particle protein ffh [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843108|gb|EET21522.1| signal recognition particle protein ffh [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 458 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 99/305 (32%), Positives = 155/305 (50%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ I L ++ ++ L D+ L+ +D+ + V +K +E + K Sbjct: 2 FTSLSDKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIENIKQKAIG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V Q + V + I + L + P N + P +IL+ G+ G GKTT KL Sbjct: 62 EEVKKSLTPDQTFISFVKKEIERALGEEAVPINLK-TQPPAIILMAGLQGAGKTTSTAKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KVM+ + D +R AAIDQL+ A+ + +F S+ + EA + A+ Sbjct: 121 AKYLKEQHKKKVMVVSADVYRPAAIDQLRTLANSLNIEFFESDTSQKPDYIVTEAIRAAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K +DVLIIDTAGRLH +S +M I ++ ++ P +D+ TGQ+A + Sbjct: 181 TKLIDVLIIDTAGRLHIDSNMMDEIKQIHKIAN------PIETFFTVDSMTGQDAAITAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK DG ARGG + I P+ FLG GE + LEPF ++ I Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGTGEKTDALEPFHPDRVASKI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|255578951|ref|XP_002530328.1| signal recognition particle protein, putative [Ricinus communis] gi|223530132|gb|EEF32044.1| signal recognition particle protein, putative [Ricinus communis] Length = 572 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 100/308 (32%), Positives = 157/308 (50%), Gaps = 21/308 (6%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----- 70 +LT G S KLK T ++ + + +R+ + L+ +D+ + V ++ V+ + Sbjct: 88 QLTTGLESAWSKLKGAET--LTKENIAEPMRD-MRRALLEADVSLPVVRRFVQSVTDEAI 144 Query: 71 ---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L + D + ++++D EL+ M +S+ +S P VIL+ G+ GVGKTTV Sbjct: 145 GVGLIRGVKPDQQLVKIVHD--ELVKLMGGEVSELVFAKYS--PTVILLAGLQGVGKTTV 200 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 KL+ + G ML AGD +R AAIDQL I ++ + +A + Sbjct: 201 CAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTEGTEVKPSEIAKRGLE 260 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 +A+ K +DV+I+DTAGRL + +M + ++ RVL P VL V+DA TGQ A Sbjct: 261 EAKKKNIDVVIVDTAGRLQIDKGMMDELKEVKRVLN------PTEVLLVVDAMTGQEAAA 314 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 V F+ G TG I+TK+DG +RGG + + P+ +G GE + DLEPF + Sbjct: 315 LVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMA 374 Query: 308 AVITGCLD 315 I G D Sbjct: 375 GRILGMGD 382 >gi|167854879|ref|ZP_02477655.1| signal recognition particle protein (sigma-54 like protein) [Haemophilus parasuis 29755] gi|167853946|gb|EDS25184.1| signal recognition particle protein (sigma-54 like protein) [Haemophilus parasuis 29755] Length = 463 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 98/305 (32%), Positives = 159/305 (52%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + +I RL +D +++ L ++ L+ +D+ + V ++ + ++ + Sbjct: 2 FENLSDRLSKTLKNITGKGRLTEDNIKDTLREVRIALLEADVALPVVREFINKVKERAIG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V+ Q L V + K + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 EEVNKSLTPGQEFLKIVQTELEKAMGEANEGLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KV++ + D +R AAI QL+ A+ DF +E +A A K A+ Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVDIAEAALKHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DVLI+DTAGRLH + +M I ++ VL P L +DA TGQ+A + Sbjct: 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLN------PIETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRIASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|323302581|gb|EGA56388.1| Srp54p [Saccharomyces cerevisiae FostersB] Length = 452 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 92/282 (32%), Positives = 143/282 (50%), Gaps = 33/282 (11%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS------------VQRVLYD-VSELI------H 93 L+ SD+ +A+ K+ + ++ +++ S +Q+ ++D + +L+ Sbjct: 40 LLESDVNIALVSKLRNNIRSQLLSENRSEKSTTNAQTKKLIQKTVFDELCKLVTCEGSEE 99 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 K +P + N +I+ VG+ G GKTT KL+ S G KV L DTFR+ Sbjct: 100 KAFVPKKRKTN--------IIMFVGLQGSGKTTSCTKLAVYYSKRGFKVGLVCADTFRAG 151 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A DQLK A R F S +D A +A E + + +K D++I+DT+GR H L Sbjct: 152 AFDQLKQNAIRARIPFYGSYTETDPAKVAEEGINKFKKEKFDIIIVDTSGRHHQEEELFQ 211 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + ++ V+K P+ + VLDA+ GQ A +Q + F + +I+TKMDG ARGG Sbjct: 212 EMIEISNVIK------PNQTIMVLDASIGQAAEQQSKAFKESSDFGAIILTKMDGHARGG 265 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G I V P+ F+G GE I+DLE F K F + + G D Sbjct: 266 GAISAVAATNTPIIFIGTGEHIHDLEKFSPKSFISKLLGIGD 307 >gi|54026136|ref|YP_120378.1| putative signal recognition particle [Nocardia farcinica IFM 10152] gi|54017644|dbj|BAD59014.1| putative signal recognition particle [Nocardia farcinica IFM 10152] Length = 514 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 113/267 (42%), Positives = 161/267 (60%), Gaps = 13/267 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKP 102 EE+ED L+ +D+G A +VE L + A+ V ++VL DV L+ + L + Sbjct: 248 EEIEDTLVLADLGTASTTAVVERLREEMAARSVRTPEQARQVLRDV--LVEALRPELDRS 305 Query: 103 FN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 P ++LVVGVNG GKTT GKL++ + G +V+L A DTFR+AA DQL+ W Sbjct: 306 IRALPHPDHPAILLVVGVNGTGKTTTTGKLARVLVADGRRVLLGAADTFRAAAADQLQTW 365 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 +R A+ V + G+D AA+A++A + VD ++IDTAGRLH + LM +GK+ RV Sbjct: 366 GERVGAETVRGKEGADPAAVAFDAVAAGIERGVDAVLIDTAGRLHTKTGLMDELGKVKRV 425 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 +++ A VL VLDAT GQN L Q +F V TG+++TK+DGTA+GG I V Sbjct: 426 VEKK--AAVDEVLLVLDATVGQNGLMQARVFAEVVDITGVVLTKLDGTAKGG--IVFQVQ 481 Query: 282 HK--IPVYFLGVGEGINDLEPFVAKDF 306 H+ +PV +G+GEG +DL PF A F Sbjct: 482 HELGVPVKLVGLGEGADDLAPFEAGAF 508 >gi|167045193|gb|ABZ09853.1| putative SRP54-type protein, GTPase domain protein [uncultured marine crenarchaeote HF4000_APKG8O8] Length = 494 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 88/274 (32%), Positives = 146/274 (53%), Gaps = 23/274 (8%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS---ELIHKMLMPL 99 D ++ +L+ LI GV V +K +E+ + K +++S ++D + +LI + + Sbjct: 48 DNIKSDLKKKLI----GVKVNKKEIEDFVRKSLIENISS---MFDEAGSFDLISDIKLKT 100 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 P++IL VG+NG GKTT I K++ + + +++AA DTFR+ AI+QL+ Sbjct: 101 D-------PQDPYLILFVGINGTGKTTTIAKIASLLQKNKISLVVAASDTFRAGAIEQLR 153 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 D+ + V GSD AA+A++A A++ KVD ++ID+AGR+ N LM I K+ Sbjct: 154 GHTDKLNLKLVAQNYGSDPAAVAHDALLYAKSHKVDCVLIDSAGRMQTNKNLMEQITKIS 213 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 +V+ P + V D+ G + + Q F+ G ++TK D +RGG + IV Sbjct: 214 KVVN------PDLKIFVGDSLAGNDTVSQAREFYKHTNFDGAVLTKSDADSRGGAALSIV 267 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 K PV ++G G+G +DLE F F + G Sbjct: 268 AVTKKPVVYIGTGQGYDDLELFNKDTFLEKVFGS 301 >gi|54296436|ref|YP_122805.1| hypothetical protein lpp0467 [Legionella pneumophila str. Paris] gi|53750221|emb|CAH11615.1| hypothetical protein lpp0467 [Legionella pneumophila str. Paris] Length = 458 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 97/309 (31%), Positives = 163/309 (52%), Gaps = 25/309 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L ++ RL +D ++ L ++ LI +D+ + V ++ +E++ K Sbjct: 2 FENLTERLTRTFKNLRGQGRLTEDNIQHALREVRLSLIEADVALPVIKEFIEQVKQKSLG 61 Query: 77 KDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTV 127 ++V + ++++D ELIH M + D+ + P V L+ G+ G GKTT Sbjct: 62 QEVLTSLNPDQAFIKIVHD--ELIHVMG---DERVELDYKTQPPAVFLMAGLQGSGKTTS 116 Query: 128 IGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL++ + + KVM+A+ D +R AAI QLK+ A++ F S+ +A +A Sbjct: 117 TAKLARYLKETENKKVMMASVDVYRPAAIHQLKVLAEQIDVAFFDSDPNEQPIKIAQKAL 176 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+ + VDVLI+DTAGRLH + +M+ I + + + P L V+D+ TGQ+A Sbjct: 177 ESARKQYVDVLILDTAGRLHVDEDMMSEIKSLHKAVN------PIETLFVVDSMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + FH TG+I+TK DG ARGG + + P+ F+G GE I LEPF + Sbjct: 231 NTAKAFHEALPLTGVILTKTDGDARGGAALSVKQITGKPIKFIGSGEKIEALEPFHPERI 290 Query: 307 SAVITGCLD 315 ++ I G D Sbjct: 291 ASRILGMGD 299 >gi|76800746|ref|YP_325754.1| signal recognition particle receptor SRalpha [Natronomonas pharaonis DSM 2160] gi|76556611|emb|CAI48182.1| signal recognition particle receptor SRalpha [Natronomonas pharaonis DSM 2160] Length = 368 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 93/255 (36%), Positives = 137/255 (53%), Gaps = 19/255 (7%) Query: 57 DIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-- 110 D+ ++VAQ+I EEL+ + + S ++V V I + L + +DF R Sbjct: 111 DVEMSVAQEITDRIREELVGETRKQVESGEQV---VERAIAEALRDVISVGQFDFESRIA 167 Query: 111 ----PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P I+ GVNGVGKTT I KL++ + G +LA GDT+R+ A +Q++ AD Sbjct: 168 DAEKPVTIVFTGVNGVGKTTSIAKLARWFEERGHSSVLANGDTYRAGANEQIEEHADALD 227 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + E G D AA+ Y+A + A+A VDV++ DTAGRLH LMA + K+ RV+ Sbjct: 228 KKIITHEQGGDPAAVIYDAVEYAEANDVDVVLGDTAGRLHTADDLMAQLEKIDRVVD--- 284 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V +A GQ+A + + F+ A G I+TK D ++GG I I P+ Sbjct: 285 ---PDLTLFVDEAVAGQDATNRAKEFNDAAEIDGAILTKADADSQGGAAISIAHVTGKPI 341 Query: 287 YFLGVGEGINDLEPF 301 FLG G+G +D+E F Sbjct: 342 LFLGTGQGYDDIERF 356 >gi|307609209|emb|CBW98673.1| hypothetical protein LPW_04821 [Legionella pneumophila 130b] Length = 458 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/290 (32%), Positives = 155/290 (53%), Gaps = 24/290 (8%) Query: 39 RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87 R +D ++ L ++ LI +D+ + V ++ +E++ K ++V + ++++D Sbjct: 21 RLTEDNIQHALREVRLSLIEADVALPVIKEFIEQVKQKSLGQEVLTSLNPDQAFIKIVHD 80 Query: 88 VSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLA 145 ELIH M + D+ + P V L+ G+ G GKTT KL++ + + KVM+A Sbjct: 81 --ELIHVMG---DERVELDYKTQPPAVFLMAGLQGSGKTTSTAKLARYLKETENKKVMMA 135 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 + D +R AAI QLK+ A++ F S+ +A +A + A+ + VDVLI+DTAGRL Sbjct: 136 SVDVYRPAAIHQLKVLAEQIDVAFFDSDPNEQPIKIAQKALESARKQYVDVLILDTAGRL 195 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 H + +M+ I + + + P L V+D+ TGQ+A + FH TG+I+TK Sbjct: 196 HVDEDMMSEIKSLHKAVN------PIETLFVVDSMTGQDAANTAKAFHEALPLTGVILTK 249 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG ARGG + + P+ F+G GE I LEPF + ++ I G D Sbjct: 250 TDGDARGGAALSVKQITGKPIKFIGSGEKIEALEPFHPERIASRILGMGD 299 >gi|254785308|ref|YP_003072737.1| signal recognition particle protein [Teredinibacter turnerae T7901] gi|237684927|gb|ACR12191.1| signal recognition particle protein [Teredinibacter turnerae T7901] Length = 523 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 98/323 (30%), Positives = 167/323 (51%), Gaps = 18/323 (5%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLD-DGVREELEDL---LIRSDI 58 +Q A+E+L R+ F + S +L + I RL+ D +++ L D+ L+ +D+ Sbjct: 40 SQHRATENLHRNRQFAM-FDNLSDRLTRSLKKITGKSRLNHDNIQDALRDVRKALLEADV 98 Query: 59 GVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113 + V + + + + ++VS Q+ L V + +++ ++ N + P V Sbjct: 99 ALPVVKDFINHVRKRAQGQEVSRALNPGQQFLKIVESELTELMGAANESLNL-ATQPPAV 157 Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +L+ G+ G GKTT + KL++ + + KVM+ + D +R AAI QL+ A A+F S Sbjct: 158 VLMAGLQGAGKTTTVAKLARFLQEKHKKKVMVVSADVYRPAAIKQLETLAAEVEAEFFPS 217 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 A+A A +QA+ +DVL++DTAGRLH + LMA I + + + P Sbjct: 218 SSDQQPVAIAKAAIEQAKKSHMDVLLVDTAGRLHIDEQLMAEIQGLHKAVN------PVE 271 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 L V+D+ GQ+A+ + F+ TG+++TK DG ARGG + + P+ F+GVG Sbjct: 272 TLFVIDSMIGQDAVNTAKAFNDALPLTGVVLTKTDGDARGGAALSVRHITGKPIKFMGVG 331 Query: 293 EGINDLEPFVAKDFSAVITGCLD 315 E LEPF + ++ I G D Sbjct: 332 EKTEALEPFHPERVASRILGMGD 354 >gi|315230267|ref|YP_004070703.1| FtsY-like signal recognition particle receptor protein subunit alpha [Thermococcus barophilus MP] gi|315183295|gb|ADT83480.1| FtsY-like signal recognition particle receptor protein, alpha subunit [Thermococcus barophilus MP] Length = 300 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 79/196 (40%), Positives = 116/196 (59%), Gaps = 10/196 (5%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 +P VI+ VG NG GKTT I KL+ + GL ++AA DTFR+ AI+Q++ A R Sbjct: 101 KEKPFVIVFVGFNGSGKTTTIAKLAHWLKKHGLSSVIAASDTFRAGAIEQVEEHARRVGV 160 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + G+D AA+AY+A + A+A+ VDV+++DTAGR N LM + K++RV K Sbjct: 161 KVIKHRYGADPAAVAYDAIQHAKARGVDVVLVDTAGRNELNRNLMDEMKKIVRVTK---- 216 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI--P 285 P V+ V DA G + Q F+ G+I+TK+D ARGG + I +H I P Sbjct: 217 --PDLVIFVGDALAGNAIIEQARQFNEAVKIDGVILTKLDADARGGAALSI--SHAIGAP 272 Query: 286 VYFLGVGEGINDLEPF 301 + F+G+G+G +DL+ F Sbjct: 273 ILFVGIGQGYDDLKEF 288 >gi|332967949|gb|EGK07037.1| signal recognition particle protein [Kingella kingae ATCC 23330] Length = 455 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 90/287 (31%), Positives = 156/287 (54%), Gaps = 23/287 (8%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYD-VSELIH 93 +D ++E L ++ L+ +D+ + + + V E L K +A +++ ++ + V+E + Sbjct: 24 EDNIKEALREVRLALLEADVALPIVKDFVKQVKERALGKEFADNLTPEQAFFGIVNEALI 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK--VMLAAGDTFR 151 +++ + N ++ P +L+ G+ G GKTT +GKL+K + D K +++ + D +R Sbjct: 84 ELMGKENSALNL-AANPPATVLMAGLQGAGKTTTVGKLAKLLKDQNKKKKILVVSADVYR 142 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 AAI+QLK+ A + DF S++ + +A A A+ + DVL++DTAGRL ++ + Sbjct: 143 PAAIEQLKLLAQQVQVDFFPSDVSQNPVEIAKAAQDFAKKQFYDVLMVDTAGRLAIDAEM 202 Query: 212 MAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 M I + HA P L V+DA GQ+A+ + F TG+I+TKMDG Sbjct: 203 MNEIQAI---------HATINPVETLFVVDAMLGQDAVNTAKAFDEALPLTGVILTKMDG 253 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + T P+ F+G+GE IN LEPF ++ I G D Sbjct: 254 DSRGGAALSVRQTTGKPIKFIGIGEKINGLEPFHPDRIASRILGMGD 300 >gi|261402637|ref|YP_003246861.1| GTP-binding signal recognition particle SRP54 G- domain protein [Methanocaldococcus vulcanius M7] gi|261369630|gb|ACX72379.1| GTP-binding signal recognition particle SRP54 G- domain protein [Methanocaldococcus vulcanius M7] Length = 450 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 96/287 (33%), Positives = 155/287 (54%), Gaps = 22/287 (7%) Query: 39 RRLDDGVREELEDLLIRSDIGV--------AVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90 R+L V ++++ LI++D+ V + ++ +EE K +K + +++Y+ E Sbjct: 24 RKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYE--E 81 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 L+ K+L +K + + +VIL++G+ G GKTT KL++ + GLK L A DT+ Sbjct: 82 LV-KLLGEEAKKLELN-PKKQNVILLIGIQGSGKTTTAAKLARYVQKRGLKPALIAADTY 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 R AA +QLK A++ E + D + E ++ KK DVLIIDTAGR Sbjct: 140 RPAAYEQLKQLAEKIHVPLYGDETRTKDPVEIVKEGMQKF--KKADVLIIDTAGRHKEEK 197 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG-LIMTKMDG 268 L+ + ++ + P ++ V+D T GQ A Q + F G G +I+TK+DG Sbjct: 198 GLLEEMKQIKEITN------PDEIILVIDGTIGQQARIQAKAFKDAVGEIGSIIVTKLDG 251 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +A+GGG + V + P+ F+GVGEGI+DLEPF K F + + G D Sbjct: 252 SAKGGGALSAVAETQAPIKFIGVGEGIDDLEPFDPKKFISRLLGMGD 298 >gi|302392419|ref|YP_003828239.1| signal recognition particle subunit FFH/SRP54 (srp54) [Acetohalobium arabaticum DSM 5501] gi|302204496|gb|ADL13174.1| signal recognition particle subunit FFH/SRP54 (srp54) [Acetohalobium arabaticum DSM 5501] Length = 453 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 87/268 (32%), Positives = 137/268 (51%), Gaps = 12/268 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + + ++ + K+V Q+V+ V+E + ++ + Sbjct: 39 LLEADVNFKVVKNFISDIEERAVGKEVMDSLTPAQQVIKIVNEELTDLMGGTQSKLSI-A 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P VI++VG+ G GKTT +GKL+K + G + +L AGD +R AAI QL++ +R Sbjct: 98 SDPPTVIMLVGLQGAGKTTTVGKLAKHLHKNGRRPLLVAGDVYRPAAIKQLQVLGERLDQ 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 D +A A++ DV+IIDTAGRLH + LM + + + Sbjct: 158 PVFSMGDKQDPVDIAKAGVSHAESNGRDVVIIDTAGRLHIDEELMGELKDIKAAVN---- 213 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+DA TGQ+A+ E F G G+ +TK+DG ARGG + I P+ Sbjct: 214 --PQEILLVVDAMTGQDAVNVAESFDDALGVDGITLTKLDGDARGGAALSIRKVTGRPIK 271 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G GE ++DLEPF ++ I G D Sbjct: 272 FVGTGEKLDDLEPFHPDRMASRILGMGD 299 >gi|54293394|ref|YP_125809.1| hypothetical protein lpl0443 [Legionella pneumophila str. Lens] gi|53753226|emb|CAH14673.1| hypothetical protein lpl0443 [Legionella pneumophila str. Lens] Length = 458 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 94/290 (32%), Positives = 155/290 (53%), Gaps = 24/290 (8%) Query: 39 RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87 R +D ++ L ++ LI +D+ + V ++ +E++ K ++V + ++++D Sbjct: 21 RLTEDNIQHALREVRLSLIEADVALPVIKEFIEQVKQKSLGQEVLTSLNPDQAFIKIVHD 80 Query: 88 VSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLA 145 ELIH M + D+ + P V L+ G+ G GKTT KL++ + + KVM+A Sbjct: 81 --ELIHVMG---DERVELDYKTQPPAVFLMAGLQGSGKTTSTAKLARYLKETENKKVMMA 135 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 + D +R AAI QLK+ A++ F S+ +A +A + A+ + VDVLI+DTAGRL Sbjct: 136 SVDVYRPAAIHQLKVLAEQIDVAFFDSDPNEQPIKIAQKALESARKQYVDVLILDTAGRL 195 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 H + +M+ I + + + P L V+D+ TGQ+A + FH TG+I+TK Sbjct: 196 HVDEDMMSEIKSLHKAVN------PIETLFVVDSMTGQDAANTAKAFHEALPLTGVILTK 249 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG ARGG + + P+ F+G GE I LEPF + ++ I G D Sbjct: 250 TDGDARGGAALSVKQITGKPIKFIGSGEKIEALEPFHPERIASRILGMGD 299 >gi|261491854|ref|ZP_05988433.1| signal recognition particle protein [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494675|ref|ZP_05991155.1| signal recognition particle protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309640|gb|EEY10863.1| signal recognition particle protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312509|gb|EEY13633.1| signal recognition particle protein [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 470 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 101/306 (33%), Positives = 157/306 (51%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + +I RL +D +++ L ++ L+ +D+ + V + + ++ K A Sbjct: 9 FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFINKV--KERA 66 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPF---NWDFS---HRPHVILVVGVNGVGKTTVIGK 130 V V + L E + + L N + + P VIL+ G+ G GKTT +GK Sbjct: 67 LGVEVNKSLTPGQEFLKIVQSELETAMGEANEELNLAAQPPAVILMAGLQGAGKTTSVGK 126 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L+K + + KV++ + D +R AAI QL+ A+ DF +E A+A A K A Sbjct: 127 LAKFLKERHKKKVLVVSADVYRPAAIKQLQTLAETLKVDFFPTETSQKPVAIAEAALKHA 186 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DVLI+DTAGRLH + +M I ++ VL P L +DA TGQ+A Sbjct: 187 KLNFFDVLIVDTAGRLHVDGEMMEEIQQIHAVLN------PIETLFTVDAMTGQDAANTA 240 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF ++ Sbjct: 241 KAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASR 300 Query: 310 ITGCLD 315 I G D Sbjct: 301 ILGMGD 306 >gi|4538|emb|CAA34781.1| Srh1p [Saccharomyces cerevisiae] Length = 541 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 92/282 (32%), Positives = 143/282 (50%), Gaps = 33/282 (11%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS------------VQRVLYD-VSELI------H 93 L+ SD+ +A+ K+ + ++ +++ S +Q+ ++D + +L+ Sbjct: 40 LLESDVNIALVSKLRNNIRSQLLSENRSEKSTTNAQTKKLIQKTVFDELCKLVTCEGSEE 99 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 K +P + N +I+ VG+ G GKTT KL+ S G KV L DTFR+ Sbjct: 100 KAFVPKKRKTN--------IIMFVGLQGSGKTTSCTKLAVYYSKEGFKVGLVCADTFRAG 151 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A DQLK A R F S +D A +A E + + +K D++I+DT+GR H L Sbjct: 152 AFDQLKQNAIRARIPFYGSYTETDPAKVAEEGINKFKKEKFDIIIVDTSGRHHQEEELFQ 211 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + ++ V+K P+ + VLDA+ GQ A +Q + F + +I+TKMDG ARGG Sbjct: 212 EMIEISNVIK------PNQTIMVLDASIGQAAEQQSKAFKESSDFGAIILTKMDGHARGG 265 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G I V P+ F+G GE I+DLE F K F + + G D Sbjct: 266 GAISAVAATNTPIIFIGTGEHIHDLEKFSPKSFISKLLGIGD 307 >gi|33861842|ref|NP_893403.1| signal recognition particle protein (SRP54) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33640210|emb|CAE19745.1| signal recognition particle protein (SRP54) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 498 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 92/286 (32%), Positives = 152/286 (53%), Gaps = 14/286 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 IS +DD +++ ++ L+ +D+ ++V ++ V ++ K ++V Q+ + V++ Sbjct: 22 ISENNIDDALKQ-VKKALLDADVSLSVVKEFVSDVKDKAIGEEVVRGVNPGQKFIEVVNK 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + ++ + P N + P VIL+ G+ G GKTT GKL + + KV+L A D + Sbjct: 81 ELINIMGNENSPLNKKETT-PTVILMAGLQGAGKTTATGKLGLYLKEKEEKVLLVAADIY 139 Query: 151 RSAAIDQLKIWADRTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 R AA++QLK ++ + F E S +A +A A A +D LI+DTAGRL + Sbjct: 140 RPAAVEQLKTIGNQYDLEVFSAKEKNSKPEEIARDALSYANANNIDTLIVDTAGRLQIDE 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 +M G+M+R+ + P VL V+D+ GQ A + FH G TG I+TK+DG Sbjct: 200 SMM---GEMVRIKQ---VTKPDEVLLVVDSMIGQEAADLTKSFHEKVGITGAILTKLDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + I P+ F+G GE I L+PF + ++ I G D Sbjct: 254 SRGGAALSIRKISGKPIKFIGTGEKIEALQPFHPERMASRILGMGD 299 >gi|300709656|ref|YP_003735470.1| signal recognition particle-docking protein FtsY [Halalkalicoccus jeotgali B3] gi|299123339|gb|ADJ13678.1| signal recognition particle-docking protein FtsY [Halalkalicoccus jeotgali B3] Length = 397 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 96/266 (36%), Positives = 142/266 (53%), Gaps = 13/266 (4%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSK 101 +G ++LE L+ SD+ VAQ+IV L + A Q V V + + + L+ + Sbjct: 126 EGPLDDLEFALLESDVEFTVAQEIVANLRDELENATRGMTQTVEERVDQALREALLEVIS 185 Query: 102 PFNWDFSHR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 +DF R P ++ GVNGVGKTT I KLS+ + + G +LA GDT+R+ A Sbjct: 186 VGQFDFDERIAAAEKPVTLIFTGVNGVGKTTSIAKLSQYLEERGYSTVLANGDTYRAGAN 245 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 +Q++ A + E G D AA+ Y+A + AQA +DV++ DTAGRLH N LM + Sbjct: 246 EQIREHARNLDTKLISHEQGGDPAAVIYDAVEYAQAHGIDVVLGDTAGRLHTNEGLMDQL 305 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 K+ RV+ P L +A GQ+A+++ + F+ A G I+TK D A GG Sbjct: 306 EKIDRVV------GPDMTLFTDEAVAGQDAVQRAKKFNDAAEIDGAILTKADADANGGAA 359 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPF 301 I I P+ FLG G+G +D+E F Sbjct: 360 ISIAYVTGKPILFLGTGQGYDDIERF 385 >gi|332288625|ref|YP_004419477.1| signal recognition particle protein [Gallibacterium anatis UMN179] gi|330431521|gb|AEC16580.1| signal recognition particle protein [Gallibacterium anatis UMN179] Length = 458 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 101/306 (33%), Positives = 156/306 (50%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + +I RL +D ++E L ++ L+ +D+ + V ++ + ++ K A Sbjct: 2 FENLSDRLSRTLRNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFINQV--KERA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPF---NWDF---SHRPHVILVVGVNGVGKTTVIGK 130 V V + L E I + L K N + P VIL+ G+ G GKTT + K Sbjct: 60 LGVEVNKSLTPGQEFIKIVQAELEKAMGEANETLNLATQPPAVILMAGLQGAGKTTSVAK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L+K + KVM+ + D +R AAI QL+ A +A F S+ + A +A Sbjct: 120 LAKFLQQRHKKKVMVVSADVYRPAAIKQLETLAQSVNATFYPSDASQKPEEIVKAALSEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVLI+DTAGRLH + +M I ++ +VL P L +DA TGQ+A Sbjct: 180 KLKFFDVLIVDTAGRLHVDEEMMNEIKQIHQVLN------PIETLFTVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+I+TK+DG ARGG + I P+ FLG+GE + LEPF + ++ Sbjct: 234 KAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGMGEKTDALEPFYPERIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|187931703|ref|YP_001891687.1| signal recognition particle GTPase [Francisella tularensis subsp. mediasiatica FSC147] gi|187712612|gb|ACD30909.1| signal recognition particle GTPase [Francisella tularensis subsp. mediasiatica FSC147] Length = 458 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 100/305 (32%), Positives = 155/305 (50%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ I L ++ ++ L D+ L+ +D+ + V +K + + K Sbjct: 2 FTSLSEKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIANIKEKAIG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V Q + V + I K L + P N + P VIL+ G+ G GKTT KL Sbjct: 62 EEVKKSLTPDQTFISFVKKEIEKALGEEAVPINLK-TQPPAVILMAGLQGAGKTTSTAKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KVM+ + D +R AAIDQL+ A+ + +F S+ + A K A+ Sbjct: 121 AKYLKEQHKKKVMVVSADVYRPAAIDQLRTLANSLNVEFFESDASQQPEDIVTAAIKTAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K +DVLIIDTAGRLH ++ +M I ++ ++ K P +D+ TGQ+A + Sbjct: 181 TKLIDVLIIDTAGRLHIDNDMMDEIKQIHKIAK------PIETFFTVDSMTGQDAAVTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK DG ARGG + I P+ FLGVGE + L+PF ++ I Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGVGEKTDALKPFHPDRVASKI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|323306831|gb|EGA60116.1| Srp54p [Saccharomyces cerevisiae FostersO] Length = 547 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 92/282 (32%), Positives = 143/282 (50%), Gaps = 33/282 (11%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS------------VQRVLYD-VSELI------H 93 L+ SD+ +A+ K+ + ++ +++ S +Q+ ++D + +L+ Sbjct: 40 LLESDVNIALVSKLRNNIRSQLLSENRSEKSTTNAQTKKLIQKTVFDELCKLVTCEGSEE 99 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 K +P + N +I+ VG+ G GKTT KL+ S G KV L DTFR+ Sbjct: 100 KAFVPKKRKTN--------IIMFVGLQGSGKTTSCTKLAVYYSKRGFKVGLVCADTFRAG 151 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A DQLK A R F S +D A +A E + + +K D++I+DT+GR H L Sbjct: 152 AFDQLKQNAIRARIPFYGSYTETDPAKVAEEGINKFKKEKFDIIIVDTSGRHHQEEELFQ 211 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + ++ V+K P+ + VLDA+ GQ A +Q + F + +I+TKMDG ARGG Sbjct: 212 EMIEISNVIK------PNQTIMVLDASIGQAAEQQSKAFKESSDFGAIILTKMDGHARGG 265 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G I V P+ F+G GE I+DLE F K F + + G D Sbjct: 266 GAISAVAATNTPIIFIGTGEHIHDLEKFSPKSFISKLLGIGD 307 >gi|207340327|gb|EDZ68711.1| YPR088Cp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 541 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 92/282 (32%), Positives = 143/282 (50%), Gaps = 33/282 (11%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS------------VQRVLYD-VSELI------H 93 L+ SD+ +A+ K+ + ++ +++ S +Q+ ++D + +L+ Sbjct: 40 LLESDVNIALVSKLRNNIRSQLLSENRSEKSTTNAQTKKLIQKTVFDELCKLVTCEGSEE 99 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 K +P + N +I+ VG+ G GKTT KL+ S G KV L DTFR+ Sbjct: 100 KAFVPKKRKTN--------IIMFVGLQGSGKTTSCTKLAVYYSKRGFKVGLVCADTFRAG 151 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A DQLK A R F S +D A +A E + + +K D++I+DT+GR H L Sbjct: 152 AFDQLKQNAIRARIPFYGSYTETDPAKVAEEGINKFKKEKFDIIIVDTSGRHHQEEELFQ 211 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + ++ V+K P+ + VLDA+ GQ A +Q + F + +I+TKMDG ARGG Sbjct: 212 EMIEISNVIK------PNQTIMVLDASIGQAAEQQSKAFKESSDFGAIILTKMDGHARGG 265 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G I V P+ F+G GE I+DLE F K F + + G D Sbjct: 266 GAISAVAATNTPIIFIGTGEHIHDLEKFSPKSFISKLLGIGD 307 >gi|6325345|ref|NP_015413.1| Srp54p [Saccharomyces cerevisiae S288c] gi|1711516|sp|P20424|SRP54_YEAST RecName: Full=Signal recognition particle subunit SRP54; AltName: Full=Signal recognition particle 54 kDa protein homolog gi|4542|emb|CAA35952.1| signal recognition particle [Saccharomyces cerevisiae] gi|172705|gb|AAA35092.1| signal recognition particle 54 kDa subunit [Saccharomyces cerevisiae] gi|1230693|gb|AAB68136.1| Srp54p: Signal recognition particle 54 kd subunit (Swiss Prot. accession number P20424) [Saccharomyces cerevisiae] gi|151942868|gb|EDN61214.1| Signal recognition particle (SRP) subunit [Saccharomyces cerevisiae YJM789] gi|256272197|gb|EEU07192.1| Srp54p [Saccharomyces cerevisiae JAY291] gi|259150240|emb|CAY87043.1| Srp54p [Saccharomyces cerevisiae EC1118] gi|285815613|tpg|DAA11505.1| TPA: Srp54p [Saccharomyces cerevisiae S288c] gi|323331335|gb|EGA72753.1| Srp54p [Saccharomyces cerevisiae AWRI796] gi|323335166|gb|EGA76456.1| Srp54p [Saccharomyces cerevisiae Vin13] gi|323346316|gb|EGA80606.1| Srp54p [Saccharomyces cerevisiae Lalvin QA23] gi|323350224|gb|EGA84371.1| Srp54p [Saccharomyces cerevisiae VL3] gi|226740|prf||1604366B signal recognition particle 54kD protein Length = 541 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 92/282 (32%), Positives = 143/282 (50%), Gaps = 33/282 (11%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS------------VQRVLYD-VSELI------H 93 L+ SD+ +A+ K+ + ++ +++ S +Q+ ++D + +L+ Sbjct: 40 LLESDVNIALVSKLRNNIRSQLLSENRSEKSTTNAQTKKLIQKTVFDELCKLVTCEGSEE 99 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 K +P + N +I+ VG+ G GKTT KL+ S G KV L DTFR+ Sbjct: 100 KAFVPKKRKTN--------IIMFVGLQGSGKTTSCTKLAVYYSKRGFKVGLVCADTFRAG 151 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A DQLK A R F S +D A +A E + + +K D++I+DT+GR H L Sbjct: 152 AFDQLKQNAIRARIPFYGSYTETDPAKVAEEGINKFKKEKFDIIIVDTSGRHHQEEELFQ 211 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + ++ V+K P+ + VLDA+ GQ A +Q + F + +I+TKMDG ARGG Sbjct: 212 EMIEISNVIK------PNQTIMVLDASIGQAAEQQSKAFKESSDFGAIILTKMDGHARGG 265 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G I V P+ F+G GE I+DLE F K F + + G D Sbjct: 266 GAISAVAATNTPIIFIGTGEHIHDLEKFSPKSFISKLLGIGD 307 >gi|90416161|ref|ZP_01224093.1| signal recognition particle GTPase [marine gamma proteobacterium HTCC2207] gi|90331886|gb|EAS47100.1| signal recognition particle GTPase [marine gamma proteobacterium HTCC2207] Length = 474 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 96/289 (33%), Positives = 153/289 (52%), Gaps = 20/289 (6%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSE 90 +S + D +RE + L+ +D+ + V + +E++ + ++V+ Q+ L V Sbjct: 24 LSEANIQDSLRE-VRMALLEADVALPVVKDFIEQVKQRALGQEVNRSLNPGQQFLKIVQA 82 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDT 149 + K++ ++ N + P +IL+ G+ G GKTT KLS+ + + KVM+ + D Sbjct: 83 ELEKVMGEQNESLNL-AAQPPAIILMAGLQGAGKTTSAAKLSRYLGEREKKKVMVVSADV 141 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI+QLK A A+F S+I A+ A A+ K VDVLI+DTAGRL + Sbjct: 142 YRPAAIEQLKTLAGEVGAEFFPSDISQKPVAIVNAAIDSAKKKFVDVLIVDTAGRLAVDD 201 Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 +MA I ++ HA P L V+DA GQ+A+ + F+ TG+I+TK+ Sbjct: 202 EMMAEIKQI---------HAAANPIETLFVIDAMIGQDAVNTAKAFNDALPLTGVILTKV 252 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG ARGG + + P+ FLGVGE + LEPF + ++ I G D Sbjct: 253 DGDARGGAALSVRQITGKPIKFLGVGEKTDALEPFHPERIASRILGMGD 301 >gi|89256557|ref|YP_513919.1| signal recognition particle protein, Ffh [Francisella tularensis subsp. holarctica LVS] gi|115314989|ref|YP_763712.1| type II general secretory pathway signal recognition particle protein Ffh [Francisella tularensis subsp. holarctica OSU18] gi|156502677|ref|YP_001428742.1| signal recognition particle protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010983|ref|ZP_02275914.1| signal recognition particle protein [Francisella tularensis subsp. holarctica FSC200] gi|254369456|ref|ZP_04985468.1| signal recognition particle protein [Francisella tularensis subsp. holarctica FSC022] gi|290953088|ref|ZP_06557709.1| signal recognition particle protein [Francisella tularensis subsp. holarctica URFT1] gi|295313694|ref|ZP_06804276.1| signal recognition particle protein [Francisella tularensis subsp. holarctica URFT1] gi|89144388|emb|CAJ79678.1| signal recognition particle protein, Ffh [Francisella tularensis subsp. holarctica LVS] gi|115129888|gb|ABI83075.1| Sec family Type II general secretory pathway signal recognition particle protein Ffh [Francisella tularensis subsp. holarctica OSU18] gi|156253280|gb|ABU61786.1| signal recognition particle protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122406|gb|EDO66546.1| signal recognition particle protein [Francisella tularensis subsp. holarctica FSC022] Length = 458 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 100/305 (32%), Positives = 154/305 (50%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ I L ++ ++ L D+ L+ +D+ + V +K + + K Sbjct: 2 FTSLSEKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIANIKEKAIG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V Q + V + I K L + P N + P VIL+ G+ G GKTT KL Sbjct: 62 EEVKKSLTPDQTFISFVKKEIEKALGEEAVPINLK-TQPPAVILMAGLQGAGKTTSTAKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KVM+ + D +R AAIDQL+ + + +F S+ + A K A+ Sbjct: 121 AKYLKEQHKKKVMVVSADVYRPAAIDQLRTLVNSLNVEFFESDASQQPEDIVTAAIKTAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K +DVLIIDTAGRLH ++ +M I ++ ++ K P +D+ TGQ+A + Sbjct: 181 TKLIDVLIIDTAGRLHIDNDMMDEIKQIHKIAK------PIETFFTVDSMTGQDAAVTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGVGEKTDALEPFHPDRVASKI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|296105951|ref|YP_003617651.1| signal recognition particle, subunit SRP54 [Legionella pneumophila 2300/99 Alcoy] gi|295647852|gb|ADG23699.1| signal recognition particle, subunit SRP54 [Legionella pneumophila 2300/99 Alcoy] Length = 458 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 93/290 (32%), Positives = 155/290 (53%), Gaps = 24/290 (8%) Query: 39 RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87 R +D ++ L ++ LI +D+ + V ++ +E++ K ++V + ++++D Sbjct: 21 RLTEDNIQHALREVRLSLIEADVALPVIKEFIEQVKQKSLGQEVLTSLNPDQAFIKIVHD 80 Query: 88 VSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLA 145 ELIH M + D+ + P V L+ G+ G GKTT KL++ + + K+M+A Sbjct: 81 --ELIHVMG---DERVELDYKTQPPAVFLMAGLQGSGKTTSTAKLARYLKETENKKIMMA 135 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 + D +R AAI QLK+ A++ F S+ +A +A + A+ + VDVLI+DTAGRL Sbjct: 136 SVDVYRPAAIHQLKVLAEQIDVAFFDSDPNEQPIKIAQKALESARKQYVDVLILDTAGRL 195 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 H + +M+ I + + + P L V+D+ TGQ+A + FH TG+I+TK Sbjct: 196 HVDEDMMSEIKSLHKAVN------PIETLFVVDSMTGQDAANTAKAFHEALPLTGVILTK 249 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG ARGG + + P+ F+G GE I LEPF + ++ I G D Sbjct: 250 TDGDARGGAALSVKQITGKPIKFIGSGEKIEALEPFHPERIASRILGMGD 299 >gi|290967715|ref|ZP_06559270.1| signal recognition particle protein [Megasphaera genomosp. type_1 str. 28L] gi|290782231|gb|EFD94804.1| signal recognition particle protein [Megasphaera genomosp. type_1 str. 28L] Length = 451 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 102/315 (32%), Positives = 159/315 (50%), Gaps = 33/315 (10%) Query: 20 GFASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75 F S S + +E + +L ++ VRE L+++ L+ +D+ VA+ ++ + K Sbjct: 2 AFESLSERFQEAFKKLRGKGKLNEEDVREALKEIRRALLEADVNFTVAKDFIKRVQEKAV 61 Query: 76 AKDV--------SVQRVLYD-VSELI---HKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 ++V +V +++ D ++EL+ L SKP P V+++ G+ G G Sbjct: 62 GEEVFGSLNASQTVIKIVRDELTELLGGTQSRLTVSSKP--------PTVLMLAGLQGAG 113 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT KL+K + G +L A D +R AAI QL+I + + E D + Sbjct: 114 KTTTAAKLAKHLKQKGKNPLLVAADVYRPAAITQLEILGNELNIPVYKEENCQDPVGIVS 173 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 A A A D +IIDTAGRLH N +LM ++I + + + PH +L V+DA TGQ Sbjct: 174 RAVPYATAHLCDTVIIDTAGRLHINEVLM---DELIHIKETVH---PHEILLVVDAMTGQ 227 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 +A+ F A G GLIMTK+DG ARGG + I P+ F+GV E + LE F Sbjct: 228 DAVTAASAFDAALGIDGLIMTKLDGDARGGAALSIKAVTGKPIKFIGVSEKTDGLEEFHP 287 Query: 304 KDFSAVITGCLDYGE 318 +++ I LD G+ Sbjct: 288 HRYASRI---LDLGD 299 >gi|16272080|ref|NP_438280.1| Signal recognition particle protein [Haemophilus influenzae Rd KW20] gi|260580590|ref|ZP_05848417.1| signal recognition particle protein [Haemophilus influenzae RdAW] gi|1174434|sp|P44518|SRP54_HAEIN RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog gi|1573059|gb|AAC21784.1| signal recognition particle protein (ffh) [Haemophilus influenzae Rd KW20] gi|260092652|gb|EEW76588.1| signal recognition particle protein [Haemophilus influenzae RdAW] Length = 462 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 101/305 (33%), Positives = 158/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72 F + S +L + + +I RL +D ++E L ++ L+ +D+ + V + K+ E L Sbjct: 2 FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61 Query: 73 KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K ++ Q L V + K + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KV++ + D +R AAI QL+ A DF S++ + +A A A+ Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVLI+DTAGRLH ++ +M I ++ L P L +DA TGQ+A + Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|282856889|ref|ZP_06266145.1| signal recognition particle protein [Pyramidobacter piscolens W5455] gi|282585246|gb|EFB90558.1| signal recognition particle protein [Pyramidobacter piscolens W5455] Length = 436 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 165/303 (54%), Gaps = 24/303 (7%) Query: 28 LKEGITDIISSRR-----LDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV 79 LKE + I S R ++ V++ L ++ L+ +D+ V + +VE++ + DV Sbjct: 5 LKERLERIFSGLRGRGKLTEEDVQQALREVRRALLEADVNYKVVKDLVEKIRVRAVGADV 64 Query: 80 -----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSK 133 Q+V V E I +++ S+ D S +P ++++VG+ G GKTT KL+K Sbjct: 65 LGSIMPAQQVSAVVYEEIARIMGEGSR--GIDISPQPPTLVMMVGLQGGGKTTSSAKLAK 122 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALAYEAFKQAQAK 192 K+S + K ML A D R AA+DQL++ A + F E G SD AL+ A A + Sbjct: 123 KLSKSH-KPMLVACDLRRPAAVDQLRVLAGQAGVAFFGPEAGESDVVALSQRALAYAASH 181 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 +DVLI DTAGRL + +MA + +M L APH +L V+DA +GQ AL E F Sbjct: 182 LIDVLIFDTAGRLAVDEEMMAELDRMKAAL------APHEILLVVDAMSGQEALNVAEAF 235 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + G TG++++K+DG ARGG + ++ +PV F GVGEG++ +E F + + I G Sbjct: 236 NNRLGVTGVVLSKLDGDARGGAALAVLAATGVPVKFAGVGEGLDAIEQFDPRRMAERIMG 295 Query: 313 CLD 315 D Sbjct: 296 MGD 298 >gi|289522289|ref|ZP_06439143.1| signal recognition particle protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504125|gb|EFD25289.1| signal recognition particle protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 445 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 103/304 (33%), Positives = 158/304 (51%), Gaps = 25/304 (8%) Query: 28 LKEGITDIISSRR---------LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78 LKE + I S R ++D +RE + L+ +D+ +A+ +VE + + ++ Sbjct: 5 LKERLEGIFSKLRGKGRLTEEDINDALRE-VRRALLEADVNYKIAKDLVERIKERCLGQE 63 Query: 79 V-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 V Q+V V E + ++ + N+ P V ++VG+ G GKTT KL+ Sbjct: 64 VLSSITPAQQVYAVVYEELCNLMGGKKERLNF-APKPPSVFMLVGLQGSGKTTTAVKLAL 122 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGS-DAAALAYEAFKQAQA 191 K+SD+ K M+ A D R AA+ QLK+ AD+ F E GS + + +A A A Sbjct: 123 KISDSH-KPMVVACDLRRPAAVKQLKVLADKARIPFFGPEEAGSGNVMDVTRKALSYADA 181 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +DV+I DTAGRLH + LMA + +M ++L P VL V+D+ TGQ + E Sbjct: 182 HLIDVIIFDTAGRLHIDDDLMAELEQMHKLLD------PSEVLLVIDSMTGQEGVNVAEA 235 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F AG TG+++TK+DG ARGG + + +P+ +GVGE + DLE F A + I Sbjct: 236 FKEKAGITGVVLTKLDGDARGGAALAVKAATGVPIKLVGVGEHLEDLEEFDATRMAQRIL 295 Query: 312 GCLD 315 G D Sbjct: 296 GMGD 299 >gi|150400248|ref|YP_001324015.1| signal recognition particle-docking protein FtsY [Methanococcus vannielii SB] gi|150012951|gb|ABR55403.1| signal recognition particle-docking protein FtsY [Methanococcus vannielii SB] Length = 400 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 141/256 (55%), Gaps = 16/256 (6%) Query: 56 SDIGVAVAQKIVEELL---------TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 +D+ V +KI+E L +K ++++ + + + E++ + + + K + Sbjct: 128 ADVAYEVVEKIIESLKNQLVGIKISSKDNPEEITFKALKKSIKEILSQDKIDVFKIIDEK 187 Query: 107 FSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + + P V+L VG+NG GKTT I KL + + G ++AAGDTFR+ AI+QL T Sbjct: 188 KAKKEPAVLLFVGINGTGKTTSISKLGYILKEKGYSAVMAAGDTFRAGAIEQLDEHGKNT 247 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + G+D+AA+ Y+A + A+A+ ++V++ DTAGR N LM I K++RV K Sbjct: 248 GIRVIKHQKGADSAAVIYDAIEHAKARGINVVLADTAGRQTTNINLMDEIKKVVRVTK-- 305 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P V+ V D+ G +A+ Q F+ G I+TK D A+GG + I + K P Sbjct: 306 ----PDLVIFVGDSLAGNDAISQAMEFNDAVNINGAILTKTDADAKGGAALSIAYSIKKP 361 Query: 286 VYFLGVGEGINDLEPF 301 + F+GVG+ +DL+ F Sbjct: 362 ILFMGVGQKYSDLQKF 377 >gi|188996577|ref|YP_001930828.1| signal recognition particle protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931644|gb|ACD66274.1| signal recognition particle protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 444 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 105/309 (33%), Positives = 160/309 (51%), Gaps = 24/309 (7%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA--------QKIVE 68 LT+ F+S KL+ G+ I + LD+ +++ + L+ +D+ V V QK++ Sbjct: 5 LTEKFSSVVEKLR-GVKKI-DEKTLDEALKD-IRTALLEADVNVNVVKEFISDIKQKVLG 61 Query: 69 ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + L K + +V +++YD E I K+L P + P +I++VG+ G GKTT Sbjct: 62 QELIKGLSAGETVIKLIYD--ETI-KILGGEESPTLAKPDNPPAIIMLVGLQGTGKTTTA 118 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC--SEIGSDAAALAYEAF 186 GKL+K + G +V +A+ D R AA QL A S D C E DA L + Sbjct: 119 GKLAKYLKSKGYRVGVASTDVRRPAAAKQLCTLAQ--SIDIPCFVDEEEKDALKLTEKVI 176 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+ + +I+DTAGRLH + LM + K+ +K P VL V DA GQ+A+ Sbjct: 177 QDAKKQGFSYIILDTAGRLHIDQELMEELKKIKEKVK------PAEVLYVADAMQGQDAI 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 E FH G TG+I+TK+DG A+GG + + +P+ F+G GE I +LEPF Sbjct: 231 TTAEEFHKAVGLTGVILTKLDGDAKGGIALSVRKVLGVPIKFIGTGEKIENLEPFYPDRI 290 Query: 307 SAVITGCLD 315 + I G D Sbjct: 291 AQRILGLGD 299 >gi|254362712|ref|ZP_04978796.1| signal recognition particle protein [Mannheimia haemolytica PHL213] gi|153094337|gb|EDN75192.1| signal recognition particle protein [Mannheimia haemolytica PHL213] Length = 463 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 101/306 (33%), Positives = 157/306 (51%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + +I RL +D +++ L ++ L+ +D+ + V + + ++ K A Sbjct: 2 FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFINKV--KERA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPF---NWDFS---HRPHVILVVGVNGVGKTTVIGK 130 V V + L E + + L N + + P VIL+ G+ G GKTT +GK Sbjct: 60 LGVEVNKSLTPGQEFLKIVQSELETAMGEANEELNLAAQPPAVILMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L+K + + KV++ + D +R AAI QL+ A+ DF +E A+A A K A Sbjct: 120 LAKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVAIAEAALKHA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DVLI+DTAGRLH + +M I ++ VL P L +DA TGQ+A Sbjct: 180 KLNFFDVLIVDTAGRLHVDGEMMEEIQQIHAVLN------PIETLFTVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF ++ Sbjct: 234 KAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|145639610|ref|ZP_01795214.1| Signal recognition particle protein [Haemophilus influenzae PittII] gi|145271401|gb|EDK11314.1| Signal recognition particle protein [Haemophilus influenzae PittII] gi|309750474|gb|ADO80458.1| 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA [Haemophilus influenzae R2866] Length = 462 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 101/305 (33%), Positives = 158/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72 F + S +L + + +I RL +D ++E L ++ L+ +D+ + V + K+ E L Sbjct: 2 FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61 Query: 73 KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K ++ Q L V + K + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KV++ + D +R AAI QL+ A DF S++ + +A A A+ Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVLI+DTAGRLH ++ +M I ++ L P L +DA TGQ+A + Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|331698517|ref|YP_004334756.1| signal recognition particle-docking protein FtsY [Pseudonocardia dioxanivorans CB1190] gi|326953206|gb|AEA26903.1| signal recognition particle-docking protein FtsY [Pseudonocardia dioxanivorans CB1190] Length = 607 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 108/269 (40%), Positives = 159/269 (59%), Gaps = 17/269 (6%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKP 102 E++E L+++D+G + ++VE L T+ ++ V +R+L DV + + L P Sbjct: 341 EDVEATLLQADLGPEMTAELVEILRTEIASRGVRTPDQARRLLRDV---LGQALEPGLDR 397 Query: 103 FNWDFSH--RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 H RP V+LVVGVNG GKTT GKL++ + G V+L A DTFR+AA +QL Sbjct: 398 SVAALPHDGRPAVLLVVGVNGTGKTTTTGKLARVLVADGRHVVLGAADTFRAAAAEQLAT 457 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 W +R A V G D A++A++A K+ A D +++DTAGRLH + LM +GK+ R Sbjct: 458 WGERAGAAVVRGPEGGDPASVAFDAVKRGTADGADAVLLDTAGRLHTKTGLMDELGKVKR 517 Query: 221 VLKR---LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 V+++ +D VL VLDATTGQN L Q +F V TG+++TK+DGTA+GG + Sbjct: 518 VVEKQAEVD-----EVLLVLDATTGQNGLTQARVFGDVVKVTGIVLTKLDGTAKGGIVFR 572 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + +PV +G+GEG +DL PF F Sbjct: 573 VQRELGVPVKLVGLGEGPDDLAPFEPAAF 601 >gi|260581975|ref|ZP_05849770.1| signal recognition particle protein [Haemophilus influenzae NT127] gi|260094865|gb|EEW78758.1| signal recognition particle protein [Haemophilus influenzae NT127] Length = 462 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 101/305 (33%), Positives = 158/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72 F + S +L + + +I RL +D ++E L ++ L+ +D+ + V + K+ E L Sbjct: 2 FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61 Query: 73 KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K ++ Q L V + K + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KV++ + D +R AAI QL+ A DF S++ + +A A A+ Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVLI+DTAGRLH ++ +M I ++ L P L +DA TGQ+A + Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|322695331|gb|EFY87141.1| signal recognition particle 54 kDa protein [Metarhizium acridum CQMa 102] Length = 522 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 95/304 (31%), Positives = 151/304 (49%), Gaps = 28/304 (9%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-- 80 ++ +T++ + LD D + +E+ L+ +D+ V + ++ + + + KD+ Sbjct: 9 RINAAVTNLTRDQNLDEKAFDNMLKEICSALLEADVNVKLVMQLRKSIKSTVNFKDLPPA 68 Query: 81 ------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 +Q+ ++D EL+ +++ P ++PF +P+VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--ELV-QLVDPHAEPFKPK-KGKPNVIMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G + L DTFR+ A DQLK A + + S +D AA+A Q + +K Sbjct: 125 YQTRGFRACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAAVARAGVDQFKKEKF 184 Query: 195 DVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 DV+I+DT+GR S L M I IR P + VLDA+ GQ A Q + Sbjct: 185 DVIIVDTSGRHRQESALFQEMIDIQTAIR---------PDETIMVLDASIGQQAESQAKA 235 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F A +I+TK DG A GGG I V P+ F+G GE + DLE F + F + Sbjct: 236 FKEAADFGAIIITKTDGHAHGGGAISAVAATHTPIVFIGTGEHMLDLERFAPQQFVQKLL 295 Query: 312 GCLD 315 G D Sbjct: 296 GMGD 299 >gi|147920512|ref|YP_685694.1| putative signal recognition particle [uncultured methanogenic archaeon RC-I] gi|110621090|emb|CAJ36368.1| putative signal recognition particle [uncultured methanogenic archaeon RC-I] Length = 377 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 108/299 (36%), Positives = 167/299 (55%), Gaps = 27/299 (9%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 K G + ++ L +G +++ S + +G ELE L+ SD+ + VA+ I+ KR Sbjct: 81 KPAGGILNKAIALTKG--EVVLSEKDLEGPLWELEMALLESDVALPVAESII-----KRV 133 Query: 76 AKDVSVQ-----RVLYDVSE-----LIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGV 122 +D++ Q R D++E I +L + F+ DF S+RP VI +GVNG Sbjct: 134 KEDLTGQHKKFLRSTGDLAEDALRDSIASILNTNALDFD-DFVRKSNRPVVITFIGVNGA 192 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT I KL +++ + G V++AAGDTFR+ AI+QL+ ADR + G+D AA+ Sbjct: 193 GKTTTIAKLGERLKEQGYGVVIAAGDTFRAGAIEQLEKHADRLGIKMIKHAQGADPAAVI 252 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+ K D+++ DTAGRLH N LM + K+ RV+K P V+ V +A G Sbjct: 253 YDAVQFAKNNKKDIVLADTAGRLHTNINLMEQLRKINRVVK------PDLVIFVDEAIAG 306 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +A+ + ++F+ +G I+TK D A+GG I I P+ FLGVG+ DL+ F Sbjct: 307 NDAVERAKLFNDAVPVSGTILTKADADAKGGAAISIAHITGKPILFLGVGQEYKDLKKF 365 >gi|15603048|ref|NP_246120.1| hypothetical protein PM1183 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721534|gb|AAK03267.1| Ffh [Pasteurella multocida subsp. multocida str. Pm70] Length = 458 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 100/306 (32%), Positives = 158/306 (51%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + +I RL +D ++E L ++ L+ +D+ + V + + ++ K A Sbjct: 2 FENLSDRLSKTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFINKV--KERA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPF---NWDF---SHRPHVILVVGVNGVGKTTVIGK 130 V V + L E + + L N + P VIL+ G+ G GKTT +GK Sbjct: 60 IGVEVNKSLTPGQEFVKIVQAELEAAMGEANESLHLSTQPPAVILMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L+K + + KV++ + D +R AAI QL+ A ADF S++ + +A A +A Sbjct: 120 LAKFLKERHKKKVLVVSADVYRPAAIKQLETLAQAVGADFFPSDVSQNPVQIAQAALSEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVLI+DTAGRLH + +M I ++ L P L +DA TGQ+A Sbjct: 180 KLKFYDVLIVDTAGRLHVDGEMMDEIKQIHAALN------PIETLFTVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+++TK+DG ARGG + I P+ FLGVGE + LEPF + ++ Sbjct: 234 KSFNEALPLTGVVLTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPERVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|145629006|ref|ZP_01784805.1| signal recognition particle protein [Haemophilus influenzae 22.1-21] gi|144978509|gb|EDJ88232.1| signal recognition particle protein [Haemophilus influenzae 22.1-21] Length = 346 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 101/305 (33%), Positives = 158/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72 F + S +L + + +I RL +D ++E L ++ L+ +D+ + V + K+ E L Sbjct: 2 FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61 Query: 73 KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K ++ Q L V + K + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KV++ + D +R AAI QL+ A DF S++ + +A A A+ Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVLI+DTAGRLH ++ +M I ++ L P L +DA TGQ+A + Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|303249995|ref|ZP_07336197.1| signal recognition particle protein (sigma-54 like protein) [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253425|ref|ZP_07535296.1| Signal recognition particle protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651058|gb|EFL81212.1| signal recognition particle protein (sigma-54 like protein) [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859104|gb|EFM91146.1| Signal recognition particle protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 463 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 98/305 (32%), Positives = 158/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + +I RL +D +++ L ++ L+ +D+ + V ++ + ++ + Sbjct: 2 FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERALG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q L V + + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 TEVNKSLTPGQEFLKIVQSELEIAMGEANEELNL-ATQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KV++ + D +R AAI QL+ A+ DF +E +A A K A+ Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETTQKPVEIAELALKHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DVLI+DTAGRLH + +M I ++ RVL P L +DA TGQ+A + Sbjct: 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHRVLN------PIETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|158430970|pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex Of M. Jannaschii gi|158430971|pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex Of M. Jannaschii Length = 432 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 97/290 (33%), Positives = 154/290 (53%), Gaps = 28/290 (9%) Query: 39 RRLDDGVREELEDLLIRSDIGV--------AVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90 ++L V ++++ LI++D+ V + ++ +EE K +K + +++Y+ E Sbjct: 23 KKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYE--E 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 L+ K+L +K + + +VIL+VG+ G GKTT KL++ + GLK L A DT+ Sbjct: 81 LV-KLLGEEAKKLELN-PKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGS----DAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 R AA +QLK A++ E + D E FK+A DVLIIDTAGR Sbjct: 139 RPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKKA-----DVLIIDTAGRHK 193 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG-LIMTK 265 L+ + ++ + P ++ V+D T GQ A Q + F G G +I+TK Sbjct: 194 EEKGLLEEMKQIKEITN------PDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTK 247 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +DG+A+GGG + V K P+ F+G+GEGI+DLEPF K F + + G D Sbjct: 248 LDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGD 297 >gi|20095049|ref|NP_614896.1| Signal recognition particle GTPase [Methanopyrus kandleri AV19] gi|19888325|gb|AAM02826.1| Signal recognition particle GTPase [Methanopyrus kandleri AV19] Length = 349 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 106/287 (36%), Positives = 157/287 (54%), Gaps = 27/287 (9%) Query: 47 EELEDLLIRSDIGVAVAQKIVEEL----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102 +ELE LI +D+ V VA+ I EEL + +R + +V V E + L+ + +P Sbjct: 75 DELELELISNDVAVEVAESIREELKKELVGRRVKGKSEIPKV---VEEGFREALLSVLEP 131 Query: 103 FNW-DFSH---------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 D RP +I+ VGVNG GKTT I K++K + D G V++AA DTFR+ Sbjct: 132 KKEVDLMETVEKARQDGRPAIIMFVGVNGSGKTTTIAKVAKLLKDHGYSVVIAAADTFRA 191 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL+ A+R + E G D A+A+ A + A+AK DV+++DTAGR + + LM Sbjct: 192 AAIEQLEEHAERLGVTLIKGERGDDPTAVAFNAVQHAEAKGKDVVLVDTAGRAYTDVNLM 251 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + KM RVL+ P V+ V DA G +A+ Q + FH G I+TK+D A+G Sbjct: 252 EELKKMKRVLE------PDLVVFVGDALAGNDAIEQAKTFHEYVGIDCAILTKVDADAKG 305 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEE 319 G ++ I P+ +LGVG+ +DL+ F + F + G GEE Sbjct: 306 GAVLSISKVTGAPILYLGVGQDYDDLKAFSPEWFVERVIG----GEE 348 >gi|323714481|pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal Recognition Particle Length = 454 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 97/290 (33%), Positives = 154/290 (53%), Gaps = 28/290 (9%) Query: 39 RRLDDGVREELEDLLIRSDIGV--------AVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90 ++L V ++++ LI++D+ V + ++ +EE K +K + +++Y+ E Sbjct: 23 KKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYE--E 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 L+ K+L +K + + +VIL+VG+ G GKTT KL++ + GLK L A DT+ Sbjct: 81 LV-KLLGEEAKKLELN-PKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGS----DAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 R AA +QLK A++ E + D E FK+A DVLIIDTAGR Sbjct: 139 RPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKKA-----DVLIIDTAGRHK 193 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG-LIMTK 265 L+ + ++ + P ++ V+D T GQ A Q + F G G +I+TK Sbjct: 194 EEKGLLEEMKQIKEITN------PDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTK 247 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +DG+A+GGG + V K P+ F+G+GEGI+DLEPF K F + + G D Sbjct: 248 LDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGD 297 >gi|242084798|ref|XP_002442824.1| hypothetical protein SORBIDRAFT_08g003410 [Sorghum bicolor] gi|241943517|gb|EES16662.1| hypothetical protein SORBIDRAFT_08g003410 [Sorghum bicolor] Length = 559 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 101/309 (32%), Positives = 157/309 (50%), Gaps = 23/309 (7%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +LT G S KL+ G+ DI++ + + +R+ + L+ +D+ + V ++ +E + K Sbjct: 81 QLTTGLESAWNKLR-GV-DILTKENIAEPMRD-IRRALLEADVSLPVVRRFIESVSEKAV 137 Query: 76 AKDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126 DV + +V+ D EL+ M +S + F+ P +IL+ G+ GVGKTT Sbjct: 138 GTDVIRGVRPDQQLVKVVND--ELVQLMGGEVS---DLVFAKSGPTIILLAGLQGVGKTT 192 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 V KL+ + G ML A D +R AAIDQL I + + + +A Sbjct: 193 VCAKLAFYLKKMGKSCMLVAADVYRPAAIDQLTILGKKVGVPVYSEGTEAKPSQIAKNGL 252 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 K+A+ K DV+I+DTAGRL + +M + ++ + + P VL V+DA TGQ A Sbjct: 253 KEAKVNKADVIIVDTAGRLQVDKSMMNELKEVKKAVN------PTEVLLVVDAMTGQEAA 306 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 V F+ G TG I+TK+DG +RGG + + P+ F+G GE I DLEPF Sbjct: 307 GLVSSFNDEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKFVGQGERIEDLEPFYPDRM 366 Query: 307 SAVITGCLD 315 + I G D Sbjct: 367 AQRILGMGD 375 >gi|119871975|ref|YP_929982.1| signal recognition particle-docking protein FtsY [Pyrobaculum islandicum DSM 4184] gi|119673383|gb|ABL87639.1| signal recognition particle-docking protein FtsY [Pyrobaculum islandicum DSM 4184] Length = 307 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 73/197 (37%), Positives = 111/197 (56%), Gaps = 6/197 (3%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 RP V++ +G NG GKTT + KL+ + + G +V+ AA DTFR+ A +QL+ R Sbjct: 109 RPFVVMFLGPNGYGKTTTLAKLAFHLQEMGFRVVAAAADTFRAGAREQLEEHGRRVGFRV 168 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V GSD AA+AY+A + A+++ ++IDTAGR+H ++ LM + K+ RV + Sbjct: 169 VGGAYGSDPAAVAYDAIQHAKSRGYHFVLIDTAGRMHTDTNLMDELRKIQRVAE------ 222 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH + V DA G AL + + G+I TK+D +GG ++ + K PVYFL Sbjct: 223 PHRSIFVFDAQLGNEALEIAKYYSKYVNIDGMIATKVDAYPKGGSILTFIYVLKRPVYFL 282 Query: 290 GVGEGINDLEPFVAKDF 306 GVG+ DL F ++ Sbjct: 283 GVGQTYRDLVKFSKAEY 299 >gi|170718344|ref|YP_001783571.1| signal recognition particle protein [Haemophilus somnus 2336] gi|168826473|gb|ACA31844.1| signal recognition particle protein [Haemophilus somnus 2336] Length = 458 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 97/305 (31%), Positives = 157/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + +I RL +D +++ L ++ L+ +D+ + V ++ + ++ + Sbjct: 2 FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFIHQVKERAIG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V+ Q L V + K + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 EEVNKSLTPGQEFLKIVQTELEKAMGVANEKLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + K+M+ + D +R AAI QL+ A DF S + +A A +A+ Sbjct: 121 AKFLKENYKKKIMVVSVDVYRPAAIKQLETLAQSIGVDFYPSNVSQKPVEIARTALAEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVLI+DTAGRLH + +M I ++ L P L +DA TGQ+A + Sbjct: 181 LKFYDVLIVDTAGRLHVDDTMMEEIQQIHTALN------PIETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE LEPF ++ I Sbjct: 235 AFNEALPLTGIILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|226501792|ref|NP_001142003.1| hypothetical protein LOC100274153 [Zea mays] gi|194706754|gb|ACF87461.1| unknown [Zea mays] Length = 556 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 101/307 (32%), Positives = 158/307 (51%), Gaps = 19/307 (6%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +LT G S KL+ G+ D+++ + + +R+ + L+ +D+ + V ++ +E + K Sbjct: 78 QLTTGLESAWNKLR-GV-DVLTKENIAEPMRD-IRRALLEADVSLPVVRRFIESVSEKAV 134 Query: 76 AKDV-----SVQRVLYDVS-ELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVI 128 DV Q+++ VS EL+ M +S + F+ P +IL+ G+ GVGKTTV Sbjct: 135 GTDVIRGVRPDQQLVKVVSDELVQLMGGEVS---DLVFAKSGPTIILLAGLQGVGKTTVC 191 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+ + G ML A D +R AAIDQL I + + + +A K+ Sbjct: 192 AKLAFYLKKLGKSCMLVAADVYRPAAIDQLTILGKKVGVPVYSEGTEAKPSQIAKNGLKE 251 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DV+I+DTAGRL + +M + ++ + + P VL V+DA TGQ A Sbjct: 252 AKVNKADVIIVDTAGRLQVDKAMMNELKEVKKAVN------PTEVLLVVDAMTGQEAAGL 305 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 V F+ G TG I+TK+DG +RGG + + P+ F+G GE I DLEPF + Sbjct: 306 VSSFNDEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKFVGQGERIEDLEPFYPDRMAQ 365 Query: 309 VITGCLD 315 I G D Sbjct: 366 RILGMGD 372 >gi|15606801|ref|NP_214181.1| signal recognition particle receptor protein [Aquifex aeolicus VF5] gi|6226155|sp|O67615|SRP54_AQUAE RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog gi|2984037|gb|AAC07579.1| signal recognition particle receptor protein [Aquifex aeolicus VF5] Length = 454 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 79/202 (39%), Positives = 113/202 (55%), Gaps = 6/202 (2%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 +L VG+ G GKTT IGK++ + G KV +++ D R AA+ QL+ A+R + E Sbjct: 98 VLFVGLQGTGKTTTIGKIANLLKKGGHKVAVSSTDLRRPAAMLQLQRLAERVGVPYYEFE 157 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 G A +A A K+A+ + VD L++DTAGRLH + LM + ++ V P + Sbjct: 158 EGLGAVEIARRAVKRAKEESVDYLLLDTAGRLHVDEELMKELQEIKEVTN------PSEI 211 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L V DA GQ AL + FH G TG+++TKMDG ARGG + + +P+ F+GVGE Sbjct: 212 LYVADAMQGQTALETAKTFHERLGLTGVVITKMDGDARGGLALSVKEVLGVPIKFIGVGE 271 Query: 294 GINDLEPFVAKDFSAVITGCLD 315 I D+EPF + I G D Sbjct: 272 KIEDIEPFYPDRIAQRILGLGD 293 >gi|224584530|ref|YP_002638328.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469057|gb|ACN46887.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 453 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 101/306 (33%), Positives = 162/306 (52%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V+E L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +V+ Q + V SEL+ M ++ N + P V+L+ G+ G GKTT +GK Sbjct: 62 HEVNKSLTPGQEFVKIVRSELVAAM-GEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVL++DTAGRLH + +M I ++ +K P L V+DA TGQ+A Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+++TK+DG ARGG + I P+ FLGVGE N LEPF ++ Sbjct: 234 KAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTNALEPFHPDRIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|219669778|ref|YP_002460213.1| signal recognition particle protein [Desulfitobacterium hafniense DCB-2] gi|219540038|gb|ACL21777.1| signal recognition particle protein [Desulfitobacterium hafniense DCB-2] Length = 453 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 97/304 (31%), Positives = 159/304 (52%), Gaps = 17/304 (5%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S KL+E + S +L + V E + ++ L+ +D+ V + V ++ + Sbjct: 2 FQGLSEKLQETFKRLKSKGKLTEADVNEAMREVRMALLEADVNFKVVKDFVAKVKERSIG 61 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V Q+V+ V+E + ++ +S N S P VI++VG+ G GKTT KL Sbjct: 62 QEVLESLSPGQQVIKIVNEEMVALMGGVSSKINIS-SKPPTVIMLVGLQGAGKTTHGAKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + G +L A D +R AAI QL++ ++ V S + +A + + A + Sbjct: 121 ANMLKKQGKHPLLVACDIYRPAAIKQLEVLGEQIKVP-VFSLGQENPVKIAAASLQHANS 179 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DV+IIDTAGRLH N LM + ++ +K PH +L V+DA TGQ+A+ E Sbjct: 180 QGLDVVIIDTAGRLHINEELMGELREIKTAVK------PHEILLVVDAMTGQDAVNVAES 233 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 FH G G+I+TK+DG RGG + + P+ F GVGE ++ +EPF + ++ I Sbjct: 234 FHNELGVDGIILTKLDGDTRGGAALSVKAVTGCPIKFAGVGEKMDAIEPFFPERMASRIL 293 Query: 312 GCLD 315 G D Sbjct: 294 GMGD 297 >gi|255658401|ref|ZP_05403810.1| signal recognition particle protein [Mitsuokella multacida DSM 20544] gi|260849734|gb|EEX69741.1| signal recognition particle protein [Mitsuokella multacida DSM 20544] Length = 457 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 87/282 (30%), Positives = 146/282 (51%), Gaps = 15/282 (5%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93 +D V E + ++ L+ +D+ V ++ ++ + + +D+ Q V+ V E + Sbjct: 25 EDDVNEAMREVRMALLEADVNFKVVKQFIKTVKERAIGQDILETLTPAQVVIKIVDEELT 84 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 K++ N P +I++VG+ G GKTT GKL + G + +L A D +R A Sbjct: 85 KLMGDTQSRINMS-PKPPTIIMMVGLQGAGKTTSAGKLGLALKKQGKRPLLVAADIYRPA 143 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 AI QL++ + E G+DA +A + +Q+ DV+IIDTAGRL + LM Sbjct: 144 AITQLQVLGKQLDIPVFSMEQGTDAVTIAKNSIDYSQSHACDVVIIDTAGRLQIDEKLMK 203 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + + + + H PH +L V+DA TGQ ++ + F+ G G++MTK+DG ARGG Sbjct: 204 ELCDI-----KSEVH-PHEILLVVDAMTGQESVNVAQSFNDALGLDGVVMTKLDGDARGG 257 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + +P+ F+G+GE + LEPF ++ I G D Sbjct: 258 AALSVKAVTGVPIKFIGLGEKLEPLEPFHPDRMASRILGMGD 299 >gi|57641421|ref|YP_183899.1| signal recognition particle protein Srp54 [Thermococcus kodakarensis KOD1] gi|73919452|sp|Q5JJC8|SRP54_PYRKO RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|57159745|dbj|BAD85675.1| signal recognition particle, SRP54 subunit [Thermococcus kodakarensis KOD1] Length = 448 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 94/320 (29%), Positives = 155/320 (48%), Gaps = 27/320 (8%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 M+ +K+ S ++KL + +KE + DI + L+++D+ V Sbjct: 1 MALEKLGQALNSALKKLARSSTVDEATIKEIVRDI--------------QRALLQADVNV 46 Query: 61 AVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115 + ++ +++ + ++ + ++ V E + K L +KP + H+P VIL Sbjct: 47 KLVLQLTKQIQKRALEEEPPAGVSKKEHIIKIVYEELTKFLGTEAKPL--EIKHKPTVIL 104 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VG+ G GKTT + KL++ + G KV + DT+R A QL+ D + Sbjct: 105 TVGIQGSGKTTSVAKLARYLQKRGYKVGVVCSDTWRPGAYYQLRQLLDPFGIEVFGDPEE 164 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 DA LA E + + K VDV+I+D+AGR L+ + ++ +K PH V+ Sbjct: 165 KDAVKLAREGVEHFREKGVDVIIVDSAGRHKEEKGLIEEMRQISEAIK------PHEVIL 218 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+D T GQ A Q F +I+TK+DG+A+GGG + V P+ F+G GE I Sbjct: 219 VIDGTIGQQAYNQAMAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGERI 278 Query: 296 NDLEPFVAKDFSAVITGCLD 315 +DLEPF K F + + G D Sbjct: 279 DDLEPFDPKRFVSRLLGLGD 298 >gi|15668272|ref|NP_247065.1| signal recognition particle protein Srp54 [Methanocaldococcus jannaschii DSM 2661] gi|2500886|sp|Q57565|SRP54_METJA RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|1590878|gb|AAB98081.1| signal recognition particle, subunit SRP54 [Methanocaldococcus jannaschii DSM 2661] Length = 451 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 97/290 (33%), Positives = 154/290 (53%), Gaps = 28/290 (9%) Query: 39 RRLDDGVREELEDLLIRSDIGV--------AVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90 ++L V ++++ LI++D+ V + ++ +EE K +K + +++Y+ E Sbjct: 24 KKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYE--E 81 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 L+ K+L +K + + +VIL+VG+ G GKTT KL++ + GLK L A DT+ Sbjct: 82 LV-KLLGEEAKKLELN-PKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGS----DAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 R AA +QLK A++ E + D E FK+A DVLIIDTAGR Sbjct: 140 RPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKKA-----DVLIIDTAGRHK 194 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG-LIMTK 265 L+ + ++ + P ++ V+D T GQ A Q + F G G +I+TK Sbjct: 195 EEKGLLEEMKQIKEITN------PDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTK 248 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +DG+A+GGG + V K P+ F+G+GEGI+DLEPF K F + + G D Sbjct: 249 LDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGD 298 >gi|310658884|ref|YP_003936605.1| signal recognition particle protein [Clostridium sticklandii DSM 519] gi|308825662|emb|CBH21700.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Clostridium sticklandii] Length = 448 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 82/234 (35%), Positives = 128/234 (54%), Gaps = 7/234 (2%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 Q+V+ V+E + +++ + N S P VI++VG+ G GKT+ GKL+ + G + Sbjct: 73 QQVIKIVNEELSELMGGVQSKINIS-SKPPTVIMLVGLQGAGKTSTAGKLALNLKKQGKQ 131 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 ML A D +R AAI QL+I A A F E ++ +A + +++A+ D++IIDT Sbjct: 132 PMLVACDVYRPAAIKQLEIVASGAGAIFYSEEGNTNPVEIATKGYEKAKTLGYDIVIIDT 191 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AGRLH + LM + + +K PH ++ V+D+ TGQ+A+ E F G G+ Sbjct: 192 AGRLHIDENLMDELKNIKSSIK------PHEIMLVVDSMTGQDAVNIAESFDQTLGIDGV 245 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I+TK+DG RGG + I K P+ + VGE + DLE F ++ I G D Sbjct: 246 ILTKLDGDTRGGAALSIKAITKKPIKYAAVGEKLEDLEQFYPDRMASRILGMGD 299 >gi|294815360|ref|ZP_06774003.1| Signal recognition particle [Streptomyces clavuligerus ATCC 27064] gi|326443713|ref|ZP_08218447.1| signal recognition particle-docking protein FtsY [Streptomyces clavuligerus ATCC 27064] gi|294327959|gb|EFG09602.1| Signal recognition particle [Streptomyces clavuligerus ATCC 27064] Length = 409 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 115/304 (37%), Positives = 175/304 (57%), Gaps = 13/304 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----- 70 +L A + L +G+ ++S LD+ EE+E+ L+ +D+GVA Q++VE L Sbjct: 111 RLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLTADVGVAPTQELVERLRERVK 170 Query: 71 -LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L R ++ ++ + + + D P V++VVGVNG GKTT G Sbjct: 171 VLGTRTPDELRTLLREELLTLVGTDLDRAVKTESGLDT---PGVVMVVGVNGTGKTTTTG 227 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL++ + G V+L A DTFR+AA DQL+ W +R A V G D A++A++A K+ Sbjct: 228 KLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEG 287 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQ 248 A+ DV++IDTAGRLH + LM +GK+ RV+++ H P +L VLDATTGQN L Q Sbjct: 288 IAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HGPLDEILLVLDATTGQNGLVQ 344 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 +F V TG+++TK+DGTA+GG ++ + +PV +G+GEG +DL PF + F Sbjct: 345 ARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGPDDLAPFEPEAFVD 404 Query: 309 VITG 312 + G Sbjct: 405 ALIG 408 >gi|90020849|ref|YP_526676.1| signal recognition particle subunit FFH/SRP54 (srp54) / transcription elongation factor GreB [Saccharophagus degradans 2-40] gi|89950449|gb|ABD80464.1| signal recognition particle subunit FFH/SRP54 (srp54) / transcription elongation factor GreB [Saccharophagus degradans 2-40] Length = 495 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 98/308 (31%), Positives = 157/308 (50%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRLD-DGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L I RL+ D +++ L D+ L+ +D+ + V ++ ++ + Sbjct: 28 FENLSDRLSRSFKKITGKARLNHDNIKDALSDVRKALLEADVALPVVKEFTGQVRKRAQG 87 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++VS Q+ L V + +++ ++ N + P V+L+ G+ G GKTT + KL Sbjct: 88 QEVSRALNPGQQFLKIVESELTQIMGEANEKLNL-AAQPPAVVLMAGLQGAGKTTSVAKL 146 Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 ++ + + KVM+ + D +R AAI QL+ A A+F S+ G + +A A QA+ Sbjct: 147 ARFLREREKKKVMVVSADVYRPAAIKQLETLATEVEAEFFPSDAGQNPVDIAKNALAQAK 206 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 VDVL++DTAGRLH + LM I + HA P L V+DA GQ+A+ Sbjct: 207 KLHVDVLLVDTAGRLHVDEALMEEIQAI---------HAAVNPIETLFVIDAMIGQDAVN 257 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+I+TK DG ARGG + + P+ FLGVGE LEPF + Sbjct: 258 TAKAFNDALPLTGVILTKTDGDARGGAALSVRHVTGKPIKFLGVGEKTEALEPFHPDRLA 317 Query: 308 AVITGCLD 315 + I G D Sbjct: 318 SRILGMGD 325 >gi|322712654|gb|EFZ04227.1| signal recognition particle 54 kDa protein [Metarhizium anisopliae ARSEF 23] Length = 522 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 95/304 (31%), Positives = 151/304 (49%), Gaps = 28/304 (9%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-- 80 ++ +T++ + LD D + +E+ L+ +D+ V + ++ + + + KD+ Sbjct: 9 RINAAVTNLTRDQNLDEKAFDNMLKEICAALLEADVNVKLVMQLRKSIKSTVNFKDLPPA 68 Query: 81 ------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 +Q+ ++D EL+ +++ P ++PF +P+VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--ELV-QLVDPHAEPFKPK-KGKPNVIMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G + L DTFR+ A DQLK A + + S +D AA+A Q + +K Sbjct: 125 YQTRGFRACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAAVARAGVDQFKKEKF 184 Query: 195 DVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 DV+I+DT+GR S L M I IR P + VLDA+ GQ A Q + Sbjct: 185 DVIIVDTSGRHRQESALFQEMIDIQTAIR---------PDETIMVLDASIGQQAESQAKA 235 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F A +I+TK DG A GGG I V P+ F+G GE + DLE F + F + Sbjct: 236 FKEAADFGAIIITKTDGHAHGGGAISAVAATHTPIVFIGTGEHMLDLERFAPQQFVQKLL 295 Query: 312 GCLD 315 G D Sbjct: 296 GMGD 299 >gi|284998272|ref|YP_003420040.1| signal recognition particle-docking protein FtsY [Sulfolobus islandicus L.D.8.5] gi|284446168|gb|ADB87670.1| signal recognition particle-docking protein FtsY [Sulfolobus islandicus L.D.8.5] Length = 208 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 71/199 (35%), Positives = 122/199 (61%), Gaps = 6/199 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S +P++I+ G+NGVGKTT I K + + GL +++A DTFR+AA +QL+I A Sbjct: 10 STKPYIIIFFGINGVGKTTTIAKFAYMLKKNGLSCIISASDTFRAAAQEQLEIHARNLEI 69 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + + G D A++AY+A + A+++ +DV++IDTAGR+H ++ L+ + +++ + + Sbjct: 70 PLIKGKYGGDPASVAYDAIRAAKSRGIDVVLIDTAGRMHTDTDLVNELKRVVNITR---- 125 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ + VLD+ G +AL Q + F G +I+TK+D +GG ++ + PV Sbjct: 126 --PNLKILVLDSLGGNDALEQAKYFENNVGFDLVILTKVDADVKGGVILSLAYELNKPVG 183 Query: 288 FLGVGEGINDLEPFVAKDF 306 +LGVG+ +DL PF A+ F Sbjct: 184 YLGVGQTYDDLIPFNAEWF 202 >gi|45358246|ref|NP_987803.1| signal recognition particle-docking protein FtsY [Methanococcus maripaludis S2] gi|44921003|emb|CAF30239.1| signal recognition particle receptor SRalpha [Methanococcus maripaludis S2] Length = 383 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 75/192 (39%), Positives = 113/192 (58%), Gaps = 6/192 (3%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+L VG+NG GKTT I KL+ + + G ++AAGDTFR+ AI+QL+ T Sbjct: 175 EPAVLLFVGINGTGKTTSISKLAYILKEKGYSAVMAAGDTFRAGAIEQLEEHGKNTGIKV 234 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + + G+D+AA+ Y+A A+AK ++V++ DTAGR N LM I K++RV K Sbjct: 235 IKHQKGADSAAVIYDAISHAKAKGLNVVLADTAGRQTTNINLMDEIKKVVRVTK------ 288 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P ++ V D+ G +A+ Q E F+ G I+TK D A+GG + I + P+ F+ Sbjct: 289 PDLIIFVGDSLAGNDAISQAEEFNNTININGAILTKTDADAKGGAALSIAYSIGKPILFM 348 Query: 290 GVGEGINDLEPF 301 GVG+ +DL+ F Sbjct: 349 GVGQRYSDLQEF 360 >gi|171186108|ref|YP_001795027.1| signal recognition particle-docking protein FtsY [Thermoproteus neutrophilus V24Sta] gi|170935320|gb|ACB40581.1| signal recognition particle-docking protein FtsY [Thermoproteus neutrophilus V24Sta] Length = 305 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 73/197 (37%), Positives = 111/197 (56%), Gaps = 6/197 (3%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 RP+V++ +G NG GKTT + KL+ + + G +V+ AA DTFR+ A +QL+ R Sbjct: 109 RPYVVMFLGPNGYGKTTTLAKLAFNLQEMGFRVVAAAADTFRAGAREQLEEHGRRVGFRV 168 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V GSD AA+AY+A + A+++ ++IDTAGR+H ++ LM + K+ RV + Sbjct: 169 VGGPYGSDPAAVAYDAVQHARSRGYHFVLIDTAGRMHTDANLMEELRKIQRVAE------ 222 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH + V DA G AL + G+I TK+D +GG ++ + K PVYFL Sbjct: 223 PHLSIFVFDAQLGNEALEIARYYSKYVRIDGMIATKVDAYPKGGSILTFMYVLKRPVYFL 282 Query: 290 GVGEGINDLEPFVAKDF 306 GVG+ DL F ++ Sbjct: 283 GVGQTYRDLVKFSKSEY 299 >gi|270158989|ref|ZP_06187645.1| signal recognition particle protein [Legionella longbeachae D-4968] gi|289166170|ref|YP_003456308.1| signal recognition particle protein Ffh [Legionella longbeachae NSW150] gi|269987328|gb|EEZ93583.1| signal recognition particle protein [Legionella longbeachae D-4968] gi|288859343|emb|CBJ13279.1| putative signal recognition particle protein Ffh [Legionella longbeachae NSW150] Length = 459 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/289 (31%), Positives = 159/289 (55%), Gaps = 22/289 (7%) Query: 39 RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87 R ++ V+ L ++ L+ +D+ + V ++ +E++ K ++V + ++++D Sbjct: 21 RLTEENVQHALREVRLSLLEADVALPVIKEFIEQVKQKALGQEVLTHLNPDQAFVKIVHD 80 Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAA 146 ELIH M ++ N+ + P + L+ G+ G GKTT KL++ + ++ KVM+ + Sbjct: 81 --ELIHVMGDERAE-LNFK-TQPPAIFLMAGLQGSGKTTSTAKLARYLKESENKKVMVVS 136 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 D +R AAI QLK+ A++ F +E+ +A +A A+ + +DVLIIDTAGRLH Sbjct: 137 VDVYRPAAIQQLKVLAEQIGVGFFPAEVSEQPLTIARKALDAAKKQYMDVLIIDTAGRLH 196 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 ++ +MA I ++ + + P L V+D+ TGQ+A + FH TG+I+TK Sbjct: 197 IDADMMAEIKELHQAVN------PIETLFVVDSMTGQDAANTAKAFHEALPLTGVILTKT 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG ARGG + + P+ F+G GE ++ LEPF + ++ I G D Sbjct: 251 DGDARGGAALSVKQITGQPIKFIGSGEKVDALEPFHPERVASRILGMGD 299 >gi|75910555|ref|YP_324851.1| signal recognition particle subunit FFH/SRP54 (srp54) [Anabaena variabilis ATCC 29413] gi|75704280|gb|ABA23956.1| signal recognition particle subunit FFH/SRP54 (srp54) [Anabaena variabilis ATCC 29413] Length = 490 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/295 (31%), Positives = 150/295 (50%), Gaps = 29/295 (9%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85 D IS + D +RE + L+ +D+ + V + + E+ K +V +++ Sbjct: 20 DKISESNIQDALRE-VRRALLEADVNLQVVKDFISEVEAKAQGAEVISGVRPDQQFIKIV 78 Query: 86 YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 YD EL+ M +PL+ + +P ++L+ G+ G GKTT KL+ + Sbjct: 79 YD--ELVQVMGEENVPLA-----EVEQKPTIVLMAGLQGTGKTTATAKLALHLRKLERSC 131 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIID 200 +L A D +R AAIDQL + D E+GSDA +A + ++A+A+ V+ +IID Sbjct: 132 LLVATDVYRPAAIDQLLTLGKQI--DVPVFELGSDADPVEIARQGVERAKAEGVNTVIID 189 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL + +MA + ++ ++ PH L V+D+ TGQ A FH G TG Sbjct: 190 TAGRLQIDEDMMAELARIKETVQ------PHETLLVVDSMTGQEAANLTRTFHEQIGITG 243 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I+TKMDG +RGG + + P+ F+GVGE + L+PF ++ I G D Sbjct: 244 AILTKMDGDSRGGAALSVRQISGAPIKFVGVGEKVEALQPFYPDRMASRILGMGD 298 >gi|126209206|ref|YP_001054431.1| signal recognition particle protein (sigma-54 like protein) [Actinobacillus pleuropneumoniae L20] gi|190151079|ref|YP_001969604.1| signal recognition particle protein (sigma-54 like protein) [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307246672|ref|ZP_07528742.1| Signal recognition particle protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307251039|ref|ZP_07532963.1| Signal recognition particle protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307255656|ref|ZP_07537460.1| Signal recognition particle protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257838|ref|ZP_07539595.1| Signal recognition particle protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307260108|ref|ZP_07541818.1| Signal recognition particle protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307264443|ref|ZP_07546029.1| Signal recognition particle protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126097998|gb|ABN74826.1| signal recognition particle protein (sigma-54 like protein) [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189916210|gb|ACE62462.1| signal recognition particle protein (sigma-54 like protein) [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306852372|gb|EFM84607.1| Signal recognition particle protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856869|gb|EFM89001.1| Signal recognition particle protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306861333|gb|EFM93323.1| Signal recognition particle protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306863744|gb|EFM95670.1| Signal recognition particle protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865754|gb|EFM97632.1| Signal recognition particle protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306870259|gb|EFN02017.1| Signal recognition particle protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 463 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 98/305 (32%), Positives = 158/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + +I RL +D +++ L ++ L+ +D+ + V ++ + ++ + Sbjct: 2 FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERALG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q L V + + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 TEVNKSLTPGQEFLKIVQSELEIAMGEANEELNL-ATQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KV++ + D +R AAI QL+ A+ DF +E +A A K A+ Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETTQKPVEIAELALKYAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DVLI+DTAGRLH + +M I ++ RVL P L +DA TGQ+A + Sbjct: 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHRVLN------PIETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|225874709|ref|YP_002756168.1| signal recognition particle protein [Acidobacterium capsulatum ATCC 51196] gi|225792689|gb|ACO32779.1| signal recognition particle protein [Acidobacterium capsulatum ATCC 51196] Length = 459 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/288 (32%), Positives = 152/288 (52%), Gaps = 21/288 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93 ++ ++E L ++ L+ +D+ + VA++++E + + + V ++V+ V + + Sbjct: 24 EENIQEALREIRVALLEADVNLNVAKELIEHIRERAVGQQVMTALSPTEQVIKIVRDELV 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 +L + F + S P VIL+ G+ G GKTT GKL+ + G + ML + D +R A Sbjct: 84 DLLGKDTARFQF-ASRPPTVILMAGLQGSGKTTTSGKLAAWLKKGGHRPMLVSVDVYRPA 142 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAA------LAYEAFKQAQAKKVDVLIIDTAGRLHN 207 A +QLK+ A+ +A + +AA LA EA ++A D LI+DTAGRLH Sbjct: 143 AREQLKVVANSINAKIYEGDTKGEAAGTALVERLAKEARREAVITGCDTLIVDTAGRLHI 202 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + LM + ++ +L AP +L V DA TGQ+A+R + FH TG+++TKMD Sbjct: 203 DDNLMDEMTRLKALL------APQEILFVADAMTGQDAVRSAQEFHRKLALTGVVLTKMD 256 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G ARGG + I PV F+G GE + EPF + I G D Sbjct: 257 GDARGGAALSIRHVTGQPVKFIGTGEKPDAFEPFHPDRIVSRILGMGD 304 >gi|148827249|ref|YP_001292002.1| Signal recognition particle protein [Haemophilus influenzae PittGG] gi|148718491|gb|ABQ99618.1| Signal recognition particle protein [Haemophilus influenzae PittGG] Length = 462 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 100/305 (32%), Positives = 158/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72 F + S +L + + +I RL +D ++E L ++ L+ +D+ + V + K+ E L Sbjct: 2 FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61 Query: 73 KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K ++ Q L V + K + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 EEVNKSLTPGQEFLKIVQHELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KV++ + D +R AAI QL+ A DF S++ + +A A A+ Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVLI+DTAGRLH ++ +M I ++ L P L +DA TGQ+A + Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF ++ I Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|33240809|ref|NP_875751.1| signal recognition particle protein [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238338|gb|AAQ00404.1| Signal recognition particle GTPase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 485 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 88/271 (32%), Positives = 139/271 (51%), Gaps = 18/271 (6%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFN--- 104 L+ +D+ ++V ++ V+E+ K +V Q+ + E++H+ L+ + N Sbjct: 38 LLEADVSLSVVKQFVQEVRDKAIGAEVVRGVNPGQKFI----EVVHQELVEVMGGANSPL 93 Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 D + +P VIL+ G+ G GKTT KL + D GLK ++ A D +R AAIDQL + Sbjct: 94 ADSTKKPSVILMAGLQGAGKTTAAAKLGLYLKDKGLKPLMVAADVYRPAAIDQLNTLGKQ 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + + S +A K+AQ + D LI+DTAGRL + +M +M+R+ Sbjct: 154 INVEVFSLGKESKPEDIAASGLKKAQEEDFDTLIVDTAGRLQIDEEMM---NEMVRIRSA 210 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 +D P VL V+D+ GQ A FH G TG ++TK+DG +RGG + I Sbjct: 211 VD---PDEVLLVVDSMIGQEAADLTRAFHEKVGITGAVLTKLDGDSRGGAALSIRKVSGQ 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + L+PF + + I G D Sbjct: 268 PIKFIGTGEKVEALQPFHPERMAGRILGMGD 298 >gi|18313822|ref|NP_560489.1| signal recognition particle protein [Pyrobaculum aerophilum str. IM2] gi|18161384|gb|AAL64671.1| signal recognition particle protein (docking protein), probable [Pyrobaculum aerophilum str. IM2] Length = 305 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 71/197 (36%), Positives = 112/197 (56%), Gaps = 6/197 (3%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 RP V++ +G NG GKTT + KL+ + + G +V+ AA DTFR+ A +QL+ R Sbjct: 109 RPVVVMFLGPNGYGKTTTLAKLAFNLQEMGFRVVAAAADTFRAGAREQLEEHGKRVGFKV 168 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G+D A++AY+A + A+A+ ++IDTAGR+H ++ LM + K+ RV + Sbjct: 169 ISGPYGADPASVAYDALQHAKARGYHFVLIDTAGRMHTDANLMEELRKIQRVTE------ 222 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH + V DA G AL + + G+I TK+D +GG ++ + K PVYFL Sbjct: 223 PHYSIFVFDAQLGNEALEIAKYYSKYVKIDGMIATKVDAYPKGGSILTFIYVLKRPVYFL 282 Query: 290 GVGEGINDLEPFVAKDF 306 GVG+ DL F +++ Sbjct: 283 GVGQTYRDLVKFSKQEY 299 >gi|227824776|ref|ZP_03989608.1| signal recognition particle protein [Acidaminococcus sp. D21] gi|226905275|gb|EEH91193.1| signal recognition particle protein [Acidaminococcus sp. D21] Length = 448 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 97/285 (34%), Positives = 156/285 (54%), Gaps = 27/285 (9%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKM 95 ++E L D+ L+ +D+ K+V+E TK + V Q++ +++ +++H+ Sbjct: 28 LKETLRDVRLALLEADVNF----KVVKEFTTK-IKERVQGQKIDPNLTAGQYIVKVVHEE 82 Query: 96 LMPL--SKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 L+ L + FS + P VI++ G+ G GKTT IGKL+ + G K ++ AGD +R Sbjct: 83 LIALLGGEQSKLQFSSNPPTVIMLAGLQGAGKTTSIGKLANYLRKNGKKPLMVAGDVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAA--ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 AAI QL++ D +GS+ + +A EA K+A A D ++IDTAGRLH + Sbjct: 143 AAITQLEVIG--KELDMPVFSMGSEVSPVTIAQEAIKRANALLCDTVLIDTAGRLHIDEK 200 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + + + P +L V+DA TGQ+A+ E F+ G TGLI+TK+DG A Sbjct: 201 LMDELKNIKSAVH------PDEILLVVDAMTGQDAVTVAEAFNKALGITGLIVTKLDGDA 254 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG ++ + PV F+G+GE ++ L+PF ++ I G D Sbjct: 255 RGGAVLSVKSVADCPVKFVGMGEKLDALQPFYPDRMASRILGMGD 299 >gi|150021672|ref|YP_001307026.1| signal recognition particle protein [Thermosipho melanesiensis BI429] gi|149794193|gb|ABR31641.1| signal recognition particle protein [Thermosipho melanesiensis BI429] Length = 435 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/271 (33%), Positives = 138/271 (50%), Gaps = 21/271 (7%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAK--------DVSVQRVLYDVSELIHKMLMPLSKPFN 104 L+ +D+ V ++ +E++ K + D ++L D ELI LM +P Sbjct: 38 LLEADVNYKVVKEFIEDVKKKALGEKVLRSLTPDQMFIKILRD--ELIK--LMGEKQPLK 93 Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 H P I++VG+ G GKTT KL+ + G K L A DT+R AAIDQL + Sbjct: 94 M--IHSPSYIMMVGLQGSGKTTSAAKLANLLKKKGRKPYLVAADTYRPAAIDQLITLGKK 151 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 C + + EA K+ + DV+I DTAGRLH ++ +M + ++ +L Sbjct: 152 IDVPVYCGD-RKHPIKIVEEALKEVKDSGYDVVIFDTAGRLHIDNEMMNELVEIKEIL-- 208 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 +P +L V+DA TGQ+A+ + F+ TG ++TKMDG ARGG ++ I Sbjct: 209 ----SPDEILMVVDAMTGQDAVNSAKTFNEKLDVTGFVVTKMDGDARGGVILSIRYVTNK 264 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 PV F+GVGE I DLE F + ++ I G D Sbjct: 265 PVKFIGVGEKIEDLEEFYPERIASRILGLGD 295 >gi|17229444|ref|NP_485992.1| signal recognition particle protein [Nostoc sp. PCC 7120] gi|17131042|dbj|BAB73651.1| signal recognition particle protein [Nostoc sp. PCC 7120] Length = 490 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/295 (31%), Positives = 150/295 (50%), Gaps = 29/295 (9%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85 D IS + D +RE + L+ +D+ + V + + E+ K +V +++ Sbjct: 20 DKISESNIQDALRE-VRRALLEADVNLQVVKDFISEVEAKAQGAEVISGVRPDQQFIKIV 78 Query: 86 YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 YD EL+ M +PL+ + +P ++L+ G+ G GKTT KL+ + Sbjct: 79 YD--ELVQVMGEENVPLA-----EVEQKPTIVLMAGLQGTGKTTATAKLALHLRKLERSC 131 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIID 200 +L A D +R AAIDQL + D E+GSDA +A + ++A+A+ V+ +IID Sbjct: 132 LLVATDVYRPAAIDQLLTLGKQI--DVPVFELGSDADPVEIARQGVERAKAEGVNTVIID 189 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL + +MA + ++ ++ PH L V+D+ TGQ A FH G TG Sbjct: 190 TAGRLQIDEDMMAELARIKETVQ------PHETLLVVDSMTGQEAANLTRTFHEQIGITG 243 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I+TKMDG +RGG + + P+ F+GVGE + L+PF ++ I G D Sbjct: 244 AILTKMDGDSRGGAALSVRQISGAPIKFVGVGEKVEALQPFYPDRMASRILGMGD 298 >gi|319441354|ref|ZP_07990510.1| signal recognition particle-docking protein FtsY [Corynebacterium variabile DSM 44702] Length = 516 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 110/287 (38%), Positives = 171/287 (59%), Gaps = 9/287 (3%) Query: 31 GITDIISSRRLDDGVREELEDLLIRSDIG----VAVAQKIVEELLTKRYAKDVSVQRVLY 86 G+ I+S+ LD+ EE+ED+LI +D+G VAV +K+ + + T+ + + +L Sbjct: 234 GVLGILSAGDLDEDAWEEIEDMLIMADLGTKTTVAVVEKLRDRIATEGVENEAQARAMLR 293 Query: 87 DVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 + LI L + + ++ +P VI+VVGVNG GKTT GKLS+ + G V+L Sbjct: 294 EC--LIEAARPELDRSIHAMPYNGKPAVIMVVGVNGTGKTTTTGKLSRVLVGMGHSVLLG 351 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 A DTFR+AA DQL+ W R A+ V + G+D A++A++A + + VDV+++DTAGRL Sbjct: 352 AADTFRAAAADQLETWGRRVGAETVRGKEGADPASVAFDAVAKGVEEGVDVVVVDTAGRL 411 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 H + LM +GK+ RV+++ V+ VLDAT GQN L Q F V +G+ +TK Sbjct: 412 HTSVGLMDQLGKVKRVVEK--KAKVDEVILVLDATVGQNGLMQARTFRDVVDISGVALTK 469 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +DG+A+GG + + +PV +G+GEG +DL PF + F + G Sbjct: 470 LDGSAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVESFVDALLG 516 >gi|289192492|ref|YP_003458433.1| GTP-binding signal recognition particle SRP54 G- domain protein [Methanocaldococcus sp. FS406-22] gi|288938942|gb|ADC69697.1| GTP-binding signal recognition particle SRP54 G- domain protein [Methanocaldococcus sp. FS406-22] Length = 451 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 96/287 (33%), Positives = 154/287 (53%), Gaps = 22/287 (7%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----LTKRYAKDVSV-QRVLYDVSELIH 93 ++L V ++++ LI++D+ V + K+ +E+ L ++ K +S + ++ V E + Sbjct: 24 KKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEELV 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 K+L +K + + ++IL+VG+ G GKTT KL++ + GLK L A DT+R A Sbjct: 84 KLLGEEAKKLELN-PKKQNIILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPA 142 Query: 154 AIDQLKIWADRTSADFVCSEIGS----DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 A +QLK A++ E + D E FK+A DVLIIDTAGR Sbjct: 143 AYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKKA-----DVLIIDTAGRHKEEK 197 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG-LIMTKMDG 268 L+ + ++ + P ++ V+D T GQ A Q + F G G +I+TK+DG Sbjct: 198 GLLEEMKQIKEITN------PDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDG 251 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +A+GGG + V K P+ F+G+GEGI+DLEPF K F + + G D Sbjct: 252 SAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGD 298 >gi|189500233|ref|YP_001959703.1| signal recognition particle protein [Chlorobium phaeobacteroides BS1] gi|189495674|gb|ACE04222.1| signal recognition particle protein [Chlorobium phaeobacteroides BS1] Length = 449 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 87/268 (32%), Positives = 143/268 (53%), Gaps = 12/268 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ VA+K V+E+ ++ +DV Q ++ VS+ + +++ KP N Sbjct: 38 LLSADVNYKVAKKFVDEVRSRALGQDVVKSVSPAQMIVKIVSDELTEIMGGEHKPLNLTT 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 + P V++V G+ G GKTT KL+K++ G +LAA D +R AA++QLK ++ Sbjct: 98 NKLPSVVMVAGLQGSGKTTFCAKLAKRLKKNGKHPLLAAADVYRPAAVEQLKTLGEQIEV 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 E+ DA +A +A + A+ DV+I+DTAGRL + +MA + LK Sbjct: 158 PVFSLEV-KDALKVALDAVESARNNGNDVVIVDTAGRLQVDEGMMAEAEALKDQLK---- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+DA GQ A+ ++F+ G+++TK+DG ARGG + I P+ Sbjct: 213 --PEELLFVVDAMIGQEAVNTAKVFNERLDFDGVVLTKLDGDARGGSALSIKQVVDKPIK 270 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ VGE ++DL+ F + I G D Sbjct: 271 FMSVGEKVDDLDLFYPDRMAQRILGMGD 298 >gi|85058523|ref|YP_454225.1| signal recognition particle protein [Sodalis glossinidius str. 'morsitans'] gi|84779043|dbj|BAE73820.1| signal recognition particle protein [Sodalis glossinidius str. 'morsitans'] Length = 453 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 101/309 (32%), Positives = 160/309 (51%), Gaps = 25/309 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72 F + S +L + +I RL +D +++ L ++ L+ +D+ + V + ++ E L Sbjct: 2 FDNLSDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFISRVKESALG 61 Query: 73 KRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + K ++ + + SEL++ M + N +H P V+L+ G+ G GKTT +GK Sbjct: 62 QEVNKSLTPGQEFVKIVRSELVNAM-GDENNSLNL-AAHPPAVVLMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + KV++ + D +R AAI QL+ A+ DF S+ G + +A QA Sbjct: 120 LGKYLREKQKKKVLVVSADVYRPAAIKQLETLAETVGVDFFPSDAGQKPIDIVNQALNQA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246 + K DVL++DTAGRLH + +MA I + HA P L V+DA TGQ+A Sbjct: 180 KLKFYDVLLVDTAGRLHVDETMMAEI---------IAIHASITPVETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TG+I+TK+DG ARGG + I P+ F+GVGE + LEPF Sbjct: 231 NTAKAFNQALPLTGVILTKVDGDARGGAALSIRHITGKPIKFMGVGEKTDALEPFYPDRL 290 Query: 307 SAVITGCLD 315 + I G D Sbjct: 291 AGRILGMGD 299 >gi|145591809|ref|YP_001153811.1| signal recognition particle-docking protein FtsY [Pyrobaculum arsenaticum DSM 13514] gi|145283577|gb|ABP51159.1| signal recognition particle-docking protein FtsY [Pyrobaculum arsenaticum DSM 13514] Length = 305 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 97/311 (31%), Positives = 155/311 (49%), Gaps = 31/311 (9%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSRRLDD-GVREELEDL---LIRSDIGVAVAQKIVEE 69 +L K F+ K E + + L + V E + +L LI +D+ V VA + EE Sbjct: 2 FNRLKKAFS----KFVESVVSTVKEDTLSEKDVNEVISNLYFDLIENDVAVEVADAVTEE 57 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMP-----LSKPFNWDF---------SHRPHVIL 115 L K+ V V R D ++ K ++ LS + DF + RP ++ Sbjct: 58 L--KKRLIGVKVPR-FGDKEAVVKKAVLDALMGVLSDVPDVDFYQDSKNRLETSRPVTVM 114 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 +G NG GKTT + KL+ + + G +V+ AA DTFR+ A +QL+ R + G Sbjct: 115 FLGPNGYGKTTTLAKLAYHLQERGFRVVAAAADTFRAGAREQLEEHGRRVGFRVIGGPYG 174 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 +D A++AY+A + A++K ++IDTAGR+H ++ LM + K+ RV++ P + Sbjct: 175 ADPASVAYDAVQHARSKGFHYVLIDTAGRMHTDANLMEELRKIQRVVE------PQYSIF 228 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V DA G AL + G+I K+D +GG ++ + T K PVYFLGVG+ Sbjct: 229 VFDAQLGNEALEIARYYSKYVKIDGMIAAKVDAYPKGGSILTFLYTLKRPVYFLGVGQSY 288 Query: 296 NDLEPFVAKDF 306 DL F +++ Sbjct: 289 KDLVQFTKQEY 299 >gi|229579653|ref|YP_002838052.1| signal recognition particle-docking protein FtsY [Sulfolobus islandicus Y.G.57.14] gi|228010368|gb|ACP46130.1| signal recognition particle-docking protein FtsY [Sulfolobus islandicus Y.G.57.14] Length = 208 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 71/199 (35%), Positives = 122/199 (61%), Gaps = 6/199 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S +P++I+ G+NGVGKTT I K + + GL +++A DTFR+AA +QL+I A Sbjct: 10 STKPYIIIFFGINGVGKTTTIAKFAYMLKKNGLSCIISASDTFRAAAQEQLEIHARNLEI 69 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + + G D A++AY+A + A+++ +DV++IDTAGR+H ++ L+ + +++ + + Sbjct: 70 PLIKGKYGGDPASVAYDAIRAAKSRGIDVVLIDTAGRMHTDTDLVNELKRVVNITR---- 125 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ + VLD+ G +AL Q + F G +I+TK+D +GG ++ + PV Sbjct: 126 --PNLKILVLDSLGGNDALEQAKYFKNNVGFDLVILTKVDADVKGGVILSLAYELNKPVG 183 Query: 288 FLGVGEGINDLEPFVAKDF 306 +LGVG+ +DL PF A+ F Sbjct: 184 YLGVGQTYDDLIPFNAEWF 202 >gi|298246119|ref|ZP_06969925.1| signal recognition particle protein [Ktedonobacter racemifer DSM 44963] gi|297553600|gb|EFH87465.1| signal recognition particle protein [Ktedonobacter racemifer DSM 44963] Length = 507 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 161/306 (52%), Gaps = 18/306 (5%) Query: 21 FASTSLKLKEGITDIISSR-RL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75 F S + +L EGI + R RL ++ V L ++ LI +D+ + VA++ V+ + K Sbjct: 4 FESLTKRL-EGIFQNLEGRGRLTEEDVNSALREVRIALIEADVNLKVARQFVDRVKEKAI 62 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 DV Q+VL V + + ++L + D + P +I++VG+ G GKTT K Sbjct: 63 GADVMGSLSPAQQVLSIVHDELVEVLGGTGESNKLDTNGNPTIIMLVGLQGSGKTTSAAK 122 Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L+ + G + +L A D +R AA++QLK + +GSD + + A Sbjct: 123 LANYLRKQNGSRPLLVAADMYRPAAVNQLKTLGKQIQVPVYSEPMGSDPVDICVHSLDYA 182 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + + +V+I+DTAGRL+ + +M +++ + +R+ PH VL V DA TGQ A+R Sbjct: 183 REQACNVIILDTAGRLNIDERMMQ---EVVNIRERV---RPHEVLLVADAMTGQEAVRVA 236 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+++TKMDG ARGG + I +PV F+ +GE ++ ++PF + Sbjct: 237 KDFNDAVSLTGMVLTKMDGDARGGAALSIRTVTSVPVKFMALGEKLDAIQPFYPDRLAQR 296 Query: 310 ITGCLD 315 I G D Sbjct: 297 ILGMGD 302 >gi|148360983|ref|YP_001252190.1| signal recognition particle protein Ffh [Legionella pneumophila str. Corby] gi|148282756|gb|ABQ56844.1| signal recognition particle protein Ffh [Legionella pneumophila str. Corby] Length = 458 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/290 (31%), Positives = 155/290 (53%), Gaps = 24/290 (8%) Query: 39 RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87 R +D ++ L ++ LI +D+ + V ++ +E++ K ++V + ++++D Sbjct: 21 RLTEDNIQHALREVRLSLIEADVALPVIKEFIEQVKQKSLGQEVLTSLNPDQAFIKIVHD 80 Query: 88 VSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLA 145 ELIH M + D+ + P V L+ G+ G GKTT KL++ + + K+M+A Sbjct: 81 --ELIHVMG---DERVELDYKTQPPAVFLMAGLQGSGKTTSTAKLARYLKETENKKIMMA 135 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 + D +R AAI QLK+ A++ F S+ +A +A + A+ + VDVLI+DTAGRL Sbjct: 136 SVDVYRPAAIHQLKVLAEQIDVAFFDSDPNEQPIKIAQKALESARKQYVDVLILDTAGRL 195 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 H + +M+ I + + + P L V+D+ TGQ+A + FH TG+I+TK Sbjct: 196 HVDEDMMSEIKSLHKAVN------PIETLFVVDSMTGQDAANTAKAFHEALPLTGVILTK 249 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG ARGG + + P+ F+G GE I +EPF + ++ I G D Sbjct: 250 TDGDARGGAALSVKQITGKPIKFIGSGEKIEAVEPFHPERIASRILGMGD 299 >gi|124028446|ref|YP_001013766.1| Signal recognition particle GTPase [Hyperthermus butylicus DSM 5456] gi|123979140|gb|ABM81421.1| Signal recognition particle GTPase [Hyperthermus butylicus DSM 5456] Length = 312 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 97/307 (31%), Positives = 158/307 (51%), Gaps = 29/307 (9%) Query: 27 KLKEGITDIISSRRLDDGVREE-----LEDLLIR---SDIGVAVAQKIV----EELLTKR 74 K + + ++ +R L REE L++L+I SD+ + VA++I EEL+ ++ Sbjct: 12 KFVDSVVEVAVTREL----REEDIAPLLDELVIELAESDVALEVAEEIANRLREELIGRK 67 Query: 75 YAKDVSVQR-VLYDVSELIHKMLMPLSKPFNWDFSHR------PHVILVVGVNGVGKTTV 127 + V+ V+ + + I +L +P + R P IL GVNGVGKTT Sbjct: 68 IPRFSDVRSLVVESLEKAIVDVLSRGYQPLDLIAEARSRSPGNPLRILFFGVNGVGKTTT 127 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 I K + G+ ++AA DT+R+ A +QL+ A++ S F+ G+D A++ Y+A + Sbjct: 128 IAKFAYMFKQNGITPVIAAADTYRAGAQEQLRRHAEKLSVPFIGGRYGADPASVVYDAIE 187 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+A+ V++ DTAGR+H + LM + K+ RV K P V+DA TG +A+ Sbjct: 188 YARARGYRVILADTAGRMHTDRDLMEELRKITRVAK------PDYRALVVDALTGNDAVE 241 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 Q F G +I+TK+D +GG + + P+ F+G G+ DLE F K ++ Sbjct: 242 QARFFDEAVGIDFIILTKVDADVKGGTALSVAAVTGKPILFVGTGQKYEDLELFDPKRYT 301 Query: 308 AVITGCL 314 I G L Sbjct: 302 EKIIGEL 308 >gi|330831191|ref|YP_004394143.1| GTP-binding export factor [Aeromonas veronii B565] gi|328806327|gb|AEB51526.1| GTP-binding export factor [Aeromonas veronii B565] Length = 458 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 98/307 (31%), Positives = 159/307 (51%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIV----EELLT 72 F + + +L + ++ RL +D ++E L ++ L+ +D+ + V + V E + Sbjct: 2 FENLTERLSRTLRNVSGRGRLTEDNIKETLREVRMALLEADVALPVVRDFVARVKERAVG 61 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIG 129 + AK +S + +++H L+ + N + P +IL+ G+ G GKTT +G Sbjct: 62 QEVAKSLSPGQAFI---KIVHGELVTVMGEANEQLNLAAQPPAIILMAGLQGAGKTTTVG 118 Query: 130 KLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+K + + + KV++ + D +R AAI QL+ A DF S+ +A A Q Sbjct: 119 KLAKLLKERSKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSDASQKPVDIATAAIDQ 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DV+I+DTAGRLH +S +MA I + +K P L V+DA TGQ+A Sbjct: 179 ARKKFYDVVIVDTAGRLHVDSEMMAEIQDLHATIK------PVETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F+ TG+I+TK DG ARGG + + PV F+G+GE + LEPF ++ Sbjct: 233 AKAFNEALPLTGVILTKADGDARGGAALSVRHITGKPVKFIGMGEKTDALEPFHPDRLAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|291278684|ref|YP_003495519.1| signal recognition particle protein [Deferribacter desulfuricans SSM1] gi|290753386|dbj|BAI79763.1| signal recognition particle protein [Deferribacter desulfuricans SSM1] Length = 447 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/205 (38%), Positives = 112/205 (54%), Gaps = 6/205 (2%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P I++VG+ G GKTT GKL+K G V+L A D +R AAIDQL+I + D Sbjct: 102 PTKIMLVGLQGSGKTTTAGKLAKYFQKNGKDVLLVADDIYRPAAIDQLEILGKQLKVDVF 161 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 DA +A EA + A++ DV+IIDTAGRLH + LM + + + P Sbjct: 162 SKRDEQDAVKIAKEAVQHAKSAAKDVVIIDTAGRLHIDETLMEELKNIKEAIN------P 215 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 +L V DA TGQ+A+ + F+ + TG+I+TK+DG ARGG + I P+ F+G Sbjct: 216 DEILFVADAMTGQDAVNVAKTFNEMLDITGVILTKLDGDARGGAALSIREVTGKPLKFVG 275 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 GE ++ EPF ++ I G D Sbjct: 276 TGEKLDAFEPFYPDRMASRILGMGD 300 >gi|89895345|ref|YP_518832.1| hypothetical protein DSY2599 [Desulfitobacterium hafniense Y51] gi|89334793|dbj|BAE84388.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 457 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 97/304 (31%), Positives = 159/304 (52%), Gaps = 17/304 (5%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S KL+E + S +L + V E + ++ L+ +D+ V + V ++ + Sbjct: 6 FQGLSEKLQETFKRLKSKGKLTEADVNEAMREVRMALLEADVNFKVVKDFVAKVKERSIG 65 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V Q+V+ V+E + ++ +S N S P VI++VG+ G GKTT KL Sbjct: 66 QEVLESLSPGQQVIKIVNEEMVALMGGVSSKINIS-SKPPTVIMLVGLQGAGKTTHGAKL 124 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + G +L A D +R AAI QL++ ++ V S + +A + + A + Sbjct: 125 ANMLKKQGKHPLLVACDIYRPAAIKQLEVLGEQIKVP-VFSLGQENPVKIAAASLQHANS 183 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +DV+IIDTAGRLH N LM + ++ +K PH +L V+DA TGQ+A+ E Sbjct: 184 QGLDVVIIDTAGRLHINEELMGELREIKVSVK------PHEILLVVDAMTGQDAVNVAES 237 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 FH G G+I+TK+DG RGG + + P+ F GVGE ++ +EPF + ++ I Sbjct: 238 FHNELGVDGIILTKLDGDTRGGAALSVKAVTGCPIKFAGVGEKMDAIEPFFPERMASRIL 297 Query: 312 GCLD 315 G D Sbjct: 298 GMGD 301 >gi|159904596|ref|YP_001548258.1| signal recognition particle-docking protein FtsY [Methanococcus maripaludis C6] gi|159886089|gb|ABX01026.1| signal recognition particle-docking protein FtsY [Methanococcus maripaludis C6] Length = 379 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 74/192 (38%), Positives = 113/192 (58%), Gaps = 6/192 (3%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P ++L VG+NG GKTT I KL+ + + G V++AAGDTFR+ AI+QL+ T Sbjct: 171 EPAILLFVGINGTGKTTSISKLAYILKERGYSVVMAAGDTFRAGAIEQLEEHGKNTDIKV 230 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + + G+D+AA+ Y+A ++AK ++V++ DTAGR N LM I K++RV K Sbjct: 231 IKHQKGADSAAVIYDAINHSKAKGINVVLADTAGRQTTNINLMDEIKKVVRVTK------ 284 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P ++ V D+ G +A+ Q E F+ G I+TK D A+GG + I P+ F+ Sbjct: 285 PDLIIFVGDSLAGNDAISQAEEFNNAINIHGAILTKTDADAKGGAALSIAYAIGKPILFM 344 Query: 290 GVGEGINDLEPF 301 GVG+ +DL+ F Sbjct: 345 GVGQRYSDLQEF 356 >gi|219851207|ref|YP_002465639.1| signal recognition particle-docking protein FtsY [Methanosphaerula palustris E1-9c] gi|219545466|gb|ACL15916.1| signal recognition particle-docking protein FtsY [Methanosphaerula palustris E1-9c] Length = 409 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 90/265 (33%), Positives = 140/265 (52%), Gaps = 16/265 (6%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEEL---LTKRYAK-----DVSVQRVLYDVSELIHKML 96 V +ELE +L+ +D+ + V ++I+ + L + K D+ V L D L+ + Sbjct: 139 VLDELEMVLLENDVALPVTEEILRHIRHDLIGSHRKIGTSPDLIVMETLKDA--LLDVLG 196 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 P RP IL GVNG GKTT + K+ + G V++ AGDTFR+ AI+ Sbjct: 197 EGFDLPAYIRTHDRPVKILFTGVNGTGKTTTVAKVGAFLLKNGFSVVIGAGDTFRAGAIE 256 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 Q+ I A+R + + G D +A+ ++ + A + ++DV++ DTAGR HN + LM + Sbjct: 257 QIDIHAERLGIKVIQHQQGGDPSAVLFDTVQYAISHQIDVVLADTAGRFHNRANLMNQLA 316 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 K+ RV+K P V+ V +A G +A+ + E F G +++TK D +GG I Sbjct: 317 KVKRVMK------PDLVVYVDEAVAGNDAVIRAEEFEKTVGADAVVLTKADMDPKGGAAI 370 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301 I T P+ FLGVG+G DL PF Sbjct: 371 SIAHTIGKPLMFLGVGQGYEDLIPF 395 >gi|164658964|ref|XP_001730607.1| hypothetical protein MGL_2403 [Malassezia globosa CBS 7966] gi|159104503|gb|EDP43393.1| hypothetical protein MGL_2403 [Malassezia globosa CBS 7966] Length = 617 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 93/297 (31%), Positives = 144/297 (48%), Gaps = 23/297 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEE--------LLTKR 74 +L + +D+ LD D + +++ L+ SD+ V + QK+ ++ L K Sbjct: 9 RLNQAFSDLQRQPTLDAASVDQLLKDVCSALLASDVNVRLVQKLRQDVKDEVSSLLNDKG 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-----PHVILVVGVNGVGKTTVIG 129 A+ + + + V ++ L+ L P + HR HVI+ VG+ G GKTT Sbjct: 69 KAESYTDAQRKHQVQRIVFDYLVKLVDPGDGSTKHRLDKGQQHVIMFVGLQGSGKTTSCT 128 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ G + L DTFR+ A DQLK A + F S +D A+A Sbjct: 129 KLALWYQKRGYRTGLVCADTFRAGAFDQLKQNAAKARIPFYGSYTETDPVAIASAGVTSF 188 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + + DV+I+DT+GR L A + + R +K P + VLDA+ GQ A Q Sbjct: 189 KKNRFDVIIVDTSGRHKQEKDLFAEMVDISRAVK------PSQTIMVLDASIGQAAEAQC 242 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F A + +TK+DG A+GGG I V + + P+ F+G GE ++DLEPF A+ F Sbjct: 243 RAFKEAADFGAMFVTKLDGHAKGGGAISAVASTQTPIIFIGTGEHVHDLEPFRARPF 299 >gi|257052404|ref|YP_003130237.1| signal recognition particle-docking protein FtsY [Halorhabdus utahensis DSM 12940] gi|256691167|gb|ACV11504.1| signal recognition particle-docking protein FtsY [Halorhabdus utahensis DSM 12940] Length = 394 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 90/259 (34%), Positives = 135/259 (52%), Gaps = 19/259 (7%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH----KMLMPLSKPFNWDFS 108 L+ SD+ ++VA +I++ + + +R L L+ + L + +DF Sbjct: 132 LLSSDVEMSVAGEILDGVEANLVGE---TRRRLQSTGNLVQDSLREALYDVISVGQFDFE 188 Query: 109 HR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 R P VI+ GVNGVGKTT I KL++ + D G +LA GDT+R+ A QL A Sbjct: 189 ERIAAAEKPVVIVFTGVNGVGKTTTIAKLAQYLEDRGHSSVLANGDTYRAGANQQLGEHA 248 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 + ++ E G D A+ Y+A + A+A VDV++ DTAGRLH + LM + K+ R++ Sbjct: 249 EALDVPYISHEQGGDPTAVIYDAVEYAEANDVDVVLGDTAGRLHTSEGLMDQLSKIERII 308 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 + P L V +A GQ+A+ + F A A G I+TK D +GG I I Sbjct: 309 E------PDMTLFVDEAVAGQDAVTRATEFDAAAEIDGTILTKADADPQGGAAISIAHVT 362 Query: 283 KIPVYFLGVGEGINDLEPF 301 P+ FLG G+G + LE F Sbjct: 363 GKPILFLGTGQGYDHLERF 381 >gi|301168764|emb|CBW28355.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Haemophilus influenzae 10810] Length = 462 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 99/305 (32%), Positives = 156/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + +I RL +D ++E L ++ L+ +D+ + V + + ++ Sbjct: 2 FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVCEFIAKVKASALG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV+ Q L V + K + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 EDVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KV++ + D +R AAI QL+ A DF S++ + +A A A+ Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVLI+DTAGRLH + +M I ++ L P L +DA TGQ+A + Sbjct: 181 LKFYDVLIVDTAGRLHVDIEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|119719346|ref|YP_919841.1| signal recognition particle-docking protein FtsY [Thermofilum pendens Hrk 5] gi|119524466|gb|ABL77838.1| signal recognition particle-docking protein FtsY [Thermofilum pendens Hrk 5] Length = 302 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 74/193 (38%), Positives = 111/193 (57%), Gaps = 6/193 (3%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 IL +G NG GKTT + KL+ + G +V +AA DTFR+ +I+Q+ WA R A+ V Sbjct: 110 ILFLGPNGHGKTTTVAKLAYRFRKQGYRVAIAAADTFRAGSIEQVSQWASRAGAEVVSLG 169 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +D AA+AYEA K+ + V++IDTAGR+H LM + K+ RV +P Sbjct: 170 YNADPAAVAYEAVKKGEKGDFQVVLIDTAGRMHTKKNLMDEMKKIARV------ASPDFK 223 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 + V DA G +A+ Q + F + G G I+TK D RGG + +V K P+ ++G G+ Sbjct: 224 VFVGDALVGNDAVEQAKTFFSEVGFDGSILTKFDADIRGGAALSVVYVTKKPLLYVGTGQ 283 Query: 294 GINDLEPFVAKDF 306 GI DL+ F +++ Sbjct: 284 GIEDLKEFNVEEY 296 >gi|254421926|ref|ZP_05035644.1| signal recognition particle protein [Synechococcus sp. PCC 7335] gi|196189415|gb|EDX84379.1| signal recognition particle protein [Synechococcus sp. PCC 7335] Length = 491 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 104/312 (33%), Positives = 158/312 (50%), Gaps = 31/312 (9%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 L++ F S KL+ D IS + + +RE + L+ +D + V + V ++ K Sbjct: 5 LSEQFESAWKKLRG--QDKISDANITEALRE-VRRALLEADANLDVVKGFVADVKEKAQG 61 Query: 77 KDV--------SVQRVLYDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 DV +++YD EL+ M +PL+ D ++P V+L+ G+ G GKT Sbjct: 62 ADVVSGVRPDQQFIKIVYD--ELVETMGDTNVPLA-----DSENKPTVVLMAGLQGTGKT 114 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAY 183 T KL+ + +L A D +R AAIDQL + D EIG+DA +A Sbjct: 115 TASAKLALHLRKQERSALLVATDVYRPAAIDQLLTLGKQI--DVPVFEIGADANPVEIAR 172 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 + K+A+A +D +IIDTAGRL ++ +MA + ++ V + P VL V+DA TGQ Sbjct: 173 QGLKKAKADGIDTVIIDTAGRLQIDTDMMAELAQVKEVAQ------PDEVLLVVDAMTGQ 226 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 A FH G TG I+TKMDG +RGG + + P+ F+GVGE + L+PF Sbjct: 227 EAATLTRTFHDEIGITGAILTKMDGDSRGGAALSVRRISGQPIKFIGVGEKVEALQPFYP 286 Query: 304 KDFSAVITGCLD 315 ++ I G D Sbjct: 287 DRMASRILGMGD 298 >gi|70607206|ref|YP_256076.1| signal recognition particle [Sulfolobus acidocaldarius DSM 639] gi|68567854|gb|AAY80783.1| signal recognition particle [Sulfolobus acidocaldarius DSM 639] Length = 208 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 71/192 (36%), Positives = 115/192 (59%), Gaps = 6/192 (3%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P VI+ GVNGVGKTT I K+ + L ++AA DTFR+AA +QL A + Sbjct: 11 KPFVIIFFGVNGVGKTTTIAKVVNMLKKNNLSTIIAASDTFRAAAQEQLAYHASKLEVQL 70 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + + G+D A++A++A A+++ +DV++IDTAGR+H +S L+ + +++R+ K Sbjct: 71 IRGKYGADPASVAFDAISFAKSRNIDVVLIDTAGRMHIDSDLVEELKRVLRIAK------ 124 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P + +LD+ G +AL Q F G +I+TK+D A+GG + + K PV ++ Sbjct: 125 PDFRILILDSLAGSDALEQARHFENNVGYDAVILTKVDADAKGGIALSLAYELKKPVVYM 184 Query: 290 GVGEGINDLEPF 301 GVG+ +DL PF Sbjct: 185 GVGQNYDDLIPF 196 >gi|303241509|ref|ZP_07328010.1| signal recognition particle protein [Acetivibrio cellulolyticus CD2] gi|302590927|gb|EFL60674.1| signal recognition particle protein [Acetivibrio cellulolyticus CD2] Length = 450 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 96/307 (31%), Positives = 163/307 (53%), Gaps = 22/307 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDD-GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S KL+E I + R+++ V+E + ++ L+ +D+ V + + ++ + Sbjct: 3 FEGLSNKLQETIKKLKGKGRVNEKDVKEMMREIKLALLEADVNFKVVKDFIAKVSERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPH-VILVVGVNGVGKTTVI 128 +DV Q+++ +++H+ L+ L P F+ +P V ++VG+ G GKTT Sbjct: 63 QDVLESLTPGQQII----KIVHEELINLMGPGQSKVVFAPKPPTVYMMVGLQGSGKTTTS 118 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ + G +L A D +R AAI QL++ + D ++ +A A + Sbjct: 119 GKLANLLRKQGKNPLLVACDVYRPAAIKQLQVVGGQLGVDVFSMGDQTNPVDIAKAAVEH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K+ D++IIDTAGRLH + LM + K I+ D PH +L V+D+ TGQ+A+ Sbjct: 179 AKIKQYDLVIIDTAGRLHIDEKLMDEL-KNIK-----DTVRPHEILLVVDSMTGQDAVNV 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 E F+ G G+I+TK+DG RGG + + P+ F+G+GE ++DLEPF ++ Sbjct: 233 SETFNEKLGVDGVILTKLDGDTRGGAALSVKTVTGKPIKFIGMGEKLSDLEPFFPDRMAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|315230023|ref|YP_004070459.1| signal recognition particle [Thermococcus barophilus MP] gi|315183051|gb|ADT83236.1| signal recognition particle [Thermococcus barophilus MP] Length = 448 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 93/274 (33%), Positives = 140/274 (51%), Gaps = 15/274 (5%) Query: 48 ELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKP 102 +++ LI SD+ V + +KI + L ++ VS + ++ V E + L +KP Sbjct: 34 DIQRALIMSDVNVKLVLDLTKKIQKRALEEKPPAGVSRREHIIKIVYEELTNFLGKEAKP 93 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 + +P ++L VG+ G GKTT + KL++ G KV L DT+R A QLK Sbjct: 94 I--EIKEKPTILLTVGIQGSGKTTTVAKLARYFQKRGYKVGLVCSDTWRPGAYHQLKQLV 151 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 + S + DA LA E + + K VD++I+D+AGR L I + Sbjct: 152 EPYSIEVFGDPNEKDAVRLAKEGVEYFKHKGVDIIIVDSAGRHKEEKSL-------IEEM 204 Query: 223 KRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 K++ D PH V+ V+D T GQ A Q F +I+TK+DG+A+GGG + VV Sbjct: 205 KQISDAINPHEVILVIDGTIGQQAYSQALAFKEATPIGSIIVTKLDGSAKGGGALSAVVA 264 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+GVGE I+DLEPF K F + + G D Sbjct: 265 TGAPIKFIGVGERIDDLEPFDPKRFVSRLLGLGD 298 >gi|3746903|gb|AAC64109.1| signal recognition particle 54 kDa subunit precursor [Pisum sativum] Length = 525 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 99/310 (31%), Positives = 159/310 (51%), Gaps = 27/310 (8%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLL-IRSDIGVAVAQKIVEEL---- 70 +LT G S KLK ++++ + + E + D+ R+D+ + V ++ V+ + Sbjct: 41 QLTSGLESAWNKLKR--EEVLTK----ENIVEPMRDIRRARADVSLPVVRRFVQSVTDKA 94 Query: 71 ----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKT 125 +T+ D + ++++D EL+ M +S+ F++ P VIL+ G+ GVGKT Sbjct: 95 VGVGVTRGVKPDQQLVKIVHD--ELVQLMGGEVSE---LTFANSGPTVILLAGLQGVGKT 149 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 TV KL+ G ML AGD +R AAID L I + + + +A + Sbjct: 150 TVCAKLATYFKKQGKSCMLVAGDVYRPAAIDXLTILGKQVDVPVYAAGTDVKPSVIAKQG 209 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 F++A+ KK+DV+I+DTAG L + +M + ++ +VL P VL V+DA TGQ A Sbjct: 210 FEEAKKKKIDVVIVDTAGSLQIDKAMMDELKEVKQVLN------PTEVLLVVDAMTGQEA 263 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 V F+ G TG I+TK+DG +RGG + + P+ +G GE + DLEPF Sbjct: 264 AALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDR 323 Query: 306 FSAVITGCLD 315 + I G D Sbjct: 324 MAGRILGMGD 333 >gi|223995257|ref|XP_002287312.1| signal recognition particle 54 kDA subunit [Thalassiosira pseudonana CCMP1335] gi|220976428|gb|EED94755.1| signal recognition particle 54 kDA subunit [Thalassiosira pseudonana CCMP1335] Length = 486 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 94/281 (33%), Positives = 144/281 (51%), Gaps = 18/281 (6%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ----RVLYDVSELIHKM----- 95 VR L D + D+ A+ + L K K V+ + + +YD EL+ M Sbjct: 34 VRRALLDADVNLDVATALIDGVKRRSLGKEVTKGVTAEQQFIKAMYD--ELLDMMGGEAN 91 Query: 96 -LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 ++ + ++ P VIL+ G+ G GKTT GKL+ ++ KV+L A D +R AA Sbjct: 92 ESNTMATLAHSSVANEPAVILLAGLQGAGKTTAAGKLAFRLPKRNRKVLLVAADVYRPAA 151 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 I+QL+I + + + +D A +A EA ++A+ + D +++DTAGR + LM Sbjct: 152 IEQLQILGKQIGVEVFSMGVDADPADIAKEAVEKAKREGFDTVVVDTAGRQVVDEELME- 210 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 ++ RV K ++ P L V+DA TGQ A F A G +G I+TK+DG +RGG Sbjct: 211 --ELRRVKKTVE---PDETLLVVDAMTGQAAASLTASFDAAVGISGAILTKLDGDSRGGA 265 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+GVGE NDLEPF ++ I G D Sbjct: 266 AVSIRGVSGKPIKFVGVGEKTNDLEPFYPDRMASRILGMGD 306 >gi|125973288|ref|YP_001037198.1| signal recognition particle subunit FFH/SRP54 (srp54) [Clostridium thermocellum ATCC 27405] gi|256003768|ref|ZP_05428756.1| signal recognition particle protein [Clostridium thermocellum DSM 2360] gi|281417492|ref|ZP_06248512.1| signal recognition particle protein [Clostridium thermocellum JW20] gi|125713513|gb|ABN52005.1| signal recognition particle subunit FFH/SRP54 (srp54) [Clostridium thermocellum ATCC 27405] gi|255992329|gb|EEU02423.1| signal recognition particle protein [Clostridium thermocellum DSM 2360] gi|281408894|gb|EFB39152.1| signal recognition particle protein [Clostridium thermocellum JW20] gi|316940480|gb|ADU74514.1| signal recognition particle protein [Clostridium thermocellum DSM 1313] Length = 446 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/308 (30%), Positives = 163/308 (52%), Gaps = 24/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S KL+E + + R+ + V+E + ++ L+ +D+ K+V++ + K Sbjct: 3 FEGLSGKLQEAMKKLRGKGRVTEKDVKEMMREIKLALLEADVNF----KVVKDFIGKVSE 58 Query: 77 KDVSVQRVLYDVS------ELIHKMLMPLSKPFNWD--FSHRPHVI-LVVGVNGVGKTTV 127 + V Q VL ++ +++H+ L+ L N FS +P I ++VG+ G GKTT Sbjct: 59 RAVG-QEVLESLTPGQQVIKIVHEELINLMGSANSKVTFSSKPPTIYMMVGLQGSGKTTT 117 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 GKL+ + G K +L A D +R AAI QL++ + + ++ +A A + Sbjct: 118 SGKLANLLRKQGKKPLLVACDVYRPAAIKQLQVVGSQLGIEVFSMGDKTNPVDIAKAAVE 177 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A++++ D++IIDTAGRLH N LM + + ++ P +L V+D+ TGQ+A+ Sbjct: 178 YAKSRQYDLVIIDTAGRLHINEELMEELQNIKEAVR------PQEILLVVDSMTGQDAVN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 E F+ G G+I+TK+DG RGG + + P+ F+G+GE +ND+EPF + Sbjct: 232 VAESFNEKLGVDGIILTKLDGDTRGGAALSVKAVTGKPIKFIGMGEKLNDIEPFFPDRMA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|238909520|ref|ZP_04653357.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 453 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 100/306 (32%), Positives = 162/306 (52%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V+E L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +V+ Q + V SEL+ M ++ N + P V+L+ G+ G GKTT +GK Sbjct: 62 HEVNKSLTPGQEFVKIVRSELVAAM-GEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVL++DTAGRLH + +M I ++ +K P L V+DA TGQ+A Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+++TK+DG ARGG + I P+ FLGVGE + LEPF ++ Sbjct: 234 KAFNEALSLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|254495801|ref|ZP_05108713.1| signal recognition particle protein Ffh [Legionella drancourtii LLAP12] gi|254354958|gb|EET13581.1| signal recognition particle protein Ffh [Legionella drancourtii LLAP12] Length = 459 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 94/291 (32%), Positives = 156/291 (53%), Gaps = 24/291 (8%) Query: 38 SRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS----- 89 +R ++ V+ L ++ LI +D+ + V + ++ + K Q VL D++ Sbjct: 20 ARLTEENVQSALREVRFSLIEADVALPVIKDFIDRVKQKALG-----QEVLNDLNPDQAF 74 Query: 90 -ELIHKMLMPL--SKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVML 144 +++H L+ + + DF + P V L+ G+ G GKTT KL++ + + KVM+ Sbjct: 75 VKIVHDELILVMGGERAELDFKTQPPAVFLMAGLQGSGKTTSTAKLARYLKETENKKVMV 134 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 A+ D +R AAI QLK+ A++ F +E A+A +A A+ + +DVLI+DTAGR Sbjct: 135 ASVDVYRPAAIQQLKVLAEQIGVTFFPAEAHEQPLAIAQKALDSAKKQYMDVLILDTAGR 194 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 LH ++ +MA I + + +K P L V+D+ TGQ+A + FH TG+I+T Sbjct: 195 LHVDAEMMAEIKALHQAIK------PIETLFVVDSMTGQDAANTAKAFHEALPLTGVILT 248 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 K DG ARGG + + P+ F+G GE ++ LEPF + ++ I G D Sbjct: 249 KTDGDARGGAALSVKQITGQPIKFIGSGEKVDALEPFHPERIASRILGMGD 299 >gi|242398400|ref|YP_002993824.1| Signal recognition particle GTPase [Thermococcus sibiricus MM 739] gi|242264793|gb|ACS89475.1| Signal recognition particle GTPase [Thermococcus sibiricus MM 739] Length = 300 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/196 (40%), Positives = 115/196 (58%), Gaps = 10/196 (5%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 +P VI+ VG NG GKTT I KL+ + GL V++AA DTFR+ AI+Q++ A R Sbjct: 101 EEKPFVIVFVGFNGGGKTTTIAKLANWLKKNGLSVVIAASDTFRAGAIEQVEEHAKRVGV 160 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + SD AA+AY++ + A+A+ +DV+++DTAGR N LM + K+ RV K Sbjct: 161 KVIKHGYKSDPAAVAYDSIEHAKARGIDVVLVDTAGRNELNRNLMDEMKKIARVTK---- 216 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI--P 285 P V+ V D+ G L Q F+ G+I+TK+D ARGG + V+H I P Sbjct: 217 --PDLVIFVGDSLAGNAILEQARQFNEAVKIDGVILTKLDADARGG--TALSVSHAIGAP 272 Query: 286 VYFLGVGEGINDLEPF 301 + F+G+G+G +DL PF Sbjct: 273 ILFVGIGQGYDDLIPF 288 >gi|284047845|ref|YP_003398184.1| signal recognition particle protein [Acidaminococcus fermentans DSM 20731] gi|283952066|gb|ADB46869.1| signal recognition particle protein [Acidaminococcus fermentans DSM 20731] Length = 448 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 78/210 (37%), Positives = 120/210 (57%), Gaps = 10/210 (4%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 ++ P VI++VG+ G GKTT +GKL+ + G K ++ AGD +R AAI QL++ + Sbjct: 98 ANPPTVIMLVGLQGAGKTTTVGKLANYLRKNGKKPLMVAGDVYRPAAITQLEVIGKQL-- 155 Query: 168 DFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 D +G + +A E+ K+A A D ++IDTAGRLH + LM + M + Sbjct: 156 DMPVFSMGDQVSPVEIARESLKRANALLCDTVLIDTAGRLHVDETLMNELKDMKTAVN-- 213 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P +L V+DA TGQ+A+ + F+ G TGLI+TK+DG ARGG ++ + P Sbjct: 214 ----PDEILLVVDAMTGQDAVTVADSFNKALGITGLIVTKLDGDARGGAVLSVKAVTNCP 269 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 V F+G+GE ++ L+PF ++ I G D Sbjct: 270 VKFVGMGEKLDALQPFYPDRMASRILGMGD 299 >gi|330836478|ref|YP_004411119.1| signal recognition particle subunit FFH/SRP54 (srp54) [Spirochaeta coccoides DSM 17374] gi|329748381|gb|AEC01737.1| signal recognition particle subunit FFH/SRP54 (srp54) [Spirochaeta coccoides DSM 17374] Length = 444 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 98/292 (33%), Positives = 148/292 (50%), Gaps = 25/292 (8%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87 IS + + D V EE++ L+ +D+ + V ++ V L + + V +++YD Sbjct: 22 ISEKNVRDAV-EEIKLALLDADVNLRVVRRFVNGTLDEALGEKVLSAVDPGQQFVKIVYD 80 Query: 88 VSELIHKMLMPLSKPFNWDFSHR-PHV---ILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143 +M+ L P S R P V IL++G+ G GKTT KL+ ++ G + + Sbjct: 81 ------RMVALLGDPEGQKLSLRGPDVVTVILMMGLQGSGKTTTSAKLALRLKKEGRRPL 134 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 LAA D R AAIDQL++ + SD +A +A +A+ ++ DVLIIDTAG Sbjct: 135 LAAADLVRPAAIDQLQVLGSKVDVPVHVLPGASDPVKVAVDALARAKREQRDVLIIDTAG 194 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 R+H + LM I K+ +K P L V DA TGQNA+ E F G +G+I+ Sbjct: 195 RMHLDDTLMTEIKKVRDAVK------PDETLFVADAMTGQNAVSIAEEFEKRIGISGVIL 248 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +K D ARGG + + P+ F+GVGE D EPF + ++ I G D Sbjct: 249 SKFDSDARGGAALSLRSVVGKPIKFIGVGEKPEDFEPFYPERMASRILGMGD 300 >gi|255318633|ref|ZP_05359864.1| signal recognition particle protein [Acinetobacter radioresistens SK82] gi|262379142|ref|ZP_06072298.1| signal recognition particle protein [Acinetobacter radioresistens SH164] gi|255304315|gb|EET83501.1| signal recognition particle protein [Acinetobacter radioresistens SK82] gi|262298599|gb|EEY86512.1| signal recognition particle protein [Acinetobacter radioresistens SH164] Length = 471 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 94/309 (30%), Positives = 166/309 (53%), Gaps = 25/309 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + ++ S +L +D +++ L ++ L+ +D+ + V ++ + ++ + Sbjct: 2 FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEQALG 61 Query: 77 KDVSVQ--------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTV 127 ++V Q +++YD + KM+ ++ + D + +P VI L+ G+ G GKTT Sbjct: 62 QEVMSQLSPGQAFVKIVYDE---LTKMMGEANE--SLDLAAKPPVIVLLAGLQGAGKTTT 116 Query: 128 IGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL++ + + KV + + D +R AAI QL+ A+ A+F+ S D +A A Sbjct: 117 AAKLARFLKERQKKKVAMVSADIYRPAAIKQLQTVANEVGAEFIESSADEDPIVIANRAI 176 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 +QA+ K DVLI+DTAGRLH + +M I + ++ P L V+DA TGQ+A Sbjct: 177 EQAKIKFADVLIVDTAGRLHIDDDMMGEIKALHAAIQ------PTETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TG+I+TK DG ARGG + + P+ FLG+GE ++ LEPF + Sbjct: 231 NTAKAFNDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPFHPERV 290 Query: 307 SAVITGCLD 315 + I G D Sbjct: 291 AQRILGMGD 299 >gi|212223269|ref|YP_002306505.1| signal recognition particle protein Srp54 [Thermococcus onnurineus NA1] gi|229558607|sp|B6YSS1|SRP54_THEON RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|212008226|gb|ACJ15608.1| signal recognition particle, SRP54 subunit [Thermococcus onnurineus NA1] Length = 448 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 98/323 (30%), Positives = 154/323 (47%), Gaps = 33/323 (10%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 M+ +K+ + +RKL + +KE + DI + LI++D+ V Sbjct: 1 MALEKLGKALNNALRKLARSSTVDEATIKEVVRDI--------------QRALIQADVNV 46 Query: 61 A--------VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112 + ++ +EE +K + +++Y E + K L +KP + +P Sbjct: 47 RLVLDLTKRIEKRALEEEPPTGVSKKEHIIKIVY---EELTKFLGTEAKPI--EIKEKPT 101 Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 V+L VG+ G GKTT I KL++ G KV L DT+R A QLK + + Sbjct: 102 VLLTVGIQGSGKTTSIAKLARYFQKRGYKVGLVCSDTWRPGAYQQLKQLVEPFGIEVFGD 161 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 DA LA E + + K VD++I+D+AGR L+ + ++ +K PH Sbjct: 162 PEEKDAIKLAKEGVEHFREKGVDIIIVDSAGRHKEEKSLIEEMKQISAAIK------PHE 215 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 V+ V+D T GQ A Q F +I+TK+DG+A+GGG + V P+ F+GVG Sbjct: 216 VILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGVG 275 Query: 293 EGINDLEPFVAKDFSAVITGCLD 315 E I+DLEPF K F + + G D Sbjct: 276 ERIDDLEPFDPKRFVSRLLGLGD 298 >gi|288559662|ref|YP_003423148.1| signal recognition particle receptor FtsY [Methanobrevibacter ruminantium M1] gi|288542372|gb|ADC46256.1| signal recognition particle receptor FtsY [Methanobrevibacter ruminantium M1] Length = 576 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 73/192 (38%), Positives = 115/192 (59%), Gaps = 6/192 (3%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+NG GKTT IGKL+ G ++AA DTFR+ AI+Q+ AD+ Sbjct: 380 EPLVVMLVGINGTGKTTTIGKLANFYIKKGYTPVIAASDTFRAGAIEQVAYHADKLGVKL 439 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + E GSD AA+A++A + A+AK ++++IDTAGR+ N+ LM + K+ RV K Sbjct: 440 IKHEKGSDPAAVAFDAVQHAKAKGKELVLIDTAGRMQTNTNLMDEMKKIRRVSK------ 493 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P V+ V DA TG +A Q F+ G+I+TK D ++GG + + + P+ FL Sbjct: 494 PDLVVFVGDALTGNDATEQARKFNEAIDIDGVILTKADADSKGGAALSVGYIIQKPILFL 553 Query: 290 GVGEGINDLEPF 301 G+G+ +D++ + Sbjct: 554 GMGQSYDDIKEY 565 >gi|126696809|ref|YP_001091695.1| signal recognition particle protein (SRP54) [Prochlorococcus marinus str. MIT 9301] gi|126543852|gb|ABO18094.1| signal recognition particle protein (SRP54) [Prochlorococcus marinus str. MIT 9301] Length = 492 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 91/286 (31%), Positives = 152/286 (53%), Gaps = 14/286 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 IS ++D ++E ++ L+ +D+ ++V ++ + ++ K ++V Q+ + V++ Sbjct: 22 ISENNINDALKE-VKRALLDADVSLSVVKEFITDVKDKAIGEEVVRGVNPGQKFIEVVNK 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + K++ + P N + + P VIL+ G+ G GKTT GKL + + KV+L A D + Sbjct: 81 ELIKIMGNENSPLNEN-ENSPTVILMAGLQGAGKTTATGKLGLYLKEKDKKVLLVAADIY 139 Query: 151 RSAAIDQLKIWADRTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 R AA++QLK + + F E S +A EA A + +IIDTAGRL + Sbjct: 140 RPAAVEQLKTLGSQYELEVFSAKEKNSKPEEIAKEALNFANENDFNSIIIDTAGRLQIDD 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 +M+ +M+R+ + P VL V+D+ GQ A + FH G TG I+TK+DG Sbjct: 200 SMMS---EMVRIK---EVSNPDEVLLVVDSMIGQEAADLTKSFHEKVGITGAILTKLDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + I P+ F+GVGE I L+PF + ++ I G D Sbjct: 254 SRGGAALSIRKISGKPIKFIGVGEKIEALQPFHPERMASRILGMGD 299 >gi|149173194|ref|ZP_01851825.1| signal recognition particle protein [Planctomyces maris DSM 8797] gi|148848000|gb|EDL62332.1| signal recognition particle protein [Planctomyces maris DSM 8797] Length = 492 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 98/319 (30%), Positives = 163/319 (51%), Gaps = 30/319 (9%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 SN K A L+ KLT+G +++G+ + VR+ L + + +I + Sbjct: 7 SNLKTALSGLARGGKLTEG------NIRDGLRE----------VRQALLEADVNYEIATS 50 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH---VILVVG 118 +++ E+ + ++ K V R + ++H+ L+ L P F++RP VI++ G Sbjct: 51 FIERVTEQSVGEKVLKSV---RPDEQIVGIVHQELINLMGPVEPGFAYRPSGITVIMMCG 107 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSD 177 + G GKTT GKL++ + + G K ML A D R AAI+QLK+ A + + G++ Sbjct: 108 LQGSGKTTTCGKLARLLKEQGRKPMLVAADLQRPAAIEQLKVIAGQVDVPVHAEAPDGNN 167 Query: 178 AAALAYEAFKQAQA-KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 A + QA+ VD +I+DTAGRLH ++ LM + ++ R L+ P V+ Sbjct: 168 AVKVCQNGLNQAKKLGNVDTVILDTAGRLHVDADLMKELEQIERKLQ------PDQVIFA 221 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 DA TGQ+A+ + F+ G+I+TK+DG RGG + + +P+ F+GVGE ++ Sbjct: 222 CDAMTGQDAVNSAKAFNDALELDGVILTKLDGDTRGGAALSVKEVTGVPIKFIGVGEALD 281 Query: 297 DLEPFVAKDFSAVITGCLD 315 LE F + I G D Sbjct: 282 RLEQFHPDRMAGRILGMGD 300 >gi|159041443|ref|YP_001540695.1| signal recognition particle-docking protein FtsY [Caldivirga maquilingensis IC-167] gi|157920278|gb|ABW01705.1| signal recognition particle-docking protein FtsY [Caldivirga maquilingensis IC-167] Length = 302 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 99/307 (32%), Positives = 161/307 (52%), Gaps = 26/307 (8%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEE 69 +L F+S L + I D ++ R L +D V + E E+ LI D+ + A+ ++ E Sbjct: 2 FNRLKSAFSS----LVKAIGDAVTQRELTEDDVNKLLGEFEERLIEYDVALDTAEALISE 57 Query: 70 LLTKRYAKDVSVQRVLYD--VSELIHKMLMPL-SKPFNWDFSH-------RPHVILVVGV 119 L K V V R + V L+ LM L S + DF RP V+L +G Sbjct: 58 LKAKLIG--VKVPRFSDNDYVKALVRDTLMNLLSSIPDVDFDEFIKGVKKRPIVLLFLGP 115 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NG GKTT I KL+ + G+ V+ AA DT+R+ A++QL+ A + + GSD A Sbjct: 116 NGYGKTTTIAKLTNMLLKRGMSVVWAAADTYRAGAVEQLEGHAAKLGVRVIKHPYGSDPA 175 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++AY+A + A+A+ + V++IDTAGR+H + LM + K+ RV +P + + ++DA Sbjct: 176 SVAYDAIEHAKARGISVVMIDTAGRMHTDRNLMEELRKVHRV------SSPDASIFIVDA 229 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 G +A+ + +++TK+D +GG ++ ++ K P+ FLG G+G +DL Sbjct: 230 LMGNDAVDVARTYSKYIPIDFVVVTKVDAYVKGGVILTLLYELKKPIIFLGTGQGYDDLI 289 Query: 300 PFVAKDF 306 F DF Sbjct: 290 KFNKLDF 296 >gi|134045929|ref|YP_001097415.1| signal recognition particle-docking protein FtsY [Methanococcus maripaludis C5] gi|132663554|gb|ABO35200.1| signal recognition particle-docking protein FtsY [Methanococcus maripaludis C5] Length = 383 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 75/195 (38%), Positives = 113/195 (57%), Gaps = 6/195 (3%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+L VG+NG GKTT I KL+ + + G ++AAGDTFR+ AI+QL+ T Sbjct: 175 EPAVLLFVGINGTGKTTSISKLAYILKERGYSAVMAAGDTFRAGAIEQLEEHGKNTDIKV 234 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + + G+D+AA+ Y+A A+AK ++V++ DTAGR N LM I K++RV K Sbjct: 235 IKHQKGADSAAVIYDAINHAKAKGLNVVLADTAGRQTTNINLMDEIKKVVRVTK------ 288 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P ++ V D+ G +A+ Q E F+ G I+TK D A+GG + I P+ F+ Sbjct: 289 PDLIIFVGDSLAGNDAISQAEEFNNAINIDGAILTKTDADAKGGAALSIAYAIGKPILFM 348 Query: 290 GVGEGINDLEPFVAK 304 G+G+ +DL+ F K Sbjct: 349 GIGQRYSDLQEFDVK 363 >gi|302344587|ref|YP_003809116.1| signal recognition particle protein [Desulfarculus baarsii DSM 2075] gi|301641200|gb|ADK86522.1| signal recognition particle protein [Desulfarculus baarsii DSM 2075] Length = 445 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 92/285 (32%), Positives = 147/285 (51%), Gaps = 13/285 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 +S + D +RE + L+ +D+ VA+ V + + ++V Q+V+ V E Sbjct: 22 LSEANIADALRE-VRLALLEADVNYKVAKDFVAGVRERAVGQEVMKSLTPAQQVIKIVRE 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + ++ ++ N P V+++VG+ G GKTT GKL++ ++ G K +L D Sbjct: 81 ELSSLMGGQAEGLNL-IGRPPQVLMMVGLQGAGKTTTAGKLARMLAGMGKKPLLVPADVQ 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAI+QLK + S+ G D + A A D LI+DTAGRLH + Sbjct: 140 RPAAIEQLKKLGAQLGVPVHDSDPGGDPVDICVRALGTASRLGCDALILDTAGRLHIDEP 199 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LMA ++ R+ ++L P +L V DA TGQ+A+ E FH G +G+++TK++G A Sbjct: 200 LMA---QLERIKQKLQ---PGEILLVADAMTGQDAVNVAEAFHQRLGLSGVVLTKVEGDA 253 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I +P+ +GVGE ++ LEPF + I G D Sbjct: 254 RGGAALSIRAVTGVPIKLVGVGEKLDALEPFHPDRMAGRILGMGD 298 >gi|289423976|ref|ZP_06425768.1| signal recognition particle protein [Peptostreptococcus anaerobius 653-L] gi|289155612|gb|EFD04285.1| signal recognition particle protein [Peptostreptococcus anaerobius 653-L] Length = 452 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 88/273 (32%), Positives = 145/273 (53%), Gaps = 12/273 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKP 102 E++ L+ +D+ V + ++ + + +DV Q V+ V+E + ++ + Sbjct: 34 EVKMALLEADVNFKVVKDFIKVVQERCIGEDVMKSLTPGQMVVKIVNEELTALMGDVQSK 93 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 ++ S P VI++VG+ G GKTT GKL+ + G +L AGD +R AAI QL++ Sbjct: 94 ISFS-SKSPTVIMMVGLQGAGKTTTSGKLAGYLKGQGKNPLLVAGDVYRPAAIKQLQVVG 152 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 ++ + +A A + A K D++IIDTAGRLH + +LM + K I+ + Sbjct: 153 EKLDIEVFTLGDKVSPVDIAKAALEHANKNKNDLVIIDTAGRLHVDEVLMQEL-KDIKSV 211 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 R P +L V+DA TGQ+A+ E F G G+++TKMDG RGG + I Sbjct: 212 AR-----PQEILLVVDAMTGQDAVNVAESFDTALGIDGVVLTKMDGDTRGGAALSIRAVT 266 Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 K P+ F+G+GE ++++EPF ++ I G D Sbjct: 267 KKPIKFVGMGEKLDNIEPFYPDRMASRILGMGD 299 >gi|261247869|emb|CBG25698.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 453 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 100/306 (32%), Positives = 162/306 (52%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V+E L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +V+ Q + V SEL+ M ++ N + P V+L+ G+ G GKTT +GK Sbjct: 62 HEVNKSLTPGQEFVKIVRSELVAAM-GEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVL++DTAGRLH + +M I ++ +K P L V+DA TGQ+A Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+++TK+DG ARGG + I P+ FLGVGE + LEPF ++ Sbjct: 234 KAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|56414642|ref|YP_151717.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363569|ref|YP_002143206.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128899|gb|AAV78405.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095046|emb|CAR60592.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 453 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 100/306 (32%), Positives = 162/306 (52%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V+E L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKKKAVG 61 Query: 77 KDVSV-----QRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +V+ Q + V SEL+ M ++ N + P V+L+ G+ G GKTT +GK Sbjct: 62 HEVNKSLTPGQEFVKIVRSELVAAM-GEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVL++DTAGRLH + +M I ++ +K P L V+DA TGQ+A Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+++TK+DG ARGG + I P+ FLGVGE + LEPF ++ Sbjct: 234 KAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|186683137|ref|YP_001866333.1| signal recognition particle protein [Nostoc punctiforme PCC 73102] gi|186465589|gb|ACC81390.1| signal recognition particle protein [Nostoc punctiforme PCC 73102] Length = 488 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 93/288 (32%), Positives = 149/288 (51%), Gaps = 15/288 (5%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELI 92 D IS + D +RE + L+ +D+ + V + + E+ K + A+ V+ R +++ Sbjct: 20 DKISQSNIQDALRE-VRRALLEADVNLQVVKDFISEVEAKAQGAEVVTGVRPDQQFIKIV 78 Query: 93 HKMLMPLSKPFN---WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 H L+ + N + +P ++L+ G+ G GKTT KL+ + +L A D Sbjct: 79 HDELVEVMGEENVPIAEAQEKPTIVLMAGLQGTGKTTATAKLALHLRKLDRSCLLVATDV 138 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 +R AAIDQL + D E+GSDA +A + ++A+A+ V+ +IIDTAGRL Sbjct: 139 YRPAAIDQLLTLGKQI--DVPVFELGSDADPVEIARQGVERARAEGVNTVIIDTAGRLQI 196 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + +MA + ++ ++ PH L V+DA TGQ A FH G TG I+TKMD Sbjct: 197 DEDMMAELARIKATVQ------PHETLLVVDAMTGQEAANLTRTFHEQIGITGAILTKMD 250 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G +RGG + + P+ F+GVGE + L+PF ++ I G D Sbjct: 251 GDSRGGAALSVRKISGAPIKFVGVGEKVEALQPFYPDRMASRILGMGD 298 >gi|205353714|ref|YP_002227515.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273495|emb|CAR38472.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628820|gb|EGE35163.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 453 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 100/306 (32%), Positives = 162/306 (52%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V+E L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +V+ Q + V SEL+ M ++ N + P V+L+ G+ G GKTT +GK Sbjct: 62 HEVNKSLTPGQEFVKIVRSELVAAM-GEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVL++DTAGRLH + +M I ++ +K P L V+DA TGQ+A Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+++TK+DG ARGG + I P+ FLGVGE + LEPF ++ Sbjct: 234 KAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|16761530|ref|NP_457147.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765992|ref|NP_461607.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143001|ref|NP_806343.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62181248|ref|YP_217665.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615610|ref|YP_001589575.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553522|ref|ZP_02347271.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992457|ref|ZP_02573555.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234200|ref|ZP_02659258.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239447|ref|ZP_02664505.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244700|ref|ZP_02669632.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262150|ref|ZP_02684123.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464150|ref|ZP_02698067.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823045|ref|ZP_02835045.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443897|ref|YP_002041940.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194447619|ref|YP_002046682.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470549|ref|ZP_03076533.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736625|ref|YP_002115688.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247718|ref|YP_002147614.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263594|ref|ZP_03163668.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198243111|ref|YP_002216687.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388229|ref|ZP_03214841.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929456|ref|ZP_03220530.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207858025|ref|YP_002244676.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213161442|ref|ZP_03347152.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424862|ref|ZP_03357612.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213622617|ref|ZP_03375400.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647495|ref|ZP_03377548.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824175|ref|ZP_06543770.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25294415|pir||AI0833 signal recognition particle protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421223|gb|AAL21566.1| 4.5S-RNP protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503831|emb|CAD05856.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29138634|gb|AAO70203.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62128881|gb|AAX66584.1| 45S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364974|gb|ABX68742.1| hypothetical protein SPAB_03391 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402560|gb|ACF62782.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194405923|gb|ACF66142.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456913|gb|EDX45752.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712127|gb|ACF91348.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633364|gb|EDX51778.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197211421|gb|ACH48818.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241849|gb|EDY24469.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197287864|gb|EDY27252.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937627|gb|ACH74960.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605327|gb|EDZ03872.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321175|gb|EDZ06375.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205322062|gb|EDZ09901.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329303|gb|EDZ16067.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331826|gb|EDZ18590.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336482|gb|EDZ23246.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340654|gb|EDZ27418.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349192|gb|EDZ35823.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709828|emb|CAR34180.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|267994820|gb|ACY89705.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159237|emb|CBW18752.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913700|dbj|BAJ37674.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087155|emb|CBY96922.1| Signal recognition 54 kDa protein SRP54 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223469|gb|EFX48534.1| Signal recognition particle, subunit Ffh SRP54 [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614475|gb|EFY11406.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621460|gb|EFY18313.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624321|gb|EFY21154.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629380|gb|EFY26158.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633620|gb|EFY30362.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638337|gb|EFY35035.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639775|gb|EFY36458.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647363|gb|EFY43859.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650467|gb|EFY46877.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656040|gb|EFY52340.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661434|gb|EFY57659.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662634|gb|EFY58842.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667007|gb|EFY63182.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671376|gb|EFY67499.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677617|gb|EFY73680.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681557|gb|EFY77587.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683957|gb|EFY79967.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715734|gb|EFZ07305.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131021|gb|ADX18451.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195526|gb|EFZ80704.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197899|gb|EFZ83022.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203077|gb|EFZ88109.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205318|gb|EFZ90293.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210532|gb|EFZ95416.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218187|gb|EGA02899.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221547|gb|EGA05960.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223767|gb|EGA08072.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230950|gb|EGA15068.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234698|gb|EGA18784.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238737|gb|EGA22787.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241437|gb|EGA25468.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246866|gb|EGA30833.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253265|gb|EGA37095.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257061|gb|EGA40770.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260466|gb|EGA44077.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264477|gb|EGA47983.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269612|gb|EGA53065.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624443|gb|EGE30788.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332989601|gb|AEF08584.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 453 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 100/306 (32%), Positives = 162/306 (52%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V+E L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +V+ Q + V SEL+ M ++ N + P V+L+ G+ G GKTT +GK Sbjct: 62 HEVNKSLTPGQEFVKIVRSELVAAM-GEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVL++DTAGRLH + +M I ++ +K P L V+DA TGQ+A Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+++TK+DG ARGG + I P+ FLGVGE + LEPF ++ Sbjct: 234 KAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|18314019|ref|NP_560686.1| signal recognition particle [Pyrobaculum aerophilum str. IM2] gi|28380154|sp|Q8ZT95|SRP54_PYRAE RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|18161596|gb|AAL64868.1| signal recognition particle (srp54 family), putative [Pyrobaculum aerophilum str. IM2] Length = 433 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 86/232 (37%), Positives = 125/232 (53%), Gaps = 12/232 (5%) Query: 84 VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143 VLY+ EL+ L+ +P + + +P+++L++GV G GKTT KL+K ++ G KV Sbjct: 76 VLYE--ELVK--LLGGEQPAEFKPTKKPYIVLLLGVEGSGKTTTAAKLAKYLAKRGYKVG 131 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 L DT R AA DQL+ A++ F G DA +A + K +DV+I+DTAG Sbjct: 132 LVETDTIRPAAFDQLRQLAEKIGVPFYGERDGKDAVEIAKRGVQNF--KNMDVIIVDTAG 189 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 R N L+ K +R + D +P V+ V+DAT G+ A Q E F +I+ Sbjct: 190 RHRNEEALL----KEVRAI--YDAVSPDEVVLVIDATVGKMAAAQAEAFMKYLPIHSVII 243 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TKMD TARGGG + V V F+GVGE +++ E F + F A + G D Sbjct: 244 TKMDSTARGGGALAAVAKTGAKVKFIGVGEDVDEFEQFSPRKFVARVLGMGD 295 >gi|18978103|ref|NP_579460.1| signal recognition particle protein Srp54 [Pyrococcus furiosus DSM 3638] gi|23822176|sp|Q8U070|SRP54_PYRFU RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|211939182|pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling The Ribonucleic Core Of The Signal Recognition Particle From The Archaeon Pyrococcus Furiosus. gi|211939183|pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling The Ribonucleic Core Of The Signal Recognition Particle From The Archaeon Pyrococcus Furiosus. gi|18893898|gb|AAL81855.1| signal recognition particle protein srp54 [Pyrococcus furiosus DSM 3638] Length = 443 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/273 (31%), Positives = 142/273 (52%), Gaps = 13/273 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIVEEL----LTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKP 102 +++ LI++D+ V + ++ E+ L ++ +S + ++ V E + K L +KP Sbjct: 34 DIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGTEAKP 93 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 + +P ++L+VG+ G GKTT + KL++ G KV + DT+R A QL+ Sbjct: 94 I--EIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLL 151 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 DR + + DA LA E ++K VD++I+DTAGR + L+ + ++ V+ Sbjct: 152 DRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVI 211 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 PH V+ V+D T GQ A Q F +I+TK+DG+A+GGG + V Sbjct: 212 H------PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAAT 265 Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE I+D+EPF F + + G D Sbjct: 266 GAPIKFIGTGEKIDDIEPFDPPRFVSRLLGLGD 298 >gi|298710297|emb|CBJ31918.1| PFtsY, plastid signal recognition particle receptor [Ectocarpus siliculosus] Length = 522 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 87/213 (40%), Positives = 128/213 (60%), Gaps = 9/213 (4%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+ +G NG+GKTT +GK++ ++ D G KV+LAA DTFR+AA++QL WA+R+ AD Sbjct: 249 PSVLFFMGANGMGKTTTVGKVASRLREDGGQKVLLAAADTFRAAAVEQLNEWAERSGADI 308 Query: 170 VCS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V + ++ A ++A ++ DVLI+DT+GRL NN L + M + L P Sbjct: 309 VVPLDKDERPPSVVARAAEKAVSEGYDVLIVDTSGRLSNNYSLNEELKDMKKALSDRIPG 368 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 APH L V+DA+ G+NA+ Q + G + L++TK+DGTARGG ++ IV +PV Sbjct: 369 APHDTLLVVDASVGRNAVDQARTWKQEVGISALVVTKLDGTARGGFVVSIVSDLGVPVKL 428 Query: 289 LGVGEGINDLEPFVAKDFSAV--ITGCLDYGEE 319 +GVGE + DL +DF V + L Y E Sbjct: 429 IGVGESLYDL-----RDFEPVLFVDSLLGYSPE 456 >gi|213416644|ref|ZP_03349788.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 341 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 124/206 (60%), Gaps = 2/206 (0%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 123 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 182 Query: 73 KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K + LY + + + ++L + +P N + P VIL+VGVNGVGKTT IGKL Sbjct: 183 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 241 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ ++A + A+A Sbjct: 242 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 301 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGK 217 + VDVLI DTAGRL N S LM + K Sbjct: 302 RNVDVLIADTAGRLQNKSHLMEELKK 327 >gi|302558152|ref|ZP_07310494.1| signal recognition particle FtsY [Streptomyces griseoflavus Tu4000] gi|302475770|gb|EFL38863.1| signal recognition particle FtsY [Streptomyces griseoflavus Tu4000] Length = 407 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 113/303 (37%), Positives = 172/303 (56%), Gaps = 11/303 (3%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L + + L +G+ ++S LD+ EE+ED L+ +D+GV Q++V+ L R Sbjct: 109 RLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVQPTQELVDRL---RE 165 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV------ILVVGVNGVGKTTVIG 129 V R ++ L+ + L+ L P H + ++VVGVNG GKTT G Sbjct: 166 RVKVLGTRTPAELRVLLREELITLVGPEMDRTVHTENAAGGPGVVMVVGVNGTGKTTTTG 225 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL++ + G V+L A DTFR+AA DQL+ W +R A V D A++A++A K+ Sbjct: 226 KLARVLVADGNTVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEAGDPASVAFDAVKEG 285 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + D ++IDTAGRLH + LM +GK+ RV+++ P VL VLDATTGQN L Q Sbjct: 286 KEMAADAVLIDTAGRLHTKTGLMDELGKVKRVVEKQAPL--DEVLLVLDATTGQNGLVQA 343 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 +F V TG+++TK+DGTA+GG ++ + +PV +G+GEG +DL PF + F Sbjct: 344 RVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGPDDLAPFEPEAFVDA 403 Query: 310 ITG 312 + G Sbjct: 404 LIG 406 >gi|37522208|ref|NP_925585.1| signal recognition particle protein SRP54 [Gloeobacter violaceus PCC 7421] gi|35213208|dbj|BAC90580.1| signal recognition particle protein SRP54 [Gloeobacter violaceus PCC 7421] Length = 497 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 148/289 (51%), Gaps = 15/289 (5%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--EL 91 D I+ +D+ +RE + L+ +D+ VA++ V ++ +V V V D ++ Sbjct: 20 DRITEGNIDEALRE-VRRALLEADVNFQVAKEFVADVRDDALGAEV-VSGVTPDQQFIKI 77 Query: 92 IHKMLMPLSKPFNWDFSH-----RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 +H L+ L N + RP V+L+ G+ G GKTT KL+ + G K +LAA Sbjct: 78 VHDQLVALMGEQNVPLAEPRAKGRPAVVLMAGLQGTGKTTASAKLALYLQKNGQKPLLAA 137 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 D +R AAIDQL+ + +D +A + ++A A + DVLI+DTAGRL Sbjct: 138 ADVYRPAAIDQLQTLGGQIQVPVFTLGKEADPVDIARASLERAIADRHDVLIVDTAGRLS 197 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + +MA ++ R+ +DP +L V+DA TGQ A FH G TG I+TK+ Sbjct: 198 IDDAMMA---ELERIKAAIDPE---EILLVVDAMTGQEAANLTRAFHDRLGITGAILTKL 251 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG RGG + + P+ F+GVGE + L+PF + ++ I G D Sbjct: 252 DGDTRGGAALSVRKISGQPIKFVGVGEKVEALQPFYPERMASRILGMGD 300 >gi|255026959|ref|ZP_05298945.1| SRP receptor alpha-subunit [Listeria monocytogenes FSL J2-003] Length = 156 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 70/143 (48%), Positives = 95/143 (66%) Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 RT D + GSD AA+ ++A + A+A+K DVL+ DTAGRL N LM + K+ RV+ Sbjct: 1 RTGVDVIKQAEGSDPAAVMFDAVQAAKARKADVLLCDTAGRLQNKVNLMNELEKVKRVIT 60 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 R P+APH VL VLDATTGQNA Q + F TG+I+TK+DGTA+GG +I I Sbjct: 61 REIPNAPHEVLLVLDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELD 120 Query: 284 IPVYFLGVGEGINDLEPFVAKDF 306 IPV F+G+GE ++DL+ F A ++ Sbjct: 121 IPVKFVGLGEQMDDLQAFDANEY 143 >gi|269101890|ref|ZP_06154587.1| signal recognition particle subunit Ffh SRP54 [Photobacterium damselae subsp. damselae CIP 102761] gi|268161788|gb|EEZ40284.1| signal recognition particle subunit Ffh SRP54 [Photobacterium damselae subsp. damselae CIP 102761] Length = 455 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 100/305 (32%), Positives = 156/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + ++ RL DD +++ L ++ L+ +D+ + V ++ V + + Sbjct: 2 FENLTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVNRVKERAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q + V + ++ ++ N S P VIL+ G+ G GKTT +GKL Sbjct: 62 TEVSKSLTPGQEFIKIVQAELEAVMGEQNEELNL-ASQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 SK + + K V++ + D +R AAI QL+ A DF S +A A A+ Sbjct: 121 SKVLKERNKKKVLVVSADVYRPAAIKQLETLATDLGVDFFPSTPDQKPVDIAKAAVAHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVLI+DTAGRLH +S +M I + +VL P L V+DA TGQ+A + Sbjct: 181 LKFYDVLIVDTAGRLHVDSEMMDEIKDVHQVLN------PVETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + + P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|161502225|ref|YP_001569337.1| signal recognition particle protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863572|gb|ABX20195.1| hypothetical protein SARI_00249 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 453 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 101/309 (32%), Positives = 162/309 (52%), Gaps = 25/309 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V+E L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +V+ Q + V SEL+ M ++ N + P V+L+ G+ G GKTT +GK Sbjct: 62 HEVNKSLTPGQEFVKIVRSELVAAM-GEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFSSDVGQKPVDIVNAALKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246 + K DVL++DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TG+++TK+DG ARGG + I P+ FLGVGE + LEPF Sbjct: 231 NTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRI 290 Query: 307 SAVITGCLD 315 ++ I G D Sbjct: 291 ASRILGMGD 299 >gi|296420065|ref|XP_002839601.1| hypothetical protein [Tuber melanosporum Mel28] gi|295635784|emb|CAZ83792.1| unnamed protein product [Tuber melanosporum] Length = 546 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 153/301 (50%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ ++D+ S +D DG+ +E+ LI +D+ V + + + + L Sbjct: 9 RITSAVSDLARSNVVDEKVFDGMLKEICSALIEADVNVKLVSNLRKSIKHTVNFKELNPN 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D EL+ K++ P S+PF R +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--ELV-KLVDPHSEPFKPK-KGRSNVIMFVGLQGSGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G K L DTFR+ A DQLK A + + S +D ++ E ++ + ++ Sbjct: 125 YQARGFKACLVCADTFRAGAFDQLKQNATKAKIPYYGSYTETDPVKVSREGVEKFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D++I+DT+GR L A +M+++ + + P + VLDA+ GQ A Q + F Sbjct: 185 DIIIVDTSGRHQQEKELFA---EMVQIQQAV---TPDQTIMVLDASIGQAAEAQSKAFKE 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V + P+ F+G GE + DLE F + F + + G Sbjct: 239 SANFGAIIITKTDGHAAGGGAISAVAATRTPIMFIGTGEHMLDLERFAPQAFVSKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|260886927|ref|ZP_05898190.1| signal recognition particle protein [Selenomonas sputigena ATCC 35185] gi|330839284|ref|YP_004413864.1| signal recognition particle protein [Selenomonas sputigena ATCC 35185] gi|260862989|gb|EEX77489.1| signal recognition particle protein [Selenomonas sputigena ATCC 35185] gi|329747048|gb|AEC00405.1| signal recognition particle protein [Selenomonas sputigena ATCC 35185] Length = 456 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 93/304 (30%), Positives = 156/304 (51%), Gaps = 16/304 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L++ + +L +D V E + ++ L+ +D+ V + ++++ + Sbjct: 3 FESLADRLQQTFKKLRGHGKLTEDDVNEAMREVRMALLEADVNFKVVKDFIKKVKERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V E + +++ N S P VI++ G+ G GKTT GKL Sbjct: 63 QDVLDTLTPAQVVIKIVDEELTELMGGTQSRLNIS-SVPPTVIMMAGLQGAGKTTSAGKL 121 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + G K +L A D +R AA+ QL++ ++ G+DA +A + A++ Sbjct: 122 GLSLKKQGKKPLLVAADIYRPAAVKQLQVLGEQLGIPVFSMPQGTDAVTIARSSIDHARS 181 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 DV+IIDTAGRLH + LM + + +K PH +L V+DA TGQ+A+ E Sbjct: 182 HINDVVIIDTAGRLHIDEKLMQELKDIKADVK------PHEILLVVDAMTGQDAVNVAES 235 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G G+++TK+DG ARGG + + P+ F+G+GE + LEPF ++ I Sbjct: 236 FNEGLGIDGVVLTKLDGDARGGAALSVKAVTGCPIKFVGMGEKLEALEPFHPDRMASRIL 295 Query: 312 GCLD 315 G D Sbjct: 296 GMGD 299 >gi|330980008|gb|EGH78274.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 369 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 71/182 (39%), Positives = 113/182 (62%), Gaps = 2/182 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L +G + TS + EG+ + + + +DD + EE+E L+ +D+GV I++ L Sbjct: 188 FFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIKSLT 247 Query: 72 TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K K ++ + LY + + ML P+ +P HRP VILVVGVNG GKTT IGK Sbjct: 248 QKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKSEHRPFVILVVGVNGAGKTTTIGK 307 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + A+ Sbjct: 308 LAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQAAK 367 Query: 191 AK 192 A+ Sbjct: 368 AR 369 >gi|165977179|ref|YP_001652772.1| signal recognition particle GTPase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165877280|gb|ABY70328.1| signal recognition particle GTPase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 463 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 97/305 (31%), Positives = 157/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + +I RL +D +++ L ++ L+ +D+ + V ++ + ++ + Sbjct: 2 FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERALG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q L V + + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 TEVNKSLTPGQEFLKIVQSELEIAMGEANEELNL-ATQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KV++ + D +R AAI QL+ A+ DF +E +A A K A+ Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETTQKPVEIAELALKYAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DVLI+DTAGRLH + +M I ++ RVL P L +DA TGQ+A + Sbjct: 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHRVLN------PIETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+ K+DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNEALPLTGVILAKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|312134783|ref|YP_004002121.1| signal recognition particle protein [Caldicellulosiruptor owensensis OL] gi|311774834|gb|ADQ04321.1| signal recognition particle protein [Caldicellulosiruptor owensensis OL] Length = 443 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 93/307 (30%), Positives = 157/307 (51%), Gaps = 22/307 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F+S S KL++ + +L + ++E ++++ L+ +D+ V + + + K Sbjct: 2 FSSLSEKLQDVFKKLRGKGKLTEKDIKEAMKEVKLALLEADVNYKVVKDFINNVTQKAVG 61 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH---VILVVGVNGVGKTTVI 128 ++V Q+V+ ++++ ++ L + + P + ++VG+ G GKTT Sbjct: 62 EEVLESLTPAQQVI----KIVYDEMVNLLGGSDAKLTFSPSGFSIYMMVGLQGSGKTTTA 117 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ + G +L A D +R AAI QL++ A + DA +A + + Sbjct: 118 GKLAGLLKKQGKNPLLVACDIYRPAAIKQLEVVAQKVGVKCYADYTSQDAVKIAKDGIEF 177 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A++ + DV+IIDTAGRLH N LM + + +K P +L V+DA TGQ+A+ Sbjct: 178 AKSNRSDVVIIDTAGRLHINQELMDELKNIKNAVK------PTEILLVVDAMTGQDAVNV 231 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 E F+A G G+IMTK+DG RGG + + P+ F GVGE + DLEPF ++ Sbjct: 232 AEAFNAQLGIDGIIMTKLDGDTRGGAALSVKAITGKPIKFAGVGEKMEDLEPFYPDRMAS 291 Query: 309 VITGCLD 315 I G D Sbjct: 292 RILGMGD 298 >gi|254492590|ref|ZP_05105761.1| signal recognition particle protein [Methylophaga thiooxidans DMS010] gi|224462111|gb|EEF78389.1| signal recognition particle protein [Methylophaga thiooxydans DMS010] Length = 455 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 94/275 (34%), Positives = 148/275 (53%), Gaps = 22/275 (8%) Query: 39 RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 R +D V+E L ++ L+ +D+ + V + V+ + + +DV Q ++ V++ Sbjct: 21 RITEDNVKETLREVRMALLEADVALPVVKAFVDRVKERAMGQDVLRSLTPGQALVKVVND 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149 + ++ ++ N + P VIL+ G+ G GKTT + KLS+ + + K VM+A+ D Sbjct: 81 ELVAVMGEANEGLNLNM-QPPAVILMAGLQGAGKTTSVAKLSRWLKERDRKSVMVASTDV 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAIDQL+ AD A F S+ + +A A +QA+ VDV+IIDTAGRLH + Sbjct: 140 YRPAAIDQLQTLADEVDAKFFPSQSDQNPVDIAKAAIEQAKRDYVDVVIIDTAGRLHIDD 199 Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 +M+ I ++ HA P L +D+ TGQ+A + F+ TG+I+TK Sbjct: 200 DMMSEIKQI---------HAAINPIETLFTVDSMTGQDAANTAKAFNEALPLTGVILTKT 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 DG ARGG + I P+ F+GVGE LEPF Sbjct: 251 DGDARGGAALSIRHITGKPIKFMGVGEKTEALEPF 285 >gi|121997247|ref|YP_001002034.1| signal recognition particle protein [Halorhodospira halophila SL1] gi|121588652|gb|ABM61232.1| signal recognition particle subunit FFH/SRP54 (srp54) [Halorhodospira halophila SL1] Length = 468 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 91/288 (31%), Positives = 152/288 (52%), Gaps = 18/288 (6%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-------V 88 I+ + + VRE + L+ +D+ + V + EE+ K+ A+ V + L V Sbjct: 22 ITDENIQETVRE-VRKALLEADVALPVVRSFTEEV--KKRAEGAEVAKSLTPGQAFIKIV 78 Query: 89 SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAG 147 + + +++ ++P N + P V+LV G+ G GKTT IGKL++ + + KV++ + Sbjct: 79 QDELVRVMGAEAEPLNLNVQP-PAVVLVAGLQGSGKTTSIGKLARYLREREKKKVLVVSC 137 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 D +R AAIDQL+ A + DF S+ G +A +A A+ DVL++DTAGRL Sbjct: 138 DVYRPAAIDQLETLAGQVEVDFFPSKSGDKPERIAKDAVDHAKRHYYDVLLVDTAGRLTI 197 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + +M + ++ + + P L V+DA TGQ+A + + F TG+++TK D Sbjct: 198 DEAMMDEVKRLHKTV------TPAETLFVVDAMTGQDAAKTAQAFGEALPLTGVVLTKTD 251 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G ARGG + + P+ FLG+GE + LEPF + ++ I G D Sbjct: 252 GDARGGAALSVRHVTGAPIKFLGIGEKTDALEPFHPERVASRILGKGD 299 >gi|320583360|gb|EFW97575.1| Signal recognition particle protein [Pichia angusta DL-1] Length = 530 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 89/281 (31%), Positives = 144/281 (51%), Gaps = 18/281 (6%) Query: 43 DGVREELEDLLIRSDIGVAVA-------QKIVEELLTKRYAKDVSVQRVLYD-VSELIHK 94 DG+ +E+ + LI +D+ V + + +E+ K +Q+ ++D + +L+ Sbjct: 29 DGLLKEISNALIEADVNVKLVLNLRKKLKSTIEQEEKPGVNKKKLIQKAVFDELCDLVDC 88 Query: 95 MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 L KP + +VI+ VG+ G GKTT KL+ G KV + DTFR+ A Sbjct: 89 KETELYKPK----KKKTNVIMFVGLQGAGKTTTCTKLAVYYQRRGFKVGMVCADTFRAGA 144 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 DQLK A + + S +D +A + ++ + +K +++I+DT+GR S L A Sbjct: 145 FDQLKQNATKAKIPYYGSYTEADPVKVASDGVEKFKKEKFEIIIVDTSGRHRQESELFA- 203 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 +MI++ + + P+ + VLDA+ GQ A Q F + +I+TKMDG A+GGG Sbjct: 204 --EMIQIGEAVQPN---QTIMVLDASIGQAAESQSRAFKESSNFGAIILTKMDGHAKGGG 258 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I V P+ F+G GE INDLE F + F + + G D Sbjct: 259 AISAVAATHTPIAFIGTGEHINDLESFTPRQFVSKLLGIGD 299 >gi|320167917|gb|EFW44816.1| signal recognition particle containing protein [Capsaspora owczarzaki ATCC 30864] Length = 512 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 93/285 (32%), Positives = 145/285 (50%), Gaps = 22/285 (7%) Query: 43 DGVREELEDLLIRSDIGVAVAQKI---------VEELLTKRYAKDVSVQRVLYD-VSELI 92 D + +E+ L+ +D+ V + K+ +E+ K V +Q+ +YD + L+ Sbjct: 29 DAMLKEICTALLEADVNVKLVMKLRTSVKAAVNFDEMAAGLNKKRV-IQKAVYDELCRLV 87 Query: 93 HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 + P KP +P+VI+ VG+ G GKTT KL+ G K L DTFR+ Sbjct: 88 DPGIAPY-KPVKG----KPNVIMFVGLQGSGKTTTCTKLAYYYHKKGWKTCLVCADTFRA 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 A DQLK A + F S +D +A E ++ + + +++I+DT+GR + L Sbjct: 143 GAFDQLKQNATKARIPFYGSYTEADPVLIAEEGVERFKKEGFEIIIVDTSGRHKQEASLF 202 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 +M+++ K +DP +V+ VLDAT GQ AL Q + F A +IMTK+DG A+G Sbjct: 203 E---EMLQISKAVDPQ---NVIFVLDATIGQAALGQAQAFKATVDVGSVIMTKLDGHAKG 256 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317 GG + V + P+ F+G GE + D E F K F + G D G Sbjct: 257 GGALSAVAATQSPIIFIGTGEHMEDFERFETKAFIGKLLGMGDIG 301 >gi|50292271|ref|XP_448568.1| hypothetical protein [Candida glabrata CBS 138] gi|49527880|emb|CAG61531.1| unnamed protein product [Candida glabrata] Length = 532 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 94/290 (32%), Positives = 143/290 (49%), Gaps = 31/290 (10%) Query: 43 DGVREELEDLLIRSDIGVAVAQKI--------VEELLTKRYAKDVS----VQRVLYD--- 87 DG+ + + L+ +D+ + + K+ ++ T R +V VQ+ ++D Sbjct: 30 DGMLKGISTALLEADVNIMLVSKVRNNIRSVLLDNKTTNRSMNNVQTKKLVQKTVFDELC 89 Query: 88 --VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 V HK+ P K N +I+ VG+ G GKTT KL+ S G KV L Sbjct: 90 GLVDCTDHKVFQPKKKATN--------IIMFVGLQGSGKTTSCTKLAVYYSKRGFKVGLV 141 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 DTFR+ A DQLK A + F S +D +A + + + +K DV+I+DT+GR Sbjct: 142 CADTFRAGAFDQLKQNAVKARIPFYGSYTETDPVKVAGDGIAKFKKEKFDVIIVDTSGRH 201 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 H L + ++ V+K P+ + VLDA+ GQ A +Q + F + +I+TK Sbjct: 202 HQEEELFHEMVQISNVIK------PNQTIMVLDASIGQAAEQQSKAFKESSDFGAIILTK 255 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 MDG A+GGG I V P+ F+G GE I+DLE F K F + + G D Sbjct: 256 MDGHAKGGGAISAVAATNTPIAFIGTGEHIHDLEKFSPKSFISKLLGIGD 305 >gi|229581681|ref|YP_002840080.1| signal recognition particle-docking protein FtsY [Sulfolobus islandicus Y.N.15.51] gi|228012397|gb|ACP48158.1| signal recognition particle-docking protein FtsY [Sulfolobus islandicus Y.N.15.51] Length = 208 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 70/199 (35%), Positives = 121/199 (60%), Gaps = 6/199 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S +P++I+ G+NGVGKTT I K + + GL +++A DTFR+AA +QL+I A Sbjct: 10 STKPYIIIFFGINGVGKTTTIAKFAYILKKNGLSCIISASDTFRAAAQEQLEIHARNLEI 69 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + + G D A++AY+ + A+++ +DV++IDTAGR+H ++ L+ + +++ + + Sbjct: 70 PLIKGKYGGDPASVAYDTIRAAKSRGIDVVLIDTAGRMHTDTDLVNELKRVVNITR---- 125 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ + VLD+ G +AL Q + F G +I+TK+D +GG ++ + PV Sbjct: 126 --PNLKILVLDSLGGNDALEQAKYFENNVGFDLVILTKVDADVKGGVILSLAYELNKPVG 183 Query: 288 FLGVGEGINDLEPFVAKDF 306 +LGVG+ +DL PF A+ F Sbjct: 184 YLGVGQTYDDLIPFNAEWF 202 >gi|218754674|ref|ZP_03533470.1| cell division protein ftsY [Mycobacterium tuberculosis GM 1503] gi|289763097|ref|ZP_06522475.1| signal recognition particle FtsY [Mycobacterium tuberculosis GM 1503] gi|289710603|gb|EFD74619.1| signal recognition particle FtsY [Mycobacterium tuberculosis GM 1503] Length = 395 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 94/232 (40%), Positives = 140/232 (60%), Gaps = 9/232 (3%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLMPLSKP 102 +++ED L+ +D+G A +V +L ++ + +V + VL DV LI+++ + + Sbjct: 156 QDVEDTLLVADLGPAATASVVSQLRSRLASGNVRTEADARAVLRDV--LINELQPGMDRS 213 Query: 103 FN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 + P V+LVVGVNG GKTT +GKL++ + G +V+L A DTFR+AA DQL+ W Sbjct: 214 IRALPHAGHPSVLLVVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQTW 273 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 A R A V G+D A++A++A + A DV++IDTAGRLH LM + K+ RV Sbjct: 274 AARVGAAVVRGPEGADPASVAFDAVDKGIAAGADVVLIDTAGRLHTKVGLMDELDKVKRV 333 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + R + VL VLDAT GQN L Q +F V +G ++TK+DGTA+GG Sbjct: 334 VTRR--ASVDEVLLVLDATIGQNGLAQARVFAEVVDISGAVLTKLDGTAKGG 383 >gi|329766354|ref|ZP_08257900.1| signal recognition particle-docking protein FtsY [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137123|gb|EGG41413.1| signal recognition particle-docking protein FtsY [Candidatus Nitrosoarchaeum limnia SFB1] Length = 464 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 75/205 (36%), Positives = 114/205 (55%), Gaps = 6/205 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P +IL VG+NG GKTT + K++ + A +++AA DTFR+ AI+QL+ +R + Sbjct: 104 QPFLILFVGINGTGKTTSLAKVAHMLQQAKYSLVVAAADTFRAGAIEQLREHTNRLNLKL 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V SD AA+A +A A++ K+D ++IDTAGR+ + LM I K+ +V+ Sbjct: 164 VAQNYNSDPAAVARDAVLYAKSHKMDCVLIDTAGRMQTSKNLMEQIAKITKVVN------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P + V D+ G + + Q F G I+TK D ARGG + IV PV +L Sbjct: 218 PDFKIFVGDSLAGNDTVNQAREFFEHVKFNGSILTKSDADARGGAALSIVKITSTPVLYL 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCL 314 GVG+ +DL+PF + F + G L Sbjct: 278 GVGQEYSDLKPFDKQTFLETVFGSL 302 >gi|225075354|ref|ZP_03718553.1| hypothetical protein NEIFLAOT_00359 [Neisseria flavescens NRL30031/H210] gi|224953314|gb|EEG34523.1| hypothetical protein NEIFLAOT_00359 [Neisseria flavescens NRL30031/H210] Length = 456 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 91/286 (31%), Positives = 155/286 (54%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + K ++V+ Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALV 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + + P V+L+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGKENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVLI+DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLIVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I+VL HA P L V+DA GQ+A+ + F+ TG+++TKMDG Sbjct: 203 ----NEIKVL-----HAAVNPIETLFVIDAMLGQDAVNTAQAFNEALPLTGIVLTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 254 SRGGAALSVRHVTSKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299 >gi|258544952|ref|ZP_05705186.1| signal recognition particle protein [Cardiobacterium hominis ATCC 15826] gi|258519872|gb|EEV88731.1| signal recognition particle protein [Cardiobacterium hominis ATCC 15826] Length = 453 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 94/287 (32%), Positives = 149/287 (51%), Gaps = 15/287 (5%) Query: 37 SSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDV 88 +R ++ + + L D+ LI +D+ + V ++++E + ++VS+ Q + V Sbjct: 19 QARITEENITQALRDVRMALIEADVALPVVKEVIETIKNAAIGQEVSLKLSPDQAFIKTV 78 Query: 89 SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 + +++ + N + P VIL+ G+ G GKTT KL++K+ + KV L + D Sbjct: 79 KNELVRIMGEENSALNL-ATQPPAVILMAGLQGSGKTTSSAKLARKLINEKKKVALVSAD 137 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 +R AAI+QLK A + A F+ S+ A + A+ A+ + DVLI+DTAGRLH + Sbjct: 138 VYRPAAIEQLKTLAGQVGATFIPSDASEKPADITARAYDFAKRQYFDVLIVDTAGRLHID 197 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM I + LK P L V+D TGQ+A + F+ V TG+++TK+DG Sbjct: 198 DALMDEIRTLHAQLK------PIETLFVVDGMTGQDAANTAKAFNDVLPLTGVVLTKIDG 251 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ARGG + I P+ FLGVGE LE F ++ I G D Sbjct: 252 DARGGAALSIRHITGKPIKFLGVGEKTEALEAFHPDRIASRILGMGD 298 >gi|223939677|ref|ZP_03631550.1| signal recognition particle protein [bacterium Ellin514] gi|223891634|gb|EEF58122.1| signal recognition particle protein [bacterium Ellin514] Length = 449 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 97/304 (31%), Positives = 155/304 (50%), Gaps = 17/304 (5%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F + S KL+ ++ IS + D +RE + L+ +D+ VA+ +E + TK Sbjct: 2 FDTISNKLQNAFKNLRGLGKISESNVSDSLRE-VRLALLEADVNFKVARDFIERVKTKSL 60 Query: 76 AKDVSVQRVL--YDVSELIHKMLMPLSKPFN--WDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V ++ V + ++IH L+ L N + S P I++VG++G GKTT KL Sbjct: 61 GQEV-IESVHPGQQIIKIIHDELVELLGSTNAGLNLSGNPASIMMVGLHGSGKTTSSAKL 119 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +K ++ G + +L A D +R AA+DQL+ + + +D A+A EAF A+A Sbjct: 120 AKLLTKQGRQPVLVAADVYRPAAMDQLETLGKQLGIPVFLKKGETDVLAIAREAFDFARA 179 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + LI DTAGRL + L+ + ++ ++K P +L VLDA TGQ A+ Sbjct: 180 NNRNTLIFDTAGRLQIDEPLVQELVRLRDLVK------PQEILLVLDAATGQEAVNVATH 233 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F TG I+TK+DG ARGG + + P+ G GE + D EPF + ++ I Sbjct: 234 FDQALNITGSILTKLDGDARGGAALSMKAVTGKPIKLAGTGEKLEDFEPFHPERMASRIL 293 Query: 312 GCLD 315 G D Sbjct: 294 GMGD 297 >gi|300718048|ref|YP_003742851.1| Signal recognition particle protein (Fifty-four homolog) [Erwinia billingiae Eb661] gi|299063884|emb|CAX61004.1| Signal recognition particle protein (Fifty-four homolog) [Erwinia billingiae Eb661] Length = 453 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 98/309 (31%), Positives = 162/309 (52%), Gaps = 25/309 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D +++ L ++ L+ +D+ + V + + + + Sbjct: 2 FDNLTDRLSQSLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINRVKERAVG 61 Query: 77 KDVSV-----QRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +DV+ Q + V SEL+ M + N + P V+L+ G+ G GKTT +GK Sbjct: 62 QDVNKSLTPGQEFVKIVQSELVAAMGAE-NNTLNL-AAQPPAVVLMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + KV++ + D +R AAI QL+ A++ DF S++ + A +QA Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFCPSDLSQKPVDIVKNALQQA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246 + K DVL++DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HAAINPVETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TG+I+TK+DG ARGG + I P+ F+GVGE + LEPF + Sbjct: 231 NTAKAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFMGVGEKTDALEPFYPERI 290 Query: 307 SAVITGCLD 315 ++ I G D Sbjct: 291 ASRILGMGD 299 >gi|268325095|emb|CBH38683.1| putative signal recognition particle protein [uncultured archaeon] Length = 350 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 92/259 (35%), Positives = 138/259 (53%), Gaps = 20/259 (7%) Query: 56 SDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFS-- 108 SD+ +VA++I EL+ KR +R+ V E + L+ S DF Sbjct: 82 SDVAFSVAEEIKVSVKRELVGKRRKWGADTERL---VEEAVRNALLNVFSADSELDFDAF 138 Query: 109 ----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 +P +I+ VGVNG GKTT I K++KK+ G V++AA DT+R+ A +Q++ A Sbjct: 139 VDEGKKPIIIVFVGVNGTGKTTSIAKVAKKLLGTGHSVVIAAADTYRAGAAEQIETHASN 198 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + + GSD AA+ Y+A K A A +DV++ DTAGR+H + LM + K+ RV K Sbjct: 199 LGLKVIKHQYGSDPAAVVYDANKYASANGIDVVLADTAGRMHTSINLMEQLKKICRVTK- 257 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P VL V +A G +A+ + + F+ G I+TK+D A+GG I I + Sbjct: 258 -----PDMVLFVDEAVAGNDAVERAKKFNEDIGIDAAILTKVDVDAKGGTAISIAHSTSK 312 Query: 285 PVYFLGVGEGINDLEPFVA 303 P+ FLG G+ +DL F A Sbjct: 313 PILFLGKGQDYDDLVEFDA 331 >gi|332297636|ref|YP_004439558.1| signal recognition particle-docking protein FtsY [Treponema brennaborense DSM 12168] gi|332180739|gb|AEE16427.1| signal recognition particle-docking protein FtsY [Treponema brennaborense DSM 12168] Length = 292 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 100/263 (38%), Positives = 146/263 (55%), Gaps = 7/263 (2%) Query: 42 DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101 D+ +EL D+LI D+G IVE+L +++ +D+ + ++EL +L + K Sbjct: 21 DESFFDELADILIEGDLGAKNVFDIVEKL--QKHCRDLHISEEREIIAELKRMLLEFVKK 78 Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKI 160 + + +V L++GVNGVGKTT KL+ G V+LAA DTFR+AAIDQL I Sbjct: 79 VELAPDAEKVNVYLLLGVNGVGKTTSAAKLASFYDGMGKYNVVLAAADTFRAAAIDQLLI 138 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 +R V + GSD +A+ ++A +K ++I DTAGRLHN L+ + K+ R Sbjct: 139 HGERLGIRVVAHQHGSDPSAVVFDAADAVASKGGGLVIADTAGRLHNKENLVRELQKIDR 198 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 + + + V+D TTGQNA RQ E+FH G +I+TK D TA+GG I + Sbjct: 199 IASSKADAGCYKKILVVDGTTGQNAFRQAEVFHEAVGLDAVILTKYDSTAKGG--IAAAI 256 Query: 281 THK--IPVYFLGVGEGINDLEPF 301 H IPV F+ GE ND+ PF Sbjct: 257 GHDLGIPVAFVCFGESYNDIRPF 279 >gi|15594157|dbj|BAB64926.1| signal recognition particle protein 54 [Pyrococcus furiosus] Length = 443 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 85/273 (31%), Positives = 142/273 (52%), Gaps = 13/273 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIVEEL----LTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKP 102 +++ LI++D+ V + ++ E+ L ++ +S + ++ V E + K L +KP Sbjct: 34 DIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGTEAKP 93 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 + +P ++L+VG+ G GKTT + KL++ G KV + DT+R A QL+ Sbjct: 94 I--EIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQVL 151 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 DR + + DA LA E ++K VD++I+DTAGR + L+ + ++ V+ Sbjct: 152 DRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVI 211 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 PH V+ V+D T GQ A Q F +I+TK+DG+A+GGG + V Sbjct: 212 H------PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAAT 265 Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE I+D+EPF F + + G D Sbjct: 266 GAPIKFIGTGEKIDDIEPFDPPRFVSRLLGLGD 298 >gi|296133550|ref|YP_003640797.1| signal recognition particle protein [Thermincola sp. JR] gi|296032128|gb|ADG82896.1| signal recognition particle protein [Thermincola potens JR] Length = 450 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 117/208 (56%), Gaps = 6/208 (2%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P V+++VG+ G GKTT +GKL ++ G + +L A D +R AAI QLK+ ++ + Sbjct: 98 SKPPTVVMLVGLQGAGKTTTVGKLGNQLRKQGRRPLLVAADVYRPAAIKQLKVLGEQLNI 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 ++ +A A + A++ D+++IDTAGRLH N LM + + +K Sbjct: 158 PVFSLGDKTNPVDIAKAAVEHAKSYGNDMVLIDTAGRLHINEELMEELKNIKESVK---- 213 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 PH +L V+DATTGQ+A+ + F G G+I+TK+DG RGG + + P+ Sbjct: 214 --PHEILFVMDATTGQDAVNVAKTFDEQLGIDGVIITKLDGDTRGGAALSVKAVTGKPIK 271 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ LEPF ++ I G D Sbjct: 272 FVGMGEKLDALEPFFPDRMASRILGMGD 299 >gi|227486503|ref|ZP_03916819.1| signal recognition particle protein Ffh [Anaerococcus lactolyticus ATCC 51172] gi|227235506|gb|EEI85521.1| signal recognition particle protein Ffh [Anaerococcus lactolyticus ATCC 51172] Length = 446 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 100/305 (32%), Positives = 155/305 (50%), Gaps = 19/305 (6%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L+E + + +L+ D E+ L+ +D+ V + V+ + K + Sbjct: 3 FESLSDRLQEALGKLTGKGKLNEKDIDNAMREIRLSLLEADVNYKVVKDFVKTI--KERS 60 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V L V +++++ L L N + R PH++++VG+ G GKTT GK Sbjct: 61 LGTEVMNSLSPGQMVVKIVNEELTSLMGKENSKLALRGGTPHMVMMVGLQGSGKTTHSGK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L K + MLAA D +R AAI+QLK+ + + FV + D +A EA A+ Sbjct: 121 LVKMLQKENRNPMLAALDIYRPAAIEQLKVVGKQANT-FVFEKGKEDPVKIAKEAKDYAR 179 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 D +I+DTAGRL ++ LM + + V+K P +L V+DA TGQ A+ + Sbjct: 180 INNYDTVILDTAGRLQIDTDLMDELKAIKEVVK------PDEILLVVDAMTGQEAVNVAK 233 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F TG+I+TK+DG ARGG + I P+ F+GVGE ++DLEPF ++ I Sbjct: 234 SFDDYLDITGVILTKLDGDARGGAALSIRQVVGKPIKFIGVGEKLDDLEPFYPDRMASRI 293 Query: 311 TGCLD 315 G D Sbjct: 294 LGMGD 298 >gi|237729526|ref|ZP_04560007.1| signal recognition particle protein [Citrobacter sp. 30_2] gi|226908132|gb|EEH94050.1| signal recognition particle protein [Citrobacter sp. 30_2] Length = 453 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 96/305 (31%), Positives = 158/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V+E L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V + + ++ N + P V+L+ G+ G GKTT +GKL Sbjct: 62 HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A+ Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVL++DTAGRLH + +M I ++ +K P L V+DA TGQ+A + Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF ++ I Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|289806535|ref|ZP_06537164.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 447 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 96/287 (33%), Positives = 153/287 (53%), Gaps = 18/287 (6%) Query: 39 RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDV-S 89 R +D V+E L ++ L+ +D+ + V ++ + + K +V+ Q + V S Sbjct: 15 RLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRS 74 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGD 148 EL+ M ++ N + P V+L+ G+ G GKTT +GKL K + + KV++ + D Sbjct: 75 ELVAAM-GEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 132 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 +R AAI QL+ A++ DF S++G + A K+A+ K DVL++DTAGRLH + Sbjct: 133 VYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVD 192 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 +M I ++ +K P L V+DA TGQ+A + F+ TG+++TK+DG Sbjct: 193 EAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDG 246 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ARGG + I P+ FLGVGE + LEPF ++ I G D Sbjct: 247 DARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGD 293 >gi|123966680|ref|YP_001011761.1| signal recognition particle protein (SRP54) [Prochlorococcus marinus str. MIT 9515] gi|123201046|gb|ABM72654.1| signal recognition particle protein (SRP54) [Prochlorococcus marinus str. MIT 9515] Length = 492 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 95/287 (33%), Positives = 153/287 (53%), Gaps = 16/287 (5%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVS- 89 IS +DD +++ ++ L+ +D+ ++V ++ V ++ K +DV Q+ + V+ Sbjct: 22 ISENNIDDALKQ-VKKALLDADVSLSVVKEFVSDVKDKAIGEDVVRGVNPGQKFIEVVNK 80 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 ELI+ M S F + P VIL+ G+ G GKTT GKL + + KV+L A D Sbjct: 81 ELINVMGNENSPLFEKETP--PTVILMAGLQGAGKTTATGKLGLYLKEKEKKVLLVAADI 138 Query: 150 FRSAAIDQLKIWADRTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 +R AA++QLK ++ + F E S +A +A A VD LI+DTAGRL + Sbjct: 139 YRPAAVEQLKTIGNQYDLEVFSAKEKDSKPEEIAKDALIYANENNVDTLIVDTAGRLQID 198 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 ++M+ +M+R+ + +P VL V+D+ GQ A + FH G +G I+TK+DG Sbjct: 199 ELMMS---EMVRIKEVTNPD---EVLLVVDSMIGQEAADLTKSFHEKVGISGAILTKLDG 252 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + I P+ F+G GE I L+PF + ++ I G D Sbjct: 253 DSRGGAALSIRKISGKPIKFIGTGEKIEALQPFHPERMASRILGMGD 299 >gi|154151418|ref|YP_001405036.1| signal recognition particle-docking protein FtsY [Candidatus Methanoregula boonei 6A8] gi|153999970|gb|ABS56393.1| signal recognition particle-docking protein FtsY [Methanoregula boonei 6A8] Length = 344 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 90/275 (32%), Positives = 146/275 (53%), Gaps = 17/275 (6%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE----LLTKRYAKDVSVQRVLYDVSE 90 ++S + + D + ELE L+ SD+ + V ++ + L+ K SV ++ V Sbjct: 65 VVSEKDIADAL-SELEMTLLESDVALPVTDALIADIRAGLVGKHRKIGESVDSLV--VRS 121 Query: 91 LIHKMLMPLSKPFN---WDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 L +L L + F+ + SH RP IL GVNG GKTT + K+ + G V++ A Sbjct: 122 LKSALLKVLGQGFDLPAYIRSHERPVKILFTGVNGTGKTTTVAKIGAYLKKEGFSVVIGA 181 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 GDTFR+ AI+Q+ + A+R + + G+D +A+ ++ + A A K DV++ DTAGR H Sbjct: 182 GDTFRAGAIEQIGVHAERLGIKVIEHQTGADPSAVLFDTVQYAIAHKTDVVLADTAGRFH 241 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + LM+ + K+ RV+K P ++ V +A G +A+ + F G +++TK Sbjct: 242 TKANLMSQLEKIRRVMK------PDLIVYVDEAVAGNDAVVRAAEFDKTVGADAIVLTKA 295 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 D +RGG I I T P+ FLG G+ D+ PF Sbjct: 296 DMDSRGGAAISIAHTIGKPLLFLGTGQAYEDIMPF 330 >gi|326204801|ref|ZP_08194655.1| signal recognition particle protein [Clostridium papyrosolvens DSM 2782] gi|325985013|gb|EGD45855.1| signal recognition particle protein [Clostridium papyrosolvens DSM 2782] Length = 436 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 93/304 (30%), Positives = 157/304 (51%), Gaps = 16/304 (5%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F S KL+E I I +S + + D +RE ++ L+ +D+ V ++ + ++ + Sbjct: 4 FEGLSGKLQETIKKIRGQGRVSEKDVKDMMRE-IKLALLEADVNFKVVKEFISKVSERAV 62 Query: 76 AKDVSVQRVL-YDVSELIHKMLMPL--SKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKL 131 DV V +++H+ L+ L + F+ +P I ++ G+ G GKTT GKL Sbjct: 63 GSDVLESLTPGQQVVKIVHEELIELLGREQSKVTFASKPPTIFMMAGLQGAGKTTTAGKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + G +L A D +R AAI QL++ ++ + E + +A EA A+ Sbjct: 123 ANLLRKQGKNPLLVACDVYRPAAIKQLQVLGNQLNIPVFTLEDNQNPVQIAKEAVSFAEK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K+ D++IIDTAGRLH + LM + + +K PH +L V+D+ TGQ+A+ E Sbjct: 183 KQHDLVIIDTAGRLHIDEKLMDELLNIKNSVK------PHEILLVVDSMTGQDAVNVSET 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G G+++TK+DG RGG + + P+ F +GE +ND+EPF ++ I Sbjct: 237 FNKKLGIDGVVLTKLDGDTRGGAALSVKSVTGKPIKFAAMGEKLNDIEPFFPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|312898910|ref|ZP_07758298.1| signal recognition particle protein [Megasphaera micronuciformis F0359] gi|310620072|gb|EFQ03644.1| signal recognition particle protein [Megasphaera micronuciformis F0359] Length = 449 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 90/277 (32%), Positives = 144/277 (51%), Gaps = 15/277 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSK 101 +E+ L+ +D+ AV + ++ + K ++V + Q V+ V + + +L Sbjct: 33 KEMRRALLEADVNFAVTKDFIKRVREKAVGEEVFSTLNAAQTVIKIVRDELTDLLGGTQS 92 Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 S P V+++ G+ G GKTT KL+K+ G +L A D +R AAI+QL++ Sbjct: 93 RITIS-SRPPTVVMLAGLQGAGKTTTAAKLAKRFVRQGKHPLLVACDVYRPAAIEQLRVL 151 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 + + D A+A A A + DV+I+DTAGRLH + LM G+++R+ Sbjct: 152 GKELNIPVYSEDDSKDPVAIAERAVPYATSHLCDVVIVDTAGRLHIDEDLM---GELVRI 208 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 + D H PH +L V+DA TGQ+A+ E F G G+IMTK+DG ARGG + + Sbjct: 209 --KEDIH-PHEILLVVDAMTGQDAVTAAEAFDKALGIDGVIMTKLDGDARGGAALSVKAV 265 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 P+ F+GV E + LE F +++ I LD G+ Sbjct: 266 TGKPIKFIGVSEKTDGLEEFHPDRYASRI---LDLGD 299 >gi|83589815|ref|YP_429824.1| signal recognition particle subunit FFH/SRP54 (srp54) [Moorella thermoacetica ATCC 39073] gi|83572729|gb|ABC19281.1| signal recognition particle subunit FFH/SRP54 (srp54) [Moorella thermoacetica ATCC 39073] Length = 447 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 148/304 (48%), Gaps = 16/304 (5%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 FAS + KL+E + +L + E+ L+ +D+ V + V + + Sbjct: 4 FASLADKLQETFKKLRGKGKLTEADVTAAMREIRLALLEADVNFKVVKDFVNRVKERAVG 63 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V Q+V+ V E + ++ NW S P VI++ G+ G GKTT KL Sbjct: 64 QEVMQSLTPGQQVVKIVHEELTALMGGGESKINWA-SQPPTVIMLAGLQGAGKTTTAAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++ + G + +L A D +R AAI QL++ ++ GS +A A + A+ Sbjct: 123 ARLAQNQGRRPLLVAADVYRPAAIKQLQVLGEQLKVPVFSMGEGSSPVDIARAAVEHART 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +I+DTAGRLH N +MA + + ++ P +L V+DA TGQ+A++ Sbjct: 183 HGSNPVILDTAGRLHINETMMAELAAIKEAVR------PQEILLVVDAMTGQDAVQVAST 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 FH G TG+I+TK+DG RGG + I P+ F+G+GE LE F ++ I Sbjct: 237 FHQQLGLTGVILTKLDGDTRGGAALSIRAVTGCPIKFIGMGEKTEALETFHPDRLASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|253689573|ref|YP_003018763.1| signal recognition particle protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756151|gb|ACT14227.1| signal recognition particle protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 453 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 157/306 (51%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D ++E L ++ L+ +D+ + V + + + K A Sbjct: 2 FENLTDRLSRTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFINRV--KERA 59 Query: 77 KDVSVQRVLYDVSE---LIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGK 130 V + L E ++ L+ N + + P V+L+ G+ G GKTT +GK Sbjct: 60 VGHEVNKSLTPGQEFVKIVKNELVSAMGEINAELNLAAQPPAVVLMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + KV++ + D +R AAI QL+ A++ DF S++ A+ A + A Sbjct: 120 LGKFLREKQKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVQEKPLAIVERALQHA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVL++DTAGRLH + +M I ++ +K P L V+DA TGQ+A Sbjct: 180 KLKFYDVLLVDTAGRLHVDDAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+I+TK+DG ARGG + I P+ FLGVGE LEPF + ++ Sbjct: 234 KAFNEALPLTGVILTKIDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFYPERVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|15791234|ref|NP_281058.1| signal recognition particle receptor [Halobacterium sp. NRC-1] gi|169236990|ref|YP_001690190.1| signal recognition particle receptor SRalpha [Halobacterium salinarum R1] gi|10581862|gb|AAG20538.1| signal recognition particle receptor [Halobacterium sp. NRC-1] gi|167728056|emb|CAP14844.1| signal recognition particle receptor SRalpha [Halobacterium salinarum R1] Length = 373 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 93/295 (31%), Positives = 149/295 (50%), Gaps = 23/295 (7%) Query: 18 TKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77 + GF S + + G +I L+ +RE LE L+ SD+ ++V VEE+L + Sbjct: 76 SAGFVSRAASMARGRV-VIDEADLEAPLRE-LEFALLESDVEMSV----VEEILDQIRGD 129 Query: 78 DVSVQRVLYD-----VSELIHKMLMPLSKPFNWDF------SHRPHVILVVGVNGVGKTT 126 V +R + + + + + L+ + +D + +P I+ GVNGVGKTT Sbjct: 130 LVGEERKFTESTDTLIEDALREALLSVIDVGQFDLVDEIESTSKPVTIVFTGVNGVGKTT 189 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 I KL++ + G +LA GDT+R+ A Q++ A+ + E G D A+ Y+A Sbjct: 190 TIAKLARYLESEGFSSVLANGDTYRAGANQQIEEHAEALGVKCITHEQGGDPTAVVYDAV 249 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A A VDV++ DTAGRLH + LM+ + K+ RV+ P + V +A GQ+A+ Sbjct: 250 EYADANDVDVVLGDTAGRLHTSDDLMSQLEKLDRVVD------PDVTVFVDEAVAGQDAV 303 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F + G I+T D ++GG I + P+ FLG G+ DLEPF Sbjct: 304 NRAREFDEASAVDGTILTMADADSQGGAAISVSHVTGKPILFLGTGQAYEDLEPF 358 >gi|165924213|ref|ZP_02220045.1| putative Signal recognition particle protein (Fifty-four homolog) [Coxiella burnetii RSA 334] gi|165916338|gb|EDR34942.1| putative Signal recognition particle protein (Fifty-four homolog) [Coxiella burnetii RSA 334] Length = 311 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 159/289 (55%), Gaps = 22/289 (7%) Query: 39 RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87 R ++ ++ L D+ LI +D+ + V + +E + K ++V ++ +V+ D Sbjct: 21 RLTEENIQSTLHDIRSALIEADVALPVVKDFIEHVREKALGQEVIGNVRPGEALVKVVQD 80 Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAA 146 EL H + L + N + + P VI++ G+ G GKTT + KL++ + + K VM+A+ Sbjct: 81 --ELTHLLGDELVE-INLN-AQPPIVIVMAGLQGSGKTTTVAKLARWLLEIQKKSVMVAS 136 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 D +R AAI QL+ A + +A F ++ +A A KQA+ + +DVLI+DTAGRLH Sbjct: 137 ADVYRPAAIQQLETLASQINATFFPTQADQKPVEIAKAALKQAEKQFMDVLILDTAGRLH 196 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 +++LM + K I D P +L V+D+ GQ+A + F+ TG+I+TK+ Sbjct: 197 IDNVLMEEM-KAIS-----DAVTPTEILLVVDSMMGQDAANVAKSFNDTLPLTGVILTKL 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG RGG + + + + P+ F+GVGE I+ LEPF ++ I G D Sbjct: 251 DGDTRGGAALSMRMITQKPIKFVGVGEKIDALEPFHPNRMASRILGMGD 299 >gi|227115236|ref|ZP_03828892.1| signal recognition particle protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 453 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 157/306 (51%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D ++E L ++ L+ +D+ + V + + + K A Sbjct: 2 FENLTDRLSRTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFINRV--KERA 59 Query: 77 KDVSVQRVLYDVSE---LIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGK 130 V + L E ++ L+ N + + P V+L+ G+ G GKTT +GK Sbjct: 60 VGHEVNKSLTPGQEFVKIVKNELVSAMGEINAELNLAAQPPAVVLMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + KV++ + D +R AAI QL+ A++ DF S++ A+ A + A Sbjct: 120 LGKFLREKQKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVQEKPLAIVERALQHA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVL++DTAGRLH + +M I ++ +K P L V+DA TGQ+A Sbjct: 180 KLKFYDVLLVDTAGRLHVDDAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+I+TK+DG ARGG + I P+ FLGVGE LEPF + ++ Sbjct: 234 KAFNEALPLTGVILTKIDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFYPERVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|153006211|ref|YP_001380536.1| signal recognition particle protein [Anaeromyxobacter sp. Fw109-5] gi|152029784|gb|ABS27552.1| signal recognition particle protein [Anaeromyxobacter sp. Fw109-5] Length = 550 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 100/317 (31%), Positives = 161/317 (50%), Gaps = 24/317 (7%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + ++KGF + KLK G T+I + +DD +R+ + L+ +D+ V ++ V + Sbjct: 1 MLETVSKGFKAARNKLK-GRTEI-TPEVVDDALRD-IRVSLLEADVSFDVVKRFVARVRE 57 Query: 73 KRYAK----DVSVQRVLYDVS------ELIHKMLMPLSKPFNWDFSH----RPHVILVVG 118 K + V ++ + V+ ++ H L L P + H RP I++VG Sbjct: 58 KAIGEVVDTKVKTEKGVVRVTPQDHFVKICHDELEALMGPVDTSLRHGERGRPTGIMMVG 117 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 + G GKTT GK++ K+ G + +L A D +R AA+DQLK+ +R V E G Sbjct: 118 LQGSGKTTTAGKIASKLLKEGKRPLLVAADVYRPAAVDQLKVLGERLGVP-VFHEPGVSP 176 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 + AF+ A +K +V+I DTAGRL + LM + ++ R + AP ++L V D Sbjct: 177 PEMCRHAFEAAPREKANVVIYDTAGRLAVDEELMVELEEIKRHV------APENILLVAD 230 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A GQ+A++ F G I+TK+DG ARGG + I P+ FLG+GE ++ L Sbjct: 231 AMIGQDAVKTAAEFDRRLALDGFILTKLDGDARGGAALSIKEVTGKPIKFLGMGESLDRL 290 Query: 299 EPFVAKDFSAVITGCLD 315 E F + ++ I G D Sbjct: 291 EEFRPEGLASRILGFGD 307 >gi|302542219|ref|ZP_07294561.1| signal recognition particle FtsY [Streptomyces hygroscopicus ATCC 53653] gi|302459837|gb|EFL22930.1| signal recognition particle FtsY [Streptomyces himastatinicus ATCC 53653] Length = 405 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 107/291 (36%), Positives = 153/291 (52%), Gaps = 24/291 (8%) Query: 37 SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96 S LDD EE+ED L+ +D+GVA Q++VE L + L + L Sbjct: 123 SREHLDDDTWEEIEDTLLTADVGVAPTQELVERLRERVKVLGTRTPDELRGLLREELLHL 182 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGK--------------TTVIGKLSKKMSDAGLKV 142 + + H VG NG K TT GKL++ + G V Sbjct: 183 V------GTEADRTVHTEGGVGTNGEEKPGVVMVVGVNGTGKTTTTGKLARVLVADGKSV 236 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +L A DTFR+AA DQL+ W +R A V G D A++ ++A K+ A+ DV++IDTA Sbjct: 237 VLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASVGFDAVKEGIAESADVVLIDTA 296 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 GRLH + LM +GK+ RV+++ H VL VLDATTGQN L Q +F V TG+ Sbjct: 297 GRLHTKTGLMDELGKVKRVVEK---HGTVDEVLLVLDATTGQNGLVQARVFREVVDITGI 353 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 ++TK+DGTA+GG ++ + +PV +G+GEG +DL PF + F + G Sbjct: 354 VLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGADDLAPFEPEAFVDALIG 404 >gi|296127634|ref|YP_003634886.1| signal recognition particle-docking protein FtsY [Brachyspira murdochii DSM 12563] gi|296019450|gb|ADG72687.1| signal recognition particle-docking protein FtsY [Brachyspira murdochii DSM 12563] Length = 319 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 157/287 (54%), Gaps = 13/287 (4%) Query: 24 TSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---LTKRYAKDVS 80 TS K K ++ + ++ ++D LE+ LI +D GV + I+ +L + K K+ S Sbjct: 36 TSAKSKFSLSSLFNTSSINDEFFASLENTLITADAGVETTKDIISKLREAIEKENIKEPS 95 Query: 81 -VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139 ++ L ++ LI K + SK +++ +VGVNGVGKTT I KL+ + Sbjct: 96 EAKKYLREI--LISKFI---SKKIEL---KDKNILFIVGVNGVGKTTSIAKLANILKKDH 147 Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199 KV+LAA DTFR+AAI+QL+ WA+R S V + D A++ + A +A+A D++I+ Sbjct: 148 -KVILAAADTFRAAAIEQLEEWANRLSVTIVKGQQAGDPASVLFSALDKAKAANADIVIV 206 Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 DTAGR HN L+ + KM ++ + VLDA G N + Q ++F Sbjct: 207 DTAGRFHNQENLVRQLEKMKKIATERFSEFNFIPILVLDANVGHNGIEQAKVFTNALNIQ 266 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G I++K+D TA+GG I I +P+Y+ G GE ++D + F A+ F Sbjct: 267 GAIVSKLDSTAKGGVAISIAHYLSLPIYYGGFGEKVDDFKEFDAESF 313 >gi|320587877|gb|EFX00352.1| signal recognition particle protein srp54 [Grosmannia clavigera kw1407] Length = 530 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 90/301 (29%), Positives = 154/301 (51%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-- 80 ++ ++D+ + +D D + +E+ + L+ +D+ V + ++ + + KD+ Sbjct: 9 RINAAVSDLTRAPNIDEKAFDSMLKEIGNALVEADVNVKLVAQLRKSIKGTVNFKDLPPA 68 Query: 81 ------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 +Q+ ++D EL+ ++ P S+PF + +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--ELVQ-LVDPHSEPFKPK-KGKTNVIMFVGLQGAGKTTSCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G + L DTFR+ A DQLK A + + S +D A +A + ++ + ++ Sbjct: 125 YQSRGFQACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAVVARDGVEKFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D++I+DT+GR S L +MI + + + P + VLDAT GQ A Q + F Sbjct: 185 DIIIVDTSGRHRQESALFQ---EMIDIQEAV---KPDETIMVLDATIGQQAEAQAKAFKE 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A+GGG I V + P+ FLG GE + DLE F + F + G Sbjct: 239 AADFGAIIITKTDGHAKGGGAISAVAATRTPIVFLGTGEHMLDLERFAPQQFIQKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|283835680|ref|ZP_06355421.1| signal recognition particle protein [Citrobacter youngae ATCC 29220] gi|291068895|gb|EFE07004.1| signal recognition particle protein [Citrobacter youngae ATCC 29220] Length = 453 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 96/305 (31%), Positives = 158/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V+E L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V + + ++ N + P V+L+ G+ G GKTT +GKL Sbjct: 62 HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A+ Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVL++DTAGRLH + +M I ++ +K P L V+DA TGQ+A + Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF ++ I Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|283786230|ref|YP_003366095.1| signal recognition particle protein [Citrobacter rodentium ICC168] gi|282949684|emb|CBG89303.1| signal recognition particle protein [Citrobacter rodentium ICC168] Length = 453 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 97/308 (31%), Positives = 159/308 (51%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V+E L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V + + ++ N + P V+L+ G+ G GKTT +GKL Sbjct: 62 HEVNKSLTPGQEFVKIVRNELVAAMGEENQSLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A+ Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K DVL++DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG ARGG + I P+ FLGVGE + LEPF + Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|290889936|ref|ZP_06553022.1| hypothetical protein AWRIB429_0412 [Oenococcus oeni AWRIB429] gi|290480378|gb|EFD89016.1| hypothetical protein AWRIB429_0412 [Oenococcus oeni AWRIB429] Length = 156 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 66/146 (45%), Positives = 95/146 (65%) Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 WA R D V + SD A++ ++ K++ D+L +DTAGRL NN LM + KM + Sbjct: 2 WAHRDQVDVVTGKEKSDPASVVFDGVKKSIDGHYDILFVDTAGRLQNNDNLMRELEKMKK 61 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 ++ R P+AP VL VLDATTGQNAL+Q +F TGL++TK+DGTA+GG ++ I Sbjct: 62 IITRQLPNAPQEVLLVLDATTGQNALQQARLFKDSTDVTGLVLTKLDGTAKGGIVLAIRQ 121 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDF 306 +PV ++G+GE ++DLEPF A +F Sbjct: 122 ELHLPVKWVGLGEKVDDLEPFNADEF 147 >gi|209364128|ref|YP_001424962.2| signal recognition particle, subunit FFH/SRP54 [Coxiella burnetii Dugway 5J108-111] gi|207082061|gb|ABS77866.2| signal recognition particle, subunit FFH/SRP54 [Coxiella burnetii Dugway 5J108-111] Length = 467 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 159/289 (55%), Gaps = 22/289 (7%) Query: 39 RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87 R ++ ++ L D+ LI +D+ + V + +E + K ++V ++ +V+ D Sbjct: 27 RLTEENIQSTLHDIRSALIEADVALPVVKDFIEHVREKALGQEVIGNVRPGEALVKVVQD 86 Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAA 146 EL H + L + N + + P VI++ G+ G GKTT + KL++ + + K VM+A+ Sbjct: 87 --ELTHLLGDELVE-INLN-AQPPIVIVMAGLQGSGKTTTVAKLARWLLEIQKKSVMVAS 142 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 D +R AAI QL+ A + +A F ++ +A A KQA+ + +DVLI+DTAGRLH Sbjct: 143 ADVYRPAAIQQLETLASQINATFFPTQADQKPVEIAKAALKQAEKQFMDVLILDTAGRLH 202 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 +++LM + K I D P +L V+D+ GQ+A + F+ TG+I+TK+ Sbjct: 203 IDNVLMEEM-KAIS-----DAVTPTEILLVVDSMMGQDAANVAKSFNDTLPLTGVILTKL 256 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG RGG + + + + P+ F+GVGE I+ LEPF ++ I G D Sbjct: 257 DGDTRGGAALSMRMITQKPIKFVGVGEKIDALEPFHPNRMASRILGMGD 305 >gi|224088549|ref|XP_002308469.1| predicted protein [Populus trichocarpa] gi|222854445|gb|EEE91992.1| predicted protein [Populus trichocarpa] Length = 559 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 98/309 (31%), Positives = 155/309 (50%), Gaps = 23/309 (7%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----- 70 +LT G S KLK ++++ + + +R+ + L+ +D+ + V ++ V+ + Sbjct: 92 QLTSGLESAWNKLKG--EEVLTKENIAEPMRD-IRRALLEADVSLPVVRRFVQSVGDQAV 148 Query: 71 ---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126 L + D +++ D EL+ M +S+ F+ P VIL+ G+ GVGKTT Sbjct: 149 GVGLIRGVKPDQQFVKIVRD--ELVKLMGGEVSELV---FAKSGPTVILLAGLQGVGKTT 203 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 + KL+ + G ML AGD +R AAIDQL I ++ + +A + Sbjct: 204 ICAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVSVYTEGTDVKPSEIARKGL 263 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 +A+ K +DV+I+DTAGRL + +M + + RVL P VL V+DA TGQ A Sbjct: 264 AEAKKKNIDVVIVDTAGRLQIDKAMMDELKDVKRVLN------PTEVLLVVDAMTGQEAA 317 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 V F+ G TG I+TK+DG +RGG + + P+ +G GE + DLEPF Sbjct: 318 ALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEISGKPIKLVGRGERMEDLEPFYPDRM 377 Query: 307 SAVITGCLD 315 + I G D Sbjct: 378 AGRILGMGD 386 >gi|213408098|ref|XP_002174820.1| signal recognition particle protein [Schizosaccharomyces japonicus yFS275] gi|212002867|gb|EEB08527.1| signal recognition particle protein [Schizosaccharomyces japonicus yFS275] Length = 537 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 96/282 (34%), Positives = 143/282 (50%), Gaps = 20/282 (7%) Query: 43 DGVREELEDLLIRSDIGVAVAQKI---------VEELLTKRYAKDVSVQRVLYDVSELIH 93 DGV + + L+ SD+ V + Q++ V+ L K V VQ+ ++D EL Sbjct: 29 DGVLKSICKALLESDVNVRLVQELRGNIKKRINVKSLPAGPNGKRV-VQKAVFD--ELCD 85 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 +L P ++ F RP+VI+ VG+ G GKTT KL+ G K L A DTFR+ Sbjct: 86 -LLDPKTQAFTPK-KGRPNVIMFVGLQGSGKTTTCTKLALYYQRRGFKSCLVAADTFRAG 143 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A DQLK A + F S +D +A + + ++ D++I+DT+GR L Sbjct: 144 AFDQLKQNALKARIPFYGSYTEADPVVVAQTGVDKFKKERFDIIIVDTSGRHQQEKEL-- 201 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 +MI + + + P+ + VLDA+ GQ A Q F A +I+TK+DG A+GG Sbjct: 202 -FNEMIEISEAV---RPNQTIMVLDASIGQAAESQSRAFKESANFGAVIVTKLDGHAKGG 257 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + V K P+ F+G GE INDLE F + F + + G D Sbjct: 258 GALSAVAATKTPIIFIGTGEHINDLERFSPRSFISKLLGMGD 299 >gi|212213064|ref|YP_002304000.1| signal recognition particle, subunit ffh/srp54 [Coxiella burnetii CbuG_Q212] gi|212011474|gb|ACJ18855.1| signal recognition particle, subunit ffh/srp54 [Coxiella burnetii CbuG_Q212] Length = 461 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 159/289 (55%), Gaps = 22/289 (7%) Query: 39 RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87 R ++ ++ L D+ LI +D+ + V + +E + K ++V ++ +V+ D Sbjct: 21 RLTEENIQSTLHDIRSALIEADVALPVVKDFIEHVREKALGQEVIGNVRPGEALVKVVQD 80 Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAA 146 EL H + L + N + + P VI++ G+ G GKTT + KL++ + + K VM+A+ Sbjct: 81 --ELTHLLGDELVE-INLN-AQPPIVIVMAGLQGSGKTTTVAKLARWLLEIQKKSVMVAS 136 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 D +R AAI QL+ A + +A F ++ +A A KQA+ + +DVLI+DTAGRLH Sbjct: 137 ADVYRPAAIQQLETLASQINATFFPTQADQKPVEIAKAALKQAEKQFMDVLILDTAGRLH 196 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 +++LM + K I D P +L V+D+ GQ+A + F+ TG+I+TK+ Sbjct: 197 IDNVLMEEM-KAIS-----DAVTPTEILLVVDSMMGQDAANVAKSFNDTLPLTGVILTKL 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG RGG + + + + P+ F+GVGE I+ LEPF ++ I G D Sbjct: 251 DGDTRGGAALSMRMITQKPIKFVGVGEKIDALEPFHPNRMASRILGMGD 299 >gi|153209914|ref|ZP_01947538.1| signal recognition particle protein [Coxiella burnetii 'MSU Goat Q177'] gi|212218940|ref|YP_002305727.1| signal recognition particle, subunit FFH/SRP54 [Coxiella burnetii CbuK_Q154] gi|120575215|gb|EAX31839.1| signal recognition particle protein [Coxiella burnetii 'MSU Goat Q177'] gi|212013202|gb|ACJ20582.1| signal recognition particle, subunit FFH/SRP54 [Coxiella burnetii CbuK_Q154] Length = 460 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 159/289 (55%), Gaps = 22/289 (7%) Query: 39 RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87 R ++ ++ L D+ LI +D+ + V + +E + K ++V ++ +V+ D Sbjct: 21 RLTEENIQSTLHDIRSALIEADVALPVVKDFIEHVREKALGQEVIGNVRPGEALVKVVQD 80 Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAA 146 EL H + L + N + + P VI++ G+ G GKTT + KL++ + + K VM+A+ Sbjct: 81 --ELTHLLGDELVE-INLN-AQPPIVIVMAGLQGSGKTTTVAKLARWLLEIQKKSVMVAS 136 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 D +R AAI QL+ A + +A F ++ +A A KQA+ + +DVLI+DTAGRLH Sbjct: 137 ADVYRPAAIQQLETLASQINATFFPTQADQKPVEIAKAALKQAEKQFMDVLILDTAGRLH 196 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 +++LM + K I D P +L V+D+ GQ+A + F+ TG+I+TK+ Sbjct: 197 IDNVLMEEM-KAIS-----DAVTPTEILLVVDSMMGQDAANVAKSFNDTLPLTGVILTKL 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG RGG + + + + P+ F+GVGE I+ LEPF ++ I G D Sbjct: 251 DGDTRGGAALSMRMITQKPIKFVGVGEKIDALEPFHPNRMASRILGMGD 299 >gi|297617092|ref|YP_003702251.1| signal recognition particle protein [Syntrophothermus lipocalidus DSM 12680] gi|297144929|gb|ADI01686.1| signal recognition particle protein [Syntrophothermus lipocalidus DSM 12680] Length = 447 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 74/205 (36%), Positives = 114/205 (55%), Gaps = 7/205 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P V+++VG+ G GKTT KL++ + G + +L A D +R AAI QL++ ++ + V Sbjct: 101 PTVVMMVGLQGTGKTTTCAKLARSLLAQGRRPLLVAADIYRPAAIKQLQVLGEKCNCP-V 159 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 S + +A A + A++ D++I+DTAGRLH N LM + + L P Sbjct: 160 FSMGQENPVNIARAALEYARSNGRDIVILDTAGRLHINEELMNELKDLKSSLN------P 213 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 H +L V+DA TGQ+A+ F+ G TG+++TK+DG RGG + + P+ F G Sbjct: 214 HEILLVVDAMTGQDAVNVASSFNEQLGLTGVVLTKLDGDTRGGAALSVKAVAGCPIKFAG 273 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 VGE + DLEPF ++ I G D Sbjct: 274 VGEKLEDLEPFYPNRMASRILGMGD 298 >gi|161830238|ref|YP_001596381.1| signal recognition particle protein [Coxiella burnetii RSA 331] gi|161762105|gb|ABX77747.1| signal recognition particle protein [Coxiella burnetii RSA 331] Length = 461 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 159/289 (55%), Gaps = 22/289 (7%) Query: 39 RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87 R ++ ++ L D+ LI +D+ + V + +E + K ++V ++ +V+ D Sbjct: 21 RLTEENIQSTLHDIRSALIEADVALPVVKDFIEHVREKALGQEVIGNVRPGEALVKVVQD 80 Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAA 146 EL H + L + N + + P VI++ G+ G GKTT + KL++ + + K VM+A+ Sbjct: 81 --ELTHLLGDELVE-INLN-AQPPIVIVMAGLQGSGKTTTVAKLARWLLEIQKKSVMVAS 136 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 D +R AAI QL+ A + +A F ++ +A A KQA+ + +DVLI+DTAGRLH Sbjct: 137 ADVYRPAAIQQLETLASQINATFFPTQADQKPVEIAKAALKQAEKQFMDVLILDTAGRLH 196 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 +++LM + K I D P +L V+D+ GQ+A + F+ TG+I+TK+ Sbjct: 197 IDNVLMEEM-KAIS-----DAVTPTEILLVVDSMMGQDAANVAKSFNDTLPLTGVILTKL 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG RGG + + + + P+ F+GVGE I+ LEPF ++ I G D Sbjct: 251 DGDTRGGAALSMRMITQKPIKFVGVGEKIDALEPFHPNRMASRILGMGD 299 >gi|15679603|ref|NP_276720.1| signal recognition particle protein (docking protein) [Methanothermobacter thermautotrophicus str. Delta H] gi|2622733|gb|AAB86081.1| signal recognition particle protein (docking protein) [Methanothermobacter thermautotrophicus str. Delta H] Length = 358 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 94/272 (34%), Positives = 150/272 (55%), Gaps = 13/272 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS-ELIHK 94 I+ + +DD V +LE L+ SD+ + VA+KI EL + + V + + + E + K Sbjct: 83 ITEKDVDD-VLWDLEMALLESDVALEVAEKITTELKEELVGRKVKRSTEISEYTMEALKK 141 Query: 95 MLMPLSKPFNWDFSH-----RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 + + D +P VI+ VG+NG GKTT I K+++ GL+ ++AA DT Sbjct: 142 AVKDVLSVDGVDLPQLVEKKKPLVIMFVGINGTGKTTTIAKVARYFMKKGLEPVIAAADT 201 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+ AI+Q+ AD+ + G+D AA+A++A A+A+ DV++IDTAGR+ N Sbjct: 202 FRAGAIEQIGQHADKLGVKLISHRKGADPAAVAFDAVSHAKAQGKDVVLIDTAGRMQTNV 261 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 LM + K+ RV++ P ++ V DA TG +A+ Q F G +I+TK D Sbjct: 262 NLMDEMAKIKRVVR------PDLIVFVGDALTGNDAIEQAARFDEAVGIDAVILTKADAD 315 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 ARGG + I K P+ F+G+G+G +D+ F Sbjct: 316 ARGGAALSIGYMIKRPIIFMGIGQGYDDIMEF 347 >gi|46143422|ref|ZP_00135299.2| COG0541: Signal recognition particle GTPase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 462 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 96/298 (32%), Positives = 154/298 (51%), Gaps = 17/298 (5%) Query: 28 LKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-- 81 L + + +I RL +D +++ L ++ L+ +D+ + V ++ + ++ + +V+ Sbjct: 8 LSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERALGTEVNKSL 67 Query: 82 ---QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q L V + + ++ N + P VIL+ G+ G GKTT +GKL+K + + Sbjct: 68 TPGQEFLKIVQSELEIAMGEANEELNL-ATQPPAVILMAGLQGAGKTTSVGKLAKFLKER 126 Query: 139 -GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197 KV++ + D +R AAI QL+ A+ DF +E +A A K A+ DVL Sbjct: 127 HKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETTQKPVEIAELALKYAKLNFFDVL 186 Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257 I+DTAGRLH + +M I ++ RVL P L +DA TGQ+A + F+ Sbjct: 187 IVDTAGRLHVDGEMMEEIQQIHRVLN------PIETLFTVDAMTGQDAANTAKAFNEALP 240 Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF ++ I G D Sbjct: 241 LTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASRILGMGD 298 >gi|307330024|ref|ZP_07609175.1| signal recognition particle-docking protein FtsY [Streptomyces violaceusniger Tu 4113] gi|306884285|gb|EFN15320.1| signal recognition particle-docking protein FtsY [Streptomyces violaceusniger Tu 4113] Length = 419 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 110/293 (37%), Positives = 158/293 (53%), Gaps = 28/293 (9%) Query: 37 SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE--LIHK 94 S LDD EE+ED L+ +D+GVA +++VE L + +VL S L Sbjct: 137 SREHLDDDTWEEIEDTLLTADVGVAPTEELVERLRER--------VKVLGTRSPDELRGL 188 Query: 95 MLMPLSKPFNWDFSHRPHVILVVGVNGVGKT--------------TVIGKLSKKMSDAGL 140 + L + + H VG NG K T GKL++ + G Sbjct: 189 LREELLRLIGTEADRSVHTESGVGANGEEKPGVVMVVGVNGTGKTTTTGKLARVLVADGK 248 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 V+L A DTFR+AA DQL+ W +R A V D A++A++A K+ A+ DV++ID Sbjct: 249 SVVLGAADTFRAAAADQLQTWGERVGARTVRGPEAGDPASVAFDAVKEGIAESADVVLID 308 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPH-APHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 TAGRLH + LM +GK+ RV+++ H A VL VLDATTGQN L Q +F V T Sbjct: 309 TAGRLHTKTGLMDELGKVKRVVEK---HGAVDEVLLVLDATTGQNGLVQARVFAEVVDIT 365 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 G+++TK+DGTA+GG ++ + K+PV +G+GEG +DL PF + F + G Sbjct: 366 GIVLTKLDGTAKGGIVVAVQRELKVPVKLVGLGEGADDLAPFEPEAFVDALIG 418 >gi|238021560|ref|ZP_04601986.1| hypothetical protein GCWU000324_01460 [Kingella oralis ATCC 51147] gi|237866174|gb|EEP67216.1| hypothetical protein GCWU000324_01460 [Kingella oralis ATCC 51147] Length = 454 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 91/286 (31%), Positives = 144/286 (50%), Gaps = 21/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDVSELIHK 94 +D ++E L ++ L+ +D+ + + + V E L +A D++ + + + Sbjct: 24 EDNIKEALREVRLALLEADVALPIVKDFVNQVKERALGHEFAHDLTPDQAFFGIVNEALT 83 Query: 95 MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRS 152 LM + P +L+ G+ G GKTT +GKLS+ K D K++L + D +R Sbjct: 84 ELMGKENSALNLAAAPPATVLMAGLQGAGKTTTVGKLSRLLKEQDKKKKILLVSADVYRP 143 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QLK+ A++ DF S++ +A A A+ DVL++DTAGRL + +M Sbjct: 144 AAIEQLKLLAEQVGVDFFPSDVSQKPVDIALAAQDYAKKHFYDVLMVDTAGRLAIDEEMM 203 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA GQ+A+ + F+ TG+I+TKMDG Sbjct: 204 NEIKAI---------HAAVNPVETLFVVDAMLGQDAVNTAQAFNEALPLTGVILTKMDGD 254 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ FLG+GE IN LEPF + I G D Sbjct: 255 SRGGAALSVRQVTGKPIKFLGIGEKINGLEPFYPDRVAGRILGMGD 300 >gi|296314847|ref|ZP_06864788.1| signal recognition particle protein [Neisseria polysaccharea ATCC 43768] gi|296838348|gb|EFH22286.1| signal recognition particle protein [Neisseria polysaccharea ATCC 43768] Length = 456 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/286 (31%), Positives = 153/286 (53%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + K ++V+ Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALV 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + + P V+L+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGKENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVLI+DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLIVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I D HA P L V+DA GQ+A+ + F+ TG+++TKMDG Sbjct: 203 NEIK---------DLHAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299 >gi|320100244|ref|YP_004175836.1| signal recognition particle subunit FFH/SRP54 (srp54) [Desulfurococcus mucosus DSM 2162] gi|319752596|gb|ADV64354.1| signal recognition particle subunit FFH/SRP54 (srp54) [Desulfurococcus mucosus DSM 2162] Length = 450 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 97/284 (34%), Positives = 145/284 (51%), Gaps = 21/284 (7%) Query: 41 LDDGVREELEDLLIRSDIGVAVA----QKIVEELLTKRYAKDVSVQR----VLYD-VSEL 91 +D+ +RE L+ L+R+D+ + +A +I E L +S + V+Y+ ++ L Sbjct: 23 VDEFIRE-LQKELVRADVNLKLAMELTSRIKERALKAEPPPGISRKEWFITVVYEELTRL 81 Query: 92 IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 + P KP + +P VI++VG+ G GKTT KL+ GL+V L A DTFR Sbjct: 82 LGGERKPSVKP-----AKKPWVIMLVGLQGSGKTTTTAKLAYFYKLEGLRVGLVAADTFR 136 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 AA QLK ++ SDA A+A + + + +K+DV+IIDTAGR H L Sbjct: 137 PAAYMQLKQLGEQVGVPVYGEPGNSDAVAIAVKGVEFFRERKMDVIIIDTAGRHHREEDL 196 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 + + KM +K P V+ V+DA GQ A FH +I+TK+DGTA+ Sbjct: 197 LEEMKKMSEHVK------PDEVMLVIDAAIGQQAFNIARRFHEATPIGSIIVTKLDGTAK 250 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 GGG + V + F+G GE I++LE F F + I G D Sbjct: 251 GGGALSAVAATGASIKFIGTGEKIDELEVFNPPRFVSRILGLGD 294 >gi|292491046|ref|YP_003526485.1| signal recognition particle protein [Nitrosococcus halophilus Nc4] gi|291579641|gb|ADE14098.1| signal recognition particle protein [Nitrosococcus halophilus Nc4] Length = 452 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 94/291 (32%), Positives = 153/291 (52%), Gaps = 22/291 (7%) Query: 37 SSRRLDDGVREELEDL---LIRSDIGVAVAQ----KIVEELLTKRYAKDVSVQRVLYDVS 89 +R +D +++ L ++ L+ +D+ + V + K+ E + + + ++ +V Sbjct: 19 QARLTEDNIKDTLREVRVALLEADVALPVVRDFVAKVRERAIGQEVLRSLTPGQVFI--- 75 Query: 90 ELIHKMLMPL----SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VML 144 +++H+ LM + ++ D P VIL+ G+ G GKTT + KL++ + + K V++ Sbjct: 76 KIVHEELMAVMGEAAEGLKLDVRP-PAVILMAGLQGSGKTTTVAKLARWLKERQKKSVLV 134 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 + D +R AAI QL+ A DF SE D +A AF+QA+ + DVLIIDTAGR Sbjct: 135 TSADVYRPAAIQQLETLAQEVEVDFYPSEASQDPVVIAQGAFQQARTRLFDVLIIDTAGR 194 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 LH + +MA I ++ ++ P L V+D+ TGQ+A F+ TG+I+T Sbjct: 195 LHVDDQMMAEIKRLHGAVE------PAETLFVVDSMTGQDAANTARAFNDSLALTGVILT 248 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 K+DG ARGG + I P+ FLGVGE LE F ++ I G D Sbjct: 249 KVDGDARGGAALSIRQITGKPIKFLGVGEKTAALELFHPDRLASRILGMGD 299 >gi|152978431|ref|YP_001344060.1| signal recognition particle protein [Actinobacillus succinogenes 130Z] gi|150840154|gb|ABR74125.1| signal recognition particle protein [Actinobacillus succinogenes 130Z] Length = 463 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 96/305 (31%), Positives = 158/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + +I RL +D +++ L ++ L+ +D+ + V ++ + ++ + Sbjct: 2 FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERAIG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V+ Q L V + + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 EEVNKSLTPGQEFLKVVRTELEAAMGESNESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KV++ + D +R AAI QL+ A DF SE+ + + A +A+ Sbjct: 121 AKFLHERHKKKVLVVSADVYRPAAIKQLETLAQAVHVDFFPSEVNQNPVDIVKAAVAEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVLI+DTAGRLH + +M I ++ L+ P L +DA TGQ+A + Sbjct: 181 LKFYDVLIVDTAGRLHVDGEMMDEIKQIHAALE------PVETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|237809533|ref|YP_002893973.1| signal recognition particle protein [Tolumonas auensis DSM 9187] gi|237501794|gb|ACQ94387.1| signal recognition particle protein [Tolumonas auensis DSM 9187] Length = 457 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 95/307 (30%), Positives = 158/307 (51%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIV----EELLT 72 F + + +L + +I RL DD +++ L ++ L+ +D+ + V ++ V E + Sbjct: 2 FETLTERLSATLRNISGRGRLTDDNIKDTLREVRMALLEADVALPVVKEFVNRVKERAVG 61 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIG 129 + K +S + +++H L+ + N D + P ++L+ G+ G GKTT + Sbjct: 62 QEVNKSLSPGQAFI---KIVHGELISVMGEANQDLNLATQPPAILLMAGLQGAGKTTSVA 118 Query: 130 KLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+K +++ KVM+ + D +R AAI QL+ A+ +F S A +A A Sbjct: 119 KLAKFLTERQKKKVMVVSADVYRPAAIKQLETLANDIGIEFFPSSTSQTPAEIAAAALDS 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ + DVLI+DTAGRLH +S +M I ++ + L P L V+DA TGQ+A Sbjct: 179 ARKRYFDVLIVDTAGRLHVDSEMMEEIQQLHKQLN------PIETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+I+TK DG ARGG + + P+ F+G+GE + LEPF ++ Sbjct: 233 AKAFSEALPLTGVILTKADGDARGGAALSVRHITGKPIKFIGMGEKTDALEPFYPDRIAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|229829004|ref|ZP_04455073.1| hypothetical protein GCWU000342_01089 [Shuttleworthia satelles DSM 14600] gi|229792167|gb|EEP28281.1| hypothetical protein GCWU000342_01089 [Shuttleworthia satelles DSM 14600] Length = 451 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 158/304 (51%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ ++ RL +D V+ L+++ L+ +D+ V + + + Sbjct: 3 FESLSEKLQNAFRNLRGKGRLSEDDVKLALKEIRIALLEADVNYRVVKDFTRAVQERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 D+ Q+V+ V E + +M+ ++ + VI+++G+ G GKTT KL Sbjct: 63 TDILNGLNPAQQVVKLVDEELTRMMGSETREIAYRPGQEITVIMMIGLQGAGKTTTAAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + KM G + +L A D +R AAIDQL+I A++ F + + +A A++ A+ Sbjct: 123 AGKMKQKGKRPLLVACDIYRPAAIDQLRINAEKQQVAFFSMGDKNRPSDIARAAYEHARK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +VLI+DTAGRLH + +MA + ++ + ++L V+DA TGQ+A+ + Sbjct: 183 NNNNVLILDTAGRLHIDEDMMAELEEI-----KSGVDVAQTIL-VVDAMTGQDAVNVAQT 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F G G+I+TK+DG +RGG + I P+ ++G+GE ++DLE F ++ I Sbjct: 237 FDQKVGVDGVILTKLDGDSRGGAALSIRAVTGKPILYVGMGEKLSDLEQFYPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|254428353|ref|ZP_05042060.1| signal recognition particle protein [Alcanivorax sp. DG881] gi|196194522|gb|EDX89481.1| signal recognition particle protein [Alcanivorax sp. DG881] Length = 503 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 92/292 (31%), Positives = 155/292 (53%), Gaps = 34/292 (11%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSE 90 +D +R+ L ++ L+ +D+ + V ++ VE++ K ++V + +++ D E Sbjct: 24 EDNIRDTLREVRKALLEADVALPVVKEFVEQVKEKALGQEVLQSLNPGQAFVKIVND--E 81 Query: 91 LIHKM------LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVM 143 L+H M L +KP P +IL+ G+ G GKTT + KL++ + + KVM Sbjct: 82 LVHTMGDANDALDLATKP--------PAIILMAGLQGAGKTTSVAKLARFLQEREKKKVM 133 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 + + D +R AAI+QLK A +F S D +A A ++A+ + +DVLI+DTAG Sbjct: 134 VVSADVYRPAAIEQLKTLAGEVETNFFPSTGDQDPVDIANAALEEARRRYMDVLIVDTAG 193 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 RLH + +M+ I ++ + +P L V+DA TGQ+A + F+ TG+I+ Sbjct: 194 RLHVDEDMMSEIKRLHGAI------SPVETLFVVDAMTGQDAANTAQAFNEALPLTGVIL 247 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TK DG +RGG + + P+ F+G+GE + LEPF ++ I G D Sbjct: 248 TKADGDSRGGAALSVRQLTGKPIKFIGMGEKTDALEPFHPDRIASRILGMGD 299 >gi|189346909|ref|YP_001943438.1| signal recognition particle protein [Chlorobium limicola DSM 245] gi|189341056|gb|ACD90459.1| signal recognition particle protein [Chlorobium limicola DSM 245] Length = 449 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/268 (31%), Positives = 139/268 (51%), Gaps = 12/268 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ VA+K+VE++ K ++V Q ++ V++ + +++ +KP N Sbjct: 38 LLSADVNYKVAKKLVEDIREKSLGEEVIKSVSPAQMIVKIVNDELTELMGGENKPLNLSP 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 P +I+V G+ G GKTT KL++++ G +L A D +R AAIDQLK ++ Sbjct: 98 KKLPAIIMVAGLQGSGKTTFCAKLARRLKKNGKNPLLVAADVYRPAAIDQLKTLGEQVEV 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 E DA + + A+A DVLI+DTAGRL + +MA + LK Sbjct: 158 PVFSIE-EPDAMKAVMQGLEAARAGAKDVLIVDTAGRLQIDEKMMAEAEAIKNALK---- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ GQ A+ F+ G+++TK+DG ARGG + I + P+ Sbjct: 213 --PDELLFVVDSMMGQEAVNTAREFNERLDFDGVVLTKLDGDARGGAALSIRQVVEKPIK 270 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ +GE ++DL+ F + + I G D Sbjct: 271 FISIGEKVDDLDLFYPERMAQRILGMGD 298 >gi|302389629|ref|YP_003825450.1| signal recognition particle subunit FFH/SRP54 (srp54) [Thermosediminibacter oceani DSM 16646] gi|302200257|gb|ADL07827.1| signal recognition particle subunit FFH/SRP54 (srp54) [Thermosediminibacter oceani DSM 16646] Length = 446 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 88/269 (32%), Positives = 144/269 (53%), Gaps = 15/269 (5%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + ++++ + ++V Q+V+ V++ + K++ P N Sbjct: 39 LLEADVNYKVVKDFIQKVTERAVGQEVLESLTPAQQVIKIVNDELTKLMGPKEARLNISP 98 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S + +V+++VG+ G GKTT GKL +S G + +L A D +R AAI QL++ ++ Sbjct: 99 S-KVNVVMMVGLQGSGKTTTSGKLGLYLSKKGKRPLLVAADIYRPAAIKQLQVVGEKIGL 157 Query: 168 D-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 F E + ++ A + A DV+IIDTAGRLH + LM ++I + D Sbjct: 158 PVFTMGE--QNPVNISKAAVEYASRHNNDVVIIDTAGRLHVDDELMQ---ELINIK---D 209 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P +L V+D+ TGQ+A+ E FH TGLI+TK+DG RGG + I P+ Sbjct: 210 AVNPDEILLVVDSMTGQDAVNVAETFHNKLQLTGLILTKLDGDTRGGAALSIKAVTGCPI 269 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE + DLEPF + ++ I G D Sbjct: 270 KFVGMGEKLTDLEPFYPERMASRILGMGD 298 >gi|307353992|ref|YP_003895043.1| signal recognition particle-docking protein FtsY [Methanoplanus petrolearius DSM 11571] gi|307157225|gb|ADN36605.1| signal recognition particle-docking protein FtsY [Methanoplanus petrolearius DSM 11571] Length = 361 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 111/196 (56%), Gaps = 6/196 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 D +P +L GVNG GKTT I K++ + G V++ +GDTFR+ A Q+K ADR Sbjct: 159 DSHEKPVKVLFTGVNGAGKTTTIAKVAFYLKSKGYSVVIGSGDTFRAGANQQMKTHADRI 218 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + G+D +A+ ++ A+A +DV++ DTAGR HN LM + K+ RV+ Sbjct: 219 GVKVISHQEGADPSAVLFDTVNYAKAHNIDVVLADTAGRFHNKGNLMKQLEKIRRVMN-- 276 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P V V +A G +A+ + E F++ GT +++TK D +GG I I T P Sbjct: 277 ----PDIVAYVDEAVAGNDAVIRAEEFNSAVGTDVVVLTKADMDTKGGAAISIAHTIGKP 332 Query: 286 VYFLGVGEGINDLEPF 301 + FLG+G+G +D+ PF Sbjct: 333 LMFLGMGQGYDDIVPF 348 >gi|296241780|ref|YP_003649267.1| signal recognition particle subunit FFH/SRP54 (srp54) [Thermosphaera aggregans DSM 11486] gi|296094364|gb|ADG90315.1| signal recognition particle subunit FFH/SRP54 (srp54) [Thermosphaera aggregans DSM 11486] Length = 448 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 100/299 (33%), Positives = 150/299 (50%), Gaps = 18/299 (6%) Query: 28 LKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVA----QKIVEELLTKRYAKDVS 80 LKE I S + ++ V E ++DL L++SD+ + +A +KI E LT+ VS Sbjct: 8 LKESIAKFFRSEKYEEAVNEFIKDLQKELVKSDVNLNLAFEITKKIKERALTQEPPVGVS 67 Query: 81 VQR-VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139 + L V E + K+L SKP + + +P +I++VG+ G GKTT KL+ G Sbjct: 68 RKEWFLSIVYEELVKLLGGDSKP-SIKPARKPWIIMLVGLQGSGKTTTAAKLAYFYKLEG 126 Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199 KV L A DTFR AA DQL+ ++ DA +A K K +V+II Sbjct: 127 YKVGLVAADTFRPAAYDQLRQLGEQIGVPVYGDPSIEDAVEIASRGVKYFVEKGFEVVII 186 Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 DTAGR H L+ + + +K P ++ V+D + GQ A + FH Sbjct: 187 DTAGRHHKEEDLLEEMRLISSSVK------PDEIILVIDGSIGQQAYNIAKKFHETTPIG 240 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 +I+TK+DGTA+GGG + V P+ F+G+GE + D E F S ++ L YG+ Sbjct: 241 SIIVTKLDGTAKGGGALSAVAATGAPIKFVGLGEKVEDFEVFKP---SKLVGRVLGYGD 296 >gi|117621132|ref|YP_855207.1| signal recognition particle protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562539|gb|ABK39487.1| signal recognition particle protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 458 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 96/307 (31%), Positives = 159/307 (51%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIV----EELLT 72 F + + +L + ++ RL ++ ++E L ++ L+ +D+ + V + V E + Sbjct: 2 FENLTERLSRTLRNVSGRGRLTEENIKETLREVRMALLEADVALPVVRDFVARVKERAVG 61 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIG 129 + AK +S + +++H L+ + N + P +IL+ G+ G GKTT +G Sbjct: 62 QEVAKSLSPGQAFI---KIVHGELVSVMGEANEQLNLAAQPPAIILMAGLQGAGKTTTVG 118 Query: 130 KLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+K + + + KV++ + D +R AAI QL+ A+ DF S+ +A A Q Sbjct: 119 KLAKLLKERSKKKVLVVSADVYRPAAIKQLETLANDIGVDFFPSDASQKPVDIANAAIDQ 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DV+I+DTAGRLH +S +M I + +K P L V+DA TGQ+A Sbjct: 179 ARKKFYDVVIVDTAGRLHVDSDMMDEIKHLHATIK------PVETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F+ TG+I+TK DG ARGG + + PV F+G+GE + LEPF ++ Sbjct: 233 AKAFNEALPLTGVILTKADGDARGGAALSVRHITGKPVKFIGMGEKTDALEPFHPDRLAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|71279264|ref|YP_270728.1| signal recognition particle protein [Colwellia psychrerythraea 34H] gi|71145004|gb|AAZ25477.1| signal recognition particle protein [Colwellia psychrerythraea 34H] Length = 463 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 100/307 (32%), Positives = 156/307 (50%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + +I RL +D ++E L ++ L+ +D+ + V ++ + ++ K Sbjct: 2 FDNLSERLSKTLKNISGRGRLTEDNIKETLREVRMALLEADVALPVIREFIAKVKEKAVG 61 Query: 77 KDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLS 132 DVS + +++ K L N R P V+L+ G+ G GKTT + KL+ Sbjct: 62 TDVSKSLTPGQIFVKIVQKELESAMGEVNEGLDLRAAPPAVVLMAGLQGAGKTTSVAKLA 121 Query: 133 KKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 K +++ KV++ + D +R AAI QL+ A+ S F S+I +A A A+ Sbjct: 122 KFLTEREKKKVLVVSADVYRPAAIKQLETLAEEISVGFFPSDIKQKPIDIANAAIDHAKK 181 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQ 248 DVLI+DTAGRLH + +MA I ++ HA P L +DA TGQ+A Sbjct: 182 NFYDVLIVDTAGRLHIDENMMAEIQQL---------HAAINPIETLFTVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F+ TG+I+TK DG ARGG + I P+ F+GVGE I LEPF ++ Sbjct: 233 AKAFNDALPLTGIILTKTDGDARGGAALSIRHITGKPIKFMGVGEKIEALEPFHPDRIAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|313901971|ref|ZP_07835387.1| signal recognition particle subunit FFH/SRP54 (srp54) [Thermaerobacter subterraneus DSM 13965] gi|313467760|gb|EFR63258.1| signal recognition particle subunit FFH/SRP54 (srp54) [Thermaerobacter subterraneus DSM 13965] Length = 445 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 72/205 (35%), Positives = 114/205 (55%), Gaps = 6/205 (2%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P V+++VG+ G GKTT KL++ ++ G + +L A D +R AA++QL + Sbjct: 101 PAVVMLVGLQGSGKTTTAAKLARLLTRQGRQPLLVAADVYRPAAVEQLVTLGQQVQVPVY 160 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 D +A E +A+ + DV++IDTAGRLH + LM + ++ + + AP Sbjct: 161 APGTDRDPVDIAREGVAEARRRGRDVVLIDTAGRLHIDDALMEELERIRQAV------AP 214 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 +L V+DA TGQ+A+ E FH G G+I+TK+DG ARGG + + P+ F G Sbjct: 215 REILLVVDAMTGQDAVNVAETFHRRLGIDGVILTKLDGDARGGAALSVRAVTGRPIKFAG 274 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 +GE ++ LEPF + ++ I G D Sbjct: 275 LGERVDQLEPFHPERMASRILGMGD 299 >gi|5912310|emb|CAB56107.1| cell division protein [Rickettsia typhi] Length = 136 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 64/136 (47%), Positives = 95/136 (69%), Gaps = 2/136 (1%) Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237 A++AY A +++ + +D+L IDTAGRLHNN LM + K+++V+K+LD +AP HS+L ++ Sbjct: 2 ASVAYRAIQESIKQNIDILFIDTAGRLHNNKNLMDELSKIVKVIKKLDENAPTHSIL-II 60 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA TGQN Q+E F+ V TGLI+TK+DG+A+ G L+ V +P+YF+G+GE I D Sbjct: 61 DAVTGQNTYNQIEYFNDVTNLTGLIITKLDGSAKAGVLVGAVQKFNLPIYFIGIGEQIED 120 Query: 298 LEPFVAKDFSAVITGC 313 L+ F DFS + G Sbjct: 121 LKIFNRHDFSRSLVGL 136 >gi|5912301|emb|CAB56084.1| cell division protein [Rickettsia prowazekii] gi|5912305|emb|CAB56088.1| cell division protein [Rickettsia prowazekii] Length = 136 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 65/136 (47%), Positives = 95/136 (69%), Gaps = 2/136 (1%) Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237 A++AY A +++ + +D+L IDTAGRLHNN LM + K+++V+K+LD +AP HS+L ++ Sbjct: 2 ASVAYRAIEESIKQNIDILFIDTAGRLHNNKNLMDELSKIVKVIKKLDENAPTHSIL-II 60 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA TGQN Q+E F+ V TGLI+TK+DG+A+ G L+ V +PVYF+G+GE I D Sbjct: 61 DAITGQNTYNQIEYFNDVTNLTGLIVTKLDGSAKAGVLVGAVQKFNLPVYFIGIGEKIED 120 Query: 298 LEPFVAKDFSAVITGC 313 L+ F DFS + G Sbjct: 121 LKIFNRHDFSRSLVGL 136 >gi|251793274|ref|YP_003008002.1| signal recognition particle protein [Aggregatibacter aphrophilus NJ8700] gi|247534669|gb|ACS97915.1| signal recognition particle protein [Aggregatibacter aphrophilus NJ8700] Length = 459 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 101/310 (32%), Positives = 163/310 (52%), Gaps = 27/310 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + +I RL +D +++ L ++ L+ +D+ + V + + ++ K A Sbjct: 2 FENLSDRLAKTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINKV--KERA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E I + L ++ N + P VIL+ G+ G GKTT +G Sbjct: 60 IGVEVNKSLTPGQEFIKIVQAELEAAMGEANESLNL-ATQPPAVILLAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+K + + KV++ + D +R AAI QL+ A + DF S++ + +A A + Sbjct: 119 KLAKFLRERHKKKVLVVSADVYRPAAIKQLETLAQAVNVDFFPSDVKQNPVDIAKTALAE 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNA 245 A+ K DVLI+DTAGRLH + G+M+ +K++ HA P L +DA TGQ+A Sbjct: 179 AKLKFYDVLIVDTAGRLHVD-------GEMMNEIKQI--HAALNPIETLFTVDAMTGQDA 229 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + F+ +G+I+TK+DG ARGG + I P+ FLGVGE + LEPF Sbjct: 230 ANTAKAFNEALPLSGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDR 289 Query: 306 FSAVITGCLD 315 ++ I G D Sbjct: 290 VASRILGMGD 299 >gi|171185970|ref|YP_001794889.1| GTP-binding signal recognition particle [Thermoproteus neutrophilus V24Sta] gi|226734219|sp|B1Y9L4|SRP54_THENV RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|170935182|gb|ACB40443.1| GTP-binding signal recognition particle SRP54 G- domain [Thermoproteus neutrophilus V24Sta] Length = 433 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/232 (36%), Positives = 124/232 (53%), Gaps = 12/232 (5%) Query: 84 VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143 VLY+ EL+ L+ +P + + +P+V+L++GV G GKTT KL+K + G KV Sbjct: 76 VLYE--ELVK--LLGGEQPPEFKPTKKPYVVLLLGVEGSGKTTTAAKLAKLLVKRGYKVG 131 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 L DT R AA DQL+ A++ F G DA +A + K +DV+I+DTAG Sbjct: 132 LVETDTVRPAAFDQLRQLAEKIGVPFYGERDGKDAVEIARRGVQNL--KNLDVVIVDTAG 189 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 R N L+ + + + +P V+ V+DAT G+ A Q E F +I+ Sbjct: 190 RHRNEEALLQEVKAIYEAV------SPDEVVLVIDATVGKLAAAQAEAFMRYLPIHSVII 243 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TKMD TARGGG + V V F+GVGE +++LE F+ + F A + G D Sbjct: 244 TKMDSTARGGGALAAVAKTGAKVKFIGVGEDVDELEMFIPRKFVARVLGMGD 295 >gi|116490535|ref|YP_810079.1| signal recognition particle subunit FFH/SRP54 (srp54) [Oenococcus oeni PSU-1] gi|290889938|ref|ZP_06553024.1| hypothetical protein AWRIB429_0414 [Oenococcus oeni AWRIB429] gi|116091260|gb|ABJ56414.1| signal recognition particle subunit FFH/SRP54 (srp54) [Oenococcus oeni PSU-1] gi|290480380|gb|EFD89018.1| hypothetical protein AWRIB429_0414 [Oenococcus oeni AWRIB429] Length = 507 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 90/287 (31%), Positives = 148/287 (51%), Gaps = 16/287 (5%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 +S LD+ +RE + L+ +D+ + A+ ++++ K V ++V+ V++ Sbjct: 23 VSETDLDETLRE-IRLALLEADVNLKTARNFIKQVRDKALGAKVLEGLNPSEQVVKIVND 81 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDT 149 + M+ + P N S P VI++ G+ G GKTT + KL+ ++ D + +L A D Sbjct: 82 QLTAMMGEKAVPLNKS-SKIPTVIMMAGLQGAGKTTTVAKLANRLKDENHARPLLIAADV 140 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI+QLK D+ S +G + + + KQA+ K D + IDTAGRL + Sbjct: 141 YRPAAIEQLKSLGDQLSIPVFDEGVGENPRKIVEDGLKQARENKNDYVFIDTAGRLQIDQ 200 Query: 210 ILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 +LM + LK ++ A P +L +DA TGQNA F+ G TG+++TK+DG Sbjct: 201 VLM-------QELKDIEKMAEPDEILLTVDAMTGQNATETARGFNDALGITGVVLTKLDG 253 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I P+ F+G GE + DL+ F ++ I G D Sbjct: 254 DTRGGAALSIREVTGKPIKFVGEGEKVTDLDVFYPDRMASRILGMGD 300 >gi|123969017|ref|YP_001009875.1| signal recognition particle protein (SRP54) [Prochlorococcus marinus str. AS9601] gi|123199127|gb|ABM70768.1| signal recognition particle protein (SRP54) [Prochlorococcus marinus str. AS9601] Length = 498 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 89/286 (31%), Positives = 150/286 (52%), Gaps = 14/286 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 IS ++D ++E ++ L+ +D+ ++V ++ + ++ K ++V Q+ + V++ Sbjct: 22 ISENNINDALKE-VKRALLDADVSLSVVKEFISDVKDKAIGEEVVRGVNPGQKFIEVVNK 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + ++ + P N + P VIL+ G+ G GKTT GKL + + KV+L A D + Sbjct: 81 ELINIMGNENSPLNEN-EKSPTVILMAGLQGAGKTTATGKLGLYLKEKDKKVLLVAADIY 139 Query: 151 RSAAIDQLKIWADRTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 R AA++QLK + + F E S +A EA A + +IIDTAGRL + Sbjct: 140 RPAAVEQLKTLGSQYELEVFSAKEKNSKPEEIAKEALNFANENDFNSIIIDTAGRLQIDD 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 +M+ +M+R+ + P +L V+D+ GQ A + FH G TG I+TK+DG Sbjct: 200 SMMS---EMVRIK---EVSNPDEILLVVDSMIGQEAADLTKSFHEKVGITGAILTKLDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + I P+ F+GVGE I L+PF + ++ I G D Sbjct: 254 SRGGAALSIRKISGKPIKFIGVGEKIEALQPFHPERMASRILGMGD 299 >gi|311693648|gb|ADP96521.1| signal recognition particle protein [marine bacterium HP15] Length = 463 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 91/290 (31%), Positives = 151/290 (52%), Gaps = 20/290 (6%) Query: 37 SSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD------ 87 +R DD +++ L ++ L+ +D+ + V + VE + ++ A VQR L Sbjct: 19 QARLTDDNIKDTLREVRMALLEADVALPVVKDFVEGV--RKRAIGQEVQRSLTPGQVFVK 76 Query: 88 -VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLA 145 V + + +++ ++ N + P V+++ G+ G GKTT + KLS+ + + K V++ Sbjct: 77 VVQQELERVMGEGNESLNLNVQP-PAVVMMAGLQGAGKTTTVAKLSRFLKERQKKSVLVV 135 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 + D +R AAI QL+ A +F S D +A A A+ K +DV+I+DTAGRL Sbjct: 136 SADVYRPAAIRQLETLAGEVGVEFFPSTADQDPVDIAEGAIAAARKKHIDVVILDTAGRL 195 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 H + +M IG++ + + P L V+DA TGQ+A + F+ TG+++TK Sbjct: 196 HVDEQMMGEIGRLHKAVN------PVETLFVVDAMTGQDAANTAKAFNDALPLTGVVLTK 249 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG ARGG + + P+ FLGVGE + LEPF ++ I G D Sbjct: 250 TDGDARGGAALSVRHITGKPIKFLGVGEKSDALEPFYPDRVASRILGMGD 299 >gi|257454123|ref|ZP_05619396.1| signal recognition particle protein [Enhydrobacter aerosaccus SK60] gi|257448451|gb|EEV23421.1| signal recognition particle protein [Enhydrobacter aerosaccus SK60] Length = 488 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 100/303 (33%), Positives = 157/303 (51%), Gaps = 23/303 (7%) Query: 23 STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--- 79 STSL+ G T ++ + D +RE + L+ +D+ + V + V + K ++V Sbjct: 10 STSLRSISG-TGQLTEDNIKDTLRE-VRMALLEADVALPVTRDFVSRVKDKALGQEVLKE 67 Query: 80 -----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSK 133 + +++YD EL M S + + + +P V+ L+ G+ G GKTT GKL+K Sbjct: 68 LAPGQAFVKIVYD--ELTEMMG---SANQSLEMTGKPPVVYLLAGLQGAGKTTTAGKLAK 122 Query: 134 KMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 + + KVML + D +R AAI QL+ A++ A FV S + +A A +QA+ + Sbjct: 123 YLQERQKKKVMLVSADVYRPAAIKQLEQVAEQVKASFVPSSADQNPIDIAKRAIEQAKVQ 182 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 D+LIIDTAGRLH + +M I + + P L V+D+ TGQ+A + F Sbjct: 183 FQDILIIDTAGRLHIDEAMMDEIKALTAAV------TPSETLFVVDSMTGQDAANTAKAF 236 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + TG+I+TK DG ARGG + + P+ FLG GE ++ LEPF + + I G Sbjct: 237 NDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGRGEKLDALEPFHPERVAQRILG 296 Query: 313 CLD 315 D Sbjct: 297 MGD 299 >gi|29653794|ref|NP_819486.1| signal recognition particle, subunit FFH/SRP54 [Coxiella burnetii RSA 493] gi|29541057|gb|AAO90000.1| signal recognition particle, subunit FFH/SRP54 [Coxiella burnetii RSA 493] Length = 461 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 159/289 (55%), Gaps = 22/289 (7%) Query: 39 RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87 R ++ ++ L D+ LI +D+ + V + +E + K ++V ++ +V+ D Sbjct: 21 RLTEENIQSTLHDIRSALIEADVALPVVKDFIEHVREKALGQEVIGNVRPGEALVKVVQD 80 Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAA 146 EL H + L + N + + P VI++ G+ G GKTT + KL++ + + K VM+A+ Sbjct: 81 --ELTHLLGDELVE-INLN-AQPPIVIVMAGLQGSGKTTTVAKLARWLLEIQKKSVMVAS 136 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 D +R AAI QL+ A + +A F ++ +A A KQA+ + +DVLI+DTAGRLH Sbjct: 137 ADVYRPAAIQQLETLASQINAIFFPTQADQKPVEIAKAALKQAEKQFMDVLILDTAGRLH 196 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 +++LM + K I D P +L V+D+ GQ+A + F+ TG+I+TK+ Sbjct: 197 IDNVLMEEM-KAIS-----DAVTPTEILLVVDSMMGQDAANVAKSFNDTLPLTGVILTKL 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG RGG + + + + P+ F+GVGE I+ LEPF ++ I G D Sbjct: 251 DGDTRGGAALSMRMITQKPIKFVGVGEKIDALEPFHPNRMASRILGMGD 299 >gi|225440855|ref|XP_002276439.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 517 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 96/309 (31%), Positives = 158/309 (51%), Gaps = 23/309 (7%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----- 70 +LT G + KLK ++++ + + +R+ + L+ +D+ + V ++ V+ + Sbjct: 33 QLTSGLEAAWTKLKG--EEVLTKENIVEPMRD-IRRALLEADVSLPVVRRFVQAVSEQAV 89 Query: 71 ---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126 L + D + ++++D EL+ M +S+ F+ P VIL+ G+ GVGKTT Sbjct: 90 GVGLIRGVKPDQQLVKIVHD--ELVKLMGGEVSE---LVFAKSGPTVILLAGLQGVGKTT 144 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 V KL+ + G ML AGD +R AAIDQL I ++ + + +A + Sbjct: 145 VCAKLAFYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVDVPVYTAGTEVKPSQIAKQGL 204 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 ++A+ K +DV+I+DTAGRL + +M + + R + P VL V+DA TGQ A Sbjct: 205 EEARKKNIDVVIVDTAGRLQIDKAMMDELKDVKRAIN------PTEVLLVVDAMTGQEAA 258 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 V F+ G TG I+TK+DG +RGG + + P+ +G GE + DLEPF Sbjct: 259 ALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRM 318 Query: 307 SAVITGCLD 315 + I G D Sbjct: 319 AGRILGMGD 327 >gi|120555223|ref|YP_959574.1| signal recognition particle protein [Marinobacter aquaeolei VT8] gi|120325072|gb|ABM19387.1| signal recognition particle subunit FFH/SRP54 (srp54) [Marinobacter aquaeolei VT8] Length = 485 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 96/322 (29%), Positives = 164/322 (50%), Gaps = 22/322 (6%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVA 61 + S +RK + F + +L + I RL DD +++ L ++ L+ +D+ + Sbjct: 17 ICVNKFSGVRK-SNMFENLQDRLSGSLRKISGQARLTDDNIKDTLREVRMALLEADVALP 75 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYD-------VSELIHKMLMPLSKPFNWDFSHRPHVI 114 V + +E + + ++V QR L V + + +++ ++ N + P VI Sbjct: 76 VVKAFIEGVRERAIGQEV--QRSLTPGQVFVKVVQQELERVMGEGNESLNL-ATRPPAVI 132 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 ++ G+ G GKTT + KLS+ + + K V++ + D +R AAI QL+ A +F S Sbjct: 133 MMAGLQGAGKTTTVAKLSRFLKEREKKSVLVVSADIYRPAAIRQLETLAGEVGVEFFPST 192 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 D +A A + A+ K +DV+I+DTAGRLH + +M IG++ + + P Sbjct: 193 TEQDPVDIANGAIEAARRKHIDVVILDTAGRLHVDEQMMGEIGRLHKAVN------PVET 246 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L V+DA TGQ+A + F+ TG+++TK DG ARGG + + P+ FLG+GE Sbjct: 247 LFVVDAMTGQDAANTAKAFNDALPLTGVVLTKTDGDARGGAALSVRHITGKPIKFLGIGE 306 Query: 294 GINDLEPFVAKDFSAVITGCLD 315 + LEPF ++ I G D Sbjct: 307 KSDALEPFYPDRVASRILGMGD 328 >gi|160947510|ref|ZP_02094677.1| hypothetical protein PEPMIC_01444 [Parvimonas micra ATCC 33270] gi|158446644|gb|EDP23639.1| hypothetical protein PEPMIC_01444 [Parvimonas micra ATCC 33270] Length = 450 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 158/305 (51%), Gaps = 18/305 (5%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F + S KL+ + + +S + +D +RE ++ L+ SD+ V ++ + + + Sbjct: 6 FENLSEKLQGALNKLRGKGKLSEKDVDLAMRE-VKLALLESDVNFKVVKQFISNVKERAI 64 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K+V Q+V+ V+E + ++ + D S+ P VI++ G+ G GKTT GK Sbjct: 65 GKEVMESLTPAQQVIKIVNEELTALMGKKEEKIQID-SNPPTVIMLCGLQGAGKTTHAGK 123 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L++ + +L A D +R AAI QL++ + D +A E+ K A Sbjct: 124 LARYFLKQNKRPLLVACDIYRPAAIKQLQVVGKSVDVPVFTIDDCKDVTKIANESIKFAN 183 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + D++I+DTAGRLH + +LM + K I+ +P +L V+D+ TGQ+A+ E Sbjct: 184 SNSKDIVILDTAGRLHIDDVLMEEL-KSIK-----SSVSPIEILLVVDSMTGQDAVNVAE 237 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+IMTK+DG ARGG + I P+ F+GVGE ++DLE F ++ I Sbjct: 238 SFNNELDITGVIMTKLDGDARGGAALSIKAITGKPIKFIGVGEKLDDLEQFYPDRMASRI 297 Query: 311 TGCLD 315 G D Sbjct: 298 LGMGD 302 >gi|87311715|ref|ZP_01093831.1| signal recognition particle protein [Blastopirellula marina DSM 3645] gi|87285609|gb|EAQ77527.1| signal recognition particle protein [Blastopirellula marina DSM 3645] Length = 481 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 94/300 (31%), Positives = 152/300 (50%), Gaps = 20/300 (6%) Query: 22 ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ----KIVEELLTKRYAK 77 A SL+ K +TD + DG+R +E+ +I +D+ V Q ++ EE + ++ K Sbjct: 12 ALKSLRGKGKLTDA----NMRDGLRM-VEEAMIEADVAYPVVQDFMARVSEEAMGQKVLK 66 Query: 78 DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV--ILVVGVNGVGKTTVIGKLSKKM 135 ++ + L V +H+ L+ L P + V +++ G+ G GKTT GKL++ + Sbjct: 67 SLNPDQQLVGV---VHEQLIQLLGPVDPSLHLEKDVTVLMMCGLQGAGKTTTCGKLARLI 123 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 G K +L A D R AA+ QL + + A E SD A+ A K A+ ++ Sbjct: 124 GTEGKKALLVAADLQRPAAVQQLHVVGESVGAKVYSEENASDPIAVCQNAVKFARENGIN 183 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 V+I+DTAGRL + LM + + R + P V+D TGQ+A+ + F+ Sbjct: 184 VVILDTAGRLAIDEELMEQLKTIDRKI------GPDQCFLVVDGMTGQDAVNSAKAFNDA 237 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G+IMTK+DG ARGG L+ + +P+ F+G+ E ++ LEPF A + I G D Sbjct: 238 LELDGVIMTKLDGDARGGALLSVKHVTGVPIKFIGISEHMDGLEPFYADRMAGRILGMGD 297 >gi|256810320|ref|YP_003127689.1| GTP-binding signal recognition particle SRP54 G- domain protein [Methanocaldococcus fervens AG86] gi|256793520|gb|ACV24189.1| GTP-binding signal recognition particle SRP54 G- domain protein [Methanocaldococcus fervens AG86] Length = 451 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 96/285 (33%), Positives = 152/285 (53%), Gaps = 18/285 (6%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----LTKRYAKDVSV-QRVLYDVSELIH 93 ++L V ++++ LI++D+ V + K+ +E+ L + K +S + ++ V E + Sbjct: 24 KKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALKEETPKGLSKKEHIIKIVYEELV 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 K+L +K + +VIL+VG+ G GKTT KL++ + GLK L A DT+R A Sbjct: 84 KLLGEEAKKLELS-PKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPA 142 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSIL 211 A +QLK A++ E + + E K+ + KK DVLIIDTAGR L Sbjct: 143 AYEQLKQLAEKIHVPLYGDETKTKSPV---EIVKEGMEKFKKADVLIIDTAGRHKEERGL 199 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG-LIMTKMDGTA 270 + + ++ V P ++ V+D T GQ A Q + F G G +I+TK+DG+A Sbjct: 200 LEEMKQIKEVTN------PDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSA 253 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +GGG + V P+ F+G+GEGI+DLEPF K F + + G D Sbjct: 254 KGGGALSAVAETGAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGD 298 >gi|227329617|ref|ZP_03833641.1| signal recognition particle protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 453 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/209 (37%), Positives = 117/209 (55%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT +GKL K + + KV++ + D +R AAI QL+ A++ Sbjct: 97 AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S++ A+ A + A+ K DVL++DTAGRLH + +M I ++ +K Sbjct: 157 VDFFPSDVQEKPLAIVQRALQHAKLKFYDVLLVDTAGRLHVDDAMMDEIKQVHAAIK--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA TGQ+A + F+ TG+I+TK+DG ARGG + I P+ Sbjct: 214 ---PVETLFVVDAMTGQDAANTAKAFNEALPLTGVILTKIDGDARGGAALSIRHITGKPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 FLGVGE LEPF + ++ I G D Sbjct: 271 KFLGVGEKTEALEPFYPERVASRILGMGD 299 >gi|268593126|ref|ZP_06127347.1| signal recognition particle protein [Providencia rettgeri DSM 1131] gi|291311398|gb|EFE51851.1| signal recognition particle protein [Providencia rettgeri DSM 1131] Length = 453 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 99/307 (32%), Positives = 164/307 (53%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL D+ ++E L ++ L+ +D+ + V ++ ++++ Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTDENIKETLREVRMALLEADVALPVVREFIQKVKENAVG 61 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-------PHVILVVGVNGVGKTTVIG 129 +DV+ + L E I + L++ D +H+ P V+L+ G+ G GKTT + Sbjct: 62 QDVN--KSLTPGQEFIKIVQNELTRAM-GDENHQLNLSAQPPAVVLMAGLQGAGKTTSVA 118 Query: 130 KLSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL K + + K +L + D +R AAI QL+ A+ DF SE+ A + +A K Sbjct: 119 KLGKLLKEKQKKKVLVVSADVYRPAAIKQLETLAESVGIDFFPSEVQEKPAVIVQKALKH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 AQ + DVL++DTAGRLH + +M I ++ R++K P L V+DA TGQ+A Sbjct: 179 AQLQFYDVLLVDTAGRLHVDEAMMEEIQEVHRIIK------PVETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F+ TG+++TK+DG ARGG + I P+ FLGVGE + LEPF + ++ Sbjct: 233 AKAFNEALPLTGVVLTKVDGDARGGAALSIRAITGKPIKFLGVGEKTDALEPFHPERVAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|157148123|ref|YP_001455442.1| signal recognition particle protein [Citrobacter koseri ATCC BAA-895] gi|157085328|gb|ABV15006.1| hypothetical protein CKO_03933 [Citrobacter koseri ATCC BAA-895] Length = 453 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 97/308 (31%), Positives = 157/308 (50%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V+E L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V + + ++ N + P V+L+ G+ G GKTT +GKL Sbjct: 62 HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + KV++ + D +R AAI QL+ A + DF S++G + A K+A+ Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVDVDFFPSDVGQKPVDIVNAALKEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K DVL++DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF + Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|254805664|ref|YP_003083885.1| signal recognition particle protein [Neisseria meningitidis alpha14] gi|254669206|emb|CBA07997.1| signal recognition particle protein [Neisseria meningitidis alpha14] Length = 456 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 153/286 (53%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + K ++V+ Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNKALT 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + S P ++L+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGKENKTLDLSVSP-PAIVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA GQ+A+ + F+ TG+++TKMDG Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGIVLTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299 >gi|297740127|emb|CBI30309.3| unnamed protein product [Vitis vinifera] Length = 567 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 96/309 (31%), Positives = 158/309 (51%), Gaps = 23/309 (7%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----- 70 +LT G + KLK ++++ + + +R+ + L+ +D+ + V ++ V+ + Sbjct: 83 QLTSGLEAAWTKLKG--EEVLTKENIVEPMRD-IRRALLEADVSLPVVRRFVQAVSEQAV 139 Query: 71 ---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126 L + D + ++++D EL+ M +S+ F+ P VIL+ G+ GVGKTT Sbjct: 140 GVGLIRGVKPDQQLVKIVHD--ELVKLMGGEVSE---LVFAKSGPTVILLAGLQGVGKTT 194 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 V KL+ + G ML AGD +R AAIDQL I ++ + + +A + Sbjct: 195 VCAKLAFYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVDVPVYTAGTEVKPSQIAKQGL 254 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 ++A+ K +DV+I+DTAGRL + +M + + R + P VL V+DA TGQ A Sbjct: 255 EEARKKNIDVVIVDTAGRLQIDKAMMDELKDVKRAIN------PTEVLLVVDAMTGQEAA 308 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 V F+ G TG I+TK+DG +RGG + + P+ +G GE + DLEPF Sbjct: 309 ALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRM 368 Query: 307 SAVITGCLD 315 + I G D Sbjct: 369 AGRILGMGD 377 >gi|332976619|gb|EGK13460.1| signal recognition particle protein [Desmospora sp. 8437] Length = 449 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/268 (31%), Positives = 140/268 (52%), Gaps = 13/268 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + V ++ + ++V Q+V+ V+E + ++ + N Sbjct: 39 LLEADVNYKVVKDFVSKVRERAVGQEVLKSLTPGQQVIKVVNEELSSLMGGTQEKLN--L 96 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 + +P VIL+VG+ G GKTT GKL + + +L AGD +R AAI QL++ D+ Sbjct: 97 TSKPSVILMVGLQGAGKTTTTGKLGRFLKKQNRHPLLVAGDVYRPAAIRQLEVLGDQVEL 156 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +A + +A+ + D ++IDTAGRLH + +M + K IR + Sbjct: 157 PVFSMGDQESPVRIAVDGVAKAKEEGHDTVLIDTAGRLHIDETMMGEL-KAIR-----EK 210 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+DA TGQ+A+ E F+ G TG+I+TK+DG RGG + + PV Sbjct: 211 VQPDEILLVVDAMTGQDAVNVAESFNRELGLTGVILTKLDGDTRGGAALSVKSVTDCPVK 270 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ LEPF + ++ I G D Sbjct: 271 FVGMGEKVDALEPFHPERMASRILGMGD 298 >gi|229822802|ref|ZP_04448872.1| hypothetical protein GCWU000282_00091 [Catonella morbi ATCC 51271] gi|229787615|gb|EEP23729.1| hypothetical protein GCWU000282_00091 [Catonella morbi ATCC 51271] Length = 491 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 100/308 (32%), Positives = 157/308 (50%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F S +L+ I+ I IS L +RE + L+ +D+ V + V+ + + Sbjct: 3 FEGLSERLQNAISGIGAGGTISEADLRQMMRE-IRLALLEADVNFQVVKSFVKTVNERAL 61 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 DV Q+V+ V E + ++ P N+ + P +I++ G+ G GKTT +GK Sbjct: 62 GSDVLASLSPAQQVVKIVDEELTALMGGEQVPLNF-ATQPPTIIMMAGLQGAGKTTTVGK 120 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187 L+K + G K +L AGD +R AAI QL+ + D +GSD + +A +A Sbjct: 121 LAKYVQAQGKKRPLLVAGDIYRPAAIAQLQTIGQQLGFDVFS--LGSDVSPVEIARQAVA 178 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 QA+ + DV++IDTAGRLH + LM + ++ + PH +L +DA TGQ+A+ Sbjct: 179 QARIQGNDVVLIDTAGRLHVDETLMEELRQIKAAVN------PHEILLTVDAMTGQDAVN 232 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+I+TK+DG RGG + I P+ F G GE ++ LEPF S Sbjct: 233 VAKAFNDSLDITGVIITKLDGDTRGGAALSIRSIIDRPIKFTGQGEKLDALEPFYPDRMS 292 Query: 308 AVITGCLD 315 + I G D Sbjct: 293 SRILGMGD 300 >gi|156932848|ref|YP_001436764.1| signal recognition particle protein [Cronobacter sakazakii ATCC BAA-894] gi|156531102|gb|ABU75928.1| hypothetical protein ESA_00645 [Cronobacter sakazakii ATCC BAA-894] Length = 453 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 156/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D ++E L ++ L+ +D+ + V + + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V + + ++ N + P V+L+ G+ G GKTT +GKL Sbjct: 62 HEVNKSLTPGQEFVKIVRNELVAAMGEENQSLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + KV++ + D +R AAI QL+ A + DF S++G + A K+A+ Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVGVDFFPSDVGQKPVDIVNAALKEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVL++DTAGRLH + +M I ++ +K P L V+DA TGQ+A + Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF ++ I Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|210622533|ref|ZP_03293226.1| hypothetical protein CLOHIR_01174 [Clostridium hiranonis DSM 13275] gi|210154168|gb|EEA85174.1| hypothetical protein CLOHIR_01174 [Clostridium hiranonis DSM 13275] Length = 453 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 111/208 (53%), Gaps = 6/208 (2%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P VI++VG+ G GKTT GKL G K +L A D +R AAI QL++ ++ Sbjct: 98 SKPPTVIMMVGLQGAGKTTTAGKLGGYFKKQGKKPLLVACDVYRPAAIKQLQVVGEKLDI 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + +A AQ D++IIDTAGRLH + +LM + K I+ R Sbjct: 158 PVFAMGDKENPVNIAKAGLSHAQKNGNDMVIIDTAGRLHVDEVLMEEL-KNIKSEVR--- 213 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 PH +L +DA TGQ+A+ E F+ G G+++TK+DG RGG + I K P+ Sbjct: 214 --PHEILLTVDAMTGQDAVNVAESFNDALGIDGVVLTKLDGDTRGGAALSIRAVTKKPIK 271 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE + DLEPF ++ I G D Sbjct: 272 FIGMGEKLEDLEPFHPDRMASRILGMGD 299 >gi|149377073|ref|ZP_01894823.1| signal recognition particle protein [Marinobacter algicola DG893] gi|149358609|gb|EDM47081.1| signal recognition particle protein [Marinobacter algicola DG893] Length = 462 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 91/299 (30%), Positives = 150/299 (50%), Gaps = 38/299 (12%) Query: 37 SSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVS------------- 80 +R DD ++E L ++ L+ +D+ + V + +E + + ++V Sbjct: 19 QARLTDDNIKETLREVRMALLEADVALPVVKAFIEGVRQRAVGQEVQRSLSPGQVFVKVV 78 Query: 81 ---VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137 ++RV+ D +E ++ + P P VI++ G+ G GKTT + KLS+ + + Sbjct: 79 QQELERVMGDGNESLNLAVQP------------PAVIMMAGLQGAGKTTTVAKLSRFLKE 126 Query: 138 AGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196 K V++ + D +R AAI QL+ A +F S D +A A A+ K +DV Sbjct: 127 RQKKSVLVVSADVYRPAAIRQLETLAGEVGVEFFPSSEDQDPVDIANGAMDAARKKHIDV 186 Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256 +I+DTAGRLH + +M IG++ + + P L V+DA TGQ+A + F+ Sbjct: 187 VILDTAGRLHVDEQMMGEIGRLHKAVN------PVETLFVVDAMTGQDAANTAKAFNDAL 240 Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TG+++TK DG ARGG + + P+ FLGVGE + LEPF ++ I G D Sbjct: 241 PLTGVVLTKTDGDARGGAALSVRHITGKPIKFLGVGEKSDALEPFHPDRVASRILGMGD 299 >gi|218555190|ref|YP_002388103.1| signal recognition particle protein [Escherichia coli IAI1] gi|218361958|emb|CAQ99559.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Escherichia coli IAI1] Length = 453 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 158/308 (51%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V++ L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V + + ++ N + P V+L+ G+ G GKTT +GKL Sbjct: 62 HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTCVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A+ Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K DVL++DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF + Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|325203414|gb|ADY98867.1| signal recognition particle protein [Neisseria meningitidis M01-240355] Length = 456 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 153/286 (53%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + K ++V+ Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALT 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + S P ++L+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGRENKTLDLSVSP-PAIVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA GQ+A+ + F+ TG+++TKMDG Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299 >gi|220928159|ref|YP_002505068.1| signal recognition particle protein [Clostridium cellulolyticum H10] gi|219998487|gb|ACL75088.1| signal recognition particle protein [Clostridium cellulolyticum H10] Length = 448 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 158/304 (51%), Gaps = 16/304 (5%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F S KL++ I I +S + + D +RE ++ L+ +D+ V ++ + ++ + Sbjct: 4 FEGLSGKLQDTIKKIRGQGRVSEKDVKDMMRE-IKLALLEADVNFKVVKEFISKISERAV 62 Query: 76 AKDVSVQRVL-YDVSELIHKMLMPL--SKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKL 131 DV V +++H+ L+ L + F+ +P V ++ G+ G GKTT GKL Sbjct: 63 GADVLESLTPGQQVVKIVHEELIELLGREQSKVTFAPKPPTVFMMAGLQGAGKTTTAGKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + G +L A D +R AAI QL++ ++ + E + +A EA K A+ Sbjct: 123 ANLLRKQGKNPLLVACDVYRPAAIKQLQVLGNQLNIPVFTLENNQNPVQIAKEAVKFAEM 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K+ D++I+DTAGRLH + LM + + +K PH +L V+D+ TGQ+A+ + Sbjct: 183 KQNDLVILDTAGRLHIDEKLMDELLNIKNTVK------PHEILLVVDSMTGQDAVNVSKT 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G G+++TK+DG RGG + + P+ F +GE +ND+EPF ++ I Sbjct: 237 FNEKLGIDGVVLTKLDGDTRGGAALSVKSVTGKPIKFAAMGEKLNDIEPFFPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|313888484|ref|ZP_07822151.1| signal recognition particle protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845513|gb|EFR32907.1| signal recognition particle protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 445 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 97/307 (31%), Positives = 162/307 (52%), Gaps = 23/307 (7%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F S S KL+ + ++ +S + +D +RE ++ L+ +D+ V + V+ + + Sbjct: 3 FESLSDKLQNTLQNLRGKGKLSEKDIDAAMRE-VKLALLEADVNFRVVKDFVKTVKERAL 61 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K+V Q+V+ V+E + ++ + DFS +P VI++ G+ G GKTT GK Sbjct: 62 GKEVLESLTPGQQVIKIVNEELTSLMG--TSEVKIDFSKKPTVIMMCGLQGAGKTTTSGK 119 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQ 188 L+ K+ G + +L A D +R AAI QL++ + S D +G + ++ A + Sbjct: 120 LANKLKKDGKRPLLVACDVYRPAAIKQLQVVGE--SVDTPVFTMGDKISPVDISKAALEH 177 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ DV+IIDTAGRLH + LM + + L+ P VL VLDA TGQ+A+ Sbjct: 178 AKKNGNDVVIIDTAGRLHIDEALMKELQDIHEALE------PSEVLLVLDAMTGQDAVNV 231 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F + TG+I+TK+DG ARGG + I +P+ F+ GE ++++E F ++ Sbjct: 232 ADTFDDMLKLTGVILTKLDGDARGGAALSIRSVTDVPIKFIASGEKMDNIEVFHPDRMAS 291 Query: 309 VITGCLD 315 I G D Sbjct: 292 RILGMGD 298 >gi|170684039|ref|YP_001744793.1| signal recognition particle protein [Escherichia coli SMS-3-5] gi|170521757|gb|ACB19935.1| signal recognition particle protein [Escherichia coli SMS-3-5] Length = 453 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 158/308 (51%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V++ L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V + + ++ N + P V+L+ G+ G GKTT +GKL Sbjct: 62 HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A+ Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K DVL++DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF + Sbjct: 232 TAKAFNEALSLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|325973669|ref|YP_004250733.1| signal recognition particle-docking protein FtsY [Mycoplasma suis str. Illinois] gi|325990112|ref|YP_004249811.1| cell division protein FtsY [Mycoplasma suis KI3806] gi|323575197|emb|CBZ40862.1| Cell division protein FtsY [Mycoplasma suis] gi|323652271|gb|ADX98353.1| signal recognition particle-docking protein FtsY [Mycoplasma suis str. Illinois] Length = 317 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 83/272 (30%), Positives = 146/272 (53%), Gaps = 15/272 (5%) Query: 42 DDGVREELEDLLIRSDIGVAVAQKIVEEL---LTKRYAKDVSVQRVLYDVSELI------ 92 ++ ++ + ++LI+ D + +A+++ E L K + D+SV + +S LI Sbjct: 33 EEKIKSSILEMLIKLDFQLELAKEVTNETIEKLKKLNSIDISVIKENL-ISSLIECYNSK 91 Query: 93 HKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDT 149 ++ + FN + S + +V +VG NGVGKT+ I KL K + K++L AGDT Sbjct: 92 NESSKNVEDNFNLNIVSDKTNVFFIVGSNGVGKTSSIAKLVYFLKKENYNKKILLVAGDT 151 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+ A++QL I A+R + + V +L Y K+ + D++I D++GR +NN Sbjct: 152 FRAGAVEQLSILAERLNVEIVTPREKETVNSLIYRVLKEMS--RYDLIIFDSSGRQYNNQ 209 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 L++ I K +++ ++ P L VLD+T G+ + +V+ + TG+I+TKMD T Sbjct: 210 KLISEIQKNFKLVHKMLNRDPEETLLVLDSTLGKFSFEEVKKIFNILPITGIILTKMDHT 269 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 RGG + + P+ F+ GE D++PF Sbjct: 270 VRGGVIYNLKTEFPTPIKFICYGEKEQDIQPF 301 >gi|293398062|ref|ZP_06642267.1| signal recognition particle protein [Neisseria gonorrhoeae F62] gi|291611325|gb|EFF40395.1| signal recognition particle protein [Neisseria gonorrhoeae F62] Length = 456 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 87/283 (30%), Positives = 152/283 (53%), Gaps = 16/283 (5%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + K ++V+ Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVSLPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALV 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + S P +IL+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGKENKTLDLSVSP-PAIILMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 I + V+ P L V+DA GQ+A+ + F+ G+++TKMDG +RG Sbjct: 203 NEIKALHAVVN------PVETLFVIDAMLGQDAVNTAQAFNEALPLNGVVLTKMDGDSRG 256 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 257 GAALSVRHVTGKPIKFIGVGEKINSLEPFHPDRLASRILGMGD 299 >gi|319779087|ref|YP_004130000.1| Signal recognition particle, subunit Ffh SRP54 [Taylorella equigenitalis MCE9] gi|317109111|gb|ADU91857.1| Signal recognition particle, subunit Ffh SRP54 [Taylorella equigenitalis MCE9] Length = 471 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 96/287 (33%), Positives = 144/287 (50%), Gaps = 25/287 (8%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ-RVLYDVSELIHKMLMPL------S 100 E+ LI +D+ + V + +EE+ +K +DV+ + ++HK L L Sbjct: 33 EIRMALIEADVALPVVKAFIEEVKSKAMGQDVATSLNPGQALVGIVHKELTALMGGDLGE 92 Query: 101 KPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL-----------KVMLAAGD 148 + F S P VIL+ G+ G GKTT GKLS+ +S L KV++ + D Sbjct: 93 QASQLSFASQPPAVILMAGLQGAGKTTTTGKLSRLISKGLLPSGNLKKHPPKKVLVVSAD 152 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 +R AAIDQLK A + S DF S +A A A+ + DVLI+DTAGRL + Sbjct: 153 VYRPAAIDQLKSVAQQASVDFFASSPDQKPIEIARAALDHAKRQFYDVLIVDTAGRLGID 212 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 + +M I ++ + L P L V+DA GQ+A+ + F TG+++TKMDG Sbjct: 213 TAMMNEIRELHQFLN------PVETLFVVDAMQGQDAVNVAKAFAEALPLTGVVLTKMDG 266 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ARGG + + P+ F+GV E ++ LEPF + + I G D Sbjct: 267 DARGGAALSVRHVTGKPLKFIGVSEKLDGLEPFHPERMAQRILGMGD 313 >gi|320535248|ref|ZP_08035372.1| signal recognition particle-docking protein FtsY [Treponema phagedenis F0421] gi|320147901|gb|EFW39393.1| signal recognition particle-docking protein FtsY [Treponema phagedenis F0421] Length = 292 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 99/286 (34%), Positives = 151/286 (52%), Gaps = 6/286 (2%) Query: 24 TSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82 T + EG+ + LDD E L D L+ D+G A I E LL + K + Sbjct: 2 TKRRFSEGLKRLFGMHINLDDSFFENLTDSLVEGDVGAKTAFDI-ETLLRQECKKQKAET 60 Query: 83 RVLYDVSELIHKMLMPLSKPFNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GL 140 + D+ ++ +L PL K + + V L++GVNGVGKTT I K++ + + Sbjct: 61 K--DDIIRILTGILTPLIKTVTFMPEEKKTSVYLILGVNGVGKTTSIAKIANYYNKILTM 118 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 ++LAA DTFR+AAI+QL+ V + G D A+ ++A + +A+ +++ D Sbjct: 119 PIVLAAADTFRAAAIEQLQYHGKALGLRVVAHQHGGDPGAVVFDAAEAIKAQGGGLVLAD 178 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRLH L+ +GK+ ++ + + + VLDATTGQNA RQ E FH Sbjct: 179 TAGRLHTKENLIRELGKIDKIAESKADTGCYKKILVLDATTGQNAFRQAEAFHEAISIDA 238 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +++TK D TA+GG I I IP+ F+G GE +D+ PF K+F Sbjct: 239 IMLTKYDSTAKGGNAITISKELNIPMLFIGTGEQYSDIAPFDTKEF 284 >gi|255529983|ref|YP_003090355.1| signal recognition particle protein [Pedobacter heparinus DSM 2366] gi|255342967|gb|ACU02293.1| signal recognition particle protein [Pedobacter heparinus DSM 2366] Length = 446 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 73/211 (34%), Positives = 114/211 (54%), Gaps = 6/211 (2%) Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 D P +IL+ G+NG GKTT GKL+ + + G K +L AGD +R AA+DQL+I ++ Sbjct: 93 LDLKTNPTIILIAGLNGAGKTTFTGKLANFLKNKGKKPLLVAGDVYRPAAVDQLQILGEQ 152 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + D +A E + + ++ +V+IIDTAGRL + +M I + K Sbjct: 153 IGVPVYANTASKDPVGIALEGIAEGKKQQNNVIIIDTAGRLAIDEQMMDEIAAVKESTK- 211 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 PH +L V+DA TGQ+A+ + F+ TG+++TK+DG RGG + I Sbjct: 212 -----PHEILFVVDAMTGQDAVNTAKAFNDRLDFTGVVLTKLDGDTRGGAALSIKSVVNK 266 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + L+ F + ++ I G D Sbjct: 267 PIKFIGTGEKMEALDVFYPERMASRILGMGD 297 >gi|152991247|ref|YP_001356969.1| signal recognition particle protein [Nitratiruptor sp. SB155-2] gi|151423108|dbj|BAF70612.1| signal recognition particle protein [Nitratiruptor sp. SB155-2] Length = 452 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 98/279 (35%), Positives = 148/279 (53%), Gaps = 27/279 (9%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTK--------RYAKDVSVQRVLYDVSELIHKMLMPL 99 EL+ L++SD V K+V+ELL K +D +Q + +++E+ + P Sbjct: 31 ELKKSLLKSD----VHHKVVKELLQKVELDTKAAGIGRDTFLQALQKNLTEI---LTAPG 83 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 +K S P V+L+ G+ G GKTT GKL+ + G KV+L A D R AA++QL+ Sbjct: 84 AKQGFVYASKPPTVVLMTGLQGSGKTTTSGKLANYLKLRGKKVLLVAADLQRLAAVEQLR 143 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 A + DF + D + +A K A+ K DV+IIDTAGRL + LM Sbjct: 144 QIASQIEVDFFGEDDQKDPVKVVNDALKLAREKLYDVVIIDTAGRLAIDEALM------- 196 Query: 220 RVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 LK++ A P V V D+ TGQ+A+R F+ G TG+I+TK DG A+GG + + Sbjct: 197 EELKKVKEAAHPDEVFYVADSLTGQDAVRSAAKFNEDVGITGVILTKYDGDAKGG--VAL 254 Query: 279 VVTHKI--PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + H+I P+ F+G GE + DLE F+ + + + G D Sbjct: 255 SLAHQIGVPLRFIGTGEKMPDLEVFIPERITNRLMGAGD 293 >gi|110833658|ref|YP_692517.1| signal recognition particle protein Ffh [Alcanivorax borkumensis SK2] gi|110646769|emb|CAL16245.1| signal recognition particle protein Ffh [Alcanivorax borkumensis SK2] Length = 473 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/292 (31%), Positives = 153/292 (52%), Gaps = 34/292 (11%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSE 90 +D +R+ L ++ L+ +D+ + V ++ VE++ K ++V + +++ D E Sbjct: 24 EDNIRDTLREVRKALLEADVALPVVKEFVEQVKEKALGQEVLQSLNPGQAFVKIVND--E 81 Query: 91 LIHKM------LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVM 143 L+H M L +KP P +IL+ G+ G GKTT + KL++ + + KVM Sbjct: 82 LVHTMGDANDGLDLATKP--------PAIILMAGLQGAGKTTSVAKLARFLQEREKKKVM 133 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 + + D +R AAI+QLK A F S D +A A +A+ + +DVLI+DTAG Sbjct: 134 VVSADIYRPAAIEQLKTLAGEVETHFFPSSSDQDPVDIANAALDEARRRYMDVLIVDTAG 193 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 RLH + +M+ I ++ + +P L V+DA TGQ+A + F+ TG+I+ Sbjct: 194 RLHVDEDMMSEIKRLHGAI------SPVETLFVVDAMTGQDAANTAQAFNEALPLTGVIL 247 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TK DG +RGG + + P+ F+G+GE + LEPF ++ I G D Sbjct: 248 TKADGDSRGGAALSVRQLTGKPIKFIGMGEKTDALEPFHPDRIASRILGMGD 299 >gi|119510257|ref|ZP_01629394.1| signal recognition particle protein [Nodularia spumigena CCY9414] gi|119465106|gb|EAW46006.1| signal recognition particle protein [Nodularia spumigena CCY9414] Length = 490 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/289 (31%), Positives = 147/289 (50%), Gaps = 17/289 (5%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--EL 91 D IS + D +RE + L+ +D+ + V + + E+ TK DV V V D ++ Sbjct: 20 DKISQSNIQDALRE-VRRALLEADVNLQVVKDFISEVETKAQGADV-VAGVRPDQQFIKI 77 Query: 92 IHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 +H L+ + N + +P ++L+ G+ G GKTT KL+ + +L A D Sbjct: 78 VHDELVRVMGAENVPLAETEEKPTIVLMAGLQGTGKTTATAKLALHLRKLERSCLLVATD 137 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLH 206 +R AAIDQL + D E+GSDA +A + ++A+A+ + +IIDTAGRL Sbjct: 138 VYRPAAIDQLVTLGKQI--DVPVFELGSDADPVEIARQGVERAKAEGFNTVIIDTAGRLQ 195 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + +M + ++ ++ PH L V+D+ TGQ A FH G TG I+TK+ Sbjct: 196 IDEDMMGELARIKATVQ------PHETLLVVDSMTGQEAANLTRTFHDKIGITGAILTKL 249 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG RGG + + P+ F+GVGE + L+PF + ++ I G D Sbjct: 250 DGDTRGGAALSVRQISGAPIKFVGVGEKVEALQPFYPERMASRILGMGD 298 >gi|316975692|gb|EFV59096.1| signal recognition protein [Trichinella spiralis] Length = 492 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 86/272 (31%), Positives = 141/272 (51%), Gaps = 20/272 (7%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS--------VQRVLYDVSELIHKMLMPLSKPFN 104 L+ +D+ + + +++ E + ++ ++++ +QRV++ EL+ K++ P K Sbjct: 39 LLEADVNIRLVKQLRESVKSQINLEEMAAGMNKRRLIQRVVF--QELV-KLVDPGVK--Q 93 Query: 105 WDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 W + RP+VI+ VG+ G GKTT KL+ G+K L DTFR+ A DQLK A Sbjct: 94 WQPTKGRPNVIMFVGLQGCGKTTTCTKLAYYYQKRGMKTCLICADTFRAGAFDQLKQNAT 153 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + F S D +A E ++ + + +++I+DT+GR L +M++V Sbjct: 154 KARIPFYGSYTEMDPVVIAAEGVEKFKQENFEIIIVDTSGRHKQEESLFE---EMLQVAN 210 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 + P +V+ V+DA+ GQ Q FH +I+TK+DG ARGGG + V Sbjct: 211 TVQPD---NVIYVMDASIGQACEAQARAFHEKVDVASVIVTKLDGHARGGGALSAVAATG 267 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE I+D EPF K F + G D Sbjct: 268 SPIIFIGTGEHIDDFEPFKVKPFVQKLLGMGD 299 >gi|154290868|ref|XP_001546023.1| hypothetical protein BC1G_15366 [Botryotinia fuckeliana B05.10] gi|150847185|gb|EDN22378.1| hypothetical protein BC1G_15366 [Botryotinia fuckeliana B05.10] Length = 311 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 90/301 (29%), Positives = 149/301 (49%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-- 80 ++ +TD+ S LD DG+ +E+ L+ +D+ V + + + + K+++ Sbjct: 9 RINAAVTDLTRSSNLDEKAFDGMIKEICSALLEADVNVKLVGNLRKSIKASVNFKELAPA 68 Query: 81 ------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 +Q+ +YD EL+ K++ P ++PF + ++I+ VG+ G GKTT KL++ Sbjct: 69 VNKKKVIQKAVYD--ELV-KLVDPHAEPFKPK-KGKANIIMFVGLQGAGKTTTCTKLARW 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G K L DTFR+ A DQLK A + + S +D A +A E + + +K Sbjct: 125 YQSRGFKACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAKEGVDKFKKEKF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 +++I+DT+GR L + + +K P + V+DA+ GQ A Q + F Sbjct: 185 EIIIVDTSGRHRQEDALFQEMVDIQTAVK------PDQTVMVMDASIGQQAEAQSKAFKE 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V P+ F+G GE + DLE F F + + G Sbjct: 239 TADFGAIIITKTDGHASGGGAISAVAATHTPIIFIGTGEHMLDLEKFAPTQFVSKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|331006945|ref|ZP_08330190.1| Signal recognition particle, subunit Ffh SRP54 [gamma proteobacterium IMCC1989] gi|330419265|gb|EGG93686.1| Signal recognition particle, subunit Ffh SRP54 [gamma proteobacterium IMCC1989] Length = 469 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 160/305 (52%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + I RL +++ L+D+ L+ +D+ + V + VE++ + Sbjct: 2 FQNLTDRLSKSLKKISGKGRLSHANIQDALKDVRKALLEADVALPVVKGFVEKVRKRAVG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V+ Q+ + V + +M+ ++ N + P VIL+ G+ G GKTT + KL Sbjct: 62 QEVARSLNPSQQFIKVVQSELTEMMGEANETLNL-AAQPPAVILMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KVM+ + D +R AAI QL+ A + A F S +A EA A+ Sbjct: 121 AKYLKEREKKKVMVVSADVYRPAAIQQLETLAGQVEAVFHPSSTDQKPIDIAQEAISAAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + +DV+I+DTAGRL + LMA I + + + P L V+DA GQ+A+ + Sbjct: 181 KQHLDVVIVDTAGRLAIDDALMAEIQGLQKAIN------PIETLFVIDAMIGQDAVNTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK DG ARGG + + T P+ FLG+GE ++ LEPF ++ I Sbjct: 235 AFNDALPLTGVILTKADGDARGGAALSVRATTGKPIKFLGMGEKVDALEPFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|14520695|ref|NP_126170.1| signal recognition particle protein Srp54 [Pyrococcus abyssi GE5] gi|12230641|sp|Q9V1E8|SRP54_PYRAB RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|5457911|emb|CAB49401.1| srp54 signal recognition particle, subunit SRP54 [Pyrococcus abyssi GE5] Length = 443 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 91/279 (32%), Positives = 142/279 (50%), Gaps = 16/279 (5%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEEL----LTKRYAKDVSV-QRVLYDVSELIHKML 96 V+E + D+ LI++D+ V + K+ +E+ L ++ +S + ++ V E + K L Sbjct: 28 VKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEELTKFL 87 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 +KP + +P ++L+VGV G GKTT + KL++ G KV + DT+R A Sbjct: 88 GTEAKPI--EIKEKPTILLMVGVQGSGKTTTVAKLARHFQKRGYKVGVVCSDTWRPGAYH 145 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QLK D + DA LA E + +AK VD++I+DTAGR L+ + Sbjct: 146 QLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMR 205 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + +K PH V+ V+D T GQ A Q F +I+TK+D +A+GGG + Sbjct: 206 MISNEIK------PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGAL 259 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 V P+ F+G GE I+DLEPF F + + G D Sbjct: 260 SAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGD 298 >gi|260893271|ref|YP_003239368.1| signal recognition particle protein [Ammonifex degensii KC4] gi|260865412|gb|ACX52518.1| signal recognition particle protein [Ammonifex degensii KC4] Length = 445 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 79/205 (38%), Positives = 114/205 (55%), Gaps = 8/205 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P V+++VG+ G GKTT KL+ + G + +L A D +R AA+ QL++ ++ V Sbjct: 102 PTVVMLVGLQGSGKTTTAAKLALSLKKQGRRPLLVAADVYRPAAVKQLQVLGEQIQVP-V 160 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 S G + +A A +A K DV+IIDTAGRLH N LM + ++ +K P Sbjct: 161 WSRPG-NPVEIAASAMHEANHKGYDVVIIDTAGRLHINEELMQELEEIKARVK------P 213 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 H VL V+DA TGQ+A+ E FH G G+++TK+DG RGG + I P+ F+G Sbjct: 214 HEVLLVVDAMTGQDAVTVAETFHQRLGLDGVVLTKLDGDTRGGAALSIRAVTGCPIKFVG 273 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 VGE ++ LEPF + I G D Sbjct: 274 VGEKLDMLEPFHPDRMADRILGMGD 298 >gi|212712913|ref|ZP_03321041.1| hypothetical protein PROVALCAL_04010 [Providencia alcalifaciens DSM 30120] gi|212684458|gb|EEB43986.1| hypothetical protein PROVALCAL_04010 [Providencia alcalifaciens DSM 30120] Length = 453 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 162/306 (52%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL DD +++ L ++ L+ +D+ + V ++ ++++ Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTDDNIKDTLREVRMALLEADVALPVVREFIQKVKESAVG 61 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHRPHVILVVGVNGVGKTTVIGK 130 +DV+ + L E I + L++ + + P V+L+ G+ G GKTT + K Sbjct: 62 QDVN--KSLTPGQEFIKIVQNELTRAMGEENHQLNLSAQPPAVVLMAGLQGAGKTTSVAK 119 Query: 131 LSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + K +L + D +R AAI QL+ A+ DF SE+ AA+ +A K A Sbjct: 120 LGKLLKEKQKKKVLVVSADVYRPAAIKQLETLAEAVGVDFFPSEVQEKPAAIVQKALKHA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 Q + DVL++DTAGRLH + +M I ++ R++ P L V+DA TGQ+A Sbjct: 180 QLQFYDVLLVDTAGRLHVDEAMMEEIQEVHRIIN------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+++TK+DG ARGG + I P+ FLGVGE + LEPF + ++ Sbjct: 234 KAFNEALPLTGIVLTKVDGDARGGAALSIRAITGKPIKFLGVGEKTDALEPFHPERVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|59802021|ref|YP_208733.1| putative signal recognition particle protein [Neisseria gonorrhoeae FA 1090] gi|59718916|gb|AAW90321.1| putative signal recognition particle protein [Neisseria gonorrhoeae FA 1090] Length = 456 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 87/283 (30%), Positives = 152/283 (53%), Gaps = 16/283 (5%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + K ++V+ Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALV 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + S P +IL+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGKENKTLDLSVSP-PAIILMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 I + V+ P L V+DA GQ+A+ + F+ G+++TKMDG +RG Sbjct: 203 NEIKALHAVVN------PVETLFVIDAMLGQDAVNTAQAFNEALPLNGVVLTKMDGDSRG 256 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 257 GAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299 >gi|323454201|gb|EGB10071.1| hypothetical protein AURANDRAFT_36724 [Aureococcus anophagefferens] Length = 497 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 89/286 (31%), Positives = 141/286 (49%), Gaps = 13/286 (4%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVS 89 +IS LD +++ + L+ +D+ V V ++ + + T+ ++ S + + V Sbjct: 22 VISEEVLDKMLKD-IAAALLEADVNVRVVMELRKAIKTRANLEEESAGTNRRKMIQKAVV 80 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 E + ML P K P+VI+ VG+ G GKTT I K + G K + DT Sbjct: 81 EELAGMLDPGVKAHEMK-KGSPNVIMFVGLQGAGKTTTIAKFANHYLRKGFKCCMVCADT 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+ A DQL+ A + F S +D +A E Q +A+K +V+I+DT+GR + Sbjct: 140 FRAGAYDQLRQNATKLRCPFYGSYTEADPVRIAQEGVDQFKAEKYEVIIVDTSGRHKQET 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 L + ++ ++ P +V+ VLDAT GQ Q FH +++TK+DG Sbjct: 200 ALFEEMQEIRAAIE------PQNVIFVLDATQGQAVHEQASSFHEAIDIGSVVITKLDGH 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 A+GGG + V P+ FLG GE +D EPF A F + + G D Sbjct: 254 AKGGGALSAVAATGAPILFLGSGEHFDDFEPFNAHSFVSRLLGMGD 299 >gi|240017397|ref|ZP_04723937.1| putative signal recognition particle protein [Neisseria gonorrhoeae FA6140] Length = 456 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 87/283 (30%), Positives = 152/283 (53%), Gaps = 16/283 (5%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + K ++V+ Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALV 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + S P +IL+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGKENKTLDLSVSP-PAIILMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 I + V+ P L V+DA GQ+A+ + F+ G+++TKMDG +RG Sbjct: 203 NEIKALHAVVN------PVETLFVIDAMLGQDAVNTAQAFNEALPLNGVVLTKMDGDSRG 256 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 257 GAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299 >gi|309378177|emb|CBX23185.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 456 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 153/286 (53%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + K ++V+ Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNKALT 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + + P V+L+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGKENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ + +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQIGVDFFPSDTNQNPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA GQ+A+ + F+ TG+++TKMDG Sbjct: 203 NEIKAL---------HAAVSPVETLFVIDAMLGQDAVNTAQAFNEALPLTGIVLTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GVGE IN LEPF + I G D Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRIAGRILGMGD 299 >gi|313669229|ref|YP_004049513.1| signal recognition particle protein [Neisseria lactamica ST-640] gi|313006691|emb|CBN88159.1| signal recognition particle protein [Neisseria lactamica 020-06] Length = 456 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 153/286 (53%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + K ++V+ Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALV 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + + P V+L+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGKENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ + +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQNPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA GQ+A+ + F+ TG+++TKMDG Sbjct: 203 NEIKAL---------HAAVSPVETLFVIDAMLGQDAVNTAQAFNEALPLTGIVLTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GVGE IN LEPF + I G D Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRIAGRILGMGD 299 >gi|239999793|ref|ZP_04719717.1| Signal recognition particle signal sequence binding protein Ffh [Neisseria gonorrhoeae 35/02] gi|268595603|ref|ZP_06129770.1| signal recognition particle signal sequence binding protein Ffh [Neisseria gonorrhoeae 35/02] gi|268548992|gb|EEZ44410.1| signal recognition particle signal sequence binding protein Ffh [Neisseria gonorrhoeae 35/02] gi|317165080|gb|ADV08621.1| Signal recognition particle signal sequence binding protein Ffh [Neisseria gonorrhoeae TCDC-NG08107] Length = 456 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 87/283 (30%), Positives = 152/283 (53%), Gaps = 16/283 (5%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + K ++V+ Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVSLPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALV 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + S P +IL+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGKENKTLDLSVSP-PAIILMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 I + V+ P L V+DA GQ+A+ + F+ G+++TKMDG +RG Sbjct: 203 NEIKALHAVVN------PVETLFVIDAMLGQDAVNTAQAFNEALPLNGVVLTKMDGDSRG 256 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 257 GAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299 >gi|194099592|ref|YP_002002723.1| Signal recognition particle signal sequence binding protein Ffh [Neisseria gonorrhoeae NCCP11945] gi|240014949|ref|ZP_04721862.1| putative signal recognition particle protein [Neisseria gonorrhoeae DGI18] gi|240113818|ref|ZP_04728308.1| putative signal recognition particle protein [Neisseria gonorrhoeae MS11] gi|240116552|ref|ZP_04730614.1| putative signal recognition particle protein [Neisseria gonorrhoeae PID18] gi|240122018|ref|ZP_04734980.1| putative signal recognition particle protein [Neisseria gonorrhoeae PID24-1] gi|240124316|ref|ZP_04737272.1| putative signal recognition particle protein [Neisseria gonorrhoeae PID332] gi|240126527|ref|ZP_04739413.1| putative signal recognition particle protein [Neisseria gonorrhoeae SK-92-679] gi|254494575|ref|ZP_05107746.1| signal recognition particle protein [Neisseria gonorrhoeae 1291] gi|268599887|ref|ZP_06134054.1| signal recognition particle protein [Neisseria gonorrhoeae MS11] gi|268602222|ref|ZP_06136389.1| signal recognition particle protein [Neisseria gonorrhoeae PID18] gi|268682943|ref|ZP_06149805.1| signal recognition particle protein [Neisseria gonorrhoeae PID332] gi|268685108|ref|ZP_06151970.1| signal recognition particle protein [Neisseria gonorrhoeae SK-92-679] gi|19568856|gb|AAL91941.1|AF482013_1 signal recognition particle signal sequence binding protein Ffh [Neisseria gonorrhoeae] gi|193934882|gb|ACF30706.1| Signal recognition particle signal sequence binding protein Ffh [Neisseria gonorrhoeae NCCP11945] gi|226513615|gb|EEH62960.1| signal recognition particle protein [Neisseria gonorrhoeae 1291] gi|268584018|gb|EEZ48694.1| signal recognition particle protein [Neisseria gonorrhoeae MS11] gi|268586353|gb|EEZ51029.1| signal recognition particle protein [Neisseria gonorrhoeae PID18] gi|268623227|gb|EEZ55627.1| signal recognition particle protein [Neisseria gonorrhoeae PID332] gi|268625392|gb|EEZ57792.1| signal recognition particle protein [Neisseria gonorrhoeae SK-92-679] Length = 456 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 87/283 (30%), Positives = 152/283 (53%), Gaps = 16/283 (5%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + K ++V+ Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALV 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + S P +IL+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGKENKTLDLSVSP-PAIILMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 I + V+ P L V+DA GQ+A+ + F+ G+++TKMDG +RG Sbjct: 203 NEIKALHAVVN------PVETLFVIDAMLGQDAVNTAQAFNEALPLNGVVLTKMDGDSRG 256 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 257 GAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299 >gi|256545499|ref|ZP_05472861.1| signal recognition particle protein [Anaerococcus vaginalis ATCC 51170] gi|256398895|gb|EEU12510.1| signal recognition particle protein [Anaerococcus vaginalis ATCC 51170] Length = 445 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 96/304 (31%), Positives = 156/304 (51%), Gaps = 17/304 (5%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F++ S KL+E + + +L D V E++ L+ +D+ V ++ V+++ + Sbjct: 3 FSNLSEKLQESLGKLTGKGKLSEKDIDNVAREIKLSLLEADVNYKVVKEFVKKIKERAMG 62 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + ++ + S PHV+L+VG+ G GKTT GKL Sbjct: 63 QDVMESLTPGQTVIKIVNEELTNLMGKENSKLELKGST-PHVVLMVGLQGSGKTTHSGKL 121 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +K+ G +L A D +R AAI+QLK+ + + V + D A EA + A+ Sbjct: 122 VRKLKKEGRNPLLVALDVYRPAAIEQLKVVGKQAEVE-VFEKGKQDPVQTANEAKEYARR 180 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 DV+I+DTAGRL + LM + + + +K P +L V+DA GQ ++ + Sbjct: 181 NNNDVVIMDTAGRLQIDEDLMDELKNIKKAVK------PDEILLVVDAMVGQESVNVAKT 234 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F TG+I+TK+DG ARGG + I P+ F+G GE ++DLE F ++ I Sbjct: 235 FDEYLDITGVILTKLDGDARGGAALSIRQVVGKPIKFIGTGEKLDDLEAFHPDRMASRIL 294 Query: 312 GCLD 315 G D Sbjct: 295 GMGD 298 >gi|225025490|ref|ZP_03714682.1| hypothetical protein EIKCOROL_02390 [Eikenella corrodens ATCC 23834] gi|224941774|gb|EEG22983.1| hypothetical protein EIKCOROL_02390 [Eikenella corrodens ATCC 23834] Length = 453 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 77/206 (37%), Positives = 115/206 (55%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+L+ G+ G GKTT GKL++ + + K V+L + D +R AAI+QL++ A++ ADF Sbjct: 100 PAVVLMTGLQGAGKTTTAGKLARLLKEEQRKKVLLVSADVYRPAAIEQLRLLAEQVGADF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S++ A+A A A+ DVL++DTAGRL + ++MA I + + Sbjct: 160 FPSDVSQQPVAIAQAALDYAKKHFYDVLMVDTAGRLAVDEVMMAEIKALHEAVN------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+I+TKMDG ARGG + + P+ F+ Sbjct: 214 PVETLFVVDAMLGQDAVNTAQAFNEALPLTGVILTKMDGDARGGAALSVRHVTGKPIKFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I LEPF + I G D Sbjct: 274 GTGEKIGGLEPFHPDRIAGRILGMGD 299 >gi|170765626|ref|ZP_02900437.1| signal recognition particle protein [Escherichia albertii TW07627] gi|170124772|gb|EDS93703.1| signal recognition particle protein [Escherichia albertii TW07627] Length = 453 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 158/308 (51%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V++ L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V + + ++ N + P V+L+ G+ G GKTT +GKL Sbjct: 62 HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A+ Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K DVL++DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF + Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|3746964|gb|AAC64139.1| signal recognition particle 54 kDa subunit precursor [Arabidopsis thaliana] Length = 564 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 93/285 (32%), Positives = 145/285 (50%), Gaps = 23/285 (8%) Query: 43 DGVREELEDL---LIRSDIGVAVAQKIVEEL--------LTKRYAKDVSVQRVLYDVSEL 91 D + E + D+ L+ +D+ + V ++ V+ + + + D + ++++D EL Sbjct: 101 DNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVIRGVKPDQQLVKIVHD--EL 158 Query: 92 IHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + M +S+ F+ P VIL+ G+ GVGKTTV KL+ + G ML AGD + Sbjct: 159 VKLMGGEVSE---LQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVY 215 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAIDQL I ++ + A +A + K+A+ VDV+I+DTAGRL + Sbjct: 216 RPAAIDQLVILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKG 275 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 +M + + + L P VL V+DA TGQ A V F+ G TG I+TK+DG + Sbjct: 276 MMDELKDVKKFLN------PTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDS 329 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + + P+ +G GE + DLEPF + I G D Sbjct: 330 RGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGD 374 >gi|260439687|ref|ZP_05793503.1| Signal recognition particle signal sequence binding protein Ffh [Neisseria gonorrhoeae DGI2] gi|291042929|ref|ZP_06568670.1| signal recognition particle signal sequence binding protein Ffh [Neisseria gonorrhoeae DGI2] gi|291013363|gb|EFE05329.1| signal recognition particle signal sequence binding protein Ffh [Neisseria gonorrhoeae DGI2] Length = 456 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 87/283 (30%), Positives = 152/283 (53%), Gaps = 16/283 (5%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + K ++V+ Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKAIGQEVAGSLTPDQAFIGVVNQALV 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + S P +IL+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGKENKTLDLSVSP-PAIILMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 I + V+ P L V+DA GQ+A+ + F+ G+++TKMDG +RG Sbjct: 203 NEIKALHAVVN------PVETLFVIDAMLGQDAVNTAQAFNEALPLNGVVLTKMDGDSRG 256 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 257 GAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299 >gi|325053853|pdb|2XXA|A Chain A, The Crystal Structure Of The Signal Recognition Particle (Srp) In Complex With Its Receptor(Sr) gi|325053855|pdb|2XXA|C Chain C, The Crystal Structure Of The Signal Recognition Particle (Srp) In Complex With Its Receptor(Sr) Length = 433 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 158/308 (51%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V++ L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V + + ++ N + P V+L+ G+ G GKTT +GKL Sbjct: 62 HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A+ Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K DVL++DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF + Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|77165724|ref|YP_344249.1| Signal recognition particle protein [Nitrosococcus oceani ATCC 19707] gi|254434970|ref|ZP_05048478.1| signal recognition particle protein [Nitrosococcus oceani AFC27] gi|76884038|gb|ABA58719.1| signal recognition particle subunit FFH/SRP54 (srp54) [Nitrosococcus oceani ATCC 19707] gi|207091303|gb|EDZ68574.1| signal recognition particle protein [Nitrosococcus oceani AFC27] Length = 452 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 118/207 (57%), Gaps = 9/207 (4%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT + KL++ + + K V++ + D +R AAI QL+ A+ +F Sbjct: 100 PAVILMAGLQGSGKTTTVAKLARWLKEQQKKSVLVTSADVYRPAAIQQLETLANEVGVEF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL-DPH 228 S+ D A+A A +QA+ + +DVLIIDTAGRLH + ++MA I KRL D Sbjct: 160 YPSKPTEDPVAIAQGAIQQARTQVLDVLIIDTAGRLHVDDLMMAEI-------KRLHDAV 212 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P L V+D+ TGQ+A + F+ TG+I+TK+DG ARGG + I P+ F Sbjct: 213 KPVETLFVVDSMTGQDAANTAQAFNDSLALTGVILTKVDGDARGGAALSIRQITGKPIKF 272 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 LGVGE LE F ++ I G D Sbjct: 273 LGVGEKTAALELFHPDRLASRILGMGD 299 >gi|260856699|ref|YP_003230590.1| signal recognition particle ffs [Escherichia coli O26:H11 str. 11368] gi|260869291|ref|YP_003235693.1| signal recognition particle ffs [Escherichia coli O111:H- str. 11128] gi|257755348|dbj|BAI26850.1| signal recognition particle ffs [Escherichia coli O26:H11 str. 11368] gi|257765647|dbj|BAI37142.1| signal recognition particle ffs [Escherichia coli O111:H- str. 11128] gi|323156264|gb|EFZ42423.1| signal recognition particle protein [Escherichia coli EPECa14] gi|323177264|gb|EFZ62852.1| signal recognition particle protein [Escherichia coli 1180] Length = 453 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 158/308 (51%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V++ L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V + + ++ N + P V+L+ G+ G GKTT +GKL Sbjct: 62 HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A+ Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K DVL++DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF + Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|240081539|ref|ZP_04726082.1| Signal recognition particle signal sequence binding protein Ffh [Neisseria gonorrhoeae FA19] gi|240118776|ref|ZP_04732838.1| Signal recognition particle signal sequence binding protein Ffh [Neisseria gonorrhoeae PID1] gi|240128989|ref|ZP_04741650.1| Signal recognition particle signal sequence binding protein Ffh [Neisseria gonorrhoeae SK-93-1035] gi|268597635|ref|ZP_06131802.1| signal recognition particle signal sequence binding protein Ffh [Neisseria gonorrhoeae FA19] gi|268604488|ref|ZP_06138655.1| signal recognition particle protein [Neisseria gonorrhoeae PID1] gi|268687370|ref|ZP_06154232.1| signal recognition particle protein [Neisseria gonorrhoeae SK-93-1035] gi|268551423|gb|EEZ46442.1| signal recognition particle signal sequence binding protein Ffh [Neisseria gonorrhoeae FA19] gi|268588619|gb|EEZ53295.1| signal recognition particle protein [Neisseria gonorrhoeae PID1] gi|268627654|gb|EEZ60054.1| signal recognition particle protein [Neisseria gonorrhoeae SK-93-1035] Length = 456 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 87/283 (30%), Positives = 152/283 (53%), Gaps = 16/283 (5%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + K ++V+ Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVSLPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALV 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + S P +IL+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGKENKTLDLSVSP-PAIILMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 I + V+ P L V+DA GQ+A+ + F+ G+++TKMDG +RG Sbjct: 203 NEIKALHAVVN------PVETLFVIDAMLGQDAVNTAQAFNEALPLNGVVLTKMDGDSRG 256 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 257 GAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299 >gi|256851291|ref|ZP_05556680.1| signal recognition particle protein [Lactobacillus jensenii 27-2-CHN] gi|260660715|ref|ZP_05861630.1| signal recognition particle protein [Lactobacillus jensenii 115-3-CHN] gi|282933265|ref|ZP_06338652.1| signal recognition particle protein [Lactobacillus jensenii 208-1] gi|297206159|ref|ZP_06923554.1| signal recognition particle protein [Lactobacillus jensenii JV-V16] gi|256616353|gb|EEU21541.1| signal recognition particle protein [Lactobacillus jensenii 27-2-CHN] gi|260548437|gb|EEX24412.1| signal recognition particle protein [Lactobacillus jensenii 115-3-CHN] gi|281302769|gb|EFA94984.1| signal recognition particle protein [Lactobacillus jensenii 208-1] gi|297149285|gb|EFH29583.1| signal recognition particle protein [Lactobacillus jensenii JV-V16] Length = 475 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 100/316 (31%), Positives = 163/316 (51%), Gaps = 23/316 (7%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A E+LS ++ K + + K K DI ++ R E+ L+ +D+ V + Sbjct: 1 MAFENLS--ERIQKALKNLTGKGKVSEADINAASR-------EIRLALLEADVNFKVVKD 51 Query: 66 IVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 ++++ + ++V Q+++ V++ + KM+ + N H P +I++VG+ Sbjct: 52 FIKKIKERALGQEVQGSLTPGQQIIKIVNDELTKMMGEEAAKLNK-APHIPTIIMMVGLQ 110 Query: 121 GVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 G GKTT +GKL+K + D + +L AGD +R AAIDQLK D+ S V SE D A Sbjct: 111 GTGKTTTVGKLAKYLMDTEKARPLLIAGDIYRPAAIDQLKQIGDQLSVP-VFSEDEKDVA 169 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 + + QA+ K D ++IDTAGRL + LM + ++ V K P +++ V+DA Sbjct: 170 KIVADGLAQAKEAKNDYVLIDTAGRLEIDEALMEELERVKEVAK------PDNIVLVVDA 223 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQ + E F TG+I+TK+DG RGG + I P+ F G GE +++LE Sbjct: 224 MTGQVGAQVAETFDKRLDVTGVILTKLDGDTRGGAALSIRAVTGKPILFTGQGEKLSELE 283 Query: 300 PFVAKDFSAVITGCLD 315 F ++ I G D Sbjct: 284 GFYPDRMASRILGMGD 299 >gi|119390344|pdb|2J28|9 Chain 9, Model Of E. Coli Srp Bound To 70s Rncs Length = 430 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 158/308 (51%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V++ L ++ L+ +D+ + V ++ + + K Sbjct: 1 FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 60 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V + + ++ N + P V+L+ G+ G GKTT +GKL Sbjct: 61 HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 119 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A+ Sbjct: 120 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 179 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K DVL++DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 180 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 230 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF + Sbjct: 231 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 290 Query: 308 AVITGCLD 315 + I G D Sbjct: 291 SRILGMGD 298 >gi|15803132|ref|NP_289163.1| signal recognition particle protein [Escherichia coli O157:H7 EDL933] gi|15832727|ref|NP_311500.1| signal recognition particle protein [Escherichia coli O157:H7 str. Sakai] gi|16130531|ref|NP_417101.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Escherichia coli str. K-12 substr. MG1655] gi|26248973|ref|NP_755013.1| signal recognition particle protein [Escherichia coli CFT073] gi|74313200|ref|YP_311619.1| signal recognition particle protein [Shigella sonnei Ss046] gi|82545154|ref|YP_409101.1| signal recognition particle protein [Shigella boydii Sb227] gi|89109411|ref|AP_003191.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Escherichia coli str. K-12 substr. W3110] gi|91211944|ref|YP_541930.1| signal recognition particle protein [Escherichia coli UTI89] gi|110642771|ref|YP_670501.1| signal recognition particle protein [Escherichia coli 536] gi|117624832|ref|YP_853745.1| signal recognition particle protein [Escherichia coli APEC O1] gi|157159233|ref|YP_001463929.1| signal recognition particle protein [Escherichia coli E24377A] gi|157162086|ref|YP_001459404.1| signal recognition particle protein [Escherichia coli HS] gi|168762402|ref|ZP_02787409.1| signal recognition particle protein [Escherichia coli O157:H7 str. EC4501] gi|168768698|ref|ZP_02793705.1| signal recognition particle protein [Escherichia coli O157:H7 str. EC4486] gi|168773463|ref|ZP_02798470.1| signal recognition particle protein [Escherichia coli O157:H7 str. EC4196] gi|168778588|ref|ZP_02803595.1| signal recognition particle protein [Escherichia coli O157:H7 str. EC4076] gi|168789512|ref|ZP_02814519.1| signal recognition particle protein [Escherichia coli O157:H7 str. EC869] gi|168801727|ref|ZP_02826734.1| signal recognition particle protein [Escherichia coli O157:H7 str. EC508] gi|170019113|ref|YP_001724067.1| signal recognition particle protein [Escherichia coli ATCC 8739] gi|170082214|ref|YP_001731534.1| Signal recognition particle (SRP) component with 4.5S RNA (ffs) [Escherichia coli str. K-12 substr. DH10B] gi|187730941|ref|YP_001881400.1| signal recognition particle protein [Shigella boydii CDC 3083-94] gi|188494435|ref|ZP_03001705.1| signal recognition particle protein [Escherichia coli 53638] gi|191169064|ref|ZP_03030827.1| signal recognition particle protein [Escherichia coli B7A] gi|193064057|ref|ZP_03045142.1| signal recognition particle protein [Escherichia coli E22] gi|194430165|ref|ZP_03062666.1| signal recognition particle protein [Escherichia coli B171] gi|194439372|ref|ZP_03071450.1| signal recognition particle protein [Escherichia coli 101-1] gi|208806160|ref|ZP_03248497.1| signal recognition particle protein [Escherichia coli O157:H7 str. EC4206] gi|208813814|ref|ZP_03255143.1| signal recognition particle protein [Escherichia coli O157:H7 str. EC4045] gi|208819384|ref|ZP_03259704.1| signal recognition particle protein [Escherichia coli O157:H7 str. EC4042] gi|209398002|ref|YP_002272081.1| signal recognition particle protein [Escherichia coli O157:H7 str. EC4115] gi|209920085|ref|YP_002294169.1| signal recognition particle protein [Escherichia coli SE11] gi|215487960|ref|YP_002330391.1| signal recognition particle protein [Escherichia coli O127:H6 str. E2348/69] gi|217327115|ref|ZP_03443198.1| signal recognition particle protein [Escherichia coli O157:H7 str. TW14588] gi|218547871|ref|YP_002381662.1| signal recognition particle protein [Escherichia fergusonii ATCC 35469] gi|218559530|ref|YP_002392443.1| signal recognition particle protein [Escherichia coli S88] gi|218690728|ref|YP_002398940.1| signal recognition particle protein [Escherichia coli ED1a] gi|218696234|ref|YP_002403901.1| signal recognition particle protein [Escherichia coli 55989] gi|218706111|ref|YP_002413630.1| signal recognition particle protein [Escherichia coli UMN026] gi|227888176|ref|ZP_04005981.1| signal recognition particle protein [Escherichia coli 83972] gi|237706802|ref|ZP_04537283.1| signal recognition particle protein [Escherichia sp. 3_2_53FAA] gi|238901770|ref|YP_002927566.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Escherichia coli BW2952] gi|253772496|ref|YP_003035327.1| signal recognition particle protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254037686|ref|ZP_04871744.1| signal recognition particle protein [Escherichia sp. 1_1_43] gi|254162580|ref|YP_003045688.1| signal recognition particle protein [Escherichia coli B str. REL606] gi|254794556|ref|YP_003079393.1| signal recognition particle protein [Escherichia coli O157:H7 str. TW14359] gi|256019571|ref|ZP_05433436.1| signal recognition particle protein [Shigella sp. D9] gi|256024863|ref|ZP_05438728.1| signal recognition particle protein [Escherichia sp. 4_1_40B] gi|260845291|ref|YP_003223069.1| signal recognition particle ffs [Escherichia coli O103:H2 str. 12009] gi|261227493|ref|ZP_05941774.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Escherichia coli O157:H7 str. FRIK2000] gi|261255687|ref|ZP_05948220.1| signal recognition particle ffs [Escherichia coli O157:H7 str. FRIK966] gi|291283882|ref|YP_003500700.1| Signal recognition particle protein [Escherichia coli O55:H7 str. CB9615] gi|293406117|ref|ZP_06650043.1| signal recognition particle protein [Escherichia coli FVEC1412] gi|293412000|ref|ZP_06654723.1| signal recognition particle protein [Escherichia coli B354] gi|293415881|ref|ZP_06658521.1| signal recognition particle protein [Escherichia coli B185] gi|293448960|ref|ZP_06663381.1| signal recognition particle protein [Escherichia coli B088] gi|298381850|ref|ZP_06991447.1| signal recognition particle protein [Escherichia coli FVEC1302] gi|300900204|ref|ZP_07118392.1| signal recognition particle protein [Escherichia coli MS 198-1] gi|300905070|ref|ZP_07122879.1| signal recognition particle protein [Escherichia coli MS 84-1] gi|300921154|ref|ZP_07137533.1| signal recognition particle protein [Escherichia coli MS 115-1] gi|300925602|ref|ZP_07141472.1| signal recognition particle protein [Escherichia coli MS 182-1] gi|300930665|ref|ZP_07146051.1| signal recognition particle protein [Escherichia coli MS 187-1] gi|300940948|ref|ZP_07155472.1| signal recognition particle protein [Escherichia coli MS 21-1] gi|300949005|ref|ZP_07163058.1| signal recognition particle protein [Escherichia coli MS 116-1] gi|300957395|ref|ZP_07169609.1| signal recognition particle protein [Escherichia coli MS 175-1] gi|300986820|ref|ZP_07177809.1| signal recognition particle protein [Escherichia coli MS 45-1] gi|300990720|ref|ZP_07179305.1| signal recognition particle protein [Escherichia coli MS 200-1] gi|301026378|ref|ZP_07189824.1| signal recognition particle protein [Escherichia coli MS 69-1] gi|301026818|ref|ZP_07190220.1| signal recognition particle protein [Escherichia coli MS 196-1] gi|301050480|ref|ZP_07197359.1| signal recognition particle protein [Escherichia coli MS 185-1] gi|301305745|ref|ZP_07211832.1| signal recognition particle protein [Escherichia coli MS 124-1] gi|301326730|ref|ZP_07220044.1| signal recognition particle protein [Escherichia coli MS 78-1] gi|301644052|ref|ZP_07244068.1| signal recognition particle protein [Escherichia coli MS 146-1] gi|306812472|ref|ZP_07446670.1| signal recognition particle protein [Escherichia coli NC101] gi|307139331|ref|ZP_07498687.1| signal recognition particle protein [Escherichia coli H736] gi|307315078|ref|ZP_07594662.1| signal recognition particle protein [Escherichia coli W] gi|309794121|ref|ZP_07688545.1| signal recognition particle protein [Escherichia coli MS 145-7] gi|312965541|ref|ZP_07779772.1| signal recognition particle protein [Escherichia coli 2362-75] gi|312973148|ref|ZP_07787321.1| signal recognition particle protein [Escherichia coli 1827-70] gi|331643326|ref|ZP_08344457.1| signal recognition particle protein [Escherichia coli H736] gi|331648352|ref|ZP_08349440.1| signal recognition particle protein [Escherichia coli M605] gi|331654067|ref|ZP_08355067.1| signal recognition particle protein [Escherichia coli M718] gi|331658758|ref|ZP_08359700.1| signal recognition particle protein [Escherichia coli TA206] gi|331664175|ref|ZP_08365084.1| signal recognition particle protein [Escherichia coli TA143] gi|331669360|ref|ZP_08370206.1| signal recognition particle protein [Escherichia coli TA271] gi|331674050|ref|ZP_08374812.1| signal recognition particle protein [Escherichia coli TA280] gi|331678601|ref|ZP_08379275.1| signal recognition particle protein [Escherichia coli H591] gi|331684266|ref|ZP_08384858.1| signal recognition particle protein [Escherichia coli H299] gi|332280695|ref|ZP_08393108.1| signal recognition particle protein Ffh [Shigella sp. D9] gi|84028787|sp|P0AGD9|SRP54_ECO57 RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog gi|84028788|sp|P0AGD8|SRP54_ECOL6 RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog gi|84028789|sp|P0AGD7|SRP54_ECOLI RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog; AltName: Full=p48 gi|12517035|gb|AAG57721.1|AE005491_1 GTP-binding export factor binds to signal sequence, GTP and RNA [Escherichia coli O157:H7 str. EDL933] gi|26109379|gb|AAN81581.1|AE016764_263 Signal recognition particle protein [Escherichia coli CFT073] gi|1788963|gb|AAC75659.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Escherichia coli str. K-12 substr. MG1655] gi|13362944|dbj|BAB36896.1| signal recognition particle protein Ffh [Escherichia coli O157:H7 str. Sakai] gi|73856677|gb|AAZ89384.1| GTP-binding export factor binds to signal sequence, GTP and RNA [Shigella sonnei Ss046] gi|81246565|gb|ABB67273.1| GTP-binding export factor [Shigella boydii Sb227] gi|85675481|dbj|BAA16495.2| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Escherichia coli str. K12 substr. W3110] gi|91073518|gb|ABE08399.1| signal recognition particle protein [Escherichia coli UTI89] gi|110344363|gb|ABG70600.1| signal recognition particle protein [Escherichia coli 536] gi|115513956|gb|ABJ02031.1| signal recognition particle (SRP) component with 4.5S RNA (ffs) [Escherichia coli APEC O1] gi|157067766|gb|ABV07021.1| signal recognition particle protein [Escherichia coli HS] gi|157081263|gb|ABV20971.1| signal recognition particle protein [Escherichia coli E24377A] gi|169754041|gb|ACA76740.1| signal recognition particle protein [Escherichia coli ATCC 8739] gi|169890049|gb|ACB03756.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Escherichia coli str. K-12 substr. DH10B] gi|187427933|gb|ACD07207.1| signal recognition particle protein [Shigella boydii CDC 3083-94] gi|187770557|gb|EDU34401.1| signal recognition particle protein [Escherichia coli O157:H7 str. EC4196] gi|188489634|gb|EDU64737.1| signal recognition particle protein [Escherichia coli 53638] gi|189003543|gb|EDU72529.1| signal recognition particle protein [Escherichia coli O157:H7 str. EC4076] gi|189362137|gb|EDU80556.1| signal recognition particle protein [Escherichia coli O157:H7 str. EC4486] gi|189367273|gb|EDU85689.1| signal recognition particle protein [Escherichia coli O157:H7 str. EC4501] gi|189370881|gb|EDU89297.1| signal recognition particle protein [Escherichia coli O157:H7 str. EC869] gi|189376173|gb|EDU94589.1| signal recognition particle protein [Escherichia coli O157:H7 str. EC508] gi|190900905|gb|EDV60691.1| signal recognition particle protein [Escherichia coli B7A] gi|192929292|gb|EDV82901.1| signal recognition particle protein [Escherichia coli E22] gi|194411790|gb|EDX28111.1| signal recognition particle protein [Escherichia coli B171] gi|194421734|gb|EDX37743.1| signal recognition particle protein [Escherichia coli 101-1] gi|208725961|gb|EDZ75562.1| signal recognition particle protein [Escherichia coli O157:H7 str. EC4206] gi|208735091|gb|EDZ83778.1| signal recognition particle protein [Escherichia coli O157:H7 str. EC4045] gi|208739507|gb|EDZ87189.1| signal recognition particle protein [Escherichia coli O157:H7 str. EC4042] gi|209159402|gb|ACI36835.1| signal recognition particle protein [Escherichia coli O157:H7 str. EC4115] gi|209762528|gb|ACI79576.1| signal recognition particle protein Ffh [Escherichia coli] gi|209762530|gb|ACI79577.1| signal recognition particle protein Ffh [Escherichia coli] gi|209762532|gb|ACI79578.1| signal recognition particle protein Ffh [Escherichia coli] gi|209762534|gb|ACI79579.1| signal recognition particle protein Ffh [Escherichia coli] gi|209762536|gb|ACI79580.1| signal recognition particle protein Ffh [Escherichia coli] gi|209913344|dbj|BAG78418.1| conserved hypothetical protein [Escherichia coli SE11] gi|215266032|emb|CAS10447.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Escherichia coli O127:H6 str. E2348/69] gi|217319482|gb|EEC27907.1| signal recognition particle protein [Escherichia coli O157:H7 str. TW14588] gi|218352966|emb|CAU98766.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Escherichia coli 55989] gi|218355412|emb|CAQ88021.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Escherichia fergusonii ATCC 35469] gi|218366299|emb|CAR04050.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Escherichia coli S88] gi|218428292|emb|CAR09216.2| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Escherichia coli ED1a] gi|218433208|emb|CAR14106.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Escherichia coli UMN026] gi|222034312|emb|CAP77053.1| Signal recognition particle protein [Escherichia coli LF82] gi|226839310|gb|EEH71331.1| signal recognition particle protein [Escherichia sp. 1_1_43] gi|226899842|gb|EEH86101.1| signal recognition particle protein [Escherichia sp. 3_2_53FAA] gi|227834816|gb|EEJ45282.1| signal recognition particle protein [Escherichia coli 83972] gi|238863555|gb|ACR65553.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Escherichia coli BW2952] gi|242378205|emb|CAQ32980.1| protein component of the signal recognition particle (SRP), subunit of Signal Recognition Particle Protein Translocation System [Escherichia coli BL21(DE3)] gi|253323540|gb|ACT28142.1| signal recognition particle protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974481|gb|ACT40152.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Escherichia coli B str. REL606] gi|253978648|gb|ACT44318.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Escherichia coli BL21(DE3)] gi|254593956|gb|ACT73317.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Escherichia coli O157:H7 str. TW14359] gi|257760438|dbj|BAI31935.1| signal recognition particle ffs [Escherichia coli O103:H2 str. 12009] gi|260448316|gb|ACX38738.1| signal recognition particle protein [Escherichia coli DH1] gi|281179656|dbj|BAI55986.1| conserved hypothetical protein [Escherichia coli SE15] gi|284922556|emb|CBG35643.1| signal recognition particle protein [Escherichia coli 042] gi|290763755|gb|ADD57716.1| Signal recognition particle protein [Escherichia coli O55:H7 str. CB9615] gi|291322050|gb|EFE61479.1| signal recognition particle protein [Escherichia coli B088] gi|291426123|gb|EFE99155.1| signal recognition particle protein [Escherichia coli FVEC1412] gi|291432070|gb|EFF05052.1| signal recognition particle protein [Escherichia coli B185] gi|291468771|gb|EFF11262.1| signal recognition particle protein [Escherichia coli B354] gi|294492947|gb|ADE91703.1| signal recognition particle protein [Escherichia coli IHE3034] gi|298276990|gb|EFI18506.1| signal recognition particle protein [Escherichia coli FVEC1302] gi|299879564|gb|EFI87775.1| signal recognition particle protein [Escherichia coli MS 196-1] gi|300297827|gb|EFJ54212.1| signal recognition particle protein [Escherichia coli MS 185-1] gi|300305688|gb|EFJ60208.1| signal recognition particle protein [Escherichia coli MS 200-1] gi|300315830|gb|EFJ65614.1| signal recognition particle protein [Escherichia coli MS 175-1] gi|300356261|gb|EFJ72131.1| signal recognition particle protein [Escherichia coli MS 198-1] gi|300395564|gb|EFJ79102.1| signal recognition particle protein [Escherichia coli MS 69-1] gi|300403021|gb|EFJ86559.1| signal recognition particle protein [Escherichia coli MS 84-1] gi|300407872|gb|EFJ91410.1| signal recognition particle protein [Escherichia coli MS 45-1] gi|300411904|gb|EFJ95214.1| signal recognition particle protein [Escherichia coli MS 115-1] gi|300418297|gb|EFK01608.1| signal recognition particle protein [Escherichia coli MS 182-1] gi|300451532|gb|EFK15152.1| signal recognition particle protein [Escherichia coli MS 116-1] gi|300454272|gb|EFK17765.1| signal recognition particle protein [Escherichia coli MS 21-1] gi|300461462|gb|EFK24955.1| signal recognition particle protein [Escherichia coli MS 187-1] gi|300838999|gb|EFK66759.1| signal recognition particle protein [Escherichia coli MS 124-1] gi|300846590|gb|EFK74350.1| signal recognition particle protein [Escherichia coli MS 78-1] gi|301077597|gb|EFK92403.1| signal recognition particle protein [Escherichia coli MS 146-1] gi|305854510|gb|EFM54948.1| signal recognition particle protein [Escherichia coli NC101] gi|306905507|gb|EFN36041.1| signal recognition particle protein [Escherichia coli W] gi|307554623|gb|ADN47398.1| GTP-binding export factor binds to signal sequence, GTP and RNA [Escherichia coli ABU 83972] gi|307625840|gb|ADN70144.1| signal recognition particle protein [Escherichia coli UM146] gi|308122026|gb|EFO59288.1| signal recognition particle protein [Escherichia coli MS 145-7] gi|309702990|emb|CBJ02321.1| signal recognition particle protein [Escherichia coli ETEC H10407] gi|310333090|gb|EFQ00304.1| signal recognition particle protein [Escherichia coli 1827-70] gi|312289789|gb|EFR17678.1| signal recognition particle protein [Escherichia coli 2362-75] gi|312947182|gb|ADR28009.1| signal recognition particle protein [Escherichia coli O83:H1 str. NRG 857C] gi|315061924|gb|ADT76251.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Escherichia coli W] gi|315137228|dbj|BAJ44387.1| signal recognition particle protein [Escherichia coli DH1] gi|315253137|gb|EFU33105.1| signal recognition particle protein [Escherichia coli MS 85-1] gi|315284814|gb|EFU44259.1| signal recognition particle protein [Escherichia coli MS 110-3] gi|315290949|gb|EFU50314.1| signal recognition particle protein [Escherichia coli MS 153-1] gi|315298671|gb|EFU57925.1| signal recognition particle protein [Escherichia coli MS 16-3] gi|315615309|gb|EFU95944.1| signal recognition particle protein [Escherichia coli 3431] gi|320177027|gb|EFW52048.1| Signal recognition particle, subunit Ffh SRP54 [Shigella dysenteriae CDC 74-1112] gi|320182476|gb|EFW57370.1| Signal recognition particle, subunit Ffh SRP54 [Shigella boydii ATCC 9905] gi|320183091|gb|EFW57953.1| Signal recognition particle, subunit Ffh SRP54 [Shigella flexneri CDC 796-83] gi|320188945|gb|EFW63604.1| Signal recognition particle, subunit Ffh SRP54 [Escherichia coli O157:H7 str. EC1212] gi|320194774|gb|EFW69403.1| Signal recognition particle, subunit Ffh SRP54 [Escherichia coli WV_060327] gi|320198383|gb|EFW72985.1| Signal recognition particle, subunit Ffh SRP54 [Escherichia coli EC4100B] gi|320640792|gb|EFX10290.1| signal recognition particle protein [Escherichia coli O157:H7 str. G5101] gi|320646137|gb|EFX15082.1| signal recognition particle protein [Escherichia coli O157:H- str. 493-89] gi|320651434|gb|EFX19835.1| signal recognition particle protein [Escherichia coli O157:H- str. H 2687] gi|320657039|gb|EFX24862.1| signal recognition particle protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662703|gb|EFX30047.1| signal recognition particle protein [Escherichia coli O55:H7 str. USDA 5905] gi|320667520|gb|EFX34444.1| signal recognition particle protein [Escherichia coli O157:H7 str. LSU-61] gi|323159129|gb|EFZ45122.1| signal recognition particle protein [Escherichia coli E128010] gi|323167733|gb|EFZ53428.1| signal recognition particle protein [Shigella sonnei 53G] gi|323173073|gb|EFZ58704.1| signal recognition particle protein [Escherichia coli LT-68] gi|323184515|gb|EFZ69889.1| signal recognition particle protein [Escherichia coli 1357] gi|323188398|gb|EFZ73687.1| signal recognition particle protein [Escherichia coli RN587/1] gi|323377496|gb|ADX49764.1| signal recognition particle protein [Escherichia coli KO11] gi|323935676|gb|EGB31993.1| signal recognition particle protein [Escherichia coli E1520] gi|323941372|gb|EGB37556.1| signal recognition particle protein [Escherichia coli E482] gi|323946263|gb|EGB42296.1| signal recognition particle protein [Escherichia coli H120] gi|323951191|gb|EGB47067.1| signal recognition particle protein [Escherichia coli H252] gi|323957023|gb|EGB52749.1| signal recognition particle protein [Escherichia coli H263] gi|323960532|gb|EGB56161.1| signal recognition particle protein [Escherichia coli H489] gi|323963919|gb|EGB59412.1| signal recognition particle protein [Escherichia coli M863] gi|323971447|gb|EGB66683.1| signal recognition particle protein [Escherichia coli TA007] gi|323978481|gb|EGB73564.1| signal recognition particle protein [Escherichia coli TW10509] gi|324012448|gb|EGB81667.1| signal recognition particle protein [Escherichia coli MS 60-1] gi|324016586|gb|EGB85805.1| signal recognition particle protein [Escherichia coli MS 117-3] gi|324111246|gb|EGC05228.1| signal recognition particle protein [Escherichia fergusonii B253] gi|324120067|gb|EGC13943.1| signal recognition particle protein [Escherichia coli E1167] gi|325496322|gb|EGC94181.1| signal recognition particle protein [Escherichia fergusonii ECD227] gi|326344362|gb|EGD68120.1| Signal recognition particle, subunit Ffh SRP54 [Escherichia coli O157:H7 str. 1125] gi|326347731|gb|EGD71448.1| Signal recognition particle, subunit Ffh SRP54 [Escherichia coli O157:H7 str. 1044] gi|327252315|gb|EGE63987.1| signal recognition particle protein [Escherichia coli STEC_7v] gi|330912373|gb|EGH40883.1| signal recognition particle, subunit Ffh SRP54 [Escherichia coli AA86] gi|331036797|gb|EGI09021.1| signal recognition particle protein [Escherichia coli H736] gi|331042099|gb|EGI14241.1| signal recognition particle protein [Escherichia coli M605] gi|331047449|gb|EGI19526.1| signal recognition particle protein [Escherichia coli M718] gi|331053340|gb|EGI25369.1| signal recognition particle protein [Escherichia coli TA206] gi|331058632|gb|EGI30610.1| signal recognition particle protein [Escherichia coli TA143] gi|331063028|gb|EGI34941.1| signal recognition particle protein [Escherichia coli TA271] gi|331068789|gb|EGI40182.1| signal recognition particle protein [Escherichia coli TA280] gi|331073431|gb|EGI44752.1| signal recognition particle protein [Escherichia coli H591] gi|331077881|gb|EGI49087.1| signal recognition particle protein [Escherichia coli H299] gi|332088118|gb|EGI93243.1| signal recognition particle protein [Shigella boydii 5216-82] gi|332089181|gb|EGI94288.1| signal recognition particle protein [Shigella dysenteriae 155-74] gi|332092111|gb|EGI97189.1| signal recognition particle protein [Shigella boydii 3594-74] gi|332103047|gb|EGJ06393.1| signal recognition particle protein Ffh [Shigella sp. D9] gi|332344479|gb|AEE57813.1| signal recognition particle protein [Escherichia coli UMNK88] Length = 453 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 158/308 (51%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V++ L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V + + ++ N + P V+L+ G+ G GKTT +GKL Sbjct: 62 HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A+ Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K DVL++DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF + Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|126665078|ref|ZP_01736061.1| signal recognition particle protein [Marinobacter sp. ELB17] gi|126630448|gb|EBA01063.1| signal recognition particle protein [Marinobacter sp. ELB17] Length = 461 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 94/307 (30%), Positives = 157/307 (51%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + +L + I RL +D +++ L ++ L+ +D+ + V + VE + + Sbjct: 2 FENLQDRLSGSLRKITGQARLTEDNIKDTLREVRMALLEADVALPVVKDFVESVRQRAIG 61 Query: 77 KDVSVQRVLYD-------VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 ++V QR L V + + +++ + N + P VI++ G+ G GKTT + Sbjct: 62 QEV--QRSLTPGQVFVKVVQQELERVMGEANTGLNLSVTP-PAVIMMAGLQGAGKTTTVA 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL++ + + K VM+ + D +R AAI QL+ A+ +F S D A+A A Sbjct: 119 KLARFLKERQKKSVMVVSADIYRPAAIKQLETLANEVGVEFFPSSADQDPVAIAEGAISA 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K +DV+I+DTAGRL + ++M I ++ +K P L V+DA TGQ+A Sbjct: 179 ARKKHIDVVILDTAGRLAIDEMMMGEISRLHAAVK------PIETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F+ TG+++TK DG ARGG + + P+ FLGVGE + LEPF ++ Sbjct: 233 AKAFNEALPLTGVVLTKTDGDARGGAALSVRHITGKPIKFLGVGEKSDALEPFHPDRVAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|119719417|ref|YP_919912.1| GTP-binding signal recognition particle [Thermofilum pendens Hrk 5] gi|119524537|gb|ABL77909.1| signal recognition particle subunit FFH/SRP54 (srp54) [Thermofilum pendens Hrk 5] Length = 431 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 90/289 (31%), Positives = 145/289 (50%), Gaps = 19/289 (6%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVA--------VAQKIVEELLTKRYAKDVSVQRVLY 86 ++ SR +D +RE L+ L+++D+ V + ++ EE ++K + ++LY Sbjct: 20 LLDSREVDLVIRE-LQRALLKADVDVGLVLSVSERIKKRFFEEEQPPGFSKKEVLVKILY 78 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + EL++ L+ + S P ++ VG+ G GKTT + K++ G +V + A Sbjct: 79 E--ELVN--LLGGEETPELKVSSTPFKVMFVGLEGSGKTTTVAKVANYYKRKGYRVGVVA 134 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 DT+R A +QL+ A++ F DA +LA K K + +++IDTAGR Sbjct: 135 ADTYRPGAYEQLRSLAEKVGVPFYGDPQERDAVSLALRGVKVLSDKGIQMILIDTAGRHK 194 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + LM + + R +K P +V+ V+DAT G RQ F +I+ KM Sbjct: 195 DEEALMEEVKTLYREVK------PDAVVLVVDATQGSAVARQARAFQEAMPFGYVIVAKM 248 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG+A+GGG + V + K V F+G GE I DLE F K F A + G D Sbjct: 249 DGSAKGGGALSAVASSKARVIFIGTGEKIEDLEEFNPKKFVARLLGMPD 297 >gi|281412663|ref|YP_003346742.1| signal recognition particle protein [Thermotoga naphthophila RKU-10] gi|281373766|gb|ADA67328.1| signal recognition particle protein [Thermotoga naphthophila RKU-10] Length = 433 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 88/285 (30%), Positives = 149/285 (52%), Gaps = 15/285 (5%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 I+ + + D +RE ++ L+ +D+ V ++ V+ +L K ++V Q+ + V + Sbjct: 22 ITEKNVKDAIRE-VKLSLLEADVNYKVVKEFVDHVLQKALGEEVLRSLTPDQQFIKIVRD 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + +++ ++P HRP I++VG+ G GKTT KL+K + G +L A D + Sbjct: 81 ELVRIMGEKNEPLR--LVHRPAPIMMVGLQGSGKTTTCAKLAKLLKKEGRNPLLVAADLY 138 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AA+DQL ++ + V + + EA A++ D+LI+DTAGRLH + Sbjct: 139 RPAAVDQLVKLGNQIGVN-VVHDYNKTPVEIVKEAVDVAESTGKDILIVDTAGRLHIDEE 197 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 +M + ++ ++L P +L V+DA GQ+A+ ++F TG ++TKMDG A Sbjct: 198 MMKELEEIKKILN------PDEILLVVDAMMGQDAVNTAKVFDERLDLTGFVVTKMDGDA 251 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG ++ I PV F+G E I+ LEPF + I G D Sbjct: 252 RGGVILSIKYVTGKPVKFIGTSEKIDGLEPFHPDRIANRILGMGD 296 >gi|195939662|ref|ZP_03085044.1| signal recognition particle protein [Escherichia coli O157:H7 str. EC4024] Length = 453 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 158/308 (51%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V++ L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V + + ++ N + P V+L+ G+ G GKTT +GKL Sbjct: 62 HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A+ Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K DVL++DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF + Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|297517102|ref|ZP_06935488.1| signal recognition particle protein [Escherichia coli OP50] Length = 453 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 158/308 (51%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V++ L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMVLLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V + + ++ N + P V+L+ G+ G GKTT +GKL Sbjct: 62 HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A+ Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K DVL++DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF + Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|183597522|ref|ZP_02959015.1| hypothetical protein PROSTU_00796 [Providencia stuartii ATCC 25827] gi|188023168|gb|EDU61208.1| hypothetical protein PROSTU_00796 [Providencia stuartii ATCC 25827] Length = 453 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 163/306 (53%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL DD +++ L ++ L+ +D+ + V ++ ++++ Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTDDNIKDTLREVRMALLEADVALPVVREFIQKVKESAVG 61 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHRPHVILVVGVNGVGKTTVIGK 130 +DV+ + L E I + L++ + + P V+L+ G+ G GKTT + K Sbjct: 62 QDVN--KSLTPGQEFIKIVQNELTRAMGEENHQLNLSAQPPAVVLMAGLQGAGKTTSVAK 119 Query: 131 LSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + K +L + D +R AAI QL+ A+ DF S++ AA+ +A K A Sbjct: 120 LGKLLKEKQKKKVLVVSADVYRPAAIKQLETLAETVGIDFFPSDVKEKPAAIVQKALKHA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 Q + DVL++DTAGRLH + +M I ++ R++K P L V+DA TGQ+A Sbjct: 180 QLQFYDVLLVDTAGRLHVDEAMMEEIQEVHRIIK------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+++TK+DG ARGG + I P+ FLGVGE + LEPF + ++ Sbjct: 234 KAFNEALPLTGVVLTKVDGDARGGAALSIRAITGKPIKFLGVGEKTDALEPFHPERVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|150866311|ref|XP_001385860.2| Signal recognition particle 54 kDa protein [Scheffersomyces stipitis CBS 6054] gi|149387567|gb|ABN67831.2| Signal recognition particle 54 kDa protein [Scheffersomyces stipitis CBS 6054] Length = 561 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/207 (37%), Positives = 109/207 (52%), Gaps = 12/207 (5%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 H+I+ VG+ G GKTT KL+ G KV L DTFR+ A DQLK A + S + Sbjct: 118 HIIMFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNAIKASIPYYG 177 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPH 228 S + D +AYE + +++K D++I+DT+GR L M IG+MI+ Sbjct: 178 SYLEQDPVKIAYEGVTKFRSEKFDIIIVDTSGRHRQEHQLFQEMVQIGEMIQ-------- 229 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P + V+D + GQ A Q + F + +I+TKMDG A+GGG I V K P+ F Sbjct: 230 -PTQTIMVMDGSIGQAAESQAKAFKESSNFGSIILTKMDGHAKGGGAISAVAATKTPIVF 288 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +G GE I DLE F F + + G D Sbjct: 289 IGTGEHIGDLEIFKPTTFISKLLGIGD 315 >gi|293609099|ref|ZP_06691402.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829672|gb|EFF88034.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325121126|gb|ADY80649.1| 4.5S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNA [Acinetobacter calcoaceticus PHEA-2] Length = 470 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 160/295 (54%), Gaps = 25/295 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + ++ S +L +D +++ L ++ L+ +D+ + V ++ + ++ + Sbjct: 2 FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61 Query: 77 KDVSVQ--------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTV 127 ++V Q +++YD + KM+ ++ D S +P V+ L+ G+ G GKTT Sbjct: 62 QEVMTQLSPGQAFVKIVYDE---LTKMMGEANE--TLDLSAKPPVVVLLAGLQGAGKTTT 116 Query: 128 IGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL++ + + KVM + D +R AAI QL+ ++ A F+ S+ + A Sbjct: 117 AAKLARFLKERQKKKVMTVSADVYRPAAIKQLETVSNEVGAGFIPSDPSEKPIDIVNRAI 176 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 +QA+ + DVLI+DTAGRLH ++ +M I ++ +K P L V+DA TGQ+A Sbjct: 177 EQAKIQFADVLIVDTAGRLHVDADMMDEIKELHAAVK------PTETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F+ TG+I+TK DG ARGG + + P+ FLG+GE ++ LEPF Sbjct: 231 NTAKAFNDALALTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPF 285 >gi|280987222|gb|ADA00385.1| signal recognition particle protein SRP [Anabaena sp. 90] Length = 482 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 91/293 (31%), Positives = 147/293 (50%), Gaps = 25/293 (8%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85 D IS + D +RE + L+ +D+ + V + + E+ TK +V +++ Sbjct: 20 DKISQSNIQDALRE-VRRALLEADVNLQVVKDFISEVETKAQGAEVIAGVRPDQQFIKIV 78 Query: 86 YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 YD EL+ M +PL+ + + + V+L+ G+ G GKTT KL+ + Sbjct: 79 YD--ELVQVMGEENVPLA-----EVAGKTTVVLMAGLQGTGKTTATAKLALHLRKQDRSC 131 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +L A D +R AAIDQL + I +D +A + ++A+A+ ++ +IIDTA Sbjct: 132 LLVATDIYRPAAIDQLITLGKQIDVPVFELGIAADPVEIARQGVERARAEGINTVIIDTA 191 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRL + +MA + ++ V++ P L V+DA TGQ A FH G TG I Sbjct: 192 GRLQIDEDMMAELARIKEVVQ------PDETLLVVDAMTGQEAANLTRTFHNQIGITGAI 245 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +TKMDG +RGG + + P+ F+GVGE + L+PF ++ I G D Sbjct: 246 LTKMDGDSRGGAALSVRQISGAPIKFVGVGEKVEALQPFYPDRMASRILGMGD 298 >gi|15237580|ref|NP_196014.1| CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT); 7S RNA binding / GTP binding / mRNA binding / signal sequence binding [Arabidopsis thaliana] gi|586038|sp|P37107|SR54C_ARATH RecName: Full=Signal recognition particle 54 kDa protein, chloroplastic; Short=54 chloroplast protein; Short=54CP; Short=SRP54; AltName: Full=FFC; Flags: Precursor gi|396701|emb|CAA79981.1| 54CP [Arabidopsis thaliana] gi|7406404|emb|CAB85514.1| signal recognition particle 54CP protein precursor [Arabidopsis thaliana] gi|15293131|gb|AAK93676.1| putative signal recognition particle 54CP protein precursor [Arabidopsis thaliana] gi|24030445|gb|AAN41376.1| putative signal recognition particle 54CP protein precursor [Arabidopsis thaliana] gi|332003291|gb|AED90674.1| signal recognition particle subunit [Arabidopsis thaliana] Length = 564 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 93/285 (32%), Positives = 145/285 (50%), Gaps = 23/285 (8%) Query: 43 DGVREELEDL---LIRSDIGVAVAQKIVEEL--------LTKRYAKDVSVQRVLYDVSEL 91 D + E + D+ L+ +D+ + V ++ V+ + + + D + ++++D EL Sbjct: 101 DNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVIRGVKPDQQLVKIVHD--EL 158 Query: 92 IHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + M +S+ F+ P VIL+ G+ GVGKTTV KL+ + G ML AGD + Sbjct: 159 VKLMGGEVSE---LQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVY 215 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAIDQL I ++ + A +A + K+A+ VDV+I+DTAGRL + Sbjct: 216 RPAAIDQLVILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKG 275 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 +M + + + L P VL V+DA TGQ A V F+ G TG I+TK+DG + Sbjct: 276 MMDELKDVKKFLN------PTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDS 329 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + + P+ +G GE + DLEPF + I G D Sbjct: 330 RGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGD 374 >gi|325131021|gb|EGC53748.1| signal recognition particle protein [Neisseria meningitidis OX99.30304] Length = 456 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 153/286 (53%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + K ++V+ Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALV 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + + P V+L+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGKENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA GQ+A+ + F+ TG+++TKMDG Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299 >gi|329847289|ref|ZP_08262317.1| signal recognition particle protein [Asticcacaulis biprosthecum C19] gi|328842352|gb|EGF91921.1| signal recognition particle protein [Asticcacaulis biprosthecum C19] Length = 521 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 94/291 (32%), Positives = 155/291 (53%), Gaps = 21/291 (7%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIV---------EELLTKRYAKDVSVQRVL 85 ++S + +D+ +RE + L+ +D+ + V ++ + EE++ D V +++ Sbjct: 21 VLSEKDVDEALRE-VRVALLEADVALPVVRQFMTKAKELATGEEIIKAVKPAD-QVVKIV 78 Query: 86 YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VML 144 YD LI + +P N + + P VI++ G+ G GKTT KL+ ++S K VM+ Sbjct: 79 YD--GLIDMLGGEEPEPLNLN-AVPPAVIMMAGLQGSGKTTTSAKLALRLSKFDRKKVMM 135 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 A+ DT R AA++QLK+ A++ DF+ G A +A A + A+ + DVLI+DTAGR Sbjct: 136 ASLDTRRPAAMEQLKLLAEQVGVDFLPIVAGQSATDIARRALQAAKIQGFDVLILDTAGR 195 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 + LM+ ++ R+ P V D+ TGQ+A+R FH TGLI+T Sbjct: 196 TTLDEALMSEAAEIARIAN------PIETFLVADSLTGQDAVRTATAFHERLPLTGLILT 249 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + DG ARGG ++ + +P+ FLG GE + L+ F A+ + I G D Sbjct: 250 RADGDARGGAMLSMRAVTGLPIKFLGAGEKVEALDVFDARRVAGRILGQGD 300 >gi|261202392|ref|XP_002628410.1| signal recognition particle protein SRP54 [Ajellomyces dermatitidis SLH14081] gi|239590507|gb|EEQ73088.1| signal recognition particle protein SRP54 [Ajellomyces dermatitidis SLH14081] Length = 530 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 146/301 (48%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ + D+ S LD D + +E+ L+ +D+ V + Q + + + L Sbjct: 9 RINAAVNDLTRSNNLDEQAFDAMIKEICAALLSADVNVRLVQSLRKSIKAAVPFSSLPPA 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D +L+ ++ P ++PF R +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKTVFD--QLV-ALVDPHAEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G + L DTFR+ A DQLK A + + S +D A +A E + + ++ Sbjct: 125 YQTRGFRAALVCADTFRAGAFDQLKQNATKAKIPYFGSLTQTDPAVVAAEGVAKFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D++I+DT+GR L + ++ +K P + VLD T GQ A Q F A Sbjct: 185 DIIIVDTSGRHKQEEDLFTEMTQIQTAIK------PDQTILVLDGTIGQAAESQSAAFKA 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG+A GGG I V P+ FLG GE + DLE F K F + G Sbjct: 239 TADFGAIIITKTDGSAAGGGAISAVAATHTPIIFLGTGEHMLDLERFAPKPFIQKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|82777969|ref|YP_404318.1| signal recognition particle protein [Shigella dysenteriae Sd197] gi|309784646|ref|ZP_07679281.1| signal recognition particle protein [Shigella dysenteriae 1617] gi|81242117|gb|ABB62827.1| GTP-binding export factor [Shigella dysenteriae Sd197] gi|308927543|gb|EFP73015.1| signal recognition particle protein [Shigella dysenteriae 1617] Length = 453 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 158/308 (51%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V++ L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V + + ++ N + P V+L+ G+ G GKTT +GKL Sbjct: 62 HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A+ Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQRPVDIVNAALKEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K DVL++DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF + Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|52424574|ref|YP_087711.1| Ffh protein [Mannheimia succiniciproducens MBEL55E] gi|52306626|gb|AAU37126.1| Ffh protein [Mannheimia succiniciproducens MBEL55E] Length = 463 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 99/305 (32%), Positives = 160/305 (52%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + +I RL +D +++ L ++ L+ +D+ + V ++ + ++ Sbjct: 2 FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKESALG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V+ Q L V + + + ++ N S P VIL+ G+ G GKTT +GKL Sbjct: 62 EEVNKSLTPGQEFLKIVQKELESAMGESNESLNL-ASQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KV++ + D +R AAI QL+ A ADF S++ + +A A A+ Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLETLAQSVDADFFPSDVKKNPVDIAKAALADAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVLI+DTAGRLH + +M I ++ VL P L +DA TGQ+A + Sbjct: 181 LKFYDVLIVDTAGRLHVDGEMMDEIKRIHEVLN------PIETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|121635570|ref|YP_975815.1| signal recognition particle protein [Neisseria meningitidis FAM18] gi|120867276|emb|CAM11047.1| signal recognition particle protein [Neisseria meningitidis FAM18] gi|325137122|gb|EGC59718.1| signal recognition particle protein [Neisseria meningitidis M0579] Length = 456 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 153/286 (53%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + K ++V+ Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALV 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + + P V+L+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGKENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA GQ+A+ + F+ TG+++TKMDG Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299 >gi|300825114|ref|ZP_07105207.1| signal recognition particle protein [Escherichia coli MS 119-7] gi|300522386|gb|EFK43455.1| signal recognition particle protein [Escherichia coli MS 119-7] Length = 440 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 80/212 (37%), Positives = 117/212 (55%), Gaps = 13/212 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT +GKL K + + KV++ + D +R AAI QL+ A++ Sbjct: 84 AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG 143 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S++G + A K+A+ K DVL++DTAGRLH + +M I ++ Sbjct: 144 VDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQV-------- 195 Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 HA P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I Sbjct: 196 -HASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 254 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ FLGVGE LEPF ++ I G D Sbjct: 255 KPIKFLGVGEKTEALEPFHPDRIASRILGMGD 286 >gi|126460331|ref|YP_001056609.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pyrobaculum calidifontis JCM 11548] gi|171855105|sp|A3MWX6|SRP54_PYRCJ RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|126250052|gb|ABO09143.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pyrobaculum calidifontis JCM 11548] Length = 431 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 86/232 (37%), Positives = 122/232 (52%), Gaps = 12/232 (5%) Query: 84 VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143 VLY+ EL+ L+ +P + + +P+V+L++GV G GKTT KL+K ++ G KV Sbjct: 75 VLYE--ELVK--LLGGEQPAEFKPTKKPYVVLLLGVEGSGKTTTAAKLAKYLAKRGYKVG 130 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 L DT R AA DQLK A++ F G +A +A + K +DV+IIDTAG Sbjct: 131 LVETDTIRPAAFDQLKQLAEKIGVPFYGERDGKNAVEIAVRGVQNF--KNMDVVIIDTAG 188 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 R N L+ + + +K P V V+DAT G+ A Q E F +I+ Sbjct: 189 RHRNEEELLKEVKAIYDAVK------PDEVFLVIDATVGKLAAAQAEAFMKYLPIHSVII 242 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TKMD TARGGG + V V F+GVGE +++ E F + F A + G D Sbjct: 243 TKMDSTARGGGALAAVAKTGARVKFIGVGEDVDEFELFNPRKFVARVLGMGD 294 >gi|58267554|ref|XP_570933.1| Signal recognition particle 54 kDa protein [Cryptococcus neoformans var. neoformans JEC21] gi|134112227|ref|XP_775089.1| hypothetical protein CNBE3630 [Cryptococcus neoformans var. neoformans B-3501A] gi|50257741|gb|EAL20442.1| hypothetical protein CNBE3630 [Cryptococcus neoformans var. neoformans B-3501A] gi|57227167|gb|AAW43626.1| Signal recognition particle 54 kDa protein, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 591 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 95/290 (32%), Positives = 142/290 (48%), Gaps = 30/290 (10%) Query: 43 DGVREELEDLLIRSDIGVAVAQKI--------------VEELLTKRYAKDVSVQRVLYDV 88 DGV +EL L+ SD+ V + + E+ + K VQ+ ++D Sbjct: 29 DGVLKELCAALLESDVNVKLVASLRTKVKTKVKKSLEESEKAGGREANKKNVVQKAVFD- 87 Query: 89 SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 EL+ ++ P ++P+ + +V++ VG+ G GKTT KL+ G + L D Sbjct: 88 -ELVA-LVDPGTEPYK-PVKGKTNVLMAVGIQGAGKTTTCTKLAVHYQRRGFRTCLVCAD 144 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+ A DQLK A + F S +D A+A ++ + ++ DV+I+DT+GR Sbjct: 145 TFRAGAFDQLKQNATKAKIPFYGSYTETDPVAIASLGVEKFRKERFDVIIVDTSGRHKQE 204 Query: 209 SIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 S L M IG ++ P L VLDA+ GQ A Q F A +I+TK Sbjct: 205 SELFEEMVAIGAAVK---------PDMTLMVLDASIGQAAEGQSRAFKDSADFGAIIVTK 255 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +DG A+GGG I V K P+ FLG GE +NDLE F + F + + G D Sbjct: 256 LDGHAKGGGAISAVAATKTPIIFLGTGEHLNDLERFAPQPFISKLLGMGD 305 >gi|325479005|gb|EGC82106.1| signal recognition particle protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 445 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 97/305 (31%), Positives = 157/305 (51%), Gaps = 19/305 (6%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F S +L+E + + +S + +D +RE + L+ +D+ V + V+ + + Sbjct: 3 FEGLSERLQETLGKLTGKGKLSEKDIDAAMRE-IRLSLLEADVNYKVVKDFVKTIKERSL 61 Query: 76 AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +DV Q V+ V+E + ++ + ++ S PH++++VG+ G GKTT GK Sbjct: 62 GQDVMTSLSPGQMVVKIVNEELTALMGKENSKLDFKGST-PHIVMMVGLQGSGKTTHSGK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K+ + ML A D +R AAI+QLK+ +T+ V + D A EA A+ Sbjct: 121 LALKLKNENRNPMLTALDIYRPAAIEQLKVVG-KTAGVEVFDKDKQDPVKTAKEAKDYAR 179 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + DV+I+DTAGRL ++ LM + + + P +L V+DA TGQ A+ + Sbjct: 180 SNNHDVIILDTAGRLQIDTDLMDELKNIKEAVN------PDEILLVVDAMTGQEAVNVAK 233 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F TG+I+TK+DG ARGG + I P+ F+GVGE + DLEPF + I Sbjct: 234 TFDEYLDITGVILTKLDGDARGGAALSIRQVVGKPIKFIGVGEKLEDLEPFHPDRMANRI 293 Query: 311 TGCLD 315 G D Sbjct: 294 LGMGD 298 >gi|158337260|ref|YP_001518435.1| signal recognition particle protein [Acaryochloris marina MBIC11017] gi|158307501|gb|ABW29118.1| signal recognition particle protein [Acaryochloris marina MBIC11017] Length = 476 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 92/289 (31%), Positives = 144/289 (49%), Gaps = 17/289 (5%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--EL 91 D IS + D +RE + L+ +D+ + V + +EE+ +V + V D ++ Sbjct: 20 DKISESNIQDALRE-VRRALLEADVNLQVVKDFIEEVRESALGAEV-ITGVQPDQQFIKI 77 Query: 92 IHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 +H L+ + N + P VIL+ G+ G GKTT KL+ + +L A D Sbjct: 78 VHDQLVEIMGATNEPLAESNKPPTVILMAGLQGTGKTTATAKLALHLRKQEQTSLLVATD 137 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLH 206 +R AAIDQL ++ D ++G+DA +A + A+ + VD +I+DTAGRL Sbjct: 138 IYRPAAIDQLVTLGEQI--DVPVFQLGTDANPVEIARQGLAAAREQNVDTVIVDTAGRLQ 195 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + +M+ + + + +K P L V+DA TGQ A + FH G TG I+TKM Sbjct: 196 IDPEMMSELADIKKAIK------PDETLLVVDAMTGQEAANLTQTFHDQIGITGAILTKM 249 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG RGG + I P+ F+GVGE + L+PF ++ I G D Sbjct: 250 DGDTRGGAALSIRQISGKPIKFVGVGEKVEALQPFYPDRMASRILGMGD 298 >gi|145219743|ref|YP_001130452.1| signal recognition particle subunit FFH/SRP54 (srp54) [Prosthecochloris vibrioformis DSM 265] gi|145205907|gb|ABP36950.1| signal recognition particle subunit FFH/SRP54 (srp54) [Chlorobium phaeovibrioides DSM 265] Length = 449 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 86/268 (32%), Positives = 138/268 (51%), Gaps = 12/268 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V +K+VE++ K + V Q ++ VS+ + +++ KP Sbjct: 38 LLGADVNYKVVKKLVEDVRQKSLGEGVIKSVSPAQMIVKIVSDELTELMGGEQKPLALSS 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P V++V G+ G GKTT KL+K++ +G +L A D +R AA+DQLK S Sbjct: 98 SRLPAVVMVAGLQGSGKTTFAAKLAKRLKKSGRNPLLVAADVYRPAAVDQLKTLGAEVSV 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 E DA +A + + A+A DVLI+DTAGRL + +MA + LK Sbjct: 158 PVFSIE-EKDAMKVAMQGLEAAKAGAHDVLIVDTAGRLQIDDAMMAEAEALKNALK---- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ GQ A+ + F+ G+++TK+DG +RGG + I + P+ Sbjct: 213 --PDELLFVVDSMMGQEAVNTAKAFNDRLDFDGVVLTKLDGDSRGGAALSIRHVVEKPIK 270 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ VGE ++DL+ F + I G D Sbjct: 271 FMSVGEKVDDLDQFYPDRMAQRILGMGD 298 >gi|321259271|ref|XP_003194356.1| signal recognition particle 54 kDa protein [Cryptococcus gattii WM276] gi|317460827|gb|ADV22569.1| Signal recognition particle 54 kDa protein, putative [Cryptococcus gattii WM276] Length = 590 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 99/294 (33%), Positives = 143/294 (48%), Gaps = 38/294 (12%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK------------------DVSVQRV 84 D V +EL L+ SD+ V K+V L TK AK VQ+ Sbjct: 29 DSVLKELCAALLESDVNV----KLVASLRTKVKAKVKKSLEESEKAGGREANKKNVVQKA 84 Query: 85 LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 ++D EL+ ++ P ++P+ + +V++ VG+ G GKTT KL+ G + L Sbjct: 85 VFD--ELVA-LVDPGTEPYK-PVKGKTNVLMAVGIQGAGKTTTCTKLAVHYQRRGFRTCL 140 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 DTFR+ A DQLK A + F S +D A+A ++ + ++ DV+I+DT+GR Sbjct: 141 VCADTFRAGAFDQLKQNATKAKIPFYGSYTETDPVAIASLGVEKFRKERFDVIIVDTSGR 200 Query: 205 LHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 S L M IG ++ P L VLDA+ GQ A Q F A + Sbjct: 201 HKQESELFEEMVAIGAAVK---------PDMTLMVLDASIGQAAEGQSRAFKDSADFGAI 251 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I+TK+DG A+GGG I V K P+ FLG GE +NDLE F + F + + G D Sbjct: 252 IVTKLDGHAKGGGAISAVAATKTPIIFLGTGEHLNDLERFAPQPFISKLLGMGD 305 >gi|20807909|ref|NP_623080.1| Signal recognition particle GTPase [Thermoanaerobacter tengcongensis MB4] gi|20516476|gb|AAM24684.1| Signal recognition particle GTPase [Thermoanaerobacter tengcongensis MB4] Length = 447 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 87/268 (32%), Positives = 139/268 (51%), Gaps = 12/268 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + + + K ++V Q+V+ V E + K++ + N Sbjct: 40 LLEADVNFKVVKDFINSVTEKALGQEVMESLTPAQQVIKIVHEELIKLMGSVESRLNLG- 98 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P VI++VG+ G GKTT GKL+ + G +L A DT R AAI QL++ + Sbjct: 99 SKVPAVIMMVGLQGSGKTTACGKLANLLKKQGKNPLLVACDTVRPAAIKQLQVLGANINV 158 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 D A +A + A++ VDV+IIDTAGRLH + LM +++R+ + + P Sbjct: 159 PVFTMGDKVDTADIAKASIDYAKSHNVDVVIIDTAGRLHIDDELME---ELVRIKEAVHP 215 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 +L V DA TGQ+A+ F+ TG+I+TK+DG RGG + I + P+ Sbjct: 216 D---EILLVADAMTGQDAVNVASSFNERLDITGVILTKLDGDTRGGAALSIKAVTQKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 ++G+GE + D+EPF ++ I G D Sbjct: 273 YVGIGEKLGDIEPFYPDRMASRILGMGD 300 >gi|217967920|ref|YP_002353426.1| signal recognition particle protein [Dictyoglomus turgidum DSM 6724] gi|217337019|gb|ACK42812.1| signal recognition particle protein [Dictyoglomus turgidum DSM 6724] Length = 436 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 93/288 (32%), Positives = 150/288 (52%), Gaps = 21/288 (7%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87 ++ + +++ +RE + L+ +D V ++++ + TK +DV + R+LY Sbjct: 22 LTEKDIEEALRE-VRQALLEADAHYKVVKELLNNVKTKALQEDVLKSVTPAEQIIRILY- 79 Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 EL++ +L N +P +ILVVG+ G GKTT KL+ ++S +V+L Sbjct: 80 -YELLN-ILGGEKVDLNLG-DKKPGIILVVGLQGSGKTTTCAKLAYRLSQEQRRVLLVGA 136 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DTFR AA QL+I ++ GS+ + A K A+ K DV+I+DT GRLH Sbjct: 137 DTFRPAAGKQLQILGEKIKVPVYID--GSNPFEIIDGALKVAREKFSDVMIVDTTGRLHI 194 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + +M + ++ + + P +L V+D TGQ+A+ E F+ TG+I+TKMD Sbjct: 195 DEEMMNELSELNK------RYHPSEILLVVDGMTGQDAVNIAEKFNEKLPLTGVILTKMD 248 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G ARGG + + P+ F+GVGE I DLE F ++ I G D Sbjct: 249 GDARGGAALSVKAITGKPIKFIGVGEKIEDLEYFYPDRLASRILGMGD 296 >gi|19075709|ref|NP_588209.1| signal recognition particle subunit Srp54 [Schizosaccharomyces pombe 972h-] gi|134887|sp|P21565|SRP54_SCHPO RecName: Full=Signal recognition particle 54 kDa protein homolog; Short=SRP54 gi|5096|emb|CAA35951.1| signal recognition particle [Schizosaccharomyces pombe] gi|173491|gb|AAA35344.1| signal recognition particle 54 kDa subunit [Schizosaccharomyces pombe] gi|4678686|emb|CAB41226.1| signal recognition particle subunit Srp54 [Schizosaccharomyces pombe] Length = 522 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 92/277 (33%), Positives = 138/277 (49%), Gaps = 24/277 (8%) Query: 45 VREELEDLLIR--------SDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYDVSELI 92 V EEL D L++ +D+ V + Q++ + K + ++ +R+ V + + Sbjct: 23 VNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKINVSTLPQGINGKRI---VQKAV 79 Query: 93 HKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 L L P F+ RP VI++VG+ G GKTT KL+ GLK L A DT Sbjct: 80 FDELCSLVDPKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADT 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+ A DQLK A + + S +D +A E + + + DV+I+DT+GR Sbjct: 140 FRAGAFDQLKQNAIKARVPYFGSYTETDPVVIAKEGVDKFKNDRFDVIIVDTSGRHQQEQ 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 L A +M+ + D P + +LDA+ GQ A Q + F A +I+TK+DG Sbjct: 200 ELFA---EMVEI---SDAIRPDQTIMILDASIGQAAESQSKAFKETADFGAVIITKLDGH 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 A+GGG + V K P+ F+G GE INDLE F + F Sbjct: 254 AKGGGALSAVAATKTPIVFIGTGEHINDLERFSPRSF 290 >gi|239612234|gb|EEQ89221.1| signal recognition particle protein SRP54 [Ajellomyces dermatitidis ER-3] gi|327353181|gb|EGE82038.1| signal recognition particle protein [Ajellomyces dermatitidis ATCC 18188] Length = 533 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 146/301 (48%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ + D+ S LD D + +E+ L+ +D+ V + Q + + + L Sbjct: 9 RINAAVNDLTRSNNLDEQAFDAMIKEICAALLSADVNVRLVQSLRKSIKAAVPFSSLPPA 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D +L+ ++ P ++PF R +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKTVFD--QLV-ALVDPHAEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G + L DTFR+ A DQLK A + + S +D A +A E + + ++ Sbjct: 125 YQTRGFRAALVCADTFRAGAFDQLKQNATKAKIPYFGSLTQTDPAVVAAEGVAKFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D++I+DT+GR L + ++ +K P + VLD T GQ A Q F A Sbjct: 185 DIIIVDTSGRHKQEEDLFTEMTQIQTAIK------PDQTILVLDGTIGQAAESQSAAFKA 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG+A GGG I V P+ FLG GE + DLE F K F + G Sbjct: 239 TADFGAIIITKTDGSAAGGGAISAVAATHTPIIFLGTGEHMLDLERFAPKPFIQKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|222100122|ref|YP_002534690.1| Signal recognition particle protein [Thermotoga neapolitana DSM 4359] gi|221572512|gb|ACM23324.1| Signal recognition particle protein [Thermotoga neapolitana DSM 4359] Length = 433 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 89/285 (31%), Positives = 148/285 (51%), Gaps = 15/285 (5%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 I+ + + D VRE ++ L+ +D+ V ++ V+ +L K ++V Q+ + V + Sbjct: 22 ITEKNVKDAVRE-VKLSLLEADVNYKVVKEFVDHVLQKALGEEVLKSLTPDQQFIKIVRD 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + K++ ++P HRP I++VG+ G GKTT KL+K + G +L A D + Sbjct: 81 ELIKIMGEKNEPLR--LIHRPAPIMMVGLQGSGKTTTCAKLAKLLKKEGRNPLLVAADLY 138 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AA+DQL ++ + V + + E ++A+ DVLI+DTAGRLH + Sbjct: 139 RPAAVDQLVKLGNQIGVN-VVHDYNKSPVEIVKEGIQEAERTGKDVLIVDTAGRLHIDED 197 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 +M + ++ +L P +L V+DA GQ+A+ ++F TG ++TKMDG A Sbjct: 198 MMRELEEIKAILN------PDEILLVVDAMMGQDAVNTAKVFDERLDLTGFVVTKMDGDA 251 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG ++ I PV F+G E ++ LEPF + I G D Sbjct: 252 RGGVILSIKYVTGKPVKFIGTSEKLDGLEPFHPDRIANRILGMGD 296 >gi|148270357|ref|YP_001244817.1| signal recognition particle protein [Thermotoga petrophila RKU-1] gi|147735901|gb|ABQ47241.1| signal recognition particle subunit FFH/SRP54 (srp54) [Thermotoga petrophila RKU-1] Length = 433 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 88/285 (30%), Positives = 149/285 (52%), Gaps = 15/285 (5%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 I+ + + D +RE ++ L+ +D+ V ++ V+ +L K ++V Q+ + V + Sbjct: 22 ITEKNVKDAIRE-VKLSLLEADVNYKVVKEFVDHVLQKALGEEVLRSLTPDQQFIKIVRD 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + +++ ++P HRP I++VG+ G GKTT KL+K + G +L A D + Sbjct: 81 ELVRIMGEKNEPLR--LVHRPAPIMMVGLQGSGKTTTCAKLAKLLKKEGRNPLLVAADLY 138 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AA+DQL ++ + V + + EA A++ D+LI+DTAGRLH + Sbjct: 139 RPAAVDQLVKLGNQIGIN-VVHDYNKTPVEIVKEAVDVAESTGKDILIVDTAGRLHIDEE 197 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 +M + ++ ++L P +L V+DA GQ+A+ ++F TG ++TKMDG A Sbjct: 198 MMKELEEIKKILN------PDEILLVVDAMMGQDAVNTAKVFDERLDLTGFVVTKMDGDA 251 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG ++ I PV F+G E I+ LEPF + I G D Sbjct: 252 RGGVILSIKYVTGKPVKFIGTSEKIDGLEPFHPDRIANRILGMGD 296 >gi|224138482|ref|XP_002322825.1| predicted protein [Populus trichocarpa] gi|222867455|gb|EEF04586.1| predicted protein [Populus trichocarpa] Length = 576 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 97/309 (31%), Positives = 156/309 (50%), Gaps = 23/309 (7%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----- 70 +LT G S KLK ++++ + + +R+ + L+ +D+ + V ++ V+ + Sbjct: 92 QLTSGLESAWNKLKG--EEVLTKENIVEPMRD-IRRALLEADVSLPVVRRFVQSVSDQAV 148 Query: 71 ---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126 L + D + ++++D EL+ M +S+ F+ P VIL+ G+ GVGKTT Sbjct: 149 GVGLVRGVKPDQQLVKIVHD--ELVKLMGGEVSELV---FAKSAPTVILLAGLQGVGKTT 203 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 V KL+ + G ML AGD +R AAIDQL I ++ + +A + Sbjct: 204 VCAKLANYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTEGTDVKPSEIARKGL 263 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 +A+ K +DV+I+DTAGRL + +M + + +L P VL V+DA TGQ A Sbjct: 264 SEAKKKNIDVVIVDTAGRLQIDKGMMDELKDVKLILN------PTEVLLVVDAMTGQEAA 317 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 V F+ G TG I+TK+DG +RGG + + P+ +G GE + DLEPF Sbjct: 318 ALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPNRM 377 Query: 307 SAVITGCLD 315 + I G D Sbjct: 378 AGRILGMGD 386 >gi|223042041|ref|ZP_03612218.1| signal recognition particle protein (sigma-54 like protein) [Actinobacillus minor 202] gi|223017158|gb|EEF15593.1| signal recognition particle protein (sigma-54 like protein) [Actinobacillus minor 202] Length = 362 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 81/206 (39%), Positives = 113/206 (54%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT +GKL+K + + KV++ + D +R AAI QL+ A+ DF Sbjct: 2 PAVILMAGLQGAGKTTSVGKLAKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDF 61 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 +E +A A K A+ DVLI+DTAGRLH + +M I ++ VL Sbjct: 62 FPTETSQKPVEIAEVALKHAKLNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLN------ 115 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L +DA TGQ+A + F+ TG+I+TK+DG ARGG + I P+ FL Sbjct: 116 PIETLFTVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFL 175 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE + LEPF ++ I G D Sbjct: 176 GVGEKTDALEPFHPDRIASRILGMGD 201 >gi|297810481|ref|XP_002873124.1| hypothetical protein ARALYDRAFT_487173 [Arabidopsis lyrata subsp. lyrata] gi|297318961|gb|EFH49383.1| hypothetical protein ARALYDRAFT_487173 [Arabidopsis lyrata subsp. lyrata] Length = 562 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 99/318 (31%), Positives = 161/318 (50%), Gaps = 28/318 (8%) Query: 12 SWIR-----KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 S++R +LT G + KLK ++++ + + +R+ + L+ +D+ + V ++ Sbjct: 69 SYVRAEMFGQLTGGLEAAWSKLKG--EEVLTKENIAEPMRD-IRRALLEADVSLPVVRRF 125 Query: 67 VEEL--------LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVV 117 V+ + + + D + ++++D EL+ M +S+ F+ P VIL+ Sbjct: 126 VQSVSDQAVGMGVIRGVKPDQQLVKIVHD--ELVKLMGGEVSE---LQFAKSGPTVILLA 180 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 G+ GVGKTTV KL+ + G ML AGD +R AAIDQL I ++ + Sbjct: 181 GLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTAGTDVK 240 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 A +A + K+A+ VDV+I+DTAGRL + +M + + + L P VL V+ Sbjct: 241 PADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDELKDVKKFLN------PTEVLLVV 294 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA TGQ A V F+ G TG I+TK+DG +RGG + + P+ +G GE + D Sbjct: 295 DAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMED 354 Query: 298 LEPFVAKDFSAVITGCLD 315 LEPF + I G D Sbjct: 355 LEPFYPDRMAGRILGMGD 372 >gi|238899329|ref|YP_002925012.1| 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229467090|gb|ACQ68864.1| 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 453 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 99/307 (32%), Positives = 160/307 (52%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL ++ ++ L ++ L+ +D+ ++V + ++ + K+ A Sbjct: 2 FNNLTERLSRTLRNISGRGRLTEENIKTSLREVRVALLDADVALSVVRDFIQRV--KKKA 59 Query: 77 KDVSVQRVLYDVSELI----HKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIG 129 + + L E I ++M + + FN + + P VIL+ G+ G GKTT + Sbjct: 60 MGHEINKSLTPGQEFIKIVKNEMTSAMGE-FNTELNLATQPPAVILMAGLQGAGKTTSVV 118 Query: 130 KLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL K +++ KV+L + D +R AAI QL+ A S +F S + + +A K Sbjct: 119 KLGKFITEKQKKKVLLVSVDVYRPAAIKQLETLAQSVSIEFFPSHFEENPVDIVTQALKH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DVLI+DTAGRLH + +M I ++ L P L V+DA TGQ+A Sbjct: 179 AKLKFYDVLIVDTAGRLHVDENMMNEIKQLHLSLD------PVETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F+ V TG+I+TK+DG ARGG + I P+ FLGVGE LEPF + ++ Sbjct: 233 AKAFNEVLPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFYPERIAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|261346219|ref|ZP_05973863.1| signal recognition particle protein [Providencia rustigianii DSM 4541] gi|282565525|gb|EFB71060.1| signal recognition particle protein [Providencia rustigianii DSM 4541] Length = 453 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 163/306 (53%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL DD +++ L ++ L+ +D+ + V ++ ++++ Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTDDNIKDTLREVRMALLEADVALPVVREFIQKVKESAVG 61 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHRPHVILVVGVNGVGKTTVIGK 130 +DV+ + L E I + L++ + + P V+L+ G+ G GKTT + K Sbjct: 62 QDVN--KSLTPGQEFIKIVQNELTRAMGEENHQLNLSAQPPAVVLMAGLQGAGKTTSVAK 119 Query: 131 LSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + K +L + D +R AAI QL+ A+ S DF S+ A++ +A K A Sbjct: 120 LGKLLKEKQKKKVLVVSADVYRPAAIKQLETLAEAVSIDFFPSDAQEKPASIVQKALKHA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 Q + DVL++DTAGRLH + ++M I ++ R++ P L V+DA TGQ+A Sbjct: 180 QLQFYDVLLVDTAGRLHVDEVMMEEIQEIHRIIN------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+++TK+DG ARGG + I P+ FLGVGE + LEPF + ++ Sbjct: 234 KAFNEALPLTGIVLTKVDGDARGGAALSIRAITGKPIKFLGVGEKTDALEPFHPERVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|15644313|ref|NP_229365.1| signal recognition particle protein [Thermotoga maritima MSB8] gi|170289017|ref|YP_001739255.1| signal recognition particle protein [Thermotoga sp. RQ2] gi|4982134|gb|AAD36632.1|AE001802_1 signal recognition particle protein [Thermotoga maritima MSB8] gi|170176520|gb|ACB09572.1| signal recognition particle protein [Thermotoga sp. RQ2] Length = 433 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 88/285 (30%), Positives = 149/285 (52%), Gaps = 15/285 (5%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 I+ + + D +RE ++ L+ +D+ V ++ V+ +L K ++V Q+ + V + Sbjct: 22 ITEKNVKDAIRE-VKLSLLEADVNYKVVKEFVDHVLQKALGEEVLRSLTPDQQFIKIVRD 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + +++ ++P HRP I++VG+ G GKTT KL+K + G +L A D + Sbjct: 81 ELVRIMGEKNEPLR--LVHRPAPIMMVGLQGSGKTTTCAKLAKLLKKEGRNPLLVAADLY 138 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AA+DQL ++ + V + + EA A++ DVLI+DTAGRLH + Sbjct: 139 RPAAVDQLVKLGNQIGVN-VVHDYNKTPVEIVKEAVDVAESTGKDVLIVDTAGRLHIDEE 197 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 +M + ++ ++L P +L V+DA GQ+A+ ++F TG ++TKMDG A Sbjct: 198 MMKELEEIKKILN------PDEILLVVDAMMGQDAVNTAKVFDERLDLTGFVVTKMDGDA 251 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG ++ I PV F+G E ++ LEPF + I G D Sbjct: 252 RGGVILSIKYVTGKPVKFIGTSEKLDGLEPFHPDRIANRILGMGD 296 >gi|284106929|ref|ZP_06386309.1| signal recognition particle-docking protein FtsY [Candidatus Poribacteria sp. WGA-A3] gi|283830002|gb|EFC34279.1| signal recognition particle-docking protein FtsY [Candidatus Poribacteria sp. WGA-A3] Length = 194 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/195 (41%), Positives = 117/195 (60%), Gaps = 6/195 (3%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-LTKRYAKDVSVQRVLYDVSELIHKMLM 97 R LD V EE+E L+ +D+GV A +++E L T S+Q + +++++ + Sbjct: 3 RGLDPEVLEEVEASLLGADVGVRTADRLLERLRATAGGDPRESIQELKRAMADILASVE- 61 Query: 98 PLSKPFNW--DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 SKP + +P VIL VGVNGVGKTT + KL+ ++ GL +L A DTFR+AAI Sbjct: 62 --SKPIDELVRTGPKPFVILAVGVNGVGKTTSMAKLAGRLRKQGLTPLLVAADTFRAAAI 119 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 +QL++W R AD + G+D +A+ ++ A+A+ VDV++IDTAGRLH LM + Sbjct: 120 EQLEVWGKRIGADVIKHRQGADPSAVVFDGLAAAKARGVDVMLIDTAGRLHTKVNLMDEL 179 Query: 216 GKMIRVLKRLDPHAP 230 KM RVL R P AP Sbjct: 180 KKMKRVLDREYPGAP 194 >gi|294657854|ref|XP_460149.2| DEHA2E19404p [Debaryomyces hansenii CBS767] gi|199432996|emb|CAG88422.2| DEHA2E19404p [Debaryomyces hansenii] Length = 541 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 78/204 (38%), Positives = 110/204 (53%), Gaps = 6/204 (2%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 HVI+ VG+ G GKTT KL+ G KV L DTFR+ A DQLK A ++S + Sbjct: 94 HVIMFVGLQGAGKTTSCTKLAVYYKKRGYKVGLVCADTFRAGAFDQLKQNAIKSSIPYYG 153 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 S I +D +AYE + + +K D++I+DT+GR L +MI++ + + P Sbjct: 154 SYIETDPVKVAYEGVVKFKQEKFDIIIVDTSGRHKQEQSL---FNEMIQISEMI---VPT 207 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 + V+D + GQ A Q + F + +I+TKMDG ARGGG I V T K P+ F+G Sbjct: 208 QTIMVMDGSIGQAAESQAKAFKESSQFGSIILTKMDGHARGGGAISAVATTKTPIVFIGT 267 Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315 GE DLE F F + + G D Sbjct: 268 GEHATDLEIFKPTSFISKLLGIGD 291 >gi|261400534|ref|ZP_05986659.1| signal recognition particle protein [Neisseria lactamica ATCC 23970] gi|269209797|gb|EEZ76252.1| signal recognition particle protein [Neisseria lactamica ATCC 23970] Length = 456 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 152/286 (53%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + K ++V+ Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVADSLTPDQAFIGVVNKALT 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + + P V+L+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGKENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA GQ+A+ + F+ TG+++TKMDG Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGIVLTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GVGE IN LEPF + I G D Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRIAGRILGMGD 299 >gi|225848834|ref|YP_002728998.1| signal recognition particle protein [Sulfurihydrogenibium azorense Az-Fu1] gi|225643694|gb|ACN98744.1| signal recognition particle protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 442 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 98/309 (31%), Positives = 155/309 (50%), Gaps = 24/309 (7%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 LT+ F+S KL++ I + LD+ +++ + L+ +D+ V V +K + ++ K Sbjct: 5 LTEKFSSVIDKLRKAKK--IDEKTLDEALKD-IRTALLEADVNVDVVKKFIADIKQKVLG 61 Query: 77 KDV--------SVQRVLYDVSELIHKMLMP--LSKPFNWDFSHRPHVILVVGVNGVGKTT 126 +++ +V +++YD + I P L+KP P +I++VG+ G GKTT Sbjct: 62 QELIKGLSAGETVIKLIYDETINILGGEEPPTLAKP-----DKPPAIIMLVGLQGTGKTT 116 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 GKL+K + G +V +A+ D R AA QL A E DA L + Sbjct: 117 TAGKLAKYLKSKGYRVGVASTDVRRPAAAKQLCTLAQSIDVPCFVDEQEKDALKLTEKVI 176 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+ + +I+DTAGRLH + LM + ++ +K P VL V DA GQ A+ Sbjct: 177 EDAKKQGFSYIILDTAGRLHIDQELMEELKQIKEKVK------PAEVLYVADAMQGQEAI 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 E FH G TG+I+TK+DG A+GG + + IP+ F+G GE I DL+ F Sbjct: 231 TTAEEFHKAVGLTGVILTKLDGDAKGGIALSVRQVLGIPIKFVGTGEKIEDLDLFYPDRI 290 Query: 307 SAVITGCLD 315 + I G D Sbjct: 291 AQRILGLGD 299 >gi|299137338|ref|ZP_07030520.1| signal recognition particle protein [Acidobacterium sp. MP5ACTX8] gi|298600743|gb|EFI56899.1| signal recognition particle protein [Acidobacterium sp. MP5ACTX8] Length = 460 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 94/277 (33%), Positives = 149/277 (53%), Gaps = 19/277 (6%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSE 90 ++ ++D +RE + L+ SD+ + VA+ ++E + TK V+ ++++ V + Sbjct: 22 LTDENINDALRE-IRLALLESDVNLNVAKDLIEHIRTKALGSQVATALSPAEQIVKIVRD 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + ++L + F + S P VIL+ G+ G GKTT GKL++ + G + ML + D + Sbjct: 81 ELVEVLGRDTARFKF-ASQPPTVILMAGLQGSGKTTTSGKLAQWLKKGGHRPMLVSVDVY 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAA------LAYEAFKQAQAKKVDVLIIDTAGR 204 R AA +QLK+ A +A + +AA LA EA ++A D+LI+DTAGR Sbjct: 140 RPAAREQLKVVAQSINAQIYEGDTKGEAAGTPLVERLAREARREAANYGCDILIVDTAGR 199 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 L + LM +M + K+L+P +L V DA TGQ+A+ + F+ TG I+T Sbjct: 200 LGIDEALME---EMALLKKQLNPS---EILFVADAMTGQDAVNSAKAFNDKLTITGSILT 253 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 KMDG +RGG + I PV FLG GE + EPF Sbjct: 254 KMDGDSRGGAALSIRQITGQPVKFLGTGEKSDAFEPF 290 >gi|226739|prf||1604366A signal recognition particle 54kD protein Length = 522 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 92/277 (33%), Positives = 138/277 (49%), Gaps = 24/277 (8%) Query: 45 VREELEDLLIR--------SDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYDVSELI 92 V EEL D L++ +D+ V + Q++ + K + ++ +R+ V + + Sbjct: 23 VNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKINVSTLPQGINGKRI---VQKAV 79 Query: 93 HKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 L L P F+ RP VI++VG+ G GKTT KL+ GLK L A DT Sbjct: 80 FDELCSLVDPKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADT 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+ A DQLK A + + S +D +A E + + + DV+I+DT+GR Sbjct: 140 FRAGAFDQLKQNAIKARVPYFGSYTETDPVVIAKEGVDKFKNDRFDVIIVDTSGRHQQEQ 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 L A +M+ + D P + +LDA+ GQ A Q + F A +I+TK+DG Sbjct: 200 ELFA---EMVEI---SDAIRPDQTIMILDASIGQAAESQSKAFKETADFGAVIITKLDGH 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 A+GGG + V K P+ F+G GE INDLE F + F Sbjct: 254 AKGGGALSAVAATKTPIVFIGTGEHINDLERFSPRSF 290 >gi|238854767|ref|ZP_04645097.1| signal recognition particle protein [Lactobacillus jensenii 269-3] gi|260663999|ref|ZP_05864852.1| signal recognition particle protein [Lactobacillus jensenii SJ-7A-US] gi|282933845|ref|ZP_06339193.1| signal recognition particle protein [Lactobacillus jensenii 208-1] gi|313472284|ref|ZP_07812776.1| signal recognition particle protein [Lactobacillus jensenii 1153] gi|238832557|gb|EEQ24864.1| signal recognition particle protein [Lactobacillus jensenii 269-3] gi|239529871|gb|EEQ68872.1| signal recognition particle protein [Lactobacillus jensenii 1153] gi|260561885|gb|EEX27854.1| signal recognition particle protein [Lactobacillus jensenii SJ-7A-US] gi|281301934|gb|EFA94188.1| signal recognition particle protein [Lactobacillus jensenii 208-1] Length = 475 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 100/316 (31%), Positives = 163/316 (51%), Gaps = 23/316 (7%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A E+LS ++ K + + K K DI ++ R E+ L+ +D+ V + Sbjct: 1 MAFENLS--ERIQKALKNLTGKGKVSEADINAASR-------EIRLALLEADVNFKVVKD 51 Query: 66 IVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 ++++ + ++V Q+++ V++ + KM+ + N H P +I++VG+ Sbjct: 52 FIKKIKERALGQEVQGSLTPGQQIIKIVNDELTKMMGEEAAKLNK-APHIPTIIMMVGLQ 110 Query: 121 GVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 G GKTT +GKL+K + D + +L AGD +R AAIDQLK D+ S V SE D A Sbjct: 111 GTGKTTTVGKLAKYLMDTEKARPLLIAGDIYRPAAIDQLKQIGDQLSVP-VFSEDEKDVA 169 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 + + QA+ K D ++IDTAGRL + LM + ++ V K P +++ V+DA Sbjct: 170 KIVADGLAQAKEAKNDYVLIDTAGRLEIDEALMEELERVKAVAK------PDNIVLVVDA 223 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQ + E F TG+I+TK+DG RGG + I P+ F G GE +++LE Sbjct: 224 MTGQVGAQVAETFDKRLDVTGVILTKLDGDTRGGAALSIRAVTGKPILFTGQGEKLSELE 283 Query: 300 PFVAKDFSAVITGCLD 315 F ++ I G D Sbjct: 284 GFYPDRMASRILGMGD 299 >gi|326791391|ref|YP_004309212.1| signal recognition particle protein [Clostridium lentocellum DSM 5427] gi|326542155|gb|ADZ84014.1| signal recognition particle protein [Clostridium lentocellum DSM 5427] Length = 446 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 91/270 (33%), Positives = 143/270 (52%), Gaps = 16/270 (5%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE-LIHKMLMPLSKPFNWD 106 L+ +D+ V ++ ++ + + +V Q+V+ V+E LI+ M SK + Sbjct: 39 LLEADVNFKVVKQFIKTIEERAVGHEVMESLTPGQQVIKIVNEELINLMGSTQSK---IN 95 Query: 107 FSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 F+ R VI++VG+ G GKTT KLS + G + +L A D +R AAIDQL + Sbjct: 96 FAPRGITVIMMVGLQGAGKTTTSAKLSSHIKSQGKRPLLVACDVYRPAAIDQLTKVGKQV 155 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + +A A+ +DV+IIDTAGRLH + +LM + K I+ L + Sbjct: 156 NVPVFSMGSDKNPVDIAQAGVNYAKENNLDVVIIDTAGRLHIDEVLMDEL-KNIKALVK- 213 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P +L V+DA TGQ+A+ E F G G++MTK+DG +RGG + + P Sbjct: 214 ----PQEILLVVDAMTGQDAVNVAESFDQTLGLDGVVMTKLDGDSRGGAALSVKAVTNKP 269 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F+G+GE +NDLEPF + ++ I G D Sbjct: 270 IKFVGMGEKLNDLEPFHPERIASRILGMGD 299 >gi|254580797|ref|XP_002496384.1| ZYRO0C17138p [Zygosaccharomyces rouxii] gi|238939275|emb|CAR27451.1| ZYRO0C17138p [Zygosaccharomyces rouxii] Length = 536 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 79/215 (36%), Positives = 115/215 (53%), Gaps = 7/215 (3%) Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 +PF + +VI+ VG+ G GKTT KL+ S G KV L DTFR+ A DQLK Sbjct: 98 QPFQPK-KKKTNVIMFVGLQGSGKTTSCTKLAVYYSRRGFKVGLVCADTFRAGAFDQLKQ 156 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A + F S + +D +A E + + +K +V+I+DT+GR H L + ++ Sbjct: 157 NAIKAHIPFYGSYVETDPVKVAAEGIAKFKKEKFEVIIVDTSGRHHQEEALFQEMVEIST 216 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 V+ P+ + VLDA+ GQ A +Q + F A +++TKMDG A+GGG I V Sbjct: 217 VVN------PNQTIMVLDASIGQAAEQQSKAFKETADFGAILLTKMDGHAKGGGAISAVA 270 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE I+DLE F K F + + G D Sbjct: 271 ATNTPIIFIGTGEHIHDLERFSPKSFISKLLGIGD 305 >gi|124028501|ref|YP_001013821.1| Signal recognition particle GTPase [Hyperthermus butylicus DSM 5456] gi|171769654|sp|A2BNB5|SRP54_HYPBU RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|123979195|gb|ABM81476.1| Signal recognition particle GTPase [Hyperthermus butylicus DSM 5456] Length = 447 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 91/277 (32%), Positives = 143/277 (51%), Gaps = 18/277 (6%) Query: 48 ELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVSVQ----RVLYD-VSELIHKMLMP 98 +L+ LI +D+ V + ++I E L ++ +S + ++ YD + +L P Sbjct: 31 DLQRALISADVNVRLVFNLTKRIRERALKEQPPPGLSRREWLVKLTYDELVKLFGGEYEP 90 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 KP + P+VI++VGV G GKTT +GKL+K G +V + A DT+R A +QL Sbjct: 91 EVKP-----PYTPYVIMMVGVQGSGKTTTVGKLAKFYRGMGYRVGVVAADTYRPGAYEQL 145 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 K ADR A F D +A ++ + + D++I+DTAGR H A + +M Sbjct: 146 KQLADRAGAMFYGEPGSKDPVGIARRGVEELKQRGADIVIVDTAGR-HGYGEEEALLDEM 204 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 R+ + + P V+ V+DA GQ + + FH +I+TKMDGTA+GGG + Sbjct: 205 KRIAEAIK---PDEVVLVIDAAMGQKSYDLAKRFHEATPVGSIIVTKMDGTAKGGGALSA 261 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 V + F+G GE I+++E F K F A + G D Sbjct: 262 VAATGARIKFIGTGEDIDEIEVFRPKRFVARLLGMGD 298 >gi|50122282|ref|YP_051449.1| signal recognition particle protein [Pectobacterium atrosepticum SCRI1043] gi|49612808|emb|CAG76258.1| signal recognition particle protein [Pectobacterium atrosepticum SCRI1043] Length = 453 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 93/304 (30%), Positives = 154/304 (50%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL ++ ++E L ++ L+ +D+ + V + + + + Sbjct: 2 FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKERAVG 61 Query: 77 KDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGKLS 132 DV+ + +++ L+ N + + P V+L+ G+ G GKTT +GKL Sbjct: 62 HDVNKSLTPGQEFVKIVKNELVSAMGEINAELNLAAQPPAVVLMAGLQGAGKTTSVGKLG 121 Query: 133 KKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 K + + KV++ + D +R AAI QL+ A + DF S+ A+ A + A+ Sbjct: 122 KFLREKQKKKVLVVSADVYRPAAIKQLETLAQQVGVDFFPSDAQEKPLAIVERALQHAKL 181 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K DVL++DTAGRLH + +M I ++ +K P L V+DA TGQ+A + Sbjct: 182 KFYDVLLVDTAGRLHVDDAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTAKA 235 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ TG+I+TK+DG ARGG + I P+ FLGVGE LEPF ++ I Sbjct: 236 FNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFYPDRIASRIL 295 Query: 312 GCLD 315 G D Sbjct: 296 GMGD 299 >gi|262373325|ref|ZP_06066604.1| signal recognition particle protein [Acinetobacter junii SH205] gi|262313350|gb|EEY94435.1| signal recognition particle protein [Acinetobacter junii SH205] Length = 469 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 88/295 (29%), Positives = 158/295 (53%), Gaps = 25/295 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + ++ S +L +D +++ L ++ L+ +D+ + V ++ + ++ + Sbjct: 2 FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61 Query: 77 KDVSVQ--------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTV 127 ++V Q +++YD + KM+ ++ D S +P V+ L+ G+ G GKTT Sbjct: 62 QEVMTQLSPGQAFVKIVYDE---LTKMMGEANE--TLDLSAKPPVVVLLAGLQGAGKTTT 116 Query: 128 IGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL++ + + KVM + D +R AAI QL+ ++ F+ S+ + A Sbjct: 117 AAKLARFLKERQKKKVMTVSADVYRPAAIKQLETVSNEVGVGFIPSQASEKPIDIVNRAI 176 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 +QA+ + DVLI+DTAGRLH + +M I ++ +K P L V+DA TGQ+A Sbjct: 177 EQAKIQFADVLIVDTAGRLHVDEDMMDEIKELHAAVK------PTETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F+ TG+I+TK DG ARGG + + P+ FLG+GE ++ LEPF Sbjct: 231 NTAKAFNDALALTGVILTKTDGDARGGAALSVRAITGKPIKFLGIGEKLDALEPF 285 >gi|218768922|ref|YP_002343434.1| signal recognition particle protein [Neisseria meningitidis Z2491] gi|121052930|emb|CAM09284.1| signal recognition particle protein [Neisseria meningitidis Z2491] gi|319411220|emb|CBY91627.1| signal recognition particle protein (fifty-four homolog) [Neisseria meningitidis WUE 2594] Length = 456 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 87/286 (30%), Positives = 153/286 (53%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ + + K ++V+ Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFINNVKEKALGQEVAGSLTPDQAFIGVVNKALT 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + + P V+L+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGRENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA GQ+A+ + F+ TG+++TKMDG Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299 >gi|242399400|ref|YP_002994824.1| Signal recognition 54 kDa protein [Thermococcus sibiricus MM 739] gi|242265793|gb|ACS90475.1| Signal recognition 54 kDa protein [Thermococcus sibiricus MM 739] Length = 453 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 92/279 (32%), Positives = 142/279 (50%), Gaps = 16/279 (5%) Query: 45 VREELEDL---LIRSDIGVAV----AQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKML 96 VR+ + D+ LI SD+ V + +KI + L ++ VS + ++ V E + L Sbjct: 33 VRDVVRDIQRALITSDVNVRLVLDLTKKIEKRALEEKPPAGVSKKEHIVKIVYEELTNFL 92 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 +KP + +P V+L VG+ G GKTT + KLS+ G KV + DT+R A Sbjct: 93 GKEAKPV--EIKAKPTVLLTVGIQGSGKTTSVAKLSRYFQKHGYKVGVVCSDTWRPGAYQ 150 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QLK + + + +A LA E + + K VDV+I+D+AGR L+ + Sbjct: 151 QLKQLIEPYGIEVFGNPEEKNAIKLAKEGVEYFKKKGVDVIIVDSAGRHKEEKGLIEEMR 210 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 ++ + PH V+ ++D T GQ A Q F +I+TK+DG+A+GGG + Sbjct: 211 QISNTIN------PHEVILIIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGAL 264 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 VV P+ F+GVGE I+DLEPF K F + + G D Sbjct: 265 SAVVATGAPIKFIGVGEKIDDLEPFDPKRFVSRLLGLGD 303 >gi|325202877|gb|ADY98331.1| signal recognition particle protein [Neisseria meningitidis M01-240149] gi|325207324|gb|ADZ02776.1| signal recognition particle protein [Neisseria meningitidis NZ-05/33] Length = 456 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 87/286 (30%), Positives = 153/286 (53%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ + + K ++V+ Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFINNVKEKALGQEVAGSLTPDQAFIGVVNKALT 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + + P V+L+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGRENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA GQ+A+ + F+ TG+++TKMDG Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299 >gi|299771374|ref|YP_003733400.1| signal recognition particle protein [Acinetobacter sp. DR1] gi|298701462|gb|ADI92027.1| signal recognition particle protein [Acinetobacter sp. DR1] Length = 471 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 158/295 (53%), Gaps = 25/295 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + ++ S +L +D +++ L ++ L+ +D+ + V ++ + ++ + Sbjct: 2 FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61 Query: 77 KDVSVQ--------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTV 127 ++V Q +++YD + KM+ ++ D S +P V+ L+ G+ G GKTT Sbjct: 62 QEVMTQLSPGQAFVKIVYDE---LTKMMGEANE--TLDLSAKPPVVVLLAGLQGAGKTTT 116 Query: 128 IGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL++ + + KVM + D +R AAI QL+ + A F+ S+ + A Sbjct: 117 AAKLARFLKERQKKKVMTVSADVYRPAAIKQLETVSAEVGAGFIASDASEKPIDIVNRAI 176 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 +QA+ + DVLI+DTAGRLH + +M I ++ +K P L V+DA TGQ+A Sbjct: 177 EQAKIQFADVLIVDTAGRLHVDEDMMDEIKELHAAVK------PTETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F+ TG+I+TK DG ARGG + + P+ FLG+GE ++ LEPF Sbjct: 231 NTAKAFNDALALTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPF 285 >gi|254671537|emb|CBA09153.1| signal recognition particle protein [Neisseria meningitidis alpha153] Length = 370 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 87/286 (30%), Positives = 153/286 (53%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ + + K ++V+ Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFINNVKEKALGQEVAGSLTPDQAFIGVVNKALT 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + + P V+L+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGRENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA GQ+A+ + F+ TG+++TKMDG Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299 >gi|6900424|emb|CAB72034.1| signal recognition particle protein [Neisseria meningitidis] Length = 456 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 87/286 (30%), Positives = 153/286 (53%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ + + K ++V+ Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFINNVKEKALGQEVAGSLTPDQAFIGVVNKALT 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + + P V+L+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGRENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA GQ+A+ + F+ TG+++TKMDG Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299 >gi|291288184|ref|YP_003505000.1| signal recognition particle protein [Denitrovibrio acetiphilus DSM 12809] gi|290885344|gb|ADD69044.1| signal recognition particle protein [Denitrovibrio acetiphilus DSM 12809] Length = 450 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 79/208 (37%), Positives = 113/208 (54%), Gaps = 6/208 (2%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S+ P VI++ G+ G GKTT GKL+ V+L AGD +R AAIDQL+ + Sbjct: 100 SNPPTVIMMAGLQGSGKTTSAGKLANFFMKQSKSVLLVAGDIYRPAAIDQLETLGRQLGC 159 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 D DA +A +A A+ D+LIIDTAGRLH + LM +++R + ++ Sbjct: 160 DVYSDRESKDAVKIAKDALAHAKKTAKDILIIDTAGRLHIDENLM---NEIVRTKEAVN- 215 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P VL V DA TGQ+A+ + F+ + TG+I+TKMDG ARGG + I P+ Sbjct: 216 --PDEVLFVADAMTGQDAVNVAKSFNDMLDATGIILTKMDGDARGGAALSIKEVTGKPLK 273 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G GE + + E F ++ I G D Sbjct: 274 FIGTGEKLTEFEQFYPDRMASRILGMGD 301 >gi|146312732|ref|YP_001177806.1| signal recognition particle protein [Enterobacter sp. 638] gi|145319608|gb|ABP61755.1| signal recognition particle subunit FFH/SRP54 (srp54) [Enterobacter sp. 638] Length = 453 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 96/309 (31%), Positives = 155/309 (50%), Gaps = 25/309 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V+E L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRSLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHRPHVILVVGVNGVGKTTVIGK 130 +V+ + L E + + L + + P V+L+ G+ G GKTT +GK Sbjct: 62 HEVN--KSLTPGQEFVKIVRNELVAAMGEENQVLNLAAQPPAVVLMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + KV++ + D +R AAI QL+ A + DF S++ + A K+A Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVEVDFFPSDVAQKPVDIVNAALKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246 + K DVL++DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HAAINPVETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF Sbjct: 231 NTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRI 290 Query: 307 SAVITGCLD 315 ++ I G D Sbjct: 291 ASRILGMGD 299 >gi|83644605|ref|YP_433040.1| signal recognition particle protein [Hahella chejuensis KCTC 2396] gi|83632648|gb|ABC28615.1| signal recognition particle protein [Hahella chejuensis KCTC 2396] Length = 460 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 100/309 (32%), Positives = 159/309 (51%), Gaps = 25/309 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L + + I +L +D +++ L ++ L+ +D+ + V ++ V+ + K Sbjct: 2 FDSLTERLSDSLKKITGQAKLTEDNIKDTLREVRMALLEADVALPVVKEFVDSVKAKAVG 61 Query: 77 KDVSVQRVLYDVSELI---HKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGK 130 ++V R L E I L+ + N D + P VIL+ G+ G GKTT +GK Sbjct: 62 QEV--MRSLTPGQEFIRVVQNELIAVMGRANEDLNLNCQPPAVILMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL+ A +F S D +A A +A Sbjct: 120 LARFLKERRKKSVMVVSADVYRPAAIKQLETLAGDVGVNFFPSTADQDPVDIASAAIAEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246 + + DV+I+DTAGRLH ++ +M I KRL HA P L V+DA TGQ+A Sbjct: 180 RLRFNDVVIVDTAGRLHIDADMMTEI-------KRL--HAAVSPIETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TG+I+TK DG ARGG + + P+ F+G+GE + LEPF Sbjct: 231 NTAKAFNDALPLTGVILTKADGDARGGAALSVRSITGKPIKFMGMGEKVEALEPFHPDRV 290 Query: 307 SAVITGCLD 315 ++ I G D Sbjct: 291 ASRILGMGD 299 >gi|88860520|ref|ZP_01135158.1| 4.5S-RNP protein, GTP-binding export factor [Pseudoalteromonas tunicata D2] gi|88817718|gb|EAR27535.1| 4.5S-RNP protein, GTP-binding export factor [Pseudoalteromonas tunicata D2] Length = 457 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 97/307 (31%), Positives = 158/307 (51%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + +L + + +I RL +D +++ L ++ L+ +D+ + V + V+ + K A Sbjct: 2 FENLQERLGKTLKNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFVK--VVKERA 59 Query: 77 KDVSVQRVLYD-------VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L V + + K + ++ N + + P VI++ G+ G GKTT + Sbjct: 60 VGVEVTKSLSPGQVFVKIVRQELEKAMGEANEELNLN-AQPPAVIMMAGLQGAGKTTSVA 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+K +++ K V++ + D +R AAI QL+ A +F S+I +A A Sbjct: 119 KLAKFLTERKKKSVLVVSADVYRPAAIKQLETLATEVKVEFFPSDISQKPIDIANNAISH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K +DV+I+DTAGRLH +S +M I + +K P L V+DA TGQ+A Sbjct: 179 AKRKFIDVVIVDTAGRLHVDSNMMDEIKALHSAVK------PIETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+I+TK DG ARGG + I P+ F+GVGE + LEPF ++ Sbjct: 233 AKAFDEALPLTGVILTKTDGDARGGAALSIRHITGKPIKFMGVGERTDALEPFHPDRIAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|255023711|ref|ZP_05295697.1| SRP receptor alpha-subunit [Listeria monocytogenes FSL J1-208] Length = 145 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 67/132 (50%), Positives = 91/132 (68%) Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 GSD AA+ ++A + A+A+K DVL+ DTAGRL N LM + K+ RV+ R P+APH VL Sbjct: 1 GSDPAAVMFDAVQAAKARKADVLLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVL 60 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VLDATTGQNA Q + F TG+I+TK+DGTA+GG +I I IPV F+G+GE Sbjct: 61 LVLDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIPVKFVGLGEQ 120 Query: 295 INDLEPFVAKDF 306 ++DL+ F A ++ Sbjct: 121 MDDLQAFDANEY 132 >gi|325205379|gb|ADZ00832.1| signal recognition particle protein [Neisseria meningitidis M04-240196] Length = 456 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 152/286 (53%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + K ++V Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVVGSLTPDQAFIGVVNKALT 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + + P V+L+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGRENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA GQ+A+ + F+ TG+++TKMDG Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299 >gi|315144939|gb|EFT88955.1| signal recognition particle protein [Enterococcus faecalis TX2141] gi|315162383|gb|EFU06400.1| signal recognition particle protein [Enterococcus faecalis TX0645] Length = 472 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 98/308 (31%), Positives = 161/308 (52%), Gaps = 21/308 (6%) Query: 20 GFASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75 F S + +L++ ++ I ++ + V+E + ++ L+ +D+ + V + + + + Sbjct: 2 AFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERAV 61 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +V Q+++ V E + K L + N S P VI++ G+ G GKTT GK Sbjct: 62 GVEVLESLSPAQQIVKIVDEELTKTLGSETVELNKS-SKIPTVIMMTGLQGAGKTTFTGK 120 Query: 131 LSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFK 187 L+K M + +L AGD +R AAIDQLK+ + + ++G+DA + + Sbjct: 121 LAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQL--EVPVFDMGTDANPVEIVRQGLA 178 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ KK D ++IDTAGRLH + LM + K I+ L P+ +L V+DA TGQ+A+ Sbjct: 179 LAKEKKNDYVLIDTAGRLHIDEALMDEL-KQIKELAN-----PNEILLVVDAMTGQDAVN 232 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ G TG+++TKMDG RGG + I P+ F+G GE + DLE F S Sbjct: 233 VADSFNEQLGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRMS 292 Query: 308 AVITGCLD 315 + I G D Sbjct: 293 SRILGMGD 300 >gi|150399615|ref|YP_001323382.1| signal recognition particle protein Srp54 [Methanococcus vannielii SB] gi|166222337|sp|A6UQJ8|SRP54_METVS RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|150012318|gb|ABR54770.1| GTP-binding signal recognition particle SRP54 G- domain protein [Methanococcus vannielii SB] Length = 450 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 93/288 (32%), Positives = 152/288 (52%), Gaps = 24/288 (8%) Query: 39 RRLDDGVREELEDLLIRSDIGV--------AVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90 ++L V ++++ LI+SD+ V + +K +EE K ++K + +++YD E Sbjct: 24 KKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGFSKKEHIIKIVYD--E 81 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 L+ K+L + D S + VIL+VG+ G GKTT KL++ + G+K L A D + Sbjct: 82 LV-KLLGENPQKLELDPSKK-SVILLVGIQGSGKTTSSAKLARYIQKKGMKPALIAADIY 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNN 208 R AA QLK +++ + E + E K+ + KK DVLIIDTAGR Sbjct: 140 RPAAYQQLKQLSEKINVPLFGDETKTKTPV---EIVKEGIEKLKKSDVLIIDTAGRHKEE 196 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTTGLIMTKMD 267 L+ + +M + P+ ++ V+D T GQ A Q + F AV+ +++TK+D Sbjct: 197 ESLLEEMKQMKEITN------PNEIILVIDGTLGQQAKNQAKAFKDAVSEIGSILVTKLD 250 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G+A+GGG + V P+ F+G GEG+++LE F K F + + G D Sbjct: 251 GSAKGGGALSAVAEINAPIKFIGTGEGVDNLETFDPKKFISRLLGMGD 298 >gi|308274695|emb|CBX31294.1| Signal recognition particle protein [uncultured Desulfobacterium sp.] Length = 449 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 90/284 (31%), Positives = 147/284 (51%), Gaps = 11/284 (3%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHK 94 ++ + +++G++E + L+ +D+ V +K+V ++ + ++V + V ++++ Sbjct: 28 LTEKNIEEGLKE-VRMALLEADVHYKVVKKLVADIKERSLGQEVMASLTPGHQVIKIVND 86 Query: 95 MLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 L L + + P I++VG+ G GKTT GK++ + G K L D +R Sbjct: 87 ELTRLMGSSHQEIVLSGSVPVSIMLVGLQGSGKTTTAGKIAIFLRQKGRKPFLVPADVYR 146 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 AAIDQL+ A++ S + D + +A AQ D LI+DTAGRLH N L Sbjct: 147 PAAIDQLRKIAEQIGVPAFESSVDMDPVDICLKAKTTAQKLGCDTLILDTAGRLHINEEL 206 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 MA + ++ +K P +L V DA TGQ+A+ + F + G+I+TKMDG AR Sbjct: 207 MAELSRIKNAVK------PSDILLVADAMTGQDAVNISKSFDSSLDIGGVILTKMDGDAR 260 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 GG + I P+ F+GVGE ++ LEPF S+ I G D Sbjct: 261 GGAALSIKAITNKPIKFIGVGEKLSALEPFYPDRMSSRILGMGD 304 >gi|12230630|sp|O59307|SRP54_PYRHO RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 Length = 443 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 93/282 (32%), Positives = 141/282 (50%), Gaps = 22/282 (7%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEEL----LTKRYAKDVSV-QRVLYDVSELIHKML 96 V+E + D+ L+++D+ V + K+ +E+ L ++ +S + ++ V E + K L Sbjct: 28 VKEVVRDIQRALLQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEELTKFL 87 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 +KP + +P V+L VGV G GKTT + KL++ G KV + DT+R A Sbjct: 88 GTEAKPI--EIKEKPTVLLTVGVQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYH 145 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL---MA 213 QLK D + DA LA E + + + VD++I+DTAGR L M Sbjct: 146 QLKQLLDPYHIEVFGDPNEKDAVKLAKEGVEYFKTRDVDLIIVDTAGRHKEEKDLIEEMR 205 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 I + IR PH V+ V+D T GQ A Q F +I+TK+D +A+GG Sbjct: 206 MISEEIR---------PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGG 256 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + V P+ F+GVGE I+DLEPF F + + G D Sbjct: 257 GALSAVAATGAPIKFIGVGEKIDDLEPFDPARFVSRLLGLGD 298 >gi|324005826|gb|EGB75045.1| signal recognition particle protein [Escherichia coli MS 57-2] Length = 453 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 95/308 (30%), Positives = 158/308 (51%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V++ L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V + + ++ N + P V+L+ G+ G GKTT +GKL Sbjct: 62 HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A+ Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K DVL++DTAGRLH + +M I ++ HA P L V+D+ TGQ+A Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDSMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF + Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|169824222|ref|YP_001691833.1| signal recognition particle [Finegoldia magna ATCC 29328] gi|302380887|ref|ZP_07269349.1| signal recognition particle protein [Finegoldia magna ACS-171-V-Col3] gi|303234951|ref|ZP_07321576.1| signal recognition particle protein [Finegoldia magna BVS033A4] gi|167831027|dbj|BAG07943.1| signal recognition particle [Finegoldia magna ATCC 29328] gi|302311265|gb|EFK93284.1| signal recognition particle protein [Finegoldia magna ACS-171-V-Col3] gi|302494069|gb|EFL53850.1| signal recognition particle protein [Finegoldia magna BVS033A4] Length = 446 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 97/307 (31%), Positives = 161/307 (52%), Gaps = 23/307 (7%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F + S KL+ ++ + + +L D E++ L+ +D+ V + + ++ K A Sbjct: 3 FENLSDKLQNALSKLTNRGKLTEKDIDVAMREVKLALLEADVNYKVVKDFISQV--KERA 60 Query: 77 KDVSV-------QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 D SV Q+V+ V+E + KM+ + N +P VI++ G+ G GKTT G Sbjct: 61 IDSSVLESLTPGQQVIKIVNEELTKMMGEKEEKLNVS-PMKPTVIMLCGLQGAGKTTHAG 119 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQ 188 KL+ + + V+L A D +R AAI QL++ + + E+G + ++ +A ++ Sbjct: 120 KLALNLKNKNKSVLLVACDIYRPAAIKQLQVVGGKVGVEVF--EMGQINPVEISKKAIEE 177 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K +D +IIDTAGRLH + LM + + + + P +L V+DA TGQ+A+ Sbjct: 178 AKRKNIDYVIIDTAGRLHIDDTLMDELKNIKQEVN------PSDILLVVDAMTGQDAVNV 231 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 F+ TG+I+TK+DG ARGG + I P+ F+GVGE + DLEPF ++ Sbjct: 232 AAKFNEDLDITGIILTKLDGDARGGAALSIRQVADKPIKFIGVGEKLGDLEPFHPDRMAS 291 Query: 309 VITGCLD 315 I G D Sbjct: 292 RILGMGD 298 >gi|262280102|ref|ZP_06057887.1| signal recognition particle GTPase [Acinetobacter calcoaceticus RUH2202] gi|262260453|gb|EEY79186.1| signal recognition particle GTPase [Acinetobacter calcoaceticus RUH2202] Length = 471 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 159/295 (53%), Gaps = 25/295 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + ++ S +L +D +++ L ++ L+ +D+ + V ++ + ++ + Sbjct: 2 FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61 Query: 77 KDVSVQ--------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTV 127 ++V Q +++YD + KM+ ++ D S +P V+ L+ G+ G GKTT Sbjct: 62 QEVMTQLSPGQAFVKIVYDE---LTKMMGEANE--TLDLSAKPPVVVLLAGLQGAGKTTT 116 Query: 128 IGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL++ + + KVM + D +R AAI QL+ + A F+ S+ + A Sbjct: 117 AAKLARFLKERQKKKVMTVSADVYRPAAIKQLETVSAEVGAGFIPSDASEKPIDIVNRAI 176 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 +QA+ + DVLI+DTAGRLH ++ +M I ++ +K P L V+DA TGQ+A Sbjct: 177 EQAKIQFADVLIVDTAGRLHVDADMMDEIKELHAAVK------PTETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F+ TG+I+TK DG ARGG + + P+ FLG+GE ++ LEPF Sbjct: 231 NTAKAFNDALALTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPF 285 >gi|14591457|ref|NP_143537.1| signal recognition particle protein Srp54 [Pyrococcus horikoshii OT3] gi|3258124|dbj|BAA30807.1| 445aa long hypothetical signal recognition particle protein [Pyrococcus horikoshii OT3] Length = 445 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 93/282 (32%), Positives = 141/282 (50%), Gaps = 22/282 (7%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEEL----LTKRYAKDVSV-QRVLYDVSELIHKML 96 V+E + D+ L+++D+ V + K+ +E+ L ++ +S + ++ V E + K L Sbjct: 30 VKEVVRDIQRALLQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEELTKFL 89 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 +KP + +P V+L VGV G GKTT + KL++ G KV + DT+R A Sbjct: 90 GTEAKPI--EIKEKPTVLLTVGVQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYH 147 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL---MA 213 QLK D + DA LA E + + + VD++I+DTAGR L M Sbjct: 148 QLKQLLDPYHIEVFGDPNEKDAVKLAKEGVEYFKTRDVDLIIVDTAGRHKEEKDLIEEMR 207 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 I + IR PH V+ V+D T GQ A Q F +I+TK+D +A+GG Sbjct: 208 MISEEIR---------PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGG 258 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + V P+ F+GVGE I+DLEPF F + + G D Sbjct: 259 GALSAVAATGAPIKFIGVGEKIDDLEPFDPARFVSRLLGLGD 300 >gi|78779766|ref|YP_397878.1| signal recognition particle protein [Prochlorococcus marinus str. MIT 9312] gi|78713265|gb|ABB50442.1| signal recognition particle subunit FFH/SRP54 (srp54) [Prochlorococcus marinus str. MIT 9312] Length = 489 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 150/286 (52%), Gaps = 14/286 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 IS ++D ++E ++ L+ +D+ ++V ++ + ++ K ++V Q+ + V++ Sbjct: 22 ISENNINDALKE-VKRALLDADVSLSVVKEFISDVKDKAIGEEVVRGVNPGQKFIEVVNK 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + ++ + P N + S P VIL+ G+ G GKTT GKL + + KV+L A D + Sbjct: 81 ELINIMGNENSPLNENQSS-PTVILMAGLQGAGKTTATGKLGLYLKEKDKKVLLVAADIY 139 Query: 151 RSAAIDQLKIWADRTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 R AA++QLK + + F E S + +A A + +IIDTAGRL + Sbjct: 140 RPAAVEQLKTLGSQYDLEVFSAKEKNSKPEEITKDALNYANENNFNSIIIDTAGRLQIDD 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 +M+ +M+R+ + P VL V+D+ GQ A + FH G +G I+TK+DG Sbjct: 200 SMMS---EMVRIK---EVSNPDEVLLVVDSMIGQEAADLTKSFHEKVGISGAILTKLDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + I P+ F+GVGE I L+PF + ++ I G D Sbjct: 254 SRGGAALSIRKISGKPIKFIGVGEKIEALQPFHPERMASRILGMGD 299 >gi|43142|emb|CAA25957.1| unnamed protein product [Escherichia coli] Length = 368 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/212 (37%), Positives = 117/212 (55%), Gaps = 13/212 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT +GKL K + + KV++ + D +R AAI QL+ A++ Sbjct: 12 AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG 71 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S++G + A K+A+ K DVL++DTAGRLH + +M I ++ Sbjct: 72 VDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQV-------- 123 Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 HA P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I Sbjct: 124 -HASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 182 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ FLGVGE LEPF ++ I G D Sbjct: 183 KPIKFLGVGEKTEALEPFHPDRIASRILGMGD 214 >gi|188534781|ref|YP_001908578.1| signal recognition particle protein [Erwinia tasmaniensis Et1/99] gi|188029823|emb|CAO97704.1| Signal recognition particle protein (Fifty-four homolog) [Erwinia tasmaniensis Et1/99] Length = 453 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 116/212 (54%), Gaps = 13/212 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P VIL+ G+ G GKTT +GKL K + + KV++ + D +R AAI QL+ A++ Sbjct: 97 AQPPAVILMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S++ + A +QA+ K DVL++DTAGRLH + +M I ++ Sbjct: 157 VDFCPSDLSQQPVDIVKNALQQARLKFYDVLLVDTAGRLHVDEAMMDEIKQV-------- 208 Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 HA P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+GVGE LEPF ++ I G D Sbjct: 268 KPIKFMGVGEKTEALEPFYPDRIASRILGMGD 299 >gi|78186827|ref|YP_374870.1| Signal recognition particle protein [Chlorobium luteolum DSM 273] gi|78166729|gb|ABB23827.1| signal recognition particle subunit FFH/SRP54 (srp54) [Chlorobium luteolum DSM 273] Length = 449 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 85/268 (31%), Positives = 139/268 (51%), Gaps = 12/268 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V +K+VE++ K +DV Q ++ VS+ + +++ KP N Sbjct: 38 LLGADVNYKVVKKLVEDIRLKSLGEDVVKSVSPAQMIVKIVSDELTELMGGEQKPLNLST 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 + P V++V G+ G GKTT KL+K++ G M+ A D +R AA++QLK Sbjct: 98 KNLPAVVMVAGLQGSGKTTFCAKLAKRLKKGGKNPMMVAADVYRPAAVEQLKTLGLEVGV 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V S DA +A E + A+ DVLI+DTAGRL + +MA + ++K Sbjct: 158 P-VFSLDEQDAMKVAREGLEAARRGAHDVLILDTAGRLQIDDRMMAEAEALKNLMK---- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ GQ A+ + F+ G+++TK+DG +RGG + I + P+ Sbjct: 213 --PEELLFVVDSMMGQEAVNTAKAFNDRLDFDGVVLTKLDGDSRGGAALSIRQVVEKPIK 270 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ VGE ++DL+ F + I G D Sbjct: 271 FMSVGEKMDDLDQFYPDRMAQRILGMGD 298 >gi|148242807|ref|YP_001227964.1| Signal recognition particle protein [Synechococcus sp. RCC307] gi|147851117|emb|CAK28611.1| Signal recognition particle protein [Synechococcus sp. RCC307] Length = 493 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 88/270 (32%), Positives = 140/270 (51%), Gaps = 16/270 (5%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPLSKPFNWDFS-- 108 L+ +D+ + V + + E+ K DV V+ V D +L+H+ L+ + N + Sbjct: 42 LLDADVSLPVVKSFIAEVREKALGADV-VRGVSPDQQFIKLVHEELVEVMGGANAPLAKA 100 Query: 109 -HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 P V+L+ G+ G GKTT KL + + G + +L A DT+R AAIDQL+ + Sbjct: 101 EQSPTVVLMAGLQGAGKTTATAKLGLHLKEQGRRALLVAADTYRPAAIDQLQTLGQQI-- 158 Query: 168 DFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 D +G+DA A+A + + + D +I+DTAGRL ++ +M +M+R+ + Sbjct: 159 DVEVFSLGADAKPEAIAEAGLAKGREEGFDTVIVDTAGRLQIDTSMME---EMVRIRSAV 215 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 AP VL V+D+ GQ A FH G TG ++TKMDG +RGG + I P Sbjct: 216 ---APDEVLLVVDSMIGQEAADLTRSFHEQVGITGAVLTKMDGDSRGGAALSIRKVSGAP 272 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F+G GE + L+PF + ++ I G D Sbjct: 273 IKFIGTGEKVEALQPFHPERMASRILGMGD 302 >gi|15676217|ref|NP_273349.1| signal recognition particle protein [Neisseria meningitidis MC58] gi|304389131|ref|ZP_07371173.1| signal recognition particle protein [Neisseria meningitidis ATCC 13091] gi|7225519|gb|AAF40746.1| signal recognition particle protein [Neisseria meningitidis MC58] gi|304336930|gb|EFM03122.1| signal recognition particle protein [Neisseria meningitidis ATCC 13091] gi|316985236|gb|EFV64188.1| signal recognition particle protein [Neisseria meningitidis H44/76] gi|325135098|gb|EGC57726.1| signal recognition particle protein [Neisseria meningitidis M13399] gi|325141130|gb|EGC63633.1| signal recognition particle protein [Neisseria meningitidis CU385] gi|325199497|gb|ADY94952.1| signal recognition particle protein [Neisseria meningitidis H44/76] Length = 456 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 87/286 (30%), Positives = 152/286 (53%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ + + K ++V+ Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFINNVKEKALGQEVAGSLTPDQAFIGVVNKALT 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + + P V+L+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGRENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA GQ+A+ + F+ TG+++TKMDG Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GVGE IN LEPF + I G D Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLAGRILGMGD 299 >gi|327441079|dbj|BAK17444.1| signal recognition particle GTPase [Solibacillus silvestris StLB046] Length = 452 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/213 (38%), Positives = 125/213 (58%), Gaps = 12/213 (5%) Query: 107 FSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADR 164 FS+RP VI++VG+ G GKTT GKL+ + K +L A D +R AA++QL+ + Sbjct: 96 FSNRPPTVIMMVGLQGAGKTTTTGKLANVLRKKYNKKPLLVAADIYRPAAVEQLQTLGKQ 155 Query: 165 TSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 S +G+D + +A +A + A+ + +DV++IDTAGRLH + LM + K IR L Sbjct: 156 LSLPVFS--LGTDVSPVEIARQAIEHAKEEHLDVVLIDTAGRLHIDEELMQEL-KDIRGL 212 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 K P V V+DA TGQ+A+ + F+ G TG+++TK+DG RGG + I Sbjct: 213 KE-----PDEVFLVVDAMTGQDAVNVAQSFNETVGITGVVLTKLDGDTRGGAALSIRSVT 267 Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + P+ F+G+GE ++ LEPF + ++ I G D Sbjct: 268 EKPIKFVGMGEKMDALEPFHPERMASRILGMGD 300 >gi|292487301|ref|YP_003530173.1| signal recognition 54 kDa protein (SRP54) [Erwinia amylovora CFBP1430] gi|291552720|emb|CBA19765.1| Signal recognition 54 kDa protein (SRP54) [Erwinia amylovora CFBP1430] gi|312171409|emb|CBX79668.1| Signal recognition 54 kDa protein (SRP54) [Erwinia amylovora ATCC BAA-2158] Length = 481 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 98/324 (30%), Positives = 167/324 (51%), Gaps = 26/324 (8%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVA 61 VA+ + ++ + T F + + +L + + +I RL +D +++ L ++ L+ +D+ + Sbjct: 16 VATAASHYVERETM-FDNLTDRLSQTLRNISGRGRLTEDNIKDTLREVRMALLEADVALP 74 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELI----HKMLMPLSKPFNWD--FSHRPHVIL 115 V + + + K A V + L E + ++++ + + N + P VIL Sbjct: 75 VVRDFIGRV--KERAVGQEVNKSLTPGQEFVKIVKNELVAAMGEENNTLNLAAQPPAVIL 132 Query: 116 VVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 + G+ G GKTT +GKL K + + KV++ + D +R AAI QL+ A++ DF S++ Sbjct: 133 MAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFCPSDL 192 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PH 231 + A +QA+ K DVL++DTAGRLH + +M I ++ HA P Sbjct: 193 TQQPVDIVKNALQQAKLKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HAAINPV 243 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I P+ F+GV Sbjct: 244 ETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFMGV 303 Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315 GE LEPF ++ I G D Sbjct: 304 GEKTEALEPFYPDRIASRILGMGD 327 >gi|218701122|ref|YP_002408751.1| signal recognition particle protein [Escherichia coli IAI39] gi|218371108|emb|CAR18936.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Escherichia coli IAI39] Length = 453 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 157/308 (50%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V++ L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V + + ++ N + P V+L+ G+ G GKTT +GKL Sbjct: 62 HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + KV++ + D +R AAI QL A++ DF S++G + A K+A+ Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLVTLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K DVL++DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF + Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|149280108|ref|ZP_01886232.1| signal recognition particle protein [Pedobacter sp. BAL39] gi|149229122|gb|EDM34517.1| signal recognition particle protein [Pedobacter sp. BAL39] Length = 446 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/210 (34%), Positives = 113/210 (53%), Gaps = 6/210 (2%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 D + P +IL+ G+NG GKTT GKL+ + G K +L AGD +R AA+DQL+I ++ Sbjct: 94 DLKNNPTIILIAGLNGAGKTTFTGKLANYLKSKGKKPLLVAGDVYRPAAVDQLQILGEQI 153 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + D +A E + + + +V+IIDTAGRL + +M I + K Sbjct: 154 GVPVYANIESKDPVGIALEGIAEGKKQHNNVIIIDTAGRLAIDEQMMDEIAAVKENTK-- 211 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 PH +L V+DA TGQ+A+ + F+ TG+++TK+DG RGG + I P Sbjct: 212 ----PHEILFVVDAMTGQDAVNTAKAFNDRLDFTGVVLTKLDGDTRGGAALSIKSVVNKP 267 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F+G GE + L+ F + ++ I G D Sbjct: 268 IKFIGTGEKMEALDVFYPERMASRILGMGD 297 >gi|258571053|ref|XP_002544330.1| signal recognition particle 54 kDa protein [Uncinocarpus reesii 1704] gi|237904600|gb|EEP79001.1| signal recognition particle 54 kDa protein [Uncinocarpus reesii 1704] Length = 539 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 93/301 (30%), Positives = 151/301 (50%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ ++D+ S LD D + +E+ L+ +D+ V + Q++ + + + Sbjct: 9 RINAAVSDLTRSSNLDEKAFDSMLKEICAALLSADVNVRLVQELRKSIKSSVNFSSIPPA 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D +L+ ++ P ++PF R +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--QLV-TLVDPKTEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G K L DTFR+ A DQLK A + + S +D A +A E + + +K Sbjct: 125 YQTRGFKSALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAIVAAEGVAKFKKEKF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 +++I+DT+GR + L +MI++ + P + VLD+T GQ A Q F + Sbjct: 185 ELIIVDTSGRHKQEADLFT---EMIQIQNAVK---PDQTIMVLDSTIGQAAEAQSAAFKS 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V K P+ FLG GE + DLE F K F + G Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATKTPIIFLGTGEHMLDLERFAPKPFIQKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|147678059|ref|YP_001212274.1| signal recognition particle GTPase [Pelotomaculum thermopropionicum SI] gi|146274156|dbj|BAF59905.1| signal recognition particle GTPase [Pelotomaculum thermopropionicum SI] Length = 450 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 93/303 (30%), Positives = 148/303 (48%), Gaps = 14/303 (4%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 FA S +L+E + RL + V E L ++ L+ +D+ V + + + K Sbjct: 3 FAGLSERLQETFRKLRGKGRLTEADVNEALREVRMALLEADVNFKVVKDFIARIKEKAVG 62 Query: 77 KD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH---VILVVGVNGVGKTTVIGKLS 132 ++ + V +++H L+ L N + P VI++VG+NG GKTT KL+ Sbjct: 63 QELIESLNPAQHVVKVVHGELVALMGGSNSKINMAPKPPTVIMMVGLNGAGKTTTSAKLA 122 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 + G + +L A D +R AA+ QL++ ++ G + ++ A + A Sbjct: 123 NYLRKQGRRPLLVAADVYRPAAVKQLQVLGEQLGIPVFADGTGKEPVSIGLAAAESAVTG 182 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 DV+IIDTAGR N LMA + M ++ PH VL V+DA TGQ A+ E F Sbjct: 183 GRDVVIIDTAGRQEVNEELMAELEAMKEAIR------PHEVLLVVDAMTGQAAVGVAETF 236 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 ++ G G+I+TK+DG RGG + + P+ F G+GE ++ LEPF + I G Sbjct: 237 NSRLGLDGVILTKLDGDTRGGAALSVRAVTGKPIKFAGLGEKLDALEPFHPDRMAERILG 296 Query: 313 CLD 315 D Sbjct: 297 MGD 299 >gi|332535262|ref|ZP_08411064.1| signal recognition particle, subunit Ffh SRP54 [Pseudoalteromonas haloplanktis ANT/505] gi|332035293|gb|EGI71797.1| signal recognition particle, subunit Ffh SRP54 [Pseudoalteromonas haloplanktis ANT/505] Length = 459 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 95/307 (30%), Positives = 158/307 (51%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + +L + + +I RL +D +++ L ++ + +D+ + V ++ V+++ K A Sbjct: 2 FENLQERLGKTLKNISGRGRLTEDNIKDTLREVRMAFLEADVALPVVREFVKQV--KERA 59 Query: 77 KDVSVQRVLYD-------VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L V E + K + ++ + + + P V++V G+ G GKTT + Sbjct: 60 VGVEVTKSLSPGQVFIKIVREELEKAMGEANEELSLN-AQPPAVVMVAGLQGAGKTTSVA 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+K + + K V++ + D +R AAI QL+ A DF S+I +A A Sbjct: 119 KLAKFLKERKKKSVLVVSADVYRPAAIKQLETLATEVDVDFFPSDISQKPVDIANAAISH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K +DV+++DTAGRLH +S +M I + + + P L V+DA TGQ+A Sbjct: 179 AKKKFIDVVLVDTAGRLHVDSNMMDEIKDLHKAIN------PIETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+I+TK DG ARGG + I P+ F+GVGE + LEPF ++ Sbjct: 233 AKAFDEALPLTGVILTKTDGDARGGAALSIRHITGKPIKFMGVGERTDALEPFHPDRIAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|146328752|ref|YP_001209342.1| signal recognition particle protein [Dichelobacter nodosus VCS1703A] gi|146232222|gb|ABQ13200.1| signal recognition particle protein [Dichelobacter nodosus VCS1703A] Length = 452 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 92/285 (32%), Positives = 147/285 (51%), Gaps = 13/285 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSE 90 IS +++ +RE + LI +D+ + V +++ E + ++V Q L V Sbjct: 22 ISEENIENALRE-VRMALIEADVALPVVKEVTETIKEAAIGQEVGQKLSPDQAFLKIVQA 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + +++ + N + P VIL+ G+ G GKTT KL++++ + KV L + D + Sbjct: 81 ELTRIMGEQNDALNL-ATQPPAVILLAGLQGSGKTTSAAKLARRLMNEKKKVALVSVDIY 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAI QL+ A++ +A F+ S +A A AQ + DVLI+DTAGR+H + Sbjct: 140 RPAAIKQLQTLAEQINATFILSHEQEAPQDIANRALDFAQKQFFDVLIVDTAGRMHVDEQ 199 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM I + + L+ P L V+DA TGQ+A + FH TG+I++K+DG A Sbjct: 200 LMNEIKLLHQCLQ------PIETLFVVDAMTGQDAANTAKAFHDALPLTGIILSKVDGDA 253 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I P+ FLG+GE + LE F ++ I G D Sbjct: 254 RGGAALSIRHITGKPIKFLGIGEKTDALEAFHPDRIASRILGMGD 298 >gi|318042117|ref|ZP_07974073.1| signal recognition particle protein [Synechococcus sp. CB0101] Length = 487 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 87/282 (30%), Positives = 145/282 (51%), Gaps = 18/282 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPLS 100 DG +E+ L+ +D+ + V + V+E+ K +V V+ + D +++H+ L+ Sbjct: 28 DGALKEVRRALLEADVSLPVVKDFVDEVRKKALGAEV-VRGISPDQKFIQVVHEQLVDTM 86 Query: 101 KPFNWDFSH-----RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 N + P V+L+ G+ G GKTT KL + + G K +L D +R AAI Sbjct: 87 GGENAPLAAGGKPGEPSVVLMAGLQGAGKTTATAKLGLHLKEQGRKALLVGADVYRPAAI 146 Query: 156 DQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 DQLK + + +G+DA A+A ++A+A+ D +++DTAGRL + +M Sbjct: 147 DQLKTLGGQIGVEVFS--LGTDAKPEAIAAAGIEKAKAEGFDTVLVDTAGRLQIDESMME 204 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 +M+R+ + +P VL V+D+ GQ A FH G TG ++TK+DG +RGG Sbjct: 205 ---EMVRI---REACSPDEVLLVVDSMIGQEAAELTRAFHDQVGITGAVLTKLDGDSRGG 258 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+G GE + L+PF + ++ I G D Sbjct: 259 AALSIRKVSGAPIKFIGTGEKVEALQPFHPERMASRILGMGD 300 >gi|296120454|ref|YP_003628232.1| signal recognition particle protein [Planctomyces limnophilus DSM 3776] gi|296012794|gb|ADG66033.1| signal recognition particle protein [Planctomyces limnophilus DSM 3776] Length = 491 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 93/304 (30%), Positives = 151/304 (49%), Gaps = 16/304 (5%) Query: 21 FASTSLKLKEGITDIISSRRLDD-GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S + L+ +T I S +L + +RE L+ + L+ +D+ VA + +E++ + Sbjct: 2 FESITQGLQGALTGIFRSGKLTEANIREGLKQVRQALLEADVEYNVATQFIEKVTAEAVG 61 Query: 77 KDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLS 132 + V R + ++H+ L+ L P + R + I++ G+ G GKTT GKL+ Sbjct: 62 EKVLKSLRPDEQLIGIVHQQLIALMGPTDHSLHLRRDGINKIMMCGLQGAGKTTTCGKLA 121 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 +K+ G K ++ A D R AAI+QLK + G + A+ A+ Sbjct: 122 RKLKAEGWKPLMVAADMQRPAAIEQLKTLGQQLDVPVYAEAPGGNPVAVCKNGLAHAKTA 181 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH-APHSVLQVLDATTGQNALRQVEM 251 +V+I DTAGRLH + LM L+++D P V V DA TGQ+A+R + Sbjct: 182 GANVVIFDTAGRLHVDDRLMF-------ELEQIDSRVQPDQVYLVCDAMTGQDAVRSAKA 234 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G+I+TK+DG RGG I + +P+ F+G+GE ++ LEPF + I Sbjct: 235 FNDALELDGVILTKLDGDTRGGAAISVKQVTGVPIKFVGMGEQLDRLEPFHPDRMAGRIL 294 Query: 312 GCLD 315 G D Sbjct: 295 GMGD 298 >gi|226953505|ref|ZP_03823969.1| GTP-binding signal recognition particle protein [Acinetobacter sp. ATCC 27244] gi|294649506|ref|ZP_06726927.1| signal recognition particle protein [Acinetobacter haemolyticus ATCC 19194] gi|226835746|gb|EEH68129.1| GTP-binding signal recognition particle protein [Acinetobacter sp. ATCC 27244] gi|292824567|gb|EFF83349.1| signal recognition particle protein [Acinetobacter haemolyticus ATCC 19194] Length = 469 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 88/295 (29%), Positives = 158/295 (53%), Gaps = 25/295 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + ++ S +L +D +++ L ++ L+ +D+ + V ++ + ++ + Sbjct: 2 FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61 Query: 77 KDVSVQ--------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTV 127 ++V Q +++YD + KM+ ++ D S +P V+ L+ G+ G GKTT Sbjct: 62 QEVMTQLSPGQAFVKIVYDE---LTKMMGEANE--TLDLSAKPPVVVLLAGLQGAGKTTT 116 Query: 128 IGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL++ + + KVM + D +R AAI QL+ ++ F+ S+ + A Sbjct: 117 AAKLARFLKERQKKKVMTVSADVYRPAAIKQLETVSNEVGVGFIPSQASERPIDIVNRAI 176 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 +QA+ + DVLI+DTAGRLH + +M I ++ +K P L V+DA TGQ+A Sbjct: 177 EQAKIQFADVLIVDTAGRLHVDDDMMDEIKELHAAVK------PTETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F+ TG+I+TK DG ARGG + + P+ FLG+GE ++ LEPF Sbjct: 231 NTAKAFNDALALTGVILTKTDGDARGGAALSVRAITGKPIKFLGIGEKLDALEPF 285 >gi|5912336|emb|CAB56066.1| cell division protein [Rickettsia felis] Length = 136 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 65/136 (47%), Positives = 94/136 (69%), Gaps = 2/136 (1%) Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237 A++AY A +++ + +D+L IDTAGRLHN LM + K+++V+K+LD +AP HSVL V+ Sbjct: 2 ASVAYRAMEESIKQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVL-VI 60 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA TGQN QVE F+ TGLI+TK+DG+A+ G L+ +V +PVYF+G+GE I D Sbjct: 61 DAITGQNTYNQVEHFNDATNLTGLIVTKLDGSAKAGVLVGVVQKFNLPVYFIGIGEKIED 120 Query: 298 LEPFVAKDFSAVITGC 313 L+ F DF+ + G Sbjct: 121 LKIFNRHDFAKSLVGL 136 >gi|300819917|ref|ZP_07100100.1| signal recognition particle protein [Escherichia coli MS 107-1] gi|300527505|gb|EFK48567.1| signal recognition particle protein [Escherichia coli MS 107-1] Length = 453 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 157/308 (50%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V++ L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V + + ++ N + P V+L+ G+ G GKTT +GKL Sbjct: 62 HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A+ Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K DVL+ DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 181 LKFYDVLLADTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF + Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|87301099|ref|ZP_01083940.1| signal recognition particle protein (SRP54) [Synechococcus sp. WH 5701] gi|87284067|gb|EAQ76020.1| signal recognition particle protein (SRP54) [Synechococcus sp. WH 5701] Length = 492 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 85/280 (30%), Positives = 146/280 (52%), Gaps = 16/280 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPLS 100 +G +++ L+ +D+ + V + +EE+ T+ +V V+ V D +L+H+ L+ + Sbjct: 28 EGALKQVRRALLEADVSLEVVKGFIEEVRTQAVGAEV-VRGVSPDQQFIQLVHQALVEVM 86 Query: 101 KPFNWDFS---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 N + P VIL+ G+ G GKTT KL + + G + ++ A D +R AAIDQ Sbjct: 87 GGENAPLAVADQAPTVILMAGLQGAGKTTATAKLGLHLKEQGKRALMVAADVYRPAAIDQ 146 Query: 158 LKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 L+ + + +G+DA +A +A+ + D +++DTAGRL ++ +M Sbjct: 147 LQTLGQQIGVEVFS--LGADARPEDIAAAGIARAKEEGFDTVLVDTAGRLQIDTAMME-- 202 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 +M+R+ + AP VL V+D+ GQ A FH G TG ++TK+DG +RGG Sbjct: 203 -EMVRIRQ---AAAPDEVLLVVDSMIGQEAAELTRAFHEQVGLTGAVLTKLDGDSRGGAA 258 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+G GE + L+PF + ++ I G D Sbjct: 259 LSIRKVSGAPIKFIGTGEKVEALQPFHPERMASRILGMGD 298 >gi|89075050|ref|ZP_01161491.1| putative signal recognition particle protein [Photobacterium sp. SKA34] gi|89049137|gb|EAR54702.1| putative signal recognition particle protein [Photobacterium sp. SKA34] Length = 455 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 153/306 (50%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + ++ RL DD +++ L ++ L+ +D+ + V ++ V+ + K A Sbjct: 2 FENLTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVKRV--KERA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPLS-----KPFNWDFS-HRPHVILVVGVNGVGKTTVIGK 130 V + L E I + L + D S P VIL+ G+ G GKTT +GK Sbjct: 60 VGTEVSKSLTPGQEFIKIVQAELEAVMGEESEGLDLSCQPPAVILMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + KV++ + D +R AAI QL+ A DF S + +A A + Sbjct: 120 LGKLLKERDSKKVLVVSADVYRPAAIKQLETLAGDVGIDFFPSNVEQKPVEIAKAALEHG 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DV+I+DTAGRLH + +M I + + L P L V+DA TGQ+A Sbjct: 180 RLKFYDVVIVDTAGRLHVDEEMMGEIKDVHKTLN------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+I+TK+DG ARGG + + P+ FLG+GE + LEPF ++ Sbjct: 234 KAFNDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGIGEKTDALEPFHPNRVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|317055139|ref|YP_004103606.1| signal recognition particle protein [Ruminococcus albus 7] gi|315447408|gb|ADU20972.1| signal recognition particle protein [Ruminococcus albus 7] Length = 458 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 87/275 (31%), Positives = 146/275 (53%), Gaps = 15/275 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSK 101 +E++ L+ +D+ V + V + + +DV Q+V+ V+E + K++ + Sbjct: 33 KEVKMALLEADVSYKVVKDFVANVTERSVGEDVLKSLTPAQQVIKIVNEELVKLMGEANS 92 Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 N+ S P VI++ G+ G GKTT KL+K G + +L A D +R AAIDQLKI Sbjct: 93 KINFP-SKPPCVIMMCGLQGSGKTTHAAKLAKMFKRQGSRPLLIAADVYRPAAIDQLKIV 151 Query: 162 ADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A++ A E+G D + E KQA+ D++IIDTAGRLH + LM + + + Sbjct: 152 AEK--AQVPVFEMGQIDPRKIVKEGLKQAKDYGNDMVIIDTAGRLHIDEELMDELKDIKK 209 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 + + P ++ V+DA GQ+A++ F G +I+TK+D RGG + ++ Sbjct: 210 IAE------PSEIMLVVDAMIGQDAVKVASSFDEALGIDSVILTKLDSDTRGGAALSVLA 263 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G+GE +++ EPF + ++ I G D Sbjct: 264 VTGKPIKFVGMGEKLDEFEPFHPERMASRILGMGD 298 >gi|307546454|ref|YP_003898933.1| signal recognition particle subunit SRP54 [Halomonas elongata DSM 2581] gi|307218478|emb|CBV43748.1| K03106 signal recognition particle, subunit SRP54 [Halomonas elongata DSM 2581] Length = 471 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 157/305 (51%), Gaps = 18/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + I RL +D V++ L ++ L+ +D+ + V + ++ + + Sbjct: 2 FQNLSDRLSQTLKSIKGQARLTEDNVKDTLREVRRALLEADVALPVVKAFIDRVRERAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++VS Q+ + V + + ++ ++ S P V+L+ G+ G GKTT + KL Sbjct: 62 QEVSKSLSPGQQFVKIVQQELEAIMGEANEGLALKGS--PAVVLMAGLQGAGKTTSVAKL 119 Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 ++ + + KV++ + D +R AAIDQL+ A DF S +A A K A+ Sbjct: 120 ARYLREREKKKVLVVSADVYRPAAIDQLETLAKEVEVDFFPSSSDQQPVDIAEAAIKHAK 179 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + DV+++DTAGRL + +MA I + + +P L V+DA TGQ+A + Sbjct: 180 IQFHDVVLVDTAGRLAIDEAMMAEIQALNSAV------SPDETLFVVDAMTGQDAANTAK 233 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 FH TG+I+TK DG ARGG + + P+ F+GVGE ++ LEPF ++ I Sbjct: 234 AFHEALPLTGVILTKADGDARGGAALSVRHITGKPIKFMGVGEKVDALEPFHPDRVASRI 293 Query: 311 TGCLD 315 G D Sbjct: 294 LGMGD 298 >gi|269836377|ref|YP_003318605.1| signal recognition particle protein [Sphaerobacter thermophilus DSM 20745] gi|269785640|gb|ACZ37783.1| signal recognition particle protein [Sphaerobacter thermophilus DSM 20745] Length = 504 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/285 (29%), Positives = 145/285 (50%), Gaps = 13/285 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 ++ + +D+ +RE + L+ +D+ V + V + + ++V Q+V+ V + Sbjct: 22 LTEQDVDEAMRE-VRRALLEADVNYKVVRDFVSAVRERAVGEEVLKALTPAQQVISIVRD 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + K+L P P +++VVG+ G GKTT + K++ + G + ++ A D + Sbjct: 81 ELIKILGEERVPLQL-AQVPPTIVMVVGLQGSGKTTHVAKIANLLKKEGRRPLMVAADVY 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAIDQL+ + ++ +A A K A+ + V++IDTAGRL + Sbjct: 140 RPAAIDQLQTLGGQIDVPVYSEGTKANPVDIAKNAVKLARDRGYTVVLIDTAGRLQIDEP 199 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 +M + ++ +K PH +L V DA TGQ A+ + FH TGL++TKMDG A Sbjct: 200 MMQEVERIAEAVK------PHEILLVADAMTGQEAVNVAQEFHRRLALTGLVLTKMDGDA 253 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I +P+ ++G GE I+ +EPF ++ I G D Sbjct: 254 RGGAALSIRSVVGVPIKYIGTGERIDAVEPFYPDRLASRILGMGD 298 >gi|88797967|ref|ZP_01113554.1| signal recognition particle protein [Reinekea sp. MED297] gi|88779164|gb|EAR10352.1| signal recognition particle protein [Reinekea sp. MED297] Length = 473 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 99/310 (31%), Positives = 161/310 (51%), Gaps = 24/310 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + + I +L +D ++ L ++ L+ +D+ + V + ++ + T+ Sbjct: 2 FNSLSERLGQTLKQITGQAKLTEDNIKSSLREVRMALLEADVALPVVKAFIDAVKTRAVG 61 Query: 77 KDVSV-----QRVLYDV-SELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIG 129 ++VS Q+ L V SEL+H M + D + P VIL+ G+ G GKTT Sbjct: 62 QEVSQALNPGQQFLKIVQSELVHVMG---EQNEALDLKTQPPAVILMAGLQGAGKTTTTA 118 Query: 130 KLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KLS+ +S+ KVM+ + D +R AAI QL+ A A F S++ A+ A Sbjct: 119 KLSRFLSEREKKKVMVVSADVYRPAAIKQLETLAGEVGALFHPSDVAQKPEAIVKGAIDA 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ + VDVLI+DTAGRL + +MA I + + + P L V+DA TGQ+A Sbjct: 179 ARKQAVDVLIVDTAGRLAVDEAMMAEIQTLHKAVN------PIETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG++++K DG +RGG + + P+ F+G+GE ++ LEPF ++ Sbjct: 233 AKAFSDALPLTGVVLSKADGDSRGGAALSVRHITGKPIKFMGMGEKVDALEPFYPDRIAS 292 Query: 309 VITGCLDYGE 318 I LD G+ Sbjct: 293 RI---LDMGD 299 >gi|313673954|ref|YP_004052065.1| signal recognition particle subunit ffh/srp54 (srp54) [Calditerrivibrio nitroreducens DSM 19672] gi|312940710|gb|ADR19902.1| signal recognition particle subunit FFH/SRP54 (srp54) [Calditerrivibrio nitroreducens DSM 19672] Length = 448 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/270 (31%), Positives = 141/270 (52%), Gaps = 16/270 (5%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYA----KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 L+ +D+ V +K ++ + +K K ++ +V +L+H L+ + + Sbjct: 38 LLEADVNYKVVKKFIDNVQSKAIGEIVLKSLTPDQVFI---KLVHDELVSILGSHTSKIN 94 Query: 109 HRPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 +P+ VI++VG+ G GKTT GKL+K G +L A D +R AAIDQL + ++ Sbjct: 95 LKPNPPTVIMLVGLQGSGKTTTAGKLAKYFQKDGRSTLLVADDIYRPAAIDQLIVLGNQL 154 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 D + +A +A QA+ D++IIDTAGRLH + LM K ++ +K Sbjct: 155 KTDVFYDKESKNATEIAVRGVDQAKKSAKDIVIIDTAGRLHIDEDLM----KELKSIK-- 208 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 + P +L V DA GQ+A+ + F+ G TG+I TK+DG ARGG + I+ +P Sbjct: 209 NAVNPDEILFVADAMIGQDAVNVAKQFNEAIGITGVIFTKLDGDARGGAALSIMEVTGVP 268 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F+G+GE ++ E F ++ I G D Sbjct: 269 IKFVGIGEKLDAFELFHPDRMASRILGMGD 298 >gi|24113948|ref|NP_708458.1| signal recognition particle protein [Shigella flexneri 2a str. 301] gi|30064009|ref|NP_838180.1| signal recognition particle protein [Shigella flexneri 2a str. 2457T] gi|24053055|gb|AAN44165.1| GTP-binding export factor binds to signal sequence, GTP and RNA [Shigella flexneri 2a str. 301] gi|30042265|gb|AAP17990.1| GTP-binding export factor binds to signal sequence, GTP and RNA [Shigella flexneri 2a str. 2457T] gi|281602019|gb|ADA75003.1| GTP-binding export factor binds to signal sequence, GTP and RNA [Shigella flexneri 2002017] gi|313648288|gb|EFS12732.1| signal recognition particle protein [Shigella flexneri 2a str. 2457T] gi|332753356|gb|EGJ83736.1| signal recognition particle protein [Shigella flexneri 4343-70] gi|332755593|gb|EGJ85956.1| signal recognition particle protein [Shigella flexneri 2747-71] gi|332765588|gb|EGJ95801.1| signal recognition particle protein [Shigella flexneri 2930-71] gi|332999385|gb|EGK18970.1| signal recognition particle protein [Shigella flexneri VA-6] gi|333000795|gb|EGK20369.1| signal recognition particle protein [Shigella flexneri K-218] gi|333000982|gb|EGK20552.1| signal recognition particle protein [Shigella flexneri K-272] gi|333015514|gb|EGK34853.1| signal recognition particle protein [Shigella flexneri K-227] gi|333015805|gb|EGK35141.1| signal recognition particle protein [Shigella flexneri K-304] Length = 453 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 95/308 (30%), Positives = 157/308 (50%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V++ L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V + + ++ N + P V+L+ G+ G GKTT +GKL Sbjct: 62 HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A+ Sbjct: 121 GNFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K DVL++DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF + Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|294101553|ref|YP_003553411.1| signal recognition particle protein [Aminobacterium colombiense DSM 12261] gi|293616533|gb|ADE56687.1| signal recognition particle protein [Aminobacterium colombiense DSM 12261] Length = 449 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/209 (37%), Positives = 120/209 (57%), Gaps = 8/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P + ++VG+ G GKTT K++K++ +A ++ A D R AAI+QLK+ A ++ Sbjct: 97 SKPPTLCMMVGLQGSGKTTSAVKIAKRIQNAH-NPLVVACDLRRPAAIEQLKVLAQQSKV 155 Query: 168 DFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 F G+ D +A EA A+ DV+I DTAGRLH + LM + ++ ++ Sbjct: 156 AFYGPSGGTQDVIKVAKEALAYAEDHLNDVIIFDTAGRLHVDEDLMEELSRLKDLVN--- 212 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 PH +L V+DA TGQ A++ FH TG++++K+DG ARGG + I T ++P+ Sbjct: 213 ---PHEILLVVDAMTGQEAVKVATSFHEKLSLTGVVLSKLDGDARGGAALAIRATTQVPI 269 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F GVGEGI+ +E F AK + I G D Sbjct: 270 KFAGVGEGIDAIELFDAKRMAQRIIGMGD 298 >gi|152971460|ref|YP_001336569.1| signal recognition particle protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206578967|ref|YP_002237051.1| signal recognition particle protein [Klebsiella pneumoniae 342] gi|238896056|ref|YP_002920792.1| signal recognition particle protein [Klebsiella pneumoniae NTUH-K2044] gi|288934014|ref|YP_003438073.1| signal recognition particle protein [Klebsiella variicola At-22] gi|290510926|ref|ZP_06550295.1| signal recognition particle protein [Klebsiella sp. 1_1_55] gi|150956309|gb|ABR78339.1| 4.5S-RNP protein, GTP-binding export factor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206568025|gb|ACI09801.1| signal recognition particle protein [Klebsiella pneumoniae 342] gi|238548374|dbj|BAH64725.1| SRP component with 4.5S RNA [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|288888743|gb|ADC57061.1| signal recognition particle protein [Klebsiella variicola At-22] gi|289775919|gb|EFD83918.1| signal recognition particle protein [Klebsiella sp. 1_1_55] Length = 454 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/212 (37%), Positives = 116/212 (54%), Gaps = 13/212 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT +GKL K + + KV++ + D +R AAI QL+ A++ Sbjct: 97 AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S++G + A K+A+ K DVL++DTAGRLH + +M I + Sbjct: 157 VDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKHV-------- 208 Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 HA P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ FLGVGE LEPF ++ I G D Sbjct: 268 KPIKFLGVGEKTEALEPFHPDRVASRILGMGD 299 >gi|92115132|ref|YP_575060.1| signal recognition particle subunit FFH/SRP54 (srp54) [Chromohalobacter salexigens DSM 3043] gi|91798222|gb|ABE60361.1| signal recognition particle subunit FFH/SRP54 (srp54) [Chromohalobacter salexigens DSM 3043] Length = 474 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 91/305 (29%), Positives = 155/305 (50%), Gaps = 18/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L + I +L +D +++ L ++ L+ +D+ + V + VE + + Sbjct: 2 FESLTERLSGTLKSITGQAKLTEDNIKDTLREVRRALLEADVALPVVKAFVERVRERAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++VS Q+ + V + + ++ ++ + S P VIL+ G+ G GKTT + KL Sbjct: 62 QEVSRSLSPGQQFVKIVQQELEAIMGEANEALSLKSS--PSVILMAGLQGAGKTTSVAKL 119 Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 ++ + + KV++ + D +R AAIDQL+ A+ DF S +A A K A+ Sbjct: 120 ARFLREREKKKVLVVSADVYRPAAIDQLETLANEVEVDFFPSTSAQRPVEIAQAAIKHAK 179 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + D++I+DTAGRL + +M I + P L V+DA TGQ+A + Sbjct: 180 IQFHDIVIVDTAGRLSVDQAMMEEIQALHGAT------TPDETLFVVDAMTGQDAANTAQ 233 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 FH TG+I+TK DG ARGG + + P+ F+G+GE ++ LEPF ++ I Sbjct: 234 AFHEALPLTGVILTKADGDARGGAALSVRHVTGKPIKFMGMGEKVDALEPFHPDRVASRI 293 Query: 311 TGCLD 315 G D Sbjct: 294 LGMGD 298 >gi|46130818|ref|XP_389140.1| hypothetical protein FG08964.1 [Gibberella zeae PH-1] Length = 521 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 88/297 (29%), Positives = 147/297 (49%), Gaps = 21/297 (7%) Query: 27 KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS------ 80 ++ +T++ + LD+ +E+ L+ +D+ V + ++ + + T K++ Sbjct: 9 RINAAVTNLTREQNLDE---KEICAALLEADVNVKLVGQLRKSIKTTVNFKELPPAVNKK 65 Query: 81 --VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138 +Q+ ++D EL+ K++ P ++PF + +VI+ VG+ G GKTT KL++ Sbjct: 66 RLIQKAVFD--ELV-KLVDPHAEPFRPK-KGKSNVIMFVGLQGAGKTTTCTKLARHYQSR 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 G K L DTFR+ A DQLK A + + S +D A +A Q + ++ +V+I Sbjct: 122 GFKACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAEVARAGVDQFKKERFEVII 181 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +DT+GR S L + + +K P + VLDA+ GQ A Q + F A Sbjct: 182 VDTSGRHRQESALFQEMVDIQEAIK------PDETIMVLDASIGQQAESQAKAFKEAADF 235 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK DG A GGG I V P+ F+G GE + D E F + F + G D Sbjct: 236 GAIIITKTDGHAHGGGAISAVAATHTPIVFIGTGEHMLDFEKFAPQQFVQKLLGMGD 292 >gi|85860175|ref|YP_462377.1| signal recognition particle GTPase [Syntrophus aciditrophicus SB] gi|85723266|gb|ABC78209.1| signal recognition particle GTPase [Syntrophus aciditrophicus SB] Length = 444 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 91/305 (29%), Positives = 165/305 (54%), Gaps = 18/305 (5%) Query: 21 FASTSLKLKEGITDIISSR-RLDD-GVREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75 F + + KL EG+ + R RLD+ ++E L+++ L+ +D+ V + +EE+ ++ Sbjct: 2 FENLAEKL-EGVFKRLKGRGRLDEENIKEALKEIRMALLEADVNFKVVKDFIEEVRSRAV 60 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++V Q+++ V + + ++L S + S P I++VG+ G GKTT K Sbjct: 61 GQEVLESITPGQQIVKIVHDRLVELLGGTSSQLRFG-SRFPAPIMLVGLQGCGKTTTAVK 119 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K ++ G + L + D +R AA++QL++ A + A ++ D + +A ++A+ Sbjct: 120 LAKVLAKGGKRAGLVSADVYRPAAMEQLRVMAQKIGAPAFNADSSQDPVKICVQAVEEAK 179 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 +VLI+DTAGRL ++ +M + ++ + P +L V DA TGQ+A+ Sbjct: 180 RNGYEVLILDTAGRLAIDTQMMEELKQIKNAVN------PSEILFVADAMTGQDAVNVAA 233 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ + G G+IMTKMDG ARGG + + P+ ++G+GE I+ LE F + ++ I Sbjct: 234 KFNELLGIDGVIMTKMDGDARGGAALSLKAVMGKPIKYVGIGEKIDALEVFHPERMASRI 293 Query: 311 TGCLD 315 G D Sbjct: 294 LGMGD 298 >gi|90580366|ref|ZP_01236173.1| putative signal recognition particle protein [Vibrio angustum S14] gi|90438668|gb|EAS63852.1| putative signal recognition particle protein [Vibrio angustum S14] Length = 455 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 98/306 (32%), Positives = 153/306 (50%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + ++ RL DD +++ L ++ L+ +D+ + V ++ V+ + K A Sbjct: 2 FENLTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVKRV--KERA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPLS-----KPFNWDFS-HRPHVILVVGVNGVGKTTVIGK 130 V + L E I + L + D S P VIL+ G+ G GKTT +GK Sbjct: 60 VGTEVSKSLTPGQEFIKIVQAELEAVMGEENEGLDLSCQPPAVILMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + KV++ + D +R AAI QL+ A DF S + +A A + Sbjct: 120 LGKLLKERDSKKVLVVSADVYRPAAIKQLETLAGDVGIDFFPSNVEQKPVEIAKAALEHG 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DV+I+DTAGRLH + +M I + + L P L V+DA TGQ+A Sbjct: 180 KLKFYDVVIVDTAGRLHVDEEMMDEIKDVHKTLN------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+I+TK+DG ARGG + + P+ FLGVGE + LEPF ++ Sbjct: 234 KAFNDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPNRVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|262043856|ref|ZP_06016945.1| fifty-four-like protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330013034|ref|ZP_08307556.1| signal recognition particle protein [Klebsiella sp. MS 92-3] gi|259038790|gb|EEW39972.1| fifty-four-like protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328533620|gb|EGF60334.1| signal recognition particle protein [Klebsiella sp. MS 92-3] Length = 486 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/212 (37%), Positives = 116/212 (54%), Gaps = 13/212 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT +GKL K + + KV++ + D +R AAI QL+ A++ Sbjct: 129 AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG 188 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S++G + A K+A+ K DVL++DTAGRLH + +M I + Sbjct: 189 VDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKHV-------- 240 Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 HA P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I Sbjct: 241 -HAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 299 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ FLGVGE LEPF ++ I G D Sbjct: 300 KPIKFLGVGEKTEALEPFHPDRVASRILGMGD 331 >gi|310766680|gb|ADP11630.1| signal recognition particle protein [Erwinia sp. Ejp617] Length = 453 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 115/212 (54%), Gaps = 13/212 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P VIL+ G+ G GKTT +GKL K + + KV++ + D +R AAI QL+ A++ Sbjct: 97 AQPPAVILMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S++ + A +QA+ K DVL++DTAGRLH + +M I ++ Sbjct: 157 VDFCPSDLSQRPVDIVKNALQQAKLKFYDVLLVDTAGRLHVDEAMMDEIKQV-------- 208 Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 HA P L V+DA TGQ+A F+ TG+++TK+DG ARGG + I Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTARAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+GVGE LEPF ++ I G D Sbjct: 268 KPIKFMGVGEKTEALEPFYPDRIASRILGMGD 299 >gi|260588673|ref|ZP_05854586.1| signal recognition particle protein [Blautia hansenii DSM 20583] gi|331081978|ref|ZP_08331106.1| signal recognition particle protein [Lachnospiraceae bacterium 6_1_63FAA] gi|260541148|gb|EEX21717.1| signal recognition particle protein [Blautia hansenii DSM 20583] gi|330405573|gb|EGG85103.1| signal recognition particle protein [Lachnospiraceae bacterium 6_1_63FAA] Length = 448 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S + KL+ ++ RL + V+ L+++ L+ +D+ V ++ ++ + + Sbjct: 3 FESLTDKLQNVFKNLRKKGRLTEADVKAALKEVKMALLEADVSFKVVKQFMKAVQERAIG 62 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + K++ + + V+++VG+ G GKTT KL Sbjct: 63 QDVMSGLNPGQMVIKIVNEELVKLMGSETTEIALKSGNEVTVLMMVGLQGAGKTTTTAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K+ G K +LAA D +R AAI QL++ ++ D + +A A++ A+ Sbjct: 123 AGKLKSKGKKPLLAACDVYRPAAIKQLQVNGEKQGVDVFSMGDKNSPVDIAKAAYEHAKN 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +K +VLI+DTAGRLH + +M + K+ + L V+DA TGQ+A+ E Sbjct: 183 EKYNVLILDTAGRLHIDEDMMEELEKIKEAI------TVDQTLLVVDAMTGQDAVNVAET 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F G G+I+TKMDG RGG + I P+ ++G+GE ++DLE F + ++ I Sbjct: 237 FGEKVGIDGVILTKMDGDTRGGAALSIKAISGKPILYVGMGEKLSDLEQFYPERMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|110806722|ref|YP_690242.1| signal recognition particle protein [Shigella flexneri 5 str. 8401] gi|110616270|gb|ABF04937.1| Signal recognition particle protein [Shigella flexneri 5 str. 8401] Length = 453 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 95/308 (30%), Positives = 157/308 (50%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V++ L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V + + ++ N + P V+L+ G+ G GKTT +GKL Sbjct: 62 HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A+ Sbjct: 121 GNFLHEKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K DVL++DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF + Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|317121794|ref|YP_004101797.1| signal recognition particle subunit FFH/SRP54 (srp54) [Thermaerobacter marianensis DSM 12885] gi|315591774|gb|ADU51070.1| signal recognition particle subunit FFH/SRP54 (srp54) [Thermaerobacter marianensis DSM 12885] Length = 445 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/258 (32%), Positives = 135/258 (52%), Gaps = 21/258 (8%) Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHV-ILVV 117 AV Q+++E L Q+V+ +++H L L + D P V +++V Sbjct: 60 AVGQEVLESL--------TPAQQVI----KIVHDELTQLMGGQQARLDLGGAPPVPVMLV 107 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 G+ G GKTT KL++ ++ G + +L A D +R AA++QL + D Sbjct: 108 GLQGSGKTTTAAKLARLLARQGRQPLLVAADVYRPAAVEQLVTLGQQIQLPVHAPGTDRD 167 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 +A E +A+ + DV+IIDTAGRLH + LM + ++ + + AP +L V+ Sbjct: 168 PVDIAREGVAEARRRGRDVVIIDTAGRLHIDDALMEELERIRQAV------APREILLVV 221 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA TGQ+A+ E FH G G+++TK+DG ARGG + + P+ F+G+GE ++ Sbjct: 222 DAMTGQDAVNVAETFHRRLGIDGVVLTKLDGDARGGAALSVRAVTGRPIKFVGLGERVDQ 281 Query: 298 LEPFVAKDFSAVITGCLD 315 LEPF + ++ I G D Sbjct: 282 LEPFHPERMASRILGMGD 299 >gi|239501248|ref|ZP_04660558.1| signal recognition particle protein [Acinetobacter baumannii AB900] Length = 469 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 158/295 (53%), Gaps = 25/295 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + ++ S +L +D +++ L ++ L+ +D+ + V ++ + ++ + Sbjct: 2 FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61 Query: 77 KDVSVQ--------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTV 127 ++V Q +++YD + KM+ ++ D S +P V+ L+ G+ G GKTT Sbjct: 62 QEVMTQLSPGQAFVKIVYDE---LTKMMGEANE--TLDLSAKPPVVVLLAGLQGAGKTTT 116 Query: 128 IGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL++ + + KVM + D +R AAI QL+ + A F+ S+ + A Sbjct: 117 AAKLARFLKERQKKKVMTVSADVYRPAAIKQLETVSAEVGAGFIPSDPSEKPIDIVNRAI 176 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 +QA+ + DVLI+DTAGRLH + +M I ++ +K P L V+DA TGQ+A Sbjct: 177 EQAKIQFADVLIVDTAGRLHVDEDMMDEIKELHAAVK------PTETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F+ TG+I+TK DG ARGG + + P+ FLG+GE ++ LEPF Sbjct: 231 NTAKAFNDALALTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPF 285 >gi|169634139|ref|YP_001707875.1| GTP-binding signal recognition particle protein [Acinetobacter baumannii SDF] gi|169797016|ref|YP_001714809.1| GTP-binding signal recognition particle protein [Acinetobacter baumannii AYE] gi|184157071|ref|YP_001845410.1| Signal recognition particle GTPase [Acinetobacter baumannii ACICU] gi|213156580|ref|YP_002318241.1| signal recognition particle protein [Acinetobacter baumannii AB0057] gi|215484476|ref|YP_002326711.1| signal recognition particle protein [Acinetobacter baumannii AB307-0294] gi|260555692|ref|ZP_05827912.1| signal recognition particle protein [Acinetobacter baumannii ATCC 19606] gi|301347727|ref|ZP_07228468.1| signal recognition particle protein [Acinetobacter baumannii AB056] gi|301512475|ref|ZP_07237712.1| signal recognition particle protein [Acinetobacter baumannii AB058] gi|301594393|ref|ZP_07239401.1| signal recognition particle protein [Acinetobacter baumannii AB059] gi|332852104|ref|ZP_08433931.1| signal recognition particle protein [Acinetobacter baumannii 6013150] gi|332867502|ref|ZP_08437655.1| signal recognition particle protein [Acinetobacter baumannii 6013113] gi|332872647|ref|ZP_08440615.1| signal recognition particle protein [Acinetobacter baumannii 6014059] gi|169149943|emb|CAM87837.1| 4.5S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNA [Acinetobacter baumannii AYE] gi|169152931|emb|CAP01972.1| 4.5S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNA [Acinetobacter baumannii] gi|183208665|gb|ACC56063.1| Signal recognition particle GTPase [Acinetobacter baumannii ACICU] gi|213055740|gb|ACJ40642.1| signal recognition particle protein [Acinetobacter baumannii AB0057] gi|213988852|gb|ACJ59151.1| signal recognition particle protein [Acinetobacter baumannii AB307-0294] gi|260410603|gb|EEX03901.1| signal recognition particle protein [Acinetobacter baumannii ATCC 19606] gi|322506970|gb|ADX02424.1| Signal recognition particle GTPase [Acinetobacter baumannii 1656-2] gi|323516837|gb|ADX91218.1| Signal recognition particle GTPase [Acinetobacter baumannii TCDC-AB0715] gi|332729476|gb|EGJ60815.1| signal recognition particle protein [Acinetobacter baumannii 6013150] gi|332733919|gb|EGJ65064.1| signal recognition particle protein [Acinetobacter baumannii 6013113] gi|332739176|gb|EGJ70035.1| signal recognition particle protein [Acinetobacter baumannii 6014059] Length = 469 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 158/295 (53%), Gaps = 25/295 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + ++ S +L +D +++ L ++ L+ +D+ + V ++ + ++ + Sbjct: 2 FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61 Query: 77 KDVSVQ--------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTV 127 ++V Q +++YD + KM+ ++ D S +P V+ L+ G+ G GKTT Sbjct: 62 QEVMTQLSPGQAFVKIVYDE---LTKMMGEANE--TLDLSAKPPVVVLLAGLQGAGKTTT 116 Query: 128 IGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL++ + + KVM + D +R AAI QL+ + A F+ S+ + A Sbjct: 117 AAKLARFLKERQKKKVMTVSADVYRPAAIKQLETVSAEVGAGFIPSDPSEKPIDIVNRAI 176 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 +QA+ + DVLI+DTAGRLH + +M I ++ +K P L V+DA TGQ+A Sbjct: 177 EQAKIQFADVLIVDTAGRLHVDEDMMDEIKELHAAVK------PTETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F+ TG+I+TK DG ARGG + + P+ FLG+GE ++ LEPF Sbjct: 231 NTAKAFNDALALTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPF 285 >gi|110597444|ref|ZP_01385731.1| signal recognition particle protein [Chlorobium ferrooxidans DSM 13031] gi|110340988|gb|EAT59459.1| signal recognition particle protein [Chlorobium ferrooxidans DSM 13031] Length = 449 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/268 (32%), Positives = 137/268 (51%), Gaps = 12/268 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ VA+K++E++ K + V Q ++ V + + +++ KP N Sbjct: 38 LLGADVNYKVAKKLIEDIREKSLGEQVIKSVSPAQMIVKIVYDELTELMGGEQKPLNLSP 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 P VI+V G+ G GKTT KL+ ++ G ML A D +R AAIDQLK A + Sbjct: 98 KKLPAVIMVAGLQGSGKTTFCAKLALRLKKNGKNPMLVAADVYRPAAIDQLKALALQVEV 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 E DA A + + A++ DV+IIDTAGRL + ++MA + LK Sbjct: 158 PVFAIE-EQDALKAALQGLEAARSGARDVVIIDTAGRLQIDDLMMAEAESLKHALK---- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ GQ A+ + F+ G+++TK+DG ARGG + I + P+ Sbjct: 213 --PDELLFVVDSMMGQEAVNTAKAFNDRLDFDGVVLTKLDGDARGGAALSIRQVVEKPIK 270 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ +GE ++DL+ F + I G D Sbjct: 271 FISIGEKVDDLDVFYPDRMAQRILGMGD 298 >gi|292900328|ref|YP_003539697.1| signal recognition particle protein [Erwinia amylovora ATCC 49946] gi|291200176|emb|CBJ47304.1| signal recognition particle protein [Erwinia amylovora ATCC 49946] Length = 453 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 116/212 (54%), Gaps = 13/212 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P VIL+ G+ G GKTT +GKL K + + KV++ + D +R AAI QL+ A++ Sbjct: 97 AQPPAVILMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S++ + A +QA+ K DVL++DTAGRLH + +M I ++ Sbjct: 157 VDFCPSDLTQQPVDIVKNALQQAKLKFYDVLLVDTAGRLHVDEAMMDEIKQV-------- 208 Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 HA P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+GVGE LEPF ++ I G D Sbjct: 268 KPIKFMGVGEKTEALEPFYPDRIASRILGMGD 299 >gi|78356147|ref|YP_387596.1| signal recognition particle subunit FFH/SRP54 (srp54) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218552|gb|ABB37901.1| signal recognition particle subunit FFH/SRP54 (srp54) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 512 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/285 (30%), Positives = 152/285 (53%), Gaps = 13/285 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 ++ + +G+RE + L+ +D+ V ++ ++ + K +DV Q+V+ V++ Sbjct: 22 LTEENVQEGLRE-VRLALLEADVNFKVVKQFIDRVRDKCLGQDVLKGLNPAQQVIKIVND 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + ++L + + +P+VI++VG+ G GKTT GKL+ + + ++ LA D + Sbjct: 81 EMIELLGGETTGLDLR-GQQPYVIMMVGLQGSGKTTSTGKLANHLRKSKMRPYLAPADVY 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAIDQLK A + S + + +A A A+ ++ +V+I+DTAGRLH + Sbjct: 140 RPAAIDQLKTLAAQLDLPVYDSTVQMNPVDIARNAVAAAREQQCNVVILDTAGRLHIDET 199 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + + + AP +L V DA TGQ+A+ + F+ TG+++TKMDG A Sbjct: 200 LMQELVAIKEAV------APQEILFVADAMTGQDAVTVADAFNNALDITGVVLTKMDGDA 253 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I V F+G+GE ++DLE F ++ I G D Sbjct: 254 RGGAALSIKTVTGKSVKFVGMGEKLSDLEVFHPDRIASRILGMGD 298 >gi|20093371|ref|NP_619446.1| signal recognition particle protein Srp54 [Methanosarcina acetivorans C2A] gi|23822174|sp|Q8THD0|SRP54_METAC RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|19918737|gb|AAM07926.1| signal recognition particle, 54 kDa protein [Methanosarcina acetivorans C2A] Length = 440 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 97/301 (32%), Positives = 153/301 (50%), Gaps = 30/301 (9%) Query: 28 LKEGITDIISSRRLDD-GVREELEDL---LIRSDIGV----AVAQKIVEELLTKRYAKDV 79 L+ + +I + R+D+ V E ++D+ L+++D+ V ++Q+I E + + + Sbjct: 10 LQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERAMKEEPPAGM 69 Query: 80 S----VQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 + V R++Y ++ E+I K + +P I++VG+ G GKTT KL++ Sbjct: 70 NPREHVIRIVYQELMEIIGK---------GAEIQLKPQTIMMVGLQGSGKTTSAAKLARY 120 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 GLK + A DTFR A QLK A++ + F E DA + K + K Sbjct: 121 FQRKGLKAGVVAADTFRPGAYHQLKTLAEKLNVGFYGEEGNPDAVEITKNGLKALE--KY 178 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D+ I+DTAGR + L+ + ++ V K P VLDA GQ A +Q F+ Sbjct: 179 DIRIVDTAGRHALEADLIEEMERIHAVAK------PDHKFMVLDAGIGQQASQQAHAFND 232 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 G TG+I+TK+DGTA+GGG + V K P+ F+GVGE D E F A F + + G Sbjct: 233 SVGITGVIITKLDGTAKGGGALSAVSETKAPIAFIGVGETPEDFEKFEADRFISRLLGMG 292 Query: 315 D 315 D Sbjct: 293 D 293 >gi|317133004|ref|YP_004092318.1| signal recognition particle protein [Ethanoligenens harbinense YUAN-3] gi|315470983|gb|ADU27587.1| signal recognition particle protein [Ethanoligenens harbinense YUAN-3] Length = 443 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 153/304 (50%), Gaps = 17/304 (5%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S KL + S +L + VR+ + ++ L+ +D+ +A++ V ++ + Sbjct: 3 FEGLSEKLSAAFKRLRSKGKLTEADVRQAMREVRLALLEADVNYKIAKQFVNDVTERAIG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 V Q+V+ V+E + ++ + S P VIL+ G+ G GKTT KL Sbjct: 63 SAVLESLTPAQQVIKIVNEELTALMGGEQSRIRY-ASKPPTVILLCGLQGSGKTTHAAKL 121 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + M G + +LAA D +R AAI QL++ ++ V + D +A A A+ Sbjct: 122 ALSMKKQGKRPLLAACDVYRPAAIKQLQVVGEKAGVP-VFEQGQGDPVKIAKAALHHAKD 180 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 DVLI+DTAGRLH + LM + ++ ++ P +L V+DA TGQ+A+ Sbjct: 181 HGSDVLILDTAGRLHVDEALMDELKRIKAAVE------PDEILLVVDAMTGQDAVNVASS 234 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ V G G+I+TK+DG RGG + + P+ F G GE ++DLEPF + ++ I Sbjct: 235 FNEVLGIDGVILTKLDGDTRGGAALSVRAVTGKPIKFAGTGEKLDDLEPFHPERMASRIL 294 Query: 312 GCLD 315 G D Sbjct: 295 GMGD 298 >gi|241759064|ref|ZP_04757175.1| signal recognition particle protein [Neisseria flavescens SK114] gi|241320666|gb|EER56919.1| signal recognition particle protein [Neisseria flavescens SK114] Length = 456 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/286 (30%), Positives = 152/286 (53%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + + ++V Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFVNTVKEQALGQEVVGSLTPDQAFIGVVNQALV 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + S P ++L+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGKENKTLDLSVSP-PAIVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA GQ+A+ + F+ TG+++TKMDG Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299 >gi|261342041|ref|ZP_05969899.1| signal recognition particle protein [Enterobacter cancerogenus ATCC 35316] gi|288315697|gb|EFC54635.1| signal recognition particle protein [Enterobacter cancerogenus ATCC 35316] Length = 453 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 117/212 (55%), Gaps = 13/212 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT +GKL K + + KV++ + D +R AAI QL+ A++ Sbjct: 97 AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S++ + A K+A+ K DVL++DTAGRLH + +M I ++ Sbjct: 157 VDFFPSDVAQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQV-------- 208 Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 HA P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I Sbjct: 209 -HASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ FLGVGE + LEPF ++ I G D Sbjct: 268 KPIKFLGVGEKTDALEPFHPDRIASRILGMGD 299 >gi|302349271|ref|YP_003816909.1| Signal recognition 54 kDa protein [Acidilobus saccharovorans 345-15] gi|302329683|gb|ADL19878.1| Signal recognition 54 kDa protein [Acidilobus saccharovorans 345-15] Length = 444 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 97/284 (34%), Positives = 148/284 (52%), Gaps = 20/284 (7%) Query: 43 DGVREELEDL---LIRSDIGVAVAQK----IVEELLTKRYAKDVSVQ----RVLYDVSEL 91 D V E + DL LIR+D+ VA+ ++ I + L + VS + +++Y+ EL Sbjct: 21 DSVEEFIRDLQRELIRADVNVALVKRLSDAIRQRALEQEPPPGVSRRDWFLKIVYE--EL 78 Query: 92 IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 + + +P + + P VIL+VGV G GKTT GKL++ S G +V L DT+R Sbjct: 79 VK--VFGGEEPPSVEPRKVPWVILLVGVQGSGKTTTAGKLARFYSARGYRVGLVETDTYR 136 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 A++QL+ A + A F G A +A K+ +++ V+I+DTAGR H Sbjct: 137 PGALEQLRTLAQMSGALFYGEPAGR-AEEIASRGVKELESRGAQVIIVDTAGR-HGYGDE 194 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 A + +M R+ D +P V V+DA GQ A FH +I+TK+DGTA+ Sbjct: 195 QALLDEMRRIA---DAVSPDEVALVVDAAIGQRAFDLARRFHEATPIGTIIVTKLDGTAK 251 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 GGG++ V V F+G GE +++LEPF + F + I G D Sbjct: 252 GGGVLSAVAATGARVKFVGTGEKVDELEPFDPQGFVSRIMGLGD 295 >gi|325680130|ref|ZP_08159696.1| signal recognition particle protein [Ruminococcus albus 8] gi|324108205|gb|EGC02455.1| signal recognition particle protein [Ruminococcus albus 8] Length = 457 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/280 (31%), Positives = 150/280 (53%), Gaps = 18/280 (6%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML 96 VRE ++++ L+ +D+ V + V + + +DV Q+V+ V++ + K++ Sbjct: 28 VREAMKEVKMALLEADVSYKVVKDFVANVTERSVGEDVLKSLTPGQQVIKIVNDELVKLM 87 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 + N+ S P VI++ G+ G GKTT KL+K G + +L A D +R AAID Sbjct: 88 GEANSKINFP-SKPPCVIMMCGLQGSGKTTHAAKLAKMFKRQGNRPLLIAADVYRPAAID 146 Query: 157 QLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 QLKI A++ AD E+G D + + KQA+ D++IIDTAGRLH + LM + Sbjct: 147 QLKIVAEK--ADVPVFEMGQIDPRKIVKQGLKQAKDYGNDLVIIDTAGRLHIDEELMDEL 204 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 + ++ + P ++ V+DA GQ+A++ F G +I+TK+D RGG Sbjct: 205 KDIKKIAE------PSEIMLVVDAMIGQDAVKVASSFDEALGIDSVILTKLDSDTRGGAA 258 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + ++ P+ F+G+GE +++ EPF + ++ I G D Sbjct: 259 LSVLAVTGKPIKFVGMGEKLDEFEPFHPERMASRILGMGD 298 >gi|319639652|ref|ZP_07994399.1| signal recognition particle signal sequence binding protein Ffh [Neisseria mucosa C102] gi|317399223|gb|EFV79897.1| signal recognition particle signal sequence binding protein Ffh [Neisseria mucosa C102] Length = 456 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/286 (30%), Positives = 152/286 (53%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + + ++V Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFVNTVKEQALGQEVVGSLTPDQAFIGVVNQALV 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + S P ++L+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGKENKTLDLSVSP-PAIVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA GQ+A+ + F+ TG+++TKMDG Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299 >gi|304311868|ref|YP_003811466.1| Signal recognition particle protein [gamma proteobacterium HdN1] gi|301797601|emb|CBL45822.1| Signal recognition particle protein [gamma proteobacterium HdN1] Length = 464 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 92/286 (32%), Positives = 146/286 (51%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93 +D +++ L ++ L+ +D+ + V + +E++ + ++V Q + V+E + Sbjct: 24 EDNIKDTLREVRMALLEADVALPVVKDFIEQVKERAIGQEVMKSLSPDQAFIKIVNEQLI 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 ++ + N P VIL+ G+ G GKTT + KL+ + KVM+A+ D +R Sbjct: 84 HVMGDANDELNL-ACQPPAVILMAGLQGAGKTTTVAKLAAFLIGRQKKKVMVASADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI QL+ AD A F S I D +A A +QA+ K +D++IIDTAGRL + +M Sbjct: 143 AAIKQLETLADAVGAQFFPSTIEQDPVDIASAAIEQARKKFMDIVIIDTAGRLAVDQEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I ++ HA P L V+DA TGQ+A F TG+++TK DG Sbjct: 203 DEIRRL---------HAAITPIETLFVVDAMTGQDAANTARAFGEALPLTGVVLTKTDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ARGG + + P+ F+GVGE + LEPF ++ I G D Sbjct: 254 ARGGAALSVRAITGKPIKFIGVGEKTDALEPFYPDRIASRILGMGD 299 >gi|261380661|ref|ZP_05985234.1| signal recognition particle protein [Neisseria subflava NJ9703] gi|284796646|gb|EFC51993.1| signal recognition particle protein [Neisseria subflava NJ9703] Length = 456 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/286 (30%), Positives = 152/286 (53%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + + ++V Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFVNTVKEQALGQEVVGSLTPDQAFIGVVNQALI 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + S P ++L+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGKENKTLDLSVSP-PAIVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA GQ+A+ + F+ TG+++TKMDG Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299 >gi|161870769|ref|YP_001599942.1| signal recognition particle protein [Neisseria meningitidis 053442] gi|161596322|gb|ABX73982.1| signal recognition particle protein [Neisseria meningitidis 053442] Length = 456 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 152/286 (53%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + K ++V+ Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNKALT 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + + P V+L+ G+ G GKTT GKL++ + +D KV++ + D +R Sbjct: 84 ELMGRENKTLDLSVAP-PAVVLMAGLQGAGKTTTAGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA GQ+A+ + F+ TG+++TKMDG Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299 >gi|332754035|gb|EGJ84407.1| signal recognition particle protein [Shigella flexneri K-671] Length = 340 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 95/308 (30%), Positives = 157/308 (50%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V++ L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V + + ++ N + P V+L+ G+ G GKTT +GKL Sbjct: 62 HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A+ Sbjct: 121 GNFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K DVL++DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF + Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|28210935|ref|NP_781879.1| signal recognition particle, subunit ffh/srp54 [Clostridium tetani E88] gi|28203374|gb|AAO35816.1| signal recognition particle, subunit ffh/srp54 [Clostridium tetani E88] Length = 451 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 84/285 (29%), Positives = 154/285 (54%), Gaps = 13/285 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 +S + + + +RE + L+ +D+ + + V+ + K K+V Q+V+ V++ Sbjct: 23 LSEKDIKEAMRE-VRLALLEADVNYKIVKDFVKSVSEKCNGKEVLESLTPGQQVVKIVND 81 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + +++ N++ +++P VI++VG+ G GKTT+ GKL+ ++ K +L A D + Sbjct: 82 ELIELMGSKESEINFE-ANKPTVIMLVGLQGAGKTTMAGKLALQLRKKNKKPLLVACDIY 140 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAI QL++ + ++ ++ A K A+ ++ +IIDTAGRLH + Sbjct: 141 RPAAIKQLQVVGSQIDVPVFTLGDKTNPVDISKAAIKHAKENNLNTIIIDTAGRLHIDEN 200 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + + ++ P+ VL V+D+ TGQ+A+ E F+ +G+I+TK+DG Sbjct: 201 LMDELKSIKENIE------PNEVLLVVDSMTGQDAINVAESFNEKLNISGVILTKLDGDT 254 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I P+ F+G+GE +NDLE F + ++ I G D Sbjct: 255 RGGAALSIKAMTGKPIKFIGIGEKMNDLEVFYPERMASRILGMGD 299 >gi|206900972|ref|YP_002251247.1| signal recognition particle protein [Dictyoglomus thermophilum H-6-12] gi|206740075|gb|ACI19133.1| signal recognition particle protein [Dictyoglomus thermophilum H-6-12] Length = 436 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/208 (37%), Positives = 113/208 (54%), Gaps = 8/208 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S +P +ILVVG+ G GKTT KL+ K++ +V+L DTFR AA QL+I A++ Sbjct: 97 SKKPGIILVVGLQGSGKTTTCAKLAYKLAQEQRRVLLVGADTFRPAAGKQLQILAEKIKV 156 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 G + A + A+ K DV+I+DT GRLH + +M + ++ + Sbjct: 157 PVYVD--GKGPFEIIDGALEVAKEKLSDVMIVDTTGRLHIDEEMMNELNELNK------R 208 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 + P +L V+D TGQ+A+ E F+ TG+I+TKMDG ARGG + + P+ Sbjct: 209 YNPSEILLVVDGMTGQDAVNIAEKFNEKLPLTGVILTKMDGDARGGAALSVKAITGKPIK 268 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+GVGE I DLE F ++ I G D Sbjct: 269 FIGVGEKIEDLEYFYPDRLASRILGMGD 296 >gi|257086986|ref|ZP_05581347.1| signal recognition particle protein [Enterococcus faecalis D6] gi|256995016|gb|EEU82318.1| signal recognition particle protein [Enterococcus faecalis D6] gi|315027856|gb|EFT39788.1| signal recognition particle protein [Enterococcus faecalis TX2137] Length = 472 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 98/309 (31%), Positives = 163/309 (52%), Gaps = 23/309 (7%) Query: 20 GFASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75 F S + +L++ ++ I ++ + V+E + ++ L+ +D+ + V + + + + Sbjct: 2 AFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERAV 61 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129 +V Q+++ V E + K L S+ + S + P VI++ G+ G GKTT G Sbjct: 62 GVEVLESLSPAQQIVKIVDEELTKTLG--SETVELNKSPKIPTVIMMTGLQGAGKTTFTG 119 Query: 130 KLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAF 186 KL+K M + +L AGD +R AAIDQLK+ + + ++G+DA + + Sbjct: 120 KLAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQL--EVPVFDMGTDANPVEIVRQGL 177 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A+ KK D ++IDTAGRLH + LM + K I+ L P+ +L V+DA TGQ+A+ Sbjct: 178 ALAKEKKNDYVLIDTAGRLHIDEALMDEL-KQIKELAN-----PNEILLVVDAMTGQDAV 231 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ G TG+++TKMDG RGG + I P+ F+G GE + DLE F Sbjct: 232 NVADSFNEQLGITGVVITKMDGDTRGGAALSIRAVTSAPIKFVGSGEKLTDLEIFHPDRM 291 Query: 307 SAVITGCLD 315 S+ I G D Sbjct: 292 SSRILGMGD 300 >gi|325128967|gb|EGC51819.1| signal recognition particle protein [Neisseria meningitidis N1568] gi|325131638|gb|EGC54344.1| signal recognition particle protein [Neisseria meningitidis M6190] gi|325139014|gb|EGC61561.1| signal recognition particle protein [Neisseria meningitidis ES14902] gi|325145234|gb|EGC67514.1| signal recognition particle protein [Neisseria meningitidis M01-240013] gi|325199007|gb|ADY94463.1| signal recognition particle protein [Neisseria meningitidis G2136] Length = 456 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 152/286 (53%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + K ++V+ Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNKALT 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + + P V+L+ G+ G GKTT GKL++ + +D KV++ + D +R Sbjct: 84 ELMGRENKTLDLSVAP-PAVVLMAGLQGAGKTTTAGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA GQ+A+ + F+ TG+++TKMDG Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299 >gi|109897991|ref|YP_661246.1| signal recognition particle protein [Pseudoalteromonas atlantica T6c] gi|109700272|gb|ABG40192.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pseudoalteromonas atlantica T6c] Length = 458 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 97/312 (31%), Positives = 159/312 (50%), Gaps = 31/312 (9%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + DI RL DD +++ L ++ L+ +D+ + V + +E++ + Sbjct: 2 FENLTERLGKTLKDISGRGRLTDDNIKDTLREVRMALLEADVALPVVKSFIEQVKERAVG 61 Query: 77 KDVS------------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 +VS VQ L V ++ L ++P P V+L+ G+ G GK Sbjct: 62 TEVSKSLNPGQVFIKIVQAELESVMGQANEGLDLAAQP--------PAVVLMAGLQGAGK 113 Query: 125 TTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 TT +GKL++ ++D KV++ + D +R AAI QL+ A + S I + Sbjct: 114 TTSVGKLARYLTDREKKKVLVVSADVYRPAAIKQLETLAIEVGVECFPSTIEQKPIDIVN 173 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 A A+ K DVL++DTAGRLH ++ +M I + + +K P L V+DA TGQ Sbjct: 174 AAVDHAKKKFFDVLLVDTAGRLHIDAEMMGEIKDLHQAIK------PIETLFVVDAMTGQ 227 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 +A + F+ TG+I+TK DG ARGG + + P+ FLG+GE I+ LEPF Sbjct: 228 DAANTAKAFNEALPLTGVILTKTDGDARGGAALSVRHITGKPIKFLGMGEKIDALEPFHP 287 Query: 304 KDFSAVITGCLD 315 + ++ I G D Sbjct: 288 ERVASRILGMGD 299 >gi|94676755|ref|YP_588656.1| signal recognition particle protein [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219905|gb|ABF14064.1| signal recognition particle protein [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 449 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 94/292 (32%), Positives = 153/292 (52%), Gaps = 26/292 (8%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDVS-- 89 I+ + D +RE + L+ +D+ + V Q+ + E L+++ K ++ + + Sbjct: 22 ITEVNIKDTLRE-VRMALLEADVALPVIQEFISRVKESALSQKVNKSLTPGQEFIKIIRW 80 Query: 90 ELIHKM-----LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VM 143 ELI+ M + L+ P P V+L+VG GVGKTT + KL K + + K ++ Sbjct: 81 ELINTMGGQNDTLNLAAP-------PPVVVLIVGQQGVGKTTSVVKLGKYLGERQRKKIL 133 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 + + D +R +AI+QL+ + DF SEI + + A A+ DVL++DTAG Sbjct: 134 VVSTDVYRPSAINQLETLTKNINIDFFPSEIVQKPLNIVHLALTYAKQHFYDVLLVDTAG 193 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 RLH N+ +M I + +K P + V+DA TGQ+A + + F+++ TG+I+ Sbjct: 194 RLHTNNFMMNEIINIHIAIK------PVETIFVVDAMTGQDAAKVAKSFNSMLPLTGIIL 247 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TK+DGT+R G + I P+ FLGVGE I+ LEPF + I G D Sbjct: 248 TKVDGTSRCGAALSISYITGKPIKFLGVGEKIDALEPFYPDRLANRILGMGD 299 >gi|332307017|ref|YP_004434868.1| signal recognition particle protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174346|gb|AEE23600.1| signal recognition particle protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 458 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 95/312 (30%), Positives = 161/312 (51%), Gaps = 31/312 (9%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + DI RL DD +++ L ++ L+ +D+ + V + +E++ + Sbjct: 2 FENLTERLGKTLKDISGRGRLTDDNIKDTLREVRMALLEADVALPVVKSFIEQVKVRAVG 61 Query: 77 KDVS------------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 +VS VQ L V ++ L ++P P V+L+ G+ G GK Sbjct: 62 TEVSKSLNPGQVFIKIVQAELESVMGQANEGLDLAAQP--------PAVVLMAGLQGAGK 113 Query: 125 TTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 TT +GKL++ +++ KV++ + D +R AAI QL+ A + S I + Sbjct: 114 TTSVGKLARYLTEREKKKVLVVSADIYRPAAIKQLETLATEIGVECFPSTIEQKPIDIVN 173 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A + A+ K DVL++DTAGRLH ++ +M I + + +K P L V+DA TGQ Sbjct: 174 DAVEHAKKKFFDVLLVDTAGRLHIDAEMMGEIKDLHQAIK------PIETLFVVDAMTGQ 227 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 +A + F+ TG+I+TK DG ARGG + + P+ FLG+GE ++ LEPF Sbjct: 228 DAANTAKAFNEALPLTGVILTKTDGDARGGAALSVRHITGKPIKFLGMGEKVDALEPFHP 287 Query: 304 KDFSAVITGCLD 315 + ++ I G D Sbjct: 288 ERVASRILGMGD 299 >gi|261820438|ref|YP_003258544.1| signal recognition particle protein [Pectobacterium wasabiae WPP163] gi|261604451|gb|ACX86937.1| signal recognition particle protein [Pectobacterium wasabiae WPP163] Length = 453 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/209 (37%), Positives = 114/209 (54%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT +GKL K + + KV++ + D +R AAI QL+ A + Sbjct: 97 AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKQKKKVLVVSADVYRPAAIKQLETLAQQVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S+ A+ A + A+ K DVL++DTAGRLH + +M I ++ +K Sbjct: 157 VDFFPSDAQEKPLAIVERALQHAKLKFYDVLLVDTAGRLHVDDAMMDEIKQVHAAIK--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA TGQ+A + F+ TG+I+TK+DG ARGG + I P+ Sbjct: 214 ---PVETLFVVDAMTGQDAANTAKAFNEALPLTGVILTKIDGDARGGAALSIRHITGKPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 FLGVGE LEPF ++ I G D Sbjct: 271 KFLGVGEKTEALEPFYPDRVASRILGMGD 299 >gi|300361928|ref|ZP_07058105.1| signal recognition particle protein [Lactobacillus gasseri JV-V03] gi|300354547|gb|EFJ70418.1| signal recognition particle protein [Lactobacillus gasseri JV-V03] Length = 476 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 98/307 (31%), Positives = 157/307 (51%), Gaps = 22/307 (7%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F + S +L++ + ++ IS ++D RE + L+ +D+ V + ++++ + Sbjct: 3 FENLSERLQKALKNLTGKGKISEADINDASRE-IRLALLEADVNFKVVKDFIKKIKKEAL 61 Query: 76 AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K+V Q+++ V + + KM+ + N H P +I++VG+ G GKTT +GK Sbjct: 62 GKEVQESLNPGQQIIKIVDDELTKMMGEEAVSLNKS-QHIPTIIMMVGLQGTGKTTTVGK 120 Query: 131 LSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L+ M + + +L AGD +R AAIDQLK + + V SE D A + ++A Sbjct: 121 LANYLMKNEKARPLLIAGDIYRPAAIDQLKQIGQQLNVP-VYSEDNQDVAEIVNHGLEEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQ 248 K D ++IDTAGRL + LM LKR+ A P + L V+DA TGQ A + Sbjct: 180 DKNKNDYVLIDTAGRLEIDEQLM-------NELKRVTAVAHPDNTLLVVDAMTGQAATQV 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 E F+ TG+I+TK+DG RGG + I +P+ F G GE + DL F ++ Sbjct: 233 AEGFNNDLDLTGIILTKLDGDTRGGAALSIRAVTGLPIIFTGQGEKLTDLSTFHPDRMAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|295097178|emb|CBK86268.1| signal recognition particle subunit FFH/SRP54 (srp54) [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 453 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 116/212 (54%), Gaps = 13/212 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT +GKL K + + KV++ + D +R AAI QL+ A++ Sbjct: 97 AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S++ + A K+A+ K DVL++DTAGRLH + +M I ++ Sbjct: 157 VDFFPSDVAQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQV-------- 208 Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 HA P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I Sbjct: 209 -HASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ FLGVGE LEPF ++ I G D Sbjct: 268 KPIKFLGVGEKTEALEPFHPDRIASRILGMGD 299 >gi|325143074|gb|EGC65423.1| SRP54-type protein, GTPase domain protein [Neisseria meningitidis 961-5945] Length = 303 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 152/286 (53%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + K ++V+ Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNKALT 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + + P V+L+ G+ G GKTT GKL++ + +D KV++ + D +R Sbjct: 84 ELMGRENKTLDLSVAP-PAVVLMAGLQGAGKTTTAGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA GQ+A+ + F+ TG+++TKMDG Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299 >gi|260598989|ref|YP_003211560.1| signal recognition particle protein [Cronobacter turicensis z3032] gi|260218166|emb|CBA33004.1| Signal recognition particle protein [Cronobacter turicensis z3032] Length = 453 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/209 (37%), Positives = 115/209 (55%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT +GKL K + + KV++ + D +R AAI QL+ A + Sbjct: 97 AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S++ + A K+A+ K DVL++DTAGRLH + +M I ++ +K Sbjct: 157 VDFFPSDVAQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I P+ Sbjct: 214 ---PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 FLGVGE LEPF ++ I G D Sbjct: 271 KFLGVGEKTEALEPFHPDRIASRILGMGD 299 >gi|134045071|ref|YP_001096557.1| signal recognition particle protein Srp54 [Methanococcus maripaludis C5] gi|166222335|sp|A4FVX4|SRP54_METM5 RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|132662696|gb|ABO34342.1| signal recognition particle subunit FFH/SRP54 (srp54) [Methanococcus maripaludis C5] Length = 450 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 90/278 (32%), Positives = 150/278 (53%), Gaps = 22/278 (7%) Query: 39 RRLDDGVREELEDLLIRSDIGV--------AVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90 ++L V ++++ LI+SD+ V + +K +EE K +K + +++YD E Sbjct: 24 KKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGLSKKEHIVKIVYD--E 81 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 L+ K+L ++ D S + VIL++G+ G GKTT KL++ + GL+ L A D + Sbjct: 82 LV-KLLGETTQKLELDPSKK-SVILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVY 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAA-LAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 R AA QLK +++ + E + + E ++ KKVDV+IIDTAGR Sbjct: 140 RPAAYQQLKQLSEKINVPLFGDETRTKTPVDITKEGMEKL--KKVDVIIIDTAGRHKEEE 197 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF-HAVAGTTGLIMTKMDG 268 L+A + +M D P+ ++ V+D T GQ A Q + F +V+ +++TK+DG Sbjct: 198 SLLAEMKEM------KDLTNPNEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKLDG 251 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +A+GGG + V P+ F+G GEG+++LE F K F Sbjct: 252 SAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKF 289 >gi|301154660|emb|CBW14122.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Haemophilus parainfluenzae T3T1] Length = 463 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 102/305 (33%), Positives = 157/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72 F + S +L + + +I RL +D ++E L ++ L+ +D+ + V + K+ E L Sbjct: 2 FENLSDRLSKTLRNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61 Query: 73 KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K ++ Q L V + K + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KV++ + D +R AAI QL+ A DF S++ +A A A+ Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQKPVEIAKAALADAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVLI+DTAGRLH +S +M I ++ L P L +DA TGQ+A + Sbjct: 181 LKFYDVLIVDTAGRLHVDSEMMDEIKQVHATLN------PIETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|116621691|ref|YP_823847.1| signal recognition particle subunit FFH/SRP54 (srp54) [Candidatus Solibacter usitatus Ellin6076] gi|116224853|gb|ABJ83562.1| signal recognition particle subunit FFH/SRP54 (srp54) [Candidatus Solibacter usitatus Ellin6076] Length = 455 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 91/272 (33%), Positives = 144/272 (52%), Gaps = 14/272 (5%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 +S+ ++ +RE + L+ +D+ V ++++E + K ++V Q+V+ V E Sbjct: 22 LSAENMETALRE-IRMALLEADVNFKVVKQLIENIKQKAVGEEVLNALSPSQQVIKIVHE 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + K+L + + P V ++VG+ G GKTT GKL++ +S G M+ + D + Sbjct: 81 ELIKILGSHESKLRY-ANDPPSVFMIVGLQGSGKTTSTGKLARWLSKNGHAPMVVSVDVY 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAA-LAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 R AA +QLK+ A G A LA A ++A DVL++DTAGRLH + Sbjct: 140 RPAAREQLKVVARDVKQPIYEGAPGETAPLDLARSARREATNSGRDVLLVDTAGRLHIDD 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 LM + ++ L P +L V DA TGQ+A++ + FH G TG+I+TKMDG Sbjct: 200 DLMVELQQLKEQLN------PVEILFVADAMTGQDAVKSADEFHKRLGITGVILTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 ARGG + I P+ F+GVGE ++ LE F Sbjct: 254 ARGGAALSIRSVTGQPLKFVGVGEKLDALEAF 285 >gi|332157931|ref|YP_004423210.1| signal recognition particle protein Srp54 [Pyrococcus sp. NA2] gi|331033394|gb|AEC51206.1| signal recognition particle protein Srp54 [Pyrococcus sp. NA2] Length = 443 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/279 (31%), Positives = 140/279 (50%), Gaps = 16/279 (5%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEEL----LTKRYAKDVSV-QRVLYDVSELIHKML 96 V+E + D+ LI++D+ V + + E+ L ++ +S + ++ V E + K L Sbjct: 28 VKEVVRDIQRALIQADVNVRLVLNLTREIQRRALEEKPPAGISRKEHIIKIVYEELTKFL 87 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 ++P + +P ++L+VGV G GKTT + KL++ G KV + DT+R A Sbjct: 88 GTEARPI--EIREKPTILLMVGVQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYH 145 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QLK D + DA LA E K + K VD++I+DTAGR L+ + Sbjct: 146 QLKQLLDPYHIEVFGDPQEKDAIKLAREGVKHFKEKGVDLIIVDTAGRHKEEKNLIEEMR 205 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 ++ + PH V+ V+D T GQ A Q F +I+TK+D +A+GGG + Sbjct: 206 QISEAIN------PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGAL 259 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 V P+ F+GVGE I+D+EPF F + + G D Sbjct: 260 SAVAATGAPIKFIGVGEKIDDIEPFDPARFVSRLLGLGD 298 >gi|171676350|ref|XP_001903128.1| hypothetical protein [Podospora anserina S mat+] gi|170936241|emb|CAP60900.1| unnamed protein product [Podospora anserina S mat+] Length = 516 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 151/302 (50%), Gaps = 24/302 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-- 80 ++ +TD+ + LD D + +++ L+ +D+ V + ++ +++ KD+ Sbjct: 9 RINAAVTDLTRAPNLDEKAFDSMLKQICSALLEADVNVRLVGRLRKDIKAAVNFKDLPPA 68 Query: 81 ------VQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 +Q+ ++D + +L+ P ++PF + +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFDHLVDLVD----PHAEPFKPK-KGKSNVIMFVGLQGAGKTTTCTKLAR 123 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 G + L DTFR+ A DQLK A + + S +D A +A E + + ++ Sbjct: 124 HYQSRGFRACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAVVAKEGVDKFKKER 183 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +V+I+DT+GR S L + + +K P + VLD++ GQ A Q F Sbjct: 184 FEVIIVDTSGRHRQESALFQEMMDIQNAIK------PDETIMVLDSSIGQQAEGQAMAFK 237 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 A +I+TK DG A GGG I V + P+ F+G GE + DLE FV K+F + + G Sbjct: 238 EAADFGAIIITKTDGHAAGGGAISAVAATRTPIVFIGTGEHMLDLERFVPKNFISKLLGM 297 Query: 314 LD 315 D Sbjct: 298 GD 299 >gi|297569147|ref|YP_003690491.1| signal recognition particle protein [Desulfurivibrio alkaliphilus AHT2] gi|296925062|gb|ADH85872.1| signal recognition particle protein [Desulfurivibrio alkaliphilus AHT2] Length = 455 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 156/304 (51%), Gaps = 22/304 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L++ ++ L ++ +RE + ++ L+ +D+ V + + + K Sbjct: 2 FDSLSQRLQDVFKNLRGHGTLTEENIREAMREVRLALLEADVNFRVVKDFIASVTEKAVG 61 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVI 128 ++V Q+V+ +++H+ L+ L + + +P VI++VG+ G GKTT Sbjct: 62 REVLKSLAPGQQVI----KIVHQELVELLGGSSVELELGGRKPVVIMMVGLQGSGKTTTS 117 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL++++ G K L D +R AAIDQL + A S D + +A + Sbjct: 118 GKLARRLQGEGKKPYLVPADVYRPAAIDQLTVLAGELEVPVHPSRTDQDPVDICRQAVAR 177 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A D+L++DTAGRLH + LM + ++ L+ P +L V DA TGQ+A+ Sbjct: 178 AGELGCDILLVDTAGRLHVDQELMEELSRIKTALQ------PAEILLVADAMTGQDAVAV 231 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + FH TG+++TK+DG ARGG + I P+ F+G+GEG++ LE F ++ Sbjct: 232 ADKFHQDLSLTGVVLTKLDGDARGGAALSIKKATGRPIKFVGLGEGLDALEVFHPDRMAS 291 Query: 309 VITG 312 I G Sbjct: 292 RILG 295 >gi|50306973|ref|XP_453464.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49642598|emb|CAH00560.1| KLLA0D09020p [Kluyveromyces lactis] Length = 530 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 90/307 (29%), Positives = 150/307 (48%), Gaps = 28/307 (9%) Query: 27 KLKEGITDIISSRRLD-----DGVREELEDLLIRSDIGVAVAQKIVEEL----------- 70 ++ +T+ IS+ + D + +E+ L+ +D+ + + ++ E + Sbjct: 9 RINNAVTNAISNEQTDYETTVQSMLKEIATALLENDVNIRLVSRLRENIKNTLLSNANVN 68 Query: 71 --LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 T K + +Q+ ++D EL + + ++ PF + +VI+ VG+ G GKTT Sbjct: 69 AKFTNAQTKKL-IQKTVFD--ELCNLVDCEVTSPFQPK-KRQSNVIMFVGLQGSGKTTSC 124 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+ S G KV L DTFR+ A DQLK A + F S + +A + + Sbjct: 125 TKLAVYYSKRGYKVGLVCADTFRAGAFDQLKQNAIKAKIPFYGSYTEPNPVKVAKDGVDK 184 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 + +K +++I+DT+GR L + ++ + +K P + VLDA+ GQ A Q Sbjct: 185 FKKEKFEIIIVDTSGRHQQEDSLFQEMVEISQAVK------PKQTIMVLDASIGQAAEHQ 238 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F A +I+TKMDG ARGGG I V + P+ F+G GE I+D E F K F + Sbjct: 239 SKAFKESADFGSIILTKMDGHARGGGAISAVASTNTPIIFIGTGEHIHDFEKFSPKSFVS 298 Query: 309 VITGCLD 315 + G D Sbjct: 299 KLLGIGD 305 >gi|21227369|ref|NP_633291.1| signal recognition particle protein Srp54 [Methanosarcina mazei Go1] gi|23822172|sp|Q8PXF3|SRP54_METMA RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|20905728|gb|AAM30963.1| signal recognition particle subunit FFH/SRP54 [Methanosarcina mazei Go1] Length = 443 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 97/301 (32%), Positives = 153/301 (50%), Gaps = 30/301 (9%) Query: 28 LKEGITDIISSRRLDD-GVREELEDL---LIRSDIGV----AVAQKIVEELLTKRYAKDV 79 L+ + +I + R+D+ V E ++D+ L+++D+ V ++Q+I E + + + Sbjct: 10 LQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERAMKEDPPAGM 69 Query: 80 S----VQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 + V R++Y ++ E+I K D +P I++VG+ G GKTT KL++ Sbjct: 70 NPREHVIRIVYQELMEIIGK---------GADIQLKPQTIMMVGLQGSGKTTSAAKLARY 120 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 GLK + A DTFR A QLK +++ + F E DA + K + K Sbjct: 121 FQRKGLKAGVVAADTFRPGAYHQLKTLSEKLNVGFYGEEGNPDAVEITIHGLKALE--KY 178 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D+ I+DTAGR + L+ + ++ V K P VLDA GQ A +Q F+ Sbjct: 179 DIKIVDTAGRHALEADLIEEMERIHAVAK------PDHKFMVLDAGIGQQASQQAHAFND 232 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 G TG+I+TK+DGTA+GGG + V K P+ F+GVGE D E F A F + + G Sbjct: 233 SVGITGVIITKLDGTAKGGGALSAVSETKAPIAFIGVGETPEDFEKFEADRFISRLLGMG 292 Query: 315 D 315 D Sbjct: 293 D 293 >gi|300114672|ref|YP_003761247.1| signal recognition particle protein [Nitrosococcus watsonii C-113] gi|299540609|gb|ADJ28926.1| signal recognition particle protein [Nitrosococcus watsonii C-113] Length = 452 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 116/207 (56%), Gaps = 9/207 (4%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT + KL++ + + K V++ + D +R AAI QL+ A F Sbjct: 100 PAVILMAGLQGSGKTTTVAKLARWLKEQQKKSVLVTSADVYRPAAIQQLETLASEVGVAF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S+ D A+A A +QA+ + +DVLIIDTAGRLH + ++MA I KRL A Sbjct: 160 YPSKPTQDPVAIARGAIQQARTQVLDVLIIDTAGRLHVDDLMMAEI-------KRLHEAA 212 Query: 230 -PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P L V+D+ TGQ+A + F+ TG+I+TK+DG ARGG + I P+ F Sbjct: 213 EPVETLFVVDSMTGQDAANTAQAFNDSLALTGVILTKVDGDARGGAALSIRQITGKPIKF 272 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 LGVGE LE F ++ I G D Sbjct: 273 LGVGEKTAALELFHPDRLASRILGMGD 299 >gi|126654295|ref|ZP_01726072.1| signal recognition particle-like (SRP) component [Bacillus sp. B14905] gi|126589259|gb|EAZ83420.1| signal recognition particle-like (SRP) component [Bacillus sp. B14905] Length = 438 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 84/237 (35%), Positives = 134/237 (56%), Gaps = 12/237 (5%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GL 140 Q+V+ V + + +++ P ++ + P VI++VG+ G GKTT GKL+ + Sbjct: 73 QQVIKIVQDELTELMGGEQSPIKFN-TKPPTVIMMVGLQGAGKTTTSGKLANVLRKKYNR 131 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLI 198 K +L A D +R AA+ QL+ + S +G+D + +A +A ++A+ + DV+I Sbjct: 132 KPLLVAADVYRPAAVQQLETLGKQLSLPVFS--LGTDISPVEIARQAIEKAKEEHHDVVI 189 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 IDTAGRLH + LM + K IR LK P V V+DA TGQ+A+ E F+ G Sbjct: 190 IDTAGRLHIDEDLMQEL-KDIRALKE-----PDEVFLVVDAMTGQDAVNVAESFNEAIGI 243 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TG+++TK+DG RGG + I + P+ F+G+GE ++ LEPF + ++ I G D Sbjct: 244 TGVVLTKLDGDTRGGAALSIRSVTQKPIKFVGMGEKMDALEPFHPERMASRILGMGD 300 >gi|73668456|ref|YP_304471.1| signal recognition particle protein Srp54 [Methanosarcina barkeri str. Fusaro] gi|121731303|sp|Q46E01|SRP54_METBF RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|72395618|gb|AAZ69891.1| signal recognition particle subunit FFH/SRP54 (srp54) [Methanosarcina barkeri str. Fusaro] Length = 443 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 97/301 (32%), Positives = 153/301 (50%), Gaps = 30/301 (9%) Query: 28 LKEGITDIISSRRLDD-GVREELEDL---LIRSDIGV----AVAQKIVEELLTKRYAKDV 79 L+ + +I + R+D+ V E ++D+ L+++D+ V ++Q+I E + + + Sbjct: 10 LQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERAMKEAPPAGM 69 Query: 80 S----VQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 + V R++Y ++ E+I K + +P +I++VG+ G GKTT KL++ Sbjct: 70 NPREHVIRIVYQELMEIIGK---------GAEIQLKPQIIMMVGLQGSGKTTSTAKLARY 120 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 GLK + A DTFR A QLK ++ + F E DA + K + K Sbjct: 121 FQRKGLKAGVVAADTFRPGAYHQLKTLCEKLNVAFYGEENNPDAVEITRNGLKALE--KY 178 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 DV I+DTAGR + L+ + ++ V K P VLDA GQ A +Q F+ Sbjct: 179 DVKIVDTAGRHALEADLIEEMEQINAVAK------PDHKFMVLDAGIGQQASQQAHAFND 232 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 G TG+I+TK+DGTA+GGG + V K P+ F+GVGE D E F A F + + G Sbjct: 233 SVGITGVIITKLDGTAKGGGALSAVSETKAPIAFIGVGETPEDFEKFEADRFISRLLGMG 292 Query: 315 D 315 D Sbjct: 293 D 293 >gi|260550989|ref|ZP_05825194.1| signal recognition particle protein [Acinetobacter sp. RUH2624] gi|260405937|gb|EEW99424.1| signal recognition particle protein [Acinetobacter sp. RUH2624] Length = 469 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 158/295 (53%), Gaps = 25/295 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + ++ S +L +D +++ L ++ L+ +D+ + V ++ + ++ + Sbjct: 2 FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61 Query: 77 KDVSVQ--------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTV 127 ++V Q +++YD + KM+ ++ D S +P V+ L+ G+ G GKTT Sbjct: 62 QEVMTQLSPGQAFVKIVYDE---LTKMMGEANE--TLDLSAKPPVVVLLAGLQGAGKTTT 116 Query: 128 IGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL++ + + KVM + D +R AAI QL+ + A F+ S+ + A Sbjct: 117 AAKLARFLKERQKKKVMTVSADVYRPAAIKQLETVSTEVGAGFIPSDPSEKPIDIVNRAI 176 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 +QA+ + DVLI+DTAGRLH + +M I ++ +K P L V+DA TGQ+A Sbjct: 177 EQAKIQFADVLIVDTAGRLHVDEDMMDEIKELHAAVK------PIETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F+ TG+I+TK DG ARGG + + P+ FLG+GE ++ LEPF Sbjct: 231 NTAKAFNDALALTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPF 285 >gi|145297735|ref|YP_001140576.1| signal recognition particle protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142850507|gb|ABO88828.1| signal recognition particle protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 459 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 95/307 (30%), Positives = 158/307 (51%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIV----EELLT 72 F + + +L + ++ RL ++ +++ L ++ L+ +D+ + V + V E + Sbjct: 2 FENLTERLSRTLRNVSGRGRLTEENIKDTLREVRMALLEADVALPVVRDFVARVKERAVG 61 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIG 129 + AK +S + +++H L+ + N + P +IL+ G+ G GKTT +G Sbjct: 62 QEVAKSLSPGQAFI---KIVHGELVSVMGEANEQLNLAAQPPVIILMAGLQGAGKTTTVG 118 Query: 130 KLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+K + + + KV++ + D +R AAI QL+ A DF S+ +A A Q Sbjct: 119 KLAKLLKERSKKKVLVVSADVYRPAAIKQLETLASDVGVDFFPSDASQKPVDIATAAIDQ 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DV+I+DTAGRLH +S +M I + +K P L V+DA TGQ+A Sbjct: 179 ARKKFYDVVIVDTAGRLHVDSDMMDEIIHLHATIK------PVETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F+ TG+I+TK DG ARGG + + PV F+G+GE + LEPF ++ Sbjct: 233 AKAFNEALPLTGVILTKADGDARGGAALSVRHITGKPVKFIGMGEKTDALEPFHPDRLAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|239826589|ref|YP_002949213.1| signal recognition particle protein [Geobacillus sp. WCH70] gi|239806882|gb|ACS23947.1| signal recognition particle protein [Geobacillus sp. WCH70] Length = 446 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 114/209 (54%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 S P VI++VG+ G GKTT GKL+ + K +LAA D +R AAI QL+ + + Sbjct: 98 SRPPTVIMMVGLQGAGKTTTTGKLANLLRKRYNRKPLLAAADIYRPAAIKQLETLGKQLN 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 +A +A ++A+ + D ++IDTAGRLH + LM + +M V K Sbjct: 158 MPVFSLGDQVSPVEIAKQAIEKAKEEHYDYVLIDTAGRLHIDETLMDELKQMKEVAK--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P + V+DA TGQ+A+ + FH G TG+I+TK+DG RGG + I P+ Sbjct: 215 ---PDEIFLVVDAMTGQDAVNVAQSFHEQLGITGVILTKLDGDTRGGAALSIRAVTNTPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ LEPF + ++ I G D Sbjct: 272 KFVGMGEKLDALEPFHPERMASRILGMGD 300 >gi|229549880|ref|ZP_04438605.1| signal recognition particle protein [Enterococcus faecalis ATCC 29200] gi|255972664|ref|ZP_05423250.1| signal recognition particle protein [Enterococcus faecalis T1] gi|256959109|ref|ZP_05563280.1| signal recognition particle protein [Enterococcus faecalis DS5] gi|257079141|ref|ZP_05573502.1| signal recognition particle protein [Enterococcus faecalis JH1] gi|294781588|ref|ZP_06746924.1| signal recognition particle protein [Enterococcus faecalis PC1.1] gi|307269511|ref|ZP_07550850.1| signal recognition particle protein [Enterococcus faecalis TX4248] gi|312951630|ref|ZP_07770525.1| signal recognition particle protein [Enterococcus faecalis TX0102] gi|229304953|gb|EEN70949.1| signal recognition particle protein [Enterococcus faecalis ATCC 29200] gi|255963682|gb|EET96158.1| signal recognition particle protein [Enterococcus faecalis T1] gi|256949605|gb|EEU66237.1| signal recognition particle protein [Enterococcus faecalis DS5] gi|256987171|gb|EEU74473.1| signal recognition particle protein [Enterococcus faecalis JH1] gi|294451284|gb|EFG19750.1| signal recognition particle protein [Enterococcus faecalis PC1.1] gi|306514131|gb|EFM82707.1| signal recognition particle protein [Enterococcus faecalis TX4248] gi|310630347|gb|EFQ13630.1| signal recognition particle protein [Enterococcus faecalis TX0102] gi|315037112|gb|EFT49044.1| signal recognition particle protein [Enterococcus faecalis TX0027] gi|315158208|gb|EFU02225.1| signal recognition particle protein [Enterococcus faecalis TX0312] gi|315168902|gb|EFU12919.1| signal recognition particle protein [Enterococcus faecalis TX1341] gi|323480859|gb|ADX80298.1| signal recognition particle protein [Enterococcus faecalis 62] gi|329571907|gb|EGG53585.1| signal recognition particle protein [Enterococcus faecalis TX1467] Length = 472 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 98/309 (31%), Positives = 163/309 (52%), Gaps = 23/309 (7%) Query: 20 GFASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75 F S + +L++ ++ I ++ + V+E + ++ L+ +D+ + V + + + + Sbjct: 2 AFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERAV 61 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129 +V Q+++ V E + K L S+ + S + P VI++ G+ G GKTT G Sbjct: 62 GVEVLESLSPAQQIVKIVDEELTKTLG--SETVELNKSPKIPTVIMMTGLQGAGKTTFTG 119 Query: 130 KLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAF 186 KL+K M + +L AGD +R AAIDQLK+ + + ++G+DA + + Sbjct: 120 KLAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQL--EVPVFDMGTDANPVEIVRQGL 177 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A+ KK D ++IDTAGRLH + LM + K I+ L P+ +L V+DA TGQ+A+ Sbjct: 178 ALAKEKKNDYVLIDTAGRLHIDEALMDEL-KQIKELTN-----PNEILLVVDAMTGQDAV 231 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ G TG+++TKMDG RGG + I P+ F+G GE + DLE F Sbjct: 232 NVADSFNEQLGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRM 291 Query: 307 SAVITGCLD 315 S+ I G D Sbjct: 292 SSRILGMGD 300 >gi|88604250|ref|YP_504428.1| signal recognition particle-docking protein FtsY [Methanospirillum hungatei JF-1] gi|88189712|gb|ABD42709.1| signal recognition particle-docking protein FtsY [Methanospirillum hungatei JF-1] Length = 353 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/273 (31%), Positives = 148/273 (54%), Gaps = 13/273 (4%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQ----KIVEELLTKRYAKDVSVQRVLYD-VS 89 IIS + ++D + +ELE L+ SD+ +V + +I +L + SV ++ + +S Sbjct: 75 IISEKDVND-ILDELEMGLLESDVAFSVTEAILARIKADLSGSKRKIGTSVDSIVRNALS 133 Query: 90 ELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 + + +L + H RP IL GVNG GKTT I K+++ + G V+L AGD Sbjct: 134 DALLGVLGEGVDICAFIREHERPVKILFTGVNGTGKTTSIAKVTRFLQKNGFSVVLGAGD 193 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+ AI+Q+ + +R + + GSD A+ ++ + A+A K+DV++ DTAGR HN Sbjct: 194 TFRAGAIEQIDVHGERLGVKVIQHQEGSDPTAVLFDTVEYARAHKIDVVLGDTAGRFHNR 253 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 + LM + K+ RV+ P ++ V +A G +A+ + E F G +++TK+D Sbjct: 254 ANLMNQLAKIRRVIN------PDLIVYVDEAVAGNDAVIRAEEFAKSVGMDAIMLTKVDM 307 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +GG I + P+ F+G G+G +D+ F Sbjct: 308 DPKGGAAISVAYAVGKPLLFIGTGQGYDDVMAF 340 >gi|148825617|ref|YP_001290370.1| Signal recognition particle protein [Haemophilus influenzae PittEE] gi|229847076|ref|ZP_04467182.1| Signal recognition particle protein [Haemophilus influenzae 7P49H1] gi|148715777|gb|ABQ97987.1| Signal recognition particle protein [Haemophilus influenzae PittEE] gi|229810160|gb|EEP45880.1| Signal recognition particle protein [Haemophilus influenzae 7P49H1] gi|309972762|gb|ADO95963.1| 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA [Haemophilus influenzae R2846] Length = 459 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 101/305 (33%), Positives = 158/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72 F + S +L + + +I RL +D ++E L ++ L+ +D+ + V + K+ E L Sbjct: 2 FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61 Query: 73 KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K ++ Q L V + K + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KV++ + D +R AAI QL+ A DF S++ + +A A A+ Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKAALADAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVLI+DTAGRLH ++ +M I ++ L P L +DA TGQ+A + Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|312903448|ref|ZP_07762628.1| signal recognition particle protein [Enterococcus faecalis TX0635] gi|310633324|gb|EFQ16607.1| signal recognition particle protein [Enterococcus faecalis TX0635] Length = 472 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 98/309 (31%), Positives = 163/309 (52%), Gaps = 23/309 (7%) Query: 20 GFASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75 F S + +L++ ++ I ++ + V+E + ++ L+ +D+ + V + + + + Sbjct: 2 AFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERAV 61 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129 +V Q+++ V E + K L S+ + S + P VI++ G+ G GKTT G Sbjct: 62 GVEVLESLSPAQQIVKIVDEELTKTLG--SETVELNKSPKIPTVIMMTGLQGAGKTTFTG 119 Query: 130 KLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAF 186 KL+K M + +L AGD +R AAIDQLK+ + + ++G+DA + + Sbjct: 120 KLAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQL--EVPVFDMGTDANPVEIVRQGL 177 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A+ KK D ++IDTAGRLH + LM + K I+ L P+ +L V+DA TGQ+A+ Sbjct: 178 ALAKEKKNDYVLIDTAGRLHIDEALMDEL-KQIKELAN-----PNEILLVVDAMTGQDAV 231 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ G TG+++TKMDG RGG + I P+ F+G GE + DLE F Sbjct: 232 NVADSFNEQLGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRM 291 Query: 307 SAVITGCLD 315 S+ I G D Sbjct: 292 SSRILGMGD 300 >gi|315126107|ref|YP_004068110.1| 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA [Pseudoalteromonas sp. SM9913] gi|315014621|gb|ADT67959.1| 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA [Pseudoalteromonas sp. SM9913] Length = 459 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 94/307 (30%), Positives = 159/307 (51%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + +L + + +I RL +D +++ L ++ + +D+ + V ++ V+++ K A Sbjct: 2 FENLQERLGKTLKNISGRGRLTEDNIKDTLREVRMAFLEADVALPVVREFVKQV--KERA 59 Query: 77 KDVSVQRVLYD-------VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L V E + K + ++ + + + P V+++ G+ G GKTT +G Sbjct: 60 VGVEVTKSLSPGQVFIKIVREELEKAMGEANEELSLN-AQPPAVVMMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+K + + K V++ + D +R AAI QL+ A + +F S+I +A A Sbjct: 119 KLAKFLKERKKKSVLVVSADVYRPAAIKQLETLATEVNVEFFPSDISQKPVDIATAAISH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K +DV+++DTAGRLH +S +M I + + P L V+DA TGQ+A Sbjct: 179 AKKKFIDVVLVDTAGRLHVDSDMMDEIKALHHAIN------PIETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+I+TK DG ARGG + I P+ F+GVGE + LEPF ++ Sbjct: 233 AKAFDEALPLTGVILTKTDGDARGGAALSIRHITGKPIKFMGVGERTDALEPFHPDRIAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|304399182|ref|ZP_07381049.1| signal recognition particle protein [Pantoea sp. aB] gi|304353236|gb|EFM17616.1| signal recognition particle protein [Pantoea sp. aB] Length = 453 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/306 (30%), Positives = 159/306 (51%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL ++ ++E L ++ L+ +D+ + V + + + Sbjct: 2 FDNLTDRLSQTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKESAVG 61 Query: 77 KDVSVQRVLYDVSELI----HKMLMPLSKPFN-WDFSHRPH-VILVVGVNGVGKTTVIGK 130 DV+ + L E I ++++ + N D + +P V+L+ G+ G GKTT + K Sbjct: 62 HDVN--KSLTPGQEFIKIVRNELVAAMGAENNALDLAAQPPAVVLMAGLQGAGKTTSVAK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + KV++ + D +R AAI QL+ A + DF S++ + A ++A Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVGVDFCPSDLSQKPVDIVNNALREA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVL++DTAGRLH + +M I ++ +K P L V+DA TGQ+A Sbjct: 180 RLKFYDVLLVDTAGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+I+TK+DG ARGG + I P+ F+GVGE LEPF + ++ Sbjct: 234 KAFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFMGVGEKTEALEPFYPERIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|81300580|ref|YP_400788.1| signal recognition particle subunit FFH/SRP54 (srp54) [Synechococcus elongatus PCC 7942] gi|2126515|pir||S68160 probable RNA binding protein ffh - Synechococcus sp. (strain PCC 7942) gi|81169461|gb|ABB57801.1| signal recognition particle subunit FFH/SRP54 (srp54) [Synechococcus elongatus PCC 7942] Length = 496 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 92/295 (31%), Positives = 151/295 (51%), Gaps = 29/295 (9%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA--------KDVSVQRVL 85 D IS + + ++E + L+ +D+ + V ++ + ++ K D +V+ Sbjct: 31 DKISESNVQEALKE-VRRALLEADVNLGVVKEFIAQVQEKAVGTQVISGIRPDQQFIKVV 89 Query: 86 YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 YD EL+ M +PL++ + P VIL+ G+ G GKTT KL+ + G Sbjct: 90 YD--ELVQVMGETHVPLAQA-----AKAPTVILMAGLQGAGKTTATAKLALHLRKEGRST 142 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIID 200 +L A D +R AAIDQL + D E+GSDA +A + ++A+ + +D +I+D Sbjct: 143 LLVATDVYRPAAIDQLITLGKQI--DVPVFELGSDANPVEIARQGVEKARQEGIDTVIVD 200 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL ++ +M + ++ + APH VL V+D+ GQ A FH G TG Sbjct: 201 TAGRLQIDTEMMEELAQVKEAI------APHEVLLVVDSMIGQEAASLTRSFHERIGITG 254 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I+TK+DG +RGG + I P+ F+G+GE + L+PF + ++ I G D Sbjct: 255 AILTKLDGDSRGGAALSIRRVSGQPIKFVGLGEKVEALQPFHPERMASRILGMGD 309 >gi|229545688|ref|ZP_04434413.1| signal recognition particle protein [Enterococcus faecalis TX1322] gi|255975716|ref|ZP_05426302.1| signal recognition particle protein [Enterococcus faecalis T2] gi|256619193|ref|ZP_05476039.1| signal recognition particle protein [Enterococcus faecalis ATCC 4200] gi|256853255|ref|ZP_05558625.1| signal recognition particle protein [Enterococcus faecalis T8] gi|257082423|ref|ZP_05576784.1| signal recognition particle protein [Enterococcus faecalis E1Sol] gi|257085055|ref|ZP_05579416.1| signal recognition particle protein [Enterococcus faecalis Fly1] gi|257090014|ref|ZP_05584375.1| signal recognition particle protein [Enterococcus faecalis CH188] gi|257416220|ref|ZP_05593214.1| signal recognition particle protein [Enterococcus faecalis AR01/DG] gi|257422483|ref|ZP_05599473.1| signal recognition particle protein [Enterococcus faecalis X98] gi|300860172|ref|ZP_07106259.1| signal recognition particle protein [Enterococcus faecalis TUSoD Ef11] gi|307275840|ref|ZP_07556979.1| signal recognition particle protein [Enterococcus faecalis TX2134] gi|307289238|ref|ZP_07569194.1| signal recognition particle protein [Enterococcus faecalis TX0109] gi|307291863|ref|ZP_07571734.1| signal recognition particle protein [Enterococcus faecalis TX0411] gi|312901896|ref|ZP_07761161.1| signal recognition particle protein [Enterococcus faecalis TX0470] gi|229309138|gb|EEN75125.1| signal recognition particle protein [Enterococcus faecalis TX1322] gi|255968588|gb|EET99210.1| signal recognition particle protein [Enterococcus faecalis T2] gi|256598720|gb|EEU17896.1| signal recognition particle protein [Enterococcus faecalis ATCC 4200] gi|256711714|gb|EEU26752.1| signal recognition particle protein [Enterococcus faecalis T8] gi|256990453|gb|EEU77755.1| signal recognition particle protein [Enterococcus faecalis E1Sol] gi|256993085|gb|EEU80387.1| signal recognition particle protein [Enterococcus faecalis Fly1] gi|256998826|gb|EEU85346.1| signal recognition particle protein [Enterococcus faecalis CH188] gi|257158048|gb|EEU88008.1| signal recognition particle protein [Enterococcus faecalis ARO1/DG] gi|257164307|gb|EEU94267.1| signal recognition particle protein [Enterococcus faecalis X98] gi|295113085|emb|CBL31722.1| signal recognition particle subunit FFH/SRP54 (srp54) [Enterococcus sp. 7L76] gi|300849211|gb|EFK76961.1| signal recognition particle protein [Enterococcus faecalis TUSoD Ef11] gi|306497129|gb|EFM66675.1| signal recognition particle protein [Enterococcus faecalis TX0411] gi|306499947|gb|EFM69308.1| signal recognition particle protein [Enterococcus faecalis TX0109] gi|306507532|gb|EFM76663.1| signal recognition particle protein [Enterococcus faecalis TX2134] gi|311291089|gb|EFQ69645.1| signal recognition particle protein [Enterococcus faecalis TX0470] gi|315029568|gb|EFT41500.1| signal recognition particle protein [Enterococcus faecalis TX4000] gi|315032040|gb|EFT43972.1| signal recognition particle protein [Enterococcus faecalis TX0017] gi|315147394|gb|EFT91410.1| signal recognition particle protein [Enterococcus faecalis TX4244] gi|315150780|gb|EFT94796.1| signal recognition particle protein [Enterococcus faecalis TX0012] gi|315156150|gb|EFU00167.1| signal recognition particle protein [Enterococcus faecalis TX0043] gi|315163852|gb|EFU07869.1| signal recognition particle protein [Enterococcus faecalis TX1302] gi|315169591|gb|EFU13608.1| signal recognition particle protein [Enterococcus faecalis TX1342] gi|315172461|gb|EFU16478.1| signal recognition particle protein [Enterococcus faecalis TX1346] gi|315577856|gb|EFU90047.1| signal recognition particle protein [Enterococcus faecalis TX0630] Length = 472 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 98/309 (31%), Positives = 163/309 (52%), Gaps = 23/309 (7%) Query: 20 GFASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75 F S + +L++ ++ I ++ + V+E + ++ L+ +D+ + V + + + + Sbjct: 2 AFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERAV 61 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129 +V Q+++ V E + K L S+ + S + P VI++ G+ G GKTT G Sbjct: 62 GVEVLESLSPAQQIVKIVDEELTKTLG--SETVELNKSPKIPTVIMMTGLQGAGKTTFTG 119 Query: 130 KLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAF 186 KL+K M + +L AGD +R AAIDQLK+ + + ++G+DA + + Sbjct: 120 KLAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQL--EVPVFDMGTDANPVEIVRQGL 177 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A+ KK D ++IDTAGRLH + LM + K I+ L P+ +L V+DA TGQ+A+ Sbjct: 178 ALAKEKKNDYVLIDTAGRLHIDEALMDEL-KQIKELAN-----PNEILLVVDAMTGQDAV 231 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ G TG+++TKMDG RGG + I P+ F+G GE + DLE F Sbjct: 232 NVADSFNEQLGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRM 291 Query: 307 SAVITGCLD 315 S+ I G D Sbjct: 292 SSRILGMGD 300 >gi|2500884|sp|Q55311|SRP54_SYNE7 RecName: Full=Signal sequence-binding protein gi|1279743|emb|CAA63054.1| signal sequence binding protein [Synechococcus elongatus PCC 7942] Length = 485 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 92/295 (31%), Positives = 151/295 (51%), Gaps = 29/295 (9%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA--------KDVSVQRVL 85 D IS + + ++E + L+ +D+ + V ++ + ++ K D +V+ Sbjct: 20 DKISESNVQEALKE-VRRALLEADVNLGVVKEFIAQVQEKAVGTQVISGIRPDQQFIKVV 78 Query: 86 YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 YD EL+ M +PL++ + P VIL+ G+ G GKTT KL+ + G Sbjct: 79 YD--ELVQVMGETHVPLAQA-----AKAPTVILMAGLQGAGKTTATAKLALHLRKEGRST 131 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIID 200 +L A D +R AAIDQL + D E+GSDA +A + ++A+ + +D +I+D Sbjct: 132 LLVATDVYRPAAIDQLITLGKQI--DVPVFELGSDANPVEIARQGVEKARQEGIDTVIVD 189 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL ++ +M + ++ + APH VL V+D+ GQ A FH G TG Sbjct: 190 TAGRLQIDTEMMEELAQVKEAI------APHEVLLVVDSMIGQEAASLTRSFHERIGITG 243 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I+TK+DG +RGG + I P+ F+G+GE + L+PF + ++ I G D Sbjct: 244 AILTKLDGDSRGGAALSIRRVSGQPIKFVGLGEKVEALQPFHPERMASRILGMGD 298 >gi|325267254|ref|ZP_08133917.1| signal recognition particle protein [Kingella denitrificans ATCC 33394] gi|324981315|gb|EGC16964.1| signal recognition particle protein [Kingella denitrificans ATCC 33394] Length = 455 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 90/292 (30%), Positives = 155/292 (53%), Gaps = 23/292 (7%) Query: 37 SSRRLDDGVREELEDL---LIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYD-V 88 +++ +D ++E L ++ L+ +D+ + + + V E L + +A ++ + + V Sbjct: 19 NAKLTEDNIKEALREVRLALLEADVSLPIVKDFVNRVKERALGQEFADHLTPDQAFFGIV 78 Query: 89 SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK--VMLAA 146 +E + +++ + N S P ++L+ G+ G GKTT +GKLSK + D K ++L + Sbjct: 79 NEELTELMGSENSTLNLA-SAPPAIVLMAGLQGAGKTTTVGKLSKLLKDQDKKKKILLVS 137 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 D +R AAI+QL++ A++ + DF S+ +A A A+ DVL++DTAGRL Sbjct: 138 ADVYRPAAIEQLRLLAEQVNVDFFPSDTSQKPVEIALAAQDYAKKHFYDVLMVDTAGRLA 197 Query: 207 NNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 + +M I + HA P L V+DA GQ+A+ + F+ TG+I+ Sbjct: 198 IDEEMMNEIKAI---------HAAVHPVETLFVVDAMLGQDAVNTAQAFNEALPLTGVIL 248 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TKMDG +RGG + + P+ F+G+GE IN LEPF ++ I G D Sbjct: 249 TKMDGDSRGGAALSVRQVTGKPIKFMGIGEKINGLEPFYPDRIASRILGMGD 300 >gi|83592520|ref|YP_426272.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rhodospirillum rubrum ATCC 11170] gi|83575434|gb|ABC21985.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rhodospirillum rubrum ATCC 11170] Length = 504 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 90/289 (31%), Positives = 153/289 (52%), Gaps = 23/289 (7%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELIHKMLM--- 97 D E+ L+ +D+ +AV ++ V ++ + ++V ++ V V +L+H L+ Sbjct: 28 DAAMREVRVALLEADVALAVVKQFVAQVKEQAIGQEV-IRSVTPGQMVVKLVHDALVDML 86 Query: 98 ---------PLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAA 146 P D +H P V IL+VG+ G GKTT K++ +++ K V++A+ Sbjct: 87 SGEGGVEAEPDPMSLGIDIAHTPPVPILMVGLQGSGKTTTSAKIALRITKRERKKVLMAS 146 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 D +R AA QL I ++T D + +G +A A + A+ DV+I+DTAGRLH Sbjct: 147 LDVYRPAAQRQLAILGEQTGVDTLEVVMGQKPVEIARRAMQAARVGGYDVVILDTAGRLH 206 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + +LM + + +R L PH VL V DA TGQ+A+ + F+ G TG+++T++ Sbjct: 207 IDEVLMTEVAE-VRALVN-----PHEVLLVTDAMTGQDAVNVAQEFNEKVGVTGIVLTRV 260 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG +RGG + + +P+ +G+GE ++ LE F A+ + I G D Sbjct: 261 DGDSRGGAALSMRAVTGVPIKLMGMGEKMDALEAFHAQRIAGRILGMGD 309 >gi|145637665|ref|ZP_01793319.1| Signal recognition particle protein [Haemophilus influenzae PittHH] gi|145269125|gb|EDK09074.1| Signal recognition particle protein [Haemophilus influenzae PittHH] Length = 462 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 101/305 (33%), Positives = 158/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72 F + S +L + + +I RL +D ++E L ++ L+ +D+ + V + K+ E L Sbjct: 2 FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61 Query: 73 KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K ++ Q L V + K + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KV++ + D +R AAI QL+ A DF S++ + +A A A+ Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKAALADAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVLI+DTAGRLH ++ +M I ++ L P L +DA TGQ+A + Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|330446979|ref|ZP_08310630.1| signal recognition particle protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491170|dbj|GAA05127.1| signal recognition particle protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 455 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 98/306 (32%), Positives = 153/306 (50%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + ++ RL DD +++ L ++ L+ +D+ + V ++ V+ + K A Sbjct: 2 FENLTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVKRV--KERA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPLS-----KPFNWDFS-HRPHVILVVGVNGVGKTTVIGK 130 V + L E I + L + D S P VIL+ G+ G GKTT +GK Sbjct: 60 VGTEVSKSLTPGQEFIKIVQAELELVMGEENEGLDLSCQPPAVILMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + KV++ + D +R AAI QL+ A DF S + +A A + Sbjct: 120 LGKLLKERDSKKVLVVSADVYRPAAIKQLETLAGDIGIDFFPSNVEQKPVEIAKAALEHG 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DV+I+DTAGRLH + +M I + + L P L V+DA TGQ+A Sbjct: 180 KLKFYDVVIVDTAGRLHVDEEMMDEIKDVHQTLN------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+I+TK+DG ARGG + + P+ FLGVGE + LEPF ++ Sbjct: 234 KAFNDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPNRVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|325577819|ref|ZP_08148094.1| signal recognition particle protein [Haemophilus parainfluenzae ATCC 33392] gi|325160564|gb|EGC72690.1| signal recognition particle protein [Haemophilus parainfluenzae ATCC 33392] Length = 463 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 102/305 (33%), Positives = 157/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72 F + S +L + + +I RL +D ++E L ++ L+ +D+ + V + K+ E L Sbjct: 2 FENLSDRLSKTLRNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61 Query: 73 KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K ++ Q L V + K + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTNVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + KV++ + D +R AAI QL+ A DF S++ +A A A+ Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQKPVEIAKAALADAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVLI+DTAGRLH +S +M I ++ L P L +DA TGQ+A + Sbjct: 181 LKFYDVLIVDTAGRLHVDSEMMDEIKQVHATLN------PIETLFTVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|296104280|ref|YP_003614426.1| signal recognition particle protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058739|gb|ADF63477.1| signal recognition particle protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 453 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 95/309 (30%), Positives = 154/309 (49%), Gaps = 25/309 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D ++E L ++ L+ +D+ + V + + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFINRVKEKAVG 61 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHRPHVILVVGVNGVGKTTVIGK 130 +V+ + L E + + L + + P V+L+ G+ G GKTT +GK Sbjct: 62 HEVN--KSLTPGQEFVKIVRNELVSAMGEENQVLNLAAQPPAVVLMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + KV++ + D +R AAI QL+ A + DF S++ + A K+A Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVGVDFFPSDVAQKPVDIVNAALKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246 + K DVL++DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF Sbjct: 231 NTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRI 290 Query: 307 SAVITGCLD 315 ++ I G D Sbjct: 291 ASRILGMGD 299 >gi|1147795|gb|AAC49735.1| Srp54p [Yarrowia lipolytica] Length = 536 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 92/285 (32%), Positives = 142/285 (49%), Gaps = 23/285 (8%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA------KDVSVQRVLYDVSELIHKML 96 D + +E+ L+ SD+ + + ++ +++ A K +Q+ L+D EL++ + Sbjct: 28 DAMLKEVCSALLESDVNIKLVSQLRQKVKNSVKATPNGASKKKVIQKALFD--ELVNLVG 85 Query: 97 MPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 + S F + +V++ VG+ G GKTT KL+ G KV L DTFR+ Sbjct: 86 VDESAASAAKFKPQKGKSNVVMFVGLQGSGKTTSCTKLAVYYQRRGFKVGLVCADTFRAG 145 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL-- 211 A DQLK A + F S +D A+A E + + +K +++I+DT+GR S L Sbjct: 146 AFDQLKQNATKAKIPFFGSYTETDPVAVAAEGVAKFKKEKFEIIIVDTSGRHRQESELFT 205 Query: 212 -MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 M IG ++ P S + VLDA+ GQ A Q F + +I+TKMDG A Sbjct: 206 EMVDIGAAVK---------PDSTIMVLDASIGQAAEPQSRAFKDASDFGSIILTKMDGHA 256 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +GGG I V P+ F+G GE I+DLE F K F + + G D Sbjct: 257 KGGGAISAVAATNTPIIFIGTGEHIHDLEAFSPKQFISKLLGIGD 301 >gi|326435414|gb|EGD80984.1| signal recognition particle protein [Salpingoeca sp. ATCC 50818] Length = 523 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 94/301 (31%), Positives = 154/301 (51%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLDDGVREEL-EDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--- 79 K+K + ++ S+ +D+ V +EL +D+ LI SD+ V + K+ + D Sbjct: 9 KIKGALWNMTSATVIDEEVFDELVKDICRALIESDVQVGLVSKLRNNIKAAVQFDDSGAG 68 Query: 80 -----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 +QR ++ +EL K++ P P+ ++P+VI+ VG+ G GKTT KL+ Sbjct: 69 VNRRRQIQRAVF--TELC-KLVDPGVTPWKPK-KNQPNVIMFVGLQGSGKTTTCTKLAYH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G K L DTFR+ A DQLK A + F S D +A + ++ + + Sbjct: 125 YQRRGWKACLVCADTFRAGAFDQLKQNATKARIPFYGSYTEIDPVVIAADGVEKFKQQGF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 +++I+DT+GR L +M++V +DP +++ V+DAT GQ Q + F Sbjct: 185 EIIIVDTSGRHKQEDSLFE---EMLQVSNAVDPD---NIIFVMDATIGQACQGQAQAFKD 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 +I+TK+DG A+GGG + V K P+ ++G GE I+DLEPF K F + + G Sbjct: 239 KVDVGAVIVTKLDGHAKGGGALSAVAATKSPIVYIGTGEHIDDLEPFQTKSFVSKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|320034158|gb|EFW16103.1| signal recognition particle protein SRP54 [Coccidioides posadasii str. Silveira] Length = 530 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 93/301 (30%), Positives = 148/301 (49%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ ++D+ S LD D + +E+ L+ +D+ V + Q + + + + Sbjct: 9 RINAAVSDLTRSNDLDEKVFDSMLKEICAALLSADVNVRLVQNLRKSIKSSVNFSSIPPA 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D +L+ ++ P S+PF R +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--QLV-ALVDPHSEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G K L DTFR+ A DQLK A + + S +D A +A + + + +K Sbjct: 125 YQTRGFKSALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAIVAADGVAKFKKEKF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 +V+I+DT+GR L A + ++ +K P + VLD++ GQ A Q F A Sbjct: 185 EVIIVDTSGRHKQEEDLFAEMTQIQNAVK------PDQTILVLDSSIGQAAEAQSAAFKA 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V P+ FLG GE + DLE F K F + G Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMLDLERFAPKPFIQKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|307277934|ref|ZP_07559018.1| signal recognition particle protein [Enterococcus faecalis TX0860] gi|306505331|gb|EFM74517.1| signal recognition particle protein [Enterococcus faecalis TX0860] Length = 472 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 98/309 (31%), Positives = 163/309 (52%), Gaps = 23/309 (7%) Query: 20 GFASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75 F S + +L++ ++ I ++ + V+E + ++ L+ +D+ + V + + + + Sbjct: 2 AFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKPVRERAV 61 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129 +V Q+++ V E + K L S+ + S + P VI++ G+ G GKTT G Sbjct: 62 GVEVLESLSPAQQIVKIVDEELTKTLG--SETVELNKSPKIPTVIMMTGLQGAGKTTFTG 119 Query: 130 KLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAF 186 KL+K M + +L AGD +R AAIDQLK+ + + ++G+DA + + Sbjct: 120 KLAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQL--EVPVFDMGTDANPVEIVRQGL 177 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A+ KK D ++IDTAGRLH + LM + K I+ L P+ +L V+DA TGQ+A+ Sbjct: 178 ALAKEKKNDYVLIDTAGRLHIDEALMDEL-KQIKELAN-----PNEILLVVDAMTGQDAV 231 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ G TG+++TKMDG RGG + I P+ F+G GE + DLE F Sbjct: 232 NVADSFNEQLGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRM 291 Query: 307 SAVITGCLD 315 S+ I G D Sbjct: 292 SSRILGMGD 300 >gi|291000150|ref|XP_002682642.1| predicted protein [Naegleria gruberi] gi|284096270|gb|EFC49898.1| predicted protein [Naegleria gruberi] Length = 319 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 125/226 (55%), Gaps = 29/226 (12%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSA 167 RP V+ + GVNG GKTT IGKL K ++G +++AA DT R+AA DQL+ W +RTS Sbjct: 72 RPTVVQICGVNGSGKTTTIGKLLHKYRESGTVRNIVVAAADTVRAAAPDQLRTWVERTSG 131 Query: 168 ----DFVCSE----------------------IGSDAAALAYEAFKQAQAKK-VDVLIID 200 D SE A ++ YEA +QA K+ VD++ +D Sbjct: 132 CTLVDLTESEKLKKQHTTTPQQVKVKNIRQVSYKVPAESVVYEAIQQALRKEDVDLVFVD 191 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL N M + + + + AP +LD T GQN+++Q ++F +G Sbjct: 192 TAGRLQNQEASMKELSLITEMCSKSRKGAPDHTWLILDGTIGQNSIQQAKLFQKYVRISG 251 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +I+TK+DG+A+GG ++ I KIPV ++G+GE ++DL+PF + F Sbjct: 252 IIVTKLDGSAKGGVILAIANELKIPVLYIGLGESVSDLKPFYPEQF 297 >gi|261378491|ref|ZP_05983064.1| signal recognition particle protein [Neisseria cinerea ATCC 14685] gi|269145034|gb|EEZ71452.1| signal recognition particle protein [Neisseria cinerea ATCC 14685] Length = 456 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/286 (30%), Positives = 151/286 (52%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + + ++V Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFVNTVKEQALGQEVVGSLTPDQAFIGVVNQALV 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + S P ++L+ G+ G GKTT +GKL++ + +D KV++ + D +R Sbjct: 84 ELMGKENKTLDLSVSP-PAIVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA GQ+A+ F+ TG+++TKMDG Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTARAFNEALPLTGVVLTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299 >gi|261391829|emb|CAX49286.1| signal recognition particle protein (fifty-four homolog) [Neisseria meningitidis 8013] Length = 456 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 151/286 (52%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + K ++V Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVVGSLTPDQAFIGVVNKALT 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + + P V+L+ G+ G GKTT GKL++ + +D KV++ + D +R Sbjct: 84 ELMGRENKTLDLSVAP-PAVVLMAGLQGAGKTTTAGKLARLLKNDQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA GQ+A+ + F+ TG+++TKMDG Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299 >gi|119470049|ref|ZP_01612854.1| 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA [Alteromonadales bacterium TW-7] gi|119446759|gb|EAW28032.1| 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA [Alteromonadales bacterium TW-7] Length = 459 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 95/307 (30%), Positives = 157/307 (51%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + +L + + +I RL +D +++ L ++ + +D+ + V + V+++ K A Sbjct: 2 FENLQERLGKTLKNISGRGRLTEDNIKDTLREVRMAFLEADVALPVVRDFVKQV--KERA 59 Query: 77 KDVSVQRVLYD-------VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L V E + K + ++ + + + P V+++ G+ G GKTT +G Sbjct: 60 VGVEVTKSLTPGQVFVKIVREELEKAMGEANEELSLN-AQPPAVVMMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+K + + K V++ + D +R AAI QL+ A DF S+I +A A Sbjct: 119 KLAKFLKERKKKSVLVVSADVYRPAAIKQLETLATEVDVDFFPSDISQKPVDIATAAITH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K +DV+++DTAGRLH +S +M I + + P L V+DA TGQ+A Sbjct: 179 AKKKFIDVVLVDTAGRLHVDSDMMDEIKDLHSAIN------PIETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+I+TK DG ARGG + I P+ F+GVGE + LEPF ++ Sbjct: 233 AKAFDEALPLTGVILTKTDGDARGGAALSIRHITGKPIKFMGVGERTDALEPFHPDRIAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|307596389|ref|YP_003902706.1| GTP-binding signal recognition particle SRP54 G- domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307551590|gb|ADN51655.1| GTP-binding signal recognition particle SRP54 G- domain protein [Vulcanisaeta distributa DSM 14429] Length = 446 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 91/276 (32%), Positives = 138/276 (50%), Gaps = 12/276 (4%) Query: 45 VREELEDLLIRSDIGVAVA---QKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMPL 99 V E++ +L+R+D+ V K +EE + S + +LY + + + K L Sbjct: 31 VLREIQRILLRADVSADVVLSITKTIEERFRQEKPPQGITSKEFLLYLLYQELVKALGGE 90 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 P N + S RP+ ++++GV G GKTT KL++ L+V L DT+R A QLK Sbjct: 91 EAP-NVNVSKRPYKLMLIGVEGSGKTTSAAKLARFYIKRNLRVGLIETDTYRPGAYHQLK 149 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 A+R +A F E D A+ + Q +VD++IIDTAGR H N + K I Sbjct: 150 QLAERVNALFYGEENSKDPIAILRHGLEYMQRNRVDLIIIDTAGR-HRNEEELLKEAKAI 208 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 D P V+ V+DAT G+ A Q E F + +TKMD TA+ GG + V Sbjct: 209 -----YDEAKPDEVMLVIDATVGRQAAAQTEAFMKYVPIHSVFLTKMDSTAKAGGALTSV 263 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + F+GVGE I+++E F A + + + G D Sbjct: 264 IRSGARIKFIGVGEDIDEIEVFDANKYVSRLLGMGD 299 >gi|259909410|ref|YP_002649766.1| signal recognition particle protein [Erwinia pyrifoliae Ep1/96] gi|224965032|emb|CAX56563.1| Signal recognition particle protein (Fifty-four homolog) [Erwinia pyrifoliae Ep1/96] gi|283479488|emb|CAY75404.1| Signal recognition 54 kDa protein (SRP54) [Erwinia pyrifoliae DSM 12163] Length = 453 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/212 (36%), Positives = 115/212 (54%), Gaps = 13/212 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT +GKL K + + KV++ + D +R AAI QL+ A++ Sbjct: 97 AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S++ + A +QA+ K DVL++DTAGRLH + +M I ++ Sbjct: 157 VDFCPSDLSQRPVDIVKNALQQAKLKFYDVLLVDTAGRLHVDEAMMDEIKQV-------- 208 Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 HA P L V+DA TGQ+A F+ TG+++TK+DG ARGG + I Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTARAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+GVGE LEPF ++ I G D Sbjct: 268 KPIKFMGVGEKTEALEPFYPDRIASRILGMGD 299 >gi|307132203|ref|YP_003884219.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Dickeya dadantii 3937] gi|306529732|gb|ADM99662.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Dickeya dadantii 3937] Length = 453 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 95/308 (30%), Positives = 155/308 (50%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D +++ L ++ L+ +D+ + V + + + + Sbjct: 2 FENLTDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINRVKEQAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 DV+ Q + V + + +++ N + P V+L+ G+ G GKTT +GKL Sbjct: 62 HDVNKSLTPGQEFVKIVQNELVTAMGEVNQALNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + KV++ + D +R AAI QL+ A+ DF SE + A + A+ Sbjct: 121 GKFLREKQKKKVLVVSADVYRPAAIKQLETLAETVGVDFFPSEAHEKPIDIVNRALQHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K DVL++DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 181 LKFYDVLLVDTAGRLHVDDAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF + Sbjct: 232 TAKAFNEALPLTGVILTKIDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFYPDRIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|261855005|ref|YP_003262288.1| signal recognition particle protein [Halothiobacillus neapolitanus c2] gi|261835474|gb|ACX95241.1| signal recognition particle protein [Halothiobacillus neapolitanus c2] Length = 451 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 88/288 (30%), Positives = 149/288 (51%), Gaps = 16/288 (5%) Query: 37 SSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDV 88 R +D +++ L ++ L+ +D+ + V + V ++ + +V Q + V Sbjct: 19 QGRLTEDNIKDALREVRMALLEADVALPVVRDFVNQVKERAVGAEVIKSLKPGQVFIKVV 78 Query: 89 SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAG 147 S+ + ++ + N + P V+L+ G+ G GKTT +GKL + + + KV++ + Sbjct: 79 SDELTALMGAENSALNL-AAQPPAVVLMAGLQGAGKTTTVGKLGRLLRTREQKKVLVVSA 137 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 D +R AAI QL+ A + DF S+ G + A KQA+ DVLI+DTAGRLH Sbjct: 138 DVYRPAAIKQLETVAKQVGVDFFPSDAGQKPLDIVQSALKQARVGFYDVLIVDTAGRLHV 197 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 ++ +M + ++ L P L V+DA TGQ+A + F+ V TG+++TK D Sbjct: 198 DAEMMDEVRQLHAALN------PVETLFVVDAMTGQDAANTAKAFNEVLPLTGVVLTKAD 251 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G ARGG + + P+ F+G+GE ++ LEPF ++ I G D Sbjct: 252 GDARGGAALSVRAITGKPIKFIGMGEKLDALEPFHPDRIASRILGMGD 299 >gi|159905503|ref|YP_001549165.1| signal recognition particle protein Srp54 [Methanococcus maripaludis C6] gi|238686963|sp|A9A9B0|SRP54_METM6 RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|159886996|gb|ABX01933.1| GTP-binding signal recognition particle SRP54 G- domain [Methanococcus maripaludis C6] Length = 450 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 94/284 (33%), Positives = 152/284 (53%), Gaps = 25/284 (8%) Query: 45 VREELEDL---LIRSDIGV--------AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH 93 V+E ++D+ LI+SD+ V + +K +EE K +K + +++YD EL+ Sbjct: 27 VKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGLSKKEHIVKIVYD--ELV- 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 K+L + D S + VIL++G+ G GKTT KL++ + GL+ L A D +R A Sbjct: 84 KLLGETIQKLELDASKK-SVILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVYRPA 142 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAA-LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 A QLK +++ + E + + E ++ KKVDV+IIDTAGR L+ Sbjct: 143 AYQQLKQLSEKINVPLFGDETRTKTPVDITKEGMEKL--KKVDVIIIDTAGRHKEEEGLL 200 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTTGLIMTKMDGTAR 271 A + +M D P+ ++ V+D T GQ A Q + F +V+ +++TK+DG+A+ Sbjct: 201 AEMKEM------KDLTNPNEIILVIDGTLGQQAKNQAKAFKDSVSEIGSILVTKLDGSAK 254 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 GGG + V P+ F+G GEG+++LE F K F + I G D Sbjct: 255 GGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGFGD 298 >gi|254672835|emb|CBA07016.1| signal recognition particle protein [Neisseria meningitidis alpha275] Length = 446 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 151/286 (52%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93 +D ++E L ++ L+ +D+ + V ++ V + K ++V Q + V++ + Sbjct: 14 EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVVGSLTPDQAFIGVVNKALT 73 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + + P V+L+ G+ G GKTT GKL++ + +D KV++ + D +R Sbjct: 74 ELMGRENKTLDLSVAP-PAVVLMAGLQGAGKTTTAGKLARLLKNDQKKKVLVVSADVYRP 132 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 133 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 192 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA GQ+A+ + F+ TG+++TKMDG Sbjct: 193 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 243 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 244 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 289 >gi|225018488|ref|ZP_03707680.1| hypothetical protein CLOSTMETH_02435 [Clostridium methylpentosum DSM 5476] gi|224948689|gb|EEG29898.1| hypothetical protein CLOSTMETH_02435 [Clostridium methylpentosum DSM 5476] Length = 453 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 90/271 (33%), Positives = 144/271 (53%), Gaps = 19/271 (7%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + V ++ + DV Q+V+ V+E + ++ S+ +F Sbjct: 39 LLEADVNYKVVKDFVAKVSERSVGSDVLESLTPAQQVIKIVNEELCSLMG--SEHTRIEF 96 Query: 108 -SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 S P VI++ G+ G GKTT KL+K G + +L A D +R AAI QLK+ ++ Sbjct: 97 PSKPPCVIMMCGLQGSGKTTHSAKLAKYFKSQGHRPLLVACDVYRPAAIQQLKVVGEKAG 156 Query: 167 ADFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 A E+G +D +A EA K A+ D++I+DTAGRLH + LM LK + Sbjct: 157 ASVF--EMGNTDPVEIAKEALKHAKDYGNDLVILDTAGRLHIDEQLM-------NELKNI 207 Query: 226 DPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P+ +L V+D+ TGQ+A+ + F+ G+I+TK+DG RGG + ++ Sbjct: 208 KAEVNPNEILLVVDSMTGQDAVNVAKSFNETLEIDGVILTKLDGDTRGGAALSVLAVTGK 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 PV F G+GE ++DLEPF + ++ I G D Sbjct: 268 PVKFAGIGEKLDDLEPFHPERMASRILGMGD 298 >gi|332705584|ref|ZP_08425660.1| signal recognition particle subunit FFH/SRP54 [Lyngbya majuscula 3L] gi|332355376|gb|EGJ34840.1| signal recognition particle subunit FFH/SRP54 [Lyngbya majuscula 3L] Length = 479 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 92/295 (31%), Positives = 149/295 (50%), Gaps = 29/295 (9%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ--------RVL 85 D ISS + D ++E + L+ +D+ + V + V E+ K +V+ +++ Sbjct: 20 DKISSSNIQDALKE-VRRALLSADVNLQVVKDFVAEVEAKAQGSEVTSGVRPDQQFIKIV 78 Query: 86 YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 YD EL+ M +PL++ P V+L+ G+ G GKTT KL+ + Sbjct: 79 YD--ELVQVMGETNVPLAQA-----DTPPTVVLMAGLQGTGKTTASAKLALHLRKQERSC 131 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIID 200 +L A D +R AAIDQL + D E+G++A +A + ++A+A +D +IID Sbjct: 132 LLVATDVYRPAAIDQLVTLGQQI--DVPVFELGTEADPVEIARQGVERAKAMAIDTVIID 189 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL + +M + ++ ++ PH L V+DA TGQ A FH G TG Sbjct: 190 TAGRLQIDQEMMGELSRIKETVQ------PHDTLLVVDAMTGQEAATLTRTFHEQIGITG 243 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I++K+DG +RGG + + P+ F+GVGE + L+PF ++ I G D Sbjct: 244 AILSKLDGDSRGGAALSVRQISGQPIKFVGVGEKVEALQPFYPDRMASRILGMGD 298 >gi|329947898|ref|ZP_08294830.1| signal recognition particle protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328523522|gb|EGF50620.1| signal recognition particle protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 562 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 84/240 (35%), Positives = 130/240 (54%), Gaps = 13/240 (5%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 Q+V+ V+E + ++L ++ NW P +I++ G+ G GKTT+ GKL + + D G + Sbjct: 72 QQVVKIVNEELIEVLGGETREINW-ADRGPTIIMLAGLQGAGKTTLAGKLGRWLRDQGKR 130 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLI 198 V+L A D R A+ QL + A+R E G+ D A+A +QA+ DV++ Sbjct: 131 VLLVASDLQRPNAVTQLSVVAERAGVHVWAPEPGNGVGDPVAVARSGVEQARTNGYDVVV 190 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +DTAGRL ++ +M + IR+ D PH +L VLDA GQ+A+ F G Sbjct: 191 VDTAGRLGVDAEMM---DQAIRIR---DAVVPHEILFVLDAMVGQDAVNTSVAFRDGVGF 244 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 TG++++K+DG ARGG + + PV F GEG+ D E F A ++ I LD G+ Sbjct: 245 TGVVLSKLDGDARGGAALSVRGVTGAPVLFSSTGEGLTDFERFHADRMASRI---LDMGD 301 >gi|308048457|ref|YP_003912023.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ferrimonas balearica DSM 9799] gi|307630647|gb|ADN74949.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ferrimonas balearica DSM 9799] Length = 455 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 157/308 (50%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + +I RL +D +++ L ++ L+ +D+ + V ++ + ++ + Sbjct: 2 FQNLSERLNQTLKNISGRGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVRERAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q + V + + ++ N + P VI++ G+ G GKTT +GKL Sbjct: 62 TEVSKSLTPGQAFIKIVRTEMEAAMGEANEALNL-AAQPPAVIMMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + K V++ + D +R AAI QL+ A +F S + A+A A A+ Sbjct: 121 AKFLKERHKKSVLVVSADVYRPAAIKQLETLASDIGVEFFPSTVEQKPVAIATAAIDHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K DV+I+DTAGRLH +S +M I + HA P L +DA TGQ+A Sbjct: 181 RKFFDVVIVDTAGRLHVDSDMMEEIKAL---------HAAINPVETLFTVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF + Sbjct: 232 TAKAFNDALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRVA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|302811179|ref|XP_002987279.1| hypothetical protein SELMODRAFT_158663 [Selaginella moellendorffii] gi|302815043|ref|XP_002989204.1| hypothetical protein SELMODRAFT_272046 [Selaginella moellendorffii] gi|300143104|gb|EFJ09798.1| hypothetical protein SELMODRAFT_272046 [Selaginella moellendorffii] gi|300144914|gb|EFJ11594.1| hypothetical protein SELMODRAFT_158663 [Selaginella moellendorffii] Length = 491 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 91/277 (32%), Positives = 138/277 (49%), Gaps = 18/277 (6%) Query: 48 ELEDLLIRSDIGVAVAQ-------KIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99 E+ L ++D+ + + Q KIV E L + K +Q+ +++ EL ML P Sbjct: 34 EISRALFQADVQLKMVQTMCTNIKKIVNLEDLAAGHNKRRIIQQAVFN--ELCS-MLDP- 89 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 KP +P VI+ VG+ G GKTT K + G K L DTFR+ A DQLK Sbjct: 90 GKPSFSPQKGKPSVIMFVGLQGSGKTTTCTKYAYHYQKKGFKPALICADTFRAGAFDQLK 149 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 A + + F S +D +A E + +A+K D++I+DT+GR + L + ++ Sbjct: 150 QNATKANIPFYGSYTETDPVKIAQEGLETFRAEKCDLIIVDTSGRHKQEAALFEEMRQVA 209 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 +P V+ V+D + GQ A Q + F A +I+TKMDG A+GGG + V Sbjct: 210 AAT------SPDLVIFVMDGSIGQAAFDQAQAFKQSASVGAVIITKMDGHAKGGGALSAV 263 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316 K PV F+G GE I++ E F K F + + G D+ Sbjct: 264 AATKSPVIFIGTGEHIDEFETFETKPFVSRLLGMGDW 300 >gi|126724941|ref|ZP_01740784.1| signal recognition particle protein [Rhodobacterales bacterium HTCC2150] gi|126706105|gb|EBA05195.1| signal recognition particle protein [Rhodobacterales bacterium HTCC2150] Length = 499 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 89/286 (31%), Positives = 150/286 (52%), Gaps = 20/286 (6%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVE--------ELLTKRYAKDVSVQRVLYDVSE 90 D+ V+ L ++ L+ +D+ +AVA+ V+ + +TK V ++++D E Sbjct: 24 DEDVKTALREVRVALLEADVSLAVARDFVKAVQDKASGQAVTKSVTPGQQVVKIVHD--E 81 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDT 149 L+H + + P + P IL+VG+ G GKTT KL+K++++ G +V++A+ D Sbjct: 82 LVHVLAGDNAVPGELKIDNAPAPILMVGLQGSGKTTTTAKLAKRLTEKNGKRVLMASLDV 141 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 R AA++QL I ++ D + G +A A +QA DV ++DTAGRLH + Sbjct: 142 NRPAAMEQLAILGNQIGVDTLPIVAGQKPVDIAKRAKQQATLGGYDVYMLDTAGRLHIDE 201 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 +LM + + V K P L V+D TGQ+A+ E F G +G+++T+MDG Sbjct: 202 VLMEEVETVRDVTK------PRETLLVVDGLTGQDAVNVAEEFDGKIGVSGVVLTRMDGD 255 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + + P+ F+G+GE ++ LE F + + I G D Sbjct: 256 GRGGAALSMRAVTGKPIKFVGLGEKMDALEEFHPERVAGRILGMGD 301 >gi|121533796|ref|ZP_01665623.1| signal recognition particle protein [Thermosinus carboxydivorans Nor1] gi|121307787|gb|EAX48702.1| signal recognition particle protein [Thermosinus carboxydivorans Nor1] Length = 444 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 113/208 (54%), Gaps = 6/208 (2%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P V+++VG+ G GKTT GKL+ + + +L A D +R AAI QL++ ++ Sbjct: 96 SRPPTVVMLVGLQGAGKTTTAGKLAHLLKKQNKRPLLVAADVYRPAAIKQLQVLGEKLGL 155 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +A +A + A + D++IIDTAGRLH N LM + + +K Sbjct: 156 PVFTLGDKESPVRIAQKAIEHALSHARDIVIIDTAGRLHINEQLMDELKAIKNTVK---- 211 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 PH +L V+DA TGQ+A+ E F+ G G+I+TK+DG ARGG + + P+ Sbjct: 212 --PHEILLVVDAMTGQDAVTVAEAFNEQLGIDGVILTKLDGDARGGAALSVRAVTGRPIK 269 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 ++G+GE ++ LEPF ++ I G D Sbjct: 270 YVGMGEKLDALEPFYPDRMASRILGMGD 297 >gi|51246651|ref|YP_066535.1| signal recognition particle protein (SRP54) [Desulfotalea psychrophila LSv54] gi|50877688|emb|CAG37528.1| probable signal recognition particle protein (SRP54) [Desulfotalea psychrophila LSv54] Length = 480 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 88/285 (30%), Positives = 149/285 (52%), Gaps = 13/285 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSE 90 ++ + D +RE + L+ +D+ VA++ V + K ++V Q+++ V E Sbjct: 50 LTEDNIQDAMRE-VRIALLDADVSFKVAKQFVASVTEKAIGREVGKSLSPGQQIIKIVHE 108 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + +L + D +P VI++ G+ G GKTT GKL+K + D G + L D + Sbjct: 109 ELVSLLGGDTAQIELD-GRQPVVIMMAGLQGSGKTTTSGKLAKMLKDKGRRPYLVPADVY 167 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAI+QL++ DR S + + +A +A+ K D +IIDTAGRLH +++ Sbjct: 168 RPAAIEQLQVLGDRLDVPVHPSTTATKPVDICTQAIAEAKIKNYDTVIIDTAGRLHVDNV 227 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + ++ ++ +L V DA TGQ+A+ + F+ +G+I+TKM+G A Sbjct: 228 LMGELQEIQAAVQL------SEILFVADAMTGQDAVTVADKFNTDLEISGIILTKMEGDA 281 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I P+ F+GVGE ++ LE F + ++ I G D Sbjct: 282 RGGAALSIKTVTGKPIKFVGVGEALDALEVFHPERVASRILGMGD 326 >gi|303319737|ref|XP_003069868.1| signal recognition particle protein, putative [Coccidioides posadasii C735 delta SOWgp] gi|240109554|gb|EER27723.1| signal recognition particle protein, putative [Coccidioides posadasii C735 delta SOWgp] Length = 530 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 93/301 (30%), Positives = 148/301 (49%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ ++D+ S LD D + +E+ L+ +D+ V + Q + + + + Sbjct: 9 RINAAVSDLTRSNDLDEKVFDSMLKEICAALLSADVNVRLVQNLRKSIKSSVNFSSIPPA 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D +L+ ++ P S+PF R +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--QLV-ALVDPHSEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G K L DTFR+ A DQLK A + + S +D A +A + + + +K Sbjct: 125 YQTRGFKSALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAIVAADGVAKFKKEKF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 +V+I+DT+GR L A + ++ +K P + VLD++ GQ A Q F A Sbjct: 185 EVIIVDTSGRHKQEEDLFAEMTQIQNAVK------PDQTILVLDSSIGQAAEAQSAAFKA 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V P+ FLG GE + DLE F K F + G Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMLDLERFAPKPFIQKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|315049435|ref|XP_003174092.1| signal recognition particle protein [Arthroderma gypseum CBS 118893] gi|311342059|gb|EFR01262.1| signal recognition particle protein [Arthroderma gypseum CBS 118893] Length = 543 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/301 (28%), Positives = 150/301 (49%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ ++D+ S +D D + +E+ L+ +D+ V + Q++ + + + Sbjct: 9 RINAAVSDLTRSNTVDEKALDAMIKEICAALLSADVNVRLVQQLRKSIKAAVQLPSIPPA 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D +L+ ++ P ++PF +P+VI++VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--QLV-ALVDPHAEPFKPK-KGKPNVIMMVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G K L DTFR+ A DQLK A + + S +D ++ E + + ++ Sbjct: 125 YQTKGFKAALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPVVVSSEGVAKFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D++I+DT+GR L + ++ +K P + VLD+T GQ A Q F + Sbjct: 185 DIIIVDTSGRHRQEEDLFEEMTQIQAAIK------PDQTIMVLDSTIGQAAETQSAAFKS 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V + P+ FLG GE + DLE F + F + G Sbjct: 239 AADFGAIIITKTDGHAAGGGAISAVAATRTPIIFLGTGEHMLDLERFAPQPFVQKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|1711510|sp|P49966|SR542_ARATH RecName: Full=Signal recognition particle 54 kDa protein 2; Short=SRP54 gi|515679|gb|AAA66199.1| signal recognition particle 54 kDa subunit [Arabidopsis thaliana] Length = 495 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 93/289 (32%), Positives = 143/289 (49%), Gaps = 19/289 (6%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQ-------KIVE-ELLTKRYAKDVSVQRVLY 86 II + L+D + E + L++SD+ + + KIV E L + K +++ ++ Sbjct: 22 IIDEKALNDCLNE-ITRALLQSDVSFPLVKEMQTNIKKIVNLEDLAAGHNKRRIIEQAIF 80 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 SEL KML P F +P V++ VG+ G GKTT K + G K L Sbjct: 81 --SELC-KMLDPGKSAFAPK-KAKPRVVMFVGLQGSGKTTTCTKYAYYHQKKGYKPALVC 136 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 DTFR+ A DQLK A ++ + S GSD +A E + + + D++I+DT+GR Sbjct: 137 ADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDRFKKENCDLIIVDTSGRHK 196 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + L + ++ K P V+ V+D++ GQ A Q F +I+TKM Sbjct: 197 QQASLFEEMRQISEATK------PDLVIFVMDSSIGQTAFEQARAFKQTVAVGAVIITKM 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG A+GGG + V K PV F+G GE +++ E F AK F + + G D Sbjct: 251 DGHAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLLGNGD 299 >gi|150402723|ref|YP_001330017.1| signal recognition particle protein Srp54 [Methanococcus maripaludis C7] gi|166222336|sp|A6VHE0|SRP54_METM7 RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|150033753|gb|ABR65866.1| GTP-binding signal recognition particle SRP54 G- domain [Methanococcus maripaludis C7] Length = 450 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 93/284 (32%), Positives = 152/284 (53%), Gaps = 25/284 (8%) Query: 45 VREELEDL---LIRSDIGV--------AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH 93 V+E ++D+ LI+SD+ V + +K +EE K +K + +++YD EL++ Sbjct: 27 VKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGLSKKEHIVKIVYD--ELVN 84 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 +L ++ D S + VIL++G+ G GKTT KL++ + GL+ L A D +R A Sbjct: 85 -LLGETTQKLELDPSKK-SVILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVYRPA 142 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAA-LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 A QLK +++ + E + + E ++ KKVDV+IIDTAGR L+ Sbjct: 143 AYQQLKQLSEKINVPLFGDETRTKTPVEITKEGMEKL--KKVDVIIIDTAGRHKEEEGLL 200 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF-HAVAGTTGLIMTKMDGTAR 271 A + +M D P ++ V+D T GQ A Q + F +V+ +++TK+DG+A+ Sbjct: 201 AEMREM------KDLTNPTEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKLDGSAK 254 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 GGG + V P+ F+G GEG+++LE F K F + I G D Sbjct: 255 GGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGMGD 298 >gi|223986417|ref|ZP_03636422.1| hypothetical protein HOLDEFILI_03734 [Holdemania filiformis DSM 12042] gi|223961613|gb|EEF66120.1| hypothetical protein HOLDEFILI_03734 [Holdemania filiformis DSM 12042] Length = 462 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 100/321 (31%), Positives = 164/321 (51%), Gaps = 32/321 (9%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A ESL+ +L K F + S + K ++ + +DD +RE + L+ +D+ K Sbjct: 1 MAFESLT--ERLNKAFKNISGQGK------LTEKNMDDMLRE-VRLALLEADVNY----K 47 Query: 66 IVEELLTKRYAKDVSVQRVLYD-------VSELIHKMLMPL--SKPFNWDFSHRPH-VIL 115 IV++ L K KD +V + +Y V +++H L+ L K +F V++ Sbjct: 48 IVKDFLVK--VKDKAVGQEVYTSLNPSQMVVKIVHDELVALLGEKEATLNFKESGMTVVM 105 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 +VG+ G GKTT +GK++ + K ML A D R AAI+QL+ A+ Sbjct: 106 MVGLQGTGKTTSVGKITSLLKRKYNKHPMLIAADVIRPAAIEQLQTLGKEVGAEVFSLGT 165 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 +DA + A+ D+++IDTAGRLH + LM + K+ + K P +L Sbjct: 166 ETDAVETVRQGLAHAKEIGADIVLIDTAGRLHIDEALMEELAKIKEIAK------PDDIL 219 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 +DA TGQ+ + + FH TGL++TK+DG +RGGG++ + ++PV F+G+GE Sbjct: 220 LTVDAMTGQDIINVAQAFHEKLDVTGLVVTKLDGDSRGGGVLSVRSITQVPVKFIGLGEK 279 Query: 295 INDLEPFVAKDFSAVITGCLD 315 + DL+ F + I G D Sbjct: 280 MEDLDVFYPDRMADRILGMGD 300 >gi|240277685|gb|EER41193.1| signal recognition particle protein [Ajellomyces capsulatus H143] gi|325093770|gb|EGC47080.1| signal recognition particle protein SRP54 [Ajellomyces capsulatus H88] Length = 527 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 91/301 (30%), Positives = 145/301 (48%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ + D+ S +D D + +E+ L+ +D+ V + Q + + + L Sbjct: 9 RINAAVNDLTRSNNVDAQAFDAMIKEICAALLSADVNVRLVQSLRKSIKAAVPFSSLPPA 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D +L+ ++ P ++PF R +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKTVFD--QLV-ALVDPHAEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G + L DTFR+ A DQLK A + + S +D A +A E + + ++ Sbjct: 125 YQTRGFRAALVCADTFRAGAFDQLKQNATKAKIPYFGSLTQTDPAVVAAEGVAKFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D++I+DT+GR L + ++ +K P + VLD T GQ A Q F A Sbjct: 185 DIIIVDTSGRHKQEEDLFVEMTQIQTAIK------PDQTILVLDGTIGQAAESQSAAFKA 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V P+ FLG GE + DLE F K F + G Sbjct: 239 AADFGAIIITKTDGNAAGGGAISAVAATHTPIIFLGTGEHMLDLERFSPKPFIQKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|217076198|ref|YP_002333914.1| ffh signal recognition particle protein [Thermosipho africanus TCF52B] gi|217036051|gb|ACJ74573.1| ffh signal recognition particle protein [Thermosipho africanus TCF52B] Length = 435 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 152/302 (50%), Gaps = 16/302 (5%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 KL+K F + S K K I+ + + + ++ ++ L+ +D+ V ++ + E+ K Sbjct: 8 KLSKAFKTLSGKGK------ITEKNIKEAIKM-VKLSLLEADVNYKVVKEFIAEVTEKAT 60 Query: 76 AKDV--SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 ++V S+ + L +++ + + H P I++VG+ G GKTT KL+ Sbjct: 61 GEEVLKSLTPDQMFIKILRDELIRVMGEKSQLSLVHSPSYIMMVGLQGSGKTTSAAKLAN 120 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 + G K L A DT+R AAIDQL + + D + EA K+ + Sbjct: 121 LLKKKGKKTFLVAADTYRPAAIDQLITLGKKIDVPVFYGD-RKDPVKIVREAIKEVKDSG 179 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +V+I DTAGRLH + +M + ++ +L P +L V+DA GQ+A+ ++F+ Sbjct: 180 YNVVIFDTAGRLHVDDEMMNELEEIKDILN------PDEILMVVDAMAGQDAVNSAKIFN 233 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 TG ++TKMDG ARGG ++ I P+ F+GVGE I DLE F + ++ I G Sbjct: 234 ERLDVTGYVVTKMDGDARGGVILSIRYITNKPIKFIGVGEKIEDLEEFHPERIASRILGL 293 Query: 314 LD 315 D Sbjct: 294 GD 295 >gi|50555115|ref|XP_504966.1| YALI0F03839p [Yarrowia lipolytica] gi|54042305|sp|Q99150|SRP54_YARLI RecName: Full=Signal recognition particle 54 kDa protein homolog; Short=SRP54 gi|49650836|emb|CAG77773.1| YALI0F03839p [Yarrowia lipolytica] Length = 536 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 92/285 (32%), Positives = 142/285 (49%), Gaps = 23/285 (8%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA------KDVSVQRVLYDVSELIHKML 96 D + +E+ L+ SD+ + + ++ +++ A K +Q+ L+D EL++ + Sbjct: 28 DAMLKEVCSALLESDVNIKLVSQLRQKVKNSVKATPNGASKKKVIQKALFD--ELVNLVG 85 Query: 97 MPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 + S F + +V++ VG+ G GKTT KL+ G KV L DTFR+ Sbjct: 86 VDESAASAAKFKPQKGKSNVVMFVGLQGSGKTTSCTKLAVYYQRRGFKVGLVCADTFRAG 145 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL-- 211 A DQLK A + F S +D A+A E + + +K +++I+DT+GR S L Sbjct: 146 AFDQLKQNATKAKIPFFGSYTETDPVAVAAEGVAKFKKEKFEIIIVDTSGRHRQESELFT 205 Query: 212 -MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 M IG ++ P S + VLDA+ GQ A Q F + +I+TKMDG A Sbjct: 206 EMVDIGAAVK---------PDSTIMVLDASIGQAAEPQSRAFKDASDFGSIILTKMDGHA 256 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +GGG I V P+ F+G GE I+DLE F K F + + G D Sbjct: 257 KGGGAISAVAATNTPIIFIGTGEHIHDLEAFSPKQFISKLLGIGD 301 >gi|56752330|ref|YP_173031.1| signal recognition particle receptor [Synechococcus elongatus PCC 6301] gi|56687289|dbj|BAD80511.1| signal recognition particle receptor [Synechococcus elongatus PCC 6301] Length = 496 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 92/295 (31%), Positives = 151/295 (51%), Gaps = 29/295 (9%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA--------KDVSVQRVL 85 D IS + + ++E + L+ +D+ + V ++ + ++ K D +V+ Sbjct: 31 DKISESNVQEALKE-VRRALLEADVNLGVVKEFIAQVQEKAVGTQVISGIRPDQQFIKVV 89 Query: 86 YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 YD EL+ M +PL++ + P VIL+ G+ G GKTT KL+ + G Sbjct: 90 YD--ELVQVMGETHVPLAQ-----AAKAPTVILMAGLQGAGKTTATAKLALHLRKEGRST 142 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIID 200 +L A D +R AAIDQL + D E+GSDA +A + ++A+ + +D +I+D Sbjct: 143 LLVATDVYRPAAIDQLITLGKQI--DVPVFELGSDANPVEIARQGVEKARQEGIDTVIVD 200 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL ++ +M + ++ + APH VL V+D+ GQ A FH G TG Sbjct: 201 TAGRLQIDTEMMEELAQVKEAI------APHEVLLVVDSMIGQEAPSLTRSFHERIGITG 254 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I+TK+DG +RGG + I P+ F+G+GE + L+PF + ++ I G D Sbjct: 255 AILTKLDGDSRGGAALSIRRVSGHPIKFVGLGEKVEALQPFHPERMASRILGMGD 309 >gi|169827098|ref|YP_001697256.1| signal recognition particle-like (SRP) component [Lysinibacillus sphaericus C3-41] gi|168991586|gb|ACA39126.1| signal recognition particle-like (SRP) component [Lysinibacillus sphaericus C3-41] Length = 452 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 84/237 (35%), Positives = 133/237 (56%), Gaps = 12/237 (5%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GL 140 Q+V+ V + + +++ P ++ + P VI++VG+ G GKTT GKL+ + Sbjct: 73 QQVIKIVQDELTELMGGEQSPIKFN-TKPPTVIMMVGLQGAGKTTTTGKLANVLRKKYNR 131 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLI 198 K +L A D +R AA+ QL+ + S +G+D + +A +A ++A+ DV+I Sbjct: 132 KPLLVAADVYRPAAVQQLETLGKQLSLPVFS--LGTDISPVKIARQAIEKAKEDHHDVVI 189 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 IDTAGRLH + LM + K IR LK P V V+DA TGQ+A+ E F+ G Sbjct: 190 IDTAGRLHIDEDLMQEL-KDIRALKE-----PDEVFLVVDAMTGQDAVNVAESFNEAIGI 243 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TG+++TK+DG RGG + I + P+ F+G+GE ++ LEPF + ++ I G D Sbjct: 244 TGVVLTKLDGDTRGGAALSIRSVTQKPIKFVGMGEKMDALEPFHPERMASRILGMGD 300 >gi|225557139|gb|EEH05426.1| signal recognition particle protein SRP54 [Ajellomyces capsulatus G186AR] Length = 527 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 91/301 (30%), Positives = 145/301 (48%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ + D+ S +D D + +E+ L+ +D+ V + Q + + + L Sbjct: 9 RINAAVNDLTRSNNVDAQAFDAMIKEICAALLSADVNVRLVQSLRKSIKAAVPFSSLPPA 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D +L+ ++ P ++PF R +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKTVFD--QLV-ALVDPHAEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G + L DTFR+ A DQLK A + + S +D A +A E + + ++ Sbjct: 125 YQTRGFRAALVCADTFRAGAFDQLKQNATKAKIPYFGSLTQTDPAVVAAEGVAKFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D++I+DT+GR L + ++ +K P + VLD T GQ A Q F A Sbjct: 185 DIIIVDTSGRHKQEEDLFVEMTQIQTAIK------PDQTILVLDGTIGQAAESQSAAFKA 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V P+ FLG GE + DLE F K F + G Sbjct: 239 AADFGAIIITKTDGNAAGGGAISAVAATHTPIIFLGTGEHMLDLERFSPKPFIQKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|225619739|ref|YP_002720996.1| signal recognition particle GTPase [Brachyspira hyodysenteriae WA1] gi|225214558|gb|ACN83292.1| Signal recognition particle GTPase [Brachyspira hyodysenteriae WA1] Length = 323 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 95/274 (34%), Positives = 151/274 (55%), Gaps = 13/274 (4%) Query: 37 SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---LTKRYAKDVS-VQRVLYDVSELI 92 ++ ++D LE+ LI +D GV + I+ +L + K KD S ++ L ++ LI Sbjct: 53 NTSSINDEFFASLENTLITADAGVETTKDIISKLRDVIEKENIKDPSEAKKYLREI--LI 110 Query: 93 HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 K + S+ + ++ +VGVNGVGKTT I KL+ + + KV+LAA DTFR+ Sbjct: 111 SKFI---SRKIELN---GKTILFIVGVNGVGKTTSIAKLANILKNDH-KVILAAADTFRA 163 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL+ WA+R S V + D A++ + A +A+A D++I+DTAGR HN L+ Sbjct: 164 AAIEQLEEWANRLSVTIVKGQQAGDPASVLFSALDKAKATDADIVIVDTAGRFHNQENLV 223 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + KM ++ + VLDA G N + Q ++F G I++K+D TA+G Sbjct: 224 RQLEKMKKIATERFTEFKFVPILVLDANVGHNGIEQAKVFTNALDIQGAIVSKLDSTAKG 283 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G I I +P+Y+ G GE ++D + F A+ F Sbjct: 284 GVAISIAHYLSLPIYYGGFGEKVDDFKEFDAESF 317 >gi|226313205|ref|YP_002773099.1| signal recognition particle protein fifty-four homolog [Brevibacillus brevis NBRC 100599] gi|226096153|dbj|BAH44595.1| signal recognition particle protein fifty-four homolog [Brevibacillus brevis NBRC 100599] Length = 470 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 74/210 (35%), Positives = 116/210 (55%), Gaps = 7/210 (3%) Query: 107 FSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 +HRP VI++ G+ G GKTT GKL+K + K +L AGD +R AAI QL++ ++ Sbjct: 96 MAHRPPTVIMMAGLQGAGKTTTTGKLAKYLQKQNRKPLLVAGDIYRPAAIKQLQVLGEQL 155 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + +A +A + A+ +DV++IDTAGRLH + LM + ++ V K Sbjct: 156 NVPVFTLGDQVSPVEIARQAIEHAKTNHLDVVLIDTAGRLHIDEALMDELKQIREVTK-- 213 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P +L V+DA TGQ+A+ E F++ TG+++TK+DG RGG + + P Sbjct: 214 ----PDEILLVVDAMTGQDAVNVAESFNSQLELTGVVLTKLDGDTRGGAALSVKAVTGKP 269 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F +GE ++ LEPF ++ I G D Sbjct: 270 IKFAAMGEKLDALEPFHPDRMASRILGMGD 299 >gi|7576789|gb|AAF63991.1| unknown in vivo-induced protein 134-21 [Pseudomonas aeruginosa] Length = 163 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 68/148 (45%), Positives = 101/148 (68%), Gaps = 3/148 (2%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYA-KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHR 110 L+ +D+GV IV+ L TKR A K+++ LY + E + +L P+ +P D + Sbjct: 17 LLTADVGVEATTLIVQNL-TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVARE 75 Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P+VILVVGVNGVGKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + Sbjct: 76 PYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVI 135 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLI 198 G+D+A++ ++A + A+A+ +DVLI Sbjct: 136 AQHTGADSASVIFDAVQAAKARGIDVLI 163 >gi|194336566|ref|YP_002018360.1| signal recognition particle protein [Pelodictyon phaeoclathratiforme BU-1] gi|194309043|gb|ACF43743.1| signal recognition particle protein [Pelodictyon phaeoclathratiforme BU-1] Length = 449 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 82/268 (30%), Positives = 138/268 (51%), Gaps = 12/268 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ VA+K+++++ K + V Q ++ V + + +++ KP N Sbjct: 38 LLGADVNYKVAKKLIDDIREKSLGEQVIKSVSPAQMIVKIVYDELTELMGGEQKPLNLSP 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 P VI+V G+ G GKTT KL+ ++ +G + ML A D +R AAIDQLK + Sbjct: 98 KKLPAVIMVAGLQGSGKTTFCAKLALRLKKSGKQPMLVAADVYRPAAIDQLKALGQQVDV 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 E DA A + + A++ DV+I+DTAGRL + ++MA + LK Sbjct: 158 PVFAIE-EQDAMKAALQGLEAARSAAKDVVIVDTAGRLQIDQVMMAEAESLKHALK---- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ GQ A+ + F+ G+++TK+DG +RGG + I + P+ Sbjct: 213 --PDELLFVVDSMMGQEAVNTAKAFNDRLDFDGVVLTKLDGDSRGGAALSIRQVVEKPIK 270 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ +GE ++DL+ F + I G D Sbjct: 271 FISIGEKVDDLDLFYPDRMAQRILGMGD 298 >gi|94970062|ref|YP_592110.1| signal recognition particle subunit FFH/SRP54 (srp54) [Candidatus Koribacter versatilis Ellin345] gi|94552112|gb|ABF42036.1| signal recognition particle subunit FFH/SRP54 (srp54) [Candidatus Koribacter versatilis Ellin345] Length = 454 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 89/275 (32%), Positives = 147/275 (53%), Gaps = 17/275 (6%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 ++ +++ +RE + L+ +D+ V +++V+ + K +DV ++V+ V + Sbjct: 22 LTPENMEEALRE-IRLALLEADVNFKVVKEVVDRIQYKALGEDVMTALSPAEQVVKIVRD 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + +L + + S P +IL+ G+ G GKTT GKL+ + + G + ML + D + Sbjct: 81 ELIAILGKDTAKVKF-ASQPPTIILMAGLQGSGKTTTSGKLAHWLKNGGHRPMLVSVDVY 139 Query: 151 RSAAIDQLKIWADRTSADFV---CSEIGSDAAA-LAYEAFKQAQAKKVDVLIIDTAGRLH 206 R AA +QLK+ A +A E +D LA EA ++A + ++LI+DTAGRLH Sbjct: 140 RPAAREQLKVVAQAINAKLYEGKVEEANTDTVVRLAKEARREAISNGCNILIVDTAGRLH 199 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + LM + + +L P +L V DA TGQ+A+ + FH TG+++TKM Sbjct: 200 IDDQLMDEMQHLKTLLN------PQEILFVADAMTGQDAVNSAKEFHDKLTLTGVVLTKM 253 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 DG ARGG + I P+ F+GVGE + LEPF Sbjct: 254 DGDARGGAALSIRQVTGQPIKFIGVGEKYDALEPF 288 >gi|218185264|gb|EEC67691.1| hypothetical protein OsI_35150 [Oryza sativa Indica Group] Length = 550 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 93/304 (30%), Positives = 152/304 (50%), Gaps = 13/304 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +LT G S KL+ G+ D+++ + + +R+ + L+ +D+ + V ++ V + K Sbjct: 74 QLTTGLESAWNKLR-GV-DVLTKENIVEPMRD-IRRALLEADVSLPVVRRFVSSISEKAL 130 Query: 76 AKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKL 131 D + R + +++H L+ L D P VIL+ G+ GVGKTTV KL Sbjct: 131 GSDLIRGVRPEQQLVKIVHDELVQLMGGEVSDLVFAKSGPTVILLAGLQGVGKTTVCAKL 190 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + G ML A D +R AAIDQL I ++ + A + A ++A+ Sbjct: 191 AFYLKKLGKSCMLVAADVYRPAAIDQLTILGEQVGVPVYSERTEAKPAQITKNAVEEAKR 250 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K +D +++DTAGRL + +M + ++ + + P VL V+DA TGQ A V Sbjct: 251 KNIDAIVMDTAGRLQIDKSMMVELKEVKKAVN------PTEVLLVVDAMTGQEAAALVTT 304 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G TG I+TK+DG +RGG + + P+ F+G GE + DLE F + + Sbjct: 305 FNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKFVGRGERMEDLELFYPDRMAQRVL 364 Query: 312 GCLD 315 G D Sbjct: 365 GMGD 368 >gi|116629442|ref|YP_814614.1| Signal recognition particle GTPase [Lactobacillus gasseri ATCC 33323] gi|311110910|ref|ZP_07712307.1| signal recognition particle protein [Lactobacillus gasseri MV-22] gi|116095024|gb|ABJ60176.1| signal recognition particle subunit FFH/SRP54 (srp54) [Lactobacillus gasseri ATCC 33323] gi|311066064|gb|EFQ46404.1| signal recognition particle protein [Lactobacillus gasseri MV-22] Length = 476 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 95/306 (31%), Positives = 156/306 (50%), Gaps = 20/306 (6%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F + S +L++ + ++ IS ++D RE + L+ +D+ V + ++++ + Sbjct: 3 FENLSERLQKALKNLTGKGKISEADINDASRE-IRLALLEADVNFKVVKDFIKKIKKEAL 61 Query: 76 AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K+V Q+++ V + + KM+ + N H P +I++VG+ G GKTT +GK Sbjct: 62 GKEVQESLNPGQQIIKIVDDELTKMMGEEAVSLNKS-QHIPTIIMMVGLQGTGKTTTVGK 120 Query: 131 LSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L+ M + + +L AGD +R AAIDQLK + + V SE D A + ++A Sbjct: 121 LANYLMKNEKARPLLIAGDIYRPAAIDQLKQIGQQLNVP-VYSEDNQDVAEIVKHGLEEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 K D ++IDTAGRL + LM + ++ V P + L V+DA TGQ A + Sbjct: 180 DKNKNDYVLIDTAGRLEIDEQLMDELKRVTAVAH------PDNTLLVVDAMTGQAATQVA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F+ TG+I+TK+DG RGG + I +P+ F G GE + DL F ++ Sbjct: 234 EGFNNDLDLTGIILTKLDGDTRGGAALSIRAVTGLPIIFTGQGEKLTDLSTFHPDRMASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|282899599|ref|ZP_06307563.1| Signal recognition particle protein [Cylindrospermopsis raciborskii CS-505] gi|281195478|gb|EFA70411.1| Signal recognition particle protein [Cylindrospermopsis raciborskii CS-505] Length = 480 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 92/295 (31%), Positives = 149/295 (50%), Gaps = 29/295 (9%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85 D IS + D +RE + L+ +D+ + V + + ++ TK +V +++ Sbjct: 20 DKISQSNIQDALRE-VRRALLEADVNLQVVKDFIADVETKAQGAEVISGVRPDQQFIKIV 78 Query: 86 YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 YD EL+ M +PL++ N + V+L+ G+ G GKTT KL+ + Sbjct: 79 YD--ELVQVMGEENVPLAEAQN-----QTTVVLMAGLQGTGKTTATAKLALHLRKTNRSC 131 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIID 200 +L A D +R AAIDQL + D E+GSDA +A + ++A+ + ++ +I+D Sbjct: 132 LLVATDIYRPAAIDQLVTLGKQI--DVPVFEMGSDADPVEIARQGVERARNEGINTVIVD 189 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL + +MA + ++ ++ P L V+DA TGQ A FH G TG Sbjct: 190 TAGRLQIDQDMMAELSRIKSTIE------PDETLLVVDAMTGQEAANLTRTFHEQIGITG 243 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I+TKMDG +RGG + + P+ F+GVGE + L+PF ++ I G D Sbjct: 244 AILTKMDGDSRGGAALSVRQISGAPIKFIGVGEKVEALQPFYPDRMASRILGMGD 298 >gi|258623026|ref|ZP_05718039.1| Signal recognition particle GTPase [Vibrio mimicus VM573] gi|258623816|ref|ZP_05718773.1| Signal recognition particle GTPase [Vibrio mimicus VM603] gi|258583939|gb|EEW08731.1| Signal recognition particle GTPase [Vibrio mimicus VM603] gi|258584639|gb|EEW09375.1| Signal recognition particle GTPase [Vibrio mimicus VM573] Length = 461 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 101/307 (32%), Positives = 155/307 (50%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E I + L ++ N + P VIL+ G+ G GKTT +G Sbjct: 60 VGVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KLSK + + K V++ + D +R AAI QL+ A+ DF S +A A Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DVLI+DTAGRL + +MA I + + + AP L V+DA TGQ+A Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEQMMAEIQALHKAI------APVETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+I+TK+DG ARGG + + P+ FLGVGE + LEPF ++ Sbjct: 233 AKAFGDALPLTGIILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRIAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|242240277|ref|YP_002988458.1| signal recognition particle protein [Dickeya dadantii Ech703] gi|242132334|gb|ACS86636.1| signal recognition particle protein [Dickeya dadantii Ech703] Length = 453 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 94/308 (30%), Positives = 156/308 (50%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL DD +++ L ++ L+ +D+ + V ++ + + + Sbjct: 2 FENLTDRLSRTLRNISGRGRLTDDNIKDTLREVRMALLEADVALPVVREFINRVKERAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 DV+ Q + V + + ++ N + P V+L+ G+ G GKTT + KL Sbjct: 62 HDVNKSLTPGQEFVRIVQNELVAAMGEENQALNL-AAQPPAVVLMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + KV++ + D +R AAI QL+ A+ DF S++ + +A + A+ Sbjct: 121 GKFLREKQKKKVLVVSADVYRPAAIRQLETLAESVGVDFFPSDVSEKPVNIVGQALQHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K DVL++DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 181 LKFYDVLLVDTAGRLHVDDAMMDEIRQV---------HAAINPVETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF + Sbjct: 232 TAKAFNEALPLTGVILTKIDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|311278432|ref|YP_003940663.1| signal recognition particle protein [Enterobacter cloacae SCF1] gi|308747627|gb|ADO47379.1| signal recognition particle protein [Enterobacter cloacae SCF1] Length = 453 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 116/212 (54%), Gaps = 13/212 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT +GKL K + + KV++ + D +R AAI QL+ A + Sbjct: 97 AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S++ + A K+A+ K DVL++DTAGRLH + +M I ++ Sbjct: 157 VDFFPSDVAQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQV-------- 208 Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 HA P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I Sbjct: 209 -HASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ FLGVGE + LEPF ++ I G D Sbjct: 268 KPIKFLGVGEKTDALEPFHPDRIASRILGMGD 299 >gi|194476608|ref|YP_002048787.1| signal recognition particle protein (SRP54) [Paulinella chromatophora] gi|171191615|gb|ACB42577.1| signal recognition particle protein (SRP54) [Paulinella chromatophora] Length = 481 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 87/305 (28%), Positives = 156/305 (51%), Gaps = 18/305 (5%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F S + +E + + I+ +++ +++ + LI +D+ + V ++ +EE+ +K Sbjct: 2 FDELSARFEEAVKSLKGLSAITENNVENALKQ-VRRALIEADVSLVVVKEFMEEVRSKSI 60 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +V Q+ + V E + +++ + P + SH V+L+ G+ G GKTT K Sbjct: 61 GIEVVRGIKPDQKFIQVVYEQLIEIMGANNTPLHKQ-SHTVTVVLMAGLQGAGKTTAAAK 119 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + + G KV++ A D +R AAIDQL + + + S +A ++A Sbjct: 120 LALYLKNQGEKVLMVAADVYRPAAIDQLFVLGKQIDVEVFTLNPESIPEDIAAAGLQKAI 179 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + D LI+DTAGRL ++ +M +M+R+ ++ P+ +L V+D+ GQ A Sbjct: 180 REGFDYLIVDTAGRLQIDTAMMQ---EMVRIRSAVN---PNEILLVVDSMIGQEAAELTR 233 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 FH G TG ++TK+DG ARGG + I P+ F+G GE + L+PF + ++ I Sbjct: 234 AFHEQIGITGAVLTKLDGDARGGAALSIRKVSGAPIKFIGTGEKVEALQPFHPERMASRI 293 Query: 311 TGCLD 315 G D Sbjct: 294 LGMGD 298 >gi|194333840|ref|YP_002015700.1| signal recognition particle protein [Prosthecochloris aestuarii DSM 271] gi|194311658|gb|ACF46053.1| signal recognition particle protein [Prosthecochloris aestuarii DSM 271] Length = 449 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 89/268 (33%), Positives = 141/268 (52%), Gaps = 12/268 (4%) Query: 53 LIRSDIGVAVAQKIVEEL----LTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V +K VE++ L ++ K VS Q ++ VS+ + +++ +KP N Sbjct: 38 LLGADVNYKVTKKFVEDVREKALGEQVVKSVSPAQMIVKIVSDELTELMGGENKPLNLAT 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 + P VI+V G+ G GKTT KL+K++ G +L A D +R AAI QLK D+ Sbjct: 98 NKLPAVIMVAGLQGSGKTTFCAKLAKRLKKNGKHPLLVAADVYRPAAIAQLKTMGDQVDV 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V S DA A + +A+ DV+I+DTAGRL + +MA + + L Sbjct: 158 P-VFSIDAQDALKAALDGVDEARKIGCDVVIVDTAGRLQVDEGMMAEAESLKKQL----- 211 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 +P +L V+DA GQ A+ ++F+ G+++TK+DG ARGG + I P+ Sbjct: 212 -SPDEILFVVDAMIGQEAVNTAKVFNERLDFDGVVLTKLDGDARGGAALSIKHVVDKPIK 270 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ VGE ++DL+ F + I G D Sbjct: 271 FMSVGEKVDDLDLFYPDRMAQRILGMGD 298 >gi|29376252|ref|NP_815406.1| signal recognition particle protein [Enterococcus faecalis V583] gi|227518889|ref|ZP_03948938.1| signal recognition particle protein [Enterococcus faecalis TX0104] gi|256762629|ref|ZP_05503209.1| signal recognition particle protein [Enterococcus faecalis T3] gi|256961798|ref|ZP_05565969.1| signal recognition particle protein [Enterococcus faecalis Merz96] gi|256964995|ref|ZP_05569166.1| signal recognition particle protein [Enterococcus faecalis HIP11704] gi|257419425|ref|ZP_05596419.1| signal recognition particle protein [Enterococcus faecalis T11] gi|293382861|ref|ZP_06628779.1| signal recognition particle protein [Enterococcus faecalis R712] gi|293389652|ref|ZP_06634107.1| signal recognition particle protein [Enterococcus faecalis S613] gi|307273091|ref|ZP_07554337.1| signal recognition particle protein [Enterococcus faecalis TX0855] gi|312907668|ref|ZP_07766659.1| signal recognition particle protein [Enterococcus faecalis DAPTO 512] gi|312910285|ref|ZP_07769132.1| signal recognition particle protein [Enterococcus faecalis DAPTO 516] gi|29343715|gb|AAO81476.1| signal recognition particle protein [Enterococcus faecalis V583] gi|227073680|gb|EEI11643.1| signal recognition particle protein [Enterococcus faecalis TX0104] gi|256683880|gb|EEU23575.1| signal recognition particle protein [Enterococcus faecalis T3] gi|256952294|gb|EEU68926.1| signal recognition particle protein [Enterococcus faecalis Merz96] gi|256955491|gb|EEU72123.1| signal recognition particle protein [Enterococcus faecalis HIP11704] gi|257161253|gb|EEU91213.1| signal recognition particle protein [Enterococcus faecalis T11] gi|291079526|gb|EFE16890.1| signal recognition particle protein [Enterococcus faecalis R712] gi|291081045|gb|EFE18008.1| signal recognition particle protein [Enterococcus faecalis S613] gi|306510076|gb|EFM79100.1| signal recognition particle protein [Enterococcus faecalis TX0855] gi|310626696|gb|EFQ09979.1| signal recognition particle protein [Enterococcus faecalis DAPTO 512] gi|311289558|gb|EFQ68114.1| signal recognition particle protein [Enterococcus faecalis DAPTO 516] gi|315576091|gb|EFU88282.1| signal recognition particle protein [Enterococcus faecalis TX0309B] gi|315580665|gb|EFU92856.1| signal recognition particle protein [Enterococcus faecalis TX0309A] gi|327535264|gb|AEA94098.1| signal recognition particle protein [Enterococcus faecalis OG1RF] Length = 472 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 98/309 (31%), Positives = 163/309 (52%), Gaps = 23/309 (7%) Query: 20 GFASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75 F S + +L++ ++ I ++ + V+E + ++ L+ +D+ + V + + + + Sbjct: 2 AFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERAV 61 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129 +V Q+++ V E + K L S+ + S + P VI++ G+ G GKTT G Sbjct: 62 GVEVLESLSPAQQIVKIVDEELTKTLG--SETVELNKSPKIPTVIMMTGLQGAGKTTFTG 119 Query: 130 KLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAF 186 KL+K M + +L AGD +R AAIDQLK+ + + ++G+DA + + Sbjct: 120 KLAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQL--EVPVFDMGTDANPVEIVRQGL 177 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A+ KK D ++IDTAGRLH + LM + K I+ L P+ +L V+DA TGQ+A+ Sbjct: 178 ALAKEKKNDYVLIDTAGRLHIDEALMDEL-KQIKEL-----ADPNEILLVVDAMTGQDAV 231 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ G TG+++TKMDG RGG + I P+ F+G GE + DLE F Sbjct: 232 NVADSFNEQLGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRM 291 Query: 307 SAVITGCLD 315 S+ I G D Sbjct: 292 SSRILGMGD 300 >gi|77359889|ref|YP_339464.1| 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA [Pseudoalteromonas haloplanktis TAC125] gi|76874800|emb|CAI86021.1| 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA [Pseudoalteromonas haloplanktis TAC125] Length = 459 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 94/307 (30%), Positives = 158/307 (51%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + +L + + +I RL ++ +++ L ++ + +D+ + V + V+++ K A Sbjct: 2 FENLQERLGKTLKNISGRGRLTEENIKDTLREVRMAFLEADVALPVVRDFVKQV--KERA 59 Query: 77 KDVSVQRVLYD-------VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L V E + K + ++ + + + P V+++ G+ G GKTT + Sbjct: 60 VGVEVTKSLSPGQVFVKIVREELEKAMGEANEELSLN-AQPPAVVMMAGLQGAGKTTSVA 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+K + + K V++ + D +R AAI QL+ A DF S+I +A A Sbjct: 119 KLAKFLKERKKKSVLVVSADVYRPAAIKQLETLAAEVGVDFFPSDISQKPVDIATAAISH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K +DV+++DTAGRLH +S +M I + + + P L V+DA TGQ+A Sbjct: 179 AKKKFIDVVLVDTAGRLHVDSDMMDEIKNLHKAIN------PIETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+I+TK DG ARGG + I P+ F+GVGE I+ LEPF ++ Sbjct: 233 AKAFDEALPLTGVILTKTDGDARGGAALSIRHITGKPIKFMGVGERIDALEPFHPDRIAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|323341682|ref|ZP_08081915.1| signal recognition particle protein [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464107|gb|EFY09300.1| signal recognition particle protein [Erysipelothrix rhusiopathiae ATCC 19414] Length = 431 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 91/296 (30%), Positives = 152/296 (51%), Gaps = 29/296 (9%) Query: 27 KLKE-GITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSV 81 KL E ITD +S R+ L+ +D+ + V +++E E L + +DV Sbjct: 22 KLSEKNITDALSEIRIS----------LLEADVSLDVINELLEHTRSEALGMKVTRDVEP 71 Query: 82 QRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139 ++ ++++ L+ + + DF+ +P ++++VG+ G GKTT I K++ K++ G Sbjct: 72 SQMFV---KIVNDKLIEILGEEKSELDFNQKPGILMMVGLQGSGKTTTIAKIANKLNKEG 128 Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199 KV+L A D R AAI+QLKI + + E S + A A K D+++I Sbjct: 129 KKVLLVAADLARPAAIEQLKILGTQIGVEVFAQE-NSTPVEVVKNAL--AHGKDFDLILI 185 Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 DTAGRL + LM + + + K P +L +DA +GQ+ + F T Sbjct: 186 DTAGRLQIDDALMQQLVDIQALTK------PDEILLSVDAMSGQDVIHVANGFKEKLNIT 239 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 GL+ TK DG +RGG ++ + ++PV F+GVGEGI++L+ F ++ I G D Sbjct: 240 GLVATKFDGDSRGGSILSVRYMTQVPVKFVGVGEGIDELDEFYPDRTASRILGMGD 295 >gi|225850967|ref|YP_002731201.1| signal recognition particle protein [Persephonella marina EX-H1] gi|225645352|gb|ACO03538.1| signal recognition particle protein [Persephonella marina EX-H1] Length = 442 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 100/311 (32%), Positives = 156/311 (50%), Gaps = 30/311 (9%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLT 72 LT+ F+ KLK +RLD+ V E L+D+ LI +D+ + V + +++L Sbjct: 5 LTERFSGIVEKLK-------RVKRLDEKTVEEALKDIRRALIEADVNIEVIKSFLDDLKQ 57 Query: 73 KRYAKDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 K ++V +V +++YD I PL + P VI++VG+ G GK Sbjct: 58 KLVGQEVIKGLNAGETVIKLIYDEVLNILGEEAPLQRS-----EKPPTVIMLVGLQGTGK 112 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT GKL+K + G KV L + D R AA QL A E DA L + Sbjct: 113 TTTAGKLAKWLKSKGYKVGLVSTDVRRPAAGKQLCTLAKTIDVPCFIDEEEKDAVRLTEK 172 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 ++A+ + +I+DTAGRLH + LM +++ + ++++P +L V DA GQ+ Sbjct: 173 VIQKAKEAGLSHIILDTAGRLHIDQELM---DELVHIKEKVNPS---EILYVADAMQGQD 226 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ E FH G TG+I+TK+DG A+GG + + +P+ F+GVGE I D + F Sbjct: 227 AISTAEEFHNRVGLTGVILTKLDGDAKGGIALSVRKVIGVPIKFIGVGEKIEDFQQFHPD 286 Query: 305 DFSAVITGCLD 315 + I G D Sbjct: 287 RIAQRILGLGD 297 >gi|94987017|ref|YP_594950.1| Signal renition particle GTPase [Lawsonia intracellularis PHE/MN1-00] gi|94731266|emb|CAJ54629.1| Signal renition particle GTPase [Lawsonia intracellularis PHE/MN1-00] Length = 504 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 91/283 (32%), Positives = 146/283 (51%), Gaps = 17/283 (6%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI---HKM 95 +D +R+ L ++ L+ +D+ V +K +E + K + ++++ L + I H+ Sbjct: 24 EDNIRDGLREVRLALLEADVNFNVVKKFIEHVKEKVVGQ--AIEKHLTPAQQFIKVFHEE 81 Query: 96 LMPL--SKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 L+ L K D +H P VI++VG+ G GKTT GKL+ + GL+ L D +R Sbjct: 82 LVNLLGGKSTKLDVTHFPLSVIMLVGLQGSGKTTSTGKLASLLQSQGLRPYLVPVDIYRP 141 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL+ A + + S + A +A+ K+ V+++DTAGRLH + LM Sbjct: 142 AAIEQLQTLATQLNIPCFASNAAMKPLDIINAALHEAKEKEYTVVLLDTAGRLHIDEPLM 201 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + + +L H P +L V DA TGQ+ + E F+ TG I+TKMDG ARG Sbjct: 202 QELTDI-----KLVAH-PQEILFVADAMTGQDVVTVAEEFNKKLSLTGAILTKMDGDARG 255 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + I + +PV ++G GE ++D E F + I G D Sbjct: 256 GAALSICSSTGVPVKYVGTGEKLSDFEVFHPDRIAGRILGMGD 298 >gi|113955128|ref|YP_729980.1| signal recognition particle protein [Synechococcus sp. CC9311] gi|113882479|gb|ABI47437.1| signal recognition particle protein [Synechococcus sp. CC9311] Length = 493 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 88/287 (30%), Positives = 143/287 (49%), Gaps = 13/287 (4%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--EL 91 D IS ++ G +E+ L+ +D+ + V + V E+ K +V V+ V D ++ Sbjct: 20 DTISDTNVE-GALKEVRRALLEADVSLPVVKDFVSEVREKAVGAEV-VRGVTPDQKFIQV 77 Query: 92 IHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 +H+ L+ + N + P V+L+ G+ G GKTT KL + D G K ++ D Sbjct: 78 VHEQLVDVMGGGNAPLAQADQAPTVVLMAGLQGAGKTTATAKLGLHLKDQGRKALMVGAD 137 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 +R AAI+QLK + D I + +A +A+ + D L++DTAGRL + Sbjct: 138 VYRPAAIEQLKTLGGQIGVDVFSLGIEAKPEDIAAAGLAKAKEEGYDTLLVDTAGRLQID 197 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 S +M +M+R+ + P VL V+D+ GQ A FH G TG ++TK+DG Sbjct: 198 SEMME---EMVRIRSAVQ---PDEVLLVVDSMIGQEAAELTRAFHDQVGITGAVLTKLDG 251 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + I P+ F+G GE + L+PF + ++ I G D Sbjct: 252 DSRGGAALSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRILGMGD 298 >gi|78485342|ref|YP_391267.1| signal recognition particle protein [Thiomicrospira crunogena XCL-2] gi|78363628|gb|ABB41593.1| signal recognition particle subunit FFH/SRP54 (srp54) [Thiomicrospira crunogena XCL-2] Length = 459 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 159/305 (52%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + I RL + +++ L D+ L+ +D+ + V + ++++ + Sbjct: 2 FDNLSDRLAKSFKTITGQGRLTESNIKDALRDVRRALLEADVALPVVKSFIDKVQERAIG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++VS Q + V E + +++ ++P N++ P +I+V G+ G GKTT +GKL Sbjct: 62 QEVSTSLNPGQAFIKIVREQLTEIMGQEAEPLNFNVEP-PAIIMVAGLQGAGKTTSVGKL 120 Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 ++ + + KVM+ + D +R AAI QL+ A++ F S D +A +A +A+ Sbjct: 121 ARWLKEREKKKVMVVSADVYRPAAIKQLETLAEQVDVSFYPSTADEDPVDIAKKAHAEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + VDVLI+DTAGRLH + +M + ++ +K P L V+DA TGQ+A + Sbjct: 181 KQFVDVLILDTAGRLHVDEDMMQEVQRLHTAIK------PVETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK DG ARGG + I P+ F+G GE LE F + I Sbjct: 235 AFNDALPLTGVILTKTDGDARGGAALSIREITGKPIKFIGAGEKTEALESFHPDRMAGRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|119386585|ref|YP_917640.1| signal recognition particle protein [Paracoccus denitrificans PD1222] gi|119377180|gb|ABL71944.1| signal recognition particle subunit FFH/SRP54 (srp54) [Paracoccus denitrificans PD1222] Length = 498 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 89/256 (34%), Positives = 136/256 (53%), Gaps = 10/256 (3%) Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 AV QK +TK V ++++D ELI K+L P + P IL+VG+ Sbjct: 54 AVTQKATGAAVTKSITPGQQVVKIVHD--ELI-KVLQGEGAPDALRIDNPPAPILMVGLQ 110 Query: 121 GVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 G GKTT KL+K++ D K V++A+ DT R AA++QL I + D + G +A Sbjct: 111 GSGKTTTTAKLAKRLKDREKKRVLMASLDTNRPAAMEQLAILGQQIGVDTLPIVPGENAV 170 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 +A A +QA DV ++DTAGRLH + +LM + + +R D +P L V+D Sbjct: 171 QIAKRAKQQATLGGYDVYMLDTAGRLHIDEVLMDEV-QAVR-----DVASPRETLLVVDG 224 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQ+A+ F G +G+++T+MDG RGG + + P+ F+G+GE ++ LE Sbjct: 225 LTGQDAVNVAAEFDGKVGISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDALE 284 Query: 300 PFVAKDFSAVITGCLD 315 F A+ + I G D Sbjct: 285 AFDAQRIAGRILGMGD 300 >gi|308187876|ref|YP_003932007.1| Signal recognition 54 kDa protein (SRP54) [Pantoea vagans C9-1] gi|308058386|gb|ADO10558.1| Signal recognition 54 kDa protein (SRP54) [Pantoea vagans C9-1] Length = 453 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 93/306 (30%), Positives = 158/306 (51%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL ++ ++E L ++ L+ +D+ + V + + + Sbjct: 2 FDNLTDRLSQTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKESAVG 61 Query: 77 KDVSVQRVLYDVSELI----HKMLMPLSKPFN-WDFSHRPH-VILVVGVNGVGKTTVIGK 130 DV+ + L E I ++++ + N D + +P V+L+ G+ G GKTT + K Sbjct: 62 HDVN--KSLTPGQEFIKIVRNELVAAMGAENNALDLAAQPPAVVLMAGLQGAGKTTSVAK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + KV++ + D +R AAI QL+ A + DF S++ + A ++A Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVGVDFCPSDLSQKPVDIVNNALREA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVL++DTAGRLH + +M I ++ +K P L V+DA TGQ+A Sbjct: 180 RLKFYDVLLVDTAGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+I+TK+DG ARGG + I P+ F+GVGE LEPF ++ Sbjct: 234 KAFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFMGVGEKTEALEPFYPDRIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|284162145|ref|YP_003400768.1| GTP-binding signal recognition particle SRP54 G-domain protein [Archaeoglobus profundus DSM 5631] gi|284012142|gb|ADB58095.1| GTP-binding signal recognition particle SRP54 G-domain protein [Archaeoglobus profundus DSM 5631] Length = 435 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 98/305 (32%), Positives = 149/305 (48%), Gaps = 38/305 (12%) Query: 28 LKEGITDIISSRRLDDGVREEL----EDLLIRSDIGV-------------AVAQKIVEEL 70 LKE + I S +D + EE+ + LI++D+ V A++++++E L Sbjct: 6 LKEAVRKITRSATVDKALVEEIVKDIQRALIKADVNVRHVKEISDAIKKRALSEEVLEGL 65 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + + + + +L + E + +PL K I++VG+ G GKTT K Sbjct: 66 NPREHIIKIVYEELLKGIGEGLE---IPLKK----------SKIMLVGLQGSGKTTTTAK 112 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K D GL+ + DT+R AA DQLK A+ F DA + A K+ Sbjct: 113 LAKYFKDKGLRTAVVCADTWRPAAYDQLKQLAENYGIAFYGERESKDAVKIVENALKKL- 171 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K D++IIDTAGR +++ I +MI + K +P L VLDA GQ A +Q + Sbjct: 172 -KDYDMIIIDTAGR---HALEKELIDEMIEIAKVANPDYK---LLVLDAAIGQLASKQAK 224 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 FH G G+I+TK DGTA+GGG + IP+ F+G GE + D E F F + + Sbjct: 225 AFHEAIGIDGIIITKFDGTAKGGGALSAAREIGIPIAFIGTGEKVEDFERFDPAGFVSRL 284 Query: 311 TGCLD 315 G D Sbjct: 285 LGMGD 289 >gi|260767210|ref|ZP_05876152.1| signal recognition particle subunit Ffh SRP54 [Vibrio furnissii CIP 102972] gi|260617818|gb|EEX42995.1| signal recognition particle subunit Ffh SRP54 [Vibrio furnissii CIP 102972] gi|315181159|gb|ADT88073.1| signal recognition particle protein [Vibrio furnissii NCTC 11218] Length = 459 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 100/306 (32%), Positives = 153/306 (50%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D ++E L ++ L+ +D+ + V ++ V + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFVSRV--KEKA 59 Query: 77 KDVSVQRVLYDVSELIH------KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 V V + L E I + +M S + P VIL+ G+ G GKTT +GK Sbjct: 60 VGVEVSKSLTPGQEFIKIVRGELEAVMGESNEALNLAAQPPAVILMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 LSK + + K V++ + D +R AAI QL+ A+ DF S +A A A Sbjct: 120 LSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLDVDFFPSSPDQKPIDIANAAIDHA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVLI+DTAGRL + +M I + + + P L V+DA TGQ+A Sbjct: 180 KKKFFDVLIVDTAGRLAIDEQMMGEIQDLHKAIN------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK+DG ARGG + + P+ FLGVGE + LEPF ++ Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRYITGKPIKFLGVGEKTDALEPFHPDRVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|299117528|emb|CBN75372.1| SRP54, GTPase subunit of the signal recognition particle (Partial) [Ectocarpus siliculosus] Length = 507 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 80/236 (33%), Positives = 121/236 (51%), Gaps = 10/236 (4%) Query: 80 SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139 S+Q+ + D EL ML P + P+ R +V++ VG+ G GKTT I K + G Sbjct: 84 SIQKAVVD--ELTG-MLDPKTAPYKMR-KGRSNVVMFVGLQGAGKTTTIAKFAHYWQRKG 139 Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199 KV + DTFR+ A DQLK A + F S +D +A E +Q + +K +V+I+ Sbjct: 140 WKVAMVCADTFRAGAFDQLKQNATKLRCPFYGSYSEADPVRIADEGVQQFKQEKYEVIIV 199 Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 DT+GR L + ++ ++ P + ++DAT GQ Q + FH Sbjct: 200 DTSGRHKQEDALFDEMKEIQEAVQ------PDNTTLIMDATQGQAVFDQAKAFHEAVAVG 253 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V P+ FLG GE +DLE F A+ F + + G D Sbjct: 254 SVIITKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEAFDAQSFVSRLLGFGD 309 >gi|255020743|ref|ZP_05292802.1| Signal recognition particle, subunit Ffh SRP54 [Acidithiobacillus caldus ATCC 51756] gi|254969805|gb|EET27308.1| Signal recognition particle, subunit Ffh SRP54 [Acidithiobacillus caldus ATCC 51756] Length = 458 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 97/305 (31%), Positives = 158/305 (51%), Gaps = 16/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + KL + ++ RL +D +R+ L D+ L+ +D+ + V + ++ + + Sbjct: 2 FDNLTQKLSQSFRNLRGQGRLSEDNIRDALRDVRMALLEADVALPVVKDFIQAVRERALG 61 Query: 77 KDVSVQRVLYDVS-ELIHKMLMPLSKPFN--WDFSHRPH-VILVVGVNGVGKTTVIGKLS 132 ++V+ V +++H L+ L N D RP VIL+ G+ G GKTT KL+ Sbjct: 62 EEVTRSLTPGQVFIKIVHDELVALMGATNDRLDLQVRPPAVILLAGLQGSGKTTTAAKLA 121 Query: 133 KKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +++ K V+L + D +R AA+DQL+ + S+ +A +A +AQ Sbjct: 122 LWLTEREKKRVLLVSTDVYRPAAMDQLRNLGRDIGVEVFPSDPSQAPLTIARDALAEAQR 181 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K +DVLI+DTAGRLH + +M + V++ P +L V+DA TGQ+A+ + Sbjct: 182 KVMDVLIVDTAGRLHVDEEMMREAKDLAAVVQ------PAELLFVVDAMTGQDAVNTAKA 235 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND-LEPFVAKDFSAVI 310 F A TG+I+TK DG ARGG + I P+ F+GVGE + LEPF ++ I Sbjct: 236 FDAALPLTGVILTKADGDARGGAALSIRAVTGKPIKFIGVGEKVRKGLEPFHPDRMASRI 295 Query: 311 TGCLD 315 G D Sbjct: 296 LGMGD 300 >gi|121718228|ref|XP_001276141.1| signal recognition particle protein SRP54 [Aspergillus clavatus NRRL 1] gi|119404339|gb|EAW14715.1| signal recognition particle protein SRP54 [Aspergillus clavatus NRRL 1] Length = 524 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 145/301 (48%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ + D+ S LD D + +E+ L+ +D+ V + Q + + + L Sbjct: 9 RINAAVNDLTRSNNLDEKAFDDMIKEICAALLSADVNVRLVQTLRKSIKSSVNFSSLPPA 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D EL+ ++ P ++PF R +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--ELV-ALVNPHAEPFRPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G K L DTFR+ A DQLK A + + S +D A +A E + + ++ Sbjct: 125 YQTRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAAEGVAKFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 +++I+DT+GR L + ++ + P + VLD+T GQ A Q F A Sbjct: 185 EIIIVDTSGRHKQEEDLFTEMTQIQNAV------TPDQTILVLDSTIGQAAEAQSAAFKA 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V P+ FLG GE + DLE F K F + G Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHLMDLERFEPKAFVQKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|323489558|ref|ZP_08094785.1| signal recognition particle-like (SRP) component [Planococcus donghaensis MPA1U2] gi|323396689|gb|EGA89508.1| signal recognition particle-like (SRP) component [Planococcus donghaensis MPA1U2] Length = 452 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 162/305 (53%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S +L+ +T I ++++ V+E + ++ LI +D+ + V ++ V+++ + Sbjct: 3 FEGLSERLQGTMTKIKGKGKVNEADVKEMMREVRFALIEADVNLKVVKEFVKKISERAIG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q+V+ V + + +++ + + + +P VI++VG+ G GKTT GKL Sbjct: 63 QDVMDSLTPGQQVVKIVKDELTELMGGEERKIEFS-TKQPTVIMMVGLQGAGKTTTSGKL 121 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 + + K +L A D +R AAI QL+ + S +A +A + A+ Sbjct: 122 ANLLRRKHNRKPLLVAADVYRPAAIQQLETIGKQLSLPVFSKGTDMSPVEIARQAIEHAK 181 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +D +IIDTAGRLH + LM + K IR LK P + V+D+ TGQ+A+ + Sbjct: 182 AEHLDTVIIDTAGRLHVDEALMQEL-KDIRALKE-----PDEIFLVVDSMTGQDAVNVAQ 235 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TG+++TK+DG RGG + I + P+ F+G+GE ++ LE F + ++ I Sbjct: 236 NFDEAIGITGVVLTKLDGDTRGGAALSIRSVTQKPIKFVGMGEKMDALEAFHPERMASRI 295 Query: 311 TGCLD 315 G D Sbjct: 296 LGMGD 300 >gi|332799152|ref|YP_004460651.1| signal recognition particle protein [Tepidanaerobacter sp. Re1] gi|332696887|gb|AEE91344.1| signal recognition particle protein [Tepidanaerobacter sp. Re1] Length = 445 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 87/269 (32%), Positives = 145/269 (53%), Gaps = 16/269 (5%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + ++ ++ + ++V Q+V+ V+E + ++ S DF Sbjct: 39 LLEADVNFKVVKDLISKITERAIGQEVMESLTPAQQVIKIVNEELTSLMG--STQSKVDF 96 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S +I++VG+ G GKTT GKL K +S G K +L A D +R AAI QLKI ++ Sbjct: 97 SKEITIIMLVGLQGSGKTTTAGKLGKLLSKNGKKPLLVAADIYRPAAITQLKIVGEKVGL 156 Query: 168 D-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 F + D ++ + A+ DV+IIDTAGRLH + LM +++ + +D Sbjct: 157 PVFTMGQ--QDPVDISKASVDYAKKHNHDVVIIDTAGRLHVDDDLM---NELVNISHAVD 211 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P +L V+D+ TGQ+A+ E F+ TGLI+TK+DG +RGG + + P+ Sbjct: 212 PS---EILLVVDSMTGQDAVNVAEEFNNRLQLTGLILTKLDGDSRGGAALSVKAVTGCPI 268 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ++G+GE ++DLE F + ++ I G D Sbjct: 269 KYVGMGEKLDDLEIFHPERMASRILGMGD 297 >gi|260941516|ref|XP_002614924.1| hypothetical protein CLUG_04939 [Clavispora lusitaniae ATCC 42720] gi|238851347|gb|EEQ40811.1| hypothetical protein CLUG_04939 [Clavispora lusitaniae ATCC 42720] Length = 569 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 74/204 (36%), Positives = 110/204 (53%), Gaps = 6/204 (2%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 HVI+ VG+ G GKTT KL+ G KV L DTFR+ A DQLK A +++ F Sbjct: 140 HVIMFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNAIKSNIPFYG 199 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 S + +D +AYE K+ + K D++I+DT+GR L +M+++ + + P Sbjct: 200 SYLETDPVKVAYEGVKKFKEDKFDIIIVDTSGRHKQEQSL---FNEMVQISEAVQ---PT 253 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 + V+DA+ GQ A Q + F + +I+TKMDG A+GGG I V + P+ F+G Sbjct: 254 QTIMVMDASIGQAAEGQAKAFKESSNFGSIILTKMDGHAKGGGAISAVAATETPIVFIGT 313 Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315 GE + D E F F + + G D Sbjct: 314 GEHVGDFEVFKPSTFISKLLGIGD 337 >gi|154285458|ref|XP_001543524.1| hypothetical protein HCAG_00570 [Ajellomyces capsulatus NAm1] gi|150407165|gb|EDN02706.1| hypothetical protein HCAG_00570 [Ajellomyces capsulatus NAm1] Length = 353 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 88/292 (30%), Positives = 142/292 (48%), Gaps = 22/292 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ + D+ S +D D + +E+ L+ +D+ V + Q + + + L Sbjct: 9 RINAAVNDLTRSNNVDAQAFDAMIKEICAALLSADVNVRLVQSLRKSIKAAVPFSSLPPA 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D +L+ ++ P ++PF R +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKTVFD--QLV-ALVDPHAEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G + L DTFR+ A DQLK A + + S +D A +A E + + ++ Sbjct: 125 YQTRGFRAALVCADTFRAGAFDQLKQNATKAKIPYFGSLTQTDPAVVAAEGVAKFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D++I+DT+GR L + ++ ++ P + VLD T GQ A Q F A Sbjct: 185 DIIIVDTSGRHKQEEDLFVEMTQIQTAIQ------PDQTILVLDGTIGQAAESQSAAFKA 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 A +I+TK DG A GGG I V P+ FLG GE + DLE F K F Sbjct: 239 AADFGAIIITKTDGNAAGGGAISAVAATHTPIIFLGTGEHMLDLERFSPKPF 290 >gi|310814616|ref|YP_003962580.1| signal recognition particle protein [Ketogulonicigenium vulgare Y25] gi|308753351|gb|ADO41280.1| signal recognition particle protein [Ketogulonicigenium vulgare Y25] Length = 501 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 91/256 (35%), Positives = 135/256 (52%), Gaps = 10/256 (3%) Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 AV++K + +TK V ++++D ELI ML + P P IL+VG+ Sbjct: 54 AVSKKATGQAVTKSITPGQQVVKIVHD--ELIA-MLAGDTDPGVLKIDSPPAPILMVGLQ 110 Query: 121 GVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 G GKTT KL++++ D G +V+LA+ DT R AA++QL I + D + G D Sbjct: 111 GSGKTTTTAKLARRLKDREGKRVLLASLDTNRPAAMEQLAILGTQIGVDTLPIVKGEDPI 170 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+A A QA DV I+DTAGRLH ++ L+A + V+ +P L V+D Sbjct: 171 AIAKRAKTQASLGGYDVYILDTAGRLHIDAELIAQAAAVRDVV------SPRETLLVVDG 224 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQ+A+ F A G TG+++T+MDG RGG + + P+ F+G+GE + LE Sbjct: 225 LTGQDAVNVATEFDAKIGVTGVVLTRMDGDGRGGAALSMRAITGKPIRFIGLGEKTDALE 284 Query: 300 PFVAKDFSAVITGCLD 315 F A + I G D Sbjct: 285 VFDANRIAGRILGMGD 300 >gi|283780035|ref|YP_003370790.1| signal recognition particle protein [Pirellula staleyi DSM 6068] gi|283438488|gb|ADB16930.1| signal recognition particle protein [Pirellula staleyi DSM 6068] Length = 491 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 99/305 (32%), Positives = 148/305 (48%), Gaps = 18/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREEL---EDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S LK + + RL + +RE L E L+ +D+G+ V + + + K Sbjct: 2 FESLQNGLKSALKTLQGKARLTESNMREGLKLVEQSLLEADVGLDVVRDFMGRVTEKAVG 61 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + V Q+V+ V + + +L ++P ++ ++ G+ G GKTT GKL Sbjct: 62 EKVLLALDPTQQVVGIVRDELITLLGGPAEP-TIKLKAGLNIFMLCGLQGSGKTTTCGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 S + + VML A D R AAI+QL I + D + EA ++A+ Sbjct: 121 STLLMKSKQSVMLCAADLQRPAAIEQLHIIGKQLGVPVFSKPGEQDPVKVCQEAVEEAKK 180 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVE 250 K V VLI+DTAGRL + LMA LKR+D P V V+D TGQ+A+R Sbjct: 181 KDVTVLILDTAGRLAIDEELMA-------QLKRIDNRVEPDQVFLVVDGMTGQDAVRSAG 233 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ GLIMTK+DG RGG L+ + +P+ F+G GE ++ LEPF + + I Sbjct: 234 AFNDALELDGLIMTKLDGDTRGGALLSVRQVTGVPIKFIGTGEHLDALEPFRPEGMAGRI 293 Query: 311 TGCLD 315 G D Sbjct: 294 LGLGD 298 >gi|254974797|ref|ZP_05271269.1| signal recognition particle protein [Clostridium difficile QCD-66c26] gi|255092185|ref|ZP_05321663.1| signal recognition particle protein [Clostridium difficile CIP 107932] gi|260682859|ref|YP_003214144.1| signal recognition particle protein [Clostridium difficile CD196] gi|260209022|emb|CBA62118.1| signal recognition particle protein [Clostridium difficile CD196] Length = 452 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 112/208 (53%), Gaps = 6/208 (2%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P ++++VG+ G GKTT GKL G K +L A D +R AAI QL++ ++ Sbjct: 98 SKPPTILMMVGLQGAGKTTTAGKLGGYFKKQGKKPLLVACDIYRPAAIKQLQVVGEKLDI 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + +A A D++IIDTAGRLH + +LMA + + +K Sbjct: 158 PVFNMGDKENPVNIAKAGLSHAIKNANDLVIIDTAGRLHIDEVLMAELKSIKSEVK---- 213 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 PH +L V+D+ TGQ+A+ E F+ G G+++TK+DG RGG + I + P+ Sbjct: 214 --PHEILLVVDSMTGQDAVNVAESFNEALGVDGVVLTKLDGDTRGGAALSIRAVTQKPIK 271 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++D+EPF ++ I G D Sbjct: 272 FMGMGEKLDDIEPFHPDRMASRILGMGD 299 >gi|313896220|ref|ZP_07829773.1| signal recognition particle protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312975019|gb|EFR40481.1| signal recognition particle protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 458 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 92/280 (32%), Positives = 147/280 (52%), Gaps = 14/280 (5%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKM 95 ++D +RE + L+ +D+ V + V+ + + ++V + Q V+ V E + ++ Sbjct: 28 VNDAMRE-VRMALLEADVNFKVVKDFVKRVKERAVGQEVLDTLTAAQAVIKIVDEELTEL 86 Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 + N + P VI++VG+ G GKTT GKL+ + G + +L A D +R AAI Sbjct: 87 MGGTESRLNIS-PNPPTVIMLVGLQGSGKTTSAGKLALMLKKQGKRPLLVADDIYRPAAI 145 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 QL++ ++ A V S+ DA A+A + + A DV+IIDTAGRL + LM + Sbjct: 146 KQLEVIGEKVGAP-VFSQGQEDAVAIARASIAYSAAHANDVVIIDTAGRLQIDETLMQEL 204 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 + ++ PH +L V+DA TGQ A+ F A G G++MTK+DG ARGG Sbjct: 205 RDIKAAVQ------PHEILLVVDAMTGQEAVNVAAAFDASLGLDGIVMTKLDGDARGGAA 258 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I PV F+G+GE ++ LE F ++ I G D Sbjct: 259 LSIKAVTGRPVKFVGMGEKLDPLEVFHPDRMASRILGMGD 298 >gi|255313924|ref|ZP_05355507.1| signal recognition particle protein [Clostridium difficile QCD-76w55] gi|255516603|ref|ZP_05384279.1| signal recognition particle protein [Clostridium difficile QCD-97b34] gi|255649703|ref|ZP_05396605.1| signal recognition particle protein [Clostridium difficile QCD-37x79] gi|260686457|ref|YP_003217590.1| signal recognition particle protein [Clostridium difficile R20291] gi|260212473|emb|CBE03380.1| signal recognition particle protein [Clostridium difficile R20291] Length = 450 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 112/208 (53%), Gaps = 6/208 (2%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P ++++VG+ G GKTT GKL G K +L A D +R AAI QL++ ++ Sbjct: 98 SKPPTILMMVGLQGAGKTTTAGKLGGYFKKQGKKPLLVACDIYRPAAIKQLQVVGEKLDI 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + +A A D++IIDTAGRLH + +LMA + + +K Sbjct: 158 PVFNMGDKENPVNIAKAGLSHAIKNANDLVIIDTAGRLHIDEVLMAELKSIKSEVK---- 213 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 PH +L V+D+ TGQ+A+ E F+ G G+++TK+DG RGG + I + P+ Sbjct: 214 --PHEILLVVDSMTGQDAVNVAESFNEALGVDGVVLTKLDGDTRGGAALSIRAVTQKPIK 271 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++D+EPF ++ I G D Sbjct: 272 FMGMGEKLDDIEPFHPDRMASRILGMGD 299 >gi|70984902|ref|XP_747957.1| signal recognition particle protein SRP54 [Aspergillus fumigatus Af293] gi|66845585|gb|EAL85919.1| signal recognition particle protein SRP54 [Aspergillus fumigatus Af293] gi|159126118|gb|EDP51234.1| signal recognition particle protein SRP54 [Aspergillus fumigatus A1163] Length = 522 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 93/301 (30%), Positives = 145/301 (48%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ + D+ S LD D + +E+ L+ +D+ V + Q + + + L Sbjct: 9 RINAAVNDLTRSSNLDEKAFDDMLKEICAALLSADVNVRLVQTLRKSIKSSVNFSSLPPA 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D EL+ ++ P ++PF R +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--ELV-ALVDPHAEPFRPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G K L DTFR+ A DQLK A + + S +D A +A E + + ++ Sbjct: 125 YQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAAEGVAKFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 +V+I+DT+GR L + ++ + P + VLD+T GQ A Q F A Sbjct: 185 EVIIVDTSGRHKQEEELFTEMTQIQNAV------TPDQTILVLDSTIGQAAEAQSAAFKA 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V P+ FLG GE + DLE F K F + G Sbjct: 239 TANFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHLMDLERFEPKAFVQKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|3334344|sp|O42816|SRP54_CANAL RecName: Full=Signal recognition particle 54 kDa protein homolog gi|2739331|emb|CAA10999.1| Srp54 protein [Candida albicans] Length = 556 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 146/305 (47%), Gaps = 41/305 (13%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVS-----------VQRVLYD 87 DD +++ ++D+ L+ SD+ V + K+ + K +VS +Q++++D Sbjct: 22 DDEIQQMIKDICSALLESDVNVKLVAKLRGNIKNKIDESNVSKETSAMNKRKKLQKIIFD 81 Query: 88 -VSELIHKMLMPLSKPFNWDFSHR-------------PHVILVVGVNGVGKTTVIGKLSK 133 + L+ + P KP S + HVI+ VG+ G GKTT KL+ Sbjct: 82 ELCALVDSNVEP-PKPKKLSTSTKTINGKKVRLSKESSHVIMFVGLQGAGKTTSCTKLAV 140 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 G KV L DTFR+ A DQLK A + + + S + D +A+E ++ + +K Sbjct: 141 YYKKRGFKVGLVCADTFRAGAFDQLKQNAIKANIPYYGSYLEPDPVKIAFEGVQKFKQEK 200 Query: 194 VDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 D++I+DT+GR L M IG+ ++ P + V+D + GQ A Q Sbjct: 201 FDIIIVDTSGRHRQEEQLFTEMVQIGEAVQ---------PTQTIMVMDGSIGQAAESQAR 251 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F + +I+TKMDG A+GGG I V K P+ F+G GE + DLE F F + + Sbjct: 252 AFKESSNFGSIILTKMDGHAKGGGAISAVAATKTPIVFIGTGEHVGDLEIFKPTTFISKL 311 Query: 311 TGCLD 315 G D Sbjct: 312 LGIGD 316 >gi|34556966|ref|NP_906781.1| signal recognition particle protein [Wolinella succinogenes DSM 1740] gi|34482681|emb|CAE09681.1| SIGNAL RECOGNITION PARTICLE PROTEIN [Wolinella succinogenes] Length = 446 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 83/259 (32%), Positives = 134/259 (51%), Gaps = 12/259 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 EEL+ L+++D+ + +++ + + AK + + L S L +L L + Sbjct: 30 EELKKALLKADVHYKAVKDLLKTVENETKAKGIGKESFL---SALRQGLLEILQTSGSQG 86 Query: 107 F---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 F S P V+L+ G+ G GKTT KL+ + G KV++AA D R AA++QLK + Sbjct: 87 FVFASKPPTVVLMAGLQGSGKTTTTAKLASFLKTKGKKVLMAACDLQRLAAVEQLKQLSA 146 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + D E ++ +A A +A DVL++DTAGRL + LM + + + Sbjct: 147 QIEVDLYHEEESANPVQIAKNALHRANEGLYDVLLVDTAGRLAIDEALMQELKSVKEAIH 206 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 PH V V D+ +GQ+ +R E FH +G+I++K DG ++GG + I Sbjct: 207 ------PHEVFYVADSLSGQDGVRSAERFHQEMALSGVILSKFDGDSKGGVALSIAYQIG 260 Query: 284 IPVYFLGVGEGINDLEPFV 302 IP+ F+G GE I DL+PF+ Sbjct: 261 IPLRFIGSGEKIPDLDPFL 279 >gi|60623872|ref|NP_377232.2| signal recognition particle protein [Sulfolobus tokodaii str. 7] gi|28380160|sp|Q971S9|SRP54_SULTO RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 Length = 445 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 96/305 (31%), Positives = 152/305 (49%), Gaps = 31/305 (10%) Query: 28 LKEGITDIISSRRLDDGVRE---ELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVS 80 LK+ + + S D V + EL+ LI+SD+ V + QKI + L ++ + Sbjct: 5 LKDAVRKFLGSSNYDKAVNDFIKELQISLIKSDVNVKLVSNLTQKIKDRL--EKEKPPTA 62 Query: 81 VQRVLYDVSELIHKMLMPLSKPFNWDFSHR------PHVILVVGVNGVGKTTVIGKLSKK 134 ++R + +S + + LSK F D + P+VI++VGV G GKTT GKL+ Sbjct: 63 IERREWFISIVYDE----LSKLFGGDINPEVMPKKIPYVIMLVGVQGSGKTTTAGKLALF 118 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G KV L A D +R AA DQL + + +DA +A ++ ++K Sbjct: 119 YKKKGYKVGLVAADVYRPAAYDQLVQIGKQINVPVYGEPNNTDAVGIAKRGVEKFLSEKY 178 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH----APHSVLQVLDATTGQNALRQVE 250 D++I+DTAGR G G+ +++L+ + P V+ V+DA+ GQ A Sbjct: 179 DIIIVDTAGR--------HGYGEEVKLLEEMKNMYSEIKPDEVILVIDASIGQKAYDLAS 230 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 FH + +I+TKMDGTA+GGG + V + F+G GE +++LE F + F + I Sbjct: 231 RFHQASPIGSIIVTKMDGTAKGGGALSAVAATGAAIKFIGTGEKLDELEVFNPRRFVSRI 290 Query: 311 TGCLD 315 G D Sbjct: 291 LGMGD 295 >gi|68475987|ref|XP_717934.1| hypothetical protein CaO19.3243 [Candida albicans SC5314] gi|68476118|ref|XP_717868.1| hypothetical protein CaO19.10753 [Candida albicans SC5314] gi|46439602|gb|EAK98918.1| hypothetical protein CaO19.10753 [Candida albicans SC5314] gi|46439670|gb|EAK98985.1| hypothetical protein CaO19.3243 [Candida albicans SC5314] Length = 556 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 146/305 (47%), Gaps = 41/305 (13%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVS-----------VQRVLYD 87 DD +++ ++D+ L+ SD+ V + K+ + K +VS +Q++++D Sbjct: 22 DDEIQQMIKDICSALLESDVNVKLVAKLRGNIKNKIDESNVSKETSAMNKRKKLQKIIFD 81 Query: 88 -VSELIHKMLMPLSKPFNWDFSHR-------------PHVILVVGVNGVGKTTVIGKLSK 133 + L+ + P KP S + HVI+ VG+ G GKTT KL+ Sbjct: 82 ELCALVDSNVEP-PKPKKLSTSTKTINGKKVRLSKESSHVIMFVGLQGAGKTTSCTKLAV 140 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 G KV L DTFR+ A DQLK A + + + S + D +A+E ++ + +K Sbjct: 141 YYKKRGFKVGLVCADTFRAGAFDQLKQNAIKANIPYYGSYLEPDPVKIAFEGVQKFKQEK 200 Query: 194 VDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 D++I+DT+GR L M IG+ ++ P + V+D + GQ A Q Sbjct: 201 FDIIIVDTSGRHRQEEQLFTEMVQIGEAVQ---------PTQTIMVMDGSIGQAAESQAR 251 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F + +I+TKMDG A+GGG I V K P+ F+G GE + DLE F F + + Sbjct: 252 AFKESSNFGSIILTKMDGHAKGGGAISAVAATKTPIVFIGTGEHVGDLEIFKPTTFISKL 311 Query: 311 TGCLD 315 G D Sbjct: 312 LGIGD 316 >gi|317049261|ref|YP_004116909.1| signal recognition particle protein [Pantoea sp. At-9b] gi|316950878|gb|ADU70353.1| signal recognition particle protein [Pantoea sp. At-9b] Length = 453 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 93/309 (30%), Positives = 156/309 (50%), Gaps = 25/309 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D +++ L ++ L+ +D+ + V ++ + + + Sbjct: 2 FDNLTDRLSQTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVREFINRVKERAVG 61 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHRPHVILVVGVNGVGKTTVIGK 130 DV+ + L E I + L + + + P V+L+ G+ G GKTT + K Sbjct: 62 HDVN--KSLTPGQEFIKIVRNELVEAMGAENNALNLAAQPPAVVLMAGLQGAGKTTSVAK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + KV++ + D +R AAI QL+ A + DF S++ + A K+A Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIRQLETLAQQVGVDFCPSDLSQKPVDIVNNALKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246 + + DVL++DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 180 RLQFYDVLLVDTAGRLHVDEAMMDEIKQV---------HAAINPVETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TG+I+TK+DG ARGG + I P+ F+GVGE LEPF Sbjct: 231 NTAKAFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFMGVGEKTEALEPFYPDRI 290 Query: 307 SAVITGCLD 315 ++ I G D Sbjct: 291 ASRILGMGD 299 >gi|212695490|ref|ZP_03303618.1| hypothetical protein ANHYDRO_00006 [Anaerococcus hydrogenalis DSM 7454] gi|325846141|ref|ZP_08169235.1| signal recognition particle protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|212677490|gb|EEB37097.1| hypothetical protein ANHYDRO_00006 [Anaerococcus hydrogenalis DSM 7454] gi|325481734|gb|EGC84769.1| signal recognition particle protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 445 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 158/305 (51%), Gaps = 19/305 (6%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F++ S KL++ + + +S + +D+ RE ++ L+ +D+ V + ++++ + Sbjct: 3 FSNLSEKLQDTLGKLTGKGKLSEKDIDNAARE-IKLSLLEADVNYKVVKNFIKKVKERSM 61 Query: 76 AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +DV Q V+ V+E + ++ + S PHV+L+VG+ G GKTT GK Sbjct: 62 GQDVMESLTPGQTVIKIVNEELTNLMGKENSKLELKGST-PHVVLMVGLQGSGKTTHSGK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L +K+ G +L A D +R AAI+QLK+ + + V + D A EA + A+ Sbjct: 121 LVRKLKKEGRNPLLVALDVYRPAAIEQLKVVGGQAEVE-VFEKGKQDPVKTANEAKEYAR 179 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DV+I+DTAGRL + LM + + + +K P +L V+DA GQ ++ + Sbjct: 180 RNNNDVVIMDTAGRLQIDEDLMDELKNIKKAVK------PDEILLVVDAMVGQESVNVAK 233 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F TG+I+TK+DG ARGG + I P+ F+G GE ++DLE F ++ I Sbjct: 234 TFDDYLDITGVILTKLDGDARGGAALSIRQVVGKPIKFIGTGEKLDDLEAFHPDRMASRI 293 Query: 311 TGCLD 315 G D Sbjct: 294 LGMGD 298 >gi|227497506|ref|ZP_03927735.1| signal recognition particle [Actinomyces urogenitalis DSM 15434] gi|226833034|gb|EEH65417.1| signal recognition particle [Actinomyces urogenitalis DSM 15434] Length = 498 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 91/281 (32%), Positives = 145/281 (51%), Gaps = 22/281 (7%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-------VQRVLYDVSELIHKMLMPLS 100 E+ L+ +D+ + V + + K AK+ + Q+V+ V++ + ++L + Sbjct: 33 EIRRALLEADVALPVVRSFTSAVREK--AKEAARSQALNPAQQVIKIVNDELIEVLGGAT 90 Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 + NW P VI++ G+ G GKTT+ GKL + G +V+L A D R A+ QL + Sbjct: 91 RELNW-ADRGPTVIMLAGLQGAGKTTLAGKLGHWLRGEGKRVLLVASDLQRPNAVTQLSV 149 Query: 161 WADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 A+R D E G+ D A+A +QA+ DV+++DTAGRL ++ +M + Sbjct: 150 VAERAGVDVWAPEPGNGVGDPVAVAASGVEQARTHGYDVVVVDTAGRLGVDAEMM---DQ 206 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 IR+ D PH +L VLDA GQ+A+ F G TG++++K+DG ARGG + Sbjct: 207 AIRIR---DAVHPHEILFVLDAMVGQDAVNTSVAFRDGVGFTGVVLSKLDGDARGGAALS 263 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + PV F GEG+ D E F A ++ I LD G+ Sbjct: 264 VRGVTGAPVLFSSTGEGLEDFERFHADRMASRI---LDMGD 301 >gi|241957976|ref|XP_002421707.1| signal recognition particle (SRP) subunit, piutative [Candida dubliniensis CD36] gi|223645052|emb|CAX39646.1| signal recognition particle (SRP) subunit, piutative [Candida dubliniensis CD36] Length = 567 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 145/305 (47%), Gaps = 41/305 (13%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVS-----------VQRVLYD 87 DD + + ++D+ L+ SD+ V + K+ + K +VS +Q++++D Sbjct: 22 DDEISQMIKDICSALLESDVNVKLVAKLRGNIKNKIEEANVSKETSAMNKRKKLQKIIFD 81 Query: 88 -VSELIHKMLMPLSKPFNWDFSHR-------------PHVILVVGVNGVGKTTVIGKLSK 133 + L+ + P KP S + HVI+ VG+ G GKTT KL+ Sbjct: 82 ELCALVDSNVEP-PKPKKLSTSTKTINGKKVRVSKESSHVIMFVGLQGAGKTTSCTKLAV 140 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 G KV L DTFR+ A DQLK A + + + S + D +A+E ++ + +K Sbjct: 141 YYKKRGFKVGLVCADTFRAGAFDQLKQNAIKANIPYYGSYLEPDPVKIAFEGVQKFKQEK 200 Query: 194 VDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 D++I+DT+GR L M IG+ ++ P + V+D + GQ A Q Sbjct: 201 FDIIIVDTSGRHRQEEQLFTEMVQIGEAVQ---------PSQTVMVMDGSIGQAAESQAR 251 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F + +I+TKMDG A+GGG I V K P+ F+G GE + DLE F F + + Sbjct: 252 AFKESSNFGSIILTKMDGHAKGGGAISAVAATKTPIVFIGTGEHVGDLEIFKPTTFISKL 311 Query: 311 TGCLD 315 G D Sbjct: 312 LGIGD 316 >gi|227499935|ref|ZP_03930028.1| signal recognition particle protein Ffh [Anaerococcus tetradius ATCC 35098] gi|227218044|gb|EEI83317.1| signal recognition particle protein Ffh [Anaerococcus tetradius ATCC 35098] Length = 445 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 97/305 (31%), Positives = 154/305 (50%), Gaps = 19/305 (6%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F S +L+E + + +S + +D +RE + L+ +D+ V + V+ + + Sbjct: 3 FEGLSERLQETLGKLTGKGKLSEKDIDAAMRE-IRLSLLEADVNYKVVKDFVKTIKERSL 61 Query: 76 AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +DV Q V+ V+E + ++ + + S PH++++VG+ G GKTT GK Sbjct: 62 GQDVMTSLSPGQMVVKIVNEELTCLMGKENSKLDLKGST-PHMVMMVGLQGSGKTTHSGK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K+ ML A D +R AAI+QLK+ + V + D A EA A+ Sbjct: 121 LALKLKKENRNPMLTALDIYRPAAIEQLKVVGKNAGVE-VFEKDKQDPVKTAKEAKDYAR 179 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A + DV+I+DTAGRL ++ LM + + + P +L V+DA TGQ A+ + Sbjct: 180 ANRHDVVILDTAGRLQIDTDLMDELKNIKEAVN------PDEILLVVDAMTGQEAVNVAK 233 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F TG+I+TK+DG ARGG + I P+ F+GVGE + DLEPF + I Sbjct: 234 TFDDYLDITGVILTKLDGDARGGAALSIRQVVGKPIKFIGVGEKLEDLEPFHPDRMANRI 293 Query: 311 TGCLD 315 G D Sbjct: 294 LGMGD 298 >gi|238879597|gb|EEQ43235.1| signal recognition particle 54 kDa protein [Candida albicans WO-1] Length = 556 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 146/305 (47%), Gaps = 41/305 (13%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVS-----------VQRVLYD 87 DD +++ ++D+ L+ SD+ V + K+ + K +VS +Q++++D Sbjct: 22 DDEIQQMIKDICSALLESDVNVKLVAKLRGNIKNKIDESNVSKETSAMNKRKKLQKIIFD 81 Query: 88 -VSELIHKMLMPLSKPFNWDFSHR-------------PHVILVVGVNGVGKTTVIGKLSK 133 + L+ + P KP S + HVI+ VG+ G GKTT KL+ Sbjct: 82 ELCALVDSNVEP-PKPKKLSTSTKTINGKKVRLSKESSHVIMFVGLQGAGKTTSCTKLAV 140 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 G KV L DTFR+ A DQLK A + + + S + D +A+E ++ + +K Sbjct: 141 YYKKRGFKVGLVCADTFRAGAFDQLKQNAIKANIPYYGSYLEPDPVKIAFEGVQKFKQEK 200 Query: 194 VDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 D++I+DT+GR L M IG+ ++ P + V+D + GQ A Q Sbjct: 201 FDIIIVDTSGRHRQEEQLFTEMVQIGEAVQ---------PTQTIMVMDGSIGQAAESQAR 251 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F + +I+TKMDG A+GGG I V K P+ F+G GE + DLE F F + + Sbjct: 252 AFKESSNFGSIILTKMDGHAKGGGAISAVAATKTPIVFIGTGEHVGDLEIFKPTTFISKL 311 Query: 311 TGCLD 315 G D Sbjct: 312 LGIGD 316 >gi|288942105|ref|YP_003444345.1| signal recognition particle protein [Allochromatium vinosum DSM 180] gi|288897477|gb|ADC63313.1| signal recognition particle protein [Allochromatium vinosum DSM 180] Length = 464 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 163/305 (53%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEEL----LT 72 F + + + +T++ RL +D +++ L ++ L+ +D+ + V ++ +E++ L Sbjct: 2 FENLQDRFETVLTNLRGQGRLTEDNIKDTLREVRMALLEADVALPVVRQFIEDIREQALG 61 Query: 73 KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K ++ +VL V++ + K++ ++ + + P VIL+ G+ G GKTT + KL Sbjct: 62 EAVTKSLTPGQVLIKIVNDELVKIMGAANERLDL-AAQPPAVILMAGLQGSGKTTSVAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 ++ + + K VM+ + D +R AAI+QL+ A A+F S+ D +A A + A+ Sbjct: 121 ARWLQEKQKKSVMVVSCDVYRPAAIEQLRTVAGEVGAEFCPSQGDEDPVHIAQRALESAR 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + DVLI+DTAGRLH ++ +M I + + +K P L V+D+ TGQ+A + Sbjct: 181 KRFKDVLIVDTAGRLHVDAEMMDEIKLIHKAIK------PVETLFVVDSMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F TG+I+TK DG ARGG + I P+ FLG GE LEPF ++ I Sbjct: 235 AFDEALPLTGVILTKTDGDARGGAALSIRQITGKPIKFLGTGERTTALEPFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|212535310|ref|XP_002147811.1| signal recognition particle protein SRP54 [Penicillium marneffei ATCC 18224] gi|210070210|gb|EEA24300.1| signal recognition particle protein SRP54 [Penicillium marneffei ATCC 18224] Length = 537 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 93/301 (30%), Positives = 144/301 (47%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ + D+ S LD D + +E+ L+ +D+ V + Q + + + L Sbjct: 9 RINAAVNDLTRSNTLDEKAFDDMLKEICSALLSADVNVRLVQNLRKSIKHSVNFSSLPSA 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D EL+ ++ P + PF R +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--ELV-ALVNPHADPFKPK-KGRVNVIMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G K L DTFR+ A DQLK A + + S +D +A E Q + ++ Sbjct: 125 YQMRGFKTALVCADTFRAGAFDQLKQNAIKAKIPYYGSLTQTDPVVVAAEGVAQFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D++I+DT+GR L + ++ ++ P + VLD+T GQ A Q F A Sbjct: 185 DIIIVDTSGRHKQEEDLFEEMTQIQNAVR------PDQTILVLDSTIGQAAEAQSSAFKA 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V P+ FLG GE + DLE F K F + G Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMMDLERFEPKAFIQKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|242792738|ref|XP_002482016.1| signal recognition particle protein SRP54 [Talaromyces stipitatus ATCC 10500] gi|218718604|gb|EED18024.1| signal recognition particle protein SRP54 [Talaromyces stipitatus ATCC 10500] Length = 534 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 146/301 (48%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ ++D+ S +D D + +E+ L+ +D+ V + Q + + + L Sbjct: 9 RINAAVSDLTRSNTVDEKAFDDMLKEICSALLSADVNVRLVQSLRKSIKHNVNFSSLPSA 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D EL+ ++ P ++PF R +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--ELV-ALVNPHAEPFKPK-KGRVNVIMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G K L DTFR+ A DQLK A + + S +D +A E Q + ++ Sbjct: 125 YQMRGFKTALVCADTFRAGAFDQLKQNAIKAKIPYYGSLTQTDPVVVAAEGVAQFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D++I+DT+GR L + ++ ++ P + VLD+T GQ A Q F A Sbjct: 185 DIIIVDTSGRHKQEEDLFEEMTQIQNAVR------PDQTILVLDSTIGQAAEAQSSAFKA 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V P+ FLG GE + DLE F K F + G Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMMDLERFEPKAFIQKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|310822873|ref|YP_003955231.1| signal recognition particle protein [Stigmatella aurantiaca DW4/3-1] gi|309395945|gb|ADO73404.1| Signal recognition particle protein [Stigmatella aurantiaca DW4/3-1] Length = 544 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 103/323 (31%), Positives = 155/323 (47%), Gaps = 35/323 (10%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEE 69 + +TKGF S +L G +++ V E L D+ L+ +D+ V +K V Sbjct: 1 MLETVTKGFRSAKNRLA-GKSELTPEL-----VDESLRDIRVSLLEADVSFDVVKKFVSR 54 Query: 70 LLTKRYAKDVSVQRVLYDVS-------------ELIHKMLMPLSKPFNWDFSHRPHV--- 113 + K + VQ + D S ++ H L L P + +P Sbjct: 55 VREKAVGE--VVQTTITDKSGQKRKVSPADYFVKVCHDELEALMGPVDTSLKLKPRGQLS 112 Query: 114 -ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 I++VG+ G GKTT GKL+ ++ G K +L A D +R AA+DQLK+ +R V Sbjct: 113 GIMMVGLQGSGKTTTTGKLANRLLQEGRKPLLVAADIYRPAAVDQLKVLGERLKVP-VYF 171 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 E G LA + A+ +K DV++IDTAGRL + LMA + + + + H P + Sbjct: 172 EPGVAPPELAVRGYAAAREQKCDVVLIDTAGRLAIDESLMAELESI-----KGNVH-PDN 225 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 +L V DA GQ+A+R F G I+TK+DG ARGG + I P+ FLG+G Sbjct: 226 ILLVCDAMIGQDAVRTAAEFDRRLTLDGFILTKLDGDARGGAALSIKEVTGKPIKFLGMG 285 Query: 293 EGINDLEPFVAKDFSAVITGCLD 315 E ++ LE F + + I G D Sbjct: 286 ESMDKLEEFRPEGLAGRILGFGD 308 >gi|27262412|gb|AAN87487.1| signal recognition particle subunit Ffh/Srp54 [Heliobacillus mobilis] Length = 300 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 86/262 (32%), Positives = 136/262 (51%), Gaps = 18/262 (6%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSELIHKMLMPL 99 E+ L+ +D+ + V + V + + +DV V +V++D ELI M Sbjct: 40 EVRMALLAADVNLKVVKDFVARVKERAIGQDVLESLTPGQQVVKVVHD--ELIQLMGGTT 97 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 SK N S P V+++VG+ G GKTT + KL + G + +L A D +R AA+ QL+ Sbjct: 98 SK-LNMS-SKPPTVVMLVGLQGAGKTTTVAKLGLYLRKQGRRPLLVACDVYRPAAVKQLQ 155 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 + ++ G +A A + A A+ DV+++DTAGRLH N LM + + Sbjct: 156 VLGNQLDLPVFSMGTGVSPVDIARGATEYAVAQGRDVILLDTAGRLHINEELMDELKSIK 215 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 +K PH ++ V+DA TGQ+A+ + FH G G+++TK+DG ARGG + + Sbjct: 216 STVK------PHEIMLVVDAMTGQDAVNVADSFHKQLGLDGVVLTKLDGDARGGAALSVK 269 Query: 280 VTHKIPVYFLGVGEGINDLEPF 301 P+ F G+GE + LEPF Sbjct: 270 AVTGCPIKFAGMGEKPDALEPF 291 >gi|220905067|ref|YP_002480379.1| signal recognition particle protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869366|gb|ACL49701.1| signal recognition particle protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 512 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 87/271 (32%), Positives = 141/271 (52%), Gaps = 18/271 (6%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPL--SKPFNW 105 L+ +D+ V + VE + K ++V Q+V+ +++H L+ L + Sbjct: 38 LLEADVNFKVVKDFVENVREKCLGQEVLKGVSPAQQVV----KIVHDELVGLLGGETAAL 93 Query: 106 DFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 D R P VI++VG+ G GKTT GK++ + ++ L D +R AAIDQL + A + Sbjct: 94 DLQGREPAVIMLVGLQGSGKTTSAGKIANILRKQKMRPYLVPADVYRPAAIDQLTVLAKQ 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 S + D +A A ++A+ ++ VL++DTAGRLH + LM + + ++ Sbjct: 154 LDMPCYPSTVDMDPVDIAKAALEEARREQATVLLLDTAGRLHVDEPLMQELEAIKAAVQ- 212 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P +L V DA TGQ+A+ E F+ G TG+++TKMDG ARGG + I Sbjct: 213 -----PQEILFVADAMTGQDAVTVAESFNERLGVTGVVLTKMDGDARGGAALSIRAVTGA 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 PV F+G+GE ++++E F + I G D Sbjct: 268 PVKFVGMGEKLSEMEVFHPDRIAGRILGMGD 298 >gi|119774025|ref|YP_926765.1| signal recognition particle protein [Shewanella amazonensis SB2B] gi|119766525|gb|ABL99095.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella amazonensis SB2B] Length = 457 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 153/304 (50%), Gaps = 25/304 (8%) Query: 30 EGITDIIS---------SRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAK 77 E +TD +S R +D +++ L ++ L+ +D+ + V ++ V + + + Sbjct: 3 ENLTDRLSRTLKTISGRGRLTEDNIKDTLREVRMALLEADVALPVVREFVNAVKERAVGQ 62 Query: 78 DVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 DV+ Q + V + K + ++ N + P VI++ G+ G GKTT + KLS Sbjct: 63 DVAKSLTPGQVFVKIVQSELEKAMGEANEALNL-AAQPPAVIMMAGLQGAGKTTSVAKLS 121 Query: 133 KKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 K + K V++ + D +R AAI QL+ A +F S++ +A A A+ Sbjct: 122 KFLRTRQKKSVLVVSADVYRPAAIKQLETLAKEVEVEFFPSDVSQKPIDIANAAISHAKL 181 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K +DV+I+DTAGRLH + +M I + +K P L V+DA TGQ+A + Sbjct: 182 KFIDVVILDTAGRLHVDEAMMDEIKALHAAVK------PIETLFVVDAMTGQDAANTAKA 235 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ TG+++TK+DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 236 FNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRVASRIL 295 Query: 312 GCLD 315 G D Sbjct: 296 GMGD 299 >gi|159903874|ref|YP_001551218.1| signal recognition particle protein (SRP54) [Prochlorococcus marinus str. MIT 9211] gi|159889050|gb|ABX09264.1| signal recognition particle protein (SRP54) [Prochlorococcus marinus str. MIT 9211] Length = 485 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 86/274 (31%), Positives = 141/274 (51%), Gaps = 24/274 (8%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS---------VQRVLYDVSELIHKMLMPLSKPF 103 L+ +D+ ++V ++ V E+ K +V V+ V ++ E++ PL+ Sbjct: 38 LLEADVSLSVVKEFVAEVGQKAIGAEVVRGVKPGQKFVEVVKQELVEVMGGENAPLA--- 94 Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 + S +P VIL+ G+ G GKTT KL+ + D G K ++ A D +R AAI+QL Sbjct: 95 --NVSEKPTVILMAGLQGAGKTTATAKLALHLKDQGRKALMVAADVYRPAAIEQLTTLGS 152 Query: 164 RTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 + D +GS+ +A ++A+ + D L++DTAGRL +S +M +M+R+ Sbjct: 153 QIDIDVFS--LGSNLKPEQIAASGLEKARNEGFDTLLVDTAGRLQIDSEMM---DEMVRI 207 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 ++ P VL V+D+ GQ A FH G TG ++TK+DG +RGG + I Sbjct: 208 RSAVN---PDEVLLVVDSMIGQEAAELTRAFHEKVGITGAVLTKLDGDSRGGAALSIKKI 264 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + LEPF + ++ I G D Sbjct: 265 SGKPIKFIGTGEKVEALEPFHPERMASRILGMGD 298 >gi|282882960|ref|ZP_06291564.1| signal recognition particle protein [Peptoniphilus lacrimalis 315-B] gi|281297167|gb|EFA89659.1| signal recognition particle protein [Peptoniphilus lacrimalis 315-B] Length = 445 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 152/308 (49%), Gaps = 25/308 (8%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ + + +L D E++ L+ +D+ V + ++ TK A Sbjct: 3 FESLSEKLQNTLNKLTGKGKLTEKDIDAAMREVKLALLEADVNFKVVKDFIKN--TKERA 60 Query: 77 KDVSV-------QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V Q+V+ V++ + ++ + D+S +P VIL+ G+ G GKTT G Sbjct: 61 LGSQVLESLTPGQQVIKIVNDELKNLMG--KEQVKIDYSKKPTVILMCGLQGAGKTTTAG 118 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--DAAALAYEAFK 187 KL+ KM G + +L A D +R AAI QL++ S D +G D ++ + + Sbjct: 119 KLANKMKQEGKRPLLVACDVYRPAAIKQLQVVG--KSVDVPVFTMGDKIDPVDISKASLE 176 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ DVLIIDTAGRL + LM + + L+ P VL VLD+ TGQ A+ Sbjct: 177 HAKKNGNDVLIIDTAGRLQIDEKLMQELKNIYDALE------PSEVLLVLDSMTGQEAVN 230 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F TG+I+TK+DG ARGG + I +P+ F+ GE ++++E F + Sbjct: 231 VADTFDDTLKLTGVILTKLDGDARGGAALSIRAVTDVPIKFIASGEKMDNIEVFHPDRMA 290 Query: 308 AVITGCLD 315 + I G D Sbjct: 291 SRILGMGD 298 >gi|227553504|ref|ZP_03983553.1| signal recognition particle protein [Enterococcus faecalis HH22] gi|227177374|gb|EEI58346.1| signal recognition particle protein [Enterococcus faecalis HH22] Length = 442 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 81/208 (38%), Positives = 117/208 (56%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++ G+ G GKTT GKL+K M + +L AGD +R AAIDQLK+ + + Sbjct: 71 PTVIMMTGLQGAGKTTFTGKLAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQL--EV 128 Query: 170 VCSEIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 ++G+DA + + A+ KK D ++IDTAGRLH + LM + K I+ L Sbjct: 129 PVFDMGTDANPVEIVRQGLALAKEKKNDYVLIDTAGRLHIDEALMDEL-KQIKEL----- 182 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA TGQ+A+ + F+ G TG+++TKMDG RGG + I P+ Sbjct: 183 ADPNEILLVVDAMTGQDAVNVADSFNEQLGITGVVITKMDGDTRGGAALSIRAVTGAPIK 242 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G GE + DLE F S+ I G D Sbjct: 243 FVGSGEKLTDLEIFHPDRMSSRILGMGD 270 >gi|157413847|ref|YP_001484713.1| signal recognition particle protein [Prochlorococcus marinus str. MIT 9215] gi|157388422|gb|ABV51127.1| signal recognition particle protein (SRP54) [Prochlorococcus marinus str. MIT 9215] Length = 492 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 87/286 (30%), Positives = 149/286 (52%), Gaps = 14/286 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 IS ++D + + ++ L+ +D+ ++V + + E+ K ++V Q+ + V++ Sbjct: 22 ISENNINDALNQ-VKRALLDADVSLSVVKDFISEVKEKAIGEEVVRGVNPGQKFIEVVNK 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + ++ + P N + + P VIL+ G+ G GKTT GKL + + KV+L A D + Sbjct: 81 ELINIMGNENSPLNEN-KNSPTVILMAGLQGAGKTTATGKLGLYLKEKDKKVLLVAADIY 139 Query: 151 RSAAIDQLKIWADRTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 R AA++QLK + + F E +A +A A+ + +IIDTAGRL + Sbjct: 140 RPAAVEQLKTLGSQYDLEVFSAKEKNCKPEVIAKDALNFARENDFNSIIIDTAGRLQIDD 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 +M+ +M+R+ + P VL V+D+ GQ A + FH G +G I+TK+DG Sbjct: 200 SMMS---EMVRIK---EVSNPDEVLLVVDSMIGQEAADLTKSFHEKVGISGAILTKLDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + I P+ F+GVGE I L+PF + ++ I G D Sbjct: 254 SRGGAALSIRKISGKPIKFIGVGEKIEALQPFHPERMASRILGMGD 299 >gi|56460828|ref|YP_156109.1| Signal recognition particle GTPase [Idiomarina loihiensis L2TR] gi|56179838|gb|AAV82560.1| Signal recognition particle GTPase [Idiomarina loihiensis L2TR] Length = 454 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 157/306 (51%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72 F + S +L + + I RL +D ++E L ++ L+ +D+ + V + K+ E + Sbjct: 2 FENLSERLSQTLHSIGGRGRLTEDNIKETLREVRMALLEADVALPVVKDFIAKVKERAVG 61 Query: 73 KRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K ++ +V + SEL + + P + + P VIL+ G+ G GKTT +GK Sbjct: 62 TEVNKSLTPGQVFVKIVQSEL-EAAMGEANAPLQLN-TQPPAVILMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L+K +++ KVM+ + D +R AAI QL+ A++ +F S +A A QA Sbjct: 120 LAKYLTERQKKKVMVVSADVYRPAAIKQLETLAEQVGVEFFPSSTDQKPVDIANAAIAQA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + + +DV+++DTAGRL + +M I ++ + P L V+DA TGQ+A Sbjct: 180 RKQFIDVVLVDTAGRLAIDEDMMQEIQQLHSAIN------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK DG ARGG + I P+ FLGVGE + LEPF ++ Sbjct: 234 KAFSEALPLTGVILTKTDGDARGGAALSIRHITGKPIKFLGVGEKNDALEPFHPDRVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|116200506|ref|XP_001226065.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51] gi|88175512|gb|EAQ82980.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51] Length = 512 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 86/301 (28%), Positives = 148/301 (49%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-- 80 ++ + D+ + LD D + + + L+ +D+ V + ++ + + + KD+ Sbjct: 9 RINAAVNDLTRAPNLDEKTFDSMLKTICSALLEADVNVRLVGQLRKSIRSTVNFKDLPPA 68 Query: 81 ------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 +Q+ +YD EL+ ++ P ++PF + +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVYD--ELVS-LVDPHAEPFKPK-KGKSNVIMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G + L DTFR+ A DQLK A + + S +D +A E ++ + ++ Sbjct: 125 YQSRGFRACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPTVVAREGVEKFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 +++I+DT+GR S L + + +K P + VLDA+ GQ A Q + F Sbjct: 185 EIIIVDTSGRHRQESALFQEMTDIQTAIK------PDETIMVLDASIGQQAEAQAKAFKE 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V P+ F+G GE + D E FV + F + + G Sbjct: 239 AADFGAIIITKTDGHAAGGGAISAVAATHTPIVFIGTGEHMFDFERFVPRSFISKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|85098637|ref|XP_960643.1| signal recognition particle 54 kDa protein [Neurospora crassa OR74A] gi|28922154|gb|EAA31407.1| signal recognition particle 54 kDa protein [Neurospora crassa OR74A] gi|28949956|emb|CAD70717.1| probable signal recognition particle subunit SRP54 [Neurospora crassa] Length = 511 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 87/301 (28%), Positives = 152/301 (50%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-- 80 ++ ++D+ + LD DG+ +E+ L+ +D+ V + ++ + + + K++ Sbjct: 9 RINAAVSDLTRAPNLDEKAFDGMLKEICSALLEADVNVRLVGQLRKSIKSTVNFKELPPA 68 Query: 81 ------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 +Q+ ++D EL+ +++ P ++PF + +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--ELV-RLVDPHAEPFKPK-KGKSNVIMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G +V L DTFR+ A DQLK A + + S +D +A + + + +K Sbjct: 125 YQSRGFRVGLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPVVVARDGVDKFKKEKF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 +++I+DT+GR L + + +K P + VLDA+ GQ A Q + F Sbjct: 185 EIIIVDTSGRHRQEEALFQEMMDIQTAVK------PDETIMVLDASIGQQAEAQAKAFKE 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V P+ F+G GE + DLE FV +F + + G Sbjct: 239 AADFGAIIITKTDGHAAGGGAISAVAATHTPIVFIGTGEHMLDLERFVPNNFISKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|119183283|ref|XP_001242701.1| hypothetical protein CIMG_06597 [Coccidioides immitis RS] Length = 530 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 148/301 (49%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ ++D+ S LD D + +E+ L+ +D+ V + Q + + + + Sbjct: 9 RINAAVSDLTRSNDLDEKVFDSMLKEICAALLSADVNVRLVQNLRKSIKSSVNFSSIPPA 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D +L+ ++ P ++PF R +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--QLV-ALVDPHTEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G K L DTFR+ A DQLK A + + S +D A +A + + + +K Sbjct: 125 YQTRGFKSALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAIVAADGVAKFKKEKF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 +V+I+DT+GR L A + ++ +K P + VLD++ GQ A Q F A Sbjct: 185 EVIIVDTSGRHKQEEDLFAEMTQIQNAVK------PDQTILVLDSSIGQAAEAQSAAFKA 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V P+ FLG GE + DLE F K F + G Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMLDLERFAPKPFIQKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|317969124|ref|ZP_07970514.1| signal recognition particle protein [Synechococcus sp. CB0205] Length = 488 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 85/282 (30%), Positives = 147/282 (52%), Gaps = 18/282 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPLS 100 DG +++ L+ +D+ + V + VEE+ K ++V V+ + D +++H+ L+ Sbjct: 28 DGALKDVRRALLEADVSLPVVKDFVEEVRKKALGEEV-VRGISPDQKFIQVVHEQLVETM 86 Query: 101 KPFNWDFSHR-----PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 N + P V+L+ G+ G GKTT KL + + G + +L D +R AAI Sbjct: 87 GGENAPLAPAGKEGAPAVVLMAGLQGAGKTTATAKLGLHLKEKGRRALLVGADVYRPAAI 146 Query: 156 DQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 +QLK + + +G+DA A+A ++A+A+ D +++DTAGRL ++ +M Sbjct: 147 EQLKTLGGQIGVEVFS--LGTDAKPEAIAAAGIEKAKAEGFDTVLVDTAGRLQIDTSMME 204 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 +M+R+ + + P VL V+D+ GQ A FH G TG ++TK+DG +RGG Sbjct: 205 ---EMVRIREAVQ---PDEVLLVVDSMIGQEAAELTRAFHDQVGITGAVLTKLDGDSRGG 258 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+G GE + L+PF + ++ I G D Sbjct: 259 AALSIRKVSGAPIKFIGTGEKVEALQPFHPERMASRILGMGD 300 >gi|307244407|ref|ZP_07526518.1| signal recognition particle protein [Peptostreptococcus stomatis DSM 17678] gi|306492226|gb|EFM64268.1| signal recognition particle protein [Peptostreptococcus stomatis DSM 17678] Length = 452 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 118/208 (56%), Gaps = 12/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VI++VG+ G GKTT GKL + G +L A D +R AAI QL++ ++ D Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLGGYLKKDGKSPLLVACDVYRPAAIKQLQVVGEKL--DLP 158 Query: 171 CSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 +G + +A +A + A++ DV+IIDTAGRLH + +LM + LK + Sbjct: 159 VFAMGDQVSPVEIAKKALEHAKSHSNDVVIIDTAGRLHVDEVLM-------QELKDIKTQ 211 Query: 229 A-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ TGQ+A+ E F+ + G G+++TK+DG RGG + I + P+ Sbjct: 212 VNPQEILLVVDSMTGQDAVNVSESFNEILGIDGVVLTKLDGDTRGGAALSIRAVTQKPIK 271 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE +++LEPF ++ I G D Sbjct: 272 FIGMGEKLDNLEPFYPDRMASRILGMGD 299 >gi|255505348|ref|ZP_05345603.3| signal recognition particle protein [Bryantella formatexigens DSM 14469] gi|255268496|gb|EET61701.1| signal recognition particle protein [Bryantella formatexigens DSM 14469] Length = 451 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 93/308 (30%), Positives = 167/308 (54%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ ++ S RL + V+ L+++ L+ +D+ V ++ ++ + + Sbjct: 5 FESLSDKLQNVFKNLRSKGRLTEADVKAALKEVKMALLEADVSFKVVKQFMKSVQERAVG 64 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPH----VILVVGVNGVGKTTV 127 DV Q V+ +++++ L+ L + + RP VI++VG+ G GKTT Sbjct: 65 ADVMTGLNPGQMVI----KIVNEELVALMGSETTEIALRPAGEITVIMMVGLQGAGKTTT 120 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 KL+ K+ G +LAA D +R AAI QL+I ++ + +A A + Sbjct: 121 TAKLAGKLKSKGRVPLLAACDVYRPAAIQQLQINGEKQGIEVFSMGDKQSPVNIARAAVE 180 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+++ ++V+I+DTAGRLH + +M +++++ + + H ++L V+DA TGQ+A+ Sbjct: 181 HAKSRNMNVVILDTAGRLHVDEEMM---DELVQIKEAV--HVDQTIL-VVDAMTGQDAVN 234 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 EMF+ G G+I+TK+DG +RGG + I T P+ ++G+GE ++DLE F + Sbjct: 235 VSEMFNEKIGIDGVILTKLDGDSRGGAALSIRATCGKPILYVGMGEKLSDLEQFYPDRMA 294 Query: 308 AVITGCLD 315 + I G D Sbjct: 295 SRILGMGD 302 >gi|148555568|ref|YP_001263150.1| signal recognition particle subunit FFH/SRP54 (srp54) [Sphingomonas wittichii RW1] gi|148500758|gb|ABQ69012.1| signal recognition particle subunit FFH/SRP54 (srp54) [Sphingomonas wittichii RW1] Length = 491 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 88/280 (31%), Positives = 152/280 (54%), Gaps = 16/280 (5%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKML 96 VRE + ++ L+ +D+ + V ++ VE++ + + V SV Q+V+ V++ + +ML Sbjct: 27 VREAMREVRVALLEADVALPVVRQFVEKVTEQAVGQQVLRSVTPGQQVVKIVNDALVEML 86 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAI 155 + N D + P ++++VG+ G GKTT K++K++S+ G K VM+A+ D R AA Sbjct: 87 GSEASDLNLDVTP-PAIVMMVGLQGSGKTTTTAKIAKRLSEKGRKKVMMASLDVNRPAAQ 145 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 +QL + + S + G +A A + A+ + DVL++DTAGRLH + LM + Sbjct: 146 EQLAVLGTQASVATLPIVAGQQPVDIARRALQAAKLQGFDVLMLDTAGRLHVDQALMEEM 205 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 + V + P +L V+DA TGQ+A+ + F TG+++T+MDG ARGG Sbjct: 206 KAVATVAE------PEEILLVVDALTGQDAVNVAKSFSEQVALTGVVLTRMDGDARGGAA 259 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ F+G GE ++ +E F + I G D Sbjct: 260 LSMRAVTGKPIKFVGTGEKLDGIELFQPARVAGRILGMGD 299 >gi|154251871|ref|YP_001412695.1| signal recognition particle protein [Parvibaculum lavamentivorans DS-1] gi|154155821|gb|ABS63038.1| signal recognition particle protein [Parvibaculum lavamentivorans DS-1] Length = 504 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 89/288 (30%), Positives = 154/288 (53%), Gaps = 16/288 (5%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL--YDVSELIH 93 +S + +D+ +RE + L+ +D+ + VA+ ++++ + +V ++ V V +++H Sbjct: 22 LSEKDVDEAMRE-VRRALLEADVALPVAKSFIDKVRARAIGHEV-LKSVTPGQQVIKIVH 79 Query: 94 KMLMPLSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAG 147 L+ + D S P VI++VG+ G GKTT K++K+M+ ++M+A+ Sbjct: 80 DELVEMLGGAEADTSISLRAAAPVVIMMVGLQGSGKTTSTAKIAKRMTTRDKRRIMMASL 139 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DT R AA +QLKI ++ + G +A A + A+ DVL++DTAGR+H Sbjct: 140 DTRRPAAQEQLKILGEQAGVATLPIVAGQQPVQIAKRAVEAARLGGFDVLMLDTAGRIHI 199 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + LMA + ++ D PH L V D+ TGQ+A+ E F+A G TG+++T++D Sbjct: 200 DEDLMAEVAQV------RDAANPHETLLVADSLTGQDAVNVAEQFNARIGVTGIVLTRVD 253 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G RGG + + +P+ LG GE ++ LE F A + I G D Sbjct: 254 GDGRGGAALSMRAVTGVPIKLLGTGEKMDALEDFRADRVAGRILGMGD 301 >gi|224373532|ref|YP_002607904.1| signal recognition particle protein [Nautilia profundicola AmH] gi|223589622|gb|ACM93358.1| signal recognition particle protein [Nautilia profundicola AmH] Length = 449 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 89/301 (29%), Positives = 157/301 (52%), Gaps = 23/301 (7%) Query: 27 KLKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80 K+ +G I+ R+ D + +EL+ L+++D+ V + ++ E+ + + Sbjct: 4 KISDGFKSAINKIRMKDDEKALKKALDELKKNLLKADVHFKVVKDLLREVEVETKKAGIG 63 Query: 81 VQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137 L + + + K+L + P N+ F S P V+L+ G+ G GKTT KL+ + + Sbjct: 64 KANFLKALDKTLTKIL---TAPGNYGFVYASKPPTVVLMTGLQGSGKTTTTAKLANYLKE 120 Query: 138 -AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196 KV++ A D R AA++QLK A++ D E D +A ++A+ K DV Sbjct: 121 FKKKKVLMVAADLQRLAAVEQLKQLAEQNGLDIFYDENSKDPVDIAKRGVEEAKEKFYDV 180 Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256 ++IDTAGRL + LM ++I++ ++PH + V D+ TG++AL + F Sbjct: 181 VLIDTAGRLAIDDELM---NELIKIKNEVNPH---EIFYVADSLTGKDALNTAKQFDEKL 234 Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKI--PVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 TG+I+TK DG ++GG + + + H++ P+ F+G GE + D+E FV + + I G Sbjct: 235 DITGVILTKYDGDSKGG--VALSIAHQVGKPLRFIGTGEKVQDIEVFVPERIVSRIMGAG 292 Query: 315 D 315 D Sbjct: 293 D 293 >gi|289616337|emb|CBI56864.1| unnamed protein product [Sordaria macrospora] Length = 512 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 87/301 (28%), Positives = 152/301 (50%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-- 80 ++ ++D+ + LD DG+ +E+ L+ +D+ V + ++ + + + K++ Sbjct: 9 RINAAVSDLTRAPNLDEKAFDGMLKEICSALLEADVNVRLVGQLRKSIKSTVNFKELPPA 68 Query: 81 ------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 +Q+ ++D EL+ +++ P ++PF + +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--ELV-RLVDPHAEPFKPK-KGKSNVIMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G +V L DTFR+ A DQLK A + + S +D +A + + + +K Sbjct: 125 YQSRGFRVGLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPVVVARDGVDKFKKEKF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 +++I+DT+GR L + + +K P + VLDA+ GQ A Q + F Sbjct: 185 EIIIVDTSGRHRQEESLFQEMMDIQTAVK------PDETIMVLDASIGQQAEAQAKAFKE 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V P+ F+G GE + DLE FV +F + + G Sbjct: 239 AADFGAIIITKTDGHAAGGGAISAVAATHTPIVFIGTGEHMLDLERFVPNNFISKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|193212765|ref|YP_001998718.1| signal recognition particle protein [Chlorobaculum parvum NCIB 8327] gi|193086242|gb|ACF11518.1| signal recognition particle protein [Chlorobaculum parvum NCIB 8327] Length = 449 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 82/268 (30%), Positives = 138/268 (51%), Gaps = 12/268 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ VA+K+VE++ K ++V Q ++ V++ + +++ ++P N Sbjct: 38 LLSADVNYKVAKKLVEDIREKSLGEEVIKSVSPAQMIVKIVNDELAEIMGGENQPLNLPP 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 P +++V G+ G GKTT KL+K++ G ML A D +R AAI+QLK ++ Sbjct: 98 KKMPAIVMVAGLQGSGKTTFCAKLAKRLKKNGKNPMLVAADVYRPAAIEQLKTLGEQIDV 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 E DA A + A+ DVLI+DTAGRL + +MA + L Sbjct: 158 PVYSVE-EQDAMKAALGGLEAAKNGAKDVLIVDTAGRLQIDEAMMAEAEALKNKL----- 211 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 +P +L V+D+ GQ A+ + F+ G+++TK+DG +RGG + I + P+ Sbjct: 212 -SPDELLFVVDSMMGQEAVNTAKAFNERLDFDGVVLTKLDGDSRGGAALSIRQVVEKPIK 270 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ VGE ++DL+ F + I G D Sbjct: 271 FMSVGEKVDDLDLFYPDRMAQRILGMGD 298 >gi|220934024|ref|YP_002512923.1| signal recognition particle protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995334|gb|ACL71936.1| signal recognition particle protein [Thioalkalivibrio sp. HL-EbGR7] Length = 453 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 88/288 (30%), Positives = 152/288 (52%), Gaps = 16/288 (5%) Query: 37 SSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDV 88 +R +D ++E L ++ L+ +D+ + V ++ + + + ++V Q ++ V Sbjct: 19 QARITEDNIQETLREVRMALLEADVALPVVREFISRVKERALGQEVLSSLTPGQALIKIV 78 Query: 89 SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAG 147 ++ + ++ ++ + P VIL+ G+ G GKTT KL++ + + K V + + Sbjct: 79 NDELISVMGQANESLQLNV-QPPAVILMAGLQGSGKTTTTAKLARLLKERHKKNVAVVSC 137 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 D +R AAI QL+ A +F+ S G D A+A A QA+ K DVLI+DTAGRLH Sbjct: 138 DVYRPAAIKQLETLAGEIDVEFIPSSGGEDPVAIASRALDQARKKFFDVLIVDTAGRLHV 197 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 ++ +MA I ++ + +P L V+D+ TGQ+A + F+ TG+++TK D Sbjct: 198 DADMMAEIQRLHTAV------SPVETLFVVDSMTGQDAANTAKAFNDALPLTGVVLTKAD 251 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G ARGG + + P+ FLG+GE LEPF + ++ I G D Sbjct: 252 GDARGGAALSVRQITGKPIKFLGMGEKTGALEPFHPERVASRILGMGD 299 >gi|261250232|ref|ZP_05942808.1| signal recognition particle subunit Ffh SRP54 [Vibrio orientalis CIP 102891] gi|260939348|gb|EEX95334.1| signal recognition particle subunit Ffh SRP54 [Vibrio orientalis CIP 102891] Length = 464 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 99/307 (32%), Positives = 156/307 (50%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D +++ L ++ L+ +D+ + V + ++ + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFIKRI--KESA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E I + L ++ N + P VIL+ G+ G GKTT +G Sbjct: 60 VGVEVSKSLTPGQEFIKIVQSELEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KLSK +++ K V++ + D +R AAI QL+ A DF S +A A Sbjct: 119 KLSKLLTERDKKKVLVVSADVYRPAAIKQLETLATDVGVDFFPSTADQKPLDIANAAIDH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DVLI+DTAGRL + +MA I ++ + +P L V+DA TGQ+A Sbjct: 179 AKKKFYDVLIVDTAGRLAVDEQMMAEIQQLHTAI------SPVETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+I+TK+DG ARGG + + P+ FLGVGE + LEPF ++ Sbjct: 233 AKAFGDTLPLTGVILTKVDGDARGGAALSVRHVTGKPIKFLGVGEKTDALEPFHPDRVAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|222615533|gb|EEE51665.1| hypothetical protein OsJ_33001 [Oryza sativa Japonica Group] Length = 550 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 93/304 (30%), Positives = 152/304 (50%), Gaps = 13/304 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +LT G S KL+ G+ D+++ + + +R+ + L+ +D+ + V ++ V + K Sbjct: 74 QLTTGLESAWNKLR-GV-DVLTKENIVEPMRD-IRRALLEADVSLPVVRRFVSSISEKAL 130 Query: 76 AKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKL 131 D + R + +++H L+ L D P VIL+ G+ GVGKTTV KL Sbjct: 131 GSDLIRGVRPEQQLVKIVHDELVKLMGGEVSDLVFAKSGPTVILLAGLQGVGKTTVCAKL 190 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + G ML A D +R AAIDQL I ++ + A + A ++A+ Sbjct: 191 AFYLKKLGKSCMLVAADVYRPAAIDQLTILGEQVGVPVYSEGTEAKPAQITKNAVEEAKR 250 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K +D +++DTAGRL + +M + ++ + + P VL V+DA TGQ A V Sbjct: 251 KNIDAIVMDTAGRLQIDKSMMVELKEVKKAVN------PTEVLLVVDAMTGQEAAALVTT 304 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G TG I+TK+DG +RGG + + P+ F+G GE + DLE F + + Sbjct: 305 FNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKFVGRGERMEDLELFYPDRMAQRVL 364 Query: 312 GCLD 315 G D Sbjct: 365 GMGD 368 >gi|119488999|ref|ZP_01621934.1| Signal recognition particle protein [Lyngbya sp. PCC 8106] gi|119454955|gb|EAW36098.1| Signal recognition particle protein [Lyngbya sp. PCC 8106] Length = 480 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 88/288 (30%), Positives = 148/288 (51%), Gaps = 15/288 (5%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELI 92 D I+ + D +++ + L+ +D+ + V ++ V E+ + V S R +++ Sbjct: 20 DKITESNIQDALKD-VRRALLEADVNLQVVKEFVAEVGEQAQGSQVFSGVRPGEQFVKIV 78 Query: 93 HKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 H L+ + N + P ++L+ G+ G GKTT KL+ + ++ A D Sbjct: 79 HDELVKVMGESNVPLATADSPPTIVLMAGLQGTGKTTATAKLALHLRKENRTALMVATDV 138 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 +R AAIDQLK + + E+GSDA +A + + A+ + VD +IIDTAGRL Sbjct: 139 YRPAAIDQLKTLGQQI--EVPVFELGSDADPVEIARQGVEYAKTQGVDTVIIDTAGRLQI 196 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + +MA + ++ V++ PH L V+DA TGQ A + F+ G +G I+TK+D Sbjct: 197 DQDMMAELARIKAVVQ------PHDTLLVVDAMTGQEAATLTQTFNEQIGISGAILTKLD 250 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G +RGG + I P+ F+GVGE + L+PF + ++ I G D Sbjct: 251 GDSRGGAALSIRRISGAPIKFVGVGEKVEALQPFYPERMASRILGMGD 298 >gi|325294335|ref|YP_004280849.1| signal recognition particle protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064783|gb|ADY72790.1| signal recognition particle protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 448 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 87/283 (30%), Positives = 143/283 (50%), Gaps = 10/283 (3%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY-AKDVSVQRVLYDVSELIHK 94 I L+ G+RE ++ L+ +D+ V ++++ K AK + + +++H Sbjct: 22 IDEETLEKGLRE-IKLALLEADVNYRVVSNFIKDIKEKALGAKVIKGVNPAQQLVKIVHD 80 Query: 95 MLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 L+ + + +P VIL++G+ G GKTT KL+ + G +V+L + D +R Sbjct: 81 ELVQTLGGEAEKLNLKGKPSVILLIGLQGSGKTTTAAKLANYLKKQGKRVLLTSVDVYRP 140 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AA+ QLK D+ E DA +A +A +A+ + DVL++DTAGRLH + L+ Sbjct: 141 AAMLQLKKLGDQIGIPVFLEEKEKDAVKIAKDALLKAKDESYDVLVVDTAGRLHIDEELL 200 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 K+ + P L V+D+ TGQ ++ + F G TG+++TKMD ARG Sbjct: 201 EEARKI------KEEVVPDETLFVIDSMTGQESVNIAKAFDERVGMTGIVLTKMDSDARG 254 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + + P+ F GVGE I+D EPF ++ I G D Sbjct: 255 GVALSVKGVTGKPIKFAGVGEKIDDFEPFYPDRVASRILGMGD 297 >gi|156059506|ref|XP_001595676.1| hypothetical protein SS1G_03765 [Sclerotinia sclerotiorum 1980] gi|154701552|gb|EDO01291.1| hypothetical protein SS1G_03765 [Sclerotinia sclerotiorum 1980 UF-70] Length = 528 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 90/310 (29%), Positives = 153/310 (49%), Gaps = 20/310 (6%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 ++ L S+++ +G +++ + DG+ +E+ L+ +D+ V + + + + Sbjct: 3 LQDLESAHKCCSIRILQGSSNL--DEKAFDGMIKEICSALLEADVNVRLVGNLRKSIKAS 60 Query: 74 RYAKDVS--------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 K+++ +Q+ +YD EL+ K++ P ++PF + +VI+ VG+ G GKT Sbjct: 61 VNFKELAPAVNKKKVIQKAVYD--ELV-KLVDPHAEPFKPK-KGKANVIMFVGLQGAGKT 116 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T KL++ G K L DTFR+ A DQLK A + + S +D A +A E Sbjct: 117 TTCTKLARWYQSRGFKACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAKEG 176 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + + +K +++I+DT+GR L + + +K P + VLDA+ GQ A Sbjct: 177 VDKFKKEKFEIIIVDTSGRHRQEDALFQEMVDIQTAVK------PDQTVMVLDASIGQQA 230 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 Q + F A +I+TK DG A GGG I V P+ F+G GE + DLE F Sbjct: 231 EAQSKAFKETADFGAIIITKTDGHASGGGAISAVAATHTPIVFIGTGEHMLDLEKFAPTQ 290 Query: 306 FSAVITGCLD 315 F + + G D Sbjct: 291 FVSKLLGMGD 300 >gi|325105803|ref|YP_004275457.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pedobacter saltans DSM 12145] gi|324974651|gb|ADY53635.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pedobacter saltans DSM 12145] Length = 448 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 87/274 (31%), Positives = 139/274 (50%), Gaps = 12/274 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKP 102 +E+ L+ +D+ A+ +E+ K ++V S ++L V +LM S Sbjct: 32 KEIRKALLDADVNYKTAKSFTDEVKQKALGQNVLTAISPGQLLTKVMNDELTLLMGGSVT 91 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIW 161 D P +IL+ G+NG GKTT GKL+ + + K +L AGD +R AAIDQL++ Sbjct: 92 -ELDLKQNPTIILIAGLNGAGKTTFTGKLANFLKTQKNKKPLLVAGDVYRPAAIDQLEVL 150 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 A + A+ + D A+A E + +V+IIDTAGRL + LM I ++ + Sbjct: 151 AGQVGAEVYTNRESKDPVAIALEGIAHGKQNGNNVIIIDTAGRLTLDDALMDEIAEVKKA 210 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 P +L V+DA TGQ+A+ + F+ TG+++TK+DG RGG + I Sbjct: 211 TN------PQEILFVVDAMTGQDAVNTAKAFNDRLDFTGVVLTKLDGDTRGGAALSIKSV 264 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE ++ L+ F ++ I G D Sbjct: 265 VNKPIKFVGTGEKMDALDVFYPDRMASRILGMGD 298 >gi|327294833|ref|XP_003232112.1| signal recognition particle 54K protein [Trichophyton rubrum CBS 118892] gi|326466057|gb|EGD91510.1| signal recognition particle 54K protein [Trichophyton rubrum CBS 118892] Length = 534 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 87/301 (28%), Positives = 150/301 (49%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ ++D+ S +D D + +E+ L+ +D+ V + Q++ + + + Sbjct: 9 RINAAVSDLTRSNAVDEKALDAMIKEICAALLSADVNVRLVQQLRKSIKAAVQLPSIPPA 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D +L+ ++ P ++PF + +VI++VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--QLV-ALVDPHAEPFKPK-KGKSNVIMMVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G K L DTFR+ A DQLK A + + S +D ++ E + + ++ Sbjct: 125 YQTKGFKAALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPVVVSSEGVAKFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D++I+DT+GR L A + ++ +K P + VLD+T GQ A Q F + Sbjct: 185 DIIIVDTSGRHRQEEDLFAEMTQIQSAIK------PDQTIMVLDSTIGQAAETQSAAFKS 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V + P+ FLG GE + DLE F + F + G Sbjct: 239 AADFGAIIITKTDGHAAGGGAISAVAATRTPIIFLGTGEHMLDLERFAPRPFVQKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|256843368|ref|ZP_05548856.1| signal recognition particle protein [Lactobacillus crispatus 125-2-CHN] gi|256849811|ref|ZP_05555242.1| signal recognition protein Ffh [Lactobacillus crispatus MV-1A-US] gi|262046944|ref|ZP_06019904.1| signal recognition particle protein [Lactobacillus crispatus MV-3A-US] gi|293381186|ref|ZP_06627194.1| signal recognition particle protein [Lactobacillus crispatus 214-1] gi|256614788|gb|EEU19989.1| signal recognition particle protein [Lactobacillus crispatus 125-2-CHN] gi|256713300|gb|EEU28290.1| signal recognition protein Ffh [Lactobacillus crispatus MV-1A-US] gi|260572926|gb|EEX29486.1| signal recognition particle protein [Lactobacillus crispatus MV-3A-US] gi|290922226|gb|EFD99220.1| signal recognition particle protein [Lactobacillus crispatus 214-1] Length = 476 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 85/269 (31%), Positives = 138/269 (51%), Gaps = 13/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + ++ + + K+V Q+V+ V+E + KM+ + P N Sbjct: 39 LLEADVNFKVVKDFIKTIKKEALGKEVQESLNPGQQVIKIVNEQLTKMMGEEAVPLNKS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 H P +I++VG+ G GKTT +GKL+ + + +L AGD +R AA+DQLK D+ Sbjct: 98 KHIPTIIMMVGLQGTGKTTTVGKLAYHLQKTEKARPLLIAGDIYRPAAVDQLKQIGDQLK 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + D A + + +A+ K D ++IDTAGRL + LM + ++ +V Sbjct: 158 VPVYSEDGEKDVAKIVQDGLAEAEKNKNDYVLIDTAGRLEIDEPLMEELERVKKVTH--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P ++L V+DA TGQ A + F TG+I+TK+DG RGG + I P+ Sbjct: 215 ---PDNILLVVDAMTGQAATDVAKGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE ++DL+ F ++ I G D Sbjct: 272 LFTGQGEKLSDLDVFHPDRMASRILGMGD 300 >gi|320161007|ref|YP_004174231.1| signal recognition particle protein [Anaerolinea thermophila UNI-1] gi|319994860|dbj|BAJ63631.1| signal recognition particle protein [Anaerolinea thermophila UNI-1] Length = 440 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 152/304 (50%), Gaps = 18/304 (5%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L++ T++ +L D V E+ L+ +D+ +V + V + + Sbjct: 2 FETLTQRLEQIFTNLRRRGKLTEQDVDAVMREVRLALLEADVHYSVVKDFVSRVRERAVG 61 Query: 77 KDVSVQRVLYDVSELI----HKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKL 131 +VS R L ++I +++ L +P + + +P +++VG+ G GKTT KL Sbjct: 62 AEVS--RALNPAQQVIKIVHEELIKTLGEPQWLNLTGPKPRALMLVGLQGSGKTTAAAKL 119 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++ + G +V+L A D +R AA+ QL+ ++ V E L +A++ AQ Sbjct: 120 ARLLRSQGERVLLVAADPYRPAAVKQLQTLGEKVGVP-VYYEEKVAPPLLCAKAYEHAQK 178 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 V+I+DTAGR + LMA + + D +P +L V+D+ GQ AL + Sbjct: 179 GGYSVIIMDTAGRSQLDDALMAELKAIT------DKVSPADILLVVDSMIGQEALHVAQG 232 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F TGLIMTKMDG +RGG I I +P+ FLG GEGI+ LE + ++ I Sbjct: 233 FRQAVNLTGLIMTKMDGDSRGGAAISIRSVTGVPIKFLGTGEGIDALEVYDPSRLASRIL 292 Query: 312 GCLD 315 G D Sbjct: 293 GMGD 296 >gi|255722509|ref|XP_002546189.1| signal recognition particle 54 kDa protein [Candida tropicalis MYA-3404] gi|240136678|gb|EER36231.1| signal recognition particle 54 kDa protein [Candida tropicalis MYA-3404] Length = 555 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 94/307 (30%), Positives = 146/307 (47%), Gaps = 45/307 (14%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQK-------------IVEELLTKRYAKDVSVQRVL 85 DD +++ ++D+ L+ SD+ V + K IV+E T K +Q+++ Sbjct: 22 DDEIQQMIKDICGALLESDVNVKLVAKLRGNIKTKIEEGNIVQE--TSAMNKRKKLQKII 79 Query: 86 YD-VSELIHKMLMPLSKPFNWDFSHR-------------PHVILVVGVNGVGKTTVIGKL 131 +D + L+ + P KP + + HVI+ VG+ G GKTT KL Sbjct: 80 FDELCALVDSHVEP-PKPKKLSTTTKTINGKKIRLSKESSHVIMFVGLQGAGKTTSCTKL 138 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + G KV L DTFR+ A DQLK A + + + S + D +A+E ++ + Sbjct: 139 AVYYKKRGFKVGLVCADTFRAGAFDQLKQNAIKANIPYYGSYLEPDPVKIAFEGVQKFKQ 198 Query: 192 KKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 +K D++I+DT+GR L M IG+ ++ P + V+D + GQ A Q Sbjct: 199 EKFDIIIVDTSGRHRQEEQLFTEMVQIGEAVQ---------PTQTIMVMDGSIGQAAESQ 249 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 F + +I+TKMDG A+GGG I V K P+ F+G GE I DLE F F + Sbjct: 250 ARAFKESSNFGSIILTKMDGHAKGGGAISAVAATKTPIVFIGTGEHIGDLEIFKPTTFIS 309 Query: 309 VITGCLD 315 + G D Sbjct: 310 KLLGIGD 316 >gi|300814481|ref|ZP_07094742.1| putative signal recognition particle protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511399|gb|EFK38638.1| putative signal recognition particle protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 321 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 152/308 (49%), Gaps = 25/308 (8%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ + + +L D E++ L+ +D+ V + ++ TK A Sbjct: 3 FESLSEKLQNTLNKLTGKGKLTEKDIDAAMREVKLALLEADVNFKVVKDFIKN--TKERA 60 Query: 77 KDVSV-------QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V Q+V+ V++ + ++ + D+S +P VIL+ G+ G GKTT G Sbjct: 61 LGSQVLESLTPGQQVIKIVNDELKNLMG--KEQVKIDYSKKPTVILMCGLQGAGKTTTAG 118 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--DAAALAYEAFK 187 KL+ KM G + +L A D +R AAI QL++ S D +G D ++ + + Sbjct: 119 KLANKMKQEGKRPLLVACDVYRPAAIKQLQVVG--KSVDVPVFTMGDKIDPVDISKASLE 176 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ DVLIIDTAGRL + LM + + L+ P VL VLD+ TGQ A+ Sbjct: 177 HAKKNGNDVLIIDTAGRLQIDEKLMQELKNIYDALE------PSEVLLVLDSMTGQEAVN 230 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F TG+I+TK+DG ARGG + I +P+ F+ GE ++++E F + Sbjct: 231 VADTFDDTLKLTGVILTKLDGDARGGAALSIRAVTDVPIKFIASGEKMDNIEVFHPDRMA 290 Query: 308 AVITGCLD 315 + I G D Sbjct: 291 SRILGMGD 298 >gi|149246331|ref|XP_001527635.1| signal recognition particle 54 kDa protein [Lodderomyces elongisporus NRRL YB-4239] gi|146447589|gb|EDK41977.1| signal recognition particle 54 kDa protein [Lodderomyces elongisporus NRRL YB-4239] Length = 563 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 107/207 (51%), Gaps = 12/207 (5%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 HVI+ VG+ G GKTT KL+ G KV L DTFR+ A DQLK A + + + Sbjct: 119 HVIMFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNAIKANIPYYG 178 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPH 228 S + D +AYE ++ + +K D++I+DT+GR L M IG+ ++ Sbjct: 179 SYLEPDPVKIAYEGVQKFKHEKFDIIIVDTSGRHRQEEQLFTEMVQIGEAVQ-------- 230 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P + V+D + GQ A Q F A +I+TKMDG A+GGG I V K P+ F Sbjct: 231 -PTQTIMVMDGSIGQAAESQARAFKESADFGSIILTKMDGHAKGGGAISAVAATKTPIVF 289 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +G GE + DLE F F + + G D Sbjct: 290 IGTGEHVGDLEIFKPTTFVSKLLGIGD 316 >gi|295693164|ref|YP_003601774.1| signal recognition particle protein ffh [Lactobacillus crispatus ST1] gi|295031270|emb|CBL50749.1| Signal recognition particle protein Ffh [Lactobacillus crispatus ST1] Length = 476 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 85/269 (31%), Positives = 138/269 (51%), Gaps = 13/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + ++ + + K+V Q+V+ V+E + KM+ + P N Sbjct: 39 LLEADVNFKVVKDFIKTIKKEALGKEVQESLNPGQQVIKIVNEQLTKMMGEEAVPLNKS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 H P +I++VG+ G GKTT +GKL+ + + +L AGD +R AA+DQLK D+ Sbjct: 98 KHIPTIIMMVGLQGTGKTTTVGKLAYHLQKTEKARPLLIAGDIYRPAAVDQLKQIGDQLK 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + D A + + +A+ K D ++IDTAGRL + LM + ++ +V Sbjct: 158 VPVYSEDGEKDVAKIVQDGLAEAEKNKNDYVLIDTAGRLEIDEPLMEELERVKKVAH--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P ++L V+DA TGQ A + F TG+I+TK+DG RGG + I P+ Sbjct: 215 ---PDNILLVVDAMTGQAATDVAKGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE ++DL+ F ++ I G D Sbjct: 272 LFTGQGEKLSDLDVFHPDRMASRILGMGD 300 >gi|224532274|ref|ZP_03672906.1| signal recognition particle protein [Borrelia valaisiana VS116] gi|224511739|gb|EEF82145.1| signal recognition particle protein [Borrelia valaisiana VS116] Length = 444 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 88/276 (31%), Positives = 143/276 (51%), Gaps = 15/276 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF--- 103 E +++ L+ +D+ + V ++ + ++ + ++ V V R + S+ I + L K Sbjct: 32 EIIKNSLVDADVNLRVVRRFLNSIIEE--SRGVKVLRGIDPKSQFIKIVNDNLVKFLGGK 89 Query: 104 NWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 N++ S P IL+VG+ G GKTT KLS ++ KV+L A DTFR+AAI+QLK Sbjct: 90 NYELSLNPINKQSYILMVGLQGSGKTTTCAKLSLRLKKENRKVLLVAADTFRAAAIEQLK 149 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 I + E D + + K A+++ D +I+DT GRL S+L+ I K+ Sbjct: 150 ILGSQIGVPVFSLEGEKDPIKIVKASMKVAESEFFDSVIVDTRGRLEVESLLVEEIKKIK 209 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 +L+ P + VLD+ TGQ A+ + F+ G TG I +K D RGG ++ Sbjct: 210 EILQ------PTETILVLDSMTGQVAVNIAKEFNENVGLTGAIFSKFDSDTRGGAVLSFK 263 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P+ F+GVGE I DL+ F + ++ I G D Sbjct: 264 SICAVPIKFIGVGEKIEDLDSFYPERIASRILGMGD 299 >gi|114567018|ref|YP_754172.1| signal recognition particle protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337953|gb|ABI68801.1| signal recognition particle subunit FFH/SRP54 (srp54) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 448 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 71/205 (34%), Positives = 117/205 (57%), Gaps = 7/205 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P + ++VG+ G GKTT + KL + + G + +L AGD +R AAI QL++ ++ V Sbjct: 101 PSIYMLVGLQGAGKTTTVAKLGRNLLRQGRRPVLVAGDIYRPAAIKQLQVLGEQVGIP-V 159 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 S S+ +A + + A+++ D++I+DTAGRLH N LM + ++ + P Sbjct: 160 FSMGQSNPVDIARASLEYARSQNRDIVILDTAGRLHINEELMDELKQIKSAIN------P 213 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 H +L V+DA TGQ+A+ E F+ G TG+I+TK+DG RGG + + P+ ++G Sbjct: 214 HEILLVVDAMTGQDAVNVAESFNRDLGLTGVILTKLDGDTRGGAALSVKAVTGCPIKYVG 273 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 +GE ++ LE F ++ I G D Sbjct: 274 MGEKLDALETFFPDRMASRILGMGD 298 >gi|170078230|ref|YP_001734868.1| signal recognition particle protein [Synechococcus sp. PCC 7002] gi|169885899|gb|ACA99612.1| signal recognition particle protein [Synechococcus sp. PCC 7002] Length = 478 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 123/224 (54%), Gaps = 20/224 (8%) Query: 83 RVLYDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139 +++YD EL+ M +PL++ N +P VIL+ G+ G GKTT KLS + Sbjct: 76 KIVYD--ELVKIMGESNVPLAEAEN-----KPSVILMAGLQGTGKTTATAKLSLYLRKQN 128 Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVL 197 ++ A D +R AAIDQLK ++ D ++GSDA +A + ++A+ VDV+ Sbjct: 129 KTALMVATDVYRPAAIDQLKTLGEQI--DVPVFDLGSDANPVDIAKQGVEKAKELGVDVV 186 Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257 ++DTAGRL ++ +MA + ++ + P L V+D+ TGQ A FH G Sbjct: 187 LVDTAGRLQIDADMMAELKQIKESIN------PDDTLLVVDSMTGQEAASLTRTFHEEIG 240 Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 TG I+TKMDG RGG + + + P+ F+GVGE + LEPF Sbjct: 241 VTGAILTKMDGDTRGGAALSVRMISGQPIKFIGVGEKVEALEPF 284 >gi|319941756|ref|ZP_08016078.1| ffh protein [Sutterella wadsworthensis 3_1_45B] gi|319804689|gb|EFW01556.1| ffh protein [Sutterella wadsworthensis 3_1_45B] Length = 473 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 85/273 (31%), Positives = 140/273 (51%), Gaps = 17/273 (6%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS---------VQRVLYDVSELIHKMLMPLSKPF 103 L+ +D+ + V ++++ + K ++V V V +++ +I L P + Sbjct: 38 LLEADVALPVVKEVLSRIKEKAMGEEVVGNLNPGQALVGVVQRELTAIIGGDLPPEERSL 97 Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWA 162 N+ P VIL+ G+ G GKTT GKL++ + D KV+ + D +R AAIDQLK Sbjct: 98 NFRV-QPPAVILLAGLQGAGKTTTAGKLARWLVHDEKKKVLTVSCDVYRPAAIDQLKAVT 156 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 ++ AD+ S G +A A +A+ + DVLI+DTAGRL + ++M + + L Sbjct: 157 EQAGADWFPSHTGEKPLDIAAAAVSEARRRFYDVLIVDTAGRLAIDEVMMQEVADLNTFL 216 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 K P L V+DA GQ+A+ + F+ TG+++TK DG +RGG + + Sbjct: 217 K------PAETLFVIDAMLGQDAVNTAKAFNDRLPLTGIVLTKADGDSRGGASLSVRYVT 270 Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + EPF + ++ I G D Sbjct: 271 GKPIKFIGTGEKLGGFEPFDPEAMASRILGMGD 303 >gi|315152349|gb|EFT96365.1| signal recognition particle protein [Enterococcus faecalis TX0031] Length = 472 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 98/309 (31%), Positives = 162/309 (52%), Gaps = 23/309 (7%) Query: 20 GFASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75 F S + +L++ ++ I ++ + V+E + ++ L+ +D+ + V + + + + Sbjct: 2 AFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERAV 61 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129 +V Q+++ V E + K L S+ + S + P VI++ G+ G GKTT G Sbjct: 62 GVEVLESLSPAQQIVKIVDEELTKTLG--SETVELNKSPKIPTVIMMTGLQGAGKTTFTG 119 Query: 130 KLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAF 186 KL+K M + +L AGD +R AAIDQLK+ + + ++G+DA + + Sbjct: 120 KLAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQL--EVPVFDMGTDANPVEIVRQGL 177 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A+ KK D ++IDTAGRLH + LM + K I+ L P+ +L V+DA TGQ+A+ Sbjct: 178 ALAKEKKNDYVLIDTAGRLHIDEALMDEL-KQIKELTN-----PNEILLVVDAMTGQDAV 231 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G TG+++TKMDG RGG + I P+ F+G GE + DLE F Sbjct: 232 NVAVSFNEQLGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRM 291 Query: 307 SAVITGCLD 315 S+ I G D Sbjct: 292 SSRILGMGD 300 >gi|299536774|ref|ZP_07050082.1| signal recognition particle-like (SRP) component [Lysinibacillus fusiformis ZC1] gi|298727786|gb|EFI68353.1| signal recognition particle-like (SRP) component [Lysinibacillus fusiformis ZC1] Length = 452 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 128/235 (54%), Gaps = 8/235 (3%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GL 140 Q+V+ V + + +++ P ++ + P VI++VG+ G GKTT GKL+ + Sbjct: 73 QQVIKIVQDELTELMGGEQSPIKFN-TKPPTVIMMVGLQGAGKTTTTGKLANVLRKKYNR 131 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 K +L A D +R AA+ QL+ + S +A +A + A+ + DV+IID Sbjct: 132 KPLLVAADVYRPAAVQQLQTLGKQLSLPVFALGTEVSPVEIARQAIELAKEEHHDVVIID 191 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRLH + LM + K IR LK P V V+DA TGQ+A+ E F+ G TG Sbjct: 192 TAGRLHIDEDLMQEL-KDIRSLKE-----PDEVFLVVDAMTGQDAVNVAESFNEAIGITG 245 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +++TK+DG RGG + I + P+ F+G+GE ++ LEPF + ++ I G D Sbjct: 246 VVLTKLDGDTRGGAALSIRSVTQKPIKFVGMGEKMDALEPFHPERMASRILGMGD 300 >gi|127511995|ref|YP_001093192.1| signal recognition particle protein [Shewanella loihica PV-4] gi|126637290|gb|ABO22933.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella loihica PV-4] Length = 457 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 155/305 (50%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D ++E L ++ L+ +D+ + V + V + + Sbjct: 2 FENLTDRLSRTLKNISGRGRLTEDNIKETLREVRMALLEADVALPVVRAFVNSVKDRAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V+ Q + V + + ++ N + P VI++ G+ G GKTT + KL Sbjct: 62 QEVTKSLSPGQAFIKIVQSELENAMGEANEALNLS-AQPPAVIMMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 SK + + K V++ + D +R AAI QL+ A+ +F S++ + A A+ Sbjct: 121 SKFLRERQKKSVLVVSADVYRPAAIKQLETLANEVEVEFFPSDVSQKPIDIVDAAMAHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K +DV+I+DTAGRLH + +M I + +K P L V+DA TGQ+A + Sbjct: 181 LKFIDVVIVDTAGRLHVDESMMDEIKALHAAVK------PVETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+++TK+DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|197103583|ref|YP_002128960.1| signal recognition particle protein [Phenylobacterium zucineum HLK1] gi|196477003|gb|ACG76531.1| signal recognition particle protein [Phenylobacterium zucineum HLK1] Length = 508 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 91/289 (31%), Positives = 151/289 (52%), Gaps = 17/289 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH- 93 ++S + +D+ +RE + L+ +D+ + V ++ +++ K A +V R + ++I Sbjct: 23 VLSEKDIDEAMRE-VRVALLEADVALPVVRQFIDK--AKERATGEAVIRSVKPADQVIKI 79 Query: 94 ------KMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 +ML +P S + P VIL+ G+ G GKTT GKL+ ++S KV+LA+ Sbjct: 80 TYDGLVEMLGGDGEPEGLRLSANPPTVILMSGLQGSGKTTTAGKLALRLSKERKKVLLAS 139 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 DT R AA++QL + A + D + G A + A + A+ + DVLI+DTAGR Sbjct: 140 LDTRRPAAMEQLAMLATQAGVDSLPIVPGQSAPDITRRALQAARLQGYDVLILDTAGRTT 199 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + +M+ ++ ++ P L V DA TGQ+A+R + FH TGL++T+ Sbjct: 200 LDEAMMSEAAEIAKI------SNPSETLLVADALTGQDAVRTAKAFHERLPLTGLVLTRA 253 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG RGG + + +P+ FLGV E I+ L+ F A + I G D Sbjct: 254 DGDGRGGAALSMRAVTGLPIKFLGVSEKIDGLDAFDAHRVAGRILGRGD 302 >gi|262369269|ref|ZP_06062597.1| GTP-binding signal recognition particle protein [Acinetobacter johnsonii SH046] gi|262315337|gb|EEY96376.1| GTP-binding signal recognition particle protein [Acinetobacter johnsonii SH046] Length = 468 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 94/307 (30%), Positives = 158/307 (51%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72 F + + +L + + ++ S +L +D +++ L ++ L+ +D+ + V + K+ EE L Sbjct: 2 FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN--WDFSHRPHVI-LVVGVNGVGKTTVIG 129 + +S + +++H L + N D + +P V+ L+ G+ G GKTT Sbjct: 62 QEVMTQLSPGQAFV---KIVHDELTKMMGEANESLDLAAKPPVVVLLAGLQGAGKTTTAA 118 Query: 130 KLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL++ + + KV + + D +R AAI QL+ A A F S +A A +Q Sbjct: 119 KLARFLQERQKKKVAMVSADVYRPAAIKQLQTVAGEVGAIFFESSADEKPITIATRAIEQ 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ + DVLI+DTAGRLH + +M I ++ +K P L V+DA TGQ+A Sbjct: 179 AKIQFADVLIVDTAGRLHVDDEMMDEIKELHAAIK------PTETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F+ TG+I+TK DG ARGG + + P+ FLG+GE ++ LEPF + + Sbjct: 233 AKAFNDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPFHPERVAQ 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|46198982|ref|YP_004649.1| signal recognition particle protein ffh [Thermus thermophilus HB27] gi|55981005|ref|YP_144302.1| signal recognition particle protein [Thermus thermophilus HB8] gi|46196606|gb|AAS81022.1| signal recognition particle protein ffh [Thermus thermophilus HB27] gi|55772418|dbj|BAD70859.1| signal recognition particle protein [Thermus thermophilus HB8] Length = 434 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 93/304 (30%), Positives = 147/304 (48%), Gaps = 18/304 (5%) Query: 21 FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F + +L+E I + R+ + G E+ LI +D+ + VA+ VEE+ + Sbjct: 2 FQQLAARLQEAIDRLRGRGRITEEDLKGTLREIRRALIEADVNLEVARAFVEEVRERALG 61 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + V + VL V E + + L +P + R +V +VG+ G GKTT KL Sbjct: 62 RKVLESLTPAEVVLATVYEALKEALG--GEPKHPQLKDR-NVWFLVGLQGSGKTTTAAKL 118 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + G + +L A DT R AA +QL++ ++ + + G ++ ++A+ Sbjct: 119 ALYYKGKGRRPLLVAADTQRPAAREQLRVLGEKVGVPVLEVQDGESPESIRRRVEERARL 178 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + D++++DTAGRL + LM + ++ L+ P VL VLDA TGQ AL + Sbjct: 179 EVRDLVLVDTAGRLQIDERLMEELVRLKAALR------PDEVLLVLDAMTGQEALSVAQA 232 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F G TGL++TK+DG ARGG + P+YF GV E LEPF + I Sbjct: 233 FDERVGVTGLVLTKLDGDARGGAALSARRVTGKPIYFAGVSERPEGLEPFYPDRLAGRIL 292 Query: 312 GCLD 315 G D Sbjct: 293 GMGD 296 >gi|115433004|ref|XP_001216639.1| signal recognition particle 54 kDa protein [Aspergillus terreus NIH2624] gi|114189491|gb|EAU31191.1| signal recognition particle 54 kDa protein [Aspergillus terreus NIH2624] Length = 526 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 145/301 (48%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ + D+ S LD D + +E+ L+ +D+ V + Q + + + L Sbjct: 9 RINAAVNDLTRSNNLDEKAFDDMLKEICAALLSADVNVRLVQSLRKSIKSSVNFASLPSA 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D EL+ ++ P ++PF R +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--ELV-ALVNPHAEPFRPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G K L DTFR+ A DQLK A + + S +D A +A E + + ++ Sbjct: 125 YQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAAEGVAKFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 +++I+DT+GR L + ++ + P + VLD+T GQ A Q F A Sbjct: 185 EIIIVDTSGRHKQEEELFTEMTQIQTAV------TPDQTILVLDSTIGQAAEAQSAAFKA 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V P+ FLG GE + DLE F K F + G Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMMDLERFEPKAFIQKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|50084052|ref|YP_045562.1| GTP-binding signal recognition particle protein [Acinetobacter sp. ADP1] gi|49530028|emb|CAG67740.1| 4.5S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNA [Acinetobacter sp. ADP1] Length = 470 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 158/304 (51%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + ++ S +L +D +++ L ++ L+ +D+ + V ++ + ++ + Sbjct: 2 FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEQALG 61 Query: 77 KDVSVQRVLYDV-SELIHKMLMPLSKPFN--WDFSHRPHVI-LVVGVNGVGKTTVIGKLS 132 ++V Q +++H L + N D + +P V+ L+ G+ G GKTT KL+ Sbjct: 62 QEVMTQLSPGQAFVKIVHDELTKMMGEANESLDLAAKPPVVVLLAGLQGAGKTTTAAKLA 121 Query: 133 KKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + + KV + + D +R AAI QL+ A A F S +A A +QA+ Sbjct: 122 RFLQERQKKKVAMVSADVYRPAAIKQLQTVAAEVGAMFFESNANEKPIDIANRAIEQAKI 181 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + DVLI+DTAGRLH + +M I ++ +K P L V+DA TGQ+A + Sbjct: 182 QFADVLIVDTAGRLHVDEDMMGEIKELHASIK------PTETLFVVDAMTGQDAANTAKA 235 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ TG+I+TK DG ARGG + + P+ FLG+GE ++ LEPF + + I Sbjct: 236 FNDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPFHPERIAQRIL 295 Query: 312 GCLD 315 G D Sbjct: 296 GMGD 299 >gi|169350198|ref|ZP_02867136.1| hypothetical protein CLOSPI_00942 [Clostridium spiroforme DSM 1552] gi|169292981|gb|EDS75114.1| hypothetical protein CLOSPI_00942 [Clostridium spiroforme DSM 1552] Length = 465 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 152/303 (50%), Gaps = 14/303 (4%) Query: 21 FASTSLKLKEGITDIISSRRLDDGVREELED----LLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L+ + + RL + EE+ L+ +D+ V ++ + K Sbjct: 3 FDSLSERLQGTLKKVSGQGRLTEKNMEEMLSEIRLALLEADVNFQVVKEFIAATKEKALG 62 Query: 77 KDV-SVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 +DV + V +++H L+ L + D++ +P VI++VG+ G GKTT GK++ Sbjct: 63 QDVLGSLKPGQVVVKIVHDELVELLGTTVATIDYNKKPTVIMMVGLQGSGKTTTAGKIAN 122 Query: 134 KMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 +S G K +L A D +R AA+DQLK ++ + A ++ EA + A+ Sbjct: 123 LISKKNGKKPLLVAADIYRPAAVDQLKTLGEQLNIPVYEKGTSQSAESIVEEAMRFAREN 182 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 DV+IIDTAGRLH + LM + + + PH +L V+DA TGQ+ + F Sbjct: 183 NNDVIIIDTAGRLHIDEPLMQELSNIKEIAH------PHEILLVVDALTGQDIVNVASSF 236 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + TG ++TK+DG +RGGG + I +P+ F+G GE ++ ++ F + I G Sbjct: 237 NEQLSITGAVLTKLDGDSRGGGALSIRHITHVPIKFIGTGEKLDAIDLFYPDRMADRILG 296 Query: 313 CLD 315 D Sbjct: 297 MGD 299 >gi|218887972|ref|YP_002437293.1| signal recognition particle protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758926|gb|ACL09825.1| signal recognition particle protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 518 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 155/308 (50%), Gaps = 24/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRLD-----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F S S +L + RLD DG+RE + L+ +D+ V + +E + + Sbjct: 2 FDSLSDRLTGVFRKFTGTGRLDEANIQDGLRE-VRLALLEADVNFKVVRDFIERVRERCL 60 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTV 127 +DV Q+V+ +++H L+ L R P+VI++VG+ G GKTT Sbjct: 61 GQDVLKSLTPAQQVV----KIVHDELVELLGGGTTQLDLRGKQPYVIMMVGLQGSGKTTS 116 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 K++ + ++ L D +R AAIDQL A + S G + +A A + Sbjct: 117 SAKIANLLRKQKMRPYLVPADVYRPAAIDQLHTLAKQLDIPAYPSAPGMNPVDIAVAAVE 176 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ K+ +V+I+DTAGRLH + LM +++ + R++ P +L V DA TGQ+A+ Sbjct: 177 DAREKQCNVVIVDTAGRLHIDETLMQ---ELVSIKGRVE---PQEILFVADAMTGQDAVT 230 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 E F+ +G+++TKMDG ARGG + I PV F+G+GE ++D+E F + Sbjct: 231 VAESFNTALDISGVVLTKMDGDARGGAALSIRSVTGKPVKFVGMGEKLSDIEVFHPDRVA 290 Query: 308 AVITGCLD 315 I G D Sbjct: 291 GRILGMGD 298 >gi|159901134|ref|YP_001547381.1| signal recognition particle protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894173|gb|ABX07253.1| signal recognition particle protein [Herpetosiphon aurantiacus ATCC 23779] Length = 449 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 89/262 (33%), Positives = 143/262 (54%), Gaps = 14/262 (5%) Query: 57 DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVIL 115 D V ++ + E +TK V ++++D EL+H +L + P N + +P +++ Sbjct: 50 DFVARVREQAIGEEVTKSLTPGQQVIKIVHD--ELVH-LLGDANVPINESKNREQPTIVM 106 Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 +VG+ G GKTT+ KL+ M G +L A D +R AAI QL+ + + V SE G Sbjct: 107 LVGLQGAGKTTMAAKLALYMRKKGKTPLLVAADIYRPAAIKQLETLGKQLNIP-VYSE-G 164 Query: 176 SDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 ++ A +A A +QA+ + +I+DTAGRL + LM ++ +V++R+ P + Sbjct: 165 TEVAPPDIAEHALRQARINGNNFVIVDTAGRLQIDERLMT---ELQQVVERI---GPTEI 218 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 + V+DA GQ +++ E FHA TGLIMTK+DG ARGG + + +P+ FLG GE Sbjct: 219 MLVVDAMIGQESVKVAEAFHAKVPLTGLIMTKIDGDARGGAALSMREVTGVPIKFLGTGE 278 Query: 294 GINDLEPFVAKDFSAVITGCLD 315 + +EPF + I G D Sbjct: 279 KTDAIEPFHPDRLAQRILGMGD 300 >gi|45359114|ref|NP_988671.1| signal recognition particle protein Srp54 [Methanococcus maripaludis S2] gi|74579561|sp|Q6LX03|SRP54_METMP RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|45047989|emb|CAF31107.1| signal recognition particle protein SRP54 [Methanococcus maripaludis S2] Length = 450 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 89/278 (32%), Positives = 150/278 (53%), Gaps = 22/278 (7%) Query: 39 RRLDDGVREELEDLLIRSDIGV--------AVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90 ++L V ++++ LI+SD+ V + +K ++E K +K + +++YD E Sbjct: 24 KKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIDEAPPKGLSKKEHIVKIVYD--E 81 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 L+ K+L ++ D S + VIL++G+ G GKTT KL++ + GL+ L A D + Sbjct: 82 LV-KLLGETTQKLELDPSKK-SVILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVY 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAA-LAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 R AA QLK +++ + E + + E ++ KKVDV+IIDTAGR Sbjct: 140 RPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGMEKL--KKVDVIIIDTAGRHKEEE 197 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF-HAVAGTTGLIMTKMDG 268 L+A + +M D P+ ++ V+D T GQ A Q + F +V+ +++TK+DG Sbjct: 198 GLLAEMKEM------KDLTNPNEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKLDG 251 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +A+GGG + V P+ F+G GEG+++LE F K F Sbjct: 252 SAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKF 289 >gi|39976193|ref|XP_369487.1| conserved hypothetical protein [Magnaporthe oryzae 70-15] gi|145011749|gb|EDJ96405.1| conserved hypothetical protein [Magnaporthe oryzae 70-15] Length = 510 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 150/297 (50%), Gaps = 20/297 (6%) Query: 27 KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS------ 80 ++ ++D+ + LD+ + ++ L+ +D+ V + ++ + + + K++ Sbjct: 9 RINAAVSDLTRAPNLDE--KAKICAALLEADVNVRLVGQLRKSIKSTVNFKELPPAVNKK 66 Query: 81 --VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138 +Q+ ++D EL+ ++ P ++PF + +VI+ VG+ G GKTT KL++ Sbjct: 67 RLIQKAVFD--ELVS-LVDPHAEPFKPK-KGKSNVIMFVGLQGAGKTTTCTKLARHYQSR 122 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 G K L DTFR+ A DQLK A + + S +D A +A E + + ++ +V+I Sbjct: 123 GFKACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAVVAREGVDKFKKERFEVII 182 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +DT+GR S L + + + +K P + VLDA+ GQ A Q + F A Sbjct: 183 VDTSGRHRQESALFQEMMDIQKAVK------PDETIMVLDASIGQQAEAQAKAFKEAADF 236 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK DG A GGG I V P+ F+G GE + DLE F + F + + G D Sbjct: 237 GAIIITKTDGHASGGGAISAVAATHTPIVFIGTGEHMLDLERFAPQQFISKLLGMGD 293 >gi|320106880|ref|YP_004182470.1| signal recognition particle protein [Terriglobus saanensis SP1PR4] gi|319925401|gb|ADV82476.1| signal recognition particle protein [Terriglobus saanensis SP1PR4] Length = 460 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 96/291 (32%), Positives = 145/291 (49%), Gaps = 24/291 (8%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKP 102 E+ L+ SD+ + V ++E + K V+ ++V+ V + + ++L + Sbjct: 33 EIRLALLESDVNLNVVGTLIEHVREKALGTQVATALSPTEQVIKIVHDELVEILGRDTAR 92 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 F + S P VIL+ G+ G GKTT GKL+ + G + ML + D +R AA QL+I A Sbjct: 93 FKF-ASQPPTVILMAGLQGSGKTTTSGKLAAWLKKGGHRPMLVSVDVYRPAARQQLEIVA 151 Query: 163 DRTSADFVCSEIGSDAAA------LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 SA ++ + A LA EA ++A DVLI+DTAGRL + LM + Sbjct: 152 KSISAQIYLGDLKGEPAGTPLVERLAREAKREAANFGCDVLIVDTAGRLGIDQPLMDEMA 211 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + ++L P +L V DA TGQ+A+ + FH G TG+++TKMDG ARGG + Sbjct: 212 SLKKLLN------PSEILFVADAMTGQDAVNSADAFHKQLGITGVVLTKMDGDARGGAAL 265 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG------CLDYGEEKI 321 I PV F+G GE + E F + I G L+ EEK+ Sbjct: 266 SIRNVTGAPVKFIGTGEKPDAFEAFHPDRIVSRIMGMGDVATLLERAEEKL 316 >gi|288817542|ref|YP_003431889.1| signal recognition particle GTPase [Hydrogenobacter thermophilus TK-6] gi|288786941|dbj|BAI68688.1| signal recognition particle GTPase [Hydrogenobacter thermophilus TK-6] gi|308751145|gb|ADO44628.1| signal recognition particle protein [Hydrogenobacter thermophilus TK-6] Length = 436 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 75/203 (36%), Positives = 115/203 (56%), Gaps = 7/203 (3%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 V++ VG+ G GKTT IGKL+ + + KV +++ D R AA+ QL+ A++ + Sbjct: 97 VVIFVGLQGTGKTTTIGKLANFLKNQSFKVAVSSTDVRRPAAMLQLQRLAEKVGVPYYSF 156 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 + S +A +A ++A+ + VD L+IDTAGRLH + LM + ++ +K P Sbjct: 157 DEAS-PVEIATKALERAKKEGVDYLLIDTAGRLHIDEELMEELKRIKEAVK------PSE 209 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 V+ V DA GQ ALR ++ FH TG+I+TKMDG ARGG + + +P+ F+GVG Sbjct: 210 VIYVADAMQGQEALRALKAFHESITLTGVILTKMDGDARGGVALSVKEAIGVPIKFVGVG 269 Query: 293 EGINDLEPFVAKDFSAVITGCLD 315 E + D+E F + I G D Sbjct: 270 EKLEDIEIFYPDRIAQRILGLGD 292 >gi|260432705|ref|ZP_05786676.1| signal recognition particle protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416533|gb|EEX09792.1| signal recognition particle protein [Silicibacter lacuscaerulensis ITI-1157] Length = 502 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 85/269 (31%), Positives = 140/269 (52%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA+ V+++ + + V+ Q+V+ V + + L P Sbjct: 38 LLEADVSLPVARAFVKKVQEQATGQAVTKSITPGQQVVKIVHDALVDTLRGEEDPGKLKI 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P IL+VG+ G GKTT GKL+K++ + G KV++A+ D +R AA+DQL + + Sbjct: 98 DNPPAPILMVGLQGSGKTTTTGKLAKRLKEKEGKKVLMASLDVYRPAAMDQLAVLGTQIG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G +A A +QA DV ++DTAGRLH + +LM + ++ V+ Sbjct: 158 VDTLPIVPGQKPVDIAKRAKQQATLGGYDVYMLDTAGRLHIDEVLMDEVEQVRNVVD--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+D TGQ A+ E F A G +G+++T+MDG RGG + + P+ Sbjct: 215 ---PRETLLVVDGLTGQVAVEVAEEFDAKVGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ LE F + I G D Sbjct: 272 RFVGLGEKMDALETFEPDRIAGRILGMGD 300 >gi|332981635|ref|YP_004463076.1| signal recognition particle subunit FFH/SRP54 (srp54) [Mahella australiensis 50-1 BON] gi|332699313|gb|AEE96254.1| signal recognition particle subunit FFH/SRP54 (srp54) [Mahella australiensis 50-1 BON] Length = 438 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 86/279 (30%), Positives = 149/279 (53%), Gaps = 16/279 (5%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML 96 V+E + D+ L+ +D+ AV ++ V ++ K + V Q+V+ V+E + +++ Sbjct: 23 VKEAMRDVRMALLEADVNYAVVKEFVNKVTEKAIGQGVLESLTPGQQVIKIVNEQLIELM 82 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 W S P VI++VG+ G GKTT KL+ ++ G +L A D +R AA+ Sbjct: 83 GSSQSKIKW-ASAPPTVIMMVGLQGSGKTTTSAKLAGYLAKQGKNPLLVACDIYRPAAVK 141 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL+I + + E G++ A++ +A + A+ DV+I+DTAGRLH + +M + Sbjct: 142 QLQIVGQKVNIPVFSLE-GANPVAISQQALEYAKKHSNDVVILDTAGRLHIDDEMMQELE 200 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + + H P +L V+DA TGQ+A+ + F+ G+++TK+DG RGG + Sbjct: 201 DI-----KSSVH-PDEILLVVDAMTGQDAVNVAKNFNERLAIDGVVLTKLDGDTRGGAAL 254 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + P+ F+G+GE ++DLEPF ++ I G D Sbjct: 255 SVKAVTGKPIKFVGMGEKLDDLEPFHPDRIASRILGMGD 293 >gi|84394289|ref|ZP_00993014.1| signal recognition particle protein [Vibrio splendidus 12B01] gi|86146312|ref|ZP_01064636.1| signal recognition particle protein [Vibrio sp. MED222] gi|84375092|gb|EAP92014.1| signal recognition particle protein [Vibrio splendidus 12B01] gi|85835791|gb|EAQ53925.1| signal recognition particle protein [Vibrio sp. MED222] Length = 464 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 101/306 (33%), Positives = 154/306 (50%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D ++E L ++ L+ +D+ + V + V+ + K A Sbjct: 2 FDNLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVRDFVKRV--KEGA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPH-VILVVGVNGVGKTTVIGK 130 V V + L E I + L D + +P VIL+ G+ G GKTT +GK Sbjct: 60 VGVEVSKSLTPGQEFIKIVQAELEAVMGESNEALDLAAQPPAVILMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 LSK +++ K V++ + D +R AAI QL+ A DF S +A A A Sbjct: 120 LSKLLTERDKKKVLVVSADVYRPAAIKQLETLASDVGVDFFPSSADQKPLDIANAAIDHA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVLI+DTAGRL + +M I ++ +K P L V+DA TGQ+A Sbjct: 180 KKKFYDVLIVDTAGRLAIDEEMMGEIKELHTAIK------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK+DG ARGG + + P+ FLGVGE + LEPF ++ Sbjct: 234 KAFGDTLPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|227878849|ref|ZP_03996756.1| Sec family type I general secretory pathway protein signal recognition particle protein [Lactobacillus crispatus JV-V01] gi|227861597|gb|EEJ69209.1| Sec family type I general secretory pathway protein signal recognition particle protein [Lactobacillus crispatus JV-V01] Length = 476 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/269 (31%), Positives = 138/269 (51%), Gaps = 13/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + ++ + + K+V Q+V+ V+E + KM+ + P N Sbjct: 39 LLEADVNFKVVKDFIKTIKKEALGKEVQESLNPGQQVIKIVNEQLTKMMGEEAVPLNKS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 H P +I++VG+ G GKTT +GKL+ + + +L AGD +R AA+DQLK D+ Sbjct: 98 KHIPTIIMMVGLQGTGKTTTVGKLAYHLQKTEKARPLLIAGDIYRPAAVDQLKQIGDQLK 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + D A + + +A+ K D ++IDTAGRL + LM + ++ +V Sbjct: 158 VPVYSEDGEKDVAKIVQDGLAEAEKNKNDYVLIDTAGRLEIDEPLMEELERVKKVAH--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P ++L V+DA TGQ A + F TG+I+TK+DG RGG + I P+ Sbjct: 215 ---PDNILLVVDAMTGQAATDVAKGFDERLDITGVILTKLDGDTRGGAALSIRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE ++DL+ F ++ I G D Sbjct: 272 LFTGQGEKLSDLDVFHPDRMASRILGMGD 300 >gi|7799381|emb|CAB90997.1| signal recognition particle 54Kd homolog [Buchnera aphidicola] Length = 451 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 95/306 (31%), Positives = 166/306 (54%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + II+ RL ++ ++E E+ L+ +D+ ++V +K +E + K Sbjct: 2 FNNLTQRLSDSLKKIINKGRLTEENIKETIREVRKALLEADVALSVIKKFIENVKKKSIG 61 Query: 77 KDVSVQRVLYDVSELI----HKMLMPL-SKPFNWDFS-HRPHVILVVGVNGVGKTTVIGK 130 +++ + L E I H+++ + K + +FS P VILVVG+ G GKTT + K Sbjct: 62 HEIN--KSLTPGQEFIKIVKHELIFAMGEKNHSLNFSIEPPAVILVVGLQGSGKTTSLAK 119 Query: 131 L-SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L + K+++ + DT+R+AAI+QLKI +D+ DF S+ + + A K A Sbjct: 120 LGKWIKNKYKKKILITSTDTYRAAAIEQLKILSDQIEIDFFESDKHNTPIEITKNAIKYA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVL+IDTAGRLH + +M I ++ + K ++ L ++D+ GQ+A+ Sbjct: 180 KLKLYDVLLIDTAGRLHIDKKMMNEIQQIQVISKAIE------TLLIVDSMMGQDAINMA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 ++F+ +G+I+TK DG +R G + + P+ F+G GE I LEPF + + Sbjct: 234 KIFNNDLLISGIILTKTDGDSRSGIALSMRYITGKPIKFIGTGEKIISLEPFHPERIADR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMND 299 >gi|114564085|ref|YP_751599.1| signal recognition particle protein [Shewanella frigidimarina NCIMB 400] gi|114335378|gb|ABI72760.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella frigidimarina NCIMB 400] Length = 457 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 155/308 (50%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + +I RL +D ++E L ++ L+ +D+ + V + V + + Sbjct: 2 FENLSDRLSRTLKNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFVNSVKERAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++VS Q + V + K + ++ + + P VI++ G+ G GKTT + KL Sbjct: 62 QEVSKSLSPGQAFIKIVQNELEKAMGEANEALDL-AAIPPAVIMMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + K V++ + D +R AAI QL+ A +F S++ +A A A+ Sbjct: 121 GKFLRTRHKKSVLVVSADVYRPAAIKQLETLATEVEVEFFPSDVSQKPVDIAKAAINYAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K +DV+I+DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 181 LKFIDVVIVDTAGRLHVDEAMMDEIKQL---------HATVNPVETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF + Sbjct: 232 TAKAFNEALPLTGVILTKVDGDARGGAALSIRSITGKPIKFLGVGEKTDALEPFHPDRIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|18394225|ref|NP_563970.1| ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT); 7S RNA binding / GTP binding / mRNA binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] gi|586036|sp|P37106|SR541_ARATH RecName: Full=Signal recognition particle 54 kDa protein 1; Short=SRP54 gi|5103829|gb|AAD39659.1|AC007591_24 Identical to gb|L19997 signal recognition particle 54 kDa subunit (Srp54-1) from Arabidopsis thaliana. ESTs gb|T88590 and gb|T20603 come from this gene gi|12745001|gb|AAK06880.1|AF344329_1 unknown protein [Arabidopsis thaliana] gi|304111|gb|AAA19728.1| signal recognition particle 54 kDa subunit [Arabidopsis thaliana] gi|21592315|gb|AAM64266.1| signal recognition particle 54 kDa protein 2 (SRP54), putative [Arabidopsis thaliana] gi|62320715|dbj|BAD95382.1| putative signal recognition particle 54 kDa subunit [Arabidopsis thaliana] gi|332191180|gb|AEE29301.1| Signal recognition particle protein 1 [Arabidopsis thaliana] Length = 479 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 91/290 (31%), Positives = 145/290 (50%), Gaps = 19/290 (6%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKRYAKDVSVQRVLY 86 II + L+D + E + L++SD+ + +K+ + L + K + +++ ++ Sbjct: 22 IIDEKVLNDFLNE-ITRALLQSDVSFGLVEKMQTNIKKIVNLDDLAAGHNKRLIIEQAIF 80 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 EL +ML P KP +P V++ VG+ G GKTT K + G K L Sbjct: 81 --KELC-RMLDP-GKPAFAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVC 136 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 DTFR+ A DQLK A + F S SD +A E + + +K D++I+DT+GR Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRHK 196 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + L +M +V + +P V+ V+D++ GQ A Q E F +I+TKM Sbjct: 197 QAASLFE---EMRQVAEATEPDL---VIFVMDSSIGQAAFEQAEAFKETVSVGAVIITKM 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316 DG A+GGG + V K PV F+G GE +++ E F K F + + G D+ Sbjct: 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGKGDW 300 >gi|218710520|ref|YP_002418141.1| Signal recognition particle protein [Vibrio splendidus LGP32] gi|218323539|emb|CAV19739.1| Signal recognition particle protein [Vibrio splendidus LGP32] Length = 470 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 101/306 (33%), Positives = 154/306 (50%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D ++E L ++ L+ +D+ + V + V+ + K A Sbjct: 8 FDNLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVRDFVKRV--KEGA 65 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPH-VILVVGVNGVGKTTVIGK 130 V V + L E I + L D + +P VIL+ G+ G GKTT +GK Sbjct: 66 VGVEVSKSLTPGQEFIKIVQAELEAVMGESNEALDLAAQPPAVILMAGLQGAGKTTSVGK 125 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 LSK +++ K V++ + D +R AAI QL+ A DF S +A A A Sbjct: 126 LSKLLTERDKKKVLVVSADVYRPAAIKQLETLASDVGVDFFPSSADQKPLDIANAAIDHA 185 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVLI+DTAGRL + +M I ++ +K P L V+DA TGQ+A Sbjct: 186 KKKFYDVLIVDTAGRLAIDEEMMGEIKELHTAIK------PVETLFVVDAMTGQDAANTA 239 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK+DG ARGG + + P+ FLGVGE + LEPF ++ Sbjct: 240 KAFGDTLPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASR 299 Query: 310 ITGCLD 315 I G D Sbjct: 300 ILGMGD 305 >gi|86159726|ref|YP_466511.1| signal recognition particle subunit FFH/SRP54 (srp54) [Anaeromyxobacter dehalogenans 2CP-C] gi|85776237|gb|ABC83074.1| signal recognition particle subunit FFH/SRP54 (srp54) [Anaeromyxobacter dehalogenans 2CP-C] Length = 550 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 99/317 (31%), Positives = 156/317 (49%), Gaps = 24/317 (7%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + ++KGF + KLK G T+I + +DD +R+ + L+ +D+ V ++ V + Sbjct: 1 MLETVSKGFKAARNKLK-GRTEI-TPEVVDDALRD-IRVSLLEADVSFDVVKRFVARVRE 57 Query: 73 KRYAKDVSVQ--------RVLYD--VSELIHKMLMPLSKPFNWDFSH----RPHVILVVG 118 K + V + RV ++ H L L P + RP I++VG Sbjct: 58 KAIGEVVETKIKTEKGQLRVTPQDHFVKICHDELEALMGPVDTSLRQGERGRPTGIMMVG 117 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 + G GKTT GK++ ++ G +VML A D +R AA+DQLK+ +R V E G Sbjct: 118 LQGSGKTTTAGKIANRLLKDGKQVMLVAADVYRPAAVDQLKVLGERLGVP-VFHEPGVSP 176 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 + AF+ AQ + + +I DTAGRL + LM + + + AP ++L V D Sbjct: 177 PDMCRHAFEAAQREHRNAVIYDTAGRLAIDDELMTELENIKANV------APENILLVAD 230 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A GQ+A++ F G I+TK+DG ARGG + I P+ FLG+GE ++ L Sbjct: 231 AMIGQDAVKTASEFDRRLAIDGFILTKLDGDARGGAALSIKEVTGKPIKFLGMGEALDRL 290 Query: 299 EPFVAKDFSAVITGCLD 315 E F + ++ I G D Sbjct: 291 EEFRPEGLASRILGFGD 307 >gi|170725614|ref|YP_001759640.1| signal recognition particle protein [Shewanella woodyi ATCC 51908] gi|169810961|gb|ACA85545.1| signal recognition particle protein [Shewanella woodyi ATCC 51908] Length = 457 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 94/308 (30%), Positives = 154/308 (50%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V+E L ++ L+ +D+ + V + V + + Sbjct: 2 FENLTDRLSRSLKNISGRGRLTEDNVKETLREVRMALLEADVALPVVRDFVNSVKERAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++VS Q + V + + ++ + + P VI++ G+ G GKTT + KL Sbjct: 62 QEVSKSLSPGQAFIKIVQSELENAMGEANEALDLS-AQPPAVIMMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 SK + + K V++ + D +R AAI QL+ A +F S++ + A A+ Sbjct: 121 SKFLREREKKSVLVVSADVYRPAAIKQLETLATEVEVEFFPSDVSQKPIDIVNAAMAHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K +DV+I+DTAGRLH + +M I + HA P L V+DA TGQ+A Sbjct: 181 LKFIDVVIVDTAGRLHVDESMMDEIKAL---------HAAVNPVETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG ARGG + I P+ FLGVGE + LEPF + Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFYPDRVA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|197123778|ref|YP_002135729.1| signal recognition particle protein [Anaeromyxobacter sp. K] gi|196173627|gb|ACG74600.1| signal recognition particle protein [Anaeromyxobacter sp. K] Length = 550 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 99/317 (31%), Positives = 156/317 (49%), Gaps = 24/317 (7%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + ++KGF + KLK G T+I + +DD +R+ + L+ +D+ V ++ V + Sbjct: 1 MLETVSKGFKAARNKLK-GRTEI-TPEVVDDALRD-IRVSLLEADVSFDVVKRFVARVRE 57 Query: 73 KRYAKDVSVQ--------RVLYD--VSELIHKMLMPLSKPFNWDFSH----RPHVILVVG 118 K + V + RV ++ H L L P + RP I++VG Sbjct: 58 KAIGEVVETKVKTEKGQLRVTPQDHFVKICHDELEALMGPVDTSLRQGERGRPTGIMMVG 117 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 + G GKTT GK++ ++ G +VML A D +R AA+DQLK+ +R V E G Sbjct: 118 LQGSGKTTTAGKIANRLLKDGKQVMLVAADVYRPAAVDQLKVLGERLGVP-VFHEPGVSP 176 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 + AF+ AQ + + +I DTAGRL + LM + + + AP ++L V D Sbjct: 177 PDMCRHAFEAAQREHRNAVIYDTAGRLAIDDELMTELENIKANV------APENILLVAD 230 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A GQ+A++ F G I+TK+DG ARGG + I P+ FLG+GE ++ L Sbjct: 231 AMIGQDAVKTATEFDRRLAIDGFILTKLDGDARGGAALSIKEVTGKPIKFLGMGEALDRL 290 Query: 299 EPFVAKDFSAVITGCLD 315 E F + ++ I G D Sbjct: 291 EEFRPEGLASRILGFGD 307 >gi|296113557|ref|YP_003627495.1| signal recognition particle subunit FFH/SRP54 [Moraxella catarrhalis RH4] gi|295921251|gb|ADG61602.1| signal recognition particle subunit FFH/SRP54 [Moraxella catarrhalis RH4] gi|326568604|gb|EGE18675.1| signal recognition particle protein [Moraxella catarrhalis BC7] gi|326568729|gb|EGE18799.1| signal recognition particle protein [Moraxella catarrhalis BC8] gi|326572598|gb|EGE22587.1| signal recognition particle protein [Moraxella catarrhalis CO72] gi|326574194|gb|EGE24142.1| signal recognition particle protein [Moraxella catarrhalis 101P30B1] gi|326574979|gb|EGE24908.1| signal recognition particle protein [Moraxella catarrhalis O35E] Length = 514 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 95/291 (32%), Positives = 152/291 (52%), Gaps = 32/291 (10%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIV---------EELLTKRYAKDVSVQRVLYD-V 88 +D +++ L ++ L+ +D+ + VA+ V +E+L K A + +++YD + Sbjct: 24 EDNIKDTLREVRMALLEADVALPVARNFVARVKEQALGQEVL-KELAPGQAFVKIVYDEL 82 Query: 89 SELI---HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVML 144 +E++ ++ L KP P V L+ G+ G GKTT GKL+K + D KVML Sbjct: 83 TEMMGSANQTLEMTGKP--------PLVYLLAGLQGAGKTTTAGKLAKFLQDKQNKKVML 134 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 + D +R AAI QL+ A + A FV S + +A A +A+ + D+LIIDTAGR Sbjct: 135 VSADIYRPAAIKQLEQVAAQVGASFVPSTTDENPIDIARRAIDEAKLQYQDILIIDTAGR 194 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 LH + +M+ I ++ + + P L V+D+ TGQ+A + F+ TG+I+T Sbjct: 195 LHIDDEMMSEIKELTKAVN------PVETLFVVDSMTGQDAANTAKAFNDALPLTGVILT 248 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 K DG ARGG + + P+ FLG GE + LE F + + I G D Sbjct: 249 KTDGDARGGAALSVRAITGKPIKFLGRGEKLEALELFHPERIAQRILGMGD 299 >gi|300867755|ref|ZP_07112400.1| signal recognition particle subunit FFH/SRP54 (srp54) [Oscillatoria sp. PCC 6506] gi|300334338|emb|CBN57572.1| signal recognition particle subunit FFH/SRP54 (srp54) [Oscillatoria sp. PCC 6506] Length = 483 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 90/292 (30%), Positives = 146/292 (50%), Gaps = 23/292 (7%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85 D IS + + +RE + L+ +D+ + V + + E+ K +V +++ Sbjct: 20 DKISDANIQEALRE-VRRALLEADVNLQVVKDFIAEVAVKAQGAEVISGVRPDQQFIKIV 78 Query: 86 YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 YD EL+ +++ + P S P ++L+ G+ G GKTT KL+ ++ +L Sbjct: 79 YD--ELV-RVMGETNSPLAIADSA-PTIVLMAGLQGTGKTTASAKLALQLRKQNRSTLLV 134 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIG--SDAAALAYEAFKQAQAKKVDVLIIDTAG 203 A D +R AAIDQL + D E+G +D +A + +A+ VD +I+DTAG Sbjct: 135 ATDIYRPAAIDQLITLGKQI--DVPVFELGKDTDPVEIARQGIDRARELGVDTVIVDTAG 192 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 RL + +MA + ++ ++ PH L V+DA TGQ A FH G TG I+ Sbjct: 193 RLQIDQDMMAELARIKETIQ------PHETLLVVDAMTGQEAANLTRTFHDQIGITGAIL 246 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TKMDG +RGG + + P+ F+GVGE + L+PF ++ I G D Sbjct: 247 TKMDGDSRGGAALSVRQISGAPIKFVGVGEKVEALQPFYPDRMASRILGMGD 298 >gi|5912315|emb|CAB56097.1| cell division protein [Rickettsia rickettsii] Length = 136 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 63/136 (46%), Positives = 93/136 (68%), Gaps = 2/136 (1%) Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237 A++AY +++ + +D+L IDTAGRLHN LM + K+++V+K+LD +AP HSVL V+ Sbjct: 2 ASVAYRGMEESIKQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVL-VI 60 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA TGQN QVE F+ TGLI+TK+DG+A+ G ++ +V +P+YF+G+GE I D Sbjct: 61 DAITGQNTYNQVEHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIED 120 Query: 298 LEPFVAKDFSAVITGC 313 L+ F DF+ I G Sbjct: 121 LKIFNQHDFARNIVGL 136 >gi|326559559|gb|EGE09973.1| signal recognition particle protein [Moraxella catarrhalis 7169] gi|326567759|gb|EGE17865.1| signal recognition particle protein [Moraxella catarrhalis BC1] Length = 514 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 95/291 (32%), Positives = 152/291 (52%), Gaps = 32/291 (10%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIV---------EELLTKRYAKDVSVQRVLYD-V 88 +D +++ L ++ L+ +D+ + VA+ V +E+L K A + +++YD + Sbjct: 24 EDNIKDTLREVRMALLEADVALPVARNFVARVKEQALGQEVL-KELAPGQAFVKIVYDEL 82 Query: 89 SELI---HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVML 144 +E++ ++ L KP P V L+ G+ G GKTT GKL+K + D KVML Sbjct: 83 TEMMGSANQTLEMTGKP--------PLVYLLAGLQGAGKTTTAGKLAKFLQDKQNKKVML 134 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 + D +R AAI QL+ A + A FV S + +A A +A+ + D+LIIDTAGR Sbjct: 135 VSADIYRPAAIKQLEQVAAQVGASFVPSTTDENPIDIARRAIDEAKLQYQDILIIDTAGR 194 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 LH + +M+ I ++ + + P L V+D+ TGQ+A + F+ TG+I+T Sbjct: 195 LHIDDEMMSEIKELTKAVN------PVETLFVVDSMTGQDAANTAKAFNDALPLTGVILT 248 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 K DG ARGG + + P+ FLG GE + LE F + + I G D Sbjct: 249 KTDGDARGGAALSVRAITGKPIKFLGRGEKLEALELFHPERIAQRILGMGD 299 >gi|237753415|ref|ZP_04583895.1| signal recognition particle protein [Helicobacter winghamensis ATCC BAA-430] gi|229375682|gb|EEO25773.1| signal recognition particle protein [Helicobacter winghamensis ATCC BAA-430] Length = 446 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 92/297 (30%), Positives = 153/297 (51%), Gaps = 23/297 (7%) Query: 30 EGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83 E + IS R D + +EL+ L++SD+ V ++++ E+ K + Sbjct: 7 ESFQNAISKIRFQDDEKALKRALDELKKALLKSDVHYKVLKELLAEVEKKTKLAGIGKDS 66 Query: 84 VLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140 L + E ++ +L + P N+ F P ++L+ G+ G GKTT KL+ + Sbjct: 67 FLNALKESLNTIL---TAPGNYGFIFAPKPPTIVLMAGLQGSGKTTTTAKLANYLKGKQK 123 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 KV+LAA D R AA++QL+ A + +F E G A +A EA K+A DVL++D Sbjct: 124 KVLLAACDLQRLAAVEQLRQLAAQVEVEFFHLE-GKSAVEIATEAKKKAIDGLYDVLLVD 182 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL + LM + + + P+ VL V+D+ +GQ+ ++ FH +G Sbjct: 183 TAGRLAIDEALMRELQSIKSAIN------PNEVLYVVDSLSGQDGVKSAATFHEKMDLSG 236 Query: 261 LIMTKMDGTARGGGLIPIVVTHK--IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ++++K DG ++GG I + + H+ IP+ F+GVGE I DLE F+ + + G D Sbjct: 237 VVLSKFDGDSKGG--IALSIAHQLGIPLRFIGVGEKIADLEVFIPERIVGRLMGAGD 291 >gi|304404220|ref|ZP_07385882.1| signal recognition particle protein [Paenibacillus curdlanolyticus YK9] gi|304347198|gb|EFM13030.1| signal recognition particle protein [Paenibacillus curdlanolyticus YK9] Length = 449 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 92/285 (32%), Positives = 146/285 (51%), Gaps = 21/285 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD---VSELIHKM 95 +D V E + ++ L+ +D+ V + V ++ K A + VQ+ V +++HK Sbjct: 13 EDDVNEAMREVRLALLEADVNFKVVKDFVAKV--KEQAVGIEVQKSFTPGMVVVDIVHKE 70 Query: 96 LMPL---SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 L+ L S S P VIL+ G+ G GKTT KL+K + K +L AGD +R Sbjct: 71 LIELMGGSATQIAKASKPPTVILMAGLQGAGKTTTTAKLAKMLMKNNHKPLLIAGDIYRP 130 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 AAI QL++ ++ A +G+D + +A + + A+A D +I+DTAGRL + Sbjct: 131 AAIKQLQVLGEQIGAQVFT--LGNDVSPVEIARQGLQHAKANSFDYVIVDTAGRLQIDEA 188 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM I ++ V++ P VL V+DA TGQ A+ + FH TG+++TK+DG Sbjct: 189 LMDEIKQIHAVVE------PDEVLLVVDAMTGQEAVNVAQSFHEQLELTGVVLTKLDGDT 242 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + + P+ F+ GE I LE F + ++ I G D Sbjct: 243 RGGAALSVKAVTGCPIKFVATGEKIEPLEAFHPERMASRILGMGD 287 >gi|269925893|ref|YP_003322516.1| signal recognition particle protein [Thermobaculum terrenum ATCC BAA-798] gi|269789553|gb|ACZ41694.1| signal recognition particle protein [Thermobaculum terrenum ATCC BAA-798] Length = 441 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 84/272 (30%), Positives = 137/272 (50%), Gaps = 20/272 (7%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKMLMPLSKPFNWD 106 L+ +D+ + VA++ + ++ K +S QR L ++ +++H+ L+ L Sbjct: 38 LMEADVNLKVAKQFINQIKEK-----ISEQRALESLTPAQQIIQVVHQELVSLLGSDQCK 92 Query: 107 F---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 S P + ++VG+ G GKTT KL+ + G + +L A D +R AAI QL+ Sbjct: 93 LETASTPPTIYMLVGLQGSGKTTTAAKLALYLRKQGARPLLVAADIYRPAAIKQLQTLGG 152 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + +A A A+ + +I+DTAGRLH + +MA +++RV Sbjct: 153 SLNIPVYSEGTSVPPENIATNAIDFAKQSSLTHVILDTAGRLHIDEAMMA---ELVRVR- 208 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 D +P +L V+DA TGQ A++ E FH G TG+IMTK+DG ARGG + I Sbjct: 209 --DKVSPTEILLVVDAMTGQEAVKVAEQFHNTLGVTGVIMTKLDGDARGGAALSIRAVTG 266 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P+ +G GE + EP + ++ I G D Sbjct: 267 VPIKMIGTGERPDAFEPLIPDRLASRILGLGD 298 >gi|55274300|gb|AAV49042.1| signal recognition particle GTPase [Azospirillum lipoferum] Length = 276 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/148 (50%), Positives = 102/148 (68%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W KL +G + +S KL +GIT I + R+LDD EELE+LLI +D+G A A K+ EL Sbjct: 106 WFAKLKEGLSKSSSKLTDGITSIFTKRKLDDEALEELEELLITADLGPATAAKVTAELAR 165 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 R+ K+VS + V ++ + K++ P+++P D + +PHVILVVGVNG GKTT IGKL+ Sbjct: 166 TRFGKEVSPEEVKSTLAAEVAKIVTPVARPLVLDPALKPHVILVVGVNGTGKTTTIGKLA 225 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 ++ G VMLAAGDTFR+AA+ QLKI Sbjct: 226 RQFKAEGKSVMLAAGDTFRAAAVSQLKI 253 >gi|298370390|ref|ZP_06981706.1| signal recognition particle protein [Neisseria sp. oral taxon 014 str. F0314] gi|298281850|gb|EFI23339.1| signal recognition particle protein [Neisseria sp. oral taxon 014 str. F0314] Length = 456 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 87/286 (30%), Positives = 152/286 (53%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D ++E L ++ L+ +D+ ++V ++ V + K ++V+ Q + V++ + Sbjct: 24 EDNIKEALREVRLALLEADVALSVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALI 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 +++ +K + + P V+L+ G+ G GKTT +GKL++ + ++ KV++ + D +R Sbjct: 84 ELMGKENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNEQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGIDFFPSNSNQKPVEIATAAIDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA GQ+A+ + F+ TG+I+TKMDG Sbjct: 203 NEIKAL---------HAAVNPVETLFVVDAMLGQDAVNTAQAFNEALPLTGVILTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GVGE I LEPF ++ I G D Sbjct: 254 SRGGAALSVRQITGKPIKFIGVGEKITGLEPFHPDRIASRILGMGD 299 >gi|325968148|ref|YP_004244340.1| GTP-binding signal recognition particle SRP54 G- domain [Vulcanisaeta moutnovskia 768-28] gi|323707351|gb|ADY00838.1| GTP-binding signal recognition particle SRP54 G- domain [Vulcanisaeta moutnovskia 768-28] Length = 446 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/274 (32%), Positives = 140/274 (51%), Gaps = 14/274 (5%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKD------VSVQRVLYDVSELIHKMLMPLSK 101 E++ +L+R+D+ V I + + +R+ ++ S + +LY + + + K L Sbjct: 34 EIQRILLRADVSADVVSSITK-TIEERFRQEKPPQGITSKEFLLYLLYQELVKALGGEEV 92 Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 P + + S RP+ ++++G+ G GKTT KL++ LKV L DT+R A QLK Sbjct: 93 P-SVNISKRPYKLMLIGIEGSGKTTTAAKLARFYIKRNLKVGLIETDTYRPGAYYQLKQL 151 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 A++ +A F E D A+ + Q KVD++IIDTAGR H N + K I Sbjct: 152 AEKVNALFYGEEDSKDPIAILRHGLEYMQRNKVDLIIIDTAGR-HRNEEELLKEAKAI-- 208 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 D P V+ V+DAT G+ A Q E F + +TKMD TA+ GG + V+ Sbjct: 209 ---YDEAKPDEVMLVIDATIGRQAAAQTEAFMKYVPIHSVFLTKMDSTAKAGGALTSVIR 265 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F+G+GE I+++E F A F + + G D Sbjct: 266 SGARIKFIGIGEDIDEVEIFDANKFVSRLLGMGD 299 >gi|269468630|gb|EEZ80274.1| signal recognition particle, subunit SRP54 [uncultured SUP05 cluster bacterium] Length = 474 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/195 (38%), Positives = 112/195 (57%), Gaps = 7/195 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V++V G+ G GKTT I KL++ + + KV++ + D +R AAI QL++ A + Sbjct: 97 TQPPAVVMVAGLQGAGKTTSIAKLARYLKERENKKVLVVSADVYRPAAIKQLEVLAGQVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S I + A K AQ + DVL++DTAGRLH + +M G++ + K+++ Sbjct: 157 VDFYPSTINDKPEKIVASAKKHAQKQFFDVLLVDTAGRLHVDEAMM---GEIKALQKKVN 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+D+ TGQ+A + F TG+I+TK DG ARGG + + P+ Sbjct: 214 PI---ETLFVVDSMTGQDAAHTAKAFADALPLTGVILTKTDGDARGGAALSVRHITGKPI 270 Query: 287 YFLGVGEGINDLEPF 301 FLGVGE I+ LEPF Sbjct: 271 KFLGVGEKIDALEPF 285 >gi|89091990|ref|ZP_01164945.1| signal recognition particle GTPase [Oceanospirillum sp. MED92] gi|89083725|gb|EAR62942.1| signal recognition particle GTPase [Oceanospirillum sp. MED92] Length = 470 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/305 (29%), Positives = 156/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + + +L +D ++ L ++ L+ +D+ + V ++ V + + Sbjct: 2 FENLSERLTQTLRSVTGQAKLTEDNIKGTLREVRMALLEADVALPVVKEFVNSVKERAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V+E + K++ ++ N + P V+++ G+ G GKTT + KL Sbjct: 62 TEVTKSLTPGQVFVKIVNEEMIKVMGEANEKLNLAATP-PAVVMMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 + + + KV++ + D +R AAI QL+ A DF S D +A A A+ Sbjct: 121 GRHLREREKKKVLVVSADVYRPAAIKQLETLAGEVEVDFFPSTADQDPVDIANAAIAHAR 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + DV+++DTAGRLH + +M I ++ + P L V+DA TGQ+A + Sbjct: 181 IQHHDVVLVDTAGRLHVDEDMMGEIKRLHEAVN------PIETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ V TG+++TK DG ARGG + + P+ FLGVGE ++ LEPF ++ I Sbjct: 235 AFNEVLPLTGVVLTKTDGDARGGAALSVRQITGKPIKFLGVGEKVDALEPFHPDRIASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|146297160|ref|YP_001180931.1| signal recognition particle protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410736|gb|ABP67740.1| signal recognition particle subunit FFH/SRP54 (srp54) [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 443 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 91/308 (29%), Positives = 155/308 (50%), Gaps = 24/308 (7%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F+S S KL++ + ++ + + D ++E ++ L+ +D+ V + + + K Sbjct: 2 FSSLSEKLQDVFKKLRGKGKLTEKDIKDAMKE-VKLALLEADVNYKVVKDFINTVTQKAV 60 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH---VILVVGVNGVGKTTV 127 ++V Q+V+ ++++ ++ L + + P + ++VG+ G GKTT Sbjct: 61 GEEVLESLTPAQQVI----KIVYDEMVNLLGGNDTKLTFSPSGFSIYMMVGLQGSGKTTT 116 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 GKL+ + G K +L A D +R AAI QL++ A++ DA +A E Sbjct: 117 AGKLAALLKKQGKKPLLIACDIYRPAAIKQLEVVAEKVGVSCYADYDKKDAVKIAVEGVN 176 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A++ + D+ I+DTAGRLH N LM + + +K P +L VLDA TGQ+A+ Sbjct: 177 FAKSNRFDIAIVDTAGRLHINEELMNELVAIKSAIK------PTEILLVLDAMTGQDAVN 230 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 E F+ G G+IMTK+DG RGG + + P+ F G+GE + DLE F + Sbjct: 231 VAEAFNNQLGIDGIIMTKLDGDTRGGAALSVKAITGKPIKFAGMGEKMEDLEVFYPDRMA 290 Query: 308 AVITGCLD 315 + I G D Sbjct: 291 SRILGMGD 298 >gi|260912750|ref|ZP_05919236.1| signal recognition particle protein [Pasteurella dagmatis ATCC 43325] gi|260633128|gb|EEX51293.1| signal recognition particle protein [Pasteurella dagmatis ATCC 43325] Length = 458 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 100/307 (32%), Positives = 160/307 (52%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + +I RL +D ++E L ++ L+ +D+ + V + + ++ K A Sbjct: 2 FENLSDRLSKTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFINKV--KERA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E + + L ++ N + P VIL+ G+ G GKTT +G Sbjct: 60 IGVEVNKSLTPGQEFVKIVQAELEVAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+K + + KV++ + D +R AAI QL+ A A F S++ + A+A A + Sbjct: 119 KLAKFLKERHKKKVLVVSADVYRPAAIKQLETLAQAVGASFFPSDVSQNPVAIAQAALAE 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DVLI+DTAGRLH + +M I ++ L P L +DA TGQ+A Sbjct: 179 AKLKFYDVLIVDTAGRLHVDGEMMDEIKQIHAALN------PIETLFTVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F+ TG+++TK+DG ARGG + I P+ FLGVGE + LEPF + ++ Sbjct: 233 AKAFNEALPLTGVVLTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPERVAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|238852592|ref|ZP_04643002.1| signal recognition particle protein [Lactobacillus gasseri 202-4] gi|238834738|gb|EEQ26965.1| signal recognition particle protein [Lactobacillus gasseri 202-4] Length = 476 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 94/306 (30%), Positives = 156/306 (50%), Gaps = 20/306 (6%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F + S +L++ + ++ IS ++D RE + L+ +D+ V + ++++ + Sbjct: 3 FENLSERLQKALKNLTGKGKISEADINDASRE-IRLALLEADVNFKVVKDFIKKIKKEAL 61 Query: 76 AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K+V Q+++ V + + KM+ + N H P +I++VG+ G GKTT +GK Sbjct: 62 GKEVQESLNPGQQIIKIVDDELTKMMGEEAVSLNKS-QHIPTIIMMVGLQGTGKTTTVGK 120 Query: 131 LSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L+ M + + +L AGD +R AAIDQLK + + V SE + A + ++A Sbjct: 121 LANYLMKNEKARPLLIAGDIYRPAAIDQLKQIGQQLNVP-VYSEDNQNVAEIVKHGLEEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 K D ++IDTAGRL + LM + ++ V P + L V+DA TGQ A + Sbjct: 180 DKNKNDYVLIDTAGRLEIDEQLMDELKRVTAVAH------PDNTLLVVDAMTGQAATQVA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F+ TG+I+TK+DG RGG + I +P+ F G GE + DL F ++ Sbjct: 234 EGFNNDLDLTGIILTKLDGDTRGGAALSIRAVTGLPIIFTGQGEKLTDLSTFHPDRMASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|320323179|gb|EFW79268.1| signal recognition particle protein [Pseudomonas syringae pv. glycinea str. B076] Length = 458 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 153/306 (50%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRLD-DGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I +L+ D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSQTLRHVIGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNV--KERA 59 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N D P VIL+ G+ G GKTT GK Sbjct: 60 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL+ A+ F S+I +A A K+A Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K +DV+I+DTAGRLH + +M I + K P L V+DA TGQ+A Sbjct: 180 RLKFIDVVIVDTAGRLHVDVEMMGEIQALHAATK------PAETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK+DG ARGG + + P+ F+G+GE LEPF ++ Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|296817061|ref|XP_002848867.1| signal recognition particle protein [Arthroderma otae CBS 113480] gi|238839320|gb|EEQ28982.1| signal recognition particle protein [Arthroderma otae CBS 113480] Length = 535 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 87/301 (28%), Positives = 150/301 (49%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ ++D+ S +D D + +E+ L+ +D+ V + Q++ + + + Sbjct: 9 RINAAVSDLTRSNTVDEKALDAMIKEICAALLSADVNVRLVQQLRKSIKAAVQLPSIPPA 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D +L+ ++ P ++PF + +VI++VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--QLV-ALVDPHAEPFKPK-KGKSNVIMMVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G K L DTFR+ A DQLK A + + S +D ++ E + + ++ Sbjct: 125 YQTKGFKAALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPVIVSSEGVAKFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D++I+DT+GR L A + ++ +K P + VLD+T GQ A Q F + Sbjct: 185 DIIIVDTSGRHRQEEDLFAEMTQIQAAIK------PDQTIMVLDSTIGQAAESQSAAFKS 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V + P+ FLG GE + DLE F + F + G Sbjct: 239 AADFGAIIITKTDGHAAGGGAISAVAATRTPIIFLGTGEHMLDLERFAPQPFIQKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|20095048|ref|NP_614895.1| Signal recognition particle GTPase [Methanopyrus kandleri AV19] gi|23822175|sp|Q8TUY9|SRP54_METKA RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|19888324|gb|AAM02825.1| Signal recognition particle GTPase [Methanopyrus kandleri AV19] Length = 447 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 80/236 (33%), Positives = 127/236 (53%), Gaps = 10/236 (4%) Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 R++Y+ EL+ + ++ + D S +VI++VG+ G+GKTT KL++ + G +V Sbjct: 75 RIVYE--ELVELLGGEKTEGLDIDLSRDVNVIMLVGLYGMGKTTTAAKLARYLQRKGYRV 132 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 L D +R AA +QL+ A+ ++ DA +A + +A + DV+I+DTA Sbjct: 133 GLVGADPYRPAAGEQLRQLAEEVDVPVHVEDV-DDAVEMAVKGV-EALKDECDVVIVDTA 190 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GR + L+ + +M ++ PH VL VLDAT GQ A E FH TG++ Sbjct: 191 GRDRLSEDLIDELREMAERIE------PHEVLLVLDATVGQKAGDHAEAFHEAVQLTGVV 244 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 +TK+D A+GGG + V P+ F+G GE ++DLE F + F A + G D E Sbjct: 245 ITKLDTAAKGGGALSAVARTGAPIKFVGTGERVDDLEEFNPRSFVARLLGIGDIDE 300 >gi|5912331|emb|CAB56072.1| cell division protein [Rickettsia helvetica] Length = 136 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 62/136 (45%), Positives = 93/136 (68%), Gaps = 2/136 (1%) Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237 A++AY A +++ + +D+L IDTAGRLHN LM + K+++V+K+LD +AP HSVL ++ Sbjct: 2 ASVAYRAMEESIKQNIDILFIDTAGRLHNKKNLMDELAKIVKVIKKLDENAPTHSVL-II 60 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA TGQN QVE F+ TGLI+TK+DG+A+ G ++ +V +PVYF+ +GE I D Sbjct: 61 DAITGQNTYNQVEHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPVYFISIGEKIED 120 Query: 298 LEPFVAKDFSAVITGC 313 L+ F DF+ + G Sbjct: 121 LKIFNRHDFAKSLVGL 136 >gi|302306335|ref|NP_982582.2| AAR041Wp [Ashbya gossypii ATCC 10895] gi|299788468|gb|AAS50406.2| AAR041Wp [Ashbya gossypii ATCC 10895] Length = 514 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 111/206 (53%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +V++ VG+ G GKTT KL+ S G KV L DTFR+ A DQLK A + F Sbjct: 104 KSNVVMFVGLQGAGKTTSCTKLAVYYSKRGFKVGLVCADTFRAGAFDQLKQNAIKAKIPF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S ++ +A + + + ++ +++I+DT+GR H L +M+ + + + P+ Sbjct: 164 YGSYTETNPVRVAADGVAKFKKERFEIIIVDTSGRHHQEDALFQ---EMVEIAQEVKPN- 219 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 + VLDA+ GQ A +Q F A +I+TKMDG A+GGG I V K PV F+ Sbjct: 220 --QTIMVLDASIGQAAEQQSRAFKEAADFGAIILTKMDGHAKGGGAISAVAATKTPVIFI 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE ++D E F K F + + G D Sbjct: 278 GTGEHVHDFEKFSPKSFVSKLLGIGD 303 >gi|121729492|ref|ZP_01682099.1| signal recognition particle protein [Vibrio cholerae V52] gi|121628611|gb|EAX61088.1| signal recognition particle protein [Vibrio cholerae V52] Length = 404 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 99/307 (32%), Positives = 154/307 (50%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E I + L ++ N + P VIL+ G+ G GKTT +G Sbjct: 60 VGVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KLSK + + K V++ + D +R AAI QL+ A+ DF S +A A Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DVLI+DTAGRL + +MA I + + + P L V+DA TGQ+A Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+I+TK+DG ARGG + + P+ F+GVGE + LEPF ++ Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFXPDRIAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|323493645|ref|ZP_08098766.1| signal recognition particle protein [Vibrio brasiliensis LMG 20546] gi|323312168|gb|EGA65311.1| signal recognition particle protein [Vibrio brasiliensis LMG 20546] Length = 462 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 99/307 (32%), Positives = 154/307 (50%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D ++E L ++ L+ +D+ + V + ++ + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVRDFIKRV--KEAA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E I + L ++ N + P VIL+ G+ G GKTT +G Sbjct: 60 VGVEVSKSLTPGQEFIKIVQNELEGVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KLSK +++ K V++ + D +R AAI QL+ A DF S +A A Sbjct: 119 KLSKLLTERDKKKVLVVSADVYRPAAIKQLETLATDVGVDFFPSSADQKPIDIANAAIDH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DVL++DTAGRL + +MA I + + P L V+DA TGQ+A Sbjct: 179 AKKKFYDVLVVDTAGRLAVDEQMMAEIQDLHSAIN------PVETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+I+TK+DG ARGG + + P+ FLGVGE + LEPF ++ Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|294783942|ref|ZP_06749264.1| signal recognition particle protein [Fusobacterium sp. 1_1_41FAA] gi|294479754|gb|EFG27533.1| signal recognition particle protein [Fusobacterium sp. 1_1_41FAA] Length = 444 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 108/207 (52%), Gaps = 6/207 (2%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P +I++ G+ G GKTT KL+K + K++L D +R AAI QL++ + D Sbjct: 98 RNPTIIMLAGLQGAGKTTFAAKLAKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVD 157 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 E D +A A ++A+ +I+DTAGRLH + LM + ++ R +K Sbjct: 158 VYSEEDNKDVVGIATRAIEKAKEINATYMIVDTAGRLHVDETLMNELKELKRAIK----- 212 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P +L V+DA GQ+A+ E F+ G+I+TK+DG RGG + I P+ F Sbjct: 213 -PQEILLVVDAMIGQDAVNLAESFNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKF 271 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +GVGE +ND+E F + I G D Sbjct: 272 IGVGEKLNDIEIFHPDRLVSRILGMGD 298 >gi|302896050|ref|XP_003046905.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256727833|gb|EEU41192.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 518 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/297 (29%), Positives = 144/297 (48%), Gaps = 18/297 (6%) Query: 27 KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS------ 80 ++ + ++ + LD+ E+ L+ +D+ V + ++ + + T K++ Sbjct: 9 RINAAVNNLTREQNLDEKAGPEICAALLEADVNVRLVGQLRKSIRTTVNFKELPPAVNKK 68 Query: 81 --VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138 +Q+ ++D EL+ K++ P + F + VI+ VG+ G GKTT KL++ Sbjct: 69 RLIQKAVFD--ELV-KLVDPHADSFRPK-KGKSSVIMFVGLQGAGKTTTCTKLARHYQSR 124 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 G K L DTFR+ A DQLK A + + S +D A +A +Q + + +V+I Sbjct: 125 GFKSCLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAVVARAGVEQFKKDRFEVII 184 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +DT+GR S L +MI + + P + VLDA+ GQ A Q + F A Sbjct: 185 VDTSGRHRQESALFQ---EMIDIQNAIQ---PDETIMVLDASIGQQAESQAKAFKEAADF 238 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK DG A GGG I V P+ F+G GE + DLE F + F + G D Sbjct: 239 GAIIITKTDGHAHGGGAISAVAATHTPIVFIGTGEHMLDLEKFAPQQFVQKLLGMGD 295 >gi|254510575|ref|ZP_05122642.1| signal recognition particle protein [Rhodobacteraceae bacterium KLH11] gi|221534286|gb|EEE37274.1| signal recognition particle protein [Rhodobacteraceae bacterium KLH11] Length = 500 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 140/269 (52%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA++ V+++ + + V+ Q+V+ V + + L P Sbjct: 38 LLEADVSLPVAREFVKKVQEQATGQAVTKSITPGQQVVKIVHDALVDTLRGEEDPGALKI 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P IL+VG+ G GKTT GKL+K++ + G KV++A+ D +R AA+DQL + + Sbjct: 98 DNPPAPILMVGLQGSGKTTTTGKLAKRLKEKEGKKVLMASLDVYRPAAMDQLAVLGTQVG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G +A A +QA DV ++DTAGRLH + +LM + ++ + Sbjct: 158 VDTLPIVPGQSPVDIAKRAKQQATLGGYDVYMLDTAGRLHIDEVLMDEVEQVRNAVD--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+D TGQ A+ E F A G +G+++T+MDG RGG + + P+ Sbjct: 215 ---PRETLLVVDGLTGQVAVEVAEEFDAKVGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ LE F + I G D Sbjct: 272 RFVGLGEKMDALETFEPDRIAGRILGMGD 300 >gi|119357327|ref|YP_911971.1| signal recognition particle subunit FFH/SRP54 (srp54) [Chlorobium phaeobacteroides DSM 266] gi|119354676|gb|ABL65547.1| signal recognition particle subunit FFH/SRP54 (srp54) [Chlorobium phaeobacteroides DSM 266] Length = 449 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 84/268 (31%), Positives = 137/268 (51%), Gaps = 12/268 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ VA+K+V+++ K + V Q ++ V++ + ++ +P N Sbjct: 38 LLNADVNYKVAKKLVDDIREKSLGEQVLKSVSPAQMIVKIVNDELTDLMGGEHQPLNLSP 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 P +I+V G+ G GKTT KL+K++ G ML A D +R AA+DQL+ ++ Sbjct: 98 KKLPAIIMVAGLQGSGKTTFCAKLAKRLKKNGKNPMLVAADVYRPAAVDQLRTLGEQVDV 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V S DA A + + A+ DV+IIDTAGRL + +MA + LK Sbjct: 158 P-VFSIDEQDAMKAAVKGLEAARLAAKDVVIIDTAGRLQIDEKMMAEAEALKHALK---- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ GQ A+ + F+ G+++TK+DG ARGG + I + P+ Sbjct: 213 --PDELLFVVDSMMGQEAVNTAKAFNDRLDFDGVVLTKLDGDARGGAALSIRQVVEKPIK 270 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ VGE ++DL+ F + I G D Sbjct: 271 FISVGEKVDDLDLFYPDRMAQRILGMGD 298 >gi|312883945|ref|ZP_07743662.1| signal recognition particle protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309368403|gb|EFP95938.1| signal recognition particle protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 459 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 97/316 (30%), Positives = 157/316 (49%), Gaps = 39/316 (12%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL ++ ++E L ++ L+ +D+ + V + ++ + K Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEENIKETLREVRMALLEADVALPVVRDFIKRIKEKAVG 61 Query: 77 KDVS----------------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 +VS ++ V+ D +E+++ P P VIL+ G+ Sbjct: 62 VEVSKSLTPGQEFIKIVQSELESVMGDTNEVLNLAAQP------------PAVILMAGLQ 109 Query: 121 GVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 G GKTT +GKLSK +S+ KV++ + D +R AAI QL+ A DF S Sbjct: 110 GAGKTTSVGKLSKLLSEREKKKVLVVSADVYRPAAIKQLETLAADVGVDFFPSTAEQKPI 169 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 +A A A+ K DVL++DTAGRL + +MA I ++ + P L V+DA Sbjct: 170 DIANAAIDHAKRKFYDVLLVDTAGRLAIDEQMMAEIQELHTAIN------PVETLFVVDA 223 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQ+A + F TG+I+TK+DG ARGG + + P+ FLGVGE + LE Sbjct: 224 MTGQDAANTAKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALE 283 Query: 300 PFVAKDFSAVITGCLD 315 PF + ++ I G D Sbjct: 284 PFHPERVASRILGMGD 299 >gi|262172355|ref|ZP_06040033.1| signal recognition particle subunit Ffh SRP54 [Vibrio mimicus MB-451] gi|261893431|gb|EEY39417.1| signal recognition particle subunit Ffh SRP54 [Vibrio mimicus MB-451] Length = 461 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 100/307 (32%), Positives = 154/307 (50%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E I + L ++ N + P VIL+ G+ G GKTT +G Sbjct: 60 VGVEVSKSLTPGQEFIKIVRQQLETVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KLSK + + K V++ + D +R AAI QL+ A+ DF S +A A Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DVLI+DTAGRL + +MA I + + + P L V+DA TGQ+A Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEQMMAEIQALHKAI------TPVETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+I+TK+DG ARGG + + P+ FLGVGE + LEPF ++ Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRIAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|255994441|ref|ZP_05427576.1| signal recognition particle protein [Eubacterium saphenum ATCC 49989] gi|255993154|gb|EEU03243.1| signal recognition particle protein [Eubacterium saphenum ATCC 49989] Length = 442 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 97/302 (32%), Positives = 160/302 (52%), Gaps = 23/302 (7%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A ESLS K+ + F+ KLK T +S + +D +RE ++ L+ +D+ + ++ Sbjct: 1 MAFESLS--EKMQRAFS----KLKGKGT--LSEKDIDVAMRE-IKLALLEADVSYKIVKE 51 Query: 66 IVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGV 119 V ++ K +V Q+V+ V+ + +++ +S FS + I ++VG+ Sbjct: 52 FVNDVKEKSLGSEVMKSLTPDQQVIKFVNTELRELMGDVSSKLT--FSPKGFTIYMMVGL 109 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 G GKTT KL+K + + G K MLAA D +R AAIDQL++ + S Sbjct: 110 QGTGKTTTCAKLAKYLKEQGKKPMLAACDVYRPAAIDQLEVVGKDVGVEVYADREESSPV 169 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 +A A ++A+ ++VLI+DTAGRL + LM + + + + H PH +L V+DA Sbjct: 170 KIAKAAIEKAERLGMNVLILDTAGRLQIDEELMDELADI-----KSEVH-PHEILLVVDA 223 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQ+A+ FH G G+IMTK+DG ARGG + + + F+G+GE ++ E Sbjct: 224 LTGQDAVNTASGFHDKLGVDGVIMTKLDGDARGGAALSVKKVTGTAIKFVGLGEKFDEFE 283 Query: 300 PF 301 F Sbjct: 284 VF 285 >gi|320354484|ref|YP_004195823.1| signal recognition particle subunit FFH/SRP54 (srp54) [Desulfobulbus propionicus DSM 2032] gi|320122986|gb|ADW18532.1| signal recognition particle subunit FFH/SRP54 (srp54) [Desulfobulbus propionicus DSM 2032] Length = 449 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 153/303 (50%), Gaps = 24/303 (7%) Query: 30 EGITDIISS---------RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77 E +TD + S R ++ ++E E+ L+ +D+ V ++ + + K + Sbjct: 3 ENLTDRLESTFKKLRGHGRLTEENIQEAMGEVRTALLEADVNFGVVKEFIASVTEKAIGR 62 Query: 78 DVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 +V Q+V+ V + + ++L ++P D +P VI++ G+ G GKTT KL+ Sbjct: 63 EVLTSLSPGQQVVKVVHDELVELLGSQAEPLKLD-GRQPVVIMLAGLQGSGKTTTAAKLA 121 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 K++ + G L D +R AAI+QL + ++ S +A +A +A+ Sbjct: 122 KQLKEKGRAPFLVPADVYRPAAIEQLHVLGEQVGVPVYASTTEQKPVDIARQAVAEARTG 181 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 D +IIDTAGRLH + LMA + ++ R + P A VL V DA TGQ+A+ + F Sbjct: 182 HYDTVIIDTAGRLHVDEALMAELQEISRTV----PLA--EVLFVADAMTGQDAVTVADKF 235 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + TG+++TKM+G ARGG + + P+ F+GVGE + LE F ++ I G Sbjct: 236 NTDLEITGVVLTKMEGDARGGAALSVKKVTGKPIKFVGVGESVEALEVFHPDRAASRILG 295 Query: 313 CLD 315 D Sbjct: 296 MGD 298 >gi|255716822|ref|XP_002554692.1| KLTH0F11374p [Lachancea thermotolerans] gi|238936075|emb|CAR24255.1| KLTH0F11374p [Lachancea thermotolerans] Length = 534 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/235 (34%), Positives = 127/235 (54%), Gaps = 10/235 (4%) Query: 81 VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140 +Q+ ++D EL + ++ ++PF + +VI+ VG+ G GKTT KL+ S G Sbjct: 78 IQKTVFD--ELCN-LVDGETEPFQPK-KRKQNVIMFVGLQGSGKTTSCTKLAVYYSKRGF 133 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 KV L DTFR+ A DQLK A + F S ++ +A E + + +K +V+I+D Sbjct: 134 KVGLVCADTFRAGAFDQLKQNAIKARIPFYGSYTETNPVKVAAEGVAKFKKEKFEVIIVD 193 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 T+GR L + ++ +V+K P+ + VLDA+ GQ A +Q + F + Sbjct: 194 TSGRHRQEEELFQEMVEISQVVK------PNQTIMVLDASIGQAAEQQSKAFKDSSDFGA 247 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TKMDG A+GGG I V K P+ F+G GE ++D E F K F + + G D Sbjct: 248 IILTKMDGHAKGGGAISAVAATKTPIIFIGTGEHVHDFEKFSPKSFISKLLGIGD 302 >gi|182414651|ref|YP_001819717.1| signal recognition particle protein [Opitutus terrae PB90-1] gi|177841865|gb|ACB76117.1| signal recognition particle protein [Opitutus terrae PB90-1] Length = 447 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 100/310 (32%), Positives = 150/310 (48%), Gaps = 30/310 (9%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL---- 71 F S + KL + + ++ +S + + ++E + L+ +D+ VA++ VE + Sbjct: 2 FESLTEKLGQALRNLRGVGTLSEENMAEALKE-VRSALLSADVHFKVAREFVERVQQQAV 60 Query: 72 ----TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 TK A V ++++D + L+ + LS RP +L+VG++G GKTT Sbjct: 61 GQQVTKGIAPGQQVIKIIHDELVRLLGEGTTALS-------GERPLKVLMVGLHGSGKTT 113 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL K + G + + A D +R AAIDQL+I A + F + D A+ A Sbjct: 114 STAKLGKLLKKRGYRPFVVACDVYRPAAIDQLEILAKQEELGFYADRVSKDVPAIGSAAL 173 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH-APHSVLQVLDATTGQNA 245 +AQA D +I DTAGRL + L I +KRL P VL V D GQ A Sbjct: 174 AEAQAATADCIIFDTAGRLQIDQDL-------IEEVKRLRARVQPDEVLLVADGALGQEA 226 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + + FH TGL++TKMDG ARGG + I +P+ F+G GE D EPF Sbjct: 227 VNVAKAFHDALQLTGLVLTKMDGDARGGAALSIKTITGVPIKFVGTGEKTADFEPFHPDR 286 Query: 306 FSAVITGCLD 315 ++ I G D Sbjct: 287 LASRILGMGD 296 >gi|5912323|emb|CAB56078.1| cell division protein [Rickettsia montanensis] Length = 136 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 62/136 (45%), Positives = 93/136 (68%), Gaps = 2/136 (1%) Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237 A++AY +++ + +D+L IDTAGRLHN LM + K+++V+K+LD +AP HSVL V+ Sbjct: 2 ASVAYRGMEESMKQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVL-VI 60 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA TGQN QVE F+ TGLI+TK+DG+A+ G ++ +V +P+YF+G+GE I D Sbjct: 61 DAITGQNTYNQVEHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIED 120 Query: 298 LEPFVAKDFSAVITGC 313 L+ F DF+ + G Sbjct: 121 LKIFNRHDFARNLVGL 136 >gi|294786046|ref|ZP_06751331.1| signal recognition particle protein [Fusobacterium sp. 3_1_27] gi|294486268|gb|EFG33633.1| signal recognition particle protein [Fusobacterium sp. 3_1_27] Length = 444 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 87/285 (30%), Positives = 144/285 (50%), Gaps = 13/285 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQ----KIVEELLTKRYAKDVS-VQRVLYDVSE 90 +S + D +RE ++ L+ +D+ V + KI E+ + K V+ Q+ + V++ Sbjct: 22 LSESNIKDALRE-VKMSLLEADVNYKVVKDFTNKISEKAIGTEVIKGVNPAQQFIKLVND 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + ++L S + P +I++ G+ G GKTT KL+K + K++L D + Sbjct: 81 ELVELLGGTSSKLTKGLRN-PTIIMLAGLQGAGKTTFAAKLAKFLKKQNEKLLLVGVDVY 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAI QL++ + D E D +A A ++A+ +I+DTAGRLH + Sbjct: 140 RPAAIKQLQVLGQQIGVDVYSEEDTKDVVGIATRAIEKAKEINATYMIVDTAGRLHIDET 199 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + ++ R +K P +L V+DA GQ+A+ E F+ G+I+TK+DG Sbjct: 200 LMEELKELKRAIK------PQEILLVVDAMIGQDAVNLAESFNNALSVDGVILTKLDGDT 253 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I P+ F+GVGE +ND+E F + I G D Sbjct: 254 RGGAALSIKAVVGKPIKFIGVGEKLNDIEIFHPDRLVSRILGMGD 298 >gi|78042676|ref|YP_360266.1| signal recognition particle protein [Carboxydothermus hydrogenoformans Z-2901] gi|77994791|gb|ABB13690.1| signal recognition particle protein [Carboxydothermus hydrogenoformans Z-2901] Length = 446 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 155/305 (50%), Gaps = 19/305 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S KL+E + RL ++ V L ++ L+ +D+ V + + ++ K Sbjct: 3 FENLSNKLQEVFKKLKGKGRLTEEDVNLALREVRIALLEADVNFQVVKDFIAKVKEKAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V Q+V+ V E + ++ + N D P +I++VG+ G GKTT KL Sbjct: 63 HEVLESLTPGQQVIKIVHEELINLMGKTNAKLN-DAGSPPTIIMLVGLQGAGKTTTAAKL 121 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA-LAYEAFKQAQ 190 + + G K +L A D +R AAI QL++ D + D +G + +A + A+ Sbjct: 122 AYLLKKQGKKPLLVAADVYRPAAIKQLQVLGD--TIDVPVFTMGEQSPVDIAKASINFAK 179 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + + +IIDTAGRLH N LM + K+ V+ PH +L V+DA TGQ+A+ + Sbjct: 180 SNLKNYVIIDTAGRLHINEELMDELKKIKDVVH------PHEILLVVDAMTGQDAVNVAK 233 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ G TG+I+TK+DG +GG + + P+ F G+GE I +LEPF ++ I Sbjct: 234 SFNDELGLTGVILTKLDGDTKGGAALSVKAVTGCPIKFAGMGEKIENLEPFYPDRMASRI 293 Query: 311 TGCLD 315 G D Sbjct: 294 LGMGD 298 >gi|193084148|gb|ACF09814.1| signal recognition particle subunit Ffh SRP54 [uncultured marine group III euryarchaeote SAT1000-53-B3] Length = 444 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/205 (36%), Positives = 111/205 (54%), Gaps = 8/205 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P I++VG+ G GKTT GKL K GL + L A D R AA DQL ++ Sbjct: 97 PQKIMLVGLYGQGKTTTTGKLGKHFKKKGLNLGLIAADVHRPAAFDQLSQIGEQVQVPVF 156 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 S DA + E ++ K++DV+I+DTAGR + L++ + + +++K P Sbjct: 157 GSSDNKDAGKVVKEGLEEF--KELDVVIVDTAGRHALDEELISEMKSISKIVK------P 208 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 +L V+DAT GQ A Q + FH G +G+I+TK+DG+A+GGG + V K P+ F+G Sbjct: 209 DEILLVMDATVGQQAGPQAQAFHDAVGVSGVILTKLDGSAKGGGALSAVAVTKAPIVFVG 268 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 GE ++ LE F + + G D Sbjct: 269 TGESLDSLETLDPDRFISRLLGMGD 293 >gi|315038606|ref|YP_004032174.1| signal recognition particle protein [Lactobacillus amylovorus GRL 1112] gi|312276739|gb|ADQ59379.1| signal recognition particle protein [Lactobacillus amylovorus GRL 1112] gi|327183810|gb|AEA32257.1| signal recognition particle protein [Lactobacillus amylovorus GRL 1118] Length = 476 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 138/269 (51%), Gaps = 13/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + ++ + + K+V Q+V+ V+E + KM+ + P N Sbjct: 39 LLEADVNFKVVKDFIKTIKKEALGKEVQESLNPGQQVIKIVNEQLTKMMGEEAVPLNKS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 H P +I++VG+ G GKTT +GKL+ + + +L AGD +R AA+DQLK ++ Sbjct: 98 KHIPTIIMMVGLQGTGKTTTVGKLAYHLQKTEKARPLLIAGDIYRPAAVDQLKQIGEQLK 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + D A + + +A+ K D ++IDTAGRL + LM + ++ +V Sbjct: 158 VPVYSEDGEKDVAKIVQDGLAEAEKNKNDYVLIDTAGRLEIDEPLMEELERVKKVAN--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P ++L V+DA TGQ A + F TG+I+TK+DG RGG + I P+ Sbjct: 215 ---PDNILLVVDAMTGQAATDVAKGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE ++DL+ F ++ I G D Sbjct: 272 LFTGQGEKLSDLDVFHPDRMASRILGMGD 300 >gi|310800676|gb|EFQ35569.1| signal recognition particle protein SRP54 [Glomerella graminicola M1.001] Length = 526 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/304 (28%), Positives = 149/304 (49%), Gaps = 28/304 (9%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-- 80 ++ ++++ LD DG+ +E+ L+ +D+ V + ++ + + + K++ Sbjct: 9 RINTAVSNLTREPNLDEKAFDGMLKEICAALLEADVNVRLVGQLRKSIKSTVNFKELPPA 68 Query: 81 ------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 +Q+ ++D EL+ K++ P ++PF + ++++ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--ELV-KLVDPHAEPFKPK-KGKSNIVMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G K L DTFR+ A DQLK A + + S +D A +A E + + +K Sbjct: 125 YQARGFKACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAVVAKEGVDKFKKEKF 184 Query: 195 DVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +++I+DT+GR L M I IR P + VLDA+ GQ A Q + Sbjct: 185 EIIIVDTSGRHRQEEALFQEMVDIQTAIR---------PDETIMVLDASIGQQAESQAKA 235 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F A +I+TK DG A GGG I V P+ F+G GE + D E F + F + + Sbjct: 236 FKEAADFGAIIITKTDGHASGGGAISAVAATHTPIVFIGTGEHMLDFERFAPQQFVSKLL 295 Query: 312 GCLD 315 G D Sbjct: 296 GMGD 299 >gi|238503263|ref|XP_002382865.1| signal recognition particle protein SRP54 [Aspergillus flavus NRRL3357] gi|220691675|gb|EED48023.1| signal recognition particle protein SRP54 [Aspergillus flavus NRRL3357] Length = 527 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 144/301 (47%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ + D+ S LD D + +E+ L+ +D+ V + Q + + + L Sbjct: 9 RINAAVNDLTRSNNLDEKAFDDMLKEICAALLSADVNVRLVQSLRKSIKSSVNFASLPPA 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D EL+ ++ P + PF R +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--ELV-ALVNPHADPFRPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G K L DTFR+ A DQLK A + + S +D A +A E + + ++ Sbjct: 125 YQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAAEGVAKFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 +++I+DT+GR L + ++ + P + VLD+T GQ A Q F A Sbjct: 185 EIIIVDTSGRHKQEEELFTEMTQIQTAV------TPDQTILVLDSTIGQAAEAQSAAFKA 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V P+ FLG GE + DLE F K F + G Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMMDLERFEPKAFIQKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|327401116|ref|YP_004341955.1| Signal recognition 54 kDa protein [Archaeoglobus veneficus SNP6] gi|327316624|gb|AEA47240.1| Signal recognition 54 kDa protein [Archaeoglobus veneficus SNP6] Length = 436 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 99/300 (33%), Positives = 148/300 (49%), Gaps = 28/300 (9%) Query: 28 LKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV---- 79 LK+ + I S +D + EE ++ L+++D+ V ++I + + + ++DV Sbjct: 6 LKDIVKKIARSTTVDKALVEEVVRDIQRALLKADVNVRQVKEISDAIKKRALSEDVLPTF 65 Query: 80 ----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 + R++Y+ EL+ + L P + I++VG+ G GKTT KL+K Sbjct: 66 NVREHIIRIVYE--ELMRGIGEGLEIPL------KKAKIMLVGLQGSGKTTTAAKLAKYF 117 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 D G+K + A DT+R AA +QLK A+ F + DA +A K K D Sbjct: 118 KDKGMKTGVIAADTWRPAAYEQLKQLAESYGIGFYGEKENKDAVEIARNGLKAL--KDYD 175 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 ++IIDTAGR L I +MI + K P L VLDA GQ A RQ + FH Sbjct: 176 MIIIDTAGRHALEEEL---IDEMIEIAKATQPDYK---LLVLDAAIGQLASRQAKAFHDA 229 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G G+I+TK DGTA+GGG + IP+ F+G GE + D E F F + + G D Sbjct: 230 IGINGIIITKFDGTAKGGGALSAAREIGIPIAFIGTGEKVEDFERFDPAGFVSRLLGMGD 289 >gi|254525556|ref|ZP_05137608.1| signal recognition particle protein [Prochlorococcus marinus str. MIT 9202] gi|221536980|gb|EEE39433.1| signal recognition particle protein [Prochlorococcus marinus str. MIT 9202] Length = 486 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 87/286 (30%), Positives = 148/286 (51%), Gaps = 14/286 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 IS ++D + + ++ L+ +D+ ++V + + E+ K ++V Q+ + V++ Sbjct: 22 ISENNINDALNQ-VKRALLDADVSLSVVKDFISEVKEKAIGEEVVRGVNPGQKFIEVVNK 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + ++ + P N + + P VIL+ G+ G GKTT GKL + KV+L A D + Sbjct: 81 ELINIMGNENSPLNEN-ENSPTVILMAGLQGAGKTTATGKLGLYLKAKDKKVLLVAADIY 139 Query: 151 RSAAIDQLKIWADRTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 R AA++QLK + + F E +A +A A+ + +IIDTAGRL + Sbjct: 140 RPAAVEQLKTLGSQYDLEVFSAKEKNCKPEVIAKDALNFARENDFNSIIIDTAGRLQIDD 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 +M+ +M+R+ + P VL V+D+ GQ A + FH G +G I+TK+DG Sbjct: 200 SMMS---EMVRIK---EVSNPDEVLLVVDSMIGQEAADLTKSFHEKVGISGAILTKLDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + I P+ F+GVGE I L+PF + ++ I G D Sbjct: 254 SRGGAALSIRKISGKPIKFIGVGEKIEALQPFHPERMASRILGMGD 299 >gi|325957087|ref|YP_004292499.1| signal recognition particle protein [Lactobacillus acidophilus 30SC] gi|325333652|gb|ADZ07560.1| signal recognition particle protein [Lactobacillus acidophilus 30SC] Length = 476 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 138/269 (51%), Gaps = 13/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + ++ + + K+V Q+V+ V+E + KM+ + P N Sbjct: 39 LLEADVNFKVVKDFIKTIKKEALGKEVQESLNPGQQVIKIVNEQLTKMMGEEAVPLNKS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 H P +I++VG+ G GKTT +GKL+ + + +L AGD +R AA+DQLK ++ Sbjct: 98 KHIPTIIMMVGLQGTGKTTTVGKLAYHLQKTEKARPLLIAGDIYRPAAVDQLKQIGEQLK 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + D A + + +A+ K D ++IDTAGRL + LM + ++ +V Sbjct: 158 VPVYSEDGEKDVAKIVQDGLAEAEKNKNDYVLIDTAGRLEIDEPLMEELERVKKVAN--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P ++L V+DA TGQ A + F TG+I+TK+DG RGG + I P+ Sbjct: 215 ---PDNILLVVDAMTGQAATDVAKGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE ++DL+ F ++ I G D Sbjct: 272 LFTGQGEKLSDLDVFHPDRMASRILGMGD 300 >gi|312143704|ref|YP_003995150.1| signal recognition particle protein [Halanaerobium sp. 'sapolanicus'] gi|311904355|gb|ADQ14796.1| signal recognition particle protein [Halanaerobium sp. 'sapolanicus'] Length = 445 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/274 (30%), Positives = 138/274 (50%), Gaps = 12/274 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSK 101 +E++ L+ +D+ V ++ V ++ + K+V Q+V+ V+E + ++ + Sbjct: 33 KEVKMALLEADVNYKVVKRFVNKIEERAVGKEVMDSLTPAQQVIKIVNEEMQNLMGGSQE 92 Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 N P +I++VG+ G GKTT GKL++ +S+ G +L A D +R AAI QL++ Sbjct: 93 EINIS-PDPPTIIMMVGLQGSGKTTSAGKLARMLSNKGKNPLLVAADVYRPAAIRQLQVL 151 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 +R SD +A + A D +I+DTAGRLH + +M + + Sbjct: 152 GERLDLPVFSMGEDSDPVDIAKGSINFASTHNCDTIILDTAGRLHIDQEMMEELEGIKGA 211 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 + P +L V+DA TGQ+A+ + F G+++TKMDG ARGG + I Sbjct: 212 VD------PDEILLVVDAMTGQDAVNVAQNFDKRLDIDGILLTKMDGDARGGAALSIKEI 265 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F G GE + DLEPF ++ I G D Sbjct: 266 TGKPIKFAGTGEKLADLEPFHPDRMASRILGMGD 299 >gi|119498779|ref|XP_001266147.1| signal recognition particle protein SRP54 [Neosartorya fischeri NRRL 181] gi|119414311|gb|EAW24250.1| signal recognition particle protein SRP54 [Neosartorya fischeri NRRL 181] Length = 522 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 93/301 (30%), Positives = 145/301 (48%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ + D+ S LD D + +E+ L+ +D+ V + Q + + + L Sbjct: 9 RINAAVNDLTRSSNLDEKAFDDMLKEICAALLSADVNVRLVQTLRKSIKSSVSFSSLPPA 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D EL+ ++ P ++PF R +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--ELV-ALVDPHAEPFRPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G K L DTFR+ A DQLK A + + S +D A +A E + + ++ Sbjct: 125 YQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAAEGVAKFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 +V+I+DT+GR L + ++ + P + VLD+T GQ A Q F A Sbjct: 185 EVIIVDTSGRHKQEEELFTEMTQIQNAV------TPDQTILVLDSTIGQAAEAQSAAFKA 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V P+ FLG GE + DLE F K F + G Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHLMDLERFEPKAFVQKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|119872111|ref|YP_930118.1| GTP-binding signal recognition particle [Pyrobaculum islandicum DSM 4184] gi|158512993|sp|A1RS43|SRP54_PYRIL RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|119673519|gb|ABL87775.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pyrobaculum islandicum DSM 4184] Length = 433 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/232 (36%), Positives = 122/232 (52%), Gaps = 12/232 (5%) Query: 84 VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143 +LYD EL+ L+ +P + +P+++L++GV G GKTT KL++ + G +V Sbjct: 76 ILYD--ELVK--LLGGEQPAEFKPVKKPYLVLLLGVEGSGKTTTAAKLARYLVKRGYRVG 131 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 L DT R AA DQLK A++ F DA +A + K +DV+IIDTAG Sbjct: 132 LVETDTIRPAAFDQLKQLAEKIGVPFYGERDSKDAVEIARRGVQNF--KNMDVVIIDTAG 189 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 R N L+ + KMI + P V+ V+DAT G+ A Q E F +I+ Sbjct: 190 RHKNEEALLQEV-KMI-----YEAVNPDEVILVIDATVGKLAAAQAEAFMKYLPIHSVII 243 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TKMD TARGGG + V+ V F+GVGE +++ + F + F A + G D Sbjct: 244 TKMDSTARGGGALAAVIKTGARVKFIGVGEDVDEFDLFNPRKFVARVLGMGD 295 >gi|251788621|ref|YP_003003342.1| signal recognition particle protein [Dickeya zeae Ech1591] gi|247537242|gb|ACT05863.1| signal recognition particle protein [Dickeya zeae Ech1591] Length = 453 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/212 (37%), Positives = 113/212 (53%), Gaps = 13/212 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT +GKL K + + KV++ + D +R AAI QL+ A Sbjct: 97 AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKQKKKVLVVSADVYRPAAIKQLETLAQTVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF SE + A + A+ K DVL++DTAGRLH + +M I ++ Sbjct: 157 VDFFPSEAHEKPIDIVNRALQHAKLKFYDVLLVDTAGRLHVDDAMMDEIKQV-------- 208 Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 HA P L V+DA TGQ+A + F+ TG+I+TK+DG ARGG + I Sbjct: 209 -HASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVILTKIDGDARGGAALSIRHITG 267 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ FLGVGE + LEPF ++ I G D Sbjct: 268 KPIKFLGVGEKTDALEPFYPDRIASRILGMGD 299 >gi|169776553|ref|XP_001822743.1| signal recognition particle protein [Aspergillus oryzae RIB40] gi|83771478|dbj|BAE61610.1| unnamed protein product [Aspergillus oryzae] Length = 527 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 144/301 (47%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ + D+ S LD D + +E+ L+ +D+ V + Q + + + L Sbjct: 9 RINAAVNDLTRSNNLDEKAFDDMLKEICAALLSADVNVRLVQSLRKSIKSSVNFASLPPA 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D EL+ ++ P + PF R +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--ELV-ALVNPHADPFRPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G K L DTFR+ A DQLK A + + S +D A +A E + + ++ Sbjct: 125 YQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAAEGVAKFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 +++I+DT+GR L + ++ + P + VLD+T GQ A Q F A Sbjct: 185 EIIIVDTSGRHKQEEELFTEMTQIQTAV------TPDQTILVLDSTIGQAAEAQSAAFKA 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V P+ FLG GE + DLE F K F + G Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMMDLERFEPKAFIQKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|221633791|ref|YP_002523017.1| signal recognition particle protein [Thermomicrobium roseum DSM 5159] gi|221156000|gb|ACM05127.1| signal recognition particle protein [Thermomicrobium roseum DSM 5159] Length = 488 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/280 (30%), Positives = 138/280 (49%), Gaps = 13/280 (4%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKM 95 +D+ +RE + L+ +D+ V + + + + ++V Q+V+ V + + ++ Sbjct: 27 VDEALRE-VRRALLEADVHYTVVRDFIAAVRERAIGEEVLRSLTPAQQVIAIVHQELVRV 85 Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 L P W S P +I++VG+ G GKTT + KL + G + +L A D +R AA+ Sbjct: 86 LGSERVPLLW-ASQPPTIIMLVGLQGSGKTTQVAKLGYHLRKEGRRPLLVAADIYRPAAV 144 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 +QL+ + D A K A+ + + +IIDTAGRL + +M + Sbjct: 145 EQLRTLGKQHDLPVYDEGTKVDPVETVKHAVKVARDQGYNPVIIDTAGRLQIDEPMMQEL 204 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 +M ++ P +L V DA TGQ A+ + FH TGLI+TK+DG ARGG Sbjct: 205 ERMAEAVR------PTEILLVADAMTGQEAVNVAKEFHRRLSLTGLILTKLDGDARGGAA 258 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I +P+ F+G GE ++ LEPF + I G D Sbjct: 259 LSIRAVVGVPIKFIGTGERVDALEPFYPDRLATRILGMGD 298 >gi|301063509|ref|ZP_07204041.1| signal recognition particle protein [delta proteobacterium NaphS2] gi|300442448|gb|EFK06681.1| signal recognition particle protein [delta proteobacterium NaphS2] Length = 441 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/268 (30%), Positives = 142/268 (52%), Gaps = 12/268 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V +K++E++ + +DV Q+++ V++ + +++ K Sbjct: 38 LLEADVNYKVVKKLIEDIRERAVGQDVLDSLTPGQQIIKIVNDELARLMGESHKGLELT- 96 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 PH +++VG+ G GKTT KL+ + G + +L D +R AA+DQLK + Sbjct: 97 GEMPHSLMLVGLQGSGKTTTAAKLAAHLRKRGRQPLLVPADVYRPAAVDQLKKLGLQIDV 156 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +E G A+ +A A A+ D++I DTAGRLH + LM +++ + ++++ Sbjct: 157 PVYPTEKGQTPDAICMDAMTGAAAQGADIVIFDTAGRLHVDEALM---DELVVIKEKVN- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V DA TGQ+A+ + F+ TG++++KM+G ARGG + I P+ Sbjct: 213 --PTEILLVADAMTGQDAVNVAKSFNETLDITGVVLSKMEGDARGGAALSIKAVTGKPIK 270 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+GVGE I+ LE F ++ I G D Sbjct: 271 FVGVGEKISALELFHPDRMASQILGMGD 298 >gi|330721223|gb|EGG99327.1| Signal recognition particle2C subunit Ffh SRP54 [gamma proteobacterium IMCC2047] Length = 455 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 91/289 (31%), Positives = 146/289 (50%), Gaps = 25/289 (8%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 DD ++ L ++ L+ +D+ + V + +E++ + ++V Q ++ V + Sbjct: 24 DDNIKSTLREVRKALLEADVALPVVKAFIEQVRKRAVGQEVKRSLSPGQALIKVVQNELE 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRS 152 ++ S+ N + P VILV G+ G GKTT +GKL++ + + KV + + D +R Sbjct: 84 NVMGEKSEDLNL-ATQPPAVILVAGLQGAGKTTSVGKLARFLKERHNKKVTVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI QL+ A ADF S +A A + A+ K DVLI+DTAGRLH + +M Sbjct: 143 AAIKQLETLAAEVEADFFPSSADQKPIDIANAAIEHARLKYSDVLILDTAGRLHVDEGMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA TGQ+A + F+ TG+++TK DG Sbjct: 203 DEIKAL---------HAAVEPIETLFVVDAMTGQDAANTAKAFNDALPLTGVVLTKADGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 +RGG + + P+ F+G+GE + LEPF V + LD G+ Sbjct: 254 SRGGAALSVRHITGKPIKFMGMGEKTDALEPFYP---DRVASRILDMGD 299 >gi|329667089|gb|AEB93037.1| signal recognition particle protein [Lactobacillus johnsonii DPC 6026] Length = 476 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 93/306 (30%), Positives = 155/306 (50%), Gaps = 20/306 (6%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F + S +L++ + ++ IS ++D RE + L+ +D+ V + ++++ + Sbjct: 3 FENLSERLQKALKNLTGKGKISEADINDASRE-IRLALLEADVNFKVVKDFIKKIKKEAL 61 Query: 76 AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K+V Q+++ V + + KM+ + N H P +I++VG+ G GKTT +GK Sbjct: 62 GKEVQDSLNPGQQIIKIVDDELTKMMGEETVSLNKS-PHIPTIIMMVGLQGTGKTTTVGK 120 Query: 131 LSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L+ M + + +L AGD +R AAI+QLK + V SE D A + ++A Sbjct: 121 LANYLMKNEKARPLLIAGDIYRPAAIEQLKQIGQQLDVS-VYSEDNQDVAEIVKHGLEEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 K D ++IDTAGRL + LM + ++ V P + L V+DA TGQ A + Sbjct: 180 DKNKNDYVLIDTAGRLEIDEQLMDELKRVTEVAH------PDNTLLVVDAMTGQAATQVA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F+ TG+++TK+DG RGG + I +P+ F G GE + DL F ++ Sbjct: 234 EGFNNDLDLTGIVLTKLDGDTRGGAALSIRAVTGLPIIFTGQGEKLTDLSTFHPDRMASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|326798855|ref|YP_004316674.1| signal recognition particle protein [Sphingobacterium sp. 21] gi|326549619|gb|ADZ78004.1| signal recognition particle protein [Sphingobacterium sp. 21] Length = 446 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/213 (35%), Positives = 115/213 (53%), Gaps = 7/213 (3%) Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWA 162 + + P VIL+ G+NG GKTT GKL+K + + G K +L AGD +R AAIDQL++ A Sbjct: 92 DLELGKNPTVILIAGLNGAGKTTFTGKLAKYLKEKRGKKPLLVAGDVYRPAAIDQLEVLA 151 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 + + D A+A E A+ +V+I+DTAGRL + LM I + Sbjct: 152 QQVDVPVYTNRESKDPIAIAEEGVAAAKRNGQNVVIVDTAGRLAIDEALMNEISAVKEAT 211 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 PH +L V+D+ TGQ+A+ ++F+ TG+++TK+DG RGG + I Sbjct: 212 N------PHEILFVVDSMTGQDAVNTAKVFNDRLDFTGVVLTKLDGDTRGGAALSIKSVV 265 Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE ++ L+ F ++ I G D Sbjct: 266 NKPIKFIGTGEKMDALDVFHPDRMASRILGMGD 298 >gi|114331694|ref|YP_747916.1| signal recognition particle protein [Nitrosomonas eutropha C91] gi|114308708|gb|ABI59951.1| signal recognition particle subunit FFH/SRP54 (srp54) [Nitrosomonas eutropha C91] Length = 449 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 93/290 (32%), Positives = 147/290 (50%), Gaps = 20/290 (6%) Query: 37 SSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVS 89 +R + ++E L ++ LI +D+ + + +E++ + +V S + V Sbjct: 19 EARLTESNIQEALREVRIALIEADVALPAIKVFIEQVKQRAIGHEVLGKLSPGQAFIGV- 77 Query: 90 ELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLA 145 +H+ LM + D + P VIL+ G+ G GKTT GKL+K M KV+L Sbjct: 78 --VHEELMAIMGGDKADINLNVAPPAVILMAGLQGAGKTTSSGKLAKWLMEQKKKKVLLV 135 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 + D +R AAI+QL + A++T ADF + G A ++ A A+ DV+I+DTAGRL Sbjct: 136 SCDIYRPAAIEQLALLAEQTGADFFPVKTGQQPAEISTAALDFARKHHHDVVIVDTAGRL 195 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 + +M I ++ ++L P L V+DA GQ+A+ F V TG+I+TK Sbjct: 196 GIDEAMMQEISQLEQLLN------PVETLFVVDAMQGQDAVNTARAFAEVLPLTGVILTK 249 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +DG ARGG + + P+ F GV E + LEPF ++ I G D Sbjct: 250 LDGDARGGAALSVRHITGKPIKFAGVAEKLTGLEPFYPDRMASRILGMGD 299 >gi|219681749|ref|YP_002468135.1| signal recognition particle protein [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682304|ref|YP_002468688.1| signal recognition particle protein [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471450|ref|ZP_05635449.1| signal recognition particle protein [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219622037|gb|ACL30193.1| signal recognition particle protein [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624592|gb|ACL30747.1| signal recognition particle protein [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086703|gb|ADP66784.1| signal recognition particle protein [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 451 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 95/306 (31%), Positives = 165/306 (53%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + II+ RL ++ ++E E+ L+ +D+ ++V +K +E + K Sbjct: 2 FNNLTQRLSDSLKKIINKGRLTEENIKETIREVRKALLEADVALSVIKKFIENVKKKSIG 61 Query: 77 KDVSVQRVLYDVSELI----HKMLMPL-SKPFNWDFS-HRPHVILVVGVNGVGKTTVIGK 130 +++ + L E I H+++ + K + +FS P VILVVG+ G GKTT + K Sbjct: 62 HEIN--KSLTPGQEFIKIVKHELIFAMGEKNHSLNFSIEPPAVILVVGLQGSGKTTSLAK 119 Query: 131 L-SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L + K+++ + DT+R+AAI+QLKI +D+ DF S+ + A K A Sbjct: 120 LGKWIKNKYKKKILITSTDTYRAAAIEQLKILSDQIEIDFFESDKHHTPIEITKNAIKYA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVL+IDTAGRLH + +M I ++ + K ++ L ++D+ GQ+A+ Sbjct: 180 KLKLYDVLLIDTAGRLHIDKKMMNEIQQIQVISKAIE------TLLIVDSMMGQDAINMA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 ++F+ +G+I+TK DG +R G + + P+ F+G GE I LEPF + + Sbjct: 234 KIFNNDLLISGIILTKTDGDSRSGIALSMRYITGKPIKFIGTGEKIISLEPFHPERIADR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMND 299 >gi|78188776|ref|YP_379114.1| Signal recognition particle protein [Chlorobium chlorochromatii CaD3] gi|78170975|gb|ABB28071.1| signal recognition particle subunit FFH/SRP54 (srp54) [Chlorobium chlorochromatii CaD3] Length = 451 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/268 (31%), Positives = 138/268 (51%), Gaps = 12/268 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ VA+K++E++ K ++V Q ++ V + + +++ KP N Sbjct: 40 LLAADVNYKVAKKLIEDIREKSLGEEVIKSVSPAQMIVKIVYDELTELMGGEQKPLNLSP 99 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 P +I+V G+ G GKTT KL+ ++ G ML A D +R AA+DQLK ++ Sbjct: 100 KKLPAIIMVAGLQGSGKTTFCAKLALRLRKNGKNPMLIAADVYRPAAVDQLKALGEQVEV 159 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V S DA A + + A+A DV+I+DTAGRL + +MA + LK Sbjct: 160 P-VFSVDEKDAMKAALQGLEAAKAAAKDVVIVDTAGRLQIDQAMMAEAEALKNALK---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ GQ A+ + F+ G+++TK+DG ARGG + I + P+ Sbjct: 215 --PDELLFVVDSMMGQEAVNTAKAFNDRLDFDGVVLTKLDGDARGGAALSIRQVVEKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ +GE ++DL+ F + I G D Sbjct: 273 FISIGEKVDDLDIFYPDRMAQRILGMGD 300 >gi|312622773|ref|YP_004024386.1| signal recognition particle protein [Caldicellulosiruptor kronotskyensis 2002] gi|312203240|gb|ADQ46567.1| signal recognition particle protein [Caldicellulosiruptor kronotskyensis 2002] Length = 443 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 93/307 (30%), Positives = 153/307 (49%), Gaps = 22/307 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F+S S KL++ + +L + ++E ++++ L+ +D+ V + + + K Sbjct: 2 FSSLSEKLQDVFKKLRGKGKLTEKDIKEAMKEVKLALLEADVNYKVVKDFINTVTQKAVG 61 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH---VILVVGVNGVGKTTVI 128 ++V Q+V+ ++++ ++ L + + P + ++VG+ G GKTT Sbjct: 62 EEVLESLTPAQQVI----KIVYDEMVNLLGGSDTKLAFSPSGFSIYMLVGLQGSGKTTTA 117 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ + G +L A D +R AAI QL+I A + DA +A E + Sbjct: 118 GKLAGLLKRQGKNPLLVACDIYRPAAIKQLEIVAQKVGVKCFADYNSKDAVKIAKEGIEF 177 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A + DV I+DTAGRLH N LM + + +K P +L VLDA TGQ+A+ Sbjct: 178 AKASRCDVAIVDTAGRLHINQELMDELVAIKNAIK------PTEILLVLDAMTGQDAVNV 231 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 F+ G G+IMTK+DG RGG + + P+ F GVGE + DLE F ++ Sbjct: 232 AAAFNEQLGIDGIIMTKLDGDTRGGAALSVKAITGKPIKFAGVGEKMEDLEAFHPDRMAS 291 Query: 309 VITGCLD 315 I G D Sbjct: 292 RILGMGD 298 >gi|302408571|ref|XP_003002120.1| signal recognition particle 54 kDa protein [Verticillium albo-atrum VaMs.102] gi|261359041|gb|EEY21469.1| signal recognition particle 54 kDa protein [Verticillium albo-atrum VaMs.102] Length = 518 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 89/297 (29%), Positives = 145/297 (48%), Gaps = 22/297 (7%) Query: 27 KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS------ 80 ++ ++D+ + LD E+ RSD+ V + ++ + + + KD+ Sbjct: 9 RINTAVSDLTRAPNLD----EKRSAPPPRSDVNVRLVGQLRKSIKSTVNFKDLPPAVNKK 64 Query: 81 --VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138 +Q+ ++D EL+ K++ P ++PF + +VI+ VG+ G GKTT KL++ Sbjct: 65 RLIQKTVFD--ELV-KLVDPHAEPFKPK-KGKANVIMFVGLQGAGKTTTCTKLARHYQAR 120 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 GLK L DTFR+ A DQLK A + + S +D A +A E + + ++ +V+I Sbjct: 121 GLKACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAVVAREGVDKFKKERFEVII 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +DT+GR L + + +K P + VLDA+ GQ A Q + F A Sbjct: 181 VDTSGRHRQEENLFQEMVDIQAAIK------PDETIMVLDASIGQQAESQAKAFKEAADF 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK DG A GGG I V P+ F+G GE + D E F + F + G D Sbjct: 235 GAIIITKTDGHAHGGGAISAVAATHTPIVFIGTGEHMLDFERFAPQQFVQKLLGMGD 291 >gi|330895929|gb|EGH28213.1| signal recognition particle protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330975468|gb|EGH75534.1| signal recognition particle protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 458 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 154/306 (50%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNV--KERA 59 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N D P VIL+ G+ G GKTT GK Sbjct: 60 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL+ A+ F S+I +A A K+A Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIAQAAIKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K +DV+I+DTAGRLH + +M I + +K P L V+DA TGQ+A Sbjct: 180 RLKFIDVVIVDTAGRLHVDVEMMGEIQALHAAVK------PAETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK+DG ARGG + + P+ F+G+GE + LEPF ++ Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSDALEPFHPDRIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|327483374|gb|AEA77781.1| Signal recognition particle, subunit Ffh SRP54 [Vibrio cholerae LMA3894-4] Length = 475 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 99/307 (32%), Positives = 154/307 (50%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E I + L ++ N + P VIL+ G+ G GKTT +G Sbjct: 60 VGVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KLSK + + K V++ + D +R AAI QL+ A+ DF S +A A Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSSPDQKPIDIANAAIDH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DVLI+DTAGRL + +MA I + + + P L V+DA TGQ+A Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+I+TK+DG ARGG + + P+ F+GVGE + LEPF ++ Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|229592399|ref|YP_002874518.1| signal recognition particle protein [Pseudomonas fluorescens SBW25] gi|229364265|emb|CAY51982.1| signal recognition particle protein [Pseudomonas fluorescens SBW25] Length = 458 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 95/309 (30%), Positives = 156/309 (50%), Gaps = 25/309 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KERA 59 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N D + P V+L+ G+ G GKTT GK Sbjct: 60 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLNLSAVPPAVVLMAGLQGAGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL++ A F S++ +A A K+A Sbjct: 120 LARFLKERKKKSVMVVSADVYRPAAIKQLEMLAGEVGVTFFPSDLSQKPVDIANAAIKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246 + K +DV+I+DTAGRLH + +M I + HA P L V+DA TGQ+A Sbjct: 180 KLKFIDVVIVDTAGRLHIDEEMMGEIKAL---------HAAINPVETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F TG+I+TK+DG ARGG + + P+ F+G+GE + LEPF + Sbjct: 231 NTAKAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSDALEPFHPERI 290 Query: 307 SAVITGCLD 315 ++ I G D Sbjct: 291 ASRILGMGD 299 >gi|312793157|ref|YP_004026080.1| signal recognition particle protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312878372|ref|ZP_07738282.1| signal recognition particle protein [Caldicellulosiruptor lactoaceticus 6A] gi|311794857|gb|EFR11276.1| signal recognition particle protein [Caldicellulosiruptor lactoaceticus 6A] gi|312180297|gb|ADQ40467.1| signal recognition particle protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 443 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/203 (37%), Positives = 107/203 (52%), Gaps = 6/203 (2%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 + ++VG+ G GKTT GKL+ + G +L A D +R AAI QL++ A + Sbjct: 102 IYMMVGLQGSGKTTTAGKLAGLLKKQGKNPLLVACDIYRPAAIKQLEVVAQKVGVKCFAD 161 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 DA +A E + A+A + DV I+DTAGRLH N LM + + +K P Sbjct: 162 YNSKDAVKIAKEGIEFAKANRCDVAIVDTAGRLHINQELMDELVSIKNAIK------PTE 215 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 +L VLDA TGQ+A+ F+ G G+IMTK+DG RGG + + P+ F GVG Sbjct: 216 ILLVLDAMTGQDAVNVATAFNEQLGIDGIIMTKLDGDTRGGAALSVKAITGKPIKFAGVG 275 Query: 293 EGINDLEPFVAKDFSAVITGCLD 315 E + DLE F ++ I G D Sbjct: 276 EKMEDLEAFHPDRMASRILGMGD 298 >gi|260574838|ref|ZP_05842840.1| signal recognition particle protein [Rhodobacter sp. SW2] gi|259022843|gb|EEW26137.1| signal recognition particle protein [Rhodobacter sp. SW2] Length = 497 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 89/269 (33%), Positives = 139/269 (51%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA+ V + K + V+ Q+V+ V + + ++L Sbjct: 38 LLEADVSLPVARDFVAAVQAKATGQSVTKSVTPGQQVVKIVHDELIRVLAGDGPADALKI 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P +L+VG+ G GKTT KL+K++ D G +V+LA+ DT R AA++QL+I A + Sbjct: 98 DNPPACVLMVGLQGSGKTTTTAKLAKRLHDKQGKRVLLASLDTNRPAAMEQLQILAAQVG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G A +A A QA DVL +DTAGRLH + LMA + + +R D Sbjct: 158 VDSLPIVKGESATQIAKRAKAQATMGGYDVLFLDTAGRLHIDEALMAEV-QAVR-----D 211 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+D TGQ+A+ F G TG+++T+MDG RGG + + P+ Sbjct: 212 IAQPRETLLVVDGLTGQDAVNVATEFDGKVGITGVVLTRMDGDGRGGAALSMRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ LE F + I G D Sbjct: 272 RFVGMGEKMDALETFEPDRVAGRILGMGD 300 >gi|237741085|ref|ZP_04571566.1| signal recognition particle protein [Fusobacterium sp. 4_1_13] gi|256846224|ref|ZP_05551681.1| signal recognition particle protein [Fusobacterium sp. 3_1_36A2] gi|229430617|gb|EEO40829.1| signal recognition particle protein [Fusobacterium sp. 4_1_13] gi|256717993|gb|EEU31549.1| signal recognition particle protein [Fusobacterium sp. 3_1_36A2] Length = 444 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 108/207 (52%), Gaps = 6/207 (2%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P +I++ G+ G GKTT KL+K + K++L D +R AAI QL++ + D Sbjct: 98 RNPTIIMLAGLQGAGKTTFAAKLAKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVD 157 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 E D +A A ++A+ +I+DTAGRLH + LM + ++ R +K Sbjct: 158 VYSEEDTKDVVGIATRAIEKAKEINATYMIVDTAGRLHIDETLMEELKELKRAIK----- 212 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P +L V+DA GQ+A+ E F+ G+I+TK+DG RGG + I P+ F Sbjct: 213 -PQEILLVVDAMIGQDAVNLAESFNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKF 271 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +GVGE +ND+E F + I G D Sbjct: 272 IGVGEKLNDIEIFHPDRLVSRILGMGD 298 >gi|220918542|ref|YP_002493846.1| signal recognition particle protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219956396|gb|ACL66780.1| signal recognition particle protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 550 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 99/317 (31%), Positives = 155/317 (48%), Gaps = 24/317 (7%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + ++KGF + KLK G T+I + +DD +R+ + L+ +D+ V ++ V + Sbjct: 1 MLETVSKGFKAARNKLK-GRTEI-TPEVVDDALRD-IRVSLLEADVSFDVVKRFVARVRE 57 Query: 73 KRYAKDVSVQ--------RVLYD--VSELIHKMLMPLSKPFNWDFSH----RPHVILVVG 118 K + V + RV ++ H L L P + RP I++VG Sbjct: 58 KAIGEVVETKVKTEKGQLRVTPQDHFVKICHDELEALMGPVDTSLRQGERGRPTGIMMVG 117 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 + G GKTT GK++ ++ G +VML A D +R AA+DQLK+ +R V E G Sbjct: 118 LQGSGKTTTAGKIANRLLKDGKQVMLVAADVYRPAAVDQLKVLGERLGVP-VFHEPGVSP 176 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 + AF+ AQ + +I DTAGRL + LM + + + AP ++L V D Sbjct: 177 PDMCRHAFEAAQRDHRNAVIYDTAGRLAIDDELMTELENIKANV------APENILLVAD 230 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A GQ+A++ F G I+TK+DG ARGG + I P+ FLG+GE ++ L Sbjct: 231 AMIGQDAVKTATEFDRRLAIDGFILTKLDGDARGGAALSIKEVTGKPIKFLGMGEALDRL 290 Query: 299 EPFVAKDFSAVITGCLD 315 E F + ++ I G D Sbjct: 291 EEFRPEGLASRILGFGD 307 >gi|124023656|ref|YP_001017963.1| signal recognition particle protein (SRP54) [Prochlorococcus marinus str. MIT 9303] gi|123963942|gb|ABM78698.1| signal recognition particle protein (SRP54) [Prochlorococcus marinus str. MIT 9303] Length = 494 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/287 (29%), Positives = 149/287 (51%), Gaps = 17/287 (5%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIH 93 IS ++D +++ + L+ +D+ + V ++ V+E+ K +V V+ V D +++H Sbjct: 22 ISDTNVEDALKQ-VRRALLGADVSLEVVREFVDEVRQKAVGAEV-VRGVTPDQKFVQVVH 79 Query: 94 KMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + L+ + N + P V+L+ G+ G GKTT KL + D G + ++ A D + Sbjct: 80 QQLVEVMGGDNAPMAEAKDSPTVVLMAGLQGAGKTTATAKLGLHLKDQGQRPLMVAADVY 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 R AAIDQL+ ++ D +G D +A +A+ + D L++DTAGRL + Sbjct: 140 RPAAIDQLRTLGEQIGVDVFS--LGDDVKPEEIAAAGLAKAREEGFDTLLVDTAGRLQID 197 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 + +M +M+R+ ++P VL V+D+ GQ A FH G TG ++TK+DG Sbjct: 198 TEMME---EMVRIRSAVEPD---EVLLVVDSMIGQEAAELTRAFHDKVGITGSVLTKLDG 251 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + I P+ F+G GE + L+PF + ++ I G D Sbjct: 252 DSRGGAALSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRILGMGD 298 >gi|295399784|ref|ZP_06809765.1| signal recognition particle protein [Geobacillus thermoglucosidasius C56-YS93] gi|312111704|ref|YP_003990020.1| signal recognition particle protein [Geobacillus sp. Y4.1MC1] gi|294978187|gb|EFG53784.1| signal recognition particle protein [Geobacillus thermoglucosidasius C56-YS93] gi|311216805|gb|ADP75409.1| signal recognition particle protein [Geobacillus sp. Y4.1MC1] Length = 446 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 112/209 (53%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 S P VI++VG+ G GKTT GKL+ + ML A D +R AAI QL+ + + Sbjct: 98 SRPPTVIMMVGLQGAGKTTTTGKLANLLRKRYNRNPMLVAADIYRPAAIKQLETLGKQLN 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 +A +A ++A+ + D ++IDTAGRLH + LM + +M + K Sbjct: 158 MPVFSLGDQVSPVEIAKQAIEKAKEEHYDYVLIDTAGRLHIDETLMDELKQMKEIAK--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P + V+DA TGQ+A+ + FH G TG+I+TK+DG RGG + I P+ Sbjct: 215 ---PDEIFLVVDAMTGQDAVNVAQSFHEQLGITGVILTKLDGDTRGGAALSIRAVTNTPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ LEPF + ++ I G D Sbjct: 272 KFVGMGEKLDALEPFHPERMASRILGMGD 300 >gi|320530761|ref|ZP_08031805.1| signal recognition particle protein [Selenomonas artemidis F0399] gi|320137048|gb|EFW28986.1| signal recognition particle protein [Selenomonas artemidis F0399] Length = 458 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 91/280 (32%), Positives = 146/280 (52%), Gaps = 14/280 (5%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKM 95 ++D +RE + L+ +D+ V + V+ + + ++V + Q V+ V E + ++ Sbjct: 28 VNDAMRE-VRMALLEADVNFKVVKDFVKRVKERAVGQEVLDTLTAAQAVIKIVDEELTEL 86 Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 + N + P VI++VG+ G GKTT GKL+ + G + +L A D +R AAI Sbjct: 87 MGGTESRLNIS-PNPPTVIMLVGLQGSGKTTSAGKLALMLKKQGKRPLLVADDIYRPAAI 145 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 QL++ ++ V S+ DA A+A + + A DV+IIDTAGRL + LM + Sbjct: 146 KQLEVIGEKVGVP-VFSQGQEDAVAIARASIAYSAAHANDVVIIDTAGRLQIDETLMQEL 204 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 + ++ PH +L V+DA TGQ A+ F A G G++MTK+DG ARGG Sbjct: 205 RDIKAAVQ------PHEILLVVDAMTGQEAVNVAAAFDASLGLDGIVMTKLDGDARGGAA 258 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I PV F+G+GE ++ LE F ++ I G D Sbjct: 259 LSIKAVTGRPVKFVGMGEKLDPLEVFHPDRMASRILGMGD 298 >gi|261867191|ref|YP_003255113.1| signal recognition particle protein [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412523|gb|ACX81894.1| signal recognition particle protein [Aggregatibacter actinomycetemcomitans D11S-1] Length = 459 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 100/307 (32%), Positives = 160/307 (52%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + +I RL +D +++ L ++ L+ +D+ + V + + ++ K A Sbjct: 2 FENLSDRLSKTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINKV--KERA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E + + L ++ N + P VIL+ G+ G GKTT +G Sbjct: 60 IGVEVNKSLTPGQEFVKIVQAELEAAMGEANESLNL-AAQPPAVILMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+K + + KV++ + D +R AAI QL+ A +ADF S++ + +A A + Sbjct: 119 KLAKFLRERHKKKVLVVSADVYRPAAIKQLETLAQAVNADFFPSDVKQNPVEIAKAALAE 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DVLI+DTAGRLH + +M I ++ L P L +DA TGQ+A Sbjct: 179 AKLKFYDVLIVDTAGRLHVDGEMMDEIKQVHAALN------PVETLFTVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF ++ Sbjct: 233 AKAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|16330898|ref|NP_441626.1| signal recognition particle protein [Synechocystis sp. PCC 6803] gi|2500885|sp|P74214|SRP54_SYNY3 RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog gi|1653392|dbj|BAA18306.1| signal recognition particle protein [Synechocystis sp. PCC 6803] Length = 482 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 90/281 (32%), Positives = 145/281 (51%), Gaps = 29/281 (10%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85 D IS + + + +E+ L+ +D+ + V + ++++ K DV +++ Sbjct: 20 DKISESNIKEAL-QEVRRALLAADVNLQVVKGFIKDVEQKALGADVISGVNPGQQFIKIV 78 Query: 86 YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 YD EL++ M +PL++ P VIL+ G+ G GKTT KL+ + Sbjct: 79 YD--ELVNLMGESNVPLAQA-----EQAPTVILMAGLQGTGKTTATAKLALYLRKQKRSA 131 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIID 200 ++ A D +R AAIDQLK + D ++GSDA +A + ++A+ VD ++ID Sbjct: 132 LMVATDVYRPAAIDQLKTLGQQI--DVPVFDLGSDANPVEIARQGVEKAKELGVDTVLID 189 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL + +MA + ++ +V+K P L V+DA TGQ A FH G TG Sbjct: 190 TAGRLQIDPQMMAELAEIKQVVK------PDDTLLVVDAMTGQEAANLTHTFHEQIGITG 243 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 I+TK+DG RGG + + P+ F+GVGE + L+PF Sbjct: 244 AILTKLDGDTRGGAALSVRQISGQPIKFVGVGEKVEALQPF 284 >gi|315633590|ref|ZP_07888880.1| signal recognition particle protein [Aggregatibacter segnis ATCC 33393] gi|315477632|gb|EFU68374.1| signal recognition particle protein [Aggregatibacter segnis ATCC 33393] Length = 459 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 101/307 (32%), Positives = 157/307 (51%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + +I RL +D ++E L ++ L+ +D+ + V + + + K A Sbjct: 2 FENLSDRLSKTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFINNV--KERA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E + + L ++ N + P VIL+ G+ G GKTT +G Sbjct: 60 IGVEVNKSLTPGQEFVKIVQAELEAAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+K + + KV++ + D +R AAI QL+ A + DF S++ +A A Sbjct: 119 KLAKFLRERHKKKVLVVSADVYRPAAIKQLETLAQAVNVDFFPSDVKQKPVDIAKAALAD 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DVLI+DTAGRLH +S +M I ++ L P L +DA TGQ+A Sbjct: 179 AKLKFYDVLIVDTAGRLHVDSEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF ++ Sbjct: 233 AKAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|254466450|ref|ZP_05079861.1| signal recognition particle protein [Rhodobacterales bacterium Y4I] gi|206687358|gb|EDZ47840.1| signal recognition particle protein [Rhodobacterales bacterium Y4I] Length = 505 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 87/269 (32%), Positives = 141/269 (52%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVA----QKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA +K+ E+ + K V+ Q+V+ V + + +L P Sbjct: 38 LLEADVSLPVARDFVKKVQEQATGQAVTKSVTPGQQVVKIVHDALVDVLRGDEDPGKLKV 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P +L+VG+ G GKTT GKL+K++ + G KV++A+ D +R AA+DQL + + Sbjct: 98 DNPPAPVLMVGLQGSGKTTTTGKLAKRLKEKEGKKVLMASLDVYRPAAMDQLAVLGMQIG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G +A A +QA DV ++DTAGRLH + LM + + V+ Sbjct: 158 VDTLPIVPGQKPVDIAKRAKQQATLGGYDVYMLDTAGRLHIDETLMQEVEDVRNVV---- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 +P L V+D TGQ A+ E F A G +G+++T+MDG RGG + + P+ Sbjct: 214 --SPRETLLVVDGLTGQVAVEVAEEFDAKIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ LE F A + I G D Sbjct: 272 RFVGLGEKMDALETFEADRIAGRILGMGD 300 >gi|298490416|ref|YP_003720593.1| signal recognition particle protein ['Nostoc azollae' 0708] gi|298232334|gb|ADI63470.1| signal recognition particle protein ['Nostoc azollae' 0708] Length = 485 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 149/295 (50%), Gaps = 29/295 (9%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85 D IS + D +RE + L+ +D+ + V + + E+ TK +V +++ Sbjct: 20 DKISQSNIQDALRE-VRRALLEADVNLQVVKDFISEVETKAQGAEVITGVRPDQQFIKIV 78 Query: 86 YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 YD EL+ M +PL+ + + ++L+ G+ G GKTT KL+ + Sbjct: 79 YD--ELVQVMGEENIPLA-----EVEGKTTIVLMAGLQGTGKTTATAKLALHLRKLNRSC 131 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIID 200 +L A D +R AAI+QL + D E+GSDA +A + + A+A+ ++ +I+D Sbjct: 132 LLVATDVYRPAAIEQLLTLGKQI--DVPVFELGSDADPVEIARQGVEHARAEGINTVIVD 189 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL + +MA + ++ ++ P L V+D+ TGQ A FH G TG Sbjct: 190 TAGRLQIDQDMMAELSRIKSTIE------PDETLLVVDSMTGQEAANLTRTFHDQIGITG 243 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I+TK+DG +RGG + + P+ F+GVGE + L+PF + ++ I G D Sbjct: 244 AILTKLDGDSRGGAALSVRQISGAPIKFVGVGEKVEALQPFYPERMASRILGMGD 298 >gi|34763935|ref|ZP_00144833.1| SIGNAL RECOGNITION PARTICLE, SUBUNIT FFH/SRP54 [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886292|gb|EAA23570.1| SIGNAL RECOGNITION PARTICLE, SUBUNIT FFH/SRP54 [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 444 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/210 (33%), Positives = 111/210 (52%), Gaps = 9/210 (4%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P +I++ G+ G GKTT KL+K + K++L D +R AAI QL++ + D Sbjct: 98 RNPTIIMLAGLQGAGKTTFAAKLAKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVD 157 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 E D +A A ++A+ +I+DTAGRLH + LM + ++ R +K Sbjct: 158 VYSEEDTKDVVGIATRAIEKAKEINATYMIVDTAGRLHIDETLMEELKELKRAIK----- 212 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P +L V+DA GQ+A+ E F+ G+I+TK+DG RGG + I P+ F Sbjct: 213 -PQEILLVVDAMIGQDAVNLAESFNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKF 271 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 +GVGE +ND+E F +++G L G+ Sbjct: 272 IGVGEKLNDIEIFHP---DRLVSGILGMGD 298 >gi|293391030|ref|ZP_06635364.1| signal recognition particle protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951564|gb|EFE01683.1| signal recognition particle protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 459 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 100/307 (32%), Positives = 160/307 (52%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + +I RL +D +++ L ++ L+ +D+ + V + + ++ K A Sbjct: 2 FENLSDRLSKTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINKV--KERA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E + + L ++ N + P VIL+ G+ G GKTT +G Sbjct: 60 IGVEVNKSLTPGQEFVKIVQAELETAMGEANESLNL-AAQPPAVILMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+K + + KV++ + D +R AAI QL+ A +ADF S++ + +A A + Sbjct: 119 KLAKFLRERHKKKVLVVSADVYRPAAIKQLETLAQAVNADFFPSDVKQNPVEIAKAALAE 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DVLI+DTAGRLH + +M I ++ L P L +DA TGQ+A Sbjct: 179 AKLKFYDVLIVDTAGRLHVDGEMMDEIKQVHAALN------PVETLFTVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF ++ Sbjct: 233 AKAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|42519388|ref|NP_965318.1| signal recognition particle protein [Lactobacillus johnsonii NCC 533] gi|41583676|gb|AAS09284.1| signal recognition particle protein [Lactobacillus johnsonii NCC 533] Length = 476 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 93/306 (30%), Positives = 155/306 (50%), Gaps = 20/306 (6%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F + S +L++ + ++ IS ++D RE + L+ +D+ V + ++++ + Sbjct: 3 FENLSERLQKALKNLTGKGKISEADINDASRE-IRLALLEADVNFKVVKDFIKKIKKEAL 61 Query: 76 AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K+V Q+++ V + + KM+ + N H P +I++VG+ G GKTT +GK Sbjct: 62 GKEVQDSLNPGQQIIKIVDDELTKMMGEEAVSLNKS-PHIPTIIMMVGLQGTGKTTTVGK 120 Query: 131 LSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L+ M + + +L AGD +R AAI+QLK + V SE D A + ++A Sbjct: 121 LANYLMKNEKARPLLIAGDIYRPAAIEQLKQIGQQLDVP-VYSEDNQDVAEIVKHGLEEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 K D ++IDTAGRL + LM + ++ V P + L V+DA TGQ A + Sbjct: 180 DKNKNDYVLIDTAGRLEIDEQLMDELKRVTEVAH------PDNTLLVVDAMTGQAATQVA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F+ TG+++TK+DG RGG + I +P+ F G GE + DL F ++ Sbjct: 234 EGFNNDLDLTGIVLTKLDGDTRGGAALSIRAVTGLPIIFTGQGEKLTDLSTFHPDRMASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|312127973|ref|YP_003992847.1| signal recognition particle protein [Caldicellulosiruptor hydrothermalis 108] gi|311777992|gb|ADQ07478.1| signal recognition particle protein [Caldicellulosiruptor hydrothermalis 108] Length = 443 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/203 (37%), Positives = 107/203 (52%), Gaps = 6/203 (2%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 + ++VG+ G GKTT GKL+ + G +L A D +R AAI QL++ A + Sbjct: 102 IYMMVGLQGSGKTTTAGKLAGLLKKQGKNPLLVACDIYRPAAIKQLEVVAQKVGVKCFAD 161 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 DA +A E + A+A + DV I+DTAGRLH N LM + + +K P Sbjct: 162 YNSKDAVKIAKEGIEFAKASRCDVAIVDTAGRLHINQELMDELVSIKNAIK------PTE 215 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 +L VLDA TGQ+A+ F+ G G+IMTK+DG RGG + + P+ F GVG Sbjct: 216 ILLVLDAMTGQDAVNVATAFNEQLGIDGIIMTKLDGDTRGGAALSVKAITGKPIKFAGVG 275 Query: 293 EGINDLEPFVAKDFSAVITGCLD 315 E + DLE F ++ I G D Sbjct: 276 EKMEDLEAFHPDRMASRILGMGD 298 >gi|212703525|ref|ZP_03311653.1| hypothetical protein DESPIG_01570 [Desulfovibrio piger ATCC 29098] gi|212673025|gb|EEB33508.1| hypothetical protein DESPIG_01570 [Desulfovibrio piger ATCC 29098] Length = 502 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/285 (30%), Positives = 145/285 (50%), Gaps = 13/285 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 ++ + G+RE + L+ +D+ V + VE + K +++ Q+V+ V E Sbjct: 22 LTEENIQAGLRE-VRLALLEADVNFKVVKDFVENVRQKCLGQELIKGVSPAQQVVKIVHE 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + +L + N P VI++VG+ G GKTT GK++ + ++ L D + Sbjct: 81 ELVGLLGGETAGLNLQ-GQEPAVIMLVGLQGSGKTTSAGKIANLLRKQKMRPYLVPADVY 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAIDQL + A + S + + +A +A + A+ ++ V+++DTAGRLH + Sbjct: 140 RPAAIDQLTVLAKQLDMPCFPSTVDMNPVDIARQAMEAAREQQATVVLLDTAGRLHVDEP 199 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + + + P +L V DA TGQ+A+ E F+ G TG+++TKMDG A Sbjct: 200 LMQELAAIKAAVN------PQEILFVADAMTGQDAVTVAESFNERLGLTGVVLTKMDGDA 253 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I PV F+G+GE ++++E F + I G D Sbjct: 254 RGGAALSIRAVTGAPVKFVGMGEKLSEMEIFHPDRIAGRILGMGD 298 >gi|116753684|ref|YP_842802.1| signal recognition particle protein Srp54 [Methanosaeta thermophila PT] gi|121693787|sp|A0B638|SRP54_METTP RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|116665135|gb|ABK14162.1| signal recognition particle subunit FFH/SRP54 (srp54) [Methanosaeta thermophila PT] Length = 444 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 93/279 (33%), Positives = 145/279 (51%), Gaps = 17/279 (6%) Query: 41 LDDGVREELEDLLIRSDIGV----AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96 +DD VR+ ++ L+++D+ V +++ +I E L ++ ++ + V ++++ L Sbjct: 28 VDDAVRD-IQRALLQADVNVKLVMSLSNRIRERALNEKPPAGMNPRE---HVINIVYQEL 83 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 + L D + I++VG+ G GKTT KL+ GL+ + DTFR+ A D Sbjct: 84 INLIGR-GTDIPLKKQTIMLVGLQGSGKTTTAAKLATYFQRRGLRTAVICADTFRAGAYD 142 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QLK DR F + +A +A + KK DV I+DTAGR S L+ + Sbjct: 143 QLKALCDRQGIFFYGEKGNENAPEVAKNGLEAT--KKYDVRIVDTAGRHALESDLIQEMK 200 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + V+ +A H +L V+DA GQ A Q F+ G TG+I+TK+DGTA+GGG + Sbjct: 201 DIHAVV-----NADHKLL-VMDAAIGQQASEQARAFNEAVGITGVIITKLDGTAKGGGAL 254 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 V K V F+GVGE +DLE F A F + + G D Sbjct: 255 SAVAETKTSVAFIGVGETASDLEKFEADRFISRLLGMGD 293 >gi|126698849|ref|YP_001087746.1| signal recognition particle protein [Clostridium difficile 630] gi|115250286|emb|CAJ68108.1| Signal recognition particle protein [Clostridium difficile] Length = 450 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 111/208 (53%), Gaps = 6/208 (2%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P ++++VG+ G GKTT GKL G K +L A D +R AAI QL++ ++ Sbjct: 98 SKPPTILMMVGLQGAGKTTTAGKLGGYFKKQGKKPLLVACDIYRPAAIKQLQVVGEKLDI 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + +A A D++IIDTAGRLH + +LM + + +K Sbjct: 158 PVFNMGDKENPVNIAKAGLNHAIKNANDLVIIDTAGRLHIDEVLMDELKSIKSEVK---- 213 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 PH +L V+D+ TGQ+A+ E F+ G G+++TK+DG RGG + I + P+ Sbjct: 214 --PHEILLVVDSMTGQDAVNVAESFNEALGVDGVVLTKLDGDTRGGAALSIRAVTQKPIK 271 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++D+EPF ++ I G D Sbjct: 272 FMGMGEKLDDIEPFHPDRMASRILGMGD 299 >gi|261210129|ref|ZP_05924427.1| signal recognition particle subunit Ffh SRP54 [Vibrio sp. RC341] gi|260840894|gb|EEX67436.1| signal recognition particle subunit Ffh SRP54 [Vibrio sp. RC341] Length = 462 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 99/307 (32%), Positives = 154/307 (50%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E I + L ++ N + P VIL+ G+ G GKTT +G Sbjct: 60 VGVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KLSK + + K V++ + D +R AAI QL+ A+ DF S +A A Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSSPDQKPIDIANAAIDH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DVLI+DTAGRL + +MA I + + + P L V+DA TGQ+A Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+I+TK+DG ARGG + + P+ F+GVGE + LEPF ++ Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|227872399|ref|ZP_03990746.1| signal recognition particle protein Ffh [Oribacterium sinus F0268] gi|227841759|gb|EEJ52042.1| signal recognition particle protein Ffh [Oribacterium sinus F0268] Length = 459 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/218 (36%), Positives = 116/218 (53%), Gaps = 14/218 (6%) Query: 104 NWDFSHRPH----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 N + RP V+++VG+ G GKTT KL+ K K +L A D +R AAI+QL+ Sbjct: 91 NTELKLRPQSEITVLMMVGLQGAGKTTTAAKLAGKFQKQHRKPLLVACDIYRPAAIEQLR 150 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 + A++ S F +A +A+++A+AK ++LI+DTAGRL + LM Sbjct: 151 VNAEKLSIPFFSLGNQVKPEEIAKKAYEEAKAKGYNLLILDTAGRLQIDDALM------- 203 Query: 220 RVLKRLDPHAP--HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 LKR+ P ++L V DA TGQ A+ E F G G+I++K DG RGG + Sbjct: 204 EELKRMKSAVPVDWTILTV-DAMTGQEAVNVAESFSKEVGVNGVILSKCDGDTRGGAALS 262 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I P+ +LG+GE ++DLEPF + I G D Sbjct: 263 IKAMTGQPILYLGMGEKLSDLEPFYPDRMAGRILGMGD 300 >gi|156844088|ref|XP_001645108.1| hypothetical protein Kpol_538p10 [Vanderwaltozyma polyspora DSM 70294] gi|156115765|gb|EDO17250.1| hypothetical protein Kpol_538p10 [Vanderwaltozyma polyspora DSM 70294] Length = 577 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 109/207 (52%), Gaps = 6/207 (2%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + ++I+ VG+ G GKTT KL+ G KV L DTFR+ A DQLK A + Sbjct: 109 RKTNIIMFVGLQGSGKTTSCTKLAVYYQKRGFKVGLVCADTFRAGAFDQLKQNAIKAHIP 168 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 F S +D +A E + + +K D++I+DT+GR L +MI + + Sbjct: 169 FYGSYTEADPVRVASEGIAKFKKEKFDIIIVDTSGRHRQEEQLFQ---EMIEISNEI--- 222 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P+ + VLDA+ GQ A +Q + F + +I+TKMDG A+GGG I V P+ F Sbjct: 223 KPNQTIMVLDASIGQAAEQQSKAFKESSDFGAIILTKMDGHAKGGGAISAVAATNTPIIF 282 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +G GE I+DLE F K F + + G D Sbjct: 283 IGTGEHIHDLEKFSPKSFVSKLLGIGD 309 >gi|326480631|gb|EGE04641.1| signal recognition particle protein [Trichophyton equinum CBS 127.97] Length = 534 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/301 (28%), Positives = 149/301 (49%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ ++D+ S +D D + +E+ L+ +D+ V + Q++ + + + Sbjct: 9 RINAAVSDLTRSNAVDEKALDAMIKEICAALLSADVNVRLVQQLRKSIKAAVQLPSIPPA 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D +L+ ++ P ++PF + +VI++VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--QLV-ALVDPHAEPFKPK-KGKSNVIMMVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G K L DTFR+ A DQLK A + + S +D ++ E + + ++ Sbjct: 125 YQTQGFKAALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPVVVSSEGVAKFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D++I+DT+GR L + ++ +K P + VLD+T GQ A Q F + Sbjct: 185 DIIIVDTSGRHRQEEDLFTEMTQIQSAIK------PDQTIMVLDSTIGQAAETQSAAFKS 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V + P+ FLG GE + DLE F + F + G Sbjct: 239 AADFGAIIITKTDGHAAGGGAISAVAATRTPIIFLGTGEHMLDLERFAPRPFVQKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|257066792|ref|YP_003153048.1| signal recognition particle protein [Anaerococcus prevotii DSM 20548] gi|256798672|gb|ACV29327.1| signal recognition particle protein [Anaerococcus prevotii DSM 20548] Length = 445 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 96/305 (31%), Positives = 154/305 (50%), Gaps = 19/305 (6%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F S +L+E + + +S + +D +RE + L+ +D+ V + V+ + + Sbjct: 3 FEGLSERLQETLGKLTGKGKLSEKDIDAAMRE-IRLSLLEADVNYKVVKDFVKTIKERSL 61 Query: 76 AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +DV Q V+ V+E + ++ + + S PH++++VG+ G GKTT GK Sbjct: 62 GQDVMTSLSPGQMVVKIVNEELTALMGKENSKLDLKGST-PHMVMMVGLQGSGKTTHSGK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ K+ ML A D +R AAI+QLK+ +T+ V + D A EA A+ Sbjct: 121 LALKLKKENRNPMLTALDIYRPAAIEQLKVVG-KTAGVEVFDKDKQDPVKTAREAKDYAR 179 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DV+I+DTAGRL ++ LM + + + P +L V+DA TGQ A+ + Sbjct: 180 LNNHDVVILDTAGRLQIDTDLMDELKNIKEAVN------PDEILLVVDAMTGQEAVNVAK 233 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F TG+++TK+DG ARGG + I P+ F+GVGE + DLEPF + I Sbjct: 234 TFDDYLDITGVVLTKLDGDARGGAALSIRQVVGKPIKFIGVGEKLEDLEPFHPDRMANRI 293 Query: 311 TGCLD 315 G D Sbjct: 294 LGMGD 298 >gi|108763420|ref|YP_633013.1| signal recognition particle protein [Myxococcus xanthus DK 1622] gi|108467300|gb|ABF92485.1| signal recognition particle protein [Myxococcus xanthus DK 1622] Length = 548 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 100/323 (30%), Positives = 153/323 (47%), Gaps = 35/323 (10%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEE 69 + +TKGF + +L G +++ V E L D+ L+ +D+ V +K V Sbjct: 1 MLETVTKGFRAAKNRLA-GKSELTPEL-----VDESLRDIRVSLLEADVAFDVVKKFVAR 54 Query: 70 LLTKRYAKDVSVQRVLYDVS-------------ELIHKMLMPLSKPFNWDFSHRPHV--- 113 + K + VQ + D + ++ H L L P + +P Sbjct: 55 VREKSVGE--LVQTTITDTAGQKRKVSPMDHFIKICHDELEALMGPVDTSLKLKPKGQLS 112 Query: 114 -ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 I++VG+ G GKTT GKL+ ++ G K +L A D +R AA+DQLK+ +R V Sbjct: 113 GIMMVGLQGSGKTTTTGKLASRLLQEGRKPLLVAADIYRPAAVDQLKVLGERLKVP-VYH 171 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 E G LA + A+ +K DV++IDTAGRL + LMA + + ++ P + Sbjct: 172 EPGIQPPELAKRGYAAAREQKCDVVLIDTAGRLAIDESLMAELESIKGNVQ------PDN 225 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 +L V DA GQ+A+R F G I+TK+DG ARGG + I P+ FLG+G Sbjct: 226 ILLVCDAMIGQDAVRTAAEFDRRLTLDGFILTKLDGDARGGAALSIKEVTGKPIKFLGMG 285 Query: 293 EGINDLEPFVAKDFSAVITGCLD 315 E ++ LE F + I G D Sbjct: 286 ESMDKLEEFRPAGLAGRILGFGD 308 >gi|5912327|emb|CAB56092.1| cell division protein [Rickettsia rhipicephali] Length = 136 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 62/136 (45%), Positives = 93/136 (68%), Gaps = 2/136 (1%) Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237 A++AY +++ + +D+L IDTAGRLHN LM + K+++V+K+LD +AP HSVL V+ Sbjct: 2 ASVAYRGMEESIKQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDKNAPTHSVL-VI 60 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA TGQN QVE F+ TGLI+TK+DG+A+ G ++ +V +P+YF+G+GE I D Sbjct: 61 DAITGQNTYNQVEHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIED 120 Query: 298 LEPFVAKDFSAVITGC 313 L+ F DF+ + G Sbjct: 121 LKIFNRHDFAKNLVGL 136 >gi|255655263|ref|ZP_05400672.1| signal recognition particle protein [Clostridium difficile QCD-23m63] Length = 452 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 111/208 (53%), Gaps = 6/208 (2%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P ++++VG+ G GKTT GKL G K +L A D +R AAI QL++ ++ Sbjct: 98 SKPPTILMMVGLQGAGKTTTAGKLGGYFKKQGKKPLLVACDIYRPAAIKQLQVVGEKLDI 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + +A A D++IIDTAGRLH + +LM + + +K Sbjct: 158 PVFNMGDKENPVNIAKAGLSHAIKNANDLVIIDTAGRLHIDEVLMDELKSIKSEVK---- 213 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 PH +L V+D+ TGQ+A+ E F+ G G+++TK+DG RGG + I + P+ Sbjct: 214 --PHEILLVVDSMTGQDAVNVAESFNEALGVDGVVLTKLDGDTRGGAALSIRAVTQKPIK 271 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++D+EPF ++ I G D Sbjct: 272 FMGMGEKLDDIEPFHPDRMASRILGMGD 299 >gi|153827348|ref|ZP_01980015.1| signal recognition particle protein [Vibrio cholerae MZO-2] gi|153830759|ref|ZP_01983426.1| signal recognition particle protein [Vibrio cholerae 623-39] gi|183179684|ref|ZP_02957895.1| signal recognition particle protein [Vibrio cholerae MZO-3] gi|229512829|ref|ZP_04402296.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae TMA 21] gi|229520856|ref|ZP_04410278.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae TM 11079-80] gi|229525220|ref|ZP_04414625.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae bv. albensis VL426] gi|229530373|ref|ZP_04419761.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae 12129(1)] gi|254292068|ref|ZP_04962844.1| signal recognition particle protein [Vibrio cholerae AM-19226] gi|297580693|ref|ZP_06942619.1| signal recognition particle protein [Vibrio cholerae RC385] gi|148873768|gb|EDL71903.1| signal recognition particle protein [Vibrio cholerae 623-39] gi|149738743|gb|EDM53085.1| signal recognition particle protein [Vibrio cholerae MZO-2] gi|150422016|gb|EDN13987.1| signal recognition particle protein [Vibrio cholerae AM-19226] gi|183013095|gb|EDT88395.1| signal recognition particle protein [Vibrio cholerae MZO-3] gi|229332146|gb|EEN97634.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae 12129(1)] gi|229338801|gb|EEO03818.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae bv. albensis VL426] gi|229342089|gb|EEO07085.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae TM 11079-80] gi|229350078|gb|EEO15031.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae TMA 21] gi|297535109|gb|EFH73944.1| signal recognition particle protein [Vibrio cholerae RC385] Length = 461 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 99/307 (32%), Positives = 154/307 (50%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E I + L ++ N + P VIL+ G+ G GKTT +G Sbjct: 60 VGVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KLSK + + K V++ + D +R AAI QL+ A+ DF S +A A Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSSPDQKPIDIANAAIDH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DVLI+DTAGRL + +MA I + + + P L V+DA TGQ+A Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+I+TK+DG ARGG + + P+ F+GVGE + LEPF ++ Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|5912319|emb|CAB56102.1| cell division protein [Rickettsia sibirica] Length = 136 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 62/136 (45%), Positives = 93/136 (68%), Gaps = 2/136 (1%) Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237 A++AY +++ + +D+L IDTAGRLHN LM + K+++V+K+LD +AP HSVL V+ Sbjct: 2 ASVAYHGMEESIKQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVL-VI 60 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA TGQN QVE F+ TGLI+TK+DG+A+ G ++ +V +P+YF+G+GE I D Sbjct: 61 DAITGQNTYNQVEHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIED 120 Query: 298 LEPFVAKDFSAVITGC 313 L+ F DF+ + G Sbjct: 121 LKIFNQHDFARNLVGL 136 >gi|56698078|ref|YP_168449.1| signal recognition particle protein [Ruegeria pomeroyi DSS-3] gi|56679815|gb|AAV96481.1| signal recognition particle protein [Ruegeria pomeroyi DSS-3] Length = 510 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/269 (31%), Positives = 139/269 (51%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA+ V+ + K + V+ Q+V+ V + + +L P Sbjct: 38 LLEADVSLPVARDFVKAVQDKATGQAVTKSVTPGQQVVKIVHDTLVDVLRGAEDPGKLKI 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P IL+VG+ G GKTT KL+K++ + G KV++A+ D +R AA+DQL + + Sbjct: 98 DNPPAPILMVGLQGGGKTTTTAKLAKRLKEREGKKVLMASLDVYRPAAMDQLAVLGAQIG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G +A A +QA DV ++DTAGRLH + +LM + + V+ Sbjct: 158 VDTLPIVPGQKPVDIAKRAKQQAMMGGYDVYMLDTAGRLHIDQVLMQEVEDVRNVV---- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+D TGQ A+ E F A G +G+++T+MDG RGG + + P+ Sbjct: 214 --TPRETLLVVDGLTGQVAVEVAEEFDAKIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ LE F + + I G D Sbjct: 272 RFVGLGEKMDALETFEPERIAGRILGMGD 300 >gi|148906612|gb|ABR16458.1| unknown [Picea sitchensis] Length = 573 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 106/347 (30%), Positives = 164/347 (47%), Gaps = 54/347 (15%) Query: 17 LTKGFASTSLKLKEGITDIIS--------SRRLDDG---VREEL---------------- 49 L+ GF+S+SL KE ++I +RR+ G VR E+ Sbjct: 43 LSVGFSSSSLFQKEKCLELIHCQTKWGLVNRRIRHGSDLVRAEMFGQLTTSLEAAWSKLS 102 Query: 50 -EDLLIRS-------DIGVAVAQKIVEELLTKRYAKDVSVQ----------RVLYDVSEL 91 +D+L R DI A+ + V + +R+ K V+ Q R + ++ Sbjct: 103 KQDVLTRENMAEPMRDIRRALLEADVSLPVVRRFVKVVTEQAIGVGVVPGVRSDQQLVKV 162 Query: 92 IHKMLMPL--SKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 ++ L+ L + DF+ P VIL+ G+ GVGKTT KL+ + G ML A D Sbjct: 163 VNDELVKLMGGEVAELDFAKTGPTVILMAGLQGVGKTTACAKLALYLKKKGKNCMLVAAD 222 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 +R AAIDQL I + + +A + ++A+ K +DV+I+DTAGRL + Sbjct: 223 VYRPAAIDQLVILGKQVEVPVYEAGTKVTPMEIAKQGLEEAKKKDMDVVIVDTAGRLQVD 282 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 +M + ++ + + P VL V+DA TGQ A V F+ G TG I+TK+DG Sbjct: 283 KSMMDELKQVKQAMN------PTEVLLVVDAMTGQEAAALVAAFNLEIGITGAILTKLDG 336 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+G GE + DLEPF ++ I G D Sbjct: 337 DSRGGAALSVREVSGKPIKFVGQGERMEDLEPFYPDRMASRILGMGD 383 >gi|118370390|ref|XP_001018396.1| signal recognition particle 54 kDa protein 1, SRP54 [Tetrahymena thermophila] gi|89300163|gb|EAR98151.1| signal recognition particle 54 kDa protein 1, SRP54 [Tetrahymena thermophila SB210] Length = 518 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/275 (30%), Positives = 139/275 (50%), Gaps = 11/275 (4%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD---VSVQRVLYD-VSELIHKMLMPLS 100 V +E++ L++SD+ V K+ ++ K +D V++++++ V + + +ML Sbjct: 31 VLKEIQLALLQSDVNVKYVAKLKSNIIMKFKMEDSQGVNLKKMIQQAVVQELTQMLDSNK 90 Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 KPF +P+V++ VG+ G GKTT K + G + L DTFR+ A DQLK Sbjct: 91 KPF-VPKRGKPNVVMFVGLQGAGKTTTCTKYAYHWQKKGWRTALICADTFRAGAFDQLKQ 149 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A + F S +D A+A E K + + +++I+DT+GR S L +M + Sbjct: 150 NATKVRVPFYGSYSETDPVAIAEEGVKHFKKENYEMIIVDTSGRHKQESEL---FDEMKQ 206 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 V ++ P + V+D + GQ Q + F +I+TK+DG A+GGG + V Sbjct: 207 VQAAVN---PDECIFVMDGSIGQACYDQAQAFRNAVNVGSVIITKLDGHAKGGGALSAVA 263 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + P+ F+G GE DLEPF + F + G D Sbjct: 264 ATESPIIFIGTGEHFEDLEPFNPESFVKRLLGLGD 298 >gi|326469041|gb|EGD93050.1| signal recognition particle 54K protein [Trichophyton tonsurans CBS 112818] Length = 534 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/301 (28%), Positives = 149/301 (49%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ ++D+ S +D D + +E+ L+ +D+ V + Q++ + + + Sbjct: 9 RINAAVSDLTRSNAVDEKALDAMIKEICAALLSADVNVRLVQQLRKSIKAAVQLPSIPPA 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D +L+ ++ P ++PF + +VI++VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--QLV-ALVDPHAEPFKPK-KGKSNVIMMVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G K L DTFR+ A DQLK A + + S +D ++ E + + ++ Sbjct: 125 YQTKGFKAALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPVVVSSEGVAKFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D++I+DT+GR L + ++ +K P + VLD+T GQ A Q F + Sbjct: 185 DIIIVDTSGRHRQEEDLFTEMTQIQSAIK------PDQTIMVLDSTIGQAAETQSAAFKS 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V + P+ FLG GE + DLE F + F + G Sbjct: 239 AADFGAIIITKTDGHAAGGGAISAVAATRTPIIFLGTGEHMLDLERFAPRPFVQKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|296451248|ref|ZP_06892988.1| signal recognition particle protein [Clostridium difficile NAP08] gi|296880400|ref|ZP_06904363.1| signal recognition particle protein [Clostridium difficile NAP07] gi|296259854|gb|EFH06709.1| signal recognition particle protein [Clostridium difficile NAP08] gi|296428641|gb|EFH14525.1| signal recognition particle protein [Clostridium difficile NAP07] Length = 450 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 111/208 (53%), Gaps = 6/208 (2%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P ++++VG+ G GKTT GKL G K +L A D +R AAI QL++ ++ Sbjct: 98 SKPPTILMMVGLQGAGKTTTAGKLGGYFKKQGKKPLLVACDIYRPAAIKQLQVVGEKLDI 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + +A A D++IIDTAGRLH + +LM + + +K Sbjct: 158 PVFNMGDKENPVNIAKAGLSHAIKNANDLVIIDTAGRLHIDEVLMDELKSIKSEVK---- 213 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 PH +L V+D+ TGQ+A+ E F+ G G+++TK+DG RGG + I + P+ Sbjct: 214 --PHEILLVVDSMTGQDAVNVAESFNEALGVDGVVLTKLDGDTRGGAALSIRAVTQKPIK 271 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++D+EPF ++ I G D Sbjct: 272 FMGMGEKLDDIEPFHPDRMASRILGMGD 299 >gi|22299516|ref|NP_682763.1| signal recognition particle protein [Thermosynechococcus elongatus BP-1] gi|22295699|dbj|BAC09525.1| signal recognition particle protein [Thermosynechococcus elongatus BP-1] Length = 469 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/293 (30%), Positives = 145/293 (49%), Gaps = 25/293 (8%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85 D I+ + + +RE + L+ +D+ + VA+ +E + + +V +++ Sbjct: 20 DKITENNIQEALRE-VRRALLEADVNLQVAKDFIENVRQRAIGAEVIAGVRPDQQFIKIV 78 Query: 86 YD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 YD + E++ + PL+ P +IL+ G+ G GKTT KL+ + G +L Sbjct: 79 YDALVEVMGESHSPLAH-----VEPPPTIILMAGLQGTGKTTATAKLALHLRKEGRSTLL 133 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTA 202 A D +R AAIDQL + E+G++ + +A + +A+ VD +IIDTA Sbjct: 134 VATDVYRPAAIDQLMTLGKQIGVPVF--EMGTEVSPVEIARQGVAKAKELGVDTVIIDTA 191 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRL ++ +MA + + ++ PH L V+DA TGQ A FH G TG I Sbjct: 192 GRLQIDAEMMAELAAIKEGVQ------PHETLLVVDAMTGQEAANLTRAFHEQVGITGAI 245 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +TK+DG RGG + + P+ F+GVGE + L+PF ++ I G D Sbjct: 246 LTKLDGDTRGGAALSVRQVSGQPIKFIGVGEKVEALQPFYPDRLASRILGMGD 298 >gi|218961871|ref|YP_001741646.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Candidatus Cloacamonas acidaminovorans] gi|167730528|emb|CAO81440.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Candidatus Cloacamonas acidaminovorans] Length = 446 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 93/279 (33%), Positives = 147/279 (52%), Gaps = 18/279 (6%) Query: 44 GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL---YDVSELIHKMLMPL- 99 G+RE + L+ +D+ + + + E+ ++ A V V + L V +++++ L+ L Sbjct: 30 GLRE-VRMALLEADVNFRIVKNFIAEV--EKRALGVEVMKSLTPGQQVVKIVYEQLVNLM 86 Query: 100 -SKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ F + F++R +++VG+ G GKTT KL+ G+K ML A D +R AA+DQ Sbjct: 87 DTEGFQFKVFNNRLTKVMLVGLQGSGKTTACAKLAAFYRKKGIKPMLVACDVYRPAAVDQ 146 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 LKI + V SE + +A A A + V++LI DTAGRLH + +M + Sbjct: 147 LKILGKQIGIP-VVSEDTKNVLKIADSALSMADKEMVNLLIFDTAGRLHIDEPMMEEVA- 204 Query: 218 MIRVLKRLDPH-APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 RL H P + V DATTGQ+A+ + F+ +I+TK+DG ARGG + Sbjct: 205 ------RLKTHIKPDYIFFVADATTGQDAVTIAKEFYDKLAFDAVILTKLDGDARGGAAL 258 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I PV F+G+GE I+DLE F ++ I G D Sbjct: 259 SIKAVTGKPVAFVGIGEKISDLEIFYPDRMASRILGMGD 297 >gi|254227080|ref|ZP_04920636.1| signal recognition particle protein [Vibrio cholerae V51] gi|125620406|gb|EAZ48784.1| signal recognition particle protein [Vibrio cholerae V51] Length = 372 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 99/307 (32%), Positives = 154/307 (50%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E I + L ++ N + P VIL+ G+ G GKTT +G Sbjct: 60 VGVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KLSK + + K V++ + D +R AAI QL+ A+ DF S +A A Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DVLI+DTAGRL + +MA I + + + P L V+DA TGQ+A Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+I+TK+DG ARGG + + P+ F+GVGE + LEPF ++ Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|113476149|ref|YP_722210.1| signal recognition particle subunit FFH/SRP54 (srp54) [Trichodesmium erythraeum IMS101] gi|110167197|gb|ABG51737.1| signal recognition particle subunit FFH/SRP54 (srp54) [Trichodesmium erythraeum IMS101] Length = 483 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 85/279 (30%), Positives = 142/279 (50%), Gaps = 24/279 (8%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD-VSELIHKMLMP 98 E+ L+ +D+ + V + + E+ +K DV ++++D +++++ + P Sbjct: 33 EVRRALLEADVNLQVVKGFIAEVSSKAKGADVLTGVRPDQQFIKIVHDELAQIMGESNAP 92 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 L+K P ++L+ G+ G GKTT KL+ + +L A D +R AAIDQL Sbjct: 93 LAKA-----DQPPTIVLMAGLQGTGKTTASAKLALHLRKENRSALLVATDVYRPAAIDQL 147 Query: 159 KIWADRTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 + D E+G+D +A + ++A+A +D++IIDTAGRL + +MA + Sbjct: 148 VTLGKQI--DVPVFELGTDIDPVEIAQKGLEKAKADGIDIVIIDTAGRLQIDQDMMAELA 205 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 ++ +K P L V+DA TGQ A F+ G TG I+TKMDG RGG + Sbjct: 206 RIKAAVK------PQETLLVVDAMTGQEAATLTRTFNDQIGITGAILTKMDGDTRGGAAL 259 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + P+ F+GVGE + L+PF + ++ I G D Sbjct: 260 SVRRISGQPIKFIGVGEKVEALQPFYPERMASRILGMGD 298 >gi|255100269|ref|ZP_05329246.1| signal recognition particle protein [Clostridium difficile QCD-63q42] gi|255306209|ref|ZP_05350381.1| signal recognition particle protein [Clostridium difficile ATCC 43255] Length = 450 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 111/208 (53%), Gaps = 6/208 (2%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P ++++VG+ G GKTT GKL G K +L A D +R AAI QL++ ++ Sbjct: 98 SKPPTILMMVGLQGAGKTTTAGKLGGYFKKQGKKPLLVACDIYRPAAIKQLQVVGEKLDI 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + +A A D++IIDTAGRLH + +LM + + +K Sbjct: 158 PVFNMGDKENPVNIAKAGLSHAIKNANDLVIIDTAGRLHIDEVLMDELKSIKSEVK---- 213 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 PH +L V+D+ TGQ+A+ E F+ G G+++TK+DG RGG + I + P+ Sbjct: 214 --PHEILLVVDSMTGQDAVNVAESFNEALGVDGVVLTKLDGDTRGGAALSIRAVTQKPIK 271 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++D+EPF ++ I G D Sbjct: 272 FMGMGEKLDDIEPFHPDRMASRILGMGD 299 >gi|146304520|ref|YP_001191836.1| signal recognition particle subunit FFH/SRP54 (srp54) [Metallosphaera sedula DSM 5348] gi|172046932|sp|A4YHL0|SRP54_METS5 RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|145702770|gb|ABP95912.1| signal recognition particle subunit FFH/SRP54 (srp54) [Metallosphaera sedula DSM 5348] Length = 446 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 100/316 (31%), Positives = 157/316 (49%), Gaps = 42/316 (13%) Query: 14 IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV----AVAQKIVEE 69 +RK G S + ++E I DI + LI SD+ V ++ KI E Sbjct: 9 VRKFLGGNTSYEVAVEEFIKDI--------------QKALISSDVQVKLVFSLTNKIKER 54 Query: 70 LLTKRYAKDVSVQ----RVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 L + ++ + +++YD +S L P P P VI++VGV G GK Sbjct: 55 LKKETPPSNLERREWFIKIVYDELSALFGGDKEPEVNP-----KSIPWVIMLVGVQGTGK 109 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAY 183 TT GKL+ G KV L D +R AA++QL+ + + V E GS DA +A Sbjct: 110 TTTAGKLAYFYKKRGYKVALVGADVYRPAALEQLQQIGKQINVP-VYGEPGSQDAVGIAK 168 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL----DPHAPHSVLQVLDA 239 ++ +++ +++I+DTAGR G G+ +++L+ + + P+ V+ V+DA Sbjct: 169 RGVEKFLSERYELVIVDTAGR--------HGYGEEVKLLEEMKDIYEKIKPNEVILVIDA 220 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 + GQ A + FH + +I+TKMDGTA+GGG + V P+ F+GVGE I++LE Sbjct: 221 SLGQKAYDLAKRFHEASNVGSIIITKMDGTAKGGGALSAVAATGAPIKFIGVGEKIDELE 280 Query: 300 PFVAKDFSAVITGCLD 315 F + F A I G D Sbjct: 281 VFNPRRFVARILGMGD 296 >gi|255262300|ref|ZP_05341642.1| signal recognition particle protein [Thalassiobium sp. R2A62] gi|255104635|gb|EET47309.1| signal recognition particle protein [Thalassiobium sp. R2A62] Length = 499 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 98/309 (31%), Positives = 159/309 (51%), Gaps = 24/309 (7%) Query: 21 FASTSLKLKEGITDIISSRRL--DDGVREELEDL---LIRSDIGVAVAQKIVE------- 68 F S S +L G+ D ++ + +D V+ L ++ L+ +D+ + VA+ V+ Sbjct: 2 FGSLSDRL-SGVFDKLTKQGALSEDDVKTALREVRVALLEADVSLPVARDFVKAVQDKAT 60 Query: 69 -ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 + +TK V ++++D ELIH +L + P P IL+VG+ G GKTT Sbjct: 61 GQAVTKSVTPGQQVVKIVHD--ELIH-VLTGVGDPSALKIDSPPAPILMVGLQGSGKTTT 117 Query: 128 IGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL+K++ D G +V++A+ D R AA++QL+I + D + G D A+A A Sbjct: 118 TAKLAKRLKDREGKRVLMASLDVNRPAAMEQLQILGAQIGVDTLPIVKGEDPVAIAKRAK 177 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 QA DV ++DTAGRLH + L+A +R D P L V+D TGQ+A+ Sbjct: 178 TQASLGGYDVYMLDTAGRLHIDQELIAQ-ASAVR-----DVANPRETLLVVDGLTGQDAV 231 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 E F G +G+++T+MDG RGG + + P+ F+G+GE ++ +E F + Sbjct: 232 NVAEEFDNNIGVSGVVLTRMDGDGRGGAALSMRAVTGKPIKFVGLGEKMDAIEEFHPERI 291 Query: 307 SAVITGCLD 315 + I G D Sbjct: 292 AGRILGMGD 300 >gi|239994644|ref|ZP_04715168.1| signal recognition particle protein [Alteromonas macleodii ATCC 27126] Length = 479 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 91/305 (29%), Positives = 160/305 (52%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + ++ RL +D ++E L ++ L+ +D+ + V + V ++ + Sbjct: 2 FENLSERLGQTLRNVSGKGRLTEDNIKETLREVRMALLEADVALPVVKAFVAQVKERAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V + ++ ++ N + P V+L+ G+ G GKTT +GKL Sbjct: 62 TEVTKSLKPGQVFIKIVQSELESVMGEANEKLNL-ATQPPAVVLMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K +++ KVM+ + D +R AAI QL+ A + F S I + +A +A+ Sbjct: 121 AKYLTEREKKKVMVVSADVYRPAAIKQLETLAGEVNVAFHPSTILQKPIDIVNDAIVEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DVL++DTAGRLH ++ +M I ++ +K P L V+DA TGQ+A + Sbjct: 181 KNFFDVLLVDTAGRLHVDNDMMDEIKELHAAVK------PIETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK DG ARGG + + P+ F+G+GE ++ LEPF + ++ I Sbjct: 235 AFNDALPLTGVILTKADGDARGGAALSVRHITGKPIKFIGMGEKVDALEPFHPERIASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|193084084|gb|ACF09754.1| signal recognition particle subunit Ffh SRP54 [uncultured marine group III euryarchaeote AD1000-40-D7] Length = 444 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/205 (36%), Positives = 111/205 (54%), Gaps = 8/205 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P I++VG+ G GKTT GKL K GL + L A D R AA DQL ++ Sbjct: 97 PQKIMLVGLYGQGKTTTTGKLGKHFKKKGLNLGLIAADVHRPAAFDQLSQIGEQIQVPVF 156 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 S DAA + E K+ ++DV+I+DTAGR + L++ + + ++++ P Sbjct: 157 GSSDNKDAAKVVKEGLKEF--TELDVVIVDTAGRHALDEELISEMKSISKIVQ------P 208 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 +L V+DAT GQ A Q + FH G +G+I+TK+DG+A+GGG + V K P+ F+G Sbjct: 209 DEILLVMDATVGQQAGPQAQAFHDAVGVSGVILTKLDGSAKGGGALSAVAVTKAPIVFVG 268 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 GE ++ LE F + + G D Sbjct: 269 TGESLDSLETLDPDRFISRLLGMGD 293 >gi|302185524|ref|ZP_07262197.1| Signal recognition particle protein [Pseudomonas syringae pv. syringae 642] Length = 458 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 153/306 (50%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNV--KERA 59 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N D P VIL+ G+ G GKTT GK Sbjct: 60 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL+ A+ F S+I +A A K+A Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIAQAAIKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K +DV+I+DTAGRLH + +M I + +K P L V+DA TGQ+A Sbjct: 180 KLKFIDVVIVDTAGRLHVDVEMMGEIQALHAAVK------PAETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK+DG ARGG + + P+ F+G+GE LEPF ++ Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|261365904|ref|ZP_05978787.1| signal recognition particle protein [Neisseria mucosa ATCC 25996] gi|288565515|gb|EFC87075.1| signal recognition particle protein [Neisseria mucosa ATCC 25996] Length = 456 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 86/283 (30%), Positives = 151/283 (53%), Gaps = 16/283 (5%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKML 96 +D ++E L ++ L+ +D+ + V ++ V + K ++V+ + D + ++++ L Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVT-GSLTPDQAFIGVVNQAL 82 Query: 97 MPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 + L N + P V+L+ G+ G GKTT +GKL++ + ++ KV++ + D +R Sbjct: 83 IELMGKENSSLDLAAVPPAVVLMAGLQGAGKTTTVGKLARLLKNEQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGIDFFPSDANQKPVEIATAAIDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 I + +K P L V+DA GQ+A+ + F+ TG+I+TKMDG +RG Sbjct: 203 NEIKALHAAVK------PVETLFVVDAMLGQDAVNTAQAFNEALPLTGVILTKMDGDSRG 256 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + + P+ F+G+GE I LEPF ++ I G D Sbjct: 257 GAALSVRHVTGKPIKFIGIGEKITGLEPFYPDRIASRILGMGD 299 >gi|294507645|ref|YP_003571703.1| signal recognition particle protein [Salinibacter ruber M8] gi|294343973|emb|CBH24751.1| signal recognition particle protein [Salinibacter ruber M8] Length = 461 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/209 (35%), Positives = 110/209 (52%), Gaps = 10/209 (4%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VILV G+ G GKTT KL++ G +LAA D +R AA+DQLK AD+ +A Sbjct: 100 PTVILVAGLQGSGKTTFCAKLARHFRKEGHAPLLAASDVYRPAAVDQLKTLADQVNAPVY 159 Query: 171 C----SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 EI DA +A EA +AQ D++IIDTAGR+H + +M + + + Sbjct: 160 SIEDDGEIVEDAVRVANEAVAEAQNTARDIVIIDTAGRMHIDEAMMQEVEDIKTTV---- 215 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 AP+ L V+D+ TGQ+A+ + F+ G++++K+DG RGG + I P+ Sbjct: 216 --APNETLFVVDSMTGQDAVNTAKEFNERIDYDGVVLSKLDGDTRGGAALSIRTVVNKPI 273 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F GE ++ L PF + I G D Sbjct: 274 KFASTGEKLDALTPFYPDRMAQRILGMGD 302 >gi|195952674|ref|YP_002120964.1| signal recognition particle protein [Hydrogenobaculum sp. Y04AAS1] gi|195932286|gb|ACG56986.1| signal recognition particle protein [Hydrogenobaculum sp. Y04AAS1] Length = 435 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 87/281 (30%), Positives = 146/281 (51%), Gaps = 10/281 (3%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95 ++ + ++D +R+ + L+ +D+ VA+ ++ L + +++++ D+ +I + Sbjct: 22 LNEKLVNDTLRD-IRAALLEADVDYDVAKDFIKRLRERIFSEEIKTHLSPTDM--IIMSV 78 Query: 96 LMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 L K + S V++ VG+ G GKTT IGKL+ M G VM + D R AA Sbjct: 79 YDELVKTLGGNASPLEEGVVMFVGLQGTGKTTTIGKLANLMKKNGRSVMTVSTDVRRPAA 138 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 + QLK ++ +++ + +A EAF+ ++KK D L +DTAGRLH ++ LM Sbjct: 139 MLQLKRVSELAGVEYLEFSPDKNPVDIAKEAFEAFKSKKYDYLFLDTAGRLHIDNELMEE 198 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + + +K P V+ V D+ GQ AL + F+ V G TG I+TKMDG RGG Sbjct: 199 LRAIKEAVK------PSEVIYVADSMQGQEALSVAKTFNEVVGLTGAILTKMDGDTRGGV 252 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I IP+ ++GVGE + D++ F + I G D Sbjct: 253 ALSIKDAIGIPIKYIGVGEKLEDIDQFYPDRIAQRILGLGD 293 >gi|313885163|ref|ZP_07818915.1| signal recognition particle protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619854|gb|EFR31291.1| signal recognition particle protein [Eremococcus coleocola ACS-139-V-Col8] Length = 489 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/236 (34%), Positives = 122/236 (51%), Gaps = 9/236 (3%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD--AG 139 Q+V+ V E + ++ +P N S P V+++VG+ G GKTT +GKL+K +++ Sbjct: 73 QQVVKIVDEELTDLMGGEREPLNM-ASQPPTVMMMVGLQGAGKTTTVGKLAKYITEELGK 131 Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199 K +L AGD +R AA+DQLK + + +A A QA+ V+II Sbjct: 132 KKPLLVAGDVYRPAAVDQLKTIGQQLGFEVYDEGTQVSPVEIAKRALDQAKLNGNQVVII 191 Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 DTAGRLH N LM + + + P +L +DA TGQ+A+ + F+ T Sbjct: 192 DTAGRLHVNEELMDELRNIKAAVN------PDEILLTVDAMTGQDAVNVADAFNEALDIT 245 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G+++TK+DG RGG + I P+ F G GE ++ LEPF S+ I G D Sbjct: 246 GVVITKLDGDTRGGAALSIRSIIDKPIKFTGQGEKLDALEPFYPDRMSSRILGMGD 301 >gi|312962854|ref|ZP_07777341.1| signal recognition particle protein [Pseudomonas fluorescens WH6] gi|311282881|gb|EFQ61475.1| signal recognition particle protein [Pseudomonas fluorescens WH6] Length = 458 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 95/309 (30%), Positives = 155/309 (50%), Gaps = 25/309 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KERA 59 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N D + P V+L+ G+ G GKTT GK Sbjct: 60 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLNLSAVPPAVVLMAGLQGAGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL++ A F S++ +A A K+A Sbjct: 120 LARFLKERKKKSVMVVSADVYRPAAIKQLEMLAGEVGVTFFPSDLSQKPVDIANAAIKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246 + K +DV+I+DTAGRLH + +M I + HA P L V+DA TGQ+A Sbjct: 180 RLKFIDVVIVDTAGRLHIDEEMMGEIKAL---------HAAINPVETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F TG+I+TK+DG ARGG + + P+ F+G+GE LEPF + Sbjct: 231 NTAKAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPERI 290 Query: 307 SAVITGCLD 315 ++ I G D Sbjct: 291 ASRILGMGD 299 >gi|121591120|ref|ZP_01678429.1| signal recognition particle protein [Vibrio cholerae 2740-80] gi|147674906|ref|YP_001216059.1| signal recognition particle protein [Vibrio cholerae O395] gi|153820246|ref|ZP_01972913.1| signal recognition particle protein [Vibrio cholerae NCTC 8457] gi|227080743|ref|YP_002809294.1| signal recognition particle protein [Vibrio cholerae M66-2] gi|229507171|ref|ZP_04396677.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae BX 330286] gi|262169869|ref|ZP_06037559.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae RC27] gi|262401736|ref|ZP_06078302.1| signal recognition particle subunit Ffh SRP54 [Vibrio sp. RC586] gi|121547038|gb|EAX57179.1| signal recognition particle protein [Vibrio cholerae 2740-80] gi|126509208|gb|EAZ71802.1| signal recognition particle protein [Vibrio cholerae NCTC 8457] gi|146316789|gb|ABQ21328.1| signal recognition particle protein [Vibrio cholerae O395] gi|227008631|gb|ACP04843.1| signal recognition particle protein [Vibrio cholerae M66-2] gi|227012386|gb|ACP08596.1| signal recognition particle protein [Vibrio cholerae O395] gi|229355916|gb|EEO20836.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae BX 330286] gi|262021603|gb|EEY40314.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae RC27] gi|262352153|gb|EEZ01283.1| signal recognition particle subunit Ffh SRP54 [Vibrio sp. RC586] Length = 461 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 99/307 (32%), Positives = 154/307 (50%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E I + L ++ N + P VIL+ G+ G GKTT +G Sbjct: 60 VGVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KLSK + + K V++ + D +R AAI QL+ A+ DF S +A A Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DVLI+DTAGRL + +MA I + + + P L V+DA TGQ+A Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+I+TK+DG ARGG + + P+ F+GVGE + LEPF ++ Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|260495487|ref|ZP_05815613.1| signal recognition particle protein [Fusobacterium sp. 3_1_33] gi|260197024|gb|EEW94545.1| signal recognition particle protein [Fusobacterium sp. 3_1_33] Length = 443 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 6/207 (2%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P +I++ G+ G GKTT KL+K + K++L D +R AAI QL++ + D Sbjct: 98 RNPTIIMLAGLQGAGKTTFAAKLAKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVD 157 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 E D +A A ++A+ +I+DTAGRLH + LM + ++ + +K Sbjct: 158 VYSEENSKDVVGIATRAIEKAKEINATYMIVDTAGRLHVDETLMEELKELKKAIK----- 212 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P +L V+DA GQ+A+ E F+ G+I+TK+DG RGG + I P+ F Sbjct: 213 -PQEILLVVDAMIGQDAVNLAESFNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKF 271 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +GVGE +ND+E F + I G D Sbjct: 272 IGVGEKLNDIEIFHPDRLVSRILGMGD 298 >gi|83814688|ref|YP_445750.1| signal recognition particle protein [Salinibacter ruber DSM 13855] gi|83756082|gb|ABC44195.1| signal recognition particle protein [Salinibacter ruber DSM 13855] Length = 461 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/209 (35%), Positives = 110/209 (52%), Gaps = 10/209 (4%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VILV G+ G GKTT KL++ G +LAA D +R AA+DQLK AD+ +A Sbjct: 100 PTVILVAGLQGSGKTTFCAKLARHFRKEGHAPLLAASDVYRPAAVDQLKTLADQVNAPVY 159 Query: 171 C----SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 EI DA +A EA +AQ D++IIDTAGR+H + +M + + + Sbjct: 160 SIEDDGEIVEDAVRVANEAVTEAQNTARDIVIIDTAGRMHIDEAMMQEVEDIKTTV---- 215 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 AP+ L V+D+ TGQ+A+ + F+ G++++K+DG RGG + I P+ Sbjct: 216 --APNETLFVVDSMTGQDAVNTAKEFNERIDYDGVVLSKLDGDTRGGAALSIRTVVNKPI 273 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F GE ++ L PF + I G D Sbjct: 274 KFASTGEKLDALTPFYPDRMAQRILGMGD 302 >gi|66044529|ref|YP_234370.1| Signal recognition particle protein [Pseudomonas syringae pv. syringae B728a] gi|63255236|gb|AAY36332.1| Signal recognition particle protein [Pseudomonas syringae pv. syringae B728a] gi|330969028|gb|EGH69094.1| signal recognition particle protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 458 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 153/306 (50%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNV--KERA 59 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N D P VIL+ G+ G GKTT GK Sbjct: 60 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL+ A+ F S+I +A A K+A Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIAQAAIKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K +DV+I+DTAGRLH + +M I + +K P L V+DA TGQ+A Sbjct: 180 RLKFIDVVIVDTAGRLHVDVEMMGEIQALHAAVK------PAETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK+DG ARGG + + P+ F+G+GE LEPF ++ Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|303244260|ref|ZP_07330597.1| GTP-binding signal recognition particle SRP54 G- domain [Methanothermococcus okinawensis IH1] gi|302485387|gb|EFL48314.1| GTP-binding signal recognition particle SRP54 G- domain [Methanothermococcus okinawensis IH1] Length = 456 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 89/284 (31%), Positives = 147/284 (51%), Gaps = 16/284 (5%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93 ++L V ++++ LI++D+ V + K+ +E+ + +D+ + ++ V E + Sbjct: 30 KKLIKEVIKDIQKALIQADVNVKLVFKMSKEIEKRAINEDIPKGLSKKEHIIKIVYEELV 89 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 K+L + + + ++IL+VG+ G GKTT KL++ + GLK L A D +R A Sbjct: 90 KLLGEEGQKLELN-PKKQNIILLVGIQGSGKTTSAAKLARYIQKRGLKPGLIAADIYRPA 148 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAA-ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 A QLK A++ E + +A E K KK+DVLIIDTAGR + L+ Sbjct: 149 AYQQLKQLAEKIHVPLYGDETKTKTPMEIAKEGIKNL--KKMDVLIIDTAGRHKEETGLL 206 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM-TKMDGTAR 271 + ++ V+ P ++ V+D T GQ A Q + F G G I+ TK+DG+A+ Sbjct: 207 EEMKQIKDVVN------PDEIILVIDGTLGQQAKNQAKAFKDAVGEIGSILVTKLDGSAK 260 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 GGG + V P+ F+G GE ++DLEPF F + + G D Sbjct: 261 GGGALSAVAEINAPIKFIGTGENVDDLEPFDPNKFISRLLGMGD 304 >gi|227892628|ref|ZP_04010433.1| Sec family type I general secretory pathway protein signal recognition particle protein [Lactobacillus ultunensis DSM 16047] gi|227865560|gb|EEJ72981.1| Sec family type I general secretory pathway protein signal recognition particle protein [Lactobacillus ultunensis DSM 16047] Length = 476 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 137/269 (50%), Gaps = 13/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + ++ + + K+V Q+V+ V+E + KM+ + P N Sbjct: 39 LLEADVNFKVVKDFIKTIKKEALGKEVQESLNPGQQVIKIVNEQLTKMMGEEAVPLNKS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 H P +I++VG+ G GKTT +GKL+ + + +L AGD +R AA+DQLK ++ Sbjct: 98 KHIPTIIMMVGLQGTGKTTTVGKLAYHLQKTEKARPLLIAGDIYRPAAVDQLKQIGEQLK 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + D A + + +A K D ++IDTAGRL + LM + ++ +V + Sbjct: 158 VPVFSEDGEKDVAKIVKDGLAEADKNKNDYVLIDTAGRLEIDEPLMEELERVKKVAQ--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P ++L V+DA TGQ A + F TG+I+TK+DG RGG + I P+ Sbjct: 215 ---PDNILLVVDAMTGQAATDVAKGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE + DL+ F ++ I G D Sbjct: 272 LFTGQGEKLTDLDVFHPDRMASRILGMGD 300 >gi|282898237|ref|ZP_06306228.1| Signal recognition particle protein [Raphidiopsis brookii D9] gi|281196768|gb|EFA71673.1| Signal recognition particle protein [Raphidiopsis brookii D9] Length = 480 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 91/295 (30%), Positives = 147/295 (49%), Gaps = 29/295 (9%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85 D IS + D +RE + L+ +D+ + V + + ++ K +V +++ Sbjct: 20 DKISQTNIQDALRE-VRRALLEADVNLQVVKDFIVDVENKAQGAEVISGVRPDQQFIKIV 78 Query: 86 YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 YD EL+ M +PL++ + VIL+ G+ G GKTT KL+ + Sbjct: 79 YD--ELVQVMGEENVPLAQA-----QDKTTVILMAGLQGTGKTTATAKLALHLRKTNRSC 131 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIID 200 +L A D +R AAIDQL + D E+GSDA +A + ++A+ + ++ +I+D Sbjct: 132 LLVATDVYRPAAIDQLVTLGKQV--DVPVFEMGSDADPVEIARQGVERARNEGINTVIVD 189 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL + +MA + ++ ++ P L V+DA TGQ A FH G TG Sbjct: 190 TAGRLQIDQDMMAELSRIKSTIE------PDETLLVVDAMTGQEAANLTRTFHEQIGITG 243 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I+TKMDG +RGG + + P+ F+GVGE + L+PF ++ I G D Sbjct: 244 AILTKMDGDSRGGAALSVRQISGAPIKFIGVGEKVEALQPFYPDRMASRILGMGD 298 >gi|326771786|ref|ZP_08231071.1| signal recognition particle protein [Actinomyces viscosus C505] gi|326637919|gb|EGE38820.1| signal recognition particle protein [Actinomyces viscosus C505] Length = 561 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 130/240 (54%), Gaps = 13/240 (5%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 Q+V+ V+E + ++L ++ +W P +I++ G+ G GKTT+ GKL + + D G + Sbjct: 72 QQVVKIVNEELIEVLGGQTREIHW-ADRGPTIIMLAGLQGAGKTTLAGKLGRWLRDQGKR 130 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLI 198 V+L A D R A+ QL + A+R E G+ D A+A + A+ DV++ Sbjct: 131 VLLVASDLQRPNAVTQLSVVAERAGVHVWAPEPGNGVGDPVAVARSGVEHARTNGYDVVV 190 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +DTAGRL ++ +M + IR+ D +PH +L VLDA GQ+A+ F G Sbjct: 191 VDTAGRLGVDAEMM---DQAIRIR---DAVSPHEILFVLDAMVGQDAVNTSVAFRDGVGF 244 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 TG++++K+DG ARGG + + PV F GEG+ D E F A ++ I LD G+ Sbjct: 245 TGVVLSKLDGDARGGAALSVRGVTGAPVLFSSTGEGLTDFERFHADRMASRI---LDMGD 301 >gi|291542195|emb|CBL15305.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ruminococcus bromii L2-63] Length = 469 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 89/287 (31%), Positives = 155/287 (54%), Gaps = 18/287 (6%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 +S + + + +RE + L+ +D+ VA+ ++ + +DV Q V+ V E Sbjct: 23 LSEKDVKEAMRE-VRLALLEADVNYKVAKDFTNKVTERAVGQDVMQSLTPAQMVVKIVDE 81 Query: 91 LIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 + ++ + +F+ +P VI++ G+ G GKTT KL+K + G +LAA D Sbjct: 82 ELTSLMG--GEDARIEFASKPPTVIMMCGLQGSGKTTHTAKLAKMLKKQGRNPLLAACDV 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 +R AAIDQLK+ ++ A E+G ++ +A EA K+A+ DV+I+DTAGRLH + Sbjct: 140 YRPAAIDQLKVVGEK--AGVPVFEMGKANPVKIAKEAIKRAKDYGNDVVILDTAGRLHID 197 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM + + + ++ P+ +L V+D+ TGQ+A+ + F+ + TG+I+TK+DG Sbjct: 198 EALMDELKNIKKEVE------PNEILLVIDSMTGQDAVNVAKSFNELLDITGVILTKLDG 251 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + + P+ F G GE ++D+E F ++ I G D Sbjct: 252 DTRGGAALSVKAVTGRPIKFAGTGEKLDDIEVFHPDRMASRILGMGD 298 >gi|219121088|ref|XP_002185775.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209582624|gb|ACI65245.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 510 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 107/209 (51%), Gaps = 12/209 (5%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P+V+L VG+ G GKTT I K + G K + DTFR+ A DQLK A + F Sbjct: 113 KPNVVLFVGLQGAGKTTSIAKFAHYYQRRGWKTAMVCADTFRAGAFDQLKQNATKLRVPF 172 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLD 226 S +D +A + +Q + +V+I+DT+GR S L M I + +R Sbjct: 173 YGSYTEADPVVIAEDGVRQFVKDRYEVIIVDTSGRHKQESALFDEMQEISEAVR------ 226 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P + + V+DAT GQ Q FH +I+TK+DG A+GGG + V P+ Sbjct: 227 ---PDNTVLVMDATQGQAVYDQALAFHNAVDVGAVIVTKLDGHAKGGGALSAVAATSSPI 283 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 FLG GE +DL+PF A+ F + + G D Sbjct: 284 LFLGSGEHFDDLDPFNAQSFVSKLLGFGD 312 >gi|2772967|gb|AAC08878.1| regulatory protein PilA [Neisseria meningitidis] gi|2772969|gb|AAC08879.1| regulatory protein PilA [Neisseria meningitidis] gi|2772971|gb|AAC08880.1| regulatory protein PilA [Neisseria meningitidis] gi|2772973|gb|AAC08881.1| regulatory protein PilA [Neisseria meningitidis] gi|2772975|gb|AAC08882.1| regulatory protein PilA [Neisseria meningitidis] gi|2772977|gb|AAC08883.1| regulatory protein PilA [Neisseria meningitidis] gi|2772979|gb|AAC08884.1| regulatory protein PilA [Neisseria meningitidis] gi|2772981|gb|AAC08885.1| regulatory protein PilA [Neisseria meningitidis] gi|2772983|gb|AAC08886.1| regulatory protein PilA [Neisseria meningitidis] gi|2772985|gb|AAC08887.1| regulatory protein PilA [Neisseria meningitidis] gi|2772987|gb|AAC08888.1| regulatory protein PilA [Neisseria meningitidis] gi|2772989|gb|AAC08889.1| regulatory protein PilA [Neisseria meningitidis] gi|2772991|gb|AAC08890.1| regulatory protein PilA [Neisseria meningitidis] gi|2772993|gb|AAC08891.1| regulatory protein PilA [Neisseria meningitidis] gi|2772995|gb|AAC08892.1| regulatory protein PilA [Neisseria meningitidis] gi|2772997|gb|AAC08893.1| regulatory protein PilA [Neisseria meningitidis] gi|2772999|gb|AAC08894.1| regulatory protein PilA [Neisseria meningitidis] gi|2773001|gb|AAC08895.1| regulatory protein PilA [Neisseria meningitidis] gi|2773003|gb|AAC08896.1| regulatory protein PilA [Neisseria meningitidis] gi|2773005|gb|AAC08897.1| regulatory protein PilA [Neisseria meningitidis] gi|2773007|gb|AAC08898.1| regulatory protein PilA [Neisseria meningitidis] gi|2773009|gb|AAC08899.1| regulatory protein PilA [Neisseria meningitidis] gi|2773011|gb|AAC08900.1| regulatory protein PilA [Neisseria meningitidis] gi|2773013|gb|AAC08901.1| regulatory protein PilA [Neisseria meningitidis] gi|2773015|gb|AAC08902.1| regulatory protein PilA [Neisseria meningitidis] gi|2773017|gb|AAC08903.1| regulatory protein PilA [Neisseria meningitidis] gi|2773019|gb|AAC08904.1| regulatory protein PilA [Neisseria meningitidis] gi|2773021|gb|AAC08905.1| regulatory protein PilA [Neisseria meningitidis] gi|2773025|gb|AAC08907.1| regulatory protein PilA [Neisseria meningitidis] gi|2773027|gb|AAC08908.1| regulatory protein PilA [Neisseria meningitidis] gi|2773029|gb|AAC08909.1| regulatory protein PilA [Neisseria meningitidis] gi|2773031|gb|AAC08910.1| regulatory protein PilA [Neisseria meningitidis] gi|2773033|gb|AAC08911.1| regulatory protein PilA [Neisseria meningitidis] gi|2773035|gb|AAC08912.1| regulatory protein PilA [Neisseria meningitidis] gi|2773037|gb|AAC08913.1| regulatory protein PilA [Neisseria meningitidis] Length = 144 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 65/143 (45%), Positives = 93/143 (65%), Gaps = 1/143 (0%) Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 PL KP + P VI++ G+NG GKTT IGKL+K G V+LAAGDTFR+AA +Q Sbjct: 2 PLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQ 61 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ W +R + V S+ D+AA+ ++A + A+A+ +D+++ DTAGRL LM I K Sbjct: 62 LQAWGERNNVT-VISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKK 120 Query: 218 MIRVLKRLDPHAPHSVLQVLDAT 240 + RVL++ P APH ++ VLDA Sbjct: 121 VKRVLQKAMPDAPHEIIVVLDAN 143 >gi|262196637|ref|YP_003267846.1| signal recognition particle protein [Haliangium ochraceum DSM 14365] gi|262079984|gb|ACY15953.1| signal recognition particle protein [Haliangium ochraceum DSM 14365] Length = 568 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 95/318 (29%), Positives = 157/318 (49%), Gaps = 33/318 (10%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLT- 72 L KGF S +L G+ ++ DD + E L D+ L+ +D+ +V ++ +E + Sbjct: 5 LAKGFRSAKQRL-SGVAELD-----DDIIEEALRDVRMSLLEADVEFSVTKRFLERVREA 58 Query: 73 --------KRYAKDVSVQRVLYD------VSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118 K +++ V+ + D + + M+ P+ W P I++VG Sbjct: 59 ARGERVQLKAKSQEYGVKTITPDQAFVKICQDELSNMMGPVDTSMRW-AKKGPTGIMMVG 117 Query: 119 VNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 + G GKTT GKL++ +S+ G K +L A D +R AA+DQL+ +R +E G Sbjct: 118 LQGSGKTTTTGKLARLLSERDGKKPLLVAADVYRPAAVDQLRTLGERLGMPVFHAE-GES 176 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 + A +A DV++ DTAGRL + LM + + R K P ++ VL Sbjct: 177 PVVICKRAEARALEAGCDVILYDTAGRLTIDDQLMQELEDIDREAK------PANIFLVL 230 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA TGQ+A+ + F+ G+I+TK+DG ARGG + + P+ +LG+GEG++ Sbjct: 231 DAMTGQDAVNTADNFNKRLDLDGVILTKLDGDARGGAALSVKEVTGKPIKYLGMGEGMDK 290 Query: 298 LEPFVAKDFSAVITGCLD 315 LE F + ++ I G D Sbjct: 291 LEEFRPEGLASRILGMGD 308 >gi|163803443|ref|ZP_02197316.1| signal recognition particle protein [Vibrio sp. AND4] gi|159172744|gb|EDP57592.1| signal recognition particle protein [Vibrio sp. AND4] Length = 457 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 100/306 (32%), Positives = 152/306 (49%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D ++E L ++ L+ +D+ + V ++ V + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFVNRV--KEKA 59 Query: 77 KDVSVQRVLYDVSELIH------KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 V V + L E I +++M S + P VIL+ G+ G GKTT +GK Sbjct: 60 VGVEVSKSLTPGQEFIKIVQAELEVVMGESNEALDLAAQPPAVILMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 LSK + + K V++ + D +R AAI QL+ A DF S +A A A Sbjct: 120 LSKLLKERDKKKVLVVSADVYRPAAIKQLETLASDVGVDFFPSSPDQKPLDIANAAIDHA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVLI+DTAGRL + +M I + + P L V+DA TGQ+A Sbjct: 180 KKKFFDVLIVDTAGRLAIDEEMMGEIKDLHSAIN------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK+DG ARGG + + P+ FLGVGE + LEPF ++ Sbjct: 234 KAFGDSLPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|302879899|ref|YP_003848463.1| signal recognition particle protein [Gallionella capsiferriformans ES-2] gi|302582688|gb|ADL56699.1| signal recognition particle protein [Gallionella capsiferriformans ES-2] Length = 450 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 79/206 (38%), Positives = 112/206 (54%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT GKL+K + D K++L + D +R AAI+QL+ A + DF Sbjct: 100 PAVILMAGLQGAGKTTTCGKLAKLLHDQHKKKILLVSCDIYRPAAIEQLRTLATQLGIDF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S+I +A A A+ DVLI+DTAGRL + +MA I ++ LK Sbjct: 160 FASDISQKPQDIALAALDFARKHHHDVLIVDTAGRLAIDEAMMAEIQQLHATLK------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA TGQ+A+ F TG+++TKMDG +RGG + + P+ F+ Sbjct: 214 PIETLFVVDAMTGQDAVNTARAFGEALPLTGIVLTKMDGDSRGGAALSVRHVTGRPIKFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E N LE F + ++ I G D Sbjct: 274 GVSEKPNGLEAFHPERMASRILGMGD 299 >gi|256026652|ref|ZP_05440486.1| Signal recognition particle, subunit FFH/SRP54 [Fusobacterium sp. D11] gi|289764649|ref|ZP_06524027.1| signal recognition particle [Fusobacterium sp. D11] gi|289716204|gb|EFD80216.1| signal recognition particle [Fusobacterium sp. D11] Length = 444 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 6/207 (2%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P +I++ G+ G GKTT KL+K + K++L D +R AAI QL++ + D Sbjct: 98 RNPTIIMLAGLQGAGKTTFAAKLAKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVD 157 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 E D +A A ++A+ +I+DTAGRLH + LM + ++ + +K Sbjct: 158 VYSEENSKDVVGIATRAIEKAKEINATYMIVDTAGRLHVDETLMEELKELKKAIK----- 212 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P +L V+DA GQ+A+ E F+ G+I+TK+DG RGG + I P+ F Sbjct: 213 -PQEILLVVDAMIGQDAVNLAESFNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKF 271 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +GVGE +ND+E F + I G D Sbjct: 272 IGVGEKLNDIEIFHPDRLVSRILGMGD 298 >gi|308080100|ref|NP_001183903.1| hypothetical protein LOC100502496 [Zea mays] gi|238015356|gb|ACR38713.1| unknown [Zea mays] Length = 494 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 116/228 (50%), Gaps = 8/228 (3%) Query: 89 SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 +EL + ML P KP +P V++ VG+ G GKTT K + G K L D Sbjct: 81 TELCN-MLDP-GKPSFTPKKGKPSVVMFVGLQGSGKTTTCSKYAYYHQKKGFKPALVCAD 138 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+ A DQLK A + F S + SD +A E ++ + + D++I+DT+GR Sbjct: 139 TFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQE 198 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 + L + ++ K P V+ V+D++ GQ A Q + F +I+TKMDG Sbjct: 199 AALFEEMRQVSEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIITKMDG 252 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316 A+GGG + V K PV F+G GE I+D E F K F + + G D+ Sbjct: 253 HAKGGGALSAVAATKSPVIFIGTGEHIDDFEVFDVKPFVSRLLGMGDW 300 >gi|254304380|ref|ZP_04971738.1| IISP Type II signal recognition particle GTPase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324572|gb|EDK89822.1| IISP Type II signal recognition particle GTPase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 444 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 6/207 (2%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P +I++ G+ G GKTT KL+K + K++L D +R AAI QL++ + D Sbjct: 98 RNPTIIMLAGLQGAGKTTFAAKLAKFLKKQNEKLLLVGVDVYRPAAIKQLEVLGQQIGVD 157 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 E D +A A ++A+ +I+DTAGRLH + LM + ++ + +K Sbjct: 158 VYSEEDNKDVVGIATRAIEKAKEINATYMIVDTAGRLHVDETLMEELKELKKAIK----- 212 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P +L V+DA GQ+A+ E F+ G+I+TK+DG RGG + I P+ F Sbjct: 213 -PQEILLVVDAMIGQDAVNLAESFNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKF 271 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +GVGE +ND+E F + I G D Sbjct: 272 IGVGEKLNDIEIFHPDRLVSRILGMGD 298 >gi|320333784|ref|YP_004170495.1| signal recognition particle protein [Deinococcus maricopensis DSM 21211] gi|319755073|gb|ADV66830.1| signal recognition particle protein [Deinococcus maricopensis DSM 21211] Length = 449 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 91/274 (33%), Positives = 134/274 (48%), Gaps = 15/274 (5%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVS-ELIHKMLMPLSK 101 E+ L+ +D+ +VA+ V + K ++V + Q V+ V+ ELI + + Sbjct: 35 EIRMALLEADVNFSVAKDFVARVTEKAVGQEVMGSLNAGQMVVKIVNDELIETLGGQAKQ 94 Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 P + ++ +VG+ G GKTT GKL++ G +V+L A DT R AA DQLKI Sbjct: 95 P---TLKNEGNIFFMVGLQGAGKTTSTGKLAQYYKSKGRRVLLVAADTQRPAARDQLKIL 151 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 + + G A + Q+ D++I+DTAGRL + LM + + Sbjct: 152 GQQVGVPVLEVANGETPAETKRKLEAHLQSDYRDLIIVDTAGRLQIDEALMDQLADLKGA 211 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 L +P L V+DA TGQ AL E F + G +GLI+TKMDG ARGG + Sbjct: 212 L------SPTETLLVVDAMTGQEALNVAETFESRIGLSGLIITKMDGDARGGAALSARFV 265 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+YF GV E ++ LEPF + I G D Sbjct: 266 TGKPIYFAGVSEKLSGLEPFYPDRVAGRILGMGD 299 >gi|320532006|ref|ZP_08032899.1| signal recognition particle protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135770|gb|EFW27825.1| signal recognition particle protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 561 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 130/240 (54%), Gaps = 13/240 (5%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 Q+V+ V+E + ++L ++ +W P +I++ G+ G GKTT+ GKL + + D G + Sbjct: 72 QQVVKIVNEELIEVLGGQTREIHW-ADRGPTIIMLAGLQGAGKTTLAGKLGRWLRDQGKR 130 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLI 198 V+L A D R A+ QL + A+R E G+ D A+A + A+ DV++ Sbjct: 131 VLLVASDLQRPNAVTQLSVVAERAGVHVWAPEPGNGVGDPVAVARSGVEHARTNGYDVVV 190 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +DTAGRL ++ +M + IR+ D +PH +L VLDA GQ+A+ F G Sbjct: 191 VDTAGRLGVDAEMM---DQAIRIR---DAVSPHEILFVLDAMVGQDAVNTSVAFRDGVGF 244 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 TG++++K+DG ARGG + + PV F GEG+ D E F A ++ I LD G+ Sbjct: 245 TGVVLSKLDGDARGGAALSVRGVTGAPVLFSSTGEGLTDFERFHADRMASRI---LDMGD 301 >gi|323466313|gb|ADX70000.1| Signal recognition protein Ffh [Lactobacillus helveticus H10] Length = 476 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 138/269 (51%), Gaps = 13/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + ++ + + K+V Q+V+ V+E + KM+ + P N Sbjct: 39 LLEADVNFKVVKDFIKTIKKEALGKEVQESLNPGQQVIKIVNEELTKMMGEEAVPLNKS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 H P +I++VG+ G GKTT +GKL+ + + +L AGD +R AA+DQLK ++ Sbjct: 98 KHIPTIIMMVGLQGTGKTTTVGKLAYHLQKTQKARPLLIAGDIYRPAAVDQLKQIGEQLK 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + D A + + +A K D ++IDTAGRL + LM + ++ +V + Sbjct: 158 VPVFSKDGEKDVAKIVQDGLAEADKNKNDYVLIDTAGRLEIDEPLMEELERVKKVAQ--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P ++L V+DA TGQ A + F TG+I+TK+DG RGG + I P+ Sbjct: 215 ---PDNILLVVDAMTGQAATDVAKGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE ++DL+ F ++ I G D Sbjct: 272 LFTGQGEKLSDLDIFHPDRMASRILGMGD 300 >gi|282850847|ref|ZP_06260221.1| signal recognition particle protein [Lactobacillus gasseri 224-1] gi|282557799|gb|EFB63387.1| signal recognition particle protein [Lactobacillus gasseri 224-1] Length = 440 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 87/269 (32%), Positives = 138/269 (51%), Gaps = 14/269 (5%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + ++++ + K+V Q+++ V + + KM+ + N Sbjct: 3 LLEADVNFKVVKDFIKKIKKEALGKEVQESLNPGQQIIKIVDDELTKMMGEEAVSLNKS- 61 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 H P +I++VG+ G GKTT +GKL+ M + + +L AGD +R AAIDQLK + + Sbjct: 62 QHIPTIIMMVGLQGTGKTTTVGKLANYLMKNEKARPLLIAGDIYRPAAIDQLKQIGQQLN 121 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 V SE D A + ++A K D ++IDTAGRL + LM + ++ V Sbjct: 122 VP-VYSEDNQDVAEIVKHGLEEADKNKNDYVLIDTAGRLEIDEQLMDELKRVTAVAH--- 177 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P + L V+DA TGQ A + E F+ TG+I+TK+DG RGG + I +P+ Sbjct: 178 ---PDNTLLVVDAMTGQAATQVAEGFNNDLDLTGIILTKLDGDTRGGAALSIRAVTGLPI 234 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE + DL F ++ I G D Sbjct: 235 IFTGQGEKLTDLSTFHPDRMASRILGMGD 263 >gi|161507707|ref|YP_001577663.1| Signal recognition protein Ffh [Lactobacillus helveticus DPC 4571] gi|260101393|ref|ZP_05751630.1| signal recognition particle protein [Lactobacillus helveticus DSM 20075] gi|160348696|gb|ABX27370.1| Signal recognition protein Ffh [Lactobacillus helveticus DPC 4571] gi|260084804|gb|EEW68924.1| signal recognition particle protein [Lactobacillus helveticus DSM 20075] gi|328465660|gb|EGF36877.1| signal recognition particle protein [Lactobacillus helveticus MTCC 5463] Length = 476 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 138/269 (51%), Gaps = 13/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + ++ + + K+V Q+V+ V+E + KM+ + P N Sbjct: 39 LLEADVNFKVVKDFIKTIKKEALGKEVQESLNPGQQVIKIVNEELTKMMGEEAVPLNKS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 H P +I++VG+ G GKTT +GKL+ + + +L AGD +R AA+DQLK ++ Sbjct: 98 KHIPTIIMMVGLQGTGKTTTVGKLAYHLQKTQKARPLLIAGDIYRPAAVDQLKQIGEQLK 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + D A + + +A K D ++IDTAGRL + LM + ++ +V + Sbjct: 158 VPVFSEDGEKDVAKIVQDGLAEADKNKNDYVLIDTAGRLEIDEPLMEELERVKKVAQ--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P ++L V+DA TGQ A + F TG+I+TK+DG RGG + I P+ Sbjct: 215 ---PDNILLVVDAMTGQAATDVAKGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE ++DL+ F ++ I G D Sbjct: 272 LFTGQGEKLSDLDIFHPDRMASRILGMGD 300 >gi|317031653|ref|XP_001393946.2| signal recognition particle protein [Aspergillus niger CBS 513.88] Length = 533 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 91/301 (30%), Positives = 145/301 (48%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ + D+ S LD D + +E+ L+ +D+ V + Q + + + L Sbjct: 9 RINAAVNDLTRSNNLDEKAFDDMIKEICAALLSADVNVRLVQSLRKSIKSSVNFASLPPA 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D EL+ ++ P ++PF R +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--ELV-SLVDPHAEPFRPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G K L DTFR+ A DQLK A + + S +D A +A E + + ++ Sbjct: 125 YQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAIVAAEGVAKFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 +++I+DT+GR L + ++ + P + VLD+T GQ A Q F A Sbjct: 185 EIIIVDTSGRHKQEEELFTEMTQIQTAV------TPDQTILVLDSTIGQAAEAQSSAFKA 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V P+ +LG GE + DLE F K F + G Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATHTPIIYLGTGEHLMDLERFEPKAFIQKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|37680973|ref|NP_935582.1| signal recognition particle GTPase [Vibrio vulnificus YJ016] gi|37199723|dbj|BAC95553.1| signal recognition particle GTPase [Vibrio vulnificus YJ016] Length = 476 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 99/306 (32%), Positives = 152/306 (49%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D +++ L ++ L+ +D+ + V ++ V + K A Sbjct: 20 FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVREFVARV--KEKA 77 Query: 77 KDVSVQRVLYDVSELIH------KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 V V + L E I + +M S + P VIL+ G+ G GKTT +GK Sbjct: 78 VGVEVSKSLTPGQEFIKIVQGELEAVMGESNEALNLAAQPPAVILMAGLQGAGKTTSVGK 137 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 LSK + + K V++ + D +R AAI QL+ A DF S +A A A Sbjct: 138 LSKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSADQKPIDIANAAIDHA 197 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVLI+DTAGRL + +M I ++ + P L V+DA TGQ+A Sbjct: 198 KKKFFDVLIVDTAGRLAIDEAMMGEIQQLHSAIN------PVETLFVVDAMTGQDAANTA 251 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK+DG ARGG + + P+ FLGVGE + LEPF ++ Sbjct: 252 KAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASR 311 Query: 310 ITGCLD 315 I G D Sbjct: 312 ILGMGD 317 >gi|158320496|ref|YP_001513003.1| signal recognition particle protein [Alkaliphilus oremlandii OhILAs] gi|158140695|gb|ABW19007.1| signal recognition particle protein [Alkaliphilus oremlandii OhILAs] Length = 448 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 122/234 (52%), Gaps = 7/234 (2%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 Q+V+ V+E + +++ N+ S P +I++VG+ G GKTT GKL+ + G + Sbjct: 73 QQVIKIVNEELTELMGTSQSKINFS-SKPPTIIMLVGLQGAGKTTTTGKLAGMLKKQGKR 131 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 +L A D +R AAI QL++ ++ ++ + DV++IDT Sbjct: 132 PLLIACDIYRPAAIKQLQVVGEKVGVPVFTMGDKQSPVDISKAGIDHGMSHGNDVILIDT 191 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AGRLH + LM + + +K PH +L V+D+ TGQ+A+ E F+ G G+ Sbjct: 192 AGRLHVDEELMDELKDIKNDVK------PHEILLVVDSMTGQDAVNVAEHFNEKLGIDGV 245 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I+TK+DG RGG + + P+ F G+GE ++DLEPF ++ I G D Sbjct: 246 ILTKLDGDTRGGAALSVRAVTNKPIKFTGLGEKLDDLEPFYPDRMASRILGMGD 299 >gi|71738105|ref|YP_273611.1| signal recognition particle protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558658|gb|AAZ37869.1| signal recognition particle protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 501 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 97/311 (31%), Positives = 155/311 (49%), Gaps = 19/311 (6%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLD-DGVREELEDL---LIRSDIGVAVAQKIVEELL 71 K ++ F + + +L + + + +L+ D +++ L ++ L+ +D+ + V + V + Sbjct: 40 KGSRMFENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNV- 98 Query: 72 TKRYAKDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKT 125 K A V R L +++ L L N D P VIL+ G+ G GKT Sbjct: 99 -KERAVGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLMLNVTPPAVILMAGLQGAGKT 157 Query: 126 TVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 T GKL++ + + K VM+ + D +R AAI QL+ A+ F S+I +A Sbjct: 158 TTAGKLARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALA 217 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A K+A+ K +DV+I+DTAGRLH + +M I + K P L V+DA TGQ+ Sbjct: 218 AIKEARLKFIDVVIVDTAGRLHVDVEMMGEIQALHAATK------PAETLFVVDAMTGQD 271 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A + F TG+I+TK+DG ARGG + + P+ F+G+GE LEPF Sbjct: 272 AANTAKAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPD 331 Query: 305 DFSAVITGCLD 315 ++ I G D Sbjct: 332 RIASRILGMGD 342 >gi|295425198|ref|ZP_06817901.1| signal recognition particle protein [Lactobacillus amylolyticus DSM 11664] gi|295064974|gb|EFG55879.1| signal recognition particle protein [Lactobacillus amylolyticus DSM 11664] Length = 476 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 153/307 (49%), Gaps = 19/307 (6%) Query: 20 GFASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 F + S ++++ + ++ IS ++ RE + L+ +D+ V + ++++ + Sbjct: 2 AFENLSERIQKALKNLTGKGKISEEDINKASRE-IRLALLEADVNFKVVKDFIKKIKKEA 60 Query: 75 YAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 K+V Q+V+ V+E + KM+ + N H P +I++VG+ G GKTT +G Sbjct: 61 LGKEVQESLNPGQQVIKIVNEELTKMMGETAVGLNKS-KHIPTIIMMVGLQGTGKTTTVG 119 Query: 130 KLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+ + + +L AGD +R AA+DQLK D+ D A + + + Sbjct: 120 KLAYHLQKTEKARPLLIAGDIYRPAAVDQLKQIGDQLKVPVYSEADEKDVAKIVQDGLAE 179 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A K D +IIDTAGRL + LM + ++ +V + P ++L V+DA TGQ A Sbjct: 180 ADKNKNDYVIIDTAGRLEIDEPLMEELERIKKVAQ------PDNILLVVDAMTGQAATDV 233 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+I+TK+DG RGG + I P+ + G GE + DLE F ++ Sbjct: 234 AKGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPIIYTGQGEKLTDLEDFHPDRMAS 293 Query: 309 VITGCLD 315 I G D Sbjct: 294 RILGMGD 300 >gi|237739056|ref|ZP_04569537.1| signal recognition particle protein [Fusobacterium sp. 2_1_31] gi|229423656|gb|EEO38703.1| signal recognition particle protein [Fusobacterium sp. 2_1_31] Length = 444 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 6/207 (2%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P +I++ G+ G GKTT KL+K + K++L D +R AAI QL++ + D Sbjct: 98 RNPTIIMLAGLQGAGKTTFAAKLAKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVD 157 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 E D +A A ++A+ +I+DTAGRLH + LM + ++ + +K Sbjct: 158 VYSEEDNKDVVGIATRAIEKAKEINATYMIVDTAGRLHVDETLMNELKELKKAIK----- 212 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P +L V+DA GQ+A+ E F+ G+I+TK+DG RGG + I P+ F Sbjct: 213 -PQEILLVVDAMIGQDAVNLAESFNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKF 271 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +GVGE +ND+E F + I G D Sbjct: 272 IGVGEKLNDIEIFHPDRLVSRILGMGD 298 >gi|227536075|ref|ZP_03966124.1| Sec family type I general secretory pathway protein signal recognition particle protein [Sphingobacterium spiritivorum ATCC 33300] gi|227243972|gb|EEI93987.1| Sec family type I general secretory pathway protein signal recognition particle protein [Sphingobacterium spiritivorum ATCC 33300] Length = 445 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 76/212 (35%), Positives = 113/212 (53%), Gaps = 7/212 (3%) Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWAD 163 D S P VIL+ G+NG GKTT GKL+ + D G K +L AGD +R AAIDQL++ Sbjct: 93 LDISKNPTVILIAGLNGAGKTTFSGKLANYLKDKKGKKPLLVAGDVYRPAAIDQLEVLGG 152 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + + +D A+A ++A+ +V+IIDTAGRL + LM I + K Sbjct: 153 QVGVPVFVNRESNDPIAIAQAGVEEAKRNGHNVVIIDTAGRLAIDEALMVEITAVKEATK 212 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 P +L V+D+ TGQ+A+ + F+ TG+++TK+DG RGG + I Sbjct: 213 ------PQEILFVVDSMTGQDAVNTAKAFNDRLDFTGVVLTKLDGDTRGGAALSIKSVVN 266 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + L+ F ++ I G D Sbjct: 267 KPIKFIGTGEKMEALDVFYPDRMASRILGMGD 298 >gi|261419395|ref|YP_003253077.1| signal recognition particle protein [Geobacillus sp. Y412MC61] gi|261375852|gb|ACX78595.1| signal recognition particle protein [Geobacillus sp. Y412MC61] Length = 469 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 112/206 (54%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT GKL+ + K +L A D +R AAI QL+ + Sbjct: 101 PTVVMMVGLQGAGKTTTTGKLANLLRKRHNRKPLLVAADVYRPAAIKQLETLGKQLDMPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 ++ +A +A ++A+ + D ++IDTAGRLH + LM + +M +K Sbjct: 161 FSLGEHANPVEIAKQALERAKEEHYDYVLIDTAGRLHIDEALMDELKQMKEAVK------ 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P + V+DA TGQ+A+ + FH G TG+I+TK+DG RGG + I P+ F Sbjct: 215 PDEIFLVVDAMTGQDAVNVAQSFHEQLGITGVILTKLDGDTRGGAALSIRAVTGAPIKFA 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+GE ++ LEPF + ++ I G D Sbjct: 275 GMGEKLDALEPFHPERMASRILGMGD 300 >gi|212636513|ref|YP_002313038.1| signal recognition particle protein [Shewanella piezotolerans WP3] gi|212557997|gb|ACJ30451.1| Signal recognition particle protein [Shewanella piezotolerans WP3] Length = 453 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 96/317 (30%), Positives = 158/317 (49%), Gaps = 28/317 (8%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIV 67 +WI F + + +L + +I RL ++ V+E L ++ L+ +D+ + V ++ V Sbjct: 23 NWIM-----FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFV 77 Query: 68 EELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + + ++VS Q + V + + ++ + + P VI++ G+ G Sbjct: 78 NSVKERAVGQEVSKSLSPGQAFIKIVQSELENAMGEANEALDLS-AQPPAVIMMAGLQGA 136 Query: 123 GKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT + KLSK + + K V++ + D +R AAI QL+ A +F S++ + Sbjct: 137 GKTTSVAKLSKFLREREKKSVLVVSADVYRPAAIKQLETLATEVEVEFFPSDVSQKPVDI 196 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLD 238 A A A+ K +DV+I+DTAGRLH + +M I D HA P L V+D Sbjct: 197 ANAAIAHAKLKFIDVVIVDTAGRLHVDEAMMDEIK---------DLHATVNPVETLFVVD 247 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A TGQ+A + F+ TG+++TK+DG ARGG + I P+ FLGVGE + L Sbjct: 248 AMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRNITGKPIKFLGVGEKTDAL 307 Query: 299 EPFVAKDFSAVITGCLD 315 E F ++ I G D Sbjct: 308 EAFHPDRIASRILGMGD 324 >gi|262393308|ref|YP_003285162.1| signal recognition particle subunit Ffh SRP54 [Vibrio sp. Ex25] gi|269966295|ref|ZP_06180383.1| Signal recognition particle GTPase [Vibrio alginolyticus 40B] gi|262336902|gb|ACY50697.1| signal recognition particle subunit Ffh SRP54 [Vibrio sp. Ex25] gi|269829092|gb|EEZ83338.1| Signal recognition particle GTPase [Vibrio alginolyticus 40B] Length = 460 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 101/310 (32%), Positives = 153/310 (49%), Gaps = 27/310 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D ++E L ++ L+ +D+ + V ++ V + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFVNRV--KEKA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E I + L ++ N + P V+L+ G+ G GKTT +G Sbjct: 60 VGVEVSKSLTPGQEFIKIVQTELEAVMGESNEALNL-AAQPPAVLLMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KLSK + + K V++ + D +R AAI QL+ A DF S +A A Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSPDQKPIDIANAAIDH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNA 245 A+ K DVLI+DTAGRL + +M I D HA P L V+DA TGQ+A Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEEMMGEIK---------DLHAAINPVETLFVVDAMTGQDA 229 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + F TG+++TK+DG ARGG + + P+ FLGVGE + LEPF Sbjct: 230 ANTAKAFGDALPLTGVVLTKVDGDARGGAALSVRHVTGKPIKFLGVGEKTDALEPFHPDR 289 Query: 306 FSAVITGCLD 315 ++ I G D Sbjct: 290 VASRILGMGD 299 >gi|262164016|ref|ZP_06031755.1| signal recognition particle subunit Ffh SRP54 [Vibrio mimicus VM223] gi|262027544|gb|EEY46210.1| signal recognition particle subunit Ffh SRP54 [Vibrio mimicus VM223] Length = 453 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 144/288 (50%), Gaps = 20/288 (6%) Query: 39 RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95 R +D +++ L ++ L+ +D+ + V + V + K A V V + L E I + Sbjct: 13 RLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGAVGVEVSKSLTPGQEFIKIV 70 Query: 96 LMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAG 147 L ++ N + P VIL+ G+ G GKTT +GKLSK + + K V++ + Sbjct: 71 RQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVGKLSKLLKERDKKKVLVVSA 129 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 D +R AAI QL+ A+ DF S +A A A+ K DVLI+DTAGRL Sbjct: 130 DVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDHAKKKFYDVLIVDTAGRLAI 189 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + +MA I + + + P L V+DA TGQ+A + F TG+I+TK+D Sbjct: 190 DEQMMAEIQALHKAI------TPVETLFVVDAMTGQDAANTAKAFGDALPLTGVILTKVD 243 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G ARGG + + P+ FLGVGE + LEPF ++ I G D Sbjct: 244 GDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGD 291 >gi|19704725|ref|NP_604287.1| Signal recognition particle, subunit FFH/SRP54 [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328503|ref|ZP_06871023.1| signal recognition particle protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19715045|gb|AAL95586.1| Signal recognition particle, subunit FFH/SRP54 [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296154409|gb|EFG95207.1| signal recognition particle protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 444 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 6/207 (2%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P +I++ G+ G GKTT KL+K + K++L D +R AAI QL++ + D Sbjct: 98 RNPTIIMLAGLQGAGKTTFAAKLAKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVD 157 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 E D +A A ++A+ +I+DTAGRLH + LM + ++ + +K Sbjct: 158 VYSEEDNKDVVGIATRAIEKAKEINATYMIVDTAGRLHVDETLMDELKELKKAIK----- 212 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P +L V+DA GQ+A+ E F+ G+I+TK+DG RGG + I P+ F Sbjct: 213 -PQEILLVVDAMIGQDAVNLAESFNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKF 271 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +GVGE +ND+E F + I G D Sbjct: 272 IGVGEKLNDIEIFHPDRLVSRILGMGD 298 >gi|15616997|ref|NP_240210.1| signal recognition particle protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11387174|sp|P57473|SRP54_BUCAI RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog gi|25294407|pir||H84975 signal recognition particle protein [imported] - Buchnera sp. (strain APS) gi|10039062|dbj|BAB13096.1| signal recognition particle protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 451 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 94/306 (30%), Positives = 165/306 (53%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + I++ RL ++ ++E E+ L+ +D+ ++V +K +E + K Sbjct: 2 FNNLTQRLSDSLKKILNKGRLTEENIKETIREVRKALLEADVALSVIKKFIENVKKKSIG 61 Query: 77 KDVSVQRVLYDVSELI----HKMLMPL-SKPFNWDFS-HRPHVILVVGVNGVGKTTVIGK 130 +++ + L E I H+++ + K + +FS P VILVVG+ G GKTT + K Sbjct: 62 HEIN--KSLTPGQEFIKIVKHELIFAMGEKNHSLNFSIEPPAVILVVGLQGSGKTTSLAK 119 Query: 131 L-SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L + K+++ + DT+R+AAI+QLKI +D+ DF S+ + A K A Sbjct: 120 LGKWIKNKYKKKILITSTDTYRAAAIEQLKILSDQIEIDFFESDKHHTPIEITKNAIKYA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVL+IDTAGRLH + +M I ++ + K ++ L ++D+ GQ+A+ Sbjct: 180 KLKLYDVLLIDTAGRLHIDKKMMNEIQQIQVISKAIE------TLLIVDSMMGQDAINMA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 ++F+ +G+I+TK DG +R G + + P+ F+G GE I LEPF + + Sbjct: 234 KIFNNDLLISGIILTKTDGDSRSGIALSMRYITGKPIKFIGTGEKIISLEPFHPERIADR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMND 299 >gi|150390508|ref|YP_001320557.1| signal recognition particle protein [Alkaliphilus metalliredigens QYMF] gi|149950370|gb|ABR48898.1| signal recognition particle protein [Alkaliphilus metalliredigens QYMF] Length = 447 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 87/270 (32%), Positives = 140/270 (51%), Gaps = 16/270 (5%) Query: 53 LIRSDIGVAVAQ---KIVEELLT--KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + KIV+E T + + Q+V+ V+E + +++ + Sbjct: 39 LLEADVNFKVVKDFVKIVKERATGSEVFESLTPGQQVIKIVNEELTELMGTTQSKITFS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P VI++VG+ G GKTT GKL+ + G + +L AGD +R AAI QL++ + Sbjct: 98 SKPPTVIMLVGLQGAGKTTTSGKLAGYLKKQGKRPLLVAGDIYRPAAIKQLEVVG--SQV 155 Query: 168 DFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 D +G + +A + DV++IDTAGRLH + LM + + +K Sbjct: 156 DVPVFTLGDQISPVDIAKAGVEHGIKHGNDVVLIDTAGRLHIDDTLMDELKDIKTTVK-- 213 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P +L V+D+ TGQ+A+ E F G G+I+TK+DG RGG + + + P Sbjct: 214 ----PQEILLVVDSMTGQDAVNVAEHFDTKLGVDGIILTKLDGDTRGGAALSVRAVTRKP 269 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F+G+GE +NDLEPF ++ I G D Sbjct: 270 IKFVGLGEKLNDLEPFHPDRMASRILGMGD 299 >gi|262065932|ref|ZP_06025544.1| signal recognition particle protein [Fusobacterium periodonticum ATCC 33693] gi|291380412|gb|EFE87930.1| signal recognition particle protein [Fusobacterium periodonticum ATCC 33693] Length = 444 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 6/207 (2%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P +I++ G+ G GKTT KL+K + K++L D +R AAI QL++ + D Sbjct: 98 RNPTIIMLAGLQGAGKTTFAAKLAKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVD 157 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 E D +A A ++A+ +I+DTAGRLH + LM + ++ + +K Sbjct: 158 VYSEEDNKDVVGIATRAIEKAKEINATYMIVDTAGRLHIDETLMNELKELKKAIK----- 212 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P +L V+DA GQ+A+ E F+ G+I+TK+DG RGG + I P+ F Sbjct: 213 -PQEILLVVDAMIGQDAVNLAESFNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKF 271 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +GVGE +ND+E F + I G D Sbjct: 272 IGVGEKLNDIEIFHPDRLVSRILGMGD 298 >gi|198284558|ref|YP_002220879.1| signal recognition particle protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665204|ref|YP_002427226.1| signal recognition particle protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|7769071|gb|AAF69242.1|AF173880_5 signal recognition particle protein-like protein [Acidithiobacillus ferrooxidans] gi|198249079|gb|ACH84672.1| signal recognition particle protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517417|gb|ACK78003.1| signal recognition particle protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 458 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 98/308 (31%), Positives = 156/308 (50%), Gaps = 22/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIV----EELLT 72 F + + KL + ++ RL +D +R+ L D+ L+ +D+ + V + + E + Sbjct: 2 FDNLTQKLTQTFKNLRGQGRLSEDNIRDALRDVRLALLEADVALPVVKDFINNVRESAMG 61 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN--WDFSHRPH-VILVVGVNGVGKTTVIG 129 + K ++ +V +++H L+ L N D S RP VIL+ G+ G GKTT Sbjct: 62 EAVVKSLTPGQVFV---KIVHDELVQLMGAHNDSLDLSARPPAVILLAGLQGSGKTTTSA 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+ + D K V++ + D +R AA++QL D S G +A +A + Sbjct: 119 KLALWLKDKEKKRVLMVSTDVYRPAAMEQLVHLGKDIEVDVFPSSPGQQPVRIAQDAVEA 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 AQ DVLI+DTAGRLH + +MA + +K P +L V+DA TGQ+A+ Sbjct: 179 AQRGVYDVLIVDTAGRLHVDGEMMAEAQALTAAVK------PVELLFVVDAMTGQDAVNT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND-LEPFVAKDFS 307 + F+ TG+I+TK DG ARGG + + P+ F+G+GE I LEPF + + Sbjct: 233 AKAFNDALPLTGVILTKADGDARGGAALSVRAITGKPIKFIGIGEKIRKGLEPFYPERMA 292 Query: 308 AVITGCLD 315 + I G D Sbjct: 293 SRILGMGD 300 >gi|331009220|gb|EGH89276.1| signal recognition particle protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 458 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 152/306 (49%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRLD-DGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L+ D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNV--KERA 59 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N D P VIL+ G+ G GKTT GK Sbjct: 60 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL+ A+ F S+I +A A K+A Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K +DV+I+DTAGRLH + +M I + K P L V+DA TGQ+A Sbjct: 180 RLKFIDVVIVDTAGRLHVDVEMMGEIQALHAATK------PAETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK+DG ARGG + + P+ F+G+GE LEPF ++ Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|320155362|ref|YP_004187741.1| signal recognition particle, subunit Ffh SRP54 [Vibrio vulnificus MO6-24/O] gi|326423856|ref|NP_760505.2| signal recognition particle protein [Vibrio vulnificus CMCP6] gi|319930674|gb|ADV85538.1| signal recognition particle, subunit Ffh SRP54 [Vibrio vulnificus MO6-24/O] gi|319999228|gb|AAO10032.2| signal recognition particle protein [Vibrio vulnificus CMCP6] Length = 458 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 99/306 (32%), Positives = 152/306 (49%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D +++ L ++ L+ +D+ + V ++ V + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVREFVARV--KEKA 59 Query: 77 KDVSVQRVLYDVSELIH------KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 V V + L E I + +M S + P VIL+ G+ G GKTT +GK Sbjct: 60 VGVEVSKSLTPGQEFIKIVQGELEAVMGESNEALNLAAQPPAVILMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 LSK + + K V++ + D +R AAI QL+ A DF S +A A A Sbjct: 120 LSKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSADQKPIDIANAAIDHA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVLI+DTAGRL + +M I ++ + P L V+DA TGQ+A Sbjct: 180 KKKFFDVLIVDTAGRLAIDEAMMGEIQQLHSAIN------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK+DG ARGG + + P+ FLGVGE + LEPF ++ Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|302872185|ref|YP_003840821.1| signal recognition particle protein [Caldicellulosiruptor obsidiansis OB47] gi|302575044|gb|ADL42835.1| signal recognition particle protein [Caldicellulosiruptor obsidiansis OB47] Length = 443 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 154/307 (50%), Gaps = 22/307 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F+S S KL++ + +L + ++E ++++ L+ +D+ V + + + K Sbjct: 2 FSSLSEKLQDVFKKLRGKGKLTEKDIKEAMKEVKLALLEADVNYKVVKDFINTVTQKAVG 61 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH---VILVVGVNGVGKTTVI 128 ++V Q+V+ ++++ ++ L + + P + ++VG+ G GKTT Sbjct: 62 EEVLESLTPAQQVI----KIVYDEMVNLLGGSDTKLTFSPSGFSIYMMVGLQGSGKTTTA 117 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ + G L A D +R AAI QL++ A + DA +A + + Sbjct: 118 GKLAGLLKKQGKNPSLVACDIYRPAAIKQLEVVAQKVGVKCYADYTSQDAVKIAKDGIEF 177 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A++ + DV+IIDTAGRLH N LM + + +K P +L V+DA TGQ+A+ Sbjct: 178 AKSNRSDVVIIDTAGRLHINQELMDELKNIKNAVK------PTEILLVVDAMTGQDAVNV 231 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 E F+ G G+IMTK+DG RGG + + P+ F GVGE + DLE F ++ Sbjct: 232 AEAFNDQLGIDGIIMTKLDGDTRGGAALSVKAITGKPIKFAGVGEKMEDLEVFHPDRMAS 291 Query: 309 VITGCLD 315 I G D Sbjct: 292 RILGMGD 298 >gi|298488273|ref|ZP_07006306.1| signal recognition particle [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157212|gb|EFH98299.1| signal recognition particle [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330985047|gb|EGH83150.1| signal recognition particle protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 458 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 152/306 (49%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNV--KERA 59 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N D P VIL+ G+ G GKTT GK Sbjct: 60 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL+ A+ F S+I +A A K+A Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K +DV+I+DTAGRLH + +M I + K P L V+DA TGQ+A Sbjct: 180 KLKFIDVVIVDTAGRLHVDVEMMGEIQALHAATK------PAETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK+DG ARGG + + P+ F+G+GE LEPF ++ Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|323141933|ref|ZP_08076793.1| signal recognition particle protein [Phascolarctobacterium sp. YIT 12067] gi|322413600|gb|EFY04459.1| signal recognition particle protein [Phascolarctobacterium sp. YIT 12067] Length = 448 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 77/205 (37%), Positives = 113/205 (55%), Gaps = 6/205 (2%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VI++VG+ G GKTT GKL+ + K +L AGD +R AAI QL++ ++ + Sbjct: 101 PTVIMLVGLQGAGKTTTAGKLANYLKRKHKKPLLVAGDVYRPAAITQLQVLGEQLNVPVF 160 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 +A +A ++A + D +IIDTAGRLH N LM + +R +K P Sbjct: 161 TLGDKVSPVEIAQKAMEKAHSLACDTVIIDTAGRLHINEELM----EELRNIK--GAVHP 214 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 +L V+DA TGQ+A+ E F G GLI+TK+DG ARGG ++ + PV +G Sbjct: 215 QEILLVVDAMTGQDAVTVAESFDKELGIDGLIVTKLDGDARGGAVLSVKAVTGKPVKLIG 274 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 +GE ++ LEPF ++ I G D Sbjct: 275 LGEKLDALEPFHPDRMASRILGMGD 299 >gi|154249332|ref|YP_001410157.1| signal recognition particle protein [Fervidobacterium nodosum Rt17-B1] gi|154153268|gb|ABS60500.1| signal recognition particle protein [Fervidobacterium nodosum Rt17-B1] Length = 434 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 94/308 (30%), Positives = 155/308 (50%), Gaps = 28/308 (9%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE------- 68 KL+ F S K K I+ R +++ + + ++ L+ +D+ V ++ VE Sbjct: 8 KLSNAFKVLSGKGK------ITERNIEEAI-QIVKTALLAADVNYKVVKEFVENVKKRAL 60 Query: 69 -ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 E + K D +++ D ELI L+ +PF HRP I++VG+ G GKTT Sbjct: 61 GEEVLKSLTPDQMFVKIIRD--ELIK--LLGEREPFK--LIHRPAYIMMVGLQGTGKTTS 114 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 K++ + G +L A DT+R AAIDQL+ + + + +A + EA K Sbjct: 115 AAKIANYLKKQGKNPILVAADTYRPAAIDQLETLGKKIGVPVITGD-RKNALKIVEEAKK 173 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 Q + DV+I+DTAGRLH + +M + ++ ++ P +L +DA GQ+A+ Sbjct: 174 QVKDSGHDVVILDTAGRLHIDDEMMQELEQIKEMVN------PDEILLTVDAMAGQDAVN 227 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG ++TK+DG +RGG ++ I PV F+GVGE I+D + F + Sbjct: 228 SGKTFNDRLNVTGFVITKLDGDSRGGVILTIRYITGKPVKFVGVGEKIDDFDEFYPDRIA 287 Query: 308 AVITGCLD 315 + I G D Sbjct: 288 SRILGLGD 295 >gi|21672654|ref|NP_660721.1| signal recognition particle protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25091302|sp|Q8K9F7|SRP54_BUCAP RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog gi|21623290|gb|AAM67932.1| signal recognition particle protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 450 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 91/294 (30%), Positives = 158/294 (53%), Gaps = 23/294 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-----DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F + + +L + + II+ RL D +RE + L+ +D+ ++V +K ++ + K Sbjct: 2 FNNLTERLSQSLRKIINKGRLTEENIKDTIRE-VRKALLEADVTLSVIKKFIQNVSKKAI 60 Query: 76 AKDVSVQRVLYDVSELI----HKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVI 128 +++ + L E I +++++ + + N D + P +ILVVG+ GVGKTT + Sbjct: 61 GHEIN--KSLTPGQEFIKIVKNELILSMGEK-NHDLNLSIQPPAIILVVGLQGVGKTTTL 117 Query: 129 GKLSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 KL+K + + K +L + D +R+AAI QL+I +D+ DF S+ + EA + Sbjct: 118 VKLAKWIKEKYKKKILTVSTDIYRAAAIKQLQILSDQVKIDFYLSDTTQTPINITKEAIE 177 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ K D+L+IDTAGRLH N+ +M I + + K P L ++D+ GQ+A+ Sbjct: 178 HAKLKLYDLLLIDTAGRLHINTEMMNEINTIQNISK------PIETLLIVDSMMGQDAIN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F A +G+++TK D AR G + I P+ F+G GE ++ LEPF Sbjct: 232 IAKKFSASLSISGIVITKTDSDARSGVALSIRHITGKPIKFIGTGEKLHQLEPF 285 >gi|255067740|ref|ZP_05319595.1| signal recognition particle protein [Neisseria sicca ATCC 29256] gi|255047951|gb|EET43415.1| signal recognition particle protein [Neisseria sicca ATCC 29256] Length = 456 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 151/286 (52%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKML 96 +D ++E L ++ L+ +D+ + V ++ V + K ++V V + D + ++++ L Sbjct: 24 EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEV-VGSLTPDQAFIGVVNQAL 82 Query: 97 MPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 + L N + P V+L+ G+ G GKTT +GKL++ + ++ KV++ + D +R Sbjct: 83 IELMGKENSSLDLAAVPPAVVLMAGLQGAGKTTTVGKLARLLKNEQKKKVLVVSADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL++ A++ DF S+ +A A A+ DVL++DTAGRL + +M Sbjct: 143 AAIEQLRLLAEQVGIDFFPSDSNQKPVEIATAAIDYAKKHFYDVLMVDTAGRLAIDEEMM 202 Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I + HA P L V+DA GQ+A+ + F+ TG+I+TKMDG Sbjct: 203 NEIKAL---------HAAVNPVETLFVVDAMLGQDAVNTAQAFNEALPLTGVILTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+G+GE I LEPF ++ I G D Sbjct: 254 SRGGAALSVRHVTGKPIKFIGIGEKITGLEPFYPDRIASRILGMGD 299 >gi|330807704|ref|YP_004352166.1| Signal recognition particle protein (From sprot) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375812|gb|AEA67162.1| Signal recognition particle protein (From sprot) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 458 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 95/309 (30%), Positives = 155/309 (50%), Gaps = 25/309 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KERA 59 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N D + P V+L+ G+ G GKTT GK Sbjct: 60 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLNLSAVPPAVVLMAGLQGAGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL+ A+ F S++ +A A K+A Sbjct: 120 LARFLKERKKKSVMVVSADIYRPAAIKQLETLANDIGVTFFPSDLSQKPVDIAQAAIKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246 + K +DV+I+DTAGRLH + +M I + HA P L V+DA TGQ+A Sbjct: 180 KLKFIDVVIVDTAGRLHIDEEMMGEIKAL---------HAAINPVETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F TG+I+TK+DG ARGG + + P+ F+G+GE LEPF + Sbjct: 231 NTAKAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPERI 290 Query: 307 SAVITGCLD 315 ++ I G D Sbjct: 291 ASRILGMGD 299 >gi|289625897|ref|ZP_06458851.1| signal recognition particle protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646205|ref|ZP_06477548.1| signal recognition particle protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330867523|gb|EGH02232.1| signal recognition particle protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 458 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 152/306 (49%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRLD-DGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L+ D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNV--KERA 59 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N D P VIL+ G+ G GKTT GK Sbjct: 60 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL+ A+ F S+I +A A K+A Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K +DV+I+DTAGRLH + +M I + K P L V+DA TGQ+A Sbjct: 180 RLKFIDVVIVDTAGRLHVDVEMMGEIQALHAATK------PAETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK+DG ARGG + + P+ F+G+GE LEPF ++ Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|91228772|ref|ZP_01262682.1| signal recognition particle protein [Vibrio alginolyticus 12G01] gi|91187679|gb|EAS74001.1| signal recognition particle protein [Vibrio alginolyticus 12G01] Length = 460 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 101/310 (32%), Positives = 153/310 (49%), Gaps = 27/310 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D ++E L ++ L+ +D+ + V ++ V + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFVNRV--KEKA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E I + L ++ N + P V+L+ G+ G GKTT +G Sbjct: 60 VGVEVSKSLTPGQEFIKIVQTELEAVMGESNEALNL-AAQPPAVLLMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KLSK + + K V++ + D +R AAI QL+ A DF S +A A Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSPDQKPIDIANAAIDH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNA 245 A+ K DVLI+DTAGRL + +M I D HA P L V+DA TGQ+A Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEEMMGEIK---------DLHAAINPVETLFVVDAMTGQDA 229 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + F TG+++TK+DG ARGG + + P+ FLGVGE + LEPF Sbjct: 230 ANTAKAFGDALPLTGVVLTKVDGDARGGAALSVRHVTGKPIKFLGVGEKTDALEPFHPDR 289 Query: 306 FSAVITGCLD 315 ++ I G D Sbjct: 290 VASRILGMGD 299 >gi|291618577|ref|YP_003521319.1| Ffh [Pantoea ananatis LMG 20103] gi|291153607|gb|ADD78191.1| Ffh [Pantoea ananatis LMG 20103] gi|327394957|dbj|BAK12379.1| signal recognition particle protein Ffh [Pantoea ananatis AJ13355] Length = 453 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 93/309 (30%), Positives = 159/309 (51%), Gaps = 25/309 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D +++ L ++ L+ +D+ + V + + + Sbjct: 2 FDNLTDRLSQTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINRVKESAVG 61 Query: 77 KDVSVQRVLYDVSELI----HKMLMPLSKPFN-WDFSHRPH-VILVVGVNGVGKTTVIGK 130 DV+ + L E I ++++ + N D + +P V+L+ G+ G GKTT +GK Sbjct: 62 HDVN--KSLTPGQEFIKIVRNELVTAMGAENNALDLAAQPPAVVLMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + KV++ + D +R AAI QL+ A + DF S++ + A ++A Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVGVDFCPSDLSQKPVDIVNNALREA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246 + K DVL++DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HAAINPVETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TG+I+TK+DG ARGG + I P+ F+G+GE + LE F Sbjct: 231 NTAKAFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFMGMGEKTDALEAFYPDRI 290 Query: 307 SAVITGCLD 315 ++ I G D Sbjct: 291 ASRILGMGD 299 >gi|295698285|ref|YP_003602940.1| Ffh protein [Candidatus Riesia pediculicola USDA] gi|291157088|gb|ADD79533.1| Ffh protein [Candidatus Riesia pediculicola USDA] Length = 444 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 93/280 (33%), Positives = 150/280 (53%), Gaps = 24/280 (8%) Query: 47 EELEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSELIHKMLMPL--S 100 ++++ LLI SD+ V V +KI++ E+L + + D E++ K L+ + Sbjct: 32 DKIKTLLIDSDVSVMVVKKILQKIEKEILKSKIEESFDPSG---DFIEIVRKTLLQIIGE 88 Query: 101 KPFN-WDFSHRPH-VILVVGVNGVGKTTV---IGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 K FN +DFS R H +IL+VG G GKTT IG++ +K + KV+LA+ DT R AA Sbjct: 89 KEFNLFDFSKRNHLIILLVGSKGSGKTTTASKIGRVLRKKYNK--KVLLASTDTGRPAAF 146 Query: 156 DQLKIWADRTSADF--VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 DQLK ++ + DF V S+ + LA + + ++++ D LI+DT G +H + + Sbjct: 147 DQLKQLSEYSKVDFFEVNSKKSRSSFDLAKFSIARFKSERYDTLIVDTEGCMHTDLEKLD 206 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 I K+ +++ P V+D+ GQ+A+ F+ G+I+TKMDG +RGG Sbjct: 207 EIQKIHKIV------NPSDTFFVIDSMVGQDAIHSSRTFNKKFPLDGIILTKMDGDSRGG 260 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 + + P+ FLG GE I+ +EPF K + I G Sbjct: 261 CALSVKEVTGKPIAFLGTGEHISLIEPFHPKKIISKILGT 300 >gi|262375650|ref|ZP_06068882.1| signal recognition particle protein [Acinetobacter lwoffii SH145] gi|262309253|gb|EEY90384.1| signal recognition particle protein [Acinetobacter lwoffii SH145] Length = 468 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 94/310 (30%), Positives = 158/310 (50%), Gaps = 27/310 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72 F + + +L + + ++ S +L +D +++ L ++ L+ +D+ + V + K+ EE L Sbjct: 2 FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN--WDFSHRPHVI-LVVGVNGVGKTTVIG 129 + +S + +++H L + N D + +P V+ L+ G+ G GKTT Sbjct: 62 QEVMTQLSPGQAFV---KIVHDELTKMMGEANESLDLAAKPPVVVLLAGLQGAGKTTTAA 118 Query: 130 KLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL++ + + KV + + D +R AAI QL+ A A F+ S + A +Q Sbjct: 119 KLARFLQERQKKKVAMVSADVYRPAAIKQLQTVAGEVGAIFLESSADEKPITIVNRAIEQ 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNA 245 A+ + DVLI+DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 179 AKIQFADVLIVDTAGRLHIDDDMMGEIKEL---------HAAINPTETLFVVDAMTGQDA 229 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + F+ TG+I+TK DG ARGG + + P+ FLG+GE ++ LEPF + Sbjct: 230 ANTAKAFNDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPFHPER 289 Query: 306 FSAVITGCLD 315 + I G D Sbjct: 290 VAQRILGMGD 299 >gi|257457830|ref|ZP_05622989.1| signal recognition particle-docking protein FtsY [Treponema vincentii ATCC 35580] gi|257444543|gb|EEV19627.1| signal recognition particle-docking protein FtsY [Treponema vincentii ATCC 35580] Length = 293 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 88/269 (32%), Positives = 143/269 (53%), Gaps = 5/269 (1%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99 +LDD E + D L+ DIG A +I ++L ++ + + Q V ++++ +L+P Sbjct: 19 KLDDSFFESVTDTLVEGDIGAQFAFEIEDQLRSECKKRKIEQQE---QVLQVLYDILLPF 75 Query: 100 SKPFNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQ 157 ++ + V L++GVNGVGKTT KL++ S ++LAA DTFR+AAI+Q Sbjct: 76 LPVASFMPEKDKTSVYLLLGVNGVGKTTTAAKLAQYFKSRFEAPIILAAADTFRAAAIEQ 135 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ + + + G D A+ ++A + + + ++I DTAGRLHN L+ + K Sbjct: 136 LEYHGKQLDVRVIAHQYGGDPGAVIFDAAQAVRVQGGGLVIADTAGRLHNKENLVRELQK 195 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + R+ + + + VLD T GQ+ RQ E+FH G +I+TK D TA+GG + Sbjct: 196 INRIAESKTDEGCYKKILVLDVTAGQSGFRQAEVFHEAVGVDAVILTKYDSTAKGGIALS 255 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + +PV F G GE D PF A + Sbjct: 256 VGRQLNLPVIFTGTGEKYGDFAPFNADTY 284 >gi|28868679|ref|NP_791298.1| signal recognition particle protein Ffh [Pseudomonas syringae pv. tomato str. DC3000] gi|213969055|ref|ZP_03397194.1| signal recognition particle protein Ffh [Pseudomonas syringae pv. tomato T1] gi|301384050|ref|ZP_07232468.1| signal recognition particle protein Ffh [Pseudomonas syringae pv. tomato Max13] gi|302058756|ref|ZP_07250297.1| signal recognition particle protein Ffh [Pseudomonas syringae pv. tomato K40] gi|302131717|ref|ZP_07257707.1| signal recognition particle protein Ffh [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28851918|gb|AAO54993.1| signal recognition particle protein Ffh [Pseudomonas syringae pv. tomato str. DC3000] gi|213926053|gb|EEB59609.1| signal recognition particle protein Ffh [Pseudomonas syringae pv. tomato T1] Length = 458 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 152/306 (49%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KERA 59 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N D P VIL+ G+ G GKTT GK Sbjct: 60 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL+ A+ F S+I +A A K+A Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K +DV+I+DTAGRLH + +M I + K P L V+DA TGQ+A Sbjct: 180 RLKFIDVVIVDTAGRLHVDVEMMGEIQALHAATK------PAETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK+DG ARGG + + P+ F+G+GE LEPF ++ Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|289207611|ref|YP_003459677.1| signal recognition particle protein [Thioalkalivibrio sp. K90mix] gi|288943242|gb|ADC70941.1| signal recognition particle protein [Thioalkalivibrio sp. K90mix] Length = 462 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 158/307 (51%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S +L+E + + RL +D +++ L ++ L+ +D+ + V ++ V+++ K Sbjct: 2 FDGLSSRLQETMKRLKGQARLTEDNIQDALREVRMALLEADVALPVVREFVKDVKEKALG 61 Query: 77 KDV----SVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIG 129 ++V + + L V +H L+ N + P V+LV G+ G GKTT IG Sbjct: 62 QEVIGSLTPGQALIKV---VHDELVATMGGENAALNLAVQPPAVVLVAGLQGAGKTTSIG 118 Query: 130 KLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL++ + + KV + + D +R AAI QL+ A + F S+ A+A EA + Sbjct: 119 KLARLLREREKKKVAVVSCDVYRPAAIQQLETLAGQVEVTFYPSDTSQKPEAIASEAVAR 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ +VL++DTAGRLH + +MA + + + + P L V+D+ TGQ+A Sbjct: 179 ARRDGTEVLLVDTAGRLHVDEDMMAEVKALHQAID------PIETLFVVDSMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 F TG+++TK DG ARGG + + +P+ F+G+GE + LEPF + ++ Sbjct: 233 ARAFGEALPLTGVVLTKADGDARGGAALSVRQITGVPIKFIGMGERPDALEPFHPERIAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGKGD 299 >gi|153823565|ref|ZP_01976232.1| signal recognition particle protein [Vibrio cholerae B33] gi|126518919|gb|EAZ76142.1| signal recognition particle protein [Vibrio cholerae B33] Length = 434 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 99/307 (32%), Positives = 154/307 (50%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E I + L ++ N + P VIL+ G+ G GKTT +G Sbjct: 60 VGVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KLSK + + K V++ + D +R AAI QL+ A+ DF S +A A Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DVLI+DTAGRL + +MA I + + + P L V+DA TGQ+A Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAADT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+I+TK+DG ARGG + + P+ F+GVGE + LEPF ++ Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|21673993|ref|NP_662058.1| signal recognition particle protein [Chlorobium tepidum TLS] gi|21647139|gb|AAM72400.1| signal recognition particle protein [Chlorobium tepidum TLS] Length = 449 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 81/268 (30%), Positives = 138/268 (51%), Gaps = 12/268 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ VA+K+VE++ K + V Q ++ V++ + +++ ++P N Sbjct: 38 LLSADVNYKVAKKLVEDIREKSLGESVIKSVSPAQMIVKIVNDELTEIMGGQNQPLNLPP 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 P +++V G+ G GKTT KL+K++ G +L A D +R AA++QLK ++ Sbjct: 98 KKIPAIVMVAGLQGSGKTTFCAKLAKRLKKNGKNPILVAADVYRPAAVEQLKTLGEQIDV 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 E DA A + A+A DV+I+DTAGRL + +MA + L Sbjct: 158 PVFSIE-EQDAMKAALGGLEAAKAGAKDVVIVDTAGRLQIDEAMMAEAEALKNRL----- 211 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 +P +L V+D+ GQ A+ + F+ G+++TK+DG ARGG + I + P+ Sbjct: 212 -SPDELLFVVDSMMGQEAVNTAKAFNDRLDFDGVVLTKLDGDARGGAALSIRQVVEKPIK 270 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ VGE ++DL+ F + I G D Sbjct: 271 FMSVGEKVDDLDVFYPDRMAQRILGMGD 298 >gi|116073373|ref|ZP_01470635.1| signal recognition particle protein [Synechococcus sp. RS9916] gi|116068678|gb|EAU74430.1| signal recognition particle protein [Synechococcus sp. RS9916] Length = 499 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 84/280 (30%), Positives = 143/280 (51%), Gaps = 16/280 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPLS 100 DG +E+ L+ +D+ + V + V E+ K +V V+ V D +++H+ L+ + Sbjct: 28 DGALKEVRRALLEADVSLPVVKDFVAEVREKAVGAEV-VRGVSPDQKFIQVVHEQLVEVM 86 Query: 101 KPFNWDFS---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 N + P V+L+ G+ G GKTT KL + D G + ++ D +R AAI+Q Sbjct: 87 GGGNAPLAKADQAPTVVLMAGLQGAGKTTATAKLGLHLKDQGRRALMVGADVYRPAAIEQ 146 Query: 158 LKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 L+ ++ D +G++A +A +A+ + D L++DTAGRL ++ +M Sbjct: 147 LRTLGEQI--DVEVFSLGAEAKPEDIAAAGLAKAKEEGFDTLLVDTAGRLQIDTSMME-- 202 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 +M+R+ + P VL V+D+ GQ A FH G TG ++TK+DG +RGG Sbjct: 203 -EMVRIRTAVQPD---EVLLVVDSMIGQEAAELTRAFHEQVGITGAVLTKLDGDSRGGAA 258 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+G GE + L+PF + ++ I G D Sbjct: 259 LSIRKVSGQPIKFMGTGEKVEALQPFHPERMASRILGMGD 298 >gi|227890253|ref|ZP_04008058.1| Sec family type I general secretory pathway protein signal recognition particle protein [Lactobacillus johnsonii ATCC 33200] gi|268319235|ref|YP_003292891.1| signal recognition particle protein [Lactobacillus johnsonii FI9785] gi|227849067|gb|EEJ59153.1| Sec family type I general secretory pathway protein signal recognition particle protein [Lactobacillus johnsonii ATCC 33200] gi|262397610|emb|CAX66624.1| signal recognition particle protein [Lactobacillus johnsonii FI9785] Length = 476 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 92/306 (30%), Positives = 155/306 (50%), Gaps = 20/306 (6%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F + S +L++ + ++ IS ++D RE + L+ +D+ V + ++++ + Sbjct: 3 FENLSERLQKALKNLTGKGKISEADINDASRE-IRLALLEADVNFKVVKDFIKKIKKEAL 61 Query: 76 AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K+V Q+++ V + + KM+ + N H P +I++VG+ G GKTT +GK Sbjct: 62 GKEVQDSLNPGQQIIKIVDDELTKMMGEEAVSLNKS-PHIPTIIMMVGLQGTGKTTTVGK 120 Query: 131 LSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L+ M + + +L AGD +R AA++QLK + V SE D A + ++A Sbjct: 121 LANYLMKNEKARPLLIAGDIYRPAAMEQLKQIGQQLDVP-VYSEDNQDVAEIVKHGLEEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 K D ++IDTAGRL + LM + ++ V P + L V+DA TGQ A + Sbjct: 180 DKNKNDYVLIDTAGRLEIDEQLMDELKRVTEVAH------PDNTLLVVDAMTGQAATQVA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F+ TG+++TK+DG RGG + I +P+ F G GE + DL F ++ Sbjct: 234 EGFNNDLDLTGIVLTKLDGDTRGGAALSIRAVTGLPIIFTGQGEKLTDLSTFHPDRMASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|319938302|ref|ZP_08012699.1| signal recognition particle GTPase [Coprobacillus sp. 29_1] gi|319806595|gb|EFW03253.1| signal recognition particle GTPase [Coprobacillus sp. 29_1] Length = 457 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 93/312 (29%), Positives = 161/312 (51%), Gaps = 30/312 (9%) Query: 20 GFASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 F S S +L++ + I ++ +D+ +RE + L+ +D+ V ++ + K Sbjct: 2 AFESLSERLQDSLKKIKGQATLTEANMDEMLRE-IRLALLEADVNFQVVKEFIANTKEKA 60 Query: 75 YAKDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 +DV V +V++D EL+ + +S+ DFS +P VI++VG+ G GKTT Sbjct: 61 LGQDVLGSLKPGQVVVKVVHD--ELVELLGTSVSE---LDFSRKPTVIMMVGLQGSGKTT 115 Query: 127 VIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAY 183 GK++K ++ K +L A D +R AA+DQLK + + E G+D +A + Sbjct: 116 TSGKIAKLITKKYAKKPLLVAADIYRPAAVDQLKTLGQQLNVPVF--EKGTDISAEDIVK 173 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A Q + DV+I+DTAGRLH + LM + + + P +L V+DA TGQ Sbjct: 174 QAMAYGQENQHDVIIVDTAGRLHIDEPLMQELQNIKEITN------PSEILLVVDALTGQ 227 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 + + + F+ TG ++TK+DG +RGGG + + +P+ F+G GE ++ ++ F Sbjct: 228 DIVNVAQSFNEHLSITGAVLTKLDGDSRGGGALSVRHITHVPIKFVGTGEKLDAIDLFYP 287 Query: 304 KDFSAVITGCLD 315 + I G D Sbjct: 288 DRMADRILGMGD 299 >gi|303327980|ref|ZP_07358419.1| signal recognition particle protein [Desulfovibrio sp. 3_1_syn3] gi|302861806|gb|EFL84741.1| signal recognition particle protein [Desulfovibrio sp. 3_1_syn3] Length = 506 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 88/268 (32%), Positives = 136/268 (50%), Gaps = 12/268 (4%) Query: 53 LIRSDIGVAVAQKIVEEL----LTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + VE + L + K VS Q+V+ V + + +L + N Sbjct: 38 LLEADVNFKVVKDFVESVREKCLGQETLKGVSPAQQVVKIVHDELVSLLGGETTGLNLQ- 96 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 P VI++VG+ G GKTT GK++ + ++ L D +R AAIDQL + A + Sbjct: 97 GREPAVIMLVGLQGSGKTTSAGKIANLLRRQKMRPYLVPADVYRPAAIDQLTVLAKQLDM 156 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 S +A A QA+ ++ VL++DTAGRLH + LM + + ++ Sbjct: 157 PCFPSTTEMKPVDIATAALAQAREEQATVLLLDTAGRLHVDEPLMEELSAIKAAVQ---- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V DA TGQ+A+ E F+ G TG+++TKMDG ARGG + I PV Sbjct: 213 --PQEILFVADAMTGQDAVTVAEAFNERLGLTGVVLTKMDGDARGGAALSIRSVTGAPVK 270 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+GVGE ++++E F + I G D Sbjct: 271 FVGVGEKLSEMEVFHPDRIAGRILGMGD 298 >gi|3334345|sp|Q00179|SRP54_ASPNG RecName: Full=Signal recognition particle 54 kDa protein homolog gi|598061|gb|AAB04946.1| srpA [Aspergillus niger] gi|134078502|emb|CAK40424.1| signal recognition particle 54K protein homolog srpA-Aspergillus niger gi|1586559|prf||2204256A srpA gene Length = 534 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 145/302 (48%), Gaps = 23/302 (7%) Query: 27 KLKEGITDIISSRRLD-----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTK 73 ++ + D+ S LD D + +E+ L+ +D+ V + Q + + + L Sbjct: 9 RINAAVNDLTRSNNLDEKQAFDDMIKEICAALLSADVNVRLVQSLRKSIKSSVNFASLPP 68 Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 K +Q+ ++D EL+ ++ P ++PF R +VI+ VG+ G GKTT KL++ Sbjct: 69 AVNKKRLIQKAVFD--ELV-SLVDPHAEPFRPK-KGRSNVIMFVGLQGAGKTTTCTKLAR 124 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 G K L DTFR+ A DQLK A + + S +D A +A E + + ++ Sbjct: 125 HYQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAIVAAEGVAKFKKER 184 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +++I+DT+GR L + ++ + P + VLD+T GQ A Q F Sbjct: 185 FEIIIVDTSGRHKQEEELFTEMTQIQTAV------TPDQTILVLDSTIGQAAEAQSSAFK 238 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 A A +I+TK DG A GGG I V P+ +LG GE + DLE F K F + G Sbjct: 239 ATADFGAIIITKTDGHAAGGGAISAVAATHTPIIYLGTGEHLMDLERFEPKAFIQKLLGM 298 Query: 314 LD 315 D Sbjct: 299 GD 300 >gi|237745294|ref|ZP_04575775.1| signal recognition particle, subunit FFH/SRP54 [Fusobacterium sp. 7_1] gi|229432523|gb|EEO42735.1| signal recognition particle, subunit FFH/SRP54 [Fusobacterium sp. 7_1] Length = 444 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 6/207 (2%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P +I++ G+ G GKTT KL+K + K++L D +R AAI QL++ + D Sbjct: 98 RNPTIIMLAGLQGAGKTTFAAKLAKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVD 157 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 E D +A A ++A+ +I+DTAGRLH + ILM + ++ + +K Sbjct: 158 VYSEENSKDVVGIATRAIEKAKEINATYMIVDTAGRLHVDEILMEELKELKKAIK----- 212 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P +L V+DA GQ+A+ E F+ G+I+TK+DG GG + I P+ F Sbjct: 213 -PQEILLVVDAMIGQDAVNLAESFNNALSVDGVILTKLDGDTHGGAALSIKAVVGKPIKF 271 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +GVGE +ND+E F + I G D Sbjct: 272 IGVGEKLNDIEIFHPDRLVSRILGMGD 298 >gi|15640582|ref|NP_230211.1| signal recognition particle protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|229509156|ref|ZP_04398641.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae B33] gi|229519634|ref|ZP_04409077.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae RC9] gi|229606151|ref|YP_002876799.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae MJ-1236] gi|254850797|ref|ZP_05240147.1| signal recognition particle protein [Vibrio cholerae MO10] gi|255744215|ref|ZP_05418168.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholera CIRS 101] gi|262147229|ref|ZP_06028031.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae INDRE 91/1] gi|9654990|gb|AAF93728.1| signal recognition particle protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|229344323|gb|EEO09298.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae RC9] gi|229353728|gb|EEO18664.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae B33] gi|229368806|gb|ACQ59229.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae MJ-1236] gi|254846502|gb|EET24916.1| signal recognition particle protein [Vibrio cholerae MO10] gi|255738155|gb|EET93547.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholera CIRS 101] gi|262031326|gb|EEY49938.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae INDRE 91/1] Length = 461 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 99/307 (32%), Positives = 154/307 (50%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E I + L ++ N + P VIL+ G+ G GKTT +G Sbjct: 60 VGVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KLSK + + K V++ + D +R AAI QL+ A+ DF S +A A Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DVLI+DTAGRL + +MA I + + + P L V+DA TGQ+A Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAADT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+I+TK+DG ARGG + + P+ F+GVGE + LEPF ++ Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|28899308|ref|NP_798913.1| signal recognition particle protein [Vibrio parahaemolyticus RIMD 2210633] gi|153838719|ref|ZP_01991386.1| signal recognition particle protein [Vibrio parahaemolyticus AQ3810] gi|156975746|ref|YP_001446653.1| hypothetical protein VIBHAR_03481 [Vibrio harveyi ATCC BAA-1116] gi|260879000|ref|ZP_05891355.1| signal recognition particle protein [Vibrio parahaemolyticus AN-5034] gi|260897214|ref|ZP_05905710.1| signal recognition particle protein [Vibrio parahaemolyticus Peru-466] gi|260900219|ref|ZP_05908614.1| signal recognition particle protein [Vibrio parahaemolyticus AQ4037] gi|28807532|dbj|BAC60797.1| signal recognition particle protein [Vibrio parahaemolyticus RIMD 2210633] gi|149747879|gb|EDM58757.1| signal recognition particle protein [Vibrio parahaemolyticus AQ3810] gi|156527340|gb|ABU72426.1| hypothetical protein VIBHAR_03481 [Vibrio harveyi ATCC BAA-1116] gi|308088451|gb|EFO38146.1| signal recognition particle protein [Vibrio parahaemolyticus Peru-466] gi|308089612|gb|EFO39307.1| signal recognition particle protein [Vibrio parahaemolyticus AN-5034] gi|308110287|gb|EFO47827.1| signal recognition particle protein [Vibrio parahaemolyticus AQ4037] gi|328474159|gb|EGF44964.1| signal recognition particle protein [Vibrio parahaemolyticus 10329] Length = 460 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 99/307 (32%), Positives = 152/307 (49%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D ++E L ++ L+ +D+ + V ++ V + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFVNRV--KEKA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E I + L ++ N + P V+L+ G+ G GKTT +G Sbjct: 60 VGVEVSKSLTPGQEFIKIVQAELEAVMGESNEALNL-AAQPPAVLLMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KLSK + + K V++ + D +R AAI QL+ A DF S +A A Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSPDQKPLDIANAAIDH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DVLI+DTAGRL + +M I + + P L V+DA TGQ+A Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEEMMGEIKDLHSAIN------PVETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+I+TK+DG ARGG + + P+ FLGVGE + LEPF ++ Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|2773023|gb|AAC08906.1| regulatory protein PilA [Neisseria meningitidis] Length = 144 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 65/143 (45%), Positives = 93/143 (65%), Gaps = 1/143 (0%) Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 PL KP + P VI++ G+NG GKTT IGKL+K G V+LAAGDTFR+AA +Q Sbjct: 2 PLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAHGKSVLLAAGDTFRAAAREQ 61 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ W +R + V S+ D+AA+ ++A + A+A+ +D+++ DTAGRL LM I K Sbjct: 62 LQAWGERNNVT-VISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKK 120 Query: 218 MIRVLKRLDPHAPHSVLQVLDAT 240 + RVL++ P APH ++ VLDA Sbjct: 121 VKRVLQKAMPDAPHEIIVVLDAN 143 >gi|36939157|gb|AAQ86949.1| regulatory protein PilA [Neisseria gonorrhoeae] Length = 311 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 67/196 (34%), Positives = 117/196 (59%), Gaps = 2/196 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G A + K+ + + + ++ + + EELE +LI D+G+ + +++++ Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 176 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W +R + V S+ D+AA+ ++A + A Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTAGDSAAVCFDAVQAA 294 Query: 190 QAKKVDVLIIDTAGRL 205 +A+ +D+++ DTAGRL Sbjct: 295 KARGIDIVLADTAGRL 310 >gi|320102219|ref|YP_004177810.1| signal recognition particle subunit FFH/SRP54 (srp54) [Isosphaera pallida ATCC 43644] gi|319749501|gb|ADV61261.1| signal recognition particle subunit FFH/SRP54 (srp54) [Isosphaera pallida ATCC 43644] Length = 495 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 84/286 (29%), Positives = 147/286 (51%), Gaps = 14/286 (4%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELI 92 +++ + + DG+RE + L+ +D+ + V Q + ++ +R + ++ + D + +++ Sbjct: 21 VLTEQNIQDGLRE-VRTALLEADVNLNVVQDFIAKV-KQRAVGEQIIKSIRPDQQIVKIV 78 Query: 93 HKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 H L+ L + P ++++ G+ G GKTT GKL++ ++ G K ML A D Sbjct: 79 HDELVALMGETDATIRFEKTGPTILMLCGLQGSGKTTTCGKLARMLALQGRKPMLVAADL 138 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 R AA++QLK + + V +E G + A D +I+DTAGRLH + Sbjct: 139 QRPAAVEQLKTLGQQLAIP-VHAETGVGPVQVCQNGVAAAAKAGCDTVILDTAGRLHIDD 197 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 LM + + + +K PH V V DA TGQ+A+ + F+ G+I+TK+DG Sbjct: 198 ELMEELKTIEKKVK------PHHVFFVCDAMTGQDAVASAKAFNEALELDGVILTKLDGD 251 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ARGG + I +P+ F+G+GE ++ L PF + + I G D Sbjct: 252 ARGGAALSIRQVTGVPIKFMGIGEKLDKLSPFDPRRIAGSILGMGD 297 >gi|269961270|ref|ZP_06175637.1| Signal recognition particle GTPase [Vibrio harveyi 1DA3] gi|269834031|gb|EEZ88123.1| Signal recognition particle GTPase [Vibrio harveyi 1DA3] Length = 462 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 96/305 (31%), Positives = 152/305 (49%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D ++E L ++ L+ +D+ + V ++ V + K Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFVNRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q + V + ++ ++ N + P V+L+ G+ G GKTT +GKL Sbjct: 62 VEVSKSLTPGQEFIKIVQAELEAVMGESNEALNL-AAQPPAVLLMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 SK + + K V++ + D +R AAI QL+ A DF S +A A A+ Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSPDQKPIDIANAAIDHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVLI+DTAGRL + +M I + + P L V+DA TGQ+A + Sbjct: 181 KKFYDVLIVDTAGRLAIDEEMMGEIKDLHSAIN------PVETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F TG+I+TK+DG ARGG + + P+ FLGVGE + LEPF ++ I Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|293374741|ref|ZP_06621049.1| signal recognition particle protein [Turicibacter sanguinis PC909] gi|325837601|ref|ZP_08166448.1| signal recognition particle protein [Turicibacter sp. HGF1] gi|292646655|gb|EFF64657.1| signal recognition particle protein [Turicibacter sanguinis PC909] gi|325490903|gb|EGC93202.1| signal recognition particle protein [Turicibacter sp. HGF1] Length = 475 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 155/307 (50%), Gaps = 19/307 (6%) Query: 20 GFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F + S +L+ + + +L D + E+ L+ +D+ + V ++ + E+ K Sbjct: 2 AFETLSERLQSALKSVTRKGKLTEKDVDVMMREVRLALLEADVNIKVVREFINEVKEKAV 61 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIG 129 + V Q+V+ V+E + K++ + N F H +P V ++VG+ G GKTT G Sbjct: 62 GEAVLKSLTPGQQVIKIVNEELTKLMGDSAAELN--FGHAKPAVFMMVGLQGAGKTTHTG 119 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 K+S + K +L A D +R AA+DQLK + + + +A EA Sbjct: 120 KISSYLRKKEKKNPLLVACDVYRPAAVDQLKTIGKQLNIPVYEKGTSMNPVDIAKEAMTY 179 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ D++IIDTAGRLH + LM + + ++ P +L V+DA TGQ+A+ Sbjct: 180 ARENGHDLVIIDTAGRLHIDEQLMDELKNIKELVN------PQEILLVVDAMTGQDAVNV 233 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + FH TG+++TK+DG RGG + I +P+ F+G+GE ++ LE F + ++ Sbjct: 234 AQSFHDQLDLTGVVLTKLDGDTRGGAALSIRKITNVPIKFIGLGEKLDTLEVFHPERMAS 293 Query: 309 VITGCLD 315 I G D Sbjct: 294 RILGMGD 300 >gi|260773522|ref|ZP_05882438.1| signal recognition particle subunit Ffh SRP54 [Vibrio metschnikovii CIP 69.14] gi|260612661|gb|EEX37864.1| signal recognition particle subunit Ffh SRP54 [Vibrio metschnikovii CIP 69.14] Length = 456 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 98/306 (32%), Positives = 154/306 (50%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVSRV--KESA 59 Query: 77 KDVSVQRVLYDVSELI----HKM--LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 V V + L E I H++ +M + + P +IL+ G+ G GKTT +GK Sbjct: 60 VGVEVSKSLTPGQEFIKIVRHELETVMGAANEALNLAAQPPAIILMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 LSK + + K V++ + D +R AAI QL+ A+ DF S +A A A Sbjct: 120 LSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSSADQKPIDIANAAVDHA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVLI+DTAGRL + ++MA I + + P L V+DA TGQ+A Sbjct: 180 KKKFYDVLIVDTAGRLAVDEVMMAEIKALHSAIN------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK+DG ARGG + + P+ FLGVGE + LE F ++ Sbjct: 234 KAFGDTLPLTGVILTKVDGDARGGAALSVRHVTGKPIKFLGVGEKTDALEAFHPDRVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|304315442|ref|YP_003850589.1| signal recognition particle protein Srp54 [Methanothermobacter marburgensis str. Marburg] gi|302588901|gb|ADL59276.1| signal recognition particle protein Srp54 [Methanothermobacter marburgensis str. Marburg] Length = 442 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 89/279 (31%), Positives = 143/279 (51%), Gaps = 18/279 (6%) Query: 45 VREELEDL---LIRSDIGVAV----AQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKML 96 V+E ++D+ LI+SD+ + + ++ I E L + K ++ + ++ V E + K+L Sbjct: 27 VKEVIKDIQRALIQSDVNIKLVFNLSKSIEERALNEEPPKGITPKEHIISIVYEEMVKLL 86 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 S + +P+ IL +G+ G GKTT IGKL++ + G V + DT+R AA + Sbjct: 87 GERSHELKIE--EKPYRILFLGLQGSGKTTTIGKLARYLRKKGFTVGVVCTDTWRPAAFE 144 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QLK + + DA LA + ++ Q K DV+I DTAGR L+ + Sbjct: 145 QLKQYTEGQDISVYGDPENKDALDLAEKGLERFQKK--DVIIFDTAGRHKEEKDLLREME 202 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 ++ V+K PH + V+D T GQ A Q F +I+TK+DG+A+GGG + Sbjct: 203 ELSAVIK------PHEAILVIDGTIGQQAREQALAFREATDIGSIIVTKLDGSAKGGGAL 256 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 V P+ F+G GE I+DLE F + F + + G D Sbjct: 257 SAVAEIGAPIRFIGTGERIDDLEVFDPERFISRLLGMGD 295 >gi|307151061|ref|YP_003886445.1| signal recognition particle protein [Cyanothece sp. PCC 7822] gi|306981289|gb|ADN13170.1| signal recognition particle protein [Cyanothece sp. PCC 7822] Length = 487 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 87/279 (31%), Positives = 143/279 (51%), Gaps = 25/279 (8%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85 D IS + D ++E + LI +D+ + V + + E+ + +V +++ Sbjct: 20 DKISQSNIQDALKE-VRRALISADVNLQVVKNFIAEVEKQALGAEVISGVNPGQQFIKIV 78 Query: 86 YD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 YD + +++ + +PL++ S P VIL+ G+ G GKTT KL+ + ++ Sbjct: 79 YDQLVKVMGESNVPLAQA-----STPPTVILMAGLQGTGKTTATAKLALFLRKENRSCLM 133 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIIDTA 202 A D +R AAIDQL + D E+G++A +A + ++A+ VD +IIDTA Sbjct: 134 VATDVYRPAAIDQLITLGQQI--DVPVFELGTEADPVEIARQGVQKAKELGVDTVIIDTA 191 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRL + +MA + ++ +K PH L V+D+ TGQ A FH G TG I Sbjct: 192 GRLQIDEDMMAELARIKATVK------PHDTLLVVDSMTGQEAATLTHTFHEQIGITGAI 245 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +TK+DG RGG + + P+ F+GVGE + L+PF Sbjct: 246 LTKLDGDTRGGAALSVRQVSGQPIKFVGVGEKVEALQPF 284 >gi|196247664|ref|ZP_03146366.1| signal recognition particle protein [Geobacillus sp. G11MC16] gi|196212448|gb|EDY07205.1| signal recognition particle protein [Geobacillus sp. G11MC16] Length = 433 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 114/206 (55%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT GKL+ + K +L A D +R AAI QL+ + + Sbjct: 88 PTVVMMVGLQGAGKTTTTGKLANLLRKRHNRKPLLVAADVYRPAAIKQLETLGKQLNMPV 147 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 ++ +A +A ++A+ + D ++IDTAGRLH + LM + +M +K Sbjct: 148 FSLGEHANPVEIAKQALERAKEEHHDYVLIDTAGRLHVDEALMDELKQMREAVK------ 201 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P + V+DA TGQ+A+ + FH G TG+I+TK+DG RGG + I P+ F+ Sbjct: 202 PDEIFLVVDAMTGQDAVNVAQSFHEQLGITGVILTKLDGDTRGGAALSIRAVTGAPIKFV 261 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+GE ++ LEPF + ++ I G D Sbjct: 262 GMGEKLDALEPFHPERMASRILGMGD 287 >gi|153216299|ref|ZP_01950389.1| signal recognition particle protein [Vibrio cholerae 1587] gi|124114341|gb|EAY33161.1| signal recognition particle protein [Vibrio cholerae 1587] Length = 459 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 98/307 (31%), Positives = 153/307 (49%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E I + L ++ N + P VIL+ G+ G GKTT +G Sbjct: 60 VGVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KLSK + + K ++ + D +R AAI QL+ A+ DF S +A A Sbjct: 119 KLSKLLKERDKKKALVVSADVYRPAAIKQLETLANDLGVDFFPSSPDQKPIDIANAAIDH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DVLI+DTAGRL + +MA I + + + P L V+DA TGQ+A Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+I+TK+DG ARGG + + P+ F+GVGE + LEPF ++ Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|138894717|ref|YP_001125170.1| Signal recognition particle subunit Ffh/SRP54 [Geobacillus thermodenitrificans NG80-2] gi|134266230|gb|ABO66425.1| Signal recognition particle, subunit Ffh/SRP54 [Geobacillus thermodenitrificans NG80-2] Length = 455 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 114/206 (55%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT GKL+ + K +L A D +R AAI QL+ + + Sbjct: 110 PTVVMMVGLQGAGKTTTTGKLANLLRKRHNRKPLLVAADVYRPAAIKQLETLGKQLNMPV 169 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 ++ +A +A ++A+ + D ++IDTAGRLH + LM + +M +K Sbjct: 170 FSLGEHANPVEIAKQALERAKEEHHDYVLIDTAGRLHVDEALMDELKQMREAVK------ 223 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P + V+DA TGQ+A+ + FH G TG+I+TK+DG RGG + I P+ F+ Sbjct: 224 PDEIFLVVDAMTGQDAVNVAQSFHEQLGITGVILTKLDGDTRGGAALSIRAVTGAPIKFV 283 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+GE ++ LEPF + ++ I G D Sbjct: 284 GMGEKLDALEPFHPERMASRILGMGD 309 >gi|158522321|ref|YP_001530191.1| signal recognition particle protein [Desulfococcus oleovorans Hxd3] gi|158511147|gb|ABW68114.1| signal recognition particle protein [Desulfococcus oleovorans Hxd3] Length = 443 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 86/288 (29%), Positives = 143/288 (49%), Gaps = 19/288 (6%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 ++ + +DDG++E + L+ +D+ + ++ + ++ + DV Q+V+ V E Sbjct: 22 LTEKNIDDGLKE-VRFALLEADVHYRIVKQFIADIRERAVGADVLESLTPGQQVIKIVYE 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + +++ + N P +++VG+ G GKTT KL+ + G K L D + Sbjct: 81 ELTRLMGETRQDLNLT-GQAPVSVMLVGLQGSGKTTTAAKLAVYLKKQGRKPFLVPADVY 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAIDQLK + S+ G + + +A AQ + + L++DTAGRLH + Sbjct: 140 RPAAIDQLKKLGSQVQVPVFASDPGMNPVDICRQARVAAQQQGCNTLLLDTAGRLHIDEA 199 Query: 211 LM---AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 LM GI + + +P +L V DA TGQ+A+ + F+ G+I++KMD Sbjct: 200 LMEELVGIKQAV---------SPSDILLVADAMTGQDAVNIAQSFNERLDIGGVILSKMD 250 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G ARGG + I P+ F+GVGE N LE F ++ I G D Sbjct: 251 GDARGGAALSIKAVTGRPIKFVGVGEKTNALEAFHPDRMASSILGMGD 298 >gi|163847609|ref|YP_001635653.1| signal recognition particle protein [Chloroflexus aurantiacus J-10-fl] gi|222525465|ref|YP_002569936.1| signal recognition particle protein [Chloroflexus sp. Y-400-fl] gi|163668898|gb|ABY35264.1| signal recognition particle protein [Chloroflexus aurantiacus J-10-fl] gi|222449344|gb|ACM53610.1| signal recognition particle protein [Chloroflexus sp. Y-400-fl] Length = 450 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 156/305 (51%), Gaps = 16/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L+ + S RL +D VRE ++ + L+ +D+ V ++ V ++ + Sbjct: 2 FESLSDRLQAVFQKLGSKGRLTEDDVREAMKQVRLALLEADVNFRVVKEFVAKVTEQAIG 61 Query: 77 KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLS 132 ++V+ + V +++H+ L+ L N P VI++VG+ G GKTT+ KL+ Sbjct: 62 EEVTKSLTPHQQVIKIVHQELINLLGTENVPLQEARPGPTVIMLVGLQGTGKTTLAAKLA 121 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 + G +V+L A D +R AAI QL+ + + + +A A + A+ + Sbjct: 122 LHLRKKGKRVLLVAADVYRPAAITQLQALGRQLNIPVYSEGTQASPPDIAEHALEHARKE 181 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 +V+IIDTAGRL + LM ++ ++ R+ P L V+DA TGQ A+R E F Sbjct: 182 LFNVVIIDTAGRLQIDEPLMQ---ELEQIENRVHPI---ERLLVVDAMTGQEAVRVAETF 235 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI--NDLEPFVAKDFSAVI 310 + TG++MTKMDG ARGG + + +P+ FL GE + N LE F ++ I Sbjct: 236 NQRVKLTGVVMTKMDGDARGGAALSVRAVTGVPIKFLSTGEKVDGNTLEVFHPDRLASRI 295 Query: 311 TGCLD 315 G D Sbjct: 296 LGMGD 300 >gi|58337566|ref|YP_194151.1| signal recognition protein Ffh [Lactobacillus acidophilus NCFM] gi|227904208|ref|ZP_04022013.1| Sec family type I general secretory pathway protein signal recognition particle protein [Lactobacillus acidophilus ATCC 4796] gi|58254883|gb|AAV43120.1| signal recognition protein Ffh [Lactobacillus acidophilus NCFM] gi|227868227|gb|EEJ75648.1| Sec family type I general secretory pathway protein signal recognition particle protein [Lactobacillus acidophilus ATCC 4796] Length = 476 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 87/269 (32%), Positives = 137/269 (50%), Gaps = 13/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + ++ + + K+V Q+V+ V+E + KM+ + P N Sbjct: 39 LLEADVNFKVVKDFIKTIKKEALGKEVQESLNPGQQVIKIVNEELTKMMGEEAVPLNKS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 H P +I++VG+ G GKTT +GKL+ + + +L AGD +R AA+DQLK ++ Sbjct: 98 KHIPTIIMMVGLQGTGKTTTVGKLAYHLQKTQKARPLLIAGDIYRPAAVDQLKQIGEQLK 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D A + + +A K D ++IDTAGRL + LM ++ RV K D Sbjct: 158 VPVFSENGEKDVAKIVQDGLAEADKNKNDYVLIDTAGRLEIDEPLME---ELERVKKVAD 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P ++L V+DA TGQ A + F TG+I+TK+DG RGG + I P+ Sbjct: 215 PD---NILLVVDAMTGQAATDVAKGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE ++DL+ F ++ I G D Sbjct: 272 LFTGQGEKLSDLDVFHPDRMASRILGMGD 300 >gi|238752941|ref|ZP_04614403.1| Signal recognition particle protein [Yersinia rohdei ATCC 43380] gi|238708849|gb|EEQ01105.1| Signal recognition particle protein [Yersinia rohdei ATCC 43380] Length = 453 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 79/209 (37%), Positives = 115/209 (55%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT + KL+K + + K V++ + D +R AAI QL+ A + Sbjct: 97 AQPPAVVLMAGLQGAGKTTSVAKLAKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQQVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 ADF S+ + A +QA+ K DVLI+DTAGRLH + +M I ++ +K Sbjct: 157 ADFFPSDAQEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I P+ Sbjct: 214 ---PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 FLGVGE LEPF ++ I G D Sbjct: 271 KFLGVGEKTEALEPFHPDRIASRILGMGD 299 >gi|115377135|ref|ZP_01464349.1| signal recognition particle [Stigmatella aurantiaca DW4/3-1] gi|115365844|gb|EAU64865.1| signal recognition particle [Stigmatella aurantiaca DW4/3-1] Length = 481 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 120/230 (52%), Gaps = 11/230 (4%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPHV----ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 ++ H L L P + +P I++VG+ G GKTT GKL+ ++ G K +L Sbjct: 23 KVCHDELEALMGPVDTSLKLKPRGQLSGIMMVGLQGSGKTTTTGKLANRLLQEGRKPLLV 82 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 A D +R AA+DQLK+ +R V E G LA + A+ +K DV++IDTAGRL Sbjct: 83 AADIYRPAAVDQLKVLGERLKVP-VYFEPGVAPPELAVRGYAAAREQKCDVVLIDTAGRL 141 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 + LMA + + + + H P ++L V DA GQ+A+R F G I+TK Sbjct: 142 AIDESLMAELESI-----KGNVH-PDNILLVCDAMIGQDAVRTAAEFDRRLTLDGFILTK 195 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +DG ARGG + I P+ FLG+GE ++ LE F + + I G D Sbjct: 196 LDGDARGGAALSIKEVTGKPIKFLGMGESMDKLEEFRPEGLAGRILGFGD 245 >gi|284053369|ref|ZP_06383579.1| signal recognition particle subunit FFH/SRP54 (srp54) [Arthrospira platensis str. Paraca] Length = 441 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 85/288 (29%), Positives = 148/288 (51%), Gaps = 15/288 (5%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-LTKRYAKDVSVQRVLYDVSELI 92 D I+ + + ++E + L+ +D+ + V + ++E+ + + ++ VS + +++ Sbjct: 20 DKITESNIQEALKE-VRRALLEADVNLMVVKDFIKEVGVQAQGSQVVSGVKPGQQFIKIV 78 Query: 93 HKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 H L+ + N + P ++L+ G+ G GKTT KL+ + +L A D Sbjct: 79 HDELVKVMGESNVPLAEAQQPPTIVLMAGLQGTGKTTASAKLALHLQKENRSSLLVATDV 138 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 +R AAIDQL + + E+G DA +A + + +A+ +D +IIDTAGRL Sbjct: 139 YRPAAIDQLMTLGKQINVPVF--ELGKDADPVEIARQGIEYGKAQGIDTIIIDTAGRLQI 196 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + +MA + ++ ++ PH L V+DA TGQ A + F+ G TG I+TKMD Sbjct: 197 DQNMMAELAQIKETVQ------PHETLLVVDAMTGQEAATLTQTFNDRIGITGAILTKMD 250 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G +RGG + I P+ F+GVGE + L+PF + ++ I G D Sbjct: 251 GDSRGGAALSIRRVSGAPIKFVGVGEKVEALQPFYPERMASRILGMGD 298 >gi|94501301|ref|ZP_01307822.1| Signal recognition particle protein [Oceanobacter sp. RED65] gi|94426572|gb|EAT11559.1| Signal recognition particle protein [Oceanobacter sp. RED65] Length = 471 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 73/192 (38%), Positives = 107/192 (55%), Gaps = 7/192 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT +GKL++ + + KVM+ + D +R AAI QL+ A A F Sbjct: 100 PAVILMAGLQGAGKTTTVGKLARYLKEREKKKVMVVSADVYRPAAIKQLETLASEVGAQF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S+ +A A K+A+ + DVLI+DTAGRL + +MA I + + + Sbjct: 160 FPSDEKQKPVDIANNAIKEAKTQFADVLIVDTAGRLAVDEDMMAEIQSLHKAID------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA TGQ+A + F TG+++TK DG ARGG + + P+ F+ Sbjct: 214 PVETLFVVDAMTGQDAANTAKAFSEALPLTGVVLTKADGDARGGAALSVRHVTGKPIKFM 273 Query: 290 GVGEGINDLEPF 301 G+GE + LEPF Sbjct: 274 GMGEKTDALEPF 285 >gi|1711514|sp|P49970|SR543_HORVU RecName: Full=Signal recognition particle 54 kDa protein 3; Short=SRP54 gi|1020004|gb|AAA79356.1| signal recognition particle 54 kDa subunit [Hordeum vulgare] Length = 493 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 73/200 (36%), Positives = 106/200 (53%), Gaps = 11/200 (5%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P+V++ VG+ G GKTT K + G K L DTFR+ A DQLK A + F Sbjct: 99 KPNVVMFVGLQGSGKTTTCTKYAHYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPF 158 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S + SD +A E ++ + +K D++IIDT+GR + L + ++ K Sbjct: 159 YGSYMESDPVKIAVEGLEKFRQEKSDLIIIDTSGRHMQEAALFEEMRQVAEATK------ 212 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P V+ V+D + GQ A Q + F A +I+TK+DG A+GGG + V K PV F+ Sbjct: 213 PDLVIFVMDGSIGQAAFDQAQAFKQSASVGAVIVTKLDGHAKGGGALSAVAATKSPVIFI 272 Query: 290 GVGEGINDL-----EPFVAK 304 G GE I+D EPFVA+ Sbjct: 273 GTGEHIDDFDVFNVEPFVAR 292 >gi|254284240|ref|ZP_04959208.1| signal recognition particle protein [gamma proteobacterium NOR51-B] gi|219680443|gb|EED36792.1| signal recognition particle protein [gamma proteobacterium NOR51-B] Length = 462 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 92/302 (30%), Positives = 148/302 (49%), Gaps = 21/302 (6%) Query: 23 STSLKLKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV 79 S SLK G SR +D +R+ L ++ L+ +D+ ++V ++ E + + +V Sbjct: 10 SASLKAMAG-----KSRLTEDNIRDTLREVRMALLEADVALSVVKEFTEAVKQRAVGAEV 64 Query: 80 SV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 + Q L V + + ++ N + + P V++V G+ G GKTT + KL++ Sbjct: 65 AQSLTPGQAFLKVVQSELEATMGSTNESLNLN-TQPPAVVMVAGLQGAGKTTSVAKLARH 123 Query: 135 MSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 + + KV + + D +R AAI QL+ A+ A F SE A+ A QA+ + Sbjct: 124 LIEREKKKVTVVSADVYRPAAIKQLETLANEVGARFEPSEEHEQPVAIVQRALAQAKIQF 183 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 DVL++DTAGRL + +M+ I + + P L V+DA TGQ+A F Sbjct: 184 SDVLLVDTAGRLAIDEAMMSEIKALHSAIN------PIETLFVVDAMTGQDAANTANAFG 237 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 A TG+I+TK+D RGG + + P+ FLGVGE L+PF ++ I G Sbjct: 238 AALPLTGVILTKVDADTRGGAALSVRAITGKPIKFLGVGEKTEALDPFHPDRLASRILGM 297 Query: 314 LD 315 D Sbjct: 298 GD 299 >gi|87125498|ref|ZP_01081343.1| Signal recognition particle protein [Synechococcus sp. RS9917] gi|86166798|gb|EAQ68060.1| Signal recognition particle protein [Synechococcus sp. RS9917] Length = 492 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 83/280 (29%), Positives = 141/280 (50%), Gaps = 16/280 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPLS 100 +G +E+ L+ +D+ + V + V E+ K DV V+ + D +++H L+ + Sbjct: 28 EGALKEVRRALLEADVSLPVVKDFVAEVRQKAVGADV-VRGISPDQKFIQVVHDQLVEVM 86 Query: 101 KPFNWDFS---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 N + P V+L+ G+ G GKTT KL + D G + ++ D +R AAIDQ Sbjct: 87 GGGNAPLARAEQAPTVVLMAGLQGAGKTTATAKLGLYLKDQGRRALMVGADVYRPAAIDQ 146 Query: 158 LKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 L+ ++ + +G++A +A +A+ + D L++DTAGRL + +M Sbjct: 147 LRTLGEQIGVEVFS--LGAEAKPEDIASAGLAKARQEGFDTLLVDTAGRLQIDQSMM--- 201 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 +M+R+ + P VL V+D+ GQ A FH G TG ++TK+DG +RGG Sbjct: 202 DEMVRIRSAVQ---PDEVLLVVDSMIGQEAAELTRAFHEQVGITGAVLTKLDGDSRGGAA 258 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+G GE + L+PF + ++ I G D Sbjct: 259 LSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRILGMGD 298 >gi|84490317|ref|YP_448549.1| signal recognition particle protein Srp54 [Methanosphaera stadtmanae DSM 3091] gi|121731822|sp|Q2NE47|SRP54_METST RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|84373636|gb|ABC57906.1| signal recognition particle, 54 kDa protein [Methanosphaera stadtmanae DSM 3091] Length = 444 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 85/289 (29%), Positives = 145/289 (50%), Gaps = 21/289 (7%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVA--------QKIVEELLTKRYAKDVSVQRVLY 86 II + L D V ++++ LI+SD+ V V ++ +EE L K + V R++Y Sbjct: 21 IIDKKTLKD-VTKDIQRALIQSDVNVKVVFGLTKKIEKRALEEELPKGLSPKEHVMRIVY 79 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 EL++ + KP + +P+ I+++G+ G GKTT KL K + G + Sbjct: 80 --QELVN---LIGEKPEELKINRKPYKIMMLGLQGSGKTTTTAKLVKHLKKKGHTSAIVC 134 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 DT+R AA +QL+ + DA LA + ++ K DV+++DTAGR Sbjct: 135 TDTWRPAAYEQLRQLTEPLDVPVFGDPENKDAIDLAKKGLEKC-GSKYDVILVDTAGRHK 193 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 L+ + ++ ++++ P V+ V+D T GQ A Q E F +I++K+ Sbjct: 194 EEKDLLDEMAELSQIVQ------PDEVILVIDGTIGQQARSQAETFKKTTDIGSIIVSKL 247 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG+A+GGG + V + P+ F+G GE ++D E F + F + + G D Sbjct: 248 DGSAKGGGALSAVAEIRAPIKFIGTGERVDDFEAFDPERFISRLLGMGD 296 >gi|332993927|gb|AEF03982.1| signal recognition particle protein [Alteromonas sp. SN2] Length = 476 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 157/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + ++ RL +D ++E L ++ L+ +D+ + V + V ++ + Sbjct: 2 FENLSERLGQTLRNVSGKGRLTEDNIKETLREVRMALLEADVALPVIKSFVAQVKERAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V + ++ ++ N + P VIL+ G+ G GKTT + KL Sbjct: 62 TEVTKSLKPGQIFIKIVQSELEAVMGEANEKLNL-ATQPPAVILMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K +++ KVM+ + D +R AAI QL+ A + F S I + A +A+ Sbjct: 121 AKYLTEREKKKVMVVSADVYRPAAIKQLETLASEVNVAFHPSTILQTPIHIVEGAIDEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DVL++DTAGRLH +S +M I + +K P L V+DA TGQ+A + Sbjct: 181 KNFFDVLLVDTAGRLHVDSDMMTEIKDLHAAVK------PIETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK DG ARGG + + P+ F+G+GE ++ LEPF + ++ I Sbjct: 235 AFNDALPLTGVILTKADGDARGGAALSVRHITGKPIKFIGMGEKVDALEPFHPERIASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|322435167|ref|YP_004217379.1| signal recognition particle protein [Acidobacterium sp. MP5ACTX9] gi|321162894|gb|ADW68599.1| signal recognition particle protein [Acidobacterium sp. MP5ACTX9] Length = 465 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 89/277 (32%), Positives = 141/277 (50%), Gaps = 18/277 (6%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHK 94 I+ + D +RE + L+ SD+ + V + +VE + K V+ + + +++H Sbjct: 22 ITEENISDAMRE-IRLALLESDVNLEVVKDLVEHIRVKAMGTQVTTALSPSEQIVKIVHD 80 Query: 95 MLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 L+ L F S P V+L+ G+ G GKTT KL++ + G + ML + D +R Sbjct: 81 ELVTLLGKDIAKFRTASQPPSVVLMAGLQGSGKTTTSAKLAQWLKKGGHRPMLVSVDVYR 140 Query: 152 SAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYEAFKQAQAKKVDVLIIDTAGR 204 AA QL + A T + ++ + LA EA K+A D+LI+DTAGR Sbjct: 141 PAARAQLAVVAKSTGVNLYEGKLDESVQNGTPEVLRLAKEAKKEAANFGCDILIVDTAGR 200 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 L +++LM + ++ ++L P +L V DA TGQ+A+ + F+ + TG I+T Sbjct: 201 LGIDAVLMDEMAELKKLLN------PSEILFVADAMTGQDAVNSAKAFNDLLTITGAILT 254 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 KMDG ARGG + I P+ FLG GE + EPF Sbjct: 255 KMDGDARGGAALSIRQVTGAPIKFLGTGEKPDAFEPF 291 >gi|302506196|ref|XP_003015055.1| hypothetical protein ARB_06815 [Arthroderma benhamiae CBS 112371] gi|291178626|gb|EFE34415.1| hypothetical protein ARB_06815 [Arthroderma benhamiae CBS 112371] Length = 504 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 122/235 (51%), Gaps = 10/235 (4%) Query: 81 VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140 +Q+ ++D +L+ ++ P ++PF + +VI++VG+ G GKTT KL++ G Sbjct: 45 IQKAVFD--QLV-ALVDPHAEPFKPK-KGKSNVIMMVGLQGAGKTTTCTKLARHYQTKGF 100 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 K L DTFR+ A DQLK A + + S +D ++ E + + ++ D++I+D Sbjct: 101 KAALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPVVVSSEGVAKFKKERFDIIIVD 160 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 T+GR L A + ++ +K P + VLD+T GQ A Q F + A Sbjct: 161 TSGRHRQEEDLFAEMTQIQSAIK------PDQTIMVLDSTIGQAAETQSAAFKSAADFGA 214 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK DG A GGG I V + P+ FLG GE + DLE F + F + G D Sbjct: 215 IIITKTDGHAAGGGAISAVAATRTPIIFLGTGEHMLDLERFAPRPFVQKLLGMGD 269 >gi|291567513|dbj|BAI89785.1| signal recognition particle protein [Arthrospira platensis NIES-39] Length = 470 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 85/288 (29%), Positives = 148/288 (51%), Gaps = 15/288 (5%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-LTKRYAKDVSVQRVLYDVSELI 92 D I+ + + ++E + L+ +D+ + V + ++E+ + + ++ VS + +++ Sbjct: 20 DKITESNIQEALKE-VRRALLEADVNLMVVKDFIKEVGVQAQGSQVVSGVKPGQQFIKIV 78 Query: 93 HKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 H L+ + N + P ++L+ G+ G GKTT KL+ + +L A D Sbjct: 79 HDELVKVMGESNVPLAEAQQPPTIVLMAGLQGTGKTTASAKLALHLQKENRSSLLVATDV 138 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 +R AAIDQL + + E+G DA +A + + +A+ +D +IIDTAGRL Sbjct: 139 YRPAAIDQLMTLGKQINVPVF--ELGKDADPVEIARQGIEYGKAQGIDTIIIDTAGRLQI 196 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + +MA + ++ ++ PH L V+DA TGQ A + F+ G TG I+TKMD Sbjct: 197 DQNMMAELAQIKETVQ------PHETLLVVDAMTGQEAATLTQTFNDRIGITGAILTKMD 250 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G +RGG + I P+ F+GVGE + L+PF + ++ I G D Sbjct: 251 GDSRGGAALSIRRVSGAPIKFVGVGEKVEALQPFYPERMASRILGMGD 298 >gi|169830839|ref|YP_001716821.1| signal recognition particle protein [Candidatus Desulforudis audaxviator MP104C] gi|169637683|gb|ACA59189.1| signal recognition particle protein [Candidatus Desulforudis audaxviator MP104C] Length = 452 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 74/205 (36%), Positives = 112/205 (54%), Gaps = 7/205 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P V+++VG+ G GKTT + KL+ + G + +L A D +R AAI QL++ + V Sbjct: 101 PTVVMLVGLQGSGKTTTVAKLANLLKKQGRRPLLVAADVYRPAAIKQLQVLGGQIDVP-V 159 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 S D ++A A + + DV+IIDTAGRLH N LM + ++ ++ P Sbjct: 160 FSMGEQDPVSIAGAALESTRKGGQDVVIIDTAGRLHINEELMVELERIKAGVQ------P 213 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 H +L V+DA TGQ+A+ E FH G+I+TK+DG RGG + + P+ F+G Sbjct: 214 HEILLVVDAMTGQDAVTVAESFHQRLVLDGVILTKLDGDTRGGAALSVRAVTGCPIKFVG 273 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 +GE ++ LEPF + I G D Sbjct: 274 IGEKLDALEPFHPNRMADRILGMGD 298 >gi|190347110|gb|EDK39324.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC 6260] Length = 560 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 109/204 (53%), Gaps = 6/204 (2%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 H+I+ VG+ G GKTT KL+ G KV L DTFR+ A DQLK A ++S + Sbjct: 134 HIIMFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNATKSSIPYYG 193 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 S + +D +A+E + + +K D++I+DT+GR L +M+++ + + P Sbjct: 194 SYLETDPVKVAHEGVVKFRKEKFDIIIVDTSGRHKQEQSL---FDEMVQISEAVQ---PT 247 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 + V+D + GQ A Q F + +I+TKMDG A+GGG I V + P+ F+G Sbjct: 248 QTIMVMDGSIGQAAESQARAFKETSDFGSIILTKMDGHAKGGGAISAVAATQTPIVFIGT 307 Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315 GE + DLE F F + + G D Sbjct: 308 GEHVGDLETFRPSAFISKLLGIGD 331 >gi|254414856|ref|ZP_05028620.1| signal recognition particle protein [Microcoleus chthonoplastes PCC 7420] gi|196178345|gb|EDX73345.1| signal recognition particle protein [Microcoleus chthonoplastes PCC 7420] Length = 486 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 94/295 (31%), Positives = 148/295 (50%), Gaps = 29/295 (9%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85 D IS + D ++E + L+ +D+ + V +K V ++ T DV +++ Sbjct: 20 DKISQANIQDALKE-VRRALLSADVNLQVVKKFVADVETTAMGADVIAGVRPDQQFIKIV 78 Query: 86 YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 YD EL+ M +PL+K D S P ++L+ G+ G GKTT KL+ + Sbjct: 79 YD--ELVQVMGESNVPLAKA---DTS--PTIVLMAGLQGTGKTTATAKLALHLGKENRSC 131 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIID 200 ++ A D +R AAIDQL ++ + E+G+D +A + A+ VD +IID Sbjct: 132 LMVATDVYRPAAIDQLVTLGEQI--NIPVFEMGTDTNPVEIACQGVAHAKETGVDTVIID 189 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL ++ +MA + ++ +K P VL V+DA TGQ A F+ G TG Sbjct: 190 TAGRLQIDAEMMAELAQIKDNVK------PDEVLLVVDAMTGQEAATLTHTFNQQIGITG 243 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I+TK+DG RGG + + P+ F+GVGE + L+PF ++ I G D Sbjct: 244 AILTKLDGDTRGGAALSVRQVSGQPIKFVGVGEKVEALQPFYPDRMASRILGMGD 298 >gi|145341290|ref|XP_001415746.1| IISP family transporter: signal recognition particle protein (SRP54) [Ostreococcus lucimarinus CCE9901] gi|144575969|gb|ABO94038.1| IISP family transporter: signal recognition particle protein (SRP54) [Ostreococcus lucimarinus CCE9901] Length = 498 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 150/305 (49%), Gaps = 16/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRLD-DGVREELEDL---LIRSDIGVAVAQKIV----EELLT 72 FA S KL + + + L+ D V+ L+D+ L+ +D+ + V ++ + E+ + Sbjct: 7 FAGMSDKLDKAWARLQGEKDLNADNVKAPLKDVRRALLEADVSLPVVRRFIARCEEKAVG 66 Query: 73 KRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + K V ++L EL M ++ + P V+L+ G+ GVGKTT GK Sbjct: 67 MKVTKGVEPGQMLVKCVADELCELMGGVGAEGIKFRDDGEPTVVLMAGLQGVGKTTACGK 126 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 LS + G V+L A D +R AAIDQLK + + + +A ++A+ Sbjct: 127 LSLALRKQGKSVLLVATDVYRPAAIDQLKTLGKQIGVPVFDMGVDGNPPEIAARGVRKAK 186 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + +DV+I+DTAGRL+ + LM ++ K + + L V+DA TGQ A Sbjct: 187 DEDIDVVIVDTAGRLNIDEKLMG----ELKATK--EATSADETLLVVDAMTGQEAATLTA 240 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG I+TKMDG RGG + + P+ F GVGE ++ LEPF + ++ I Sbjct: 241 SFNEAVEITGAILTKMDGDTRGGAALSVREVSGKPIKFTGVGEKMDALEPFYPERMTSRI 300 Query: 311 TGCLD 315 G D Sbjct: 301 LGMGD 305 >gi|157960876|ref|YP_001500910.1| signal recognition particle protein [Shewanella pealeana ATCC 700345] gi|157845876|gb|ABV86375.1| signal recognition particle protein [Shewanella pealeana ATCC 700345] Length = 457 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 155/305 (50%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL ++ V+E L ++ L+ +D+ + V ++ V + + Sbjct: 2 FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNSVKERAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++VS Q + V + + ++ + + P VI++ G+ G GKTT + KL Sbjct: 62 QEVSKSLSPGQAFIKIVQSELENAMGEANEALDLS-AQPPAVIMMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 SK + + K V++ + D +R AAI QL+ A F S++ +A A A+ Sbjct: 121 SKFLREREKKSVLVVSADVYRPAAIKQLETLAAEVDVQFFPSDVSQKPVDIANAAIAHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K +DV+I+DTAGRLH + +M I ++ +K P L V+DA TGQ+A + Sbjct: 181 LKFIDVVIVDTAGRLHVDEAMMDEIKELHAAVK------PVETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+++TK+DG ARGG + I P+ FLGVGE + LE F ++ I Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEAFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|226325149|ref|ZP_03800667.1| hypothetical protein COPCOM_02941 [Coprococcus comes ATCC 27758] gi|225206497|gb|EEG88851.1| hypothetical protein COPCOM_02941 [Coprococcus comes ATCC 27758] Length = 454 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 88/304 (28%), Positives = 154/304 (50%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S + KL+ ++ S RL +D V+ L ++ L+ +D+ V + V+ + + Sbjct: 3 FDSLTEKLQNVFKNLRSKGRLTEDDVKAALREVKMALLEADVNFKVVKNFVKSVQERAVG 62 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V++ + ++ + + + VI+++G+ G GKTT KL Sbjct: 63 QDVMSGLNPGQMVIKIVNDELVNLMGSETTEIKFQPGSQKTVIMMMGLQGAGKTTTTAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K G K +L A D +R AAI QL+I ++ + A +A A + A+ Sbjct: 123 AGKFKLKGKKPLLVACDVYRPAAIKQLQINGEKQGVEVFSMGDNQKPANIAKAALEHAEK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +V+I+DTAGRLH + +M + ++ ++ H + V+DA TGQ+A+ E Sbjct: 183 NGNNVIILDTAGRLHIDEEMMEELQEIKNTVE------VHQSILVVDAMTGQDAVNVAEN 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G G+I+TK+DG RGG + I P+ ++G+GE ++DLE F ++ I Sbjct: 237 FNEKIGIDGVIVTKLDGDTRGGAALSIKAVTGCPILYVGMGEKLSDLEQFYPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|56419731|ref|YP_147049.1| signal recognition particle GTPase [Geobacillus kaustophilus HTA426] gi|297530628|ref|YP_003671903.1| signal recognition particle protein [Geobacillus sp. C56-T3] gi|319766210|ref|YP_004131711.1| signal recognition particle protein [Geobacillus sp. Y412MC52] gi|56379573|dbj|BAD75481.1| signal recognition particle GTPase [Geobacillus kaustophilus HTA426] gi|297253880|gb|ADI27326.1| signal recognition particle protein [Geobacillus sp. C56-T3] gi|317111076|gb|ADU93568.1| signal recognition particle protein [Geobacillus sp. Y412MC52] Length = 446 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 112/206 (54%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT GKL+ + K +L A D +R AAI QL+ + Sbjct: 101 PTVVMMVGLQGAGKTTTTGKLANLLRKRHNRKPLLVAADVYRPAAIKQLETLGKQLDMPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 ++ +A +A ++A+ + D ++IDTAGRLH + LM + +M +K Sbjct: 161 FSLGEHANPVEIAKQALERAKEEHYDYVLIDTAGRLHIDEALMDELKQMKEAVK------ 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P + V+DA TGQ+A+ + FH G TG+I+TK+DG RGG + I P+ F Sbjct: 215 PDEIFLVVDAMTGQDAVNVAQSFHEQLGITGVILTKLDGDTRGGAALSIRAVTGAPIKFA 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+GE ++ LEPF + ++ I G D Sbjct: 275 GMGEKLDALEPFHPERMASRILGMGD 300 >gi|326487934|dbj|BAJ89806.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326495310|dbj|BAJ85751.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 554 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 91/309 (29%), Positives = 156/309 (50%), Gaps = 23/309 (7%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +LT G S KL+ G+ D+++ + + +R+ + L+ +D+ + V ++ V + K Sbjct: 74 QLTTGLESAWNKLR-GV-DVLTKETIVEPMRD-IRRALLEADVSLPVVRRFVSSVSEKAL 130 Query: 76 AKDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126 DV + ++++D EL+ M +S + F+ P VIL+ G+ GVGKTT Sbjct: 131 GSDVIRGIRPEQQLVKIVHD--ELVQLMGGEVS---DLVFAKTGPTVILLAGLQGVGKTT 185 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 V KL+ + G ML A D +R AAIDQL + ++ + A + A Sbjct: 186 VCAKLAFYLKKLGKSCMLVAADVYRPAAIDQLTVLGEQVGVPVYSEGTTAKPAEITKNAM 245 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 ++A+ +D +++DTAGRL + +M + ++ + + P +L V+DA TGQ A Sbjct: 246 EEAKRNNIDAIVVDTAGRLQIDKTMMVELKEVKKSVN------PTEILLVVDAMTGQEAA 299 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 V F+ G +G I+TK+DG +RGG + + P+ F+G GE + DLE F Sbjct: 300 ALVTTFNIEIGISGAILTKLDGDSRGGAALSVKEVSGKPIKFVGRGERMEDLELFYPDRM 359 Query: 307 SAVITGCLD 315 + + G D Sbjct: 360 AQRVLGMGD 368 >gi|289596592|ref|YP_003483288.1| GTP-binding signal recognition particle SRP54 G- domain protein [Aciduliprofundum boonei T469] gi|289534379|gb|ADD08726.1| GTP-binding signal recognition particle SRP54 G- domain protein [Aciduliprofundum boonei T469] Length = 449 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 102/313 (32%), Positives = 158/313 (50%), Gaps = 33/313 (10%) Query: 9 ESL-SWIRKLTK-GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 ESL + IRK++K G+ SL +KE + DI + L+R+D+ V +A K+ Sbjct: 7 ESLRNTIRKISKAGYVDESL-IKEVVRDI--------------QRALLRADVEVHLALKL 51 Query: 67 VEEL----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + + L ++ +S + L + + +++ L K + + +P +++VG+ G Sbjct: 52 SKNVERRALEEKPPSGMSHRDFLIKI--IYEELVAILGK--EKEVALKPQKLMLVGLYGQ 107 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT GKL++ GL V L A D R AA +QLK ++ + DA +A Sbjct: 108 GKTTTAGKLARYFHKKGLSVALIACDVHRPAAYEQLKQIGEQLNVPVFGIPGEKDARKIA 167 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 EA K+ K V I DT+GR L+ I + +++ P + VLDAT G Sbjct: 168 REAVKKM--KDYQVQIFDTSGRHALEDDLIEEIKDLKEIIQ------PDEIFLVLDATIG 219 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 Q A +Q + FH G TG+I+TKMDG+A+GGG + V PV F+G GE + DLE F Sbjct: 220 QQAGKQAKAFHDAVGVTGVIITKMDGSAKGGGALSAVAATGAPVVFIGTGEHLEDLEHFN 279 Query: 303 AKDFSAVITGCLD 315 F + + G D Sbjct: 280 PTRFISRLLGMGD 292 >gi|114321087|ref|YP_742770.1| signal recognition particle subunit FFH/SRP54 (srp54) [Alkalilimnicola ehrlichii MLHE-1] gi|114227481|gb|ABI57280.1| signal recognition particle subunit FFH/SRP54 (srp54) [Alkalilimnicola ehrlichii MLHE-1] Length = 456 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 111/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+L+ G+ G GKTT KL++ +++ KV++ + D +R AAI+QL+ AD ++ Sbjct: 100 PAVVLLAGLQGSGKTTSTAKLARYLTEREKKKVLVVSCDIYRPAAIEQLRTLADEVGVEW 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A A A+ + DVL++DTAGRLH + LM + ++ + + Sbjct: 160 FPSAADQDPERIARAALDHARKQFFDVLLVDTAGRLHIDQDLMDEVQRLHKAV------T 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+D+ TGQ+A FH TG+I+TK DG ARGG + I P+ FL Sbjct: 214 PVETLFVVDSMTGQDAANTARAFHDALPLTGVILTKTDGDARGGAALSIRHITGKPIKFL 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE LEPF ++ I G D Sbjct: 274 GVGEKTTALEPFHPDRVASRILGMGD 299 >gi|27573183|gb|AAO19991.1| regulatory protein PilA [Neisseria gonorrhoeae] Length = 311 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 66/196 (33%), Positives = 116/196 (59%), Gaps = 2/196 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G A + K+ + + + ++ + + EELE +LI D+G+ + +++++ Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 176 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W +R + + G D+AA+ ++A + A Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTG-DSAAVCFDAVQAA 294 Query: 190 QAKKVDVLIIDTAGRL 205 +A+ +D+++ DTAGRL Sbjct: 295 KARGIDIVLADTAGRL 310 >gi|307823514|ref|ZP_07653743.1| signal recognition particle protein [Methylobacter tundripaludum SV96] gi|307735499|gb|EFO06347.1| signal recognition particle protein [Methylobacter tundripaludum SV96] Length = 464 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 78/209 (37%), Positives = 115/209 (55%), Gaps = 13/209 (6%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +IL+ G+ G GKTT + KL + + + KV + + D +R AAI QL++ A+ S DF Sbjct: 111 PAIILMAGLQGAGKTTTVAKLGRWLKENQKKKVGVVSADVYRPAAIKQLQMLANELSLDF 170 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S+I +A A + A+ K +DV+IIDTAGRLH + +M I ++ HA Sbjct: 171 FESDISQKPVDIAKNAIEAAKKKFLDVIIIDTAGRLHIDDEMMGEIKEL---------HA 221 Query: 230 ---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+D+ TGQ+A + F+ TG+I+TK DG ARGG + I P+ Sbjct: 222 AINPVETLFVVDSMTGQDAAITAKAFNDALPLTGIILTKADGDARGGAALSIRHITGKPI 281 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE + LEPF ++ I G D Sbjct: 282 KFIGMGEKTDALEPFYPDRIASRILGMGD 310 >gi|167756882|ref|ZP_02429009.1| hypothetical protein CLORAM_02431 [Clostridium ramosum DSM 1402] gi|237734592|ref|ZP_04565073.1| signal recognition particle GTPase [Mollicutes bacterium D7] gi|167703057|gb|EDS17636.1| hypothetical protein CLORAM_02431 [Clostridium ramosum DSM 1402] gi|229382412|gb|EEO32503.1| signal recognition particle GTPase [Coprobacillus sp. D7] Length = 464 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 151/303 (49%), Gaps = 14/303 (4%) Query: 21 FASTSLKLKEGITDIISSRRLDDGVREELED----LLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L+ + + RL + EE+ L+ +D+ V ++ + K Sbjct: 3 FDSLSERLQGTLKKVSGQGRLTEKNMEEMLSEIRLALLEADVNFQVVKEFIAATKEKALG 62 Query: 77 KDV-SVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 +DV + V +++H L+ L + DF +P VI++VG+ G GKTT GK++K Sbjct: 63 QDVLGSLKPGQVVVKIVHDELVSLLGTSVAEVDFDKKPTVIMMVGLQGSGKTTTSGKIAK 122 Query: 134 KMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 ++ G K +L A D +R AA+DQLK ++ + A ++ EA A+ Sbjct: 123 LITKKYGKKPLLVAADIYRPAAVDQLKTLGEQLNVPVYEKGTSQSAESIVEEAMTFARDH 182 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 DV+IIDTAGRLH + LM + + ++ P +L V+DA TGQ+ + F Sbjct: 183 NNDVIIIDTAGRLHIDEPLMNELANIKKI------AHPSEILLVVDALTGQDIVNVASSF 236 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + TG ++TK+DG +RGGG + I +P+ F+G GE ++ ++ F + I G Sbjct: 237 NEQLSITGAVLTKLDGDSRGGGALSIRHITNVPIKFIGTGEKLDAIDLFYPDRMADRILG 296 Query: 313 CLD 315 D Sbjct: 297 MGD 299 >gi|260663573|ref|ZP_05864463.1| signal recognition particle protein [Lactobacillus fermentum 28-3-CHN] gi|260552114|gb|EEX25167.1| signal recognition particle protein [Lactobacillus fermentum 28-3-CHN] Length = 484 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 88/282 (31%), Positives = 148/282 (52%), Gaps = 20/282 (7%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML 96 +RE + ++ L+ +D+ V + V+ + K +V Q+++ V++ + +M+ Sbjct: 36 LRETMREIRLALLEADVNFKVVKDFVKTVREKAAGAEVLKGLNPAQQIVKIVNDELTEMM 95 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAI 155 + P N +H P VI++VG+ G GKTT GKL+K++ + + + A D +R AAI Sbjct: 96 GETATPLNKS-AHIPTVIMMVGLQGAGKTTTAGKLAKRLKKEENARPLFIAADVYRPAAI 154 Query: 156 DQLKIWADRTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 QL+ A S D E+G+D + + + A+ K D +IIDTAGRL + LM Sbjct: 155 TQLQQVA--ASIDVPVFEMGTDVDPVEIVRQGMEVAKEKHNDYVIIDTAGRLQIDEQLME 212 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + K+ + K P +L V+DA TGQNA+ + F TG+++TK+DG RGG Sbjct: 213 ELAKIKELAK------PDEILLVVDAMTGQNAVNTAQGFDDQLDITGVVLTKLDGDTRGG 266 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+G GE +++L+ F ++ I G D Sbjct: 267 AAMSIRAVTGKPIKFVGEGEKMDNLDVFHPDRMASRILGMGD 308 >gi|271501692|ref|YP_003334718.1| signal recognition particle protein [Dickeya dadantii Ech586] gi|270345247|gb|ACZ78012.1| signal recognition particle protein [Dickeya dadantii Ech586] Length = 453 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 78/212 (36%), Positives = 112/212 (52%), Gaps = 13/212 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT + KL K + + KV++ + D +R AAI QL+ A Sbjct: 97 AQPPAVVLMAGLQGAGKTTSVAKLGKFLREKQKKKVLVVSADVYRPAAIKQLETLAQTVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S+ + A + A+ K DVL++DTAGRLH + +M I ++ Sbjct: 157 VDFFPSDANEKPVDIVNRALQHAKLKFYDVLLVDTAGRLHVDDAMMDEIKQV-------- 208 Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 HA P L V+DA TGQ+A + F+ TG+I+TK+DG ARGG + I Sbjct: 209 -HASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVILTKIDGDARGGAALSIRHITG 267 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ FLGVGE + LEPF ++ I G D Sbjct: 268 KPIKFLGVGEKTDALEPFYPDRIASRILGMGD 299 >gi|163743789|ref|ZP_02151162.1| signal recognition particle protein [Phaeobacter gallaeciensis 2.10] gi|161382938|gb|EDQ07334.1| signal recognition particle protein [Phaeobacter gallaeciensis 2.10] Length = 507 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 83/269 (30%), Positives = 139/269 (51%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA+ V+ + + + V+ Q+V+ V + + +L P Sbjct: 38 LLEADVSLPVARDFVKRVQEQATGQAVTKSVTPGQQVVKIVHDALVDVLRGAEDPGQLKV 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P IL+VG+ G GKTT GKL+K++ D G +V++A+ D +R AA+DQL + + Sbjct: 98 DNPPAPILMVGLQGSGKTTTTGKLAKRLKDKDGKRVLMASLDVYRPAAMDQLAVLGTQIG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G +A A +QA DV ++DTAGRL + +LM + + V+ Sbjct: 158 VDTLPIVPGQKPVDIAKRAKQQAALGGYDVYMLDTAGRLQIDEVLMQEVEDVRDVV---- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 +P L V+D TGQ A+ E F A G +G+++T+MDG RGG + + P+ Sbjct: 214 --SPRETLLVVDGLTGQVAVEVAEEFDAKIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ +E F + I G D Sbjct: 272 RFVGLGEKMDAIETFEPDRIAGRILGMGD 300 >gi|82703253|ref|YP_412819.1| signal recognition particle protein [Nitrosospira multiformis ATCC 25196] gi|82411318|gb|ABB75427.1| signal recognition particle subunit FFH/SRP54 (srp54) [Nitrosospira multiformis ATCC 25196] Length = 449 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 113/206 (54%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT GKL+K M KV+L + D +R AAI QL++ A +T A+F Sbjct: 100 PAVILMAGLQGAGKTTSSGKLAKWLMEQKKKKVLLVSCDIYRPAAIQQLELLARQTGAEF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A A+ DV+I+DTAGRL + +MA I ++ +LK Sbjct: 160 FPVQAGQQPKEIAAAALNFARRHFHDVMIVDTAGRLAIDEAMMAEISELEALLK------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F TG+++TK+DG ARGG + ++ P+ F Sbjct: 214 PIETLFVVDAMQGQDAVNTAKAFSEALPLTGVVLTKLDGDARGGAALSVLHVTGKPIKFA 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E + LEPF ++ I G D Sbjct: 274 GVAEKLTGLEPFHPDRMASRILGMGD 299 >gi|163738195|ref|ZP_02145611.1| chorismate mutase [Phaeobacter gallaeciensis BS107] gi|161388811|gb|EDQ13164.1| chorismate mutase [Phaeobacter gallaeciensis BS107] Length = 507 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 83/269 (30%), Positives = 139/269 (51%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA+ V+ + + + V+ Q+V+ V + + +L P Sbjct: 38 LLEADVSLPVARDFVKRVQEQATGQAVTKSVTPGQQVVKIVHDALVDVLRGAEDPGQLKV 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P IL+VG+ G GKTT GKL+K++ D G +V++A+ D +R AA+DQL + + Sbjct: 98 DNPPAPILMVGLQGSGKTTTTGKLAKRLKDKEGKRVLMASLDVYRPAAMDQLAVLGTQIG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G +A A +QA DV ++DTAGRL + +LM + + V+ Sbjct: 158 VDTLPIVPGQKPVDIAKRAKQQAALGGYDVYMLDTAGRLQIDEVLMQEVEDVRDVV---- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 +P L V+D TGQ A+ E F A G +G+++T+MDG RGG + + P+ Sbjct: 214 --SPRETLLVVDGLTGQVAVEVAEEFDAKIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ +E F + I G D Sbjct: 272 RFVGLGEKMDAIETFEPDRIAGRILGMGD 300 >gi|257870294|ref|ZP_05649947.1| signal recognition particle protein [Enterococcus gallinarum EG2] gi|257804458|gb|EEV33280.1| signal recognition particle protein [Enterococcus gallinarum EG2] Length = 472 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 93/309 (30%), Positives = 163/309 (52%), Gaps = 23/309 (7%) Query: 20 GFASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75 F S + +L++ ++ + ++ + V+E + ++ L+ +D+ + V ++ + + + Sbjct: 2 AFESLTERLQQAMSKLRKKGKVSEADVKEMMREIRLALLEADVNLQVVKEFTKNVRERAV 61 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129 +V Q+++ V E + K L S+ + S + P VI++ G+ G GKTT G Sbjct: 62 GAEVLDSLSPAQQIVKIVDEELTKTLG--SETVGIEKSPKIPTVIMMAGLQGAGKTTFAG 119 Query: 130 KLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAF 186 KL+ + + ++ AGD +R AAIDQLK+ + D ++G+D + + + Sbjct: 120 KLANHLIKTENARPLMIAGDVYRPAAIDQLKVLGQQL--DVPVFDMGTDVSPVEIVRQGM 177 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A+ KK D ++IDTAGRLH + LM + K I+ L + P+ +L V+DA TGQ+A+ Sbjct: 178 ALAREKKNDYVLIDTAGRLHIDETLMDEL-KQIKELAQ-----PNEILLVVDAMTGQDAV 231 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ G TG+++TK+DG RGG + I P+ F G GE + DLE F Sbjct: 232 NVADSFNQQLGITGVVITKLDGDTRGGAALSIRQVTGAPIKFTGTGEKLTDLEVFHPDRM 291 Query: 307 SAVITGCLD 315 S+ I G D Sbjct: 292 SSRILGMGD 300 >gi|67902518|ref|XP_681515.1| SR54_ASPNG SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN HOMOLOG [Aspergillus nidulans FGSC A4] gi|40739794|gb|EAA58984.1| SR54_ASPNG SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN HOMOLOG [Aspergillus nidulans FGSC A4] gi|259481033|tpe|CBF74199.1| TPA: hypothetical protein similar to srpA gene product (Broad) [Aspergillus nidulans FGSC A4] Length = 542 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 93/308 (30%), Positives = 146/308 (47%), Gaps = 29/308 (9%) Query: 27 KLKEGITDIISSRRLDD-----GVR------EELEDLLIRSDIGVAVAQKIVEEL----- 70 ++ + D+ S LD+ GV+ +E+ L+ +D+ V + Q + + + Sbjct: 9 RINAAVNDLTRSPNLDEKMLILGVKAFEEMLKEICAALLSADVNVRLVQSLRKSIKASVN 68 Query: 71 ---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L K +Q+ ++D EL+ ++ P ++PF R +VI+ VG+ G GKTT Sbjct: 69 FASLPAAVNKKRVIQKAVFD--ELV-ALVNPHAEPFRPK-KGRSNVIMFVGLQGAGKTTT 124 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 KL++ G K L DTFR+ A DQLK A + + S +D A +A E Sbjct: 125 CTKLARHYQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAAEGVA 184 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 + + ++ +++I+DT+GR L + ++ + P + VLD T GQ A Sbjct: 185 KFKKERFEIIIVDTSGRHKQEEQLFTEMTQIQTAV------TPDQTILVLDGTIGQAAEV 238 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 Q F A A +I+TK DG A GGG I V P+ FLG GE + DLE F K F Sbjct: 239 QSSAFKATADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMMDLERFEPKAFI 298 Query: 308 AVITGCLD 315 + G D Sbjct: 299 QKLLGMGD 306 >gi|332977903|gb|EGK14651.1| signal recognition particle protein Ffh [Psychrobacter sp. 1501(2011)] Length = 516 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 95/309 (30%), Positives = 158/309 (51%), Gaps = 25/309 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + I S +L +D +++ L ++ L+ +D+ + + + V+ + + Sbjct: 2 FDTLTERLSGSLRKISGSGQLNEDNIKDTLREVRMALLEADVALPITRDFVKRVKEQALG 61 Query: 77 KDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTV 127 ++V + +++YD EL M S + + +P VI L+ G+ G GKTT Sbjct: 62 QEVLKELAPGQAFVKIVYD--ELTEMMG---SANQQLEMTGKPPVIYLLAGLQGAGKTTT 116 Query: 128 IGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL+K + + KVML + D +R AAI QL+ A + +A FV S + +A A Sbjct: 117 ASKLAKYLQERHKKKVMLVSADVYRPAAIKQLEQVAGQVNAKFVNSSTDENPIDIAKRAI 176 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 ++A+ + D+LIIDTAGRLH + +M I + + P L V+DA TGQ+A Sbjct: 177 EEAKLQYQDILIIDTAGRLHIDEAMMDEIKALTAAVN------PSETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TG+I+TK DG ARGG + + P+ FLG GE ++ LE F + Sbjct: 231 NTAKAFNDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGRGEKLDALEAFHPERI 290 Query: 307 SAVITGCLD 315 + I G D Sbjct: 291 AQRILGMGD 299 >gi|227515698|ref|ZP_03945747.1| Sec family type I general secretory pathway protein signal recognition particle protein [Lactobacillus fermentum ATCC 14931] gi|227085946|gb|EEI21258.1| Sec family type I general secretory pathway protein signal recognition particle protein [Lactobacillus fermentum ATCC 14931] Length = 476 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/282 (31%), Positives = 148/282 (52%), Gaps = 20/282 (7%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML 96 +RE + ++ L+ +D+ V + V+ + K +V Q+++ V++ + +M+ Sbjct: 28 LRETMREIRLALLEADVNFKVVKDFVKTVREKAAGAEVLKGLNPAQQIVKIVNDELTEMM 87 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAI 155 + P N +H P VI++VG+ G GKTT GKL+K++ + + + A D +R AAI Sbjct: 88 GETATPLNKS-AHIPTVIMMVGLQGAGKTTTAGKLAKRLKKEENARPLFIAADVYRPAAI 146 Query: 156 DQLKIWADRTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 QL+ A S D E+G+D + + + A+ K D +IIDTAGRL + LM Sbjct: 147 TQLQQVA--ASIDVPVFEMGTDVDPVEIVRQGMEVAKEKHNDYVIIDTAGRLQIDEQLME 204 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + K+ + K P +L V+DA TGQNA+ + F TG+++TK+DG RGG Sbjct: 205 ELAKIKELAK------PDEILLVVDAMTGQNAVNTAQGFDDQLDITGVVLTKLDGDTRGG 258 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+G GE +++L+ F ++ I G D Sbjct: 259 AAMSIRAVTGKPIKFVGEGEKMDNLDVFHPDRMASRILGMGD 300 >gi|294622904|ref|ZP_06701817.1| signal recognition particle protein [Enterococcus faecium U0317] gi|291597676|gb|EFF28829.1| signal recognition particle protein [Enterococcus faecium U0317] Length = 472 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 119/208 (57%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++ G+ G GKTT GKL+ + + + +L AGD +R AAIDQLK+ + D Sbjct: 101 PTVIMMAGLQGAGKTTFTGKLANYLKKNENARPLLIAGDVYRPAAIDQLKVLGQQL--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 ++G++ + + + + A+ KK D ++IDTAGRLH + LM + K I+ L + Sbjct: 159 PVFDMGTEVSPVEIVRQGMELAKEKKNDYVLIDTAGRLHIDETLMDEL-KQIKELTQ--- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA TGQ+A+ + F+ G TG+++TK+DG RGG + I P+ Sbjct: 215 --PNEILLVVDAMTGQDAVNVADSFNQQLGITGVVITKLDGDTRGGAALSIRSVTGAPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G GE + DLE F ++ I G D Sbjct: 273 FIGSGEKLTDLEVFHPDRMASRILGMGD 300 >gi|119946973|ref|YP_944653.1| signal recognition particle protein [Psychromonas ingrahamii 37] gi|119865577|gb|ABM05054.1| signal recognition particle subunit FFH/SRP54 (srp54) [Psychromonas ingrahamii 37] Length = 457 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 89/305 (29%), Positives = 157/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + ++ RL +D +++ L ++ L+ +D+ + V + +E + T+ Sbjct: 2 FENLTERLSKTLKNVSGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFIEAIKTRSVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV+ Q + V + + +++ + + P ++L+ G+ G GKTT + KL Sbjct: 62 QDVAKSLSPGQAFIKIVQNELELAMGEVNESLDL-ATQPPAILLMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 + + K V++ + D +R AAI QL+ A +F S+I +A A A+ Sbjct: 121 GRLLKTRDKKSVLVVSADIYRPAAIKQLETLAAEVGVEFFPSDITQKPIDIANAAIAYAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K +DV+I+DTAGRLH + +M I + R +K P L V+DA TGQ+A + Sbjct: 181 KKFIDVVIVDTAGRLHVDGEMMDEIKDLHRAIK------PIETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK DG ARGG + I P+ F+G+GE ++ LE F ++ I Sbjct: 235 SFNETLPLTGIILTKADGDARGGAALSIRHITGKPIKFIGMGEKVDALEAFHPDRIASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|257867539|ref|ZP_05647192.1| signal recognition particle protein [Enterococcus casseliflavus EC30] gi|257873868|ref|ZP_05653521.1| signal recognition particle protein [Enterococcus casseliflavus EC10] gi|257877619|ref|ZP_05657272.1| signal recognition particle protein [Enterococcus casseliflavus EC20] gi|325571330|ref|ZP_08146830.1| Sec family type I general secretory pathway protein signal recognition particle protein [Enterococcus casseliflavus ATCC 12755] gi|257801595|gb|EEV30525.1| signal recognition particle protein [Enterococcus casseliflavus EC30] gi|257808032|gb|EEV36854.1| signal recognition particle protein [Enterococcus casseliflavus EC10] gi|257811785|gb|EEV40605.1| signal recognition particle protein [Enterococcus casseliflavus EC20] gi|325155806|gb|EGC68002.1| Sec family type I general secretory pathway protein signal recognition particle protein [Enterococcus casseliflavus ATCC 12755] Length = 472 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/208 (37%), Positives = 115/208 (55%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++ G+ G GKTT GKL+ + + ++ AGD +R AAIDQLK+ + D Sbjct: 101 PTIIMMAGLQGAGKTTFAGKLANHLIKTENARPLMIAGDVYRPAAIDQLKVLGQQL--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 ++G+D + + + A+ KK D ++IDTAGRLH + LM + K I+ D Sbjct: 159 PVFDMGTDVSPVEIVRQGLALAREKKNDYVLIDTAGRLHIDENLMEEL-KQIK-----DL 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA TGQ+A+ E F+ G TG+++TK+DG RGG + I P+ Sbjct: 213 AQPNEILLVVDAMTGQDAVNVAESFNQQLGITGVVITKLDGDTRGGAALSIRQVTGAPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE + DLE F S+ I G D Sbjct: 273 FTGTGEKLTDLEVFHPDRMSSRILGMGD 300 >gi|116072341|ref|ZP_01469608.1| Signal recognition particle protein [Synechococcus sp. BL107] gi|116064863|gb|EAU70622.1| Signal recognition particle protein [Synechococcus sp. BL107] Length = 486 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 89/280 (31%), Positives = 143/280 (51%), Gaps = 16/280 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPLS 100 DG +E+ L+ +D+ + V + V E+ K +V V+ V D +++H L+ + Sbjct: 28 DGALKEVRRALLEADVSLPVVKDFVSEVRGKAVGAEV-VRGVSPDQKFIQVVHDQLVDVM 86 Query: 101 KPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 N S P V+L+ G+ G GKTT KL + D G + ++ D +R AAI+Q Sbjct: 87 GGDNAPLARASETPTVVLMAGLQGAGKTTATAKLGLHLKDQGRRSLMVGADVYRPAAIEQ 146 Query: 158 LKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 LK + D +G+DA +A +A+A+ D L++DTAGRL ++ +M Sbjct: 147 LKTLGGQIGVDVFS--LGTDAKPEEIAAAGLAKAKAEGYDTLLVDTAGRLQIDTEMM--- 201 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 G+M+R+ + P VL V+D+ GQ A FH G TG ++TK+DG +RGG Sbjct: 202 GEMVRIRSAVQ---PDEVLLVVDSMIGQEAAELTRAFHEQVGITGAVLTKLDGDSRGGAA 258 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+G GE + L+PF + ++ I G D Sbjct: 259 LSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRILGMGD 298 >gi|227551902|ref|ZP_03981951.1| Sec family type I general secretory pathway protein signal recognition particle protein [Enterococcus faecium TX1330] gi|257884147|ref|ZP_05663800.1| signal recognition particle protein [Enterococcus faecium 1,231,501] gi|257886935|ref|ZP_05666588.1| signal recognition particle protein [Enterococcus faecium 1,141,733] gi|257895507|ref|ZP_05675160.1| signal recognition particle protein [Enterococcus faecium Com12] gi|257898122|ref|ZP_05677775.1| signal recognition particle protein [Enterococcus faecium Com15] gi|293378372|ref|ZP_06624541.1| signal recognition particle protein [Enterococcus faecium PC4.1] gi|293571524|ref|ZP_06682547.1| signal recognition particle protein [Enterococcus faecium E980] gi|227178974|gb|EEI59946.1| Sec family type I general secretory pathway protein signal recognition particle protein [Enterococcus faecium TX1330] gi|257819985|gb|EEV47133.1| signal recognition particle protein [Enterococcus faecium 1,231,501] gi|257822989|gb|EEV49921.1| signal recognition particle protein [Enterococcus faecium 1,141,733] gi|257832072|gb|EEV58493.1| signal recognition particle protein [Enterococcus faecium Com12] gi|257836034|gb|EEV61108.1| signal recognition particle protein [Enterococcus faecium Com15] gi|291608390|gb|EFF37689.1| signal recognition particle protein [Enterococcus faecium E980] gi|292643236|gb|EFF61377.1| signal recognition particle protein [Enterococcus faecium PC4.1] Length = 472 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 119/208 (57%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++ G+ G GKTT GKL+ + + + +L AGD +R AAIDQLK+ + D Sbjct: 101 PTVIMMAGLQGAGKTTFTGKLANYLKKNENARPLLIAGDVYRPAAIDQLKVLGQQL--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 ++G++ + + + + A+ KK D ++IDTAGRLH + LM + K I+ L + Sbjct: 159 PVFDMGTEVSPVEIVRQGMELAREKKNDYVLIDTAGRLHIDETLMDEL-KQIKELTQ--- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA TGQ+A+ + F+ G TG+++TK+DG RGG + I P+ Sbjct: 215 --PNEILLVVDAMTGQDAVNVADSFNQQLGITGVVITKLDGDTRGGAALSIRSVTGAPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G GE + DLE F ++ I G D Sbjct: 273 FIGSGEKLTDLEVFHPDRMASRILGMGD 300 >gi|77457245|ref|YP_346750.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pseudomonas fluorescens Pf0-1] gi|77381248|gb|ABA72761.1| signal recognition particle protein [Pseudomonas fluorescens Pf0-1] Length = 458 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 95/309 (30%), Positives = 155/309 (50%), Gaps = 25/309 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KERA 59 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N D + P VIL+ G+ G GKTT GK Sbjct: 60 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLNLSAVPPAVILMAGLQGAGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL+ A+ F S++ +A A K+A Sbjct: 120 LARFLKERKKKSVMVVSADIYRPAAIKQLETLANDIGVTFFPSDLSQKPVDIANAAIKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246 + K +DV+I+DTAGRLH + +M I + HA P L V+DA TGQ+A Sbjct: 180 KLKFIDVVIVDTAGRLHIDEEMMGEIKAL---------HAAINPVETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F TG+I+TK+DG ARGG + + P+ F+G+GE L+PF + Sbjct: 231 NTAKAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALDPFHPERI 290 Query: 307 SAVITGCLD 315 ++ I G D Sbjct: 291 ASRILGMGD 299 >gi|262273655|ref|ZP_06051468.1| signal recognition particle subunit Ffh SRP54 [Grimontia hollisae CIP 101886] gi|262222070|gb|EEY73382.1| signal recognition particle subunit Ffh SRP54 [Grimontia hollisae CIP 101886] Length = 454 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 152/306 (49%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D ++E L ++ L+ +D+ + V + V+++ K A Sbjct: 2 FENLTDRLSRTLKNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFVKKV--KESA 59 Query: 77 KDVSVQRVLYDVSELI---HKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGK 130 + V + L E I L + N + + P V+L+ G+ G GKTT +GK Sbjct: 60 VGLEVSKSLTPGQEFIKIVQSELEAVMGASNAELNLATQPPAVVLMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + KV++ + D +R AAI QL+ A DF S +A A Sbjct: 120 LGKMLKERHKKKVLVVSADVYRPAAIKQLETLAGDVGIDFFPSTPDQKPVEIAKAALDHG 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DV+I+DTAGRLH + +M I + +K P L V+DA TGQ+A Sbjct: 180 KLKFYDVVIVDTAGRLHIDEEMMDEIKDIHAAIK------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+++TK+DG ARGG + + P+ FLGVGE + LEPF ++ Sbjct: 234 KAFNDALPLTGVVLTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|220909384|ref|YP_002484695.1| signal recognition particle protein [Cyanothece sp. PCC 7425] gi|219865995|gb|ACL46334.1| signal recognition particle protein [Cyanothece sp. PCC 7425] Length = 489 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/295 (29%), Positives = 143/295 (48%), Gaps = 29/295 (9%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85 D IS + + +RE + L+ +D+ + V + +EE+ K +V +++ Sbjct: 20 DKISETNIQEALRE-VRRALLEADVNLQVVKDFIEEVRVKALGAEVIAGIRPDQQFIKIV 78 Query: 86 YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 YD EL+ M PL+ + P ++L+ G+ G GKTT KL+ + Sbjct: 79 YD--ELVQVMGETNAPLA-----EAETAPTIVLMAGLQGTGKTTAAAKLALHLRKQNRSA 131 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIID 200 +L A D +R AAIDQL + D ++G++ +A + + ++ VD +I+D Sbjct: 132 LLVATDIYRPAAIDQLVTLGKQI--DVPVFQLGTEVNPVEIARQGVEHGRSLNVDTVIVD 189 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL + +MA + ++ + AP L V+DA TGQ A FH G TG Sbjct: 190 TAGRLQIDPEMMAELAQIKTTI------APQETLLVVDAMTGQEAANLTRTFHEQIGITG 243 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I+TKMDG RGG + + P+ F+GVGE + L+PF ++ + G D Sbjct: 244 AILTKMDGDTRGGAALSVRQISGQPIKFIGVGEKVEALQPFYPDRLASRVLGMGD 298 >gi|69248474|ref|ZP_00604748.1| Signal recognition particle protein [Enterococcus faecium DO] gi|257878620|ref|ZP_05658273.1| signal recognition particle protein [Enterococcus faecium 1,230,933] gi|257883120|ref|ZP_05662773.1| signal recognition particle protein [Enterococcus faecium 1,231,502] gi|257891867|ref|ZP_05671520.1| signal recognition particle protein [Enterococcus faecium 1,231,410] gi|257894437|ref|ZP_05674090.1| signal recognition particle protein [Enterococcus faecium 1,231,408] gi|258616855|ref|ZP_05714625.1| signal recognition particle protein [Enterococcus faecium DO] gi|260559333|ref|ZP_05831515.1| signal recognition particle protein [Enterococcus faecium C68] gi|261208009|ref|ZP_05922687.1| signal recognition particle protein [Enterococcus faecium TC 6] gi|289566895|ref|ZP_06447302.1| signal recognition particle protein [Enterococcus faecium D344SRF] gi|293556478|ref|ZP_06675052.1| signal recognition particle protein [Enterococcus faecium E1039] gi|293563841|ref|ZP_06678274.1| signal recognition particle protein [Enterococcus faecium E1162] gi|293567270|ref|ZP_06678624.1| signal recognition particle protein [Enterococcus faecium E1071] gi|294615586|ref|ZP_06695442.1| signal recognition particle protein [Enterococcus faecium E1636] gi|294619810|ref|ZP_06699200.1| signal recognition particle protein [Enterococcus faecium E1679] gi|314938080|ref|ZP_07845388.1| signal recognition particle protein [Enterococcus faecium TX0133a04] gi|314943602|ref|ZP_07850359.1| signal recognition particle protein [Enterococcus faecium TX0133C] gi|314949239|ref|ZP_07852588.1| signal recognition particle protein [Enterococcus faecium TX0082] gi|314952611|ref|ZP_07855603.1| signal recognition particle protein [Enterococcus faecium TX0133A] gi|314992459|ref|ZP_07857881.1| signal recognition particle protein [Enterococcus faecium TX0133B] gi|314997379|ref|ZP_07862334.1| signal recognition particle protein [Enterococcus faecium TX0133a01] gi|68194411|gb|EAN08916.1| Signal recognition particle protein [Enterococcus faecium DO] gi|257812848|gb|EEV41606.1| signal recognition particle protein [Enterococcus faecium 1,230,933] gi|257818778|gb|EEV46106.1| signal recognition particle protein [Enterococcus faecium 1,231,502] gi|257828227|gb|EEV54853.1| signal recognition particle protein [Enterococcus faecium 1,231,410] gi|257830816|gb|EEV57423.1| signal recognition particle protein [Enterococcus faecium 1,231,408] gi|260074693|gb|EEW63013.1| signal recognition particle protein [Enterococcus faecium C68] gi|260077767|gb|EEW65480.1| signal recognition particle protein [Enterococcus faecium TC 6] gi|289161301|gb|EFD09194.1| signal recognition particle protein [Enterococcus faecium D344SRF] gi|291590019|gb|EFF21813.1| signal recognition particle protein [Enterococcus faecium E1071] gi|291591529|gb|EFF23182.1| signal recognition particle protein [Enterococcus faecium E1636] gi|291593943|gb|EFF25427.1| signal recognition particle protein [Enterococcus faecium E1679] gi|291601357|gb|EFF31635.1| signal recognition particle protein [Enterococcus faecium E1039] gi|291604211|gb|EFF33712.1| signal recognition particle protein [Enterococcus faecium E1162] gi|313588547|gb|EFR67392.1| signal recognition particle protein [Enterococcus faecium TX0133a01] gi|313593001|gb|EFR71846.1| signal recognition particle protein [Enterococcus faecium TX0133B] gi|313595279|gb|EFR74124.1| signal recognition particle protein [Enterococcus faecium TX0133A] gi|313597720|gb|EFR76565.1| signal recognition particle protein [Enterococcus faecium TX0133C] gi|313642569|gb|EFS07149.1| signal recognition particle protein [Enterococcus faecium TX0133a04] gi|313644380|gb|EFS08960.1| signal recognition particle protein [Enterococcus faecium TX0082] Length = 472 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 119/208 (57%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++ G+ G GKTT GKL+ + + + +L AGD +R AAIDQLK+ + D Sbjct: 101 PTVIMMAGLQGAGKTTFTGKLANYLKKNENARPLLIAGDVYRPAAIDQLKVLGQQL--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 ++G++ + + + + A+ KK D ++IDTAGRLH + LM + K I+ L + Sbjct: 159 PVFDMGTEVSPVEIVRQGMELAKEKKNDYVLIDTAGRLHIDETLMDEL-KQIKELTQ--- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA TGQ+A+ + F+ G TG+++TK+DG RGG + I P+ Sbjct: 215 --PNEILLVVDAMTGQDAVNVADSFNQQLGITGVVITKLDGDTRGGAALSIRSVTGAPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G GE + DLE F ++ I G D Sbjct: 273 FIGSGEKLTDLEVFHPDRMASRILGMGD 300 >gi|331016301|gb|EGH96357.1| signal recognition particle protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 458 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 152/306 (49%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KERA 59 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N D P VIL+ G+ G GKTT GK Sbjct: 60 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGGGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL+ A+ F S+I +A A K+A Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K +DV+I+DTAGRLH + +M I + K P L V+DA TGQ+A Sbjct: 180 RLKFIDVVIVDTAGRLHVDVEMMGEIQALHAATK------PAETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK+DG ARGG + + P+ F+G+GE LEPF ++ Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|254573270|ref|XP_002493744.1| Signal recognition particle (SRP) subunit (homolog of mammalian SRP54) [Pichia pastoris GS115] gi|238033543|emb|CAY71565.1| Signal recognition particle (SRP) subunit (homolog of mammalian SRP54) [Pichia pastoris GS115] gi|328354432|emb|CCA40829.1| Signal recognition particle subunit SRP54 [Pichia pastoris CBS 7435] Length = 518 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/280 (29%), Positives = 143/280 (51%), Gaps = 24/280 (8%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-------VQRVLYD-VSELIHKMLMP 98 +E+ + L+ SD+ + + ++ E++ + A+D +Q+V++D + +L+ Sbjct: 33 KEICNALLESDVNIKLVAQLREKIRKQIDAEDKPGINKKKLIQKVVFDELVKLVDCNEAE 92 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 L KP + +VI++VG+ G GKTT KL+ G KV + GDTFR+ A DQL Sbjct: 93 LFKPK----KKQTNVIMMVGLQGAGKTTTCTKLAVYYQRRGFKVGMVCGDTFRAGAFDQL 148 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL---MAGI 215 K A + + S +D + ++ ++ + +K +++I+DT+GR L M I Sbjct: 149 KQNATKAKIPYYGSYTETDPVKVTFDGVEEFRKEKFEIIIVDTSGRHRQEEDLFEEMVQI 208 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 GK I+ P+ + VLDA+ GQ+A Q + F + +I+TKMD ++GGG Sbjct: 209 GKAIK---------PNQTIMVLDASIGQSAESQSKAFKESSDFGAIIITKMDSNSKGGGA 259 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + PV F+ GE I + E F + F + + G D Sbjct: 260 LSAIAATNTPVAFIATGEHIQNFEKFSGRGFISKLLGIGD 299 >gi|53804558|ref|YP_113800.1| signal recognition particle protein [Methylococcus capsulatus str. Bath] gi|53758319|gb|AAU92610.1| signal recognition particle protein [Methylococcus capsulatus str. Bath] Length = 452 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 148/286 (51%), Gaps = 14/286 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSE 90 ++ + D +RE + L+ +D+ + V + +E++ + ++V Q ++ V+E Sbjct: 22 LTEANVQDALRE-VRQALLEADVALPVVKDFIEQVKERALGQEVQKSLTPGQAMIKIVNE 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149 + ++ ++ N + P VIL+ G+ G GKTT + KL++ + + K V++A+ D Sbjct: 81 ELVTIMGKANEKLNL-ATQPPAVILMAGLQGAGKTTTVAKLARWIKENLRKSVLVASADV 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI QL+ A A+F S+ +A A + + + +DV+IIDTAGRLH + Sbjct: 140 YRPAAIQQLETLASEVKAEFFPSDASERPVDIARRAVEHGRKRYMDVVIIDTAGRLHIDE 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 +M I + +K P L V+D+ TGQ+A + FH TG+I+TK DG Sbjct: 200 DMMDEIKAVHAAIK------PIETLFVVDSMTGQDAANTAKAFHDALPLTGVILTKTDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ARGG + I P+ F+GVGE LE F ++ I G D Sbjct: 254 ARGGAALSIRHITGKPIKFMGVGEKTAALEVFHPDRVASRILGMGD 299 >gi|299144003|ref|ZP_07037083.1| signal recognition particle protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518488|gb|EFI42227.1| signal recognition particle protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 445 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 159/307 (51%), Gaps = 23/307 (7%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F S S KL++ ++ + +S + +D +RE ++ L+ +D+ V + ++ + + Sbjct: 3 FESLSDKLQDTLSRLRGKGKLSEKDIDAAMRE-VKLALLEADVNFKVVKDFIKSVKERSL 61 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +V Q+V+ V+E + ++ D+S +P VI++ G+ G GKTT K Sbjct: 62 GSEVLESLTPGQQVIKIVNEELTSLMG--KGEAKIDYSKKPTVIMMCGLQGAGKTTTSAK 119 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--DAAALAYEAFKQ 188 L+ M G + +L A D +R AAI QL+I +S D +G + +A A + Sbjct: 120 LANLMKKNGKRPLLVACDVYRPAAIKQLQIVG--SSVDVPVFSMGDKINPVDIAKAALEH 177 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ DV+++DTAGRLH + LM +L+ + P VL VLD+ TGQ+A+ Sbjct: 178 AKKNGNDVVLLDTAGRLHIDESLME------ELLRMNEQTNPSEVLLVLDSMTGQDAVNV 231 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F + +G+I+TK+DG ARGG + I +P+ F+ +GE ++ +E F ++ Sbjct: 232 ADSFDKLLKLSGVILTKLDGDARGGAALSIRAVTDVPIKFIAMGEKLDQIEVFHPDRMAS 291 Query: 309 VITGCLD 315 I G D Sbjct: 292 RILGMGD 298 >gi|124026411|ref|YP_001015526.1| signal recognition particle protein (SRP54) [Prochlorococcus marinus str. NATL1A] gi|123961479|gb|ABM76262.1| signal recognition particle protein (SRP54) [Prochlorococcus marinus str. NATL1A] Length = 487 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 146/285 (51%), Gaps = 13/285 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 IS +D+ +++ + L+ +D+ ++V ++ ++E+ K +V Q+ + V E Sbjct: 22 ISEENVDEALKQ-VRRALLDADVSLSVVKEFIDEVRVKAVGTEVVRGIDPGQKFIQVVHE 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + ++ + P + +P VIL+ G+ G GKTT KL + + K +L A DT+ Sbjct: 81 ELVNVMGGENDPL-ANSEEQPTVILMAGLQGAGKTTATAKLGLLLKEKNKKPLLVAADTY 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAIDQL + + +A + ++A+ + D +++DTAGRL ++ Sbjct: 140 RPAAIDQLVTLGKQIDVEVFNLSSNLKPEEIAKKGLEKAKKEGFDTVLVDTAGRLQIDTD 199 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 +M G+M+R+ + + P VL V+D+ GQ A FH G TG ++TK+DG + Sbjct: 200 MM---GEMVRIKEAVQPD---EVLLVVDSMIGQEAADITRSFHEKVGITGAVLTKLDGDS 253 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I P+ F+G GE + L+PF + ++ I G D Sbjct: 254 RGGAALSIRKISGKPIKFIGTGEKVEALQPFYPERMASRILGMGD 298 >gi|238921089|ref|YP_002934604.1| signal recognition particle protein [Edwardsiella ictaluri 93-146] gi|238870658|gb|ACR70369.1| signal recognition particle protein, putative [Edwardsiella ictaluri 93-146] Length = 453 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 95/306 (31%), Positives = 154/306 (50%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + +I RL +D +++ L ++ L+ +D+ + V ++ + + K A Sbjct: 2 FENLSDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVREFISRV--KESA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPF---NWDFS---HRPHVILVVGVNGVGKTTVIGK 130 V + L E + + L++ N + + P V+L+ G+ G GKTT +GK Sbjct: 60 LGQEVNKSLTPGQEFVKIVQDELTRAMGEANTELNLAAQPPAVVLMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + K V++ + D +R AAI QL+ A+ DF S++ + A A Sbjct: 120 LGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAEGVGIDFFPSDVQERPLDIVQRALTHA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVLI+DTAGRLH + +M I ++ + +P L V+DA TGQ+A Sbjct: 180 KQKFYDVLIVDTAGRLHVDEAMMDEIKQIHAAI------SPVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF ++ Sbjct: 234 SAFNQALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFYPDRVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|148978164|ref|ZP_01814694.1| signal recognition particle GTPase [Vibrionales bacterium SWAT-3] gi|145962586|gb|EDK27862.1| signal recognition particle GTPase [Vibrionales bacterium SWAT-3] Length = 405 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 98/307 (31%), Positives = 154/307 (50%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D +++ L ++ L+ +D+ + V + V+ + K A Sbjct: 2 FDNLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVKRV--KEGA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E I + L ++ N + P VIL+ G+ G GKTT +G Sbjct: 60 VGVEVSKSLTPGQEFIKIVQAELEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KLSK +++ K V++ + D +R AAI QL+ A DF S +A A Sbjct: 119 KLSKLLTERDKKKVLVVSADVYRPAAIKQLETLASDVGVDFFPSSADQKPIDIANAAIDH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DVL++DTAGRL + +M I ++ + P L V+DA TGQ+A Sbjct: 179 AKKKFYDVLLVDTAGRLAIDEEMMGEIQELHTAIN------PVETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+I+TK+DG ARGG + + P+ FLGVGE + LEPF ++ Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|11498230|ref|NP_069456.1| signal recognition particle protein Srp54 [Archaeoglobus fulgidus DSM 4304] gi|3334342|sp|O29633|SRP54_ARCFU RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|2650007|gb|AAB90619.1| signal recognition particle, subunit SRP54 (srp54) [Archaeoglobus fulgidus DSM 4304] Length = 433 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 96/300 (32%), Positives = 149/300 (49%), Gaps = 28/300 (9%) Query: 28 LKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRYAKDV---- 79 LKE I S +D EE+ + LI++D+ V ++I + + + ++DV Sbjct: 6 LKEVARKIAGSSSIDKKFVEEMVKEIQRALIKADVNVRQVKEISDAIKKRALSEDVLPAL 65 Query: 80 ----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 + +++Y+ EL+ + L P + I++VG+ G GKTT K++K Sbjct: 66 NAKEQILKIVYE--ELLRGVGEGLEIPL------KKAKIMLVGLQGSGKTTTTAKMAKYF 117 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 D G+KV + A DT+R AA +QL+ A+ F + DA + A ++ K D Sbjct: 118 KDRGMKVAVVAADTWRPAAYEQLRQLAEEYGITFYGEKGEKDAVKIVKNALEKL--KDHD 175 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 ++IIDTAGR L I +MI++ + P L VLDA GQ A +Q + FH Sbjct: 176 MIIIDTAGRHALEDEL---IDEMIKIA---EVARPDYKLLVLDAAIGQLASKQAQAFHEA 229 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G G+I+TK DGTA+GGG + IP+ F+G GE + D E F F + + G D Sbjct: 230 IGINGIIITKFDGTAKGGGALSAARQIGIPIAFIGTGEKVEDFERFDPAGFVSRLLGMGD 289 >gi|27573157|gb|AAO19978.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|36939131|gb|AAQ86944.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|36939151|gb|AAQ86948.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|37623910|gb|AAQ95587.1| regulatory protein [Neisseria gonorrhoeae] Length = 311 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 67/196 (34%), Positives = 116/196 (59%), Gaps = 2/196 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G A + K+ + + + ++ + + EELE +LI D+G+ + +++++ Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 176 RGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W R + V S+ D+AA+ ++A + A Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVT-VISQTAGDSAAVCFDAVQAA 294 Query: 190 QAKKVDVLIIDTAGRL 205 +A+ +D+++ DTAGRL Sbjct: 295 KARGIDIVLADTAGRL 310 >gi|317011348|gb|ADU85095.1| signal recognition particle protein [Helicobacter pylori SouthAfrica7] Length = 448 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/297 (29%), Positives = 153/297 (51%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ VA+++++++ T+ A + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVETQTKANGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L L +L LS F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---DALEKSLLEILSAQGGSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVLI Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVQEIANNALKRAKEAQFDVLI 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + ++ +L PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMKELKEVKAILN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I +P+ F+G GE I DL+ FV + + G D Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291 >gi|36939139|gb|AAQ86946.1| regulatory protein PilA [Neisseria gonorrhoeae] Length = 311 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 67/196 (34%), Positives = 116/196 (59%), Gaps = 2/196 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G A + K+ + + + ++ + + EELE +LI D+G+ + +++++ Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMETTEYLMKDV 175 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 176 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W R + V S+ D+AA+ ++A + A Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVT-VISQTAGDSAAVCFDAVQAA 294 Query: 190 QAKKVDVLIIDTAGRL 205 +A+ +D+++ DTAGRL Sbjct: 295 KARGIDIVLADTAGRL 310 >gi|254796898|ref|YP_003081735.1| signal recognition particle protein [Neorickettsia risticii str. Illinois] gi|254590134|gb|ACT69496.1| signal recognition particle protein [Neorickettsia risticii str. Illinois] Length = 449 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 93/292 (31%), Positives = 152/292 (52%), Gaps = 22/292 (7%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDV-S 89 +I+ + DD VR+ L + +D+ + V ++ + E ++ K K +S V+ V Sbjct: 21 VITEKEFDDFVRK-LRLTFLEADVSLPVTKQFIANVKESVIGKSRVKGISTPAVIGSVVK 79 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS----KKMSDAGLKVMLA 145 E + K+L S+ F + + + VG+ GVGKTT KL+ KK ++L+ Sbjct: 80 EELVKILGGESQKFEFP-KFGKQIFMFVGLQGVGKTTTAAKLALLIRKKFKK---NILLS 135 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK--QAQAKKVDVLIIDTAG 203 + D +R AA QL+I A + D V G D A+ + + DVLI+DTAG Sbjct: 136 SVDIYRPAARKQLEILAKQIDVDSVPIVEGEDVDAIVKKTLDLFNNSNENYDVLIVDTAG 195 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 R +S+LM + +RV+K + P + QVLDA GQ++L + FH+ GTTG+I+ Sbjct: 196 RSQIDSVLM----EELRVIK--NCLQPSEIFQVLDAMMGQDSLNVAKTFHSEIGTTGVIV 249 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +++D AR G ++ + + +P+ F G GE +NDLE F + + I G D Sbjct: 250 SRLDSDARVGSVLSVRQSVGLPIRFCGAGERVNDLEEFHPERMAGRIMGAGD 301 >gi|255949096|ref|XP_002565315.1| Pc22g13910 [Penicillium chrysogenum Wisconsin 54-1255] gi|211592332|emb|CAP98679.1| Pc22g13910 [Penicillium chrysogenum Wisconsin 54-1255] Length = 522 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 91/301 (30%), Positives = 143/301 (47%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ + D+ S LD D + +E+ L+ +D+ V + + + + L Sbjct: 9 RINSAVNDLTRSNNLDEKAFDDMLKEICAALLSADVNVRLVGTLRKSIKASVNFASLPAA 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D EL+ K++ P + F R +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKTVFD--ELV-KLVDPHADSFRPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G K L DTFR+ A DQLK A + + S +D A +A E + + ++ Sbjct: 125 YQTRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAAEGVAKFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D++I+DT+GR L + ++ + P + VLD+T GQ A Q F A Sbjct: 185 DIIIVDTSGRHRQEEELFTEMTQIQTAV------TPDQTILVLDSTIGQAAEAQSAAFKA 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V P+ FLG GE + DLE F + F + G Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMMDLERFEPRAFVQKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|254169167|ref|ZP_04876003.1| SRP54-type protein, GTPase domain [Aciduliprofundum boonei T469] gi|197621902|gb|EDY34481.1| SRP54-type protein, GTPase domain [Aciduliprofundum boonei T469] Length = 366 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 102/313 (32%), Positives = 158/313 (50%), Gaps = 33/313 (10%) Query: 9 ESL-SWIRKLTK-GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 ESL + IRK++K G+ SL +KE + DI + L+R+D+ V +A K+ Sbjct: 7 ESLRNTIRKISKAGYVDESL-IKEVVRDIQRA--------------LLRADVEVHLALKL 51 Query: 67 VEEL----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + + L ++ +S + L + + +++ L K + + +P +++VG+ G Sbjct: 52 SKNVERRALEEKPPSGMSHRDFLIKI--IYEELVAILGK--EKEVALKPQKLMLVGLYGQ 107 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT GKL++ GL V L A D R AA +QLK ++ + DA +A Sbjct: 108 GKTTTAGKLARYFHKKGLSVALIACDVHRPAAYEQLKQIGEQLNVPVFGIPGEKDARKIA 167 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 EA K+ K V I DT+GR L+ I + +++ P + VLDAT G Sbjct: 168 REAVKKM--KDYQVQIFDTSGRHALEDDLIEEIKDLKEIIQ------PDEIFLVLDATIG 219 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 Q A +Q + FH G TG+I+TKMDG+A+GGG + V PV F+G GE + DLE F Sbjct: 220 QQAGKQAKAFHDAVGVTGVIITKMDGSAKGGGALSAVAATGAPVVFIGTGEHLEDLEHFN 279 Query: 303 AKDFSAVITGCLD 315 F + + G D Sbjct: 280 PTRFISRLLGMGD 292 >gi|330964074|gb|EGH64334.1| signal recognition particle protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 458 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 151/306 (49%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KERA 59 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N D P VIL+ G+ G GKTT GK Sbjct: 60 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL+ A F S+I +A A K+A Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLATDIGVTFFASDISQKPVDIALAAIKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K +DV+I+DTAGRLH + +M I + K P L V+DA TGQ+A Sbjct: 180 RLKFIDVVIVDTAGRLHIDVEMMGEIQALHAATK------PAETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK+DG ARGG + + P+ F+G+GE LEPF ++ Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|320329550|gb|EFW85539.1| signal recognition particle protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 458 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 95/306 (31%), Positives = 152/306 (49%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRLD-DGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L+ D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNV--KERA 59 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N D P VIL+ G+ G GKTT GK Sbjct: 60 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL+ A+ F S+I +A A K+A Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K +D++I+DTAGRLH + +M I + K P L V+DA TGQ+A Sbjct: 180 RLKFIDMVIVDTAGRLHVDVEMMGEIQALHAATK------PAETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK+DG ARGG + + P+ F+G+GE LEPF ++ Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|268316589|ref|YP_003290308.1| signal recognition particle protein [Rhodothermus marinus DSM 4252] gi|262334123|gb|ACY47920.1| signal recognition particle protein [Rhodothermus marinus DSM 4252] Length = 450 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 92/312 (29%), Positives = 151/312 (48%), Gaps = 28/312 (8%) Query: 21 FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + KL+ + + R+ + G E+ L+ +D+ VA++ E + K Sbjct: 2 FESLTEKLEAALKSVSGQGRITELNIAGTMREIRRALLEADVNYQVAREFTERVKEKALG 61 Query: 77 KDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTV 127 V + +++YD EL+ + S+ + + S P VILV G+ G GKTT Sbjct: 62 TKVLSSVSPGQQLVKIVYD--ELVRLLG---SEQVDINLSPTPPTVILVAGLQGSGKTTF 116 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE----IGSDAAALAY 183 KL+ G +LAA D +R AA++QLK A + E + DA +A Sbjct: 117 CAKLALYFKKKGRAPLLAAADVYRPAAVEQLKTLAASINVPVYSIEENGQVVQDAVRVAR 176 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 EA ++A+ D++IIDTAGRLH + +M + ++ ++ PH +L V+D+ TGQ Sbjct: 177 EAVQEARRTARDIVIIDTAGRLHIDEAMMQEVEQIKEAVR------PHEILFVVDSMTGQ 230 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 +A+ + F+ G+++TK+DG RGG + I P+ F GE ++ L PF Sbjct: 231 DAVNTAKAFNERLDFDGVVLTKLDGDTRGGAALSIRSVVNKPIKFASTGEKLDALTPFYP 290 Query: 304 KDFSAVITGCLD 315 + I G D Sbjct: 291 DRMAQRILGMGD 302 >gi|150401682|ref|YP_001325448.1| signal recognition particle protein Srp54 [Methanococcus aeolicus Nankai-3] gi|166222333|sp|A6UWG4|SRP54_META3 RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|150014385|gb|ABR56836.1| GTP-binding signal recognition particle SRP54 G- domain [Methanococcus aeolicus Nankai-3] Length = 450 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 147/287 (51%), Gaps = 22/287 (7%) Query: 39 RRLDDGVREELEDLLIRSDIGV--------AVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90 ++L V ++++ LI++D+ V + +K + E K +K + +++YD E Sbjct: 24 KKLVKEVIKDIQKALIQADVNVKLVFAMSKEIERKAIYESAPKGLSKKDHIIKIVYD--E 81 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 L+ K+L + D ++ ++IL+VG+ G GKTT KL++ + G K L A D + Sbjct: 82 LV-KLLGEEGQKLELDPKNK-NIILLVGIQGSGKTTSAAKLARTLQKRGFKPALIAADVY 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAA-ALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 R AA QLK +++ + + E KQ KK DV+IIDTAGR S Sbjct: 140 RPAAYQQLKQLSEKIHIPLHGDPTKTKTPMEITEEGLKQF--KKNDVIIIDTAGRHKEES 197 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTTGLIMTKMDG 268 L+ + +M + P ++ V+D T GQ A Q + F AV +++TKMDG Sbjct: 198 GLLEEMKEM------KEKFNPEEIILVIDGTLGQQAKNQAKAFKDAVENIGSILITKMDG 251 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +A+GGG + V P+ F+G GE ++DLEPF K F + + G D Sbjct: 252 SAKGGGALSAVAEIGAPIKFIGTGEKVDDLEPFDPKKFISRLLGMGD 298 >gi|330872812|gb|EGH06961.1| signal recognition particle protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 458 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 151/306 (49%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KERA 59 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N D P VIL+ G+ G GKTT GK Sbjct: 60 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL+ A F S+I +A A K+A Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLATDIGVTFFASDISQKPVDIALAAIKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K +DV+I+DTAGRLH + +M I + K P L V+DA TGQ+A Sbjct: 180 RLKFIDVVIVDTAGRLHIDVEMMGEIQALHAATK------PAETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK+DG ARGG + + P+ F+G+GE LEPF ++ Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|284007749|emb|CBA73571.1| signal recognition particle protein [Arsenophonus nasoniae] Length = 453 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 152/306 (49%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D ++E L ++ L+ +D+ + V ++ ++ + Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVREFIQSVKESAVG 61 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS------HRPHVILVVGVNGVGKTTVIGK 130 +DV+ + L E + + L+K + S P VIL+ G+ G GKTT + K Sbjct: 62 QDVN--KSLTPGQEFVKIVQNELTKAMGEENSALNLAIQPPAVILMAGLQGAGKTTTVAK 119 Query: 131 LSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + K +L + D +R AAI QL+ DF S +A A + A Sbjct: 120 LGKLLKEKQKKKVLVVSADIYRPAAIKQLETLTQTVGIDFFPSTSSEKPVEIATNALQHA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVLIIDTAGRLH + +M I + R + P L ++DA TGQ+A Sbjct: 180 KLKFYDVLIIDTAGRLHVDEAMMEEIQAIHRAIN------PIETLFIVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+I+TK+DG ARGG + I P+ FLG+GE I LEPF ++ Sbjct: 234 KSFNETLPLTGVILTKIDGDARGGAALSIRHITGKPIKFLGIGEKIEGLEPFYPDRIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|298735845|ref|YP_003728370.1| signal recognition particle, subunit SRP54 [Helicobacter pylori B8] gi|298355034|emb|CBI65906.1| signal recognition particle, subunit SRP54 [Helicobacter pylori B8] Length = 448 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 87/297 (29%), Positives = 154/297 (51%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ VA+++++++ ++ A + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKASGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L L +L LS + F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---DALEKSLLEILSTKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVLI Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLI 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + ++ +L PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMQELKEVKEILN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I +P+ F+G GE I DL+ FV + + G D Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291 >gi|209879780|ref|XP_002141330.1| signal recognition particle protein SRP54 [Cryptosporidium muris RN66] gi|209556936|gb|EEA06981.1| signal recognition particle protein SRP54, putative [Cryptosporidium muris RN66] Length = 497 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/286 (29%), Positives = 144/286 (50%), Gaps = 13/286 (4%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKI---VEELLTKRYAKDVSVQRVLYDVS-- 89 I+ +D+ +RE + L+++D+ V + ++ +++ ++ + V+ +R L S Sbjct: 22 IVDEATIDNCLRE-IATALLQADVNVKLVAQLRNNIKKAISSQGNLQVASKRRLIQASVV 80 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 E + K+L P KP+ + ++++ VG+ G GKTT K + G K L DT Sbjct: 81 EELVKILTPQRKPY-VPTKDKCNIVVFVGLQGSGKTTTCTKYAHYYQRKGWKTALVCADT 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+ A DQLK A + F S +D +A + K+ + D++I+DT+GR S Sbjct: 140 FRAGAFDQLKQNATKAKIPFYGSYTETDPVKIASDGVKEFRDDNYDLIIVDTSGRHKQES 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 L + +++ K P +V+ V+D+ GQ Q F +V +I+TK+DG Sbjct: 200 SLFVEMQQIVLSTK------PDNVVFVMDSHIGQACYDQALAFCSVIDVGSVIITKLDGH 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 A+GGG + V P+ F+G GE +D EPF + F + + G D Sbjct: 254 AKGGGALSAVAATSAPIIFIGTGEHFDDFEPFETRGFVSRLLGLGD 299 >gi|36939135|gb|AAQ86945.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|36939145|gb|AAQ86947.1| regulatory protein PilA [Neisseria gonorrhoeae] Length = 311 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 67/196 (34%), Positives = 116/196 (59%), Gaps = 2/196 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G A + K+ + + + ++ + + EELE +LI D+G+ + +++++ Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 176 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W R + V S+ D+AA+ ++A + A Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVT-VISQTAGDSAAVCFDAVQAA 294 Query: 190 QAKKVDVLIIDTAGRL 205 +A+ +D+++ DTAGRL Sbjct: 295 KARGIDIVLADTAGRL 310 >gi|237737651|ref|ZP_04568132.1| signal recognition particle protein [Fusobacterium mortiferum ATCC 9817] gi|229419531|gb|EEO34578.1| signal recognition particle protein [Fusobacterium mortiferum ATCC 9817] Length = 449 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 109/207 (52%), Gaps = 6/207 (2%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P V+++ G+ G GKTT KL + G KV++ D +R AAI QL++ ++T + Sbjct: 98 RNPTVLMLAGLQGAGKTTFAAKLGNYLKKQGEKVLMVGADVYRPAAIKQLQVLGEQTGIE 157 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 E DA + +A+ +IIDTAGRLH + LM + K I+ L R Sbjct: 158 VYSEENHQDAVGICERGLAKAKELGSTYMIIDTAGRLHIDEKLMDEL-KEIKRLTR---- 212 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P +L V+DA GQ+A+ E F+ V G+++TK+DG RGG + I P+ F Sbjct: 213 -PQEILLVVDAMIGQDAVNLAESFNNVLNIDGVVLTKLDGDTRGGAALSIKAVVGKPIKF 271 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +GVGE I+D+E F + + I G D Sbjct: 272 VGVGEKIDDIELFHPERLVSRILGMGD 298 >gi|78185084|ref|YP_377519.1| Signal recognition particle protein [Synechococcus sp. CC9902] gi|78169378|gb|ABB26475.1| signal recognition particle subunit FFH/SRP54 (srp54) [Synechococcus sp. CC9902] Length = 492 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 89/280 (31%), Positives = 143/280 (51%), Gaps = 16/280 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPLS 100 DG +E+ L+ +D+ + V + V E+ K +V V+ V D +++H L+ + Sbjct: 28 DGALKEVRRALLEADVSLPVVKDFVSEVRGKAVGAEV-VRGVSPDQKFIQVVHDQLVDVM 86 Query: 101 KPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 N S P V+L+ G+ G GKTT KL + D G + ++ D +R AAI+Q Sbjct: 87 GGDNAPLARASEAPTVVLMAGLQGAGKTTATAKLGLHLKDQGRRSLMVGADVYRPAAIEQ 146 Query: 158 LKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 LK + D +G+DA +A +A+A+ D L++DTAGRL ++ +M Sbjct: 147 LKTLGGQIGVDVFS--LGTDAKPEEIAAAGLAKAKAEGYDTLLVDTAGRLQIDTEMM--- 201 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 G+M+R+ + P VL V+D+ GQ A FH G TG ++TK+DG +RGG Sbjct: 202 GEMVRIRSAVQ---PDEVLLVVDSMIGQEAAELTRAFHEQVGITGAVLTKLDGDSRGGAA 258 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+G GE + L+PF + ++ I G D Sbjct: 259 LSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRILGMGD 298 >gi|88855269|ref|ZP_01129934.1| signal recognition particle, subunit SRP54 [marine actinobacterium PHSC20C1] gi|88815797|gb|EAR25654.1| signal recognition particle, subunit SRP54 [marine actinobacterium PHSC20C1] Length = 524 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 89/284 (31%), Positives = 149/284 (52%), Gaps = 18/284 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 DG E+ L+ +D+ + V ++ + + +VS Q+V+ V++ + +L Sbjct: 32 DGTVREIRRALLDADVALEVVKEFTGRVRERALGHEVSQALNPAQQVVQIVNDELVTILG 91 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + P VI++ G+ G GKTT+ GKLSK ++ G +L A D R A+ Q Sbjct: 92 GEARRIEF-AKNPPTVIMLAGLQGAGKTTLAGKLSKWLAADGHTPLLVAADLQRPNAVTQ 150 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L++ A++ E G+ D +A +A K A+ K+ DV+IIDTAGRL ++ LM Sbjct: 151 LQVVAEQAGVAVFAPEPGNGKGDPVKVAKQALKFAKDKQHDVVIIDTAGRLGVDAELMK- 209 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + + K +DP VL V+DA GQ+A++ F TG++++K+DG ARGG Sbjct: 210 --QAANIRKAVDPD---EVLFVIDAMIGQDAVKTARAFQEGVDFTGVVLSKLDGDARGGA 264 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + + P+ F GEG++D EPF ++ I LD G+ Sbjct: 265 ALSVASITGRPIMFASTGEGLDDFEPFHPDRMASRI---LDLGD 305 >gi|325119667|emb|CBZ55220.1| Signal recognition particle GTPase, related [Neospora caninum Liverpool] Length = 583 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/250 (32%), Positives = 127/250 (50%), Gaps = 10/250 (4%) Query: 59 GVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELIHKMLMPLSKPFNWDFSHRPHVILV 116 GV + +E+ T+ A V+ ++++ +SE++ ML P +P+ +VI+ Sbjct: 122 GVGANKDTFQEINTRAAAVGVNSRKIIQKCVISEIV-AMLTPARQPY-VPRKGATNVIMF 179 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VG+ G GKTT K + G +V L DTFR+ A DQLK A + F S + Sbjct: 180 VGLQGSGKTTTCTKFAHYYQRKGWRVALVCADTFRAGAFDQLKQNATKVRIPFYGSYTEA 239 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D +A E +Q + +K D++I+DT+GR + L +M +V + +D P V+ V Sbjct: 240 DPVKIAEEGVEQFRKEKYDMIIVDTSGRHKQEAAL---FDEMKQVAEAVD---PDDVVFV 293 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 +D+ GQ Q + F +I+TK+DG A+GGG + V P+ FLG GE + Sbjct: 294 MDSHIGQACFEQAQAFSESVDVGSVIITKLDGHAKGGGALSAVAATGAPIIFLGSGEHFD 353 Query: 297 DLEPFVAKDF 306 D E F A F Sbjct: 354 DFEAFEANSF 363 >gi|317052717|ref|YP_004113833.1| signal recognition particle protein [Desulfurispirillum indicum S5] gi|316947801|gb|ADU67277.1| signal recognition particle protein [Desulfurispirillum indicum S5] Length = 462 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 6/208 (2%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P V+++ G+ G GKTT GKL+ G KVMLA D +R AA++Q++ A++ Sbjct: 97 STPPTVVMMCGLQGSGKTTTAGKLAASFKKQGRKVMLAGADIYRPAAVEQIRALAEQVGV 156 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 D + +A K A K++D+LI+DTAGRLH + LM + + I+ R Sbjct: 157 DVYAPGTDISPVEICAQARKLAMGKQIDLLILDTAGRLHIDDALMEELVQ-IKASAR--- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V DA TGQ A+ + F +G+I+TKMD ARGG + I P+ Sbjct: 213 --PDEILFVADAMTGQEAVNVAQSFDERLDLSGVILTKMDSDARGGAALSIRALLGKPIK 270 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 ++G GE ++ LEPF ++ I G D Sbjct: 271 YIGGGEKMDALEPFHPDRVASRILGMGD 298 >gi|237801083|ref|ZP_04589544.1| signal recognition particle protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023940|gb|EGI03997.1| signal recognition particle protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 361 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 112/206 (54%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT GKL++ + + K VM+ + D +R AAI QL+ A+ F Sbjct: 3 PAVILMAGLQGAGKTTTAGKLARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTF 62 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S+I +A A K+A+ K +DV+I+DTAGRLH + +M I + K Sbjct: 63 FASDISQKPVEIAQAAIKEAKLKFIDVVIVDTAGRLHVDVEMMGEIQALHAATK------ 116 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA TGQ+A + F TG+I+TK+DG ARGG + + P+ F+ Sbjct: 117 PAETLFVVDAMTGQDAANTAKAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFI 176 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+GE LEPF ++ I G D Sbjct: 177 GMGEKSEALEPFHPDRIASRILGMGD 202 >gi|72382692|ref|YP_292047.1| signal recognition particle protein [Prochlorococcus marinus str. NATL2A] gi|72002542|gb|AAZ58344.1| signal recognition particle subunit FFH/SRP54 (srp54) [Prochlorococcus marinus str. NATL2A] Length = 487 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 146/285 (51%), Gaps = 13/285 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 IS +D+ +++ + L+ +D+ ++V ++ ++E+ K +V Q+ + V E Sbjct: 22 ISEENVDEALKQ-VRRALLDADVSLSVVKEFIDEVRVKAVGTEVVRGIDPGQKFIQVVHE 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + ++ + P + +P VIL+ G+ G GKTT KL + + K +L A DT+ Sbjct: 81 ELVNVMGGENDPL-ANSEEQPTVILMAGLQGAGKTTATAKLGLLLKEKNKKPLLVAADTY 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAIDQL + + +A + ++A+ + D +++DTAGRL ++ Sbjct: 140 RPAAIDQLVTLGKQIDVEVFNLSSNLKPEEIAKKGLEKAKNEGFDTVLVDTAGRLQIDTD 199 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 +M G+M+R+ + + P VL V+D+ GQ A FH G TG ++TK+DG + Sbjct: 200 MM---GEMVRIKEAVQPD---EVLLVVDSMIGQEAADITRSFHEKVGITGAVLTKLDGDS 253 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I P+ F+G GE + L+PF + ++ I G D Sbjct: 254 RGGAALSIRKISGKPIKFIGTGEKVEALQPFYPERMASRILGMGD 298 >gi|85712459|ref|ZP_01043508.1| Signal recognition particle GTPase [Idiomarina baltica OS145] gi|85693737|gb|EAQ31686.1| Signal recognition particle GTPase [Idiomarina baltica OS145] Length = 454 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 155/306 (50%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72 F + S +L + + I RL +D ++ L ++ L+ +D+ + V + K+ E + Sbjct: 2 FENLSERLTQTLRSIGGKGRLTEDNIKSTLREVRMALLEADVALPVVKEFIGKVKERAVG 61 Query: 73 KRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K ++ +V + SEL + + P + + P VIL+ G+ G GKTT +GK Sbjct: 62 TEVNKSLTPGQVFVKIVQSEL-EAAMGEANVPLDLS-TQPPAVILMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L+K + + KVM+ + D +R AAI QL+ A++ F S +A A +A Sbjct: 120 LAKYLKERQKKKVMVVSADIYRPAAIKQLETLAEQVDVSFFPSTTAQSPVEIAQGAIAEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + + VDV+++DTAGRL + +M I + +K P L V+D+ TGQ+A Sbjct: 180 KKQFVDVVLVDTAGRLTIDEDMMQEIQHLHTEIK------PVETLFVVDSMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+I+TK DG ARGG + I P+ FLGVGE + LEPF ++ Sbjct: 234 KAFNEALPLTGVILTKTDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|269140194|ref|YP_003296895.1| signal recognition particle protein [Edwardsiella tarda EIB202] gi|267985855|gb|ACY85684.1| signal recognition particle protein [Edwardsiella tarda EIB202] gi|304560025|gb|ADM42689.1| Signal recognition particle, subunit Ffh SRP54 [Edwardsiella tarda FL6-60] Length = 453 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 97/309 (31%), Positives = 153/309 (49%), Gaps = 25/309 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + +I RL +D +++ L ++ L+ +D+ + V ++ + + K A Sbjct: 2 FENLSDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVREFISRV--KESA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPF---NWDFS---HRPHVILVVGVNGVGKTTVIGK 130 V + L E + + L++ N + + P V+L+ G+ G GKTT +GK Sbjct: 60 LGQEVNKSLTPGQEFVKIVQDELTRAMGEANTELNLAAQPPAVVLMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + K V++ + D +R AAI QL+ A DF S++ + A A Sbjct: 120 LGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQGVGVDFFPSDVQERPLDIVQRALTHA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246 + K DVLI+DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 180 KQKFYDVLIVDTAGRLHVDEAMMDEIKQI---------HAAINPVETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF Sbjct: 231 NTASAFNQALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFYPDRV 290 Query: 307 SAVITGCLD 315 ++ I G D Sbjct: 291 ASRILGMGD 299 >gi|149915436|ref|ZP_01903963.1| signal recognition particle protein [Roseobacter sp. AzwK-3b] gi|149810725|gb|EDM70566.1| signal recognition particle protein [Roseobacter sp. AzwK-3b] Length = 507 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 87/283 (30%), Positives = 147/283 (51%), Gaps = 15/283 (5%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 DD V+ L ++ L+ +D+ + VA+ ++++ + + V+ Q+V+ V + + Sbjct: 24 DDDVKTALREVRVALLEADVSLPVARDFIKKVQDQATGQAVTRSVTPGQQVVKIVHDALV 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRS 152 + L +P + P IL+VG+ G GKTT KL+K++ D G +V++A+ D R Sbjct: 84 ETLTGEGEPGALKIDNPPAPILMVGLQGSGKTTTTAKLAKRLKDRDGKRVLMASLDVNRP 143 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AA++QL+I + D + G D +A A QA DV ++DTAGRLH ++ L+ Sbjct: 144 AAMEQLEILGRQIGVDTLPIVKGEDPVTIAKRAKTQASLGGYDVYLLDTAGRLHIDADLI 203 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 A + D P L V+D TGQ+A+ E F G +G+++T+MDG RG Sbjct: 204 AQAAAV------RDVANPRETLLVVDGLTGQDAVNVAEEFDDKIGVSGVVLTRMDGDGRG 257 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + + P+ F+G+GE ++ LE F + + I G D Sbjct: 258 GAALSMRAVTGKPIKFVGLGEKMDALETFEPERIAGRILGMGD 300 >gi|300772045|ref|ZP_07081915.1| signal recognition particle protein [Sphingobacterium spiritivorum ATCC 33861] gi|300760348|gb|EFK57174.1| signal recognition particle protein [Sphingobacterium spiritivorum ATCC 33861] Length = 445 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/212 (35%), Positives = 113/212 (53%), Gaps = 7/212 (3%) Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWAD 163 D S P VIL+ G+NG GKTT GKL+ + D G K +L AGD +R AAIDQL++ Sbjct: 93 LDTSKNPTVILIAGLNGAGKTTFSGKLANYLKDKKGKKPLLVAGDVYRPAAIDQLEVLGG 152 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + + +D A++ ++A+ +V+IIDTAGRL + LM I + K Sbjct: 153 QVGVPVFVNRESNDPIAISQAGVEEAKRNGHNVVIIDTAGRLAIDEALMVEITAVKEATK 212 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 P +L V+D+ TGQ+A+ + F+ TG+++TK+DG RGG + I Sbjct: 213 ------PQEILFVVDSMTGQDAVNTAKAFNDRLDFTGVVLTKLDGDTRGGAALSIKSVVN 266 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + L+ F ++ I G D Sbjct: 267 KPIKFIGTGEKMEALDVFYPDRMASRILGMGD 298 >gi|86607761|ref|YP_476523.1| signal recognition particle protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556303|gb|ABD01260.1| signal recognition particle protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 487 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/288 (29%), Positives = 146/288 (50%), Gaps = 16/288 (5%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDV 88 D I+ + + +RE + L+ +D+ + V ++ +E++ +V + Q+ + V Sbjct: 20 DKITETNIQEALRE-VRRALLDADVNLQVVKQFIEDVREAALGSEVILGVTPDQQFIKIV 78 Query: 89 SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 + + K++ + P P ++L+ G+ G GKTT KL+ + G K ++ AGD Sbjct: 79 HDELVKVMGEANVPIA-QAEQPPTIVLMAGLQGSGKTTTCAKLALYLRKQGKKSLMVAGD 137 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 +R AAIDQLK + ++G +D +A + + A+ + D +I+DTAGRL Sbjct: 138 IYRPAAIDQLKTLGQQIQ--IPVFDLGKADPVEIARQGVETARQQGYDYVILDTAGRLQI 195 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + +MA + ++ ++ PH +L V+DA GQ A FH G TG I+TK+D Sbjct: 196 DLEMMAELERIKAAVQ------PHEILLVVDAMIGQEAASLTRAFHERLGITGAILTKLD 249 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G RGG + I P+ F+GVGE + L+PF ++ I G D Sbjct: 250 GDTRGGAALSIRQVSGQPIKFIGVGEKVEALDPFYPDRMASRILGMGD 297 >gi|71015804|ref|XP_758844.1| hypothetical protein UM02697.1 [Ustilago maydis 521] gi|46098350|gb|EAK83583.1| hypothetical protein UM02697.1 [Ustilago maydis 521] Length = 638 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/217 (35%), Positives = 110/217 (50%), Gaps = 14/217 (6%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P+VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + + F Sbjct: 127 KPNVIMFVGLQGSGKTTSCTKLALYYQKRGFKTGLVCADTFRAGAFDQLKQNASKINVPF 186 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH- 228 S +D A++ + + +V+I+DT+GR ++ ++ +D Sbjct: 187 YGSYTETDPVAISAAGVASFKQNRFEVIIVDTSGRHKQEQ-------ELFDEMREIDTAV 239 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P + VLDA GQ A Q F AG +I+TK+DG A+GGG I V K P+ F Sbjct: 240 TPDLTIMVLDANIGQAAEAQSRAFKQAAGYGAIIVTKLDGHAKGGGAISAVAATKTPIMF 299 Query: 289 LGVGEGINDLEPFVAKDFSAV------ITGCLDYGEE 319 +G GE DLEPF A+ F + I+G +D EE Sbjct: 300 IGTGEHAADLEPFRAQPFISKLLGMGDISGLMDKMEE 336 >gi|126738051|ref|ZP_01753772.1| signal recognition particle protein [Roseobacter sp. SK209-2-6] gi|126720548|gb|EBA17253.1| signal recognition particle protein [Roseobacter sp. SK209-2-6] Length = 509 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/269 (31%), Positives = 142/269 (52%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVA----QKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA +K+ E+ + K V+ Q+V+ V + + ++L Sbjct: 38 LLEADVSLPVARDFVKKVQEQATGQAVTKSVTPGQQVVKIVHDALVEVLRGDEDLGTLKV 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P IL+VG+ G GKTT GKL+K++ + G +V++A+ D +R AA+DQLK+ + Sbjct: 98 DNPPAPILMVGLQGSGKTTTTGKLAKRLKEKEGKRVLMASLDVYRPAAMDQLKVLGTQIG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G +A A +QA DV ++DTAGRLH + LM + + V+ Sbjct: 158 VDTLPIVPGQKPVDIAKRAKQQATLGGYDVYMLDTAGRLHIDETLMQEVEDVRNVV---- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 +P L V+D TGQ A+ E F A G +G+++T+MDG RGG + + P+ Sbjct: 214 --SPRETLLVVDGLTGQVAVEVAEEFDAKIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ +E F + + I G D Sbjct: 272 RFVGLGEKMDAIETFEPERIAGRILGMGD 300 >gi|86605764|ref|YP_474527.1| signal recognition particle protein [Synechococcus sp. JA-3-3Ab] gi|86554306|gb|ABC99264.1| signal recognition particle protein [Synechococcus sp. JA-3-3Ab] Length = 483 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/288 (29%), Positives = 148/288 (51%), Gaps = 16/288 (5%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDV 88 D I+ + + +RE + L+ +D+ + V ++ +E++ +V + Q+ + V Sbjct: 20 DKITETNIQEALRE-VRRALLDADVNLQVVKQFIEDVRQAALGAEVILGVTPDQQFIKIV 78 Query: 89 SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 + + K++ + P P ++++VG+ G GKTT KL+ + G + +L AGD Sbjct: 79 HDELVKVMGEANVPIA-QAEQPPTIVVMVGLQGSGKTTTCAKLALYLRKQGKRPLLVAGD 137 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 +R AAIDQLK + ++G +D +A + A+ + D +I+DTAGRL Sbjct: 138 IYRPAAIDQLKTLGQQIQ--IPVFDLGKTDPVEIARQGVAAAREQGYDYVILDTAGRLQI 195 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + +MA + ++ ++ PH +L V+DA GQ A + FH G TG I+TK+D Sbjct: 196 DLEMMAELERIKAAVQ------PHEILLVVDAMIGQEAANLTQAFHERLGLTGTILTKLD 249 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G +RGG + I P+ F+GVGE + L+PF ++ I G D Sbjct: 250 GDSRGGAALSIRQVSGQPIKFVGVGEKVEALDPFYPDRMASRILGMGD 297 >gi|225374445|ref|ZP_03751666.1| hypothetical protein ROSEINA2194_00060 [Roseburia inulinivorans DSM 16841] gi|225213683|gb|EEG96037.1| hypothetical protein ROSEINA2194_00060 [Roseburia inulinivorans DSM 16841] Length = 450 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 90/304 (29%), Positives = 155/304 (50%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ ++ S RL +D V+ L+++ L+ +D+ V ++ V+++ + Sbjct: 3 FDSLSEKLQNVFKNLRSKGRLTEDDVKAALKEVKMALLEADVNFKVVKQFVKDVQERAIG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + K++ + VI++ G+ G GKTT KL Sbjct: 63 QDVMNGLNPGQMVIKIVNEEMVKLMGSETTEIKLQPGKALTVIMMEGLQGAGKTTTAAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K G KV+L A D +R AI+QL+I ++ + +A A + A Sbjct: 123 AGKFKLKGKKVLLTACDIYRPGAIEQLQINGEKQGVEVFSMGDKIKPVNIAKAAIEHAAK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + +++I+DTAGRLH + +MA + ++ + H + V+DA TGQ+A+ +M Sbjct: 183 NEFNIVILDTAGRLHIDDDMMAELQEIKENV------TVHQTVLVVDAMTGQDAVNVAKM 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F G G+I+TK+DG RGG + I P+ ++G+GE ++DLE F ++ I Sbjct: 237 FDEKVGIDGVILTKLDGDTRGGAALSIRAVTGKPILYVGMGEKLSDLEQFYPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|295111654|emb|CBL28404.1| signal recognition particle subunit FFH/SRP54 (srp54) [Synergistetes bacterium SGP1] Length = 447 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 93/282 (32%), Positives = 140/282 (49%), Gaps = 21/282 (7%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSELIHK 94 D E+ L+ +D+ VA+ +V + + DV + V+Y+ EL+ Sbjct: 28 DAALREIRKSLLEADVDFKVARSLVARIRERALQLDVIESISAAQHIATVVYE--ELVSL 85 Query: 95 MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 M P P S P VIL+VG+ G GKTT KL++++ + ++ A D R AA Sbjct: 86 MGDP--APLAI-ASMPPTVILMVGLQGSGKTTTTVKLARRLQGSH-NPLVVACDLRRPAA 141 Query: 155 IDQLKIWADRTSADFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 +DQL++ A+ F + G +D + A ++A + DV+++DTAGRLH + LM Sbjct: 142 VDQLRVLAEEARVAFYGPDAGGTDVLEVVRGARQRAADRMNDVILLDTAGRLHLDQELME 201 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + + L PH L VLDA GQ A+ FH TGLI+TK+DG ARGG Sbjct: 202 ELSAIASALP------PHEKLLVLDAMMGQEAVNVARAFHERLALTGLILTKLDGDARGG 255 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + +PV F GVGE + LE F ++ + I G D Sbjct: 256 SALAVRAVTDVPVKFAGVGERTDALEVFDSRRMAGRIMGMGD 297 >gi|254443810|ref|ZP_05057286.1| signal recognition particle protein [Verrucomicrobiae bacterium DG1235] gi|198258118|gb|EDY82426.1| signal recognition particle protein [Verrucomicrobiae bacterium DG1235] Length = 471 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 89/304 (29%), Positives = 154/304 (50%), Gaps = 18/304 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S + KL + ++ + +L ++ + E L+++ L+ +D+ VA+ +E + K Sbjct: 2 FESLTDKLTNAMRNLRGTAKLSEENMAEALKEVRAALLSADVHFKVAKTFIERVKEKCVG 61 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q+++ +++ + +L S + +P I++VG+ G GKTT KL Sbjct: 62 QDVLKTVTPGQQIIKIINDELTALLGEGSTELS---KKKPLKIMMVGLQGGGKTTTTAKL 118 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +K + G K L A D +R AAIDQL+ A + D A+ E ++A A Sbjct: 119 AKSLKKDGYKPRLVACDVYRPAAIDQLETVARQIDVPCFAKRGTPDVPAIGEEGLREALA 178 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D++I DTAGRL + L+ I ++ R ++ P VL V+D GQ A+ + Sbjct: 179 VGDDLIIFDTAGRLQIDDALIEEIKELKRRVQ------PDEVLLVVDGAIGQEAVNVAKT 232 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ TG++MTK+DG ARGG + + ++P+ F G GE ++D + F ++ I Sbjct: 233 FNEAVQLTGIVMTKLDGDARGGAALSMKEITEVPIKFAGTGEKLDDFDVFYPDRMASRIL 292 Query: 312 GCLD 315 G D Sbjct: 293 GMGD 296 >gi|261408023|ref|YP_003244264.1| signal recognition particle protein [Paenibacillus sp. Y412MC10] gi|261284486|gb|ACX66457.1| signal recognition particle protein [Paenibacillus sp. Y412MC10] Length = 460 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/267 (31%), Positives = 135/267 (50%), Gaps = 10/267 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 L+ +D+ V + V ++ K K+V + V+ D+ LM S+ + Sbjct: 39 LLEADVNFKVVKDFVSKVKEKAIGKEVMDSFTPGMVIIDIVNKELTELMGGSQAKLAKSN 98 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P VI++ G+ G GKTT GKL+K + K +L AGD +R AAI QL++ ++ + Sbjct: 99 KPPTVIMMAGLQGAGKTTTSGKLAKLLQKQNSKPLLVAGDIYRPAAIKQLEVLGNQINVP 158 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + +A + + A+ D +IIDTAGRLH + LM + ++ V+ Sbjct: 159 VFSLGDKTSPVEIAKQGLQHAKDNGHDYVIIDTAGRLHVDEELMEELKQIHSVVN----- 213 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P VL V+DA TGQ+A+ E F+ TG+++TK+DG RGG + + P+ F Sbjct: 214 -PDEVLLVVDAMTGQDAVNVAESFNQQLTLTGVVLTKLDGDTRGGAALSVKAVTGCPIKF 272 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +GE I+ LEPF + ++ I G D Sbjct: 273 AALGEKIDALEPFHPERMASRILGMGD 299 >gi|167769126|ref|ZP_02441179.1| hypothetical protein ANACOL_00449 [Anaerotruncus colihominis DSM 17241] gi|167668766|gb|EDS12896.1| hypothetical protein ANACOL_00449 [Anaerotruncus colihominis DSM 17241] Length = 459 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 94/295 (31%), Positives = 148/295 (50%), Gaps = 24/295 (8%) Query: 27 KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SV 81 KLKE +DI + R E+ L+ +D+ VA+ V + K +V Sbjct: 22 KLKE--SDIKEAMR-------EVRLALLEADVNYKVAKDFVAAVTEKAVGDEVLESLTPA 72 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 Q V+ V++ + ++ N+ S P ++++ G+ G GKTT KL+ + G + Sbjct: 73 QMVVKIVNDELTNLMGETGARLNFS-SRPPTIVMMCGLQGSGKTTHSAKLALHFREQGKR 131 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIID 200 +L A D +R AAI+QLK+ ++ A ++G D +A A A+ D++I+D Sbjct: 132 PLLVACDVYRPAAIEQLKVVGEK--AGVPVFDMGQGDPVEIARRAVMHAKDHGNDLVILD 189 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRLH + LM + K IR D +P +L V+DA GQ+A+ F G +G Sbjct: 190 TAGRLHIDEALMDEL-KRIR-----DEVSPQEILLVVDAMVGQDAVNVASAFDEALGISG 243 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG RGG + + PV F+G GE + DLEPF ++ I G D Sbjct: 244 VILTKLDGDTRGGAALSVRAVTGKPVKFVGTGEKLGDLEPFYPDRMASRILGMGD 298 >gi|221134436|ref|ZP_03560741.1| signal recognition particle protein [Glaciecola sp. HTCC2999] Length = 404 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 119/212 (56%), Gaps = 13/212 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+++ G+ G GKTT +GKL+K +S+ KV++ + D +R AAI+QLK A+ Sbjct: 10 AQPPAVVMMAGLQGAGKTTSVGKLAKLLSEREKKKVLVVSADVYRPAAIEQLKTLANDVG 69 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 +F S I + +A A+ + VDVL++DTAGRL A G+M+ +K L Sbjct: 70 VEFFPSNIMQKPIDIVNDAIAHAKKQFVDVLLVDTAGRL-------AIDGEMMNEIKAL- 121 Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 HA P L V+DA TGQ+A + F TG+I+TK DG ARGG + + Sbjct: 122 -HAAVKPVETLFVVDAMTGQDAANTAKAFDETLPLTGVILTKADGDARGGAALSVRHITG 180 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G+GE ++ LEPF + ++ I G D Sbjct: 181 KPIKFIGMGEKLDALEPFHPERMASRILGMGD 212 >gi|90414888|ref|ZP_01222853.1| putative signal recognition particle protein [Photobacterium profundum 3TCK] gi|90324002|gb|EAS40596.1| putative signal recognition particle protein [Photobacterium profundum 3TCK] Length = 455 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 91/305 (29%), Positives = 152/305 (49%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + ++ RL DD +++ L ++ L+ +D+ + V ++ V+ + + Sbjct: 2 FENLTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVKRVKERAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q + V + ++ ++ + P VIL+ G+ G GKTT +GKL Sbjct: 62 SEVSKSLTPGQEFIKIVQAELESVMGESNEALDL-ACQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + K V++ + D +R AAI QL+ A+ DF S + A + Sbjct: 121 GKVLKEREKKNVLVVSADVYRPAAIKQLETLANDIGIDFFPSSAEQKPVDIVSAAVAHGK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DV+I+DTAGRLH + ++M I + + P L V+DA TGQ+A + Sbjct: 181 LKFYDVVIVDTAGRLHVDDVMMDEIKDIHKAAN------PVETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + + P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPNRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|329919858|ref|ZP_08276796.1| signal recognition particle protein [Lactobacillus iners SPIN 1401G] gi|328936948|gb|EGG33378.1| signal recognition particle protein [Lactobacillus iners SPIN 1401G] Length = 475 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 101/317 (31%), Positives = 157/317 (49%), Gaps = 25/317 (7%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A E+LS KL K + K K DI + R E+ L+ +D+ V +K Sbjct: 1 MAFENLS--EKLQKALRKLTGKGKISENDINQASR-------EIRLALLEADVNFKVVKK 51 Query: 66 IVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 ++ + + K+V Q+++ V++ + KM+ + + H P +I++VG+ Sbjct: 52 FIKTIKAEALGKEVQESLNPGQQIIKIVNDELTKMMGSDTASI-IEAKHIPTIIMMVGLQ 110 Query: 121 GVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDA 178 G GKTT +GKL+ + + + +L AGD +R AAIDQLK S D V SE +D Sbjct: 111 GTGKTTTVGKLANYLIKNKKARPLLIAGDIYRPAAIDQLKTIG--ASLDVPVYSENNTDV 168 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 A+ QA D +IIDTAGRL + LM + ++ D P +++ V D Sbjct: 169 VAIVKNGLMQADRNHNDYVIIDTAGRLEIDDQLMDELKNIV------DVAHPENIILVAD 222 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A TGQ A E F++ TGLI+TK+DG RGG + I +P+ F G GE + +L Sbjct: 223 AMTGQVAATVAEGFNSKLKLTGLILTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTEL 282 Query: 299 EPFVAKDFSAVITGCLD 315 + F ++ I G D Sbjct: 283 DTFHPDRMASRILGMGD 299 >gi|45360609|ref|NP_988977.1| signal recognition particle 54kDa [Xenopus (Silurana) tropicalis] gi|38174419|gb|AAH61368.1| signal recognition particle 54 [Xenopus (Silurana) tropicalis] Length = 504 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 109/206 (52%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P+VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 100 KPNVIMFVGLQGSGKTTTCTKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +AYE ++ + + +++I+DT+GR L +M++V + Sbjct: 160 YGSYTEMDPVNIAYEGVEKFKNENFEIVIVDTSGRHKQEDSLFE---EMLQVSNAVQ--- 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 214 PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D EPF + F + + G D Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299 >gi|164688563|ref|ZP_02212591.1| hypothetical protein CLOBAR_02208 [Clostridium bartlettii DSM 16795] gi|164602976|gb|EDQ96441.1| hypothetical protein CLOBAR_02208 [Clostridium bartlettii DSM 16795] Length = 450 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/210 (37%), Positives = 112/210 (53%), Gaps = 10/210 (4%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P +I++VG+ G GKTT GKL G K +L A D +R AAI QL++ S Sbjct: 98 SKPPTIIMMVGLQGAGKTTTSGKLGGYFKKQGKKPLLVACDVYRPAAIKQLEVVG--KSL 155 Query: 168 DFVCSEIG--SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 D +G + +A A D++IIDTAGRLH + LM + K I+ R Sbjct: 156 DIEVFNMGDKENPVNIAKAGLSHAIKNNNDLVIIDTAGRLHIDEELMDEL-KSIKSEVR- 213 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 PH +L V+D+ TGQ+A+ E F G G+++TK+DG RGG + I + P Sbjct: 214 ----PHEILLVVDSMTGQDAVNVAESFDNALGIDGVVLTKLDGDTRGGAALSIRAVTQKP 269 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F+G+GE ++DLEPF ++ I G D Sbjct: 270 IKFIGMGEKLDDLEPFHPDRMASRILGMGD 299 >gi|315653407|ref|ZP_07906329.1| exopolyphosphatase [Lactobacillus iners ATCC 55195] gi|325913497|ref|ZP_08175863.1| signal recognition particle protein [Lactobacillus iners UPII 60-B] gi|315489332|gb|EFU78972.1| exopolyphosphatase [Lactobacillus iners ATCC 55195] gi|325477266|gb|EGC80412.1| signal recognition particle protein [Lactobacillus iners UPII 60-B] Length = 475 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 101/317 (31%), Positives = 157/317 (49%), Gaps = 25/317 (7%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A E+LS KL K + K K DI + R E+ L+ +D+ V +K Sbjct: 1 MAFENLS--EKLQKALRKLTGKGKISENDINQASR-------EIRLALLEADVNFKVVKK 51 Query: 66 IVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 ++ + + K+V Q+++ V++ + KM+ + + H P +I++VG+ Sbjct: 52 FIKTIKAEALGKEVQESLNPGQQIIKIVNDELTKMMGSDTASI-IEAKHIPTIIMMVGLQ 110 Query: 121 GVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDA 178 G GKTT +GKL+ + + + +L AGD +R AAIDQLK S D V SE +D Sbjct: 111 GTGKTTTVGKLANYLIKNKKARPLLIAGDIYRPAAIDQLKTIG--ASLDVPVYSENNTDV 168 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 A+ QA D +IIDTAGRL + LM + ++ D P +++ V D Sbjct: 169 VAIVKNGLMQADRNHNDYVIIDTAGRLEIDDQLMDELKNIV------DVAHPENIILVAD 222 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A TGQ A E F++ TGLI+TK+DG RGG + I +P+ F G GE + +L Sbjct: 223 AMTGQVAATVAEGFNSKLKLTGLILTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTEL 282 Query: 299 EPFVAKDFSAVITGCLD 315 + F ++ I G D Sbjct: 283 DTFHPDRMASRILGMGD 299 >gi|309809516|ref|ZP_07703374.1| signal recognition particle protein [Lactobacillus iners SPIN 2503V10-D] gi|312874520|ref|ZP_07734545.1| signal recognition particle protein [Lactobacillus iners LEAF 2053A-b] gi|308170188|gb|EFO72223.1| signal recognition particle protein [Lactobacillus iners SPIN 2503V10-D] gi|311089911|gb|EFQ48330.1| signal recognition particle protein [Lactobacillus iners LEAF 2053A-b] Length = 475 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 101/317 (31%), Positives = 157/317 (49%), Gaps = 25/317 (7%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A E+LS KL K + K K DI + R E+ L+ +D+ V +K Sbjct: 1 MAFENLS--EKLQKALRKLTGKGKISENDINQASR-------EIRLALLEADVNFKVVKK 51 Query: 66 IVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 ++ + + K+V Q+++ V++ + KM+ + + H P +I++VG+ Sbjct: 52 FIKTIKAEALGKEVQESLNPGQQIIKIVNDELTKMMGSDTASI-IEAKHIPTIIMMVGLQ 110 Query: 121 GVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDA 178 G GKTT +GKL+ + + + +L AGD +R AAIDQLK S D V SE +D Sbjct: 111 GTGKTTTVGKLANYLIKNKKARPLLIAGDIYRPAAIDQLKTIG--ASLDVPVYSENNTDV 168 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 A+ QA D +IIDTAGRL + LM + ++ D P +++ V D Sbjct: 169 VAIVKNGLMQADRNHNDYVIIDTAGRLEIDDQLMDELKNIV------DVAHPENIILVAD 222 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A TGQ A E F++ TGLI+TK+DG RGG + I +P+ F G GE + +L Sbjct: 223 AMTGQVAATVAEGFNSKLKLTGLILTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTEL 282 Query: 299 EPFVAKDFSAVITGCLD 315 + F ++ I G D Sbjct: 283 DTFHPDRMASRILGMGD 299 >gi|238798966|ref|ZP_04642429.1| Signal recognition particle protein [Yersinia mollaretii ATCC 43969] gi|238717195|gb|EEQ09048.1| Signal recognition particle protein [Yersinia mollaretii ATCC 43969] Length = 453 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/212 (37%), Positives = 115/212 (54%), Gaps = 13/212 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT + KL K + + K V++ + D +R AAI QL+ A + S Sbjct: 97 AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKHKKKVLVVSADVYRPAAIKQLETLAQQVS 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S++ + A +QA+ K DVLI+DTAGRLH + +M I ++ Sbjct: 157 IDFFPSDVQEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQI-------- 208 Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 HA P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ FLGVGE LEPF ++ I G D Sbjct: 268 KPIKFLGVGEKTEALEPFHPDRVASRILGMGD 299 >gi|226496107|ref|NP_001142208.1| hypothetical protein LOC100274376 [Zea mays] gi|194702286|gb|ACF85227.1| unknown [Zea mays] gi|194707600|gb|ACF87884.1| unknown [Zea mays] Length = 496 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 112/222 (50%), Gaps = 7/222 (3%) Query: 95 MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 ML P KP +P V++ VG+ G GKTT K + G K L DTFR+ A Sbjct: 86 MLDP-GKPSFTPKKGKPSVVMFVGLQGSGKTTTCTKYAYYHQKKGFKPALVCADTFRAGA 144 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 DQLK A + F S + SD +A E ++ + + D++I+DT+GR + L Sbjct: 145 FDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEAALFEE 204 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + ++ K P V+ V+D++ GQ A Q + F +I+TKMDG A+GGG Sbjct: 205 MRQVSEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIITKMDGHAKGGG 258 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316 + V K PV F+G GE I++ E F K F + + G D+ Sbjct: 259 ALSAVAATKSPVIFIGTGEHIDEFEVFDVKPFVSRLLGMGDW 300 >gi|149911445|ref|ZP_01900062.1| signal recognition particle protein [Moritella sp. PE36] gi|149805476|gb|EDM65483.1| signal recognition particle protein [Moritella sp. PE36] Length = 464 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 94/307 (30%), Positives = 153/307 (49%), Gaps = 31/307 (10%) Query: 30 EGITDIISS---------RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAK 77 E +TD +S+ R +D V++ L ++ L+ +D+ + V ++ ++ + + Sbjct: 3 ENLTDRLSATLKNVSGRGRLTEDNVKDTLREVRMALLEADVALPVVREFIKNVKENALGQ 62 Query: 78 DVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 DVS Q + V + + ++ N + P V+++ G+ G GKTT + KLS Sbjct: 63 DVSKSLNPGQAFIKIVQAELESAMGNANETLNL-AAQPPAVLMMAGLQGAGKTTTVAKLS 121 Query: 133 KKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + K V++ + D +R AAI QL+ A +F S I +A A + A+ Sbjct: 122 LFLKEREKKSVLVVSTDVYRPAAIKQLETLAAEVDVEFFPSNIEQKPVDIANAAIEYARK 181 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQ 248 +DV+I+DTAGRLH ++ +M I D HA P L V+DA TGQ+A Sbjct: 182 SFIDVVIVDTAGRLHVDTDMMQEIQ---------DLHAAINPVETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 F+ TG+I+TK DG ARGG + I P+ F+G+GE I+ LEPF + ++ Sbjct: 233 AAAFNETLPLTGIILTKADGDARGGAALSIRHITGKPIKFIGMGEKIDALEPFHPERIAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|115440231|ref|NP_001044395.1| Os01g0772800 [Oryza sativa Japonica Group] gi|20160917|dbj|BAB89854.1| putative signal recognition particle 54kD protein [Oryza sativa Japonica Group] gi|21743252|dbj|BAC03250.1| putative signal recognition particle 54kD protein [Oryza sativa Japonica Group] gi|32879776|dbj|BAC79360.1| signal recognition particle 54kDa subunit [Oryza sativa Japonica Group] gi|113533926|dbj|BAF06309.1| Os01g0772800 [Oryza sativa Japonica Group] gi|215767979|dbj|BAH00208.1| unnamed protein product [Oryza sativa Japonica Group] gi|222619331|gb|EEE55463.1| hypothetical protein OsJ_03626 [Oryza sativa Japonica Group] Length = 496 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 91/290 (31%), Positives = 143/290 (49%), Gaps = 19/290 (6%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVA-------QKIVE-ELLTKRYAKDVSVQRVLY 86 +I + L D + E+ L++SD+ + ++IV E L K +Q+ ++ Sbjct: 22 VIDEKVLSDCL-NEISRALLQSDVQFKMVRDMQSNIKRIVNLETLAAGTNKRRIIQQAVF 80 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 +EL + ML P KP +P V++ VG+ G GKTT K + G K L Sbjct: 81 --TELCN-MLDP-GKPSFTPKKGKPCVVMFVGLQGSGKTTTCTKYAYYHQRKGFKPALVC 136 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 DTFR+ A DQLK A + F S + SD +A E ++ + + D++I+DT+GR Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHK 196 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + L + ++ K P V+ V+D++ GQ A Q + F +I+TKM Sbjct: 197 QEAALFEEMRQVSEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKM 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316 DG A+GGG + V K PV F+G GE I++ E F K F + + G D+ Sbjct: 251 DGHAKGGGALSAVAATKSPVIFIGTGEHIDEFEVFDVKPFVSRLLGMGDW 300 >gi|242308897|ref|ZP_04808052.1| signal recognition particle protein [Helicobacter pullorum MIT 98-5489] gi|239524561|gb|EEQ64427.1| signal recognition particle protein [Helicobacter pullorum MIT 98-5489] Length = 446 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/274 (31%), Positives = 149/274 (54%), Gaps = 17/274 (6%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 +EL+ L++SD+ V + ++EE+ K + + L + E + +L + P N+ Sbjct: 30 DELKKTLLKSDVHYKVLKSLLEEIEQKTKLAGIGKENFLNALKESLTHIL---TAPGNYG 86 Query: 107 F---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 F P ++L+ G+ G GKTT KL+ + + KV+LAA D R AA++QL+ + Sbjct: 87 FIFAPKPPTIVLMAGLQGSGKTTTTAKLANYLKNKQKKVLLAACDLQRLAAVEQLRQLSL 146 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + DF E S +A A ++A + DVLI+D+AGRL + LM + ++ +K Sbjct: 147 QVEVDFFYEENKS-PIEIAIAAKEKAISGLYDVLIVDSAGRLAIDEDLM----QELQGIK 201 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 D P+ + V+D+ +GQ+ ++ +FH +G+I++K DG ++GG I + + H+ Sbjct: 202 --DSIQPNEIFYVVDSLSGQDGVKSAAIFHEKMDLSGVILSKFDGDSKGG--IALSIAHQ 257 Query: 284 --IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 IP+ F+GVGE I DLE F+ + + G D Sbjct: 258 LGIPLRFIGVGEKIPDLEVFIPQRIVGRLMGAGD 291 >gi|330894530|gb|EGH27191.1| signal recognition particle protein [Pseudomonas syringae pv. mori str. 301020] Length = 458 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 151/306 (49%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRLD-DGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L+ D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNV--KERA 59 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N D P VIL+ G+ G GKTT GK Sbjct: 60 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ D +R AAI QL+ A+ F S+I +A A K+A Sbjct: 120 LARFLKERKKKTVMVVWVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K +DV+I+DTAGRLH + +M I + K P L V+DA TGQ+A Sbjct: 180 RLKFIDVVIVDTAGRLHVDVEMMGEIQALHAATK------PAETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK+DG ARGG + + P+ F+G+GE LEPF ++ Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|117923817|ref|YP_864434.1| signal recognition particle subunit FFH/SRP54 (srp54) [Magnetococcus sp. MC-1] gi|117607573|gb|ABK43028.1| signal recognition particle subunit FFH/SRP54 (srp54) [Magnetococcus sp. MC-1] Length = 462 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/287 (30%), Positives = 149/287 (51%), Gaps = 16/287 (5%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL---YDVSELI 92 +S + + D +RE + L+ +D+ + V + + + K A V V + L V +++ Sbjct: 22 LSEQNIKDALRE-VRIALLEADVNLNVTKAFIRRVQEK--AIGVEVLKSLTPGQQVIKIV 78 Query: 93 HKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGD 148 H L+ + N + P V+++ G+ G GKTT KL+K++ D K +LA+ D Sbjct: 79 HDELVAVMGAANESLNLANQPPVVVMMAGLQGSGKTTSTAKLAKRLIDKERKKCLLASLD 138 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 +R AA+ QL+ ++ A + +E + +A A ++A+ DVL +DTAGRLH + Sbjct: 139 VYRPAAMKQLQTVGEQVGATVLPTEPTENPREIAKRALEEAKKGGFDVLFLDTAGRLHID 198 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM+ + + ++ PH +L V DA TGQ+A+ + F TG++++K DG Sbjct: 199 EALMSELADVAALVN------PHEILFVADAMTGQDAVSVAKNFDDRLNITGVLLSKTDG 252 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ARGG + I P+ FLG GE ++ LEPF ++ I G D Sbjct: 253 DARGGAALSIREVTGKPIKFLGTGEKLDGLEPFHPDRVASRILGMGD 299 >gi|118594463|ref|ZP_01551810.1| Signal recognition particle protein [Methylophilales bacterium HTCC2181] gi|118440241|gb|EAV46868.1| Signal recognition particle protein [Methylophilales bacterium HTCC2181] Length = 450 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 145/286 (50%), Gaps = 15/286 (5%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 + + D +RE + LI +D+ + V + ++++ K +V Q ++ V + Sbjct: 22 FTEENISDAMRE-VRMALIEADVAIPVVKYFIDKVKQKALGAEVLSSISPGQAIIKIVQD 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 + ++ S+ + D + RP V IL+ G+ G GKTT GKL+K +++ K++L + D Sbjct: 81 ELTDLMG--SERSSLDLAARPPVVILMAGLQGSGKTTTAGKLAKILTEEKKKILLVSADV 138 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAIDQLK A D S +A +A K A DV+I DTAGRL + Sbjct: 139 YRPAAIDQLKTLASDLKVDCFNSSAKDKPNDIAKDALKFASKNFHDVIIFDTAGRLGIDE 198 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 +M I + + L +P L V+DA GQ+A+ + F TG+++TK+DG Sbjct: 199 AMMTEIKLLHKTL------SPVETLFVVDAMQGQDAVNTAKAFGDALPLTGIVLTKLDGD 252 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+G+ E N LEPF + ++ I G D Sbjct: 253 SRGGAALSVKHVTGKPIKFVGISEKPNGLEPFYPERMASRILGMGD 298 >gi|312130725|ref|YP_003998065.1| signal recognition particle subunit ffh/srp54 (srp54) [Leadbetterella byssophila DSM 17132] gi|311907271|gb|ADQ17712.1| signal recognition particle subunit FFH/SRP54 (srp54) [Leadbetterella byssophila DSM 17132] Length = 438 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/294 (28%), Positives = 146/294 (49%), Gaps = 8/294 (2%) Query: 22 ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 A +LK K ITDI + + + +R L D + + V K+ +E + ++ V Sbjct: 12 AFKTLKGKGKITDINIASTVKE-IRRALMDADVNYKVAKEVTDKVKQEAIDRKVMIAVEP 70 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 ++ + + LM K + P V+L+ G+ G GKTT GK + + G + Sbjct: 71 GQLFVKIVQEELTALMG-GKAETVNLKGSPAVVLIAGLQGSGKTTFSGKFANYLKKQGKQ 129 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 VML A D +R AAI QL++ ++ D DA +A A +A++K ++I+DT Sbjct: 130 VMLVAADVYRPAAITQLQVLGEQIGVDVYAEPENKDAVNIARNAVAEAKSKGKSIVIVDT 189 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AGRL + ++M + + + + +P +L V+D+ TGQ+A+ + F+ G+ Sbjct: 190 AGRLAVDEVMMTEVENIKKAI------SPSEILFVVDSMTGQDAVNTAKAFNDRLDFDGV 243 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ++TK+DG +RGG + I PV F+ GE + DL+ F ++ I G D Sbjct: 244 VLTKLDGDSRGGAALSIRAVVDKPVKFMSTGEKMEDLDIFHPDRMASRILGMGD 297 >gi|315648170|ref|ZP_07901271.1| signal recognition particle protein [Paenibacillus vortex V453] gi|315276816|gb|EFU40159.1| signal recognition particle protein [Paenibacillus vortex V453] Length = 460 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/267 (31%), Positives = 135/267 (50%), Gaps = 10/267 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 L+ +D+ V + V ++ K K+V + V+ D+ LM S+ + Sbjct: 39 LLEADVNFKVVKDFVSKVKEKAIGKEVMDSFTPGMVIIDIVNKEMTELMGGSQAKLVKSN 98 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P VI++ G+ G GKTT GKL+K + + +L AGD +R AAI QL++ ++ + Sbjct: 99 KPPTVIMMAGLQGAGKTTTSGKLAKLLQKQNSRPLLVAGDIYRPAAIKQLEVLGEQINVP 158 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + +A + + A+ D +IIDTAGRLH + LM + ++ V+ Sbjct: 159 VFSLGDKTSPVEIAKQGLQHAKDNGHDYVIIDTAGRLHVDEELMEELKQIHSVVN----- 213 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P VL V+DA TGQ+A+ E F+ TG+++TK+DG RGG + + P+ F Sbjct: 214 -PDEVLLVVDAMTGQDAVNVAESFNQQLTLTGVVLTKLDGDTRGGAALSVKAVTGCPIKF 272 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +GE I+ LEPF + ++ I G D Sbjct: 273 AALGEKIDALEPFHPERMASRILGMGD 299 >gi|304440220|ref|ZP_07400110.1| signal recognition particle protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371269|gb|EFM24885.1| signal recognition particle protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 445 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/211 (35%), Positives = 112/211 (53%), Gaps = 6/211 (2%) Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 D S P V ++ G+ G GKTT GKL+ +M G + +L A D +R AAI QL++ + Sbjct: 94 LDLSKNPSVFVMAGLQGAGKTTTSGKLALQMKKRGKRPLLVACDVYRPAAIKQLQVVGEG 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + +A + + A+ DV+IIDTAGRLH + LM +++ ++K Sbjct: 154 IDVPVFTMGDKINPVDIAKASIEHAKRNGNDVVIIDTAGRLHVDENLM---DELLNIVKS 210 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 +DP L VLDA TGQ+A+ E F TG+I+TK+DG ARGG + + + Sbjct: 211 VDPQEK---LLVLDAMTGQDAVNVTESFAEKLDLTGVILTKLDGDARGGAALSLRAVTDV 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+ +GE ++ LE F S I G D Sbjct: 268 PIKFISLGEKMDSLEVFYPDRMSNRILGMGD 298 >gi|259501562|ref|ZP_05744464.1| signal recognition particle protein [Lactobacillus iners DSM 13335] gi|302191464|ref|ZP_07267718.1| signal recognition particle protein [Lactobacillus iners AB-1] gi|325911788|ref|ZP_08174192.1| signal recognition particle protein [Lactobacillus iners UPII 143-D] gi|259167080|gb|EEW51575.1| signal recognition particle protein [Lactobacillus iners DSM 13335] gi|325476294|gb|EGC79456.1| signal recognition particle protein [Lactobacillus iners UPII 143-D] Length = 475 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 101/317 (31%), Positives = 157/317 (49%), Gaps = 25/317 (7%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A E+LS KL K + K K DI + R E+ L+ +D+ V +K Sbjct: 1 MAFENLS--EKLQKALRKLTGKGKISENDINQASR-------EIRLALLEADVNFKVVKK 51 Query: 66 IVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 ++ + + K+V Q+++ V++ + KM+ + + H P +I++VG+ Sbjct: 52 FIKTIKAEALGKEVQESLNPGQQIIKIVNDELTKMMGSDTASI-IEAKHIPTIIMMVGLQ 110 Query: 121 GVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDA 178 G GKTT +GKL+ + + + +L AGD +R AAIDQLK S D V SE +D Sbjct: 111 GTGKTTTVGKLANYLIKNKKARPLLIAGDIYRPAAIDQLKTIG--ASLDVPVYSENNTDV 168 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 A+ QA D +IIDTAGRL + LM + ++ D P +++ V D Sbjct: 169 VAIVENGLMQADRNHNDYVIIDTAGRLEIDDQLMDELKNIV------DVAHPENIILVAD 222 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A TGQ A E F++ TGLI+TK+DG RGG + I +P+ F G GE + +L Sbjct: 223 AMTGQVAATVAEGFNSKLKLTGLILTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTEL 282 Query: 299 EPFVAKDFSAVITGCLD 315 + F ++ I G D Sbjct: 283 DTFHPDRMASRILGMGD 299 >gi|218189132|gb|EEC71559.1| hypothetical protein OsI_03915 [Oryza sativa Indica Group] Length = 496 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 91/290 (31%), Positives = 143/290 (49%), Gaps = 19/290 (6%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVA-------QKIVE-ELLTKRYAKDVSVQRVLY 86 +I + L D + E+ L++SD+ + ++IV E L K +Q+ ++ Sbjct: 22 VIDEKVLSDCL-NEISRALLQSDVQFKMVRDMQSNIKRIVNLETLAAGTNKRRIIQQAVF 80 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 +EL + ML P KP +P V++ VG+ G GKTT K + G K L Sbjct: 81 --TELCN-MLDP-GKPSFTPKKGKPCVVMFVGLQGSGKTTTCTKYAYYHQRKGFKPALVC 136 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 DTFR+ A DQLK A + F S + SD +A E ++ + + D++I+DT+GR Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHK 196 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + L + ++ K P V+ V+D++ GQ A Q + F +I+TKM Sbjct: 197 QEAALFEEMRQVSEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKM 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316 DG A+GGG + V K PV F+G GE I++ E F K F + + G D+ Sbjct: 251 DGHAKGGGALSAVAATKSPVIFIGTGERIDEFEVFDVKPFVSRLLGMGDW 300 >gi|330874827|gb|EGH08976.1| signal recognition particle protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 501 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 95/306 (31%), Positives = 152/306 (49%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRLD-DGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L+ D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNV--KERA 59 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N D P VIL+ G+ G GKTT GK Sbjct: 60 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL+ A+ F S+I +A A K+A Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K +D++I+DTAGRLH + +M I + K P L V+DA TGQ+A Sbjct: 180 RLKFIDMVIVDTAGRLHVDVEMMGEIQALHAATK------PAETLFVVDAMTGQDAANTP 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK+DG ARGG + + P+ F+G+GE LEPF ++ Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|313674513|ref|YP_004052509.1| signal recognition particle subunit ffh/srp54 (srp54) [Marivirga tractuosa DSM 4126] gi|312941211|gb|ADR20401.1| signal recognition particle subunit FFH/SRP54 (srp54) [Marivirga tractuosa DSM 4126] Length = 443 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/274 (29%), Positives = 137/274 (50%), Gaps = 13/274 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSK 101 +E+ L+ +D+ VA+ + + + + +DV + Q ++ E + KM+ K Sbjct: 32 KEIRRALVDADVNFKVAKDVTDRIKEEALGRDVLISVSPGQLLVKITQEELAKMMG--EK 89 Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 + P IL+ G+ G GKTT GKL+ ++ G +V+LAA D +R AAIDQLK+ Sbjct: 90 QVDISTEGSPSTILISGLQGSGKTTFSGKLANRLKKQGKQVLLAACDIYRPAAIDQLKVL 149 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 ++ + DA +A A K A+ ++I+DTAGRL + ++M I + + Sbjct: 150 GEQIGVEVYAEPENKDAVKIAKNAIKFAKDNGKSIVIVDTAGRLAVDEVMMKEISSLKKE 209 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 L P L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + I Sbjct: 210 LN------PSETLFVVDSMTGQDAVNTAKTFNEQLDFDGVVLTKLDGDTRGGAALSIRTV 263 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + P+ F+ GE + ++ F + I G D Sbjct: 264 VEKPIKFISSGEKMEAIDLFYPDRMAQRILGMGD 297 >gi|108563516|ref|YP_627832.1| signal recognition particle protein [Helicobacter pylori HPAG1] gi|107837289|gb|ABF85158.1| signal recognition particle protein [Helicobacter pylori HPAG1] Length = 448 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 87/297 (29%), Positives = 154/297 (51%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ VA+++++++ ++ A + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKASGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L L +L LS + F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVL+ Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + ++ VL PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I +P+ F+G GE I DL+ FV + + G D Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291 >gi|291530123|emb|CBK95708.1| signal recognition particle subunit FFH/SRP54 (srp54) [Eubacterium siraeum 70/3] Length = 455 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/278 (32%), Positives = 146/278 (52%), Gaps = 23/278 (8%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPL--S 100 E++ L+ +D+ V + V ++ + +V Q+V+ +++H L+ L + Sbjct: 34 EVKMALLEADVSFPVVKDFVAKVSERAVGSEVMNSLTPAQQVI----DIVHDELIKLMGT 89 Query: 101 KPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 DF +P VI++ G+ G GKTT KL+K + + +L A D +R AAIDQLK Sbjct: 90 DTARIDFPSKPPCVIMMCGLQGAGKTTHTAKLAKYLKKQNRRPLLVACDIYRPAAIDQLK 149 Query: 160 IWADRTSADFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 + S D E+G ++ +A E+ K A+ DV+I+DTAGRLH + LM Sbjct: 150 VVG--ASVDAHVFEMGQTNPVKIAKESIKYAKDNGFDVVILDTAGRLHIDEDLM------ 201 Query: 219 IRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + LK + P+ +L V+D+ TGQ+A+ + F+ + TG+I+TK+DG RGG + Sbjct: 202 -KELKDIKAEVQPNEILLVVDSMTGQDAVNVAKSFNDMLDITGVILTKLDGDTRGGAALS 260 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ++ P+ F GVGE +DLE F + I G D Sbjct: 261 VLSVTGKPIKFAGVGEKTDDLEQFHPNRMADRILGMGD 298 >gi|1711511|sp|P49969|SR542_HORVU RecName: Full=Signal recognition particle 54 kDa protein 2; Short=SRP54 gi|1020002|gb|AAA79355.1| signal recognition particle 54 kDa subunit [Hordeum vulgare] gi|326510077|dbj|BAJ87255.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 497 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 136/276 (49%), Gaps = 18/276 (6%) Query: 48 ELEDLLIRSDIGVAVAQ-------KIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99 E+ L++SD+ + + KIV E L K +Q+ ++ +EL + ML P Sbjct: 34 EISRALLQSDVQFKMVRDMQTNIRKIVNLETLAAGTNKRRIIQQAVF--TELCN-MLDP- 89 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 KP +P V++ VG+ G GKTT K + G K L DTFR+ A DQLK Sbjct: 90 GKPAFTPKKGKPSVVMFVGLQGSGKTTTCTKYAYYHQRKGFKPSLVCADTFRAGAFDQLK 149 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 A + F S + SD +A E ++ + + D++IIDT+GR + L + ++ Sbjct: 150 QNATKAKIPFYGSYMESDPVKIAVEGLERFRKENSDLIIIDTSGRHKQEAALFEEMRQVA 209 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 K P V+ V+D + GQ A Q + F A +I+TK+DG A+GGG + V Sbjct: 210 EATK------PDLVIFVMDGSIGQAAFDQAQAFKQSASVGAVIITKLDGHAKGGGALSAV 263 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 K PV F+G GE I++ E F K F + + G D Sbjct: 264 AATKSPVIFIGTGEHIDEFEIFDVKPFVSRLLGMGD 299 >gi|253573492|ref|ZP_04850835.1| signal recognition particle protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251847020|gb|EES75025.1| signal recognition particle protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 458 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/281 (29%), Positives = 142/281 (50%), Gaps = 13/281 (4%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHK 94 +D V E + ++ L+ +D+ V ++ + ++ K K+V + V+ D+ Sbjct: 25 EDDVNEAMREVRLALLEADVNFKVVKEFIAKVKEKAVGKEVMDSFTPGMVIIDIVNKELT 84 Query: 95 MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 LM S+ + P V+++ G+ G GKTT KL+K + + +L AGD +R AA Sbjct: 85 ELMGGSQAKLARSNRPPTVVMMAGLQGAGKTTTSAKLAKLLLKENHRPLLVAGDIYRPAA 144 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 I QL++ ++ G+ +A +A + A+ D ++IDTAGRLH + LM Sbjct: 145 IKQLQVLGEQIKVPVFTLPEGNSPVEIARQALQHAKDNGNDYVLIDTAGRLHVDEELMEE 204 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + ++ V P VL V+DA TGQ+A+ E F+ TG+++TK+DG RGG Sbjct: 205 LRQIHEVTN------PDEVLLVVDAMTGQDAVNVAESFNQQLTLTGVVLTKLDGDTRGGA 258 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ F +GE I+ LEPF + ++ I G D Sbjct: 259 ALSVKAVTGCPIKFAALGEKIDALEPFHPERMASRILGMGD 299 >gi|209694239|ref|YP_002262167.1| signal recognition particle protein [Aliivibrio salmonicida LFI1238] gi|208008190|emb|CAQ78333.1| signal recognition particle protein [Aliivibrio salmonicida LFI1238] Length = 461 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 98/308 (31%), Positives = 156/308 (50%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL ++ ++E L ++ L+ +D+ + V + V+ + K A Sbjct: 2 FDNLTDRLSKTLKNISGKGRLTEENIKETLREVRMALLEADVALPVVRDFVKRI--KENA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E I + L ++ N P VIL+ G+ G GKTT G Sbjct: 60 VGVEVSKSLTPGQEFIKIVQSELEAIMGDSNEALNL-ACQPPAVILMAGLQGAGKTTSTG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+K + + K V++ + D +R AAI QL++ A DF S + A Sbjct: 119 KLAKLLKERDKKKVLVVSADVYRPAAIKQLEMLASEVDVDFFPSSADQKPIDIVDGAISH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALR 247 A+ K DV+I+DTAGRL ++ +M+ +K+L H P L V+DA TGQ+A Sbjct: 179 AKLKFFDVVIVDTAGRLAVDT-------EMMEEIKQLHAHVNPIETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F + TG+I+TK+DG ARGG + + P+ FLGVGE + LEPF + + Sbjct: 232 TAKAFGDILPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPERIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|167751041|ref|ZP_02423168.1| hypothetical protein EUBSIR_02026 [Eubacterium siraeum DSM 15702] gi|167655959|gb|EDS00089.1| hypothetical protein EUBSIR_02026 [Eubacterium siraeum DSM 15702] Length = 455 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 91/278 (32%), Positives = 146/278 (52%), Gaps = 23/278 (8%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPL--S 100 E++ L+ +D+ V + V ++ + +V Q+V+ +++H L+ L + Sbjct: 34 EVKMALLEADVSFPVVKDFVAKVSERAVGSEVMNSLTPAQQVI----DIVHDELIQLMGT 89 Query: 101 KPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 DF S P VI++ G+ G GKTT KL+K + + +L A D +R AAIDQLK Sbjct: 90 DTARIDFPSKPPCVIMMCGLQGAGKTTHTAKLAKYLKKQNRRPLLVACDIYRPAAIDQLK 149 Query: 160 IWADRTSADFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 + S D E+G ++ +A E+ K A+ DV+I+DTAGRLH + LM Sbjct: 150 VVG--ASVDAHVFEMGQTNPVKIAKESIKYAKDNGFDVVILDTAGRLHIDEDLM------ 201 Query: 219 IRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + LK + P+ +L V+D+ TGQ+A+ + F+ + TG+I+TK+DG RGG + Sbjct: 202 -KELKDIKAEVQPNEILLVVDSMTGQDAVNVAKSFNDMLDITGVILTKLDGDTRGGAALS 260 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ++ P+ F GVGE +DLE F + I G D Sbjct: 261 VLSVTGKPIKFAGVGEKTDDLEQFHPNRMADRILGMGD 298 >gi|27573161|gb|AAO19980.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|27573163|gb|AAO19981.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|27573169|gb|AAO19984.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|27573173|gb|AAO19986.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|36939127|gb|AAQ86943.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|36939164|gb|AAQ86950.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|37623912|gb|AAQ95588.1| regulatory protein [Neisseria gonorrhoeae] gi|37623914|gb|AAQ95589.1| regulatory protein [Neisseria gonorrhoeae] Length = 311 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 66/196 (33%), Positives = 115/196 (58%), Gaps = 2/196 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G A + K+ + + + ++ + + EELE +LI D+G+ + +++++ Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 176 RGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W R + + G D+AA+ ++A + A Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVISQTTG-DSAAVCFDAVQAA 294 Query: 190 QAKKVDVLIIDTAGRL 205 +A+ +D+++ DTAGRL Sbjct: 295 KARGIDIVLADTAGRL 310 >gi|254509217|ref|ZP_05121314.1| signal recognition particle protein [Vibrio parahaemolyticus 16] gi|219547875|gb|EED24903.1| signal recognition particle protein [Vibrio parahaemolyticus 16] Length = 462 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 152/306 (49%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D +++ L ++ L+ +D+ + V + ++ + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFIKRV--KEAA 59 Query: 77 KDVSVQRVLYDVSELIH------KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 V V + L E I + +M S + P VIL+ G+ G GKTT +GK Sbjct: 60 VGVEVSKSLTPGQEFIKIVQGELEAVMGESNEALNLAAQPPAVILMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 LSK + + K V++ + D +R AAI QL+ A DF S +A A A Sbjct: 120 LSKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSADQKPIDIANAAIDHA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVL++DTAGRL + +M I ++ + P L V+DA TGQ+A Sbjct: 180 KKKFYDVLVVDTAGRLAIDEQMMGEIKELHSAID------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK+DG ARGG + + P+ FLGVGE + LEPF ++ Sbjct: 234 KAFGDTLPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|157369096|ref|YP_001477085.1| signal recognition particle protein [Serratia proteamaculans 568] gi|157320860|gb|ABV39957.1| signal recognition particle protein [Serratia proteamaculans 568] Length = 453 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/209 (37%), Positives = 114/209 (54%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT + KL K + + K V++ + D +R AAI QL+ A+ Sbjct: 97 AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAESVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S++ + A +QA+ K DVLI+DTAGRLH + +M I ++ +K Sbjct: 157 IDFFPSDVKEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I P+ Sbjct: 214 ---PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 FLGVGE LEPF ++ I G D Sbjct: 271 KFLGVGEKTEALEPFHPDRVASRILGMGD 299 >gi|330959140|gb|EGH59400.1| signal recognition particle protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 458 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 95/306 (31%), Positives = 153/306 (50%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KERA 59 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N D P VIL+ G+ G GKTT GK Sbjct: 60 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL+ A+ F S+I +A A K+A Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVEIAQAAIKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K +DV+I+DTAGRLH + +M I + +K + L V+DA TGQ+A Sbjct: 180 KLKFIDVVIVDTAGRLHVDVEMMGEIQALHAAVKSAE------TLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK+DG ARGG + + P+ F+G+GE LEPF ++ Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|254481747|ref|ZP_05094990.1| signal recognition particle protein [marine gamma proteobacterium HTCC2148] gi|214037876|gb|EEB78540.1| signal recognition particle protein [marine gamma proteobacterium HTCC2148] Length = 468 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 97/308 (31%), Positives = 149/308 (48%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + I L +D ++E L ++ L+ +D+ + V ++ VE + + Sbjct: 2 FQSLSDRLSNSLRSISGKATLTEDNIQETLREVRMALLEADVALPVVKQFVESVKQRAVG 61 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V Q L V + ++ ++ N + P VIL+ G+ G GKTT + KL Sbjct: 62 QEVMKSLSPGQVFLKIVQSELESVMGSANEGLNL-ATQPPAVILMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + K V + + D +R AAI QL+ A DF SE +A A A+ Sbjct: 121 AKLLKERDKKKVTVVSADVYRPAAIKQLETLAAEVGVDFFPSESSEKPVDIATAALSHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 DVLI+DTAGRL + +MA I ++ HA P L V+DA TGQ+A Sbjct: 181 KSFSDVLIVDTAGRLAVDEDMMAEIAQL---------HASVNPIETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F TG+I+TK+D RGG + + P+ FLGVGE I L+PF + Sbjct: 232 TAKAFGETLPLTGVILTKVDADTRGGAALSVRSITGKPIKFLGVGEKIAALDPFHPDRLA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|188585994|ref|YP_001917539.1| signal recognition particle subunit FFH/SRP54 (srp54) [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350681|gb|ACB84951.1| signal recognition particle subunit FFH/SRP54 (srp54) [Natranaerobius thermophilus JW/NM-WN-LF] Length = 447 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/211 (35%), Positives = 116/211 (54%), Gaps = 7/211 (3%) Query: 106 DFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 +FS +P VI++ G+ G GKTT KL+KK G ++ A DT R AAI QL++ ++ Sbjct: 94 NFSDQPPTVIMLSGLQGTGKTTASAKLAKKFKKDGKNPLMVACDTQRPAAIKQLQVLGEQ 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 T A +A A + A+ ++DV+I+DTAGRLH + LM + ++ ++ Sbjct: 154 TDIPVFSMGDKQHPADIAKGAVEHAKKNQMDVVILDTAGRLHIDEDLMTELREVESSVE- 212 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 PH +L V+DA TGQ+A+ E F +G++MTK+DG RGG + + Sbjct: 213 -----PHEILLVVDAMTGQDAVNVAERFDQDLDLSGIVMTKLDGDTRGGAALSVKKVTGK 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE +++LE F ++ I G D Sbjct: 268 PIKFIGTGEKVDELEVFHPDRLASRILGMGD 298 >gi|148223543|ref|NP_001080564.1| signal recognition particle 54kDa [Xenopus laevis] gi|27924197|gb|AAH44991.1| Srp54 protein [Xenopus laevis] Length = 504 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 109/206 (52%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P+VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 100 KPNVIMFVGLQGSGKTTTCTKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +AYE ++ + + +++I+DT+GR L +M++V + Sbjct: 160 YGSYTEMDPVNIAYEGVEKFKNENFEIVIVDTSGRHKQEDSLFE---EMLQVSNAVQ--- 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 214 PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D EPF + F + + G D Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299 >gi|27573185|gb|AAO19992.1| regulatory protein PilA [Neisseria gonorrhoeae] Length = 311 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 67/196 (34%), Positives = 116/196 (59%), Gaps = 2/196 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G A + K+ + + + ++ + + EELE +LI D+G+ + +++++ Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 176 RGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W R + V S+ D+AA+ ++A + A Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVT-VISQTTGDSAAVCFDAVQAA 294 Query: 190 QAKKVDVLIIDTAGRL 205 +A+ +D+++ DTAGRL Sbjct: 295 KARGIDIVLADTAGRL 310 >gi|222528961|ref|YP_002572843.1| signal recognition particle protein [Caldicellulosiruptor bescii DSM 6725] gi|222455808|gb|ACM60070.1| signal recognition particle protein [Caldicellulosiruptor bescii DSM 6725] Length = 443 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/201 (37%), Positives = 105/201 (52%), Gaps = 6/201 (2%) Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 ++VG+ G GKTT GKL+ + G +L A D +R AAI QL++ A + Sbjct: 104 MMVGLQGSGKTTTAGKLAGLLKRQGKNPLLVACDIYRPAAIKQLEVVAQKVGVKCFADYN 163 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 DA +A E + A+ + DV I+DTAGRLH N LM + + +K P +L Sbjct: 164 SKDAVKIAKEGIEFAKVSRCDVAIVDTAGRLHINQELMDELVAIKNAIK------PTEIL 217 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VLDA TGQ+A+ F+ G G+IMTK+DG RGG + + P+ F GVGE Sbjct: 218 LVLDAMTGQDAVNVAAAFNEQLGIDGIIMTKLDGDTRGGAALSVKAITGKPIKFAGVGEK 277 Query: 295 INDLEPFVAKDFSAVITGCLD 315 + DLE F ++ I G D Sbjct: 278 MEDLEAFHPDRMASRILGMGD 298 >gi|159042909|ref|YP_001531703.1| signal recognition particle protein [Dinoroseobacter shibae DFL 12] gi|157910669|gb|ABV92102.1| signal recognition particle protein [Dinoroseobacter shibae DFL 12] Length = 504 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/256 (33%), Positives = 133/256 (51%), Gaps = 10/256 (3%) Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 AV +K + +TK V ++++D EL+H +L P + P IL+VG+ Sbjct: 54 AVQEKATGQAVTKSVTPGQQVVKIVHD--ELVH-VLQGDEDPGALKIDNPPAPILMVGLQ 110 Query: 121 GVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 G GKTT K++K++ + G K+++A+ D R AA++QL I + D + G D Sbjct: 111 GGGKTTTTAKIAKRLKERDGKKILMASLDVNRPAAMEQLAILGAQIGVDTLPIVKGEDPV 170 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+A A QA DV ++DTAGRL + LMA + + +R D P L V+D Sbjct: 171 AIARRAKTQASLGGYDVYMLDTAGRLSIDEELMAQV-EAVR-----DVANPRETLLVVDG 224 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQ+A+ E F G TG+++T+MDG RGG + + P+ F+G+GE ++ LE Sbjct: 225 LTGQDAVTTAENFDDRIGITGVVLTRMDGDGRGGAALSMRAVTGRPIRFVGLGEKMDALE 284 Query: 300 PFVAKDFSAVITGCLD 315 F + I G D Sbjct: 285 TFEPDRVAGRILGMGD 300 >gi|254449728|ref|ZP_05063165.1| signal recognition particle protein [Octadecabacter antarcticus 238] gi|198264134|gb|EDY88404.1| signal recognition particle protein [Octadecabacter antarcticus 238] Length = 502 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/286 (31%), Positives = 149/286 (52%), Gaps = 21/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVS--------VQRVLYDVSE 90 +D V+ L ++ L+ +D+ + VA+ +++ + K + V+ V ++++D E Sbjct: 24 EDDVKTALREVRIALLEADVSLPVARDLIKAVQEKASGQSVTKSVTPGQQVVKIVHD--E 81 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDT 149 L+H +L P + P IL+VG+ G GKTT KL+K++ D G KV++A+ D Sbjct: 82 LVH-VLQGDGDPGALKIDNPPAPILMVGLQGSGKTTTTAKLAKRLKDREGKKVLMASLDV 140 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 R AA++QL+I + D + G D +A A A DV I+DTAGRLH ++ Sbjct: 141 NRPAAMEQLQILGAQIGVDTLPIVKGEDPVQIAKRAKTAAAMGGYDVYILDTAGRLHIDA 200 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 L+A + V + P L V+D TGQ+A+ F G TG+++T+MDG Sbjct: 201 ELIAQAAAVRDVAQ------PRETLLVVDGLTGQDAVNVATEFDDKIGVTGVVLTRMDGD 254 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + + P+ F+G+GE ++ +E F A+ + I G D Sbjct: 255 GRGGAALSMRAVTGKPIRFVGLGEKLDAIEEFHAERVAGRILGMGD 300 >gi|77919819|ref|YP_357634.1| signal recognition particle protein [Pelobacter carbinolicus DSM 2380] gi|77545902|gb|ABA89464.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pelobacter carbinolicus DSM 2380] Length = 451 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 145/286 (50%), Gaps = 16/286 (5%) Query: 39 RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 R +D +++ + ++ L+ +D+ V + V + + ++V Q+V+ V + Sbjct: 23 RLTEDNIKQSMREVRLVLLEADVNFRVVKNFVATVRERAVGQEVLKSLNPAQQVIKVVRD 82 Query: 91 LIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 + + LM + + D + RP V I++ G+ G GKTT GKL+ ++ +L D Sbjct: 83 ELGR-LMGEGEDNSLDLAARPPVPIMLCGLQGAGKTTSCGKLALQLRRQKRNPLLVPADV 141 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI+QLK + + S D L +A + A+ D LI+DTAGRLH + Sbjct: 142 YRPAAIEQLKTLGKQLNIPVFDSNPDVDPVKLCTDAREFAELNGYDTLILDTAGRLHVDQ 201 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 LMA + ++ + L+ P +L V DA TGQ+A+ E F TG+I+TK+DG Sbjct: 202 ELMAELQRIKQALQ------PREILFVADAMTGQDAVNVAESFDQQLDVTGVILTKLDGD 255 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ARGG + I P+ F+G+GE ++ LE F + I G D Sbjct: 256 ARGGAALSIRAVTGKPIKFVGLGEKLDALEVFHGDRMAQRILGMGD 301 >gi|224541338|ref|ZP_03681877.1| hypothetical protein CATMIT_00498 [Catenibacterium mitsuokai DSM 15897] gi|224525775|gb|EEF94880.1| hypothetical protein CATMIT_00498 [Catenibacterium mitsuokai DSM 15897] Length = 463 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 93/307 (30%), Positives = 157/307 (51%), Gaps = 22/307 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDGVREE-LEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L+E + + L + EE L ++ L+ +D+ V ++ + K Sbjct: 3 FESLSDRLQETLKKVTGQATLTESNMEEMLREIRLALLEADVNYQVVKEFIANTKEKAIG 62 Query: 77 KDV----SVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++V +VL +++H L+ L ++ D+S P +I++VG+ G GKTT GK Sbjct: 63 QNVIGSLKPGQVLV---KIVHDELVSLLGTEMVTVDYSKDPTIIMMVGLQGSGKTTTAGK 119 Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 ++K +++ G K +L AGD +R AAIDQLK + + + + EA +A Sbjct: 120 IAKLITEKQGKKPLLVAGDIYRPAAIDQLKTLGAQLNIPVFSKGTDTPVETIVTEALAKA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DV+IIDTAGRL + LM + + + P +L V+D+ GQ + Sbjct: 180 RDDHNDVVIIDTAGRLQIDEKLMQELANVKEIAH------PDEILLVVDSLAGQEIVNVA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIV-VTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 F+ G TG ++TK+DG ARGGG + I VTH +P+ ++G GE +++++ F + Sbjct: 234 STFNERLGITGAVLTKLDGDARGGGALSIRHVTH-VPIKYIGTGEKLDEIDYFYPDRMAD 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|254467983|ref|ZP_05081389.1| signal recognition particle protein [beta proteobacterium KB13] gi|207086793|gb|EDZ64076.1| signal recognition particle protein [beta proteobacterium KB13] Length = 451 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 92/289 (31%), Positives = 146/289 (50%), Gaps = 23/289 (7%) Query: 37 SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDV 88 + + D +RE + LI +D+ + V + ++++ K +V ++ +++ D Sbjct: 23 TEENISDAMRE-VRIALIEADVAIPVVKFFIDQVKEKAIGTEVLKTVSPGDAIVKIVQD- 80 Query: 89 SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 EL + ++ P + P N + P VIL+ G+ G GKTT KL+K + + KVML + D Sbjct: 81 -ELTN-LMGPENVPLNLE-KKPPSVILMAGLQGSGKTTTSAKLAKLLKEQKKKVMLVSAD 137 Query: 149 TFRSAAIDQLKIWADRTSADFVC--SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 +R AAIDQLK A S D C S +A ++ A+ DV+I DTAGR Sbjct: 138 VYRPAAIDQLKTLA--ASIDVECYDSTEKDKPIKIAEKSIDYAKKHFFDVVIFDTAGRTA 195 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + +M I + +VLK P L V+D+ GQ+A+ F+ TG+++TK+ Sbjct: 196 IDEKMMKEIQALHKVLK------PAETLFVVDSMQGQDAINTASAFNDALELTGIVLTKI 249 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG +RGG + P+ F+GV E IN +EPF +A I G D Sbjct: 250 DGDSRGGAALSAKHIIGKPIKFVGVNEKINGIEPFYPDRLAARILGMGD 298 >gi|149192337|ref|ZP_01870543.1| signal recognition particle protein [Vibrio shilonii AK1] gi|148833832|gb|EDL50863.1| signal recognition particle protein [Vibrio shilonii AK1] Length = 459 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 100/306 (32%), Positives = 151/306 (49%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL DD +++ L ++ L+ +D+ + V + ++ + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTDDNIKDTLREVRMALLEADVALPVVRDFIKGV--KERA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPH-VILVVGVNGVGKTTVIGK 130 V V + L E I + L D + +P VIL+ G+ G GKTT +GK Sbjct: 60 VGVEVSKSLTPGQEFIKIVQAELESVMGESNEALDLAAQPPAVILMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 LSK + + K V++ + D +R AAI QL+ A DF S +A A A Sbjct: 120 LSKLLHERDKKKVLVVSADVYRPAAIKQLETLATDIGVDFFPSSADQKPIDIANAAIDHA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVLI+DTAGRL + +M I + + P L V+DA TGQ+A Sbjct: 180 KKKFYDVLIVDTAGRLAVDHEMMDEIKDLHSAIN------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK+DG ARGG + + PV FLGVGE + LEPF ++ Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPVKFLGVGEKTDALEPFHPDRVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|124359738|gb|ABN06080.1| GTP-binding signal recognition particle SRP54, G-domain [Medicago truncatula] Length = 341 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 91/275 (33%), Positives = 144/275 (52%), Gaps = 29/275 (10%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEEL-- 70 +LT G S KLK ++++ D + E + D+ L+ +D+ + V ++ V+ + Sbjct: 70 QLTTGLESAWNKLKG--EEVLTK----DNIVEPMRDIRRALLEADVSLPVVRRFVQSVTD 123 Query: 71 ------LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVG 123 +T+ D + ++++D EL+ M +S+ F+ P VIL+ G+ GVG Sbjct: 124 QAVGVGVTRGVKPDQQLVKIVHD--ELVQLMGGEVSE---LTFAKTGPTVILLAGLQGVG 178 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTTV KL+ G ML AGD +R AAIDQL I + + + +A Sbjct: 179 KTTVCAKLANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAK 238 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 + F++A+ KK+DV+I+DTAGRL + +M + + RVL P VL V+DA TGQ Sbjct: 239 QGFEEAKKKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLN------PTEVLLVVDAMTGQ 292 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 A V F+ G TG I+TK+DG +RGG + + Sbjct: 293 EAAALVTTFNLEIGITGAILTKLDGDSRGGAALSV 327 >gi|27573165|gb|AAO19982.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|27573171|gb|AAO19985.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|27573179|gb|AAO19989.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|27573181|gb|AAO19990.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|27573187|gb|AAO19993.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|27573189|gb|AAO19994.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|37623916|gb|AAQ95590.1| regulatory protein [Neisseria gonorrhoeae] Length = 311 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 66/196 (33%), Positives = 115/196 (58%), Gaps = 2/196 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G A + K+ + + + ++ + + EELE +LI D+G+ + +++++ Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 176 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W R + + G D+AA+ ++A + A Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVISQTTG-DSAAVCFDAVQAA 294 Query: 190 QAKKVDVLIIDTAGRL 205 +A+ +D+++ DTAGRL Sbjct: 295 KARGIDIVLADTAGRL 310 >gi|242054557|ref|XP_002456424.1| hypothetical protein SORBIDRAFT_03g036030 [Sorghum bicolor] gi|241928399|gb|EES01544.1| hypothetical protein SORBIDRAFT_03g036030 [Sorghum bicolor] Length = 496 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 116/228 (50%), Gaps = 8/228 (3%) Query: 89 SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 +EL + ML P KP +P V++ VG+ G GKTT K + G K L D Sbjct: 81 TELCN-MLDP-GKPSFTPKKGKPSVVMFVGLQGSGKTTTCTKYAYYHQRKGFKPALVCAD 138 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+ A DQLK A + F S + SD +A E ++ + + D++I+DT+GR Sbjct: 139 TFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQE 198 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 + L + ++ K P V+ V+D++ GQ A Q + F +I+TKMDG Sbjct: 199 AALFEEMRQVSEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIITKMDG 252 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316 A+GGG + V K PV F+G GE I++ E F K F + + G D+ Sbjct: 253 HAKGGGALSAVAATKSPVIFIGTGEHIDEFEVFDVKPFVSRLLGMGDW 300 >gi|1711508|sp|P49968|SR541_HORVU RecName: Full=Signal recognition particle 54 kDa protein 1; Short=SRP54 gi|1020000|gb|AAA79354.1| signal recognition particle 54 kDa subunit [Hordeum vulgare] Length = 497 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 136/276 (49%), Gaps = 18/276 (6%) Query: 48 ELEDLLIRSDIGVAVAQ-------KIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99 E+ L++SD+ + + KIV E L K +Q+ ++ +EL + ML P Sbjct: 34 EISRALLQSDVQFKMVRDMQTNIRKIVNLETLAAGTNKRRIIQQAVF--TELCN-MLDP- 89 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 KP +P V++ VG+ G GKTT K + G K L DTFR+ A DQLK Sbjct: 90 GKPAFTTKKGKPSVVMFVGLQGSGKTTTCTKYAYYHQRKGFKPSLVCADTFRAGAFDQLK 149 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 A + F S + SD +A E ++ + + D++IIDT+GR + L + ++ Sbjct: 150 QNATKAKIPFYGSYMESDPVKIAVEGLERFRKENSDLIIIDTSGRHKQEAALFEEMRQVA 209 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 K P V+ V+D + GQ A Q + F A +I+TK+DG A+GGG + V Sbjct: 210 EATK------PDLVIFVMDGSIGQAAFDQAQAFKQSASVGAVIITKLDGHAKGGGALSAV 263 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 K PV F+G GE I++ E F K F + + G D Sbjct: 264 AATKSPVIFIGTGEHIDEFEIFDVKPFVSRLLGMGD 299 >gi|206890926|ref|YP_002249714.1| signal recognition particle protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742864|gb|ACI21921.1| signal recognition particle protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 440 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/264 (31%), Positives = 132/264 (50%), Gaps = 12/264 (4%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLM 97 D +E+ L+ +D+ V + +E + K K++ Q+V+ V E + ++L Sbjct: 28 DAALKEIRIALLEADVNFKVVKAFIERVRQKAVGKEILESLSPAQQVIKIVYEELCELLG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 + + P +I++VG++G GKTT KL++ G + ML A D R AAI+Q Sbjct: 88 GSTSKIKLS-PNPPTIIMMVGLHGSGKTTTSAKLARLFKKQGRRPMLVAADLQRPAAIEQ 146 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L + S D L +A K+A + D +I+DTAGR+H + LM + Sbjct: 147 LVTLGKQIDVPVFHSYEIKDPRELCKDALKKAVIDRADPVIVDTAGRMHVDEELMRELQD 206 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + VL PH +L V DA TGQ+A+ + FH G G+I+TKMDG ARGG + Sbjct: 207 VKNVLN------PHEILFVADAMTGQDAVNIAKSFHEKIGIDGVILTKMDGDARGGAALS 260 Query: 278 IVVTHKIPVYFLGVGEGINDLEPF 301 I P+ +G GE I+ ++ F Sbjct: 261 IKEVTGKPIKLIGTGEKIDAIDEF 284 >gi|74318391|ref|YP_316131.1| signal recognition particle subunit FFH/SRP54 (srp54) [Thiobacillus denitrificans ATCC 25259] gi|74057886|gb|AAZ98326.1| Signal recognition particle protein [Thiobacillus denitrificans ATCC 25259] Length = 447 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/275 (32%), Positives = 137/275 (49%), Gaps = 26/275 (9%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE------LIHKMLMPLSKPFNWD 106 L+ +D+ + V + ++ + + Q VL +S ++H+ L L N D Sbjct: 38 LLEADVALPVVKSFIDAVKARALG-----QEVLTSLSPGQALIGIVHEELTRLMGGENAD 92 Query: 107 F---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 + P VIL+ G+ G GKTT GKL+ + + KV+LA+ D +R AAIDQL+ A Sbjct: 93 LNLAATPPAVILMAGLQGSGKTTTSGKLALLLKNRKKKVLLASADVYRPAAIDQLRQLAK 152 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + F ++ D +A A A+ + DVLI+DTAGRL + +M I + Sbjct: 153 QLDVSFFDADSERDPLKIARAAQDHARKQFYDVLIVDTAGRLAIDEAMMNEIKAL----- 207 Query: 224 RLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 HA P L V+DA GQ+A+ F+ TG+++TK+DG ARGG + + Sbjct: 208 ----HAAITPVETLFVVDAMQGQDAVNVARAFNEALPLTGVVLTKLDGDARGGAALSVRQ 263 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+GVGE N LEPF + + I G D Sbjct: 264 ITGKPLKFIGVGEKPNGLEPFHPERMAQRILGMGD 298 >gi|315185661|gb|EFU19429.1| signal recognition particle subunit FFH/SRP54 (srp54) [Spirochaeta thermophila DSM 6578] Length = 443 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/203 (35%), Positives = 103/203 (50%), Gaps = 6/203 (2%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +IL+ G+ G GKTT KL+ + G + +L A D R AAIDQL+ Sbjct: 103 IILLAGLQGSGKTTTAAKLALHLKKKGRRPLLVAADLARPAAIDQLETLGASIDVPVYTD 162 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 D A+ A A+ + VD LI+DTAGR + LM + +++R L +P Sbjct: 163 RSQKDPRAVVKRALSHAKRQAVDTLIVDTAGRHQVDRELMDELSRLVRDL------SPDE 216 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 L V DA TGQ A+ + F+ G TG+++TK D RGG + I P+ F+GVG Sbjct: 217 ALLVADAMTGQTAVDVAKAFNEAVGITGVVLTKFDSDTRGGAALSIRTITGAPIKFIGVG 276 Query: 293 EGINDLEPFVAKDFSAVITGCLD 315 E ++DLEPF ++ I G D Sbjct: 277 EKVDDLEPFYPDRIASRILGMGD 299 >gi|309805506|ref|ZP_07699551.1| signal recognition particle protein [Lactobacillus iners LactinV 09V1-c] gi|312874462|ref|ZP_07734492.1| signal recognition particle protein [Lactobacillus iners LEAF 2052A-d] gi|308165157|gb|EFO67395.1| signal recognition particle protein [Lactobacillus iners LactinV 09V1-c] gi|311090074|gb|EFQ48488.1| signal recognition particle protein [Lactobacillus iners LEAF 2052A-d] Length = 475 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 99/316 (31%), Positives = 156/316 (49%), Gaps = 23/316 (7%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A E+LS KL K + K K DI + R E+ L+ +D+ V +K Sbjct: 1 MAFENLS--EKLQKALRKLTGKGKISENDINQASR-------EIRLALLEADVNFKVVKK 51 Query: 66 IVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 ++ + + K+V Q+++ V++ + KM+ + + H P +I++VG+ Sbjct: 52 FIKTIKAEALGKEVQESLNPGQQIIKIVNDELTKMMGSDTASI-IEAKHIPTIIMMVGLQ 110 Query: 121 GVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 G GKTT +GKL+ + + + +L AGD +R AAIDQLK + V SE +D Sbjct: 111 GTGKTTTVGKLANYLIKNKKARPLLIAGDIYRPAAIDQLKTIGASLNVP-VYSENNTDVV 169 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ QA D +IIDTAGRL + LM + ++ D P +++ V DA Sbjct: 170 AIVENGLMQADRNHNDYVIIDTAGRLEIDDQLMDELKNIV------DVAHPENIILVADA 223 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQ A E F++ TGLI+TK+DG RGG + I +P+ F G GE + +L+ Sbjct: 224 MTGQVAATVAEGFNSKLKLTGLILTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTELD 283 Query: 300 PFVAKDFSAVITGCLD 315 F ++ I G D Sbjct: 284 TFHPDRMASRILGMGD 299 >gi|27573159|gb|AAO19979.1| regulatory protein PilA [Neisseria gonorrhoeae] Length = 311 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 66/196 (33%), Positives = 115/196 (58%), Gaps = 2/196 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G A + K+ + + + ++ + + EELE +LI D+G+ + +++++ Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 176 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W R + + G D+AA+ ++A + A Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVISQATG-DSAAVCFDAVQAA 294 Query: 190 QAKKVDVLIIDTAGRL 205 +A+ +D+++ DTAGRL Sbjct: 295 KARGIDIVLADTAGRL 310 >gi|312871860|ref|ZP_07731944.1| signal recognition particle protein [Lactobacillus iners LEAF 3008A-a] gi|312872406|ref|ZP_07732475.1| signal recognition particle protein [Lactobacillus iners LEAF 2062A-h1] gi|311091988|gb|EFQ50363.1| signal recognition particle protein [Lactobacillus iners LEAF 2062A-h1] gi|311092582|gb|EFQ50942.1| signal recognition particle protein [Lactobacillus iners LEAF 3008A-a] Length = 475 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 99/316 (31%), Positives = 156/316 (49%), Gaps = 23/316 (7%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A E+LS KL K + K K DI + R E+ L+ +D+ V +K Sbjct: 1 MAFENLS--EKLQKALRKLTGKGKISENDINQASR-------EIRLALLEADVNFKVVKK 51 Query: 66 IVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 ++ + + K+V Q+++ V++ + KM+ + + H P +I++VG+ Sbjct: 52 FIKTIKAEALGKEVQESLNPGQQIIKIVNDELTKMMGSDTASI-IEAKHIPTIIMMVGLQ 110 Query: 121 GVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 G GKTT +GKL+ + + + +L AGD +R AAIDQLK + V SE +D Sbjct: 111 GTGKTTTVGKLANYLIKNKKARPLLIAGDIYRPAAIDQLKTIGASLNVP-VYSENNTDVV 169 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ QA D +IIDTAGRL + LM + ++ D P +++ V DA Sbjct: 170 AIVENGLMQADRNHNDYVIIDTAGRLEIDDQLMDELKNIV------DVAHPENIILVADA 223 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQ A E F++ TGLI+TK+DG RGG + I +P+ F G GE + +L+ Sbjct: 224 MTGQVAATVAEGFNSKLKLTGLILTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTELD 283 Query: 300 PFVAKDFSAVITGCLD 315 F ++ I G D Sbjct: 284 TFHPDRMASRILGMGD 299 >gi|309389191|gb|ADO77071.1| signal recognition particle subunit FFH/SRP54 (srp54) [Halanaerobium praevalens DSM 2228] Length = 446 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 93/306 (30%), Positives = 152/306 (49%), Gaps = 20/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F+S + KL++ + +L + +E++ L+ +D+ V + ++++ + Sbjct: 3 FSSLAEKLQDTFNKLKGKGKLSEKDVKAALKEVKMALLEADVNYKVVKDFIKKIEERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V Q V+ V+E + LM SK S P +I++VG+ G GKTT GKL Sbjct: 63 NEVMESLTPGQHVIKIVNEEMQ-ALMGGSKEDIAISSEPPTIIMMVGLQGSGKTTSAGKL 121 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQA 189 ++K+ G +L AGD +R AAI QL++ +R D +G D+ +A + A Sbjct: 122 ARKLDKDGKNPLLVAGDVYRPAAIRQLQVLGERL--DLPVFSMGDDSNPVDIAKGSINYA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + D +I+DTAGRLH + +M + + + P +L V+DA TGQ+A+ Sbjct: 180 SSHNCDTIILDTAGRLHIDQEMMEELESIKAAVD------PDEILLVVDAMTGQDAVNVA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F G+++TKMDG ARGG + I P+ F G GE + DLE F S+ Sbjct: 234 KNFDQRLDVDGIVLTKMDGDARGGAALSIKAITGKPIKFAGTGEKLADLETFHPDRMSSR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|313680228|ref|YP_004057967.1| signal recognition particle subunit ffh/srp54 (srp54) [Oceanithermus profundus DSM 14977] gi|313152943|gb|ADR36794.1| signal recognition particle subunit FFH/SRP54 (srp54) [Oceanithermus profundus DSM 14977] Length = 434 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/305 (29%), Positives = 146/305 (47%), Gaps = 19/305 (6%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQ----KIVEELLT 72 F + S +L++ + + R+ + V E+ L+ +D+ VA+ ++ E+ L Sbjct: 2 FENLSRRLQQTLDGLRGRGRIGEADLKKVMREIRMSLLEADVNFEVAKAFTKRVQEKALG 61 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++ + ++ +Y + ++ L L S+P + H +V +VG+ G GKTT GK Sbjct: 62 QKVYESLTPAEQIYTI---VYDELKELLGSEPKQPELKHEGNVWFLVGLQGTGKTTAAGK 118 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L++ G + +L A DT R AA DQL+I A++ + + G A A + Sbjct: 119 LARLYKSKGRRPLLVAADTQRPAARDQLRILAEQVGVPVLEVQNGEKPAETARRLREHLA 178 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 D++I+DTAGRL + LM + ++ D P L V+DA GQ AL Sbjct: 179 KDYRDLVIVDTAGRLQIDEALMDELAQLK------DELEPTETLLVVDAMMGQEALGVSR 232 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G +GLI+TK+DG ARGG + P+YF G E ++ LEPF + I Sbjct: 233 TFDERIGVSGLILTKLDGDARGGAALSARYVTGKPIYFGGTSEKLDGLEPFYPDRLAQRI 292 Query: 311 TGCLD 315 G D Sbjct: 293 LGMGD 297 >gi|294675927|ref|YP_003576542.1| signal recognition particle protein [Rhodobacter capsulatus SB 1003] gi|294474747|gb|ADE84135.1| signal recognition particle protein [Rhodobacter capsulatus SB 1003] Length = 502 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/274 (32%), Positives = 141/274 (51%), Gaps = 12/274 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ + V + V+++ TK V+ Q+V+ V + I ML Sbjct: 33 EVRTALLEADVSLPVVRDFVKKVETKATGAQVTKSITPGQQVVKIVHDEIVAMLSGEDAA 92 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIW 161 + P IL+VG+ G GKTT KL++++ + K V++A+ D +R AA++QL I Sbjct: 93 DALKIDNPPAPILMVGLQGGGKTTTTAKLARRLKEREKKRVLMASLDIYRPAAMEQLAIL 152 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 + D + G A +A A QA DV ++DTAGRLH + +LM + + +R Sbjct: 153 GTQIGVDTLPIVPGETAVQIAKRAKTQAAMGGYDVYLLDTAGRLHIDEVLMGEV-QQVR- 210 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 D +P L V+D TGQ A+ + F G TG+++T+MDG RGG + + T Sbjct: 211 ----DAVSPRETLLVVDGLTGQVAVEVAQEFDDKIGITGVVLTRMDGDGRGGAALSMRAT 266 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G+GE ++ LE F A + I G D Sbjct: 267 TGKPIRFVGLGEKMDALETFEASRIAGRILGMGD 300 >gi|303273580|ref|XP_003056150.1| type II secretory pathway family protein [Micromonas pusilla CCMP1545] gi|226462234|gb|EEH59526.1| type II secretory pathway family protein [Micromonas pusilla CCMP1545] Length = 559 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 92/275 (33%), Positives = 139/275 (50%), Gaps = 23/275 (8%) Query: 53 LIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD-- 106 L+ +D+ + V ++ ++ + K + K VS + L V + L L F D Sbjct: 113 LLEADVSLPVVRRFIKSVEEKSIGVKVTKGVSASQQLTKV---VADELCELMGGFGGDKL 169 Query: 107 -FSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 F P VIL+ G+ GVGKTT GKL+ + G + +L A D +R AAIDQLK Sbjct: 170 IFRKEGEGPTVILMAGLQGVGKTTACGKLALFLKAQGKQSLLVATDVYRPAAIDQLKKLG 229 Query: 163 DRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 ++ D E+G+D + +A ++A+ + DV+I+DTAGRL + +LMA + + Sbjct: 230 EQI--DVPVFELGTDFSPPDIARSGVEKAKLENFDVVIVDTAGRLQVDEMLMAEL-LATK 286 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 R D L V+DA TGQ A F+ G TG ++TKMDG RGG + + Sbjct: 287 AATRAD-----ETLLVVDAMTGQEAASLTAAFNDAVGITGAVLTKMDGDTRGGAALSVRE 341 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE ++ LEPF + + I G D Sbjct: 342 VSGKPIKFIGSGEKLDALEPFFPERMTTRILGMGD 376 >gi|218782478|ref|YP_002433796.1| signal recognition particle protein [Desulfatibacillum alkenivorans AK-01] gi|218763862|gb|ACL06328.1| signal recognition particle protein [Desulfatibacillum alkenivorans AK-01] Length = 442 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 89/285 (31%), Positives = 142/285 (49%), Gaps = 13/285 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 +S + + DG++E + L+ +D+ V + ++ + + ++V Q+V+ V+E Sbjct: 22 LSEKNIQDGLKE-VRLALLEADVHYKVVKTLIAAIKERAVGQEVLESLTPGQQVVKIVNE 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + ++ ++ N H P I++VG+ G GKTT GKL+ + G K L D + Sbjct: 81 ELTNLMGGANEEINLGGGH-PASIMLVGLQGSGKTTTAGKLAVYLRGQGRKPYLVPADVY 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAI+QL S S+ S +A A + + D +I+DTAGRLH + Sbjct: 140 RPAAIEQLTKIGKELSIPVYPSDTDSKPEKIAELARIKCAQEGCDTMILDTAGRLHIDDE 199 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LMA +G+ +K P P +L V DA TGQ+A+ + F+ G+I+TKMDG A Sbjct: 200 LMAELGR----IKATTP--PSDILLVADAMTGQDAVNMAKAFNDAMDVGGVILTKMDGDA 253 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I P+ F+G GE N E F ++ I G D Sbjct: 254 RGGAALSIRSITGKPIKFIGTGEKSNAFEAFHPNRMASRILGMGD 298 >gi|297584012|ref|YP_003699792.1| signal recognition particle protein [Bacillus selenitireducens MLS10] gi|297142469|gb|ADH99226.1| signal recognition particle protein [Bacillus selenitireducens MLS10] Length = 449 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/271 (31%), Positives = 143/271 (52%), Gaps = 17/271 (6%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V +K V ++ + +DV Q+V+ V+E + +++ N Sbjct: 39 LLEADVNFKVVKKFVADVKERAVGQDVMESLTPGQQVIKVVNEELTRLMGGEQSKINT-A 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 S P V+++VG+ G GKTT GKL+ + + K +L A D +R AAI QL+ + Sbjct: 98 SKPPTVVMMVGLQGAGKTTTTGKLANYLRKNHNRKPLLVAADIYRPAAIKQLETLGKQL- 156 Query: 167 ADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 D +G + +A +A + A+ + D ++IDTAGRLH ++ LM + ++ +K Sbjct: 157 -DMPVFSLGDQVSPVEIARKAVEHAKEEHHDYVLIDTAGRLHIDNELMDELQQVKAEVK- 214 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P VL V+DA TGQ+A+ E F+ +G+++TK+DG RGG I + Sbjct: 215 -----PDEVLLVVDAMTGQDAVNVAESFNEQLELSGVVLTKLDGDTRGGAAISVKAVTDT 269 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F G+GE I+ LEPF + ++ I G D Sbjct: 270 PIKFAGMGEKIDQLEPFHPERMASRILGMGD 300 >gi|14601593|ref|NP_148133.1| signal recognition 54 kDa protein [Aeropyrum pernix K1] gi|12230645|sp|Q9YB62|SRP54_AERPE RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|5105423|dbj|BAA80736.1| signal recognition 54 kDa protein [Aeropyrum pernix K1] Length = 441 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 95/285 (33%), Positives = 142/285 (49%), Gaps = 25/285 (8%) Query: 43 DGVREELEDLLIRSDIGVA----VAQKIVEELLTKRYAKDVSVQ----RVLYDVSELIHK 94 D ++L+ LI++D+ V V ++I E L + V+ + +++Y+ EL+ K Sbjct: 24 DAFVKDLQRELIKADVNVKLVLNVTRRIKERALKEEPPPGVTRRDWMIKIVYE--ELV-K 80 Query: 95 MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 + +P D P ++L+VGV G GKTT GKL+ G KV L + DT R A Sbjct: 81 LFGGDQEP-QVDPPKTPWIVLLVGVQGSGKTTTAGKLAYYYVRRGYKVGLVSSDTHRPGA 139 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 +QLK A+ A F G D A +A + ++ +++I+DTAGR G Sbjct: 140 YEQLKRLAEEAGAMFYGEREG-DPAEIARRGLEDLLSRGAEIVIVDTAGR--------HG 190 Query: 215 IGKMIRVLKRLDPHA----PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 G+ R+L + A P V V+DA+ GQ A+ E FH +I+TKMDGTA Sbjct: 191 HGEEARLLDEMKAIASKVRPDEVALVIDASIGQKAMGLAERFHKSTPIGSIIVTKMDGTA 250 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGGG + + F+G GE + +LEPF + F A I G D Sbjct: 251 RGGGALTAAAVTGARIKFIGTGETLGELEPFAPRRFVARILGMGD 295 >gi|302670925|ref|YP_003830885.1| signal recognition particle protein Ffh [Butyrivibrio proteoclasticus B316] gi|302395398|gb|ADL34303.1| signal recognition particle protein Ffh [Butyrivibrio proteoclasticus B316] Length = 457 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/274 (29%), Positives = 141/274 (51%), Gaps = 11/274 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSK 101 +E++ L+ +D+ V ++ + + + +DV Q V+ V+E + ++ + Sbjct: 33 KEVKMALLEADVSFKVVKQFISAVQERAVGEDVLNGLNPGQMVIKIVNEEMISLMGSETT 92 Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 ++ V+++ G+ G GKTT K++ K+ G K +L A D +R AAIDQL+I Sbjct: 93 EIKLQPTNEITVLMMCGLQGAGKTTTAAKIAGKLKLKGRKPLLVACDIYRPAAIDQLQIN 152 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 A + DF +D +A + ++A+ K +V+IIDTAGRL + I+M + + Sbjct: 153 ASKQEVDFFTLGSHADPVDIAKASIEEARKKGNNVVIIDTAGRLQIDDIMMQELVDIKNA 212 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 + H L V+DA TGQ A+ F+ G G+I++KMDG +RGG + Sbjct: 213 V------GVHQTLLVVDAMTGQEAVNVASEFNEKVGVDGIILSKMDGDSRGGAALSTKAV 266 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ ++G+GE ++DLE F ++ I G D Sbjct: 267 TGKPILYVGMGEKLSDLEQFYPDRMASRILGMGD 300 >gi|192361389|ref|YP_001982164.1| signal recognition particle protein [Cellvibrio japonicus Ueda107] gi|190687554|gb|ACE85232.1| signal recognition particle protein [Cellvibrio japonicus Ueda107] Length = 457 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 91/305 (29%), Positives = 153/305 (50%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + RL +D +++ L D+ L+ +D+ + V + ++++ ++ Sbjct: 2 FENLTDRLSHTLRSLTGKARLSEDNIKDALRDVRKALLEADVALPVVKAFIDQVRSRALG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + +S Q+ L V + + ++ N P V+L+ G+ G GKTT + KL Sbjct: 62 QQISKALNPGQQFLKIVEAELVATMGQANESLNL-AQQPPAVVLMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 ++ + + KV++ + D +R AAI QL+ A DF S +A A A+ Sbjct: 121 ARFLKEREKKKVLVVSADVYRPAAIRQLETLAADIGVDFFPSSGEQKPLDIARNAHDHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + DVLI+DTAGRLH + LM I ++ LK P L V+DA GQ+A+ + Sbjct: 181 KQFFDVLIVDTAGRLHVDEELMVEIKELHASLK------PIETLFVIDAMIGQDAVNTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK DG ARGG + + P+ FLG+GE + LEPF ++ I Sbjct: 235 AFNDALPLTGVILTKADGDARGGAALSVRHITGKPIKFLGMGEKTDALEPFHPDRIASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|109947829|ref|YP_665057.1| signal recognition particle protein [Helicobacter acinonychis str. Sheeba] gi|109715050|emb|CAK00058.1| signal recognition particle protein [Helicobacter acinonychis str. Sheeba] Length = 448 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 87/297 (29%), Positives = 152/297 (51%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ A+++++++ T+ A + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKAARELLKKVETQTKASGIGR 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L L +L LS F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---DALEKSLLEILSAQGGSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVLI Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVQEIANNALKRAKEAQFDVLI 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + ++ +L PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMKELKEVKEIL------TPHEVLYVADALSGQDGVKSANTFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I +P+ F+G GE I DL+ FV + + G D Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291 >gi|115871973|ref|XP_780650.2| PREDICTED: similar to Signal recognition particle 54 [Strongylocentrotus purpuratus] gi|115951374|ref|XP_001185704.1| PREDICTED: similar to Signal recognition particle 54 [Strongylocentrotus purpuratus] Length = 510 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P++I+ VG+ G GKTT KL+ G KV L DTFR+ A DQLK A + F Sbjct: 100 KPNIIMFVGLQGSGKTTTCTKLAYYYQKKGWKVALICADTFRAGAFDQLKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A + ++ + + +++I+DT+GR L +L+ + + Sbjct: 160 YGSYTEVDPVIIAADGVEKFKKENFEIIIVDTSGRHKQEDSLFE------EMLQVANVTS 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K PV F+ Sbjct: 214 PDNIIFVMDASIGQACESQAKAFKEKVDVASVIITKLDGHAKGGGALSAVAATKSPVIFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D EPF K F + + G D Sbjct: 274 GTGEHIDDFEPFKTKPFISKLLGMGD 299 >gi|329297075|ref|ZP_08254411.1| signal recognition particle protein [Plautia stali symbiont] Length = 453 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 95/322 (29%), Positives = 160/322 (49%), Gaps = 33/322 (10%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D +++ L ++ L+ +D+ + V + + + Sbjct: 2 FDNLTDRLSQTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINRVKEAAVG 61 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 +DV+ R L E I + L + N + + P V+L+ G+ G GKTT +G Sbjct: 62 QDVN--RSLTPGQEFIKIVRNELVAAMGAENNALNLN-AQPPAVVLMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL K + + KV++ + D +R AAI QL+ A + DF S+ + A K+ Sbjct: 119 KLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVGVDFCPSDPSQKPVDIVNHALKE 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNA 245 A+ + DVL++DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 179 ARLQFYDVLLVDTAGRLHVDEAMMDEIKQV---------HAAINPVETLFVVDAMTGQDA 229 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + F+ TG+I+TK+DG ARGG + I P+ F+G+ E + LE F Sbjct: 230 ANTAKAFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFMGMSEKTDALEAFYPDR 289 Query: 306 FSAVITG------CLDYGEEKI 321 ++ I G ++Y E K+ Sbjct: 290 IASRILGMGDVLSLIEYIESKV 311 >gi|294634744|ref|ZP_06713274.1| signal recognition particle protein [Edwardsiella tarda ATCC 23685] gi|291091843|gb|EFE24404.1| signal recognition particle protein [Edwardsiella tarda ATCC 23685] Length = 453 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 97/309 (31%), Positives = 153/309 (49%), Gaps = 25/309 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + +I RL +D +++ L ++ L+ +D+ + V + + + K A Sbjct: 2 FENLSDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINRV--KESA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPF---NWDFS---HRPHVILVVGVNGVGKTTVIGK 130 V + L E + + L++ N + + P V+L+ G+ G GKTT +GK Sbjct: 60 LGQEVNKSLTPGQEFVKIVQDELTRAMGEANTELNLAAQPPAVVLMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + K V++ + D +R AAI QL+ A DF S++ + A A Sbjct: 120 LGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQGVGVDFFPSDVQERPLDIVQRALTHA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246 + K DVLI+DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 180 KQKFYDVLIVDTAGRLHVDEAMMEEIKQI---------HAAITPVETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ TG+++TK+DG ARGG + I P+ FLGVGE + LEPF Sbjct: 231 NTASAFNQALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRV 290 Query: 307 SAVITGCLD 315 ++ I G D Sbjct: 291 ASRILGMGD 299 >gi|118602610|ref|YP_903825.1| signal recognition particle subunit FFH/SRP54 (srp54) [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567549|gb|ABL02354.1| signal recognition particle subunit FFH/SRP54 (srp54) [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 464 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/192 (39%), Positives = 110/192 (57%), Gaps = 7/192 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++ G+ G GKTT I KL+ + KV++ + D +R AAI+QL++ A + +F Sbjct: 100 PAVIMLAGLQGAGKTTSIAKLALYLKQRENKKVLVVSADVYRPAAIEQLEVLAKQVEVNF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S I + + A K AQ + DVL++DTAGRLH + +M I+VL++ Sbjct: 160 FPSTIDDKPSDIVASAKKYAQKQFFDVLLVDTAGRLHIDEQMM----DEIKVLQK--KVN 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+D+ TGQ+A + F TG+I+TK+DG ARGG + + P+ FL Sbjct: 214 PIETLFVVDSMTGQDAAHTAKAFADALPLTGVILTKIDGDARGGAALSVRHITGKPIKFL 273 Query: 290 GVGEGINDLEPF 301 GVGE I+ LEPF Sbjct: 274 GVGEKIDTLEPF 285 >gi|255070283|ref|XP_002507223.1| type II secretory pathway family [Micromonas sp. RCC299] gi|226522498|gb|ACO68481.1| type II secretory pathway family [Micromonas sp. RCC299] Length = 568 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 91/273 (33%), Positives = 134/273 (49%), Gaps = 19/273 (6%) Query: 53 LIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF- 107 L+ +D+ + V ++ ++ + K R K V+ + L V + L L F D Sbjct: 121 LLEADVSLPVVRRFIKNIEQKAIGTRVTKGVNAGQQLTKV---VADELCELMGGFGGDSL 177 Query: 108 -----SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 S P VIL+ G+ GVGKTT GKL+ + G +L A D +R AAI+QLK Sbjct: 178 AFKDPSMGPTVILMAGLQGVGKTTACGKLALYLKKQGKDSLLVATDVYRPAAIEQLKRLG 237 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 ++ + D +A ++A+A+ +DV+IIDTAGRL + LM + +R Sbjct: 238 EQVKTPVFDMGVRVDPPEVARLGLEKARAEGIDVVIIDTAGRLQVDVHLM----EELRAT 293 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 K A +L V+DA TGQ A F G TG ++TKMDG RGG + + Sbjct: 294 K--IATAADEILLVVDAMTGQEAAALTAAFDEAVGITGAVLTKMDGDTRGGAALSVREVS 351 Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F GVGE + LEPF + ++ I G D Sbjct: 352 GKPIKFTGVGEKMEALEPFYPERMASRILGMGD 384 >gi|170088384|ref|XP_001875415.1| predicted protein [Laccaria bicolor S238N-H82] gi|164650615|gb|EDR14856.1| predicted protein [Laccaria bicolor S238N-H82] Length = 543 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 89/290 (30%), Positives = 143/290 (49%), Gaps = 30/290 (10%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTK------RYAKDVS--------VQRVLYDV 88 D +E+ L+ SD+ V + +++ K A D S +Q+ ++D Sbjct: 29 DATLKEITAALLESDVNVKFVASLRQKVKAKVKATIESAAADKSKETNRKNLIQKAVFD- 87 Query: 89 SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 EL+ ++ P +P+ +P+VI+ VG+ G GKTT KL+ G K + D Sbjct: 88 -ELVA-LVDPGVEPYKPK-KGQPNVIMAVGLQGNGKTTTCTKLAVHYQKRGFKSAIVCAD 144 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+ A DQ + A + + S +D ++A + + + ++ DV+I+DT+GR Sbjct: 145 TFRAGAFDQTRQSATKAKVAYFGSYTETDPVSIAAQGVAKFKKERFDVIIVDTSGRHKQE 204 Query: 209 SIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 S L M IG+ ++ P + +LDA+ GQ A Q F A +I+TK Sbjct: 205 SELFEEMVQIGEAVK---------PDMTVLILDASIGQAAEAQSRAFKESANFGAIIVTK 255 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 MDG A+GGG I V K P+ FLGVGE ++DL+ F + F + + G D Sbjct: 256 MDGHAKGGGAISAVAATKTPIIFLGVGEHLHDLDRFSPQPFISKLLGLGD 305 >gi|312885342|ref|ZP_07745004.1| signal recognition particle subunit FFH/SRP54 (srp54) [Mucilaginibacter paludis DSM 18603] gi|311302178|gb|EFQ79185.1| signal recognition particle subunit FFH/SRP54 (srp54) [Mucilaginibacter paludis DSM 18603] Length = 442 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/212 (34%), Positives = 115/212 (54%), Gaps = 7/212 (3%) Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 +F P +IL+ G+NG GKTT GKL+ + + G K +L AGD +R AAI+QLK+ + Sbjct: 93 LNFPATPTIILIAGLNGAGKTTFTGKLANFLKTQKGKKPLLVAGDVYRPAAIEQLKVLGE 152 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + + D A+A E A+ +V+I+DTAGRL + +M I ++ L Sbjct: 153 QIGVPVYANLESKDPIAIAREGVALAKQNGNNVVIVDTAGRLSIDEAMMVEIEQVKAALN 212 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 PH +L V+D+ TGQ+A+ ++F+ TG+++TK+DG RGG + I Sbjct: 213 ------PHEILFVVDSMTGQDAVNTAKVFNDRLDFTGVVLTKLDGDTRGGAALSIKSVVN 266 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + L+ F ++ I G D Sbjct: 267 KPIKFIGTGEKMEALDVFHPDRMASRILGMGD 298 >gi|260775500|ref|ZP_05884397.1| signal recognition particle subunit Ffh SRP54 [Vibrio coralliilyticus ATCC BAA-450] gi|260608681|gb|EEX34846.1| signal recognition particle subunit Ffh SRP54 [Vibrio coralliilyticus ATCC BAA-450] Length = 463 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 98/307 (31%), Positives = 153/307 (49%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D +++ L ++ L+ +D+ + V + V+ + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVKRV--KEGA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E I + L ++ N + P VIL+ G+ G GKTT +G Sbjct: 60 VGVEVSKSLTPGQEFIKIVQSELEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KLSK + + K V++ + D +R AAI QL+ A DF S +A A Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSPDQKPIDIANAAIDH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DVL++DTAGRL + +M I ++ + P L V+DA TGQ+A Sbjct: 179 AKKKFYDVLLVDTAGRLAIDEQMMGEIQELHSAID------PVETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+I+TK+DG ARGG + + P+ FLGVGE + LEPF ++ Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|184155710|ref|YP_001844050.1| signal recognition particle protein [Lactobacillus fermentum IFO 3956] gi|183227054|dbj|BAG27570.1| signal recognition particle protein [Lactobacillus fermentum IFO 3956] Length = 484 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/282 (31%), Positives = 147/282 (52%), Gaps = 20/282 (7%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML 96 +RE + ++ L+ +D+ V + V+ + K +V Q+++ V++ + +M+ Sbjct: 36 LRETMREIRLALLEADVNFKVVKDFVKTVREKAAGAEVLKGLNPAQQIVKIVNDELTEMM 95 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAI 155 + P N +H P VI++VG+ G GKTT GKL+K + + + + A D +R AAI Sbjct: 96 GETATPLNKS-AHIPTVIMMVGLQGAGKTTTAGKLAKHLKKEENARPLFIAADVYRPAAI 154 Query: 156 DQLKIWADRTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 QL+ A S D E+G+D + + + A+ K D +IIDTAGRL + LM Sbjct: 155 TQLQQVA--ASIDVPVFEMGTDVDPVEIVRQGMEVAKEKHNDYVIIDTAGRLQIDEQLME 212 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + K+ + K P +L V+DA TGQNA+ + F TG+++TK+DG RGG Sbjct: 213 ELAKIKELAK------PDEILLVVDAMTGQNAVNTAQGFDDQLDITGVVLTKLDGDTRGG 266 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+G GE +++L+ F ++ I G D Sbjct: 267 AAMSIRAVTGKPIKFVGEGEKMDNLDVFHPDRMASRILGMGD 308 >gi|27573177|gb|AAO19988.1| regulatory protein PilA [Neisseria gonorrhoeae] Length = 296 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 67/196 (34%), Positives = 116/196 (59%), Gaps = 2/196 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G A + K+ + + + ++ + + EELE +LI D+G+ + +++++ Sbjct: 101 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 160 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 161 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 220 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W R + V S+ D+AA+ ++A + A Sbjct: 221 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVT-VISQTTGDSAAVCFDAVQAA 279 Query: 190 QAKKVDVLIIDTAGRL 205 +A+ +D+++ DTAGRL Sbjct: 280 KARGIDIVLADTAGRL 295 >gi|168001070|ref|XP_001753238.1| predicted protein [Physcomitrella patens subsp. patens] gi|162695524|gb|EDQ81867.1| predicted protein [Physcomitrella patens subsp. patens] Length = 617 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/281 (32%), Positives = 146/281 (51%), Gaps = 15/281 (5%) Query: 43 DGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELIHKMLM 97 D ++E ++D+ L+ +D+ + V ++ V+ + K V V+ V D + ++++ L+ Sbjct: 150 DNIKEPMKDIRRALLEADVSLPVVRRFVKSVSEKAIGMGV-VRGVRPDQQLVKVVNDELV 208 Query: 98 PL--SKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 L + +F+ P VIL+ G+ GVGKTT GKL+ G VM+ A D +R AA Sbjct: 209 GLMGGEMVGIEFAKSGPTVILMAGLQGVGKTTACGKLALFCKKKGKSVMMVATDVYRPAA 268 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 IDQL + + A +A + + + +DV+I+DTAGRL + +M Sbjct: 269 IDQLVTLGKQVEVPVFEAGNQLRPAEIAKRGLAEGKKQGIDVIIVDTAGRLQVDRGMMDE 328 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + ++ +V+ P VL V+DA TGQ A V F+ G TG I+TK+DG +RGG Sbjct: 329 LKQIKQVVN------PTEVLLVVDAMTGQEAAGLVASFNLEIGITGAILTKLDGDSRGGA 382 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ F+G GEG+ LEPF ++ I G D Sbjct: 383 ALSVKEVSNKPIKFVGEGEGMTALEPFYPDRMASRILGMGD 423 >gi|148652404|ref|YP_001279497.1| signal recognition particle protein [Psychrobacter sp. PRwf-1] gi|148571488|gb|ABQ93547.1| signal recognition particle subunit FFH/SRP54 (srp54) [Psychrobacter sp. PRwf-1] Length = 515 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 94/312 (30%), Positives = 160/312 (51%), Gaps = 31/312 (9%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + I S +L +D +++ L ++ L+ +D+ + + + V+ + + Sbjct: 2 FDTLTERLSGSLRKISGSGQLTEDNIKDTLREVRMALLEADVALPITRDFVKRVKEQALG 61 Query: 77 KDV--------SVQRVLYD-VSELI---HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 ++V + +++YD ++E++ ++ L KP P V L+ G+ G GK Sbjct: 62 QEVLKELAPGQAFVKIVYDELTEMMGSANQQLEMTGKP--------PVVYLLAGLQGAGK 113 Query: 125 TTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 TT GKL+K + + KVML + D +R AAI QL+ A + +A FV S + +A Sbjct: 114 TTTAGKLAKYLQERHKKKVMLVSADVYRPAAIKQLEQVAAQVNAKFVNSSSDENPIDIAK 173 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 A ++A+ + D+LIIDTAGRLH + +M I + P L V+D+ TGQ Sbjct: 174 RAIEEAKLQYQDILIIDTAGRLHIDEDMMDEIKALTAAAN------PSETLFVVDSMTGQ 227 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 +A + F+ TG+I+TK DG ARGG + + P+ FLG GE ++ LE F Sbjct: 228 DAANTAKAFNDALPLTGVILTKTDGDARGGAALSVRAITDKPIKFLGRGEKLDALEAFHP 287 Query: 304 KDFSAVITGCLD 315 + + I G D Sbjct: 288 ERIAQRILGMGD 299 >gi|54310152|ref|YP_131172.1| putative signal recognition particle protein [Photobacterium profundum SS9] gi|46914593|emb|CAG21370.1| putative signal recognition particle protein [Photobacterium profundum SS9] Length = 455 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/305 (29%), Positives = 151/305 (49%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + ++ RL DD +++ L ++ L+ +D+ + V ++ V+ + + Sbjct: 2 FENLTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVKRVKERAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q + V + ++ ++ + P VIL+ G+ G GKTT + KL Sbjct: 62 SEVSKSLTPGQEFIKIVQAELESVMGESNEALDL-ACQPPAVILMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + K V++ + D +R AAI QL+ A DF S + + A + Sbjct: 121 GKVLKEREKKNVLVVSADVYRPAAIKQLETLASDVGIDFFPSSVEQKPVDIVSAAVAHGK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DV+I+DTAGRLH + ++M I + + P L V+DA TGQ+A + Sbjct: 181 LKFYDVVIVDTAGRLHVDDVMMDEIKDIHKAAN------PVETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + + P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNDALPLTGVILTKVDGDARGGAALSVRYITGKPIKFLGVGEKTDALEPFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|157362996|ref|YP_001469763.1| signal recognition particle protein [Thermotoga lettingae TMO] gi|157313600|gb|ABV32699.1| signal recognition particle protein [Thermotoga lettingae TMO] Length = 433 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/288 (30%), Positives = 147/288 (51%), Gaps = 21/288 (7%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE--------ELLTKRYAKDVSVQRVLYD 87 ++ + +++ VR+ ++ L+ +D+ V ++ ++ E + K + D +++ D Sbjct: 22 LTEKNINEAVRQ-VKLSLLEADVNFKVVKEFIDSVKAKALGEEVLKSFTPDQQFVKIVRD 80 Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 ELI+ M + + H P VI++VG+ G GKTT KL+ + +G V+L A Sbjct: 81 --ELINIMGKSAA---TLNLRHHPSVIMLVGLQGSGKTTTAAKLANYLRKSGRTVLLVAA 135 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DT+R AAIDQL+ + + + + +A + ++ + + LI DTAGRLH Sbjct: 136 DTYRPAAIDQLEKLGKSIQIPVLTGD-RKNPLIIVQQALEYSKNSQYNTLIFDTAGRLHI 194 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + +M + + +K+L P +L V+DA GQ+A+ F TG I+TKMD Sbjct: 195 DEEMMEELQQ----IKQLS--NPDEILMVVDAMIGQDAVNSALEFDKRLNVTGFIVTKMD 248 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G ARGG ++ I PV F+GVGE I+ E F +A I G D Sbjct: 249 GDARGGVILSITHITGKPVKFIGVGEKIDAFEQFHPDRVAARILGMGD 296 >gi|317014538|gb|ADU81974.1| signal recognition particle protein [Helicobacter pylori Gambia94/24] Length = 448 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 87/297 (29%), Positives = 154/297 (51%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ VA+++++++ ++ A + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKASGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L L +L LS + F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVLI Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLI 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + ++ +L PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMQELKEVKGIL------TPHEVLYVADALSGQDGVKSANTFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I +P+ F+G GE I DL+ FV + + G D Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDMFVPERIVGRLMGAGD 291 >gi|238785845|ref|ZP_04629814.1| Signal recognition particle protein [Yersinia bercovieri ATCC 43970] gi|238713258|gb|EEQ05301.1| Signal recognition particle protein [Yersinia bercovieri ATCC 43970] Length = 453 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/209 (37%), Positives = 114/209 (54%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT + KL K + + K V++ + D +R AAI QL+ A + S Sbjct: 97 AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKHKKKVLVVSADVYRPAAIKQLETLAQQVS 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S++ + A +QA+ K DVLI+DTAGRLH + +M I ++ + Sbjct: 157 IDFFPSDVQEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQIHGAIN--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I P+ Sbjct: 214 ---PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 FLGVGE LEPF ++ I G D Sbjct: 271 KFLGVGEKTEALEPFHPDRVASRILGMGD 299 >gi|296109473|ref|YP_003616422.1| GTP-binding signal recognition particle SRP54 G- domain protein [Methanocaldococcus infernus ME] gi|295434287|gb|ADG13458.1| GTP-binding signal recognition particle SRP54 G- domain protein [Methanocaldococcus infernus ME] Length = 448 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 91/277 (32%), Positives = 148/277 (53%), Gaps = 22/277 (7%) Query: 39 RRLDDGVREELEDLLIRSDIGVAVAQKI--------VEELLTKRYAKDVSVQRVLYDVSE 90 ++L V ++++ LI++D+ V + KI +EE K ++K + +++Y+ E Sbjct: 24 KKLIKEVVKDIQRALIQADVNVKLVLKITKEIERRALEEEPPKGFSKKEHIIKIVYE--E 81 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 L+ K+L +KP + R +VI++VG+ G GKTT KL+K + G +V L A DT+ Sbjct: 82 LV-KLLGEEAKPLKIEPGRR-NVIMLVGIQGSGKTTTAAKLAKYLKKKGYRVGLIAADTY 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AA +QLK A++ + ++ + E + K VDV+IIDTAGR Sbjct: 140 RPAAYEQLKQLAEKIDVP-IYGDLSKKPEDIVKEGLNKF--KNVDVVIIDTAGRHKEEKG 196 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG-LIMTKMDGT 269 L+ + ++ + P ++ V+D T GQ A Q + F G G +I+TK+DG+ Sbjct: 197 LLEEMKRIKEI------SNPDEIMLVIDGTIGQQARVQAKAFKDAVGEIGSIIVTKLDGS 250 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 A+GGG + V K P+ F+G GE I+D E F K F Sbjct: 251 AKGGGALSAVAETKAPIKFIGTGEKIDDFEEFDPKKF 287 >gi|294495522|ref|YP_003542015.1| signal recognition particle subunit FFH/SRP54 (srp54) [Methanohalophilus mahii DSM 5219] gi|292666521|gb|ADE36370.1| signal recognition particle subunit FFH/SRP54 (srp54) [Methanohalophilus mahii DSM 5219] Length = 439 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 93/299 (31%), Positives = 148/299 (49%), Gaps = 20/299 (6%) Query: 25 SLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80 S L++ + ++ + R+D+ V ++++ L++SD+ V + ++ + + + +DV Sbjct: 7 SNSLQDALKKLVGAGRIDERTVNDVVKDIQRALLQSDVNVKMVMQLSKSIKERALDEDVP 66 Query: 81 V-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139 V ++++ LM + D +P I+++G+ G GKTT KL++ G Sbjct: 67 QGMNPREHVIRIVYEELMKIVGE-GTDIPLKPQKIMMIGLQGSGKTTTTAKLARYFQRKG 125 Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199 LK + DTFR A QLK + + F E DA + A+ K DV II Sbjct: 126 LKPAVVCADTFRPGAYQQLKTLCESLNVAFYGEEGNPDAVGIVERGL--AEIDKYDVKII 183 Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVA 256 DTAGR S L I +M R+ HA P L VLDA GQ A Q + F+ Sbjct: 184 DTAGRHSLESDL---IDEMERI------HAISSPDYKLLVLDAGIGQQASEQAKAFNDSV 234 Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G +G++++K+DGTA+GGG + V + F+GVGE DLE F A F + + G D Sbjct: 235 GISGVVISKLDGTAKGGGAMSAVAATDSSIAFIGVGETPQDLEKFEADRFISRLLGMGD 293 >gi|329121418|ref|ZP_08250043.1| signal recognition particle protein [Dialister micraerophilus DSM 19965] gi|327469708|gb|EGF15175.1| signal recognition particle protein [Dialister micraerophilus DSM 19965] Length = 452 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 94/294 (31%), Positives = 143/294 (48%), Gaps = 23/294 (7%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 KL K F K K +DI DG E+ L+ +D+ VA+ + ++ K Sbjct: 9 KLQKAFKDLRGKGKLSESDI-------DGALREVRKALLEADVNFKVAKDFIAQVREKAI 61 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++V Q V+ V + + ++L S I++VG+ G GKTT +GK Sbjct: 62 GEEVFGSLKPDQTVIKIVRDELTQLLGGTQSKITMS-SKGLTTIMLVGLQGAGKTTTVGK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + G +LAA D +R AAI QL++ A + E + A+A EA + A+ Sbjct: 121 LALMLKKKGKNPLLAACDVYRPAAIKQLQVLASQVGVSAFTIEGSKEPVAIAKEAVEYAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DV++IDTAGRL +++LM + K I+ PH +L VLD+ TGQ+A+ + Sbjct: 181 KHNNDVILIDTAGRLTIDTVLMEEL-KNIKA-----AVMPHEILLVLDSMTGQDAVTTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE----GINDLEP 300 F G G ++TKMDG ARGG + I P+ +GV E G+ D P Sbjct: 235 AFDESLGIDGTVLTKMDGDARGGAALSIKAVTGKPIKLIGVSEKLDGGLEDFYP 288 >gi|297619646|ref|YP_003707751.1| GTP-binding signal recognition particle SRP54 G- domain-containing protein [Methanococcus voltae A3] gi|297378623|gb|ADI36778.1| GTP-binding signal recognition particle SRP54 G- domain protein [Methanococcus voltae A3] Length = 450 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 90/288 (31%), Positives = 147/288 (51%), Gaps = 24/288 (8%) Query: 39 RRLDDGVREELEDLLIRSDIGVA--------VAQKIVEELLTKRYAKDVSVQRVLYDVSE 90 ++L V ++++ LI+SD+ V + +K +EE K K + +++Y+ E Sbjct: 24 KKLIKEVIKDIQKALIQSDVNVKLVLKMSKDIEKKAIEENPPKGLTKKEHIIQIVYN--E 81 Query: 91 LIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 L+ + ++P D + +IL+VG+ G GKTT KL++ + GLK L A D Sbjct: 82 LVQ---LIGNEPQKLDLDPSKKSIILLVGIQGSGKTTSSAKLARLIQKRGLKPALIAADV 138 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAA-ALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 +R AA QL+ A++ + E + +A + + KK DV IIDTAGR Sbjct: 139 YRPAAYKQLQQLAEKINVPLYGDETRTKTPIEIAKDGLNKL--KKADVFIIDTAGRHKEE 196 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTTGLIMTKMD 267 S L+ + ++ D P ++ V+D T GQ A Q + F AV +++TK+D Sbjct: 197 SGLLTEMKEL------KDELNPKEIVLVIDGTLGQQAKNQAKAFKDAVEDIGSILVTKLD 250 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G+A+GGG + V P+ F+G GEG++DLE F K F + + G D Sbjct: 251 GSAKGGGALSAVAEINAPIKFIGTGEGVDDLETFEPKKFISRLLGMGD 298 >gi|294670244|ref|ZP_06735137.1| signal recognition particle protein [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307981|gb|EFE49224.1| signal recognition particle protein [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 455 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/210 (35%), Positives = 114/210 (54%), Gaps = 14/210 (6%) Query: 111 PHVILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P V+L+ G+ G GKTT +GKL+K K D K+++ + D +R AAI+QL++ A++ D Sbjct: 100 PAVVLMAGLQGAGKTTTVGKLAKLLKTVDKKKKILVVSADVYRPAAIEQLRLLAEQVQVD 159 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 F S+ +A A A+ DVL++DTAGRL + +M I + H Sbjct: 160 FFPSDTTQKPVDIALAALNHAKRGFYDVLMVDTAGRLAIDQEMMDEIKAL---------H 210 Query: 229 A---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 A P L V+DA GQ+A+ + F+ TG+++TKMDG +RGG + + P Sbjct: 211 AAVNPVETLFVVDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGDSRGGAALSVRQVTGKP 270 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F+GVGE I+ LE F ++ I G D Sbjct: 271 IKFIGVGEKIDGLEAFHPDRIASRILGMGD 300 >gi|223993863|ref|XP_002286615.1| SRP54, signal recognition particle 54 kDa protein 2-like protein [Thalassiosira pseudonana CCMP1335] gi|220977930|gb|EED96256.1| SRP54, signal recognition particle 54 kDa protein 2-like protein [Thalassiosira pseudonana CCMP1335] Length = 451 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 96/307 (31%), Positives = 145/307 (47%), Gaps = 28/307 (9%) Query: 27 KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA-------QKIVEELLTKRYAKDV 79 KL+ D I++ L+ G+ E+ LI SD+ V + QK V L++ A Sbjct: 16 KLQSPSGDAITAETLN-GILSEISRALIESDVNVKLVMTLRSNIQKKVGALVSSDNANSA 74 Query: 80 S--------VQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVI 128 + VQR + D EL ML P + + +P++IL VG+ G GKTT I Sbjct: 75 ANNANIARLVQRAVVD--ELT-SMLTPNGENATKAYVMKRGKPNIILFVGLQGAGKTTSI 131 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 K + G K + DTFR+ A DQLK A + F S +D +A E ++ Sbjct: 132 AKYAHYYQRKGWKTAMVCADTFRAGAFDQLKQNATKLRIPFYGSYTEADPVLIAEEGVER 191 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 + +++I+DT+GR L + ++ ++ P + + V+DAT GQ Q Sbjct: 192 FISDGYEIIIVDTSGRHRQEETLFEEMQEISAAVR------PDNTIFVMDATQGQAVYDQ 245 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 FH +I+TK+DG A+GGG + V P+ FLG GE DL+PF AK F + Sbjct: 246 ALAFHGAVNVGSVIVTKLDGHAKGGGALSAVSATGSPIVFLGSGERFEDLDPFNAKSFVS 305 Query: 309 VITGCLD 315 + G D Sbjct: 306 KLLGFGD 312 >gi|312381041|gb|EFR26883.1| hypothetical protein AND_06742 [Anopheles darlingi] Length = 560 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 93/307 (30%), Positives = 150/307 (48%), Gaps = 21/307 (6%) Query: 15 RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT-- 72 RK+T S S II+ LD ++E + L+ +D+ + + +K+ E + + Sbjct: 8 RKITNALHSLSK------ATIINEEVLDSMLKE-ICTALLEADVNIRLVKKLRENVRSVI 60 Query: 73 --KRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 A ++ +R++ EL+ K++ P KP+ RP+VI+ VG+ G GKTT Sbjct: 61 DFDEMAGGLNKRRMIQSAVFKELV-KLVDPGVKPYQ-PIKGRPNVIMFVGLQGSGKTTTC 118 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+ K L DTFR+ A DQ+K A + F S D +A + + Sbjct: 119 TKLAYHYQKKNWKSCLVCADTFRAGAYDQIKQNATKARIPFYGSYTEVDPVVIAQDGVEM 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 + + + +I+DT+GR L +M+ V +DP +++ V+DAT GQ Q Sbjct: 179 FKKEGFEFIIVDTSGRHKQEESLFE---EMLAVANAVDPD---NIIFVMDATIGQACEAQ 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F +I+TK+DG A+GGG + V P+ F+G GE I+DLEPF K F + Sbjct: 233 AKAFKEKVDIGSVIITKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDLEPFKTKPFIS 292 Query: 309 VITGCLD 315 + G D Sbjct: 293 KLLGMGD 299 >gi|260435394|ref|ZP_05789364.1| signal recognition particle protein [Synechococcus sp. WH 8109] gi|260413268|gb|EEX06564.1| signal recognition particle protein [Synechococcus sp. WH 8109] Length = 486 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 86/285 (30%), Positives = 144/285 (50%), Gaps = 26/285 (9%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLM--- 97 DG +++ L+ +D+ + V ++ V E+ K +V V+ V D +++H+ L+ Sbjct: 28 DGALKDVRRALLEADVSLPVVKEFVAEVRDKAVGAEV-VRGVSPDQKFIQVVHEQLVEVM 86 Query: 98 -----PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 PL+K + P V+L+ G+ G GKTT KL + D G + ++ D +R Sbjct: 87 GGDNAPLAKA-----AEAPTVVLMAGLQGAGKTTATAKLGLHLKDQGRRALMVGADVYRP 141 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 AAI+QLK D +G++A +A +A+ + D L++DTAGRL ++ Sbjct: 142 AAIEQLKTLG--AQIDVEVFSLGAEAKPEDIAAAGLAKAKEEGFDTLLVDTAGRLQIDTE 199 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 +M +M+R+ + P VL V+D+ GQ A FH G TG ++TK+DG + Sbjct: 200 MME---EMVRIRTAVQPD---EVLLVVDSMIGQEAAELTRAFHDQVGITGAVLTKLDGDS 253 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I P+ F+G GE + L+PF + ++ I G D Sbjct: 254 RGGAALSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRILGMGD 298 >gi|325111176|ref|YP_004272244.1| signal recognition particle subunit FFH/SRP54 (srp54) [Planctomyces brasiliensis DSM 5305] gi|324971444|gb|ADY62222.1| signal recognition particle subunit FFH/SRP54 (srp54) [Planctomyces brasiliensis DSM 5305] Length = 495 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 90/302 (29%), Positives = 153/302 (50%), Gaps = 10/302 (3%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 ++KG L+ G + + R V++ L + + DI + + + E+ L ++ Sbjct: 5 ISKGLGDALGNLQRGRINETNIRESMQTVKQSLLEADVSYDIVDSFVKTVTEQSLGEKVL 64 Query: 77 KDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 K + ++++ V++ + ++ P+ ++ S VI++ G+ G GKTT GKL++ + Sbjct: 65 KSLKPGEQIVGIVNQELINLMGPIDHSLHFKQSG-ISVIMMCGLQGSGKTTTCGKLARML 123 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQA-QAKK 193 G K ML A D R AAI+QLK + + G++ A+ K+A Q Sbjct: 124 QSEGRKPMLVAADLQRPAAIEQLKTVGAQVGVPVHAEDPKGTNPVAVCQNGLKKAKQQGD 183 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +D +I+DTAGRLH + LM + + R L+ P VL V DA TGQ+A+R + F+ Sbjct: 184 IDTVILDTAGRLHIDDELMKELASIDRKLQ------PDQVLLVTDAMTGQDAVRSAKAFN 237 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 G I+TK+DG RGG + + +P+ F+GVGE ++ LE F ++ I G Sbjct: 238 ESLELDGAILTKLDGDTRGGAALSVKQVTGVPIKFIGVGEQLDKLEAFHPDRMASRILGM 297 Query: 314 LD 315 D Sbjct: 298 GD 299 >gi|329929595|ref|ZP_08283302.1| signal recognition particle protein [Paenibacillus sp. HGF5] gi|328936240|gb|EGG32692.1| signal recognition particle protein [Paenibacillus sp. HGF5] Length = 460 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/267 (31%), Positives = 135/267 (50%), Gaps = 10/267 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 L+ +D+ V + V ++ K K+V + V+ D+ LM S+ + Sbjct: 39 LLEADVNFKVVKDFVSKVKEKAIGKEVMDSFTPGMVIIDIVNKELTELMGGSQAKLAKSN 98 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P VI++ G+ G GKTT GKL+K + + +L AGD +R AAI QL++ ++ + Sbjct: 99 KPPTVIMMAGLQGAGKTTTSGKLAKLLQKQNSRPLLVAGDIYRPAAIKQLEVLGNQINVP 158 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + +A + + A+ D +IIDTAGRLH + LM + ++ V+ Sbjct: 159 VFSLGDKTSPVEIAKQGLQHAKDNGHDYVIIDTAGRLHVDEELMEELKQIHSVVN----- 213 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P VL V+DA TGQ+A+ E F+ TG+++TK+DG RGG + + P+ F Sbjct: 214 -PDEVLLVVDAMTGQDAVNVAESFNQQLTLTGVVLTKLDGDTRGGAALSVKAVTGCPIKF 272 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +GE I+ LEPF + ++ I G D Sbjct: 273 AALGEKIDALEPFHPERMASRILGMGD 299 >gi|167630250|ref|YP_001680749.1| signal recognition particle protein [Heliobacterium modesticaldum Ice1] gi|167592990|gb|ABZ84738.1| signal recognition particle protein [Heliobacterium modesticaldum Ice1] Length = 454 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 6/205 (2%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P V+++VG+ G GKTT + KL + G + +L A D +R AA+ QL++ ++ Sbjct: 100 PTVVMLVGLQGAGKTTTVSKLGLFLRKQGRRPLLVACDVYRPAAVKQLQVLGNQLDLPVF 159 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 G +A A + A A D++++DTAGRLH N LM + K I+ R P Sbjct: 160 SMGTGVSPVDIAKGAVEHAVAHGRDMVLLDTAGRLHINEELMEEL-KSIKSAVR-----P 213 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 H +L V+DA TGQ+A+ E FH G G+I+TK+DG ARGG + + P+ F G Sbjct: 214 HEILLVVDAMTGQDAVNVAESFHGQLGLDGVILTKLDGDARGGAALSVKAVTGCPIKFAG 273 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 +GE + LE F ++ I G D Sbjct: 274 MGEKPDALEQFHPDRMASRILGMGD 298 >gi|294950295|ref|XP_002786558.1| signal recognition particle 54 kDa protein 2 [Perkinsus marinus ATCC 50983] gi|239900850|gb|EER18354.1| signal recognition particle 54 kDa protein 2 [Perkinsus marinus ATCC 50983] Length = 533 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 89/296 (30%), Positives = 147/296 (49%), Gaps = 20/296 (6%) Query: 29 KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---------VEELLTKRYAKDV 79 K G +I LD+ ++E + L+++D+ V ++ +EEL K Sbjct: 16 KLGKATVIDEAVLDECLKE-ISTALLQADVNVRYVAELRKNIKRTVDLEELAAPGSNKQR 74 Query: 80 SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139 +Q+ + V++L+ +ML P +P+ +P+VI+ VG+ G GKTT K + G Sbjct: 75 VIQKAV--VNQLV-EMLSPDKEPYKPK-KGQPNVIMFVGLQGSGKTTSCTKYAHYYQRKG 130 Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199 +V L DTFR+ A DQLK A + F S + SD +A E + K D++I+ Sbjct: 131 WRVALVCADTFRAGAFDQLKQNATKVKIPFYGSYVESDPVKIAKEGVDLFKMDKYDIIIV 190 Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 DT+GR + L +M +V K ++ P ++ V+D+ GQ Q + F Sbjct: 191 DTSGRHRQEAAL---FDEMTQVAKAVN---PDEIVFVMDSHIGQACFEQAKAFKDTVSVG 244 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +++TK+DG A+GGG + V P+ F+G GE ++ EPF A+ F + G D Sbjct: 245 SVVVTKLDGHAKGGGALSAVAATDSPIIFIGTGEHFDEFEPFDAQSFVQRLLGLGD 300 >gi|159040882|ref|YP_001540134.1| GTP-binding signal recognition particle [Caldivirga maquilingensis IC-167] gi|157919717|gb|ABW01144.1| GTP-binding signal recognition particle SRP54 G- domain [Caldivirga maquilingensis IC-167] Length = 449 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 94/287 (32%), Positives = 142/287 (49%), Gaps = 24/287 (8%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL--------YDVSE 90 ++ +R L DL LIR+D+ V K+V EL TK ++ + L Y V Sbjct: 23 EETLRSILRDLQRALIRADVDV----KLVYEL-TKSIEEEFKEAKELPPGLTAKDYLVYL 77 Query: 91 LIHKM--LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 L K+ L+ K + + +P+++++VG G GKTT GKL+ GLKV L D Sbjct: 78 LYRKLTDLLGGDKEPDVEVKTKPYILMLVGTEGSGKTTTAGKLANFYIKRGLKVGLIETD 137 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 T R A DQL+ A+R A F +A +A + + K D++IIDTAGR N Sbjct: 138 TIRPGAFDQLRQLAERVKAMFFGDPSLGNAVNIAKAGLSRMISSKADLIIIDTAGRHRNE 197 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 L++ + ++ +K P+ V+ V+DAT G+ Q E F + +TK+D Sbjct: 198 EELLSEVKEIYEAVK------PNEVMLVVDATNGKQVGAQAEAFSKYVPVNSIFITKLDS 251 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TA+GGG + V + F+G GE I D+E F + F A + G D Sbjct: 252 TAKGGGALVSAVKTGARIKFIGNGEDIEDIEVFNPRRFVARLMGMGD 298 >gi|114799508|ref|YP_758770.1| signal recognition particle protein [Hyphomonas neptunium ATCC 15444] gi|114739682|gb|ABI77807.1| signal recognition particle protein [Hyphomonas neptunium ATCC 15444] Length = 491 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 93/285 (32%), Positives = 148/285 (51%), Gaps = 17/285 (5%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIH 93 D V E L ++ L+ +D+ + V + VE++ + ++V SV Q+V+ V + + Sbjct: 24 DKDVSEALREIRVALLEADVALPVVKDFVEKVRERAVGEEVIRSVKPGQQVIKIVYDALV 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRS 152 ML + + P V+++ G+ G GKTT GK++K+++D G K V+LA+ D R Sbjct: 84 DMLGSDEEENHLRVDTPPAVVMMAGLQGSGKTTTTGKIAKRLADRGKKKVLLASLDVRRP 143 Query: 153 AAIDQLKIWADRTSADFVCSEI--GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 AA++QL I A + I G A +A A + A+ DVL +DTAGR + Sbjct: 144 AAMEQLAILAKQAGETVSSLPIIPGQLPADIARRALQAAKIGGYDVLFLDTAGRTSIDEQ 203 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 +M+ ++ + P VL V DA TGQ+A+ FH TGL++T+MDG Sbjct: 204 MMSEAAEIAAIAN------PSEVLLVADALTGQDAVETARRFHERLPLTGLVLTRMDGDG 257 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + + +P+ FLGVGE ++ L+ F AK + I G D Sbjct: 258 RGGAALSMRAVTGLPIKFLGVGEKLDGLDAFDAKRVAGRILGQGD 302 >gi|27573167|gb|AAO19983.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|27573175|gb|AAO19987.1| regulatory protein PilA [Neisseria gonorrhoeae] Length = 311 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 66/196 (33%), Positives = 115/196 (58%), Gaps = 2/196 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G A + K+ + + + ++ + + EELE +LI D+G+ + +++++ Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMDATEYLMKDV 175 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 176 RGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W R + + G D+AA+ ++A + A Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVISQTTG-DSAAVCFDAVQAA 294 Query: 190 QAKKVDVLIIDTAGRL 205 +A+ +D+++ DTAGRL Sbjct: 295 KARGIDIVLADTAGRL 310 >gi|15612144|ref|NP_223796.1| putative signal recognition particle protein [Helicobacter pylori J99] gi|11387213|sp|Q9ZK62|SRP54_HELPJ RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog gi|4155673|gb|AAD06659.1| putative SIGNAL RECOGNITION PARTICLE PROTEIN [Helicobacter pylori J99] Length = 448 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 87/297 (29%), Positives = 154/297 (51%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ VA+++++++ ++ A + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKAGGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L L +L LS + F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVLI Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFHEENKSVKEIANNALKRAKEAQFDVLI 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + ++ VL PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I +P+ F+G GE I DL+ F+ + + G D Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFMPERIVGRLMGAGD 291 >gi|297544730|ref|YP_003677032.1| signal recognition particle protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842505|gb|ADH61021.1| signal recognition particle protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 446 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 72/205 (35%), Positives = 109/205 (53%), Gaps = 6/205 (2%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VI++VG+ G GKTT GKL+ + G +L A D R AAI QL++ + Sbjct: 101 PAVIMMVGLQGSGKTTACGKLANLLKKQGKNPLLVACDVVRPAAIKQLQVVGANVNVPVF 160 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 ++ +A + A++ DV+IIDTAGRLH + LM + + R ++ P Sbjct: 161 TMGDKANPVDIAKASIDYARSHNSDVIIIDTAGRLHIDEELMEELVNIKRAVQ------P 214 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 +L V+DA TGQ+A+ F+ TG+I+TK+DG RGG + I + P+ ++G Sbjct: 215 DEILLVVDAMTGQDAVNVASSFNERLDITGVILTKLDGDTRGGAALSIKAVTQKPIKYVG 274 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 GE + DLEPF ++ I G D Sbjct: 275 TGEKLTDLEPFYPNRMASRILGMGD 299 >gi|89069747|ref|ZP_01157083.1| signal recognition particle protein [Oceanicola granulosus HTCC2516] gi|89044693|gb|EAR50804.1| signal recognition particle protein [Oceanicola granulosus HTCC2516] Length = 498 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 87/272 (31%), Positives = 140/272 (51%), Gaps = 18/272 (6%) Query: 53 LIRSDIGVAVAQKIVEEL--------LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104 L+ +D+ + VA++ ++ + +TK V ++++D ELI +L P Sbjct: 38 LLEADVSLPVAREFIKAVEKQATGAAVTKSVTPGQQVIKIVHD--ELIG-VLQGEGDPGK 94 Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWAD 163 + P IL+VG+ G GKTT KL+K++ D G +V++A+ D R AA++QL I Sbjct: 95 LKIDNPPAPILMVGLQGSGKTTTTAKLAKRLKDREGKRVLMASLDVNRPAAMEQLAILGQ 154 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + D + G D A+A A QA DV ++DTAGRLH + L+A + Sbjct: 155 QIGVDTLPIVKGEDPVAIARRAKTQASLGGYDVYMLDTAGRLHIDHELIAQAAAV----- 209 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 D P L V+D TGQ+A+ E F G +G+++T+MDG RGG + + Sbjct: 210 -RDVANPRETLLVVDGLTGQDAVNVAEEFDDKIGVSGVVLTRMDGDGRGGAALSMRAVTG 268 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G+GE ++ +E F A+ + I G D Sbjct: 269 KPIRFVGLGERMDAIEEFHAERIAGRILGMGD 300 >gi|167461706|ref|ZP_02326795.1| signal recognition particle [Paenibacillus larvae subsp. larvae BRL-230010] Length = 432 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 71/205 (34%), Positives = 110/205 (53%), Gaps = 6/205 (2%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P ++++VG+ G GKTT GKL+K ++ K +L A D +R AAI QL++ ++ Sbjct: 101 PSIVMMVGLQGAGKTTTTGKLAKLLTKQNHKPLLVACDIYRPAAIKQLQVLGEQLQVPVF 160 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + +A + A+ D +IIDTAGRLH + LM + K +R + P Sbjct: 161 SMGDQVNPVDIAKAGIQHAKDNHYDYVIIDTAGRLHIDESLMEEL-KQVR-----EAVEP 214 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 +L V+DA TGQ+A+ E FH TG+++TK+DG RGG I + P+ F Sbjct: 215 DEILLVVDAMTGQDAVNVAESFHKQMELTGVVLTKLDGDTRGGAAISVKAVTGCPIKFAA 274 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 +GE ++ LEPF + ++ I G D Sbjct: 275 MGEKMDALEPFHPERMASRILGMGD 299 >gi|270264054|ref|ZP_06192322.1| hypothetical protein SOD_f02720 [Serratia odorifera 4Rx13] gi|270042247|gb|EFA15343.1| hypothetical protein SOD_f02720 [Serratia odorifera 4Rx13] Length = 474 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/209 (37%), Positives = 115/209 (55%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT + KL K + + K V++ + D +R AAI QL+ A+ Sbjct: 118 AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKQKKKVLVVSADVYRPAAIRQLETLAEGVG 177 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S++ + A +QA+ K DVLI+DTAGRLH + +M I ++ +K Sbjct: 178 IDFFPSDVKEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK--- 234 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I P+ Sbjct: 235 ---PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPI 291 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 FLGVGE + LEPF ++ I G D Sbjct: 292 KFLGVGEKTDALEPFHPDRVASRILGMGD 320 >gi|126179907|ref|YP_001047872.1| signal recognition particle protein Srp54 [Methanoculleus marisnigri JR1] gi|125862701|gb|ABN57890.1| signal recognition particle subunit FFH/SRP54 (srp54) [Methanoculleus marisnigri JR1] Length = 443 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 99/300 (33%), Positives = 143/300 (47%), Gaps = 27/300 (9%) Query: 28 LKEGITDIISSRRLDDGVREEL-EDL---LIRSDIGVAV----AQKIVEELLTKRYAKDV 79 LK+ + + +D EEL DL L+ +D+ V + +Q I + L + K + Sbjct: 9 LKDAVKKLAGKTVIDRAAVEELVRDLQRALLSADVNVKLVMHLSQTIKQRALDEEPPKGM 68 Query: 80 SVQ----RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 V+ R++Y EL+ M P + + P IL+ G+ G GKTT KL++ Sbjct: 69 GVREHVLRIVY--QELVRMMGSP------GEVALEPQTILMAGLQGSGKTTTTAKLARYF 120 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 GL+V + DTFR A DQLK DR S DA + E + + K + Sbjct: 121 QRKGLRVGVICADTFRPGAYDQLKTLCDRISVPCFGDPKEPDALKIVREGLPKYR-KLYE 179 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 V+IIDT GR L+ I + + HA H L V+DA GQ A Q FH Sbjct: 180 VIIIDTQGRHALEENLIEEIVNINEI-----SHAEHRWL-VIDAALGQQASEQARRFHEA 233 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G G+++TKMDGTA+GGG + V + + F+G GE I+DLE F F + + G D Sbjct: 234 IGIDGVLVTKMDGTAKGGGALSAVAETQSGIVFIGSGETIDDLERFDPDGFISRLLGMGD 293 >gi|284175659|ref|ZP_06389628.1| Signal recognition particle protein subunit SRP54 (srp54) [Sulfolobus solfataricus 98/2] gi|261602558|gb|ACX92161.1| GTP-binding signal recognition particle SRP54 G- domain protein [Sulfolobus solfataricus 98/2] Length = 447 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 98/313 (31%), Positives = 152/313 (48%), Gaps = 26/313 (8%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---V 67 L IR + F + S ++ + + I ++L+ LI SD+ V + + + Sbjct: 2 LENIRDAVRKFLTGSTPYEKAVDEFI----------KDLQKSLISSDVNVKLVFSLTAKI 51 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPFNWDFSHRPHVILVVGVNGVGK 124 +E L K V ++R + +S +++ L L K N + + P +I++VGV G GK Sbjct: 52 KERLNKEKPPSV-LERKEWFIS-IVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGK 109 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT GKL+ G KV L A D +R AA DQL ++ + +A + Sbjct: 110 TTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKK 169 Query: 185 AFKQAQAKKVDVLIIDTAGR--LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 K+D++I+DTAGR + L+ + +M VLK P V+ V+DA+ G Sbjct: 170 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK------PDDVILVIDASIG 223 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 Q A FH + +I+TKMDGTA+GGG + VV + F+G GE I++LE F Sbjct: 224 QKAYDLASRFHQASPIGSIIITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFN 283 Query: 303 AKDFSAVITGCLD 315 AK F + I G D Sbjct: 284 AKRFVSRILGMGD 296 >gi|15679321|ref|NP_276438.1| signal recognition particle protein Srp54 [Methanothermobacter thermautotrophicus str. Delta H] gi|3334341|sp|O27376|SRP54_METTH RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|2622427|gb|AAB85799.1| signal recognition particle protein SRP54 [Methanothermobacter thermautotrophicus str. Delta H] Length = 442 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 90/282 (31%), Positives = 145/282 (51%), Gaps = 24/282 (8%) Query: 45 VREELEDL---LIRSDIGVAV----AQKIVEELLTKRYAKDVSVQR----VLYDVSELIH 93 VRE ++D+ LI+SD+ + + ++ I E L + K ++ + ++YD E++ Sbjct: 27 VREVIKDIQRALIQSDVNIKLVFNLSKSIEERALNEEPPKGITPKEHIISIVYD--EMV- 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 K+L S D +P+ IL +G+ G GKTT IGKL++ + G V + DT+R A Sbjct: 84 KLLGEKSHELVID--DKPYRILFLGLQGSGKTTTIGKLARYLRKKGFTVGVVCTDTWRPA 141 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A++QLK + + DA LA + + Q K DV+I DTAGR L+ Sbjct: 142 ALEQLKQYTEGQDVSIYGDPQNRDALDLAEKGLARFQKK--DVIIFDTAGRHKEEKDLLR 199 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + ++ +++ PH + V+D T GQ A Q F +I+TK+DG+A+GG Sbjct: 200 EMEELSAIVE------PHEAILVIDGTIGQQAREQALAFRKATDIGSIIVTKLDGSAKGG 253 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + V P+ F+G GE I+DLE F + F + + G D Sbjct: 254 GALSAVAEIGAPIKFIGTGERIDDLEVFDPERFISRLLGMGD 295 >gi|124515662|gb|EAY57171.1| Signal recognition particle protein [Leptospirillum rubarum] gi|206602282|gb|EDZ38764.1| Signal recognition particle protein [Leptospirillum sp. Group II '5-way CG'] Length = 444 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 91/292 (31%), Positives = 151/292 (51%), Gaps = 24/292 (8%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDV- 88 ++ ++D+ +RE + L+ +D+ + V + E+L T+ +V Q VL +V Sbjct: 21 LLGEAQVDETLRE-IRVALLEADVNLDVVKSFTEQLRTRLKGAEVKEGLTPPQTVLKEVF 79 Query: 89 SELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 E++H + + N S +P VI+++G+ G GKTT KL+ +G +V+L A Sbjct: 80 DEVVHLLG---DQKANLQLSSKPPTVIMLMGLQGSGKTTTAAKLAYHFRQSGRRVLLVAS 136 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD----VLIIDTAG 203 D R AA++QLK+ ++ + V + G + + F + + K ++ V+I+DTAG Sbjct: 137 DLARLAAVEQLKVLGEQINVPVVAPDEG---LSNPRDMFPKVRKKWIEGMHEVVILDTAG 193 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 RL + LM + + + K P L VLDA TGQ ++ + F G G+I Sbjct: 194 RLSIDQNLMKELSDLRELYK------PKEALLVLDAMTGQESVHVAKAFDETIGIDGVIF 247 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TK+DG ARGG ++ I P+ F+GVGE I+ LEPF ++ I G D Sbjct: 248 TKLDGDARGGAILSIRSVMGKPIKFVGVGEKIDKLEPFHPDRMASRIIGMGD 299 >gi|221640546|ref|YP_002526808.1| Signal recognition particle subunit FFH/SRP54 [Rhodobacter sphaeroides KD131] gi|221161327|gb|ACM02307.1| Signal recognition particle subunit FFH/SRP54 [Rhodobacter sphaeroides KD131] Length = 505 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/269 (30%), Positives = 142/269 (52%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA+ V+++ K + V+ Q+V+ V + + +L + Sbjct: 38 LLEADVSLPVARDFVKKVQEKATGQGVTKSVTPGQQVVKIVHDELVSVLRGEGEADALKI 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P IL+VG+ G GKTT KL+K++++ G +V++A+ DT R AA++QL+I + Sbjct: 98 DNPPATILMVGLQGSGKTTTTAKLAKRLAERQGKRVLMASLDTNRPAAMEQLQILGAQIG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G A +A A Q DV+++DTAGRLH + +LM + + +R D Sbjct: 158 VDTLPIVKGESAVQIAKRAKTQGAMGGYDVIMLDTAGRLHIDEVLMEEV-QAVR-----D 211 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+D TGQ+A+ F G +G+++T+MDG RGG + + P+ Sbjct: 212 LAQPRETLLVVDGLTGQDAVNVAAEFDGKVGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ LE F + + I G D Sbjct: 272 RFVGLGEKMDALETFEPERIAGRILGMGD 300 >gi|317484960|ref|ZP_07943844.1| signal recognition particle protein [Bilophila wadsworthia 3_1_6] gi|316923765|gb|EFV44967.1| signal recognition particle protein [Bilophila wadsworthia 3_1_6] Length = 512 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 97/313 (30%), Positives = 157/313 (50%), Gaps = 23/313 (7%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 ESLS +L+ F S S + + ++ + DG+RE + L+ +D+ V ++ VE Sbjct: 3 ESLSD--RLSSAFRSLSGRAQ------LTEENIRDGLRE-VRLALLEADVNFKVVKEFVE 53 Query: 69 ELLTKRYAKDVSVQRVLYDVSELI---HKMLMPLSKPFNWDFSHR---PHVILVVGVNGV 122 + + + V++ L +L+ H L+ L + + R P VI++VG+ G Sbjct: 54 RVRERVLGQ--KVEKSLTPTQQLVKAVHDELVTLLGGETTELNLRGAQPGVIMMVGLQGS 111 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT GKL+ + ++ L D +R AAIDQL+ A + S + Sbjct: 112 GKTTSAGKLANLLRKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIPCFASSADMKPVDIV 171 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 A + A+ K+ V+I+DTAGRLH ++ LM + + ++ P +L V DA TG Sbjct: 172 RAALEDAKEKQCTVVILDTAGRLHIDAPLMQELVDIKSAVQ------PQEILFVADAMTG 225 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 Q+A+ E F+ TG+++TKMDG ARGG + I V ++GVGE ++DLE F Sbjct: 226 QDAVTVAEAFNKDLALTGVVLTKMDGDARGGAALSIKSVTGASVKYVGVGEKLSDLEVFH 285 Query: 303 AKDFSAVITGCLD 315 + + I G D Sbjct: 286 PERVAGRILGMGD 298 >gi|119390316|pdb|2IY3|A Chain A, Structure Of The E. Coli Signal Recognition Particle Bound To A Translating Ribosome Length = 432 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 93/309 (30%), Positives = 144/309 (46%), Gaps = 28/309 (9%) Query: 21 FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S +L+E I + R+ + E+ L+ +D+ + VA+ VE + + Sbjct: 2 FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALG 61 Query: 77 KDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 K V + +L V E + + L +P+ K N F +VG+ G GKTT Sbjct: 62 KQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWF--------LVGLQGSGKTT 113 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL+ G + +L A DT R AA +QL++ ++ + G ++ Sbjct: 114 TAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 ++A+ + D++++DTAGRL + LM + ++ VL P VL VLDA TGQ AL Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEAL 227 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G TGL++TK+DG ARGG + P+YF GV E LEPF + Sbjct: 228 SVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERL 287 Query: 307 SAVITGCLD 315 + I G D Sbjct: 288 AGRILGMGD 296 >gi|218295520|ref|ZP_03496333.1| signal recognition particle protein [Thermus aquaticus Y51MC23] gi|3024639|sp|O07347|SRP54_THEAQ RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog gi|2149137|gb|AAB58502.1| Ffh [Thermus aquaticus] gi|218244152|gb|EED10678.1| signal recognition particle protein [Thermus aquaticus Y51MC23] Length = 430 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 93/309 (30%), Positives = 144/309 (46%), Gaps = 28/309 (9%) Query: 21 FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S +L+E I + R+ + E+ L+ +D+ + VA+ VE + + Sbjct: 2 FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALG 61 Query: 77 KDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 K V + +L V E + + L +P+ K N F +VG+ G GKTT Sbjct: 62 KQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWF--------LVGLQGSGKTT 113 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL+ G + +L A DT R AA +QL++ ++ + G ++ Sbjct: 114 TAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 ++A+ + D++++DTAGRL + LM + ++ VL P VL VLDA TGQ AL Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEAL 227 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G TGL++TK+DG ARGG + P+YF GV E LEPF + Sbjct: 228 SVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERL 287 Query: 307 SAVITGCLD 315 + I G D Sbjct: 288 AGRILGMGD 296 >gi|238756459|ref|ZP_04617766.1| Signal recognition particle protein [Yersinia ruckeri ATCC 29473] gi|238705308|gb|EEP97718.1| Signal recognition particle protein [Yersinia ruckeri ATCC 29473] Length = 453 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 114/212 (53%), Gaps = 13/212 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT + KL K + + K V++ + D +R AAI QL+ A + Sbjct: 97 AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKHKKKVLVVSADVYRPAAIKQLETLAQQVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S++ + A +QA+ K DVLI+DTAGRLH + +M I ++ Sbjct: 157 VDFFPSDVQEKPIDIVSRALQQAKLKFFDVLIVDTAGRLHVDEAMMDEIKQI-------- 208 Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 HA P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ FLGVGE LEPF ++ I G D Sbjct: 268 KPIKFLGVGEKTEALEPFHPDRIASRILGMGD 299 >gi|238759638|ref|ZP_04620799.1| Cell division protein ftsY [Yersinia aldovae ATCC 35236] gi|238702181|gb|EEP94737.1| Cell division protein ftsY [Yersinia aldovae ATCC 35236] Length = 120 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 57/111 (51%), Positives = 79/111 (71%) Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 +L+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TGQNA+ Q ++F+ Sbjct: 1 MLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKLFNEA 60 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF A DF Sbjct: 61 VGLTGITLTKLDGTAKGGVIFAIANQFGIPIRYIGVGEGIEDLRPFKADDF 111 >gi|315497247|ref|YP_004086051.1| signal recognition particle protein [Asticcacaulis excentricus CB 48] gi|315415259|gb|ADU11900.1| signal recognition particle protein [Asticcacaulis excentricus CB 48] Length = 520 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 92/291 (31%), Positives = 152/291 (52%), Gaps = 21/291 (7%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE--------ELLTKRYAKDVSVQRVLY 86 ++S + +D+ +RE + L+ +D+ + V ++ + E + K V +++Y Sbjct: 21 VLSEKDVDEALRE-VRVALLDADVALPVVRQFMTKARELAAGEAIIKAVKPADQVVKIVY 79 Query: 87 DVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVML 144 D LI ++ +P D + P VIL+ G+ G GKTT KL+ ++S KVM+ Sbjct: 80 D--GLID--MLGGEEPTPIDLAAVPPAVILMAGLQGSGKTTTSAKLALRLSKFERKKVMM 135 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 A+ DT R AA++QLK+ ++ D + G A + A + A+ + DVLI+DTAGR Sbjct: 136 ASLDTRRPAAMEQLKLLGEQVGVDVLPIIAGQSAVEITRRALQSAKLQGYDVLILDTAGR 195 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 + LMA ++ + K P V D+ TGQ+A+R E FHA TGLI+T Sbjct: 196 TTLDEALMAEAAEIASLSK------PVETFLVADSLTGQDAVRTAEAFHARLPLTGLILT 249 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ++DG RGG ++ + +P+ F G GE ++ L+ F A+ + I G D Sbjct: 250 RVDGDGRGGAMLSMRAVTGLPIKFTGSGEKVDALDVFDARRIAGRILGQGD 300 >gi|317493964|ref|ZP_07952381.1| signal recognition particle protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918291|gb|EFV39633.1| signal recognition particle protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 453 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 96/309 (31%), Positives = 153/309 (49%), Gaps = 25/309 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + +I RL ++ +++ L ++ L+ +D+ + V + + + K A Sbjct: 2 FENLSDRLSRSLRNISGRGRLTEENIKDTLREVRMALLEADVALPVVRDFINRV--KESA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPF---NWDFS---HRPHVILVVGVNGVGKTTVIGK 130 V + L E + + L+ N + + P V+L+ G+ G GKTT +GK Sbjct: 60 VGHEVNKSLTPGQEFVKIVKNELTNAMGEVNTELNLAAQPPAVVLMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + K V++ + D +R AAI QL+ A DF S++ + A + A Sbjct: 120 LGKFLKEKHKKKVLVVSADVYRPAAIKQLETLAQGVGIDFFPSDVKEKPIEIVSRALQHA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246 + K DVLI+DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 180 KQKFYDVLIVDTAGRLHVDEAMMDEIKQV---------HAAINPVETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF Sbjct: 231 NTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFYPDRV 290 Query: 307 SAVITGCLD 315 ++ I G D Sbjct: 291 ASRILGMGD 299 >gi|207092729|ref|ZP_03240516.1| signal recognition particle protein (ffh) [Helicobacter pylori HPKX_438_AG0C1] Length = 448 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 87/297 (29%), Positives = 153/297 (51%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ VA+++++++ ++ + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L L +L LS + F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVLI Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLI 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + ++ VL PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I +P+ F+G GE I DL+ FV + + G D Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291 >gi|254169193|ref|ZP_04876028.1| SRP54-type protein, GTPase domain [Aciduliprofundum boonei T469] gi|197621851|gb|EDY34431.1| SRP54-type protein, GTPase domain [Aciduliprofundum boonei T469] Length = 348 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 101/313 (32%), Positives = 158/313 (50%), Gaps = 33/313 (10%) Query: 9 ESL-SWIRKLTK-GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 ESL + IRK++K G+ SL +KE + DI + L+R+D+ V +A K+ Sbjct: 7 ESLRNTIRKISKAGYVDESL-IKEVVRDIQRA--------------LLRADVEVHLALKL 51 Query: 67 VEEL----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + + L ++ +S + L + + +++ L K + + +P +++VG+ G Sbjct: 52 SKNVERRALEEKPPSGMSHRDFLIKI--IYEELVAILGK--EKEVALKPQKLMLVGLYGQ 107 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT GKL++ GL V L A D R AA +QLK ++ + DA +A Sbjct: 108 GKTTTAGKLARYFHKKGLSVALIACDVHRPAAYEQLKQIGEQLNVPVFGIPGEKDARKIA 167 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 +A K+ K V I DT+GR L+ I + +++ P + VLDAT G Sbjct: 168 RDAVKKM--KDYQVQIFDTSGRHALEDDLIEEIKDLKEIIQ------PDEIFLVLDATIG 219 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 Q A +Q + FH G TG+I+TKMDG+A+GGG + V PV F+G GE + DLE F Sbjct: 220 QQAGKQAKAFHDAVGVTGVIITKMDGSAKGGGALSAVAATGAPVVFIGTGEHLEDLEHFN 279 Query: 303 AKDFSAVITGCLD 315 F + + G D Sbjct: 280 PTRFISRLLGMGD 292 >gi|308184893|ref|YP_003929026.1| signal recognition particle protein [Helicobacter pylori SJM180] gi|308060813|gb|ADO02709.1| signal recognition particle protein [Helicobacter pylori SJM180] Length = 448 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 155/297 (52%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ VA+++++++ ++ + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L + L +L LS + F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---NALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVL+ Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + ++ +L PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMQELKEVKEILN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I+ +P+ F+G GE I DL+ FV + + G D Sbjct: 235 SGVVLSKFDSDSKGGIALGIIYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291 >gi|322382560|ref|ZP_08056440.1| signal recognition particle-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153476|gb|EFX45881.1| signal recognition particle-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 455 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 71/205 (34%), Positives = 110/205 (53%), Gaps = 6/205 (2%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P ++++VG+ G GKTT GKL+K ++ K +L A D +R AAI QL++ ++ Sbjct: 101 PSIVMMVGLQGAGKTTTTGKLAKLLTKQNHKPLLVACDIYRPAAIKQLQVLGEQLQVPVF 160 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + +A + A+ D +IIDTAGRLH + LM + K +R + P Sbjct: 161 SMGDQVNPVDIAKAGIQHAKDNHYDYVIIDTAGRLHIDESLMEEL-KQVR-----EAVEP 214 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 +L V+DA TGQ+A+ E FH TG+++TK+DG RGG I + P+ F Sbjct: 215 DEILLVVDAMTGQDAVNVAESFHKQMELTGVVLTKLDGDTRGGAAISVKAVTGCPIKFAA 274 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 +GE ++ LEPF + ++ I G D Sbjct: 275 MGEKMDALEPFHPERMASRILGMGD 299 >gi|332559527|ref|ZP_08413849.1| signal recognition particle protein [Rhodobacter sphaeroides WS8N] gi|332277239|gb|EGJ22554.1| signal recognition particle protein [Rhodobacter sphaeroides WS8N] Length = 505 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/269 (30%), Positives = 142/269 (52%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA+ V+++ K + V+ Q+V+ V + + +L + Sbjct: 38 LLEADVSLPVARDFVKKVQEKATGQGVTKSVTPGQQVVKIVHDELVSVLRGEGEADALKI 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P IL+VG+ G GKTT KL+K++++ G +V++A+ DT R AA++QL+I + Sbjct: 98 DNPPATILMVGLQGSGKTTTTAKLAKRLAERQGKRVLMASLDTNRPAAMEQLQILGAQIG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G A +A A Q DV+++DTAGRLH + +LM + + +R D Sbjct: 158 VDTLPIVKGESAVQIAKRAKTQGSMGGYDVIMLDTAGRLHIDEVLMDEV-QAVR-----D 211 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+D TGQ+A+ F G +G+++T+MDG RGG + + P+ Sbjct: 212 LAQPRETLLVVDGLTGQDAVNVAAEFDGKVGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ LE F + + I G D Sbjct: 272 RFVGLGEKMDALETFEPERIAGRILGMGD 300 >gi|317012929|gb|ADU83537.1| signal recognition particle protein [Helicobacter pylori Lithuania75] Length = 448 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 87/297 (29%), Positives = 153/297 (51%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ VA+++++++ ++ + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L L +L LS + F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVLI Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLI 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + ++ VL PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I +P+ F+G GE I DL+ FV + + G D Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291 >gi|18655505|pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain gi|18655506|pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain gi|18655507|pdb|1JPN|B Chain B, Gmppnp Complex Of Srp Gtpase Ng Domain gi|48425476|pdb|1RY1|U Chain U, Structure Of The Signal Recognition Particle Interacting With The Elongation-Arrested Ribosome Length = 296 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 93/309 (30%), Positives = 144/309 (46%), Gaps = 28/309 (9%) Query: 21 FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S +L+E I + R+ + E+ L+ +D+ + VA+ VE + + Sbjct: 2 FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALG 61 Query: 77 KDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 K V + +L V E + + L +P+ K N F +VG+ G GKTT Sbjct: 62 KQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWF--------LVGLQGSGKTT 113 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL+ G + +L A DT R AA +QL++ ++ + G ++ Sbjct: 114 TAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 ++A+ + D++++DTAGRL + LM + ++ VL P VL VLDA TGQ AL Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEAL 227 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G TGL++TK+DG ARGG + P+YF GV E LEPF + Sbjct: 228 SVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERL 287 Query: 307 SAVITGCLD 315 + I G D Sbjct: 288 AGRILGMGD 296 >gi|313618322|gb|EFR90367.1| signal recognition particle-docking protein FtsY [Listeria innocua FSL S4-378] Length = 139 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 61/124 (49%), Positives = 85/124 (68%) Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+A+K D+L+ DTAGRL N LM + K+ RV+ R P+APH VL VLDATTG Sbjct: 3 FDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLLVLDATTG 62 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA Q + F TG+I+TK+DGTA+GG +I I IPV F+G+GE ++DL+ F Sbjct: 63 QNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIPVKFVGLGEQMDDLQAFD 122 Query: 303 AKDF 306 A ++ Sbjct: 123 ANEY 126 >gi|116515177|ref|YP_802806.1| hypothetical protein BCc_245 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257031|gb|ABJ90713.1| protein component of signal recognition particle (SRP) [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 448 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 77/215 (35%), Positives = 121/215 (56%), Gaps = 10/215 (4%) Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIW 161 FN+ F ++ ++ V+G GVGKTT KL+ ++ K +L + D +R AAI QLK Sbjct: 93 FNFLF-NQLNICTVIGQQGVGKTTSTAKLAYLLTKKYKKKVLVVSTDIYRPAAIVQLKRL 151 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 ++T A+F S + + A K+A+ KK DVL+IDTAGRLHNNS K I+ Sbjct: 152 IEKTKANFFPSVVTQKIMTIIKSAIKEAKRKKYDVLLIDTAGRLHNNS-------KKIQE 204 Query: 222 LKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 LK++ + P+ L ++D+ GQ+++ + F+ +G+I+TK+D RGG + I Sbjct: 205 LKKIQEYTQPNETLLIIDSMIGQDSINLINKFNKEFNLSGIILTKLDSDTRGGVALSIRT 264 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 K P+ ++G GE I DL+ F + + I G D Sbjct: 265 LTKKPIKYIGTGEKIYDLQIFHPERIAKRILGMGD 299 >gi|114763706|ref|ZP_01443100.1| signal recognition particle protein [Pelagibaca bermudensis HTCC2601] gi|114543707|gb|EAU46720.1| signal recognition particle protein [Roseovarius sp. HTCC2601] Length = 502 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 92/286 (32%), Positives = 148/286 (51%), Gaps = 21/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEEL--------LTKRYAKDVSVQRVLYDVSE 90 +D VR L ++ L+ +D+ + VA++ ++ + +TK V ++++D E Sbjct: 24 EDDVRTALREVRVALLEADVSLPVARQFIKAVEKKATGAAVTKSVTPGQQVVKIVHD--E 81 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDT 149 LI +L +P + P IL+VG+ G GKTT KL++++ + G KV++A+ D Sbjct: 82 LIA-VLAGEGEPGSLRVDSPPAPILMVGLQGGGKTTTTAKLARRLKERDGKKVLMASLDV 140 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 R AA++QL I + D + G D A+A A QA DV ++DTAGRL + Sbjct: 141 NRPAAMEQLAILGTQIGVDTLPIVKGEDPVAIAKRAKTQAGLGGYDVYMLDTAGRLSIDE 200 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 LMA + + +R D P L V+D TGQ+A+ E F G TG+++T+MDG Sbjct: 201 ELMAQV-EAVR-----DVANPRETLLVVDGLTGQDAVHTAENFDTRIGITGVVLTRMDGD 254 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + + P+ F+G+GE ++ LE F + I G D Sbjct: 255 GRGGAALSMRAVTGKPIKFVGLGEKMDALETFEPDRVAGRILGMGD 300 >gi|256831064|ref|YP_003159792.1| signal recognition particle protein [Desulfomicrobium baculatum DSM 4028] gi|256580240|gb|ACU91376.1| signal recognition particle protein [Desulfomicrobium baculatum DSM 4028] Length = 492 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 97/308 (31%), Positives = 150/308 (48%), Gaps = 24/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRLD-----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F S S +L+ + RLD DG+RE + L+ +D+ V + VE++ + Sbjct: 2 FDSLSDRLESVFKKLRGHGRLDESNIQDGLRE-VRLALLEADVNFKVVKDFVEKVKARAL 60 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +DV Q+V+ V E + ++L + N P+VI++ G+ G GKTT K Sbjct: 61 GQDVLGSLTPGQQVIKIVHEELIELLGGENCALNLS-GKPPYVIMMSGLQGSGKTTSAAK 119 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + L D +R AAIDQL S + + + +A + A+ Sbjct: 120 LALFLRRQKYAPYLVPADVYRPAAIDQLTKLGAELGVPVYPSTVDMNPVDICVDAMRDAE 179 Query: 191 AKKVDVLIIDTAGRLHNNSILM---AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 K V++IDTAGRLH + +LM GI + R P +L V DA TGQ+A+ Sbjct: 180 LKGCSVILIDTAGRLHIDELLMQELVGIKEKCR---------PQEILFVADAMTGQDAVT 230 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 E F+ V TG+++TKMDG ARGG + I P+ F+G+GE +++LE F + Sbjct: 231 VAEKFNEVLDITGVVLTKMDGDARGGAALSIKSITGKPLKFVGMGERLSELEVFHPDRIA 290 Query: 308 AVITGCLD 315 + I G D Sbjct: 291 SRILGMGD 298 >gi|40889162|pdb|1O87|A Chain A, A New Mggdp Complex Of The Ffh Ng Domain gi|40889163|pdb|1O87|B Chain B, A New Mggdp Complex Of The Ffh Ng Domain gi|157881432|pdb|2C04|A Chain A, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High Resolution gi|157881433|pdb|2C04|B Chain B, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High Resolution gi|157883947|pdb|2J45|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a Resolution gi|157883948|pdb|2J45|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a Resolution gi|157883949|pdb|2J46|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a Resolution gi|157883950|pdb|2J46|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a Resolution Length = 297 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 93/309 (30%), Positives = 144/309 (46%), Gaps = 28/309 (9%) Query: 21 FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S +L+E I + R+ + E+ L+ +D+ + VA+ VE + + Sbjct: 2 FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALG 61 Query: 77 KDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 K V + +L V E + + L +P+ K N F +VG+ G GKTT Sbjct: 62 KQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWF--------LVGLQGSGKTT 113 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL+ G + +L A DT R AA +QL++ ++ + G ++ Sbjct: 114 TAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 ++A+ + D++++DTAGRL + LM + ++ VL P VL VLDA TGQ AL Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEAL 227 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G TGL++TK+DG ARGG + P+YF GV E LEPF + Sbjct: 228 SVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERL 287 Query: 307 SAVITGCLD 315 + I G D Sbjct: 288 AGRILGMGD 296 >gi|325283006|ref|YP_004255547.1| signal recognition particle protein [Deinococcus proteolyticus MRP] gi|324314815|gb|ADY25930.1| signal recognition particle protein [Deinococcus proteolyticus MRP] Length = 459 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/204 (36%), Positives = 104/204 (50%), Gaps = 6/204 (2%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 +V +VG+ G GKTT GKL++ G +++L A DT R AA DQL++ A + + Sbjct: 103 NVWFMVGLQGAGKTTSTGKLAQLYKKQGKRILLVAADTQRPAARDQLEVLARQVGVPVLK 162 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 E G A Q K D++I+DTAGRL ++ LM + + + L+ P Sbjct: 163 VEDGESPATTKARMEAQLAEKPADLVIVDTAGRLQVDAALMNELAALKQELQ------PT 216 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 + V+DA TGQ AL + F TGLIMTK+DG ARGG + P+YF GV Sbjct: 217 ETMLVVDAMTGQEALNVAQNFDERVAVTGLIMTKLDGDARGGAALSARSVTGRPIYFAGV 276 Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315 E + LEPF + I G D Sbjct: 277 SEKLTGLEPFYPDRIAGRILGMGD 300 >gi|297587488|ref|ZP_06946132.1| signal recognition particle protein [Finegoldia magna ATCC 53516] gi|297574177|gb|EFH92897.1| signal recognition particle protein [Finegoldia magna ATCC 53516] Length = 449 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 97/307 (31%), Positives = 162/307 (52%), Gaps = 23/307 (7%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F + S KL+ ++ + + +L D E++ L+ +D+ V + + ++ K A Sbjct: 6 FENLSDKLQNALSKLTNRGKLTEKDIDVAMREVKLALLEADVNYKVVKDFISQV--KERA 63 Query: 77 KDVSV-------QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 D SV Q+V+ V+E + KM+ + N +P VI++ G+ G GKTT G Sbjct: 64 IDSSVLESLTPGQQVIKIVNEELTKMMGEKEEKLNVS-PMKPTVIMLCGLQGAGKTTHAG 122 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALAYEAFKQ 188 KL+ + + V+L A D +R AAI QL++ + + E+G ++ ++ +A ++ Sbjct: 123 KLALNLKNKNKSVLLVACDIYRPAAIKQLQVVGGKVGVEVF--EMGQTNPVEISKKAIEE 180 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K +D +IIDTAGRLH + LM + + + + P +L V+DA TGQ+A+ Sbjct: 181 AKKKNIDYVIIDTAGRLHIDDTLMDELKNIKQEVN------PSDILLVVDAMTGQDAVNV 234 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 F+ TG+I+TK+DG ARGG + I P+ F+GVGE + DLEPF ++ Sbjct: 235 AAKFNEDLDITGIILTKLDGDARGGAALSIRQVADKPIKFIGVGEKLGDLEPFHPDRMAS 294 Query: 309 VITGCLD 315 I G D Sbjct: 295 RILGMGD 301 >gi|291550677|emb|CBL26939.1| signal recognition particle protein [Ruminococcus torques L2-14] Length = 451 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 90/304 (29%), Positives = 155/304 (50%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ ++ S RL +D V+ L+++ L+ +D+ V + ++++ + Sbjct: 3 FDSLSEKLQNVFKNLRSKGRLTEDDVKAALKEVKMALLEADVNFKVVKGFIKDVQERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + K++ + VI++ G+ G GKTT KL Sbjct: 63 QDVMNGLNPGQMVIKIVNEELVKLMGSETTEIKLQPGSAITVIMMAGLQGAGKTTTTAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K G K +L A D +R AAI QL+I A++ + + A +A A + A Sbjct: 123 AGKFKLKGKKPLLVACDVYRPAAIKQLEINAEKQGVEMFSMGDKNKPADIAKAAVEHAAK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +++I+DTAGRLH + +MA + ++ ++ H + V+DA TGQ+A+ Sbjct: 183 NGNNIVILDTAGRLHVDEDMMAELQEIKEAVE------VHQTILVVDAMTGQDAVNVASS 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G G+I+TK+DG RGG + I P+ ++G+GE ++DLE F ++ I Sbjct: 237 FNDKIGIDGVIVTKLDGDTRGGAALSIKAVTGKPILYVGMGEKLSDLEQFYPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|15897850|ref|NP_342455.1| Signal recognition particle protein subunit SRP54 (srp54) [Sulfolobus solfataricus P2] gi|21362961|sp|Q97ZE7|SRP54_SULSO RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|13814155|gb|AAK41245.1| Signal recognition particle protein subunit SRP54 (srp54) [Sulfolobus solfataricus P2] Length = 447 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 98/313 (31%), Positives = 152/313 (48%), Gaps = 26/313 (8%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---V 67 L IR + F + S ++ + + I ++L+ LI SD+ V + + + Sbjct: 2 LENIRDAVRKFLTGSTPYEKAVDEFI----------KDLQKSLISSDVNVKLVFSLTAKI 51 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPFNWDFSHRPHVILVVGVNGVGK 124 +E L K V ++R + +S +++ L L K N + + P +I++VGV G GK Sbjct: 52 KERLNKEKPPSV-LERKEWFIS-IVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGK 109 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT GKL+ G KV L A D +R AA DQL ++ + +A + Sbjct: 110 TTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKK 169 Query: 185 AFKQAQAKKVDVLIIDTAGR--LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 K+D++I+DTAGR + L+ + +M VLK P V+ V+DA+ G Sbjct: 170 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK------PDDVILVIDASIG 223 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 Q A FH + +I+TKMDGTA+GGG + VV + F+G GE I++LE F Sbjct: 224 QKAYDLASRFHQASPIGSVIITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFN 283 Query: 303 AKDFSAVITGCLD 315 AK F + I G D Sbjct: 284 AKRFVSRILGMGD 296 >gi|253990679|ref|YP_003042035.1| signal recognition particle protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782129|emb|CAQ85293.1| signal recognition particle protein (fifty-four homolog) [Photorhabdus asymbiotica] Length = 453 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 150/307 (48%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D ++E L ++ L+ +D+ + V + + K A Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFIS--CVKESA 59 Query: 77 KDVSVQRVLYDVSELIH-------KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V + L E + K + ++ N + P V+L+ G+ G GKTT + Sbjct: 60 VGHEVNKSLTPGQEFVKIVQNELVKAMGEVNSELNLS-TQTPAVVLMAGLQGAGKTTSVA 118 Query: 130 KLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL + KV++ + D +R AAI QL+ A DF S+ + +A + Sbjct: 119 KLGNFLKGRQKKKVLVVSADVYRPAAIKQLETLAQTVGIDFFPSDAQEKPVDIVMKAVQH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DVL++DTAGRLH + +M I ++ ++ P L V+DA TGQ+A Sbjct: 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHEIIN------PVETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F+ TG+++TK+DG ARGG + I P+ FLGVGE + LEPF ++ Sbjct: 233 AKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|145351050|ref|XP_001419900.1| IISP family transporter: Signal recognition particle 54 kDa protein (SRP54) [Ostreococcus lucimarinus CCE9901] gi|144580133|gb|ABO98193.1| IISP family transporter: Signal recognition particle 54 kDa protein (SRP54) [Ostreococcus lucimarinus CCE9901] Length = 513 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 72/204 (35%), Positives = 107/204 (52%), Gaps = 6/204 (2%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 +V++ VG+ G GKTT K + + G K L DTFR+ A DQLK A + F Sbjct: 115 NVVMFVGLQGAGKTTTCTKFAHYYAKKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYG 174 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 S SD A +A K+ + +K D++I+DT+GR L + ++ V + P Sbjct: 175 SYTESDPATIAAAGVKRFEEEKSDLIIVDTSGRHKQEEALFEEMREIASVTE------PT 228 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 + V+D++ GQ+A Q + F + G+IMTK+DG A+GGG I V K P+ F+G Sbjct: 229 MTIFVMDSSIGQSASDQAKAFASTVDVGGVIMTKLDGHAKGGGAISAVSETKAPILFIGT 288 Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315 GE I +LE F F + + G D Sbjct: 289 GEHIGELEAFETTSFVSKLLGMGD 312 >gi|291556910|emb|CBL34027.1| signal recognition particle subunit FFH/SRP54 (srp54) [Eubacterium siraeum V10Sc8a] Length = 455 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 89/277 (32%), Positives = 145/277 (52%), Gaps = 21/277 (7%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPL--S 100 E++ L+ +D+ V + V ++ + +V Q+V+ +++H L+ L + Sbjct: 34 EVKMALLEADVSFPVVKDFVAKVSERAVGSEVMNSLTPAQQVI----DIVHDELIQLMGT 89 Query: 101 KPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 DF S P VI++ G+ G GKTT KL+K + +L A D +R AAIDQLK Sbjct: 90 DTARIDFPSKPPCVIMMCGLQGAGKTTHTAKLAKYFKKQNRRPLLVACDIYRPAAIDQLK 149 Query: 160 IWADRTSADFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 + S D E+G ++ +A E+ K A+ DV+I+DTAGRLH + LM + + Sbjct: 150 VVG--ASVDAHVFEMGQTNPVKIAKESIKYAKDNGFDVVILDTAGRLHIDEDLMNELKDI 207 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 ++ P+ +L V+D+ TGQ+A+ + F+ + TG+I+TK+DG RGG + + Sbjct: 208 KAEVQ------PNEILLVVDSMTGQDAVNVAKSFNDMLDITGVILTKLDGDTRGGAALSV 261 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + P+ F GVGE +DLE F + I G D Sbjct: 262 LSVTGKPIKFAGVGEKTDDLEQFHPNRMADRILGMGD 298 >gi|225180938|ref|ZP_03734386.1| signal recognition particle protein [Dethiobacter alkaliphilus AHT 1] gi|225168419|gb|EEG77222.1| signal recognition particle protein [Dethiobacter alkaliphilus AHT 1] Length = 448 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 92/306 (30%), Positives = 158/306 (51%), Gaps = 21/306 (6%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F + S KL++ + + ++ + +D +RE + L+ +D+ V + V+ + + Sbjct: 3 FENLSTKLQDTLKRLRGKGKLTEKDVDVALRE-VRLALLEADVNFKVVKDFVKTVKERCL 61 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +V Q+V+ V++ + K++ N S P VI++VG+ G GKTT K Sbjct: 62 GAEVLESLTPGQQVIKIVNDELTKLMGESVAKLNQS-SAPPTVIMMVGLQGSGKTTSAAK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQA 189 LS + +L A D +R AAI QL++ ++ + ++G D A A +QA Sbjct: 121 LSNLLKKKQHSPLLVAADIYRPAAIKQLQVLGEQL--EVPVYQMGQQDPVQTAKAALEQA 178 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + + D +IIDTAGRLH + LMA ++ R+ K ++P +L V+DA TGQ+A+ Sbjct: 179 KRNRNDYVIIDTAGRLHIDEELMA---ELTRIEKAVNPD---EILLVVDAMTGQDAVNVA 232 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F G +G+++TK+DG RGG + + PV F G+GE + EPF + ++ Sbjct: 233 QSFKEKLGLSGVVLTKLDGDTRGGAALSVRAVTGCPVKFAGLGEKTDAFEPFYPERMASR 292 Query: 310 ITGCLD 315 I G D Sbjct: 293 ILGMGD 298 >gi|322418203|ref|YP_004197426.1| signal recognition particle protein [Geobacter sp. M18] gi|320124590|gb|ADW12150.1| signal recognition particle protein [Geobacter sp. M18] Length = 454 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 92/290 (31%), Positives = 151/290 (52%), Gaps = 20/290 (6%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLY 86 +++ + D +RE + L+ +D+ V + VE++ T+ +V V ++++ Sbjct: 21 VMTEENVKDALRE-VRLALLEADVNFKVVKDFVEKVRTRAVGTEVLQSLAPGQQVIKIVH 79 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 D EL+ +LM S+ + D + +P V I++VG+ G GKTT GKL++ + K +L Sbjct: 80 D--ELV--LLMGGSEDNSLDLAAKPPVAIMLVGLQGAGKTTSCGKLARYLKGQRKKPLLV 135 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 D +R AAI+QLK+ + + S+ + +A + A DV+I DTAGR Sbjct: 136 PADVYRPAAIEQLKVLGRQLGIETFDSQSNQKPLDICRDAHRYATLNGFDVIIYDTAGRH 195 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 + LM + + IR D AP +L V DA TGQ A+ + F+ G TG+I+TK Sbjct: 196 QIDDYLMEEL-EGIR-----DELAPREILFVADAMTGQEAVNVAQGFNDRLGITGVILTK 249 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +DG A+GG + I PV F+G+GE ++ L+ F A + I G D Sbjct: 250 LDGDAKGGAALSIKAVTGKPVKFVGLGEKLDALDVFHADRLVSRILGMGD 299 >gi|298675575|ref|YP_003727325.1| GTP-binding signal recognition particle SRP54 G- domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298288563|gb|ADI74529.1| GTP-binding signal recognition particle SRP54 G- domain protein [Methanohalobium evestigatum Z-7303] Length = 440 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 90/300 (30%), Positives = 148/300 (49%), Gaps = 28/300 (9%) Query: 28 LKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS--- 80 L++ + +++S R+D+ V ++++ L+++D+ V + + +++ + ++V Sbjct: 10 LQDALKKLVNSGRIDEKSVNDVVKDIQRALLQADVNVQLVMNMSKQIKERALKEEVPSGM 69 Query: 81 -----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 V R++Y ELI+ ++ N + P I+++G+ G GKTT KL++ Sbjct: 70 NPREHVIRIVY--QELIN--IIGEGTEINLE----PQTIMMIGLQGSGKTTTTSKLARYF 121 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 GLK + DTFR A QLK D+ S F E D+ + + K D Sbjct: 122 QKKGLKPAVICADTFRPGAYHQLKSLCDKNSIPFYGEEGNEDSLGIVERGMDKL--GKYD 179 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 VLIIDTAGR L+ + ++ + K P L VLDA GQ A Q F+ Sbjct: 180 VLIIDTAGRHSLEQDLIEEMEQINSIAK------PDKKLLVLDAAIGQQASEQARAFNES 233 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G +G+++TK+DGTA+GGG + V + F+GVGE DLE F F + + G D Sbjct: 234 IGISGVVITKLDGTAKGGGALSAVSETNSSIAFIGVGETSGDLEKFEPDRFISRLLGMGD 293 >gi|319786598|ref|YP_004146073.1| signal recognition particle protein [Pseudoxanthomonas suwonensis 11-1] gi|317465110|gb|ADV26842.1| signal recognition particle protein [Pseudoxanthomonas suwonensis 11-1] Length = 456 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 89/292 (30%), Positives = 148/292 (50%), Gaps = 23/292 (7%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 ++ + + VRE + L+ +D+ + V Q +++ + + ++V Q ++ V + Sbjct: 22 LTESNISEAVRE-VRIALLEADVALPVVQALIQRIKVRAVGQEVLKSLTPGQALIKVVRD 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDT 149 + ++ + N + P V L+ G+ G GKTT +GKL++ + + KVM+ + D Sbjct: 81 ELTAVMGSSATDLNLNVPA-PAVFLMAGLQGAGKTTTVGKLARHLKEKRKKKVMVVSADV 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI+QLK A++T F S+ G + A A+ VDVLI+DTAGRL + Sbjct: 140 YRPAAIEQLKTLAEQTGVLFFPSDAGQKPEDIVRAAIADARKSFVDVLIVDTAGRLAIDE 199 Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 +MA I + HA P L V+DA TGQ+A + F TG+++TK Sbjct: 200 AMMAEIKAL---------HAAVNPAETLFVVDAMTGQDAANTAKAFSEALPLTGVVLTKT 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 DG ARGG + + P+ F+G GE ++ L+ F +A I LD G+ Sbjct: 251 DGDARGGAALSVRYITGKPIKFVGTGEKVDGLDVFHPDRVAARI---LDMGD 299 >gi|289578454|ref|YP_003477081.1| signal recognition particle protein [Thermoanaerobacter italicus Ab9] gi|289528167|gb|ADD02519.1| signal recognition particle protein [Thermoanaerobacter italicus Ab9] Length = 446 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 71/205 (34%), Positives = 109/205 (53%), Gaps = 6/205 (2%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VI++VG+ G GKTT GKL+ + G +L A D R AAI QL++ + Sbjct: 101 PAVIMMVGLQGSGKTTACGKLANLLKKQGKNPLLVACDVVRPAAIKQLQVVGANVNVPVF 160 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 ++ +A + A++ DV+IIDTAGRLH + LM + + R ++ P Sbjct: 161 TMGDKANPVDIAKASIDYARSHNSDVIIIDTAGRLHIDEELMEELVNIKRAVQ------P 214 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 +L V+DA TGQ+A+ F+ TG+++TK+DG RGG + I + P+ ++G Sbjct: 215 DEILLVVDAMTGQDAVNVASSFNERLDITGVVLTKLDGDTRGGAALSIKAVTQKPIKYVG 274 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 GE + DLEPF ++ I G D Sbjct: 275 TGEKLTDLEPFYPNRMASRILGMGD 299 >gi|331223009|ref|XP_003324178.1| signal recognition particle protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309303168|gb|EFP79759.1| signal recognition particle protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 635 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 72/210 (34%), Positives = 109/210 (51%), Gaps = 8/210 (3%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P+VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 118 KPNVIMFVGLQGSGKTTSCTKLAVYYRRKGFKTALVCADTFRAGAFDQLKQNATKAKIPF 177 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH- 228 S +D A++ + + ++ +V+I+DT+GR + ++ +K++ Sbjct: 178 YGSHTETDPIAISTAGVTRFKRERFEVIIVDTSGRHRQET-------ELFEEMKQISAGV 230 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P+ + VLD GQ A Q F A +I+TKMDG A+GGG I V + P+ F Sbjct: 231 TPNLTIMVLDGAIGQAAEAQTRAFKEAADFGAIIVTKMDGHAKGGGAISAVAAAQTPIMF 290 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 +G GE ++DLE F + F + + G D GE Sbjct: 291 IGTGEHLHDLERFAPEPFISKLLGMGDIGE 320 >gi|90961606|ref|YP_535522.1| Signal recognition particle protein [Lactobacillus salivarius UCC118] gi|90820800|gb|ABD99439.1| Signal recognition particle protein [Lactobacillus salivarius UCC118] Length = 482 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 84/277 (30%), Positives = 139/277 (50%), Gaps = 13/277 (4%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPL 99 V E+ L+ +D+ V + V+ + ++ +V Q+++ V+E + K++ Sbjct: 34 VMREIRLALLEADVNFKVVKDFVKTVRSRAIGAEVLESLTPAQQIVKIVNEELVKVMGEE 93 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQL 158 + P N + P +I++VG+ G GKTT KL+ K+ + + + A D +R AAIDQL Sbjct: 94 AAPLNKS-AKIPTIIMMVGLQGAGKTTTASKLANKLKKEKNARPFMIAADVYRPAAIDQL 152 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 KI + D + + ++A+ KK D +IIDTAGRL + LM + Sbjct: 153 KILGKDIDVPVFSLGVDVDPVEIVRQGLEEAKDKKNDYVIIDTAGRLQIDEKLMQELSS- 211 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +K L P +L +DA TGQNA+ + F+ TG+++TK+DG RGG + I Sbjct: 212 ---IKEL--AQPDEILLTVDAMTGQNAVEVAKGFNDQLDVTGVVLTKLDGDTRGGAALSI 266 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + DL+ F ++ I G D Sbjct: 267 RAVTGKPIKFIGQGEKMTDLDVFYPDRMASRILGMGD 303 >gi|292659708|pdb|3KL4|A Chain A, Recognition Of A Signal Peptide By The Signal Recognition Pa Length = 433 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 98/313 (31%), Positives = 152/313 (48%), Gaps = 26/313 (8%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---V 67 L IR + F + S ++ + + I ++L+ LI SD+ V + + + Sbjct: 3 LENIRDAVRKFLTGSTPYEKAVDEFI----------KDLQKSLISSDVNVKLVFSLTAKI 52 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPFNWDFSHRPHVILVVGVNGVGK 124 +E L K V ++R + +S +++ L L K N + + P +I++VGV G GK Sbjct: 53 KERLNKEKPPSV-LERKEWFIS-IVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGK 110 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT GKL+ G KV L A D +R AA DQL ++ + +A + Sbjct: 111 TTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKK 170 Query: 185 AFKQAQAKKVDVLIIDTAGR--LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 K+D++I+DTAGR + L+ + +M VLK P V+ V+DA+ G Sbjct: 171 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK------PDDVILVIDASIG 224 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 Q A FH + +I+TKMDGTA+GGG + VV + F+G GE I++LE F Sbjct: 225 QKAYDLASRFHQASPIGSVIITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFN 284 Query: 303 AKDFSAVITGCLD 315 AK F + I G D Sbjct: 285 AKRFVSRILGMGD 297 >gi|237750758|ref|ZP_04581238.1| signal recognition particle protein [Helicobacter bilis ATCC 43879] gi|229373848|gb|EEO24239.1| signal recognition particle protein [Helicobacter bilis ATCC 43879] Length = 443 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 82/274 (29%), Positives = 143/274 (52%), Gaps = 9/274 (3%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102 D +EL+ L+++D+ ++I+++ K A + L +S+ + ++L +S Sbjct: 26 DKALDELKKALLKNDVYHKTTKEILQKTKDKTKANGIGRDSFLNALSQSLLEIL-EVSGV 84 Query: 103 FNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 + + ++ +P IL+ G+ G GKTT KL+ + KV+L D R AA+ QLK Sbjct: 85 YGFTYAQKPPTNILMSGLQGSGKTTTCAKLANYLKARNKKVLLVPCDLQRLAAVTQLKTL 144 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 ++ + SE S ++A EA K AQ DV+I DTAGRL + LM+ + ++ + Sbjct: 145 GEQIETEVFHSESNS-PVSVAKEAMKYAQDGLFDVVIYDTAGRLAIDESLMSELAEIKKA 203 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 + PH V D+ +GQ+ +R + FH G +G+I++K D ++GG + I Sbjct: 204 IN------PHDTFYVADSLSGQDGVRTAQTFHEKIGISGVILSKFDSDSKGGIALSIAYQ 257 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 IP+ F+G+GE I DL+ F+ + + G D Sbjct: 258 IGIPLRFMGMGEKIADLDLFMPDRIVSRLMGAGD 291 >gi|171912491|ref|ZP_02927961.1| signal recognition particle protein [Verrucomicrobium spinosum DSM 4136] Length = 479 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 139/283 (49%), Gaps = 10/283 (3%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHK 94 IS + D +RE + L+ +D+ VA+ +VE + TK ++V + ++ H Sbjct: 22 ISESNISDSMRE-IRMGLLEADVDFKVAKDLVENVKTKALGEEVLRTVSPSQQIVKIFHD 80 Query: 95 MLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 L+ L + P +L+ G+NG GKTT GKL+ + G K +L A D FR A Sbjct: 81 ELVVLLGEGTATLDLNPPQRLLIAGLNGAGKTTTSGKLAALLKKQGKKPLLVACDVFRPA 140 Query: 154 AIDQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 A+ QL + + E G DA A + + + + + I DTAGR + L+ Sbjct: 141 AVKQLVVLGESIGVPVFQPEEGEKDAVRAAKQGLEWVEKQGGGIAIFDTAGRQEVDEGLL 200 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + K+ V++ P VL V DA TGQ A+ + F+ G TGL+MTK+DG ARG Sbjct: 201 EELIKIKNVVQ------PREVLLVADAATGQQAVSVAKTFNDAIGITGLVMTKLDGDARG 254 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G L+ + PV F+G+GE I+ LE F + I G D Sbjct: 255 GALLSMKQVTGCPVKFVGMGEKIDQLEVFHPDRMAQRILGMGD 297 >gi|77464634|ref|YP_354138.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rhodobacter sphaeroides 2.4.1] gi|77389052|gb|ABA80237.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rhodobacter sphaeroides 2.4.1] Length = 505 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 83/269 (30%), Positives = 142/269 (52%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA+ V+++ K + V+ Q+V+ V + + +L + Sbjct: 38 LLEADVSLPVARDFVKKVQEKATGQGVTKSVTPGQQVVKIVHDELVSVLRGEGEADALKI 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P IL+VG+ G GKTT KL+K++++ G +V++A+ DT R AA++QL+I + Sbjct: 98 DNPPATILMVGLQGSGKTTTTAKLAKRLAERQGKRVLMASLDTNRPAAMEQLQILGAQIG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G A +A A Q DV+++DTAGRLH + +LM + + +R D Sbjct: 158 VDTLPIVKGESAVQIAKRAKTQGAMGGYDVIMLDTAGRLHIDEVLMDEV-QAVR-----D 211 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+D TGQ+A+ F G +G+++T+MDG RGG + + P+ Sbjct: 212 LAQPRETLLVVDGLTGQDAVNVAAEFDGKVGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ LE F + + I G D Sbjct: 272 RFVGLGEKMDALETFEPERIAGRILGMGD 300 >gi|332638237|ref|ZP_08417100.1| signal recognition particle protein [Weissella cibaria KACC 11862] Length = 488 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 88/285 (30%), Positives = 142/285 (49%), Gaps = 20/285 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93 D +RE + ++ L+ +D+ V + V + K V Q+++ V++ + Sbjct: 25 DADLRETMREIRLALLEADVNFTVVKDFVRNVREKAAGAKVLEGLNPAQQIVSIVNDELT 84 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152 M+ P N P VI++VG+ G GKTT GKL+ K+ S+ + ++ A D +R Sbjct: 85 AMMGESEVPLNVS-DKIPTVIMMVGLQGAGKTTTAGKLALKLKSEQNARPLMIAADVYRP 143 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 AAIDQLK ++ D E+G+DA + + +A K D + ID AGRL + Sbjct: 144 AAIDQLKTLGEQI--DVPVFEMGTDADPRDIVRQGLAKAAELKSDYVFIDAAGRLQIDEA 201 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + + + + P +L V+DA TGQNA+ E F+ TG+++TK+DG Sbjct: 202 LMQELADVKEIAQ------PDEILLVVDAMTGQNAVETAEGFNERLDVTGVVLTKLDGDT 255 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I P+ F+G GE + DL+ F ++ I G D Sbjct: 256 RGGAALSIRAVTGKPIKFVGQGEKMTDLDIFYPDRMASRILGMGD 300 >gi|254519213|ref|ZP_05131269.1| signal recognition particle protein [Clostridium sp. 7_2_43FAA] gi|226912962|gb|EEH98163.1| signal recognition particle protein [Clostridium sp. 7_2_43FAA] Length = 450 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 86/270 (31%), Positives = 141/270 (52%), Gaps = 16/270 (5%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V +K + + K +V Q+V+ V+E + ++ N++ Sbjct: 39 LLEADVNFKVVKKFISSVSEKCVGNEVLESLTPAQQVIKIVNEELTNLMGGSESKLNFN- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P VI++VG+ G GKTT+ GKL+ ++ K +L A D +R AAI QL++ + Sbjct: 98 SVGPTVIMMVGLQGAGKTTMSGKLALQLRKQNKKPLLVACDIYRPAAIKQLEVVGKQI-- 155 Query: 168 DFVCSEIGS--DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 D ++G + +A A+ +V+IIDTAGRLH + LM + K I+ Sbjct: 156 DIPVFQMGDKVNPVDIAKAGIAHARENGNNVIIIDTAGRLHIDENLMEEL-KSIK----- 209 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 + P +L V+D+ TGQ+A+ E F+ +G+I+TK+DG RGG + I + P Sbjct: 210 EEVNPQEILLVVDSMTGQDAVNVAESFNNSLDVSGVILTKLDGDTRGGAALSIRSVTEKP 269 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F+GVGE ++D E F S+ I G D Sbjct: 270 IKFIGVGEKMSDFEVFYPDRMSSRILGMGD 299 >gi|126463474|ref|YP_001044588.1| signal recognition particle protein [Rhodobacter sphaeroides ATCC 17029] gi|126105138|gb|ABN77816.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rhodobacter sphaeroides ATCC 17029] Length = 505 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 83/269 (30%), Positives = 142/269 (52%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA+ V+++ K + V+ Q+V+ V + + +L + Sbjct: 38 LLEADVSLPVARDFVKKVQEKATGQGVTKSVTPGQQVVKIVHDELVSVLRGEGEADALKI 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P IL+VG+ G GKTT KL+K++++ G +V++A+ DT R AA++QL+I + Sbjct: 98 DNPPATILMVGLQGSGKTTTTAKLAKRLAERQGKRVLMASLDTNRPAAMEQLQILGAQIG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G A +A A Q DV+++DTAGRLH + +LM + + +R D Sbjct: 158 VDTLPIVKGESAVQIAKRAKTQGAMGGYDVIMLDTAGRLHIDEVLMDEV-QAVR-----D 211 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+D TGQ+A+ F G +G+++T+MDG RGG + + P+ Sbjct: 212 LAQPRETLLVVDGLTGQDAVNVAAEFDGKVGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ LE F + + I G D Sbjct: 272 RFVGLGEKMDALETFEPERIAGRILGMGD 300 >gi|302654843|ref|XP_003019220.1| hypothetical protein TRV_06769 [Trichophyton verrucosum HKI 0517] gi|291182928|gb|EFE38575.1| hypothetical protein TRV_06769 [Trichophyton verrucosum HKI 0517] Length = 504 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 121/235 (51%), Gaps = 10/235 (4%) Query: 81 VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140 +Q+ ++D +L+ ++ P ++PF + +VI++VG+ G GKTT KL++ G Sbjct: 45 IQKAVFD--QLV-ALVDPHAEPFKPK-KGKSNVIMMVGLQGAGKTTTCTKLARHYQTKGF 100 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 K L DT R+ A DQLK A + + S +D ++ E + + ++ D++I+D Sbjct: 101 KAALVCADTLRAGAFDQLKQNATKAKIPYYGSLTQTDPVVVSSEGVAKFKKERFDIIIVD 160 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 T+GR L A + ++ +K P + VLD+T GQ A Q F + A Sbjct: 161 TSGRHRQEEDLFAEMTQIQSAIK------PDQTIMVLDSTIGQAAETQSAAFKSAADFGA 214 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK DG A GGG I V + P+ FLG GE + DLE F + F + G D Sbjct: 215 IIITKTDGHAAGGGAISAVAATRTPIIFLGTGEHMLDLERFAPRPFVQKLLGMGD 269 >gi|37525223|ref|NP_928567.1| signal recognition particle protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784650|emb|CAE13550.1| Signal recognition particle protein (P48) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 453 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 150/307 (48%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D ++E L ++ L+ +D+ + V + + K A Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFIS--CVKESA 59 Query: 77 KDVSVQRVLYDVSELIH-------KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V + L E + K + ++ N + P V+L+ G+ G GKTT + Sbjct: 60 VGHEVNKSLTPGQEFVKIVQNELVKAMGEVNSELNLS-TQPPAVVLMAGLQGAGKTTSVA 118 Query: 130 KLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL + KV++ + D +R AAI QL+ A DF S+ + +A + Sbjct: 119 KLGSFLKGKQKKKVLVVSADVYRPAAIKQLETLAQAVGIDFYPSDAQEKPVDIVTQAVQH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DVL++DTAGRLH + +M I ++ + + P L V+DA TGQ+A Sbjct: 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHKAIN------PVETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F+ TG+++TK+DG ARGG + I P+ FLGVGE + LEPF ++ Sbjct: 233 AKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|310641514|ref|YP_003946272.1| signal recognition (srp) component [Paenibacillus polymyxa SC2] gi|309246464|gb|ADO56031.1| Signal recognition (SRP) component [Paenibacillus polymyxa SC2] Length = 458 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 82/267 (30%), Positives = 137/267 (51%), Gaps = 10/267 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 L+ +D+ V + + ++ K K+V + V+ D+ LM S+ + Sbjct: 39 LLEADVNFKVVKDFIAKVKEKSVGKEVMDSFTPGMVIIDIVNKELTELMGGSQAKLAKAN 98 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P VI++VG+ G GKTT GKL+K + + +L AGD +R AAI QL+I ++ +A Sbjct: 99 KPPTVIMMVGLQGAGKTTTSGKLAKLLQKQNHRPLLVAGDIYRPAAIKQLQILGEQINAP 158 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + +A + + A+ D +IIDTAGRLH + LM + ++ +K Sbjct: 159 VFTLGDQTSPVEIAKQGLQHAKDNGNDYVIIDTAGRLHVDEELMEELRQIHTNVK----- 213 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P VL V+D+ TGQ+A+ E F+ TG+++TK+DG RGG + + P+ F Sbjct: 214 -PDEVLLVVDSMTGQDAVNVAEHFNNSLELTGVVLTKLDGDTRGGAALSVKAVTGCPIKF 272 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +GE ++ +EPF + ++ I G D Sbjct: 273 ATLGEKLDAMEPFHPERMASRILGMGD 299 >gi|149916818|ref|ZP_01905320.1| signal recognition particle protein [Plesiocystis pacifica SIR-1] gi|149822535|gb|EDM81924.1| signal recognition particle protein [Plesiocystis pacifica SIR-1] Length = 591 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 123/228 (53%), Gaps = 10/228 (4%) Query: 91 LIHKMLMPLSKPFNWDFSHRPHV---ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 + H+ L+ L P + + I++VG+ G GKTT GKL++K+ G KVML A Sbjct: 86 ICHEALVELMGPVDTSLARANKGVTGIMMVGLQGSGKTTTTGKLARKLQKEGHKVMLVAA 145 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 D +R AAI QL++ +R V + G++ + +A +QA + +D ++ DTAGRL Sbjct: 146 DVYRPAAIHQLQVLGERLGVP-VFARPGANPVDICRDATEQAAMEGMDFVLYDTAGRLTV 204 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + LM + K+ + P ++ V+DA GQ+A++ + F TG+++TK+D Sbjct: 205 DDALMEELEKIESSVH------PANIFLVIDAMIGQDAVQTAKAFDERLELTGVVLTKLD 258 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G ARGG + I P+ FLG+GE ++ LE F + + I G D Sbjct: 259 GDARGGAALSIKAATGKPIKFLGMGESLDKLEDFRPEGLAGRILGMGD 306 >gi|115386444|ref|XP_001209763.1| hypothetical protein ATEG_07077 [Aspergillus terreus NIH2624] gi|114190761|gb|EAU32461.1| hypothetical protein ATEG_07077 [Aspergillus terreus NIH2624] Length = 645 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 93/283 (32%), Positives = 141/283 (49%), Gaps = 40/283 (14%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSE-LIHKMLMP----- 98 +ED L++ ++ A ++ + EL+ K+ A SV L E + K+L P Sbjct: 356 MEDHLLKKNVAREAAVRLCDGVKRELVGKKTANFQSVDAALQLAMESALRKILTPTSSLD 415 Query: 99 -------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 +S P S RP+VI +VGVNGVGK+T +GK+ + +V++AA DTFR Sbjct: 416 LLREIDAVSSPTTKQQSPRPYVISIVGVNGVGKSTNLGKICYFLLQNNYRVLIAACDTFR 475 Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200 S A++QL++ A R + E G DAA +A +A + A K DV++ID Sbjct: 476 SGAVEQLRVHA-RNLKELSARENVGEVELYEKGYGKDAANVAKDAVEYGAANKFDVVLID 534 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258 TAGR HN+ LM+ + K + K P + V +A G +++ Q F+ GT Sbjct: 535 TAGRRHNDQRLMSSLEKFAKFAK------PDKIFMVGEALVGTDSVMQARNFNQAFGTGR 588 Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G I++K D G L+ +V IP+ FLGVG+ DL Sbjct: 589 NLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 631 >gi|328861050|gb|EGG10154.1| hypothetical protein MELLADRAFT_115576 [Melampsora larici-populina 98AG31] Length = 617 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 106/206 (51%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P+VI+ VG+ G GKTT KL+ G + L DTFR+ A DQLK A R F Sbjct: 115 KPNVIMFVGLQGSGKTTSCTKLAVYYQRKGFRTALVCADTFRAGAFDQLKQNAARAKVPF 174 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S +D ++ + + ++ +V+I+DT+GR + L + ++ ++ Sbjct: 175 FGSHTETDPIRISAAGVTKFKRERFEVIIVDTSGRHRQETELFEEMKQISSAVQ------ 228 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P+ + VLD GQ A Q F AG +I+TKMDG A+GGG I V + P+ F+ Sbjct: 229 PNLTIMVLDGAIGQAAEAQTRAFKEAAGFGAIIVTKMDGHAKGGGAISAVAATQTPIMFI 288 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+DLE F F + + G D Sbjct: 289 GTGEHIHDLERFSPGPFISKVLGMAD 314 >gi|149927162|ref|ZP_01915419.1| signal recognition particle protein [Limnobacter sp. MED105] gi|149824101|gb|EDM83322.1| signal recognition particle protein [Limnobacter sp. MED105] Length = 465 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 95/310 (30%), Positives = 154/310 (49%), Gaps = 27/310 (8%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIV----EELLT 72 F + S +L + +I R+ + +E L ++ L+ +D+ + V ++ + E+ L Sbjct: 2 FENLSDRLTRVVKNIKGEARITEANTQEMLREVRLALLEADVALPVVKEFINQVKEQALG 61 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHV-ILVVGVNGVGKTTVIG 129 + ++ + L + +HK L+ L K + + +P V IL+ G+ G GKTT G Sbjct: 62 EEVLNSLTPGQALVGI---VHKQLIKLIGEKTEEINLAAQPPVVILMAGLQGAGKTTTTG 118 Query: 130 KLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+K + D KV+ + D +R AAI+QLK + + A+F S+I +A A Sbjct: 119 KLAKYLKDNLKKKVLTVSADVYRPAAIEQLKTVSGQAGAEFFPSDITQKPVDIALAALNH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNA 245 A+ + DVLI+DTAGRL + +M I + HA P L V+DA GQ+A Sbjct: 179 AKRQFFDVLILDTAGRLGIDEAMMNEIKAL---------HAAVNPTETLFVIDAMLGQDA 229 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + F+ TG+++TKMDG ARGG + + P+ F+GVGE + E F Sbjct: 230 ANTAKAFNEALPLTGVVLTKMDGDARGGAALSVRQITGKPIKFMGVGEKLTGFEKFHPDR 289 Query: 306 FSAVITGCLD 315 + I G D Sbjct: 290 VAGRILGMGD 299 >gi|39654777|pdb|1QZW|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And Implications For Inter-Domain Communication gi|39654779|pdb|1QZW|C Chain C, Crystal Structure Of The Complete Core Of Archaeal Srp And Implications For Inter-Domain Communication gi|39654781|pdb|1QZW|E Chain E, Crystal Structure Of The Complete Core Of Archaeal Srp And Implications For Inter-Domain Communication gi|39654783|pdb|1QZW|G Chain G, Crystal Structure Of The Complete Core Of Archaeal Srp And Implications For Inter-Domain Communication gi|39654785|pdb|1QZX|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And Implications For Inter-Domain Communication gi|39654786|pdb|1QZX|B Chain B, Crystal Structure Of The Complete Core Of Archaeal Srp And Implications For Inter-Domain Communication Length = 440 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 98/313 (31%), Positives = 152/313 (48%), Gaps = 26/313 (8%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---V 67 L IR + F + S ++ + + I ++L+ LI SD+ V + + + Sbjct: 10 LENIRDAVRKFLTGSTPYEKAVDEFI----------KDLQKSLISSDVNVKLVFSLTAKI 59 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPFNWDFSHRPHVILVVGVNGVGK 124 +E L K V ++R + +S +++ L L K N + + P +I++VGV G GK Sbjct: 60 KERLNKEKPPSV-LERKEWFIS-IVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGK 117 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT GKL+ G KV L A D +R AA DQL ++ + +A + Sbjct: 118 TTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKK 177 Query: 185 AFKQAQAKKVDVLIIDTAGR--LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 K+D++I+DTAGR + L+ + +M VLK P V+ V+DA+ G Sbjct: 178 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK------PDDVILVIDASIG 231 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 Q A FH + +I+TKMDGTA+GGG + VV + F+G GE I++LE F Sbjct: 232 QKAYDLASRFHQASPIGSVIITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFN 291 Query: 303 AKDFSAVITGCLD 315 AK F + I G D Sbjct: 292 AKRFVSRILGMGD 304 >gi|125552939|gb|EAY98648.1| hypothetical protein OsI_20572 [Oryza sativa Indica Group] Length = 483 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 86/267 (32%), Positives = 133/267 (49%), Gaps = 12/267 (4%) Query: 51 DLLIR--SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 D+ IR SD+ + + + + L K +Q+ ++ +EL + ML P KP Sbjct: 43 DVQIRMVSDMRANIRRAVNLDALPAGTNKRRIIQQAVF--AELCN-MLDP-GKPSFTPTK 98 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +P V++ VG+ G GKTT K + G K L DTFR+ A DQLK A + Sbjct: 99 GKPSVVMFVGLQGSGKTTTCTKYAHYHQLKGFKPSLVCADTFRAGAFDQLKQNATKAKIP 158 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + S + SD +A E ++ + +K D++I+DT+GR + L + ++ K Sbjct: 159 YYGSYMESDPVKIAVEGVERFRKEKSDLIIVDTSGRHKQEAALFEEMRQVAEATK----- 213 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P V+ V+D + GQ A Q + F A +I+TK+DG A+GGG + V K PV F Sbjct: 214 -PDLVIFVMDGSIGQAAFDQAQAFKQSASVGAVIVTKLDGHAKGGGALSAVAATKSPVVF 272 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +G GE + D E F K F + + G D Sbjct: 273 IGTGEHMQDFEVFDVKPFVSRLLGMGD 299 >gi|167040350|ref|YP_001663335.1| signal recognition particle protein [Thermoanaerobacter sp. X514] gi|256750717|ref|ZP_05491602.1| signal recognition particle protein [Thermoanaerobacter ethanolicus CCSD1] gi|300914434|ref|ZP_07131750.1| signal recognition particle protein [Thermoanaerobacter sp. X561] gi|307724330|ref|YP_003904081.1| signal recognition particle protein [Thermoanaerobacter sp. X513] gi|166854590|gb|ABY92999.1| signal recognition particle protein [Thermoanaerobacter sp. X514] gi|256750300|gb|EEU63319.1| signal recognition particle protein [Thermoanaerobacter ethanolicus CCSD1] gi|300889369|gb|EFK84515.1| signal recognition particle protein [Thermoanaerobacter sp. X561] gi|307581391|gb|ADN54790.1| signal recognition particle protein [Thermoanaerobacter sp. X513] Length = 446 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 72/205 (35%), Positives = 109/205 (53%), Gaps = 6/205 (2%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VI++VG+ G GKTT GKL+ + G +L A D R AAI QL++ + Sbjct: 101 PAVIMMVGLQGSGKTTACGKLANLLKKQGKNPLLVACDVVRPAAIKQLQVVGANVNVPVF 160 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + +A + A++ DV+IIDTAGRLH + LM + + + ++ P Sbjct: 161 TMGDKVNPVDIAKASIDYAKSHNSDVIIIDTAGRLHVDEELMEELVNIKKAVQ------P 214 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 +L V+DA TGQ+A+ F+A TG+I+TK+DG RGG + I + P+ ++G Sbjct: 215 DEILLVVDAMTGQDAVNVASSFNARLDITGVILTKLDGDTRGGAALSIKAVTQKPIKYIG 274 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 GE + DLEPF ++ I G D Sbjct: 275 TGEKLTDLEPFYPDRMASRILGMGD 299 >gi|325263003|ref|ZP_08129739.1| signal recognition particle protein [Clostridium sp. D5] gi|324032097|gb|EGB93376.1| signal recognition particle protein [Clostridium sp. D5] Length = 451 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 89/304 (29%), Positives = 154/304 (50%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S + KL+ ++ S RL +D V+ L+++ L+ +D+ V + V+++ + Sbjct: 3 FDSLTEKLQNVFKNLRSKGRLTEDDVKAALKEVKMALLEADVNFKVVKGFVKDVQERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + +++ + VI++ G+ G GKTT KL Sbjct: 63 QDVMNGLNPGQMVIKIVNEEMVRLMGSETTEIQLQPGSAITVIMMAGLQGAGKTTTTAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K G K +L A D +R AAI QL+I ++ + + A +A A++ A Sbjct: 123 AGKYKLKGKKPLLVACDVYRPAAIKQLQINGEKQGVEVFSMGDKNKPADIAKAAYEHAVK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +++I+DTAGRLH + +MA + ++ + H + V+DA TGQ+A+ Sbjct: 183 NGNNIVILDTAGRLHIDEDMMAELQEIKEAV------TVHQTILVVDAMTGQDAVNVAGS 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 FH G G+I+TK+DG RGG + I P+ ++G+GE ++DLE F ++ I Sbjct: 237 FHEKIGIDGVIVTKLDGDTRGGAALSIKAVTGRPILYIGMGEKLSDLEQFYPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|115464807|ref|NP_001056003.1| Os05g0509500 [Oryza sativa Japonica Group] gi|33235565|dbj|BAC80140.1| signal recognition particle 54kDa subunit [Oryza sativa Japonica Group] gi|48475202|gb|AAT44271.1| putative signal recognition particle 54 KD protein (SRP54) [Oryza sativa Japonica Group] gi|113579554|dbj|BAF17917.1| Os05g0509500 [Oryza sativa Japonica Group] gi|215697189|dbj|BAG91183.1| unnamed protein product [Oryza sativa Japonica Group] gi|222632180|gb|EEE64312.1| hypothetical protein OsJ_19149 [Oryza sativa Japonica Group] Length = 483 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 86/267 (32%), Positives = 133/267 (49%), Gaps = 12/267 (4%) Query: 51 DLLIR--SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 D+ IR SD+ + + + + L K +Q+ ++ +EL + ML P KP Sbjct: 43 DVQIRMVSDMRANIRRAVNLDALPAGTNKRRIIQQAVF--AELCN-MLDP-GKPSFTPTK 98 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +P V++ VG+ G GKTT K + G K L DTFR+ A DQLK A + Sbjct: 99 GKPSVVMFVGLQGSGKTTTCTKYAHYHQLKGFKPSLVCADTFRAGAFDQLKQNATKAKIP 158 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + S + SD +A E ++ + +K D++I+DT+GR + L + ++ K Sbjct: 159 YYGSYMESDPVKIAVEGVERFRKEKSDLIIVDTSGRHKQEAALFEEMRQVAEATK----- 213 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P V+ V+D + GQ A Q + F A +I+TK+DG A+GGG + V K PV F Sbjct: 214 -PDLVIFVMDGSIGQAAFDQAQAFKQSASVGAVIVTKLDGHAKGGGALSAVAATKSPVVF 272 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +G GE + D E F K F + + G D Sbjct: 273 IGTGEHMQDFEVFDVKPFVSRLLGMGD 299 >gi|218884721|ref|YP_002429103.1| GTP-binding signal recognition particle SRP54, G- domain protein [Desulfurococcus kamchatkensis 1221n] gi|218766337|gb|ACL11736.1| GTP-binding signal recognition particle SRP54, G- domain protein [Desulfurococcus kamchatkensis 1221n] Length = 449 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 89/277 (32%), Positives = 134/277 (48%), Gaps = 20/277 (7%) Query: 48 ELEDLLIRSDI----GVAVAQKIVEELLTKRYAKDVSVQR-----VLYDVSELIHKMLMP 98 EL+ L+R+D+ V + +I E L +S + V +++ L+ P Sbjct: 29 ELQKELVRADVNLKLAVEITNRIKERALKSEPPPGISRREWFITIVYEELTRLLGGDKKP 88 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 KP +P VI++VG+ G GKTT KL+ G KV L A DTFR AA QL Sbjct: 89 SIKPLK-----KPWVIMLVGLQGSGKTTTAAKLAYFYKLEGYKVGLVAADTFRPAAYTQL 143 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 K ++ ++A ++A + ++ D++IIDTAGR H L+ + K+ Sbjct: 144 KQLGEQIGVPVYGEPDNNNAVSIAVKGVSFFIERRTDIIIIDTAGRHHKEEDLLDEMRKI 203 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +K P V+ V+DA+ GQ A + FH +I+TK+DGTA+GGG + Sbjct: 204 SEQVK------PDEVILVIDASIGQQAHNIAKKFHETTPIGSIIVTKLDGTAKGGGALSA 257 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 V V F+G GE I++LE F F + I G D Sbjct: 258 VAATGAMVKFIGTGEKIDELEVFNPPRFVSRILGLGD 294 >gi|225568167|ref|ZP_03777192.1| hypothetical protein CLOHYLEM_04241 [Clostridium hylemonae DSM 15053] gi|225162886|gb|EEG75505.1| hypothetical protein CLOHYLEM_04241 [Clostridium hylemonae DSM 15053] Length = 448 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 89/304 (29%), Positives = 152/304 (50%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S + KL+ ++ S RL +D V+E L+++ L+ +D+ V + ++ + + Sbjct: 3 FDSLTEKLQNIFKNLRSKGRLTEDDVKEALKEIKRALLAADVNFKVVKGFIKNVQERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + K++ + VI++ G+ G GKTT KL Sbjct: 63 QDVMNGLNPGQMVIKIVNEELVKLMGSETTEIKLQPGSAVTVIMMAGLQGAGKTTTTAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K G K +LAA D +R AAI QL++ ++ D + +A A AQ Sbjct: 123 AGKYKLKGKKPLLAACDVYRPAAIKQLQVNGEKQGVDVFSMGDSHKPSDIAKAALLHAQK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +++I+DTAGRLH + +MA + ++ + H + V+DA TGQ+A+ Sbjct: 183 NGNNIVILDTAGRLHIDEDMMAELQEIKEAVD------VHQTILVIDAMTGQDAVNVASD 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G G+I+TK+DG RGG + + P+ + G+GE ++DLE F ++ I Sbjct: 237 FNEKIGIDGVIITKLDGDTRGGAALSVKAVTGKPILYAGMGEKLSDLEQFYPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|216264790|ref|ZP_03436782.1| signal recognition particle protein [Borrelia burgdorferi 156a] gi|221217919|ref|ZP_03589386.1| signal recognition particle protein [Borrelia burgdorferi 72a] gi|223889344|ref|ZP_03623930.1| signal recognition particle protein [Borrelia burgdorferi 64b] gi|224533336|ref|ZP_03673930.1| signal recognition particle protein [Borrelia burgdorferi CA-11.2a] gi|226320468|ref|ZP_03796034.1| signal recognition particle protein [Borrelia burgdorferi 29805] gi|215981263|gb|EEC22070.1| signal recognition particle protein [Borrelia burgdorferi 156a] gi|221192225|gb|EEE18445.1| signal recognition particle protein [Borrelia burgdorferi 72a] gi|223885030|gb|EEF56134.1| signal recognition particle protein [Borrelia burgdorferi 64b] gi|224513501|gb|EEF83858.1| signal recognition particle protein [Borrelia burgdorferi CA-11.2a] gi|226234110|gb|EEH32825.1| signal recognition particle protein [Borrelia burgdorferi 29805] gi|312148436|gb|ADQ31095.1| signal recognition particle protein [Borrelia burgdorferi JD1] gi|312149665|gb|ADQ29736.1| signal recognition particle protein [Borrelia burgdorferi N40] Length = 444 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 86/276 (31%), Positives = 141/276 (51%), Gaps = 15/276 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF--- 103 E +++ L+ +D+ + V ++ + ++ + +K V V R + S+ I + L K Sbjct: 32 EIIKNSLVDADVNLRVIRRFLNSIIEE--SKGVKVLRGIDPKSQFIKIVNDNLVKFLGGK 89 Query: 104 NWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 N++ S P IL++G+ G GKTT KLS K+ KV+L A DTFR+AA++QLK Sbjct: 90 NYELSLHPANKQSYILMLGLQGSGKTTTCAKLSLKLKKENRKVLLVAADTFRAAAVEQLK 149 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 I + E D + + K A++ D +I+DT GRL S+L+ I K+ Sbjct: 150 ILGGQVGVPVFSIEGEKDPIKIVKASMKFAESNFFDSVIVDTRGRLEIESLLVEEIKKIK 209 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 +L+ P + V+D+ GQ A+ + F+ G TG I +K D RGG ++ Sbjct: 210 GILR------PAETILVVDSMMGQVAVNIAKEFNENVGLTGAIFSKFDSDTRGGAVLSFK 263 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P+ F+GVGE I DL+ F + ++ I G D Sbjct: 264 SICAVPIKFIGVGEKIEDLDSFYPERIASRILGMGD 299 >gi|218249508|ref|YP_002375194.1| signal recognition particle protein [Borrelia burgdorferi ZS7] gi|226321392|ref|ZP_03796919.1| signal recognition particle protein [Borrelia burgdorferi Bol26] gi|218164696|gb|ACK74757.1| signal recognition particle protein [Borrelia burgdorferi ZS7] gi|226233188|gb|EEH31940.1| signal recognition particle protein [Borrelia burgdorferi Bol26] Length = 444 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 86/276 (31%), Positives = 141/276 (51%), Gaps = 15/276 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF--- 103 E +++ L+ +D+ + V ++ + ++ + +K V V R + S+ I + L K Sbjct: 32 EIIKNSLVDADVNLRVIRRFLNSIIEE--SKGVKVLRGIDPKSQFIKIVNDNLVKFLGGK 89 Query: 104 NWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 N++ S P IL++G+ G GKTT KLS K+ KV+L A DTFR+AA++QLK Sbjct: 90 NYELSLHPANKQSYILMLGLQGSGKTTTCAKLSLKLKKENRKVLLVAADTFRAAAVEQLK 149 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 I + E D + + K A++ D +I+DT GRL S+L+ I K+ Sbjct: 150 ILGGQVGVPVFSIEGEKDPIKIVKASMKFAESNFFDSVIVDTRGRLEIESLLVEEIKKIK 209 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 +L+ P + V+D+ GQ A+ + F+ G TG I +K D RGG ++ Sbjct: 210 GILR------PAETILVVDSMMGQVAVNIAKEFNENVGLTGAIFSKFDSDTRGGAVLSFK 263 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P+ F+GVGE I DL+ F + ++ I G D Sbjct: 264 SICAVPIKFIGVGEKIEDLDSFYPERIASRILGMGD 299 >gi|300214422|gb|ADJ78838.1| Signal recognition particle protein [Lactobacillus salivarius CECT 5713] Length = 479 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 82/277 (29%), Positives = 139/277 (50%), Gaps = 13/277 (4%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPL 99 V E+ L+ +D+ V + V+ + ++ +V Q+++ V+E + K++ Sbjct: 31 VMREIRLALLEADVNFKVVKDFVKTVRSRAIGAEVLESLTPAQQIVKIVNEELVKVMGEE 90 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQL 158 + P N + P +I++VG+ G GKTT KL+ K+ + + + A D +R AAIDQL Sbjct: 91 AAPLNKS-AKIPTIIMMVGLQGAGKTTTASKLANKLKKEKNARPFMIAADVYRPAAIDQL 149 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 KI + D + + ++A+ KK D +IIDTAGRL + LM + + Sbjct: 150 KILGKDIDVPVFSLGVDVDPVEIVRQGLEEAKDKKNDYVIIDTAGRLQIDEKLMQELSSI 209 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 + + P +L +DA TGQNA+ + F+ TG+++TK+DG RGG + I Sbjct: 210 KELAQ------PDEILLTVDAMTGQNAVEVAKGFNDQLDVTGVVLTKLDGDTRGGAALSI 263 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + DL+ F ++ I G D Sbjct: 264 RAVTGKPIKFIGQGEKMTDLDVFYPDRMASRILGMGD 300 >gi|298292734|ref|YP_003694673.1| signal recognition particle protein [Starkeya novella DSM 506] gi|296929245|gb|ADH90054.1| signal recognition particle protein [Starkeya novella DSM 506] Length = 517 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 86/274 (31%), Positives = 146/274 (53%), Gaps = 13/274 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKP 102 E+ LI +D+ + V + + + T+ +V SV Q V+ V++ + ML +KP Sbjct: 33 EVRRALIEADVALDVVRSFTDRVRTRAVGAEVIKSVTPGQMVVKIVNDELVAMLGSDAKP 92 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIW 161 + D + P +L+VG+ G GKTT K++K+++D + KV++A+ DT R AA++QL Sbjct: 93 IDLDAAP-PVPVLMVGLQGSGKTTSTAKIAKRLTDRSNRKVLMASLDTRRPAAMEQLATL 151 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 + + + G A +A A + A+ DV+++DTAGR+ + LMA + + ++ Sbjct: 152 GSQVGVETLPIVAGQSAVQIARRAMEAARLGGYDVVMLDTAGRVTLDEALMAEVAE-VKA 210 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 R PH VL V D+ TGQ+A+ + F G TG+++T+ DG RGG + + Sbjct: 211 ATR-----PHEVLLVADSLTGQDAVNTAKAFDERVGLTGIVLTRADGDGRGGAALSMRAV 265 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ LG GE ++ LE F + + I G D Sbjct: 266 TGKPIKLLGTGEKMDALEDFDPRRVAGRILGMGD 299 >gi|227890693|ref|ZP_04008498.1| signal recognition particle protein [Lactobacillus salivarius ATCC 11741] gi|227867631|gb|EEJ75052.1| signal recognition particle protein [Lactobacillus salivarius ATCC 11741] Length = 482 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 84/277 (30%), Positives = 139/277 (50%), Gaps = 13/277 (4%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPL 99 V E+ L+ +D+ V + V+ + ++ +V Q+++ V+E + K++ Sbjct: 34 VMREIRLALLEADVNFKVVKDFVKTVRSRAIGAEVLESLTPAQQIVKIVNEELVKVMGEE 93 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQL 158 + P N + P +I++VG+ G GKTT KL+ K+ + + + A D +R AAIDQL Sbjct: 94 AAPLNKS-AKIPTIIMMVGLQGAGKTTTASKLANKLKKEKNARPFMIAADVYRPAAIDQL 152 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 KI + D + + ++A+ KK D +IIDTAGRL + LM + Sbjct: 153 KILGKDIDVPVFSLGVDVDPVEIVRQGLEEAKDKKNDYVIIDTAGRLQIDEKLMQELSS- 211 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +K L P +L +DA TGQNA+ + F+ TG+++TK+DG RGG + I Sbjct: 212 ---IKEL--AQPDEILLTVDAMTGQNAVEVAKGFNDQLDVTGVVLTKLDGDTRGGAALSI 266 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + DL+ F ++ I G D Sbjct: 267 RAVTGKPIKFIGQGEKMTDLDVFYPDRMASRILGMGD 303 >gi|261839880|gb|ACX99645.1| signal recognition particle protein [Helicobacter pylori 52] Length = 448 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ VA+++++++ ++ + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L L +L LS + F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVL+ Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + ++ VL PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I +P+ F+G GE I DL+ FV + + G D Sbjct: 235 SGVVLSKFDSDSKGGVALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291 >gi|149194109|ref|ZP_01871207.1| Signal recognition particle protein [Caminibacter mediatlanticus TB-2] gi|149136062|gb|EDM24540.1| Signal recognition particle protein [Caminibacter mediatlanticus TB-2] Length = 449 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 93/303 (30%), Positives = 158/303 (52%), Gaps = 27/303 (8%) Query: 27 KLKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRY--AKD 78 ++ +G I+ R+ D + +EL+ L+++D+ K V+ELL K K Sbjct: 4 RISDGFRSAINKIRMKDDEKSLKKALDELKKNLLKADVHF----KTVKELLRKVEIETKK 59 Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKM 135 + R + + L + L+ P N+ F S P V+++ G+ G GKTT KL+ + Sbjct: 60 AGIGRANF-LKALEEALKEILTAPGNYGFVYASKPPTVVMMTGLQGSGKTTTTAKLAYYL 118 Query: 136 SD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 + KV++ A D R AA++QL+ A++ D E +A +A + ++A+ K Sbjct: 119 KNFKKKKVLMVAADLQRLAAVEQLRQLAEQNELDIFYDENAKNAVEVAKKGVEEAKNKFY 178 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 DV++IDTAGRL + LM ++I + K +DP+ + V D+ TG++A+ + F Sbjct: 179 DVVLIDTAGRLAIDEALM---NELIEMKKEVDPN---EIFYVADSLTGKDAINTAKAFDE 232 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKI--PVYFLGVGEGINDLEPFVAKDFSAVITG 312 TG+I+TK DG ++GG + + + H++ P+ F+G GE I DLE FV + I G Sbjct: 233 KLDITGVILTKYDGDSKGG--VALSIAHQVGKPLRFIGTGEKIADLEVFVPDRIVSRIMG 290 Query: 313 CLD 315 D Sbjct: 291 AGD 293 >gi|157374297|ref|YP_001472897.1| signal recognition particle protein [Shewanella sediminis HAW-EB3] gi|157316671|gb|ABV35769.1| signal recognition particle protein [Shewanella sediminis HAW-EB3] Length = 457 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 97/309 (31%), Positives = 152/309 (49%), Gaps = 25/309 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSRTLKNISGRGRLTEDNVKDTLREVRMALLEADVALPVVRAFVNGV--KERA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPH-VILVVGVNGVGKTTVIGK 130 + V + L I + L D S +P VI++ G+ G GKTT + K Sbjct: 60 VGLEVSKSLSPGQAFIKIVQSELENAMGEANEGLDLSAQPPAVIMMAGLQGAGKTTSVAK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 LSK + + K V++ + D +R AAI QL+ A +F S++ + A A Sbjct: 120 LSKFLRERDKKSVLVVSADVYRPAAIKQLETLAAEVEVEFFPSDVSQKPIDIVNAAMTHA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246 + K +DV+I+DTAGRLH + +M I + HA P L V+DA TGQ+A Sbjct: 180 KLKFIDVVIVDTAGRLHVDEGMMDEIKAL---------HAAVNPVETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TG+++TK+DG ARGG + I P+ FLGVGE + LEPF Sbjct: 231 NTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRI 290 Query: 307 SAVITGCLD 315 ++ I G D Sbjct: 291 ASRILGMGD 299 >gi|307718738|ref|YP_003874270.1| hypothetical protein STHERM_c10520 [Spirochaeta thermophila DSM 6192] gi|306532463|gb|ADN01997.1| hypothetical protein STHERM_c10520 [Spirochaeta thermophila DSM 6192] Length = 443 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 72/203 (35%), Positives = 102/203 (50%), Gaps = 6/203 (2%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +IL+ G+ G GKTT KL+ + G + +L A D R AAIDQL+ Sbjct: 103 IILLAGLQGSGKTTTAAKLALHLKKKGRRPLLVAADLARPAAIDQLETLGATIDVPVYTD 162 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 D L A A+ + VD LI+DTAGR + LM + +++R L +P Sbjct: 163 RSLKDPRTLVKRALSHAKRQAVDTLIVDTAGRHQVDRELMDELSRLVRDL------SPDE 216 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 L V DA TGQ A+ + F+ G TG+++TK D RGG + I P+ F+GVG Sbjct: 217 TLLVADAMTGQTAVDVAKAFNEAVGITGVVLTKFDSDTRGGAALSIRTITGAPIKFIGVG 276 Query: 293 EGINDLEPFVAKDFSAVITGCLD 315 E ++DLEPF ++ I G D Sbjct: 277 EKVDDLEPFYPDRIASRILGMGD 299 >gi|291223336|ref|XP_002731666.1| PREDICTED: signal recognition particle 54kDa-like [Saccoglossus kowalevskii] Length = 492 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P+VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 100 KPNVIMFVGLQGSGKTTTCTKLAYHYQKKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E + + + +++I+DT+GR L +L+ + + Sbjct: 160 YGSYTEMDPVVIAAEGVDKFKKENFEIIIVDTSGRHKQEDSLFE------EMLQVSNVTS 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P +V+ V+DAT GQ Q F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 214 PDNVIYVMDATIGQACESQARAFKEKVDVASVIITKLDGHAKGGGALSAVAATKSPIIFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D E F K F + + G D Sbjct: 274 GTGEHIDDFEQFKTKPFVSKLLGMGD 299 >gi|224370185|ref|YP_002604349.1| Ffh [Desulfobacterium autotrophicum HRM2] gi|223692902|gb|ACN16185.1| Ffh [Desulfobacterium autotrophicum HRM2] Length = 441 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 89/285 (31%), Positives = 142/285 (49%), Gaps = 13/285 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 +S + +D+G+++ + L+ +D+ VA+K++ ++ + ++V Q+V+ V + Sbjct: 22 LSEKAIDEGLKQ-VRMALLEADVNYRVAKKVISDIHRRALGQEVMESLTPGQQVIKIVYD 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 M+ + N + P +++VG+ G GKTT GKL+ + G + L D Sbjct: 81 EFSTMMGSAHEGLNLG-NRVPETVMLVGLQGAGKTTTAGKLALYLKKQGKRPFLVPVDLH 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAIDQLK + S + A K A + D L++DTAGRLH + Sbjct: 140 RPAAIDQLKKLGKQLGIPVFDSTQEMKLGDICRAAEKMAGQEGFDTLLVDTAGRLHVDDG 199 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LMA + ++ ++L P L V DA TGQ+A+ F TG+I+TKMDG A Sbjct: 200 LMAELVELKKMLN------PVETLLVADAMTGQDAVNIAGAFDKAVDLTGVILTKMDGDA 253 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I P+ F+GVGE LEPF + ++ I G D Sbjct: 254 RGGAALSIKAVTGKPLKFIGVGEKSTGLEPFHPERMASRILGMGD 298 >gi|124008224|ref|ZP_01692921.1| signal recognition particle protein [Microscilla marina ATCC 23134] gi|123986323|gb|EAY26145.1| signal recognition particle protein [Microscilla marina ATCC 23134] Length = 434 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 88/309 (28%), Positives = 158/309 (51%), Gaps = 23/309 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDD-GVREELEDL---LIRSDIGVAVAQKIVE----ELLT 72 F S S +++E + + R+ + V ++D+ LI +D+ +A+++ + E L Sbjct: 2 FESLSQRIEEAVHKLKGKGRITEVNVASTIKDIRRALIDADVNYKIAKQVTDDIKVEALG 61 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++ K ++ +VL +++H+ L L KP + P ++L+ G+ G GKTT GK Sbjct: 62 RKVLKSLAPGQVLI---KIVHEKLTELMGGKPQEANLKGSPAIVLMAGLQGSGKTTFSGK 118 Query: 131 LSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L+ + KV+L A D +R AAI+QLK+ ++ + + A+A A + A Sbjct: 119 LANLIQQKQHKKVLLVACDVYRPAAIEQLKVVGEQIGVEVYAEPDNKNPVAIAQNAVEHA 178 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + V+++DTAGRL + ++M I ++ ++ P L V+DA TGQ+A+ Sbjct: 179 KTHHYKVVVVDTAGRLAIDEVMMLEIAQIKAAIQ------PSETLFVVDAMTGQDAVNTA 232 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ G+++TKMDG RGG + I P+ F+G GE + L+ F + + Sbjct: 233 KAFNERIDFDGVVLTKMDGDTRGGAALSIRAVVDKPIKFIGTGEQMRALDTFRPEGMAGR 292 Query: 310 ITGCLDYGE 318 I LD G+ Sbjct: 293 I---LDMGD 298 >gi|146281574|ref|YP_001171727.1| signal recognition particle protein Ffh [Pseudomonas stutzeri A1501] gi|145569779|gb|ABP78885.1| signal recognition particle protein Ffh [Pseudomonas stutzeri A1501] Length = 482 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 90/319 (28%), Positives = 160/319 (50%), Gaps = 20/319 (6%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVA 61 +++ S+ W+ F + + +L + + + +L +D +++ L ++ L+ +D+ + Sbjct: 16 LSTSSVEWLM-----FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALP 70 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHR---PHVILVV 117 V + V + + +VS +++ L L N D + P V+L+ Sbjct: 71 VVKDFVNRVKERAVGTEVSKSLTPGQAFVKIVRAELEELMGAANEDLALNVTPPAVVLMA 130 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 G+ G GKTT +GKL++ + + K V++ + D +R AAI QL+ A F S+ Sbjct: 131 GLQGAGKTTTVGKLARFLKERKKKTVLVVSADVYRPAAIKQLETLAGEVGVTFFPSDTSQ 190 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 +A A ++A+ K +DV+++DTAGRL ++ +MA I + +K P L V Sbjct: 191 KPVDIAQAAIREAKLKFIDVVLVDTAGRLAIDAEMMAEIQAVHAAIK------PAETLFV 244 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 +DA TGQ+A F TG+++TK+DG ARGG + + P+ FLG+GE + Sbjct: 245 VDAMTGQDAANTARAFGDALPLTGVVLTKVDGDARGGAALSVRHVTGKPIKFLGMGEKSD 304 Query: 297 DLEPFVAKDFSAVITGCLD 315 LEPF ++ I G D Sbjct: 305 ALEPFHPDRIASRILGMGD 323 >gi|255553241|ref|XP_002517663.1| signal recognition particle 54 kD protein, putative [Ricinus communis] gi|223543295|gb|EEF44827.1| signal recognition particle 54 kD protein, putative [Ricinus communis] Length = 497 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 91/290 (31%), Positives = 144/290 (49%), Gaps = 19/290 (6%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVA-------QKIVE-ELLTKRYAKDVSVQRVLY 86 II + L+D + E + L++SD+ + +KIV + L + K +Q+ ++ Sbjct: 22 IIDEKALNDCLNE-ITRALLQSDVQFKLVRDMQTNIKKIVNLDDLAAGHNKRKIIQQAIF 80 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + EL KML P KP + V++ VG+ G GKTT K + G K L Sbjct: 81 N--ELC-KMLDP-GKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 DTFR+ A DQLK A + F S + SD +A E ++ + + D++I+DT+GR Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHK 196 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + L + ++ K P V+ V+D++ GQ A Q + F +I+TKM Sbjct: 197 QEAALFEEMRQVSEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKM 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316 DG A+GGG + V K PV F+G GE +++ E F K F + + G D+ Sbjct: 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300 >gi|315655725|ref|ZP_07908623.1| signal recognition particle protein [Mobiluncus curtisii ATCC 51333] gi|315489789|gb|EFU79416.1| signal recognition particle protein [Mobiluncus curtisii ATCC 51333] Length = 557 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 96/312 (30%), Positives = 151/312 (48%), Gaps = 25/312 (8%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +LT+ F + K K +D+ D ++ LI +D+ + V + + K Y Sbjct: 8 RLTESFKNLRKKGKLKDSDV-------DATVSDIRRALIEADVALEVVKDFTATVKEKAY 60 Query: 76 AKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129 S Q+++ V++ + +L + ++ + P V ++ G+ G GKTT+ G Sbjct: 61 GAARSEALNPAQQIVKIVNDELINILGGEDRELHFSKPGKGPTVFMLAGLQGAGKTTLAG 120 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAF 186 KL K ++ KV+L A D R A++QL+I ++ E G+ D +A A Sbjct: 121 KLGKWLAKENRKVLLVAADLQRPNAVNQLQIVGEQAGVTVFAPEPGNGVGDPVDVARRAL 180 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A DV+I+DTAGRL + LMA + IR D P VL VLDA GQ+A+ Sbjct: 181 ALASGSGYDVMIVDTAGRLGVDEELMA-QARSIR-----DEVQPDEVLFVLDAMIGQDAV 234 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 R F TG+++TK+DG ARGG + + +PV F GEG++D E F A Sbjct: 235 RTARAFQEGVDFTGVVLTKLDGDARGGAALSVRGVTGVPVLFASTGEGLDDFERFHADRM 294 Query: 307 SAVITGCLDYGE 318 ++ I LD G+ Sbjct: 295 ASRI---LDMGD 303 >gi|126732663|ref|ZP_01748459.1| signal recognition particle protein [Sagittula stellata E-37] gi|126706793|gb|EBA05863.1| signal recognition particle protein [Sagittula stellata E-37] Length = 503 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 88/272 (32%), Positives = 140/272 (51%), Gaps = 18/272 (6%) Query: 53 LIRSDIGVAVAQKIVEEL--------LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104 L+ +D+ + VA++ V+ + +TK V ++++D ELI +L +P Sbjct: 38 LLEADVSLPVARQFVKAVEKKATGAAVTKSVTPGQQVVKIVHD--ELIA-VLSGEGEPGK 94 Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWAD 163 + P IL+VG+ G GKTT KL+K++ + G KV++A+ D R AA++QL I Sbjct: 95 LKIDNPPAPILMVGLQGGGKTTTTAKLAKRLKERDGKKVLMASLDVNRPAAMEQLAILGT 154 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + D + G D A+A A QA DV ++DTAGRL + LM + + ++ Sbjct: 155 QIGVDTLPIVKGEDPVAIAKRAKTQAGLGGYDVYLLDTAGRLSIDEELM----RQVEAVR 210 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 D P L V+D TGQ+A+ E F G TG+++T+MDG RGG + + Sbjct: 211 --DVANPRETLLVVDGLTGQDAVHTAENFDTRVGITGVVLTRMDGDGRGGAALSMRAITG 268 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G+GE ++ LE F + I G D Sbjct: 269 KPIKFVGLGEKMDALETFEPDRIAGRILGMGD 300 >gi|15595039|ref|NP_212828.1| signal recognition particle protein (ffh) [Borrelia burgdorferi B31] gi|2688634|gb|AAC67049.1| signal recognition particle protein (ffh) [Borrelia burgdorferi B31] Length = 447 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 86/276 (31%), Positives = 141/276 (51%), Gaps = 15/276 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF--- 103 E +++ L+ +D+ + V ++ + ++ + +K V V R + S+ I + L K Sbjct: 35 EIIKNSLVDADVNLRVIRRFLNSIIEE--SKGVKVLRGIDPKSQFIKIVNDNLVKFLGGK 92 Query: 104 NWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 N++ S P IL++G+ G GKTT KLS K+ KV+L A DTFR+AA++QLK Sbjct: 93 NYELSLHPANKQSYILMLGLQGSGKTTTCAKLSLKLKKENRKVLLVAADTFRAAAVEQLK 152 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 I + E D + + K A++ D +I+DT GRL S+L+ I K+ Sbjct: 153 ILGGQVGVPVFSIEGEKDPIKIVKASMKFAESNFFDSVIVDTRGRLEIESLLVEEIKKIK 212 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 +L+ P + V+D+ GQ A+ + F+ G TG I +K D RGG ++ Sbjct: 213 GILR------PAETILVVDSMMGQVAVNIAKEFNENVGLTGAIFSKFDSDTRGGAVLSFK 266 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P+ F+GVGE I DL+ F + ++ I G D Sbjct: 267 SICAVPIKFIGVGEKIEDLDSFYPERIASRILGMGD 302 >gi|258514481|ref|YP_003190703.1| signal recognition particle protein [Desulfotomaculum acetoxidans DSM 771] gi|257778186|gb|ACV62080.1| signal recognition particle protein [Desulfotomaculum acetoxidans DSM 771] Length = 449 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 90/292 (30%), Positives = 148/292 (50%), Gaps = 20/292 (6%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F+S + +L+E + + L + V E L ++ L+ +D+ V + V ++ K Sbjct: 3 FSSLAERLQETFKKLRNKGSLKEADVSEALREVRVALLEADVNFKVVKDFVNKVKEKAIG 62 Query: 77 KDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSH------RPHVILVVGVNGVGKTTVIG 129 +D+ S V +++H+ LM L ++S P VI++VG++G GKTT Sbjct: 63 QDILSSLTPAQQVIKIVHQELMDL---MGGEYSKINLAPKPPTVIMMVGLHGAGKTTTSA 119 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G + +L AGD R AAI QL++ ++ A +A A + A Sbjct: 120 KLANFLRKQGRRPLLVAGDIHRPAAIKQLQVLGEQLDIPVFTMGDKQAPAVIARAAIENA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 D++IIDTAGRLH + LM + + +K P+ +L V+DA TGQ+A+ Sbjct: 180 SNSGRDLVIIDTAGRLHIDEELMDELEAVKSEVK------PNEILLVVDAMTGQDAVNVA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 E+F+ G+IMTK+DG RGG + + P+ F G+GE ++ LE F Sbjct: 234 EVFNRRMQLNGVIMTKLDGDTRGGAALSVKAVTGCPIKFAGIGEKLDALETF 285 >gi|330834334|ref|YP_004409062.1| signal recognition particle subunit FFH/SRP54 (srp54) [Metallosphaera cuprina Ar-4] gi|329566473|gb|AEB94578.1| signal recognition particle subunit FFH/SRP54 (srp54) [Metallosphaera cuprina Ar-4] Length = 446 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 90/282 (31%), Positives = 141/282 (50%), Gaps = 26/282 (9%) Query: 47 EELEDLLIRSDIGV----AVAQKIVEELLTKRYAKDVSVQ----RVLYD-VSELIHKMLM 97 +EL+ LI SD+ V ++ KI E L + ++ + +V+YD +S L Sbjct: 28 KELQKSLISSDVQVKLVLSLTNKIKERLKKETPPSNLERREWFIKVVYDELSALFGGDKE 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P P P VI++VGV G GKTT GKL+ G KV L D +R AA++Q Sbjct: 88 PEVNP-----KSNPWVIMLVGVQGTGKTTTAGKLAYFYKRRGYKVALVGADVYRPAALEQ 142 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ + + SDA ++ + +++ +++IIDTAGR G G+ Sbjct: 143 LRQIGKQINVPVYGEPDSSDAVGISERGVAKFLSERYELIIIDTAGR--------HGYGE 194 Query: 218 MIRVLKRL----DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 ++L + + P+ V+ V+DA+ GQ A + FH + +I+TKMDGTA+GG Sbjct: 195 ESKLLDEMKEIYEKVKPNEVVLVIDASLGQKAFDLAKKFHEASNVGSIIITKMDGTAKGG 254 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + V + F+G+GE I++LE F + F A I G D Sbjct: 255 GALSAVAATGARIKFIGLGEKIDELEVFNPRRFVARILGMGD 296 >gi|157879167|pdb|1LS1|A Chain A, T. Aquaticus Ffh Ng Domain At 1.1a Resolution Length = 295 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 143/307 (46%), Gaps = 28/307 (9%) Query: 21 FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S +L+E I + R+ + E+ L+ +D+ + VA+ VE + + Sbjct: 2 FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALG 61 Query: 77 KDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 K V + +L V E + + L +P+ K N F +VG+ G GKTT Sbjct: 62 KQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWF--------LVGLQGSGKTT 113 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL+ G + +L A DT R AA +QL++ ++ + G ++ Sbjct: 114 TAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 ++A+ + D++++DTAGRL + LM + ++ VL P VL VLDA TGQ AL Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEAL 227 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G TGL++TK+DG ARGG + P+YF GV E LEPF + Sbjct: 228 SVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERL 287 Query: 307 SAVITGC 313 + I G Sbjct: 288 AGRILGM 294 >gi|5822519|pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition Protein Ffh From Thermus Aquaticus gi|5822520|pdb|3NG1|B Chain B, N And Gtpase Domains Of The Signal Sequence Recognition Protein Ffh From Thermus Aquaticus gi|42543232|pdb|1OKK|A Chain A, Homo-Heterodimeric Complex Of The Srp Gtpases gi|118137447|pdb|2CNW|A Chain A, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy gi|118137448|pdb|2CNW|B Chain B, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy gi|118137449|pdb|2CNW|C Chain C, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy gi|122920833|pdb|2J7P|A Chain A, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh And Ftsy gi|122920834|pdb|2J7P|B Chain B, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh And Ftsy gi|157832108|pdb|1NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition Protein Ffh From Thermus Aquaticus gi|315113199|pdb|2XKV|A Chain A, Atomic Model Of The Srp-Ftsy Early Conformation Length = 294 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 143/307 (46%), Gaps = 28/307 (9%) Query: 21 FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S +L+E I + R+ + E+ L+ +D+ + VA+ VE + + Sbjct: 2 FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALG 61 Query: 77 KDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 K V + +L V E + + L +P+ K N F +VG+ G GKTT Sbjct: 62 KQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWF--------LVGLQGSGKTT 113 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL+ G + +L A DT R AA +QL++ ++ + G ++ Sbjct: 114 TAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 ++A+ + D++++DTAGRL + LM + ++ VL P VL VLDA TGQ AL Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEAL 227 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G TGL++TK+DG ARGG + P+YF GV E LEPF + Sbjct: 228 SVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERL 287 Query: 307 SAVITGC 313 + I G Sbjct: 288 AGRILGM 294 >gi|166368109|ref|YP_001660382.1| signal recognition particle protein [Microcystis aeruginosa NIES-843] gi|166090482|dbj|BAG05190.1| signal recognition particle protein [Microcystis aeruginosa NIES-843] Length = 478 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 90/290 (31%), Positives = 145/290 (50%), Gaps = 29/290 (10%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85 D ISS + D ++E + L+ +D+ + V + + E+ + +V +++ Sbjct: 20 DKISSANIQDTLKE-VRRALLEADVNLQVVKGFIAEVEKQALGAEVISGVNPGQQFIKIV 78 Query: 86 YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 YD EL+ M +PL++ P VIL+ G+ G GKTT KL+ + Sbjct: 79 YD--ELVKIMGESNVPLAQA-----DKPPTVILMAGLQGTGKTTATAKLALYLRKQSKSC 131 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIID 200 ++ A D +R AAIDQL + + E+GS A +A + ++A+ VD +IID Sbjct: 132 LMVATDVYRPAAIDQLITLGKQINVPVF--EMGSQANPVDIARQGVEKAKELGVDTVIID 189 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL ++ +M + ++ +++K P L V+DA TGQ A FH G TG Sbjct: 190 TAGRLQIDTQMMGELAQIKKIVK------PDDTLLVVDAMTGQEAASLTNTFHQQIGITG 243 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 I+TK+DG RGG + + P+ F+GVGE + LEPF ++ I Sbjct: 244 AILTKLDGDTRGGAALSVRQISGQPIKFVGVGEKVEALEPFYPDRLASRI 293 >gi|58386979|ref|XP_315212.2| AGAP004610-PA [Anopheles gambiae str. PEST] gi|55239546|gb|EAA10561.2| AGAP004610-PA [Anopheles gambiae str. PEST] Length = 504 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 150/307 (48%), Gaps = 21/307 (6%) Query: 15 RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT-- 72 RK+T S S II+ LD ++E + L+ +D+ + + +K+ E + + Sbjct: 8 RKITNALHSLSK------ATIINEEVLDSMLKE-ICTALLEADVNIRLVKKLRENVRSVI 60 Query: 73 --KRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 A ++ +R++ EL+ K++ P KP+ RP+VI+ VG+ G GKTT Sbjct: 61 DFDEMAGGLNKRRMIQSAVFKELV-KLVDPGVKPYQ-PIKGRPNVIMFVGLQGSGKTTTC 118 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+ K L DTFR+ A DQ+K A + F S D +A + + Sbjct: 119 TKLAYHYQKKNWKSCLVCADTFRAGAYDQIKQNATKARIPFYGSYTEVDPVTIAQDGVEM 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 + + + +I+DT+GR L +M+ V ++P +++ V+DAT GQ Q Sbjct: 179 FKKEGFEFIIVDTSGRHKQEESLFE---EMLAVANAVNPD---NIIFVMDATIGQACEAQ 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F +I+TK+DG A+GGG + V P+ F+G GE I+DLEPF K F + Sbjct: 233 AKAFKEKVDIGSVIITKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDLEPFKTKPFIS 292 Query: 309 VITGCLD 315 + G D Sbjct: 293 KLLGMGD 299 >gi|308235881|ref|ZP_07666618.1| signal recognition particle protein [Gardnerella vaginalis ATCC 14018] gi|311115023|ref|YP_003986244.1| signal recognition particle protein [Gardnerella vaginalis ATCC 14019] gi|310946517|gb|ADP39221.1| signal recognition particle protein [Gardnerella vaginalis ATCC 14019] Length = 566 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 85/281 (30%), Positives = 140/281 (49%), Gaps = 29/281 (10%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVS-ELIHKML 96 DG E+ L+ +D+ + V + ++ + ++VS Q+V+ V+ EL + + Sbjct: 30 DGTIREIRRALLDADVALDVVRSFTAKIRERALGEEVSSALNPAQQVVRIVNDELTNVLG 89 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 + +P N+ + P VI++ G+ G GKTT+ GKL + D+G +L A D R A+ Sbjct: 90 SGVDRPLNF-AKYPPTVIMLAGLQGAGKTTLAGKLGYWLKDSGHTPLLVAADLQRPNAVT 148 Query: 157 QLKIWADRTSADFVCSEIG----------------SDAAALAYEAFKQAQAKKVDVLIID 200 QL++ A+R E G D +A ++ A+AK D +IID Sbjct: 149 QLEVVAERAGVAIFAPERGVQSDGGSEVVSAGLATGDPVKVARDSIDYARAKMYDTVIID 208 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL + LM + R ++ D P +L V+DA GQ+A+R + F+ TG Sbjct: 209 TAGRLGVDDALM----QQAREIR--DAVNPQEILFVIDAMIGQDAVRTAQAFNEGVDFTG 262 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 ++++K+DG ARGG + + P+ F GEG+ D E F Sbjct: 263 VVLSKLDGDARGGAALSVASVTGKPILFASTGEGLKDFEIF 303 >gi|221487598|gb|EEE25830.1| signal recognition particle 54 kda protein, putative [Toxoplasma gondii GT1] Length = 714 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 127/250 (50%), Gaps = 10/250 (4%) Query: 59 GVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELIHKMLMPLSKPFNWDFSHRPHVILV 116 G ++ +E+ T+ A V+ ++++ +SE++ ML P +P+ +VI+ Sbjct: 121 GTGASKDSFQEINTRAAAVGVNSRKIIQKCVISEIV-AMLTPARQPY-VPRKGATNVIMF 178 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VG+ G GKTT K + G +V L DTFR+ A DQLK A + F S + Sbjct: 179 VGLQGSGKTTTCTKYAHYYQRKGWRVALVCADTFRAGAFDQLKQNATKVRIPFYGSYTEA 238 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D +A E +Q + +K D++I+DT+GR + L +M +V + +D P V+ V Sbjct: 239 DPVKIAEEGVEQFRREKYDMIIVDTSGRHKQEAAL---FDEMKQVAEAVD---PDDVVFV 292 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 +D+ GQ Q + F +I+TK+DG A+GGG + V P+ FLG GE + Sbjct: 293 MDSHIGQACFDQAQAFSESVDVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGEHFD 352 Query: 297 DLEPFVAKDF 306 D E F A F Sbjct: 353 DFEAFEANSF 362 >gi|26354843|dbj|BAC41048.1| unnamed protein product [Mus musculus] Length = 502 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P+VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 100 KPNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATQARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E ++ Q + +++I+DT+GR L +M++V + Sbjct: 160 YGSYTEMDPVIIASEGVEKFQNENFEIIIVDTSGRHQQEDSLFE---EMLQVSNAIQ--- 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 214 PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I++ EPF + F + + G D Sbjct: 274 GTGEHIDNFEPFKTQPFISKLLGMGD 299 >gi|197335050|ref|YP_002155306.1| signal recognition particle protein [Vibrio fischeri MJ11] gi|197316540|gb|ACH65987.1| signal recognition particle protein [Vibrio fischeri MJ11] Length = 457 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 101/308 (32%), Positives = 152/308 (49%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D ++E L ++ L+ +D+ + V + V+ + K A Sbjct: 2 FDNLTDRLSRTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVRDFVKRV--KEGA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E I + L ++ N P VIL+ G+ G GKTT G Sbjct: 60 VGVEVSKSLTPGQEFIKIVQAELEAVMGDSNEALNL-ACQPPAVILMAGLQGAGKTTSTG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+K + + K V++ + D +R AAI QL+ A DF S + A Sbjct: 119 KLAKLLKERDKKKVLVVSADVYRPAAIKQLETLATDVDVDFFPSSADQKPIDIVDAAISH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALR 247 A+ K DV+I+DTAGRL ++ +M I K+L H P L V+DA TGQ+A Sbjct: 179 AKLKFFDVVIVDTAGRLAVDTEMMDEI-------KQLHAHVNPIETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F TG+I+TK+DG ARGG + + PV FLGVGE + LEPF + + Sbjct: 232 TAKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPVKFLGVGEKTDALEPFHPERIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|93006809|ref|YP_581246.1| signal recognition particle protein [Psychrobacter cryohalolentis K5] gi|92394487|gb|ABE75762.1| signal recognition particle subunit FFH/SRP54 (srp54) [Psychrobacter cryohalolentis K5] Length = 515 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 95/309 (30%), Positives = 158/309 (51%), Gaps = 25/309 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I + +L +D +++ L ++ L+ +D+ + V + V KR Sbjct: 2 FDTLTERLSSSLRNIAGTGQLTEDNIKDTLREVRMALLEADVALPVTRDFV-----KRVK 56 Query: 77 KDVSVQRVLYDVS------ELIHKMLMPLSKPFNW--DFSHRPHVI-LVVGVNGVGKTTV 127 + VL +++ +++H L + N + + +P VI L+ G+ G GKTT Sbjct: 57 EQALGAEVLKELAPGQAFVKIVHDELTEMMGSANQQLEMTGKPPVIYLLAGLQGAGKTTT 116 Query: 128 IGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 GKL+K + + KVML + D +R AAI QL+ A + +A FV S + +A A Sbjct: 117 AGKLAKFLQERHKKKVMLVSADVYRPAAIAQLEQVAGQVNAKFVNSSSDENPIDIALRAI 176 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 ++A+ + D+LIIDTAGRL + +M I + + P L V+DA TGQ+A Sbjct: 177 EEAKIQYQDILIIDTAGRLAIDETMMDEIKALTAAVN------PSETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TG+I+TK DG ARGG + + P+ FLG GE ++ LE F + Sbjct: 231 NTAKAFNDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGRGEKLDALELFHPERI 290 Query: 307 SAVITGCLD 315 + I G D Sbjct: 291 AQRILGMGD 299 >gi|195941513|ref|ZP_03086895.1| signal recognition particle protein (ffh) [Borrelia burgdorferi 80a] Length = 444 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/276 (31%), Positives = 141/276 (51%), Gaps = 15/276 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF--- 103 E +++ L+ +D+ + V ++ + ++ + +K V V R + S+ I + L K Sbjct: 32 EIIKNSLVDADVNLRVIRRFLNSIIEE--SKGVKVLRGIDPKSQFIKIVNDNLVKFLGGK 89 Query: 104 NWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 N++ S P IL++G+ G GKTT KLS K+ KV+L A DTFR+AA++QLK Sbjct: 90 NYELSLHPTNKQSYILMLGLQGSGKTTTCAKLSLKLKKENRKVLLVAADTFRAAAVEQLK 149 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 I + E D + + K A++ D +I+DT GRL S+L+ I K+ Sbjct: 150 ILGGQVGVPVFSIEGEKDPIKIVKASMKFAESNFFDSVIVDTRGRLEIESLLVEEIKKIK 209 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 +L+ P + V+D+ GQ A+ + F+ G TG I +K D RGG ++ Sbjct: 210 GILQ------PAETILVVDSMMGQVAVNIAKEFNENVGLTGAIFSKFDSDTRGGAVLSFK 263 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P+ F+GVGE I DL+ F + ++ I G D Sbjct: 264 SICAVPIKFIGVGEKIEDLDSFYPERIASRILGMGD 299 >gi|199597126|ref|ZP_03210558.1| Signal recognition particle GTPase [Lactobacillus rhamnosus HN001] gi|258508639|ref|YP_003171390.1| signal recognition particle protein [Lactobacillus rhamnosus GG] gi|199591930|gb|EDZ00005.1| Signal recognition particle GTPase [Lactobacillus rhamnosus HN001] gi|257148566|emb|CAR87539.1| Signal recognition particle protein [Lactobacillus rhamnosus GG] gi|259649945|dbj|BAI42107.1| signal recognition particle protein [Lactobacillus rhamnosus GG] Length = 478 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 95/316 (30%), Positives = 155/316 (49%), Gaps = 22/316 (6%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A E LS +L K F+ K K +D+ + R E+ L+ +D+ V + Sbjct: 1 MAFEGLS--ERLQKAFSGLRRKGKVSESDVRDAMR-------EIRLALLEADVNFDVVKT 51 Query: 66 IVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 ++ + TK +V Q+++ V++ + K + + P N H P VI++ G+ Sbjct: 52 FIKNVRTKAVGSEVLESLTPAQQIIKIVNDELVKTMGEAAVPLNK-APHIPTVIMMAGLQ 110 Query: 121 GVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 G GKTT +GKLSK M + + +L A D +R AAIDQL+ + + +D Sbjct: 111 GAGKTTTVGKLSKYLMENEKARPLLIAADVYRPAAIDQLQTIGKQLNVPVFEMGTDTDPV 170 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 + + A+ K D ++IDTAGRL + LM + K I+ L P+ +L V+DA Sbjct: 171 EIVRQGLATAKENKNDYVLIDTAGRLQIDEKLMTEL-KNIKELAH-----PNDILLVVDA 224 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQ A+ + F+ TG+++TK+DG RGG + I P+ F+G GE ++ L+ Sbjct: 225 MTGQAAVDVAKGFNEQLDITGVVLTKLDGDTRGGAALSIRAVTGKPIKFIGQGEKMDALD 284 Query: 300 PFVAKDFSAVITGCLD 315 F + I G D Sbjct: 285 VFYPDRMANRILGMGD 300 >gi|146276232|ref|YP_001166391.1| signal recognition particle protein [Rhodobacter sphaeroides ATCC 17025] gi|145554473|gb|ABP69086.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rhodobacter sphaeroides ATCC 17025] Length = 501 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 139/269 (51%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA+ V+ + K + V+ Q+V+ V + + +L Sbjct: 38 LLEADVSLPVARDFVKRVQEKATGQGVTKSVTPGQQVVKIVHDELVTVLRGEGPADALKI 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P IL+VG+ G GKTT KL+K++S+ G +V++A+ DT R AA++QL+I + Sbjct: 98 DNPPATILMVGLQGSGKTTTTAKLAKRLSEKQGKRVLMASLDTNRPAAMEQLQILGAQIG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G A +A A Q DV+++DTAGRLH + +LM + + +R D Sbjct: 158 VDTLPIVKGETAVQIAKRAKTQGSMGGYDVIMLDTAGRLHIDEVLMDEV-QAVR-----D 211 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+D TGQ+A+ F G +G+++T+MDG RGG + + P+ Sbjct: 212 LAQPRETLLVVDGLTGQDAVNVAAEFDGKVGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ LE F + I G D Sbjct: 272 RFVGLGEKMDALETFEPDRIAGRILGMGD 300 >gi|284045135|ref|YP_003395475.1| signal recognition particle protein [Conexibacter woesei DSM 14684] gi|283949356|gb|ADB52100.1| signal recognition particle protein [Conexibacter woesei DSM 14684] Length = 444 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 93/305 (30%), Positives = 153/305 (50%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S + KL+ ++D+ S L +D V + ++ L+ +D+ V ++ + + Sbjct: 2 FDSLAEKLQATLSDVRSRGTLTEDDVNAAMREIRLALLEADVNFKVVKRFTNAVKERALG 61 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 DV Q+V+ V++ + +++ S + S P VIL+ G+ G GKTT KL Sbjct: 62 SDVIGQLNPGQQVVKIVNDELAELMGGESAELRFS-SSPPTVILMAGLQGSGKTTATAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 ++ + + V +AA D +R AA++QL R AD +D +A A ++A+ Sbjct: 121 ARLLREQNRSSVAVAACDVYRPAAVEQLITVGARAGADVYERGTDADPVEIAKWARERAE 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + DVLI+DTAGRLH + LM + ++ RV P +VL V+DA TGQ+A+ E Sbjct: 181 REGKDVLIVDTAGRLHVDENLMKELAEIKRVTN------PTNVLLVVDAMTGQDAVNVAE 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F V G++M+K+DG ARGG + + P+ F GE ++ E F + I Sbjct: 235 QFAEVVQFDGVVMSKLDGDARGGAALSVKSVTGKPILFASTGEKLDQFERFHPDRMAQRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|297852530|ref|XP_002894146.1| signal recognition particle 54 kDa protein 3 [Arabidopsis lyrata subsp. lyrata] gi|297852532|ref|XP_002894147.1| signal recognition particle 54 kDa protein 3 [Arabidopsis lyrata subsp. lyrata] gi|297339988|gb|EFH70405.1| signal recognition particle 54 kDa protein 3 [Arabidopsis lyrata subsp. lyrata] gi|297339989|gb|EFH70406.1| signal recognition particle 54 kDa protein 3 [Arabidopsis lyrata subsp. lyrata] Length = 496 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 91/290 (31%), Positives = 141/290 (48%), Gaps = 19/290 (6%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQ-------KIVE-ELLTKRYAKDVSVQRVLY 86 II + L++ + E + L++SD+ + + KIV E L + K +++ ++ Sbjct: 22 IIDEKALNECLNE-ITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIF 80 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 SEL KML P KP + V++ VG+ G GKTT K + G K L Sbjct: 81 --SELC-KMLDP-GKPAFAPKKAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVC 136 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 DTFR+ A DQLK A + F S SD +A E + + D++I+DT+GR Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHK 196 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + L + ++ K P V+ V+D++ GQ A Q + F +I+TKM Sbjct: 197 QEATLFEEMRQVAEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKM 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316 DG A+GGG + V K PV F+G GE +++ E F K F + + G D+ Sbjct: 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300 >gi|238765364|ref|ZP_04626288.1| Signal recognition particle protein [Yersinia kristensenii ATCC 33638] gi|238696406|gb|EEP89199.1| Signal recognition particle protein [Yersinia kristensenii ATCC 33638] Length = 453 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 116/212 (54%), Gaps = 13/212 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT + KL K + + K V++ + D +R AAI QL+ A+ Sbjct: 97 AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAEGVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S++ + +A +QA+ K DVLI+DTAGRLH + +M I ++ Sbjct: 157 IDFFPSDVQEKPIDIVNQALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQV-------- 208 Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 HA P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ FLGVGE + LEPF ++ I G D Sbjct: 268 KPIKFLGVGEKSDALEPFHPDRVASRILGMGD 299 >gi|269797639|ref|YP_003311539.1| signal recognition particle protein [Veillonella parvula DSM 2008] gi|269094268|gb|ACZ24259.1| signal recognition particle protein [Veillonella parvula DSM 2008] Length = 450 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 96/317 (30%), Positives = 157/317 (49%), Gaps = 34/317 (10%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+E + ++ +D V L + L+ +D+ VA+ V+ + K Sbjct: 3 FDSLSEKLQEAFQSLKGKGKITEDDVNLALRQVRTALLEADVNFMVAKDFVKSIKEKALG 62 Query: 77 KDV-----SVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVGK 124 ++V Q V+ V++ + +L M SKP P +I++VG+ G GK Sbjct: 63 EEVFGSLNPAQTVIKIVNDELTALLGGTQSRIMISSKP--------PTIIMLVGLQGAGK 114 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAY 183 TT GKL+ + G + ML A D +R AAI QL++ + E G++ +A Sbjct: 115 TTTAGKLAVYLRKQGKRPMLVAADVYRPAAITQLQVVGKQIDIPVFSDETPGANPVDIAR 174 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 A +Q+ DV+IIDTAGRL + +LM + + ++ PH +L V+D+ GQ Sbjct: 175 RAVEQSTHMLKDVVIIDTAGRLAIDEVLMDELSNIKAAVR------PHEILLVVDSMIGQ 228 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 +A+ + F+ G G+I+TK+DG ARGG + I +P+ F GV E ++ + F Sbjct: 229 DAVTTAQTFNEKLGVDGVILTKLDGDARGGAALSIKAVTGLPIKFTGVSEKMDGFDVFYP 288 Query: 304 KDFSAVITGCLDYGEEK 320 ++ I LD G+ K Sbjct: 289 DRMASRI---LDLGDFK 302 >gi|317177900|dbj|BAJ55689.1| signal recognition particle protein [Helicobacter pylori F16] Length = 448 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ VA+++++++ ++ + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L L +L LS + F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVL+ Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + ++ VL PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I +P+ F+G GE I DL+ FV + + G D Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291 >gi|219849542|ref|YP_002463975.1| signal recognition particle protein [Chloroflexus aggregans DSM 9485] gi|219543801|gb|ACL25539.1| signal recognition particle protein [Chloroflexus aggregans DSM 9485] Length = 450 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 89/284 (31%), Positives = 144/284 (50%), Gaps = 17/284 (5%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLM 97 +D VRE ++ + L+ +D+ V + V ++ K ++V+ + V +++H+ L+ Sbjct: 24 EDDVREAMKQVRLALLEADVNFRVVKDFVAKVTEKAIGEEVTKSLTPHQQVIKIVHQELI 83 Query: 98 PLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 L + P VI++VG+ G GKTT+ KL+ + G +V+L A D +R AA Sbjct: 84 NLLGTEHVPLQEARPGPTVIMLVGLQGTGKTTLAAKLALHLRKKGKRVLLVAADVYRPAA 143 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 I QL+ + + + +A A + A+ + +V+IIDTAGRL + LM Sbjct: 144 ITQLQALGRQLNIPVYSEGTQASPPDIAEHALEHARKELFNVVIIDTAGRLQIDEPLMQE 203 Query: 215 IGKM-IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + ++ RV P L V+DA TGQ A+R E F+ TG++MTKMDG ARGG Sbjct: 204 LEQIEARV-------HPTERLLVVDAMTGQEAVRVAETFNQRVKLTGVVMTKMDGDARGG 256 Query: 274 GLIPIVVTHKIPVYFLGVGEGI--NDLEPFVAKDFSAVITGCLD 315 + + +P+ FL GE + N LE F ++ I G D Sbjct: 257 AALSVRAVTGVPIKFLSTGEKVDGNTLEIFHPDRLASRILGMGD 300 >gi|217034229|ref|ZP_03439647.1| hypothetical protein HP9810_2g8 [Helicobacter pylori 98-10] gi|216943289|gb|EEC22751.1| hypothetical protein HP9810_2g8 [Helicobacter pylori 98-10] Length = 448 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ VA+++++++ ++ + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L L +L LS + F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVL+ Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + ++ VL PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I +P+ F+G GE I DL+ FV + + G D Sbjct: 235 SGVVLSKFDSDSKGGIALGIAYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291 >gi|315587040|gb|ADU41421.1| signal recognition particle protein [Helicobacter pylori 35A] gi|332673948|gb|AEE70765.1| signal recognition particle protein [Helicobacter pylori 83] Length = 448 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ VA+++++++ ++ + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L L +L LS + F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVL+ Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + ++ VL PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I +P+ F+G GE I DL+ FV + + G D Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291 >gi|298500684|ref|ZP_07010487.1| signal recognition particle protein [Vibrio cholerae MAK 757] gi|297540465|gb|EFH76523.1| signal recognition particle protein [Vibrio cholerae MAK 757] Length = 461 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 96/307 (31%), Positives = 152/307 (49%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E I + L ++ N + P VIL+ G+ G GKTT +G Sbjct: 60 VGVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KLSK + + K V++ + D +R AAI QL+ A+ DF S +A A Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K D ++DTAGRL + +MA I + + + P L V+DA TGQ+A Sbjct: 179 AKKKFYDAQLVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+I+TK+DG ARGG + + P+ F+GVGE + LEPF ++ Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|257457465|ref|ZP_05622633.1| signal recognition particle protein [Treponema vincentii ATCC 35580] gi|257445088|gb|EEV20163.1| signal recognition particle protein [Treponema vincentii ATCC 35580] Length = 442 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 146/308 (47%), Gaps = 15/308 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----E 68 + K+T F+ K+ T I+ + +++ V EE++ L+ +D+ + V ++ + E Sbjct: 1 MLEKITNTFSGIVRKISGKAT--ITEKNIEEAV-EEIKIALLEADVNLRVVRRFINATIE 57 Query: 69 ELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 E + K V+ Q+ + V + I L K VIL +G+ G GKTT Sbjct: 58 EAKGEAVLKSVNPGQQFVKIVHDKILSFLGDEKKSLQLKGPDTQSVILFLGLQGSGKTTS 117 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 KL+ ++ G K +L A D R AA++QL +R V E DA +A A Sbjct: 118 AAKLAARLKKEGRKPLLVACDLVRPAAVEQLFSLGERIDVP-VYKEDTKDAVRVAQNAVT 176 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ D +I+DTAGRL + +M I + + + P L V DA TGQNA Sbjct: 177 FARKNGFDTVIVDTAGRLQIDEAMMKEIAAVKKAVN------PVETLLVADAMTGQNAAE 230 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F AG TG+I+TK D ARGG + + P+ ++GVGE I D EPF + Sbjct: 231 VAKAFDEQAGLTGVILTKFDSDARGGAALSLKTVTGKPILYVGVGEKIEDFEPFYPDRIA 290 Query: 308 AVITGCLD 315 I G D Sbjct: 291 GRILGMGD 298 >gi|34499288|ref|NP_903503.1| signal recognition particle protein [Chromobacterium violaceum ATCC 12472] gi|34105139|gb|AAQ61495.1| signal recognition particle protein [Chromobacterium violaceum ATCC 12472] Length = 451 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 85/289 (29%), Positives = 150/289 (51%), Gaps = 20/289 (6%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 ++ + D +RE + L+ +D+ + V + + ++ + +DV Q ++ V+E Sbjct: 22 LTESNIQDAMRE-VRMALLEADVALPVVKTFIAQVKERALGQDVMGSLTPGQALVGVVNE 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDT 149 + K++ + N + P ++L+ G+ G GKTT +GKL+K++ + KV++ + D Sbjct: 81 ELVKLMGDKNDELNL-AAVPPAIVLMAGLQGAGKTTTVGKLAKRLKETQKKKVLVVSADV 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI+QLK+ A + ++ S+ +A A A+ DVL++DTAGRL + Sbjct: 140 YRPAAIEQLKLLASQVGVEWFPSDEKQKPVDIARAAIDHARRHFFDVLLVDTAGRLAIDE 199 Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 +M I + HA P L V+DA GQ+A+ + F+ TG+I+TKM Sbjct: 200 AMMEEIKAL---------HAAINPVETLFVVDAMQGQDAVNTAKAFNEALPLTGVILTKM 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG +RGG + + P+ F+GVGE + +EPF ++ I G D Sbjct: 251 DGDSRGGAALSVRHVTGKPIKFIGVGEKVAAIEPFHPDRIASRILGMGD 299 >gi|315452863|ref|YP_004073133.1| signal recognition particle protein [Helicobacter felis ATCC 49179] gi|315131915|emb|CBY82543.1| signal recognition particle protein [Helicobacter felis ATCC 49179] Length = 443 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 84/270 (31%), Positives = 144/270 (53%), Gaps = 9/270 (3%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 +EL+ L+R+D+ VA+++V+ + K AK + Q+ L + E + ++L + Sbjct: 30 DELKKALLRNDVHHKVAKELVKNIEAKTKAKGIGKQQFLDSLQESLLEILSVPGASSGFV 89 Query: 107 FSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 ++ P ++L+ G+ G GKTT KL+ + KV+L A D R AAI+QL++ ++ Sbjct: 90 YAPTPPTIVLMCGLQGGGKTTTCAKLANYLKTRHKKVLLVACDLERLAAIEQLQVLGEQI 149 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + E +A A K+AQ + DV+I+D+AGRL + LM + ++ LK L Sbjct: 150 GIEVYHQE--GSVLDIAKGALKRAQEGQFDVVIVDSAGRLAIDKPLM----EELKALKNL 203 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P V DA +GQ+ +R + FH G +G++++K D ++GG + I +IP Sbjct: 204 --LNPLETFYVADALSGQDGVRSAQTFHTEIGLSGVVLSKFDSDSKGGVALGIAHQLQIP 261 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F+G GE I DL+ FV + + G D Sbjct: 262 LRFIGHGEKIPDLDVFVPDRIAQRLMGAGD 291 >gi|324502545|gb|ADY41120.1| Signal recognition particle 54 kDa protein [Ascaris suum] Length = 503 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 122/235 (51%), Gaps = 10/235 (4%) Query: 81 VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140 +QR ++ +EL+ K++ P KP+ +P+V + VG+ G GKTT KL+ G Sbjct: 75 IQRCVF--TELM-KLVDPGVKPYQPT-KGKPNVFMFVGLQGSGKTTTCTKLAYYYQKKGW 130 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 K L DTFR+ A DQLK A + + S I D +A + + + +++I+D Sbjct: 131 KTCLICADTFRAGAFDQLKQNATKARIPYYGSYIEMDPVVIATNGVDKFKGEGFEIIIVD 190 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 T+GR + L +M++V + +P++V+ V+DA+ GQ Q F Sbjct: 191 TSGRHKQEASLFE---EMLQVSNAI---SPNNVVFVMDASIGQACEAQARAFSTTVDVGS 244 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+D A+GGG + V + P+ F+G GE I+D EPF K F + G D Sbjct: 245 VIITKLDSHAKGGGALSAVAATRSPIIFIGTGEHIDDFEPFEVKPFVQKLLGMGD 299 >gi|308183255|ref|YP_003927382.1| signal recognition particle protein [Helicobacter pylori PeCan4] gi|308065440|gb|ADO07332.1| signal recognition particle protein [Helicobacter pylori PeCan4] Length = 448 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ VA+++++++ ++ + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L L +L LS + F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVL+ Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFHEENKSVKEIANNALKRAKEAQFDVLL 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + ++ VL PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I +P+ F+G GE I DL+ FV + + G D Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291 >gi|515681|gb|AAA66200.1| signal recognition particle 54 kDa subunit [Arabidopsis thaliana] Length = 495 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 91/290 (31%), Positives = 141/290 (48%), Gaps = 19/290 (6%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQ-------KIVE-ELLTKRYAKDVSVQRVLY 86 II + L++ + E + L++SD+ + + KIV E L + K +++ ++ Sbjct: 22 IIDEKALNECLNE-ITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIF 80 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 SEL KML P KP + V++ VG+ G GKTT K + G K L Sbjct: 81 --SELC-KMLDP-GKPAFAPKKRKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVC 136 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 DTFR+ A DQLK A + F S SD +A E + + D++I+DT+GR Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHK 196 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + L + ++ K P V+ V+D++ GQ A Q + F +I+TKM Sbjct: 197 QEASLFEEMRQVAEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKM 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316 DG A+GGG + V K PV F+G GE +++ E F K F + + G D+ Sbjct: 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300 >gi|261838478|gb|ACX98244.1| signal recognition particle protein [Helicobacter pylori 51] Length = 448 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ VA+++++++ ++ + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L L +L LS + F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---DALEKSLLEILSTKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVL+ Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + ++ VL PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I +P+ F+G GE I DL+ FV + + G D Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291 >gi|126734928|ref|ZP_01750674.1| signal recognition particle protein [Roseobacter sp. CCS2] gi|126715483|gb|EBA12348.1| signal recognition particle protein [Roseobacter sp. CCS2] Length = 501 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/283 (30%), Positives = 144/283 (50%), Gaps = 15/283 (5%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 DD V+ L ++ L+ +D+ + VA+ ++ + K + V+ Q+V+ V + + Sbjct: 24 DDDVKTALREVRVALLEADVSLPVARDFIKAVQEKATGQAVTKSITPGQQVVKIVHDELQ 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRS 152 +L P + P IL+VG+ G GKTT KL+K++ + G +V++A+ DT R Sbjct: 84 HVLTGDEDPGALKIDNPPAPILMVGLQGSGKTTTTAKLAKRLKEKEGKRVLMASLDTNRP 143 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AA++QL I + D + G D +A A QA DV ++DTAGRLH + L+ Sbjct: 144 AAMEQLAILGGQIGVDTLPIVQGEDPVKIAKRAKTQASLGGYDVYMLDTAGRLHIDQELI 203 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 A + D P L V+D TGQ+A+ + F G +G+++T+MDG RG Sbjct: 204 AQAAAV------RDVANPRETLLVVDGLTGQDAVNVAQEFDDKIGVSGVVLTRMDGDGRG 257 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + + P+ F+G+GE ++ +E F + + I G D Sbjct: 258 GAALSMRAITGKPIRFVGLGEKMDAIETFEPERIAGRILGMGD 300 >gi|288931995|ref|YP_003436055.1| GTP-binding signal recognition particle SRP54 G- domain protein [Ferroglobus placidus DSM 10642] gi|288894243|gb|ADC65780.1| GTP-binding signal recognition particle SRP54 G- domain protein [Ferroglobus placidus DSM 10642] Length = 431 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 75/211 (35%), Positives = 108/211 (51%), Gaps = 8/211 (3%) Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 +D + I++VG+ G GKTT K++K D G+K + AGDT R AA +QLK A++ Sbjct: 86 FDIPLKKSKIMLVGLQGSGKTTTAAKIAKYFKDKGMKAAVIAGDTHRPAAYEQLKQLAEQ 145 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 F + DA + E + K DV++IDTAGR L+ + ++ V K Sbjct: 146 AGLGFFGKKEEKDAVKIVKEGLEAL--KDYDVIVIDTAGRHALEEELIEEMKRIAEVSK- 202 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P VLDA+ GQ A +Q E F+ G +++TK DGTA+GGG + I Sbjct: 203 -----PDYKFLVLDASIGQLASKQAEAFNEAVGIDAIVITKFDGTAKGGGALSAARLIGI 257 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE I D E F F + + G D Sbjct: 258 PIAFIGTGEKIEDFEKFDPAGFVSRLLGMGD 288 >gi|85708915|ref|ZP_01039981.1| signal recognition particle GTPase [Erythrobacter sp. NAP1] gi|85690449|gb|EAQ30452.1| signal recognition particle GTPase [Erythrobacter sp. NAP1] Length = 493 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 89/291 (30%), Positives = 152/291 (52%), Gaps = 19/291 (6%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87 +S + + D +RE + L+ +D+ + VA++ ++ + K ++V V ++++D Sbjct: 22 LSEQDVRDAMRE-VRVALLEADVALPVAKRFIDSVTEKAIGQEVLKAVKPGQQVVKIVHD 80 Query: 88 --VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVML 144 V+ L + ++ N D + P VI++VG+ G GKTT KL K + + G K M+ Sbjct: 81 ELVAMLSGEEGEGATEGLNLD-AKPPVVIMMVGLQGSGKTTTTAKLGKLIRERHGKKAMM 139 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 A+ D R AA +QL + ++T + G +A A + A+ + DVL++DTAGR Sbjct: 140 ASLDVNRPAAQEQLAVLGEQTQVATLPVIAGQQPVDIARRAMESARLQNFDVLLLDTAGR 199 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 LH + LMA + + +V AP VL V+D+ TGQ+A+ + F TG+++T Sbjct: 200 LHVDEALMAEMKAVSQV------SAPTEVLLVVDSLTGQDAVNVAQSFSGEVPLTGVVLT 253 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +MDG ARGG + + P+ F G GE ++ +E F + I G D Sbjct: 254 RMDGDARGGAALSMRAVTGKPIKFAGTGEKLDAIETFRPGSVADRILGMGD 304 >gi|78212426|ref|YP_381205.1| signal recognition particle subunit FFH/SRP54 (srp54) [Synechococcus sp. CC9605] gi|78196885|gb|ABB34650.1| signal recognition particle protein [Synechococcus sp. CC9605] Length = 492 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 85/285 (29%), Positives = 144/285 (50%), Gaps = 26/285 (9%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLM--- 97 DG +++ L+ +D+ + V ++ V ++ K +V V+ V D +++H+ L+ Sbjct: 28 DGALKDVRRALLEADVSLPVVKEFVADVRDKAVGAEV-VRGVSPDQKFIQVVHEQLVEVM 86 Query: 98 -----PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 PL+K + P V+L+ G+ G GKTT KL + D G + ++ D +R Sbjct: 87 GGDNAPLAKAADA-----PTVVLMAGLQGAGKTTATAKLGLHLKDQGRRALMVGADVYRP 141 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 AAI+QLK D +G++A +A +A+ + D L++DTAGRL ++ Sbjct: 142 AAIEQLKTLG--AQIDVEVFSLGAEAKPEDIAAAGLAKAKEEGFDTLLVDTAGRLQIDTE 199 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 +M +M+R+ + P VL V+D+ GQ A FH G TG ++TK+DG + Sbjct: 200 MME---EMVRIRTAVQPD---EVLLVVDSMIGQEAAELTRAFHDQVGITGAVLTKLDGDS 253 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I P+ F+G GE + L+PF + ++ I G D Sbjct: 254 RGGAALSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRILGMGD 298 >gi|86137223|ref|ZP_01055801.1| signal recognition particle protein [Roseobacter sp. MED193] gi|85826547|gb|EAQ46744.1| signal recognition particle protein [Roseobacter sp. MED193] Length = 509 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 141/269 (52%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVA----QKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA +K+ E+ + K V+ Q+V+ V + + ++L Sbjct: 38 LLEADVSLPVARDFVKKVQEQATGQSVTKSVTPGQQVVKIVHDALVEVLRGNEDLGTLKV 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P IL+VG+ G GKTT GKL+K++ D G +V++A+ D +R AA+DQL + + Sbjct: 98 DNPPAPILMVGLQGSGKTTTTGKLAKRLKDKEGKRVLMASLDVYRPAAMDQLAVLGAQIG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G +A A +QA DV ++DTAGRL + +LM + + V+ Sbjct: 158 VDTLPIVAGQKPVDIAKRAKQQAALGGYDVYMLDTAGRLQIDEVLMQEVEDVRDVV---- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 +P L V+D TGQ A+ E F A G +G+++T+MDG RGG + + P+ Sbjct: 214 --SPRETLLVVDGLTGQVAVEVAEEFDAKIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ +E F + + I G D Sbjct: 272 RFVGLGEKMDAIETFEPERVAGRILGMGD 300 >gi|307637821|gb|ADN80271.1| Signal recognition particle [Helicobacter pylori 908] Length = 448 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ VA+++++++ ++ + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLSGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L L +L LS + F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVL+ Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFHEENKSVKEIANNALKRAKEAQFDVLL 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + ++ VL PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I +P+ F+G GE I DL+ FV + + G D Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291 >gi|125996652|gb|ABN60727.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella baltica OS155] Length = 478 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 157/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL ++ V+E L ++ L+ +D+ + V ++ V + + Sbjct: 23 FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 82 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++VS Q + V + K + ++ + + P VI++ G+ G GKTT + KL Sbjct: 83 QEVSKSLSPGQAFIKIVQSELEKSMGEANEALDL-ATQPPAVIMMAGLQGAGKTTSVAKL 141 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + K V++ + D +R AAI QL+ A + +F S++ +A A A+ Sbjct: 142 GKFLRERHKKSVLVVSADVYRPAAIKQLETLAQEVAVEFFPSDVSQKPIDIAKAAIAHAK 201 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K +DV+I+DTAGRLH + +M I + +K P L V+DA TGQ+A + Sbjct: 202 LKFIDVVILDTAGRLHVDEAMMDEIKGLHAAVK------PIETLFVVDAMTGQDAANTAK 255 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 256 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 315 Query: 311 TGCLD 315 G D Sbjct: 316 LGMGD 320 >gi|242091039|ref|XP_002441352.1| hypothetical protein SORBIDRAFT_09g025050 [Sorghum bicolor] gi|241946637|gb|EES19782.1| hypothetical protein SORBIDRAFT_09g025050 [Sorghum bicolor] Length = 482 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 111/228 (48%), Gaps = 7/228 (3%) Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 V + I +ML P KP +P++++ VG+ G GKTT K + G L Sbjct: 79 VVDEIRRMLDP-GKPSFTPSKGKPNLVMFVGLQGSGKTTTCTKYADYHRRKGFNPALVCA 137 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DTFR+ A DQLK A + F S SD +A E + +K D++I+DT+GR Sbjct: 138 DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDMFRKEKCDLIIVDTSGRHKQ 197 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + L + ++ K P V+ V+D + GQ A Q + F A +I+TKMD Sbjct: 198 EAALFEEMRQVSEATK------PDLVIFVMDGSIGQAAFDQAQAFKQSASVGAVIVTKMD 251 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G A+GGG + V K PV F+G GE I D E F F + + G D Sbjct: 252 GHAKGGGALSAVAATKSPVIFIGTGEHILDFEVFEVNPFVSRLLGMGD 299 >gi|317180883|dbj|BAJ58669.1| signal recognition particle protein [Helicobacter pylori F32] Length = 448 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ VA+++++++ ++ + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L L +L LS + F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVL+ Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + ++ VL PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I +P+ F+G GE I DL+ FV + + G D Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291 >gi|259046590|ref|ZP_05736991.1| signal recognition particle protein [Granulicatella adiacens ATCC 49175] gi|259036755|gb|EEW38010.1| signal recognition particle protein [Granulicatella adiacens ATCC 49175] Length = 478 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 84/271 (30%), Positives = 142/271 (52%), Gaps = 17/271 (6%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + V ++ + +V Q+V+ V+E + +++ PF ++ Sbjct: 39 LLEADVNFKVVKDFVRKVNERALGANVLEALSPAQQVVKIVNEELTELMGGEQAPFRFE- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+++VG+ G GKTT GKL+ M+ K +L A D +R AAIDQL+ + Sbjct: 98 AKPPTVVMMVGLQGAGKTTTAGKLASFMAKHEKKRPLLVAADVYRPAAIDQLQTLGKQL- 156 Query: 167 ADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 +F +G+ + +A +A ++A+ D++IIDTAGRLH + LM + + V Sbjct: 157 -NFPVFSLGNQVSPVEIAKQAIEKAKIDGRDLVIIDTAGRLHIDETLMEELQNIKAVAN- 214 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P +L V+D+ TGQ+A+ + F+ TG+I+TK+DG RGG + I Sbjct: 215 -----PSEILLVVDSMTGQDAVNVAQTFNERLDITGVILTKLDGDTRGGAALSIRSVTGK 269 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F G GE + D E F + ++ I G D Sbjct: 270 PIKFTGRGEKLEDFEIFYPERMASRILGMGD 300 >gi|145324887|ref|NP_001077690.1| signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) [Arabidopsis thaliana] gi|332194243|gb|AEE32364.1| signal recognition particle subunit SRP54 [Arabidopsis thaliana] Length = 431 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 91/290 (31%), Positives = 141/290 (48%), Gaps = 19/290 (6%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQ-------KIVE-ELLTKRYAKDVSVQRVLY 86 II + L++ + E + L++SD+ + + KIV E L + K +++ ++ Sbjct: 22 IIDEKALNECLNE-ITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIF 80 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 SEL KML P KP + V++ VG+ G GKTT K + G K L Sbjct: 81 --SELC-KMLDP-GKPAFAPKKAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVC 136 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 DTFR+ A DQLK A + F S SD +A E + + D++I+DT+GR Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHK 196 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + L + ++ K P V+ V+D++ GQ A Q + F +I+TKM Sbjct: 197 QEASLFEEMRQVAEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKM 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316 DG A+GGG + V K PV F+G GE +++ E F K F + + G D+ Sbjct: 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300 >gi|317009762|gb|ADU80342.1| signal recognition particle protein [Helicobacter pylori India7] Length = 448 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 83/295 (28%), Positives = 155/295 (52%), Gaps = 15/295 (5%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ VA+++++++ ++ + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGL 140 Q+ L + + + ++L + + F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFLDALEKSLLEIL-SVKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNK 123 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVL++D Sbjct: 124 KVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIASNALKRAKEAQFDVLLVD 182 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 +AGRL + LM + ++ VL PH VL V DA +GQ+ ++ F+ G +G Sbjct: 183 SAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGVSG 236 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ++++K D ++GG + I +P+ F+G GE I DL+ FV + + G D Sbjct: 237 VVLSKFDSDSKGGIALGIAYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291 >gi|282850086|ref|ZP_06259468.1| signal recognition particle protein [Veillonella parvula ATCC 17745] gi|294795144|ref|ZP_06760278.1| signal recognition particle protein [Veillonella sp. 3_1_44] gi|282580275|gb|EFB85676.1| signal recognition particle protein [Veillonella parvula ATCC 17745] gi|294453936|gb|EFG22311.1| signal recognition particle protein [Veillonella sp. 3_1_44] Length = 450 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 96/317 (30%), Positives = 157/317 (49%), Gaps = 34/317 (10%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+E + ++ +D V L + L+ +D+ VA+ V+ + K Sbjct: 3 FDSLSEKLQEAFQSLKGKGKITEDDVNLALRQVRTALLEADVNFMVAKDFVKSIKEKALG 62 Query: 77 KDV-----SVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVGK 124 ++V Q V+ V++ + +L M SKP P +I++VG+ G GK Sbjct: 63 EEVFGSLNPAQTVIKIVNDELTALLGGTQSRIMISSKP--------PTIIMLVGLQGAGK 114 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAY 183 TT GKL+ + G + ML A D +R AAI QL++ + E G++ +A Sbjct: 115 TTTAGKLAVYLRKQGKRPMLVAADVYRPAAITQLQVVGKQIDIPVFSDETPGANPVDIAR 174 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 A +Q+ DV+IIDTAGRL + +LM + + ++ PH +L V+D+ GQ Sbjct: 175 RAVEQSTHMLKDVVIIDTAGRLAIDEVLMDELSNIKAAVR------PHEILLVVDSMIGQ 228 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 +A+ + F+ G G+I+TK+DG ARGG + I +P+ F GV E ++ + F Sbjct: 229 DAVTTAQTFNEKLGVDGVILTKLDGDARGGAALSIKAVTGLPIKFTGVSEKMDGFDVFYP 288 Query: 304 KDFSAVITGCLDYGEEK 320 ++ I LD G+ K Sbjct: 289 DRMASRI---LDLGDFK 302 >gi|229552446|ref|ZP_04441171.1| Sec family type I general secretory pathway protein signal recognition particle protein [Lactobacillus rhamnosus LMS2-1] gi|258539816|ref|YP_003174315.1| signal recognition particle protein [Lactobacillus rhamnosus Lc 705] gi|229314183|gb|EEN80156.1| Sec family type I general secretory pathway protein signal recognition particle protein [Lactobacillus rhamnosus LMS2-1] gi|257151492|emb|CAR90464.1| Signal recognition particle protein [Lactobacillus rhamnosus Lc 705] Length = 478 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 95/316 (30%), Positives = 155/316 (49%), Gaps = 22/316 (6%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A E LS +L K F+ K K +D+ + R E+ L+ +D+ V + Sbjct: 1 MAFEGLS--ERLQKAFSGLRRKGKVSESDVRDAMR-------EIRLALLEADVNFDVVKT 51 Query: 66 IVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 ++ + TK +V Q+++ V++ + K + + P N H P VI++ G+ Sbjct: 52 FIKNVRTKAVGSEVLESLTPAQQIIKIVNDELVKTMGEAAVPLNK-APHIPTVIMMAGLQ 110 Query: 121 GVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 G GKTT +GKLSK M + + +L A D +R AAIDQL+ + + +D Sbjct: 111 GAGKTTTVGKLSKYLMENEKARPLLIAADVYRPAAIDQLQTIGKQLNVPVFEMGTDTDPV 170 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 + + A+ K D ++IDTAGRL + LM + K I+ L P+ +L V+DA Sbjct: 171 EIVRQGLATAKENKNDYVLIDTAGRLQIDEKLMTEL-KNIKELAH-----PNDILLVVDA 224 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQ A+ + F+ TG+++TK+DG RGG + I P+ F+G GE ++ L+ Sbjct: 225 MTGQAAVDVAKGFNEQLDITGVVLTKLDGDTRGGAALSIRAVTGKPIKFIGQGEKMDALD 284 Query: 300 PFVAKDFSAVITGCLD 315 F + I G D Sbjct: 285 VFYPDRMANRILGMGD 300 >gi|126283547|ref|XP_001363021.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 504 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P+VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 100 KPNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E ++ + + +++I+DT+GR L +M++V + P Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D EPF + F + + G D Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299 >gi|33862622|ref|NP_894182.1| signal recognition particle protein (SRP54) [Prochlorococcus marinus str. MIT 9313] gi|33634538|emb|CAE20524.1| signal recognition particle protein (SRP54) [Prochlorococcus marinus str. MIT 9313] Length = 497 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 120/231 (51%), Gaps = 13/231 (5%) Query: 90 ELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 +++H+ L+ + N + P V+L+ G+ G GKTT KL + D G + ++ A Sbjct: 76 QVVHQQLVEVMGGDNAPMAEAEDSPTVVLMAGLQGAGKTTATAKLGLHLKDQGQRPLMVA 135 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGR 204 D +R AAIDQL+ ++ D +G D +A +A+ + D L++DTAGR Sbjct: 136 ADVYRPAAIDQLRTLGEQIGVDVFS--LGDDVKPEEIAAAGLAKAREEGFDTLLVDTAGR 193 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 L ++ +M +M+R+ ++P VL V+D+ GQ A FH G TG ++T Sbjct: 194 LQIDTEMME---EMVRIRSAVEPD---EVLLVVDSMIGQEAAELTRAFHDKVGITGSVLT 247 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 K+DG +RGG + I P+ F+G GE + L+PF + ++ I G D Sbjct: 248 KLDGDSRGGAALSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRILGMGD 298 >gi|15604048|ref|NP_220563.1| signal recognition particle protein [Rickettsia prowazekii str. Madrid E] gi|6226156|sp|Q9ZDZ0|SRP54_RICPR RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog gi|3860739|emb|CAA14640.1| SIGNAL RECOGNITION PARTICLE PROTEIN (ffh) [Rickettsia prowazekii] gi|292571768|gb|ADE29683.1| Signal recognition particle protein [Rickettsia prowazekii Rp22] Length = 449 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/290 (29%), Positives = 154/290 (53%), Gaps = 16/290 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89 I++ ++D +R+ + L+ SD+ + V + +EE+ K ++V SV Q ++ + Sbjct: 21 ILTENQIDTAMRD-VRVALLESDVALPVIKGFIEEVKQKALGQEVIKSVSPGQMIIKIIH 79 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 E + +L + + +P V +L+VG+ G GKTT GKL+ ++ + KV+L + D Sbjct: 80 EEMINLLASTESTTKLNLNAKPPVNLLIVGLQGGGKTTASGKLALRLKNQNKKVLLVSLD 139 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 T+R AA +QL I A+ + D + G + A +AQ DV+I DTAGR+ + Sbjct: 140 TYRPAAQEQLAIIANSVNIDSLPIVKGEKPLDIVKRAIGEAQISAYDVVIYDTAGRIQID 199 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 +++M + ++L P L V+D+ TGQ+A+ + F +GLI++++DG Sbjct: 200 NVMMEEALAIKKILN------PTETLLVIDSMTGQDAVITAKTFSEKLEISGLILSRIDG 253 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 +GG + + + P+ FL GE + DLE F A+ ++ I LD G+ Sbjct: 254 DTKGGAALSVKYFTQKPIKFLSSGEKLTDLEEFNAERLASRI---LDMGD 300 >gi|330504640|ref|YP_004381509.1| signal recognition particle subunit FFH/SRP54 (SRP54) [Pseudomonas mendocina NK-01] gi|328918926|gb|AEB59757.1| signal recognition particle subunit FFH/SRP54 (SRP54) [Pseudomonas mendocina NK-01] Length = 459 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 90/304 (29%), Positives = 156/304 (51%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + ++ +L +D +++ L ++ L+ +D+ + V + V ++ + Sbjct: 2 FENLTDRLSQTLRNVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVGKVKERAVG 61 Query: 77 KDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLS 132 +VS +++ L L N D + P V+L+ G+ G GKTT GKL+ Sbjct: 62 TEVSKSLTPGQAFVKIVRAELEELMGAANEDLALNAAPPAVVLMAGLQGAGKTTTAGKLA 121 Query: 133 KKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 K + + K V+L + D +R AAI QL+ A F S++ +A A ++A+ Sbjct: 122 KFLKERKKKSVLLVSADVYRPAAIKQLETLAGDLGVTFFPSDVSQKPVDIANAAIREAKL 181 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K +DV+I+DTAGRL ++ +MA I + +K P L V+DA TGQ+A + Sbjct: 182 KFIDVVILDTAGRLAVDTEMMAEIQALHAAVK------PVETLFVVDAMTGQDAANTAKA 235 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F TG+++TK+DG ARGG + + P+ F+G+GE + LEPF ++ I Sbjct: 236 FSDALPLTGVVLTKVDGDARGGAALSVRHITGKPIKFIGMGEKSDALEPFHPDRIASRIL 295 Query: 312 GCLD 315 G D Sbjct: 296 GMGD 299 >gi|313904181|ref|ZP_07837560.1| signal recognition particle protein [Eubacterium cellulosolvens 6] gi|313470983|gb|EFR66306.1| signal recognition particle protein [Eubacterium cellulosolvens 6] Length = 452 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 97/312 (31%), Positives = 162/312 (51%), Gaps = 31/312 (9%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S + KL+ ++ S +L +D V+ L+++ L+ +D+ V ++ + + K Sbjct: 3 FESLTDKLQNVFKNLRSKGKLTEDDVKAALKEVKMALLEADVNFKVVKQFTKTVQEKAIG 62 Query: 77 KDVS--------VQRVLYDVSELIHKM-----LMPLSKPFNWDFSHRPHVILVVGVNGVG 123 +DV V ++++D EL++ M +PL KP N D + VI+++G+ G G Sbjct: 63 QDVMNGLNPGQMVIKIVHD--ELVNLMGESTTELPL-KPSN-DLT----VIMMIGLQGSG 114 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT + KL+ +M G K +LAA D +R AI+QL+I D+ + A +A Sbjct: 115 KTTTVSKLAGQMKQKGRKPLLAALDVYRPGAIEQLQINGDKVGVEVFSMGNQVKPADIAR 174 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 A+ A++ +VL +DTAGRL + +M + IR ++D L V+DA TGQ Sbjct: 175 AAYDHAKSTGANVLFLDTAGRLQIDESMMEEL-VAIRETIKVDVS-----LLVVDAMTGQ 228 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 A+ F+ G G+++TKMDG RGG + I P+ ++G+GE ++DLE F Sbjct: 229 EAVNVARTFNEKVGIDGVVLTKMDGDTRGGAALSIRAICGKPIMYVGMGEKMSDLEQFYP 288 Query: 304 KDFSAVITGCLD 315 ++ I G D Sbjct: 289 DRMASRILGMGD 300 >gi|302691416|ref|XP_003035387.1| hypothetical protein SCHCODRAFT_74858 [Schizophyllum commune H4-8] gi|300109083|gb|EFJ00485.1| hypothetical protein SCHCODRAFT_74858 [Schizophyllum commune H4-8] Length = 573 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 89/288 (30%), Positives = 144/288 (50%), Gaps = 28/288 (9%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA--------KDVS----VQRVLYDVSE 90 D +E+ L+ SD+ V + + ++ TK A KDV+ +Q+ ++D E Sbjct: 29 DATLKEITAALLESDVNVKLVASLRSKVKTKVKAIFEGGDKTKDVNRKNVIQKAVFD--E 86 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 L+ ++ P +P+ H +VI+ VG+ G GKTT KL+ G K + DTF Sbjct: 87 LV-ALVDPGVEPYKPKKGHT-NVIMAVGLQGNGKTTTCTKLAVHYQKRGFKSAIVCADTF 144 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R+ A DQ + A + + S +D ++A + + + ++ +V+I+DT+GR Sbjct: 145 RAGAFDQTRQSATKAKVAYFGSYTETDPVSIAAQGVAKFKKERFEVIIVDTSGRHKQEQE 204 Query: 211 L---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 L M IG+ ++ P + VLDA+ GQ A Q F A +I+TKMD Sbjct: 205 LFEEMILIGQAVK---------PDMTILVLDASIGQAAEAQARAFKDSADFGAIIVTKMD 255 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G A+GGG I V + P+ FLGVGE ++DL+ F + F + + G D Sbjct: 256 GHAKGGGAISAVAATQTPIIFLGVGEHLHDLDRFAPQPFISKLLGLGD 303 >gi|298345305|ref|YP_003717992.1| signal recognition particle subunit SRP54 [Mobiluncus curtisii ATCC 43063] gi|304390862|ref|ZP_07372814.1| signal recognition particle protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235366|gb|ADI66498.1| signal recognition particle subunit SRP54 [Mobiluncus curtisii ATCC 43063] gi|304325745|gb|EFL92991.1| signal recognition particle protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 557 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 96/312 (30%), Positives = 151/312 (48%), Gaps = 25/312 (8%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +LT+ F + K K +D+ D ++ LI +D+ + V + + K Y Sbjct: 8 RLTESFKNLRKKGKLKDSDV-------DATVSDIRRALIEADVALEVVKDFTATVKEKAY 60 Query: 76 AKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129 S Q+++ V++ + +L + ++ + P V ++ G+ G GKTT+ G Sbjct: 61 GAARSEALNPAQQIVKIVNDELINILGGEDRELHFSKPGKGPTVFMLAGLQGAGKTTLAG 120 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAF 186 KL K ++ KV+L A D R A++QL+I ++ E G+ D +A A Sbjct: 121 KLGKWLAKENRKVLLVAADLQRPNAVNQLQIVGEQAGVTVFAPEPGNGVGDPVDVARRAL 180 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A DV+I+DTAGRL + LMA + IR D P VL VLDA GQ+A+ Sbjct: 181 ALASGSGYDVMIVDTAGRLGVDEELMA-QARSIR-----DEVQPDEVLFVLDAMIGQDAV 234 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 R F TG+++TK+DG ARGG + + +PV F GEG++D E F A Sbjct: 235 RTARAFQEGVDFTGVVLTKLDGDARGGAALSVRGVTGVPVLFASTGEGLDDFERFHADRM 294 Query: 307 SAVITGCLDYGE 318 ++ I LD G+ Sbjct: 295 ASRI---LDMGD 303 >gi|146416143|ref|XP_001484041.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC 6260] Length = 560 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 108/204 (52%), Gaps = 6/204 (2%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 H+I+ VG+ G GKTT KL+ G KV L DTFR+ A DQLK A ++ + Sbjct: 134 HIIMFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNATKSLIPYYG 193 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 S + +D +A+E + + +K D++I+DT+GR L +M+++ + + P Sbjct: 194 SYLETDPVKVAHEGVVKFRKEKFDIIIVDTSGRHKQEQSL---FDEMVQISEAVQ---PT 247 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 + V+D + GQ A Q F + +I+TKMDG A+GGG I V + P+ F+G Sbjct: 248 QTIMVMDGSIGQAAELQARAFKETSDFGSIILTKMDGHAKGGGAISAVAATQTPIVFIGT 307 Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315 GE + DLE F F + + G D Sbjct: 308 GEHVGDLETFRPSAFISKLLGIGD 331 >gi|253702085|ref|YP_003023274.1| signal recognition particle protein [Geobacter sp. M21] gi|251776935|gb|ACT19516.1| signal recognition particle protein [Geobacter sp. M21] Length = 453 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 92/290 (31%), Positives = 148/290 (51%), Gaps = 20/290 (6%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLY 86 +++ + D +RE + L+ +D+ V ++ VE++ + +V V ++++ Sbjct: 21 VMTEENVKDALRE-VRLALLEADVNFKVVKEFVEKVRGRAVGTEVLQSLAPGQQVIKIVH 79 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 D EL+ +LM + + D + +P V I++VG+ G GKTT GKL+K + K +L Sbjct: 80 D--ELV--LLMGGEEDNSLDLAAKPPVAIMLVGLQGAGKTTSCGKLAKFLKAQRKKALLV 135 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 D +R AAI+QLK+ + + SE + A + A DV+I DTAGR Sbjct: 136 PADVYRPAAIEQLKVLGRQLDIEVFGSEATQKPLEICRAAHRYATLNGFDVVIFDTAGRH 195 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 + LM + + IR D AP +L V DA TGQ A+ F+ G TG+I+TK Sbjct: 196 QIDDYLMEEL-EAIR-----DELAPREILFVADAMTGQEAVNVASGFNDRLGITGVILTK 249 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +DG A+GG + I PV F+G+GE ++ L+ F A + I G D Sbjct: 250 LDGDAKGGAALSIKAVTGKPVKFVGLGEKLDALDVFHADRLVSRILGMGD 299 >gi|210135311|ref|YP_002301750.1| signal recognition particle protein [Helicobacter pylori P12] gi|210133279|gb|ACJ08270.1| signal recognition particle protein [Helicobacter pylori P12] Length = 448 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ VA+++++++ ++ + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L L +L LS + F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVL+ Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + ++ VL PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I +P+ F+G GE I DL+ FV + + G D Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291 >gi|307297779|ref|ZP_07577585.1| signal recognition particle protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306917039|gb|EFN47421.1| signal recognition particle protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 438 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/289 (31%), Positives = 147/289 (50%), Gaps = 23/289 (7%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIV---------EELLTKRYAKDVSVQRVLY 86 IS + ++D V++ ++ L+ +D+ V ++ + EE+L K + D +++ Sbjct: 22 ISEKNIEDAVKQ-VKLSLLEADVNYKVVKEFIGGITEKALGEEVL-KSFTPDQQFIKIVR 79 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 D ELI KML S P S +P I++VG+ G GKTT KL + G K +L A Sbjct: 80 D--ELI-KMLGEKSVPLK--LSSQPSKIMMVGLQGSGKTTTTAKLGTLLRKEGRKPLLVA 134 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 D +R AAIDQL + + + + EA +QA DV+I+DTAGRLH Sbjct: 135 ADVYRPAAIDQLMQLGKQIDMPVFTGD-RKNPVKIVQEAMQQAVRNINDVVILDTAGRLH 193 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + +M + +++ +K P +L V+DA TGQ+A+ + F+ +G ++TK+ Sbjct: 194 IDDAMMRELKEIVSAVK------PDEILMVVDAMTGQDAVNSAKAFNEALELSGFVVTKL 247 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG ARGG ++ I PV F+G+ E + +E F + I G D Sbjct: 248 DGDARGGVILSIRHVTGKPVKFIGISEKPDGIEAFHPDRVAGRILGMGD 296 >gi|294944803|ref|XP_002784438.1| signal recognition particle 54 kDa protein 2 [Perkinsus marinus ATCC 50983] gi|239897472|gb|EER16234.1| signal recognition particle 54 kDa protein 2 [Perkinsus marinus ATCC 50983] Length = 528 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 88/296 (29%), Positives = 147/296 (49%), Gaps = 20/296 (6%) Query: 29 KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---------VEELLTKRYAKDV 79 K G +I LD+ ++E + L+++D+ V ++ +EEL K Sbjct: 16 KLGKATVIDEAVLDECLKE-ISTALLQADVNVRYVAELRKNIKRTVDLEELAAPGSNKQR 74 Query: 80 SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139 +Q+ + V++L+ +ML P +P+ +P+VI+ VG+ G GKTT K + G Sbjct: 75 VIQKAV--VNQLV-EMLSPDKEPYKPT-KGQPNVIMFVGLQGSGKTTSCTKYAHYYQRKG 130 Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199 +V L DTFR+ A DQLK A + F S + SD +A E + K D++I+ Sbjct: 131 WRVALVCADTFRAGAFDQLKQNATKVKIPFYGSYVESDPVKIAKEGVDLFKKDKYDIIIV 190 Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 DT+GR + L +M +V ++ P+ ++ V+D+ GQ Q + F Sbjct: 191 DTSGRHRQEAAL---FDEMTQVAHAVN---PNDIVFVMDSHIGQACFEQAKAFKDTVSVG 244 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +++TK+DG A+GGG + V P+ F+G GE ++ EPF A+ F + G D Sbjct: 245 SVVVTKLDGHAKGGGALSAVAATDSPIIFIGTGEHFDEFEPFDAQSFVQRLLGLGD 300 >gi|307721676|ref|YP_003892816.1| signal recognition particle subunit FFH/SRP54 (srp54) [Sulfurimonas autotrophica DSM 16294] gi|306979769|gb|ADN09804.1| signal recognition particle subunit FFH/SRP54 (srp54) [Sulfurimonas autotrophica DSM 16294] Length = 451 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 140/256 (54%), Gaps = 8/256 (3%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWD 106 EL+ L+++D+ V +++++++ + K + + L + E ++++L + +K F + Sbjct: 31 ELKKNLLKADVNHKVVKELIQKVQIRTKEKGIGKDQFLEALRETLNELLEVGGNKGFVF- 89 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P VIL+ G+ G GKTT GKL+ + + G KV++ A D R AA++QL+ Sbjct: 90 APNPPTVILMTGLQGSGKTTTTGKLATYLKNKGKKVLIVAADLQRLAAVEQLRQITSAIE 149 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + E + + A K A +K DV++IDTAGRL + LM + K ++ D Sbjct: 150 VELYEDEATKNPVEVVKAALKYADSKIFDVVLIDTAGRLAIDDELMDEL-KAVK-----D 203 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P + V D+ TGQ+A+R F G G+I++K DG A+GG + + ++P+ Sbjct: 204 AAKPDEIFYVADSLTGQDAVRTATTFKEKIGIDGVILSKYDGDAKGGVALGLSSQVQVPL 263 Query: 287 YFLGVGEGINDLEPFV 302 F+G+GE + DLE F+ Sbjct: 264 RFIGMGEKMEDLEVFL 279 >gi|254476642|ref|ZP_05090028.1| signal recognition particle protein [Ruegeria sp. R11] gi|214030885|gb|EEB71720.1| signal recognition particle protein [Ruegeria sp. R11] Length = 507 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/269 (30%), Positives = 138/269 (51%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA+ ++++ + + V+ Q+V+ V + + L P Sbjct: 38 LLEADVSLPVARDFIKKVQDQATGQAVTKSVTPGQQVVKIVHDALVDTLRGEGDPGQLKI 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P IL+VG+ G GKTT GKL+K++ + G KV++A+ D +R AA+DQL + + Sbjct: 98 DSPPAPILMVGLQGSGKTTTTGKLAKRLKEKEGKKVLMASLDVYRPAAMDQLAVLGTQIG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G +A A +QA DV ++DTAGRL + +LM + + V+ Sbjct: 158 VDTLPIVPGQKPVDIAKRAKQQAVLGGYDVYMLDTAGRLQIDEVLMQEVEDVRDVV---- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 +P L V+D TGQ A+ E F A G +G+++T+MDG RGG + + P+ Sbjct: 214 --SPRETLLVVDGLTGQVAVEVAEEFDAKIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ +E F + I G D Sbjct: 272 RFVGLGEKMDAIETFEPDRIAGRILGMGD 300 >gi|251797472|ref|YP_003012203.1| signal recognition particle protein [Paenibacillus sp. JDR-2] gi|247545098|gb|ACT02117.1| signal recognition particle protein [Paenibacillus sp. JDR-2] Length = 462 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 21/289 (7%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS---------VQRVLY 86 ++ L++ +RE + L+ +D+ V + + ++ K DVS + V Sbjct: 24 VTEEDLNEAMRE-VRLALLEADVNFKVVKDFIAKVKEKALGLDVSKSFTPGMVVIDIVNK 82 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 +++EL+ L+K + P VI++VG+ G GKTT KL+K + K +L A Sbjct: 83 ELTELMGGTQSKLAKA-----NKPPTVIMMVGLQGAGKTTTTAKLAKLLQKGNSKPLLVA 137 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 D +R AAI QL++ ++ +A + +A A+ D +I DTAGRLH Sbjct: 138 CDIYRPAAIKQLQVLGEQINAPVFSLGDQTSPVEIAKAGLAHARENHNDYVIFDTAGRLH 197 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + LM + ++ + +K P VL V+DA TGQ+A+ + FH TG+++TK+ Sbjct: 198 IDEALMEELKQIHQNVK------PDEVLLVVDAMTGQDAVNVAQSFHEQLELTGVVLTKL 251 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG RGG + + P+ F +GE I+ LEPF ++ I G D Sbjct: 252 DGDTRGGAALSVKAVTGKPIKFAAMGEKIDALEPFHPDRMASRILGMGD 300 >gi|119899521|ref|YP_934734.1| signal recognition particle protein [Azoarcus sp. BH72] gi|119671934|emb|CAL95848.1| signal recognition particle protein [Azoarcus sp. BH72] Length = 452 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 115/209 (55%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P VIL+ G+ G GKTT GKL+K + ++ KV++ + D +R AAI+QLK A + Sbjct: 97 TQPPAVILMAGLQGAGKTTTTGKLAKHLKESQKKKVLVVSTDVYRPAAIEQLKAVAAQAG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 +F S++ +A A A+ VDVL++DTAGRL + +MA I + +K Sbjct: 157 VEFFPSQVDQRPVDIALGAVDFARKHHVDVLLVDTAGRLAIDEAMMAEIQALHAAVK--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA GQ+A+ F+ TG+++TK+DG ARGG + + P+ Sbjct: 214 ---PIETLFVVDAMLGQDAVNTARAFNDALPLTGVVLTKLDGDARGGAALSVRHVTGKPL 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F GVGE ++ LEPF ++ I G D Sbjct: 271 KFAGVGEKLSGLEPFHPDRMASRILGMGD 299 >gi|5822474|pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus Aquaticus gi|5822475|pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus Aquaticus gi|5822476|pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus Aquaticus Length = 425 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 92/309 (29%), Positives = 143/309 (46%), Gaps = 28/309 (9%) Query: 21 FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S +L+E I + R+ + E+ L+ +D+ + V + VE + + Sbjct: 2 FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALG 61 Query: 77 KDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 K V + +L V E + + L +P+ K N F +VG+ G GKTT Sbjct: 62 KQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWF--------LVGLQGSGKTT 113 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL+ G + +L A DT R AA +QL++ ++ + G ++ Sbjct: 114 TAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 ++A+ + D++++DTAGRL + LM + ++ VL P VL VLDA TGQ AL Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEAL 227 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G TGL++TK+DG ARGG + P+YF GV E LEPF + Sbjct: 228 SVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERL 287 Query: 307 SAVITGCLD 315 + I G D Sbjct: 288 AGRILGMGD 296 >gi|187918549|ref|YP_001884112.1| signal recognition particle, subunit FFH/SRP54 [Borrelia hermsii DAH] gi|119861397|gb|AAX17192.1| signal recognition particle, subunit FFH/SRP54 [Borrelia hermsii DAH] Length = 449 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/291 (28%), Positives = 146/291 (50%), Gaps = 22/291 (7%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94 +I+ + ++D + + ++D LI +D+ + V ++ V + A++ +VL DV Sbjct: 21 VINEKNIEDAI-DTIKDALIEADVNLRVVRRFVNSV-----AEEAKGIKVLRDVDPKSQF 74 Query: 95 MLMPLSKPFNW----------DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 + + K N+ + ++ IL++G+ G GKTT KL+ ++ KV+L Sbjct: 75 VKIVNDKLVNFLGDKHSELILNPVNKLSCILMLGLQGSGKTTTCAKLAMRLKSENRKVLL 134 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 A DTFR+AA+DQL++ ++ E +D + ++ + A+ + D +I+DT GR Sbjct: 135 VAADTFRAAAVDQLRVLGEQIGISVFAIESENDPIKVVKKSIEYAKVELFDTVIVDTRGR 194 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 L +L+ I K+ D P + V DA TGQ A+ + F+ G TG+I T Sbjct: 195 LEVEDLLLKEIKKI------KDIVTPTETILVADAMTGQVAVNIAKEFNESVGITGVIFT 248 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 K D ARGG ++ + P+ F+GVGE DL+ F ++ I G D Sbjct: 249 KFDSDARGGAILSLKTICGAPIKFVGVGERPEDLDIFYPDRVASRILGMGD 299 >gi|226945998|ref|YP_002801071.1| signal recognition particle protein [Azotobacter vinelandii DJ] gi|226720925|gb|ACO80096.1| signal recognition particle protein [Azotobacter vinelandii DJ] Length = 458 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/304 (28%), Positives = 157/304 (51%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L +D +++ L ++ L+ +D+ + V ++ V + + Sbjct: 2 FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKEFVNRIKERAVG 61 Query: 77 KDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLS 132 +VS +++ L L N D + P V+L+ G+ G GKTT +GKL+ Sbjct: 62 TEVSKSLTPGQAFVKIVRVELETLMGAANEDLALNAAPPAVVLMAGLQGAGKTTTVGKLA 121 Query: 133 KKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + + K V++ + D +R AAI QL+ A+ F S+ +A A ++A+ Sbjct: 122 RFLKERRKKSVLVVSADIYRPAAIKQLETLAEEVGVTFFPSDAAQKPVDIAQAAIREARL 181 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K +DV+++DTAGRLH ++ +M I K++ + P L V+DA TGQ+A + Sbjct: 182 KFIDVVLLDTAGRLHVDADMMEEI-KLLHAAAK-----PVETLFVVDAMTGQDAANTAKA 235 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F TG+++TK+DG ARGG + + P+ F+G+GE + LEPF ++ I Sbjct: 236 FGDALPLTGVVLTKVDGDARGGAALSVRYITGKPIKFIGMGEKSDALEPFHPDRMASRIL 295 Query: 312 GCLD 315 G D Sbjct: 296 GMGD 299 >gi|313891433|ref|ZP_07825049.1| signal recognition particle protein [Dialister microaerophilus UPII 345-E] gi|313120208|gb|EFR43384.1| signal recognition particle protein [Dialister microaerophilus UPII 345-E] Length = 452 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 93/294 (31%), Positives = 142/294 (48%), Gaps = 23/294 (7%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 KL K F K K +DI DG E+ L+ +D+ VA+ + ++ K Sbjct: 9 KLQKAFKDLRGKGKLSESDI-------DGALREVRKALLEADVNFKVAKDFIAQVREKAI 61 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++V Q V+ V + + ++L S I++VG+ G GKTT +GK Sbjct: 62 GEEVFGSLKPDQTVIKIVRDELTQLLGGTQSKITMS-SKGLTTIMLVGLQGAGKTTTVGK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + G +L A D +R AAI QL++ A + E + A+A EA + A+ Sbjct: 121 LALMLKKKGKNPLLVACDVYRPAAIKQLQVLASQVGVSAFTIEGSKEPVAIAKEAVEYAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DV++IDTAGRL +++LM + K I+ PH +L VLD+ TGQ+A+ + Sbjct: 181 KHNNDVILIDTAGRLTIDTVLMEEL-KNIKA-----AVMPHEILLVLDSMTGQDAVTTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE----GINDLEP 300 F G G ++TKMDG ARGG + I P+ +GV E G+ D P Sbjct: 235 AFDESLGIDGTVLTKMDGDARGGAALSIKAVTGKPIKLIGVSEKLDGGLEDFYP 288 >gi|315639588|ref|ZP_07894728.1| signal recognition particle protein [Enterococcus italicus DSM 15952] gi|315484549|gb|EFU75005.1| signal recognition particle protein [Enterococcus italicus DSM 15952] Length = 472 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 116/208 (55%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ ++ + ++ AGD +R AAIDQLK+ + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANRLKKTENARPLMIAGDVYRPAAIDQLKVLGQQL--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 ++G+ + + + A KK D ++IDTAGRLH + LM + K I+ L + Sbjct: 159 PVFDMGTTVSPVEIVRQGLAVAAEKKNDYVLIDTAGRLHVDEALMEEL-KQIKELAQ--- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA TGQ+A+ + F+ G TG+++TK+DG RGG + I P+ Sbjct: 215 --PNEILLVVDAMTGQDAVTVADSFNQQLGITGVVITKLDGDTRGGAALSIRSVTGAPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE + DLE F ++ I G D Sbjct: 273 FTGTGEKLTDLEIFHPDRMASRILGMGD 300 >gi|325996419|gb|ADZ51824.1| Signal recognition particle, subunit Ffh SRP54 [Helicobacter pylori 2018] Length = 448 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ VA+++++++ ++ + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLSGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L L +L LS + F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLRGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVL+ Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFHEENKSVKEIANNALKRAKEAQFDVLL 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + ++ VL PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I +P+ F+G GE I DL+ FV + + G D Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291 >gi|209360587|gb|ACI42964.1| signal recognition particle protein [Lactobacillus casei] Length = 478 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 97/316 (30%), Positives = 155/316 (49%), Gaps = 22/316 (6%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A E LS +L K F+ K K +DI + R E+ L+ +D+ V + Sbjct: 1 MAFEGLS--ERLQKAFSGLRRKGKVSESDIRDAMR-------EIRLALLEADVNFDVVKT 51 Query: 66 IVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 ++ + TK +V Q+++ V++ + K + + P N H P VI++ G+ Sbjct: 52 FIKNVRTKALGAEVLESLTPSQQIIKIVNDELVKTMGEAAVPLNK-APHIPTVIMMAGLQ 110 Query: 121 GVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 GVGKTT +GKLSK M + + +L A D +R AAIDQL+ + + D Sbjct: 111 GVGKTTTVGKLSKYLMDNDSARPLLIAADVYRPAAIDQLQTIGKQLNVPVFEMGTDVDPV 170 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 + + A+ K D ++IDTAGRL + LM + K I+ L P+ +L V+DA Sbjct: 171 EIVRQGLATAKENKNDYVLIDTAGRLQIDEKLMNEL-KNIKELAH-----PNDILLVVDA 224 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQ A+ + F+ TG+++TK+DG RGG + I P+ F+G GE ++ L+ Sbjct: 225 MTGQAAVDVAKGFNEQLDITGVVLTKLDGDTRGGAALSIRAVTGKPIKFIGQGEKMDALD 284 Query: 300 PFVAKDFSAVITGCLD 315 F + I G D Sbjct: 285 VFYPDRMANRILGMGD 300 >gi|188527936|ref|YP_001910623.1| signal recognition particle protein [Helicobacter pylori Shi470] gi|188144176|gb|ACD48593.1| signal recognition particle protein [Helicobacter pylori Shi470] gi|308062429|gb|ADO04317.1| signal recognition particle protein [Helicobacter pylori Cuz20] gi|308063935|gb|ADO05822.1| signal recognition particle protein [Helicobacter pylori Sat464] Length = 448 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 88/297 (29%), Positives = 154/297 (51%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRL-DDG-----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R DDG +EL+ L+++D+ VA+++++++ ++ + Sbjct: 5 LSDGFKNALNKIRFQDDGKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L L +L LS + F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVL+ Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + ++ VL PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSASAFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I +P+ F+G GE I DL+ FV + + G D Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291 >gi|217974261|ref|YP_002359012.1| signal recognition particle protein [Shewanella baltica OS223] gi|229220585|ref|YP_001049596.2| signal recognition particle protein [Shewanella baltica OS155] gi|304409370|ref|ZP_07390990.1| signal recognition particle protein [Shewanella baltica OS183] gi|307303728|ref|ZP_07583481.1| signal recognition particle protein [Shewanella baltica BA175] gi|217499396|gb|ACK47589.1| signal recognition particle protein [Shewanella baltica OS223] gi|304351888|gb|EFM16286.1| signal recognition particle protein [Shewanella baltica OS183] gi|306912626|gb|EFN43049.1| signal recognition particle protein [Shewanella baltica BA175] Length = 457 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 157/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL ++ V+E L ++ L+ +D+ + V ++ V + + Sbjct: 2 FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++VS Q + V + K + ++ + + P VI++ G+ G GKTT + KL Sbjct: 62 QEVSKSLSPGQAFIKIVQSELEKSMGEANEALDL-ATQPPAVIMMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + K V++ + D +R AAI QL+ A + +F S++ +A A A+ Sbjct: 121 GKFLRERHKKSVLVVSADVYRPAAIKQLETLAQEVAVEFFPSDVSQKPIDIAKAAIAHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K +DV+I+DTAGRLH + +M I + +K P L V+DA TGQ+A + Sbjct: 181 LKFIDVVILDTAGRLHVDEAMMDEIKGLHAAVK------PIETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|224139052|ref|XP_002322968.1| predicted protein [Populus trichocarpa] gi|222867598|gb|EEF04729.1| predicted protein [Populus trichocarpa] Length = 491 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/290 (31%), Positives = 143/290 (49%), Gaps = 19/290 (6%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVA-------QKIVE-ELLTKRYAKDVSVQRVLY 86 II + L+D + E+ L++SD+ + +KIV + L + K +Q+ ++ Sbjct: 22 IIDEKALNDCL-NEITRALLQSDVQFKLVRDMQTNIKKIVNLDDLAAGHNKRKIIQQAIF 80 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + EL KML P KP + V++ VG+ G GKTT K + G K L Sbjct: 81 N--ELC-KMLDP-GKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 DTFR+ A DQLK A + F S + SD +A E ++ + + D++I+DT+GR Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHK 196 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 L + ++ K P V+ V+D++ GQ A Q + F +I+TKM Sbjct: 197 QEVALFEEMRQVAEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKM 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316 DG A+GGG + V K PV F+G GE +++ E F K F + + G D+ Sbjct: 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300 >gi|153808568|ref|ZP_01961236.1| hypothetical protein BACCAC_02864 [Bacteroides caccae ATCC 43185] gi|149128890|gb|EDM20107.1| hypothetical protein BACCAC_02864 [Bacteroides caccae ATCC 43185] Length = 440 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/265 (29%), Positives = 140/265 (52%), Gaps = 13/265 (4%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99 V E L+D+ L+ +D+ VA+ + + K ++V + + + +++H L L Sbjct: 26 NVAETLKDVRKALLDADVNYKVAKNFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQL 85 Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156 + D RP VIL+ G+ G GKTT GKL++ + + K +L A D +R AAI+ Sbjct: 86 MGGETVEVDIDARPAVILMSGLQGSGKTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIE 145 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL++ A++ C + +A A ++A+AK D++I+DTAGRL + +M I Sbjct: 146 QLRVLAEQIDVPMYCELESKNPVEIAQHAIQEAKAKGYDLVIVDTAGRLAVDEQMMNEIA 205 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + + P+ +L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + Sbjct: 206 AIKEAIN------PNEILFVVDSMTGQDAVNTAKEFNERLDFNGVVLTKLDGDTRGGAAL 259 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301 I P+ F+G GE ++ ++ F Sbjct: 260 SIRSVVNKPIKFVGTGEKLDAIDQF 284 >gi|319956456|ref|YP_004167719.1| signal recognition particle subunit ffh/srp54 (srp54) [Nitratifractor salsuginis DSM 16511] gi|319418860|gb|ADV45970.1| signal recognition particle subunit FFH/SRP54 (srp54) [Nitratifractor salsuginis DSM 16511] Length = 451 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 89/274 (32%), Positives = 147/274 (53%), Gaps = 18/274 (6%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLT--KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 EL+ L++SD V K+V+EL+ ++ K + + + + L +++ L+ N Sbjct: 31 ELKKALLKSD----VHHKVVKELIVTVEKETKAAGIGKESF-MKALQDELVRILTAKGNQ 85 Query: 106 DF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIW 161 F S P V+L+ G+ G GKTT GKL+ + + K V++AA D R AA++QL+ Sbjct: 86 GFVFASRPPTVVLMTGLQGSGKTTTTGKLAYMLKEQKKKKVLIAAADLQRLAAVEQLRQI 145 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 A++ D V E + + A K+A+ + DV++IDTAGRL + LM + + IR Sbjct: 146 AEQIGVDLVADE-NATPDEVVKRALKKAEDELYDVVLIDTAGRLAIDEELMEELAR-IR- 202 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 D P + V DA TG +A+R + F G TG+I++K D ++GG + I Sbjct: 203 ----DLAQPDEIFYVADAMTGMDAVRTAQTFKDKIGITGVILSKFDADSKGGVALGIAHQ 258 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P+ F+G GE + DLEPF+ + ++ + G D Sbjct: 259 VGVPLRFIGSGEKMPDLEPFIPERITSRLMGAGD 292 >gi|317182404|dbj|BAJ60188.1| signal recognition particle protein [Helicobacter pylori F57] Length = 448 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ VA+++++++ ++ + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L L +L LS + F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVL+ Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + ++ +L PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMQELKEVKEILN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I +P+ F+G GE I DL+ FV + + G D Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291 >gi|294085383|ref|YP_003552143.1| signal recognition particle protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664958|gb|ADE40059.1| signal recognition particle protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 531 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/212 (35%), Positives = 119/212 (56%), Gaps = 10/212 (4%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166 ++ P VIL+ G+ G GKTT GKL++++ + K VM+A+ D R AA +QL++ ++ Sbjct: 127 TNPPSVILMAGLQGSGKTTTAGKLARRLRERDRKKVMVASLDVTRPAAREQLRLLGEQAE 186 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 A + G +A A + A+ + DVLI+DTAGR+ + LMA + + +R Sbjct: 187 AGILPELDGESPVQIAKRALQSAKLQAYDVLILDTAGRISVDEALMAEL-RDVRA----- 240 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 PH VL V DA TGQ+A+ F+ G TG+++T++DG ARGG + + P+ Sbjct: 241 ATNPHEVLLVADAMTGQDAVTTASAFNDAVGVTGIVLTRLDGDARGGAALSMRQITGCPI 300 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 F+G+GE + LE F D + + LD G+ Sbjct: 301 KFVGIGEKQDALEEF---DPARLAGRILDMGD 329 >gi|59711155|ref|YP_203931.1| Signal recognition particle (SRP) component with 4.5S RNA (ffs) [Vibrio fischeri ES114] gi|59479256|gb|AAW85043.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Vibrio fischeri ES114] Length = 457 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 101/308 (32%), Positives = 152/308 (49%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D ++E L ++ L+ +D+ + V + V+ + K A Sbjct: 2 FDNLTDRLSRTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVRDFVKRV--KEGA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E I + L ++ N P VIL+ G+ G GKTT G Sbjct: 60 VGVEVSKSLTPGQEFIKIVQAELEAVMGDSNEALNL-ACQPPAVILMAGLQGAGKTTSTG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+K + + K V++ + D +R AAI QL+ A DF S + A Sbjct: 119 KLAKLLKERDKKKVLVVSADVYRPAAIKQLETLAADVDVDFFPSSADQKPIDIVDAAISH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALR 247 A+ K DV+I+DTAGRL ++ +M I K+L H P L V+DA TGQ+A Sbjct: 179 AKLKFFDVVIVDTAGRLAVDTEMMDEI-------KQLHAHVNPIETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F TG+I+TK+DG ARGG + + PV FLGVGE + LEPF + + Sbjct: 232 TAKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPVKFLGVGEKTDALEPFHPERIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|303291107|ref|XP_003064840.1| type II secretory pathway family protein [Micromonas pusilla CCMP1545] gi|226453866|gb|EEH51174.1| type II secretory pathway family protein [Micromonas pusilla CCMP1545] Length = 513 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 110/206 (53%), Gaps = 6/206 (2%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P+V++ VG+ G GKTT K + G K L DTFR+ A DQLK A + F Sbjct: 110 PNVVMFVGLQGCGKTTTCTKYAHHYQKKGFKPALVCADTFRAGAFDQLKQNATKARIPFY 169 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 S +D A +A + ++ +A+K D++I+DT+GR S L +M V + ++P Sbjct: 170 GSYTETDPAKIASDGVERFKAEKNDLIIVDTSGRHKQESALFE---EMRAVAEAVNPDM- 225 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 + V+D++ GQ A Q F +++TK+DG A+GGG I V + P+ F+G Sbjct: 226 --TIFVMDSSIGQAASDQAAAFKNTVDVGSVVVTKLDGHAKGGGAISAVAATRAPIVFIG 283 Query: 291 VGEGINDLEPFVAKDFSAVITGCLDY 316 GE I++ E F AK F + + G D+ Sbjct: 284 TGEHIDEFEAFDAKPFVSRLLGLGDW 309 >gi|229582222|ref|YP_002840621.1| GTP-binding signal recognition particle SRP54 G-domain [Sulfolobus islandicus Y.N.15.51] gi|259511387|sp|C3NHT9|SRP54_SULIN RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|228012938|gb|ACP48699.1| GTP-binding signal recognition particle SRP54 G-domain [Sulfolobus islandicus Y.N.15.51] Length = 447 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 96/315 (30%), Positives = 152/315 (48%), Gaps = 30/315 (9%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---V 67 L IR + F + S ++ + + I +EL+ LI SD+ V + + + Sbjct: 2 LENIRDAVRKFLTRSTPYEKAVDEFI----------KELQKSLISSDVNVKLVFSLTAKI 51 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPFNWDFSHRPHVILVVGVNGVGK 124 +E L K V ++R + +S +++ L L K N + + P +I++VGV G GK Sbjct: 52 KERLNKEKPPSV-LERKEWFIS-IVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGK 109 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT GKL+ G KV L A D +R AA DQL ++ +A +A + Sbjct: 110 TTTAGKLAYFYKRRGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVYGEPNNQNAIEIAKK 169 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL----DPHAPHSVLQVLDAT 240 K+D++I+DTAGR G G+ ++L+ + + P V+ V+DA+ Sbjct: 170 GVDTFVKNKMDIIIVDTAGR--------HGYGEETKLLEEMKEIYEALKPDDVILVIDAS 221 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQ A FH + +I+TKMDGTA+GGG + V + F+G GE I++LE Sbjct: 222 IGQKAYDLASRFHQASPIGSIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEI 281 Query: 301 FVAKDFSAVITGCLD 315 F AK + + I G D Sbjct: 282 FNAKRYVSRILGMGD 296 >gi|269793026|ref|YP_003317930.1| signal recognition particle protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100661|gb|ACZ19648.1| signal recognition particle protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 447 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/269 (31%), Positives = 134/269 (49%), Gaps = 14/269 (5%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + VE + + ++V Q+V V E + ++ KP + Sbjct: 38 LLEADVNYKVVKDFVERVRQRATGQEVLSSITPAQQVYAIVFEELLDLMGREVKPLSIS- 96 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 P V ++VG+ G GKTT K++ KM + + ML A D R AA++QL++ A Sbjct: 97 PKPPTVYMMVGLQGSGKTTTAAKIALKMKRSH-RPMLVACDLRRPAAVEQLRVLASTVGV 155 Query: 168 DFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 FV E G +D +A A ++ VD++I+DTAGR + LM + + + Sbjct: 156 PFVGPEEGETDPIRVARRALERCSETLVDLVIVDTAGRFQIDQELMQEVQDLKGAVN--- 212 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 PH VL V+D+ TGQ A+ F+ G TG+++TK+DG ARGG + I PV Sbjct: 213 ---PHEVLLVVDSMTGQEAVSVASAFNDRLGLTGVVLTKLDGDARGGAALAIRAVTGTPV 269 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G+GE ++DLE F + I G D Sbjct: 270 RLAGLGEKVDDLEVFDPNKMAQRILGMGD 298 >gi|227830212|ref|YP_002831992.1| GTP-binding signal recognition particle SRP54 G- domain protein [Sulfolobus islandicus L.S.2.15] gi|259511385|sp|C3MPN4|SRP54_SULIL RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|227456660|gb|ACP35347.1| GTP-binding signal recognition particle SRP54 G- domain protein [Sulfolobus islandicus L.S.2.15] Length = 447 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 96/315 (30%), Positives = 152/315 (48%), Gaps = 30/315 (9%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---V 67 L IR + F + S ++ + + I +EL+ LI SD+ V + + + Sbjct: 2 LENIRDAVRKFLTGSTPYEKAVDEFI----------KELQKSLISSDVNVKLVFSLTAKI 51 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPFNWDFSHRPHVILVVGVNGVGK 124 +E L K V ++R + +S +++ L L K N + + P +I++VGV G GK Sbjct: 52 KERLNKEKPPSV-LERKEWFIS-IVYDELSKLFGGDKEPNVNPTRLPFIIMLVGVQGSGK 109 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT GKL+ G KV L A D +R AA DQL ++ +A +A + Sbjct: 110 TTTAGKLAYFYKRRGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVYGEPNNQNAIEIAKK 169 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL----DPHAPHSVLQVLDAT 240 K+D++I+DTAGR G G+ ++L+ + + P V+ V+DA+ Sbjct: 170 GVDTFVKNKMDIIIVDTAGR--------HGYGEETKLLEEMKEIYEALKPDDVILVIDAS 221 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQ A FH + +I+TKMDGTA+GGG + V + F+G GE I++LE Sbjct: 222 IGQKAYDLASRFHQASPIGSIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEI 281 Query: 301 FVAKDFSAVITGCLD 315 F AK + + I G D Sbjct: 282 FNAKRYVSRILGMGD 296 >gi|154338231|ref|XP_001565340.1| signal recognition particle [Leishmania braziliensis MHOM/BR/75/M2904] gi|134062389|emb|CAM42250.1| putative signal recognition particle [Leishmania braziliensis MHOM/BR/75/M2904] Length = 566 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/284 (29%), Positives = 142/284 (50%), Gaps = 15/284 (5%) Query: 42 DDGVRE---ELEDLLIRSDIGVAVAQK----IVEELLTKRYAKDVSVQRVLYD-VSELIH 93 +D V+E E+ L+++D+ VA+ +K I EL ++ +++L + V + + Sbjct: 69 EDDVKELMNEIARALLQADVNVAIVKKLQVSIKTELALAEEGVGLNKRKILQNAVFKGLQ 128 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 ++L P KPF + +V+L VG+ G GKTT K + G K L DTFR+ Sbjct: 129 RILDPGVKPF-MPVKGKQNVVLFVGLQGSGKTTSCTKYAAYFQRKGFKTALVCADTFRAG 187 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A DQL+ A + F S +D A+A E + + +K D++I+DT+GR + L Sbjct: 188 AYDQLRQNATKAKVRFYGSLTEADPVAIAREGVAELKKEKYDLIIVDTSGRHKQEAALFE 247 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + ++ +K P+ ++ V+ AT GQ Q F A+ +I+TK+D +GG Sbjct: 248 EMKQVEEAVK------PNDIVFVMSATDGQAVEAQASHFKAMVPVGSVIVTKLDCQTKGG 301 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317 G + V + P+ F+G GE +D + F + F + G D G Sbjct: 302 GALSAVAATRSPIVFIGTGEHFDDFDLFRPERFVQKMLGMGDIG 345 >gi|153854837|ref|ZP_01996060.1| hypothetical protein DORLON_02065 [Dorea longicatena DSM 13814] gi|149752539|gb|EDM62470.1| hypothetical protein DORLON_02065 [Dorea longicatena DSM 13814] Length = 449 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 88/304 (28%), Positives = 152/304 (50%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S + KL+ ++ S RL +D V+E L+++ L+ +D+ V + ++ + + Sbjct: 3 FDSLTEKLQNVFKNLRSKGRLTEDDVKEALKEIKRALLAADVNFKVVKDFIKSVQERAIG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + ++ + VI++ G+ G GKTT KL Sbjct: 63 QDVMNGLNPGQMVIKIVNEELINLMGSETTEIKLQPGKAITVIMMAGLQGAGKTTTTAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K G K +L A D +R AAI QL++ ++ + A +A A + AQ Sbjct: 123 AGKFKLKGKKPLLVACDVYRPAAIKQLQVNGEKQGVEVFSMGENHKPANIAKAAIEHAQK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D++I+DTAGRLH + +MA + + + H + V+DA TGQ+A+ + Sbjct: 183 NGNDLVILDTAGRLHIDEDMMA------ELEEIKEEVEVHQTILVIDAMTGQDAVNVAKE 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G G+I+TK+DG RGG + + P+ ++G+GE ++DLE F ++ I Sbjct: 237 FNEKVGIDGVIVTKLDGDTRGGAALSVKAVTGKPILYVGMGEKLSDLEQFYPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|145588389|ref|YP_001154986.1| signal recognition particle protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046795|gb|ABP33422.1| signal recognition particle subunit FFH/SRP54 (srp54) [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 460 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 94/306 (30%), Positives = 155/306 (50%), Gaps = 26/306 (8%) Query: 30 EGITDIIS---------SRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAK 77 E +TD +S +R +D E L ++ L+ +D+ + V + ++E++ K + Sbjct: 3 ENLTDRLSRVVKTMRGQARLTEDNTAEMLREIRLALLEADVALPVVKSLLEQIKFKALGE 62 Query: 78 DV----SVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGK 130 +V S + L V EL M+ ++ + + +P VIL+ G+ G GKTT +GK Sbjct: 63 EVVGSLSPGQALVGVVQRELAQVMMGDTNQSGELNLATQPPAVILMAGLQGAGKTTSVGK 122 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L+K + + K V+ + D +R AAI+QL+ + A+F S + +A A A Sbjct: 123 LAKWLQEKKKKKVLTVSCDVYRPAAIEQLETVTKQVGAEFFPSNVNQKPNDIATAALDWA 182 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DV+I+DTAGRL + LM I + L P L V+DA GQ+A+ Sbjct: 183 RRHYFDVVIVDTAGRLGIDEALMQEIKTLHASLN------PIETLFVVDAMLGQDAVNTA 236 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + FH TG+I+TK+DG +RGG + + +P+ F+GV E ++ LE F A+ + Sbjct: 237 KAFHEALPLTGVILTKLDGDSRGGAALSVRQVTGVPLKFIGVAEKMDGLEAFDAERMANR 296 Query: 310 ITGCLD 315 I G D Sbjct: 297 ILGMGD 302 >gi|71066262|ref|YP_264989.1| signal recognition particle subunit FFH/SRP54 (srp54) [Psychrobacter arcticus 273-4] gi|71039247|gb|AAZ19555.1| signal recognition particle subunit FFH/SRP54 (srp54) [Psychrobacter arcticus 273-4] Length = 511 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 94/309 (30%), Positives = 158/309 (51%), Gaps = 25/309 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I + +L +D +++ L ++ L+ +D+ + V + V KR Sbjct: 2 FDTLTERLSSSLRNIAGTGQLTEDNIKDTLREVRMALLEADVALPVTRDFV-----KRVK 56 Query: 77 KDVSVQRVLYDVS------ELIHKMLMPLSKPFNW--DFSHRPHVI-LVVGVNGVGKTTV 127 + VL +++ +++H L + N + + +P V+ L+ G+ G GKTT Sbjct: 57 EQALGAEVLKELAPGQAFVKIVHDELTEMMGSANQQLEMTGKPPVVYLLAGLQGAGKTTT 116 Query: 128 IGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 GKL+K + + KVML + D +R AAI QL+ A + +A FV S + +A A Sbjct: 117 AGKLAKFLQERHKKKVMLVSADVYRPAAIAQLEQVAGQVNAKFVNSSSDENPIDIALRAI 176 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 ++A+ + D+LIIDTAGRL + +M I + + P L V+DA TGQ+A Sbjct: 177 EEAKIQYQDILIIDTAGRLAIDETMMDEIKALTAAVN------PSETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TG+I+TK DG ARGG + + P+ FLG GE ++ LE F + Sbjct: 231 NTAKAFNDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGRGEKLDALELFHPERI 290 Query: 307 SAVITGCLD 315 + I G D Sbjct: 291 AQRILGMGD 299 >gi|146308421|ref|YP_001188886.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pseudomonas mendocina ymp] gi|145576622|gb|ABP86154.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pseudomonas mendocina ymp] Length = 458 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 155/304 (50%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + ++ +L +D +++ L ++ L+ +D+ + V + V ++ + Sbjct: 2 FENLTDRLSQTLRNVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVGKVKERAVG 61 Query: 77 KDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLS 132 +VS +++ L L N D S P V+L+ G+ G GKTT GKL+ Sbjct: 62 TEVSKSLTPGQAFVKIVRAELEELMGAANEDLSLNAAPPAVVLMAGLQGAGKTTTAGKLA 121 Query: 133 KKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 K + + K V+L + D +R AAI QL+ A F S+ +A A ++A+ Sbjct: 122 KFLKERKKKSVLLVSADVYRPAAIKQLETLAGDLGVTFFPSDASQKPVDIANAAIREAKL 181 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K +DV+I+DTAGRL ++ +MA I + +K P L V+DA TGQ+A + Sbjct: 182 KFIDVVILDTAGRLAVDAEMMAEIQALHAAVK------PVETLFVVDAMTGQDAANTAKA 235 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F TG+++TK+DG ARGG + + P+ F+G+GE + LEPF ++ I Sbjct: 236 FSDALPLTGVVLTKVDGDARGGAALSVRHITGKPIKFIGMGEKSDALEPFHPDRIASRIL 295 Query: 312 GCLD 315 G D Sbjct: 296 GMGD 299 >gi|323456635|gb|EGB12501.1| putative GTP binding signal recognition particle protein SRP54 [Aureococcus anophagefferens] Length = 530 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 112/209 (53%), Gaps = 10/209 (4%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+L+ G+ G GKTT KL+ ++ + G ML A D +R AA++QL+I ++ Sbjct: 150 PTVVLLCGLQGAGKTTAAAKLALRLKEEEGKTPMLVAADVYRPAAVEQLQILGEQVGVPV 209 Query: 170 VCS--EIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 E G+ DA A+A + A+ + DV+I+DTAGR LMA + + +R + Sbjct: 210 YAEAFEAGAGDAVAIATAGVRAAKERGADVVIVDTAGRQVIEESLMAEL-RSVRAATK-- 266 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L VLDA TGQ+A + F TG ++TK+DG ARGG + + P+ Sbjct: 267 ---PDETLLVLDAMTGQDAASLAKRFDDACPLTGSVLTKLDGDARGGAALSVRAVSGKPI 323 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+GVGE + DLEPF ++ I G D Sbjct: 324 KFVGVGEKVGDLEPFFPARMASRILGMGD 352 >gi|309792455|ref|ZP_07686919.1| signal recognition particle protein [Oscillochloris trichoides DG6] gi|308225443|gb|EFO79207.1| signal recognition particle protein [Oscillochloris trichoides DG6] Length = 460 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 95/308 (30%), Positives = 153/308 (49%), Gaps = 22/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72 F S S +L+ + S +L +D VRE ++ + L+ +D+ V + K+ E+ + Sbjct: 2 FESLSDRLQTVFQKLGSKGKLTEDDVREAMKQVRLALLEADVNFKVVKDFVAKVTEQAIG 61 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIG 129 + K ++ + V +++H+ L+ L N P VI++VG+ G GKTT+ Sbjct: 62 EEVTKSLTPHQ---QVVKIVHQELINLLGTDNVPLQESRPGPTVIMLVGLQGTGKTTLSA 118 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G +V+LAA D +R AAI QL+ + +A A + A Sbjct: 119 KLALHLRKKGRRVLLAACDIYRPAAITQLESLGKQLGITVYSEPNSKHPPEIATRAVELA 178 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + + +V+I+DTAGRL + LM + + ++ P L V+DA TGQ A+R Sbjct: 179 KKELYNVVIVDTAGRLQIDEPLMKELEDIDACVQ------PIERLLVVDAMTGQEAVRVA 232 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI--NDLEPFVAKDFS 307 E F+ TGL+MTKMDG ARGG + + +P+ F+ GE I N LE F + Sbjct: 233 ETFNQRVKVTGLVMTKMDGDARGGAALSVRSVTGVPIKFISSGEKIDLNTLEAFHPDRLA 292 Query: 308 AVITGCLD 315 + I G D Sbjct: 293 SRILGMGD 300 >gi|291615196|ref|YP_003525353.1| signal recognition particle protein [Sideroxydans lithotrophicus ES-1] gi|291585308|gb|ADE12966.1| signal recognition particle protein [Sideroxydans lithotrophicus ES-1] Length = 450 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/206 (38%), Positives = 111/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT GKL+K + + K V+L + D +R AAI+QL++ A + DF Sbjct: 100 PAVILMAGLQGAGKTTSSGKLAKLLREQNKKKVLLVSCDVYRPAAIEQLRMLAQQLDVDF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S+ +A A A+ DVLI+DTAGRL + +MA I + LK Sbjct: 160 FPSDASQKPQDIALAAHDFAKKHHHDVLIVDTAGRLAVDEAMMAEIKDLHAALK------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA TGQ+A+ + F TG+I+TK+DG ARGG + + P+ F+ Sbjct: 214 PIETLFVVDAMTGQDAVNTAKAFGDALPLTGVILTKLDGDARGGAALSVRQVTGKPIKFV 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E N LE F + + I G D Sbjct: 274 GVSEKPNGLEAFHPERMAQRILGMGD 299 >gi|163796732|ref|ZP_02190690.1| signal recognition particle protein [alpha proteobacterium BAL199] gi|159177986|gb|EDP62533.1| signal recognition particle protein [alpha proteobacterium BAL199] Length = 495 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 89/274 (32%), Positives = 146/274 (53%), Gaps = 13/274 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ + V + V+ + + ++V SV Q V+ V + + ML S+ Sbjct: 33 EVRVALLEADVALPVVKTFVDRVRERAIGREVLRSVTPGQMVVKIVHDELVDMLGSDSQA 92 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIW 161 N + P IL+VG+ G GKTT K++K++ + K V++A+ D R AA +QL+I Sbjct: 93 INLNAPA-PVPILMVGLQGGGKTTTTAKIAKRLRERDRKKVLMASLDVTRPAAREQLRIL 151 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 ++ + G AA+A A + + DV+I+DTAGR + LMA + + +R Sbjct: 152 GEQVGVATLPIINGETPAAIAKRAMTAGRLQGYDVVILDTAGRTSIDEGLMAEV-RAVR- 209 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 D PH VL V DA TGQ+A+ FH G TG+++T++DG +RGG + + Sbjct: 210 ----DAVNPHEVLLVADALTGQDAVTTATNFHERVGITGIVLTRVDGDSRGGAALSMRGV 265 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P+ LGVGE ++D+E F + + I G D Sbjct: 266 TGMPIKMLGVGEKVDDIEDFHPERLAGRILGMGD 299 >gi|157881430|pdb|2C03|A Chain A, Gdp Complex Of Srp Gtpase Ffh Ng Domain gi|157881431|pdb|2C03|B Chain B, Gdp Complex Of Srp Gtpase Ffh Ng Domain Length = 297 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 92/309 (29%), Positives = 143/309 (46%), Gaps = 28/309 (9%) Query: 21 FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S +L+E I + R+ + E+ L+ +D+ + V + VE + + Sbjct: 2 FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALG 61 Query: 77 KDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 K V + +L V E + + L +P+ K N F +VG+ G GKTT Sbjct: 62 KQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWF--------LVGLQGSGKTT 113 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL+ G + +L A DT R AA +QL++ ++ + G ++ Sbjct: 114 TAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 ++A+ + D++++DTAGRL + LM + ++ VL P VL VLDA TGQ AL Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEAL 227 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G TGL++TK+DG ARGG + P+YF GV E LEPF + Sbjct: 228 SVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERL 287 Query: 307 SAVITGCLD 315 + I G D Sbjct: 288 AGRILGMGD 296 >gi|328772629|gb|EGF82667.1| hypothetical protein BATDEDRAFT_86146 [Batrachochytrium dendrobatidis JAM81] Length = 565 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/277 (31%), Positives = 136/277 (49%), Gaps = 26/277 (9%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKRYAKDVSVQRVLYDVSELIHK 94 + + +E+ L+ SD+ V + Q + + + L+ K +Q+ ++D EL K Sbjct: 29 EAILKEICGALLESDVNVRLVQSLRKNIKSIVNLQELSSGINKKRIIQKAIFD--ELC-K 85 Query: 95 MLMPLS-----KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 ++ P KP +P+VI+ VG+ G GKTT K++ G + L DT Sbjct: 86 LVDPGQGVVAFKPRKG----KPNVIMFVGLQGSGKTTTCTKMAYYYQRKGYRTCLVCTDT 141 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+ A DQLK A + + S SD LA E + + + +V+I+DT+GR + Sbjct: 142 FRAGAFDQLKQNATKAKIPYYGSYTESDPVQLAMEGVDKFKVEGFEVIIVDTSGRHRQET 201 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 L + ++ V+K P +V+ VLD T GQ A F +++TKMDG Sbjct: 202 ELFQEMQQISNVIK------PDNVVFVLDGTIGQAADAHARAFQETVDIGSIVITKMDGH 255 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 A+GGG I V P+ F+G GE I+DLE F ++ F Sbjct: 256 AKGGGAISAVAATGSPILFIGTGEHIHDLEIFKSQSF 292 >gi|238790728|ref|ZP_04634489.1| Signal recognition particle protein [Yersinia frederiksenii ATCC 33641] gi|238721169|gb|EEQ12848.1| Signal recognition particle protein [Yersinia frederiksenii ATCC 33641] Length = 453 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/209 (37%), Positives = 113/209 (54%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT + KL K + + K V++ + D +R AAI QL+ A Sbjct: 97 AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKHKKKVLVVSADVYRPAAIKQLETLAQGVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S++ + A +QA+ K DVLI+DTAGRLH + +M I ++ +K Sbjct: 157 IDFFPSDVQEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I P+ Sbjct: 214 ---PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 FLGVGE LEPF ++ I G D Sbjct: 271 KFLGVGEKSEALEPFHPDRVASRILGMGD 299 >gi|294789764|ref|ZP_06754994.1| signal recognition particle protein [Simonsiella muelleri ATCC 29453] gi|294482270|gb|EFG29967.1| signal recognition particle protein [Simonsiella muelleri ATCC 29453] Length = 454 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 89/291 (30%), Positives = 145/291 (49%), Gaps = 21/291 (7%) Query: 37 SSRRLDDGVREELEDL---LIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDVS 89 S+ +D ++E L ++ L+ +D+ + + + V E L A +++ + + + Sbjct: 19 QSKLTEDNIKEALREVRLALLEADVALPIVKDFVNSVKERALGHEIADNLTPDQAFFGI- 77 Query: 90 ELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM--L 144 +++ L+ L N + P IL+ G+ G GKTT +GKL+K + D K + Sbjct: 78 --VNQALIDLMGKENTSLNLSTTPPATILMAGLQGAGKTTTVGKLAKLIKDQDKKKKILV 135 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 + D +R AAI+QLK+ A++ DF S + +A A+ DVL++DTAGR Sbjct: 136 VSADVYRPAAIEQLKLLAEQVGVDFFPSNTTQQPVQIVRDAQNYAKKHFYDVLMVDTAGR 195 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 L + I MI + P L V+DA GQ+A+ + F+ TG+++T Sbjct: 196 LAID------IEMMIEIRAIHSAINPIETLFVIDAMLGQDAVNTAQAFNETLPLTGVVLT 249 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 KMDG ARGG + + P+ F+GVGE IN LEPF ++ I G D Sbjct: 250 KMDGDARGGAALSVRQITGKPIKFIGVGEKINGLEPFYPDRIASRILGMGD 300 >gi|18402407|ref|NP_564535.1| signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) [Arabidopsis thaliana] gi|21542461|sp|P49967|SR543_ARATH RecName: Full=Signal recognition particle 54 kDa protein 3; Short=SRP54 gi|17386102|gb|AAL38597.1|AF446864_1 At1g48900/F27K7_8 [Arabidopsis thaliana] gi|15450461|gb|AAK96524.1| At1g48900/F27K7_8 [Arabidopsis thaliana] gi|15810010|gb|AAL06932.1| At1g48900/F27K7_8 [Arabidopsis thaliana] gi|332194242|gb|AEE32363.1| signal recognition particle subunit SRP54 [Arabidopsis thaliana] Length = 495 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/290 (31%), Positives = 141/290 (48%), Gaps = 19/290 (6%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQ-------KIVE-ELLTKRYAKDVSVQRVLY 86 II + L++ + E + L++SD+ + + KIV E L + K +++ ++ Sbjct: 22 IIDEKALNECLNE-ITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIF 80 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 SEL KML P KP + V++ VG+ G GKTT K + G K L Sbjct: 81 --SELC-KMLDP-GKPAFAPKKAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVC 136 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 DTFR+ A DQLK A + F S SD +A E + + D++I+DT+GR Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHK 196 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + L + ++ K P V+ V+D++ GQ A Q + F +I+TKM Sbjct: 197 QEASLFEEMRQVAEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKM 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316 DG A+GGG + V K PV F+G GE +++ E F K F + + G D+ Sbjct: 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300 >gi|308068626|ref|YP_003870231.1| signal recognition particle protein [Paenibacillus polymyxa E681] gi|305857905|gb|ADM69693.1| Signal recognition particle protein [Paenibacillus polymyxa E681] Length = 458 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/267 (29%), Positives = 137/267 (51%), Gaps = 10/267 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 L+ +D+ V + + ++ K K+V + V+ D+ LM S+ + Sbjct: 39 LLEADVNFKVVKDFIAKVKEKSVGKEVMDSFTPGMVIIDIVNKELTELMGGSQAKLAKAN 98 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P VI++VG+ G GKTT GKL+K + + +L AGD +R AAI QL++ ++ + Sbjct: 99 KPPTVIMMVGLQGAGKTTTSGKLAKLLQKQNHRPLLVAGDIYRPAAIKQLQVLGEQINTP 158 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + +A + + A+ D +IIDTAGRLH + LM + ++ +K Sbjct: 159 VFTLGDQTSPVEIAKQGLQHAKDNGNDYVIIDTAGRLHVDEELMEELRQIHTNVK----- 213 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P VL V+D+ TGQ+A+ E F++ TG+++TK+DG RGG + + P+ F Sbjct: 214 -PDEVLLVVDSMTGQDAVNVAEHFNSSLELTGVVLTKLDGDTRGGAALSVKAVTGCPIKF 272 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +GE ++ +EPF + ++ I G D Sbjct: 273 ATLGEKLDAMEPFHPERMASRILGMGD 299 >gi|229579027|ref|YP_002837425.1| GTP-binding signal recognition particle SRP54 G- domain protein [Sulfolobus islandicus Y.G.57.14] gi|284997634|ref|YP_003419401.1| GTP-binding signal recognition particle SRP54, G- domain protein [Sulfolobus islandicus L.D.8.5] gi|259511388|sp|C3NDW4|SRP54_SULIY RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|228009741|gb|ACP45503.1| GTP-binding signal recognition particle SRP54 G- domain protein [Sulfolobus islandicus Y.G.57.14] gi|284445529|gb|ADB87031.1| GTP-binding signal recognition particle SRP54, G- domain protein [Sulfolobus islandicus L.D.8.5] Length = 447 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 96/315 (30%), Positives = 152/315 (48%), Gaps = 30/315 (9%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---V 67 L IR + F + S ++ + + I +EL+ LI SD+ V + + + Sbjct: 2 LENIRDAVRKFLTGSTPYEKAVDEFI----------KELQKSLISSDVNVKLVFSLTAKI 51 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPFNWDFSHRPHVILVVGVNGVGK 124 +E L K V ++R + +S +++ L L K N + + P +I++VGV G GK Sbjct: 52 KERLNKEKPPSV-LERKEWFIS-IVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGK 109 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT GKL+ G KV L A D +R AA DQL ++ +A +A + Sbjct: 110 TTTAGKLAYFYKRRGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVYGEPNNQNAIEIAKK 169 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL----DPHAPHSVLQVLDAT 240 K+D++I+DTAGR G G+ ++L+ + + P V+ V+DA+ Sbjct: 170 GVDTFVKNKMDIIIVDTAGR--------HGYGEETKLLEEMKEIYEALKPDDVILVIDAS 221 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQ A FH + +I+TKMDGTA+GGG + V + F+G GE I++LE Sbjct: 222 IGQKAYDLASRFHQASPIGSIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEI 281 Query: 301 FVAKDFSAVITGCLD 315 F AK + + I G D Sbjct: 282 FNAKRYVSRILGMGD 296 >gi|220931573|ref|YP_002508481.1| signal recognition particle protein [Halothermothrix orenii H 168] gi|219992883|gb|ACL69486.1| signal recognition particle protein [Halothermothrix orenii H 168] Length = 444 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/209 (36%), Positives = 114/209 (54%), Gaps = 8/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P +I++VG+ G GKTT KL++ + G K +L AGD +R AAI QL++ DR Sbjct: 98 SKPPTIIMLVGLQGAGKTTSAAKLARFLKKKGKKPLLVAGDIYRPAAIKQLQVLGDRLDI 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + ++ +A++ DV+IIDTAGRLH + +M+ LK + Sbjct: 158 PVFSMGDKNSPVDISKAGISKAESNGNDVVIIDTAGRLHIDE-------EMMDELKSIKS 210 Query: 228 HA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 + PH +L V+DA TGQ+A+ E F G G+I+TK+DG ARGG + I P+ Sbjct: 211 NVRPHEILLVVDAMTGQDAVNVAENFSESLGIDGIILTKLDGDARGGAALSIKAVTGKPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ LE F S+ I G D Sbjct: 271 KFVGMGEKLDALESFHPDRMSSRILGMGD 299 >gi|257452589|ref|ZP_05617888.1| Signal recognition particle, subunit FFH/SRP54 [Fusobacterium sp. 3_1_5R] gi|317059129|ref|ZP_07923614.1| signal recognition particle protein [Fusobacterium sp. 3_1_5R] gi|313684805|gb|EFS21640.1| signal recognition particle protein [Fusobacterium sp. 3_1_5R] Length = 449 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/205 (34%), Positives = 110/205 (53%), Gaps = 6/205 (2%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P V+++ G+ G GKTT GKL+K + KV+L A D +R AAI QL++ + Sbjct: 100 PTVLMLSGLQGAGKTTFAGKLAKFLKKQNEKVLLVAADVYRPAAIKQLQVLGQQVDVAVY 159 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 E D + A ++A+ + +IIDTAGRLH + LM + +R +KRL P Sbjct: 160 AEEGHQDVLGICERALEKAKEEHATYMIIDTAGRLHIDEALM----EELRNIKRL--TRP 213 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 +L V+D+ GQ+A+ + F+ G+++TK+DG RGG + I P+ F+G Sbjct: 214 QEILLVVDSMIGQDAVNLAKSFNESLSIDGVVLTKLDGDTRGGAALSIKSVVGKPIKFIG 273 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 VGE ++D+E F + I G D Sbjct: 274 VGEKLDDIELFHPDRLVSRILGMGD 298 >gi|99082443|ref|YP_614597.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ruegeria sp. TM1040] gi|99038723|gb|ABF65335.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ruegeria sp. TM1040] Length = 514 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/269 (31%), Positives = 138/269 (51%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVA----QKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA +K+ E+ + K V+ Q+V+ V + + + L P Sbjct: 38 LLEADVSLPVARDFVKKVQEQATGQAVTKSVTPGQQVVKIVHDALVETLRGDEDPGALKI 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P IL+VG+ G GKTT GKL+K++ + G KV+LA+ D +R AA+DQL + + Sbjct: 98 DNPPAPILMVGLQGSGKTTTTGKLAKRLKEKEGKKVLLASLDVYRPAAMDQLAVLGTQIG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G +A A +QA DV ++DTAGRL + LM + + V+ Sbjct: 158 VDTLPIVKGQSPVDIAKRAKQQAALGGYDVYMLDTAGRLQIDETLMKEVEDVRDVV---- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 +P L V+D TGQ A+ E F G +G+++T+MDG RGG + + P+ Sbjct: 214 --SPRETLLVVDGLTGQVAVEVAEEFDNKIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ +E F + I G D Sbjct: 272 RFVGLGEKMDAIETFEPDRIAGRILGMGD 300 >gi|257466448|ref|ZP_05630759.1| Signal recognition particle, subunit FFH/SRP54 [Fusobacterium gonidiaformans ATCC 25563] gi|315917604|ref|ZP_07913844.1| signal recognition particle protein [Fusobacterium gonidiaformans ATCC 25563] gi|313691479|gb|EFS28314.1| signal recognition particle protein [Fusobacterium gonidiaformans ATCC 25563] Length = 449 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/205 (34%), Positives = 110/205 (53%), Gaps = 6/205 (2%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P V+++ G+ G GKTT GKL+K + KV+L A D +R AAI QL++ + Sbjct: 100 PTVLMLSGLQGAGKTTFAGKLAKFLKKQNEKVLLVAADVYRPAAIKQLQVLGQQVDVAVY 159 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 E D + A ++A+ + +IIDTAGRLH + LM + +R +KRL P Sbjct: 160 AEEGHQDVLGICERALEKAKEEHATYMIIDTAGRLHIDEALM----EELRNIKRL--TRP 213 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 +L V+D+ GQ+A+ + F+ G+++TK+DG RGG + I P+ F+G Sbjct: 214 QEILLVVDSMIGQDAVNLAKSFNESLSIDGVVLTKLDGDTRGGAALSIKSVVGKPIKFIG 273 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 VGE ++D+E F + I G D Sbjct: 274 VGEKLDDIELFHPDRLVSRILGMGD 298 >gi|15645766|ref|NP_207943.1| signal recognition particle protein (ffh) [Helicobacter pylori 26695] gi|2500881|sp|P56005|SRP54_HELPY RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog gi|2314305|gb|AAD08194.1| signal recognition particle protein (ffh) [Helicobacter pylori 26695] Length = 448 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ VA+++++++ ++ + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L L +L LS + F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVL+ Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIASNALKRAKEAQFDVLL 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + ++ +L PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMQELKEVKEILN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I +P+ F+G GE I DL+ FV + + G D Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291 >gi|312079906|ref|XP_003142374.1| signal recognition particle protein [Loa loa] gi|307762464|gb|EFO21698.1| signal recognition particle protein [Loa loa] Length = 530 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 120/235 (51%), Gaps = 10/235 (4%) Query: 81 VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140 +QR ++ +EL+ K++ P KPF +P++ + VG+ G GKTT KL+ G Sbjct: 104 IQRCVF--TELM-KLVDPGVKPFQPT-KGKPNIFMFVGLQGSGKTTTCSKLAYYYQKKGW 159 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 K L DTFR+ A DQLK A + F S I D +A + + +++++D Sbjct: 160 KTCLICADTFRAGAFDQLKQNATKARIPFYGSYIEMDPVTIAASGVDKFKEDGFEIIVVD 219 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 T+GR + L +M++V ++P+ +++ V+DA+ GQ Q F Sbjct: 220 TSGRHKQEASLFE---EMLQVSNAVNPN---NIVFVMDASIGQACEAQARAFSETVDVGS 273 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+D A+GGG + V PV F+G GE I+D EPF K F + G D Sbjct: 274 VIITKLDSHAKGGGALSAVAATHSPVIFIGTGEHIDDFEPFEVKPFVQKLLGMGD 328 >gi|30580515|sp|Q8MZJ6|SRP54_GEOCY RecName: Full=Signal recognition particle 54 kDa protein; Short=SRP54 gi|20750404|gb|AAM23234.1| signal recognition particle 54 kD protein [Geodia cydonium] Length = 499 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 106/204 (51%), Gaps = 6/204 (2%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 101 NVIMFVGLQGSGKTTTCTKLAYHYQKKGWKTCLVCADTFRAGAFDQLKQNATKARVPFYG 160 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 S D +A E ++ + +V+I+DT+GR L +M++V + +DP Sbjct: 161 SYTEMDPVVIAQEGVEKFKEDSFEVIIVDTSGRHKQEESLFE---EMLQVSQAIDPD--- 214 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 +++ V+D T GQ Q F +I+TK+DG A+GGG + V + P+ F+G Sbjct: 215 NIIFVMDGTIGQACESQARAFKEKVDVASVIVTKLDGHAKGGGALSAVAATRSPIIFIGT 274 Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315 GE I+++EPF K F + + G D Sbjct: 275 GEHIDEMEPFKTKPFVSKLLGMGD 298 >gi|227202754|dbj|BAH56850.1| AT1G48900 [Arabidopsis thaliana] Length = 450 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/290 (31%), Positives = 141/290 (48%), Gaps = 19/290 (6%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQ-------KIVE-ELLTKRYAKDVSVQRVLY 86 II + L++ + E + L++SD+ + + KIV E L + K +++ ++ Sbjct: 22 IIDEKALNECLNE-ITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIF 80 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 SEL KML P KP + V++ VG+ G GKTT K + G K L Sbjct: 81 --SELC-KMLDP-GKPAFAPKKAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVC 136 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 DTFR+ A DQLK A + F S SD +A E + + D++I+DT+GR Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHK 196 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + L + ++ K P V+ V+D++ GQ A Q + F +I+TKM Sbjct: 197 QEASLFEEMRQVAEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKM 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316 DG A+GGG + V K PV F+G GE +++ E F K F + + G D+ Sbjct: 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300 >gi|332160294|ref|YP_004296871.1| signal recognition particle protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604475|emb|CBY25973.1| signal recognition particle, subunit Ffh SRP54 [Yersinia enterocolitica subsp. palearctica Y11] gi|325664524|gb|ADZ41168.1| signal recognition particle protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862670|emb|CBX72818.1| signal recognition particle protein [Yersinia enterocolitica W22703] Length = 453 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 114/212 (53%), Gaps = 13/212 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT + KL K + + K V++ + D +R AAI QL+ A Sbjct: 97 AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQAVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S++ + A +QA+ K DVLI+DTAGRLH + +M I ++ Sbjct: 157 VDFFPSDVQEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQV-------- 208 Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 HA P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ FLGVGE + LEPF ++ I G D Sbjct: 268 KPIKFLGVGEKSDALEPFHPDRVASRILGMGD 299 >gi|315656361|ref|ZP_07909250.1| signal recognition particle protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492920|gb|EFU82522.1| signal recognition particle protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 557 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 96/312 (30%), Positives = 150/312 (48%), Gaps = 25/312 (8%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +LT+ F + K K +D+ D ++ LI +D+ + V + + K Y Sbjct: 8 RLTESFKNLRKKGKLKDSDV-------DATVSDIRRALIEADVALEVVKDFTATVKEKAY 60 Query: 76 AKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129 S Q+++ V++ + +L + ++ + P V ++ G+ G GKTT+ G Sbjct: 61 GAARSEALNPAQQIVKIVNDELINILGGEDRELHFSKPGKGPTVFMLAGLQGAGKTTLAG 120 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAF 186 KL K ++ KV+L A D R A++QL+I ++ E G+ D +A A Sbjct: 121 KLGKWLAKENRKVLLVAADLQRPNAVNQLQIVGEQAGVTVFAPEPGNGVGDPVDVARRAL 180 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A DV+I+DTAGRL + LMA + IR D P VL VLDA GQ+A+ Sbjct: 181 ALASGSGYDVMIVDTAGRLGVDEELMA-QARSIR-----DEVQPDEVLFVLDAMIGQDAV 234 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 R F TG ++TK+DG ARGG + + +PV F GEG++D E F A Sbjct: 235 RTARAFQEGVDFTGAVLTKLDGDARGGAALSVRGVTGVPVLFASTGEGLDDFERFHADRM 294 Query: 307 SAVITGCLDYGE 318 ++ I LD G+ Sbjct: 295 ASRI---LDMGD 303 >gi|110635669|ref|YP_675877.1| signal recognition particle subunit FFH/SRP54 (srp54) [Mesorhizobium sp. BNC1] gi|110286653|gb|ABG64712.1| signal recognition particle subunit FFH/SRP54 (srp54) [Chelativorans sp. BNC1] Length = 522 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 114/206 (55%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT GK++K+MS+ G KV++A+ DT R AA +QL+ ++T Sbjct: 100 PVVVMMVGLQGSGKTTTSGKIAKRMSERQGKKVLMASLDTRRPAAQEQLRQLGEQTGIAT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ DV+I+DTAGR H + LMA + + R Sbjct: 160 LPIVAGQTPVDIARRAVQAAKLGGHDVVILDTAGRTHIDEPLMAEMSDIRRA------SN 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH +L V D+ TGQ+A+ + F G TGL++T+MDG RGG + + P+ + Sbjct: 214 PHEILLVADSLTGQDAVNLAKNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE ++ LE F + + I G D Sbjct: 274 GTGEKMDALEEFHPRRIADRILGMGD 299 >gi|260583609|ref|ZP_05851357.1| signal recognition particle protein [Granulicatella elegans ATCC 700633] gi|260158235|gb|EEW93303.1| signal recognition particle protein [Granulicatella elegans ATCC 700633] Length = 478 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/271 (30%), Positives = 140/271 (51%), Gaps = 17/271 (6%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + V ++ + +V Q+V+ V+E + +++ PF + Sbjct: 39 LLEADVNFKVVKDFVRKVNERALGSNVLEALSPAQQVVKIVNEELTELMGGEQSPFQFS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P V++++G+ G GKTT GKL+ ++ + +L A D +R AAIDQL+ + Sbjct: 98 PKPPTVVMMIGLQGAGKTTTAGKLASFLAKHENKRPLLVAADVYRPAAIDQLQTLGKQL- 156 Query: 167 ADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 ++ +G+D +A +A ++A + D++IIDTAGRLH + LM + + V Sbjct: 157 -NYPVFSLGTDVNPVEIARQAIERATIEGRDLVIIDTAGRLHIDEALMEELQNIKAVAN- 214 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P+ +L V+D TGQ+A+ E F+ TG+I+TK+DG RGG + I Sbjct: 215 -----PNEILLVVDVMTGQDAVNVAETFNERLDITGVILTKLDGDTRGGAALSIRSVTGK 269 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F G GE + D E F + ++ I G D Sbjct: 270 PIKFSGRGEKLEDFEIFYPERMASRILGMGD 300 >gi|170781182|ref|YP_001709514.1| signal recognition particle protein [Clavibacter michiganensis subsp. sepedonicus] gi|169155750|emb|CAQ00871.1| signal recognition particle protein [Clavibacter michiganensis subsp. sepedonicus] Length = 523 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 94/311 (30%), Positives = 153/311 (49%), Gaps = 24/311 (7%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L E ++ +L DG E+ L+ +D+ + V + + + Sbjct: 4 FGTLSDRLAETFKNLRGKGKLSAADVDGTVREIRRALLEADVALDVVKAFTASVRERALG 63 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGK 130 +VS Q+V+ V+E + +L + F+ RP VI++ G+ G GKTT+ GK Sbjct: 64 GEVSQALNPAQQVVQIVNEELVAILGGQQR--RIQFAKRPPTVIMLAGLQGAGKTTLAGK 121 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187 L K ++ G ML A D R A+ QL++ ++ E G+ + +A +A K Sbjct: 122 LGKWLAKDGHTPMLVAADLQRPNAVQQLQVVGEQAGVPVFAPEPGNGTGNPVRVAKDAMK 181 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A K+ V+IIDTAGRL ++ LM + + K DP VL V+DA GQ+A+ Sbjct: 182 HAVGKQYSVVIIDTAGRLGVDAELMK---QAADIRKATDPD---EVLFVIDAMIGQDAVA 235 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F TG++++K+DG ARGG + + P+ F GEG++D EPF + Sbjct: 236 TAKAFQDGVDFTGVVLSKLDGDARGGAALSVASVTGRPIMFASTGEGLDDFEPFHPDRMA 295 Query: 308 AVITGCLDYGE 318 + I LD G+ Sbjct: 296 SRI---LDLGD 303 >gi|152999786|ref|YP_001365467.1| signal recognition particle protein [Shewanella baltica OS185] gi|151364404|gb|ABS07404.1| signal recognition particle protein [Shewanella baltica OS185] Length = 457 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 157/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL ++ V+E L ++ L+ +D+ + V ++ V + + Sbjct: 2 FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++VS Q + V + K + ++ + + P VI++ G+ G GKTT + KL Sbjct: 62 QEVSKSLSPGQAFIKIVQSELEKSMGEANEALDL-ATQPPAVIMMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + K V++ + D +R AAI QL+ A + +F S++ +A A A+ Sbjct: 121 GKFLRERHKKSVLVVSADVYRPAAIKQLETLAQEVAVEFFPSDVSQKPIDIAKAAIAHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K +DV+I+DTAGRLH + +M I + +K P L V+DA TGQ+A + Sbjct: 181 LKFIDVVILDTAGRLHVDEAMMDEIKGLHAAVK------PIETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|149201382|ref|ZP_01878357.1| signal recognition particle protein [Roseovarius sp. TM1035] gi|149145715|gb|EDM33741.1| signal recognition particle protein [Roseovarius sp. TM1035] Length = 504 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 137/269 (50%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA+ ++ + ++ + V+ Q+V+ V + + + L P Sbjct: 38 LLEADVSLPVARDFIKTVESRATGQAVTKSVTPGQQVVKIVHDALVETLRGEGDPGALKI 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P IL+VG+ G GKTT KL+K++ D G +V++A+ DT R AA++QL I + Sbjct: 98 DNPPAPILMVGLQGSGKTTTTAKLAKRLKDREGKRVLMASLDTNRPAAMEQLAILGKQIG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G D +A A QA DV ++DTAGRLH ++ L+A + D Sbjct: 158 VDTLPIVKGEDPVQIAKRAKTQAALGGYDVYMLDTAGRLHIDAELIAQAAAV------RD 211 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+D TGQ+A+ F G TG+++T+MDG RGG + + P+ Sbjct: 212 VANPRETLLVVDGLTGQDAVNVATEFDDKIGVTGVVLTRMDGDGRGGAALSMRAITGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ LE F + I G D Sbjct: 272 RFVGLGEKMDALETFEPDRIAGRILGMGD 300 >gi|88608106|ref|YP_506423.1| signal recognition particle protein [Neorickettsia sennetsu str. Miyayama] gi|88600275|gb|ABD45743.1| signal recognition particle protein [Neorickettsia sennetsu str. Miyayama] Length = 449 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/292 (31%), Positives = 152/292 (52%), Gaps = 22/292 (7%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDV-S 89 +I+ + DD VR+ L + +D+ + V ++ + E ++ K K +S V+ V Sbjct: 21 VITEKEFDDFVRK-LRLTFLEADVSLPVTKQFIANVRESVIGKSRVKGISTPAVIGSVVK 79 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS----KKMSDAGLKVMLA 145 E + K+L S+ F + +++ VG+ GVGKTT KL+ KK ++L+ Sbjct: 80 EELVKILGGESQKFEFP-KFGKQILMFVGLQGVGKTTTAAKLALLIRKKFKK---NILLS 135 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK--QAQAKKVDVLIIDTAG 203 + D +R AA QL+I A + D V G D A+ + + DVL++DTAG Sbjct: 136 SVDIYRPAARKQLEILAKQIDVDTVPIVEGEDVDAIVKKTLDLFNNSHEGYDVLMVDTAG 195 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 R +S+LM + ++V+K + P + QVLDA GQ++L FH+ GTTG+I+ Sbjct: 196 RSQIDSVLM----EELKVIK--NRLQPSEIFQVLDAMMGQDSLNVARTFHSEIGTTGVIV 249 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +++D AR G ++ + + +P+ F G GE +NDLE F + + I G D Sbjct: 250 SRLDSDARVGSVLSVRQSVGLPIRFCGAGERVNDLEEFHPERMAGRIMGAGD 301 >gi|321462130|gb|EFX73155.1| hypothetical protein DAPPUDRAFT_325390 [Daphnia pulex] Length = 506 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 134/269 (49%), Gaps = 14/269 (5%) Query: 53 LIRSDIGVAVAQKIVEELLT----KRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWD 106 L+ SD+ + + +++ E + + A ++ +R++ ELI K++ P KP+ Sbjct: 39 LLESDVNIRLVKQLRENVKSVIDFDDMAGGLNKRRMIQSAVFKELI-KLVDPGVKPYQ-P 96 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 RP+VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + Sbjct: 97 VKGRPNVIMFVGLQGSGKTTTCTKLAYHYMKKGWKSCLVCADTFRAGAYDQLKQNATKAR 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 F S D +A E +A+ + +++DT+GR L + ++ +K Sbjct: 157 IPFYGSYTEVDPVVIAQEGVDMFKAENFEFIVVDTSGRHKQEDSLFEEMLQVSNAVK--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P +++ V+DA+ GQ Q F +I+TK+DG A+GGG + V + PV Sbjct: 214 ---PDNIIFVMDASIGQACEAQARAFKEKVDVGSVIITKLDGHAKGGGALSAVAATQSPV 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G GE I+DLE F K F + + G D Sbjct: 271 IFIGTGEHIDDLESFKTKPFISKLLGLGD 299 >gi|71755401|ref|XP_828615.1| signal recognition particle 54 kDa [Trypanosoma brucei TREU927] gi|70834001|gb|EAN79503.1| signal recognition particle 54 kDa [Trypanosoma brucei] gi|261334497|emb|CBH17491.1| signal recognition particle 54 kDa, putative [Trypanosoma brucei gambiense DAL972] Length = 487 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/282 (30%), Positives = 140/282 (49%), Gaps = 15/282 (5%) Query: 42 DDGVREELEDL---LIRSDIGV----AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIH 93 +D V+E L ++ L+++D+ V + Q + E+ A ++ +++L V I Sbjct: 25 EDDVKEFLNEVARALLQADVNVKTVKELQQNVRAEVAITAEAAGLNKRKMLQTAVFNGIK 84 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 KML P KPF + +++ VG+ G GKTT K + GLK L DTFR+ Sbjct: 85 KMLDPGVKPF-IPAKGKTSIVMFVGLQGSGKTTSCTKYAAYFQRKGLKTGLVCADTFRAG 143 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A DQL+ A + F S +D +A E + + +K D++I+DT+GR S L Sbjct: 144 AYDQLRQNATKAKVRFYGSLTEADPVIIAKEGVLELKKEKYDLIIVDTSGRHKQESALFE 203 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + ++ + +K P+ ++ V+ AT GQ Q F +I+TK+DG A+GG Sbjct: 204 EMKQVQQAVK------PNDIVFVMSATDGQGIEEQARQFKEKVPIGSVIVTKLDGQAKGG 257 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + V K P+ F+G GE +D E F + F + + G D Sbjct: 258 GALAAVAMTKSPIVFIGTGEHFDDFELFQPESFVSRMLGMGD 299 >gi|297380328|gb|ADI35215.1| signal recognition particle protein [Helicobacter pylori v225d] Length = 448 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ VA+++++++ ++ + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L L +L LS + F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVL+ Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + ++ +L PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMQELKEVKEILN------PHEVLYVADALSGQDGVKSASAFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I +P+ F+G GE I DL+ FV + + G D Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291 >gi|254439394|ref|ZP_05052888.1| signal recognition particle protein [Octadecabacter antarcticus 307] gi|198254840|gb|EDY79154.1| signal recognition particle protein [Octadecabacter antarcticus 307] Length = 502 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/272 (31%), Positives = 141/272 (51%), Gaps = 18/272 (6%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS--------VQRVLYDVSELIHKMLMPLSKPFN 104 L+ +D+ ++VA+ + + K + V+ V ++++D EL+H +L P Sbjct: 38 LLEADVSLSVARDFINAVQEKASGQSVTKSVTPGQQVVKIVHD--ELVH-VLQGDGDPGA 94 Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWAD 163 + P IL+VG+ G GKTT KL+K++ + G KV++A+ D R AA++QL+I Sbjct: 95 LKIDNPPAPILMVGLQGSGKTTTTAKLAKRLKERDGKKVLMASLDVNRPAAMEQLQILGA 154 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + D + G D +A A A DV I+DTAGRLH ++ L+A + V + Sbjct: 155 QIGVDTLPIVKGEDPVKIAKRAKTAAAMGGYDVYILDTAGRLHIDAELIAQAAAVRDVAQ 214 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 P L V+D TGQ+A+ F G TG+++T+MDG RGG + + Sbjct: 215 ------PRETLLVVDGLTGQDAVNVATEFDDKIGVTGVVLTRMDGDGRGGAALSMRAVTG 268 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G+GE ++ +E F A+ + I G D Sbjct: 269 KPIRFVGLGEKMDAIEEFHAERVAGRILGMGD 300 >gi|148544379|ref|YP_001271749.1| signal recognition particle subunit FFH/SRP54 (srp54) [Lactobacillus reuteri DSM 20016] gi|184153743|ref|YP_001842084.1| signal recognition particle protein [Lactobacillus reuteri JCM 1112] gi|227363196|ref|ZP_03847330.1| Sec family type I general secretory pathway protein signal recognition particle protein [Lactobacillus reuteri MM2-3] gi|325682699|ref|ZP_08162215.1| signal recognition particle protein [Lactobacillus reuteri MM4-1A] gi|148531413|gb|ABQ83412.1| signal recognition particle subunit FFH/SRP54 (srp54) [Lactobacillus reuteri DSM 20016] gi|183225087|dbj|BAG25604.1| signal recognition particle protein [Lactobacillus reuteri JCM 1112] gi|227071802|gb|EEI10091.1| Sec family type I general secretory pathway protein signal recognition particle protein [Lactobacillus reuteri MM2-3] gi|324977049|gb|EGC14000.1| signal recognition particle protein [Lactobacillus reuteri MM4-1A] Length = 481 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/280 (30%), Positives = 140/280 (50%), Gaps = 16/280 (5%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML 96 +RE + ++ L+ +D+ V + V+ + K +V Q+++ V++ + K++ Sbjct: 28 LRETMREIRLALLEADVNFKVVKDFVKTVREKAAGAEVLKGLNPAQQIVKIVNDELTKLM 87 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAI 155 + P N H P VI++VG+ G GKTT GKL+ ++ + + M A D +R AAI Sbjct: 88 GEEAVPLNK-APHIPTVIMMVGLQGAGKTTTAGKLALRLKNENHARPMFIAADVYRPAAI 146 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 QL+ AD+ D + E + AQ D +IIDTAGRL + LM + Sbjct: 147 TQLQQVADQIDVPVFEKGTDVDPVEIVREGMEVAQKNHNDYVIIDTAGRLQIDEQLMDEL 206 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 + ++ P+ +L V+D+ TGQNA+ + F TG+I+TK+DG RGG Sbjct: 207 ANIKELVN------PNEILLVIDSMTGQNAVNTAQGFDDKLDITGVILTKLDGDTRGGAA 260 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+G GE + DL+ F ++ I G D Sbjct: 261 MSIRAVTGKPIKFVGEGEKMEDLDVFHPDRMASRILGMGD 300 >gi|332372642|gb|AEE61463.1| unknown [Dendroctonus ponderosae] Length = 505 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/279 (29%), Positives = 139/279 (49%), Gaps = 14/279 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLT----KRYAKDVSVQRVLYDV--SELIHKML 96 +G+ +E+ L+ +D+ V + + + E + A ++ +R++ EL+ K++ Sbjct: 29 NGMLKEICAALLEADVNVKMVKALRENVRAVIDFDEMAGGLNKRRMIQSAVFKELV-KLV 87 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 P KPF +P++I+ VG+ G GKTT K++ K L DTFR+ A D Sbjct: 88 DPSVKPFQ-PVKGKPNIIMFVGLQGSGKTTTCTKMAYYYQKKNWKSCLVCADTFRAGAYD 146 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 Q+K + F S D +A + + + + +++I+DT+GR L + Sbjct: 147 QVKQNCTKARIPFYGSYTEVDPVIIAQDGVEMFKKEHFEIIIVDTSGRHKQEDSLFEEML 206 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 ++ +K P +++ V+DAT GQ Q F A +I+TK+DG A+GGG + Sbjct: 207 QVSNAVK------PDNIVFVMDATIGQACEEQARAFKAKVDVGSVIITKLDGHAKGGGAL 260 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 V P+ F+GVGE I+DLEPF K F + + G D Sbjct: 261 SAVAATSSPIIFIGVGEHIDDLEPFKTKPFISKLLGMGD 299 >gi|283798055|ref|ZP_06347208.1| signal recognition particle protein [Clostridium sp. M62/1] gi|291074194|gb|EFE11558.1| signal recognition particle protein [Clostridium sp. M62/1] gi|295091808|emb|CBK77915.1| signal recognition particle protein [Clostridium cf. saccharolyticum K10] Length = 452 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 89/305 (29%), Positives = 153/305 (50%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRLDD-----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F S + KL+ ++ RL + G+RE ++ L+ +D+ V ++ + + + Sbjct: 3 FESLADKLQNVFKNLTGKGRLSEADVKAGLRE-VKMALLEADVSFKVVKQFINSVQERAV 61 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +DV Q V+ V+E + K++ ++ VIL+ G+ G GKTT K Sbjct: 62 GQDVLNGLNPGQMVIKIVNEELVKLMGSEMTEIALRPANEITVILMAGLQGAGKTTTTAK 121 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 ++ K+ G +LAA D +R AAI+QLKI ++ G +A A + A Sbjct: 122 IAGKLKAKGRSPLLAACDIYRPAAIEQLKINGEKQGVPVFSMGTGHKPVNIAKAAIEHAA 181 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 +V+I+DTAGRLH + +M +++ + + + + L ++DA TGQ+A+ Sbjct: 182 KNGNNVVILDTAGRLHIDEDMM---NELVEIKENV---SVDQTLLIVDAMTGQDAVNVAG 235 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 MF+ G G+I+TKMDG RGG + I P+ ++G+GE ++DLE F ++ I Sbjct: 236 MFNDKIGIDGVILTKMDGDTRGGAALSIKAVTGKPILYVGMGEKLSDLEQFYPDRMASRI 295 Query: 311 TGCLD 315 G D Sbjct: 296 LGMGD 300 >gi|84998408|ref|XP_953925.1| signal recognition particle 54kDa protein 2 [Theileria annulata] gi|65304923|emb|CAI73248.1| signal recognition particle 54kDa protein 2, putative [Theileria annulata] Length = 495 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/273 (31%), Positives = 134/273 (49%), Gaps = 22/273 (8%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS----------VQRVLYDVSELIHKMLMPLSKP 102 L+ +D+ V + K+ E + KR K+ S +Q+++ D EL++ ML KP Sbjct: 39 LLMADVNVKLVHKLKENV--KRLNKNNSDMIGANKRRYLQKIVVD--ELVN-MLTTEKKP 93 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 F R +VI+ VG+ G GKTT K + G + L DTFR+ A DQLK A Sbjct: 94 FEPK-KGRCNVIMFVGLQGAGKTTSCTKFAYHYQRKGWRTALICADTFRAGAFDQLKQNA 152 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 + F S ++ A +A + + + +K D++I+DT+GR L + K+I Sbjct: 153 AKVKISFYGSYSEANPAKVAADGVARFKEEKYDMIIVDTSGRHKQEDALFDEM-KLI--- 208 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 D P V+ V+D+ GQ Q F+ +I+TK+DG A+GGG + V Sbjct: 209 --YDAVQPDEVVFVMDSHIGQACYDQASAFNKAVDVGSVIITKLDGHAKGGGALSAVSAT 266 Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE +D EPF K F + + G D Sbjct: 267 NSPIIFIGTGEHFDDFEPFDPKSFISRLLGFGD 299 >gi|284928857|ref|YP_003421379.1| signal recognition particle subunit FFH/SRP54 (srp54) [cyanobacterium UCYN-A] gi|284809316|gb|ADB95021.1| signal recognition particle subunit FFH/SRP54 (srp54) [cyanobacterium UCYN-A] Length = 494 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/193 (37%), Positives = 103/193 (53%), Gaps = 10/193 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VIL+VG+ G GKTT KL+ + ++ A D +R AAIDQLK + + Sbjct: 100 PTVILMVGLQGTGKTTATAKLAHYLKKQKQSCLMVAADIYRPAAIDQLKTLGQQI--EVP 157 Query: 171 CSEIGS--DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 E+G+ + +A + +A+ + DV+IIDTAGRL + G M+ + + + Sbjct: 158 VFELGNQENPVNIALQGVNKAKEIEADVVIIDTAGRLQIDQ------GMMLELTQIKESI 211 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 PH L V+DA TGQ A + FH TG I+TKMDG RGG + + P+ F Sbjct: 212 NPHDTLLVVDAMTGQEAANLAQTFHEKIKITGTILTKMDGDTRGGAALSVRKVSGQPIKF 271 Query: 289 LGVGEGINDLEPF 301 +GVGE I L+PF Sbjct: 272 VGVGEKIEALQPF 284 >gi|67924644|ref|ZP_00518055.1| Signal recognition particle protein [Crocosphaera watsonii WH 8501] gi|67853517|gb|EAM48865.1| Signal recognition particle protein [Crocosphaera watsonii WH 8501] Length = 488 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/281 (31%), Positives = 141/281 (50%), Gaps = 29/281 (10%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85 D I+ + D ++E + L+ +D+ + V + + E+ +V + +++ Sbjct: 20 DKITEANMQDALKE-VRRALLEADVNLQVVKTFIAEVEKAAIGAEVIAGVNPGQQLIKIV 78 Query: 86 YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 YD EL+ M +PL++ P VIL+ G+ G GKTT KLS + Sbjct: 79 YD--ELVKVMGESNVPLAQA-----EKSPTVILMAGLQGTGKTTATAKLSLYLRKQERTC 131 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIID 200 ++ A D +R AAIDQLK ++ + E+G+ A +A + +A+ +D +IID Sbjct: 132 LMVATDIYRPAAIDQLKTLGEQI--EVPVFELGTQANPVDIATQGVAKAKEMGIDTVIID 189 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL + +M ++ RV K ++P L V+DA TGQ A FH G TG Sbjct: 190 TAGRLQIDEEMML---ELARVKKAVNPD---DTLLVVDAMTGQEAANLTRTFHEQIGVTG 243 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 I+TKMDG RGG + + P+ F+GVGE + L+PF Sbjct: 244 AILTKMDGDTRGGAALSVRQISGQPIKFVGVGEKVEALQPF 284 >gi|317152476|ref|YP_004120524.1| signal recognition particle protein [Desulfovibrio aespoeensis Aspo-2] gi|316942727|gb|ADU61778.1| signal recognition particle protein [Desulfovibrio aespoeensis Aspo-2] Length = 501 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 93/305 (30%), Positives = 151/305 (49%), Gaps = 18/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRLD-DGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S +L +RLD D +RE L ++ L+ +D+ V + V+++ K A Sbjct: 2 FESLQERLGNAFQKFKGQKRLDEDNIREGLREVRLALLEADVNFKVVKGFVDQV--KERA 59 Query: 77 KDVSVQRVL---YDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 V + L + ++++ L+ L + D +P +++VG+ G GKTT GK+ Sbjct: 60 LGEEVMKGLDPGAQIIKIVNDELVELLGGEQQGLDLVAKPLKVMMVGLQGSGKTTSSGKI 119 Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 + + + G K L D +R AAIDQL A + S G + + +A +A Sbjct: 120 ALFLRKNHGRKPYLVPADVYRPAAIDQLNTLARQLDVPVYPSTTGMNPVDICRDAMAKAG 179 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 D+++ DTAGRLH + LM + + + +P +L V DA TGQ+A+ E Sbjct: 180 ELGCDLILFDTAGRLHIDETLMDELENIKQAC------SPQEILFVADAMTGQDAVTVAE 233 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ G TG+++TKMDG ARGG + I PV F+G+GE +++LE F ++ I Sbjct: 234 AFNNKLGITGVVLTKMDGDARGGAALSIKSVTGRPVKFVGMGEKLSELELFHPDRIASRI 293 Query: 311 TGCLD 315 G D Sbjct: 294 LGMGD 298 >gi|170025580|ref|YP_001722085.1| signal recognition particle protein [Yersinia pseudotuberculosis YPIII] gi|169752114|gb|ACA69632.1| signal recognition particle protein [Yersinia pseudotuberculosis YPIII] Length = 453 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/209 (37%), Positives = 113/209 (54%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT + KL K + + K V++ + D +R AAI QL+ A Sbjct: 97 AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKQKKKVLIVSADVYRPAAIKQLETLAQGVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S+ + A +QA+ K DVLI+DTAGRLH + +M I ++ +K Sbjct: 157 IDFFPSDAQEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I P+ Sbjct: 214 ---PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 FLGVGE + LEPF ++ I G D Sbjct: 271 KFLGVGEKSDALEPFHPDRIASRILGMGD 299 >gi|167385123|ref|XP_001737215.1| signal recognition particle 54 kDa protein [Entamoeba dispar SAW760] gi|165900054|gb|EDR26502.1| signal recognition particle 54 kDa protein [Entamoeba dispar SAW760] Length = 487 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/275 (29%), Positives = 142/275 (51%), Gaps = 14/275 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYD--VSELIHKMLMPLS 100 +E+E L+ D+ +++V + K ++D+ ++++ D ELI+ ++ P + Sbjct: 33 KEIETSLLGEDVNPIFIRQMVNNIKKKINSEDIPDGIDKRKLIKDSVFEELIN-LVDPKT 91 Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 +PF + V+++VG+ G GKTT I KL+ + G K + DTFR+ A +QL++ Sbjct: 92 EPFKPK-KGKTCVLMMVGLQGAGKTTTITKLALYYKNRGYKPAVVGADTFRAGAYEQLQM 150 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A R F + SD +A E + + +K D++++DT+GR + L + + Sbjct: 151 NAKRAGVPFFGIKEESDPVKVASEGVRTFRKEKNDIILVDTSGRHKQDKELFKEMQSVRD 210 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 +K P S++ V+D GQ A Q + F +I+TK+DG + GGG + V Sbjct: 211 AIK------PDSIIFVMDGAIGQAAFGQAKAFKDAVEVGSVIITKLDGHSNGGGALSAVA 264 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 K P+ F+G GE +N++E F A+ F + G D Sbjct: 265 ATKSPIIFIGTGEKVNEIEEFDAESFVRKLLGMGD 299 >gi|224532367|ref|ZP_03672997.1| signal recognition particle protein [Borrelia burgdorferi WI91-23] gi|225549895|ref|ZP_03770856.1| signal recognition particle protein [Borrelia burgdorferi 118a] gi|224512674|gb|EEF83045.1| signal recognition particle protein [Borrelia burgdorferi WI91-23] gi|225369354|gb|EEG98806.1| signal recognition particle protein [Borrelia burgdorferi 118a] Length = 444 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/276 (31%), Positives = 141/276 (51%), Gaps = 15/276 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF--- 103 E +++ L+ +D+ + V ++ + ++ + +K V V R + S+ I + L K Sbjct: 32 EIIKNSLVDADVNLRVIRRFLNSIIEE--SKGVKVLRGIDPKSQFIKIVNDNLVKFLGGK 89 Query: 104 NWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 N++ S P IL++G+ G GKTT KLS K+ KV+L A DTFR+AA++QLK Sbjct: 90 NYELSLHPANKQSYILMLGLQGSGKTTTCVKLSLKLKKENRKVLLVAADTFRAAAVEQLK 149 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 I + E D + + K A++ D +I+DT GRL S+L+ I K+ Sbjct: 150 ILGGQVGVPVFSIEGEKDPIKIVKASMKFAESNFFDSVIVDTRGRLEIESLLVEEIKKIK 209 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 +L+ P + V+D+ GQ A+ + F+ G TG I +K D RGG ++ Sbjct: 210 GILR------PAETILVVDSMMGQVAVNIAKEFNENVGLTGAIFSKFDSDTRGGAVLSFK 263 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P+ F+GVGE I DL+ F + ++ I G D Sbjct: 264 SICAVPIKFIGVGEKIEDLDSFYPERIASRILGMGD 299 >gi|91794106|ref|YP_563757.1| signal recognition particle protein [Shewanella denitrificans OS217] gi|91716108|gb|ABE56034.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella denitrificans OS217] Length = 457 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 156/308 (50%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL DD ++E L ++ L+ +D+ + V ++ V + + Sbjct: 2 FENLTDRLSRTLKNISGRGRLTDDNIKETLREVRMALLEADVALPVVREFVNSVKERAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++VS Q + V + K + ++ + + P VI++ G+ G GKTT + KL Sbjct: 62 QEVSKSLSPGQAFIKIVQSELEKAMGESNEALDL-AAIPPAVIMMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + K V++ + D +R AAI QL+ A +F S++ +A A A+ Sbjct: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLAAEVEVEFFPSDVSQKPLDIAKAAIAHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K +DV+I+DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 181 LKFIDVVIVDTAGRLHVDEAMMDEIKQL---------HASINPVETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF + Sbjct: 232 TAKAFNEALPLTGVILTKVDGDARGGAALSIRNITGKPIKFLGVGEKTDALEPFHPDRIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|260429470|ref|ZP_05783447.1| signal recognition particle protein [Citreicella sp. SE45] gi|260420093|gb|EEX13346.1| signal recognition particle protein [Citreicella sp. SE45] Length = 507 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/286 (31%), Positives = 148/286 (51%), Gaps = 21/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEEL--------LTKRYAKDVSVQRVLYDVSE 90 +D VR L ++ L+ +D+ + VA++ ++ + +TK V ++++D E Sbjct: 24 EDDVRTALREVRVALLEADVSLPVARQFIKAVEKKATGAAVTKSVTPGQQVVKIVHD--E 81 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDT 149 LI +L +P P IL+VG+ G GKTT KL++++ + KV++A+ D Sbjct: 82 LIA-VLAGEGEPGALRIDSPPAPILMVGLQGGGKTTTTAKLARRLKERDHKKVLMASLDV 140 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 R AA++QL+I + D + G D A+A A QA DV ++DTAGRL + Sbjct: 141 NRPAAMEQLEILGKQIGVDTLPIVKGEDPVAIAKRAKTQAALGGYDVYMLDTAGRLSIDE 200 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 LMA + + +R D P L V+D TGQ+A+ E F + G TG+++T+MDG Sbjct: 201 ELMAQV-EAVR-----DVANPRETLLVVDGLTGQDAVHTAENFDSRIGITGVVLTRMDGD 254 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + + P+ F+G+GE ++ LE F + I G D Sbjct: 255 GRGGAALSMRAVTGKPIKFVGLGEKMDALETFEPDRVAGRILGMGD 300 >gi|225548907|ref|ZP_03769884.1| signal recognition particle protein [Borrelia burgdorferi 94a] gi|225370510|gb|EEG99946.1| signal recognition particle protein [Borrelia burgdorferi 94a] Length = 444 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/276 (30%), Positives = 141/276 (51%), Gaps = 15/276 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF--- 103 E +++ L+ +D+ + V ++ + ++ + +K V V R + S+ I + L K Sbjct: 32 EIIKNSLVDADVNLRVIRRFLNSIIEE--SKGVKVLRGIDPKSQFIKIVNDNLVKFLGGK 89 Query: 104 NWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 N++ S P I+++G+ G GKTT KLS K+ KV+L A DTFR+AA++QLK Sbjct: 90 NYELSLHPTNKQSYIIMLGLQGSGKTTTCAKLSLKLKKENRKVLLVAADTFRAAAVEQLK 149 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 I + E D + + K A++ D +I+DT GRL S+L+ I K+ Sbjct: 150 ILGGQVGVPVFSIEGEKDPIKIVKASMKFAESNFFDSVIVDTRGRLEIESLLVEEIKKIK 209 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 +L+ P + V+D+ GQ A+ + F+ G TG I +K D RGG ++ Sbjct: 210 GILQ------PAETILVVDSMMGQVAVNIAKEFNENVGLTGAIFSKFDSDTRGGAVLSFK 263 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P+ F+GVGE I DL+ F + ++ I G D Sbjct: 264 SICAVPIKFIGVGEKIEDLDSFYPERIASRILGMGD 299 >gi|257462434|ref|ZP_05626847.1| Signal recognition particle, subunit FFH/SRP54 [Fusobacterium sp. D12] gi|317060096|ref|ZP_07924581.1| signal recognition particle protein [Fusobacterium sp. D12] gi|313685772|gb|EFS22607.1| signal recognition particle protein [Fusobacterium sp. D12] Length = 449 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 111/208 (53%), Gaps = 6/208 (2%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P V+++ G+ G GKTT GKL+K + +V+L A D +R AAI QL++ ++ Sbjct: 97 SKNPTVLMLSGLQGAGKTTFAGKLAKFLKKQNERVLLVAADVYRPAAIKQLQVLGEQVEV 156 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 E D + A ++A+ + +IIDTAGRLH + LM + K I+ L R Sbjct: 157 SVYAEEGHQDVLGICERALEKAKEEHDTYMIIDTAGRLHIDETLMEEL-KNIKRLTR--- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ GQ+A+ + F+ G+++TK+DG RGG + I P+ Sbjct: 213 --PQEILLVVDSMIGQDAVNLAKSFNENLSIDGVVLTKLDGDTRGGAALSIKSVVGKPIK 270 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+GVGE ++D+E F + I G D Sbjct: 271 FIGVGEKLDDIELFHPDRLVSRILGMGD 298 >gi|259417053|ref|ZP_05740972.1| signal recognition particle protein [Silicibacter sp. TrichCH4B] gi|259345959|gb|EEW57773.1| signal recognition particle protein [Silicibacter sp. TrichCH4B] Length = 519 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/269 (31%), Positives = 137/269 (50%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVA----QKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA +K+ E+ + K V+ Q+V+ V + + L P Sbjct: 43 LLEADVSLPVARDFVKKVQEQATGQAVTKSVTPGQQVVKIVHDALVDTLRGEDDPGALKI 102 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P IL+VG+ G GKTT GKL+K++ + G KV+LA+ D +R AA+DQL + + Sbjct: 103 DSPPAPILMVGLQGSGKTTTTGKLAKRLKEKEGKKVLLASLDVYRPAAMDQLAVLGTQIG 162 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G +A A +QA DV ++DTAGRL + +LM + + V+ Sbjct: 163 VDTLPIVKGQTPVDIAKRAKQQAALGGYDVYMLDTAGRLQIDEVLMKEVEDVRDVV---- 218 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 +P L V+D TGQ A+ E F G +G+++T+MDG RGG + + P+ Sbjct: 219 --SPRETLLVVDGLTGQVAVEVAEEFDNKIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 276 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ +E F + I G D Sbjct: 277 RFVGLGEKMDAIETFEPDRIAGRILGMGD 305 >gi|308177268|ref|YP_003916674.1| signal recognition particle protein Ffh [Arthrobacter arilaitensis Re117] gi|307744731|emb|CBT75703.1| signal recognition particle protein Ffh [Arthrobacter arilaitensis Re117] Length = 521 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 94/316 (29%), Positives = 151/316 (47%), Gaps = 28/316 (8%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L ++ RL DG E+ L+ +D+ V V + V ++ + Sbjct: 2 FNSLSDRLTATFKNLRGKGRLTEADIDGTAREIRRALLDADVAVPVVRGFVAQVKERALG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L ++ N + P VI++ G+ G GKTT+ GKL Sbjct: 62 AEVSESLNPGQQVVKIVNEELVGILGGETRRLNL-AKNPPTVIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------SDAAALA 182 +K + G ML A D R A+ QL+I +R G D +A Sbjct: 121 AKHLKAEGHTPMLVACDLQRPNAVKQLQINGERAGVPVYAPHPGVSSEFDTPTGDPVTVA 180 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 + +A+AK D++I+DTAGRL ++ +MA + + P VL V+DA G Sbjct: 181 RDGVAEAKAKLHDIVIVDTAGRLGVDTEMMAQAANIRAAIN------PDEVLFVIDAMIG 234 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 Q+A+ + FH TG++++K+DG ARGG + + PV F GE ++D E F Sbjct: 235 QDAVNTAQAFHEGVDFTGVVLSKLDGDARGGAALSVASVTGKPVMFASTGENLDDFEIFH 294 Query: 303 AKDFSAVITGCLDYGE 318 ++ I LD G+ Sbjct: 295 PDRMASRI---LDMGD 307 >gi|222150100|ref|YP_002551057.1| signal recognition particle protein [Agrobacterium vitis S4] gi|221737082|gb|ACM38045.1| signal recognition particle protein [Agrobacterium vitis S4] Length = 526 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 114/206 (55%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GK++K+++D K V++A+ DT R AA +QL+ +T D Sbjct: 100 PVVIMMVGLQGSGKTTTTGKIAKRLTDRDRKKVLMASLDTRRPAAQEQLRQLGVQTGVDT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + +G +A A + A+ DV+I+DTAGR H + LM + + + K Sbjct: 160 LPIIVGQSPTDIASRAVQAAKLGGHDVVILDTAGRTHIDEPLMVEMADIKKNAK------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH +L V DA TGQ+A+ F G TGL++T+MDG RGG + + P+ + Sbjct: 214 PHEILLVADALTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE + +L+ F + + I G D Sbjct: 274 GVGEKMTELDEFHPRRIADRILGMGD 299 >gi|212639591|ref|YP_002316111.1| signal recognition particle GTPase [Anoxybacillus flavithermus WK1] gi|212561071|gb|ACJ34126.1| Signal recognition particle GTPase [Anoxybacillus flavithermus WK1] Length = 446 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/210 (34%), Positives = 114/210 (54%), Gaps = 8/210 (3%) Query: 108 SHRPH-VILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRT 165 S+RP V+++VG+ G GKTT GKL+ + K +L A D +R AAI QL+ + Sbjct: 97 SNRPPTVVMMVGLQGAGKTTTTGKLANLLRKKHNRKPLLVAADIYRPAAIKQLETLGKQL 156 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + +A +A +A+ + D ++IDTAGRLH + LM + ++ V K Sbjct: 157 NIPVFSLGDQVSPVEIAKQAIAKAKEEHYDYVLIDTAGRLHIDEALMDELKQIKEVTK-- 214 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P + V+DA TGQ+A+ + F+ G TG+I+TK+DG RGG + I P Sbjct: 215 ----PDEIFLVVDAMTGQDAVNVAQSFNEQLGLTGVILTKLDGDTRGGAALSIKAVTNTP 270 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F+G+GE ++ LEPF + ++ I G D Sbjct: 271 IKFVGMGEKLDALEPFHPERMASRILGMGD 300 >gi|255082746|ref|XP_002504359.1| type II secretory pathway family [Micromonas sp. RCC299] gi|226519627|gb|ACO65617.1| type II secretory pathway family [Micromonas sp. RCC299] Length = 512 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/283 (29%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 43 DGVREELEDLLIRSDIGVA----VAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKML 96 D +E+ L+++D+ V + + IV+++ + A ++ +++L +EL++ ML Sbjct: 29 DACLKEVTKALLQADVNVQYVVQMKKNIVKQVNIQELAAGLNARKLLEKAVFNELVN-ML 87 Query: 97 MPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 F +P+V++ VG+ G GKTT K + G K L DTFR+ Sbjct: 88 EGGGAEVKEKFVPKKGKPNVVMFVGLQGCGKTTTCTKYAYHFQKKGYKPALVCADTFRAG 147 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A DQLK A + F S +D A +A + ++ + +K D++I+DT+GR L Sbjct: 148 AFDQLKQNATKARIPFYGSYTETDPAKIAADGVERFKDEKNDLIIVDTSGRHKQEDSLFE 207 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + ++ ++ P + V+D++ GQ A Q F A +I+TK+DG A+GG Sbjct: 208 EMRQVAAAVQ------PDMTIFVMDSSIGQAAQDQARAFKATVDVGSVIITKLDGHAKGG 261 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316 G I V K P+ F+G GE I++ E F K F + + G D+ Sbjct: 262 GAISAVAATKSPIAFIGTGEHIDEFEAFDTKPFVSRLLGLGDW 304 >gi|42543564|pdb|1RJ9|B Chain B, Structure Of The Heterodimer Of The Conserved Gtpase Domains Signal Recognition Particle (Ffh) And Its Receptor (Ftsy) Length = 300 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 92/309 (29%), Positives = 143/309 (46%), Gaps = 28/309 (9%) Query: 21 FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S +L+E I + R+ + E+ L+ +D+ + V + VE + + Sbjct: 2 FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALG 61 Query: 77 KDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 K V + +L V E + + L +P+ K N F +VG+ G GKTT Sbjct: 62 KQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWF--------LVGLQGSGKTT 113 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL+ G + +L A DT R AA +QL++ ++ + G ++ Sbjct: 114 TAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 ++A+ + D++++DTAGRL + LM + ++ VL P VL VLDA TGQ AL Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEAL 227 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G TGL++TK+DG ARGG + P+YF GV E LEPF + Sbjct: 228 SVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERL 287 Query: 307 SAVITGCLD 315 + I G D Sbjct: 288 AGRILGMGD 296 >gi|237746900|ref|ZP_04577380.1| signal recognition particle [Oxalobacter formigenes HOxBLS] gi|229378251|gb|EEO28342.1| signal recognition particle [Oxalobacter formigenes HOxBLS] Length = 455 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 88/258 (34%), Positives = 137/258 (53%), Gaps = 15/258 (5%) Query: 53 LIRSDIGVAVAQ----KIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPL-SKPFNW 105 L+ +D+ + V + K+ E+ L K +S + L V EL + M L K Sbjct: 38 LLEADVALPVVKNFIGKVREKALGKEVMDSLSPGQALVGVVQQELANIMGADLGEKSSRL 97 Query: 106 DFSHRPH-VILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 +F+ +P VIL+ G+ GVGKTT +GKL++ + + KV+ + D +R AAI QL+ + Sbjct: 98 NFATQPPAVILMAGLQGVGKTTTVGKLARYLRQEKKKKVLTVSTDVYRPAAIKQLETVSG 157 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 ++ ADF +I A+A A A+ DVLI+DTAGRL + +M I + + L Sbjct: 158 QSGADFFQPDISEQPVAIARAALDHARRHFYDVLIVDTAGRLGIDEQMMQEISGLHQAL- 216 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 +P L V+DA GQ+A+ F+ TG+++TK+DG ARGG + + Sbjct: 217 -----SPIETLFVVDAMLGQDAINVARSFNEALPLTGIVLTKLDGDARGGAALSVRHITG 271 Query: 284 IPVYFLGVGEGINDLEPF 301 PV F+GV E ++ LE F Sbjct: 272 KPVKFVGVSEKLDGLEEF 289 >gi|269860608|ref|XP_002650024.1| signal recognition particle receptor alpha subunit [Enterocytozoon bieneusi H348] gi|220066575|gb|EED44052.1| signal recognition particle receptor alpha subunit [Enterocytozoon bieneusi H348] Length = 405 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/202 (35%), Positives = 111/202 (54%), Gaps = 19/202 (9%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR----- 164 +P V VGVNGVGK+T + K++K + + L V +AA DTFR+ AI+QLK + D+ Sbjct: 196 KPFVFCFVGVNGVGKSTSVAKMTKWLLEHKLSVFIAACDTFRAGAIEQLKTYVDQFITSG 255 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + F S D A +A A +A DV++IDTAGR+HNN +LM+ + K+IR+ Sbjct: 256 YNVGFYKSGYNKDDAIVAKTAIAKAHENNYDVVLIDTAGRMHNNGMLMSSLSKIIRM--- 312 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT-------GLIMTKMDGTARG-GGLI 276 + P ++ V +A TG ++L VE F+ +I+TK+D + G + Sbjct: 313 ---NTPDHIVYVGEALTGNDSLNFVEEFNKYISNAQSGRIIDSIILTKIDTVDKKLGQIF 369 Query: 277 PIVVTHKIPVYFLGVGEGINDL 298 + + P+ FLG G+ +DL Sbjct: 370 NLTFKAQAPILFLGCGQTNSDL 391 >gi|148244704|ref|YP_001219398.1| signal recognition particle, subunit SRP54 [Candidatus Vesicomyosocius okutanii HA] gi|146326531|dbj|BAF61674.1| signal recognition particle, subunit SRP54 [Candidatus Vesicomyosocius okutanii HA] Length = 466 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/197 (38%), Positives = 116/197 (58%), Gaps = 11/197 (5%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P +I+V G+ G GKTT + K++ + KV++ + D +R AAI+QL++ + + Sbjct: 97 TQPPAIIMVAGLQGAGKTTSVAKIAFYLKQRENKKVLVVSADVYRPAAIEQLEVLSKQIE 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S I + + A + AQ + DVL++DTAGRLH + +M I K+++ K++D Sbjct: 157 VDFFPSTINDKPSDIVANAKRYAQKQFFDVLLVDTAGRLHIDEQMMNEI-KILQ--KKVD 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI-- 284 P L V+D+ TGQ+A+ ++F TG+I+TK DG ARGG + V H I Sbjct: 214 PI---ETLFVIDSMTGQDAVHTAKVFSNALPLTGVILTKTDGDARGGAALS--VRHIIGK 268 Query: 285 PVYFLGVGEGINDLEPF 301 P+ FLGVGE I+ LE F Sbjct: 269 PIKFLGVGEKIDALELF 285 >gi|32490997|ref|NP_871251.1| hypothetical protein WGLp248 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166203|dbj|BAC24394.1| ffh [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 446 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/286 (31%), Positives = 148/286 (51%), Gaps = 22/286 (7%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI--- 92 ++S ++D +R+ + L+ +D+ + V QK ++E+ K+ + D + L E I Sbjct: 23 LTSENINDTLRQ-VRIALLEADVALVVVQKFIQEI--KKISLDKKINNYLTPGQEFIKIV 79 Query: 93 HKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149 K L+ + SK N +F VI ++G+ G GKTT GKL+K + + K V+ + D Sbjct: 80 QKELIKIIGSKNNNLNFCSGRSVIFLIGLQGSGKTTTTGKLAKYLKEKNKKKVLTVSSDV 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK--VDVLIIDTAGRLHN 207 +R AA QL++ + + D SE + YE K A K DVL+IDTAG H Sbjct: 140 YRPAAQKQLELVSKSANVDCFLSE---NLYKTPYEIVKSAMNKSSLYDVLLIDTAGFSHT 196 Query: 208 NSILMAGIGKMIRVLKRLDP-HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 N KMI+ ++ L +P L ++D+ GQ+++ ++ F+ TG+I+TK+ Sbjct: 197 NK-------KMIKEIQLLQSISSPSETLFIVDSMMGQDSINSIKTFNEKFSLTGVILTKL 249 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 DG +RGG + I P+ F+G GE I+ LE F + S I G Sbjct: 250 DGDSRGGIALSIKYITGKPIKFIGTGEKIDTLEIFSPEKLSKKILG 295 >gi|296283450|ref|ZP_06861448.1| signal recognition particle protein [Citromicrobium bathyomarinum JL354] Length = 495 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/274 (33%), Positives = 142/274 (51%), Gaps = 18/274 (6%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSK-----P 102 L+ +D+ + VA+ +E + K + V SV Q+V+ V++ + ML P Sbjct: 38 LLEADVALPVARDFIERVTEKAVGEAVLKSVTPGQQVVKIVNDELVAMLGGSDSEDGHVP 97 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIW 161 D + P VI++VG+ G GKTT KL K + + G K M+A+ D R AA +QL + Sbjct: 98 LTLD-AKPPVVIMMVGLQGSGKTTSTAKLGKLIREKHGKKAMMASLDVNRPAAQEQLAVL 156 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 ++ D + G +A A + A+ + VDV+++DTAGRLH + LMA + + V Sbjct: 157 GEQAQVDTLPIVEGQQPVDIARRALESAKLRNVDVVLLDTAGRLHVDEALMAEMKAVASV 216 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 P VL V+D+ TGQ+A+ + F TG+I+T+MDG ARGG + + Sbjct: 217 ------ATPTEVLLVVDSLTGQDAVNVAQSFSDEVPLTGVILTRMDGDARGGAALSMRAV 270 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F GVGE ++ LE F + + I G D Sbjct: 271 TGKPIKFAGVGEKLDALEAFHPRRVAERILGMGD 304 >gi|224534518|ref|ZP_03675094.1| signal recognition particle protein [Borrelia spielmanii A14S] gi|224514195|gb|EEF84513.1| signal recognition particle protein [Borrelia spielmanii A14S] Length = 444 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/287 (30%), Positives = 149/287 (51%), Gaps = 16/287 (5%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95 I+ + + + V E +++ L+ +D+ + V ++ + ++ + +K V V R + S+ I + Sbjct: 22 INEKNITEAV-EIIKNSLVDADVNLRVVRRFLNSIIEE--SKGVKVLRGIDPKSQFIKIV 78 Query: 96 LMPLSKPF---NWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 L K N++ S P IL++G+ G GKTT KLS ++ KV+L A D Sbjct: 79 NDNLVKFLGGKNYELSLHPINKQSYILMLGLQGSGKTTTSVKLSLRLKKENRKVLLVAAD 138 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+AA++QLKI + E D + + K A+++ D +I+DT GRL Sbjct: 139 TFRAAAVEQLKILGSQIGVPVFSLEGEKDPIKIVKASMKFAKSEFFDSVIVDTRGRLEVE 198 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 S+L+ I K+ +L+ P + V+D+ GQ A+ + F+ G TG I +K D Sbjct: 199 SLLVEEIKKIKGILQ------PTETILVVDSMMGQVAVNIAKEFNENVGLTGAIFSKFDS 252 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG ++ ++P+ F+GVGE I DL+ F + ++ I G D Sbjct: 253 DTRGGAILSFKSICEVPIKFVGVGEKIEDLDSFYPERIASRILGMGD 299 >gi|15622349|dbj|BAB66341.1| 356aa long hypothetical signal recognition particle protein [Sulfolobus tokodaii str. 7] Length = 356 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 12/209 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P+VI++VGV G GKTT GKL+ G KV L A D +R AA DQL + + Sbjct: 6 PYVIMLVGVQGSGKTTTAGKLALFYKKKGYKVGLVAADVYRPAAYDQLVQIGKQINVPVY 65 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH-- 228 +DA +A ++ ++K D++I+DTAGR G G+ +++L+ + Sbjct: 66 GEPNNTDAVGIAKRGVEKFLSEKYDIIIVDTAGR--------HGYGEEVKLLEEMKNMYS 117 Query: 229 --APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P V+ V+DA+ GQ A FH + +I+TKMDGTA+GGG + V + Sbjct: 118 EIKPDEVILVIDASIGQKAYDLASRFHQASPIGSIIVTKMDGTAKGGGALSAVAATGAAI 177 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G GE +++LE F + F + I G D Sbjct: 178 KFIGTGEKLDELEVFNPRRFVSRILGMGD 206 >gi|254779702|ref|YP_003057808.1| Signal recognition particle protein (SRP) [Helicobacter pylori B38] gi|254001614|emb|CAX29714.1| Signal recognition particle protein (SRP) [Helicobacter pylori B38] Length = 448 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 152/297 (51%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ VA+++++++ ++ + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLSGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L L +L LS + F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVL+ Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + + VL PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMQELKGVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I +P+ F+G GE I DL+ FV + + G D Sbjct: 235 SGVVLSKFDSDSKGGIALGIAYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291 >gi|71033463|ref|XP_766373.1| signal recognition particle 54 kDa protein [Theileria parva strain Muguga] gi|68353330|gb|EAN34090.1| signal recognition particle 54 kDa protein, putative [Theileria parva] Length = 495 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/269 (31%), Positives = 130/269 (48%), Gaps = 14/269 (5%) Query: 53 LIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQRVLY----DVSELIHKMLMPLSKPFNWD 106 L+ +D+ V + K+ E + L K A + + Y V EL++ ML KPF Sbjct: 39 LLMADVNVKLVHKLKENVKRLNKNNADMIGANKRRYLQKIVVDELVN-MLTTEKKPFEPK 97 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 R +VI+ VG+ G GKTT K + G + L DTFR+ A DQLK A + Sbjct: 98 -KGRCNVIMFVGLQGAGKTTSCTKFAYHYQRKGWRTALICADTFRAGAFDQLKQNAAKVK 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 F S ++ A +A + + + +K D++I+DT+GR L + K+I D Sbjct: 157 ISFYGSYSEANPAKVAADGVARFKEEKYDMIIVDTSGRHKQEDALFDEM-KLI-----YD 210 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P V+ V+D+ GQ Q F+ +I+TK+DG A+GGG + V P+ Sbjct: 211 AVQPDEVVFVMDSHIGQACYDQAAAFNKAVDVGSVIITKLDGHAKGGGALSAVSATNSPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G GE +D EPF K F + + G D Sbjct: 271 IFIGTGEHFDDFEPFDPKSFISRLLGFGD 299 >gi|325958306|ref|YP_004289772.1| signal recognition particle-docking protein FtsY [Methanobacterium sp. AL-21] gi|325329738|gb|ADZ08800.1| signal recognition particle-docking protein FtsY [Methanobacterium sp. AL-21] Length = 427 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/278 (32%), Positives = 151/278 (54%), Gaps = 21/278 (7%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK------RYAKDVS------VQR 83 IS + ++D + ELE L+ D+ + VA+ I+ + T R DV+ +++ Sbjct: 147 ISEKDIED-ILFELEMSLLEGDVAMEVAETIITSVKTDLVGQKIRRRSDVAEFTREALKK 205 Query: 84 VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143 + ++ ++ K L L + S P I+ VG+NG GKTT I K+S + G + Sbjct: 206 AISEILDIPGKDLTSLLEEAKK--SGEPLKIMFVGINGTGKTTTIAKISTYFINKGYTPV 263 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 +AA DTFR+ AI+QL AD + + G+D AA+A++A A+AK +++++DTAG Sbjct: 264 IAASDTFRAGAIEQLTHHADNLDVKIIKHKKGADPAAVAFDAVAHARAKGKELVLVDTAG 323 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 R+ N LM + K+ RV+K P ++ V DA TG +++ Q + F+ G+I+ Sbjct: 324 RMQTNINLMDEMKKIKRVIK------PDLIIYVGDALTGNDSVEQAKKFNDAVTVDGIIL 377 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 TK D A+GG + I + P+ FLGVG+ +D+ F Sbjct: 378 TKADADAKGGAALSIGYVIQKPILFLGVGQSYSDIIEF 415 >gi|320539046|ref|ZP_08038720.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Serratia symbiotica str. Tucson] gi|320030886|gb|EFW12891.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Serratia symbiotica str. Tucson] Length = 453 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/212 (37%), Positives = 113/212 (53%), Gaps = 13/212 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT KL K + + K V++ + D +R AAI QL+ A+ Sbjct: 97 AQPPAVVLMAGLQGAGKTTSAAKLGKFLKEKHKKKVLVVSADIYRPAAIKQLEALAEGVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF SE+ + A +QA+ K DVLI+DTAGRLH + +M I ++ Sbjct: 157 IDFFPSEVKEKPLDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIRQV-------- 208 Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 HA P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ FLGVGE LEPF ++ I G D Sbjct: 268 KPIKFLGVGEKTEALEPFHPDRVASRILGMGD 299 >gi|304384767|ref|ZP_07367113.1| signal recognition particle protein [Pediococcus acidilactici DSM 20284] gi|304328961|gb|EFL96181.1| signal recognition particle protein [Pediococcus acidilactici DSM 20284] Length = 487 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 93/312 (29%), Positives = 155/312 (49%), Gaps = 23/312 (7%) Query: 17 LTKGFASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 L+ F + +L++ ++ ++ L D +RE + L+ +D+ V +K V+ + Sbjct: 9 LSMAFEGLTERLQKTFNNLRKKGKVTEADLRDTMRE-IRLALLEADVNFTVVKKFVKTVR 67 Query: 72 TKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 + D+ Q+++ V++ + KM+ + P N P VI++ G+ G GKTT Sbjct: 68 EQALGSDILEGLNPAQQIVKLVNDELVKMMGTEASPLNQ-APKIPTVIMMAGLQGAGKTT 126 Query: 127 VIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAY 183 GKL+ K+ ++ + +L A D +R AAIDQL ++ D + G+D + + Sbjct: 127 TTGKLALKLKNEKKARPLLIAADVYRPAAIDQLVQVGEQI--DVPVYQEGTDVSPVEIVR 184 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +QA K D + IDTAGRL + LM + + D P +L V+DA TGQ Sbjct: 185 HGLEQAAENKNDYVFIDTAGRLQIDEKLMQELADI------KDLAHPDEILLVVDAMTGQ 238 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NA+ E F+ TG+I+TK+DG RGG + I P+ F+G GE + DL+ F Sbjct: 239 NAVNTAEGFNDKLDVTGVILTKLDGDTRGGAALSIRAVTGKPIKFVGQGEKMEDLDVFHP 298 Query: 304 KDFSAVITGCLD 315 ++ I G D Sbjct: 299 DRMASRILGMGD 310 >gi|148240067|ref|YP_001225454.1| Signal recognition particle protein [Synechococcus sp. WH 7803] gi|147848606|emb|CAK24157.1| Signal recognition particle protein [Synechococcus sp. WH 7803] Length = 523 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/280 (31%), Positives = 143/280 (51%), Gaps = 16/280 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPLS 100 +G +++ L+ +D+ + V + V ++ K DV V+ V D +++H+ L+ + Sbjct: 57 EGALKDVRRALLEADVSLPVVKAFVADVREKAVGSDV-VRGVSPDQKFIQVVHEQLVEVM 115 Query: 101 KPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 N + P V+L+ G+ G GKTT KL + D G + ++ D +R AAI+Q Sbjct: 116 GGGNAPLAQAETAPTVVLMAGLQGAGKTTATAKLGLHLKDQGRRALMVGADVYRPAAIEQ 175 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK--VDVLIIDTAGRLHNNSILMAGI 215 LK + + +G+DA A A A+AK+ D L++DTAGRL +S +M Sbjct: 176 LKTLGGQIGVEVFS--LGADAKPEAIAAAGLAKAKEEGFDTLLVDTAGRLQIDSEMME-- 231 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 +M+R+ + P VL V+D+ GQ A FH G TG ++TK+DG +RGG Sbjct: 232 -EMVRIRTAVQ---PDEVLLVVDSMIGQEAAELTRAFHEQVGITGAVLTKLDGDSRGGAA 287 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+G GE + L+PF + ++ I G D Sbjct: 288 LSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRILGMGD 327 >gi|51595183|ref|YP_069374.1| signal recognition particle protein [Yersinia pseudotuberculosis IP 32953] gi|186894198|ref|YP_001871310.1| signal recognition particle protein [Yersinia pseudotuberculosis PB1/+] gi|51588465|emb|CAH20073.1| 4.5S-RNP protein (ffh), GTP binding export factor, part of signal recognition particle with 4.5S RNA [Yersinia pseudotuberculosis IP 32953] gi|186697224|gb|ACC87853.1| signal recognition particle protein [Yersinia pseudotuberculosis PB1/+] Length = 453 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/209 (37%), Positives = 113/209 (54%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT + KL K + + K V++ + D +R AAI QL+ A Sbjct: 97 AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQGVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S+ + A +QA+ K DVLI+DTAGRLH + +M I ++ +K Sbjct: 157 IDFFPSDAQEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I P+ Sbjct: 214 ---PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 FLGVGE + LEPF ++ I G D Sbjct: 271 KFLGVGEKSDALEPFHPDRIASRILGMGD 299 >gi|302038373|ref|YP_003798695.1| signal recognition particle protein [Candidatus Nitrospira defluvii] gi|300606437|emb|CBK42770.1| Signal recognition particle protein [Candidatus Nitrospira defluvii] Length = 449 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/212 (35%), Positives = 113/212 (53%), Gaps = 10/212 (4%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P +I++VG+ G GKTT GKL++ G +V+L A D R AA DQL Sbjct: 97 SRPPTIIMMVGLQGAGKTTTSGKLARLFKGQGKRVLLVAADPRRPAAGDQLASLGRDLGI 156 Query: 168 DF----VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 D +D + ++ Q + D++++DT GRLH + LMA +++ V + Sbjct: 157 DVHRFDQIDASRADVVRICQRGVERGQEQGYDLIVLDTGGRLHVDDELMA---ELVAVKQ 213 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 ++PH VL V DA TGQ+A+ F G TG+I+TK++G ARGG ++ I Sbjct: 214 AVNPH---EVLLVADAMTGQDAVNMAGQFDQQVGLTGVILTKVEGDARGGAVLSIRAVTG 270 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ FLG+GE ++ LEPF ++ I G D Sbjct: 271 KPIKFLGMGEKLDALEPFHPDRMASRILGMGD 302 >gi|152976211|ref|YP_001375728.1| signal recognition particle protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024963|gb|ABS22733.1| signal recognition particle protein [Bacillus cytotoxicus NVH 391-98] Length = 449 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 112/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K ML A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ + D ++IDTAGRLH + LM + K+ V Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEEHHDYVLIDTAGRLHIDEELMDELAKVKEVAN---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+DA TGQ+A+ + FH G TG+++TK+DG RGG + I P+ Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAKSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ +EPF + ++ I G D Sbjct: 273 FAGMGEKLDAIEPFHPERMASRILGMGD 300 >gi|238791382|ref|ZP_04635021.1| Signal recognition particle protein [Yersinia intermedia ATCC 29909] gi|238729515|gb|EEQ21030.1| Signal recognition particle protein [Yersinia intermedia ATCC 29909] Length = 453 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 114/212 (53%), Gaps = 13/212 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT + KL K + + K V++ + D +R AAI QL+ A Sbjct: 97 AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQGVD 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S++ + A +QA+ K DVLI+DTAGRLH + +M I ++ Sbjct: 157 IDFFPSDVQEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQI-------- 208 Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 HA P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ FLGVGE + LEPF ++ I G D Sbjct: 268 KPIKFLGVGEKSDALEPFHPDRVASRILGMGD 299 >gi|327479752|gb|AEA83062.1| signal recognition particle protein Ffh [Pseudomonas stutzeri DSM 4166] Length = 458 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 88/304 (28%), Positives = 153/304 (50%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L +D +++ L ++ L+ +D+ + V + V + + Sbjct: 2 FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNRVKERAVG 61 Query: 77 KDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLS 132 +VS +++ L L N D + P V+L+ G+ G GKTT +GKL+ Sbjct: 62 TEVSKSLTPGQAFVKIVRAELEELMGAANEDLALNVTPPAVVLMAGLQGAGKTTTVGKLA 121 Query: 133 KKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + + K V++ + D +R AAI QL+ A F S+ +A A ++A+ Sbjct: 122 RFLKERKKKTVLVVSADVYRPAAIKQLETLAGEVGVTFFPSDTSQKPVDIAQAAIREAKL 181 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K +DV+++DTAGRL ++ +MA I + +K P L V+DA TGQ+A Sbjct: 182 KFIDVVLVDTAGRLAIDAEMMAEIQAVHAAIK------PAETLFVVDAMTGQDAANTARA 235 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F TG+++TK+DG ARGG + + P+ FLG+GE + LEPF ++ I Sbjct: 236 FGDALPLTGVVLTKVDGDARGGAALSVRHVTGKPIKFLGMGEKSDALEPFHPDRIASRIL 295 Query: 312 GCLD 315 G D Sbjct: 296 GMGD 299 >gi|153813988|ref|ZP_01966656.1| hypothetical protein RUMTOR_00195 [Ruminococcus torques ATCC 27756] gi|317501511|ref|ZP_07959709.1| signal recognition particle protein [Lachnospiraceae bacterium 8_1_57FAA] gi|331088014|ref|ZP_08336936.1| signal recognition particle protein [Lachnospiraceae bacterium 3_1_46FAA] gi|145848384|gb|EDK25302.1| hypothetical protein RUMTOR_00195 [Ruminococcus torques ATCC 27756] gi|316897140|gb|EFV19213.1| signal recognition particle protein [Lachnospiraceae bacterium 8_1_57FAA] gi|330409162|gb|EGG88617.1| signal recognition particle protein [Lachnospiraceae bacterium 3_1_46FAA] Length = 453 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 93/304 (30%), Positives = 155/304 (50%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S + KL+ ++ S RL +D V+ L ++ L+ +D+ V +K V+++ + Sbjct: 3 FDSLTEKLQNVFRNLRSKGRLTEDDVKAALREVKMALLEADVNFKVVKKFVKDVQERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + K++ + VI++ G+ G GKTT KL Sbjct: 63 QDVMNGLNPGQMVIKIVNEELVKLMGSETTEIKLQPGSAITVIMMAGLQGAGKTTTTAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K G K +L A D +R AAI QL+I ++ + + A +A A AQ Sbjct: 123 AGKYKLKGKKPLLVACDVYRPAAIKQLQINGEKQGVEVFSMGDKNRPADIAKAALAHAQK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +++I+DTAGRLH + +MA + ++ ++ H + V+DA TGQ+A+ E Sbjct: 183 NGNNIVILDTAGRLHIDEDMMAELQQIKEAVE------VHQTILVVDAMTGQDAVNVAES 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 FH G G+I+TK+DG RGG + I P+ ++G+GE ++DLE F ++ I Sbjct: 237 FHNKIGIDGVIVTKLDGDTRGGAALSIKAVTGRPILYVGMGEKLSDLEQFYPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|114771306|ref|ZP_01448726.1| Signal recognition particle protein ffh [alpha proteobacterium HTCC2255] gi|114548231|gb|EAU51118.1| Signal recognition particle protein ffh [alpha proteobacterium HTCC2255] Length = 500 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 92/309 (29%), Positives = 158/309 (51%), Gaps = 23/309 (7%) Query: 21 FASTSLKLKEGITDIISSRRL--DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75 FA+ S +L G+ D ++++ DD V L ++ L+ +D+ + +A+ ++ + K Sbjct: 2 FANLSDRL-SGVFDKLNNKATLSDDDVSIALREVRVALLEADVSLPIARDFIKAIQAKAS 60 Query: 76 AKDVS--------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 + V+ V ++++D EL+H + + P IL+VG+ G GKTT Sbjct: 61 GQAVTKSVKPGQQVVKIVHD--ELVHFLAGEDKNASELKIDNPPAPILMVGLQGSGKTTT 118 Query: 128 IGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL+K++ + KV++A+ DT R AA++QL I + D + G A +A A Sbjct: 119 TAKLAKRLKEKNNKKVLIASLDTNRPAAMEQLAILGTQIGVDSLPIVKGESAVKIAKRAK 178 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 +QA DV I+DTAGRL + LM+ + + + K P + V+D TGQ+A+ Sbjct: 179 QQAMLGGYDVFILDTAGRLSIDEELMSEVEAVRNIAK------PRETMLVVDGLTGQDAV 232 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G +G+I+T+MDG RGG + + P+ F+G+GE ++ LE F + Sbjct: 233 HTAQNFDDRIGISGVILTRMDGDGRGGAALSMRAVTGRPIKFVGLGEKVDALEEFHPERV 292 Query: 307 SAVITGCLD 315 + I G D Sbjct: 293 AGRILGMGD 301 >gi|83771777|dbj|BAE61907.1| unnamed protein product [Aspergillus oryzae] Length = 607 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 140/283 (49%), Gaps = 40/283 (14%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101 +ED L++ ++ A ++ + EL+ K+ SV L E + K+L P S Sbjct: 318 MEDHLLKKNVAREAAVRLCDGVQRELVGKKTGNFQSVDAALRQAMESSLRKILTPTSSLD 377 Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 P + S RP+VI +VGVNGVGK+T +GK+ + +V++AA DTFR Sbjct: 378 LLREIDTVTSPTSKQQSPRPYVISIVGVNGVGKSTNLGKICYFLLQNNYRVLIAACDTFR 437 Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200 S A++QL++ A R + E G DAA +A +A + A K DV++ID Sbjct: 438 SGAVEQLRVHA-RNLKELSARENVGQVELYEKGYGKDAANVAKDAVEYGAANKFDVVLID 496 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258 TAGR HN+ LM+ + K + K P + V +A G +++ Q F+ GT Sbjct: 497 TAGRRHNDQRLMSSLEKFGKFAK------PDKIFMVGEALVGTDSVMQARNFNQAFGTGR 550 Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G I++K D G L+ +V IP+ FLGVG+ DL Sbjct: 551 NLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 593 >gi|95930754|ref|ZP_01313487.1| signal recognition particle protein [Desulfuromonas acetoxidans DSM 684] gi|95133234|gb|EAT14900.1| signal recognition particle protein [Desulfuromonas acetoxidans DSM 684] Length = 451 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/286 (30%), Positives = 146/286 (51%), Gaps = 14/286 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 ++ +D+ +RE + +L+ +D+ V + V + + DV Q+V+ V + Sbjct: 22 LTESHVDEAMRE-VRLVLLEADVNFKVVKDFVAAVRERAVGTDVLKSLTPAQQVIKIVRD 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 + + LM D + +P V I++ G+ G GKTT GKL+ ++ +L D Sbjct: 81 ELGR-LMGEGDNAALDLAAQPPVPIMLCGLQGAGKTTTCGKLALQLRRDKRDPLLVPADI 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI+QLK + ++ G D ++ +A + A+ D LI+DTAGRLH +S Sbjct: 140 YRPAAIEQLKTLGRQLGVAVFDTQPGDDPVSICEQAREFARLNGHDTLILDTAGRLHIDS 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 LM +G++ L+ P +L V DA TGQ+A+ V+ F TG+++TK+DG Sbjct: 200 ELMDELGRINDALQ------PREILFVADAMTGQDAVNVVKSFDEKLDITGVVLTKLDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ARGG + + P+ F+G+GE ++ LE F + I G D Sbjct: 254 ARGGAALSVRAVTGKPIKFVGMGEKMDALEVFHPDRMAQRILGMGD 299 >gi|317148977|ref|XP_001823040.2| signal sequence receptor alpha subunit [Aspergillus oryzae RIB40] Length = 646 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 140/283 (49%), Gaps = 40/283 (14%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101 +ED L++ ++ A ++ + EL+ K+ SV L E + K+L P S Sbjct: 357 MEDHLLKKNVAREAAVRLCDGVQRELVGKKTGNFQSVDAALRQAMESSLRKILTPTSSLD 416 Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 P + S RP+VI +VGVNGVGK+T +GK+ + +V++AA DTFR Sbjct: 417 LLREIDTVTSPTSKQQSPRPYVISIVGVNGVGKSTNLGKICYFLLQNNYRVLIAACDTFR 476 Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200 S A++QL++ A R + E G DAA +A +A + A K DV++ID Sbjct: 477 SGAVEQLRVHA-RNLKELSARENVGQVELYEKGYGKDAANVAKDAVEYGAANKFDVVLID 535 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258 TAGR HN+ LM+ + K + K P + V +A G +++ Q F+ GT Sbjct: 536 TAGRRHNDQRLMSSLEKFGKFAK------PDKIFMVGEALVGTDSVMQARNFNQAFGTGR 589 Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G I++K D G L+ +V IP+ FLGVG+ DL Sbjct: 590 NLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 632 >gi|288559422|ref|YP_003422908.1| signal recognition particle SRP54 protein [Methanobrevibacter ruminantium M1] gi|288542132|gb|ADC46016.1| signal recognition particle SRP54 protein [Methanobrevibacter ruminantium M1] Length = 444 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/275 (29%), Positives = 139/275 (50%), Gaps = 13/275 (4%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL--YDVSELIHKMLMPL--S 100 V ++++ LI+SD+ + + K+ + + KR ++ + + V +I++ ++ L S Sbjct: 30 VVKDIQRALIQSDVNIQLVLKL-SKTIEKRALEEEPPKGITPREHVITIIYEEMVNLLGS 88 Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 + + +P IL +G+ G GKTT IGKL + + G + DT+R AA +QLK Sbjct: 89 EAQELKITEKPFKILFLGLQGSGKTTTIGKLCRYLQRKGFSPAVVCTDTWRPAAYEQLKQ 148 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 + DA LA + K + +K+ +I DTAGR N L+ + K+ + Sbjct: 149 LTEEMQIQLYGDPDNKDALDLAEKGLKHFKNQKI--IIFDTAGRHKNEEDLIEEMNKLDK 206 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 ++ P + V+DAT GQ A Q + F +I++K+DGTA+GGG + V Sbjct: 207 IIN------PSESMLVIDATIGQQAGEQAKAFSQATDIGSIIISKLDGTAKGGGALSAVA 260 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GEGI+D E F + F + + G D Sbjct: 261 ETGAPIKFIGTGEGIDDFEAFDPERFISRLLGMGD 295 >gi|22124802|ref|NP_668225.1| signal recognition particle protein [Yersinia pestis KIM 10] gi|45440246|ref|NP_991785.1| signal recognition particle protein [Yersinia pestis biovar Microtus str. 91001] gi|108808839|ref|YP_652755.1| signal recognition particle protein [Yersinia pestis Antiqua] gi|108810966|ref|YP_646733.1| signal recognition particle protein [Yersinia pestis Nepal516] gi|145600319|ref|YP_001164395.1| signal recognition particle protein [Yersinia pestis Pestoides F] gi|153949054|ref|YP_001402187.1| signal recognition particle protein [Yersinia pseudotuberculosis IP 31758] gi|153997658|ref|ZP_02022758.1| signal recognition particle protein [Yersinia pestis CA88-4125] gi|162421754|ref|YP_001605456.1| signal recognition particle protein [Yersinia pestis Angola] gi|165925805|ref|ZP_02221637.1| signal recognition particle protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165936674|ref|ZP_02225241.1| signal recognition particle protein [Yersinia pestis biovar Orientalis str. IP275] gi|166010102|ref|ZP_02231000.1| signal recognition particle protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166212941|ref|ZP_02238976.1| signal recognition particle protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167399424|ref|ZP_02304948.1| signal recognition particle protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421480|ref|ZP_02313233.1| signal recognition particle protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423282|ref|ZP_02315035.1| signal recognition particle protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218930317|ref|YP_002348192.1| signal recognition particle protein [Yersinia pestis CO92] gi|229838915|ref|ZP_04459074.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896398|ref|ZP_04511566.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Yersinia pestis Pestoides A] gi|229899481|ref|ZP_04514623.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Yersinia pestis biovar Orientalis str. India 195] gi|229901181|ref|ZP_04516304.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Yersinia pestis Nepal516] gi|294505009|ref|YP_003569071.1| signal recognition particle protein [Yersinia pestis Z176003] gi|21957627|gb|AAM84476.1|AE013692_5 GTP-binding export factor [Yersinia pestis KIM 10] gi|45435102|gb|AAS60662.1| signal recognition particle protein [Yersinia pestis biovar Microtus str. 91001] gi|108774614|gb|ABG17133.1| signal recognition particle subunit FFH/SRP54 (srp54) [Yersinia pestis Nepal516] gi|108780752|gb|ABG14810.1| signal recognition particle subunit FFH/SRP54 (srp54) [Yersinia pestis Antiqua] gi|115348928|emb|CAL21887.1| signal recognition particle protein [Yersinia pestis CO92] gi|145212015|gb|ABP41422.1| signal recognition particle subunit FFH/SRP54 (srp54) [Yersinia pestis Pestoides F] gi|149289295|gb|EDM39375.1| signal recognition particle protein [Yersinia pestis CA88-4125] gi|152960549|gb|ABS48010.1| signal recognition particle protein [Yersinia pseudotuberculosis IP 31758] gi|162354569|gb|ABX88517.1| signal recognition particle protein [Yersinia pestis Angola] gi|165915323|gb|EDR33933.1| signal recognition particle protein [Yersinia pestis biovar Orientalis str. IP275] gi|165922417|gb|EDR39594.1| signal recognition particle protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165991009|gb|EDR43310.1| signal recognition particle protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166205728|gb|EDR50208.1| signal recognition particle protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166960399|gb|EDR56420.1| signal recognition particle protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051928|gb|EDR63336.1| signal recognition particle protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057452|gb|EDR67198.1| signal recognition particle protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681906|gb|EEO77999.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Yersinia pestis Nepal516] gi|229687478|gb|EEO79552.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Yersinia pestis biovar Orientalis str. India 195] gi|229695281|gb|EEO85328.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700472|gb|EEO88503.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Yersinia pestis Pestoides A] gi|262363072|gb|ACY59793.1| signal recognition particle protein [Yersinia pestis D106004] gi|262366998|gb|ACY63555.1| signal recognition particle protein [Yersinia pestis D182038] gi|294355468|gb|ADE65809.1| signal recognition particle protein [Yersinia pestis Z176003] gi|320016490|gb|ADW00062.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 453 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/209 (37%), Positives = 113/209 (54%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT + KL K + + K V++ + D +R AAI QL+ A Sbjct: 97 AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQGVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S+ + A +QA+ K DVLI+DTAGRLH + +M I ++ +K Sbjct: 157 IDFFPSDAQEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I P+ Sbjct: 214 ---PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 FLGVGE + LEPF ++ I G D Sbjct: 271 KFLGVGEKSDALEPFHPDRIASRILGMGD 299 >gi|57239270|ref|YP_180406.1| Signal recognition particle protein [Ehrlichia ruminantium str. Welgevonden] gi|58579233|ref|YP_197445.1| Signal recognition particle protein [Ehrlichia ruminantium str. Welgevonden] gi|57161349|emb|CAH58272.1| signal recognition particle protein [Ehrlichia ruminantium str. Welgevonden] gi|58417859|emb|CAI27063.1| Signal recognition particle protein [Ehrlichia ruminantium str. Welgevonden] Length = 450 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/272 (31%), Positives = 149/272 (54%), Gaps = 13/272 (4%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELI 92 +ISS D V EE++ L+ +D+ ++V + + ++ R + +++ VL V + I Sbjct: 21 VISSEDFD-SVMEEVKVALLEADVALSVVKSFINDI-KDRIVGETTIKGVLPTQMVIKKI 78 Query: 93 HKMLMPL--SKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 L+ + + + D S +P VI++VG+ GVGKTT KL+ ++ + +V++A+ D Sbjct: 79 QDCLIEILGVEKRDLDLSAKPFAVIMMVGLQGVGKTTTTAKLALRLKNKKKEVLMASLDL 138 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AA QL+I + + +A A A+ +VLI DTAGRLH + Sbjct: 139 YRPAAQTQLEILGKQIDVKTLPIIEKQQPVDIAKRAITVAKESNCNVLIFDTAGRLHVDE 198 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 I+M + K I+ + +P V+ V DA GQ+A+ V+ F + G TG+I+T++DG Sbjct: 199 IMMEEL-KAIKAI-----TSPSEVILVADAMIGQDAVNVVKSFDSNIGITGIILTRIDGD 252 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +RGG + + ++ P+ FL GE ++DL+ F Sbjct: 253 SRGGAALSMKMSTGTPIKFLATGEKLSDLDDF 284 >gi|157831065|pdb|1FFH|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition Protein Ffh From Thermus Aquaticus Length = 294 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 142/307 (46%), Gaps = 28/307 (9%) Query: 21 FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S +L+E I + R+ + E+ L+ +D+ + V + VE + + Sbjct: 1 FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALG 60 Query: 77 KDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 K V + +L V E + + L +P+ K N F +VG+ G GKTT Sbjct: 61 KQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWF--------LVGLQGSGKTT 112 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL+ G + +L A DT R AA +QL++ ++ + G ++ Sbjct: 113 TAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 172 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 ++A+ + D++++DTAGRL + LM + ++ VL P VL VLDA TGQ AL Sbjct: 173 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEAL 226 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G TGL++TK+DG ARGG + P+YF GV E LEPF + Sbjct: 227 SVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERL 286 Query: 307 SAVITGC 313 + I G Sbjct: 287 AGRILGM 293 >gi|225551839|ref|ZP_03772782.1| signal recognition particle protein [Borrelia sp. SV1] gi|225371634|gb|EEH01061.1| signal recognition particle protein [Borrelia sp. SV1] Length = 444 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/276 (30%), Positives = 140/276 (50%), Gaps = 15/276 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH-------KMLMPL 99 E +++ L+ +D+ + V ++ + ++ + +K V V R + S+ I K L Sbjct: 32 EIIKNSLVDADVNLRVIRRFLNSIIEE--SKGVKVLRGIDPKSQFIKIVNDNLVKFLGGK 89 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 S + +++ IL++G+ G GKTT KLS K+ KV+L A DTFR+AA++QLK Sbjct: 90 SYGLSLHPANKQSYILMLGLQGSGKTTTCAKLSLKLKKENRKVLLVAADTFRAAAVEQLK 149 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 I + E D + + K A++ D +I+DT GRL S+L+ I K+ Sbjct: 150 ILGGQVGVPVFSIEGEKDPIKIVKASMKFAESNFFDSVIVDTRGRLEIESLLVEEIKKIK 209 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 +L+ P + V+D+ GQ A+ + F+ G TG I +K D RGG ++ Sbjct: 210 GILR------PAETILVVDSMMGQVAVNIAKEFNENVGLTGAIFSKFDSDTRGGAVLSFK 263 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P+ F+GVGE I DL+ F + ++ I G D Sbjct: 264 SICAVPIKFIGVGEKIEDLDSFYPERIASRILGMGD 299 >gi|152997772|ref|YP_001342607.1| signal recognition particle protein [Marinomonas sp. MWYL1] gi|150838696|gb|ABR72672.1| signal recognition particle protein [Marinomonas sp. MWYL1] Length = 460 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 97/308 (31%), Positives = 150/308 (48%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + I +L +D ++E L ++ L+ +D+ + V + + + + Sbjct: 2 FDNLSNRLTSSLDRIRGRAKLTEDNIQEVLREVRMALLEADVALPVVKDFIAAVKERAIG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q L V + + ++ + N + RP VIL+ G+ G GKTT KL Sbjct: 62 TEVSKSLSPGQVFLKIVKQELENVMGQANDGLNLR-AARPAVILLAGLQGAGKTTSAAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + K V + + D +R AAI QL+ A DF+ S++ + A A+ Sbjct: 121 AKYLKEREKKSVSVVSADVYRPAAIKQLETLAGEVGVDFIPSDLSQKPIDIVNNAIDYAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 DVLI+DTAGRL + +MA I + HA P L V+DA TGQ+A Sbjct: 181 KAHKDVLIVDTAGRLSIDEDMMAEIKAL---------HAAVNPIETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F V TG+I+TK DG ARGG + + P+ FLGVGE + LEPF + Sbjct: 232 TAKAFGDVLPLTGVILTKTDGDARGGAALSVRHITGKPIKFLGVGEKTSALEPFHPDRLA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|119467570|ref|XP_001257591.1| signal sequence receptor alpha subunit, putative [Neosartorya fischeri NRRL 181] gi|119405743|gb|EAW15694.1| signal sequence receptor alpha subunit, putative [Neosartorya fischeri NRRL 181] Length = 649 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 92/282 (32%), Positives = 141/282 (50%), Gaps = 38/282 (13%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101 +ED L++ ++ A ++ E EL+ K+ SV L E + K+L P S Sbjct: 360 MEDHLLKKNVAREAAVRLCEGVQRELVGKKTGNFQSVDAALRSAMESSLRKILTPTSSLD 419 Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 P + + RP+VI +VGVNGVGK+T +GK+ + +V++AA DTFR Sbjct: 420 LLREIDAVRSPTSKGQAPRPYVISIVGVNGVGKSTNLGKICYFLLQNNYRVLIAACDTFR 479 Query: 152 SAAIDQLKIWA---DRTSADFVCSEI-------GSDAAALAYEAFKQAQAKKVDVLIIDT 201 S A++QL++ A SA E+ G DAA +A +A + A + DV++IDT Sbjct: 480 SGAVEQLRVHARNLKELSARENAGEVELYEKGYGKDAANVAKDAVEYGAANQFDVVLIDT 539 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT--- 258 AGR HN+ LM+ + K + K P + V +A G +++ Q F+ GT Sbjct: 540 AGRRHNDQRLMSSLEKFAKFAK------PDKIFMVGEALVGTDSVMQARNFNQAFGTGRN 593 Query: 259 -TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G I++K D G L+ +V IP+ FLGVG+ DL Sbjct: 594 LDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 635 >gi|238494260|ref|XP_002378366.1| signal sequence receptor alpha subunit, putative [Aspergillus flavus NRRL3357] gi|220695016|gb|EED51359.1| signal sequence receptor alpha subunit, putative [Aspergillus flavus NRRL3357] Length = 646 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 140/283 (49%), Gaps = 40/283 (14%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101 +ED L++ ++ A ++ + EL+ K+ SV L E + K+L P S Sbjct: 357 MEDHLLKKNVAREAAVRLCDGVQRELVGKKTGNFQSVDAALRQAMESSLRKILTPTSSLD 416 Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 P + S RP+VI +VGVNGVGK+T +GK+ + +V++AA DTFR Sbjct: 417 LLREIDTVTSPTSKQQSPRPYVISIVGVNGVGKSTNLGKICYFLLQNNYRVLIAACDTFR 476 Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200 S A++QL++ A R + E G DAA +A +A + A K DV++ID Sbjct: 477 SGAVEQLRVHA-RNLKELSARENVGQVELYEKGYGKDAANVAKDAVEYGAANKFDVVLID 535 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258 TAGR HN+ LM+ + K + K P + V +A G +++ Q F+ GT Sbjct: 536 TAGRRHNDQRLMSSLEKFGKFAK------PDKIFMVGEALVGTDSVMQARNFNQAFGTGR 589 Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G I++K D G L+ +V IP+ FLGVG+ DL Sbjct: 590 NLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 632 >gi|157835378|pdb|2NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition Protein Ffh From Thermus Aquaticus Length = 293 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 142/307 (46%), Gaps = 28/307 (9%) Query: 21 FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S +L+E I + R+ + E+ L+ +D+ + V + VE + + Sbjct: 1 FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALG 60 Query: 77 KDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 K V + +L V E + + L +P+ K N F +VG+ G GKTT Sbjct: 61 KQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWF--------LVGLQGSGKTT 112 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL+ G + +L A DT R AA +QL++ ++ + G ++ Sbjct: 113 TAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 172 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 ++A+ + D++++DTAGRL + LM + ++ VL P VL VLDA TGQ AL Sbjct: 173 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEAL 226 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F G TGL++TK+DG ARGG + P+YF GV E LEPF + Sbjct: 227 SVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERL 286 Query: 307 SAVITGC 313 + I G Sbjct: 287 AGRILGM 293 >gi|222054584|ref|YP_002536946.1| signal recognition particle protein [Geobacter sp. FRC-32] gi|221563873|gb|ACM19845.1| signal recognition particle protein [Geobacter sp. FRC-32] Length = 449 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 90/286 (31%), Positives = 143/286 (50%), Gaps = 22/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEE--------LLTKRYAKDVSVQRVLYDVSE 90 +D V+E L ++ L+ +D+ V + +E L+ + + V ++++D E Sbjct: 24 EDNVKEALREVRLALLEADVNFKVVKDFIERVREKAVGTLVLQSLSPGQQVVKIVHD--E 81 Query: 91 LIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 L+ LM + + D + +P V I++VG+ G GKTT GKL+K + K +L D Sbjct: 82 LVA--LMGGGEDNSLDLAAKPPVSIMMVGLQGAGKTTSCGKLAKLLKSQRRKPLLVPADI 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI+QLKI + S + S+ + +A K AQ D +I DTAGR + Sbjct: 140 YRPAAIEQLKILGRQLSIEVFDSQADQKPVDICSKALKYAQLSGFDTVIFDTAGRHQIDD 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 LM +++ + P +L V DA TGQ A+ F G TG+++TK+DG Sbjct: 200 YLMD------ELVQIREAAEPREILFVADAMTGQEAVNVAAGFDERLGITGVVLTKLDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 A+GG + I PV F+G+GE ++ LE F A + I G D Sbjct: 254 AKGGAALSIKAVTGKPVKFVGLGEKLDALEVFHADRLVSRILGMGD 299 >gi|237830449|ref|XP_002364522.1| signal recognition particle 54 kda protein, putative [Toxoplasma gondii ME49] gi|211962186|gb|EEA97381.1| signal recognition particle 54 kda protein, putative [Toxoplasma gondii ME49] gi|221507395|gb|EEE32999.1| signal recognition particle 54 kda protein, putative [Toxoplasma gondii VEG] Length = 582 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 126/250 (50%), Gaps = 10/250 (4%) Query: 59 GVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELIHKMLMPLSKPFNWDFSHRPHVILV 116 G ++ E+ T+ A V+ ++++ +SE++ ML P +P+ +VI+ Sbjct: 121 GTGASKDSFREINTRAAAVGVNSRKIIQKCVISEIV-AMLTPARQPY-VPRKGATNVIMF 178 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VG+ G GKTT K + G +V L DTFR+ A DQLK A + F S + Sbjct: 179 VGLQGSGKTTTCTKYAHYYQRKGWRVALVCADTFRAGAFDQLKQNATKVRIPFYGSYTEA 238 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D +A E +Q + +K D++I+DT+GR + L +M +V + +D P V+ V Sbjct: 239 DPVKIAEEGVEQFRREKYDMIIVDTSGRHKQEAAL---FDEMKQVAEAVD---PDDVVFV 292 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 +D+ GQ Q + F +I+TK+DG A+GGG + V P+ FLG GE + Sbjct: 293 MDSHIGQACFDQAQAFSDSVDVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGEHFD 352 Query: 297 DLEPFVAKDF 306 D E F A F Sbjct: 353 DFEAFEANSF 362 >gi|23295846|gb|AAN12396.1| signal recognition particle 54 kDa [Trypanosoma brucei] Length = 487 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/282 (30%), Positives = 139/282 (49%), Gaps = 15/282 (5%) Query: 42 DDGVRE---ELEDLLIRSDIGV----AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIH 93 +D V+E E+ L+++D+ V + Q + E+ A ++ +++L V I Sbjct: 25 EDDVKEFXNEVARALLQADVNVKTVKELQQNVRAEVAITAEAAGLNKRKMLQTAVFNGIK 84 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 KML P KPF + +++ VG+ G GKTT K + GLK L DTFR+ Sbjct: 85 KMLDPGVKPF-IPAKGKTSIVMFVGLQGSGKTTSCTKYAAYFQRKGLKTGLVCADTFRAG 143 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A DQL+ A + F S +D +A E + + +K D++I+DT+GR S L Sbjct: 144 AYDQLRQNATKAKVRFYGSLTEADPVIIAKEGVLELKKEKYDLIIVDTSGRHKQESALFE 203 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + ++ + +K P+ ++ V+ AT GQ Q F +I+TK+DG A+GG Sbjct: 204 EMKQVQQAVK------PNDIVFVMSATDGQGIEEQARQFKEKVPIGSVIVTKLDGQAKGG 257 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + V K P+ F+G GE +D E F + F + + G D Sbjct: 258 GALAAVAMTKSPIVFIGTGEHFDDFELFQPESFVSRMLGMGD 299 >gi|227827525|ref|YP_002829305.1| GTP-binding signal recognition particle SRP54 G-domain protein [Sulfolobus islandicus M.14.25] gi|229584728|ref|YP_002843230.1| GTP-binding signal recognition particle SRP54 G-domain [Sulfolobus islandicus M.16.27] gi|238619682|ref|YP_002914508.1| GTP-binding signal recognition particle SRP54 G-domain [Sulfolobus islandicus M.16.4] gi|259511383|sp|C3N5B0|SRP54_SULIA RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|259511384|sp|C4KGX6|SRP54_SULIK RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|259511386|sp|C3MYM8|SRP54_SULIM RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|227459321|gb|ACP38007.1| GTP-binding signal recognition particle SRP54 G-domain protein [Sulfolobus islandicus M.14.25] gi|228019778|gb|ACP55185.1| GTP-binding signal recognition particle SRP54 G-domain [Sulfolobus islandicus M.16.27] gi|238380752|gb|ACR41840.1| GTP-binding signal recognition particle SRP54 G-domain [Sulfolobus islandicus M.16.4] gi|323474576|gb|ADX85182.1| GTP-binding signal recognition particle SRP54 G-domain protein [Sulfolobus islandicus REY15A] gi|323477308|gb|ADX82546.1| GTP-binding signal recognition particle SRP54, G-domain [Sulfolobus islandicus HVE10/4] Length = 447 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 90/279 (32%), Positives = 140/279 (50%), Gaps = 20/279 (7%) Query: 47 EELEDLLIRSDIGVAVAQKI---VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---S 100 +EL+ LI SD+ V + + ++E L K V ++R + +S +++ L L Sbjct: 28 KELQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSV-LERKEWFIS-IVYDELSKLFGGD 85 Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 K N + + P +I++VGV G GKTT GKL+ G KV L A D +R AA DQL Sbjct: 86 KEPNVNPTKLPFIIMLVGVQGSGKTTTSGKLAYFYKRRGYKVGLVAADVYRPAAYDQLLQ 145 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 ++ +A +A + K+D++I+DTAGR G G+ + Sbjct: 146 LGNQIGVPVYGEPNNQNAIEIAKKGVDTFVKNKMDIIIVDTAGR--------HGYGEETK 197 Query: 221 VLKRL----DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 +L+ + + P V+ V+DA+ GQ A FH + +I+TKMDGTA+GGG + Sbjct: 198 LLEEMKEIYEALKPDDVILVIDASIGQKAYDLASRFHQASPIGSIIITKMDGTAKGGGAL 257 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 V + F+G GE I++LE F AK + + I G D Sbjct: 258 SAVAATGATIKFIGTGEKIDELEIFNAKRYVSRILGMGD 296 >gi|255037144|ref|YP_003087765.1| signal recognition particle protein [Dyadobacter fermentans DSM 18053] gi|254949900|gb|ACT94600.1| signal recognition particle protein [Dyadobacter fermentans DSM 18053] Length = 440 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/305 (28%), Positives = 153/305 (50%), Gaps = 20/305 (6%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 KL F +LK K+ I+DI + +E+ L+ +D+ VA++I + + K Sbjct: 8 KLNNAF--RTLKGKDRISDINVA-----ATTKEVRKALVDADVNFKVAKEITDRIREKAI 60 Query: 76 AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + + + Q + V E + +++ ++ N P VIL+ G+ G GKTT GK Sbjct: 61 DRKILISVEPGQMFVKIVQEELTELMGGNAEGIN--IKGDPAVILIAGLQGSGKTTFSGK 118 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + G +V+L A D +R AAIDQLK+ ++ + +A ++A A A+ Sbjct: 119 LASLLKKQGRQVLLTACDVYRPAAIDQLKVLGEQIGVEVYSEPENKNAVSIAQNAVSHAK 178 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 ++I+DTAGRL + ++M + + +K P +L V+D+ TGQ+A+ + Sbjct: 179 KSGKKIVIVDTAGRLAVDEVMMKEVEDIKTSVK------PSEILFVVDSMTGQDAVNTAK 232 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ G+++TK+DG ARGG + I + P+ ++ GE + L+ F ++ I Sbjct: 233 TFNERLDFDGVVLTKLDGDARGGAALSIRQVVEKPIKYISTGEKMEALDSFYPDRMASRI 292 Query: 311 TGCLD 315 G D Sbjct: 293 LGMGD 297 >gi|84501330|ref|ZP_00999535.1| signal recognition particle protein [Oceanicola batsensis HTCC2597] gi|84390621|gb|EAQ03109.1| signal recognition particle protein [Oceanicola batsensis HTCC2597] Length = 504 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/287 (30%), Positives = 147/287 (51%), Gaps = 21/287 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVS--------VQRVLYDVSE 90 D+ V+ L ++ L+ +D+ + VA+ V+ + K + V+ V ++++D E Sbjct: 24 DEDVKTALREVRVALLEADVSLPVARDFVKAVQDKATGQAVTRSITPGQQVVKIVHD--E 81 Query: 91 LIHKMLM-PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGD 148 L+H + P + P + P IL+VG+ G GKTT KL+K++ + G +V++A+ D Sbjct: 82 LVHVLAGDPEADPGKLKIDNPPAPILMVGLQGSGKTTTTAKLAKRLKEKEGKRVLMASLD 141 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 R AA++QL+I + D + G D +A A QA DV ++DTAGRLH + Sbjct: 142 VNRPAAMEQLQILGTQIGVDTLPIVKGEDPVQIAKRAKTQASMGGYDVYMLDTAGRLHID 201 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 L+A + D P L V+D TGQ+A+ F G +G+++T+MDG Sbjct: 202 QELIAQAAAV------RDVANPRETLLVVDGLTGQDAVNVATEFDDKIGVSGVVLTRMDG 255 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + + P+ F+G+GE ++ +E F + + I G D Sbjct: 256 DGRGGAALSMRAITGKPIKFVGLGEKMDAIETFEPERIAGRILGMGD 302 >gi|326793984|ref|YP_004311804.1| signal recognition particle protein [Marinomonas mediterranea MMB-1] gi|326544748|gb|ADZ89968.1| signal recognition particle protein [Marinomonas mediterranea MMB-1] Length = 466 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/206 (38%), Positives = 109/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT GKL+K + + K V + + D +R AAI QL+ A DF Sbjct: 100 PAVILLAGLQGAGKTTSAGKLAKFLKERQKKSVAVVSADVYRPAAIKQLETLASDVGVDF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + S+I +A A A+ DVLI+DTAGRL + +MA I + + Sbjct: 160 IPSDISQKPIDIANNAIDVARKAHKDVLIVDTAGRLAIDEDMMAEIKALHGAIN------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+D+ TGQ+A + F V TG+I+TK DG ARGG + + P+ FL Sbjct: 214 PVETLFVVDSMTGQDAANTAKAFGDVLPLTGVILTKTDGDARGGAALSVRHITGKPIKFL 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE + LEPF ++ I G D Sbjct: 274 GVGEKTDALEPFHPDRLASRILGMGD 299 >gi|238019717|ref|ZP_04600143.1| hypothetical protein VEIDISOL_01592 [Veillonella dispar ATCC 17748] gi|237863758|gb|EEP65048.1| hypothetical protein VEIDISOL_01592 [Veillonella dispar ATCC 17748] Length = 450 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 95/318 (29%), Positives = 157/318 (49%), Gaps = 36/318 (11%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F S S KL+E + I+ ++ +R+ + L+ +D+ VA+ V+ + K Sbjct: 3 FDSLSEKLQEAFQSLKGKGKITEEDVNLALRQ-VRTALLEADVNFMVAKDFVKSIKEKAL 61 Query: 76 AKDV-----SVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVG 123 ++V Q V+ V++ + +L M SKP P +I++VG+ G G Sbjct: 62 GEEVFGSLNPAQTVIKIVNDELTALLGGTQSRIMISSKP--------PTIIMLVGLQGAG 113 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALA 182 KTT GKL+ + G ML A D +R AAI QL++ + E G++ +A Sbjct: 114 KTTTAGKLAVYLRKQGKHPMLVAADVYRPAAITQLQVVGKQIDIPVFADETPGANPVDIA 173 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 A +Q+ DV+IIDTAGRL + +LM + + ++ PH +L V+D+ G Sbjct: 174 RRAVEQSTHMLKDVVIIDTAGRLAIDEVLMDELSNIKAAVR------PHEILLVVDSMIG 227 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 Q+A+ + F+ G G+I+TK+DG ARGG + I +P+ F GV E ++ + F Sbjct: 228 QDAVTTAQTFNEKLGVDGVILTKLDGDARGGAALSIKAVTGLPIKFTGVSEKMDGFDVFY 287 Query: 303 AKDFSAVITGCLDYGEEK 320 ++ I LD G+ K Sbjct: 288 PDRMASRI---LDLGDFK 302 >gi|255692684|ref|ZP_05416359.1| signal recognition particle protein [Bacteroides finegoldii DSM 17565] gi|260621568|gb|EEX44439.1| signal recognition particle protein [Bacteroides finegoldii DSM 17565] Length = 440 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/265 (29%), Positives = 140/265 (52%), Gaps = 13/265 (4%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99 V E L+D+ L+ +D+ VA+ + + K ++V + + + +++H L L Sbjct: 26 NVAETLKDVRKALLDADVNYKVAKNFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQL 85 Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156 + + RP VIL+ G+ G GKTT GKL++ + S K +L A D +R AAI+ Sbjct: 86 MGGETAEINIDSRPAVILMSGLQGSGKTTFSGKLARMLKSKKNRKPLLVACDVYRPAAIE 145 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL++ A++ C + +A A ++A+AK D++I+DTAGRL + +M I Sbjct: 146 QLRVLAEQIEVPMYCELDSKNPVEIAQHAIQEAKAKGYDLVIVDTAGRLAVDEQMMNEIA 205 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + + P+ +L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + Sbjct: 206 AIKEAIN------PNEILFVVDSMTGQDAVNTAKEFNDRLDFNGVVLTKLDGDTRGGAAL 259 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301 I P+ F+G GE ++ ++ F Sbjct: 260 SIRSVVNKPIKFVGTGEKLDAIDQF 284 >gi|119505224|ref|ZP_01627299.1| Signal recognition particle protein [marine gamma proteobacterium HTCC2080] gi|119458915|gb|EAW40015.1| Signal recognition particle protein [marine gamma proteobacterium HTCC2080] Length = 460 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 149/307 (48%), Gaps = 31/307 (10%) Query: 30 EGITDIIS---------SRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAK 77 EG++D +S SR +D +R+ L ++ L+ +D+ + V + E + T+ Sbjct: 3 EGLSDRLSASLKSMSGKSRLTEDNIRDTLREVRMALLEADVALEVVKSFTEAVKTRAVGA 62 Query: 78 DVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 +V+ Q L V + + + ++ + + P V++V G+ G GKTT I KL+ Sbjct: 63 EVAQSLTPGQEFLKIVQAELTQTMGSANEALTLN-AQPPAVVMVAGLQGAGKTTSIAKLA 121 Query: 133 KKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + + K V + + D +R AAI QL+ A A F S + A+ A + A+ Sbjct: 122 RYLMEREKKSVAVVSADVYRPAAIKQLETLASEVGARFEPSSVEEKPVAIVNRALENARL 181 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQ 248 DVL++DTAGRL + +MA I ++ HA P L V+DA GQ+A+ Sbjct: 182 NFTDVLLVDTAGRLAVDDAMMAEIREL---------HAAVNPIETLFVVDAMMGQDAVMT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 F TG+I+TK+D RGG + + P+ FLGVGE + L+PF ++ Sbjct: 233 ARAFGETLPLTGVILTKVDADTRGGAALSVRSVTGKPIKFLGVGEKTDALDPFHPDRLAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|270290355|ref|ZP_06196580.1| signal recognition particle protein [Pediococcus acidilactici 7_4] gi|270281136|gb|EFA26969.1| signal recognition particle protein [Pediococcus acidilactici 7_4] Length = 477 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 90/288 (31%), Positives = 145/288 (50%), Gaps = 18/288 (6%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 ++ L D +RE + L+ +D+ V +K V+ + + D+ Q+++ V++ Sbjct: 23 VTEADLRDTMRE-IRLALLEADVNFTVVKKFVKTVREQALGSDILEGLNPAQQIVKLVND 81 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDT 149 + KM+ + P N P VI++ G+ G GKTT GKL+ K+ ++ + +L A D Sbjct: 82 ELVKMMGTEASPLNQ-APKIPTVIMMAGLQGAGKTTTTGKLALKLKNEKKARPLLIAADV 140 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHN 207 +R AAIDQL ++ D + G+D + + +QA K D + IDTAGRL Sbjct: 141 YRPAAIDQLVQVGEQI--DVPVYQEGTDVSPVEIVRHGLEQAAENKNDYVFIDTAGRLQI 198 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + LM + + D P +L V+DA TGQNA+ E F+ TG+I+TK+D Sbjct: 199 DEKLMQELADI------KDLAHPDEILLVVDAMTGQNAVNTAEGFNDKLDVTGVILTKLD 252 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G RGG + I P+ F+G GE + DL+ F ++ I G D Sbjct: 253 GDTRGGAALSIRAVTGKPIKFVGQGEKMEDLDVFHPDRMASRILGMGD 300 >gi|167758974|ref|ZP_02431101.1| hypothetical protein CLOSCI_01320 [Clostridium scindens ATCC 35704] gi|167663381|gb|EDS07511.1| hypothetical protein CLOSCI_01320 [Clostridium scindens ATCC 35704] Length = 449 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 86/304 (28%), Positives = 152/304 (50%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S + KL+ ++ S RL +D V+E L+++ L+ +D+ V + ++ + + Sbjct: 3 FDSLTEKLQNIFKNLRSKGRLTEDDVKEALKEIKRALLAADVNFKVVKDFIKNVQERAIG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + K++ + VI++ G+ G GKTT KL Sbjct: 63 QDVMNGLNPGQMVIKIVNEELVKLMGSETTEIALQPGSAITVIMMAGLQGAGKTTTTAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K G +L A D +R AAI QL++ ++ + + +A A + AQ Sbjct: 123 AGKYKVKGKNPLLVACDVYRPAAIKQLQVNGEKQGVEVFAMGESHKPSNIAKAAIEHAQK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 ++I+DTAGRLH + +MA + ++ + H + V+DA TGQ+A+ + Sbjct: 183 NGNRIVILDTAGRLHIDEDMMAELAEIKEAVN------VHQTILVIDAMTGQDAVNVAKE 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G G+I+TK+DG RGG + + P+ ++G+GE ++DLE F ++ I Sbjct: 237 FNEKIGVDGVIVTKLDGDTRGGAALSVKAVTGKPILYVGMGEKLSDLEQFYPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|167037689|ref|YP_001665267.1| signal recognition particle protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116104|ref|YP_004186263.1| signal recognition particle protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326389503|ref|ZP_08211070.1| signal recognition particle protein [Thermoanaerobacter ethanolicus JW 200] gi|166856523|gb|ABY94931.1| signal recognition particle protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929195|gb|ADV79880.1| signal recognition particle protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325994508|gb|EGD52933.1| signal recognition particle protein [Thermoanaerobacter ethanolicus JW 200] Length = 446 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/205 (34%), Positives = 108/205 (52%), Gaps = 6/205 (2%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VI++VG+ G GKTT GKL+ + G +L A D R AAI QL++ + Sbjct: 101 PAVIMMVGLQGSGKTTACGKLANLLKKQGKNPLLVACDVVRPAAIKQLQVVGANVNVPVF 160 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + +A + A++ DV+IIDTAGRLH + LM + + + ++ P Sbjct: 161 TMGDKVNPVDIAKASIDYARSHNSDVIIIDTAGRLHIDEELMEELVNIKKAVQ------P 214 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 +L V+DA TGQ+A+ F+ TG+I+TK+DG RGG + I + P+ ++G Sbjct: 215 DEILLVVDAMTGQDAVNVASSFNERLDITGVILTKLDGDTRGGAALSIKAVTQKPIKYVG 274 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 GE + DLEPF ++ I G D Sbjct: 275 TGEKLTDLEPFYPDRMASRILGMGD 299 >gi|256822050|ref|YP_003146013.1| signal recognition particle protein [Kangiella koreensis DSM 16069] gi|256795589|gb|ACV26245.1| signal recognition particle protein [Kangiella koreensis DSM 16069] Length = 466 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 112/206 (54%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT GKL+ + K VM+A+ D +R AAI QL+ A A F Sbjct: 100 PVVILMAGLQGAGKTTSAGKLAHLLQTREKKSVMVASADVYRPAAIKQLETVAGEVGATF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S +A A K+A+ + +DV+IIDTAGRL + +M I + ++ Sbjct: 160 FPSSTDQKPIDIANNAIKEAKKQFIDVVIIDTAGRLAIDEAMMDEIKALHAAIE------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+D+ TGQ+A + F+ TG+I+TK DG ARGG + I P+ F+ Sbjct: 214 PTETLFVVDSMTGQDAANTAKAFNDALPLTGVILTKADGDARGGAALSIRHITGKPIKFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+GE I+ LEPF + ++ I G D Sbjct: 274 GMGEKIDQLEPFHPERVASRILGMGD 299 >gi|329118039|ref|ZP_08246752.1| signal recognition particle protein [Neisseria bacilliformis ATCC BAA-1200] gi|327465927|gb|EGF12199.1| signal recognition particle protein [Neisseria bacilliformis ATCC BAA-1200] Length = 455 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 86/286 (30%), Positives = 147/286 (51%), Gaps = 21/286 (7%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLTKRYAKDVSVQRVLYDVSELIHK 94 +D ++ L ++ L+ +D+ + V + K+ E+ L + +++++ ++ V +++ Sbjct: 24 EDNIKPALREVRLALLEADVALPVVRDFVAKVKEKALGREISENLTAEQAFITV---VNQ 80 Query: 95 MLMPLSKPFNWDFSHRPHVILVV---GVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDT 149 L+ L N + VV G+ G GKTT +GKL++ K D K++L + D Sbjct: 81 ALVELMGGANSSLNLAAAAPAVVLMAGLQGAGKTTTVGKLARLLKTQDKKKKILLVSTDV 140 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI+QL++ A++ ADF S + +A A QA+ DVL++DTAGRL + Sbjct: 141 YRPAAIEQLRLLAEQVQADFFPSNVSQKPVEIARAALAQAKRGFYDVLMVDTAGRLAIDQ 200 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 +M I ++ L P L V+DA GQ+A+ + F+ TG+I+TKMDG Sbjct: 201 EMMDEIKELHAALD------PVETLFVVDAMLGQDAVNTAQAFNEALPLTGVILTKMDGD 254 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F G GE + LE F ++ I G D Sbjct: 255 SRGGAALSVRKITGKPIKFFGTGEKTDGLEAFHPDRIASRILGMGD 300 >gi|119478672|ref|ZP_01618562.1| signal recognition particle protein [marine gamma proteobacterium HTCC2143] gi|119448398|gb|EAW29650.1| signal recognition particle protein [marine gamma proteobacterium HTCC2143] Length = 456 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 91/309 (29%), Positives = 153/309 (49%), Gaps = 23/309 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + I RL +D +++ L ++ L+ +D+ + V + ++ + + Sbjct: 2 FETLTERLSHSLKSITGQARLTEDNIKDTLREVRMALLEADVALPVVKDFIDTVKQRAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q + V++ + M+ ++ N + P VIL+ G+ G GKTT + KL Sbjct: 62 QDVGKSLNPGQMFVKIVNDELETMMGSANESLNLS-TQPPAVILMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 ++ + + K VM+ + D +R AAI QL+ A A F S + A +A+ Sbjct: 121 ARFLKEKEKKKVMVVSADVYRPAAIKQLETLATEVEATFFPSSDDQKPIDIVNGAIAEAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 + DVLI+DTAGRL + +MA I ++ HA P L V+DA TGQ+A Sbjct: 181 VQFADVLIVDTAGRLAIDEAMMAEIKQL---------HAAINPVETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 ++F+ TG+I+TK D +RGG + + P+ FLGVGE L+PF + Sbjct: 232 TAKVFNDALPLTGVILTKADADSRGGAALSVRQITGKPIKFLGVGEKTTALDPFHPDRIA 291 Query: 308 AVITGCLDY 316 + I G D Sbjct: 292 SRILGMGDM 300 >gi|291522193|emb|CBK80486.1| signal recognition particle protein [Coprococcus catus GD/7] Length = 447 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 89/307 (28%), Positives = 154/307 (50%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ ++ S RL + V+ L+++ L+ +D+ V ++ + + + Sbjct: 3 FESLSDKLQNVFKNLRSKGRLTEADVKASLKEVKMALLEADVNFKVVKQFINSVTERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + ++ + + S+ VI++ G+ G GKTT K+ Sbjct: 63 QDVMNSLTPGQMVIKIVNEEMVALMGSETTEIKLNNSNELTVIMMAGLQGAGKTTTSAKI 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K+ G K +L A D +R AAI QL++ ++ + +A A + A+ Sbjct: 123 AGKLKAKGRKPLLVACDVYRPAAIKQLQVNGEKQGVPVFSMGDHQNPVDIAKAAIEHAKN 182 Query: 192 KKVDVLIIDTAGRLHNNSILM---AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 ++V+I+DTAGRLH + +M A I K I+V + V+DA TGQ+A+ Sbjct: 183 NDLNVVILDTAGRLHVDETMMEELANIQKAIKV---------DQTIFVVDAMTGQDAVNV 233 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F+ G+I+TKMDG RGG + I P+ ++G+GE ++DLE F ++ Sbjct: 234 AKSFNEQIELDGVILTKMDGDTRGGAALSIRAVTGKPILYVGMGEKLSDLEQFYPDRMAS 293 Query: 309 VITGCLD 315 I G D Sbjct: 294 RILGMGD 300 >gi|317178547|dbj|BAJ56335.1| signal recognition particle protein [Helicobacter pylori F30] Length = 448 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 152/297 (51%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ VA+++++++ ++ + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L L +L LS + F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVL+ Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + ++ L PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMQELKEVKETLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I +P+ F+G GE I DL+ FV + + G D Sbjct: 235 SGVVISKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291 >gi|169853092|ref|XP_001833227.1| signal recognition particle protein [Coprinopsis cinerea okayama7#130] gi|116505605|gb|EAU88500.1| signal recognition particle protein [Coprinopsis cinerea okayama7#130] Length = 574 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 147/286 (51%), Gaps = 23/286 (8%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA--------KDVS-----VQRVLYDVS 89 D +E+ L+ SD+ V + + +++ K A K+ S +Q+ ++D Sbjct: 29 DATLKEITAALLESDVNVKLVASLRQKVKAKVKAALDGQGEKKEPSNKKHLIQKAVFD-- 86 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 EL+ ++ P +P+ R +VI+ VG+ G GKTT KL+ G K + DT Sbjct: 87 ELVA-LVDPGVEPYK-PVKGRTNVIMAVGLQGNGKTTTCTKLAAYYQKRGFKSAIVCADT 144 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+ A DQ + + + S ++ ++A + ++ + ++ +V+I+DT+GR Sbjct: 145 FRAGAFDQTRQSCTKAKIAYFGSYTETNPVSIAQQGVQKFKKERFEVVIVDTSGRHKQER 204 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 L G+MI + + + P +VL VLDA+ GQ A Q + F A +I+TKMDG Sbjct: 205 EL---FGEMIEISEAVKPD--MTVL-VLDASIGQAAEGQAKAFKESADFGAIIVTKMDGH 258 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 A+GGG I V K P+ FLGVGE ++DL+ F + F + + G D Sbjct: 259 AKGGGAISAVAATKTPIIFLGVGEHLHDLDRFSPQPFISKLLGLGD 304 >gi|123441193|ref|YP_001005180.1| signal recognition particle protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088154|emb|CAL10942.1| signal recognition particle protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 453 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 114/212 (53%), Gaps = 13/212 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT + KL K + + K V++ + D +R AAI QL+ A Sbjct: 97 AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQGVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S++ + A +QA+ K DVLI+DTAGRLH + +M I ++ Sbjct: 157 IDFFPSDVQEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQV-------- 208 Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 HA P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ FLGVGE + LEPF ++ I G D Sbjct: 268 KPIKFLGVGEKSDALEPFHPDRVASRILGMGD 299 >gi|197119794|ref|YP_002140221.1| signal recognition particle protein [Geobacter bemidjiensis Bem] gi|197089154|gb|ACH40425.1| signal recognition particle protein [Geobacter bemidjiensis Bem] Length = 453 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 92/290 (31%), Positives = 148/290 (51%), Gaps = 20/290 (6%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLY 86 +++ + D +RE + L+ +D+ V ++ VE++ + +V V ++++ Sbjct: 21 VMTEENVKDALRE-VRLALLEADVNFKVVKEFVEKVRGRAVGTEVLQSLAPGQQVIKIVH 79 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 D EL+ +LM + + D + +P V I++VG+ G GKTT GKL+K + K +L Sbjct: 80 D--ELV--LLMGGEEDNSLDLAAKPPVAIMLVGLQGAGKTTSCGKLAKFLKAQRKKPLLV 135 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 D +R AAI+QLK+ + + SE + A + A DV+I DTAGR Sbjct: 136 PADVYRPAAIEQLKVLGRQLDIEVFGSEATQKPLEICRAAHRYATLNGFDVVIFDTAGRH 195 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 + LM + + IR D AP +L V DA TGQ A+ F+ G TG+I+TK Sbjct: 196 QIDDYLMNEL-EGIR-----DELAPREILFVADAMTGQEAVNVASGFNDRLGITGVILTK 249 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +DG A+GG + I PV F+G+GE ++ L+ F A + I G D Sbjct: 250 LDGDAKGGAALSIKAVTGKPVKFVGLGEKLDALDVFHADRLVSRILGMGD 299 >gi|157115970|ref|XP_001652739.1| signal recognition particle 54 kda protein [Aedes aegypti] gi|108876679|gb|EAT40904.1| signal recognition particle 54 kda protein [Aedes aegypti] Length = 357 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 147/307 (47%), Gaps = 21/307 (6%) Query: 15 RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT-- 72 RK+T S S II+ LD ++E + L+ +D+ + + +K+ E + + Sbjct: 8 RKITNALHSLSK------ATIINEEVLDSMLKE-ICTALLEADVNIRLVKKLRENVKSVI 60 Query: 73 --KRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 A ++ +R++ EL+ K++ P KP+ RP+VI+ VG+ G GKTT Sbjct: 61 DFDEMAGGLNKRRMIQSAVFKELV-KLVDPGVKPYQ-PVKGRPNVIMFVGLQGSGKTTTC 118 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+ K L DTFR+ A DQ+K A + F S D +A + Sbjct: 119 TKLAYHYQKKNWKSCLVCADTFRAGAYDQIKQNATKARIPFYGSYTEVDPVVIAQDGVDM 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 + + + +I+DT+GR L + + +K P +++ V+DAT GQ Q Sbjct: 179 FKKEGFEFIIVDTSGRHKQEESLFEEMLAVATAVK------PDNIIFVMDATIGQACEAQ 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F +I+TK+DG A+GGG + V P+ F+G GE I+DLEPF K F + Sbjct: 233 AKAFKEKVDIGSVIITKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDLEPFKTKPFIS 292 Query: 309 VITGCLD 315 + G D Sbjct: 293 KLLGMGD 299 >gi|208435047|ref|YP_002266713.1| signal recognition particle protein [Helicobacter pylori G27] gi|208432976|gb|ACI27847.1| signal recognition particle protein [Helicobacter pylori G27] Length = 448 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L +G + ++ R D + +EL+ L+++D+ VA+++++++ ++ + Sbjct: 5 LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLSGIGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138 Q+ L L +L LS + F+ P V+L+ G+ G GKTT KL+ + Sbjct: 65 QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 KV+L A D R AA++QLK+ ++ + V E +A A K+A+ + DVL+ Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIASNALKRAKEAQFDVLL 180 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +D+AGRL + LM + ++ +L PH VL V DA +GQ+ ++ F+ G Sbjct: 181 VDSAGRLAIDKELMQELKEVKGILN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G++++K D ++GG + I +P+ F+G GE I DL+ FV + + G D Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291 >gi|32477733|ref|NP_870727.1| signal recognition particle protein [Rhodopirellula baltica SH 1] gi|32448287|emb|CAD77804.1| signal recognition particle protein [Rhodopirellula baltica SH 1] gi|327537880|gb|EGF24580.1| signal recognition particle protein [Rhodopirellula baltica WH47] Length = 491 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 94/312 (30%), Positives = 149/312 (47%), Gaps = 38/312 (12%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK- 65 A +SLS KLT+G LK+ +E L+ +D+ +V + Sbjct: 12 AFKSLSGKGKLTEGNMRDGLKI--------------------VEQSLLEADVSYSVVKDF 51 Query: 66 ---IVEELLTKRYAKDVSVQ----RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118 + E+ L KR + Q R++YD EL+ L P+ N + P +I++ G Sbjct: 52 MGHVSEKALGKRVLLSLRPQEELVRIVYD--ELVET-LGPVDSALNLK-ADGPTIIMLCG 107 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 + G GKTT GKL+K + + + +L A D R AAI+QLK+ + D Sbjct: 108 LQGSGKTTTCGKLTKLLQEQNITPLLVAADLQRPAAIEQLKVIGSQLGVPVHAETDHKDP 167 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 + + A+ V+I+DTAGRL ++ LMA + K+ R + P V V+D Sbjct: 168 VKVCQAGVEMARRDGNRVVILDTAGRLAIDAELMAELKKIDRKV------GPDQVYLVVD 221 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 TGQ+A+ F+ G++MTK+DG ARGG L+ + +P+ F+G GE + L Sbjct: 222 GMTGQDAVNSAGAFNDALELDGVVMTKLDGDARGGALLSVKQVTGVPIKFMGTGEHFDAL 281 Query: 299 EPFVAKDFSAVI 310 EPF + ++ I Sbjct: 282 EPFRPEGMASRI 293 >gi|170046875|ref|XP_001850971.1| signal recognition particle 54 kda protein [Culex quinquefasciatus] gi|167869479|gb|EDS32862.1| signal recognition particle 54 kda protein [Culex quinquefasciatus] Length = 515 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 90/307 (29%), Positives = 149/307 (48%), Gaps = 21/307 (6%) Query: 15 RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT-- 72 RK+T S S II++ LD + +E+ L+ +D+ + + +K+ E + + Sbjct: 19 RKITNALHSLSK------ATIINAEVLD-AMLKEICTALLEADVNIRLVKKLRENVKSVI 71 Query: 73 --KRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 A ++ +R++ EL+ K++ P KP+ RP++I+ VG+ G GKTT Sbjct: 72 DFDEMAGGLNKRRMIQTAVFKELV-KLVDPGVKPYQ-PVKGRPNIIMFVGLQGSGKTTTC 129 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+ K L DTFR+ A DQ+K A + F S D +A + + Sbjct: 130 TKLAYHYQKKNWKSCLVCADTFRAGAYDQIKQNATKARIPFYGSYTEVDPVVIAQDGVEM 189 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 + + + +I+DT+GR L + + +K P +++ V+DAT GQ Q Sbjct: 190 FKKEGFEFIIVDTSGRHKQEESLFEEMLAVATAIK------PDNIIFVMDATIGQACEAQ 243 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F +I+TK+DG A+GGG + V P+ F+G GE I+DLEPF K F + Sbjct: 244 AKAFKEKVDIGSVIITKLDGHAKGGGALSAVAATSSPIIFIGTGEHIDDLEPFKTKPFIS 303 Query: 309 VITGCLD 315 + G D Sbjct: 304 KLLGMGD 310 >gi|302338385|ref|YP_003803591.1| signal recognition particle protein [Spirochaeta smaragdinae DSM 11293] gi|301635570|gb|ADK80997.1| signal recognition particle protein [Spirochaeta smaragdinae DSM 11293] Length = 443 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 88/285 (30%), Positives = 141/285 (49%), Gaps = 12/285 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSV-QRVLYDVSE 90 IS + + D V EE++ L+ +D+ + V ++ V EE + K V+ Q+ + V++ Sbjct: 22 ISEKNIQDAV-EEIKVALLEADVNLRVVRRFVNRTIEEAKGEAVLKAVNPGQQFVKIVND 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 I ++L + IL++G+ G GKTT KL ++ G +V+L A D Sbjct: 81 KIVQLLGDEHQDLELKGPDALSSILMMGLQGSGKTTTSAKLGLRLKKEGRRVLLVAADLV 140 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AA+DQLK+ + + E D L EA K A + +I+DT+GRLH + Sbjct: 141 RPAAVDQLKVLGKQVDLEVFSLEKEKDPVKLVGEAKKYAIKSSFNTMIVDTSGRLHLDEE 200 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 +M I + RVL P L V D+ TGQ A+ + F G +G+++TK D Sbjct: 201 MMKQIVDIKRVLD------PQEQLFVADSMTGQEAVTIAKSFDEQVGISGVVLTKFDSDT 254 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + + P+ ++GVGE DL+PF + ++ I G D Sbjct: 255 RGGAALSLKSVTGKPIKYVGVGEKPEDLDPFYPERIASRILGMGD 299 >gi|307264844|ref|ZP_07546406.1| signal recognition particle protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920102|gb|EFN50314.1| signal recognition particle protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 446 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/205 (34%), Positives = 108/205 (52%), Gaps = 6/205 (2%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VI++VG+ G GKTT GKL+ + G +L A D R AAI QL++ + Sbjct: 101 PAVIMMVGLQGSGKTTACGKLANLLKKQGKNPLLVACDVVRPAAIKQLQVVGANVNVPVF 160 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + +A + A++ DV+IIDTAGRLH + LM + + + ++ P Sbjct: 161 TMGDKVNPVDIAKASIDYARSHNSDVIIIDTAGRLHIDEELMEELVNIKKAVQ------P 214 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 +L V+DA TGQ+A+ F+ TG+I+TK+DG RGG + I + P+ ++G Sbjct: 215 DEILLVVDAMTGQDAVNVASSFNERLDITGVILTKLDGDTRGGAALSIKAVTQKPIKYVG 274 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 GE + DLEPF ++ I G D Sbjct: 275 AGEKLTDLEPFYPDRMASRILGMGD 299 >gi|294793324|ref|ZP_06758469.1| signal recognition particle protein [Veillonella sp. 6_1_27] gi|294455755|gb|EFG24120.1| signal recognition particle protein [Veillonella sp. 6_1_27] Length = 450 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 95/317 (29%), Positives = 156/317 (49%), Gaps = 34/317 (10%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+E + ++ +D V L + L+ +D+ VA+ V+ + K Sbjct: 3 FDSLSEKLQEAFQSLKGKGKITEDDVNLALRQVRTALLEADVNFMVAKDFVKSIKEKALG 62 Query: 77 KDV-----SVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVGK 124 ++V Q V+ V++ + +L M SKP P +I++VG+ G GK Sbjct: 63 EEVFGSLNPAQTVIKIVNDELTALLGGTQSRIMISSKP--------PTIIMLVGLQGAGK 114 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAY 183 TT GKL+ + G + ML A D +R AAI QL++ + E G++ + Sbjct: 115 TTTAGKLAVYLRKQGKRPMLVAADVYRPAAITQLQVVGKQIDIPVFADETPGANPVDIVR 174 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 A +Q+ DV+IIDTAGRL + +LM + + ++ PH +L V+D+ GQ Sbjct: 175 RAVEQSTHMLKDVVIIDTAGRLAIDEVLMDELSNIKAAVR------PHEILLVVDSMIGQ 228 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 +A+ + F+ G G+I+TK+DG ARGG + I +P+ F GV E ++ + F Sbjct: 229 DAVTTAQTFNEKLGVDGVILTKLDGDARGGAALSIKAVTGLPIKFTGVSEKMDGFDVFYP 288 Query: 304 KDFSAVITGCLDYGEEK 320 ++ I LD G+ K Sbjct: 289 DRMASRI---LDLGDFK 302 >gi|297743482|emb|CBI36349.3| unnamed protein product [Vitis vinifera] Length = 431 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 112/223 (50%), Gaps = 7/223 (3%) Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 KML P KP + V++ VG+ G GKTT K + G K L DTFR+ Sbjct: 85 KMLDP-GKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A DQLK A + F S + SD +A E ++ + + D++I+DT+GR + L Sbjct: 144 AFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEAALFE 203 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + ++ + P V+ V+D++ GQ A Q + F +I+TKMDG A+GG Sbjct: 204 EMRQVSEATR------PDLVIFVMDSSIGQAAFDQAQAFRQSVAVGAVIITKMDGHAKGG 257 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316 G + V K PV F+G GE +++ E F K F + + G D+ Sbjct: 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300 >gi|291299748|ref|YP_003511026.1| signal recognition particle protein [Stackebrandtia nassauensis DSM 44728] gi|290568968|gb|ADD41933.1| signal recognition particle protein [Stackebrandtia nassauensis DSM 44728] Length = 519 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 84/281 (29%), Positives = 140/281 (49%), Gaps = 15/281 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + + + + +VS Q+V+ V+E + +L Sbjct: 28 DATAREIRMALLEADVALPVVKSFIHNVKERCRGAEVSKALNPGQQVIKIVNEELITILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ ++ + P VI++ G+ G GKTT+ GKL+K + D + ML A D R A+ Q Sbjct: 88 GEARRLSF-AKNPPTVIMLAGLQGAGKTTLAGKLAKWLKDQNHQPMLVAADLQRPNAVQQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L++ +R + E GS D +A E+ A D++IIDTAGRL + +MA Sbjct: 147 LQVLGERAGVEVYAPEPGSGVGDPVKVAKESLAHATRHARDIVIIDTAGRLGVDEEMMAQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D P L V+DA GQ+A+ E F G +G++++K+DG ARGG Sbjct: 207 -AAAIR-----DATNPDETLFVIDAMIGQDAVATAEAFRDGVGISGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ F +GE + D + F + ++ I G D Sbjct: 261 ALSVRQVTGQPIMFASIGEKLEDFDVFYPERMASRILGMGD 301 >gi|282165325|ref|YP_003357710.1| signal recognition 54 kDa protein [Methanocella paludicola SANAE] gi|282157639|dbj|BAI62727.1| signal recognition 54 kDa protein [Methanocella paludicola SANAE] Length = 442 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 95/302 (31%), Positives = 153/302 (50%), Gaps = 32/302 (10%) Query: 28 LKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDV 79 LK I + ++ ++D D V ++++ LI++D+ V + + +I E LT+ + Sbjct: 10 LKSAIQKLANAGKIDKEIIDDVVKDIQRALIQADVNVKLVMKLSNRIKERALTEAPPAGM 69 Query: 80 S----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 V R++Y +EL++ ++ + P + P I++VG+ G GKTT KL++ Sbjct: 70 DSREHVLRIVY--TELVN--IIGKATPIALE----PQTIMMVGLQGSGKTTTTAKLARFF 121 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 S GLK + DT+R A DQL ++ F DA A+ K+ Q K D Sbjct: 122 SRKGLKPAVICADTYRPGAYDQLSQLCEKLGVMFYGERDNKDAVAIVRNGLKETQ--KYD 179 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRL--DPHAPHSVLQVLDATTGQNALRQVEMFH 253 V I+DTAGR + ++I+ +K + + H L VLDA GQ A Q + F+ Sbjct: 180 VRIVDTAGRHALET-------ELIKEMKDIWGLTNFTHRFL-VLDAAIGQQASEQAKAFN 231 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 G TG+++TK+DGTA+GGG + V + F+GVGE +DLE F F + + G Sbjct: 232 DAVGITGVVITKLDGTAKGGGALSAVSDTNTSIAFIGVGETPDDLERFDPDGFISRLLGM 291 Query: 314 LD 315 D Sbjct: 292 GD 293 >gi|89053248|ref|YP_508699.1| signal recognition particle subunit FFH/SRP54 (srp54) [Jannaschia sp. CCS1] gi|88862797|gb|ABD53674.1| signal recognition particle subunit FFH/SRP54 (srp54) [Jannaschia sp. CCS1] Length = 501 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 88/283 (31%), Positives = 142/283 (50%), Gaps = 15/283 (5%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 +D VR L ++ L+ +D+ + VA+ ++ + K V+ Q+V+ V + + Sbjct: 24 EDDVRTALREVRVALLEADVSLPVARTFIKNVEKKATGAAVTKSITPGQQVIKIVHDELI 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRS 152 L P + P IL+VG+ G GKTT KL+K++ D G KV++A+ DT R Sbjct: 84 ATLRGADDPGVLKIDNPPAPILMVGLQGSGKTTTTAKLAKRLKDREGKKVLMASLDTNRP 143 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AA++QL I + D + G D +A A QA DV ++DTAGRLH ++ L+ Sbjct: 144 AAMEQLAILGTQIGVDTLPIVPGEDPVQIAKRAKTQASLAGYDVYMLDTAGRLHIDAELI 203 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 A + D P L V+D TGQ+A+ F G +G+++T+MDG RG Sbjct: 204 A------QAAAVRDVANPRETLLVVDGLTGQDAVNVATEFDDKIGVSGVVLTRMDGDGRG 257 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + + P+ F+G+GE ++ +E F + + I G D Sbjct: 258 GAALSMREITGKPIRFVGLGEKMDAIETFEPERIAGRILGMGD 300 >gi|322825983|gb|EFZ30786.1| signal recognition particle, putative [Trypanosoma cruzi] Length = 565 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 90/295 (30%), Positives = 145/295 (49%), Gaps = 17/295 (5%) Query: 31 GITDIISSRRL--DDGVREELEDL---LIRSDIGVA----VAQKIVEELLTKRYAKDVSV 81 G +SS+ L +D V+E L ++ L+++D+ V + Q I E+ A ++ Sbjct: 90 GAISKMSSKPLLGEDDVKEFLNEVARALLQADVHVTTVKELQQTIRAEVAITSEAVGLNK 149 Query: 82 QRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140 +++L V + K+L P KPF + ++++ VG+ G GKTT K + GL Sbjct: 150 RKMLQSAVFSGLKKILDPGVKPF-IPAKGKNNIVMFVGLQGSGKTTSCTKYAAYFQRKGL 208 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 K L DTFR+ A DQL+ A + F S +D +A E + + +K D++IID Sbjct: 209 KTALVCADTFRAGAYDQLRQNATKAKIRFYGSLTEADPVIIAKEGVAELEKEKYDLIIID 268 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 T+GR S L + ++ +K P+ ++ V+ AT GQ Q F Sbjct: 269 TSGRHKQESALFEEMKQVQEAVK------PNDIVFVMSATDGQGIREQARQFKEKVPVGS 322 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V K P+ F+G GE D E F + F + + G D Sbjct: 323 VIVTKLDGHAKGGGALAAVAMTKSPIVFIGTGEHFEDFELFQPESFVSRMLGMGD 377 >gi|257469002|ref|ZP_05633096.1| Signal recognition particle, subunit FFH/SRP54 [Fusobacterium ulcerans ATCC 49185] Length = 446 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/282 (28%), Positives = 140/282 (49%), Gaps = 15/282 (5%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93 + ++E L+++ L+ +D+ V + ++L K DV Q+ + V++ + Sbjct: 24 ESNIKEALKEVRMSLLEADVNYKVVKDFTNKILEKSVGTDVLKGINPGQQFIKVVNDELV 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 ++L + + P V+++ G+ G GKTT KL+ + G V++ D +R A Sbjct: 84 ELLGGTNSRLTKGVRN-PTVLMLSGLQGAGKTTFAAKLANYLKKQGESVLMVGADVYRPA 142 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 AI QL++ ++ E DA A+ +A+ +IIDTAGRLH + LM Sbjct: 143 AIKQLQVLGEQVDVPVYAEEDNKDAVAICEHGLAKAKELNSTYMIIDTAGRLHIDEKLMD 202 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + + + ++ P +L V+DA GQ+A+ E F+ V G+++TK+DG RGG Sbjct: 203 ELRNIKKAVR------PQEILLVVDAMIGQDAVNLAESFNNVLSIDGIVLTKLDGDTRGG 256 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+GVGE I+D+E F + + I G D Sbjct: 257 AALSIKSVVGKPIKFVGVGERIDDIELFHPERLVSRILGMGD 298 >gi|218441087|ref|YP_002379416.1| signal recognition particle protein [Cyanothece sp. PCC 7424] gi|218173815|gb|ACK72548.1| signal recognition particle protein [Cyanothece sp. PCC 7424] Length = 488 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 92/290 (31%), Positives = 143/290 (49%), Gaps = 29/290 (10%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85 D IS + + ++E + LI +D+ + V + V E+ K +V +++ Sbjct: 20 DKISQSNIQEALKE-VRRALISADVNLQVVKGFVAEVEKKALGAEVISGVNPGQQFIKIV 78 Query: 86 YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 YD EL+ M +PL+K S P VIL+ G+ G GKTT KL+ + Sbjct: 79 YD--ELVKVMGESNIPLAKA-----STPPTVILMAGLQGTGKTTATAKLALFLRKEKRTC 131 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIID 200 ++ A D +R AAIDQL + + E+G+DA +A ++A+ VD +IID Sbjct: 132 LMVATDVYRPAAIDQLITLGQQI--EVPVFEMGTDADPVEIARLGVEKAKELGVDTVIID 189 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL + +M + ++ +K P L V+DA TGQ A FH G TG Sbjct: 190 TAGRLQIDQDMMGELARIKATVK------PDDTLLVVDAMTGQEAATLTHTFHEQIGITG 243 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 I+TK+DG RGG + + P+ F+GVGE + L+PF + ++ I Sbjct: 244 AILTKLDGDTRGGAALSVRQVSGQPIKFVGVGEKVEALQPFYPERMASRI 293 >gi|160874405|ref|YP_001553721.1| signal recognition particle protein [Shewanella baltica OS195] gi|160859927|gb|ABX48461.1| signal recognition particle protein [Shewanella baltica OS195] gi|315266640|gb|ADT93493.1| signal recognition particle protein [Shewanella baltica OS678] Length = 457 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 157/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL ++ V+E L ++ L+ +D+ + V ++ V + + Sbjct: 2 FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++VS Q + V + K + ++ + + P VI++ G+ G GKTT + KL Sbjct: 62 QEVSKSLSPGQAFIKIVQSELEKSMGEANEALDL-ATQPPAVIMMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + K V++ + D +R AAI QL+ A + +F S++ +A A A+ Sbjct: 121 GKFLRERHKKSVLVVSVDVYRPAAIKQLETLAQEVAVEFFPSDVSQKPIDIAKAAIAHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K +DV+I+DTAGRLH + +M I + +K P L V+DA TGQ+A + Sbjct: 181 LKFIDVVILDTAGRLHVDEAMMDEIKGLHAAVK------PIETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|24473790|gb|AAL55410.1| SRP54-like protein [Leishmania major] Length = 487 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/284 (29%), Positives = 138/284 (48%), Gaps = 15/284 (5%) Query: 42 DDGVRE---ELEDLLIRSDIGVAVAQK----IVEELLTKRYAKDVSVQRVLYD-VSELIH 93 +D V+E E+ L+++D+ V + +K I EL ++ +++L + V + Sbjct: 25 EDDVKELMNEIARALLQADVNVTIVKKLQVSIRTELALAEEGAGLNKRKILQNAVFNGLK 84 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 ++L P KPF R +V++ VG+ G GKTT K + G K L DTFR+ Sbjct: 85 RILDPGVKPF-LPVKGRHNVVMFVGLQGSGKTTSCTKYAAYFQRKGFKTALVCADTFRAG 143 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A DQL+ A + F S +D A+A E + + +K D++I+DT+GR S L Sbjct: 144 AYDQLRQNATKAKVRFYGSLTEADPVAIAKEGVAELKKEKYDLIIVDTSGRHKQESALFE 203 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + ++ +K P+ ++ V+ AT GQ Q F + +I+TK+D +GG Sbjct: 204 EMKQVEEAVK------PNDIVFVMSATDGQAVEEQARNFKEMVAVGSVIVTKLDCQTKGG 257 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317 G + V + P+ F+G GE D + F + F + G D G Sbjct: 258 GALSAVAATRSPIVFIGTGEHFEDFDLFNPERFVQKMLGMGDIG 301 >gi|71651473|ref|XP_814414.1| signal recognition particle [Trypanosoma cruzi strain CL Brener] gi|70879383|gb|EAN92563.1| signal recognition particle, putative [Trypanosoma cruzi] Length = 487 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 90/295 (30%), Positives = 145/295 (49%), Gaps = 17/295 (5%) Query: 31 GITDIISSRRL--DDGVREELEDL---LIRSDIGVA----VAQKIVEELLTKRYAKDVSV 81 G +SS+ L +D V+E L ++ L+++D+ V + Q I E+ A ++ Sbjct: 12 GAISKMSSKPLLGEDDVKEFLNEVARALLQADVHVTTVKELQQTIRAEVAITSEAVGLNK 71 Query: 82 QRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140 +++L V + K+L P KPF + ++++ VG+ G GKTT K + GL Sbjct: 72 RKMLQTAVFSGLRKILDPGVKPF-IPAKGKTNIVMFVGLQGSGKTTSCTKYAAYFQRKGL 130 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 K L DTFR+ A DQL+ A + F S +D +A E + + +K D++IID Sbjct: 131 KTALVCADTFRAGAYDQLRQNATKAKIRFYGSLTEADPVIIAKEGVAELEKEKYDLIIID 190 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 T+GR S L + ++ +K P+ ++ V+ AT GQ Q F Sbjct: 191 TSGRHKQESALFEEMKQVQEAVK------PNDIVFVMSATDGQGIREQARQFKEKVPVGS 244 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V K P+ F+G GE D E F + F + + G D Sbjct: 245 VIITKLDGHAKGGGALAAVAMTKSPIVFIGTGEHFEDFELFQPESFVSRMLGMGD 299 >gi|331091002|ref|ZP_08339844.1| signal recognition particle protein [Lachnospiraceae bacterium 2_1_46FAA] gi|330405224|gb|EGG84760.1| signal recognition particle protein [Lachnospiraceae bacterium 2_1_46FAA] Length = 449 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 85/304 (27%), Positives = 151/304 (49%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S + KL+ ++ S RL +D V+ L ++ L+ +D+ V + ++++ + Sbjct: 3 FDSLTEKLQNVFKNLRSKGRLTEDDVKTALREVKMALLEADVNFKVVKGFIKDVQERAVG 62 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + K++ + + VI++ G+ G GKTT KL Sbjct: 63 QDVMSGLNPGQMVIKIVNEELVKLMGSETTEIKLEPGQATTVIMMAGLQGAGKTTTTAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K G K +L A D +R AAI QL++ ++ + +A A + A Sbjct: 123 AGKFKLKGKKPLLVACDVYRPAAIKQLQVNGEKQGVEVFTMGENHKPVNIAKAALEHAAK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +++I+DTAGRLH + +M + ++ + H + V+DA TGQ+A+ Sbjct: 183 NGNNIVILDTAGRLHVDEEMMEELQQIKEAV------TVHQTILVVDAMTGQDAVNVAGT 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G G+I+TK+DG RGG + I P++++G+GE ++DLE F ++ I Sbjct: 237 FNDKIGIDGVIVTKLDGDTRGGAALSIRAVTGKPIFYVGMGEKLSDLEQFYPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|317063249|ref|ZP_07927734.1| signal recognition particle protein [Fusobacterium ulcerans ATCC 49185] gi|313688925|gb|EFS25760.1| signal recognition particle protein [Fusobacterium ulcerans ATCC 49185] Length = 448 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/282 (28%), Positives = 140/282 (49%), Gaps = 15/282 (5%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93 + ++E L+++ L+ +D+ V + ++L K DV Q+ + V++ + Sbjct: 26 ESNIKEALKEVRMSLLEADVNYKVVKDFTNKILEKSVGTDVLKGINPGQQFIKVVNDELV 85 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 ++L + + P V+++ G+ G GKTT KL+ + G V++ D +R A Sbjct: 86 ELLGGTNSRLTKGVRN-PTVLMLSGLQGAGKTTFAAKLANYLKKQGESVLMVGADVYRPA 144 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 AI QL++ ++ E DA A+ +A+ +IIDTAGRLH + LM Sbjct: 145 AIKQLQVLGEQVDVPVYAEEDNKDAVAICEHGLAKAKELNSTYMIIDTAGRLHIDEKLMD 204 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + + + ++ P +L V+DA GQ+A+ E F+ V G+++TK+DG RGG Sbjct: 205 ELRNIKKAVR------PQEILLVVDAMIGQDAVNLAESFNNVLSIDGIVLTKLDGDTRGG 258 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+GVGE I+D+E F + + I G D Sbjct: 259 AALSIKSVVGKPIKFVGVGERIDDIELFHPERLVSRILGMGD 300 >gi|224823839|ref|ZP_03696948.1| signal recognition particle protein [Lutiella nitroferrum 2002] gi|224604294|gb|EEG10468.1| signal recognition particle protein [Lutiella nitroferrum 2002] Length = 452 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 85/286 (29%), Positives = 147/286 (51%), Gaps = 14/286 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 ++ + D +RE + L+ +D+ + V + + + + ++V Q ++ V+E Sbjct: 22 LTDANIQDAMRE-VRMALLEADVALPVVKTFISHVKERALGQEVMGSLTPGQALVGVVNE 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDT 149 + K++ + N + P ++L+ G+ G GKTT +GKL+K + + KV++ + D Sbjct: 81 ELTKLMGEKNDALNL-AAVPPAIVLMAGLQGAGKTTTVGKLAKLLKETQKKKVLVVSADV 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI+QLK A + ++ S+ +A A A+ DVL++DTAGRL + Sbjct: 140 YRPAAIEQLKTLAGQIGVEWFPSDGTQKPVEIARAAVDHAKRHFFDVLMVDTAGRLAIDD 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 +M I + L P L V+DA GQ+A+ + F+ TG+I+TKMDG Sbjct: 200 AMMQEIKALHASLN------PIETLFVVDAMQGQDAVNTAQAFNEALPLTGVILTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ARGG + + P+ F+GVGE + LEPF + ++ I G D Sbjct: 254 ARGGAALSVRHVTGKPIKFIGVGEKLTGLEPFHPERMASRILGMGD 299 >gi|16127883|ref|NP_422447.1| signal recognition particle protein [Caulobacter crescentus CB15] gi|221236704|ref|YP_002519141.1| signal recognition particle GTPase, SRP [Caulobacter crescentus NA1000] gi|13425409|gb|AAK25615.1| signal recognition particle protein [Caulobacter crescentus CB15] gi|220965877|gb|ACL97233.1| signal recognition particle GTPase, SRP [Caulobacter crescentus NA1000] Length = 508 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 93/297 (31%), Positives = 157/297 (52%), Gaps = 33/297 (11%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-------------- 80 ++S + +D+ +RE + L+ +D VA +V++ ++K AKD++ Sbjct: 21 VLSEKDIDEALRE-VRVALLEAD----VALPVVKDFISK--AKDLAGGEAVIRSVKPADQ 73 Query: 81 VQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139 V +++YD L+ ++ +P + + + P VIL+ G+ G GKTT GKL+ ++S + Sbjct: 74 VVKIVYD--GLVD--MLGGEEPTGLNLALNPPSVILMAGLQGSGKTTTTGKLALRLSKSD 129 Query: 140 LK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 K V++A+ DT R AA++QL A + D + G A +A A A+ DVLI Sbjct: 130 RKKVLVASLDTRRPAAMEQLATLARQVEVDSLPIVAGQSAPDIAKRALSAAKLGGYDVLI 189 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +DTAGR + +M+ ++ R+ +P + V D+ TGQ+A+R + FH Sbjct: 190 LDTAGRTTLDESMMSEAAEIARI------ASPSETILVADSLTGQDAVRTAKAFHERLPL 243 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TGLI+T+ DG RGG + + +P+ FLG GE I+ L+ F A+ + I G D Sbjct: 244 TGLILTRADGDGRGGAALSMRHVTGLPIKFLGAGEKIDQLDVFDARRVAGRILGQGD 300 >gi|296814538|ref|XP_002847606.1| signal recognition particle receptor subunit alpha [Arthroderma otae CBS 113480] gi|238840631|gb|EEQ30293.1| signal recognition particle receptor subunit alpha [Arthroderma otae CBS 113480] Length = 646 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 138/283 (48%), Gaps = 40/283 (14%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSK-- 101 +ED L++ ++ A ++ E EL+ K+ A S+ L + + K+L P S Sbjct: 357 MEDHLLKKNVAREAAVRLCEGVQKELVGKKTASFQSIDSALRAGMESSLRKILTPTSSLD 416 Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 P N RP+VI VVGVNGVGK+T + KL + KV++AA DTFR Sbjct: 417 LLREIEVVTSPTNKQQPRRPYVISVVGVNGVGKSTNLSKLCFFLLQNKYKVLIAACDTFR 476 Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200 S A++QL++ A R + E G DAA +A +A A A DV++ID Sbjct: 477 SGAVEQLRVHA-RNLKELSARENVGHVELYEKGYGKDAANVAKDAVSYAAANDFDVVLID 535 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH----AVA 256 TAGR HN+ LM+ + K + P +L V +A G +++ Q F+ A Sbjct: 536 TAGRRHNDQRLMSSLEKFAKFAN------PDKILMVGEALVGTDSVMQARNFNQAFGAGR 589 Query: 257 GTTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G G I++K D G L+ +V IP+ FLGVG+ DL Sbjct: 590 GLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 632 >gi|191638588|ref|YP_001987754.1| Signal recognition particle protein Ffh [Lactobacillus casei BL23] gi|227534903|ref|ZP_03964952.1| signal recognition particle protein Ffh [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631962|ref|ZP_04674993.1| signal recognition particle GTPase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066648|ref|YP_003788671.1| signal recognition particle GTPase [Lactobacillus casei str. Zhang] gi|190712890|emb|CAQ66896.1| Signal recognition particle protein Ffh [Lactobacillus casei BL23] gi|227187659|gb|EEI67726.1| signal recognition particle protein Ffh [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526427|gb|EEQ65428.1| signal recognition particle GTPase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439055|gb|ADK18821.1| Signal recognition particle GTPase [Lactobacillus casei str. Zhang] gi|327382629|gb|AEA54105.1| Signal recognition particle protein [Lactobacillus casei LC2W] gi|327385824|gb|AEA57298.1| Signal recognition particle protein [Lactobacillus casei BD-II] Length = 478 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 96/316 (30%), Positives = 154/316 (48%), Gaps = 22/316 (6%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A E LS +L K F+ K K +DI + R E+ L+ +D+ V + Sbjct: 1 MAFEGLS--ERLQKAFSGLRRKGKVSESDIRDAMR-------EIRLALLEADVNFDVVKT 51 Query: 66 IVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 ++ + TK +V Q+++ V++ + K + + P N H P VI++ G+ Sbjct: 52 FIKNVRTKALGAEVLESLTPSQQIIKIVNDELVKTMGEAAVPLNK-APHIPTVIMMAGLQ 110 Query: 121 GVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 G GKTT +GKLSK M + + +L A D +R AAIDQL+ + + D Sbjct: 111 GAGKTTTVGKLSKYLMDNDSARPLLIAADVYRPAAIDQLQTIGKQLNVPVFEMGTDVDPV 170 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 + + A+ K D ++IDTAGRL + LM + K I+ L P+ +L V+DA Sbjct: 171 EIVRQGLATAKENKNDYVLIDTAGRLQIDEKLMNEL-KNIKELAH-----PNDILLVVDA 224 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQ A+ + F+ TG+++TK+DG RGG + I P+ F+G GE ++ L+ Sbjct: 225 MTGQAAVDVAKGFNEQLDITGVVLTKLDGDTRGGAALSIRAVTGKPIKFIGQGEKMDALD 284 Query: 300 PFVAKDFSAVITGCLD 315 F + I G D Sbjct: 285 VFYPDRMANRILGMGD 300 >gi|194466489|ref|ZP_03072476.1| signal recognition particle protein [Lactobacillus reuteri 100-23] gi|194453525|gb|EDX42422.1| signal recognition particle protein [Lactobacillus reuteri 100-23] Length = 481 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 84/280 (30%), Positives = 140/280 (50%), Gaps = 16/280 (5%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML 96 +RE + ++ L+ +D+ V + V+ + K +V Q+++ V++ + K++ Sbjct: 28 LRETMREIRLALLEADVNFKVVKDFVKTVREKAAGAEVLKGLNPAQQIVKIVNDELTKLM 87 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAI 155 + P N H P VI++VG+ G GKTT GKL+ ++ + + M A D +R AAI Sbjct: 88 GEEAVPLNK-APHIPTVIMMVGLQGAGKTTTAGKLALRLKNENHARPMFIAADVYRPAAI 146 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 QL+ AD+ D + E + A+ D +IIDTAGRL + LM + Sbjct: 147 TQLQQVADQIDVPVFEKGTDVDPVEIVREGMEVAKKNHNDYVIIDTAGRLQIDEQLMDEL 206 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 + ++ P+ +L V+D+ TGQNA+ + F TG+I+TK+DG RGG Sbjct: 207 ANIKELVN------PNEILLVIDSMTGQNAVNTAQGFDDKLNITGVILTKLDGDTRGGAA 260 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+G GE + DL+ F ++ I G D Sbjct: 261 MSIRAVTGKPIKFVGEGEKMEDLDVFHPDRMASRILGMGD 300 >gi|24372934|ref|NP_716976.1| signal recognition particle protein [Shewanella oneidensis MR-1] gi|24347070|gb|AAN54421.1|AE015579_10 signal recognition particle protein Ffh [Shewanella oneidensis MR-1] Length = 457 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 96/305 (31%), Positives = 156/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIV----EELLT 72 F + + +L + +I RL ++ V+E L ++ L+ +D+ + V ++ V E + Sbjct: 2 FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 61 Query: 73 KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + AK +S Q + V + K + ++ + + P V+++ G+ G GKTT + KL Sbjct: 62 QEVAKSLSPGQAFIKIVQSELEKSMGEANQALDL-ATQPPAVVMMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + K V++ + D +R AAI QL+ A +F S++ +A A A+ Sbjct: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLATEVDVEFFPSDVSQKPIDIAKAAIAHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K +DV+I+DTAGRLH + +M I + LK P L V+DA TGQ+A + Sbjct: 181 LKFIDVVILDTAGRLHVDEAMMDEIKALHAALK------PIETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|256832215|ref|YP_003160942.1| signal recognition particle protein [Jonesia denitrificans DSM 20603] gi|256685746|gb|ACV08639.1| signal recognition particle protein [Jonesia denitrificans DSM 20603] Length = 525 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 146/302 (48%), Gaps = 28/302 (9%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 FAS S +L ++ S RL D E+ L+ +D+ V+V + + + + Sbjct: 2 FASLSDRLTSTFKNLRSKGRLSEADIDATIREIRRALLDADVAVSVVRDFTGAVRERALS 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V + + +L ++P + P VI++ G+ G GKTT+ GKL Sbjct: 62 AEVSGALNPAQQVVKIVHDELVTVLGGTARPLQRAKTG-PTVIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS------------DAA 179 + + + G ML A D R A+ QLKI +R G+ D Sbjct: 121 AVHLREQGHTPMLIAADLQRPNAVQQLKIVGERAGVPVYAPHPGNQGEGATPGLSAGDPV 180 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+A ++ A+A++ D +I+DTAGRL ++ LM IR D +PH +L V+DA Sbjct: 181 AIARAGYETAKARQHDTVIVDTAGRLGVDAELMEQAAD-IR-----DAVSPHEILFVIDA 234 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 GQ+A+ F G TG++++K+DG ARGG + + P+ F GE + D E Sbjct: 235 MIGQDAVATARAFADGVGFTGVVLSKLDGDARGGAALSVAKVTGQPILFASTGENLTDFE 294 Query: 300 PF 301 F Sbjct: 295 VF 296 >gi|157870075|ref|XP_001683588.1| signal recognition particle [Leishmania major strain Friedlin] gi|68126654|emb|CAJ04436.1| putative signal recognition particle [Leishmania major strain Friedlin] Length = 519 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/284 (29%), Positives = 138/284 (48%), Gaps = 15/284 (5%) Query: 42 DDGVRE---ELEDLLIRSDIGVAVAQK----IVEELLTKRYAKDVSVQRVLYD-VSELIH 93 +D V+E E+ L+++D+ V + +K I EL ++ +++L + V + Sbjct: 25 EDDVKELMNEIARALLQADVNVTIVKKLQVSIRTELALAEEGAGLNKRKILQNAVFNGLK 84 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 ++L P KPF R +V++ VG+ G GKTT K + G K L DTFR+ Sbjct: 85 RILDPGVKPF-LPVKGRHNVVMFVGLQGSGKTTSCTKYAAYFQRKGFKTALVCADTFRAG 143 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A DQL+ A + F S +D A+A E + + +K D++I+DT+GR S L Sbjct: 144 AYDQLRQNATKAKVRFYGSLTEADPVAIAKEGVAELKKEKYDLIIVDTSGRHKQESALFE 203 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + ++ +K P+ ++ V+ AT GQ Q F + +I+TK+D +GG Sbjct: 204 EMKQVEEAVK------PNDIVFVMSATDGQAVEEQARNFKEMVAVGSVIVTKLDCQTKGG 257 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317 G + V + P+ F+G GE D + F + F + G D G Sbjct: 258 GALSAVAATRSPIVFIGTGEHFEDFDLFNPERFVQKMLGMGDIG 301 >gi|332285431|ref|YP_004417342.1| signal recognition particle protein [Pusillimonas sp. T7-7] gi|330429384|gb|AEC20718.1| signal recognition particle protein [Pusillimonas sp. T7-7] Length = 471 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/218 (35%), Positives = 113/218 (51%), Gaps = 16/218 (7%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG----------LKVMLAAGDTFRSAAIDQ 157 S P VIL+ G+ G GKTT GKL+K +S+ G KV++ + D +R AAI+Q Sbjct: 101 SQPPAVILMAGLQGAGKTTSTGKLAKWLSEGGHIQGGRKTGKKKVLVVSADVYRPAAIEQ 160 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 LK A + DF+ + + +A A+ DVLI+DTAGRL + +M Sbjct: 161 LKTVAAQVKVDFLPTNTLQKPEDIGRQALDHAKRHHYDVLIVDTAGRLGIDEAMMG---- 216 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 IR L D P L V+DA GQ+A+ + F TG+++TKMDG ARGG + Sbjct: 217 EIRALH--DLLTPIETLFVVDAMQGQDAVNVAQAFSQALPLTGVVLTKMDGDARGGAALS 274 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + P+ F+G+ E ++ LEPF + + I G D Sbjct: 275 VRHVTGKPLKFVGLSEKMDGLEPFHPERMAQRILGMGD 312 >gi|154509174|ref|ZP_02044816.1| hypothetical protein ACTODO_01695 [Actinomyces odontolyticus ATCC 17982] gi|153798808|gb|EDN81228.1| hypothetical protein ACTODO_01695 [Actinomyces odontolyticus ATCC 17982] Length = 527 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 84/274 (30%), Positives = 138/274 (50%), Gaps = 18/274 (6%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 LI +D+ + V ++ ++ K Y S Q+V+ V E + ++L ++ N+ Sbjct: 38 LIDADVALPVVRQFTTQVREKAYGAARSKALNPGQQVVSIVHEELVEILGGATRELNFAE 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P V ++ G+ G GKTT+ GKL K + + G V+L A D R A+ QL++ +R Sbjct: 98 SG-PTVFMLAGLQGAGKTTLAGKLGKWLREEGKTVLLVASDLQRPNAVQQLQVVGERAGV 156 Query: 168 DFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 E G+ D +A + A+ ++V+I+DTAGRL + +M + + Sbjct: 157 KVWAPEPGNGVGDPVEVARSGVEFARQSGINVVIVDTAGRLGVDQEMME------QAIAI 210 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 D PH ++ VLDA GQ+A+ F G TG++++K+DG ARGG + + Sbjct: 211 RDAVNPHEIMFVLDAMVGQDAVSTSTAFRDGVGFTGVVLSKLDGDARGGAALSVRGVTGA 270 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 P+ F GEG++D E F A + I LD G+ Sbjct: 271 PILFASTGEGLDDFERFHADRMAGRI---LDMGD 301 >gi|284039605|ref|YP_003389535.1| signal recognition particle protein [Spirosoma linguale DSM 74] gi|283818898|gb|ADB40736.1| signal recognition particle protein [Spirosoma linguale DSM 74] Length = 439 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 69/212 (32%), Positives = 108/212 (50%), Gaps = 6/212 (2%) Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 N + P +IL+ G+ G GKTT GKL+ + G V+L A D +R AAIDQLK+ + Sbjct: 92 NINIKGDPAIILIAGLQGSGKTTFSGKLASYLKKQGRNVLLVAADIYRPAAIDQLKVLGE 151 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + + +A +A A A+ ++I+DTAGRL + +M I + R + Sbjct: 152 QVGVEVYAEPENKNAVQIAQNAIALARKTGKKIVIVDTAGRLAVDEAMMQEIEALKRAI- 210 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 AP L V+D+ TGQ+A+ + F+ G+++TK+DG ARGG + I Sbjct: 211 -----APSETLFVVDSMTGQDAVNTAKTFNERLNFDGVVLTKLDGDARGGAALSIKTVVN 265 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+ GE + L+ F ++ I G D Sbjct: 266 KPIKFISTGEKMEALDVFYPDRMASRILGMGD 297 >gi|167469821|ref|ZP_02334525.1| signal recognition particle protein [Yersinia pestis FV-1] Length = 302 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 153/305 (50%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL ++ ++E L ++ L+ +D+ + V + + + + Sbjct: 2 FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKERAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V + + ++ N + P V+L+ G+ G GKTT + KL Sbjct: 62 HEVNKSLTPGQEFVKIVKNELISAMGEVNNELNL-AAQPPAVVLMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + K V++ + D +R AAI QL+ A DF S+ + A +QA+ Sbjct: 121 GKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQGVGIDFFPSDAQEKPIDIVNRALQQAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVLI+DTAGRLH + +M I ++ +K P L V+DA TGQ+A + Sbjct: 181 LKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+++TK+DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKSDALEPFHPDRIASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|58617285|ref|YP_196484.1| Signal recognition particle protein [Ehrlichia ruminantium str. Gardel] gi|58416897|emb|CAI28010.1| Signal recognition particle protein [Ehrlichia ruminantium str. Gardel] Length = 450 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 83/273 (30%), Positives = 148/273 (54%), Gaps = 15/273 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-----VSVQRVLYDVS 89 +ISS D V EE++ L+ +D+ ++V + + ++ K + + Q V+ + Sbjct: 21 VISSEDFD-SVMEEVKVALLEADVALSVVKSFINDIKDKIVGETTIKGVLPTQMVIKKIQ 79 Query: 90 ELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 + + ++L + + D S +P VI++VG+ GVGKTT KL+ ++ + +V++A+ D Sbjct: 80 DCLIEILGVEKQ--DLDLSAKPFAVIMMVGLQGVGKTTTTAKLALRLKNKKKEVLMASLD 137 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 +R AA QL+I + + +A A A+ +VLI DTAGRLH + Sbjct: 138 LYRPAAQTQLEILGKQIDVKTLPIIEKQQPIDIAKRAITVAKESNCNVLIFDTAGRLHVD 197 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 I+M + K I+ + +P V+ V DA GQ+A+ V+ F + G TG+I+T++DG Sbjct: 198 EIMMEEL-KAIKAI-----TSPSEVILVADAMIGQDAVNVVKSFDSNIGITGIILTRIDG 251 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +RGG + + ++ P+ FL GE ++DL+ F Sbjct: 252 DSRGGAALSMKMSTGTPIKFLATGEKLSDLDDF 284 >gi|159117703|ref|XP_001709071.1| SRP GTPase [Giardia lamblia ATCC 50803] gi|157437186|gb|EDO81397.1| SRP GTPase [Giardia lamblia ATCC 50803] Length = 530 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 84/239 (35%), Positives = 116/239 (48%), Gaps = 15/239 (6%) Query: 81 VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140 VQR++ V EL+ ML P PF +R +VI+ VG+ G GKTT K G Sbjct: 77 VQRIV--VQELV-SMLSPERPPFR-PVRNRANVIMFVGLQGAGKTTTCVKFGAYYKRKGW 132 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 +V L DTFR+ A DQLK F S D +A + K + +++I+D Sbjct: 133 RVGLVCCDTFRTGAFDQLKQNCTAVKLPFYGSYSEKDPVQIAQDGVKHFVSLNFELIILD 192 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 T+GR L +K +D PH + VLD++ GQ A Q + F Sbjct: 193 TSGRHRQEEALFTE-------MKLIDSAVQPHDHVFVLDSSIGQAAYEQADAFSNAVEIG 245 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 +I+TK+DG +RGGG + V K P+ FLG GE I DLE F F +V+ G YG+ Sbjct: 246 SVILTKLDGHSRGGGALAAVSATKAPIVFLGTGEKIEDLEFFDPSRFVSVMLG---YGD 301 >gi|304437009|ref|ZP_07396972.1| signal recognition particle protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369960|gb|EFM23622.1| signal recognition particle protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 458 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 93/280 (33%), Positives = 143/280 (51%), Gaps = 14/280 (5%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKM 95 ++D +RE + L+ +D+ V + V + + ++V + Q V+ V E + + Sbjct: 28 VNDAMRE-VRMALLEADVNFKVVKDFVRRVKERAVGQEVLDTLTAAQAVVKIVDEELTAL 86 Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 + N + P VI++VG+ G GKTT GKL+ + G + +L A D +R AAI Sbjct: 87 MGGTESRLNIS-PNPPTVIMLVGLQGSGKTTSAGKLALMLKKQGKRPLLVADDIYRPAAI 145 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 QL++ + V S+ DA A+A A + + DV+IIDTAGRL + LM + Sbjct: 146 KQLEVIGGKVDVP-VFSQGQEDAVAIARAAIAHSSSHANDVVIIDTAGRLQIDETLMQEL 204 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 + +K PH +L V+DA TGQ A+ E F A G G+IMTK+DG ARGG Sbjct: 205 RDIKAEVK------PHEILLVVDAMTGQEAVNVAEAFDASLGLDGVIMTKLDGDARGGAA 258 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+G+GE + LE F ++ I G D Sbjct: 259 LSIKAVTGCPLKFVGMGEKLEPLEVFHPDRMASRILGMGD 298 >gi|238926150|ref|ZP_04657910.1| signal recognition particle protein Ffh [Selenomonas flueggei ATCC 43531] gi|238886040|gb|EEQ49678.1| signal recognition particle protein Ffh [Selenomonas flueggei ATCC 43531] Length = 458 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 93/280 (33%), Positives = 143/280 (51%), Gaps = 14/280 (5%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKM 95 ++D +RE + L+ +D+ V + V + + ++V + Q V+ V E + + Sbjct: 28 VNDAMRE-VRMALLEADVNFKVVKDFVRRVKERAVGQEVLDTLTAAQAVVKIVDEELTAL 86 Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 + N + P VI++VG+ G GKTT GKL+ + G + +L A D +R AAI Sbjct: 87 MGGTESRLNIS-PNPPTVIMLVGLQGSGKTTSAGKLALMLKKQGKRPLLVADDIYRPAAI 145 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 QL++ + V S+ DA A+A A + + DV+IIDTAGRL + LM + Sbjct: 146 KQLEVIGGKVDVP-VFSQGQEDAVAIARAAIAHSSSHANDVVIIDTAGRLQIDETLMQEL 204 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 + +K PH +L V+DA TGQ A+ E F A G G+IMTK+DG ARGG Sbjct: 205 RDIKAEVK------PHEILLVVDAMTGQEAVNVAEAFDASLGLDGVIMTKLDGDARGGAA 258 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+G+GE + LE F ++ I G D Sbjct: 259 LSIKAVTGCPLKFVGMGEKLEPLEVFHPDRMASRILGMGD 298 >gi|332297535|ref|YP_004439457.1| signal recognition particle protein [Treponema brennaborense DSM 12168] gi|332180638|gb|AEE16326.1| signal recognition particle protein [Treponema brennaborense DSM 12168] Length = 468 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 94/313 (30%), Positives = 155/313 (49%), Gaps = 19/313 (6%) Query: 10 SLSWIRKLTKGFASTSLKL--KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 ++ + K+T F+ K+ K IT+ + +++ V E+++ L+ +D+ + V ++ V Sbjct: 23 TVRMLEKITNTFSDVVRKVSGKSSITE----KNIEETV-EQIKIALLEADVNLRVVRRFV 77 Query: 68 EELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + + + V SV Q+ + + + I +L + VIL++G+ G Sbjct: 78 NSTIEEAKGEKVLRSVDPGQQFVKIIYDKIVSLLGDAKQDLKLKGPDTQSVILLLGLQGA 137 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT KL+ +++ G K +LAA D R AAI QL + ++ V E DA +A Sbjct: 138 GKTTAASKLAARLAKEGRKPLLAACDLVRPAAIQQLCVLGEKIGIP-VYKEDSKDAVRVA 196 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 A A+ D LI+DTAGRL + +M I + + + +P VL V DA TG Sbjct: 197 KNALAYAKKNGFDTLIVDTAGRLQIDESMMDEIAAVKKAV------SPDEVLLVADAMTG 250 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ + F TG+I+TK D ARGG + + P+ F+G GE +D EPF Sbjct: 251 QNAVDIAKSFDERLSLTGVILTKFDSDARGGAALSLKSVTGKPILFIGTGEKTSDFEPFH 310 Query: 303 AKDFSAVITGCLD 315 + ++ I G D Sbjct: 311 PERIASRILGMGD 323 >gi|47570278|ref|ZP_00240927.1| signal recognition particle protein [Bacillus cereus G9241] gi|47553042|gb|EAL11444.1| signal recognition particle protein [Bacillus cereus G9241] Length = 404 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K ML A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ D ++IDTAGRLH + LM + K+ V K Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+DA TGQ+A+ + FH G TG+++TK+DG RGG + I P+ Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ LE F + ++ I G D Sbjct: 273 FAGMGEKLDALEAFHPERMASRILGMGD 300 >gi|325957954|ref|YP_004289420.1| Signal recognition 54 kDa protein [Methanobacterium sp. AL-21] gi|325329386|gb|ADZ08448.1| Signal recognition 54 kDa protein [Methanobacterium sp. AL-21] Length = 447 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 90/282 (31%), Positives = 142/282 (50%), Gaps = 24/282 (8%) Query: 45 VREELEDL---LIRSDIGVAV----AQKIVEELLTKRYAKDVS----VQRVLYDVSELIH 93 V+E ++D+ LI+SD+ + + ++ I + L + K V+ V R++Y+ EL++ Sbjct: 31 VKEVIKDIQRALIQSDVNIKLVLNLSKTIEDRSLNEEPPKGVTPKEHVVRIVYE--ELVN 88 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 + S + RP+ IL +G+ G GKTT IGKL+K + G + + DT+R A Sbjct: 89 LLG---SSAQEVEIDKRPYKILFMGLQGSGKTTSIGKLTKYLQKKGFNPAIVSTDTWRPA 145 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A +QL + + DA LA K A KK DV+I+DTAGR S L+A Sbjct: 146 AYEQLLQLTEPMNVPVYGDHENKDALDLARTGLKAA--KKNDVIIVDTAGRHKEESDLLA 203 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + + ++ P V+ V+D T GQ A Q F+ +I+TK+DG+A+GG Sbjct: 204 EMESLSTIVD------PDEVIMVIDGTIGQQAGEQALAFNNATKIGSIIITKLDGSAKGG 257 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + V P+ F+G GE + D E F F + + G D Sbjct: 258 GALSAVAEIGAPIKFIGTGERVEDFEAFDPDRFISRLLGMGD 299 >gi|227530556|ref|ZP_03960605.1| Sec family type I general secretory pathway protein signal recognition particle protein [Lactobacillus vaginalis ATCC 49540] gi|227349562|gb|EEJ39853.1| Sec family type I general secretory pathway protein signal recognition particle protein [Lactobacillus vaginalis ATCC 49540] Length = 484 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 83/280 (29%), Positives = 143/280 (51%), Gaps = 16/280 (5%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML 96 +RE + ++ L+ +D+ AV + V+++ K +V Q+++ V++ + +++ Sbjct: 28 LRETMREIRLALLEADVNFAVVKDFVKKVREKAAGAEVLKGLNPAQQIVKIVNDELTELM 87 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAI 155 + P N SH P VI++VG+ G GKTT GKL+ ++ + + + A D +R AAI Sbjct: 88 GEEAVPLNKS-SHIPTVIMMVGLQGAGKTTTAGKLALRLKNEDKARPLFIAADVYRPAAI 146 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 QLK AD+ D + + + A+ D +IIDTAGRL + LM + Sbjct: 147 TQLKQVADQIDVPVFEKGTDVDPVEIVRQGMEVAKQNHNDYVIIDTAGRLQIDEQLMDEL 206 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 + +++ P +L V+D+ TGQNA+ + F TG+++TK+DG RGG Sbjct: 207 ANIKQLVN------PDEILLVIDSMTGQNAVNTAQGFDDKLDITGVVLTKLDGDTRGGAA 260 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+G GE + DL+ F ++ I G D Sbjct: 261 MSIRAVTGKPIKFVGEGEKMEDLDVFHPDRMASRILGMGD 300 >gi|325273825|ref|ZP_08140010.1| signal recognition particle protein [Pseudomonas sp. TJI-51] gi|324101031|gb|EGB98692.1| signal recognition particle protein [Pseudomonas sp. TJI-51] Length = 458 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 94/306 (30%), Positives = 158/306 (51%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L +D +++ L ++ L+ +D+ + V + V + + Sbjct: 2 FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSVKDRAVG 61 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 +VS R L +++ L L N D + P V+L+ G+ G GKTT GK Sbjct: 62 TEVS--RSLTPGQAFVKIVQAELESLMGAANEDLALNAAPPAVVLMAGLQGAGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL+ A+ F S+I A+A A ++A Sbjct: 120 LARFLKERKKKSVMVVSADVYRPAAIKQLETLANDIGVTFFPSDISQKPVAIAEAAIREA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K +DV+I+DTAGRLH ++ +MA I + +K P L V+DA TGQ+A Sbjct: 180 KLKFIDVVIVDTAGRLHIDADMMAEIKALHAAVK------PIETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+++TK+DG ARGG + + P+ F+G+GE LEPF ++ Sbjct: 234 KAFGEALPLTGVVLTKVDGDARGGAALSVRAITGKPIKFIGMGEKTEALEPFHPDRVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|257068178|ref|YP_003154433.1| signal recognition particle subunit FFH/SRP54 (srp54) [Brachybacterium faecium DSM 4810] gi|256558996|gb|ACU84843.1| signal recognition particle subunit FFH/SRP54 (srp54) [Brachybacterium faecium DSM 4810] Length = 530 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 83/262 (31%), Positives = 136/262 (51%), Gaps = 15/262 (5%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ VAV ++ + + ++VS Q+V+ V++ + ++L + Sbjct: 33 EIRRALLDADVAVAVVREFTGRVRERALGEEVSKALNPAQQVVKIVNDELVEVLGGATGE 92 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 ++ + P VI++ G+ G GKTT+ GKL+K M G +L A D R A+ QL++ Sbjct: 93 LHF-AKNPPTVIMLAGLQGAGKTTLAGKLAKWMKAEGHTPLLVAADLQRPNAVTQLQVVG 151 Query: 163 DRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 +R E G+ D +A AQ ++ DV+I+DTAGRL + +M + I Sbjct: 152 ERAGVPVFAPEPGNGVGDPVLVAMNGVSTAQFQQHDVVIVDTAGRLGIDEEMMEQ-ARNI 210 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 R D PH L V+DA GQ+A R E F G TG++++K+DG ARGG + I Sbjct: 211 R-----DAVTPHETLFVVDAMIGQDAARVAEAFRDGVGFTGVVLSKLDGDARGGAALSIT 265 Query: 280 VTHKIPVYFLGVGEGINDLEPF 301 + P+ F GE +++ E F Sbjct: 266 GVTQRPILFASTGESLDEFERF 287 >gi|311739736|ref|ZP_07713571.1| signal recognition particle protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311305552|gb|EFQ81620.1| signal recognition particle protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 549 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 89/282 (31%), Positives = 145/282 (51%), Gaps = 26/282 (9%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + V + ++ + + +VS Q+V+ V+E + ++L ++ N Sbjct: 38 LLEADVSLTVVRGFIKRIKERARGAEVSEALNPAQQVVKIVNEELIEILGGETRRLNL-A 96 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164 + P VI++ G+ G GKTT+ GKL+K ++ G ML A D R A+ QL+I +R Sbjct: 97 KNPPTVIMLAGLQGAGKTTLAGKLAKHLAKQGHTPMLVACDLQRPGAVQQLQIVGERAEV 156 Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 TS D E+G+ D +A + +A+ K+ DV+IIDTAGRL + LM Sbjct: 157 PTFAPDPGTSLDSNEHEMGTSHGDPVDVAKQGIAEAKQKQHDVVIIDTAGRLGIDETLMT 216 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + IR D P VL V+D+ GQ+A++ E F TG+++TK+DG ARGG Sbjct: 217 Q-ARNIR-----DAVNPDEVLFVIDSMIGQDAVQTAEAFRDGVDFTGVVLTKLDGDARGG 270 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ + GE ++D + F + S+ I G D Sbjct: 271 AALSIREVTGKPIMYASTGEKLDDFDVFHPERMSSRILGMGD 312 >gi|328951033|ref|YP_004368368.1| signal recognition particle protein [Marinithermus hydrothermalis DSM 14884] gi|328451357|gb|AEB12258.1| signal recognition particle protein [Marinithermus hydrothermalis DSM 14884] Length = 432 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 87/305 (28%), Positives = 141/305 (46%), Gaps = 19/305 (6%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQ----KIVEELLT 72 F + S +L+E + + R+ + V E+ L+ +D+ VA+ ++ E+ + Sbjct: 2 FENLSRRLRESLDKLRGRGRITEADLKQVMREIRMSLLEADVNFEVAKAFVARVQEKAIG 61 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++ + ++ +Y + ++ L L K + H ++ +VG+ G GKTT GK Sbjct: 62 QKVLESLTPAEQVYTI---VYNELTDLLGGKAVQPELRHEGNLWFLVGLQGSGKTTTAGK 118 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L++ G + +L A DT R AA +QL+I +R + A + Sbjct: 119 LARYYKSKGRRPLLVAADTQRPAAREQLRILGERVGVPVLEVADNEPPEVTAQRLKDHLK 178 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 D++I+DTAGRL + LM + + VL P L V+DA TGQ AL + Sbjct: 179 TDYRDLVIVDTAGRLQIDEPLMEALARQKAVLN------PTETLLVVDAMTGQEALGVSK 232 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGL++TK+DG ARGG + P+YF G E + LEPF + I Sbjct: 233 TFDERIGVTGLVLTKLDGDARGGAALSARFVTGKPIYFAGTSEKLEGLEPFYPDRLAQRI 292 Query: 311 TGCLD 315 G D Sbjct: 293 LGMGD 297 >gi|134082225|emb|CAL00980.1| unnamed protein product [Aspergillus niger] Length = 585 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 138/283 (48%), Gaps = 40/283 (14%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101 +ED L+R ++ A ++ E EL+ K+ SV L E + K+L P S Sbjct: 296 MEDHLLRKNVAREAAVRLCEGVQRELVGKKTGNFQSVDAALRSAMESSLRKILTPTSSLD 355 Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 P + S RP+VI +VGVNGVGK+T +GK+ + +V++AA DTFR Sbjct: 356 LLREIDAVTSPTSKQQSPRPYVISIVGVNGVGKSTNLGKICYFLLQNKYRVLIAACDTFR 415 Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200 S A++QL++ A R + E G DAA +A +A + A DV++ID Sbjct: 416 SGAVEQLRVHA-RNLRELSARENVGEVELYEKGYGKDAANVAKDAVEYGAANHFDVVLID 474 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258 TAGR HN+ LM+ + K + P + V +A G +++ Q F+ GT Sbjct: 475 TAGRRHNDQRLMSSLEKFAKFAN------PDKIFMVGEALVGTDSVMQARNFNQAFGTGR 528 Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G I++K D G L+ +V IP+ FLGVG+ DL Sbjct: 529 NLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 571 >gi|308162746|gb|EFO65124.1| SRP GTPase [Giardia lamblia P15] Length = 530 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 84/239 (35%), Positives = 116/239 (48%), Gaps = 15/239 (6%) Query: 81 VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140 VQR++ V EL+ ML P PF +R +VI+ VG+ G GKTT K G Sbjct: 77 VQRIV--VQELV-SMLSPERPPFR-PVRNRANVIMFVGLQGAGKTTTCVKFGAYYKRKGW 132 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 +V L DTFR+ A DQLK F S D +A + K +++I+D Sbjct: 133 RVGLVCCDTFRTGAFDQLKQNCTAVRLPFYGSYSEKDPVQIAQDGVKHFIGLNFELIILD 192 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 T+GR L +K +D PH + VLD++ GQ A Q + F Sbjct: 193 TSGRHRQEEALFT-------EMKLIDSAVQPHDHVFVLDSSIGQAAYEQADAFSNAVEIG 245 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 +I+TK+DG +RGGG + V K P+ FLG GE I DLE F + F +V+ G YG+ Sbjct: 246 SVILTKLDGHSRGGGALAAVSATKAPIVFLGTGEKIEDLEFFDSSRFVSVMLG---YGD 301 >gi|224419142|ref|ZP_03657148.1| signal recognition particle protein [Helicobacter canadensis MIT 98-5491] gi|253828077|ref|ZP_04870962.1| signal recognition particle protein ffh [Helicobacter canadensis MIT 98-5491] gi|313142648|ref|ZP_07804841.1| signal recognition particle protein [Helicobacter canadensis MIT 98-5491] gi|253511483|gb|EES90142.1| signal recognition particle protein ffh [Helicobacter canadensis MIT 98-5491] gi|313131679|gb|EFR49296.1| signal recognition particle protein [Helicobacter canadensis MIT 98-5491] Length = 446 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 84/295 (28%), Positives = 145/295 (49%), Gaps = 19/295 (6%) Query: 30 EGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83 E + I+ R D + +EL+ L++SD+ V + ++EE+ K + + Sbjct: 7 ESFQNAINKIRFQDDEKALKRAIDELKKTLLKSDVHYKVLKHLLEEVEQKTKLAGIGKES 66 Query: 84 VLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140 L + E ++ +L + P N+ F S P ++L+ G+ G GKTT KL+ + Sbjct: 67 FLNALKESLNHIL---TAPGNYGFIFASKPPTIVLMAGLQGSGKTTTTAKLANYLKTRQK 123 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 KV+LAA D R AA++QL+ + + DF E + K DVL++D Sbjct: 124 KVLLAACDLQRLAAVEQLRQLSHQVEVDFFYEENKTPVEIAKAAKEKAIAGL-YDVLLVD 182 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 +AGRL + LM + + + P+ + V+D+ +GQ+ ++ FH +G Sbjct: 183 SAGRLAIDEALMQELQAIKEAIN------PNEIFYVVDSLSGQDGVKSAATFHEKMNLSG 236 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I++K DG ++GG + I IP+ F+GVGE I DLE F+ + + + G D Sbjct: 237 VILSKFDGDSKGGIALSIAQLLGIPLRFIGVGEKIPDLEVFIPERIVSRLMGAGD 291 >gi|219117644|ref|XP_002179613.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408666|gb|EEC48599.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 448 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 88/288 (30%), Positives = 138/288 (47%), Gaps = 29/288 (10%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSELIHKM---- 95 E+ L+ +D+ V VA ++E + + ++V + +YD EL+ M Sbjct: 12 EVRRALLDADVNVDVADTLIEGVRARSLGQEVLEGVTAEQQFVKAMYD--ELLDMMGGDS 69 Query: 96 LMPLSK-PFNWDFSH-------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 +P+S P N + P VIL+ G+ G GKTT GKL+ + + KV+L A Sbjct: 70 SVPMSDGPSNVPVATLASGTAADPAVILLAGLQGAGKTTAAGKLALFLKEQ-RKVLLVAA 128 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 D +R AAI QL++ + + D + ++A+ + D +I+DTAGR Sbjct: 129 DIYRPAAIKQLQVLGESIGVEVFTKGTDVDPVEIVNAGIQKARDEGYDTVIVDTAGRQVI 188 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 ++ LM + +M R +P L ++DA TGQ A F + G TG I+TKMD Sbjct: 189 DTDLMDELQRMKRA------ASPQETLLIVDAMTGQEAASLTAAFDSAIGLTGAILTKMD 242 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G +RGG + + P+ F+G GE DLEPF ++ I G D Sbjct: 243 GDSRGGAAVSVRGVSGKPIKFVGTGEKTADLEPFYPDRMASRILGMGD 290 >gi|228928893|ref|ZP_04091925.1| Signal recognition particle protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228830700|gb|EEM76305.1| Signal recognition particle protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 449 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K ML A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ D ++IDTAGRLH + LM + K+ V K Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+DA TGQ+A+ + FH G TG+++TK+DG RGG + I P+ Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ LE F + ++ I G D Sbjct: 273 FAGMGEKLDALEAFHPERMASRILGMGD 300 >gi|317035358|ref|XP_001396706.2| signal sequence receptor alpha subunit [Aspergillus niger CBS 513.88] Length = 646 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 138/283 (48%), Gaps = 40/283 (14%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101 +ED L+R ++ A ++ E EL+ K+ SV L E + K+L P S Sbjct: 357 MEDHLLRKNVAREAAVRLCEGVQRELVGKKTGNFQSVDAALRSAMESSLRKILTPTSSLD 416 Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 P + S RP+VI +VGVNGVGK+T +GK+ + +V++AA DTFR Sbjct: 417 LLREIDAVTSPTSKQQSPRPYVISIVGVNGVGKSTNLGKICYFLLQNKYRVLIAACDTFR 476 Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200 S A++QL++ A R + E G DAA +A +A + A DV++ID Sbjct: 477 SGAVEQLRVHA-RNLRELSARENVGEVELYEKGYGKDAANVAKDAVEYGAANHFDVVLID 535 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258 TAGR HN+ LM+ + K + P + V +A G +++ Q F+ GT Sbjct: 536 TAGRRHNDQRLMSSLEKFAKFAN------PDKIFMVGEALVGTDSVMQARNFNQAFGTGR 589 Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G I++K D G L+ +V IP+ FLGVG+ DL Sbjct: 590 NLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 632 >gi|315425933|dbj|BAJ47583.1| signal recognition particle receptor [Candidatus Caldiarchaeum subterraneum] Length = 302 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 92/260 (35%), Positives = 136/260 (52%), Gaps = 23/260 (8%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV----QRVLYDVSELIHKMLMPLSKPFNWDF- 107 L+ +D+ V A IV L DV + VL E + K + PL K + + Sbjct: 37 LVEADVAVETADAIVNSLRHTLLEMDVPRFGDREAVL---KEALKKAIEPLIKVADVNLV 93 Query: 108 ---------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 RP VIL VG NG GKTT + KL+ + G V+LA+ DTFR+ AI+QL Sbjct: 94 LKRVDEARKQGRPAVILFVGPNGSGKTTTVVKLAHYLRKRGYSVILASADTFRAGAIEQL 153 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 + R V G+D AA+A +A +A + +V+V++IDTAGR + L+ + K+ Sbjct: 154 ETLGQRAGFMVVSQSYGADPAAVAVDALNKASSMRVNVVLIDTAGRTELDRGLLEEMRKL 213 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 RV+K P V+ DA G A++Q +MF V G +I++K+D A+GG I I Sbjct: 214 KRVVK------PDFVIYTGDALAGNAAVQQAKMFDEVVGIDYVILSKVDADAKGGSAISI 267 Query: 279 VVTHKIPVYFLGVGEGINDL 298 + P+ FLGVG+ ++DL Sbjct: 268 SHSTGKPLLFLGVGQELDDL 287 >gi|90408719|ref|ZP_01216867.1| signal recognition particle protein Ffh [Psychromonas sp. CNPT3] gi|90310170|gb|EAS38307.1| signal recognition particle protein Ffh [Psychromonas sp. CNPT3] Length = 469 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 113/209 (54%), Gaps = 13/209 (6%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+L+ G+ G GKTT + KL+ + + K V++ + D +R AAI QL+ A +F Sbjct: 100 PAVLLMAGLQGAGKTTSVAKLALLLKNKEKKSVLVVSADVYRPAAIKQLQTLASEVDVEF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S+I +A A A+ K +DV+I+DTAGRLH ++ +M I D HA Sbjct: 160 FPSDISQKPIDIANAAIAHAKKKFIDVVIVDTAGRLHVDTDMMKEIQ---------DLHA 210 Query: 230 ---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA TGQ+A + F+ + TG+I+TK DG ARGG + I P+ Sbjct: 211 AISPIETLFVVDAMTGQDAANTAKAFNEMLPLTGIILTKADGDARGGAALSIRHITGKPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ LE F ++ I G D Sbjct: 271 KFIGMGEKVDALEAFHPDRIASRILGMGD 299 >gi|33866152|ref|NP_897711.1| signal recognition particle protein (SRP54) [Synechococcus sp. WH 8102] gi|33639127|emb|CAE08133.1| signal recognition particle protein (SRP54) [Synechococcus sp. WH 8102] Length = 487 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 80/273 (29%), Positives = 135/273 (49%), Gaps = 22/273 (8%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLM--------PLSKP 102 L+ +D+ + V + V ++ K +V V+ V D +++H+ L+ PL+K Sbjct: 38 LLEADVSLPVVKDFVADVREKAVGAEV-VRGVSPDQKFIQVVHEQLVEVMGGDNAPLAKA 96 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 + P V+L+ G+ G GKTT KL + D G + ++ D +R AAI+QLK Sbjct: 97 -----AEAPTVVLMAGLQGAGKTTATAKLGLHLKDQGRRALMVGADVYRPAAIEQLKTLG 151 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 + + + +A +A+ + D L++DTAGRL ++ +M +M+R+ Sbjct: 152 GQIGVEVFSLGTEAKPEEIAAAGLAKAKEEGFDTLLVDTAGRLQIDTEMME---EMVRIR 208 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 + P VL V+D+ GQ A FH G TG ++TK+DG +RGG + I Sbjct: 209 TAVQ---PDEVLLVVDSMIGQEAAELTRAFHDQVGITGAVLTKLDGDSRGGAALSIRKVS 265 Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + L+PF + ++ I G D Sbjct: 266 GQPIKFIGTGEKVEALQPFHPERMASRILGMGD 298 >gi|42782937|ref|NP_980184.1| signal recognition particle protein [Bacillus cereus ATCC 10987] gi|49478411|ref|YP_037906.1| signal recognition particle protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141643|ref|YP_085186.1| signal recognition particle protein [Bacillus cereus E33L] gi|118479067|ref|YP_896218.1| signal recognition particle subunit FFH/SRP54 (srp54) [Bacillus thuringiensis str. Al Hakam] gi|217961265|ref|YP_002339833.1| signal recognition particle protein [Bacillus cereus AH187] gi|218904975|ref|YP_002452809.1| signal recognition particle protein [Bacillus cereus AH820] gi|225865826|ref|YP_002751204.1| signal recognition particle protein [Bacillus cereus 03BB102] gi|228916482|ref|ZP_04080048.1| Signal recognition particle protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935159|ref|ZP_04097986.1| Signal recognition particle protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947564|ref|ZP_04109854.1| Signal recognition particle protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228986988|ref|ZP_04147114.1| Signal recognition particle protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229092887|ref|ZP_04224021.1| Signal recognition particle protein [Bacillus cereus Rock3-42] gi|229123359|ref|ZP_04252563.1| Signal recognition particle protein [Bacillus cereus 95/8201] gi|229157421|ref|ZP_04285499.1| Signal recognition particle protein [Bacillus cereus ATCC 4342] gi|229186085|ref|ZP_04313254.1| Signal recognition particle protein [Bacillus cereus BGSC 6E1] gi|229197955|ref|ZP_04324670.1| Signal recognition particle protein [Bacillus cereus m1293] gi|301055335|ref|YP_003793546.1| signal recognition particle protein [Bacillus anthracis CI] gi|42738864|gb|AAS42792.1| signal recognition particle protein [Bacillus cereus ATCC 10987] gi|49329967|gb|AAT60613.1| signal recognition particle protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975112|gb|AAU16662.1| signal recognition particle protein [Bacillus cereus E33L] gi|118418292|gb|ABK86711.1| signal recognition particle subunit FFH/SRP54 (srp54) [Bacillus thuringiensis str. Al Hakam] gi|217066657|gb|ACJ80907.1| signal recognition particle protein [Bacillus cereus AH187] gi|218538723|gb|ACK91121.1| signal recognition particle protein [Bacillus cereus AH820] gi|225787793|gb|ACO28010.1| signal recognition particle protein [Bacillus cereus 03BB102] gi|228585534|gb|EEK43637.1| Signal recognition particle protein [Bacillus cereus m1293] gi|228597261|gb|EEK54912.1| Signal recognition particle protein [Bacillus cereus BGSC 6E1] gi|228626148|gb|EEK82897.1| Signal recognition particle protein [Bacillus cereus ATCC 4342] gi|228660135|gb|EEL15771.1| Signal recognition particle protein [Bacillus cereus 95/8201] gi|228690509|gb|EEL44292.1| Signal recognition particle protein [Bacillus cereus Rock3-42] gi|228772766|gb|EEM21206.1| Signal recognition particle protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228812084|gb|EEM58415.1| Signal recognition particle protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824524|gb|EEM70329.1| Signal recognition particle protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228843061|gb|EEM88143.1| Signal recognition particle protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300377504|gb|ADK06408.1| signal recognition particle protein [Bacillus cereus biovar anthracis str. CI] gi|324327742|gb|ADY23002.1| signal recognition particle protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 449 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K ML A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ D ++IDTAGRLH + LM + K+ V K Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+DA TGQ+A+ + FH G TG+++TK+DG RGG + I P+ Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ LE F + ++ I G D Sbjct: 273 FAGMGEKLDALEAFHPERMASRILGMGD 300 >gi|311108979|ref|YP_003981832.1| signal recognition particle protein [Achromobacter xylosoxidans A8] gi|310763668|gb|ADP19117.1| signal recognition particle protein [Achromobacter xylosoxidans A8] Length = 467 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 93/292 (31%), Positives = 140/292 (47%), Gaps = 36/292 (12%) Query: 48 ELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103 E+ L+ +D+ + V ++ V E+ L + A +S + L V +HK L L Sbjct: 33 EVRMALLEADVALPVVREFVARVKEKALGEEVASSLSPGQALVGV---VHKELTSL---M 86 Query: 104 NWDFS----------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAG----------LKVM 143 D P VIL+ G+ G GKTT GKL++ +S+ KV+ Sbjct: 87 GGDLGADSGELSLAVQPPAVILMAGLQGAGKTTTTGKLARWLSEGQHTQHGRKTGKKKVL 146 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 + + D +R AAIDQLK A + DF+ S+ +A A A+ DVLI+DTAG Sbjct: 147 VVSADVYRPAAIDQLKSVAAQVGVDFLPSDPSQKPEDIARNAVDHARRHHYDVLILDTAG 206 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 RL + +M + IR L D P L V+DA GQ+A+ F TG+++ Sbjct: 207 RLGIDEAMM----REIRALH--DLVKPVETLFVVDAMQGQDAVNTARAFAEALPLTGVVL 260 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TK+DG ARGG + + P+ F+GV E ++ LEPF + + + G D Sbjct: 261 TKLDGDARGGAALSVRHVTGKPLKFVGVSEKLDGLEPFYPERMAQRVLGMGD 312 >gi|254432051|ref|ZP_05045754.1| signal recognition particle protein [Cyanobium sp. PCC 7001] gi|197626504|gb|EDY39063.1| signal recognition particle protein [Cyanobium sp. PCC 7001] Length = 494 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 79/282 (28%), Positives = 144/282 (51%), Gaps = 18/282 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPLS 100 +G +++ L+ +D+ + V + V+E+ K +V V+ + D +++H+ L+ Sbjct: 28 EGALKDVRRALLEADVSLPVVKDFVDEVRRKAVGAEV-VRGISPDQKFIQVVHEQLVDTM 86 Query: 101 KPFNWDFSH-----RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 N + P V+L+ G+ G GKTT KL + + G + +L D +R AAI Sbjct: 87 GGENAPLAAGGKPGEPSVVLMAGLQGAGKTTATAKLGLHLKEQGRRALLVGADVYRPAAI 146 Query: 156 DQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 +QL+ + + +G++A +A ++A+ + D +++DTAGRL ++ +M Sbjct: 147 EQLRTLGGQIGVEVFS--LGTEARPEDIAAAGVEKAREEGFDTVLVDTAGRLQIDTSMME 204 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 +M+R+ + + P VL V+D+ GQ A FH G TG ++TK+DG +RGG Sbjct: 205 ---EMVRIREAVQPD---EVLLVVDSMIGQEAAELTRAFHEQVGITGAVLTKLDGDSRGG 258 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+G GE + L+PF + ++ I G D Sbjct: 259 AALSIRKVSGAPIKFIGTGEKVEALQPFHPERMASRILGMGD 300 >gi|300854474|ref|YP_003779458.1| putative signal recognition particle GTPase [Clostridium ljungdahlii DSM 13528] gi|300434589|gb|ADK14356.1| predicted signal recognition particle GTPase [Clostridium ljungdahlii DSM 13528] Length = 449 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 91/316 (28%), Positives = 163/316 (51%), Gaps = 40/316 (12%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F + KL+E + + +S + + D +RE ++ L+ +D+ V + ++ + K Sbjct: 3 FEGLASKLQETLKKLRGKGKLSEKDIKDAMRE-VKLALLEADVNYKVVKNFIKSVSEKCM 61 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++V Q+V+ V+E + ++ ++ S+ VI++VG+ G GKTT+ GK Sbjct: 62 GEEVLKSLTPAQQVIKIVNEELTLLMGKNESGIEYN-SNGLTVIMLVGLQGAGKTTMCGK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKI-----------WADRTSADFVCSEIGSDAA 179 L+ ++ K +LAA D +R AAI QL++ D+ +A +C Sbjct: 121 LALQLRKKNKKPLLAACDIYRPAAIKQLQVVGKEIDVPVFSMGDKVTAVDICK------G 174 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 AL Y A+ ++V+IIDTAGRL + LM G++ ++ + ++P ++ V+DA Sbjct: 175 ALEY-----AKNNNLNVVIIDTAGRLQIDEELM---GELKQIKENINPD---EIMLVVDA 223 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQ+A+ F+ +G+I+TK+DG RGG + I P+ F+G+GE +NDL+ Sbjct: 224 MTGQDAVNVASSFNEQLNISGVILTKLDGDTRGGAALSIRAMTDKPIKFVGMGEKMNDLQ 283 Query: 300 PFVAKDFSAVITGCLD 315 F ++ I G D Sbjct: 284 VFYPDRMASRILGMGD 299 >gi|84515969|ref|ZP_01003330.1| Signal recognition particle protein ffh [Loktanella vestfoldensis SKA53] gi|84510411|gb|EAQ06867.1| Signal recognition particle protein ffh [Loktanella vestfoldensis SKA53] Length = 496 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 85/274 (31%), Positives = 138/274 (50%), Gaps = 12/274 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ + VA+ V + K + V+ Q+V+ V + + ++L P Sbjct: 33 EVRTALLEADVSLPVARDFVAAVQAKATGQAVTKSITPGQQVVKIVHDELQRVLTGDEDP 92 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIW 161 + P IL+VG+ G GKTT KL+K++ + G KV++A+ DT R AA++QL I Sbjct: 93 GALKIDNPPAPILMVGLQGSGKTTTTAKLAKRLKEREGKKVLMASLDTNRPAAMEQLAIL 152 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 + D + G +A A QA DV ++DTAGRLH ++ L+A + Sbjct: 153 GMQIGVDTLPIVKGETPVQIAKRAKVQASLGGYDVYMLDTAGRLHIDAELIAQAAAV--- 209 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 D P L V+D TGQ+A+ + F G TG+++T+MDG RGG + + Sbjct: 210 ---RDVANPRETLLVVDGLTGQDAVNVAQEFDDKIGVTGVVLTRMDGDGRGGAALSMRAI 266 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G+GE ++ +E F + I G D Sbjct: 267 TGKPIRFVGLGEKMDAIETFEPSRIAGRILGMGD 300 >gi|184200705|ref|YP_001854912.1| signal recognition particle protein [Kocuria rhizophila DC2201] gi|183580935|dbj|BAG29406.1| signal recognition particle protein [Kocuria rhizophila DC2201] Length = 521 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 92/299 (30%), Positives = 145/299 (48%), Gaps = 25/299 (8%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L ++ RL D E+ L+ +D+ V V ++ + + Sbjct: 2 FNSLSDRLTATFKNLRGKGRLSEADVDATVREIRRALLEADVAVPVVREFTAIVKERALG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L ++ N + P VI++ G+ G GKTT+ GKL Sbjct: 62 AEVSEALNPGQQVVKIVNEELQNVLGGETRRINLAKTG-PTVIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---------DAAALA 182 K ++D G K +L A D R A+ QLK+ +R E G+ D +A Sbjct: 121 GKWLTDQGHKPVLVASDLQRPNAVTQLKVVGERAGVSVFAPEPGATSESDDPTGDPVKVA 180 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 + A++K DV+I+DTAGRL + LM + IR D P VL V+DA G Sbjct: 181 RDGVDFARSKLYDVVIVDTAGRLGIDQALM-NQARDIR-----DAVDPDEVLFVIDAMIG 234 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 Q+A+ + F TG++++K+DG ARGG + + P+ F GEG++D E F Sbjct: 235 QDAVNTAKAFDEGVDFTGVVLSKLDGDARGGAALSVRAVTGKPIMFASTGEGVSDFEQF 293 >gi|113869195|ref|YP_727684.1| signal recognition particle GTPase [Ralstonia eutropha H16] gi|113527971|emb|CAJ94316.1| signal recognition particle GTPase [Ralstonia eutropha H16] Length = 464 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 77/206 (37%), Positives = 114/206 (55%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +IL+ G+ G GKTT +GKL+K + + K V+ + D +R AAI QLK +++ ADF Sbjct: 108 PAIILMAGLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 167 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S+ A +A A A+ DVLI+DTAGRL + ++M I + LK Sbjct: 168 FPSQPDQKPADIARAAVDWARKHYHDVLIVDTAGRLGIDELMMQEIAALHAELK------ 221 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG ARGG + + P+ F+ Sbjct: 222 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDARGGAALSVRHITGRPIKFV 281 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE ++ LEPF + I G D Sbjct: 282 GVGEKLDGLEPFYPDRMAQRILGMGD 307 >gi|300811712|ref|ZP_07092186.1| signal recognition particle protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497288|gb|EFK32336.1| signal recognition particle protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 476 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 103/321 (32%), Positives = 160/321 (49%), Gaps = 32/321 (9%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A E+LS +L K + + K K DI ++ R E+ L+ +D+ V + Sbjct: 1 MAFENLS--ERLQKALRNLTGKGKISEEDINAASR-------EIRLALLEADVNFKVVKD 51 Query: 66 IVEELLTKRYAKDVSV-----QRVLYDVSELIHKML----MPLSKPFNWDFSHRPHVILV 116 ++ + + ++V Q+V+ V+E + KM+ + L+K H P VI++ Sbjct: 52 FIKTIKKRALGQEVQESLTPGQQVIKIVNEELTKMMGEEAVGLTKS-----PHIPTVIMM 106 Query: 117 VGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLK-IWADRTSADFVCSEI 174 VG+ G GKTT +GKL+ + M + + L AGD +R AAIDQLK I AD + E Sbjct: 107 VGLQGTGKTTTVGKLAYRLMKEEKARPFLIAGDIYRPAAIDQLKQIGADLKVPVYSDPEE 166 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 S A + + +A + D +IIDTAGRL + LM + ++ V P ++L Sbjct: 167 KS-VAKIVEDGLAEAAVHRNDYVIIDTAGRLEIDEPLMKELEEVKAV------SQPDNIL 219 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DA TGQ A + F+ TG+I+TK+DG RGG + I P+ F G GE Sbjct: 220 LVVDAMTGQAAADVAQTFNERLDVTGVILTKLDGDTRGGAALSIRAITGKPILFTGQGEK 279 Query: 295 INDLEPFVAKDFSAVITGCLD 315 + DLE F ++ I G D Sbjct: 280 LTDLEVFHPDRMASRILGMGD 300 >gi|238758266|ref|ZP_04619445.1| Signal recognition particle protein [Yersinia aldovae ATCC 35236] gi|238703596|gb|EEP96134.1| Signal recognition particle protein [Yersinia aldovae ATCC 35236] Length = 453 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 114/212 (53%), Gaps = 13/212 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT + KL K + + K V++ + D +R AAI QL+ A+ Sbjct: 97 AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAEGVG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S+ + A +QA+ K DVLI+DTAGRLH + +M I ++ Sbjct: 157 IDFFPSDAQEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQI-------- 208 Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 HA P L V+DA TGQ+A + F+ TG+++TK+DG ARGG + I Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ FLGVGE + LEPF ++ I G D Sbjct: 268 KPIKFLGVGEKSDALEPFHPDRVASRILGMGD 299 >gi|258570483|ref|XP_002544045.1| hypothetical protein UREG_03562 [Uncinocarpus reesii 1704] gi|237904315|gb|EEP78716.1| hypothetical protein UREG_03562 [Uncinocarpus reesii 1704] Length = 579 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 89/282 (31%), Positives = 144/282 (51%), Gaps = 38/282 (13%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTK------------RYAKDVSVQRVLYDVSEL- 91 +ED L++ ++ A ++ E EL+ K R A + S+Q++L S L Sbjct: 290 MEDHLLKKNVAREAAVRLCEGVEQELVGKKTGSFQSIDAALRSAMESSLQKILTPTSSLD 349 Query: 92 IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 + + + ++ P + + RP+VI +VGVNGVGK+T + K+ + KV++AA DTFR Sbjct: 350 LLREIEAVTSPHDRQQARRPYVISIVGVNGVGKSTNLSKICFFLLQNNYKVLIAACDTFR 409 Query: 152 SAAIDQLKIWA-------DRTSA---DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 S A++QL++ A +R + + G DAA +A +A A + DV++IDT Sbjct: 410 SGAVEQLRVHARNLKELSERENVGHIELYEKGYGKDAANVAKDAVAYAASSNFDVVLIDT 469 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT--- 258 AGR HN+ LM+ + K + AP + V +A G +++ Q F+ GT Sbjct: 470 AGRRHNDQRLMSSLEKFAKFA------APDKIFMVGEALVGTDSVMQARNFNQAFGTGRG 523 Query: 259 -TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G I++K D G L+ +V IP+ FLGVG+ DL Sbjct: 524 LDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 565 >gi|254485997|ref|ZP_05099202.1| signal recognition particle protein [Roseobacter sp. GAI101] gi|214042866|gb|EEB83504.1| signal recognition particle protein [Roseobacter sp. GAI101] Length = 501 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 140/269 (52%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA+ V+ + K + V+ Q+V+ V + + +L +P Sbjct: 38 LLEADVSLPVARDFVKAVQDKATGQAVTKSITPGQQVVKIVHDALIDVLRGEGEPGALKI 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P IL+VG+ G GKTT KL+K++ D G +V++A+ D R AA++QL I + Sbjct: 98 DNAPAPILMVGLQGSGKTTTTAKLAKRLKDRDGKRVLMASLDVNRPAAMEQLAILGVQIG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G + +A A QA DV ++DTAGRL + LM + + +R D Sbjct: 158 VDTLPIVKGENPVQIAKRAKTQAAMGGYDVYMLDTAGRLSIDEELMQQV-EAVR-----D 211 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+D TGQ+A++ E F+ G +G+++T+MDG RGG + + P+ Sbjct: 212 VANPRETLLVVDGLTGQDAVQTAENFNDRIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ LE F + + I G D Sbjct: 272 KFVGLGEKMDALETFEPERIAGRILGMGD 300 >gi|281206952|gb|EFA81136.1| signal recognition particle 54 kDa subunit [Polysphondylium pallidum PN500] Length = 504 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 87/280 (31%), Positives = 141/280 (50%), Gaps = 16/280 (5%) Query: 43 DGVREELEDLLIRSDIG----VAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKML 96 D + +E+ + L R+D+ + + + I E+L A ++ +R++ V ELI K+L Sbjct: 29 DTLLKEVGNALSRADVSLKLIIQMRKNIKEQLKLDAMAAGLNKRRIIKKVVFDELI-KLL 87 Query: 97 MPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 P P W + + ++I+ VG+ G GKTT + KL+ G + DTFR+ A Sbjct: 88 DPGVAP--WKPTKGKSNIIMFVGLQGAGKTTSVTKLASFYKRKGWATAMVCADTFRAGAF 145 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 DQLK A + F S+ D A+A + + +++I+DT+GR L + Sbjct: 146 DQLKHNATKAKIPFYGSDTDRDPVAVAKKGVDIFKKDGAEIIIVDTSGRHKQEEELFKEM 205 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 ++ V+K P +V+ V+D++ GQ A Q F +I+TKMDG ++GGG Sbjct: 206 KEIETVVK------PDNVIFVMDSSIGQAAFDQATAFKNSVSVGSVIITKMDGNSKGGGA 259 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I V K P+ F+G GE I DL+ F A F + + G D Sbjct: 260 ISAVAATKSPIIFIGTGEHIPDLDLFDASSFVSKLLGMGD 299 >gi|307183983|gb|EFN70554.1| Signal recognition particle 54 kDa protein [Camponotus floridanus] Length = 506 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 107/206 (51%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 RP+VI+ VG+ G GKTT KL+ K L DTFR+ A DQ+K A + F Sbjct: 100 RPNVIMFVGLQGSGKTTSCTKLAYHYLKKNWKACLVCADTFRAGAYDQIKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D A+A + + + +++I+DT+GR L +M++V + P Sbjct: 160 YGSYTEVDPVAIAQDGVDMFKKEGYEIIIVDTSGRHKQEESLFE---EMLQVANAVQPD- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DAT GQ Q + F +I+TK+DG A+GGG + V + PV F+ Sbjct: 216 --NIIFVMDATIGQACEAQAKAFKERVNVGSIIITKLDGHAKGGGALSAVAATQSPVIFV 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+DLEPF K F + + G D Sbjct: 274 GTGEHIDDLEPFKTKPFISKLLGMGD 299 >gi|323495854|ref|ZP_08100922.1| signal recognition particle protein [Vibrio sinaloensis DSM 21326] gi|323319070|gb|EGA72013.1| signal recognition particle protein [Vibrio sinaloensis DSM 21326] Length = 462 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 97/307 (31%), Positives = 152/307 (49%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D +++ L ++ L+ +D+ + V + ++ + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFIKRV--KEAA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E I + L ++ N + P VIL+ G+ G GKTT +G Sbjct: 60 VGVEVSKSLTPGQEFIKIVQTELEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KLSK + + K V++ + D +R AAI QL+ A DF S +A A Sbjct: 119 KLSKLLKEREKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSADQKPIDIANAAIDH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DVL++DTAGRL + +M I + + P L V+DA TGQ+A Sbjct: 179 AKKKFYDVLVVDTAGRLAIDEQMMGEIQDLHSAIN------PVETLFVVDAMTGQDAANT 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+I+TK+DG ARGG + + P+ FLGVGE + LEPF ++ Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|70984356|ref|XP_747692.1| signal sequence receptor alpha subunit [Aspergillus fumigatus Af293] gi|66845319|gb|EAL85654.1| signal sequence receptor alpha subunit, putative [Aspergillus fumigatus Af293] gi|159122478|gb|EDP47599.1| signal sequence receptor alpha subunit, putative [Aspergillus fumigatus A1163] Length = 649 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 91/283 (32%), Positives = 139/283 (49%), Gaps = 40/283 (14%) Query: 49 LEDLLIRSDIG----VAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101 +ED L++ ++ V + Q + EL+ K+ SV L E + K+L P S Sbjct: 360 MEDHLLKKNVAREAAVRLCQGVQRELVGKKTGNFQSVDAALRSAMESSLRKILTPTSSLD 419 Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 P + + RP+VI +VGVNGVGK+T +GK+ + +V++AA DTFR Sbjct: 420 LLREIDAVRSPTSKGQAPRPYVISIVGVNGVGKSTNLGKICYFLLQNNYRVLIAACDTFR 479 Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200 S A++QL++ A R + E G DAA +A +A + A DV++ID Sbjct: 480 SGAVEQLRVHA-RNLKELSTRENAGEVELYEKGYGKDAANVAKDAVEYGAANHFDVVLID 538 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258 TAGR HN+ LM+ + K + K P + V +A G +++ Q F+ GT Sbjct: 539 TAGRRHNDQRLMSSLEKFAKFAK------PDKIFMVGEALVGTDSVMQARNFNQAFGTGR 592 Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G I++K D G L+ +V IP+ FLGVG+ DL Sbjct: 593 NLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 635 >gi|163858644|ref|YP_001632942.1| hypothetical protein Bpet4326 [Bordetella petrii DSM 12804] gi|163262372|emb|CAP44675.1| ffh [Bordetella petrii] Length = 469 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 77/215 (35%), Positives = 112/215 (52%), Gaps = 16/215 (7%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG----------LKVMLAAGDTFRSAAIDQLKI 160 P +IL+ G+ G GKTT GKL + ++ G KV++ + D +R AAIDQLK Sbjct: 104 PAIILMAGLQGAGKTTTTGKLGRWLAQGGHTQNGRNTGKKKVLVVSADVYRPAAIDQLKT 163 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A++ DF+ S+ +A A A+ DVLI+DTAGRL + +M + IR Sbjct: 164 VAEQAGIDFLPSDPSQKPEDIARNAVDHARRHHYDVLILDTAGRLGIDEAMM----REIR 219 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 VL D P L V+DA GQ+A+ F TG+++TK+DG ARGG + + Sbjct: 220 VLH--DLVRPVETLFVVDAMQGQDAVNTARAFADALPLTGVVLTKLDGDARGGAALSVRH 277 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+GV E ++ LEPF + + G D Sbjct: 278 VTGKPLKFVGVSEKLDGLEPFHPDRMAQRVLGMGD 312 >gi|225442910|ref|XP_002264159.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 495 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 112/223 (50%), Gaps = 7/223 (3%) Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 KML P KP + V++ VG+ G GKTT K + G K L DTFR+ Sbjct: 85 KMLDP-GKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A DQLK A + F S + SD +A E ++ + + D++I+DT+GR + L Sbjct: 144 AFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEAALFE 203 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + ++ + P V+ V+D++ GQ A Q + F +I+TKMDG A+GG Sbjct: 204 EMRQVSEATR------PDLVIFVMDSSIGQAAFDQAQAFRQSVAVGAVIITKMDGHAKGG 257 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316 G + V K PV F+G GE +++ E F K F + + G D+ Sbjct: 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300 >gi|119953471|ref|YP_945680.1| signal recognition particle, subunit FFH/SRP54 [Borrelia turicatae 91E135] gi|119862242|gb|AAX18010.1| signal recognition particle, subunit FFH/SRP54 [Borrelia turicatae 91E135] Length = 449 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 86/293 (29%), Positives = 150/293 (51%), Gaps = 26/293 (8%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH- 93 +I+ + ++ + + +++ LI +D+ + V ++ + ++ + AK + V R + S+ I Sbjct: 21 VINEKNIEAAI-DTIKNALIEADVNLRVVRRFINSVVEE--AKGIKVLRNIDPKSQFIKI 77 Query: 94 ---KMLMPLS--------KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 K++ L P N + IL++G+ G GKTT KL+ ++ KV Sbjct: 78 VNDKLINFLGDKHSELVLSPVN-----KLSCILMLGLQGSGKTTTCAKLAMRLKSENRKV 132 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +L A DTFR+AA++QLKI + E SD + ++ + A+ + D +IIDT Sbjct: 133 LLVAADTFRAAAVNQLKILGMQVGVSVFSLEGESDPIKVVKKSIEYAKTELFDTVIIDTR 192 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRL +L+ I ++ +++ AP + V DA TGQ+A+ + F+ G TG+I Sbjct: 193 GRLEVEDLLLREIIEIKKIV------APTETILVADAMTGQSAVNIAKEFNDSVGITGVI 246 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TK D ARGG ++ + P+ F+GVGE DL+ F ++ I G D Sbjct: 247 FTKFDSDARGGAILSLKTICGAPIKFVGVGEKPEDLDVFYPDRVASRILGMGD 299 >gi|15827854|ref|NP_302117.1| signal recognition particle protein [Mycobacterium leprae TN] gi|221230331|ref|YP_002503747.1| signal recognition particle protein [Mycobacterium leprae Br4923] gi|3334343|sp|O33013|SRP54_MYCLE RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog gi|2251154|emb|CAB10614.1| Ffh protein [Mycobacterium leprae] gi|13093406|emb|CAC30573.1| signal recognition particle protein [Mycobacterium leprae] gi|219933438|emb|CAR71717.1| signal recognition particle protein [Mycobacterium leprae Br4923] Length = 521 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 150/311 (48%), Gaps = 23/311 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L I + RL D E+ L +D+ + V + V + + Sbjct: 2 FESLSNRLTGVIQGLRGKGRLTDADIEATTREIRLALFEADVSLPVVRAFVHRIKERARG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+++ V+E + +L ++ + + P V+++ G+ G GKTT+ GKL Sbjct: 62 TEVSAALNPAQQIVKIVNEELIGILGGETRQLAFAKTP-PTVVMLAGLQGSGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184 + ++ G +L A D R AA++QL++ +R G+ D A+A Sbjct: 121 AVRLRRQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPDSGPGDPVAVASA 180 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 +A+AK DV+I+DTAGRL + LMA G + + P VL VLDA GQ+ Sbjct: 181 GLVEARAKHFDVVIVDTAGRLGIDDELMAQAGAIREAIN------PDEVLFVLDAMIGQD 234 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ F A G TG+++TK+DG ARGG + + +P+ F GE ++D + F Sbjct: 235 AVTTAAAFGAGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFATTGEKLDDFDVFHPD 294 Query: 305 DFSAVITGCLD 315 ++ I G D Sbjct: 295 RMASRILGMGD 305 >gi|331701481|ref|YP_004398440.1| signal recognition particle protein [Lactobacillus buchneri NRRL B-30929] gi|329128824|gb|AEB73377.1| signal recognition particle protein [Lactobacillus buchneri NRRL B-30929] Length = 479 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 121/235 (51%), Gaps = 8/235 (3%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGL 140 Q+++ V E + K + + P N P +I++ G+ G GKTT GKL+ K+ ++ Sbjct: 73 QQIVKIVDEELTKTMGEEAVPLNK-AEKIPTIIMMSGLQGAGKTTTAGKLALKLKNEQNA 131 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 + +L A D +R AAIDQL+ + D +A +QA+ D +IID Sbjct: 132 RPLLIADDIYRPAAIDQLQTVGQQIDVPVFSLGTDVDPVEIAKRGVEQAKQDHNDYVIID 191 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL + LM + + D P+ +L V+DA TGQNA+ E F+ TG Sbjct: 192 TAGRLQIDEKLMDELSHI------KDAVEPNEILLVIDAMTGQNAVATAEGFNKTLDVTG 245 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +++TK+DG RGG + I + P+ F+G GE ++DL+ F ++ I G D Sbjct: 246 VVLTKLDGDTRGGAALSIRAVTQKPIKFVGQGEKMSDLDVFYPDRMASRILGMGD 300 >gi|153818942|ref|ZP_01971609.1| cell division protein FtsY [Vibrio cholerae NCTC 8457] gi|126510504|gb|EAZ73098.1| cell division protein FtsY [Vibrio cholerae NCTC 8457] Length = 120 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 54/111 (48%), Positives = 79/111 (71%) Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 ++I DTAGRL N S LM + K++RV+K++D APH ++ LDA TGQNA+ Q ++F V Sbjct: 1 MVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAKLFSDV 60 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 A TG+ +TK+DGTA+GG + I +IP+ ++GVGE I+DL PF ++F Sbjct: 61 APITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 111 >gi|303230196|ref|ZP_07316964.1| signal recognition particle protein [Veillonella atypica ACS-134-V-Col7a] gi|302515122|gb|EFL57096.1| signal recognition particle protein [Veillonella atypica ACS-134-V-Col7a] Length = 450 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 87/281 (30%), Positives = 141/281 (50%), Gaps = 30/281 (10%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML-------MPLS 100 L+ +D+ VA+ V+ + K ++V Q V+ V++ + +L M S Sbjct: 39 LLEADVNFMVAKDFVKSIKEKALGEEVFGSLNPAQTVIKIVNDELTALLGGTQSRIMISS 98 Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 KP P +I++VG+ G GKTT GKL+ + G ML A D +R AAI QL++ Sbjct: 99 KP--------PTIIMLVGLQGAGKTTTAGKLAVYLRKQGKHPMLVAADVYRPAAIKQLQV 150 Query: 161 WADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 + E G++ +A A +Q+ DV+IIDTAGRL + +LM + + Sbjct: 151 VGKQIDIPVFADETPGANPVDIARRAVEQSTHMLKDVVIIDTAGRLAIDEVLMDELSNIK 210 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 ++ PH +L V+D+ GQ+A+ + F+ G G+I+TK+DG ARGG + I Sbjct: 211 AAVR------PHEILLVVDSMIGQDAVTTAQTFNEKLGVDGVILTKLDGDARGGAALSIK 264 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEK 320 +P+ F GV E ++ + F ++ I LD G+ K Sbjct: 265 AVTGLPIKFTGVSEKMDGFDVFYPDRMASRI---LDLGDFK 302 >gi|254446931|ref|ZP_05060398.1| signal recognition particle protein [gamma proteobacterium HTCC5015] gi|198263070|gb|EDY87348.1| signal recognition particle protein [gamma proteobacterium HTCC5015] Length = 461 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 94/309 (30%), Positives = 162/309 (52%), Gaps = 25/309 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + ++ RL +D +++ L D+ L+ +D+ + V V++ + + Sbjct: 2 FDNLSGRLGQVVKNMTGQGRLTEDNIKDALRDVRMALLEADVALPV----VKDFVARVKE 57 Query: 77 KDVSVQRVLYDVS------ELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTV 127 + + V+ V+ V ++++ L+ L N + P +L+ G+ G GKTT Sbjct: 58 RAIGVE-VIESVKPGQAFIKVVNDELVTLMGEANESLDLAAKPPATVLMAGLQGAGKTTS 116 Query: 128 IGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 +GKL+K + + KVM+ + D +R AAIDQL+ A++ F S A+A A Sbjct: 117 VGKLAKHLKEREKKKVMVVSCDVYRPAAIDQLQTLAEQVDVAFFPSTTEQKPEAIAQAAL 176 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 +A+ + +DVL+IDTAGRLH ++ +M I + ++ P L V+DA TGQ+A Sbjct: 177 AEARKQFIDVLLIDTAGRLHIDADMMGEIQSLHSAVE------PTETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TG+I+TK DG ARGG + + P+ F+G+GE I L+PF Sbjct: 231 NTAKAFNDALPLTGVILTKADGDARGGAALSVRQITGKPIKFIGMGEKIQALDPFHPDRM 290 Query: 307 SAVITGCLD 315 ++ I G D Sbjct: 291 ASRILGMGD 299 >gi|323340725|ref|ZP_08080977.1| signal recognition particle protein [Lactobacillus ruminis ATCC 25644] gi|323091848|gb|EFZ34468.1| signal recognition particle protein [Lactobacillus ruminis ATCC 25644] Length = 493 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 86/279 (30%), Positives = 143/279 (51%), Gaps = 17/279 (6%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPL 99 V E+ L+ +D+ V + V+E+ + +V Q+++ V+E + K++ Sbjct: 43 VMREIRLALLEADVNFKVVKDFVKEVKNRAVGAEVLESLTPAQQIVKIVNEELIKVMGES 102 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQL 158 + N P VI++VG+ G GKTT GKL+ K+ + + ++ A D +R AA+DQL Sbjct: 103 AVSLNKS-KKIPTVIMMVGLQGAGKTTTAGKLAYKLKKEENARPLMIAADVYRPAAVDQL 161 Query: 159 KIWADRTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 K S D E+G+D + + K A+ +K D +IIDTAGRL + LM + Sbjct: 162 KTVG--KSIDVPVFELGTDVDPVEIVRQGMKLAEEQKNDYVIIDTAGRLQIDEKLMNELA 219 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + +K L P +L +D+ TGQNA+ + F+ TG+++TK+DG RGG + Sbjct: 220 R----IKEL--THPDEILLTVDSMTGQNAVEVAQGFNDTLDVTGVVLTKLDGDTRGGAAL 273 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I P+ F+G GE + L+ F + ++ I G D Sbjct: 274 SIRAVTGKPIKFIGQGEKMTALDVFYPERMASRILGMGD 312 >gi|163941583|ref|YP_001646467.1| signal recognition particle protein [Bacillus weihenstephanensis KBAB4] gi|229013028|ref|ZP_04170193.1| Signal recognition particle protein [Bacillus mycoides DSM 2048] gi|229061448|ref|ZP_04198793.1| Signal recognition particle protein [Bacillus cereus AH603] gi|229134653|ref|ZP_04263462.1| Signal recognition particle protein [Bacillus cereus BDRD-ST196] gi|229168584|ref|ZP_04296307.1| Signal recognition particle protein [Bacillus cereus AH621] gi|163863780|gb|ABY44839.1| signal recognition particle protein [Bacillus weihenstephanensis KBAB4] gi|228614990|gb|EEK72092.1| Signal recognition particle protein [Bacillus cereus AH621] gi|228648699|gb|EEL04725.1| Signal recognition particle protein [Bacillus cereus BDRD-ST196] gi|228717871|gb|EEL69519.1| Signal recognition particle protein [Bacillus cereus AH603] gi|228748282|gb|EEL98142.1| Signal recognition particle protein [Bacillus mycoides DSM 2048] Length = 449 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K ML A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ D ++IDTAGRLH + LM + K+ V K Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMGELAKVKEVAK---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+DA TGQ+A+ + FH G TG+++TK+DG RGG + I P+ Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ +E F + ++ I G D Sbjct: 273 FAGMGEKLDAIEAFHPERMASRILGMGD 300 >gi|297539516|ref|YP_003675285.1| signal recognition particle protein [Methylotenera sp. 301] gi|297258863|gb|ADI30708.1| signal recognition particle protein [Methylotenera sp. 301] Length = 454 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 89/286 (31%), Positives = 145/286 (50%), Gaps = 15/286 (5%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD---VSELI 92 ++ + D +RE + L+ +D+ + V ++ + ++ K+ A+ V + L V +++ Sbjct: 22 LTEENISDAMRE-VRMALLEADVALPVVKEFIAQV--KQRAQGQEVLQSLTPGQAVIQVV 78 Query: 93 HKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 H L L N + P +IL+ G+ G GKTT KL+K + + KV+LA+ D Sbjct: 79 HDELTELMGKANVGLNLAAVAPAIILMAGLQGSGKTTTSAKLAKLLKEQKKKVLLASADV 138 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI+QLK A + D S +A A A+ DV+I DTAGRL + Sbjct: 139 YRPAAIEQLKTLAKQLDVDCFDSNATQKPLDIAAAALDFAKRGYYDVIIFDTAGRLGIDE 198 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 +MA I + +L P L V+DA GQ+A+ + F TG+I+TK+DG Sbjct: 199 AMMAEIKALHTLLN------PIETLFVVDAMQGQDAVNTAKAFGDTLPLTGVILTKLDGD 252 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +RGG + + P+ F+GV E ++ LEPF + ++ I G D Sbjct: 253 SRGGAALSVRHITGKPIKFVGVSEKVDGLEPFHPERMASRILGMGD 298 >gi|87122825|ref|ZP_01078696.1| signal recognition particle protein [Marinomonas sp. MED121] gi|86161877|gb|EAQ63171.1| signal recognition particle protein [Marinomonas sp. MED121] Length = 422 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 87/269 (32%), Positives = 133/269 (49%), Gaps = 13/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + V + ++ + + +VS Q L V + + K++ + N Sbjct: 3 LLEADVALPVVKAFIDSVKERAVGTEVSKSLSPGQVFLKIVKQELEKVMGEANDELNLK- 61 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166 + P VIL+ G+ G GKTT KL++ + + K V + + D +R AAI QL+ A+ Sbjct: 62 AKPPAVILLAGLQGAGKTTSAAKLARYLKERHKKSVAVVSADVYRPAAIKQLQTLANEIG 121 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF+ SE +A A A+ DVLI+DTAGRL + +MA I + + Sbjct: 122 VDFIESEASQKPIDIANNAIDVARKSHKDVLILDTAGRLAIDDDMMAEIKALHTAID--- 178 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA TGQ+A + F V TG+++TK DG ARGG + + P+ Sbjct: 179 ---PVETLFVVDAMTGQDAANTAKAFGDVLPLTGVVLTKTDGDARGGAALSVRHITGKPI 235 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 FLGVGE LEPF ++ I G D Sbjct: 236 KFLGVGEKTEALEPFHPDRLASRILGMGD 264 >gi|303231613|ref|ZP_07318337.1| signal recognition particle protein [Veillonella atypica ACS-049-V-Sch6] gi|302513730|gb|EFL55748.1| signal recognition particle protein [Veillonella atypica ACS-049-V-Sch6] Length = 450 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 87/281 (30%), Positives = 141/281 (50%), Gaps = 30/281 (10%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML-------MPLS 100 L+ +D+ VA+ V+ + K ++V Q V+ V++ + +L M S Sbjct: 39 LLEADVNFMVAKDFVKSIKEKALGEEVFGSLNPAQTVIKIVNDELTALLGGTQSRIMISS 98 Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 KP P +I++VG+ G GKTT GKL+ + G ML A D +R AAI QL++ Sbjct: 99 KP--------PTIIMLVGLQGAGKTTTAGKLAVYLRKQGKHPMLVAADVYRPAAIKQLQV 150 Query: 161 WADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 + E G++ +A A +Q+ DV+IIDTAGRL + +LM + + Sbjct: 151 VGKQIDIPVFADETPGANPVDIARRAVEQSTHMLKDVVIIDTAGRLAIDEVLMDELSNIK 210 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 ++ PH +L V+D+ GQ+A+ + F+ G G+I+TK+DG ARGG + I Sbjct: 211 AAVR------PHEILLVVDSMIGQDAVTTAQTFNEKLGVDGVILTKLDGDARGGAALSIK 264 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEK 320 +P+ F GV E ++ + F ++ I LD G+ K Sbjct: 265 AVTGLPIKFTGVSEKMDGFDVFYPDRMASRI---LDLGDFK 302 >gi|330507723|ref|YP_004384151.1| signal sequence recognition 54 kDa protein [Methanosaeta concilii GP-6] gi|328928531|gb|AEB68333.1| Signal sequence recognition 54 kDa protein [Methanosaeta concilii GP-6] Length = 445 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 94/296 (31%), Positives = 146/296 (49%), Gaps = 20/296 (6%) Query: 28 LKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRY-AKDVSVQ 82 L+ + I S+ ++D D E++ L+++D+ V + ++ + ++ K Sbjct: 10 LRNALKKIASANKIDKALVDEAVREIQRALLQADVNVKLVMQLSNTIKSRALDEKPAPGM 69 Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 V ++++ L+ L D + I++VG+ G GKTT KL+ GL+ Sbjct: 70 NPREHVINIVYQELINLVGR-GADIPLKKQNIMLVGLQGSGKTTTAAKLATFFQRKGLRT 128 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 + DTFR+ A DQLK ++ F + +DA A+A + KK D+ I+DTA Sbjct: 129 AVICADTFRAGAYDQLKALCEKQGIFFYGEKGNTDAPAVARNGLEAT--KKYDIRIVDTA 186 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 GR H A G +I+ +K D HA L V+DA GQ A Q + F+ T Sbjct: 187 GR-H------ALEGDLIQEMK--DIHAVVNADQKLLVMDAALGQQASEQAKAFNEAVNIT 237 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G+I+TK+DGTA+GGG + V K V F+GVGE DLE F A F + + G D Sbjct: 238 GVIITKLDGTAKGGGALSAVAETKTSVAFIGVGETPADLERFEADRFISRMLGMGD 293 >gi|295099000|emb|CBK88089.1| signal recognition particle subunit FFH/SRP54 (srp54) [Eubacterium cylindroides T2-87] Length = 471 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 91/293 (31%), Positives = 150/293 (51%), Gaps = 21/293 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + I +I +L + + E L+++ L+ +D+ V ++ VE + K Sbjct: 3 FESLSERLNKAIKNISGQGKLTEKNMNEMLKEVRLSLLEADVNYNVVKEFVENVKEKALG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V Q V+ V + I +L N+ +++VG+ G GKTT K+ Sbjct: 63 QEVMDSLNPGQMVVKIVRDEIQTLLGEEDAKINFK-KQGITTLMMVGLQGTGKTTASAKI 121 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL--AYEAFKQ 188 ++ +V+L A D R AAI+QL+ S D +G+ A+ A +A + Sbjct: 122 ARYCKQKLAKRVLLVACDVVRPAAIEQLQTLG--KSIDIEVFTLGAQTPAVETARQAMRY 179 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A ++ D++I DTAGRLH + LM + +M ++K P +L +DA TGQ+ + Sbjct: 180 AADRQKDLVIFDTAGRLHIDDELMNELSEMKELVK------PDDILLTVDAMTGQDIVTV 233 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F+ TGL++TKMDG ARGGGL+ + +PV F+ GE + DLE F Sbjct: 234 AKEFNERLSITGLVVTKMDGDARGGGLLSVRSITNVPVLFVSSGEKVEDLEEF 286 >gi|58584310|ref|YP_197883.1| Signal recognition particle GTPase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418626|gb|AAW70641.1| Signal recognition particle GTPase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 447 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 92/293 (31%), Positives = 153/293 (52%), Gaps = 13/293 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + LT+ S KLK IIS + +RE + LI +D+ + VA+K + ++ Sbjct: 1 MFKSLTESLNSVFNKLKG--KSIISEDDFNLAIRE-IRIALIEADVSLEVAKKFINDIKD 57 Query: 73 K----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 K + K VS +++ V + ++ L K ++ P VI++VG+ G GKTT Sbjct: 58 KVIGEKVIKSVSPAQMIIKVVQDNLITILGLEKSDLNLGANPPAVIMMVGLQGAGKTTTS 117 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ K+ KVMLA+ D +R AA QL++ + + + A+ A Sbjct: 118 GKLALKLKKQKKKVMLASLDIYRPAAQKQLEVLGKQIDIQTLSTVTDEKPTAITKRALAA 177 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ DVLI+DTAGRLH + +M ++ +K++ +P V+ V DA GQ+A+ Sbjct: 178 AKNDNYDVLILDTAGRLHIDDNMM----NELKTVKKI--ASPAEVILVADAMIGQDAVNI 231 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F+ G TG+I+T++DG ARGG + + + P+ F+ GE ++DL+ F Sbjct: 232 AKSFNETIGVTGIILTRVDGDARGGAALSMKMVTNCPIKFIACGEKLSDLDDF 284 >gi|88809131|ref|ZP_01124640.1| signal recognition particle protein (SRP54) [Synechococcus sp. WH 7805] gi|88787073|gb|EAR18231.1| signal recognition particle protein (SRP54) [Synechococcus sp. WH 7805] Length = 489 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 86/280 (30%), Positives = 143/280 (51%), Gaps = 16/280 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPLS 100 +G +++ L+ +D+ + V + V ++ K DV V+ V D +++H+ L+ + Sbjct: 28 EGALKDVRRALLEADVSLPVVKDFVADVREKAVGSDV-VRGVSPDQKFIQVVHEQLVEVM 86 Query: 101 KPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 N + P V+L+ G+ G GKTT KL + D G + ++ D +R AAI+Q Sbjct: 87 GGGNAPLAQAEEAPTVVLMAGLQGAGKTTATAKLGLHLKDQGRRALMVGADVYRPAAIEQ 146 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK--VDVLIIDTAGRLHNNSILMAGI 215 LK + + +G+DA A A A+AK+ D L++DTAGRL ++ +M Sbjct: 147 LKTLGGQIGVEVFS--LGADAKPEAIAAAGLAKAKEEGFDTLLVDTAGRLQIDTEMME-- 202 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 +M+R+ + P VL V+D+ GQ A FH G TG ++TK+DG +RGG Sbjct: 203 -EMVRIRTAVQ---PDEVLLVVDSMIGQEAAELTRAFHEQVGITGAVLTKLDGDSRGGAA 258 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+G GE + L+PF + ++ I G D Sbjct: 259 LSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRILGMGD 298 >gi|91774877|ref|YP_544633.1| signal recognition particle subunit FFH/SRP54 (srp54) [Methylobacillus flagellatus KT] gi|91708864|gb|ABE48792.1| signal recognition particle subunit FFH/SRP54 (srp54) [Methylobacillus flagellatus KT] Length = 450 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 90/313 (28%), Positives = 153/313 (48%), Gaps = 25/313 (7%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 S L + K +G A + +E ITD + R+ L+ +D+ + V + V Sbjct: 6 SNRLQQVVKTLRGHARLT---EENITDAMREVRM----------ALLEADVALPVVKDFV 52 Query: 68 EELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 ++ + ++V Q V+ V E + +++ + N ++ P ++L+ G+ G Sbjct: 53 SQVKERAVGREVLQSLSPGQAVIQVVHEELTRLMGEQNVGLNL-ATNPPAIVLMAGLQGS 111 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT KL++ + KV+LA+ D +R AAI+QLK A D S A +A Sbjct: 112 GKTTTSAKLARLLKADKKKVLLASADVYRPAAIEQLKTLAKSLEVDCFDSNATQKPADIA 171 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 +A A+ DVLI DTAGRL + +MA I ++ +L +P L V+DA G Sbjct: 172 AQALDFAKRHFYDVLIFDTAGRLGIDEAMMAEIKQLHEIL------SPIETLFVVDAMQG 225 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 Q+A+ F TG+++TK+DG ARGG + + P+ ++GV E ++ +E F Sbjct: 226 QDAVNTARAFGETLPLTGVVLTKLDGDARGGAALSVRHVTGKPIKYIGVSEKVDGIELFH 285 Query: 303 AKDFSAVITGCLD 315 + ++ + G D Sbjct: 286 PERMASRVLGMGD 298 >gi|110678638|ref|YP_681645.1| signal recognition particle protein, putative [Roseobacter denitrificans OCh 114] gi|109454754|gb|ABG30959.1| signal recognition particle protein, putative [Roseobacter denitrificans OCh 114] Length = 505 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 83/269 (30%), Positives = 139/269 (51%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA+ V+ + K + V+ Q+V+ V + + +L +P Sbjct: 38 LLEADVSLPVARDFVKAVQEKATGQAVTKSITPGQQVVKIVHDALIDVLKGEGEPGTLKV 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P +L+VG+ G GKTT KL+K++ + G +V++A+ D R AA++QL I + Sbjct: 98 DNPPASVLMVGLQGSGKTTTTAKLAKRLKEKDGKRVLMASLDVNRPAAMEQLAILGAQIG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G D A+A A QA DV ++DTAGRL + LM + + +R D Sbjct: 158 VDTLPIIAGQDPVAIAKRAKTQAGLGGYDVYMLDTAGRLSIDEELMQQV-EAVR-----D 211 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 +P L V+D TGQ+A+ + F G +G+++T+MDG RGG + + P+ Sbjct: 212 VASPRETLLVVDGLTGQDAVHTAQNFDERIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ LE F + I G D Sbjct: 272 KFVGLGEKMDALETFEPDRVAGRILGMGD 300 >gi|159027605|emb|CAO86977.1| ffh [Microcystis aeruginosa PCC 7806] Length = 478 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 85/288 (29%), Positives = 145/288 (50%), Gaps = 25/288 (8%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85 D ISS + + ++E + L+ +D+ + V + + E+ + +V +++ Sbjct: 20 DKISSANIQETLKE-VRRALLEADVNLQVVKGFIAEVEKQALGAEVISGVNPGQQFIKIV 78 Query: 86 YD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 YD + +++ + +PL++ P VIL+ G+ G GKTT KL+ + ++ Sbjct: 79 YDELVKIMGESNVPLAQA-----DKPPTVILMAGLQGTGKTTATAKLALYLRKQSKSCLM 133 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTA 202 A D +R AAIDQL + + E+GS A +A + ++A+ VD +IIDTA Sbjct: 134 VATDVYRPAAIDQLITLGQQINVPVF--EMGSQANPVDIARQGVEKAKELGVDTVIIDTA 191 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRL ++ +M + ++ +++ P L V+DA TGQ A FH G TG I Sbjct: 192 GRLQIDTQMMGELAQIKKIVN------PDDTLLVVDAMTGQEAASLTNTFHQQIGITGAI 245 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +TK+DG RGG + + P+ F+GVGE + LEPF ++ I Sbjct: 246 LTKLDGDTRGGAALSVRQISGQPIKFVGVGEKVEALEPFYPDRLASRI 293 >gi|325294068|ref|YP_004279932.1| signal recognition particle protein [Agrobacterium sp. H13-3] gi|325061921|gb|ADY65612.1| signal recognition particle protein [Agrobacterium sp. H13-3] Length = 523 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 116/206 (56%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GK++K+++D K V++A+ DT R AA +QL+ +T D Sbjct: 100 PVVIMMVGLQGSGKTTTTGKIAKRLTDRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ DV+I+DTAGR H + LM +M + K+ +PH Sbjct: 160 LPVIAGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLML---EMADIKKKSNPH- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +L V D+ TGQ+A+ F G TGL++T+MDG RGG + + P+ + Sbjct: 216 --EILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+GE +N+L+ F + + I G D Sbjct: 274 GIGERMNELDEFHPRRIADRILGMGD 299 >gi|301120250|ref|XP_002907852.1| signal recognition particle, putative [Phytophthora infestans T30-4] gi|262102883|gb|EEY60935.1| signal recognition particle, putative [Phytophthora infestans T30-4] Length = 511 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 81/274 (29%), Positives = 135/274 (49%), Gaps = 12/274 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS--VQR---VLYDVSELIHKMLMPLSK 101 +E+ L+ SD+ V + +++ + + +D S V R + V + I +ML P ++ Sbjct: 33 KEICGALLESDVQVKLVRQLRDNVKLAVNLEDASSGVNRRRLIQKSVVDQIVQMLEPEAQ 92 Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 P+ + +VI+ VG+ G GKTT I K + G K + DTFR+ A DQLK Sbjct: 93 PYKMK-KGQSNVIMFVGLQGSGKTTSIAKFAHFYQRKGWKTCMVCADTFRAGAFDQLKQN 151 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 + + F S +D +A E Q +A+ +++++DT+GR + L A + ++ Sbjct: 152 STKLRIPFYGSYTEADPVRIAEEGVAQFRAENYELILVDTSGRHKQETDLFAEMREVSAA 211 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 ++ P V+ V+D+T GQ Q F +I+TK+DG A+GGG + V Sbjct: 212 VQ------PDDVVFVMDSTIGQAVFDQASAFRETVDVGSVIITKLDGHAKGGGALSAVAA 265 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F G GE D E F A+ F + + G D Sbjct: 266 TGSPIIFYGTGEHFADFESFNAQSFVSRLMGMGD 299 >gi|260437024|ref|ZP_05790840.1| signal recognition particle protein [Butyrivibrio crossotus DSM 2876] gi|292810333|gb|EFF69538.1| signal recognition particle protein [Butyrivibrio crossotus DSM 2876] Length = 448 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 85/304 (27%), Positives = 150/304 (49%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRLD-DGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ + RL D V+ ++++ L+ +D+ V ++ V + + Sbjct: 3 FDSLSEKLQNIFKKLRGKGRLSADDVKTAMKEVKMALLEADVNFKVVKQFVNTVSERAVG 62 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + ++ + ++ P VI++ G+ G GKTT K+ Sbjct: 63 QDVMSSLTPGQMVIKIVNEEMVALMGSETTEISFVPGAAPTVIMMAGLQGAGKTTTTAKI 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K+ + G + +L A D +R AAI QL+I ++ + +A A AQ Sbjct: 123 AGKLKEKGKRPLLVACDVYRPAAIKQLQINGEKQGVPVFEMGDNNKPVDIAKAALAHAQK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +V+I+DTAGRLH + +M + ++ + H + V+DA TGQ+A+ Sbjct: 183 NNNNVVILDTAGRLHVDEDMMNELKEIKEAVN------VHQTILVVDAMTGQDAVNVAST 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G G+++TK+DG RGG + I P+ ++G+GE ++DLE F ++ I Sbjct: 237 FNEQIGIDGVVLTKLDGDTRGGAALSIKAVTGKPILYIGMGEKLSDLEQFYPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|198275694|ref|ZP_03208225.1| hypothetical protein BACPLE_01869 [Bacteroides plebeius DSM 17135] gi|198271323|gb|EDY95593.1| hypothetical protein BACPLE_01869 [Bacteroides plebeius DSM 17135] Length = 443 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 86/266 (32%), Positives = 141/266 (53%), Gaps = 15/266 (5%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99 V E L+D+ L+ +D+ VA+ + + K ++V + + + +++H L L Sbjct: 26 NVAETLKDVRRALLDADVNYKVAKNFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTTL 85 Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156 + RP VIL+ G+ G GKTT GKL++ M S K +L A D +R AAI+ Sbjct: 86 MGGDTAEIELKGRPAVILMSGLQGSGKTTFSGKLARMMKSKKNRKPLLVACDVYRPAAIE 145 Query: 157 QLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 QLK+ + V SE+ S D +A A ++A+AK D++I+DTAGRL + +M I Sbjct: 146 QLKVLGQQIEVP-VYSELDSKDPVQIALNAIQEAKAKGYDLVIVDTAGRLAIDEQMMNEI 204 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 + + + P + L V+DA TGQ+A+ F+ TG+++TK+DG RGG Sbjct: 205 EAIKKAIN------PDATLFVVDAMTGQDAVNTAREFNERLDFTGVVLTKLDGDTRGGAA 258 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPF 301 + I P+ F+G GE ++ ++ F Sbjct: 259 LSIRTVVNKPIMFVGTGEKLDAVDQF 284 >gi|110763770|ref|XP_624497.2| PREDICTED: signal recognition particle 54 kDa protein-like [Apis mellifera] Length = 498 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 RP++I+ VG+ G GKTT KL+ K L DTFR+ A DQ+K A + F Sbjct: 100 RPNIIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQIKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A + + + + +++I+DT+GR L +M++V + P Sbjct: 160 YGSYTEVDPVTIAQDGVEMFKKEGYEIIIVDTSGRHKQEESLFE---EMLQVANAIQPD- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DAT GQ Q + F +I+TK+DG A+GGG + V + PV F+ Sbjct: 216 --NIIFVMDATIGQACEAQAKAFKERVNVGSIIITKLDGHAKGGGALSAVAATQSPVIFV 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+DLEPF K F + + G D Sbjct: 274 GTGEHIDDLEPFKTKPFISKLLGMGD 299 >gi|217969599|ref|YP_002354833.1| signal recognition particle protein [Thauera sp. MZ1T] gi|217506926|gb|ACK53937.1| signal recognition particle protein [Thauera sp. MZ1T] Length = 456 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 112/209 (53%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT GKL+K + + KV++ + D +R AAI+QLK A + Sbjct: 97 TQPPAVVLMAGLQGAGKTTTTGKLAKLLHEQHKKKVLVVSTDVYRPAAIEQLKTVAAQAG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 F SE +A A A+ +DVL++DTAGRL + +MA I + +K Sbjct: 157 VGFFPSETAQKPVDIALAALDYARKHHMDVLLVDTAGRLAVDEAMMAEIQVLHAAVK--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA GQ+A+ F+ TG+++TK+DG +RGG + + P+ Sbjct: 214 ---PIETLFVVDAMLGQDAVNTARAFNEALPLTGIVLTKLDGDSRGGAALSVRHVTGKPL 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F GVGE ++ LEPF ++ I G D Sbjct: 271 KFAGVGEKLSGLEPFHPDRMASRILGMGD 299 >gi|156407984|ref|XP_001641637.1| predicted protein [Nematostella vectensis] gi|156228776|gb|EDO49574.1| predicted protein [Nematostella vectensis] Length = 498 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 81/269 (30%), Positives = 138/269 (51%), Gaps = 14/269 (5%) Query: 53 LIRSDIGVAVAQKIVEELLT----KRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDF 107 L+ SD+ V + +++ E + + A ++ ++++ + V + + K++ P K W Sbjct: 39 LLESDVNVQLVKRLRENVKAAIDFEEMAAGLNKRKMIQHTVFQELCKLVDPGVKA--WTP 96 Query: 108 SH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 S + +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + Sbjct: 97 SKGKKNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKAR 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 F S +D +A E ++ + + +++I+DT+GR L +M++V + Sbjct: 157 IPFYGSYTETDPVIIAQEGVEKFKEENFEIIIVDTSGRHKQEESLFE---EMLQVSNAV- 212 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 +P +++ V+DAT GQ Q F +I+TK+DG A+GGG + V K P+ Sbjct: 213 --SPDNIIFVMDATIGQACESQSRAFKEKVDVASVIVTKLDGHAKGGGALSAVAATKSPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G GE I+D E F + F + + G D Sbjct: 271 IFIGTGEHIDDFEQFKTRPFISKLLGMGD 299 >gi|187476962|ref|YP_784986.1| signal recognition particle protein [Bordetella avium 197N] gi|115421548|emb|CAJ48057.1| signal recognition particle protein [Bordetella avium 197N] Length = 470 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 88/284 (30%), Positives = 141/284 (49%), Gaps = 30/284 (10%) Query: 53 LIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK----PFN 104 L+ +D+ + V + V E+ L + A ++ + L L+HK L L P + Sbjct: 38 LLEADVALPVVRDFVARVKEKALGEEVASSLTPGQTLVG---LVHKELTSLMGGDLGPGS 94 Query: 105 WDFS---HRPHVILVVGVNGVGKTTVIGKLSKKMSDA----------GLKVMLAAGDTFR 151 + S P VIL+ G+ G GKTT GKL++ +S+ KV++ + D +R Sbjct: 95 GELSLAVQPPAVILMAGLQGAGKTTTTGKLARWLSEGEHIQNGRKSGKKKVLVVSADVYR 154 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 AAI+QLK A + DF+ S+ +A A + A+ DVLI+DTAGRL + + Sbjct: 155 PAAIEQLKTVAAQVGVDFLPSDPSQKPEDIARNAVEHARRHHYDVLIVDTAGRLGIDEAM 214 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M I + ++K P L V+DA GQ+A+ F TG+++TK+DG AR Sbjct: 215 MREIAALHALVK------PVETLFVVDAMQGQDAVNTARAFAEALPLTGVVLTKLDGDAR 268 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 GG + + P+ F+GV E ++ L+PF + + + G D Sbjct: 269 GGAALSVRHITGKPLKFVGVSEKLDGLQPFHPERMAQRVLGMGD 312 >gi|294139726|ref|YP_003555704.1| signal recognition particle protein Ffh [Shewanella violacea DSS12] gi|293326195|dbj|BAJ00926.1| signal recognition particle protein Ffh [Shewanella violacea DSS12] Length = 457 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 98/310 (31%), Positives = 152/310 (49%), Gaps = 27/310 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIV----EELLT 72 F + + +L + +I RL +D V+E L ++ L+ +D+ + V + V E + Sbjct: 2 FENLTDRLSRTLKNISGRGRLTEDNVKETLREVRMALLEADVALPVVRAFVNNVKERAVG 61 Query: 73 KRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIG 129 + +K +S + + SEL + M D S P VI+V G+ G GKTT + Sbjct: 62 QEVSKSLSPGQAFIKIVQSELENAMG---EANEGLDLSALPPAVIMVAGLQGAGKTTSVA 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL K + + K V++ + D +R AAI QL+ A F S++ + A Sbjct: 119 KLGKFLREREKKSVLVVSADVYRPAAIKQLETLATEVDVQFFPSDVSQKPIDIVNAALAH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNA 245 A+ K +DV+I+DTAGRLH + +M I + HA P L V+DA TGQ+A Sbjct: 179 AKLKFIDVVIVDTAGRLHVDESMMDEIKAL---------HAAVNPVETLFVVDAMTGQDA 229 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + F+ TG+++TK+DG ARGG + I P+ FLGVGE + LE F Sbjct: 230 AITAKAFNEALPLTGIVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEAFHPDR 289 Query: 306 FSAVITGCLD 315 ++ I G D Sbjct: 290 IASRILGMGD 299 >gi|237712935|ref|ZP_04543416.1| conserved hypothetical protein [Bacteroides sp. D1] gi|260173557|ref|ZP_05759969.1| putative signal recognition protein [Bacteroides sp. D2] gi|262409622|ref|ZP_06086162.1| signal recognition particle protein [Bacteroides sp. 2_1_22] gi|294643466|ref|ZP_06721279.1| signal recognition particle protein [Bacteroides ovatus SD CC 2a] gi|294807908|ref|ZP_06766689.1| signal recognition particle protein [Bacteroides xylanisolvens SD CC 1b] gi|298484340|ref|ZP_07002501.1| signal recognition particle protein [Bacteroides sp. D22] gi|315921825|ref|ZP_07918065.1| conserved hypothetical protein [Bacteroides sp. D2] gi|229447054|gb|EEO52845.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262352475|gb|EEZ01575.1| signal recognition particle protein [Bacteroides sp. 2_1_22] gi|292641185|gb|EFF59390.1| signal recognition particle protein [Bacteroides ovatus SD CC 2a] gi|294444906|gb|EFG13592.1| signal recognition particle protein [Bacteroides xylanisolvens SD CC 1b] gi|295087957|emb|CBK69480.1| signal recognition particle subunit FFH/SRP54 (srp54) [Bacteroides xylanisolvens XB1A] gi|298269494|gb|EFI11094.1| signal recognition particle protein [Bacteroides sp. D22] gi|313695700|gb|EFS32535.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 440 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 78/265 (29%), Positives = 139/265 (52%), Gaps = 13/265 (4%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99 V E L+D+ L+ +D+ VA+ + + K ++V + + + +++H L L Sbjct: 26 NVAETLKDVRKALLDADVNYKVAKNFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQL 85 Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156 + + RP VIL+ G+ G GKTT GKL++ + + K +L A D +R AAI+ Sbjct: 86 MGGETAEINIDARPAVILMSGLQGSGKTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIE 145 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL++ A++ C + +A A ++A+AK D++I+DTAGRL + +M I Sbjct: 146 QLRVLAEQIEVPMYCELDSKNPVEIAQHAIQEAKAKGYDLVIVDTAGRLAVDEQMMNEIA 205 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + + P+ +L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + Sbjct: 206 AIKEAIN------PNEILFVVDSMTGQDAVNTAKEFNERLDFNGVVLTKLDGDTRGGAAL 259 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301 I P+ F+G GE + ++ F Sbjct: 260 SIRSVVNKPIKFVGTGEKLEAIDQF 284 >gi|291276573|ref|YP_003516345.1| signal recognition particle protein [Helicobacter mustelae 12198] gi|290963767|emb|CBG39602.1| signal recognition particle protein [Helicobacter mustelae 12198] Length = 445 Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 78/270 (28%), Positives = 140/270 (51%), Gaps = 8/270 (2%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 +EL+ L+++D+ V ++I++++ +K A + Q L + E I +L SK + + Sbjct: 30 DELKKALLKNDVHHKVTKEIIQQVQSKTKALGIGKQNFLDSLQEAILSILQS-SKNYGFV 88 Query: 107 FSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 F+ +P +IL+ G+ G GKTT KL+ + KV+LAA D R AA+ QL+ ++ Sbjct: 89 FASKPPTIILMTGLQGSGKTTTSAKLANYLKTKNKKVLLAACDLQRLAAVKQLQSLGEKI 148 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + +A A ++A + DVLIIDTAGRL + LM + + + Sbjct: 149 EVEVFHVQDAKSPIEVAKRAKEKAMGHQYDVLIIDTAGRLAIDDTLMQELTDIKAAIN-- 206 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P + V D+ +GQ+ +R ++F+ +G+I++K D ++GG + I +P Sbjct: 207 ----PDEIFYVADSLSGQDGVRTADLFNQKLDVSGVILSKFDSDSKGGIALSIAYQIGLP 262 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F+G GE I D + F+ + + G D Sbjct: 263 LRFIGTGEKIPDFDIFLPDRIVSRLMGAGD 292 >gi|329894268|ref|ZP_08270154.1| Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) [gamma proteobacterium IMCC3088] gi|328923199|gb|EGG30521.1| Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) [gamma proteobacterium IMCC3088] Length = 454 Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 91/308 (29%), Positives = 148/308 (48%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + I +L + G E+ L+ +D+ + V + E + + Sbjct: 2 FQSLSDRLSATLKSISGKAKLSEDNIQGTLREVRMALLEADVALPVVKTFTEAVKQRALG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V+ Q L V + + ++ N + P +IL+ G+ G GKTT + KL Sbjct: 62 QEVAQALSPGQAFLKIVQSELESTMGSANESLNL-ATQPPAIILMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 ++++ + K V + + D +R AAI QL+ A A F+ S++ +A A + A+ Sbjct: 121 ARRLIEREKKSVSVVSADVYRPAAIKQLETLAQEVGARFIPSDMNESPVEIAKRAVQTAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 + DVL++DTAGRL ++ +MA I D HA P L V+DA TGQ+A Sbjct: 181 TQFSDVLLVDTAGRLAIDAEMMAEIK---------DLHAAIDPIETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F TG+I+TK+D RGG + + P+ FLGVGE L+PF + Sbjct: 232 TAKAFGDALPLTGVILTKVDADVRGGAALSVRSITGKPIKFLGVGEKTQALDPFHPDRIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|319425569|gb|ADV53643.1| signal recognition particle protein [Shewanella putrefaciens 200] Length = 457 Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 155/305 (50%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL ++ V+E L ++ L+ +D+ + V ++ V + + Sbjct: 2 FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++VS Q + V + K + ++ + + P V+++ G+ G GKTT + KL Sbjct: 62 QEVSKSLSPGQAFIKIVQSELEKSMGEANEALDL-ATQPPAVLMMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + K V++ + D +R AAI QL+ A +F S++ +A A A+ Sbjct: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLAAEVDVEFFPSDVSQKPIDIAKAAIAHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K +DV+IIDTAGRLH + +M I + +K P L V+DA TGQ+A + Sbjct: 181 LKFIDVVIIDTAGRLHVDEAMMDEIKGLHAAVK------PIETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|50365296|ref|YP_053721.1| signal recognition particle (signal binding protein) [Mesoplasma florum L1] gi|50363852|gb|AAT75837.1| signal recognition particle (signal binding protein) [Mesoplasma florum L1] Length = 450 Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 89/291 (30%), Positives = 148/291 (50%), Gaps = 18/291 (6%) Query: 34 DIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTK---RYAKD--VSVQRVL 85 +I S D+ ++E L ++ L+ +D+ V V ++++ ++ K Y ++ S Q++L Sbjct: 18 NIKKSTLTDENIQETLREIRLALLEADVNVEVVKELISKIKEKTVGEYIQEGVTSHQQML 77 Query: 86 YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 V E + +L P N S +P V+++VG+ G GKTT KL+ ++ K L Sbjct: 78 KIVHEELIDILGTEKAPLN--LSKKPSVVMMVGLQGSGKTTSSSKLAHYLAKKEAKKPLL 135 Query: 146 AG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 G D +R AIDQL ++ + V + A +A + A+ DV+I+DTAGR Sbjct: 136 VGLDIYRPGAIDQLVELGNKNNIP-VFEQGKQSPLKTAKQALEFAEKNGHDVVILDTAGR 194 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 L + LM + + ++ +P+ L V+D GQ + F+ TG+I+T Sbjct: 195 LQIDKDLMNELNDLRKI------TSPNETLLVVDGMIGQEIINVTNEFNNQLKLTGVIVT 248 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 K+DG ARGG + I K+P+ F+G GEG++ L PF K + I G D Sbjct: 249 KLDGDARGGATLSIRYMTKLPIKFIGEGEGVSALAPFYPKRMADRILGMGD 299 >gi|160886334|ref|ZP_02067337.1| hypothetical protein BACOVA_04343 [Bacteroides ovatus ATCC 8483] gi|299146818|ref|ZP_07039886.1| signal recognition particle protein [Bacteroides sp. 3_1_23] gi|156108219|gb|EDO09964.1| hypothetical protein BACOVA_04343 [Bacteroides ovatus ATCC 8483] gi|298517309|gb|EFI41190.1| signal recognition particle protein [Bacteroides sp. 3_1_23] Length = 440 Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 78/265 (29%), Positives = 139/265 (52%), Gaps = 13/265 (4%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99 V E L+D+ L+ +D+ VA+ + + K ++V + + + +++H L L Sbjct: 26 NVAETLKDVRKALLDADVNYKVAKNFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQL 85 Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156 + + RP VIL+ G+ G GKTT GKL++ + + K +L A D +R AAI+ Sbjct: 86 MGGETAEINIDARPAVILMSGLQGSGKTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIE 145 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL++ A++ C + +A A ++A+AK D++I+DTAGRL + +M I Sbjct: 146 QLRVLAEQIEVPMYCELDSKNPVEIAQHAIQEAKAKGYDLVIVDTAGRLAVDEQMMNEIA 205 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + + + P +L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + Sbjct: 206 AIKKAIN------PDEILFVVDSMTGQDAVNTAKEFNERLDFNGVVLTKLDGDTRGGAAL 259 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301 I P+ F+G GE + ++ F Sbjct: 260 SIRSVVNKPIKFVGTGEKLEAIDQF 284 >gi|154277597|ref|XP_001539638.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150413223|gb|EDN08606.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 651 Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 92/278 (33%), Positives = 138/278 (49%), Gaps = 37/278 (13%) Query: 40 RLDDGVREELEDLLIRSDIGVAVA--QKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKML 96 RL DGV +EL IG Q I L R A + S++++L S L + + + Sbjct: 378 RLCDGVEQEL--------IGKKTGSFQSIDAAL---RAAMESSLRKILTPTSSLDLLREI 426 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 ++ P N RP+VI +VGVNGVGK+T + K+ + +V++AA DTFRS A++ Sbjct: 427 EAVTSPSNSQKQRRPYVISIVGVNGVGKSTNLSKICFFLLQNNYRVLIAACDTFRSGAVE 486 Query: 157 QLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 QL++ A R + E G DAA +A +A A DV++IDTAGR Sbjct: 487 QLRVHA-RNLKELSARENVGQVELYEKGYGKDAANVAKDAVAYAAVNNFDVVLIDTAGRR 545 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGL 261 HN+ LM+ + K + + P + V +A G +++ Q F+ GT G Sbjct: 546 HNDQRLMSSLEKFAKFAQ------PDKIFMVGEALVGTDSVMQARNFNQAFGTGRKLDGF 599 Query: 262 IMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 IM+K D G L+ +V IP+ FLG+G+ DL Sbjct: 600 IMSKCDTVGDMVGALVSMVHATGIPIVFLGIGQHYGDL 637 >gi|255325261|ref|ZP_05366367.1| signal recognition particle protein [Corynebacterium tuberculostearicum SK141] gi|255297826|gb|EET77137.1| signal recognition particle protein [Corynebacterium tuberculostearicum SK141] Length = 549 Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 89/282 (31%), Positives = 144/282 (51%), Gaps = 26/282 (9%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + V + ++ + + +VS Q+V+ V+E + ++L ++ N Sbjct: 38 LLEADVSLTVVRGFIKRIKERARGAEVSEALNPAQQVVKIVNEELIEILGGETRRLNL-A 96 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164 + P VI++ G+ G GKTT+ GKL+K ++ G ML A D R A+ QL+I +R Sbjct: 97 KNPPTVIMLAGLQGAGKTTLAGKLAKHLAKQGHTPMLVACDLQRPGAVQQLQIVGERAEV 156 Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 TS D E+G+ D +A +A+ K+ DV+IIDTAGRL + LM Sbjct: 157 PTFAPDPGTSLDSNEHEMGTSHGDPVDVAKRGIAEAKQKQHDVVIIDTAGRLGIDETLMT 216 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + IR D P VL V+D+ GQ+A++ E F TG+++TK+DG ARGG Sbjct: 217 Q-ARNIR-----DAVNPDEVLFVIDSMIGQDAVQTAEAFRDGVDFTGVVLTKLDGDARGG 270 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ + GE ++D + F + S+ I G D Sbjct: 271 AALSIREVTGKPIMYASTGEKLDDFDVFHPERMSSRILGMGD 312 >gi|189425506|ref|YP_001952683.1| signal recognition particle protein [Geobacter lovleyi SZ] gi|189421765|gb|ACD96163.1| signal recognition particle protein [Geobacter lovleyi SZ] Length = 463 Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 90/287 (31%), Positives = 143/287 (49%), Gaps = 24/287 (8%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSE 90 +D +++ L ++ L+ +D+ V + VE + K +V V R+++D E Sbjct: 24 EDNIKDALREVRLALLEADVNFKVVKDFVENVRLKAVGTEVMQSLAPGQQVVRIVHD--E 81 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVIL-VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 LI LM + N D + +P V+L +VG+ G GKTT GKL + + +L D Sbjct: 82 LIT--LMGGDQDNNLDLAAKPPVVLMLVGLQGAGKTTTCGKLGSWLRKQKRRPLLVPADV 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI+QLK + + D S+ G + + A + A+ D +++DTAGR + Sbjct: 140 YRPAAIEQLKTVGRQLNIDVFDSQTGQEPVDICSAAVRFAELNGFDTVLLDTAGRHQIDD 199 Query: 210 ILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM L+R+ A P +L V DA TGQ A+ F+ G TG+I++K+DG Sbjct: 200 FLM-------NELERIKAAAQPREILFVADAMTGQEAVTVAGGFNDRLGITGVILSKLDG 252 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 A+GG + I PV F+G+GE ++ LE F + I G D Sbjct: 253 DAKGGAALSIKAVTGAPVKFVGLGEKLDALEVFHPDRLVSRILGMGD 299 >gi|302504693|ref|XP_003014305.1| hypothetical protein ARB_07612 [Arthroderma benhamiae CBS 112371] gi|291177873|gb|EFE33665.1| hypothetical protein ARB_07612 [Arthroderma benhamiae CBS 112371] Length = 650 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 91/283 (32%), Positives = 138/283 (48%), Gaps = 40/283 (14%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLY-DVSELIHKMLMP----- 98 +ED L++ ++ A ++ E EL+ K+ A S+ L + + K+L P Sbjct: 361 MEDHLLKKNVAREAAVRLCEGVQKELVGKKTASFQSIDSALRAGMESSLRKILTPTTSLD 420 Query: 99 -------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 ++ P N RP+VI VVGVNGVGK+T + KL + KV++AA DTFR Sbjct: 421 LLREIEVVTSPTNQQHPRRPYVISVVGVNGVGKSTNLSKLCFFLLQNKYKVLIAACDTFR 480 Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200 S A++QL++ A R + E G DAA +A +A A + DV++ID Sbjct: 481 SGAVEQLRVHA-RNLKELSARENAGHVELYEKGYGKDAANVAKDAVAYAASNDFDVVLID 539 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258 TAGR HN+ LM+ + K + P +L V +A G +++ Q F+ G Sbjct: 540 TAGRRHNDQRLMSSLEKFAKFAN------PDKILMVGEALVGTDSVMQARNFNQAFGPGR 593 Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G I++K D G L+ +V IP+ FLGVG+ DL Sbjct: 594 GLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 636 >gi|266624043|ref|ZP_06116978.1| signal recognition particle protein [Clostridium hathewayi DSM 13479] gi|288864130|gb|EFC96428.1| signal recognition particle protein [Clostridium hathewayi DSM 13479] Length = 327 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 87/304 (28%), Positives = 157/304 (51%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ ++ RL + V+ L+++ L+ +D+ V ++ + + + Sbjct: 3 FESLSDKLQNVFKNLRGKGRLTEADVKAALKEVKMALLEADVSFRVVKQFISAVQERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + ++ + + ++ +I++ G+ G GKTT K+ Sbjct: 63 QDVMNSLTPGQMVIKIVNEELVNLMGSETTEIHLKPANEITIIMMAGLQGAGKTTTTAKI 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K+ G K +LAA D +R AAI QL+I ++ A +A A + A Sbjct: 123 AGKLKAKGRKPLLAACDVYRPAAIKQLQINGEKQGVPVFSMGENHKPADIAKAAVEHASK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +V+I+DTAGRLH + +M +++ + + ++ H ++L V+DA TGQ+A+ M Sbjct: 183 NDQNVVILDTAGRLHIDEDMM---NELVEIKEAVEVH--QTIL-VVDAMTGQDAVNVAGM 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G G+I+TK+DG RGG + I P+ ++G+GE ++DLE F ++ I Sbjct: 237 FNDKIGIDGVILTKLDGDTRGGAALSIRSVTGKPILYIGMGEKLSDLEQFYPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|167648842|ref|YP_001686505.1| signal recognition particle protein [Caulobacter sp. K31] gi|167351272|gb|ABZ74007.1| signal recognition particle protein [Caulobacter sp. K31] Length = 511 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 89/289 (30%), Positives = 153/289 (52%), Gaps = 17/289 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY---DVSEL 91 ++S + +D+ +RE + L+ +D+ + V + + + K A +V R + V ++ Sbjct: 21 VLSEKDIDEALRE-VRVALLEADVALPVVKDFISK--AKEAASGEAVIRSVKPADQVVKI 77 Query: 92 IHKMLMPL---SKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAA 146 ++ L+ + P + + + P VIL+ G+ G GKTT GKL+ +++ K V++A+ Sbjct: 78 VYDGLVDMLGGEVPTGLNLALNPPSVILMAGLQGSGKTTTTGKLALRLNKVERKKVLVAS 137 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 DT R AA++QL + A + + + G AA +A A A+ DVLI+DTAGR Sbjct: 138 LDTRRPAAMEQLAMLAKQVEVECLPIVPGQSAADIARRALTAAKLGGYDVLILDTAGRTT 197 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + +M+ ++ R+ + P L V D+ TGQ+A+R + FH TGLI+T+ Sbjct: 198 LDEAMMSEAAEIARIAQ------PSETLLVADSLTGQDAVRTAKAFHERLPLTGLILTRA 251 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG RGG + + +P+ FLG GE I+ L+ F A+ + I G D Sbjct: 252 DGDGRGGAALSMRHVTGLPIKFLGAGEKIDALDVFDARRVAGRILGQGD 300 >gi|154174570|ref|YP_001408556.1| signal recognition particle protein [Campylobacter curvus 525.92] gi|112803067|gb|EAU00411.1| signal recognition particle protein [Campylobacter curvus 525.92] Length = 446 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 73/217 (33%), Positives = 116/217 (53%), Gaps = 9/217 (4%) Query: 99 LSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 L+ P N F S P ++L+ G+ G GKTT KL+ + KV++AA D R AA+ Sbjct: 79 LTAPGNQGFVYSSSAPTIVLMAGLQGSGKTTTTIKLANYLKLRKKKVLVAACDLQRLAAV 138 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 +QL+ + D E +D +A A ++A++ DVL++DTAGRL + LM I Sbjct: 139 EQLRQLCEANEIDLFFIEGENDPIKVARAALQKAKSGLYDVLLVDTAGRLAIDETLMNEI 198 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 + +K PH + V DA +GQ+ ++ F+ TG+I++K D ++GG Sbjct: 199 KLVKEAIK------PHEIFYVADAMSGQDGVKSAASFNEALNITGVILSKFDSDSKGGVA 252 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 I I +IP+ F+G+GE +DLE F+ + + I G Sbjct: 253 ISIAKQLEIPLRFVGIGEKASDLESFIPERIVSRIMG 289 >gi|150398289|ref|YP_001328756.1| signal recognition particle protein [Sinorhizobium medicae WSM419] gi|150029804|gb|ABR61921.1| signal recognition particle protein [Sinorhizobium medicae WSM419] Length = 514 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 114/206 (55%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GK++K+++ K V++A+ DT R AA +QL+ +T D Sbjct: 100 PVVIMMVGLQGSGKTTTTGKIAKRLTARDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ D++I+DTAGR H + LM + ++ R + Sbjct: 160 LPIIAGQSPTDIAARAVQAAKLGGHDIVILDTAGRTHIDEPLMMEMAEIKR------KSS 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH +L V DA TGQ+A+ F G TGL++T+MDG RGG + + P+ + Sbjct: 214 PHEILLVADALTGQDAVNLARSFDERVGITGLVLTRMDGDGRGGAALSMRAITGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE +++LE F + + I G D Sbjct: 274 GVGEKMDELEEFHPRRVADRILGMGD 299 >gi|298253307|ref|ZP_06977099.1| signal recognition particle GTPase [Gardnerella vaginalis 5-1] gi|297532702|gb|EFH71588.1| signal recognition particle GTPase [Gardnerella vaginalis 5-1] Length = 556 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 94/323 (29%), Positives = 152/323 (47%), Gaps = 35/323 (10%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F+S + +L + S +L DG E+ L+ +D+ + V + + + Sbjct: 4 FSSLTDRLSNAFKHLRSKGKLSESDIDGTIREIRRALLDADVALEVVRSFTARIRERALG 63 Query: 77 KDVS-----VQRVLYDVS-ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++VS Q+V+ V+ EL + + + N+ + P VI++ G+ G GKTT+ GK Sbjct: 64 EEVSHALNPAQQVVKIVNDELTQVLGAGVDRQLNF-AKYPPTVIMLAGLQGAGKTTLAGK 122 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175 L + DAG +L A D R A+ QL++ +R E G Sbjct: 123 LGYWLKDAGHTPLLVAADLQRPNAVTQLQVVGERAGVPVFAPEKGVQTGGSAISLPWFTK 182 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 D +A ++ A+ K D +IIDTAGRL + LM K R ++ D P VL Sbjct: 183 GDPVKVARDSINYAREKMYDTVIIDTAGRLGVDEELM----KQARNIR--DAVQPQEVLF 236 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DA GQ+A+R + F+ TG++++K+DG ARGG + + P+ F GEG+ Sbjct: 237 VIDAMIGQDAVRTAQAFNDGVNFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEGL 296 Query: 296 NDLEPFVAKDFSAVITGCLDYGE 318 D E F ++ I LD G+ Sbjct: 297 KDFEIFHPDRMASRI---LDMGD 316 >gi|283782828|ref|YP_003373582.1| signal recognition particle protein [Gardnerella vaginalis 409-05] gi|297242896|ref|ZP_06926834.1| signal recognition particle GTPase [Gardnerella vaginalis AMD] gi|283441946|gb|ADB14412.1| signal recognition particle protein [Gardnerella vaginalis 409-05] gi|296889107|gb|EFH27841.1| signal recognition particle GTPase [Gardnerella vaginalis AMD] Length = 556 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 94/323 (29%), Positives = 152/323 (47%), Gaps = 35/323 (10%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F+S + +L + S +L DG E+ L+ +D+ + V + + + Sbjct: 4 FSSLTDRLSNAFKHLRSKGKLSESDIDGTIREIRRALLDADVALEVVRSFTARIRERALG 63 Query: 77 KDVS-----VQRVLYDVS-ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++VS Q+V+ V+ EL + + + N+ + P VI++ G+ G GKTT+ GK Sbjct: 64 EEVSHALNPAQQVVKIVNDELTQVLGAGVDRQLNF-AKYPPTVIMLAGLQGAGKTTLAGK 122 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175 L + DAG +L A D R A+ QL++ +R E G Sbjct: 123 LGYWLKDAGHTPLLVAADLQRPNAVTQLQVVGERAGVPVFAPEKGVQTGGSAISLPWFTK 182 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 D +A ++ A+ K D +IIDTAGRL + LM K R ++ D P VL Sbjct: 183 GDPVKVARDSINYAREKMYDTVIIDTAGRLGVDEELM----KQARNIR--DAVQPQEVLF 236 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DA GQ+A+R + F+ TG++++K+DG ARGG + + P+ F GEG+ Sbjct: 237 VIDAMIGQDAVRTAQAFNDGVNFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEGL 296 Query: 296 NDLEPFVAKDFSAVITGCLDYGE 318 D E F ++ I LD G+ Sbjct: 297 KDFEIFHPDRMASRI---LDMGD 316 >gi|319951000|ref|ZP_08024870.1| signal recognition particle protein [Dietzia cinnamea P4] gi|319435343|gb|EFV90593.1| signal recognition particle protein [Dietzia cinnamea P4] Length = 529 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 97/317 (30%), Positives = 150/317 (47%), Gaps = 30/317 (9%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + D+ RL D E+ L+ +D+ + V + + + K A Sbjct: 2 FESLSDRLTGALKDLRGKGRLSDADIDATAREIRLALLEADVALPVVRAFISRV--KERA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPLS-----KPFNWDFSHRPH-VILVVGVNGVGKTTVIGK 130 K V L +++ + L+ + +F+ +P VI++ G+ G GKTT+ GK Sbjct: 60 KGAEVSEALNPAQQVVKIVDAELTAILGGEARRIEFAKQPPTVIMLAGLQGAGKTTLAGK 119 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR----TSADFVCSEIGSDAA------- 179 L+ + G +L A D R A+DQL+I +R T A + +G D A Sbjct: 120 LAYWLKGQGHTPLLVACDLQRPGAVDQLRIVGERAGVQTFAPHPGTSVGGDGAEIGVQEP 179 Query: 180 -ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 ++A A+AK DV+I+DTAGRL + +MA + IR D PH VLD Sbjct: 180 VSVAQRGLAHARAKMHDVVIVDTAGRLGIDEEMMA-QARGIR-----DAVQPHETFFVLD 233 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A GQ+A+ E F G TG+++TK+DG ARGG + + P+ F GE + D Sbjct: 234 AMIGQDAVVTAEAFREGVGFTGVVLTKLDGDARGGAALSVRELTGTPIMFASDGEKLEDF 293 Query: 299 EPFVAKDFSAVITGCLD 315 + F + S+ I G D Sbjct: 294 DVFHPERMSSRILGMGD 310 >gi|329962381|ref|ZP_08300385.1| signal recognition particle protein [Bacteroides fluxus YIT 12057] gi|328530104|gb|EGF56989.1| signal recognition particle protein [Bacteroides fluxus YIT 12057] Length = 440 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 79/265 (29%), Positives = 140/265 (52%), Gaps = 13/265 (4%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99 V E L+D+ L+ +D+ VA+ + + TK ++V + + + +++H L L Sbjct: 26 NVAETLKDVRKALLDADVNYKVAKNFTDTVKTKALGQNVLTAVKPSQLMVKIVHDELTQL 85 Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156 + + +P VIL+ G+ G GKTT GKL++ + S K +L A D +R AAI+ Sbjct: 86 MGGETAEINIDSKPAVILMSGLQGSGKTTFSGKLARMLKSKKNRKPLLVACDVYRPAAIE 145 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL++ A++ D +A A +A+AK D++I+DTAGRL + +M I Sbjct: 146 QLRVLAEQIEVPMYSEPDSKDPVRIAQNAILEAKAKGYDLVIVDTAGRLAVDEEMMNEIA 205 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + + + P+ +L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + Sbjct: 206 AIKKAIN------PNEILFVVDSMTGQDAVNTAKEFNERLDFNGVVLTKLDGDTRGGAAL 259 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301 I P+ F+G GE ++ ++ F Sbjct: 260 SIRSVVNKPIKFVGTGEKLDAIDQF 284 >gi|171463017|ref|YP_001797130.1| signal recognition particle protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192555|gb|ACB43516.1| signal recognition particle protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 460 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 87/276 (31%), Positives = 143/276 (51%), Gaps = 14/276 (5%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDV--SELIHKMLMPLSK 101 E+ L+ +D+ + V + ++E++ K ++V S + L V EL M ++ Sbjct: 33 EIRLALLEADVALPVVKSLLEQIKFKALGEEVVGSLSPGQALVGVVQRELAQVMQSDTNQ 92 Query: 102 PFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLK 159 + + +P VIL+ G+ G GKTT +GKL+K + + K V+ + D +R AAI+QL+ Sbjct: 93 SGELNLATQPPAVILMAGLQGAGKTTSVGKLAKWLQEKKKKKVLTVSCDVYRPAAIEQLE 152 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 + A+F S+I +A A A+ DV+++DTAGRL + LM I + Sbjct: 153 TVTKQVGAEFFPSDISQKPNDIALAALDWARHHYFDVVLVDTAGRLGIDEALMQEIKTLH 212 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 L P L V+DA GQ+A+ + FH TG+I+TK+DG +RGG + + Sbjct: 213 SSLN------PIETLFVVDAMLGQDAVNTAKAFHEALPLTGVILTKLDGDSRGGAALSVR 266 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P+ F+GV E ++ LE F A+ + I G D Sbjct: 267 QITGVPLKFIGVAEKMDGLEAFDAERMANRILGMGD 302 >gi|224539094|ref|ZP_03679633.1| hypothetical protein BACCELL_03995 [Bacteroides cellulosilyticus DSM 14838] gi|224519284|gb|EEF88389.1| hypothetical protein BACCELL_03995 [Bacteroides cellulosilyticus DSM 14838] Length = 439 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 82/279 (29%), Positives = 144/279 (51%), Gaps = 13/279 (4%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99 V E L+D+ L+ +D+ VA+ + + K ++V + + + +++H L L Sbjct: 26 NVAETLKDVRKALLDADVNYKVAKTFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQL 85 Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156 + D +P VIL+ G+ G GKTT GKL++ + + K +L A D +R AAI+ Sbjct: 86 MGGETAEIDLEGKPAVILMSGLQGSGKTTFSGKLARMLKTKKNKKPLLVACDVYRPAAIE 145 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL++ A++ + +A A ++A+AK DV+I+DTAGRL + +M I Sbjct: 146 QLRVLAEQIGVPIYSEPDSKNPVKIAENAIQEAKAKGYDVVIVDTAGRLAVDEEMMNEIA 205 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + + + P+ +L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + Sbjct: 206 AIKKAIN------PNEILFVVDSMTGQDAVNTAKEFNERLDFNGVVLTKLDGDTRGGAAL 259 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I P+ F+G GE ++ ++ F S I G D Sbjct: 260 SIRSVVNKPIKFVGTGEKLDAIDQFHPSRMSDRILGMGD 298 >gi|315053627|ref|XP_003176188.1| signal recognition particle receptor subunit alpha [Arthroderma gypseum CBS 118893] gi|311338034|gb|EFQ97236.1| signal recognition particle receptor subunit alpha [Arthroderma gypseum CBS 118893] Length = 650 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 137/283 (48%), Gaps = 40/283 (14%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSK-- 101 +ED L++ ++ A ++ E EL+ K+ A S+ L + + K+L P S Sbjct: 361 MEDHLLKKNVAREAAVRLCEGVQKELVGKKTASFQSIDSALRAGMESSLRKILTPTSSLD 420 Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 P N RP+VI VVGVNGVGK+T + KL + KV++AA DTFR Sbjct: 421 LLREIEVVTSPTNRQQPRRPYVISVVGVNGVGKSTNLSKLCFFLLQNKYKVLIAACDTFR 480 Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200 S A++QL++ A R + E G DAA +A +A A DV++ID Sbjct: 481 SGAVEQLRVHA-RNLKELSARENAGHVELYEKGYGKDAANVAKDAVSYAATNDFDVVLID 539 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258 TAGR HN+ LM+ + K + P +L V +A G +++ Q F+ G+ Sbjct: 540 TAGRRHNDQRLMSSLEKFAKFAN------PDKILMVGEALVGTDSVMQARNFNQAFGSGR 593 Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G I++K D G L+ +V IP+ FLGVG+ DL Sbjct: 594 GLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 636 >gi|307353993|ref|YP_003895044.1| GTP-binding signal recognition particle SRP54 G- domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307157226|gb|ADN36606.1| GTP-binding signal recognition particle SRP54 G- domain protein [Methanoplanus petrolearius DSM 11571] Length = 441 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 94/277 (33%), Positives = 135/277 (48%), Gaps = 24/277 (8%) Query: 47 EELEDLLIRSDIGV--------AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 ++L+ +L+++D+ V A+ Q+ +EE K + V R++Y EL++ M Sbjct: 32 KDLQRVLLQADVNVKLVMNLSKAIKQRSLEEEPPKGMSVREHVLRIVY--QELVNLMGEE 89 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 + + + P IL+ G+ G GKTT GKLS+ GL+V + D FR A DQL Sbjct: 90 I------EVTLGPQTILMAGLQGSGKTTTTGKLSRYFQKKGLRVGVICADVFRPGAYDQL 143 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 K D+ + +A + KQ K +VLIIDT GR L+ I K+ Sbjct: 144 KTLCDKVNVPCYGEPGEINAVKIVENGMKQL--KNAEVLIIDTQGRHALEDELIDEIIKI 201 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 + K A H L VLDA GQ A Q FH G+I+TKMDGTA+GGG + Sbjct: 202 NDLSK-----ASHRWL-VLDAALGQQAREQAARFHDAINIDGVIITKMDGTAKGGGALSA 255 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 V + F+G GE I+DLE F F + + G D Sbjct: 256 VAETGSGIVFVGSGETIDDLERFDPDSFISRLLGMGD 292 >gi|51598948|ref|YP_073136.1| signal recognition particle protein [Borrelia garinii PBi] gi|51573519|gb|AAU07544.1| signal recognition particle protein [Borrelia garinii PBi] Length = 444 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 109/207 (52%), Gaps = 6/207 (2%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 ++ IL++G+ G GKTT KLS K+ KV+L A DTFR+AAI+QLKI + Sbjct: 99 NKQSYILMLGLQGSGKTTTCAKLSLKLKKENRKVLLVAADTFRAAAIEQLKILGSQIGVP 158 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 D + + K A+++ D +I+DT GRL S+L+ I K+ +LK Sbjct: 159 VFSLTGEKDPIKIVKASIKFAESEFFDSVIVDTRGRLEVESLLVEEIKKIKDILK----- 213 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P + V+D+ GQ A+ + F+ G TG I +K D RGG ++ +P+ F Sbjct: 214 -PTETILVVDSMMGQVAVNIAKEFNENVGLTGAIFSKFDSDTRGGAVLSFKSICAVPIKF 272 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +GVGE + DL+ F + ++ I G D Sbjct: 273 IGVGERVEDLDSFYPERIASRILGMGD 299 >gi|312278265|gb|ADQ62922.1| SRP54, signal recognition particle GTPase protein, putative [Streptococcus thermophilus ND03] Length = 520 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 109/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + M+ A D +R AAIDQLK + + Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLIKEQEARPMMIAADIYRPAAIDQLKTLGQQINVPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + A + +QA+A K D ++IDTAGRL + LM K +R +K D Sbjct: 161 FDMGTETPAVEIVRNGLEQARANKNDYVLIDTAGRLQIDETLM----KELRDIK--DFAH 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P+ +L V+D+ GQ A + F+ TG+++TK+DG RGG + I P+ F Sbjct: 215 PNEILLVVDSMIGQEAANVAKEFNEQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFT 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I D+E F S+ I G D Sbjct: 275 GTGEKITDIETFHPDRMSSRILGMGD 300 >gi|228992573|ref|ZP_04152500.1| Signal recognition particle protein [Bacillus pseudomycoides DSM 12442] gi|228998621|ref|ZP_04158208.1| Signal recognition particle protein [Bacillus mycoides Rock3-17] gi|229006121|ref|ZP_04163809.1| Signal recognition particle protein [Bacillus mycoides Rock1-4] gi|228755197|gb|EEM04554.1| Signal recognition particle protein [Bacillus mycoides Rock1-4] gi|228761089|gb|EEM10048.1| Signal recognition particle protein [Bacillus mycoides Rock3-17] gi|228767207|gb|EEM15843.1| Signal recognition particle protein [Bacillus pseudomycoides DSM 12442] Length = 449 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K ML A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ D ++IDTAGRLH + LM + K+ V K Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+DA TGQ+A+ + FH G TG+++TK+DG RGG + I P+ Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ +E F + ++ I G D Sbjct: 273 FAGMGEKLDAIEAFHPERMASRILGMGD 300 >gi|118466702|ref|YP_882942.1| signal recognition particle protein [Mycobacterium avium 104] gi|118167989|gb|ABK68886.1| signal recognition particle protein [Mycobacterium avium 104] Length = 517 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 94/311 (30%), Positives = 150/311 (48%), Gaps = 23/311 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + + RL D E+ L+ +D+ + V + V + + Sbjct: 2 FESLSDRLTSALAGLRGKGRLTDADIEATTREIRLALLEADVSLPVVRAFVTRIKERAKG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L ++ + + P VI++ G+ G GKT++ GKL Sbjct: 62 AEVSGALNPAQQVVKIVNEELIGILGGETRQLAFAKTP-PTVIMLAGLQGSGKTSLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184 + + G +L A D R AA++QL++ +R G+ D A+A + Sbjct: 121 AAWLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAQ 180 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 +A+AK DV+I+DTAGRL + LMA IR D P +L VLDA GQ+ Sbjct: 181 GLAEARAKHHDVVIVDTAGRLGIDDELMA-QAAAIR-----DAIDPDEILFVLDAMIGQD 234 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ E F G TG+++TK+DG ARGG + + +P+ F GE + D + F Sbjct: 235 AVTTAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294 Query: 305 DFSAVITGCLD 315 S+ I G D Sbjct: 295 RMSSRILGMGD 305 >gi|1711512|sp|P49972|SR542_SOLLC RecName: Full=Signal recognition particle 54 kDa protein 2; Short=SRP54 gi|556902|emb|CAA84288.1| 54-kD signal recognition particle (SRP) specific protein [Solanum lycopersicum] Length = 499 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 105/207 (50%), Gaps = 6/207 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P +++ VG+ G GKTT K + G K L DTFR+ A DQLK A + F Sbjct: 100 KPSIVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S SD +A + + + + D++I+DT+GR + L + ++ K Sbjct: 160 YGSYTESDPVKIAVDGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVAEATK------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P V+ V+D++ GQ A Q + F +I+TKMDG A+GGG + V K PV F+ Sbjct: 214 PDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLDY 316 G GE +++ E F K F + + G D+ Sbjct: 274 GTGEHMDEFEVFDVKPFVSRLLGMGDW 300 >gi|227544363|ref|ZP_03974412.1| Sec family type I general secretory pathway protein signal recognition particle protein [Lactobacillus reuteri CF48-3A] gi|300909776|ref|ZP_07127237.1| signal recognition particle protein [Lactobacillus reuteri SD2112] gi|227185626|gb|EEI65697.1| Sec family type I general secretory pathway protein signal recognition particle protein [Lactobacillus reuteri CF48-3A] gi|300893641|gb|EFK87000.1| signal recognition particle protein [Lactobacillus reuteri SD2112] Length = 481 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 89/304 (29%), Positives = 149/304 (49%), Gaps = 25/304 (8%) Query: 30 EGITDIISS-----RR----LDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAK 77 EG+TD + RR + +RE + ++ L+ +D+ V + V+ + K Sbjct: 4 EGLTDRLQKAMEKLRRKPKVTEADLRETMREIRLALLEADVNFKVVKDFVKTVREKAAGA 63 Query: 78 DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 +V Q+++ V++ + K++ + P N H P VI++VG+ G GKTT GKL+ Sbjct: 64 EVLKGLNPAQQIVKIVNDELTKLMGEEAVPLNK-APHIPTVIMMVGLQGAGKTTTAGKLA 122 Query: 133 KKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++ + + M A D +R AAI QL+ AD+ D + E + A+ Sbjct: 123 LRLKNENHARPMFIAADVYRPAAITQLQQVADQIDVPVFEKGTDVDPVEIVREGMEVAKK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +IIDTAGRL + LM + + ++ P+ +L V+D+ TGQNA+ + Sbjct: 183 NHNDYVIIDTAGRLQIDEQLMDELANIKELVN------PNEILLVIDSMTGQNAVNTAQG 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F TG+++TK+DG RGG + I P+ F+G GE + DL+ F ++ I Sbjct: 237 FDDKLDITGVVLTKLDGDTRGGAAMSIRAVTGKPIKFVGEGEKMEDLDVFHPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|229025286|ref|ZP_04181706.1| Signal recognition particle protein [Bacillus cereus AH1272] gi|228736039|gb|EEL86614.1| Signal recognition particle protein [Bacillus cereus AH1272] Length = 449 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K ML A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKYNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ D ++IDTAGRLH + LM + K+ V K Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+DA TGQ+A+ + FH G TG+++TK+DG RGG + I P+ Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ +E F + ++ I G D Sbjct: 273 FAGMGEKLDAIEAFHPERMASRILGMGD 300 >gi|33591340|ref|NP_878984.1| signal recognition particle protein [Bordetella pertussis Tohama I] gi|33570982|emb|CAE40458.1| signal recognition particle protein [Bordetella pertussis Tohama I] gi|332380741|gb|AEE65588.1| signal recognition particle protein [Bordetella pertussis CS] Length = 469 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 76/218 (34%), Positives = 114/218 (52%), Gaps = 16/218 (7%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA----------GLKVMLAAGDTFRSAAIDQ 157 + P VIL+ G+ G GKTT GKL++ +S+ KV++ + D +R AAI+Q Sbjct: 101 TQPPAVILMAGLQGAGKTTTTGKLARWLSEGQHVQGGRKTGKKKVLVVSADVYRPAAIEQ 160 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 LK A + DF+ S++ +A A A+ DVLI+DTAGRL + +M + Sbjct: 161 LKTVAAQVGVDFLPSDVSQKPEDIARNAIDHARRHHYDVLIVDTAGRLGIDEAMM----R 216 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 IR L D P L V+DA GQ+A+ F TG+++TK+DG ARGG + Sbjct: 217 EIRALH--DLVKPIETLFVVDAMQGQDAVNTARAFGDALPLTGVVLTKLDGDARGGAALS 274 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + P+ F+GV E ++ LEPF + + + G D Sbjct: 275 VRHVTGKPLKFVGVSEKLDGLEPFHPERMAQRVLGMGD 312 >gi|159185333|ref|NP_355632.2| signal recognition particle protein [Agrobacterium tumefaciens str. C58] gi|159140588|gb|AAK88417.2| signal recognition particle protein [Agrobacterium tumefaciens str. C58] Length = 523 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 116/206 (56%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GK++K+++D K V++A+ DT R AA +QL+ +T D Sbjct: 100 PVVIMMVGLQGSGKTTTTGKIAKRLTDRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ DV+I+DTAGR H + LM +M + K+ +PH Sbjct: 160 LPIIAGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLML---EMADIKKKSNPH- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +L V D+ TGQ+A+ F G TGL++T+MDG RGG + + P+ + Sbjct: 216 --EILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+GE +N+L+ F + + I G D Sbjct: 274 GIGERMNELDEFHPRRIADRILGMGD 299 >gi|15615047|ref|NP_243350.1| signal recognition particle [Bacillus halodurans C-125] gi|10175104|dbj|BAB06203.1| signal recognition particle [Bacillus halodurans C-125] Length = 451 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 110/209 (52%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 S P V+++VG+ G GKTT KL+ + +L A D +R AAI QL+ + + Sbjct: 98 SKPPTVVMMVGLQGAGKTTTTAKLANHLRKKHNRNPILVAADIYRPAAIKQLETLGKQLN 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 +A +A ++A+ + D ++IDTAGRLH + LM + ++ V K Sbjct: 158 MPVFSLGDQVSPVEIAKQAIERAKEEHHDYVLIDTAGRLHIDEELMDELQQVKEVAK--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P +L V+DA TGQ+A+ E FH +G+++TK+DG RGG + + P+ Sbjct: 215 ---PDEILLVVDAMTGQDAVNVAESFHEQLDVSGVVLTKLDGDTRGGAALSVKAVTNTPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE I+ LEPF + ++ I G D Sbjct: 272 KFAGMGEKIDQLEPFHPERMASRILGMGD 300 >gi|317405653|gb|EFV85951.1| ffh protein [Achromobacter xylosoxidans C54] Length = 468 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 77/215 (35%), Positives = 112/215 (52%), Gaps = 16/215 (7%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG----------LKVMLAAGDTFRSAAIDQLKI 160 P VIL+ G+ G GKTT GKL++ +S+ KV++ + D +R AAIDQLK Sbjct: 104 PAVILMAGLQGAGKTTTTGKLARWLSEGQHTQHGRKTGKKKVLVVSADVYRPAAIDQLKS 163 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A + DF+ S+ +A A A+ DVLI+DTAGRL + +M + IR Sbjct: 164 VAAQVGVDFLPSDPSQKPEDIARNAVDHARRHHYDVLILDTAGRLGIDEAMM----REIR 219 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 L D P L V+DA GQ+A+ F TG+++TK+DG ARGG + + Sbjct: 220 ALH--DLVKPVETLFVVDAMQGQDAVNTARAFAEALPLTGVVLTKLDGDARGGAALSVRH 277 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+GV E ++ LEPF + + + G D Sbjct: 278 VTGKPLKFVGVSEKLDGLEPFYPERMAQRVLGMGD 312 >gi|85374323|ref|YP_458385.1| signal recognition particle GTPase [Erythrobacter litoralis HTCC2594] gi|84787406|gb|ABC63588.1| signal recognition particle GTPase [Erythrobacter litoralis HTCC2594] Length = 500 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 89/267 (33%), Positives = 142/267 (53%), Gaps = 32/267 (11%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKML---------MP 98 L+ +D+ + VA+ ++++ K +DV SV Q+V+ V++ + ML +P Sbjct: 38 LLEADVALPVAKSFIDKVTEKAVGEDVLKSVTPGQQVIKIVNDELVAMLGGDDGEQGHVP 97 Query: 99 LS---KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAA 154 L+ KP P VI++VG+ G GKTT KLSK + + G K M+A+ D R AA Sbjct: 98 LTLEAKP--------PVVIMMVGLQGSGKTTTTAKLSKYIREKHGKKPMMASLDVNRPAA 149 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 +QL + ++ + G +A A + A+ + VDVL++DTAGRLH + LMA Sbjct: 150 QEQLAVLGEQVDVATLPIVQGQQPVDIARRALEAARLQNVDVLLLDTAGRLHVDEALMAE 209 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + + V AP VL V+D+ TGQ+A+ + F TG+++T+MDG ARGG Sbjct: 210 MKAVAGV------SAPTEVLLVVDSLTGQDAVNVAQNFSDEVPLTGVVLTRMDGDARGGA 263 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301 + + P+ F G GE ++ +E F Sbjct: 264 ALSMRAVTGKPIKFAGTGEKLDAIEAF 290 >gi|322492125|emb|CBZ27399.1| putative signal recognition particle [Leishmania mexicana MHOM/GT/2001/U1103] Length = 519 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 82/284 (28%), Positives = 138/284 (48%), Gaps = 15/284 (5%) Query: 42 DDGVRE---ELEDLLIRSDIGVAVAQK----IVEELLTKRYAKDVSVQRVLYD-VSELIH 93 +D V+E E+ L+++D+ V + +K I EL ++ +++L + V + Sbjct: 25 EDDVKELMNEIARALLQADVNVTIVKKLQVSIKTELALAEEGAGLNKRKILQNAVFNGLK 84 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 ++L P KPF + +V++ VG+ G GKTT K + G K L DTFR+ Sbjct: 85 RILDPGVKPF-IPVKGKQNVVMFVGLQGSGKTTSCTKYAAYFQRKGFKAALVCADTFRAG 143 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A DQL+ A + F S +D A+A E + + +K D++I+DT+GR S L Sbjct: 144 AYDQLRQNATKAKVRFYGSLTEADPVAIAKEGVAELKKEKYDLIIVDTSGRHKQESALFE 203 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + ++ +K P+ ++ V+ AT GQ Q F + +I+TK+D +GG Sbjct: 204 EMKQVEEAVK------PNDIVFVMSATDGQAVEEQARNFKEMVAVGSVIVTKLDCQTKGG 257 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317 G + V + P+ F+G GE D + F + F + G D G Sbjct: 258 GALSAVAATRSPIVFIGTGEHFEDFDLFNPERFVQKMLGMGDIG 301 >gi|225571995|ref|ZP_03780859.1| hypothetical protein RUMHYD_00289 [Blautia hydrogenotrophica DSM 10507] gi|225040528|gb|EEG50774.1| hypothetical protein RUMHYD_00289 [Blautia hydrogenotrophica DSM 10507] Length = 449 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 87/305 (28%), Positives = 150/305 (49%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S + KL+ ++ S RL + V+ L ++ L+ +D+ V ++ ++ + + Sbjct: 3 FESLTEKLQNVFKNLRSKGRLTEADVKTALREVKMALLEADVNFKVVKQFIKSVQERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + ++ + + ++ G+ G GKTT KL Sbjct: 63 QDVMNGLNPGQMVIKIVNEEMVNLMGSETTEIPSKQGKEITIWMMAGLQGAGKTTTAAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + KM G K +L A D +R AAI QL++ ++ + + +A A + A+ Sbjct: 123 AGKMKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGDKNHPVDIAKAAVEHAKN 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVE 250 + +++IIDTAGRLH + M+R L+ + + + V+DA TGQ+A+ Sbjct: 183 NQQNLVIIDTAGRLHIDE-------DMMRELEEIKAQVDVDATILVVDAMTGQDAVNVAS 235 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G G+I+TKMDG RGG + I P+YF+G+GE ++DLE F ++ I Sbjct: 236 AFAEKVGIDGVILTKMDGDTRGGAALSIKAVSGKPIYFVGMGEKLSDLEQFYPDRMASRI 295 Query: 311 TGCLD 315 G D Sbjct: 296 LGMGD 300 >gi|254513963|ref|ZP_05126024.1| signal recognition particle protein [gamma proteobacterium NOR5-3] gi|219676206|gb|EED32571.1| signal recognition particle protein [gamma proteobacterium NOR5-3] Length = 457 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 90/305 (29%), Positives = 147/305 (48%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + + RL + G E+ L+ +D+ + V + V+ + + Sbjct: 2 FQNLSERLTQSLRAVTGKARLSEENIQGTLREVRMALLEADVALPVVVQFVKSVKQRALG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V Q L V + ++ ++ N + P VIL+ G+ G GKTT KL Sbjct: 62 QEVMSSLSPGQAFLKIVQAELESVMGSANEGLNL-ATQPPAVILLAGLQGAGKTTSAAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + K V + + D +R AAI QL+ A DF S + +A A + A+ Sbjct: 121 AKLLKERDKKKVTVVSADVYRPAAIKQLETLAAEIGVDFFPSTVDQKPVDIALAAREHAR 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + DVLI+DTAGRL + +MA I ++ + + P L V+DA TGQ+A + Sbjct: 181 IQFSDVLIVDTAGRLAVDEAMMAEIAELEKAV------TPVETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F TG+I+TK+D +RGG + + P+ FLGVGE L+PF ++ I Sbjct: 235 AFGEALPLTGVILTKVDADSRGGAALSVRQVTGKPIKFLGVGEKTEALDPFHPDRLASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|55820929|ref|YP_139371.1| signal recognition particle [Streptococcus thermophilus LMG 18311] gi|55822851|ref|YP_141292.1| signal recognition particle [Streptococcus thermophilus CNRZ1066] gi|116627717|ref|YP_820336.1| signal recognition particle [Streptococcus thermophilus LMD-9] gi|55736914|gb|AAV60556.1| signal recognition particle [Streptococcus thermophilus LMG 18311] gi|55738836|gb|AAV62477.1| signal recognition particle [Streptococcus thermophilus CNRZ1066] gi|116100994|gb|ABJ66140.1| signal recognition particle subunit FFH/SRP54 (srp54) [Streptococcus thermophilus LMD-9] Length = 520 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 109/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + M+ A D +R AAIDQLK + + Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLIKEQEARPMMIAADIYRPAAIDQLKTLGQQINVPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + A + +QA+A K D ++IDTAGRL + LM K +R +K D Sbjct: 161 FDMGTETPAVEIVRNGLEQARANKNDYVLIDTAGRLQIDETLM----KELRDIK--DFAH 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P+ +L V+D+ GQ A + F+ TG+++TK+DG RGG + I P+ F Sbjct: 215 PNEILLVVDSMIGQEAANVAKEFNEQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFT 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I D+E F S+ I G D Sbjct: 275 GTGEKITDIETFHPDRMSSRILGMGD 300 >gi|229086398|ref|ZP_04218574.1| Signal recognition particle protein [Bacillus cereus Rock3-44] gi|228696914|gb|EEL49723.1| Signal recognition particle protein [Bacillus cereus Rock3-44] Length = 449 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K ML A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ D ++IDTAGRLH + LM + K+ V K Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+DA TGQ+A+ + FH G TG+++TK+DG RGG + I P+ Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ +E F + ++ I G D Sbjct: 273 FAGMGEKLDAIEAFHPERMASRILGMGD 300 >gi|42527592|ref|NP_972690.1| signal recognition particle protein [Treponema denticola ATCC 35405] gi|41818420|gb|AAS12609.1| signal recognition particle protein [Treponema denticola ATCC 35405] gi|325474449|gb|EGC77636.1| signal recognition particle protein [Treponema denticola F0402] Length = 443 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 87/288 (30%), Positives = 140/288 (48%), Gaps = 19/288 (6%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDV----SVQRVLYD 87 I+ + ++D + EE++ L+ +D+ + V ++ + EE +R K V +++YD Sbjct: 22 ITEKNIEDTI-EEIKTALLDADVNLRVVRRFINATAEEAKGERVLKSVDPGQQFTKIVYD 80 Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 + L K + VIL +G+ G GKTT KL+ K+ + G K +L A Sbjct: 81 K---MTSFLGDEKKALDLRGPDTQSVILFLGLQGSGKTTSAAKLALKLKNEGRKPLLVAC 137 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 D R AA++QL + S V E DA +A A A+ D +I+DTAGRL Sbjct: 138 DLIRPAAVEQLSVLGGNISVP-VYKEETKDAVKVAKNALAFAKKNFYDTVIVDTAGRLQI 196 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + +M I + +K P + V D+ TGQ+A+ + F G +GLI+TK D Sbjct: 197 DEDMMKEIVNIKSAVK------PMETILVADSMTGQSAVDVAKEFDEQVGLSGLILTKFD 250 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + + P++++G GE + DLEPF ++ I G D Sbjct: 251 SDTRGGAALSLKTITGKPIFYIGTGEKLEDLEPFYPDRIASRILGMGD 298 >gi|120599794|ref|YP_964368.1| signal recognition particle protein [Shewanella sp. W3-18-1] gi|146292270|ref|YP_001182694.1| signal recognition particle protein [Shewanella putrefaciens CN-32] gi|120559887|gb|ABM25814.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella sp. W3-18-1] gi|145563960|gb|ABP74895.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella putrefaciens CN-32] Length = 457 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 96/305 (31%), Positives = 156/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIV----EELLT 72 F + + +L + +I RL ++ V+E L ++ L+ +D+ + V ++ V E + Sbjct: 2 FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 61 Query: 73 KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + AK +S Q + V + K + ++ + + P V+++ G+ G GKTT + KL Sbjct: 62 QEVAKSLSPGQAFIKIVQSELEKSMGEANEALDL-ATQPPAVLMMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + K V++ + D +R AAI QL+ A +F S++ +A A A+ Sbjct: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLAAEVDVEFFPSDVSQKPIDIAKAAIAHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K +DV+IIDTAGRLH + +M I + +K P L V+DA TGQ+A + Sbjct: 181 LKFIDVVIIDTAGRLHVDEAMMDEIKALHAAVK------PIETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|312795094|ref|YP_004028016.1| SIGNAL RECOGNITION PARTICLE, SUBUNIT FFH/SRP54 [Burkholderia rhizoxinica HKI 454] gi|312166869|emb|CBW73872.1| SIGNAL RECOGNITION PARTICLE, SUBUNIT FFH/SRP54 [Burkholderia rhizoxinica HKI 454] Length = 480 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT +GKL+K + + KV+ + D +R AAI QLK ++ ADF Sbjct: 129 PAVILMAGLQGAGKTTTVGKLAKLLREMQKKKVLTVSCDVYRPAAIAQLKTVTEQVGADF 188 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S+ +A +A A+ DVLI+DTAGRL + +M I + LK Sbjct: 189 FPSQPDQKPLDIARDALDWAKRHYHDVLIVDTAGRLGIDEAMMQEIAALHAQLK------ 242 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG +RGG + + P+ F+ Sbjct: 243 PAETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHVTGRPIKFV 302 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE ++ LE F + + I G D Sbjct: 303 GVGEKLDGLETFYPERMANRILGMGD 328 >gi|293365278|ref|ZP_06611995.1| signal recognition particle protein [Streptococcus oralis ATCC 35037] gi|307703819|ref|ZP_07640760.1| signal recognition particle protein [Streptococcus oralis ATCC 35037] gi|291316728|gb|EFE57164.1| signal recognition particle protein [Streptococcus oralis ATCC 35037] gi|307622654|gb|EFO01650.1| signal recognition particle protein [Streptococcus oralis ATCC 35037] Length = 523 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QAQA D ++IDTAGRL + +LM +R +K L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQANHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVIDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|33595209|ref|NP_882852.1| signal recognition particle protein [Bordetella parapertussis 12822] gi|33599497|ref|NP_887057.1| signal recognition particle protein [Bordetella bronchiseptica RB50] gi|33565286|emb|CAE36085.1| signal recognition particle protein [Bordetella parapertussis] gi|33567093|emb|CAE31006.1| signal recognition particle protein [Bordetella bronchiseptica RB50] Length = 469 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 92/292 (31%), Positives = 141/292 (48%), Gaps = 36/292 (12%) Query: 48 ELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103 E+ L+ +D+ + V + V E+ L + A +S + L V +HK L L Sbjct: 33 EVRMALLEADVALPVVRDFVARVKEKALGEEVAGSLSPGQALVGV---VHKELTSL---M 86 Query: 104 NWDF----------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA----------GLKVM 143 D + P VIL+ G+ G GKTT GKL++ +S+ KV+ Sbjct: 87 GGDLGEHAGELSLATQPPAVILMAGLQGAGKTTTTGKLARWLSEGQHVQGGRKTGKKKVL 146 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 + + D +R AAI+QLK A + DF+ S++ +A A A+ DVLI+DTAG Sbjct: 147 VVSADVYRPAAIEQLKTVAAQVGVDFLPSDVSQKPEDIARNAIDHARRHHYDVLIVDTAG 206 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 RL + +M + IR L D P L V+DA GQ+A+ F TG+++ Sbjct: 207 RLGIDEAMM----REIRALH--DLVKPIETLFVVDAMQGQDAVNTARAFGDALPLTGVVL 260 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TK+DG ARGG + + P+ F+GV E ++ LEPF + + + G D Sbjct: 261 TKLDGDARGGAALSVRHVTGKPLKFVGVSEKLDGLEPFHPERMAQRVLGMGD 312 >gi|114652596|ref|XP_001135953.1| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes] Length = 451 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E ++ + + +++I+DT+GR L +M++V + P Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D EPF + F + + G D Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299 >gi|30021933|ref|NP_833564.1| signal recognition particle protein [Bacillus cereus ATCC 14579] gi|218235010|ref|YP_002368646.1| signal recognition particle protein [Bacillus cereus B4264] gi|218898998|ref|YP_002447409.1| signal recognition particle protein [Bacillus cereus G9842] gi|228902348|ref|ZP_04066505.1| Signal recognition particle protein [Bacillus thuringiensis IBL 4222] gi|228909670|ref|ZP_04073493.1| Signal recognition particle protein [Bacillus thuringiensis IBL 200] gi|228922599|ref|ZP_04085899.1| Signal recognition particle protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228940933|ref|ZP_04103492.1| Signal recognition particle protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954121|ref|ZP_04116150.1| Signal recognition particle protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960061|ref|ZP_04121725.1| Signal recognition particle protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228973862|ref|ZP_04134438.1| Signal recognition particle protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980452|ref|ZP_04140762.1| Signal recognition particle protein [Bacillus thuringiensis Bt407] gi|229071343|ref|ZP_04204566.1| Signal recognition particle protein [Bacillus cereus F65185] gi|229111316|ref|ZP_04240869.1| Signal recognition particle protein [Bacillus cereus Rock1-15] gi|229129121|ref|ZP_04258094.1| Signal recognition particle protein [Bacillus cereus BDRD-Cer4] gi|229152044|ref|ZP_04280239.1| Signal recognition particle protein [Bacillus cereus m1550] gi|229162781|ref|ZP_04290738.1| Signal recognition particle protein [Bacillus cereus R309803] gi|229180121|ref|ZP_04307465.1| Signal recognition particle protein [Bacillus cereus 172560W] gi|29897489|gb|AAP10765.1| Signal recognition particle, subunit Ffh/SRP54 [Bacillus cereus ATCC 14579] gi|218162967|gb|ACK62959.1| signal recognition particle protein [Bacillus cereus B4264] gi|218540894|gb|ACK93288.1| signal recognition particle protein [Bacillus cereus G9842] gi|228603330|gb|EEK60807.1| Signal recognition particle protein [Bacillus cereus 172560W] gi|228620663|gb|EEK77532.1| Signal recognition particle protein [Bacillus cereus R309803] gi|228631393|gb|EEK88027.1| Signal recognition particle protein [Bacillus cereus m1550] gi|228654358|gb|EEL10223.1| Signal recognition particle protein [Bacillus cereus BDRD-Cer4] gi|228672092|gb|EEL27383.1| Signal recognition particle protein [Bacillus cereus Rock1-15] gi|228711797|gb|EEL63749.1| Signal recognition particle protein [Bacillus cereus F65185] gi|228779272|gb|EEM27529.1| Signal recognition particle protein [Bacillus thuringiensis Bt407] gi|228785887|gb|EEM33890.1| Signal recognition particle protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228799577|gb|EEM46530.1| Signal recognition particle protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805687|gb|EEM52277.1| Signal recognition particle protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818769|gb|EEM64835.1| Signal recognition particle protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228837028|gb|EEM82369.1| Signal recognition particle protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228849959|gb|EEM94790.1| Signal recognition particle protein [Bacillus thuringiensis IBL 200] gi|228857317|gb|EEN01820.1| Signal recognition particle protein [Bacillus thuringiensis IBL 4222] gi|326941614|gb|AEA17510.1| signal recognition particle protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 449 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K ML A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ D ++IDTAGRLH + LM + K+ V K Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+DA TGQ+A+ + FH G TG+++TK+DG RGG + I P+ Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ +E F + ++ I G D Sbjct: 273 FAGMGEKLDAIEAFHPERMASRILGMGD 300 >gi|329575670|gb|EGG57197.1| SRP54-type protein, GTPase domain protein [Enterococcus faecalis TX1467] Length = 120 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 59/109 (54%), Positives = 76/109 (69%) Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +DTAGRL N LM + K+ RV++R P APH VL V+DATTGQNA+ Q + F Sbjct: 1 MDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQAKQFKETTNF 60 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 TGL++TK+DGTA+GG +I I +PV +G+GEGINDLEPF A DF+ Sbjct: 61 TGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 109 >gi|229031475|ref|ZP_04187475.1| Signal recognition particle protein [Bacillus cereus AH1271] gi|229174511|ref|ZP_04302043.1| Signal recognition particle protein [Bacillus cereus MM3] gi|228609071|gb|EEK66361.1| Signal recognition particle protein [Bacillus cereus MM3] gi|228729764|gb|EEL80744.1| Signal recognition particle protein [Bacillus cereus AH1271] Length = 449 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K ML A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ D ++IDTAGRLH + LM + K+ V K Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+DA TGQ+A+ + FH G TG+++TK+DG RGG + I P+ Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ +E F + ++ I G D Sbjct: 273 FAGMGEKLDAIEAFHPERMASRILGMGD 300 >gi|327309164|ref|XP_003239273.1| signal sequence receptor alpha subunit [Trichophyton rubrum CBS 118892] gi|326459529|gb|EGD84982.1| signal sequence receptor alpha subunit [Trichophyton rubrum CBS 118892] Length = 650 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 90/283 (31%), Positives = 138/283 (48%), Gaps = 40/283 (14%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLY-DVSELIHKMLMP----- 98 +ED L++ ++ A ++ E EL+ K+ A S+ L + + K+L P Sbjct: 361 MEDHLLKKNVACEAAVRLCEGVQKELVGKKTASFQSIDSALRAGMESSLRKILTPTTSLD 420 Query: 99 -------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 ++ P N RP+VI VVGVNGVGK+T + KL + KV++AA DTFR Sbjct: 421 LLREIEVVTSPMNQQQPRRPYVISVVGVNGVGKSTNLSKLCFFLLQNKYKVLIAACDTFR 480 Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200 S A++QL++ A R + E G DAA +A +A A + +V++ID Sbjct: 481 SGAVEQLRVHA-RNLKELSARENAGHVELYEKGYGKDAANVAKDAVAYAASNDFEVVLID 539 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258 TAGR HN+ LM+ + K + P +L V +A G +++ Q F+ G Sbjct: 540 TAGRRHNDQRLMSSLEKFAKFAN------PDKILMVGEALVGTDSVMQARNFNQAFGPGR 593 Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G I++K D G L+ +V IP+ FLGVG+ DL Sbjct: 594 GLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 636 >gi|163733910|ref|ZP_02141352.1| signal recognition particle protein, putative [Roseobacter litoralis Och 149] gi|161393021|gb|EDQ17348.1| signal recognition particle protein, putative [Roseobacter litoralis Och 149] Length = 503 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 83/269 (30%), Positives = 138/269 (51%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA+ V+ + K + V+ Q+V+ V + + +L +P Sbjct: 38 LLEADVSLPVARDFVKAVQEKATGQAVTKSITPGQQVVKIVHDALIDVLKGEGEPGTLKV 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P +L+VG+ G GKTT KL+K++ + G +V++A+ D R AA++QL I + Sbjct: 98 DNPPAPVLMVGLQGSGKTTTTAKLAKRLKEKDGKRVLMASLDVNRPAAMEQLAILGAQIG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G D A+A A QA DV ++DTAGRL + LM + + +R D Sbjct: 158 VDTLPIIAGQDPVAIAKRAKTQAGLGGYDVYMLDTAGRLSIDEELMQQV-EAVR-----D 211 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+D TGQ+A+ + F G +G+++T+MDG RGG + + P+ Sbjct: 212 VANPRETLLVVDGLTGQDAVHTAQNFDERIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ LE F + I G D Sbjct: 272 KFVGLGEKMDALETFEPDRVAGRILGMGD 300 >gi|70728475|ref|YP_258224.1| signal recognition particle protein [Pseudomonas fluorescens Pf-5] gi|68342774|gb|AAY90380.1| signal recognition particle protein [Pseudomonas fluorescens Pf-5] Length = 458 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 157/306 (51%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KERA 59 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N D + P V+L+ G+ G GKTT GK Sbjct: 60 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLNLSAVPPAVVLMAGLQGAGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL+ A+ F S++ A+A A K+A Sbjct: 120 LARFLKERKKKSVMVVSADVYRPAAIKQLETLANDIGVTFFPSDLSQKPVAIAEAAIKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K +DV+I+DTAGRLH +S +M I + +K P L V+DA TGQ+A Sbjct: 180 KLKFIDVVIVDTAGRLHIDSEMMDEIQALHAAIK------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I+TK+DG ARGG + + P+ F+G+GE LEPF + ++ Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPERIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|313894639|ref|ZP_07828202.1| signal recognition particle protein [Veillonella sp. oral taxon 158 str. F0412] gi|313440829|gb|EFR59258.1| signal recognition particle protein [Veillonella sp. oral taxon 158 str. F0412] Length = 450 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 94/318 (29%), Positives = 156/318 (49%), Gaps = 36/318 (11%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F S S KL+E + I+ ++ +R+ + L+ +D+ VA+ V+ + K Sbjct: 3 FDSLSEKLQEAFQSLKGKGKITEEDVNLALRQ-VRTALLEADVNFMVAKDFVKSIKEKAL 61 Query: 76 AKDV-----SVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVG 123 ++V Q V+ V++ + +L M SKP P +I++VG+ G G Sbjct: 62 GEEVFGSLNPAQTVIKIVNDELTALLGGTQSRIMISSKP--------PTIIMLVGLQGAG 113 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALA 182 KTT GKL+ + G ML A D +R AAI QL++ + E G++ + Sbjct: 114 KTTTAGKLAVYLRKQGKHPMLVAADVYRPAAITQLQVVGKQIDIPVFADETPGANPVDIV 173 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 A +Q+ DV+IIDTAGRL + +LM + + ++ PH +L V+D+ G Sbjct: 174 RRAVEQSTHMLKDVVIIDTAGRLAIDEVLMDELSNIKAAVR------PHEILLVVDSMIG 227 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 Q+A+ + F+ G G+I+TK+DG ARGG + I +P+ F GV E ++ + F Sbjct: 228 QDAVTTAQTFNEKLGVDGVILTKLDGDARGGAALSIKAVTGLPIKFTGVSEKMDGFDVFY 287 Query: 303 AKDFSAVITGCLDYGEEK 320 ++ I LD G+ K Sbjct: 288 PDRMASRI---LDLGDFK 302 >gi|229047532|ref|ZP_04193122.1| Signal recognition particle protein [Bacillus cereus AH676] gi|229081100|ref|ZP_04213610.1| Signal recognition particle protein [Bacillus cereus Rock4-2] gi|229146416|ref|ZP_04274787.1| Signal recognition particle protein [Bacillus cereus BDRD-ST24] gi|229192014|ref|ZP_04318984.1| Signal recognition particle protein [Bacillus cereus ATCC 10876] gi|228591565|gb|EEK49414.1| Signal recognition particle protein [Bacillus cereus ATCC 10876] gi|228637049|gb|EEK93508.1| Signal recognition particle protein [Bacillus cereus BDRD-ST24] gi|228702144|gb|EEL54620.1| Signal recognition particle protein [Bacillus cereus Rock4-2] gi|228723779|gb|EEL75134.1| Signal recognition particle protein [Bacillus cereus AH676] Length = 436 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K ML A D +R AAI QL+ + D Sbjct: 88 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 145 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ D ++IDTAGRLH + LM + K+ V K Sbjct: 146 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK---- 201 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+DA TGQ+A+ + FH G TG+++TK+DG RGG + I P+ Sbjct: 202 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 259 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ +E F + ++ I G D Sbjct: 260 FAGMGEKLDAIEAFHPERMASRILGMGD 287 >gi|311746104|ref|ZP_07719889.1| signal recognition particle protein [Algoriphagus sp. PR1] gi|126576323|gb|EAZ80601.1| signal recognition particle protein [Algoriphagus sp. PR1] Length = 444 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 81/273 (29%), Positives = 136/273 (49%), Gaps = 11/273 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKP 102 +E+ LI +D+ VA+++ +++ + +DV S ++L +++ LM +K Sbjct: 32 KEIRRALIDADVNYKVAKEVTDKIKQEALGRDVLISVSPGQLLVKITQEELTKLMGGTK- 90 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 + S P V+L+ G+ G GKTT GKL+ + G +V+L A D +R AAIDQLK+ Sbjct: 91 VEINLSGDPSVVLISGLQGSGKTTFSGKLASLLKKQGRQVLLVACDIYRPAAIDQLKVLG 150 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 ++ + +A +A A A+ +I+DTAGRL + +M I + + L Sbjct: 151 EQVGVEVYAEPENKNALEIANNAIAYAKKSGKKTVIVDTAGRLAVDEQMMQEIEALKKAL 210 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 P L V+D+ TGQ+A+ + F G+++TK+DG RGG I I Sbjct: 211 N------PSETLFVVDSMTGQDAVNTAKTFDERLDFNGVVLTKLDGDTRGGAAISIRHVV 264 Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+ GE + +++ F S I G D Sbjct: 265 NKPIKFISTGEKMENIDVFHPDRMSQRILGMGD 297 >gi|114048412|ref|YP_738962.1| signal recognition particle protein [Shewanella sp. MR-7] gi|113889854|gb|ABI43905.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella sp. MR-7] Length = 457 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 156/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIV----EELLT 72 F + + +L + +I RL ++ V+E L ++ L+ +D+ + V ++ V E + Sbjct: 2 FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 61 Query: 73 KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + AK +S Q + V + K + ++ + + P V+++ G+ G GKTT + KL Sbjct: 62 QEVAKSLSPGQAFIKIVQSELEKSMGEANQALDL-ATQPPAVVMMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + K V++ + D +R AAI QL+ A +F S++ +A A A+ Sbjct: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLATEVDVEFFPSDVSQKPIDIAKAAIAYAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K +DV+I+DTAGRLH + +M I + +K P L V+DA TGQ+A + Sbjct: 181 LKFIDVVILDTAGRLHVDEAMMDEIKALHAAVK------PIETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|113971174|ref|YP_734967.1| signal recognition particle protein [Shewanella sp. MR-4] gi|117921457|ref|YP_870649.1| signal recognition particle protein [Shewanella sp. ANA-3] gi|113885858|gb|ABI39910.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella sp. MR-4] gi|117613789|gb|ABK49243.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella sp. ANA-3] Length = 457 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 156/305 (51%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIV----EELLT 72 F + + +L + +I RL ++ V+E L ++ L+ +D+ + V ++ V E + Sbjct: 2 FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 61 Query: 73 KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + AK +S Q + V + K + ++ + + P V+++ G+ G GKTT + KL Sbjct: 62 QEVAKSLSPGQAFIKIVQSELEKSMGEANQALDL-ATQPPAVVMMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + K V++ + D +R AAI QL+ A +F S++ +A A A+ Sbjct: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLATEVDVEFFPSDVSQKPIDIAKAAIAHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K +DV+I+DTAGRLH + +M I + +K P L V+DA TGQ+A + Sbjct: 181 LKFIDVVILDTAGRLHVDEAMMDEIKALHAAVK------PIETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|306829387|ref|ZP_07462577.1| signal recognition particle protein [Streptococcus mitis ATCC 6249] gi|304428473|gb|EFM31563.1| signal recognition particle protein [Streptococcus mitis ATCC 6249] Length = 523 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QAQA D ++IDTAGRL + +LM +R +K L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQANHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVIDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|166031990|ref|ZP_02234819.1| hypothetical protein DORFOR_01692 [Dorea formicigenerans ATCC 27755] gi|166028443|gb|EDR47200.1| hypothetical protein DORFOR_01692 [Dorea formicigenerans ATCC 27755] Length = 452 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 87/304 (28%), Positives = 150/304 (49%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S + KL+ ++ S RL + V+E L+++ L+ +D+ V + ++ + + Sbjct: 3 FDSLTEKLQNVFKNLRSKGRLTEADVQEALKEIKRALLAADVNFKVVKDFIKTVQERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + ++ + VI++ G+ G GKTT KL Sbjct: 63 QDVMNGLNPGQMVIKIVNEELCNLMGSETTEIKLQPGSAITVIMMAGLQGAGKTTTTAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K G K +L A D +R AAI QL+I ++ + A +A A + AQ Sbjct: 123 AGKFKLKGKKPLLVACDVYRPAAIKQLQINGEKQGVEVFTMGDNHKPANIAKAAIEHAQK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +++I+DTAGRLH + +MA + ++ + H + V+DA TGQ+A+ + Sbjct: 183 NGNNLVILDTAGRLHIDEDMMAELEEIKNTV------TVHQTILVIDAMTGQDAVNVAKE 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F G G+I+TK+DG RGG + + P+ ++G+GE ++DLE F + I Sbjct: 237 FDEKIGVDGVIVTKLDGDTRGGAALSVKAVTGKPILYVGMGEKLSDLEQFYPDRMANRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|83951198|ref|ZP_00959931.1| signal recognition particle protein [Roseovarius nubinhibens ISM] gi|83839097|gb|EAP78393.1| signal recognition particle protein [Roseovarius nubinhibens ISM] Length = 503 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/269 (30%), Positives = 135/269 (50%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA+ + + + + V+ Q+V+ V + + + L P Sbjct: 38 LLEADVSLPVARDFIARVQDQATGQSVTKSVTPGQQVVKIVHDALVETLRGEGDPGALKI 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P IL+VG+ G GKTT KL+K++ + G +V++A+ D R AA++QL+I + Sbjct: 98 DNPPAPILMVGLQGSGKTTTTAKLAKRLKERDGKRVLMASLDVNRPAAMEQLQILGQQIG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G D A+A A QA DV ++DTAGRLH ++ L+ + D Sbjct: 158 VDTLPIVKGEDPVAIAKRAKTQASLGGYDVYMLDTAGRLHIDAELIQQAADV------RD 211 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+D TGQ+A+ F G TG+++T+MDG RGG + + P+ Sbjct: 212 VANPRETLLVVDGLTGQDAVNVATEFDDKIGVTGVVLTRMDGDGRGGAALSMRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ LE F + I G D Sbjct: 272 RFVGLGEKMDALETFEPDRIAGRILGMGD 300 >gi|323484786|ref|ZP_08090143.1| hypothetical protein HMPREF9474_01894 [Clostridium symbiosum WAL-14163] gi|323691859|ref|ZP_08106113.1| signal recognition particle protein [Clostridium symbiosum WAL-14673] gi|323401892|gb|EGA94233.1| hypothetical protein HMPREF9474_01894 [Clostridium symbiosum WAL-14163] gi|323504066|gb|EGB19874.1| signal recognition particle protein [Clostridium symbiosum WAL-14673] Length = 454 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 87/304 (28%), Positives = 152/304 (50%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S + KL+ ++ RL + V+ L+++ L+ +D+ V ++ + + + Sbjct: 3 FESLADKLQNVFKNLTGKGRLSEADVKAGLKEVKMALLEADVSFKVVKQFINSVQEQAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 DV Q V+ V++ + K++ S+ VI++ G+ G GKTT K+ Sbjct: 63 TDVLNGLHPGQMVIKIVNDELVKLMGSEMTEIALKPSNEITVIMMAGLQGAGKTTTTAKI 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K+ G +LAA D +R AA++QL+ ++ G +A A + A Sbjct: 123 AGKLKAKGRNPLLAACDVYRPAAVEQLQKNGEKQGVPVFSMGTGHKPVNIAKAAIEHASK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +V+IIDTAGRLH + +M +++ + + +D + L V+DA TGQ+A+ M Sbjct: 183 NGHNVVIIDTAGRLHIDEDMM---NELVEIKENVDVY---QTLLVVDAMTGQDAVNVAGM 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G G+I+TKMDG RGG + I P+ ++G+GE ++DLE F ++ I Sbjct: 237 FNDKIGIDGVILTKMDGDTRGGAALSIKAVTGKPIIYVGMGEKLSDLEQFYPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|291403728|ref|XP_002718183.1| PREDICTED: signal recognition particle 54kDa isoform 1 [Oryctolagus cuniculus] Length = 504 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E ++ + + +++I+DT+GR L +M++V + P Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D EPF + F + + G D Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299 >gi|291515775|emb|CBK64985.1| signal recognition particle subunit FFH/SRP54 (srp54) [Alistipes shahii WAL 8301] Length = 443 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/273 (31%), Positives = 135/273 (49%), Gaps = 10/273 (3%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNW 105 +E+ LI +D+ VA+ +E+ K +DV + +++++ L L Sbjct: 32 KEIRRALIDADVNYKVAKTFTDEVKQKALGQDVLKAVKPGQMMTKIVRDELAELMGGTAT 91 Query: 106 D--FSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWA 162 D P VIL+ G+ G GKTT GKL+ + S G +V+L AGD +R AAIDQLK+ Sbjct: 92 DIRLEGTPAVILIAGLQGSGKTTFSGKLASLLKSKKGRQVLLVAGDVYRPAAIDQLKVLG 151 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 + + E + +A K A+ K +V+I+DTAGRL + +M I + + Sbjct: 152 GQIGVEVYTEEGNRNPVEIAENGIKYARQKNYNVVIVDTAGRLAVDEAMMQEITAIKAAV 211 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 K P L V+DA TGQ+A+ F+ G+++TK+DG RGG I I Sbjct: 212 K------PSETLFVVDAMTGQDAVNTAREFNERLDFDGVVLTKLDGDTRGGAAISIRSVV 265 Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+ GE ++ L+ F + + I G D Sbjct: 266 NKPLKFISSGEKMDALQVFHPERMADRILGMGD 298 >gi|228966791|ref|ZP_04127835.1| Signal recognition particle protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228792890|gb|EEM40448.1| Signal recognition particle protein [Bacillus thuringiensis serovar sotto str. T04001] Length = 360 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K ML A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ D ++IDTAGRLH + LM + K+ V K Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+DA TGQ+A+ + FH G TG+++TK+DG RGG + I P+ Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ +E F + ++ I G D Sbjct: 273 FAGMGEKLDAIEAFHPERMASRILGMGD 300 >gi|152991963|ref|YP_001357684.1| signal recognition particle protein [Sulfurovum sp. NBC37-1] gi|151423824|dbj|BAF71327.1| signal recognition particle protein [Sulfurovum sp. NBC37-1] Length = 452 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/272 (30%), Positives = 142/272 (52%), Gaps = 13/272 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIVE--ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 EL+ L+++D+ V + ++ EL TK+ V L + + + +L P + Sbjct: 31 ELKKSLLKADVHHKVVKDLISSVELETKKNG--VGKDNFLKALQDKLTDILTIEGAPKGF 88 Query: 106 DFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWAD 163 F+ +P V+L++G+ G GKTT GKL+ + + K V++ A D R AA++QL+ Sbjct: 89 TFASKPPTVVLMIGLQGSGKTTTTGKLAYFLKEQKKKKVLVVAADLQRLAAVEQLRQITS 148 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + D V E + + A K+A+ + DV++IDTAGRL + LM + ++ +V Sbjct: 149 QIDVDLVADE-NATPTEIVKRALKKAEDELYDVVLIDTAGRLAIDDELMDELAEVKKVAN 207 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 P + V DA TGQ+A+R + F G TG+I+TK DG ++GG + + Sbjct: 208 ------PDELFYVADAMTGQDAVRTAQTFKDKIGITGVILTKFDGDSKGGVALGLTQQVG 261 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P+ F+G GE + DLE F+ + + G D Sbjct: 262 VPLRFIGAGEKMPDLEQFIPDRIVSRLMGAGD 293 >gi|104774249|ref|YP_619229.1| Signal recognition particle protein Ffh [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514339|ref|YP_813245.1| Signal recognition particle GTPase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423330|emb|CAI98173.1| Signal recognition particle protein Ffh [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093654|gb|ABJ58807.1| signal recognition particle subunit FFH/SRP54 (srp54) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 476 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 103/321 (32%), Positives = 160/321 (49%), Gaps = 32/321 (9%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A E+LS +L K + + K K DI ++ R E+ L+ +D+ V + Sbjct: 1 MAFENLS--ERLQKALRNLTGKGKISEEDINAASR-------EIRLALLEADVNFKVVKD 51 Query: 66 IVEELLTKRYAKDVSV-----QRVLYDVSELIHKML----MPLSKPFNWDFSHRPHVILV 116 ++ + + ++V Q+V+ V+E + KM+ + L+K H P VI++ Sbjct: 52 FIKTIKKRALGQEVQESLTPGQQVIKIVNEELTKMMGEEAVGLTKS-----PHIPTVIMM 106 Query: 117 VGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLK-IWADRTSADFVCSEI 174 VG+ G GKTT +GKL+ + M + + L AGD +R AAIDQLK I AD + E Sbjct: 107 VGLQGTGKTTTVGKLAYRLMKEEKARPFLIAGDIYRPAAIDQLKQIGADLKVPVYSDPEE 166 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 S A + + +A + D +IIDTAGRL + LM + ++ V P ++L Sbjct: 167 KS-VAKIVEDGLAEAAVHRNDYVIIDTAGRLEIDEPLMKELEEVKAV------SQPDNIL 219 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DA TGQ A + F+ TG+I+TK+DG RGG + I P+ F G GE Sbjct: 220 LVVDAMTGQVAADVAKTFNERLDVTGVILTKLDGDTRGGAALSIRAITGKPILFTGQGEK 279 Query: 295 INDLEPFVAKDFSAVITGCLD 315 + DLE F ++ I G D Sbjct: 280 LTDLEVFHPDRMASRILGMGD 300 >gi|294339024|emb|CAZ87371.1| Signal recognition particle protein (Fifty-four homolog) (p48) [Thiomonas sp. 3As] Length = 449 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 94/321 (29%), Positives = 151/321 (47%), Gaps = 40/321 (12%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 ++ LS + K KG A + + I D++ RL L+ +D+ + V ++ Sbjct: 6 TQRLSRVVKTLKGEARIT---ESNIQDMLREVRL----------ALLEADVALPVVREFT 52 Query: 68 EELLTKRYAKDVS------------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115 + K +DV VQR L D ++ + P N + P ++L Sbjct: 53 ARVKEKALGQDVVGSLTPGQALVGVVQRELAD-------LMGGDAVPINL-ATQPPAIVL 104 Query: 116 VVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 + G+ G GKTT KL++ +++ KV+ + D +R AAI QL+ + A+F S Sbjct: 105 MAGLQGAGKTTTTAKLARLLTERQKKKVLTVSCDVYRPAAIAQLQTVTAQAGAEFFPSSP 164 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 +A A + A++ DVL++DTAGRL + +M I ++ LK P L Sbjct: 165 DDKPLDIARRAVEFARSHHFDVLLVDTAGRLSVDEAMMREIKELHGALK------PIETL 218 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DA GQ+A+ FH TG+++TK+DG ARGG + + P+ F GV E Sbjct: 219 FVVDAMQGQDAVNTARAFHDTLPLTGIVLTKLDGDARGGAALSVRQVTGAPIKFAGVSEK 278 Query: 295 INDLEPFVAKDFSAVITGCLD 315 I+ LEPF + + I G D Sbjct: 279 IDGLEPFDPRRMADRILGMGD 299 >gi|315613041|ref|ZP_07887952.1| signal recognition particle protein [Streptococcus sanguinis ATCC 49296] gi|315315151|gb|EFU63192.1| signal recognition particle protein [Streptococcus sanguinis ATCC 49296] Length = 523 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 107/206 (51%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 A + + +QAQA D ++IDTAGRL + +LM +R +K L Sbjct: 161 FALGTKVPAVEIVRQGLEQAQANHNDYVLIDTAGRLQIDELLM----NELRDVKAL--AQ 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ F Sbjct: 215 PNEILLVIDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFT 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I D+E F S+ I G D Sbjct: 275 GTGEKITDIETFHPDRMSSRILGMGD 300 >gi|291059955|gb|ADD72690.1| signal recognition particle-docking protein FtsY [Treponema pallidum subsp. pallidum str. Chicago] Length = 293 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 92/272 (33%), Positives = 145/272 (53%), Gaps = 13/272 (4%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ---RVLY-DVSELIHKML 96 LD+ LE+LLI D+ ++ A+ +L + V + R L+ ++ E ++ Sbjct: 20 LDETFFSALEELLIEGDLSLSTAESFCTQLRNAARTRSVHTEDALRTLFAEIMESCVRVT 79 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAI 155 P ++ + L++GVNG GKTT KL+ + ++ AA DTFR+AA Sbjct: 80 HLAPNP------NQCSLYLLLGVNGSGKTTSAAKLAAYYQTQKVHPILFAAADTFRAAAA 133 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 +QL + + G D AA+ ++A + +A+K +L++DTAGRLHN + L+A + Sbjct: 134 EQLAHHGAQLGVRVIAHPGGKDPAAVVFDAGEALRAQKRGLLLVDTAGRLHNKTHLIAEL 193 Query: 216 GKMIRVLK-RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 K+ R+ + ++ A +L VLDATTGQNA RQ + FH G L++ K D ARGG Sbjct: 194 QKIDRIAQTKVSADAYRKIL-VLDATTGQNAFRQAQTFHEAIGVDALLLAKCDTRARGGA 252 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + I+ IP+ FLG GE DL A++F Sbjct: 253 VFSIMQELGIPLAFLGWGERYTDLVEANAREF 284 >gi|258406146|ref|YP_003198888.1| signal recognition particle protein [Desulfohalobium retbaense DSM 5692] gi|257798373|gb|ACV69310.1| signal recognition particle protein [Desulfohalobium retbaense DSM 5692] Length = 493 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/205 (34%), Positives = 107/205 (52%), Gaps = 6/205 (2%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VI++VG+ G GKTT KL+ ++ +L D +R AAIDQL A Sbjct: 100 PRVIMLVGLQGSGKTTSSAKLALQLRRDNHAPLLVPADVYRPAAIDQLHRLASEIDIPAY 159 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 S + + +A ++A+ D +++DTAGRLH + LM + ++ V AP Sbjct: 160 PSTSEMNPVDICRDALEKARENGQDTVLLDTAGRLHVDEKLMDELARIKEVC------AP 213 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 +L V DA TGQ+A+ E F + TG+++TKM+G ARGG + I P+ ++G Sbjct: 214 SEILLVADAMTGQDAVNVAERFDELLDLTGVVLTKMEGDARGGAALSIKSITGKPIKYMG 273 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 VGE + D+E F ++ I G D Sbjct: 274 VGEKLKDIEAFYPDRVASRILGMGD 298 >gi|255534965|ref|YP_003095336.1| Signal recognition particle, subunit Ffh SRP54 [Flavobacteriaceae bacterium 3519-10] gi|255341161|gb|ACU07274.1| Signal recognition particle, subunit Ffh SRP54 [Flavobacteriaceae bacterium 3519-10] Length = 455 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 87/278 (31%), Positives = 140/278 (50%), Gaps = 20/278 (7%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKMLMPLS 100 +E+ L+ +D+ VA+ LTKR Q VL +S +++H L+ L Sbjct: 32 KEIRRALVDADVNYKVAKD-----LTKRVQDKALGQNVLTSLSPGQLMTKIVHDELVDLM 86 Query: 101 KPFNW--DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQ 157 + + S +P VIL+ G+ G GKTT GKL+ + + K +L A D +R AAI+Q Sbjct: 87 GKTHEGINLSGKPSVILIAGLQGSGKTTFSGKLANYLKEKRNKKPLLVACDVYRPAAIEQ 146 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 LKI +T E + +++A A K A+ DV+I+DTAGRL + +M I Sbjct: 147 LKILGQQTGIPVYTEEGALNPSSIAENAVKFAKENNHDVVIVDTAGRLAIDEQMMNEIKS 206 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + +K P+ L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + Sbjct: 207 VHYFIK------PNETLFVVDSMTGQDAVNTAKAFNEALNFDGVVLTKLDGDTRGGAALT 260 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I + P+ F+ GE + L+ F + + I G D Sbjct: 261 IRSVVEKPIKFISTGEKMEALDVFYPERMADRILGMGD 298 >gi|83855061|ref|ZP_00948591.1| signal recognition particle protein [Sulfitobacter sp. NAS-14.1] gi|83842904|gb|EAP82071.1| signal recognition particle protein [Sulfitobacter sp. NAS-14.1] Length = 502 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 138/269 (51%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA+ V+ + K + V+ Q+V+ V + + L +P Sbjct: 38 LLEADVSLPVARDFVKAVQDKATGQAVTKSITPGQQVVKIVHDALIDTLKGEGEPGALKI 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P IL+VG+ G GKTT KL+K++ D G +V++A+ D R AA++QL I + Sbjct: 98 DSPPAPILMVGLQGSGKTTTTAKLAKRLKDRDGKRVLMASLDVNRPAAMEQLAILGVQIG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G + +A A QA DV ++DTAGRL + LM + + +R D Sbjct: 158 VDTLPIVKGENPVQIAKRAKTQASMGGYDVYMLDTAGRLSIDEELMRQV-EAVR-----D 211 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+D TGQ+A++ E F+ G +G+++T+MDG RGG + + P+ Sbjct: 212 VANPRETLLVVDGLTGQDAVQTAENFNDRIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ LE F + + I G D Sbjct: 272 KFVGLGEKMDALETFEPERIAGRILGMGD 300 >gi|307199091|gb|EFN79801.1| Signal recognition particle 54 kDa protein [Harpegnathos saltator] Length = 506 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 106/206 (51%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 RP+VI+ VG+ G GKTT KL+ K L DTFR+ A DQ+K A + F Sbjct: 100 RPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQIKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A + + + +++I+DT+GR L +M++V + P Sbjct: 160 YGSYTEVDPVTIAQDGVDMFKKEGYEIIIVDTSGRHKQEESLFE---EMLQVANAVQPD- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DAT GQ Q + F +I+TK+DG A+GGG + V + PV F+ Sbjct: 216 --NIIFVMDATIGQACEAQAKAFKERVNVGSIIITKLDGHAKGGGALSAVAATQSPVIFV 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+DLEPF K F + + G D Sbjct: 274 GTGEHIDDLEPFKTKPFISKLLGMGD 299 >gi|322374427|ref|ZP_08048941.1| signal recognition particle protein [Streptococcus sp. C300] gi|331266505|ref|YP_004326135.1| signal recognition particle protein [Streptococcus oralis Uo5] gi|321279927|gb|EFX56966.1| signal recognition particle protein [Streptococcus sp. C300] gi|326683177|emb|CBZ00795.1| signal recognition particle protein [Streptococcus oralis Uo5] Length = 523 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QAQA D ++IDTAGRL + +LM +R +K L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQANHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVIDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|227503356|ref|ZP_03933405.1| signal recognition particle protein [Corynebacterium accolens ATCC 49725] gi|306836401|ref|ZP_07469379.1| signal recognition particle protein [Corynebacterium accolens ATCC 49726] gi|227075859|gb|EEI13822.1| signal recognition particle protein [Corynebacterium accolens ATCC 49725] gi|304567761|gb|EFM43348.1| signal recognition particle protein [Corynebacterium accolens ATCC 49726] Length = 546 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 89/282 (31%), Positives = 144/282 (51%), Gaps = 26/282 (9%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + V + ++ + + +VS Q+V+ V+E + ++L ++ N Sbjct: 38 LLEADVSLTVVRGFIKRIKERARGAEVSEALNPAQQVVKIVNEELIEILGGETRRLNL-A 96 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164 + P VI++ G+ G GKTT+ GKL+K ++ G ML A D R A+ QL+I +R Sbjct: 97 KNPPTVIMLAGLQGAGKTTLAGKLAKHLTKQGHTPMLVACDLQRPGAVQQLQIVGERAEV 156 Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 TS D E+G+ D +A +A+ K+ DV+IIDTAGRL + LM Sbjct: 157 PTFAPDPGTSLDSNDHEMGTSHGDPVDVAKRGIAEAKQKQHDVVIIDTAGRLGIDETLMT 216 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + IR D P VL V+D+ GQ+A++ E F TG+++TK+DG ARGG Sbjct: 217 Q-ARNIR-----DAVNPDEVLFVIDSMIGQDAVQTAEAFRDGVDFTGVVLTKLDGDARGG 270 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ + GE ++D + F + S+ I G D Sbjct: 271 AALSIREVTGKPILYASTGEKLDDFDVFHPERMSSRILGMGD 312 >gi|313205775|ref|YP_004044952.1| signal recognition particle subunit ffh/srp54 (srp54) [Riemerella anatipestifer DSM 15868] gi|312445091|gb|ADQ81446.1| signal recognition particle subunit FFH/SRP54 (srp54) [Riemerella anatipestifer DSM 15868] gi|315022827|gb|EFT35851.1| signal recognition particle protein [Riemerella anatipestifer RA-YM] gi|325336784|gb|ADZ13058.1| Ffh [Riemerella anatipestifer RA-GD] Length = 454 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 87/278 (31%), Positives = 137/278 (49%), Gaps = 20/278 (7%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKMLMPL- 99 +E+ L+ +D+ VA+ LTKR + Q VL ++ +++H L+ L Sbjct: 32 KEIRRALVDADVNYKVAKD-----LTKRVQEKALGQNVLTSLTPGQLMTKIVHDELVELM 86 Query: 100 -SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQ 157 + S +P VIL+ G+ G GKTT GKL+ + K +L A D +R AAIDQ Sbjct: 87 GGSQEGINLSGKPTVILIAGLQGSGKTTFSGKLANYLKKKRAKNPLLVACDVYRPAAIDQ 146 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 LK+ +T E + + +A A A+A K DV+I+DTAGRL + +M I Sbjct: 147 LKVLGSQTGIPVYTEEENKNPSTIAENAVNFAKANKHDVVIVDTAGRLAIDEQMMNEIKS 206 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + +K P L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + Sbjct: 207 VHYFIK------PTETLFVVDSMTGQDAVNTAKAFNDALNFDGVVLTKLDGDTRGGAALT 260 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I P+ F+ GE + L+ F + + I G D Sbjct: 261 IRSVVNKPIKFISTGEKMEALDLFYPERMADRILGMGD 298 >gi|227513457|ref|ZP_03943506.1| signal recognition particle protein Ffh [Lactobacillus buchneri ATCC 11577] gi|227524600|ref|ZP_03954649.1| signal recognition particle protein Ffh [Lactobacillus hilgardii ATCC 8290] gi|227083330|gb|EEI18642.1| signal recognition particle protein Ffh [Lactobacillus buchneri ATCC 11577] gi|227088275|gb|EEI23587.1| signal recognition particle protein Ffh [Lactobacillus hilgardii ATCC 8290] Length = 478 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 125/237 (52%), Gaps = 12/237 (5%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGL 140 Q+++ V E + K + + P N P VI++ G+ G GKTT +GKL+ K+ ++ Sbjct: 73 QQIVKIVDEELTKTMGQEAVPLNKS-EKIPTVIMMSGLQGAGKTTTVGKLALKLKNEQNA 131 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLI 198 + +L A D +R AAI+QL+ + D ++G+D +A ++A+ D +I Sbjct: 132 RPLLIADDVYRPAAIEQLQTVGQQ--VDVPVFQLGTDVDPVEIAKRGLEKAKEDHNDYVI 189 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 IDTAGRL + LM +G + + + P +L V+DA TGQNA+ E F Sbjct: 190 IDTAGRLQIDEKLMDELGNIKKAVN------PDEILLVIDAMTGQNAVATAEGFDKTLDV 243 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TG+++TK+DG RGG + I P+ F+G GE + DL+ F ++ I G D Sbjct: 244 TGVVLTKLDGDTRGGAALSIRAVTGKPIKFVGQGEKMEDLDVFHPDRMASRILGMGD 300 >gi|317129234|ref|YP_004095516.1| signal recognition particle protein [Bacillus cellulosilyticus DSM 2522] gi|315474182|gb|ADU30785.1| signal recognition particle protein [Bacillus cellulosilyticus DSM 2522] Length = 449 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/211 (35%), Positives = 115/211 (54%), Gaps = 11/211 (5%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 S P V+++VG+ G GKTT GKL+ + K ++ A D +R AAI QL+ + Sbjct: 98 SKPPTVVMMVGLQGAGKTTTTGKLANHLRKKHNRKPLMVAADIYRPAAIKQLETLGKQL- 156 Query: 167 ADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 D +G + +A A ++A+ + D ++IDTAGRLH + LM + + I+ L Sbjct: 157 -DMPVFSMGDQVSPVEIAKNAMEKAKEEHHDYVLIDTAGRLHVDEELMGELEE-IKALT- 213 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 +P +L V+DA TGQ+A+ E F+ G TG+++TK+DG RGG + I Sbjct: 214 ----SPDEILLVVDAMTGQDAVNVAESFNERLGITGVVLTKLDGDTRGGAALSIRSVTDT 269 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F G+GE ++ LEPF ++ I G D Sbjct: 270 PIKFAGMGEKVDALEPFHPDRMASRILGMGD 300 >gi|291403730|ref|XP_002718184.1| PREDICTED: signal recognition particle 54kDa isoform 2 [Oryctolagus cuniculus] Length = 455 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 51 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 110 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E ++ + + +++I+DT+GR L +M++V + P Sbjct: 111 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 166 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 167 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 224 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D EPF + F + + G D Sbjct: 225 GTGEHIDDFEPFKTQPFISKLLGMGD 250 >gi|197631999|gb|ACH70723.1| signal recognition particle 54 [Salmo salar] gi|209154348|gb|ACI33406.1| Signal recognition particle 54 kDa protein [Salmo salar] Length = 504 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 100 KNNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E ++ + + +++I+DT+GR L +M++V + P Sbjct: 160 YGSYTEMDPVVIAAEGVEKFKNESFEIIIVDTSGRHKQEDSLFE---EMLQVSNAVQPD- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVEVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+DLEPF + F + + G D Sbjct: 274 GTGEHIDDLEPFKTQPFISKLLGMGD 299 >gi|41055859|ref|NP_957282.1| signal recognition particle 54 kDa protein [Danio rerio] gi|28277732|gb|AAH45474.1| Signal recognition particle 54 [Danio rerio] gi|45709065|gb|AAH67588.1| Signal recognition particle 54 [Danio rerio] gi|182891276|gb|AAI64217.1| Srp54 protein [Danio rerio] Length = 504 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 108/206 (52%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 100 KNNVIMFVGLQGSGKTTTCSKLAYYFQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E ++ +++ +++I+DT+GR L +M++V + P Sbjct: 160 YGSYTEMDPVIIAAEGVEKFKSENFEIIIVDTSGRHKQEDSLFE---EMLQVSNAVQPD- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D EPF + F + + G D Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299 >gi|222097290|ref|YP_002531347.1| signal recognition particle protein [Bacillus cereus Q1] gi|221241348|gb|ACM14058.1| signal recognition particle protein [Bacillus cereus Q1] Length = 449 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K ML A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ D ++IDTAGRLH + LM + ++ V K Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAQVKEVAK---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+DA TGQ+A+ + FH G TG+++TK+DG RGG + I P+ Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ LE F + ++ I G D Sbjct: 273 FAGMGEKLDALEAFHPERMASRILGMGD 300 >gi|255946073|ref|XP_002563804.1| Pc20g13240 [Penicillium chrysogenum Wisconsin 54-1255] gi|211588539|emb|CAP86653.1| Pc20g13240 [Penicillium chrysogenum Wisconsin 54-1255] Length = 646 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 88/282 (31%), Positives = 137/282 (48%), Gaps = 38/282 (13%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101 +ED L++ ++ A ++ E E++ K+ S L+ E + K+L P S Sbjct: 357 MEDHLLKKNVAREAAVRLCEGVKREMIGKKTGNFQSTDAALHVAMESSLRKILTPTSSLD 416 Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 P + RP+V+ +VGVNGVGK+T + K+ + +V++AA DTFR Sbjct: 417 LLREINAVVAPTTKQQAPRPYVMSIVGVNGVGKSTNLSKICYFLLQNKYRVLIAACDTFR 476 Query: 152 SAAIDQLKIWADRTS----------ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 S A++QL++ ADR + G DAA +A +A A A K DV++IDT Sbjct: 477 SGAVEQLRVHADRLKELSVRENAGDVEIYQKGYGKDAANVAKDAVDYAAANKFDVVLIDT 536 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT--- 258 AGR HN+ LM+ + K + P + V +A G +++ Q F+ GT Sbjct: 537 AGRRHNDQRLMSSLEKFAKFAN------PDKIFMVGEALVGTDSVMQARNFNQAFGTGRN 590 Query: 259 -TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G I++K D G L+ +V IP+ FLGVG+ DL Sbjct: 591 LDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 632 >gi|313124065|ref|YP_004034324.1| signal recognition particle subunit ffh/srp54 (srp54) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280628|gb|ADQ61347.1| Signal recognition particle subunit FFH/SRP54 (Srp54) [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 476 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 102/321 (31%), Positives = 161/321 (50%), Gaps = 32/321 (9%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A E+LS +L K + + K K DI ++ R E+ L+ +D+ V + Sbjct: 1 MAFENLS--ERLQKALRNLTGKGKISEEDINAASR-------EIRLALLEADVNFKVVKD 51 Query: 66 IVEELLTKRYAKDVSV-----QRVLYDVSELIHKML----MPLSKPFNWDFSHRPHVILV 116 ++ + + ++V Q+V+ V+E + KM+ + L+K H P VI++ Sbjct: 52 FIKTIKKRALGQEVQESLTPGQQVIKIVNEELTKMMGEEAVGLTKS-----PHIPTVIMM 106 Query: 117 VGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQL-KIWADRTSADFVCSEI 174 VG+ G GKTT +GKL+ + M + + L AGD +R AAIDQL +I AD + E Sbjct: 107 VGLQGTGKTTTVGKLAYRLMKEEKARPFLIAGDIYRPAAIDQLEQIGADLKVPVYSDPEE 166 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 S A + + +A + D +IIDTAGRL + LM + ++ V + P ++L Sbjct: 167 KS-VAKIVEDGLAEAAVHRNDYVIIDTAGRLEIDEPLMKELEEVKAVTQ------PDNIL 219 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DA TGQ A + F+ TG+I+TK+DG RGG + I P+ F G GE Sbjct: 220 LVVDAMTGQAAADVAKTFNERLDVTGVILTKLDGDTRGGAALSIRAITGKPILFTGQGEK 279 Query: 295 INDLEPFVAKDFSAVITGCLD 315 + DLE F ++ I G D Sbjct: 280 LTDLEVFHPDRMASRILGMGD 300 >gi|312869933|ref|ZP_07730072.1| signal recognition particle protein [Lactobacillus oris PB013-T2-3] gi|311094518|gb|EFQ52823.1| signal recognition particle protein [Lactobacillus oris PB013-T2-3] Length = 480 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/280 (30%), Positives = 140/280 (50%), Gaps = 16/280 (5%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML 96 +RE + ++ L+ +D+ V + V+ + K +V Q+++ V++ + K++ Sbjct: 28 LRETMREIRLALLEADVNFTVVKDFVKTVREKAVGAEVLKGLNPAQQIVKIVNDELTKLM 87 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAI 155 + P N +H P VI++VG+ G GKTT GKL+ ++ + + M A D +R AAI Sbjct: 88 GEEAVPLNK-AAHIPTVIMMVGLQGAGKTTTAGKLALRLKNEDHARPMFIAADVYRPAAI 146 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 QL+ AD+ D + E + A+ D +IIDTAGRL + LM + Sbjct: 147 TQLQQVADQIDVPVFEKGTDVDPVEIVREGMEVAKQNHNDYVIIDTAGRLQIDEQLMDEL 206 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 + ++ P +L V+D+ TGQNA+ + F TG+I+TK+DG RGG Sbjct: 207 ANIKELVN------PDEILLVIDSMTGQNAVNTAQGFDDKLDITGVILTKLDGDTRGGAA 260 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+G GE + DL+ F ++ I G D Sbjct: 261 MSIRAVTGKPIKFVGEGEKMADLDVFHPDRMASRILGMGD 300 >gi|227543207|ref|ZP_03973256.1| signal recognition particle protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227181016|gb|EEI61988.1| signal recognition particle protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 538 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 87/282 (30%), Positives = 146/282 (51%), Gaps = 26/282 (9%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + V + ++ + + +DVS Q+V+ V+E + ++L ++ Sbjct: 30 LLEADVSLPVVRGFIKRIKERAGGQDVSQALNPAQQVVKIVNEELIEILGGETRHLQM-A 88 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164 + P VI++ G+ G GKTT+ GKL+K ++ G ML A D R A+ QL+I +R Sbjct: 89 KNSPTVIMLAGLQGAGKTTLAGKLAKHLASQGHTPMLVACDLQRPGAVQQLQIVGERAGV 148 Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 T+ D E+G+ D +A + ++A+ ++ DV+I+DTAGRL + LM Sbjct: 149 PTFAPDPGTTLDTTEHEMGTSHGDPVLVAKQGIEEAKRQQRDVVIVDTAGRLGIDEELMR 208 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 IR D P VL V+DA GQ+A++ + F G TG+++TK+DG ARGG Sbjct: 209 QASN-IR-----DAVNPDEVLFVIDAMIGQDAVQTAQAFRDGVGFTGVVLTKLDGDARGG 262 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F GE ++D + F + ++ I G D Sbjct: 263 AALSIREVTGKPIMFASTGEKLDDFDVFHPERMASRILGMGD 304 >gi|297202642|ref|ZP_06920039.1| signal recognition particle protein [Streptomyces sviceus ATCC 29083] gi|197713217|gb|EDY57251.1| signal recognition particle protein [Streptomyces sviceus ATCC 29083] Length = 537 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/284 (30%), Positives = 143/284 (50%), Gaps = 18/284 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + ++ + + +VS QRVL V+E + +L Sbjct: 50 DATAREIRIALLEADVALPVVRAFIKNVKERALGPEVSGSQYPAQRVLDIVNEELVTILG 109 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + P VI++ G+ G GKTT+ GKL++ + + G +L A D R A+ Q Sbjct: 110 GQTRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLARHLKEEGHSPLLVAADLQRPNAVTQ 168 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R E G+ D +A ++ + A+AK D++I+DTAGRL + LM Sbjct: 169 LSVVAERAGVAVFAPEPGNGVGDPVKVAQDSVQHARAKLHDIVIVDTAGRLGIDQELMQQ 228 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P +L V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 229 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 282 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + I P+ F GE ++D + F ++ I LD G+ Sbjct: 283 ALSIASVTGKPIMFASNGEKLDDFDVFHPDRMASRI---LDMGD 323 >gi|116495084|ref|YP_806818.1| Signal recognition particle GTPase [Lactobacillus casei ATCC 334] gi|116105234|gb|ABJ70376.1| signal recognition particle subunit FFH/SRP54 (srp54) [Lactobacillus casei ATCC 334] Length = 478 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 96/316 (30%), Positives = 153/316 (48%), Gaps = 22/316 (6%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A E LS +L K F+ K K +DI + R E+ L+ +D+ V + Sbjct: 1 MAFEGLS--ERLQKAFSGLRRKGKVSESDIRDAMR-------EIRLALLEADVNFDVVKT 51 Query: 66 IVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 ++ + TK +V Q+++ V++ + K + + P N H P VI++ G+ Sbjct: 52 FIKNVRTKALGAEVLESLTPSQQIIKIVNDELVKTMGEAAVPLNK-APHIPTVIMMAGLQ 110 Query: 121 GVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 G GKTT +GKLSK M + + +L A D +R AAIDQL+ + + D Sbjct: 111 GAGKTTTVGKLSKYLMDNDSARPLLIAADVYRPAAIDQLQTIGKQLNVPVFEMGTDVDPV 170 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 + + A+ K D ++IDTAGRL + LM + K I+ L P+ +L V DA Sbjct: 171 EIVRQGLATAKENKNDYVLIDTAGRLQIDEKLMNEL-KNIKELAH-----PNDILLVDDA 224 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQ A+ + F+ TG+++TK+DG RGG + I P+ F+G GE ++ L+ Sbjct: 225 MTGQAAVDVAKGFNEQLDITGVVLTKLDGDTRGGAALSIRAVTGKPIKFIGQGEKMDALD 284 Query: 300 PFVAKDFSAVITGCLD 315 F + I G D Sbjct: 285 VFYPDRMANRILGMGD 300 >gi|83941584|ref|ZP_00954046.1| signal recognition particle protein [Sulfitobacter sp. EE-36] gi|83847404|gb|EAP85279.1| signal recognition particle protein [Sulfitobacter sp. EE-36] Length = 502 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 138/269 (51%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA+ V+ + K + V+ Q+V+ V + + L +P Sbjct: 38 LLEADVSLPVARDFVKAVQDKATGQAVTKSITPGQQVVKIVHDALIDTLKGEGEPGALKI 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P IL+VG+ G GKTT KL+K++ D G +V++A+ D R AA++QL I + Sbjct: 98 DSPPAPILMVGLQGSGKTTTTAKLAKRLKDRDGKRVLMASLDVNRPAAMEQLAILGVQIG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G + +A A QA DV ++DTAGRL + LM + + +R D Sbjct: 158 VDTLPIVKGENPVQIAKRAKTQASMGGYDVYMLDTAGRLSIDEELMRQV-EAVR-----D 211 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+D TGQ+A++ E F+ G +G+++T+MDG RGG + + P+ Sbjct: 212 VANPRETLLVVDGLTGQDAVQTAENFNDRIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ LE F + + I G D Sbjct: 272 KFVGLGEKMDALETFEPERIAGRILGMGD 300 >gi|322831429|ref|YP_004211456.1| signal recognition particle protein [Rahnella sp. Y9602] gi|321166630|gb|ADW72329.1| signal recognition particle protein [Rahnella sp. Y9602] Length = 453 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 99/309 (32%), Positives = 155/309 (50%), Gaps = 25/309 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + +I RL ++ ++E L ++ L+ +D+ + V + + + K A Sbjct: 2 FENLSDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFISRV--KESA 59 Query: 77 KDVSVQRVLYDVSE---LIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGK 130 V + L E ++ K L N + + P V+L+ G+ G GKTT +GK Sbjct: 60 VGHEVNKSLTPGQEFVKIVQKELETAMGEANTELNLAAQPPAVVLMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L+K + + K +L + D +R AAI QL+ A + DF S+ + A +QA Sbjct: 120 LAKFLKEKKKKKVLVVSADVYRPAAIKQLETLAQQVEVDFFPSDAQEKPVDIVSRALQQA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246 + K DVLI+DTAGRLH + +M I ++ HA P L V+DA TGQ+A Sbjct: 180 KLKFYDVLIVDTAGRLHVDEAMMDEIKQV---------HAAINPVETLFVVDAMTGQDAA 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ TG+I+TK+DG ARGG + I P+ FLG+GE + LEPF Sbjct: 231 NTAKAFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGMGEKTDALEPFHPDRI 290 Query: 307 SAVITGCLD 315 ++ I G D Sbjct: 291 ASRILGMGD 299 >gi|209153928|gb|ACI33196.1| Signal recognition particle 54 kDa protein [Salmo salar] Length = 504 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 100 KNNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E ++ + + +++I+DT+GR L +M++V + P Sbjct: 160 YGSYTEMDPVVIAAEGVEKFKNESFEIIIVDTSGRHKQEDSLFE---EMLQVSNAVQPD- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVEVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+DLEPF + F + + G D Sbjct: 274 GTGEHIDDLEPFKTQPFISKLLGMGD 299 >gi|170579858|ref|XP_001895013.1| signal recognition particle 54 kDa protein (SRP54) [Brugia malayi] gi|158598201|gb|EDP36148.1| signal recognition particle 54 kDa protein (SRP54), putative [Brugia malayi] Length = 501 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 118/235 (50%), Gaps = 10/235 (4%) Query: 81 VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140 +QR ++ +EL+ K++ P KPF +P++ + VG+ G GKTT KL+ G Sbjct: 75 IQRCVF--TELM-KLVDPGVKPFQPT-KGKPNIFMFVGLQGSGKTTTCTKLAYYYQKKGW 130 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 K L DTFR+ A DQLK A + F S D +A + + +++I+D Sbjct: 131 KTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVTIAANGVDKFKDDGFEIIIVD 190 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 T+GR + L +M++V ++P +++ V+DA+ GQ Q F Sbjct: 191 TSGRHKQEASLFE---EMLQVSNAVNPS---NIVFVMDASIGQACEAQARAFSETVDVGS 244 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+D A+GGG + V PV F+G GE I+D EPF K F + G D Sbjct: 245 VIITKLDSHAKGGGALSAVAATHSPVIFIGTGEHIDDFEPFEVKPFVQKLLGMGD 299 >gi|167032079|ref|YP_001667310.1| signal recognition particle protein [Pseudomonas putida GB-1] gi|166858567|gb|ABY96974.1| signal recognition particle protein [Pseudomonas putida GB-1] Length = 458 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 94/306 (30%), Positives = 156/306 (50%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KERA 59 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N D + P V+L+ G+ G GKTT GK Sbjct: 60 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLALNAAPPAVVLMAGLQGAGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL+ A+ F S+I A+A A ++A Sbjct: 120 LARFLKERKKKSVMVVSADVYRPAAIKQLETLANDIGVTFFPSDISQKPVAIAEAAIREA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K +DV+I+DTAGRLH ++ +M I + +K P L V+DA TGQ+A Sbjct: 180 KLKFIDVVIVDTAGRLHIDADMMDEIKALHAAVK------PIETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+++TK+DG ARGG + + P+ F+G+GE LEPF ++ Sbjct: 234 KAFGEALPLTGVVLTKVDGDARGGAALSVRAITGKPIKFIGMGEKTEALEPFHPDRVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|28895953|ref|NP_802303.1| signal recognition particle [Streptococcus pyogenes SSI-1] gi|28811203|dbj|BAC64136.1| putative signal recognition particle [Streptococcus pyogenes SSI-1] Length = 522 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 90/312 (28%), Positives = 161/312 (51%), Gaps = 23/312 (7%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT 72 +T F S + +L++ I ++L + V +E+ L+ +D+ + V + ++ + Sbjct: 1 MTMAFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRE 60 Query: 73 KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126 + ++ Q++L V+E + +L S+ D S + P +I++VG+ G GKTT Sbjct: 61 RAIGHEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGTGKTT 118 Query: 127 VIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAY 183 GKL+ K+ + + ++ A D +R AAIDQLK + + ++G+D +A + Sbjct: 119 FAGKLANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVR 176 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 + +QA+ + D ++IDTAGRL + LM + +R +K L P+ +L V+D+ GQ Sbjct: 177 KGLEQARENRNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQ 230 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 A F+ TG+++TK+DG RGG + + P+ F G+GE I D+E F Sbjct: 231 EAANVAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHP 290 Query: 304 KDFSAVITGCLD 315 S+ I G D Sbjct: 291 DRMSSRILGMGD 302 >gi|297849956|ref|XP_002892859.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297338701|gb|EFH69118.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 444 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 103/204 (50%), Gaps = 6/204 (2%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 V++ VG+ G GKTT K + G K L DTFR+ DQLK A + F S Sbjct: 66 VVMFVGLQGAGKTTTCTKYAYYHQKKGYKTALVCADTFRAGVFDQLKQNATKAKIPFYGS 125 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 SD +A E + + +K D++I+DT+GR + L +L+ + P Sbjct: 126 YTESDPVKIAAEGVDRFKKEKCDLIIVDTSGRHKQEASLCE------EILQVAEATEPDL 179 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 V+ V+D++ GQ A Q + F +I+TKMDG A+GGG + V K PV F+G G Sbjct: 180 VIFVMDSSIGQAAFDQAQAFKQTVSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTG 239 Query: 293 EGINDLEPFVAKDFSAVITGCLDY 316 E +++ E F K F + + G D+ Sbjct: 240 EHMDEFEVFDVKPFVSRLLGKGDW 263 >gi|149692833|ref|XP_001491096.1| PREDICTED: signal recognition particle 54kDa isoform 2 [Equus caballus] Length = 513 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E ++ + + +++I+DT+GR L +M++V + P Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D EPF + F + + G D Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299 >gi|325126035|gb|ADY85365.1| Signal recognition protein Ffh [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 467 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 103/321 (32%), Positives = 160/321 (49%), Gaps = 32/321 (9%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A E+LS +L K + + K K DI ++ R E+ L+ +D+ V + Sbjct: 1 MAFENLS--ERLQKALRNLTGKGKISEEDINAASR-------EIRLALLEADVNFKVVKD 51 Query: 66 IVEELLTKRYAKDVSV-----QRVLYDVSELIHKML----MPLSKPFNWDFSHRPHVILV 116 ++ + + ++V Q+V+ V+E + KM+ + L+K H P VI++ Sbjct: 52 FIKTIKKRALGQEVQESLTPGQQVIKIVNEELTKMMGEEAVGLTKS-----PHIPTVIMM 106 Query: 117 VGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLK-IWADRTSADFVCSEI 174 VG+ G GKTT +GKL+ + M + + L AGD +R AAIDQLK I AD + E Sbjct: 107 VGLQGTGKTTTVGKLAYRLMKEEKARPFLIAGDIYRPAAIDQLKQIGADLKVPVYSDPEE 166 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 S A + + +A + D +IIDTAGRL + LM + ++ V P ++L Sbjct: 167 KS-VAKIVEDGLAEAAVHRNDYVIIDTAGRLEIDEPLMKELEEVKAV------SQPDNIL 219 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DA TGQ A + F+ TG+I+TK+DG RGG + I P+ F G GE Sbjct: 220 LVVDAMTGQVAADVAKTFNERLDVTGVILTKLDGDTRGGAALSIRAITGKPILFTGQGEK 279 Query: 295 INDLEPFVAKDFSAVITGCLD 315 + DLE F ++ I G D Sbjct: 280 LTDLEVFHPDRMASRILGMGD 300 >gi|281342878|gb|EFB18462.1| hypothetical protein PANDA_011888 [Ailuropoda melanoleuca] Length = 488 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 84 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 143 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E ++ + + +++I+DT+GR L +M++V + P Sbjct: 144 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 199 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 200 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 257 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D EPF + F + + G D Sbjct: 258 GTGEHIDDFEPFKTQPFISKLLGMGD 283 >gi|15966993|ref|NP_387346.1| signal recognition particle protein [Sinorhizobium meliloti 1021] gi|307302461|ref|ZP_07582218.1| signal recognition particle protein [Sinorhizobium meliloti BL225C] gi|307316209|ref|ZP_07595653.1| signal recognition particle protein [Sinorhizobium meliloti AK83] gi|15076266|emb|CAC47819.1| Probable signal recognition particle protein (fifty-four homolog) [Sinorhizobium meliloti 1021] gi|306898049|gb|EFN28791.1| signal recognition particle protein [Sinorhizobium meliloti AK83] gi|306903131|gb|EFN33721.1| signal recognition particle protein [Sinorhizobium meliloti BL225C] Length = 513 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/273 (31%), Positives = 143/273 (52%), Gaps = 11/273 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRY-AKDVSVQRVLYDVSELIHKMLMPL--SKPFN 104 E+ L+ +D+ + V + E++ K A+ V + V +++H L+ + S+ Sbjct: 33 EVRRALLEADVALDVVRSFTEKVREKAVGAEIVKSIKPGQMVVKIVHDELIAMLGSEGVT 92 Query: 105 WDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWA 162 D + P VI++VG+ G GKTT GK++K+++ K V++A+ DT R AA +QL+ Sbjct: 93 IDLNAAAPVVIMMVGLQGSGKTTTTGKIAKRLTARDKKKVLMASLDTRRPAAQEQLRQLG 152 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 +T D + G +A A + A+ D++I+DTAGR H + LM + ++ R Sbjct: 153 VQTGVDTLPVIAGQSPTDIAARAVQAAKLGGHDIVILDTAGRTHIDEPLMIEMAEIKR-- 210 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 PH +L V DA TGQ+A+ F G TGL++T+MDG RGG + + Sbjct: 211 ----KSNPHEILLVADALTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAVT 266 Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ +GVGE +++LE F + + I G D Sbjct: 267 GKPIKLIGVGEKMDELEEFHPRRVADRILGMGD 299 >gi|189467237|ref|ZP_03016022.1| hypothetical protein BACINT_03622 [Bacteroides intestinalis DSM 17393] gi|189435501|gb|EDV04486.1| hypothetical protein BACINT_03622 [Bacteroides intestinalis DSM 17393] Length = 439 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/279 (29%), Positives = 144/279 (51%), Gaps = 13/279 (4%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99 V E L+D+ L+ +D+ VA+ + + K ++V + + + +++H L L Sbjct: 26 NVAETLKDVRKALLDADVNYKVAKTFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQL 85 Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156 + D +P VIL+ G+ G GKTT GKL++ + + K +L A D +R AA++ Sbjct: 86 MGGETAEIDLEGKPAVILMSGLQGSGKTTFSGKLARMLKTKKNKKPLLVACDVYRPAAVE 145 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL++ A++ + +A A ++A+AK DV+I+DTAGRL + +M I Sbjct: 146 QLRVLAEQIGVPMYSEPDSKNPVKIAENAIQEAKAKGYDVVIVDTAGRLAVDEEMMNEIA 205 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + + + P+ +L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + Sbjct: 206 AIKKAIN------PNEILFVVDSMTGQDAVNTAKEFNERLDFNGVVLTKLDGDTRGGAAL 259 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I P+ F+G GE ++ ++ F S I G D Sbjct: 260 SIRSVVNKPIKFVGTGEKLDAIDQFHPSRMSDRILGMGD 298 >gi|226371618|ref|NP_001139754.1| signal recognition particle 54 kDa protein isoform 2 [Homo sapiens] gi|114652598|ref|XP_001135361.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] gi|332229143|ref|XP_003263751.1| PREDICTED: signal recognition particle 54 kDa protein isoform 2 [Nomascus leucogenys] gi|194374727|dbj|BAG62478.1| unnamed protein product [Homo sapiens] Length = 455 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 51 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 110 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E ++ + + +++I+DT+GR L +M++V + P Sbjct: 111 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 166 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 167 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 224 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D EPF + F + + G D Sbjct: 225 GTGEHIDDFEPFKTQPFISKLLGMGD 250 >gi|67540914|ref|XP_664231.1| hypothetical protein AN6627.2 [Aspergillus nidulans FGSC A4] gi|40738966|gb|EAA58156.1| hypothetical protein AN6627.2 [Aspergillus nidulans FGSC A4] gi|259480207|tpe|CBF71127.1| TPA: signal sequence receptor alpha subunit, putative (AFU_orthologue; AFUA_6G03850) [Aspergillus nidulans FGSC A4] Length = 636 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 89/282 (31%), Positives = 139/282 (49%), Gaps = 39/282 (13%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101 +ED L++ ++ A ++ E EL+ K+ SV L E + K+L P S Sbjct: 348 MEDHLLKKNVAREAAVRLCEGVKQELVGKKTGNFQSVDAALKSAMESSLRKILTPTSSLD 407 Query: 102 ---------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 N + RP+VI +VGVNGVGK+T +GK+ + ++++AA DTFRS Sbjct: 408 LLHEIDTVTKANKQGTSRPYVISIVGVNGVGKSTNLGKICYFLLQNNYRILIAACDTFRS 467 Query: 153 AAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIIDT 201 A++QL++ A R + E G DAA +A +A + A DV++IDT Sbjct: 468 GAVEQLRVHA-RNLKELSARENVGAVELYEKGYGKDAANVAKDAVEYGAANNFDVVLIDT 526 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT--- 258 AGR HN+ LM+ + K + + P+ + V +A G +++ Q F+ GT Sbjct: 527 AGRRHNDQRLMSSLEKFAKFAQ------PNKIFMVGEALVGTDSVMQARNFNQAFGTGRN 580 Query: 259 -TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G I++K D G L+ +V IP+ FLGVG+ DL Sbjct: 581 LDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 622 >gi|170723319|ref|YP_001751007.1| signal recognition particle protein [Pseudomonas putida W619] gi|169761322|gb|ACA74638.1| signal recognition particle protein [Pseudomonas putida W619] Length = 458 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 94/306 (30%), Positives = 156/306 (50%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KERA 59 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N D + P V+L+ G+ G GKTT GK Sbjct: 60 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLALNAAPPAVVLMAGLQGAGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL+ A+ F S+I A+A A ++A Sbjct: 120 LARFLKERKKKSVMVVSADVYRPAAIKQLETLANDIGVTFFPSDISQKPVAIAEAAIREA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K +DV+I+DTAGRLH ++ +M I + +K P L V+DA TGQ+A Sbjct: 180 KLKFIDVVIVDTAGRLHIDADMMDEIKALHAAVK------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+++TK+DG ARGG + + P+ F+G+GE LEPF ++ Sbjct: 234 KAFGEALPLTGVVLTKVDGDARGGAALSVRAITGKPIKFIGMGEKTEALEPFHPDRVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|71903552|ref|YP_280355.1| signal recognition particle, subunit FFH/SRP54 [Streptococcus pyogenes MGAS6180] gi|71802647|gb|AAX72000.1| signal recognition particle, subunit FFH/SRP54 [Streptococcus pyogenes MGAS6180] Length = 522 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 90/312 (28%), Positives = 161/312 (51%), Gaps = 23/312 (7%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT 72 +T F S + +L++ I ++L + V +E+ L+ +D+ + V + ++ + Sbjct: 1 MTMAFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRE 60 Query: 73 KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126 + ++ Q++L V+E + +L S+ D S + P +I++VG+ G GKTT Sbjct: 61 RAIGHEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTT 118 Query: 127 VIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAY 183 GKL+ K+ + + ++ A D +R AAIDQLK + + ++G+D +A + Sbjct: 119 FAGKLANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVR 176 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 + +QA+ + D ++IDTAGRL + LM + +R +K L P+ +L V+D+ GQ Sbjct: 177 KGLEQARENRNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQ 230 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 A F+ TG+++TK+DG RGG + + P+ F G+GE I D+E F Sbjct: 231 EAANVAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHP 290 Query: 304 KDFSAVITGCLD 315 S+ I G D Sbjct: 291 DRMSSRILGMGD 302 >gi|15639566|ref|NP_219016.1| cell division protein (ftsY) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025805|ref|YP_001933577.1| cell division protein [Treponema pallidum subsp. pallidum SS14] gi|3322872|gb|AAC65553.1| cell division protein (ftsY) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018380|gb|ACD70998.1| cell division protein [Treponema pallidum subsp. pallidum SS14] Length = 295 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 92/272 (33%), Positives = 145/272 (53%), Gaps = 13/272 (4%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ---RVLY-DVSELIHKML 96 LD+ LE+LLI D+ ++ A+ +L + V + R L+ ++ E ++ Sbjct: 22 LDETFFSALEELLIEGDLSLSTAESFCTQLRNAARTRSVHTEDALRTLFAEIMESCVRVT 81 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAI 155 P ++ + L++GVNG GKTT KL+ + ++ AA DTFR+AA Sbjct: 82 HLAPNP------NQCSLYLLLGVNGSGKTTSAAKLAAYYQTQKVHPILFAAADTFRAAAA 135 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 +QL + + G D AA+ ++A + +A+K +L++DTAGRLHN + L+A + Sbjct: 136 EQLAHHGAQLGVRVIAHPGGKDPAAVVFDAGEALRAQKRGLLLVDTAGRLHNKTHLIAEL 195 Query: 216 GKMIRVLK-RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 K+ R+ + ++ A +L VLDATTGQNA RQ + FH G L++ K D ARGG Sbjct: 196 QKIDRIAQTKVSADAYRKIL-VLDATTGQNAFRQAQTFHEAIGVDALLLAKCDTRARGGA 254 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + I+ IP+ FLG GE DL A++F Sbjct: 255 VFSIMQELGIPLAFLGWGERYTDLVEANAREF 286 >gi|4507215|ref|NP_003127.1| signal recognition particle 54 kDa protein isoform 1 [Homo sapiens] gi|50979080|ref|NP_001003272.1| signal recognition particle 54 kDa protein [Canis lupus familiaris] gi|84000369|ref|NP_001033290.1| signal recognition particle 54 kDa protein [Bos taurus] gi|197103004|ref|NP_001126912.1| signal recognition particle 54 kDa protein [Pongo abelii] gi|55640599|ref|XP_509903.1| PREDICTED: hypothetical protein isoform 7 [Pan troglodytes] gi|109083294|ref|XP_001082531.1| PREDICTED: signal recognition particle 54 kDa protein isoform 1 [Macaca mulatta] gi|114652587|ref|XP_001135626.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] gi|114652590|ref|XP_001135796.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes] gi|114652592|ref|XP_001136048.1| PREDICTED: signal recognition particle 54 kDa protein isoform 5 [Pan troglodytes] gi|149410337|ref|XP_001511597.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] gi|149692831|ref|XP_001491075.1| PREDICTED: signal recognition particle 54kDa isoform 1 [Equus caballus] gi|296214799|ref|XP_002753859.1| PREDICTED: signal recognition particle 54 kDa protein isoform 1 [Callithrix jacchus] gi|301774887|ref|XP_002922872.1| PREDICTED: signal recognition particle 54 kDa protein-like [Ailuropoda melanoleuca] gi|332229141|ref|XP_003263750.1| PREDICTED: signal recognition particle 54 kDa protein isoform 1 [Nomascus leucogenys] gi|46577649|sp|P61010|SRP54_CANFA RecName: Full=Signal recognition particle 54 kDa protein; Short=SRP54 gi|46577650|sp|P61011|SRP54_HUMAN RecName: Full=Signal recognition particle 54 kDa protein; Short=SRP54 gi|68731680|sp|Q5R4R6|SRP54_PONAB RecName: Full=Signal recognition particle 54 kDa protein; Short=SRP54 gi|73621949|sp|Q4R965|SRP54_MACFA RecName: Full=Signal recognition particle 54 kDa protein; Short=SRP54 gi|122142857|sp|Q2T9U1|SRP54_BOVIN RecName: Full=Signal recognition particle 54 kDa protein; Short=SRP54 gi|119390387|pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs gi|930|emb|CAA34385.1| unnamed protein product [Canis lupus familiaris] gi|784999|emb|CAA60132.1| SRP 54 [Homo sapiens] gi|1256820|gb|AAC50994.1| signal recognition particle [Homo sapiens] gi|12653733|gb|AAH00652.1| Signal recognition particle 54kDa [Homo sapiens] gi|13097267|gb|AAH03389.1| Signal recognition particle 54kDa [Homo sapiens] gi|55733132|emb|CAH93250.1| hypothetical protein [Pongo abelii] gi|67967747|dbj|BAE00356.1| unnamed protein product [Macaca fascicularis] gi|83405301|gb|AAI11271.1| Signal recognition particle 54kDa [Bos taurus] gi|90076082|dbj|BAE87721.1| unnamed protein product [Macaca fascicularis] gi|90076300|dbj|BAE87830.1| unnamed protein product [Macaca fascicularis] gi|177771971|gb|ACB73260.1| signal recognition particle (predicted) [Rhinolophus ferrumequinum] gi|189053540|dbj|BAG35706.1| unnamed protein product [Homo sapiens] gi|296475353|gb|DAA17468.1| signal recognition particle 54 kDa protein [Bos taurus] gi|325464281|gb|ADZ15911.1| signal recognition particle 54kDa [synthetic construct] gi|226429|prf||1512310A SRP protein 54kD Length = 504 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E ++ + + +++I+DT+GR L +M++V + P Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D EPF + F + + G D Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299 >gi|224059270|ref|XP_002299799.1| predicted protein [Populus trichocarpa] gi|222847057|gb|EEE84604.1| predicted protein [Populus trichocarpa] Length = 493 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 88/290 (30%), Positives = 142/290 (48%), Gaps = 19/290 (6%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVA-------QKIVE-ELLTKRYAKDVSVQRVLY 86 II + L+D + E + L++SD+ + +KIV + L + K +Q+ ++ Sbjct: 22 IIDEKALNDCLNE-ITRALLQSDVQFKLVRDMQTNIKKIVNLDDLAAGHNKRRIIQQAIF 80 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + EL K+L P F + V++ VG+ G GKTT K + G K L Sbjct: 81 N--ELC-KILDPGKSSFTPK-KGKTSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 DTFR+ A DQLK A + F S SD +A E + + + D++I+DT+GR Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAEEGVETFKKENCDLIIVDTSGRHK 196 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + L + ++ K P ++ V+D++ GQ A Q + F + +I+TKM Sbjct: 197 QEAALFEEMRQVSEATK------PDLIIFVMDSSIGQAAFDQAQAFKQMVAVGAVIITKM 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316 DG A+GGG + V K PV F+G GE +++ E F K F + + G D+ Sbjct: 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300 >gi|296214803|ref|XP_002753861.1| PREDICTED: signal recognition particle 54 kDa protein isoform 3 [Callithrix jacchus] Length = 455 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 51 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 110 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E ++ + + +++I+DT+GR L +M++V + P Sbjct: 111 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 166 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 167 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 224 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D EPF + F + + G D Sbjct: 225 GTGEHIDDFEPFKTQPFISKLLGMGD 250 >gi|237723193|ref|ZP_04553674.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|293372708|ref|ZP_06619090.1| signal recognition particle protein [Bacteroides ovatus SD CMC 3f] gi|229447715|gb|EEO53506.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|292632517|gb|EFF51113.1| signal recognition particle protein [Bacteroides ovatus SD CMC 3f] Length = 440 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 65/193 (33%), Positives = 108/193 (55%), Gaps = 7/193 (3%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 RP VIL+ G+ G GKTT GKL++ + + K +L A D +R AAI+QL++ A++ Sbjct: 98 RPAVILMSGLQGSGKTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIEQLRVLAEQIEVP 157 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 C + +A A ++A+AK D++I+DTAGRL + +M I + + + Sbjct: 158 MYCELDSKNPVEIAQHAIQEAKAKGYDLVIVDTAGRLAVDEQMMNEIAAIKKAIN----- 212 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P +L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + I P+ F Sbjct: 213 -PDEILFVVDSMTGQDAVNTAKEFNERLDFNGVVLTKLDGDTRGGAALSIRSVVNKPIKF 271 Query: 289 LGVGEGINDLEPF 301 +G GE + ++ F Sbjct: 272 VGTGEKLEAIDQF 284 >gi|94990538|ref|YP_598638.1| signal recognition particle subunit FFH/SRP54 [Streptococcus pyogenes MGAS10270] gi|94544046|gb|ABF34094.1| signal recognition particle subunit FFH/SRP54 [Streptococcus pyogenes MGAS10270] Length = 522 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 90/312 (28%), Positives = 161/312 (51%), Gaps = 23/312 (7%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT 72 +T F S + +L++ I ++L + V +E+ L+ +D+ + V + ++ + Sbjct: 1 MTMAFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRE 60 Query: 73 KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126 + ++ Q++L V+E + +L S+ D S + P +I++VG+ G GKTT Sbjct: 61 RAIGHEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTT 118 Query: 127 VIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAY 183 GKL+ K+ + + ++ A D +R AAIDQLK + + ++G+D +A + Sbjct: 119 FAGKLANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVR 176 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 + +QA+ + D ++IDTAGRL + LM + +R +K L P+ +L V+D+ GQ Sbjct: 177 KGLEQARENRNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQ 230 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 A F+ TG+++TK+DG RGG + + P+ F G+GE I D+E F Sbjct: 231 EAANVAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHP 290 Query: 304 KDFSAVITGCLD 315 S+ I G D Sbjct: 291 DRMSSRILGMGD 302 >gi|121703808|ref|XP_001270168.1| signal sequence receptor alpha subunit, putative [Aspergillus clavatus NRRL 1] gi|119398312|gb|EAW08742.1| signal sequence receptor alpha subunit, putative [Aspergillus clavatus NRRL 1] Length = 654 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 91/282 (32%), Positives = 139/282 (49%), Gaps = 38/282 (13%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101 +ED L++ ++ A ++ E EL+ K+ SV L E + K+L P S Sbjct: 365 MEDHLLKKNVAREAAVRLCEGVQRELVGKKTGNFQSVDAALRSAMESSLRKILTPTSSLD 424 Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 P + + RP+VI +VGVNGVGK+T + K+ + +V++AA DTFR Sbjct: 425 LLREIETVRSPSSKGQAPRPYVISIVGVNGVGKSTNLSKICYFLLQNNYRVLIAACDTFR 484 Query: 152 SAAIDQLKIWA---DRTSADFVCSEI-------GSDAAALAYEAFKQAQAKKVDVLIIDT 201 S A++QL++ A SA E+ G DAA +A +A + A DV++IDT Sbjct: 485 SGAVEQLRVHARNLKELSARETAGEVELYEKGYGKDAANVAKDAVEYGAANDFDVVLIDT 544 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT--- 258 AGR HN+ LM+ + K + K P + V +A G +++ Q F+ GT Sbjct: 545 AGRRHNDQRLMSSLEKFAKFAK------PDKIFMVGEALVGTDSVMQARNFNQAFGTGRN 598 Query: 259 -TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G I++K D G L+ +V IP+ FLGVG+ DL Sbjct: 599 LDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 640 >gi|81428329|ref|YP_395329.1| Signal recognition particle protein Ffh [Lactobacillus sakei subsp. sakei 23K] gi|78609971|emb|CAI55018.1| Signal recognition particle protein Ffh [Lactobacillus sakei subsp. sakei 23K] Length = 478 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/271 (31%), Positives = 136/271 (50%), Gaps = 17/271 (6%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + ++ + K +V Q+++ V E + KM+ + P N Sbjct: 39 LLEADVNFKVVKDFIKVVKEKAIGTEVLESLSPAQQIVKIVDEELTKMMGETAVPLNKS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P +I++VG+ G GKTT GKL+ + + + ++ A D +R AAIDQLK ++ Sbjct: 98 PKIPTIIMMVGLQGAGKTTTAGKLATYLIKNEKARPLMIAADIYRPAAIDQLKTVGEQVG 157 Query: 167 ADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 A E+G+D + + QA +K D ++IDTAGRL + LM + I L R Sbjct: 158 APVF--EMGTDVNPVEIVRQGLAQAALQKNDYVLIDTAGRLQIDEALMQELAD-INDLAR 214 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P+ L +DA TGQ A+ E F++ TG+++TK+DG RGG + I Sbjct: 215 -----PNETLLTVDAMTGQAAVDVAEGFNSRLDITGVVLTKLDGDTRGGAALSIRAVTGK 269 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F G GE +N L+ F S+ I G D Sbjct: 270 PIKFTGQGEKLNQLDVFYPDRMSSRILGMGD 300 >gi|325685920|gb|EGD27985.1| signal recognition particle protein Ffh [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 476 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 102/321 (31%), Positives = 161/321 (50%), Gaps = 32/321 (9%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A E+LS +L K + + K K DI ++ R E+ L+ +D+ V + Sbjct: 1 MAFENLS--ERLQKALRNLTGKGKISEEDINAASR-------EIRLALLEADVNFKVVKD 51 Query: 66 IVEELLTKRYAKDVSV-----QRVLYDVSELIHKML----MPLSKPFNWDFSHRPHVILV 116 ++ + + ++V Q+V+ V+E + KM+ + L+K H P VI++ Sbjct: 52 FIKTIKKRALGQEVQESLTPGQQVIKIVNEELTKMMGEEAVGLTKS-----PHIPTVIMM 106 Query: 117 VGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQL-KIWADRTSADFVCSEI 174 VG+ G GKTT +GKL+ + M + + L AGD +R AAIDQL +I AD + E Sbjct: 107 VGLQGTGKTTTVGKLAYRLMKEEKARPFLIAGDIYRPAAIDQLEQIGADLKVPVYSDPEE 166 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 S A + + +A + D +IIDTAGRL + LM + ++ V + P ++L Sbjct: 167 KS-VAKIVEDGLAEAAVHRNDYVIIDTAGRLEIDEPLMKELEEVKAVAQ------PDNIL 219 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DA TGQ A + F+ TG+I+TK+DG RGG + I P+ F G GE Sbjct: 220 LVVDAMTGQAAADVAKTFNERLDVTGVILTKLDGDTRGGAALSIRAITGKPILFTGQGEK 279 Query: 295 INDLEPFVAKDFSAVITGCLD 315 + DLE F ++ I G D Sbjct: 280 LTDLEVFHPDRMASRILGMGD 300 >gi|307704985|ref|ZP_07641872.1| signal recognition particle protein [Streptococcus mitis SK597] gi|307621436|gb|EFO00486.1| signal recognition particle protein [Streptococcus mitis SK597] Length = 523 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QAQA D ++IDTAGRL + +LM +R +K L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQANHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|212550936|ref|YP_002309253.1| signal recognition particle protein [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549174|dbj|BAG83842.1| signal recognition particle protein [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 439 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 94/298 (31%), Positives = 152/298 (51%), Gaps = 18/298 (6%) Query: 25 SLKLKEG---ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 SLKL +G IT+I + L D +R+ L D + I + + E+ L + + Sbjct: 12 SLKLLKGEGKITEINVAETLKD-IRKSLLDADVNYKIAKSFTNTVKEKALGQNVLGSIKP 70 Query: 82 QRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139 ++ +++H L L S + S++ +IL+ G+ G GKTT KL+K + D Sbjct: 71 GELMV---KIVHDELSNLMGSNASELNLSNKLSIILISGLQGSGKTTFCSKLAKMLKDKK 127 Query: 140 LK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA-ALAYEAFKQAQAKKVDVL 197 K +L A D +R AAIDQLKI + V SE+ + ++ +A A KQA+ K DV+ Sbjct: 128 NKNPLLVADDIYRPAAIDQLKILGKQIDVT-VYSELNNKSSIQIAQSAIKQAKQDKNDVV 186 Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257 IIDTAGRL + +M I + + + P +L V+D+ TGQ+A+ + F+ Sbjct: 187 IIDTAGRLAVDQRMMEEIASIKKAIN------PDEILFVVDSMTGQDAVNTAKEFNNRLD 240 Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G+++TK+DG RGG + I P+ F+ GE + ++ F K + I G D Sbjct: 241 FSGIVLTKLDGDTRGGAALSIRAVVNKPIKFVSRGEKMESIDIFHPKRMADRILGMGD 298 >gi|311260885|ref|XP_001927834.2| PREDICTED: signal recognition particle 54 kDa protein isoform 1 [Sus scrofa] Length = 506 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E ++ + + +++I+DT+GR L +M++V + P Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D EPF + F + + G D Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299 >gi|303324207|ref|XP_003072091.1| signal recognition particle protein, putative [Coccidioides posadasii C735 delta SOWgp] gi|240111801|gb|EER29946.1| signal recognition particle protein, putative [Coccidioides posadasii C735 delta SOWgp] gi|320037086|gb|EFW19024.1| signal sequence receptor alpha subunit [Coccidioides posadasii str. Silveira] Length = 647 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 91/283 (32%), Positives = 138/283 (48%), Gaps = 40/283 (14%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101 +ED L++ ++ A ++ E EL+ K+ S+ L E + K+L P S Sbjct: 358 MEDHLLKKNVAREAALRLCEGVEHELVGKKTGSFQSIDSALRSAMESSLRKILTPTSSLD 417 Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 P N + RP+VI +VGVNGVGK+T + K+ + KV++AA DTFR Sbjct: 418 LLREIDAVTSPRNNQQARRPYVISIVGVNGVGKSTNLSKICFFLLQNNYKVLIAACDTFR 477 Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200 S A++QL++ A R + E G DAA +A +A A + DV++ID Sbjct: 478 SGAVEQLRVHA-RNLKELSEREQVGQIELYEKGYGKDAANVAKDAVAYAASNDFDVVLID 536 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258 TAGR HN+ LM+ + K + AP + V +A G +++ Q F+ GT Sbjct: 537 TAGRRHNDQRLMSSLEKFAKFA------APDKIFMVGEALVGTDSVMQARNFNQAFGTGR 590 Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G I++K D G L+ +V IP+ FLGVG+ DL Sbjct: 591 SLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 633 >gi|114705073|ref|ZP_01437981.1| signal recognition particle protein [Fulvimarina pelagi HTCC2506] gi|114539858|gb|EAU42978.1| signal recognition particle protein [Fulvimarina pelagi HTCC2506] Length = 527 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/278 (30%), Positives = 144/278 (51%), Gaps = 21/278 (7%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSELIHKMLMPL 99 E+ L+ +D+ + V ++ E + K +V V ++++D ELI + Sbjct: 33 EVRRALLEADVALEVVREFTERVRAKAVGAEVLKSIKPGQMVVKIVHD--ELIETLG--- 87 Query: 100 SKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQ 157 S+ + D + P +++VG+ G GKTT GK++K++ D K V++A+ DT R AA +Q Sbjct: 88 SEGVSIDLNAPAPVTLMMVGLQGSGKTTTTGKIAKRLKDKQRKKVLMASLDTRRPAAQEQ 147 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 LK+ ++T D + G +A A + A+ DV+I+DTAGR H + LM + Sbjct: 148 LKVLGEQTQVDTLPIIAGQGPVEIAVRAEQAARLGGYDVVILDTAGRTHIDEPLMVEMAN 207 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 I+V + PH +L V D+ TGQ+A+ F G TG+++T++DG RGG + Sbjct: 208 -IKVRTK-----PHEILLVADSLTGQDAVNLARSFDERVGVTGIVLTRVDGDGRGGAALS 261 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + P+ +GVGE ++ LE F + I G D Sbjct: 262 MRAVTGKPIKLIGVGEKMDALEDFHPSRIADRILGMGD 299 >gi|94994460|ref|YP_602558.1| signal recognition particle subunit FFH/SRP54 [Streptococcus pyogenes MGAS10750] gi|94547968|gb|ABF38014.1| signal recognition particle subunit FFH/SRP54 [Streptococcus pyogenes MGAS10750] Length = 522 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 90/312 (28%), Positives = 161/312 (51%), Gaps = 23/312 (7%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT 72 +T F S + +L++ I ++L + V +E+ L+ +D+ + V + ++ + Sbjct: 1 MTMAFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRE 60 Query: 73 KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126 + ++ Q++L V+E + +L S+ D S + P +I++VG+ G GKTT Sbjct: 61 RAIGHEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTT 118 Query: 127 VIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAY 183 GKL+ K+ + + ++ A D +R AAIDQLK + + ++G+D +A + Sbjct: 119 FAGKLANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVR 176 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 + +QA+ + D ++IDTAGRL + LM + +R +K L P+ +L V+D+ GQ Sbjct: 177 KGLEQARENRNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQ 230 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 A F+ TG+++TK+DG RGG + + P+ F G+GE I D+E F Sbjct: 231 EAANVAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHP 290 Query: 304 KDFSAVITGCLD 315 S+ I G D Sbjct: 291 DRMSSRILGMGD 302 >gi|42523591|ref|NP_968971.1| signal recognition particle protein [Bdellovibrio bacteriovorus HD100] gi|39575797|emb|CAE79964.1| signal recognition particle protein [Bdellovibrio bacteriovorus HD100] Length = 450 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/258 (31%), Positives = 131/258 (50%), Gaps = 20/258 (7%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKMLMPL--SKPFN 104 L+ +D+ V + ++++ K +DV L +V+ +++H L+ + + Sbjct: 45 LLEADVNFKVVKTFIDKVKEKALGQDV-----LTNVNPGQMFVKIVHDELVNVLGGGAVD 99 Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWAD 163 + P VI +VG+ G GKTT KLS + K L D +R AAIDQL++ Sbjct: 100 INVRENPSVIFLVGLQGAGKTTSAAKLSLYIRQKLNKKPGLVPADIYRPAAIDQLQVLGK 159 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + + +++G + +A + A+ V+V+I+DTAGRL + LM +G++ + Sbjct: 160 QNNIPTFPTQVGMKPEEILEKAKQWARDNMVEVVIVDTAGRLQIDEDLMGELGRLKEIW- 218 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 P +L V DA GQ ++ E FH TGL++TK+DG ARGG + I Sbjct: 219 -----TPQEILLVADAMLGQQSVNVAEGFHKRLNLTGLVLTKVDGDARGGAALSIREVTG 273 Query: 284 IPVYFLGVGEGINDLEPF 301 IP+ FLG+GE + LE F Sbjct: 274 IPIKFLGIGEKVTALEVF 291 >gi|124486290|ref|YP_001030906.1| signal recognition particle protein Srp54 [Methanocorpusculum labreanum Z] gi|166222334|sp|A2STI3|SRP54_METLZ RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|124363831|gb|ABN07639.1| signal recognition particle subunit FFH/SRP54 (srp54) [Methanocorpusculum labreanum Z] Length = 446 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 94/290 (32%), Positives = 143/290 (49%), Gaps = 27/290 (9%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS--------VQRVLY 86 +I +D+ VR+ L+ L+ SD+ V + ++ +++ + +D+ V R++Y Sbjct: 22 VIDRAAVDELVRD-LQRALLSSDVNVKLVMELSKQIKARSLDEDLPKGINAREHVLRIVY 80 Query: 87 -DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 ++ L+ K +FS +P IL+ G+ G GKTT GKL + GLKV Sbjct: 81 QELVNLVGK---------EAEFSLKPQKILMAGLQGSGKTTTTGKLCRYFQRKGLKVGAI 131 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 D FR A QL+ + + DA + + A K VDV+I+DTAGR Sbjct: 132 GADNFRPGAYAQLETLCKKINVPSYGDPKEKDAVKIVKDGL--AALKDVDVIIVDTAGRH 189 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 L I ++ +V L+P H L V+DA GQ A Q + FH G G+I+TK Sbjct: 190 ALEDDL---IDEITQVNAYLNPD--HRWL-VIDAALGQAARDQAKRFHEAIGIDGVIVTK 243 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 MDGTA+GGG + V + + F+G GE I+DLE F F + + G D Sbjct: 244 MDGTAKGGGAMSAVAETQSGIVFIGNGETIDDLERFDPNGFISRLLGMGD 293 >gi|153791464|ref|NP_001093580.1| signal recognition particle 54C [Mus musculus] Length = 504 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E ++ + + +++I+DT+GR L +M++V + P Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVSNAIQPD- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D EPF + F + + G D Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299 >gi|326469321|gb|EGD93330.1| signal sequence receptor alpha subunit [Trichophyton tonsurans CBS 112818] Length = 650 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 91/283 (32%), Positives = 138/283 (48%), Gaps = 40/283 (14%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLY-DVSELIHKMLMP----- 98 +ED L++ ++ A ++ E EL+ K+ A S+ L + + K+L P Sbjct: 361 MEDHLLKKNVAREAAVRLCEGVQKELVGKKTASFQSIDSALRAGMESSLRKILTPTTSLD 420 Query: 99 -------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 ++ P N RP+VI VVGVNGVGK+T + KL + KV++AA DTFR Sbjct: 421 LLREIEVVTSPTNQQQPRRPYVISVVGVNGVGKSTNLSKLCFFLLQNKYKVLIAACDTFR 480 Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200 S A++QL++ A R + E G DAA +A +A A + DV++ID Sbjct: 481 SGAVEQLRVHA-RNLKELSARENAGHVELYEKGYGKDAANVAKDAVAYAASNDFDVVLID 539 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258 TAGR HN+ LM+ + K + P +L V +A G +++ Q F+ G Sbjct: 540 TAGRRHNDQRLMSSLEKFAKFAN------PDKILMVGEALVGTDSVMQARNFNQAFGPGR 593 Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G I++K D G L+ +V IP+ FLGVG+ DL Sbjct: 594 GLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 636 >gi|15834914|ref|NP_296673.1| signal recognition particle [Chlamydia muridarum Nigg] gi|270285084|ref|ZP_06194478.1| signal recognition particle [Chlamydia muridarum Nigg] gi|270289107|ref|ZP_06195409.1| signal recognition particle [Chlamydia muridarum Weiss] gi|301336480|ref|ZP_07224682.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia muridarum MopnTet14] gi|7190336|gb|AAF39161.1| signal recognition particle [Chlamydia muridarum Nigg] Length = 448 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 112/208 (53%), Gaps = 9/208 (4%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 RP V+L G+ G GKTT KL+ + KV++A+ D R +A+DQL+ +T A Sbjct: 98 RPAVVLFCGLQGAGKTTTCAKLADYVLREKKAKKVLVASCDLKRFSAVDQLEGLIKQTGA 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 DF + G + ++A EA + A+ + D+LI+DTAGRLH + LM + + RV Sbjct: 158 DFF-RKKGENPVSMASEAVRYAKDQGYDLLIVDTAGRLHVDDALMDELVAIARVTN---- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V++ GQ+A+ + F G TG++++ DG AR G ++ + P+ Sbjct: 213 --PSEILFVMNLAMGQDAVTTAKAFDERLGLTGIVVSMADGDARAGAVLSVKSLLGRPIK 270 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I DL PF A+ + I G D Sbjct: 271 FEGCGEKIKDLRPFNAQSMAERILGMGD 298 >gi|326483433|gb|EGE07443.1| signal recognition particle receptor subunit alpha [Trichophyton equinum CBS 127.97] Length = 650 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 91/283 (32%), Positives = 138/283 (48%), Gaps = 40/283 (14%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLY-DVSELIHKMLMP----- 98 +ED L++ ++ A ++ E EL+ K+ A S+ L + + K+L P Sbjct: 361 MEDHLLKKNVAREAAVRLCEGVQKELVGKKTASFQSIDSALRAGMESSLRKILTPTTSLD 420 Query: 99 -------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 ++ P N RP+VI VVGVNGVGK+T + KL + KV++AA DTFR Sbjct: 421 LLREIEVVTSPTNQQQPRRPYVISVVGVNGVGKSTNLSKLCFFLLQNKYKVLIAACDTFR 480 Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200 S A++QL++ A R + E G DAA +A +A A + DV++ID Sbjct: 481 SGAVEQLRVHA-RNLKELSARENAGHVELYEKGYGKDAANVAKDAVAYAASNDFDVVLID 539 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258 TAGR HN+ LM+ + K + P +L V +A G +++ Q F+ G Sbjct: 540 TAGRRHNDQRLMSSLEKFAKFAN------PDKILMVGEALVGTDSVMQARNFNQAFGPGR 593 Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G I++K D G L+ +V IP+ FLGVG+ DL Sbjct: 594 GLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 636 >gi|219682754|ref|YP_002469137.1| signal recognition particle protein [Bifidobacterium animalis subsp. lactis AD011] gi|219620404|gb|ACL28561.1| signal recognition particle protein [Bifidobacterium animalis subsp. lactis AD011] gi|289178052|gb|ADC85298.1| signal recognition particle, subunit Ffh/Srp54 [Bifidobacterium animalis subsp. lactis BB-12] Length = 590 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 91/324 (28%), Positives = 155/324 (47%), Gaps = 36/324 (11%) Query: 21 FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F+S + +L + S +L D G E+ L+ +D+ + V + + + + Sbjct: 47 FSSLTDRLSNAFKHLKSKGKLSDADIDGTIREIRRALLDADVSLDVVRSFTARVRDRALS 106 Query: 77 KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +VS Q+V+ V++ + +L + +P N+ + P +I++ G+ G GKTT+ GK Sbjct: 107 TEVSEALNPAQQVVRIVNDELTDILGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 165 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175 L + D+G +L A D R A+ QL++ +R E G Sbjct: 166 LGYWLKDSGHTPLLVAADLQRPNAVTQLEVVGERAGVPVYAPEKGVQSAGGDAVSAPGET 225 Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 D +A ++ + A+ K D +IIDTAGRL + LM + R ++ D P+ VL Sbjct: 226 TGDPVKVARDSIEYARQKMYDTVIIDTAGRLGVDETLM----QQARDIR--DAVQPNEVL 279 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DA TGQ+A+R + F TG++++K+DG RGG + + P+ F GEG Sbjct: 280 FVIDAMTGQDAVRTAQAFDEGVNFTGVVLSKLDGDTRGGAALSVASVTGKPILFASNGEG 339 Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318 + D E F ++ I LD G+ Sbjct: 340 LKDFEVFHPDRMASRI---LDMGD 360 >gi|307709396|ref|ZP_07645854.1| signal recognition particle protein [Streptococcus mitis SK564] gi|307619979|gb|EFN99097.1| signal recognition particle protein [Streptococcus mitis SK564] Length = 523 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QAQA D ++IDTAGRL + +LM +R +K L Sbjct: 159 PVFALGTEVPAVDIVRQGLEQAQANHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|294631640|ref|ZP_06710200.1| signal recognition particle protein [Streptomyces sp. e14] gi|292834973|gb|EFF93322.1| signal recognition particle protein [Streptomyces sp. e14] Length = 516 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 83/267 (31%), Positives = 137/267 (51%), Gaps = 15/267 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + ++ + + DVS Q+VL V+E + ++L Sbjct: 28 DATAREIRIALLEADVALPVVRTFIKNVKERALGADVSKALNPAQQVLKIVNEELVEILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + P VI++ G+ G GKTT+ GKL K + + G +L A D R A++Q Sbjct: 88 GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGKWLKEQGHSPLLVACDLQRPNAVNQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + ADR E G+ D +A ++ + A+AK D++I+DTAGRL + +M Sbjct: 147 LSVVADRAGVAVYAPEPGNGVGDPVKVAKDSIEFAKAKVHDIVIVDTAGRLGIDQEMMRQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P +L V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301 + I P+ F GE ++D + F Sbjct: 261 ALSIRQITGKPIMFASNGEKLDDFDAF 287 >gi|47214799|emb|CAF89626.1| unnamed protein product [Tetraodon nigroviridis] Length = 514 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 100 KNNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E + +A+ +++I+DT+GR L +M++V + P Sbjct: 160 YGSYTEMDPVVIATEGVDKFKAENFEIIIVDTSGRHKQEDSLFE---EMLQVSNAVQPD- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V + P+ F+ Sbjct: 216 --NIVYVMDASIGQACESQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATRSPIIFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D EPF + F + + G D Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299 >gi|253581989|ref|ZP_04859213.1| IISP Type II signal recognition particle GTPase [Fusobacterium varium ATCC 27725] gi|251836338|gb|EES64875.1| IISP Type II signal recognition particle GTPase [Fusobacterium varium ATCC 27725] Length = 446 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/282 (28%), Positives = 140/282 (49%), Gaps = 15/282 (5%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93 + ++E L+++ L+ +D+ V + ++L K DV Q+ + V++ + Sbjct: 24 ESNIKEALKEVRMSLLEADVNYKVVKDFTNKILEKSVGTDVLKGINPGQQFIKVVNDELV 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 ++L + + P V+++ G+ G GKTT KL+ + G V++ D +R A Sbjct: 84 ELLGGTNSRLTKGVRN-PTVLMLSGLQGAGKTTFAVKLANYLKKQGESVLMVGADVYRPA 142 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 AI QL++ ++ + E D A+ +A+ +IIDTAGRLH + LM Sbjct: 143 AIKQLQVLGEQINVPVYAEEDNKDTVAICEHGLAKAKELNSTYMIIDTAGRLHIDEKLME 202 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + + + ++ P +L V+DA GQ+A+ E F+ V G+++TK+DG RGG Sbjct: 203 ELRSIKKAVR------PQEILLVVDAMIGQDAVNLAEAFNNVLSIDGIVLTKLDGDTRGG 256 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+GVGE I+D+E F + + I G D Sbjct: 257 AALSIKSVVGKPIKFVGVGERIDDIELFHPERLVSRILGMGD 298 >gi|306825356|ref|ZP_07458696.1| signal recognition particle protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432294|gb|EFM35270.1| signal recognition particle protein [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 523 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QAQA D ++IDTAGRL + +LM +R +K L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQANHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|288553090|ref|YP_003425025.1| signal recognition particle protein [Bacillus pseudofirmus OF4] gi|288544250|gb|ADC48133.1| signal recognition particle [Bacillus pseudofirmus OF4] Length = 452 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT KL+ + + ML A D +R AAI QL+ + + Sbjct: 101 PTVVMMVGLQGAGKTTTTAKLANHLRKKQNRTPMLVAADIYRPAAIKQLETLGKQLNMPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 +A +A +A+ D ++IDTAGRLH + LM + ++ + K Sbjct: 161 FSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMGELQEVKEIAK------ 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P +L V+DA TGQ+A+ E F+ TG+++TK+DG RGG I + P+ F Sbjct: 215 PDEILLVVDAMTGQDAVNVAESFNEQLDVTGVVLTKLDGDTRGGAAISVKAVTNTPIKFA 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+GE I+ LEPF ++ I G D Sbjct: 275 GMGEKIDQLEPFYPDRMASRILGMGD 300 >gi|319939112|ref|ZP_08013476.1| signal recognition particle GTPase [Streptococcus anginosus 1_2_62CV] gi|319812162|gb|EFW08428.1| signal recognition particle GTPase [Streptococcus anginosus 1_2_62CV] Length = 516 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + G + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEEGARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QA+A D ++IDTAGRL + LM +R +K L Sbjct: 159 PVFSLGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLM----NELRDVKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|296214801|ref|XP_002753860.1| PREDICTED: signal recognition particle 54 kDa protein isoform 2 [Callithrix jacchus] gi|297297688|ref|XP_001083050.2| PREDICTED: signal recognition particle 54 kDa protein isoform 3 [Macaca mulatta] gi|332229145|ref|XP_003263752.1| PREDICTED: signal recognition particle 54 kDa protein isoform 3 [Nomascus leucogenys] gi|332842112|ref|XP_001136118.2| PREDICTED: signal recognition particle 54 kDa protein isoform 6 [Pan troglodytes] gi|194373485|dbj|BAG56838.1| unnamed protein product [Homo sapiens] Length = 466 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 62 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 121 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E ++ + + +++I+DT+GR L +M++V + P Sbjct: 122 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 177 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 178 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 235 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D EPF + F + + G D Sbjct: 236 GTGEHIDDFEPFKTQPFISKLLGMGD 261 >gi|139473726|ref|YP_001128442.1| signal recognition particle protein [Streptococcus pyogenes str. Manfredo] gi|134271973|emb|CAM30211.1| signal recognition particle protein [Streptococcus pyogenes str. Manfredo] Length = 520 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 89/308 (28%), Positives = 160/308 (51%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L++ I ++L + V +E+ L+ +D+ + V + ++ + + Sbjct: 3 FESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130 ++ Q++L V+E + +L S+ D S + P +I++VG+ G GKTT +GK Sbjct: 63 HEIINTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTTFVGK 120 Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187 L+ K+ + + ++ A D +R AAIDQLK + + ++G+D +A + + + Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVRKGLE 178 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 QA+ + D ++IDTAGRL + LM + +R +K L P+ +L V+D+ GQ A Sbjct: 179 QARENRNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQEAAN 232 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 F+ TG+++TK+DG RGG + + P+ F G+GE I D+E F S Sbjct: 233 VAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRMS 292 Query: 308 AVITGCLD 315 + I G D Sbjct: 293 SRILGMGD 300 >gi|216263608|ref|ZP_03435603.1| signal recognition particle protein [Borrelia afzelii ACA-1] gi|215980452|gb|EEC21273.1| signal recognition particle protein [Borrelia afzelii ACA-1] Length = 444 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/276 (30%), Positives = 141/276 (51%), Gaps = 15/276 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF--- 103 E +++ L+ +D+ + V ++ + ++ + +K V V R + S+ I + L K Sbjct: 32 EIIKNSLVDADVNLRVIRRFLNSIIEE--SKGVKVLRGIDPKSQFIKIVNDNLVKFLGGK 89 Query: 104 NWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 N++ S P IL++G+ G GKTT KLS ++ KV+L A DTFR+AA++QLK Sbjct: 90 NYELSLHPVNKQSYILMLGLQGSGKTTTSAKLSLRLKKENRKVLLVAADTFRAAAVEQLK 149 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 I + E D + + K A+++ D +I+DT GRL S+L+ I K+ Sbjct: 150 ILGSQIGVPVFSLEGEKDPIKIVKASMKFAESEFFDSVIVDTRGRLEVESLLVEEIKKIK 209 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 +L+ P + V+D+ GQ A+ + F+ G TG I +K D RGG ++ Sbjct: 210 GILQ------PTETILVVDSMMGQVAVNIAKEFNENVGLTGAIFSKFDSDTRGGAVLSFK 263 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P+ F+GVGE DL+ F + ++ I G D Sbjct: 264 SICAVPIKFVGVGEKPEDLDSFYPERIASRILGMGD 299 >gi|183601839|ref|ZP_02963208.1| signal recognition particle protein [Bifidobacterium animalis subsp. lactis HN019] gi|241190330|ref|YP_002967724.1| signal recognition particle protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195736|ref|YP_002969291.1| signal recognition particle protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218724|gb|EDT89366.1| signal recognition particle protein [Bifidobacterium animalis subsp. lactis HN019] gi|240248722|gb|ACS45662.1| signal recognition particle protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250290|gb|ACS47229.1| signal recognition particle protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793317|gb|ADG32852.1| signal recognition particle protein [Bifidobacterium animalis subsp. lactis V9] Length = 547 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 91/324 (28%), Positives = 155/324 (47%), Gaps = 36/324 (11%) Query: 21 FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F+S + +L + S +L D G E+ L+ +D+ + V + + + + Sbjct: 4 FSSLTDRLSNAFKHLKSKGKLSDADIDGTIREIRRALLDADVSLDVVRSFTARVRDRALS 63 Query: 77 KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +VS Q+V+ V++ + +L + +P N+ + P +I++ G+ G GKTT+ GK Sbjct: 64 TEVSEALNPAQQVVRIVNDELTDILGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 122 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175 L + D+G +L A D R A+ QL++ +R E G Sbjct: 123 LGYWLKDSGHTPLLVAADLQRPNAVTQLEVVGERAGVPVYAPEKGVQSAGGDAVSAPGET 182 Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 D +A ++ + A+ K D +IIDTAGRL + LM + R ++ D P+ VL Sbjct: 183 TGDPVKVARDSIEYARQKMYDTVIIDTAGRLGVDETLM----QQARDIR--DAVQPNEVL 236 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DA TGQ+A+R + F TG++++K+DG RGG + + P+ F GEG Sbjct: 237 FVIDAMTGQDAVRTAQAFDEGVNFTGVVLSKLDGDTRGGAALSVASVTGKPILFASNGEG 296 Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318 + D E F ++ I LD G+ Sbjct: 297 LKDFEVFHPDRMASRI---LDMGD 317 >gi|332024403|gb|EGI64601.1| Signal recognition particle 54 kDa protein [Acromyrmex echinatior] Length = 506 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 106/206 (51%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 RP++I+ VG+ G GKTT KL+ K L DTFR+ A DQ+K A + F Sbjct: 100 RPNIIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQIKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A + + + +++I+DT+GR L +M++V + P Sbjct: 160 YGSYTEVDPVTIAQDGVDMFKKEGYEIIIVDTSGRHKQEESLFE---EMLQVANAVQPD- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DAT GQ Q + F +I+TK+DG A+GGG + V + PV F+ Sbjct: 216 --NIIFVMDATIGQACEAQAKAFKERVNVGSIIITKLDGHAKGGGALSAVAATQSPVIFV 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+DLEPF K F + + G D Sbjct: 274 GTGEHIDDLEPFKTKPFISKLLGMGD 299 >gi|111115526|ref|YP_710144.1| signal recognition particle protein [Borrelia afzelii PKo] gi|110890800|gb|ABH01968.1| signal recognition particle protein [Borrelia afzelii PKo] Length = 444 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/276 (30%), Positives = 141/276 (51%), Gaps = 15/276 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF--- 103 E +++ L+ +D+ + V ++ + ++ + +K V V R + S+ I + L K Sbjct: 32 EIIKNSLVDADVNLRVIRRFLNSIIEE--SKGVKVLRGIDPKSQFIKIVNDNLVKFLGGK 89 Query: 104 NWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 N++ S P IL++G+ G GKTT KLS ++ KV+L A DTFR+AA++QLK Sbjct: 90 NYELSLHPVNKQSYILMLGLQGSGKTTTSAKLSLRLKKENRKVLLVAADTFRAAAVEQLK 149 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 I + E D + + K A+++ D +I+DT GRL S+L+ I K+ Sbjct: 150 ILGSQIGVPVFSLEGEKDPIKIVKASMKFAESEFFDSVIVDTRGRLEVESLLVEEIKKIK 209 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 +L+ P + V+D+ GQ A+ + F+ G TG I +K D RGG ++ Sbjct: 210 GILQ------PTETILVVDSMMGQVAVNIAKEFNENVGLTGAIFSKFDSDTRGGAVLSFK 263 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P+ F+GVGE DL+ F + ++ I G D Sbjct: 264 SICAVPIKFVGVGEKPEDLDSFYPERIASRILGMGD 299 >gi|320096199|ref|ZP_08027787.1| signal recognition particle protein [Actinomyces sp. oral taxon 178 str. F0338] gi|319976864|gb|EFW08619.1| signal recognition particle protein [Actinomyces sp. oral taxon 178 str. F0338] Length = 536 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/278 (30%), Positives = 136/278 (48%), Gaps = 16/278 (5%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRY-AKDVSVQRVLYDVSELIHKMLMPL--SKPFN 104 E+ LI +D+ + V ++ + K Y A V ++H L+ + + Sbjct: 33 EIRRALIDADVALPVVRQFTTRVREKAYGAARSKALNPGQQVVSIVHSELVEILGGQTRE 92 Query: 105 WDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 F+ R P V ++ G+ G GKTT+ GKL K + + G VML A D R A+ QL++ + Sbjct: 93 LVFAERGPTVFMLAGLQGAGKTTLAGKLGKWLREEGKTVMLVASDLQRPNAVQQLQVVGE 152 Query: 164 RTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 R E G+ D +A + A+ ++V+I+DTAGRL + +M + Sbjct: 153 RAGVKVWAPEPGNGVGDPVEVARSGVEFARQSGINVVIVDTAGRLGVDQEMMD------Q 206 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 + D +PH ++ VLDA GQ+A+ F G TG++++K+DG ARGG + + Sbjct: 207 AIAIRDAVSPHEIMFVLDAMVGQDAVSTSTAFRDGVGFTGVVLSKLDGDARGGAALSVRG 266 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 P+ F GEG++D E F A + I LD G+ Sbjct: 267 VTGAPILFASTGEGLDDFERFHADRMAGRI---LDMGD 301 >gi|292670609|ref|ZP_06604035.1| signal recognition particle protein [Selenomonas noxia ATCC 43541] gi|292647775|gb|EFF65747.1| signal recognition particle protein [Selenomonas noxia ATCC 43541] Length = 458 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 93/285 (32%), Positives = 145/285 (50%), Gaps = 14/285 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 ++ ++D +RE + L+ +D+ V + V+ + + +DV + Q V+ V E Sbjct: 23 LTEEDVNDAMRE-VRMALLEADVNFKVVKDFVKRVKERAVGQDVLDTLTAAQAVIKIVDE 81 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + ++ N + P VI++ G+ G GKTT GKL+ + G + +L A D + Sbjct: 82 ELTALMGGTESRLNIS-PNPPTVIMLAGLQGSGKTTSAGKLALMLKKQGKRPLLVADDIY 140 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAI QL++ + V S+ DA A+A A + A DV+IIDTAGRL + Sbjct: 141 RPAAIKQLEVIGAQVDVP-VFSQGQEDAVAIARAAIAYSAAHANDVVIIDTAGRLQIDET 199 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + + +K PH +L V+DA TGQ A+ + F A G G+IMTK+DG A Sbjct: 200 LMQELRDIKAAVK------PHEILLVVDAMTGQEAVNVAQSFDASLGLDGVIMTKLDGDA 253 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I P+ F+G+GE + LE F ++ I G D Sbjct: 254 RGGAALSIKAVTGCPLKFVGMGEKLEPLEVFHPDRMASRILGMGD 298 >gi|110004366|emb|CAK98704.1| probable gtp-binding signal recognition particle srp54-homolog protein [Spiroplasma citri] Length = 452 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/211 (35%), Positives = 117/211 (55%), Gaps = 10/211 (4%) Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRT 165 F+ +P +I++VG+ G GKTT GK++K + K +L A D +R AAI+QLK Sbjct: 96 FASKPTIIMMVGLQGSGKTTTTGKIAKLVEKKYHKKPLLVACDIYRPAAIEQLKTIGKNL 155 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + + V + A +A A+ K DV++IDTAGRLH ++ LM + LK + Sbjct: 156 NIE-VFERGMQNPITTAQQAITYAKDNKNDVILIDTAGRLHIDAELM-------QELKEI 207 Query: 226 DPH-APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 + P +L V+D TGQ+ + F+ + TG+++TK+DG ARGG + I K+ Sbjct: 208 KNNITPDEILLVVDGMTGQDIINVATEFNQLLKLTGVVVTKLDGDARGGAALSITHLTKL 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GEG+++L+ F + I G D Sbjct: 268 PITFIGTGEGMSNLQIFYPDRMADRILGMGD 298 >gi|223932139|ref|ZP_03624143.1| signal recognition particle protein [Streptococcus suis 89/1591] gi|302023761|ref|ZP_07248972.1| signal recognition particle protein [Streptococcus suis 05HAS68] gi|330832793|ref|YP_004401618.1| signal recognition particle protein [Streptococcus suis ST3] gi|223899120|gb|EEF65477.1| signal recognition particle protein [Streptococcus suis 89/1591] gi|329307016|gb|AEB81432.1| signal recognition particle protein [Streptococcus suis ST3] Length = 524 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 109/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++ G+ G GKTT GKL+ K+ + + +L A D +R AAIDQLK + D Sbjct: 101 PTIIMMAGLQGAGKTTFTGKLANKLKQEENARPLLIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAAL--AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 E+G+ AL + +QA+A D ++IDTAGRL + LMA + R +K Sbjct: 159 PVFELGNQVPALEIVRQGLEQAKANHNDYVLIDTAGRLQIDQALMAEL----REIKEF-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+ TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNDQLAITGVILTKIDGDTRGGAALSVRHITGQPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|320450462|ref|YP_004202558.1| signal recognition particle protein [Thermus scotoductus SA-01] gi|320150631|gb|ADW22009.1| signal recognition particle protein [Thermus scotoductus SA-01] Length = 434 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 94/309 (30%), Positives = 144/309 (46%), Gaps = 28/309 (9%) Query: 21 FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 FA + +L+E I + R+ + E+ L+ +D+ + VA+ VE + K Sbjct: 2 FAKLAGRLQEAIDRLRGRGRITEEDLKATLREIRRALMDADVNLEVARAFVESVREKALG 61 Query: 77 KDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 + V + VL V E + + L P K N F +VG+ G GKTT Sbjct: 62 QKVLESLTPAEVVLATVYEALKEALGGEPRFPTLKNQNLWF--------LVGLQGSGKTT 113 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL+ G + +L A DT R AA +QL+I ++ + + G ++ Sbjct: 114 TAAKLALFYKGKGRRPLLVAADTQRPAAREQLRILGEKIGVPVLEVQDGESPESIRRRVE 173 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 ++A+ + D++++DTAGRL + LMA + ++ + P VL VLDA TGQ AL Sbjct: 174 ERARQEVRDLILVDTAGRLQIDEPLMAELARLKEAMN------PDEVLLVLDAMTGQEAL 227 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F G TGLI+TK+DG ARGG + P+YF GV E LE F Sbjct: 228 SVAKAFDERVGVTGLILTKLDGDARGGAALSARHVTGKPIYFAGVSERPEGLELFYPDRL 287 Query: 307 SAVITGCLD 315 ++ I G D Sbjct: 288 ASRILGMGD 296 >gi|254776215|ref|ZP_05217731.1| signal recognition particle protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 517 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 94/311 (30%), Positives = 150/311 (48%), Gaps = 23/311 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + + RL D E+ L+ +D+ + V + V + + Sbjct: 2 FESLSDRLTGALAGLRGKGRLTDADIEATTREIRLALLEADVSLPVVRAFVTRIKERAKG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L ++ + + P VI++ G+ G GKT++ GKL Sbjct: 62 AEVSGALNPAQQVVKIVNEELIGILGGETRQLAFAKTP-PTVIMLAGLQGSGKTSLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184 + + G +L A D R AA++QL++ +R G+ D A+A + Sbjct: 121 AAWLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAQ 180 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 +A+AK DV+I+DTAGRL + LMA IR D P +L VLDA GQ+ Sbjct: 181 GLAEARAKHHDVVIVDTAGRLGIDDELMA-QAAAIR-----DAIDPDEILFVLDAMIGQD 234 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ E F G TG+++TK+DG ARGG + + +P+ F GE + D + F Sbjct: 235 AVTTAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294 Query: 305 DFSAVITGCLD 315 S+ I G D Sbjct: 295 RMSSRILGMGD 305 >gi|31981338|ref|NP_036029.2| signal recognition particle 54 kDa protein [Mus musculus] gi|153791789|ref|NP_001093579.1| signal recognition particle 54 kDa protein [Mus musculus] gi|73622264|sp|P14576|SRP54_MOUSE RecName: Full=Signal recognition particle 54 kDa protein; Short=SRP54 gi|12848354|dbj|BAB27921.1| unnamed protein product [Mus musculus] gi|18043829|gb|AAH19683.1| Signal recognition particle 54a [Mus musculus] gi|74193669|dbj|BAE22786.1| unnamed protein product [Mus musculus] Length = 504 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E ++ + + +++I+DT+GR L +M++V + P Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVSNAIQPD- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D EPF + F + + G D Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299 >gi|325998007|gb|ADZ50215.1| Signal recognition particle protein [Helicobacter pylori 2017] Length = 417 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/270 (29%), Positives = 142/270 (52%), Gaps = 13/270 (4%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 ++ L+++D+ VA+++++++ ++ + Q+ L L +L LS + F+ Sbjct: 1 MKKTLLKNDVHHKVARELLKKVESQTKLSGIGKQQFL---DALEKSLLEILSAKGSSGFT 57 Query: 109 HR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 P V+L+ G+ G GKTT KL+ + KV+L A D R AA++QLK+ ++ Sbjct: 58 FAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQV 117 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + V E +A A K+A+ + DVL++D+AGRL + LM + ++ VL Sbjct: 118 GVE-VFHEENKSVKEIANNALKRAKEAQFDVLLVDSAGRLAIDKELMQELKEVKEVLN-- 174 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 PH VL V DA +GQ+ ++ F+ G +G++++K D ++GG + I +P Sbjct: 175 ----PHEVLYVADALSGQDGVKSANTFNEEIGVSGVVLSKFDSDSKGGIALGITYQLGLP 230 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F+G GE I DL+ FV + + G D Sbjct: 231 LRFIGSGEKIPDLDVFVPERIVGRLMGAGD 260 >gi|268611752|ref|ZP_06145479.1| signal recognition particle protein [Ruminococcus flavefaciens FD-1] Length = 460 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/235 (34%), Positives = 129/235 (54%), Gaps = 10/235 (4%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 Q+V+ V+E + ++ + N+ S P VI++ G+ G GKTT KL+K + G + Sbjct: 73 QQVIKIVNEELVTLMGDSNARINF-ASKPPTVIMMCGLQGSGKTTHAAKLAKLLKKEGHR 131 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIID 200 +LAA D +R AAIDQL++ + AD E+G D +A +A A+ DVLIID Sbjct: 132 PLLAACDVYRPAAIDQLQVVGQK--ADVKVFEMGQIDPVVIAKQALAHAKDYGHDVLIID 189 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRLH + LM ++K + P ++ V+DA TGQ+A+ + F G T Sbjct: 190 TAGRLHIDEALMD------ELVKIKEETQPTEIMLVVDAMTGQDAVNVAKAFDDAVGITS 243 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ++M+K+D RGG + ++ P+ F+G+GE ++D E F + ++ I G D Sbjct: 244 VLMSKLDSDTRGGAALSVLAVTGKPIKFVGMGEKLDDFEQFHPERMASRILGMGD 298 >gi|255513535|gb|EET89801.1| signal recognition particle-docking protein FtsY [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 370 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 69/196 (35%), Positives = 110/196 (56%), Gaps = 7/196 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P IL +G NG GKTT I K++ K+ + +++A DTFR+AAI+Q + A A+ + Sbjct: 174 PVKILFLGPNGTGKTTTIAKVAYKLKKMNIPTVISASDTFRAAAIEQTEYHAKAVGAEVI 233 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 S G+D A++A++A A++ + ++IDTAGR N L++ + K++RV++ P Sbjct: 234 KSGYGADPASVAFDAINYARSHGMPAVLIDTAGRQETNKNLLSEMQKIVRVVQ------P 287 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 L V ++T G Q++ G+I+TK+D A+GG +I I T IPV LG Sbjct: 288 DITLFVGESTAGSIIAEQIKELSKAIKIDGIILTKIDCDAKGGSVISIADTTGIPVLLLG 347 Query: 291 VGEGINDLEPFVAKDF 306 GE L + + DF Sbjct: 348 SGESYEALSKY-SNDF 362 >gi|193580274|ref|XP_001951515.1| PREDICTED: signal recognition particle 54 kDa protein-like isoform 1 [Acyrthosiphon pisum] gi|328716940|ref|XP_003246080.1| PREDICTED: signal recognition particle 54 kDa protein-like isoform 2 [Acyrthosiphon pisum] Length = 504 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/287 (28%), Positives = 137/287 (47%), Gaps = 26/287 (9%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL------------- 91 + EE+ + +++ DI A+ + V +L K+ ++V R + D E+ Sbjct: 23 INEEVLNSMLK-DICAALLEANVNVMLVKKLRENV---RNVIDFDEMAGGLNKRRMIQSA 78 Query: 92 IHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 + K L+ L P + RP++I+ VG+ G GKTT KL+ K L D Sbjct: 79 VFKELVKLVDPGVKSYQPVKGRPNIIMFVGLQGSGKTTTCTKLAYYYLKKNWKTCLVCAD 138 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+ A DQLK A + F S D +A + + + +++++DT+GR Sbjct: 139 TFRAGAYDQLKQNATKAQIPFYGSYTEVDPVVIAQDGVDMFKKEGFEIIVVDTSGRHKQE 198 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 + L + ++ +K P +++ V+DAT GQ Q F +++TK+DG Sbjct: 199 ASLFEEMLQVSNTIK------PDNIVFVMDATIGQACEGQARAFKDKVNIGSVVITKLDG 252 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 A+GGG + V K P+ F+G GE I+D EPF K F + + G D Sbjct: 253 HAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTKPFVSKLLGMGD 299 >gi|41409081|ref|NP_961917.1| hypothetical protein MAP2983c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397440|gb|AAS05300.1| Ffh [Mycobacterium avium subsp. paratuberculosis K-10] Length = 517 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 94/311 (30%), Positives = 150/311 (48%), Gaps = 23/311 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + + RL D E+ L+ +D+ + V + V + + Sbjct: 2 FESLSDRLTGALAGLRGKGRLTDADIEATTREIRLALLEADVSLPVVRAFVTRIKERAKG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L ++ + + P VI++ G+ G GKT++ GKL Sbjct: 62 AEVSGALNPAQQVVKIVNEELIGILGGETRQLAFAKTP-PTVIMLAGLQGSGKTSLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184 + + G +L A D R AA++QL++ +R G+ D A+A + Sbjct: 121 AAWLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAQ 180 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 +A+AK DV+I+DTAGRL + LMA IR D P +L VLDA GQ+ Sbjct: 181 GLAEARAKHHDVVIVDTAGRLGIDDELMA-QAAAIR-----DAIDPDEILFVLDAMIGQD 234 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ E F G TG+++TK+DG ARGG + + +P+ F GE + D + F Sbjct: 235 AVTTAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294 Query: 305 DFSAVITGCLD 315 S+ I G D Sbjct: 295 RMSSRILGMGD 305 >gi|167761983|ref|ZP_02434110.1| hypothetical protein BACSTE_00328 [Bacteroides stercoris ATCC 43183] gi|167700215|gb|EDS16794.1| hypothetical protein BACSTE_00328 [Bacteroides stercoris ATCC 43183] Length = 440 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/265 (29%), Positives = 140/265 (52%), Gaps = 13/265 (4%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99 V E L+D+ L+ +D+ VA+ + + K ++V + + + +++H L L Sbjct: 26 NVAETLKDVRKALLDADVNYKVAKSFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQL 85 Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156 + + +P VIL+ G+ G GKTT GKL++ + + K +L A D +R AAI+ Sbjct: 86 MGGETAEINIDSKPAVILMSGLQGSGKTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIE 145 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL++ A++ D ++A A ++A+AK D++I+DTAGRL + +M I Sbjct: 146 QLRVLAEQIEVPMYSEPDSKDPVSIAQNAIQEAKAKGYDLVIVDTAGRLAVDEEMMNEIA 205 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + + P+ +L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + Sbjct: 206 AIKSAIN------PNEILFVVDSMTGQDAVNTAKEFNERLDFNGVVLTKLDGDTRGGAAL 259 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301 I P+ F+G GE ++ ++ F Sbjct: 260 SIRTVVNKPIKFVGTGEKLDAIDQF 284 >gi|29829190|ref|NP_823824.1| signal recognition particle [Streptomyces avermitilis MA-4680] gi|29606296|dbj|BAC70359.1| putative signal recognition particle, subunit SRP54 [Streptomyces avermitilis MA-4680] Length = 516 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/267 (30%), Positives = 136/267 (50%), Gaps = 15/267 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + ++ + + +VS Q+VL V+E + +L Sbjct: 28 DATAREIRIALLEADVALPVVRTFIKNVKERALGSEVSKALNPAQQVLKIVNEELVTILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + P VI++ G+ G GKTT+ GKL K + D G +L A D R A++Q Sbjct: 88 GETRRLRF-AKNPPTVIMLAGLQGAGKTTLAGKLGKHLKDQGHSPILVAADLQRPNAVNQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R E G+ D +A ++ + A+ K D++I+DTAGRL + LM Sbjct: 147 LSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEFAKTKVHDIVIVDTAGRLGIDQELMQQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P +L V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301 + I P+ F GE ++D + F Sbjct: 261 ALSIASVTGKPIMFASNGEKLDDFDAF 287 >gi|15806836|ref|NP_295559.1| signal recognition particle protein [Deinococcus radiodurans R1] gi|6459616|gb|AAF11391.1|AE002024_2 signal recognition particle protein [Deinococcus radiodurans R1] Length = 452 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 93/307 (30%), Positives = 146/307 (47%), Gaps = 23/307 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S KL++ + + R+L + V+ + ++ L+ +D+ VA+ V + + Sbjct: 2 FESLGNKLQDILEKLGRERQLTEAQVKASMREIRMALLEADVNFGVAKDFVARVSEQAVG 61 Query: 77 KDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + V +V ++++D EL+ + ++P + +V +VG+ G GKTT Sbjct: 62 QQVLGSLNAGQTVIKLVHD--ELVQTLGGESAQP---SLDKKNNVWFMVGLQGAGKTTSS 116 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ G KV+L A DT R AA DQL++ + + + G A + Sbjct: 117 GKLAAHYKKLGRKVLLVAADTQRPAARDQLEVLSKQVGVPVLKVNDGESPAETKARIEEH 176 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 D++I+DTAGRL + LM + + L+ P L V+DA TGQ AL Sbjct: 177 LARDPRDLVIVDTAGRLQIDEGLMNQLAALKAELQ------PTETLLVVDAMTGQEALNV 230 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F G +GLIMTKMDG ARGG + P+YF GV E ++ LEPF + Sbjct: 231 AQAFDERIGVSGLIMTKMDGDARGGAALSARSVTGKPIYFAGVSEKLSGLEPFYPDRVAG 290 Query: 309 VITGCLD 315 I G D Sbjct: 291 RILGMGD 297 >gi|227833413|ref|YP_002835120.1| signal recognition particle protein [Corynebacterium aurimucosum ATCC 700975] gi|262184401|ref|ZP_06043822.1| signal recognition particle protein [Corynebacterium aurimucosum ATCC 700975] gi|227454429|gb|ACP33182.1| signal recognition particle protein [Corynebacterium aurimucosum ATCC 700975] Length = 531 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 92/318 (28%), Positives = 154/318 (48%), Gaps = 30/318 (9%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L+ ++ + +L + E+ L+ +D+ + V + ++ + + Sbjct: 2 FESLSDRLQSALSGLRGKGKLTEADINATAREIRLALLEADVSLNVVRGFIKRIKERAAG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + ++L ++ N + P VI++ G+ G GKTT+ GKL Sbjct: 62 AEVSEALNPAQQVVKIVNEELIEILGGETRRLNL-AKNPPTVIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--------------D 177 SK ++ G ML A D R A+ QL+I +R D + G+ D Sbjct: 121 SKHLAAKGHTPMLVACDLQRPGAVQQLQIVGERAGVDVYAPDPGTSLDSHEHEMGTSHGD 180 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 +A ++A+ + D++IIDTAGRL + LM + IR D P VL V+ Sbjct: 181 PVDVAKRGIEEAKRTQHDIVIIDTAGRLGIDETLMT-QARNIR-----DAVNPDEVLFVI 234 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 D+ GQ+A++ E F TG+++TK+DG ARGG + I P+ F GE + D Sbjct: 235 DSMIGQDAVQTAEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPIMFASTGEKLED 294 Query: 298 LEPFVAKDFSAVITGCLD 315 + F + S+ I G D Sbjct: 295 FDVFHPERMSSRILGMGD 312 >gi|329955639|ref|ZP_08296547.1| signal recognition particle protein [Bacteroides clarus YIT 12056] gi|328526042|gb|EGF53066.1| signal recognition particle protein [Bacteroides clarus YIT 12056] Length = 440 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/265 (29%), Positives = 140/265 (52%), Gaps = 13/265 (4%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99 V E L+D+ L+ +D+ VA+ + + K ++V + + + +++H L L Sbjct: 26 NVAETLKDVRKALLDADVNYKVAKSFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQL 85 Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156 + + +P VIL+ G+ G GKTT GKL++ + + K +L A D +R AAI+ Sbjct: 86 MGGETAEINIDSKPAVILMSGLQGSGKTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIE 145 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL++ A++ D A+A A ++A+AK D++I+DTAGRL + +M I Sbjct: 146 QLRVLAEQIEVPMYSEPDSKDPVAIAQNAIQEAKAKGYDLVIVDTAGRLAVDEEMMNEIA 205 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + + P+ +L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + Sbjct: 206 AIKAAIN------PNEILFVVDSMTGQDAVNTAKEFNERLDFNGVVLTKLDGDTRGGAAL 259 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301 I P+ F+G GE ++ ++ F Sbjct: 260 SIRSVVNKPIKFVGTGEKLDAIDQF 284 >gi|126658775|ref|ZP_01729919.1| signal recognition particle protein [Cyanothece sp. CCY0110] gi|126619873|gb|EAZ90598.1| signal recognition particle protein [Cyanothece sp. CCY0110] Length = 488 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 88/281 (31%), Positives = 142/281 (50%), Gaps = 29/281 (10%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85 D I+ + D ++E + L+ +D+ + V + + ++ +V + +++ Sbjct: 20 DKITEANMQDALKE-VRRALLEADVNLQVVKTFIADVEKAAIGAEVIAGVNPGQQLIKIV 78 Query: 86 YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 YD EL+ M +PL++ N P VIL+ G+ G GKTT KL+ + Sbjct: 79 YD--ELVKVMGESNVPLAQAENA-----PTVILMAGLQGTGKTTATAKLALYLRKQQRSA 131 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIID 200 ++ A D +R AAIDQL ++ D E+G+ A +A + ++A+ +D +IID Sbjct: 132 LMVATDIYRPAAIDQLITLGEQI--DVPVFELGNQANPVDIATQGVEKAKEMGIDTVIID 189 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL + +M ++ RV K ++P L V+DA TGQ A FH G TG Sbjct: 190 TAGRLQIDEEMML---ELSRVKKAVNPD---DTLLVVDAMTGQEAANLTRTFHDQIGVTG 243 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 I+TKMDG RGG + + P+ F+GVGE + L+PF Sbjct: 244 AILTKMDGDTRGGAALSVRQISGQPIKFVGVGEKVEALQPF 284 >gi|300728157|ref|ZP_07061528.1| signal recognition particle protein [Prevotella bryantii B14] gi|299774583|gb|EFI71204.1| signal recognition particle protein [Prevotella bryantii B14] Length = 449 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 92/285 (32%), Positives = 136/285 (47%), Gaps = 25/285 (8%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHK 94 V E ++D+ L+ +D+ VA+ T R + Q VL VS +L+H Sbjct: 26 NVAETMKDIRRALLDADVNFKVAKD-----FTNRVKEKALGQNVLTAVSPGQMLVKLVHD 80 Query: 95 MLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFR 151 L L + RP +IL+ G+ G GKTT GKL+ + K +L A D +R Sbjct: 81 ELAELMGGESVPMKLEGRPAIILMSGLQGSGKTTFSGKLANLLKAKQHKNPLLVACDVYR 140 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 AAIDQLK+ + C D ++A A ++A+AK DV+IIDTAGRL + + Sbjct: 141 PAAIDQLKVVGESVGVPVYCEPENKDVLSIADHALQEAKAKSHDVVIIDTAGRLAIDEQM 200 Query: 212 MAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 M I L H P L V+D+ TGQ+A+ + F+ G+++TK+DG Sbjct: 201 MTEIS-------NLKNHVHPDETLFVVDSMTGQDAVNTAKEFNERLDFDGVVLTKLDGDT 253 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I P+ F+G GE + L+ F + I G D Sbjct: 254 RGGAALSIRTVVDKPIKFIGTGEKMEALDVFHPSRMADRILGMGD 298 >gi|104783234|ref|YP_609732.1| GTP-binding signal recognition particle protein [Pseudomonas entomophila L48] gi|95112221|emb|CAK16948.1| 4.5S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNA [Pseudomonas entomophila L48] Length = 458 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 93/306 (30%), Positives = 156/306 (50%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSI--KERA 59 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N + + P V+L+ G+ G GKTT GK Sbjct: 60 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEELTLNAAPPAVVLMAGLQGAGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL+ A+ F S+I A+A A ++A Sbjct: 120 LARHLKERKKKSVMVVSADVYRPAAIKQLETLANDIGVTFFPSDISQKPVAIAEAAIREA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K +DV+I+DTAGRLH ++ +M I + +K P L V+DA TGQ+A Sbjct: 180 KLKFIDVVIVDTAGRLHVDADMMDEIKALHAAVK------PIETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+++TK+DG ARGG + + P+ F+G+GE LEPF ++ Sbjct: 234 KAFGDALPLTGVVLTKVDGDARGGAALSVRAITGKPIKFIGMGEKTEALEPFHPDRIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|160892009|ref|ZP_02073012.1| hypothetical protein BACUNI_04468 [Bacteroides uniformis ATCC 8492] gi|270296343|ref|ZP_06202543.1| signal recognition particle protein [Bacteroides sp. D20] gi|317480461|ref|ZP_07939556.1| signal recognition particle protein [Bacteroides sp. 4_1_36] gi|156858487|gb|EDO51918.1| hypothetical protein BACUNI_04468 [Bacteroides uniformis ATCC 8492] gi|270273747|gb|EFA19609.1| signal recognition particle protein [Bacteroides sp. D20] gi|316903376|gb|EFV25235.1| signal recognition particle protein [Bacteroides sp. 4_1_36] Length = 440 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/267 (29%), Positives = 141/267 (52%), Gaps = 17/267 (6%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKM 95 V E L+D+ L+ +D+ VA+ + + K ++V Q ++ V + + ++ Sbjct: 26 NVAETLKDVRKALLDADVNYKVAKNFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQL 85 Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAA 154 + + N D +P +IL+ G+ G GKTT GKL++ + S K +L A D +R AA Sbjct: 86 MGGETSEINLD--SKPAIILMSGLQGSGKTTFSGKLARMLKSKKNKKPLLVACDVYRPAA 143 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 I+QL++ A++ + A+A A ++A+AK D++I+DTAGRL + +M Sbjct: 144 IEQLRVLAEQIDVPMYSEPDSKNPVAIAQNAIQEAKAKGYDLVIVDTAGRLAVDEEMMNE 203 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 I + + + P +L V+D+ TGQ+A+ + F+ G+++TK+DG RGG Sbjct: 204 IAAIKKAIN------PDEILFVVDSMTGQDAVNTAKEFNERLDFNGVVLTKLDGDTRGGA 257 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301 + I P+ F+G GE ++ ++ F Sbjct: 258 ALSIRSVVNKPIKFVGTGEKLDAIDQF 284 >gi|110639137|ref|YP_679346.1| signal recognition particle subunit FFH/SRP54 [Cytophaga hutchinsonii ATCC 33406] gi|110281818|gb|ABG60004.1| signal recognition particle subunit FFH/SRP54 (srp54) [Cytophaga hutchinsonii ATCC 33406] Length = 443 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/278 (29%), Positives = 141/278 (50%), Gaps = 21/278 (7%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR-VLYDVS------ELIHKMLMPL 99 +E+ LI +D+ VA+ + +++ K++++ R VL VS ++ H+ L L Sbjct: 32 KEIRKALIDADVNYKVAKSVTDDI------KEIALGREVLISVSPGQLLVKITHEELTKL 85 Query: 100 SKPFNWDFSHR--PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 + S + P VIL+ G+ G GKTT GKL+ + V+L A D +R AAIDQ Sbjct: 86 MGGEKQEISLKGDPSVILIAGLQGSGKTTFSGKLAAYIKKQNRNVLLVACDVYRPAAIDQ 145 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 LK+ ++ + ++ A + A+ V+IIDTAGRL + +M I + Sbjct: 146 LKVLGEQVGVEVYTEPDNKKPVEISKNAIEYAKKNNKKVVIIDTAGRLAIDEQMMNEIAE 205 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + + ++ P L V+D+ TGQ+A+ + F+ G+++TK+DG RGG I Sbjct: 206 VKKAIQ------PSETLFVVDSMTGQDAVNTAKAFNDRINFDGVVLTKLDGDTRGGAAIS 259 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I + P+ F+ GE ++ L+ F + ++ I G D Sbjct: 260 IRAVVEKPIKFISTGEKMDALDVFYPERMASRILGMGD 297 >gi|296139328|ref|YP_003646571.1| signal recognition particle protein [Tsukamurella paurometabola DSM 20162] gi|296027462|gb|ADG78232.1| signal recognition particle protein [Tsukamurella paurometabola DSM 20162] Length = 522 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 98/317 (30%), Positives = 154/317 (48%), Gaps = 29/317 (9%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L ++ + RL D E+ L+ +D+ + V + V + + Sbjct: 2 FESLSDRLGGALSGLRGKGRLTDADIDATAREIRLALLEADVALPVVRAFVSRIKERAKG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+++ V+E + +L ++ N + P VI++ G+ G GKTT+ GKL Sbjct: 62 AEVSAALNPAQQIVKIVNEELVGILGGETRRINLAKTP-PTVIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR----TSADFVCSEIG---------SDA 178 + + G ML A D R A+DQLKI +R T A + +G +D Sbjct: 121 AHHLKKQGHTPMLVACDLQRPGAVDQLKIVGERAGVPTYAPHPGTSVGGEGTLGVSAADP 180 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 +A ++A+AK+ DV+I+DTAGRL + LM G + IR D P VL VLD Sbjct: 181 VEVARGGIEEAKAKQHDVVIVDTAGRLGIDEELM-GQARAIR-----DAVDPDEVLFVLD 234 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A GQ+A+ + F TG+++TK+DG ARGG + + P+ F GE ++D Sbjct: 235 AMIGQDAVTTAQAFAEGVDFTGVVLTKLDGDARGGAALSVREITGKPILFASTGEKLDDF 294 Query: 299 EPFVAKDFSAVITGCLD 315 + F S+ I G D Sbjct: 295 DVFHPDRMSSRILGMGD 311 >gi|160880541|ref|YP_001559509.1| signal recognition particle protein [Clostridium phytofermentans ISDg] gi|160429207|gb|ABX42770.1| signal recognition particle protein [Clostridium phytofermentans ISDg] Length = 454 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 90/304 (29%), Positives = 149/304 (49%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ ++ +L + E++ L+ +D+ V + V + + Sbjct: 3 FESLSEKLQNVFKNLRGKGKLSEADVKLALREVKMALLEADVNFKVVKNFVNSVQERAIG 62 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V Q V+ V+E + K++ + VI++ G+ G GKTT I KL Sbjct: 63 QEVMTSLTPGQMVVKIVNEEMVKLMGDETTELTLKPGSEITVIMMCGLQGAGKTTTIAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K G K +L A D +R AA+DQL+I ++ +A A + A Sbjct: 123 AGKFKAKGKKPLLVACDIYRPAAVDQLQINGEKQGVPVFAMGTNHKPVNIAKAAMEHAAK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +++IIDTAGRLH + +M ++I + + + H H +L V DA TGQ+A+ E Sbjct: 183 NGNNIVIIDTAGRLHIDEDMM---DELIEIKENI--HIDHVILTV-DAMTGQDAVNVAET 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G TG+I+TK+DG RGG + I P+ ++G+GE ++DLE F ++ I Sbjct: 237 FNEKIGITGVILTKLDGDTRGGAALSIRAVTGKPILYIGMGEKLSDLEQFYPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|76788737|ref|YP_327823.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia trachomatis A/HAR-13] gi|237804374|ref|YP_002888528.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia trachomatis B/TZ1A828/OT] gi|76167267|gb|AAX50275.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia trachomatis A/HAR-13] gi|231272674|emb|CAX09577.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia trachomatis B/TZ1A828/OT] Length = 448 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 112/204 (54%), Gaps = 9/204 (4%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P VIL+ G+ G GKTT KL+ KV++A+ D R +A++QL+ +T AD Sbjct: 99 PAVILLCGLQGAGKTTTCAKLADYFLREKKAKKVLVASCDLKRFSAVEQLEGLVKQTGAD 158 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 F E G+D +A EA + A+++ D++++DTAGRLH + LM + + RV Sbjct: 159 FFRRE-GNDPVDMAAEAVQHAKSQGYDLVLVDTAGRLHVDDALMDELVAIARV------T 211 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 +P+ L V++ GQ+A+ + F G TG++++ DG AR G ++ + P+ F Sbjct: 212 SPYETLFVMNLAMGQDAVVTAKAFDERLGLTGVVVSMADGDARAGAVLSVKSLLNKPIKF 271 Query: 289 LGVGEGINDLEPFVAKDFSAVITG 312 G GE I DL PF A+ + I G Sbjct: 272 EGCGEKIKDLRPFNAQSMAERILG 295 >gi|197284282|ref|YP_002150154.1| signal recognition particle protein [Proteus mirabilis HI4320] gi|227357814|ref|ZP_03842162.1| signal recognition particle protein [Proteus mirabilis ATCC 29906] gi|194681769|emb|CAR40980.1| signal recognition particle protein [Proteus mirabilis HI4320] gi|227161924|gb|EEI46942.1| signal recognition particle protein [Proteus mirabilis ATCC 29906] Length = 453 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 95/306 (31%), Positives = 153/306 (50%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + +I RL ++ +++ L ++ L+ +D+ + V ++ + + K A Sbjct: 2 FENLSDRLSRTLRNISGRGRLTEENIKDTLREVRMALLEADVALPVVREFIARV--KESA 59 Query: 77 KDVSVQRVLYDVSE---LIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGK 130 V + L E ++ L+ N D + P V+L+ G+ G GKTT + K Sbjct: 60 VGHEVNKSLTPGQEFVKIVQNELVNAMGEVNNDLDLSAQPPAVVLMAGLQGAGKTTSVAK 119 Query: 131 LSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + K +L + D +R AAI QL+ A+ DF S + + +A A K A Sbjct: 120 LGKFLKEKKKKKVLVVSADVYRPAAIKQLETLAETVGVDFFPSTVQENPVTIASNALKHA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 Q + DVL++DTAGRLH + +M I + + + P L V+DA TGQ+A Sbjct: 180 QLQFYDVLLVDTAGRLHVDEGMMEEIQLLHKAIN------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF ++ Sbjct: 234 KAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|257216394|emb|CAX82402.1| Signal recognition particle 54 kDa protein [Schistosoma japonicum] Length = 461 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/196 (34%), Positives = 103/196 (52%), Gaps = 6/196 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P+VI++VG+ G GKTT KL+ G K + DTFR+ A DQLK A + F Sbjct: 101 PNVIMLVGLQGCGKTTTATKLAYFYQRKGWKTCMICADTFRAGAFDQLKQNATKARIPFY 160 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 S +D +A + ++ +K +++I+DT+GR L +M++V ++ P Sbjct: 161 GSYTETDPVVIARDGVQKFVEEKFEIIIVDTSGRHRQEDSLFE---EMLQVSNAIE---P 214 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 V+ VLDA+ GQ Q F A + +I+TK+DG A+GGG + V P+ F+G Sbjct: 215 DHVIYVLDASIGQACEAQASAFKAKVDVSSVIVTKLDGHAKGGGALSAVAATHSPITFIG 274 Query: 291 VGEGINDLEPFVAKDF 306 GE + D E F + F Sbjct: 275 TGEHVEDFEQFRVQPF 290 >gi|253578963|ref|ZP_04856234.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849906|gb|EES77865.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 451 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 92/313 (29%), Positives = 152/313 (48%), Gaps = 33/313 (10%) Query: 21 FASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEELLTKRYAKDV 79 F S + KL+ + S RL + ED+ L ++ +A+ + V + K++ K V Sbjct: 3 FESLTDKLQNVFKKLRSKGRLTE------EDVKLALKEVKMALLEADVNFKVVKQFTKSV 56 Query: 80 SVQRVLYDVS----------ELIHKMLMPLSKPFNWDFSHRP----HVILVVGVNGVGKT 125 Q + DV ++++ L+ L D RP V ++ G+ G GKT Sbjct: 57 QEQAIGQDVMSGLNPGQMVIKIVNDELVKLMGSETTDLPLRPGNEITVFMMAGLQGAGKT 116 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T + KL+ K+ G K +L A D +R AAI QL++ ++ + +A A Sbjct: 117 TTVAKLAGKLKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGDKQKPVDIAKAA 176 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILM---AGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 + A+A + +V++IDTAGRLH + +M A I I+V + + ++DA TG Sbjct: 177 IEHAKANQQNVVLIDTAGRLHVDEDMMQELADIKANIQV---------DATILIVDAMTG 227 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 Q+A+ F G G+I+TKMDG RGG + I P+ ++G+GE ++DLE F Sbjct: 228 QDAVNVASTFADKVGIDGVILTKMDGDTRGGAALSIKAVTGKPILYVGMGEKLSDLEQFY 287 Query: 303 AKDFSAVITGCLD 315 + ++ I G D Sbjct: 288 PERMASRILGMGD 300 >gi|193222405|emb|CAL62893.2| Signal recognition particle protein (Fifty-four homolog) [Herminiimonas arsenicoxydans] Length = 455 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 110/207 (53%), Gaps = 8/207 (3%) Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAA 154 L P + N+ + P +IL+ G+ G GKTT +GKL+K + + K V+ + D +R AA Sbjct: 90 LGPEASQLNF-ATQPPAIILMAGLQGAGKTTTVGKLAKYLREQKKKKVLTVSADVYRPAA 148 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 I QLK ++ ADF SEI +A A A+ DVLIIDTAGRL + +M Sbjct: 149 IGQLKTVTEQVGADFFPSEITDKPVDIALAALDYAKRHYHDVLIIDTAGRLGIDEAMMQE 208 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 I + +K P L V+DA GQ+A+ + F TG+++TK+DG +RGG Sbjct: 209 ISAIHAAVK------PIETLFVVDAMLGQDAINTAKAFSDALPLTGIVLTKLDGDSRGGA 262 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301 + + P+ F GV E ++ LE F Sbjct: 263 ALSVRHITGKPIKFAGVAEKLDGLEAF 289 >gi|255010648|ref|ZP_05282774.1| signal recognition particle protein [Bacteroides fragilis 3_1_12] gi|313148460|ref|ZP_07810653.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313137227|gb|EFR54587.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 439 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 146/266 (54%), Gaps = 15/266 (5%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99 V E L+D+ L+ +D+ VA+ + + K ++V + + + +++H L L Sbjct: 26 NVAETLKDVRKALLDADVNYKVAKGFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQL 85 Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156 + D +P VIL+ G+ G GKTT GKL++ + + + +L A D +R AAI+ Sbjct: 86 MGGETVEIDTKGQPAVILMSGLQGSGKTTFSGKLARMLKTKKNKRPLLVACDVYRPAAIE 145 Query: 157 QLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 QL++ A++ + SEI S D A+A A K+A+AK D++I+DTAGRL + +M I Sbjct: 146 QLRVLAEQIDVP-MYSEIDSKDPVAIAQNAIKEARAKGYDLVIVDTAGRLAVDEQMMNEI 204 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 + ++ P+ +L V+D+ TGQ+A+ + F+ G+++TK+DG RGG Sbjct: 205 AAIKEAIQ------PNEILFVVDSMTGQDAVNTAKEFNERLDFDGVVLTKLDGDTRGGAA 258 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPF 301 + I P+ F+G GE ++ ++ F Sbjct: 259 LSIRSVVNKPIKFVGTGEKLDAIDQF 284 >gi|296135007|ref|YP_003642249.1| signal recognition particle protein [Thiomonas intermedia K12] gi|295795129|gb|ADG29919.1| signal recognition particle protein [Thiomonas intermedia K12] Length = 449 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/215 (33%), Positives = 112/215 (52%), Gaps = 8/215 (3%) Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKI 160 P N + P ++L+ G+ G GKTT KL++ +++ KV+ + D +R AAI QL+ Sbjct: 92 PINL-ATQPPAIVLMAGLQGAGKTTTTAKLARLLTERQKKKVLTVSCDVYRPAAIAQLQT 150 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 + A+F S +A A + A++ DVL++DTAGRL + +M I ++ Sbjct: 151 VTAQAGAEFFPSSPDDKPLDIARRAVEFARSHHFDVLLVDTAGRLSVDEAMMREIKELHA 210 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 LK P L V+DA GQ+A+ FH TG+++TK+DG ARGG + + Sbjct: 211 ALK------PIETLFVVDAMQGQDAVNTARAFHDTLPLTGIVLTKLDGDARGGAALSVRQ 264 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F GV E I+ LEPF + + I G D Sbjct: 265 VTGAPIKFAGVSEKIDGLEPFDPRRMADRILGMGD 299 >gi|288924926|ref|ZP_06418862.1| signal recognition particle protein [Prevotella buccae D17] gi|288338116|gb|EFC76466.1| signal recognition particle protein [Prevotella buccae D17] Length = 447 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 69/196 (35%), Positives = 106/196 (54%), Gaps = 7/196 (3%) Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRT 165 +RP +IL+ G+ G GKTT GKL+ + K +L A D +R AAIDQLK+ ++ Sbjct: 95 LKNRPAIILMSGLQGSGKTTFSGKLANMLKTKEHKNPLLVACDVYRPAAIDQLKVVGEQV 154 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 D A+A A K+A+AK DV+IIDTAGRL + +M I + + + Sbjct: 155 GVPVYAEPDNKDVIAIAANALKEAKAKNYDVVIIDTAGRLAVDEQMMTEISNLKQAV--- 211 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 +P L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + I P Sbjct: 212 ---SPDETLFVVDSMTGQDAVNTAKEFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVTKP 268 Query: 286 VYFLGVGEGINDLEPF 301 + F+G GE + ++ F Sbjct: 269 IKFIGTGEKMEAIDVF 284 >gi|227504770|ref|ZP_03934819.1| signal recognition particle protein [Corynebacterium striatum ATCC 6940] gi|227198620|gb|EEI78668.1| signal recognition particle protein [Corynebacterium striatum ATCC 6940] Length = 541 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 88/282 (31%), Positives = 143/282 (50%), Gaps = 26/282 (9%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + V + ++ + + +VS Q+V+ V+E + +L ++ + Sbjct: 38 LLEADVSLTVVRAFIKRIKERAAGAEVSEALNPAQQVIKIVNEELVDILGGETRRLQF-A 96 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164 + P VI++ G+ G GKTT+ GKL+K +S G ML A D R A+ QL+I +R Sbjct: 97 KNPPTVIMLAGLQGAGKTTLAGKLAKHLSKQGHTPMLVACDLQRPGAVQQLQIVGERAEV 156 Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 TS D E+G+ D A+A ++A+ + D++IIDTAGRL + LM Sbjct: 157 AVFAPDPGTSIDSHEHEMGTSHGDPVAVAQAGIEEAKRSQHDIVIIDTAGRLGIDETLMT 216 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + IR D P VL V+D+ GQ+A++ E F TG+++TK+DG ARGG Sbjct: 217 Q-ARNIR-----DAVNPDEVLFVIDSMIGQDAVQTAEAFRDGVDFTGVVLTKLDGDARGG 270 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F GE + D + F + ++ I G D Sbjct: 271 AALSIREVTGKPIMFASTGEKLQDFDVFHPERMASRILGMGD 312 >gi|148549466|ref|YP_001269568.1| signal recognition particle protein [Pseudomonas putida F1] gi|148513524|gb|ABQ80384.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pseudomonas putida F1] gi|313500314|gb|ADR61680.1| Ffh [Pseudomonas putida BIRD-1] Length = 458 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 94/306 (30%), Positives = 156/306 (50%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KDRA 59 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N D + P V+L+ G+ G GKTT GK Sbjct: 60 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLALNAAPPAVVLMAGLQGAGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL+ A+ F S+I A+A A ++A Sbjct: 120 LARFLKERKKKSVMVVSADVYRPAAIKQLETLANDIGVTFFPSDISQKPVAIAEAAIREA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K +DV+I+DTAGRLH ++ +M I + +K P L V+DA TGQ+A Sbjct: 180 KLKFIDVVIVDTAGRLHIDADMMDEIKALHAAVK------PIETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+++TK+DG ARGG + + P+ F+G+GE LEPF ++ Sbjct: 234 KAFGEALPLTGVVLTKVDGDARGGAALSVRAITGKPIKFIGMGEKTEALEPFHPDRVASR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|308799976|ref|XP_003074769.1| SrrA undefined product (IC) [Ostreococcus tauri] gi|116061309|emb|CAL52027.1| SrrA undefined product (IC) [Ostreococcus tauri] Length = 502 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 95/324 (29%), Positives = 149/324 (45%), Gaps = 50/324 (15%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVRE---ELEDLLIRSDIGVAVA 63 A E W R+L F+ +L + E D VR + L++ ++ V+ Sbjct: 194 AGEFAGWCRRL---FSMGTLTIHE------------DSVRSIMFSFKKKLMKRNVTSEVS 238 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-----LSKPFNWDFSH--------R 110 +V+E+ K K+++ V +IH+ L LS D H R Sbjct: 239 DMLVDEVSRKLIGKEITT---FESVMTIIHRSLEEAVIRVLSSARKVDILHDINRVGKSR 295 Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P+VI VGVNGVGK+T + KL ++ VM+AA DTFR+ A++QL+ R Sbjct: 296 PYVITFVGVNGVGKSTSLSKLVYWLTQQNFSVMVAACDTFRAGAVEQLRTHCHRLGCALY 355 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 D + +A +A +QA + +DV++IDTAGR+ +N LM + K++ V K P Sbjct: 356 ERGYERDPSTIAQQAIQQATRQNIDVVMIDTAGRMQDNEPLMRSLAKLLNVNK------P 409 Query: 231 HSVLQVLDATTGQNALRQVEMFH-------AVAG--TTGLIMTKMDGT-ARGGGLIPIVV 280 V DA G + + Q+ F ++G G+ +TK D + G + +V Sbjct: 410 DFTFFVGDALVGNDGVSQILQFERRLQELTELSGGVIDGIFLTKFDTIDEKVGAALSLVH 469 Query: 281 THKIPVYFLGVGEGINDLEPFVAK 304 IPV F+G G+ DL F A+ Sbjct: 470 ASAIPVLFVGTGQTYGDLRRFQAE 493 >gi|71275946|ref|ZP_00652229.1| Signal recognition particle protein [Xylella fastidiosa Dixon] gi|71902277|ref|ZP_00684273.1| Signal recognition particle protein [Xylella fastidiosa Ann-1] gi|170729299|ref|YP_001774732.1| signal recognition particle protein [Xylella fastidiosa M12] gi|71163323|gb|EAO13042.1| Signal recognition particle protein [Xylella fastidiosa Dixon] gi|71727973|gb|EAO30192.1| Signal recognition particle protein [Xylella fastidiosa Ann-1] gi|167964092|gb|ACA11102.1| signal recognition particle protein [Xylella fastidiosa M12] Length = 455 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 87/291 (29%), Positives = 153/291 (52%), Gaps = 17/291 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L I + RL ++ +RE E+ L+ +D+ ++V Q ++E + + Sbjct: 2 FESLTQRLSGTIERLRGRGRLTEENIREATREVRIALLEADVALSVVQALIERIKIRALG 61 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V Q ++ V + + ++ + N + P VIL+ G+ G GKT+++GKL Sbjct: 62 QEVLKSLTPGQALIKVVRDELAAVMGDSASELNLNVPA-PAVILLAGLQGAGKTSMVGKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + K V++ + D +R AAI+QL+I +++ + S +G + + A A+ Sbjct: 121 AKYLKEKRKKKVLVVSADVYRPAAIEQLRILSEQVNVLCFPSSVGQNPVDIVRAAIADAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 VDVL++DTAGRL + +M I + D P L V+D+ TGQ+A + Sbjct: 181 KSFVDVLLVDTAGRLAIDQGMMDEIKAL------HDTLVPVETLFVVDSMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 F TG+I+TK DG ARGGG + + P+ F+G GE ++DL+ F Sbjct: 235 AFSEALPLTGVILTKTDGDARGGGALSVRYITGRPIKFVGTGEKVDDLDVF 285 >gi|167753500|ref|ZP_02425627.1| hypothetical protein ALIPUT_01774 [Alistipes putredinis DSM 17216] gi|167658125|gb|EDS02255.1| hypothetical protein ALIPUT_01774 [Alistipes putredinis DSM 17216] Length = 443 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/274 (31%), Positives = 138/274 (50%), Gaps = 12/274 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SVQRVLYDVSELIHKMLMPLSKPFN 104 +E+ LI +D+ VA+ +E+ K +DV SV+ +++++ L L Sbjct: 32 KEIRRALIDADVNYKVAKSFTDEVKQKALGQDVLKSVKPGQM-ITKIVRDELAQLMGGTA 90 Query: 105 WD--FSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIW 161 D P VIL+ G+ G GKTT GKL+ + S G +V+L AGD +R AAIDQLK+ Sbjct: 91 TDIKLEGTPAVILIAGLQGSGKTTFSGKLAAMLKSKKGRQVLLVAGDVYRPAAIDQLKVL 150 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 + + E + +A A K A+ +V+I+DTAGRL + +M I + + Sbjct: 151 GGQIGVEVYTEEGNKNPVQIAENAIKYARQHGFNVVIVDTAGRLAVDEAMMQEITAIKQA 210 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 +K P L V+D+ TGQ+A+ F+ G+++TK+DG RGG I I Sbjct: 211 VK------PGETLFVVDSMTGQDAVNTAREFNQRLDFDGVVLTKLDGDTRGGAAISIRAV 264 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+ GE ++ ++ F + + I G D Sbjct: 265 VNKPLKFISSGEKMDAIQVFHPERMADRILGMGD 298 >gi|312140440|ref|YP_004007776.1| signal recognition particle protein [Rhodococcus equi 103S] gi|311889779|emb|CBH49096.1| signal recognition particle protein [Rhodococcus equi 103S] Length = 526 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 94/318 (29%), Positives = 151/318 (47%), Gaps = 30/318 (9%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + D+ RL D E+ L+ +D+ + V + + ++ + Sbjct: 2 FESLSDRLTGALKDLRGKGRLSGADIDATCREIRLALLEADVALPVVRTFIAKIKERAKG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L ++ + + P VI++ G+ G GKTT+ GKL Sbjct: 62 AEVSAALNPAQQVVKIVNEELVGILGGETRRLQFAKTP-PTVIMLAGLQGSGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--------------D 177 +K + D G +L A D R A+ QL+I +R A G+ D Sbjct: 121 AKWLKDQGHTPLLVACDLQRPGAVSQLQIVGERAGAAVFAPHPGTSIGGGENPLGISAAD 180 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 +A ++A+ K+ DV+I+DTAGRL + LMA IR D P + VL Sbjct: 181 PVEVARAGVEEARNKQYDVVIVDTAGRLGIDEELMAQAAG-IR-----DAVQPDETIFVL 234 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA GQ+A+ E F + G TG+++TK+DG ARGG + + P+ F GE + D Sbjct: 235 DAMIGQDAVHTAEAFKSGVGFTGVVLTKLDGDARGGAALSVREVTGEPILFASTGEKLED 294 Query: 298 LEPFVAKDFSAVITGCLD 315 + F ++ I G D Sbjct: 295 FDVFHPDRMASRILGMGD 312 >gi|294155954|ref|YP_003560338.1| signal recognition particle protein [Mycoplasma crocodyli MP145] gi|291600518|gb|ADE20014.1| signal recognition particle protein [Mycoplasma crocodyli MP145] Length = 448 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 119/231 (51%), Gaps = 12/231 (5%) Query: 90 ELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS---KKMSDAGLKVML 144 +++H+ L+ + K +P++I++ G+ G GKTT + KLS KK + K ++ Sbjct: 76 KIVHEELIKVLGGKVVELKIEKKPYIIMMCGLQGSGKTTAVAKLSYYFKKKHNIE-KPLV 134 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 A D +R AA+DQL A D+ + A + A +A K D++IIDTAGR Sbjct: 135 VAADIYRPAAVDQLVTLAKSIQVDYYQEGTNNTAENIVKNALDEAYKNKNDLIIIDTAGR 194 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 L + LM + + ++ K P +L V DA +GQ+ + E FH+ TG I+T Sbjct: 195 LSIDEKLMQELQNIKKIAK------PDEILFVSDALSGQDIINVAETFHSNLKLTGSIIT 248 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 K+D ARGG + I +P+ F+G GE +++L+ F + I G D Sbjct: 249 KLDSDARGGAALSIRQVLNLPIRFIGTGEKVSNLDLFYPDRMADRILGMGD 299 >gi|302654315|ref|XP_003018965.1| hypothetical protein TRV_06976 [Trichophyton verrucosum HKI 0517] gi|291182655|gb|EFE38320.1| hypothetical protein TRV_06976 [Trichophyton verrucosum HKI 0517] Length = 650 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 91/283 (32%), Positives = 137/283 (48%), Gaps = 40/283 (14%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLY-DVSELIHKMLMP----- 98 +ED L++ ++ A ++ E EL+ K+ A S+ L + + K+L P Sbjct: 361 MEDHLLKKNVAREAAVRLCEGVQKELVGKKTASFQSIDSALRAGMESSLRKILTPTTSLD 420 Query: 99 -------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 ++ P N RP+VI VVGVNGVGK+T + KL + KV++AA DTFR Sbjct: 421 LLREIEVVTSPTNQQQPRRPYVISVVGVNGVGKSTNLSKLCFFLLQNKYKVLIAACDTFR 480 Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200 S A++QL++ A R + E G DAA +A +A A DV++ID Sbjct: 481 SGAVEQLRVHA-RNLKELSARENAGHVELYEKGYGKDAANVAKDAVAYAATNDFDVVLID 539 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258 TAGR HN+ LM+ + K + P +L V +A G +++ Q F+ G Sbjct: 540 TAGRRHNDQRLMSSLEKFAKFAN------PDKILMVGEALVGTDSVMQARNFNQAFGPGR 593 Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G I++K D G L+ +V IP+ FLGVG+ DL Sbjct: 594 GLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 636 >gi|229918605|ref|YP_002887251.1| signal recognition particle protein [Exiguobacterium sp. AT1b] gi|229470034|gb|ACQ71806.1| signal recognition particle protein [Exiguobacterium sp. AT1b] Length = 446 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/279 (30%), Positives = 144/279 (51%), Gaps = 33/279 (11%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS---------VQRVLYDVSELIHKMLMPLSKPF 103 L+ +D+ V ++ V ++ + +DV V+ V ++S L+ ++P++ Sbjct: 39 LLEADVNFKVVKQFVNDVKERAVGQDVMKSLTPGQQVVKIVHEELSNLMGSDVVPIT--- 95 Query: 104 NWDFSHRPH-VILVVGVNGVGKTTVIGKLS----KKMSDAGLKVMLAAGDTFRSAAIDQL 158 FS +P V+++VG+ G GKTT GKL+ KK + + L L A D +R AAI QL Sbjct: 96 ---FSQKPPTVVMMVGLQGAGKTTTTGKLANLIRKKHNRSPL---LVAADIYRPAAIKQL 149 Query: 159 KIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 + + D +G + +A + A+ D ++IDTAGRLH + LM + Sbjct: 150 ETLGKQL--DLPVFSLGDQVKPEEIVTKALEYAKTNHHDFVLIDTAGRLHIDETLMGELE 207 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + + K P+ + V+D+ TGQ+A+ + F+ G TG+++TK+DG RGG + Sbjct: 208 NVKTIAK------PNEIFLVVDSMTGQDAVNVADSFNEKLGITGVVLTKLDGDTRGGAAL 261 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I P+ F+G+GE ++ LEPF + ++ I G D Sbjct: 262 SIKAVTGAPIKFVGLGEKLDALEPFHPERMASRILGMGD 300 >gi|163750612|ref|ZP_02157849.1| signal recognition particle protein Ffh [Shewanella benthica KT99] gi|161329607|gb|EDQ00598.1| signal recognition particle protein Ffh [Shewanella benthica KT99] Length = 457 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 92/308 (29%), Positives = 151/308 (49%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V++ L ++ L+ +D+ + V + V + + Sbjct: 2 FENLTDRLSRTLKNISGRGRLTEDNVKDTLREVRMALLEADVALPVVRAFVNSVKERAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q + V + + +++ + + P VI++ G+ G GKTT + KL Sbjct: 62 HEVSKSLSPGQAFIKIVQSELENAMGEVNEGLDLS-AQPPAVIMMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + K V++ + D +R AAI QL+ A F S++ + A A+ Sbjct: 121 GKFLREREKKSVLVVSADVYRPAAIKQLETLAIEVDVQFFPSDVSQKPIDIVKAALAHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K +DV+I+DTAGRLH + +M I + HA P L V+DA TGQ+A Sbjct: 181 LKFIDVVIVDTAGRLHVDEGMMDEIKAL---------HAAVNPVETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+I+TK+DG ARGG + I P+ FLGVGE + LE F + Sbjct: 232 TAKAFNEALPLTGIILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEAFHPDRIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|333031351|ref|ZP_08459412.1| signal recognition particle protein [Bacteroides coprosuis DSM 18011] gi|332741948|gb|EGJ72430.1| signal recognition particle protein [Bacteroides coprosuis DSM 18011] Length = 441 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 94/298 (31%), Positives = 151/298 (50%), Gaps = 23/298 (7%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 SE L KL KG + IT+I + L D VR L D +D+ VA+K Sbjct: 6 SERLERSFKLLKGEGT--------ITEINVAETLKD-VRRALLD----ADVNYKVAKKFT 52 Query: 68 EELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGK 124 + + K +DV + + + +++H L L + ++D +P VIL+ G+ G GK Sbjct: 53 DTVKEKALGQDVLTAVKPSQLMVKIVHDELTQLMGGETADFDVQGKPAVILMSGLQGSGK 112 Query: 125 TTVIGKLSKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 TT GKL+K + +L A D +R AAIDQLK+ ++ + D +A Sbjct: 113 TTFSGKLAKLLKTKKHKSPLLVACDVYRPAAIDQLKVLGEQINVPVYAEPDSKDPVKIAQ 172 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 A ++A+AK D++IIDTAGRL + +M I + + + P+ VL V+D+ TGQ Sbjct: 173 NAIQEAKAKGNDIVIIDTAGRLAIDEQMMNEIESIKKAIN------PNEVLFVVDSMTGQ 226 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +A+ + F+ G+++TK+DG RGG + I P+ F+G GE + ++ F Sbjct: 227 DAVNTAKEFNERLNFDGVVLTKLDGDTRGGAALSIRTVVNKPIKFVGTGEKLEAIDQF 284 >gi|54287932|gb|AAV31413.1| putative signal recognition particle protein [Toxoptera citricida] Length = 449 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/304 (27%), Positives = 160/304 (52%), Gaps = 19/304 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F+S + +L + + +II+ RL +D +++ E+ L+ +D+ ++V +K + + K+ A Sbjct: 2 FSSLAERLSKSLRNIINKGRLTEDNIKDTIREVRKALLEADVTLSVVKKFI--INVKKKA 59 Query: 77 KDVSVQRVLYDVSELI----HKMLMPLSKPFN-WDFSHRP-HVILVVGVNGVGKTTVIGK 130 + + E I +++++ + N + S +P +IL++G+ G GKTT + K Sbjct: 60 IGHEINKSFTPGQEFIKIVRNELILSMGDQDNDLNLSTQPPAIILIIGLQGAGKTTTVAK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 ++K + + K+++ + D +R+AAI QL+I + + + +F S I + EA + A Sbjct: 120 IAKWIQNKYKKKILITSTDVYRAAAIKQLEILSSQININFYLSNINQKPINITKEAIQHA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K D+L+IDTAGRLH + +M I ++ + P L V+D+ GQ+A+ Sbjct: 180 KLKFYDILLIDTAGRLHIDEKMMNEIQEI------QNFSNPIETLLVVDSMMGQDAINMA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 F+ +G+I+TK D +R G + + + F+G GE I +LE F + + Sbjct: 234 TNFNKYLSISGIILTKTDSDSRSGIALSMRYITGKSIKFIGTGEKITNLEIFHPERMADK 293 Query: 310 ITGC 313 I G Sbjct: 294 ILGM 297 >gi|322693736|gb|EFY85586.1| signal sequence receptor alpha subunit [Metarhizium acridum CQMa 102] Length = 654 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 90/289 (31%), Positives = 140/289 (48%), Gaps = 40/289 (13%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQ-RVLYDVSELIHKMLMPLSK-- 101 +E+ L+R ++ A ++ E EL+ R S+ ++ + + KML P S Sbjct: 363 MEEHLLRKNVAREAAVRLCEGVEKELVGVRTGNFESINTKIQTAMESSLTKMLTPTSSLD 422 Query: 102 -----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 P RP+VI +VGVNGVGK+T + K+ + KV++AAGDTF Sbjct: 423 LLREIDSITAPPATSLRKARPYVISIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTF 482 Query: 151 RSAAIDQLKIWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIID 200 RS A++QL + R + E G DAA +A +A A + DV++ID Sbjct: 483 RSGAVEQLAVHV-RNLKELTAREGGRVELYQKGYGKDAATVAKDAVSHAAQEGFDVVLID 541 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT- 259 TAGR HN+ LM+ + K + + P +L V +A G +++ Q F+A G+ Sbjct: 542 TAGRRHNDQRLMSSLEKFAKFAQ------PDKILMVGEALVGTDSVAQARNFNAAFGSVR 595 Query: 260 ---GLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 G I++K D G L+ +V +PV F+GVG+ +DL F K Sbjct: 596 TLDGFIISKCDTVGDMVGTLVSLVHATNVPVLFVGVGQHYSDLRNFSVK 644 >gi|146087779|ref|XP_001465902.1| signal recognition particle [Leishmania infantum JPCM5] gi|134070003|emb|CAM68333.1| putative signal recognition particle [Leishmania infantum JPCM5] gi|322499389|emb|CBZ34462.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 519 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/284 (28%), Positives = 138/284 (48%), Gaps = 15/284 (5%) Query: 42 DDGVRE---ELEDLLIRSDIGVAVAQK----IVEELLTKRYAKDVSVQRVLYD-VSELIH 93 +D V+E E+ L+++D+ V + +K I EL ++ +++L + V + Sbjct: 25 EDDVKELMNEIARALLQADVNVTIVKKLQVSIKTELALAEEGAGLNKRKILQNAVFNGLK 84 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 ++L P KPF + +V++ VG+ G GKTT K + G K L DTFR+ Sbjct: 85 RILDPGVKPF-IPVKGKQNVVMFVGLQGSGKTTSCTKYAVYFQRKGFKTALVCADTFRAG 143 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A DQL+ A + F S +D A+A E + + +K D++I+DT+GR S L Sbjct: 144 AYDQLRQNATKAKVRFYGSLTEADPVAIAKEGVAELKKEKYDLIIVDTSGRHKQESALFE 203 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + ++ +K P+ ++ V+ AT GQ Q F + +I+TK+D +GG Sbjct: 204 EMKQVEEAVK------PNDIVFVMSATDGQAVEEQARNFKEMVAVGSVIVTKLDCQTKGG 257 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317 G + V + P+ F+G GE D + F + F + G D G Sbjct: 258 GALSAVAATRSPIVFIGTGEHFEDFDLFNPERFVQKMLGMGDIG 301 >gi|62899020|ref|NP_446323.1| signal recognition particle 54 kDa protein [Rattus norvegicus] gi|73621950|sp|Q6AYB5|SRP54_RAT RecName: Full=Signal recognition particle 54 kDa protein; Short=SRP54 gi|50925703|gb|AAH79117.1| Signal recognition particle 54a [Rattus norvegicus] Length = 504 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYFYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E ++ + + +++I+DT+GR L +M++V + P Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVSNAIQPD- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D EPF + F + + G D Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299 >gi|91079686|ref|XP_967889.1| PREDICTED: similar to AGAP004610-PA [Tribolium castaneum] gi|270003347|gb|EEZ99794.1| hypothetical protein TcasGA2_TC002574 [Tribolium castaneum] Length = 508 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/279 (29%), Positives = 138/279 (49%), Gaps = 14/279 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLT----KRYAKDVSVQRVLYDV--SELIHKML 96 +G+ +E+ L+ +D+ + + +K+ E + A ++ +R++ EL+ K++ Sbjct: 29 NGMLKEICAALLEADVNIRLVKKLRENVRAVIDFDEMAGGLNKRRMIQSAVFKELV-KLV 87 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 P KP+ +P+VI+ VG+ G GKTT KL+ K L DTFR+ A D Sbjct: 88 DPGVKPYQ-PVKGKPNVIMFVGLQGSGKTTTCTKLAYHYQKKNWKSCLVCADTFRAGAYD 146 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 Q+K + F S D +A + + + +++I+DT+GR L Sbjct: 147 QVKQNCTKARIPFYGSYTEVDPVVIAQDGVDMFKKEGFEIIIVDTSGRHKQEESLFE--- 203 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 +M+ V + P +++ V+DAT GQ Q + F +I+TK+DG A+GGG + Sbjct: 204 EMLAVSNAIQPD---NIIFVMDATIGQACEAQAKAFKEKVDVGSVIITKLDGHAKGGGAL 260 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 V P+ ++G GE I+DLEPF K F + + G D Sbjct: 261 SAVAATNSPIIYIGTGEHIDDLEPFKTKPFVSKLLGMGD 299 >gi|330996193|ref|ZP_08320083.1| signal recognition particle protein [Paraprevotella xylaniphila YIT 11841] gi|329573697|gb|EGG55288.1| signal recognition particle protein [Paraprevotella xylaniphila YIT 11841] Length = 451 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/279 (30%), Positives = 140/279 (50%), Gaps = 13/279 (4%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99 V E L+D+ L+ +D+ VA+ + + K ++V + + + +++H L L Sbjct: 26 NVAETLKDVRRALLDADVNYKVAKTFTDTVKQKALGQNVLTAVKPSQLMVKIVHDELATL 85 Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAID 156 + + P VIL+ G+NG GKTT+ GKL+ + K +LAA D +R AAI+ Sbjct: 86 MGGETAELNLQGHPSVILMAGLNGAGKTTLSGKLALMLKSKKRKNPLLAACDIYRPAAIE 145 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QLK+ ++ DA +A A K+A+AK DV+I+DTAGRL + +M I Sbjct: 146 QLKVLGEQIGIPVYSEPDNKDAVQIAQNAVKEAKAKGYDVVIVDTAGRLAVDEQMMQEIA 205 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + + P L V+DA TGQ+A+ + F+ G+++TK+DG RGG + Sbjct: 206 AIKHGIN------PDETLFVVDAMTGQDAVNTAKEFNDRLDFDGVVLTKLDGDTRGGAAL 259 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I P+ F+G GE + ++ F + I G D Sbjct: 260 SIRTVVNKPIKFVGTGEKMEAIDQFHPSRMADRILGMGD 298 >gi|325675945|ref|ZP_08155628.1| signal recognition particle protein [Rhodococcus equi ATCC 33707] gi|325553183|gb|EGD22862.1| signal recognition particle protein [Rhodococcus equi ATCC 33707] Length = 526 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 94/318 (29%), Positives = 151/318 (47%), Gaps = 30/318 (9%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + D+ RL D E+ L+ +D+ + V + + ++ + Sbjct: 2 FESLSDRLTGALKDLRGKGRLSGADIDATCREIRLALLEADVALPVVRTFIAKIKERAKG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L ++ + + P VI++ G+ G GKTT+ GKL Sbjct: 62 AEVSAALNPAQQVVKIVNEELVGILGGETRRLQFAKTP-PTVIMLAGLQGSGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--------------D 177 +K + D G +L A D R A+ QL+I +R A G+ D Sbjct: 121 AKWLKDQGHTPLLVACDLQRPGAVSQLQIVGERAGAAVFAPHPGTSIGGGENPLGISAAD 180 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 +A ++A+ K+ DV+I+DTAGRL + LMA IR D P + VL Sbjct: 181 PVEVARAGVEEARNKQYDVVIVDTAGRLGIDEELMAQAAG-IR-----DAVQPDETIFVL 234 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA GQ+A+ E F + G TG+++TK+DG ARGG + + P+ F GE + D Sbjct: 235 DAMIGQDAVHTAEAFKSGVGFTGVVLTKLDGDARGGAALSVREVTGEPILFASTGEKLED 294 Query: 298 LEPFVAKDFSAVITGCLD 315 + F ++ I G D Sbjct: 295 FDVFHPDRMASRILGMGD 312 >gi|65321173|ref|ZP_00394132.1| COG0541: Signal recognition particle GTPase [Bacillus anthracis str. A2012] Length = 464 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 110/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K ML A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ D ++IDTAG LH + LM + K+ V K Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGHLHIDEELMDELAKVKEVAK---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+DA TGQ+A+ + FH G TG+++TK+DG RGG + I P+ Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ LE F + ++ I G D Sbjct: 273 FAGMGEKLDALEAFHPERMASRILGMGD 300 >gi|118487996|gb|ABK95819.1| unknown [Populus trichocarpa] Length = 495 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 87/290 (30%), Positives = 142/290 (48%), Gaps = 19/290 (6%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVA-------QKIVE-ELLTKRYAKDVSVQRVLY 86 II + L+D + E + L++SD+ + +KIV + L + K +Q+ ++ Sbjct: 22 IIDEKALNDCLNE-ITRALLQSDVQFKLVRDMQTNIKKIVNLDDLAAGHNKRRIIQQAIF 80 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + EL K+L P F + V++ VG+ G GKTT K + G K L Sbjct: 81 N--ELC-KILDPGKSSFTPK-KGKTSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 DTFR+ A DQLK A + F S SD +A E + + + D++I+DT+GR Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAEEGVETFKKENCDLIIVDTSGRHK 196 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + L+ + ++ K P ++ V+D++ GQ Q + F + +I+TKM Sbjct: 197 QEAALLEEMRQVSEATK------PDLIIFVMDSSIGQAPFDQAQAFKQMVAVGAVIITKM 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316 DG A+GGG + V K PV F+G GE +++ E F K F + + G D+ Sbjct: 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300 >gi|26988194|ref|NP_743619.1| signal recognition particle protein [Pseudomonas putida KT2440] gi|24982931|gb|AAN67083.1|AE016337_6 signal recognition particle protein Ffh [Pseudomonas putida KT2440] Length = 538 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 94/306 (30%), Positives = 156/306 (50%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 82 FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KDRA 139 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N D + P V+L+ G+ G GKTT GK Sbjct: 140 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLALNAAPPAVVLMAGLQGAGKTTTAGK 199 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL+ A+ F S+I A+A A ++A Sbjct: 200 LARFLKERKKKSVMVVSADVYRPAAIKQLETLANDIGVTFFPSDISQKPVAIAEAAIREA 259 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K +DV+I+DTAGRLH ++ +M I + +K P L V+DA TGQ+A Sbjct: 260 KLKFIDVVIVDTAGRLHIDADMMDEIKALHAAVK------PIETLFVVDAMTGQDAANTA 313 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+++TK+DG ARGG + + P+ F+G+GE LEPF ++ Sbjct: 314 KAFGEALPLTGVVLTKVDGDARGGAALSVRAITGKPIKFIGMGEKTEALEPFHPDRVASR 373 Query: 310 ITGCLD 315 I G D Sbjct: 374 ILGMGD 379 >gi|227823738|ref|YP_002827711.1| signal recognition particle protein [Sinorhizobium fredii NGR234] gi|227342740|gb|ACP26958.1| signal recognition particle protein [Sinorhizobium fredii NGR234] Length = 518 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/274 (30%), Positives = 144/274 (52%), Gaps = 13/274 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SVQRVLYDVSELIHKMLMPL--SKPF 103 E+ L+ +D+ + V + E++ K ++ S++ V +++H L+ + S+ Sbjct: 33 EVRRALLEADVALDVVRSFTEKVREKAVGAEILKSIKPGQM-VVKIVHDELIAMLGSEGV 91 Query: 104 NWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIW 161 D + P V+++VG+ G GKTT GK++K+++ K V++A+ DT R AA +QL+ Sbjct: 92 TIDLNAPAPVVVMMVGLQGSGKTTTTGKIAKRLTTRDKKKVLMASLDTRRPAAQEQLRQL 151 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 +T D + G +A A + A+ D++I+DTAGR H + LM + ++ R Sbjct: 152 GVQTGVDTLPVIAGQSPTDIAARAVQAAKLGGHDIVILDTAGRTHIDEPLMIEMAEIKR- 210 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 PH +L V DA TGQ+A+ F G TGL++T+MDG RGG + + Sbjct: 211 -----KSNPHEILLVADALTGQDAVNLARNFDDRVGITGLVLTRMDGDGRGGAALSMRAV 265 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ +GVGE +++LE F + + I G D Sbjct: 266 TGKPIKLIGVGEKMDELEEFHPRRVADRILGMGD 299 >gi|94988647|ref|YP_596748.1| signal recognition particle subunit FFH/SRP54 [Streptococcus pyogenes MGAS9429] gi|94992471|ref|YP_600570.1| signal recognition particle, subunit FFH/SRP54 [Streptococcus pyogenes MGAS2096] gi|94542155|gb|ABF32204.1| signal recognition particle subunit FFH/SRP54 [Streptococcus pyogenes MGAS9429] gi|94545979|gb|ABF36026.1| signal recognition particle, subunit FFH/SRP54 [Streptococcus pyogenes MGAS2096] Length = 522 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 90/312 (28%), Positives = 160/312 (51%), Gaps = 23/312 (7%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT 72 +T F S + +L++ I ++L + V +E+ L+ +D+ + V + ++ + Sbjct: 1 MTMAFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRE 60 Query: 73 KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126 + ++ Q++L V+E + +L S+ D S + P +I++VG+ G GKTT Sbjct: 61 RAIGHEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTT 118 Query: 127 VIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAY 183 GKL+ K+ + + ++ A D +R AAIDQLK + + ++G+D +A + Sbjct: 119 FAGKLANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVR 176 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 + +QA+ + D ++IDTAGRL + LM + +R +K L P +L V+D+ GQ Sbjct: 177 KGLEQARENRNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPDEILLVVDSMIGQ 230 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 A F+ TG+++TK+DG RGG + + P+ F G+GE I D+E F Sbjct: 231 EAANVAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHP 290 Query: 304 KDFSAVITGCLD 315 S+ I G D Sbjct: 291 DRMSSRILGMGD 302 >gi|291546242|emb|CBL19350.1| signal recognition particle protein [Ruminococcus sp. SR1/5] Length = 450 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 116/203 (57%), Gaps = 6/203 (2%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 V+++VG+ G GKTT + KL+ K+ G + +L A D +R AAI QL++ ++ + Sbjct: 104 VLMMVGLQGAGKTTTVAKLAGKLKSKGKRPLLVACDVYRPAAITQLQVNGEKQGVEVFSM 163 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 + +A A + A++ + +V++IDTAGRLH + +M + + + + + + Sbjct: 164 GDKQNPVDIAKAAIEHAKSNQQNVVLIDTAGRLHIDEDMMQELEDI-----KANVNVDAT 218 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 VL V+DA TGQ+A+ + F G G+I+TKMDG RGG + I P++++G+G Sbjct: 219 VL-VVDAMTGQDAVNVAQNFSDKVGIDGVILTKMDGDTRGGAALSIKAVTGKPIFYVGMG 277 Query: 293 EGINDLEPFVAKDFSAVITGCLD 315 E ++DLE F + ++ I G D Sbjct: 278 EKLSDLEQFYPERMASRILGMGD 300 >gi|293189830|ref|ZP_06608544.1| signal recognition particle protein [Actinomyces odontolyticus F0309] gi|292821245|gb|EFF80190.1| signal recognition particle protein [Actinomyces odontolyticus F0309] Length = 527 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/274 (30%), Positives = 137/274 (50%), Gaps = 18/274 (6%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 LI +D+ + V ++ ++ K Y S Q+V+ V E + ++L ++ + Sbjct: 38 LIDADVALPVVRQFTTQVREKAYGAARSKALNPGQQVVSIVHEELVEILGGATRELTFAE 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P V ++ G+ G GKTT+ GKL K + + G V+L A D R A+ QL++ +R Sbjct: 98 SG-PTVFMLAGLQGAGKTTLAGKLGKWLREEGKTVLLVASDLQRPNAVQQLQVVGERAGV 156 Query: 168 DFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 E G+ D +A + A+ ++V+I+DTAGRL + +M + + Sbjct: 157 KVWAPEPGNGVGDPVEVARSGVEFARQSGINVVIVDTAGRLGVDQEMME------QAIAI 210 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 D PH ++ VLDA GQ+A+ F G TG++++K+DG ARGG + + Sbjct: 211 RDAVNPHEIMFVLDAMVGQDAVSTSTAFRDGVGFTGVVLSKLDGDARGGAALSVRGVTGA 270 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 P+ F GEG++D E F A + I LD G+ Sbjct: 271 PILFASTGEGLDDFERFHADRMAGRI---LDMGD 301 >gi|323359703|ref|YP_004226099.1| signal recognition particle GTPase [Microbacterium testaceum StLB037] gi|323276074|dbj|BAJ76219.1| signal recognition particle GTPase [Microbacterium testaceum StLB037] Length = 514 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 90/310 (29%), Positives = 154/310 (49%), Gaps = 22/310 (7%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L E ++ +L DG E+ L+ +D+ + V ++ + + Sbjct: 4 FGTLSDRLTETFRNLRKKGQLTPADVDGTVREIRRALLDADVALPVVKEFTAAVRERALG 63 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q+V+ V++ + +L + + + P VI++ G+ G GKTT GKL Sbjct: 64 DEVNRALNPAQQVVQIVNDELIGILGGKQRRLQF-AKNPPTVIMLAGLQGSGKTTFAGKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188 +K + G +L A D R A++QL++ A+R A E G+ D +A + Sbjct: 123 AKMLEKDGHTPLLVACDLQRPNAVNQLQVVAERAGAAIYAPEPGNGVGDPVKVARDGVAY 182 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A ++ D++IIDTAGRL ++ LM IR + P VL V+DA GQ+A+ Sbjct: 183 ATRQQHDIVIIDTAGRLGVDAELMKQAAD-IRTATQ-----PDEVLFVIDAMIGQDAVNT 236 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG++++K+DG ARGG + + P+ F GEG++D+EPF ++ Sbjct: 237 AKAFQDGVDFTGVVLSKLDGDARGGAALSVASVTGRPIIFASTGEGLDDVEPFHPDRMAS 296 Query: 309 VITGCLDYGE 318 I LD G+ Sbjct: 297 RI---LDLGD 303 >gi|46128914|ref|XP_388961.1| hypothetical protein FG08785.1 [Gibberella zeae PH-1] Length = 659 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 92/281 (32%), Positives = 140/281 (49%), Gaps = 31/281 (11%) Query: 40 RLDDGVREELEDLLIRSDIGV-AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 RL +GV +EL + S + A Q +E LTK S+ +L ++ + + Sbjct: 384 RLCEGVEKELVGVKTGSFESINARIQAAMEASLTKMLTPTSSLD-LLREIDAITAPSVTS 442 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 L KP RP+V+ +VGVNGVGK+T + K+ + KV++AAGDTFRS A++QL Sbjct: 443 LRKP-------RPYVMSIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVEQL 495 Query: 159 KIWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 + R + E G DAA +A +A A + DV++IDTAGR HN+ Sbjct: 496 AVHV-RNLKELTAREGGRVELYQKGYGKDAATVAKDAVSHAAQEGYDVVLIDTAGRRHND 554 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT----GLIMT 264 LM+ + K + + P +L V +A G +++ Q F+A G G I++ Sbjct: 555 QRLMSSLEKFAKFAQ------PDKILMVGEALVGTDSVAQARNFNAAFGAVRTLDGFIIS 608 Query: 265 KMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 K D G L+ +V +PV F+GVG+ +DL F K Sbjct: 609 KCDTVGDMVGTLVSLVHATNVPVLFVGVGQHYSDLRNFSVK 649 >gi|325297211|ref|YP_004257128.1| signal recognition particle protein [Bacteroides salanitronis DSM 18170] gi|324316764|gb|ADY34655.1| signal recognition particle protein [Bacteroides salanitronis DSM 18170] Length = 441 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 134/265 (50%), Gaps = 13/265 (4%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99 V E L+D+ L+ +D+ VA+ + + K ++V + + + +++H L L Sbjct: 26 NVAETLKDVRRALLDADVNYKVAKNFTDTVKEKAMGQNVLTAVKPSQLMVKIVHDELAKL 85 Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156 D RP VIL+ G+ G GKTT GKL++ + K +L A D +R AAI+ Sbjct: 86 MGGDTIELDLKGRPAVILMSGLQGSGKTTFSGKLARMFKTKKNRKPLLVACDVYRPAAIE 145 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QLK+ + D +A A ++A+AK D++I+DTAGRL + +M I Sbjct: 146 QLKVLGTQVEVPVYSEPESKDPVQIAKNAIQEAKAKGYDLVIVDTAGRLAVDEQMMNEIE 205 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + + P + L V+DA TGQ+A+ F+ TG+++TK+DG RGG + Sbjct: 206 TIKNAI------TPDATLFVVDAMTGQDAVNTAREFNERLDFTGVVLTKLDGDTRGGAAL 259 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301 I P+ F+G GE ++ ++ F Sbjct: 260 SIRTVVNKPILFVGTGEKLDAVDLF 284 >gi|111023492|ref|YP_706464.1| signal recognition particle protein [Rhodococcus jostii RHA1] gi|110823022|gb|ABG98306.1| signal recognition particle protein [Rhodococcus jostii RHA1] Length = 528 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 97/320 (30%), Positives = 153/320 (47%), Gaps = 34/320 (10%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + D+ RL D E+ L+ +D+ + V + + ++ K A Sbjct: 2 FESLSDRLTGALKDLRGKGRLSGADIDATCREIRLALLEADVALPVVRSFIAKI--KERA 59 Query: 77 KDVSV-------QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 K V V Q+V+ V+E + ++L ++ + + P VI++ G+ G GKTT+ G Sbjct: 60 KGVEVSAALNPAQQVVKIVNEELVEILGGETRRLAFAKTP-PTVIMLAGLQGSGKTTLAG 118 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS------------- 176 KL+K + D G +L A D R A+ QL+I +R A G+ Sbjct: 119 KLAKWLRDQGHTPLLVACDLQRPGAVTQLQIVGERAGATVFAPHPGTSIGGGDNELGVTA 178 Query: 177 -DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 D +A ++A+ K+ DV+I+DTAGRL ++ LMA IR D P + Sbjct: 179 ADPVEVARAGVEEARNKQFDVVIVDTAGRLGIDADLMAQAAG-IR-----DAVNPDETIF 232 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 VLDA GQ+A+ E F G TG+++TK+DG ARGG + + P+ F GE + Sbjct: 233 VLDAMIGQDAVSTAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGQPILFASTGEKL 292 Query: 296 NDLEPFVAKDFSAVITGCLD 315 D + F ++ I G D Sbjct: 293 EDFDVFHPDRMASRILGMGD 312 >gi|257075577|ref|ZP_05569938.1| signal recognition particle protein Srp54 [Ferroplasma acidarmanus fer1] Length = 457 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 85/279 (30%), Positives = 144/279 (51%), Gaps = 24/279 (8%) Query: 45 VREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQ----RVLYDVSELIHKML 96 V +E++ L+++D+ V + K+ E L ++ ++ Q RV+Y+ ++L Sbjct: 31 VTKEIQRALLKADVNVKLVLKLTNTVQERALNEKPPAGMTAQDYIIRVIYE------ELL 84 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 L N+D +P I++VG+ G GKTT GKL++ GL L A D R A + Sbjct: 85 KILGTDSNFDL--KPQTIMLVGLYGNGKTTTAGKLARLFMKKGLSTGLIAADVHRPGAFE 142 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL+ + + F + +A + K+ + K+ IIDT+GR +S+ I Sbjct: 143 QLQQISGDVNCGFYGEKEEKNALKIVRNGIKELEDFKIK--IIDTSGR---DSLDQELID 197 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 ++ + ++++P +VL V+DAT GQ A Q + H G+I+TKMDGT + GG + Sbjct: 198 EVHEIKEKINPD---TVLFVIDATLGQQAGPQAKTLHDAVNIDGVIITKMDGTGKAGGAL 254 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 V + PVYF+G GE ++D++ F K F + + G D Sbjct: 255 SAVADIQSPVYFIGTGEHMDDIQIFNPKKFLSRLLGMGD 293 >gi|311030155|ref|ZP_07708245.1| signal recognition particle protein [Bacillus sp. m3-13] Length = 448 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 68/209 (32%), Positives = 112/209 (53%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 S P VI++VG+ G GKTT GKL+ + K +L A D +R AAI QL+ + S Sbjct: 98 SRPPTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPLLVAADIYRPAAIKQLETLGKQLS 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 +A +A ++A+ + D ++IDTAGRLH + LM + ++ + Sbjct: 158 MPVFSLGDQVSPVEIAKQAIQKAKDEHHDYVLIDTAGRLHVDENLMDELKQVKEI----- 212 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P + V+DA TGQ+A+ + F+ G TG+++TK+DG RGG + + P+ Sbjct: 213 -SNPDEIFLVVDAMTGQDAVNVAQSFNEQLGLTGVVLTKLDGDTRGGAALSVKAVTNTPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ++G+GE ++ +EPF + ++ I G D Sbjct: 272 KYIGMGEKLDAIEPFHPERMASRILGMGD 300 >gi|308159913|gb|EFO62429.1| Signal recognition particle receptor [Giardia lamblia P15] Length = 571 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 65/197 (32%), Positives = 104/197 (52%), Gaps = 14/197 (7%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 RP+VI + GVNGVGKTT I KL + GL+ ++ A D+FRS A++QL+ +R A Sbjct: 366 RPYVICMTGVNGVGKTTSIAKLLYIFKNNGLRSLVCACDSFRSGAVEQLQEHCNRLGATL 425 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 G +A+A+A K+A++ D+ +IDT GR +NN LM +G ++ + Sbjct: 426 YSQGYGKNASAIAKYGIKEAESLNYDICLIDTTGRQYNNGPLMQALGALVL------ENT 479 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAV-------AGTTGLIMTKMDGTA-RGGGLIPIVVT 281 P VL V +A TG + Q++ F G G+I+TK D + G + + Sbjct: 480 PDVVLFVGEALTGNEGIEQLKQFDCALKSYTNSRGIDGIILTKFDTCGDKVGAALNLCFV 539 Query: 282 HKIPVYFLGVGEGINDL 298 +P+ ++G+G+ D Sbjct: 540 CDLPILYVGIGQSYPDF 556 >gi|298504758|gb|ADI83481.1| signal recognition particle protein [Geobacter sulfurreducens KN400] Length = 452 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 88/287 (30%), Positives = 143/287 (49%), Gaps = 14/287 (4%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVS 89 ++S + + +RE + +L+ +D+ V + VE + + V Q+V+ V Sbjct: 21 VMSEENIKEALRE-VRLVLLEADVNFKVVKDFVERVRVRAVGTQVLQSLTPGQQVIKIVQ 79 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 E + LM + + D + +P V I++VG+ G GKTT GKL++ + + +L D Sbjct: 80 EELVA-LMGGGEDNSLDLAAKPPVSIMMVGLQGAGKTTSCGKLARLLKGQRRRPLLVPAD 138 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 +R AAI+QLK + S + S D + EA + A DV+I+DTAGR + Sbjct: 139 VYRPAAIEQLKTLGRQLSVEVFDSRADQDPVDICREALRYATLNGFDVVILDTAGRHQID 198 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM +++R+ + P +L V DA TGQ A+ F+ TG+++TK+DG Sbjct: 199 EYLM---NELVRI---KEAAEPREILFVADAMTGQEAVNVASGFNDRLDITGVVLTKLDG 252 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 A+GG + I PV +GVGE ++ LE F A + I G D Sbjct: 253 DAKGGAALSIRAVTGKPVKLVGVGEKLDALEVFHADRLVSRILGMGD 299 >gi|197303265|ref|ZP_03168306.1| hypothetical protein RUMLAC_01988 [Ruminococcus lactaris ATCC 29176] gi|197297691|gb|EDY32250.1| hypothetical protein RUMLAC_01988 [Ruminococcus lactaris ATCC 29176] Length = 451 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 87/304 (28%), Positives = 151/304 (49%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ ++ S RL + V+ L ++ L+ +D+ V + ++++ + Sbjct: 3 FDSLSEKLQNVFKNLRSKGRLTEADVKAALREVKMALLEADVNFKVVKGFIKDVQERAIG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + +++ + VI++ G+ G GKTT KL Sbjct: 63 QDVMNGLNPGQMVIKIVNEELIRLMGSETTEIKLQPGSAITVIMMAGLQGAGKTTTTAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K G K +L A D +R AAI QL+I ++ + + A +A A + A Sbjct: 123 AGKFKLKGKKPLLVACDVYRPAAIKQLEINGEKQGVEVFSMGNKNKPADIAKAAMEHAAK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +++I+DTAGRLH + +MA + ++ + H + V+DA TGQ+A+ Sbjct: 183 NGNNIVILDTAGRLHIDEDMMAELQEIKEAV------TVHQTILVVDAMTGQDAVNVASS 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G G+I+TK+DG RGG + I P+ ++G+GE ++DLE F ++ I Sbjct: 237 FNDKIGIDGVIVTKLDGDTRGGAALSIKAVTGRPILYVGMGEKLSDLEQFYPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|67469473|ref|XP_650715.1| signal recognition particle protein SRP54 [Entamoeba histolytica HM-1:IMSS] gi|56467365|gb|EAL45328.1| signal recognition particle protein SRP54, putative [Entamoeba histolytica HM-1:IMSS] Length = 487 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/275 (28%), Positives = 141/275 (51%), Gaps = 14/275 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYD--VSELIHKMLMPLS 100 +E+E L+ D+ +++V + K ++D+ ++++ D ELI+ ++ P + Sbjct: 33 KEIETSLLGEDVNPIFIRQMVNNIKKKINSEDIPDGIDKRKLIKDSVFEELIN-LVDPKT 91 Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 + F + V+++VG+ G GKTT I KL+ + G K + DTFR+ A +QL++ Sbjct: 92 EAFKPK-KGKTCVLMMVGLQGAGKTTTITKLALYYKNRGYKPAVVGADTFRAGAYEQLQM 150 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A R F + SD +A E + + +K D++++DT+GR + L + + Sbjct: 151 NAKRAGVPFFGIKEESDPVKVASEGVRTFRKEKNDIILVDTSGRHKQDKELFKEMQSVRD 210 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 +K P S++ V+D GQ A Q + F +I+TK+DG + GGG + V Sbjct: 211 AIK------PDSIIFVMDGAIGQAAFGQAKAFKDAVEVGSVIITKLDGHSNGGGALSAVA 264 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 K P+ F+G GE +N++E F A+ F + G D Sbjct: 265 ATKSPIIFIGTGEKVNEIEEFDAESFVRKLLGMGD 299 >gi|229140489|ref|ZP_04269044.1| Signal recognition particle protein [Bacillus cereus BDRD-ST26] gi|228643050|gb|EEK99326.1| Signal recognition particle protein [Bacillus cereus BDRD-ST26] Length = 305 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/194 (37%), Positives = 105/194 (54%), Gaps = 11/194 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K ML A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ D ++IDTAGRLH + LM + K+ V K Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+DA TGQ+A+ + FH G TG+++TK+DG RGG + I P+ Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272 Query: 288 FLGVGEGINDLEPF 301 F G+GE ++ LE F Sbjct: 273 FAGMGEKLDALEAF 286 >gi|225714310|gb|ACO13001.1| Signal recognition particle 54 kDa protein [Lepeophtheirus salmonis] Length = 508 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 80/278 (28%), Positives = 138/278 (49%), Gaps = 12/278 (4%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLT----KRYAKDVSVQRVLYDVSEL-IHKMLM 97 +G+ +EL L+ +D+ + + K+ E + + A+ ++ ++++ + L + K++ Sbjct: 29 NGMLKELCAALLEADVNIRLVAKLRENVRGVINFEEMAQGLNKRQIIKEAVYLELVKLVD 88 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P +P+ + +V++ VG+ G GKTT KL+ G K L DTFR+ A DQ Sbjct: 89 PGVEPYTPK-KGKSNVVMFVGLQGSGKTTTCTKLAWYYQKKGWKACLVCADTFRAGAYDQ 147 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 LK A + F S D +A E + + +++I+DT+GR + L + Sbjct: 148 LKQNATKARIPFYGSYTEPDPVVIANEGVNMFKEEGFEIIIVDTSGRHYQEDALFE---E 204 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 M+ V ++P +++ V+DA+ GQ Q F +I +K+D A+GGG + Sbjct: 205 MLAVSNAVNPD---NIIFVMDASIGQACEAQARAFKEKVDVGSVITSKLDSHAKGGGALS 261 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 V K PV F+G GE I+D EPF K F + G D Sbjct: 262 AVAATKSPVVFIGTGEHIDDFEPFKTKPFVQKLLGMGD 299 >gi|30263848|ref|NP_846225.1| signal recognition particle protein [Bacillus anthracis str. Ames] gi|47529273|ref|YP_020622.1| signal recognition particle protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186695|ref|YP_029947.1| signal recognition particle protein [Bacillus anthracis str. Sterne] gi|227813247|ref|YP_002813256.1| signal recognition particle protein [Bacillus anthracis str. CDC 684] gi|229602210|ref|YP_002868082.1| signal recognition particle protein [Bacillus anthracis str. A0248] gi|254683447|ref|ZP_05147307.1| signal recognition particle protein [Bacillus anthracis str. CNEVA-9066] gi|254721376|ref|ZP_05183165.1| signal recognition particle protein [Bacillus anthracis str. A1055] gi|254735883|ref|ZP_05193589.1| signal recognition particle protein [Bacillus anthracis str. Western North America USA6153] gi|254739516|ref|ZP_05197213.1| signal recognition particle protein [Bacillus anthracis str. Kruger B] gi|254751176|ref|ZP_05203215.1| signal recognition particle protein [Bacillus anthracis str. Vollum] gi|254756724|ref|ZP_05208753.1| signal recognition particle protein [Bacillus anthracis str. Australia 94] gi|30258492|gb|AAP27711.1| signal recognition particle protein [Bacillus anthracis str. Ames] gi|47504421|gb|AAT33097.1| signal recognition particle protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49180622|gb|AAT55998.1| signal recognition particle protein [Bacillus anthracis str. Sterne] gi|227003495|gb|ACP13238.1| signal recognition particle protein [Bacillus anthracis str. CDC 684] gi|229266618|gb|ACQ48255.1| signal recognition particle protein [Bacillus anthracis str. A0248] Length = 449 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 110/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K ML A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ D ++IDTAG LH + LM + K+ V K Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGHLHIDEELMDELAKVKEVAK---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+DA TGQ+A+ + FH G TG+++TK+DG RGG + I P+ Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ LE F + ++ I G D Sbjct: 273 FAGMGEKLDALEAFHPERMASRILGMGD 300 >gi|86149828|ref|ZP_01068057.1| signal recognition particle protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597147|ref|ZP_01100383.1| signal recognition particle protein [Campylobacter jejuni subsp. jejuni 84-25] gi|218562348|ref|YP_002344127.1| signal recognition particle protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839646|gb|EAQ56906.1| signal recognition particle protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190836|gb|EAQ94809.1| signal recognition particle protein [Campylobacter jejuni subsp. jejuni 84-25] gi|112360054|emb|CAL34846.1| signal recognition particle protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315926824|gb|EFV06198.1| signal recognition particle protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929637|gb|EFV08818.1| signal recognition particle protein [Campylobacter jejuni subsp. jejuni 305] Length = 445 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 88/271 (32%), Positives = 142/271 (52%), Gaps = 15/271 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLT--KRYAKD--VSVQRVLYDVSELIHKMLMPLSKP 102 E L+ L+++D V K+ +ELLT + AK + ++ L + + +L K Sbjct: 30 ETLKKALLKAD----VHHKVTKELLTLIEEDAKQNGIGQKQFLNAIKINLENILSVNGKN 85 Query: 103 FNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 + F+ +P V+L+ G+ G GKTT KL+ + KV++AA D R AA++QL+ Sbjct: 86 QGFVFASKPPTVVLMAGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQL 145 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 + + E D +A EA K+A++ VDVL++DTAGRL + LM +R Sbjct: 146 CEANEIELFFIENEKDPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALM----DELRA 201 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 +K D P + V DA +GQ+ ++ F+ V G +G+I++K D +GG + I Sbjct: 202 VK--DVLNPDEIFYVADAMSGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAKQ 259 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 IP+ F+GVGE + DLE F+ + I G Sbjct: 260 IGIPLRFIGVGEKVADLEVFIPDRIVSRIMG 290 >gi|148985187|ref|ZP_01818426.1| glucose-inhibited division protein B [Streptococcus pneumoniae SP3-BS71] gi|147922632|gb|EDK73750.1| glucose-inhibited division protein B [Streptococcus pneumoniae SP3-BS71] gi|301800200|emb|CBW32808.1| signal recognition particle protein [Streptococcus pneumoniae OXC141] Length = 523 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 113/208 (54%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QAQ D ++IDTAGRL + +LM + + ++VL + Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLMNEL-RDVKVLAQ--- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|28197993|ref|NP_778307.1| signal recognition particle protein [Xylella fastidiosa Temecula1] gi|182680619|ref|YP_001828779.1| signal recognition particle protein [Xylella fastidiosa M23] gi|28056053|gb|AAO27956.1| signal recognition particle protein [Xylella fastidiosa Temecula1] gi|182630729|gb|ACB91505.1| signal recognition particle protein [Xylella fastidiosa M23] gi|307579077|gb|ADN63046.1| signal recognition particle protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 455 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 88/291 (30%), Positives = 152/291 (52%), Gaps = 17/291 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L I + RL ++ +RE E+ L+ +D+ ++V Q ++E + + Sbjct: 2 FESLTQRLSGTIERLRGRGRLTEENIREATREVRIALLEADVALSVVQALIERIKIRALG 61 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V Q ++ V + + ++ + N + P VIL+ G+ G GKT+++GKL Sbjct: 62 QEVLKSLTPGQALIKVVRDELAAVMGDSASELNLNVPA-PAVILLAGLQGAGKTSMVGKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + K VM+ + D +R AAI+QL+I +++ + S + + + A A+ Sbjct: 121 AKYLKEKRKKKVMVVSADVYRPAAIEQLRILSEQVNVLCFPSSVEQNPVDIVRAAIADAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 VDVL++DTAGRL + +M I + D P L V+D+ TGQ+A + Sbjct: 181 KSFVDVLLVDTAGRLAIDQGMMDEIKAL------HDTLVPVETLFVVDSMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 F TGLI+TK DG ARGGG + + P+ F+G GE ++DL+ F Sbjct: 235 AFSEALPLTGLILTKTDGDARGGGALSVRYITGRPIKFVGTGEKVDDLDVF 285 >gi|226305929|ref|YP_002765889.1| signal recognition particle protein [Rhodococcus erythropolis PR4] gi|229491376|ref|ZP_04385200.1| signal recognition particle protein [Rhodococcus erythropolis SK121] gi|226185046|dbj|BAH33150.1| signal recognition particle protein [Rhodococcus erythropolis PR4] gi|229321661|gb|EEN87458.1| signal recognition particle protein [Rhodococcus erythropolis SK121] Length = 525 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 94/318 (29%), Positives = 151/318 (47%), Gaps = 30/318 (9%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + D+ RL D E+ L+ +D+ + V + + ++ + Sbjct: 2 FESLSDRLTGSLKDLRGKGRLSGADIDATAREIRLALLEADVALPVVRSFIAKIKERAKG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + ++L ++ + + P VI++ G+ G GKTT+ GKL Sbjct: 62 AEVSGALNPAQQVVKIVNEELVEVLGGETRRLQFAKTP-PTVIMLAGLQGSGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--------------D 177 +K + D G +L A D R A+ QL+I +R A G+ D Sbjct: 121 AKWLKDQGHTPLLVACDLQRPGAVTQLQIVGERAGAAVFAPHPGTSIGGGENALGVSAAD 180 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 +A ++A+ K DV+I+DTAGRL +S LMA IR D P + VL Sbjct: 181 PVEVARAGVEEARNKHYDVVIVDTAGRLGIDSELMAQAAG-IR-----DAVNPDETIFVL 234 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA GQ+A+ + F G TG+++TK+DG ARGG + + P+ F GE + D Sbjct: 235 DAMIGQDAVSTADAFREGVGITGVVLTKLDGDARGGAALSVREVTGQPILFASTGEKLED 294 Query: 298 LEPFVAKDFSAVITGCLD 315 + F ++ I G D Sbjct: 295 FDVFHPDRMASRILGMGD 312 >gi|172057910|ref|YP_001814370.1| signal recognition particle protein [Exiguobacterium sibiricum 255-15] gi|171990431|gb|ACB61353.1| signal recognition particle protein [Exiguobacterium sibiricum 255-15] Length = 450 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 78/270 (28%), Positives = 135/270 (50%), Gaps = 15/270 (5%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V ++ V ++ + +DV Q+V+ V + + K++ P Sbjct: 39 LLEADVNFKVVKQFVNDVKERAVGQDVMTSLTPGQQVVKIVHDELTKLMGSEVSPLT--L 96 Query: 108 SHRPH-VILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 S+RP VI++ G+ G GKTT +GKL+ + +L A D +R AAI QL+ + Sbjct: 97 SNRPPTVIMMTGLQGAGKTTTVGKLANHLRKKQNRSPLLVAADIYRPAAIKQLETLGKQL 156 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + A A+ D+++IDTAGRLH + LM + + + K Sbjct: 157 ELPVFSMGDQVSPQEIVTNALDYAKEHHHDIVLIDTAGRLHIDEDLMQELVDVKEIAK-- 214 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P+ + V+D+ TGQ+A+ + F+ G TG+++TK+DG RGG + I P Sbjct: 215 ----PNEIFLVVDSMTGQDAVNVAQSFNEKLGVTGVVLTKLDGDTRGGAALSIKAVTGAP 270 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F+G+GE ++ +EPF + ++ I G D Sbjct: 271 IKFVGLGEKLDAIEPFYPERMASRILGMGD 300 >gi|148994098|ref|ZP_01823438.1| glucose-inhibited division protein B [Streptococcus pneumoniae SP9-BS68] gi|168489114|ref|ZP_02713313.1| signal recognition particle protein [Streptococcus pneumoniae SP195] gi|147927451|gb|EDK78480.1| glucose-inhibited division protein B [Streptococcus pneumoniae SP9-BS68] gi|183572579|gb|EDT93107.1| signal recognition particle protein [Streptococcus pneumoniae SP195] Length = 523 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QAQ D ++IDTAGRL + +LM +R +K L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVCHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|3334340|sp|O15821|SRP54_ENTHI RecName: Full=Signal recognition particle 54 kDa protein; Short=SRP54 gi|17980209|gb|AAL50553.1| signal recognition particle 54 kDa subunit SRP54 [Entamoeba histolytica] Length = 487 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/275 (28%), Positives = 141/275 (51%), Gaps = 14/275 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYD--VSELIHKMLMPLS 100 +E+E L+ D+ +++V + K ++D+ ++++ D ELI+ ++ P + Sbjct: 33 KEIETSLLGEDVNPIFIRQMVNNIKKKINSEDIPDGIDKRKLIKDSVFEELIN-LVDPKT 91 Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 + F + V+++VG+ G GKTT I KL+ + G K + DTFR+ A +QL++ Sbjct: 92 EAFKPK-KGKTCVLMMVGLQGAGKTTTITKLALYYKNRGYKPAVVGADTFRAGAYEQLQM 150 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A R F + SD +A E + + +K D++++DT+GR + L + + Sbjct: 151 NAKRAGVPFFGIKEESDPVKVASEGVRTFRKEKNDIILVDTSGRHKQDKELFKEMQSVRD 210 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 +K P S++ V+D GQ A Q + F +I+TK+DG + GGG + V Sbjct: 211 AIK------PDSIIFVMDGAIGQAAFGQAKAFKDAVEVGSVIITKLDGHSNGGGALSAVA 264 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 K P+ F+G GE +N++E F A+ F + G D Sbjct: 265 ATKSPIIFIGTGEKVNEIEEFDAESFVRQLLGMGD 299 >gi|256384407|gb|ACU78977.1| signal recognition particle protein [Mycoplasma mycoides subsp. capri str. GM12] gi|256385239|gb|ACU79808.1| signal recognition particle protein [Mycoplasma mycoides subsp. capri str. GM12] gi|296455407|gb|ADH21642.1| signal recognition particle protein [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 447 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 84/283 (29%), Positives = 148/283 (52%), Gaps = 18/283 (6%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 ++ ++E L+++ L+ +D+ + A++I+ + K +S Q+++ V E + Sbjct: 26 EENIKETLKEIRLSLLEADVNIEAAKEIINNVKQKALGGYISEGASAHQQMIKIVHEELV 85 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRS 152 +L + P D + +P V+++VG+ G GKTT KL+ ++ K +L G D +R Sbjct: 86 NILGKENAPL--DINKKPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKKVLLVGLDIYRP 143 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AI+QL +T+ V + D A +A + A+ DV+I+DTAGRL + LM Sbjct: 144 GAIEQLVQLGQKTNTQ-VFEKGKQDPVKTAEQALQYAKENNFDVVILDTAGRLQVDQFLM 202 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 K + LK+ +P+ +L V+D +GQ + F++ +G+++TK+DG ARG Sbjct: 203 ----KELDNLKK--KTSPNEILLVVDGMSGQEIINVTNEFNSKLKLSGVVVTKLDGDARG 256 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + I K+P+ F+G GEG N L F K + + G D Sbjct: 257 GATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGMGD 299 >gi|134095939|ref|YP_001101014.1| GTP-binding signal recognition particle protein [Herminiimonas arsenicoxydans] Length = 396 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 118/222 (53%), Gaps = 11/222 (4%) Query: 81 VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140 VQR +++ ++ L P + N+ + P +IL+ G+ G GKTT +GKL+K + + Sbjct: 19 VQR---ELAAIMGADLGPEASQLNF-ATQPPAIILMAGLQGAGKTTTVGKLAKYLREQKK 74 Query: 141 K-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199 K V+ + D +R AAI QLK ++ ADF SEI +A A A+ DVLII Sbjct: 75 KKVLTVSADVYRPAAIGQLKTVTEQVGADFFPSEITDKPVDIALAALDYAKRHYHDVLII 134 Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 DTAGRL + +M I + +K P L V+DA GQ+A+ + F T Sbjct: 135 DTAGRLGIDEAMMQEISAIHAAVK------PIETLFVVDAMLGQDAINTAKAFSDALPLT 188 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 G+++TK+DG +RGG + + P+ F GV E ++ LE F Sbjct: 189 GIVLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAF 230 >gi|54020010|ref|YP_115574.1| signal recognition particle protein [Mycoplasma hyopneumoniae 232] gi|53987183|gb|AAV27384.1| signal recognition particle protein [Mycoplasma hyopneumoniae 232] Length = 440 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 98/322 (30%), Positives = 155/322 (48%), Gaps = 34/322 (10%) Query: 17 LTKGFASTSLKLKEGIT----DIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 LT S+ KL++ +T D++ +R + + E +LL+ D V +++++ L Sbjct: 5 LTNRIQSSLKKLQKSLTINESDLVEITREIRLALLEADVNLLVVKDFISKVKTQVLKQGL 64 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPL----SKPFNWDFSHRPHVILVVGVNGVGKTTV 127 T + ++L H+ L+ + SK N F+ P +I++VG+ G GKTT Sbjct: 65 TSKLNPQQEFLKIL-------HQNLVEILGINSKSIN--FNKTPTIIMLVGLQGSGKTTT 115 Query: 128 IGKLS--KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 KL+ + K++L A DT+R AAIDQLK + + E +A EA Sbjct: 116 AAKLAVFARQKKLAKKILLVACDTYRPAAIDQLKQLGKQVLIEVFYVE--KSPVQIAKEA 173 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 ++ D++I DTAGRL N LM + ++ +K P +L +LDA +GQ+ Sbjct: 174 LIYSKNNDFDLVIFDTAGRLSINEELMNELSEIKENIK------PDQILFILDALSGQDI 227 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + ++F+ TG I+TK+D AR G + I KIPV LG GE I+ LE F Sbjct: 228 INVAQIFNQKINLTGAIITKLDSNARAGAALSITHLLKIPVLLLGTGEKISALELFHPNR 287 Query: 306 FSAVITG------CLDYGEEKI 321 + I G L+ EE I Sbjct: 288 MADRILGMGDVRSLLEQAEENI 309 >gi|159118036|ref|XP_001709237.1| Signal recognition particle receptor [Giardia lamblia ATCC 50803] gi|157437353|gb|EDO81563.1| Signal recognition particle receptor [Giardia lamblia ATCC 50803] Length = 571 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 66/197 (33%), Positives = 104/197 (52%), Gaps = 14/197 (7%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 RP+VI + GVNGVGKTT I KL + GL+ ++ A D+FRS A++QL+ +R A Sbjct: 366 RPYVICMTGVNGVGKTTSIAKLLYIFKNNGLRSLVCACDSFRSGAVEQLQEHCNRLGATL 425 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 G +A+A+A K+A++ D+ +IDT GR +NN LM +G ++ +A Sbjct: 426 YSQGYGKNASAIAKYGIKEAESLNYDICLIDTTGRQYNNGPLMQALGALVL------ENA 479 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAV-------AGTTGLIMTKMDGTA-RGGGLIPIVVT 281 P VL V +A TG + Q++ F G G+I+TK D + G + + Sbjct: 480 PDVVLFVGEALTGNEGVEQLKQFDCALKSYTNSRGIDGIILTKFDTCGDKVGAALNLCFV 539 Query: 282 HKIPVYFLGVGEGINDL 298 +P+ ++G G+ D Sbjct: 540 CDLPILYVGTGQSYPDF 556 >gi|257205636|emb|CAX82469.1| Signal recognition particle 54 kDa protein [Schistosoma japonicum] Length = 532 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 73/218 (33%), Positives = 113/218 (51%), Gaps = 10/218 (4%) Query: 90 ELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 EL+H ++ P K W + P+VI++VG+ G GKTT KL+ G K + D Sbjct: 82 ELVH-LVDPQVKA--WQPARGSPNVIMLVGLQGCGKTTTATKLAYFYQRKGWKTCMICAD 138 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+ A DQLK A + F S +D +A + ++ +K +++I+DT+GR Sbjct: 139 TFRAGAFDQLKQNATKARIPFYGSYTETDPVVIARDGVQKFVEEKFEIIIVDTSGRHRQE 198 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 L +M++V ++ P V+ VLDA+ GQ Q F A + +I+TK+DG Sbjct: 199 DSLFE---EMLQVSNAIE---PDHVIYVLDASIGQACEAQASAFKAKVDVSSVIVTKLDG 252 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 A+GGG + V P+ F+G GE + D E F + F Sbjct: 253 HAKGGGALSAVAATHSPITFIGTGEHVEDFEQFRVQPF 290 >gi|315607956|ref|ZP_07882949.1| signal recognition particle protein [Prevotella buccae ATCC 33574] gi|315250425|gb|EFU30421.1| signal recognition particle protein [Prevotella buccae ATCC 33574] Length = 447 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 69/196 (35%), Positives = 105/196 (53%), Gaps = 7/196 (3%) Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRT 165 +RP +IL+ G+ G GKTT GKL+ + K +L A D +R AAIDQLK+ ++ Sbjct: 95 LKNRPAIILMSGLQGSGKTTFSGKLANMLKTKEHKNPLLVACDVYRPAAIDQLKVVGEQV 154 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 D A+A A K+A+AK DV+IIDTAGRL + +M I + + + Sbjct: 155 GVPVYAEPDNKDVIAIAANALKEAKAKNYDVVIIDTAGRLAVDEQMMTEISNLKQAVN-- 212 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + I P Sbjct: 213 ----PDETLFVVDSMTGQDAVNTAKEFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVTKP 268 Query: 286 VYFLGVGEGINDLEPF 301 + F+G GE + ++ F Sbjct: 269 IKFIGTGEKMEAIDVF 284 >gi|156554455|ref|XP_001604233.1| PREDICTED: similar to Srp54 protein [Nasonia vitripennis] Length = 444 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 105/206 (50%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 RP+VI+ VG+ G GKTT KL+ K L DTFR+ A DQ+K A + F Sbjct: 100 RPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQIKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E + +++I+DT+GR L +M++V + P Sbjct: 160 YGSYTEVDPVVIAQEGVDMFIKEGYEIIIVDTSGRHKQEESLFE---EMLQVSNAVQPD- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DAT GQ Q + F +I+TK+DG A+GGG + V + PV F+ Sbjct: 216 --NIIFVMDATIGQACEAQAKAFKERVNVGSIIITKLDGHAKGGGALSAVAATQSPVIFV 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+DLEPF K F + + G D Sbjct: 274 GTGEHIDDLEPFKTKPFISKLLGMGD 299 >gi|39995748|ref|NP_951699.1| signal recognition particle protein [Geobacter sulfurreducens PCA] gi|39982512|gb|AAR33972.1| signal recognition particle protein [Geobacter sulfurreducens PCA] Length = 452 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 88/287 (30%), Positives = 143/287 (49%), Gaps = 14/287 (4%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVS 89 ++S + + +RE + +L+ +D+ V + VE + + V Q+V+ V Sbjct: 21 VMSEENIKEALRE-VRLVLLEADVNFKVVKDFVERVRVRAVGTQVLQSLTPGQQVIKIVQ 79 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 E + LM + + D + +P V I++VG+ G GKTT GKL++ + + +L D Sbjct: 80 EELVA-LMGGGEDNSLDLAAKPPVPIMMVGLQGAGKTTSCGKLARLLKGQRRRPLLVPAD 138 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 +R AAI+QLK + S + S D + EA + A DV+I+DTAGR + Sbjct: 139 VYRPAAIEQLKTLGRQLSVEVFDSRADQDPVDICREALRYATLNGFDVVILDTAGRHQID 198 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM +++R+ + P +L V DA TGQ A+ F+ TG+++TK+DG Sbjct: 199 EYLM---NELVRI---KEAAEPREILFVADAMTGQEAVNVASGFNDRLDITGVVLTKLDG 252 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 A+GG + I PV +GVGE ++ LE F A + I G D Sbjct: 253 DAKGGAALSIRAVTGKPVKLVGVGEKLDALEVFHADRLVSRILGMGD 299 >gi|332797104|ref|YP_004458604.1| GTP-binding signal recognition particle SRP54 G-domain-containing protein [Acidianus hospitalis W1] gi|332694839|gb|AEE94306.1| GTP-binding signal recognition particle SRP54 G-domain protein [Acidianus hospitalis W1] Length = 449 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 87/283 (30%), Positives = 138/283 (48%), Gaps = 28/283 (9%) Query: 47 EELEDLLIRSDIGV----AVAQKIVEELLTKRYAKDVSVQ----RVLYDVSELIHKMLMP 98 +EL+ LI +D+ V ++ KI E L ++ + + +++YD Sbjct: 28 KELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYD----------E 77 Query: 99 LSKPFNWDFSHR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 LS F D + P+VI++VGV G GKTT GKL+ G KV L D +R Sbjct: 78 LSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 137 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AA++QL+ ++ DA +A ++ +K++++I+DTAGR H Sbjct: 138 AALEQLQQLGEQIGVPVYGEPGEKDAVGIAKRGVEKFLNEKMEIIIVDTAGR-HGYGEEA 196 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 A + +M + + + P V V+DA+ GQ A F+ + +I+TKMDGTA+G Sbjct: 197 ALLEEMKNIYEAI---KPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKG 253 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 GG + V + F+G GE I++LE F + F A I G D Sbjct: 254 GGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARILGMGD 296 >gi|257058483|ref|YP_003136371.1| signal recognition particle protein [Cyanothece sp. PCC 8802] gi|256588649|gb|ACU99535.1| signal recognition particle protein [Cyanothece sp. PCC 8802] Length = 492 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 70/193 (36%), Positives = 102/193 (52%), Gaps = 10/193 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VIL+ G+ G GKTT KL+ + ++ A D +R AAIDQL + + Sbjct: 100 PTVILMAGLQGTGKTTATAKLALYLRKQKRSCLMVATDIYRPAAIDQLITLGQQI--EVP 157 Query: 171 CSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 E+GS+A +A + ++A+ VD ++IDTAGRL + +M + ++ +K Sbjct: 158 VFELGSEANPVDIARQGVEKAKELGVDTVLIDTAGRLQIDESMMVELARIKEAVK----- 212 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P L V+DA TGQ A FH G TG I+TKMDG RGG + + P+ F Sbjct: 213 -PDDTLLVVDAMTGQEAANLTRTFHEQIGITGAILTKMDGDTRGGAALSVRQISGQPIKF 271 Query: 289 LGVGEGINDLEPF 301 +GVGE + L+PF Sbjct: 272 IGVGEKVEALQPF 284 >gi|309775679|ref|ZP_07670678.1| signal recognition particle protein [Erysipelotrichaceae bacterium 3_1_53] gi|308916585|gb|EFP62326.1| signal recognition particle protein [Erysipelotrichaceae bacterium 3_1_53] Length = 471 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 90/302 (29%), Positives = 151/302 (50%), Gaps = 22/302 (7%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A ESLS +L K F + + K K +S + ++D +RE + L+ +D+ V + Sbjct: 1 MAFESLS--ERLGKAFKNITGKGK------LSEKNMNDMLRE-VRMSLLEADVNYGVVKD 51 Query: 66 IVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + + + +V Q V+ V + I +L P N+ S+ +++VG+ Sbjct: 52 FIARVKEQALGTEVMNSLNPGQMVVKIVHDEIVALLGSEDAPVNYK-SNGITTVMMVGLQ 110 Query: 121 GVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 G GKTT K++ M K +L A D R AAI+QLK + + + + A Sbjct: 111 GTGKTTASAKIANVMKKKQNRKPLLVACDVIRPAAIEQLKTLGESIGVEVFSLGVETKAL 170 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A +A + A+ D ++ DTAGRLH + LM + + + P +L +DA Sbjct: 171 ETAKQAMEYAKENGYDTVLFDTAGRLHIDEELMQELSDIKAYVH------PDDILLTVDA 224 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQ+ + FH TGL++TK+DG +RGGG++ + ++PV F+G+GE I+DL+ Sbjct: 225 MTGQDIVNVASSFHEQLDVTGLVLTKLDGDSRGGGILSVRSITQVPVKFVGLGEKIDDLD 284 Query: 300 PF 301 F Sbjct: 285 VF 286 >gi|148265784|ref|YP_001232490.1| signal recognition particle protein [Geobacter uraniireducens Rf4] gi|146399284|gb|ABQ27917.1| signal recognition particle subunit FFH/SRP54 (srp54) [Geobacter uraniireducens Rf4] Length = 449 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 88/290 (30%), Positives = 143/290 (49%), Gaps = 20/290 (6%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLY 86 +++ + D +RE + L+ +D+ V + VE + K V V ++++ Sbjct: 21 VMTEENIKDALRE-VRLALLEADVNFKVVKDFVERVREKAVGTQVLQSLSPGQQVVKIVH 79 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 D EL+ LM + + D + +P V I++VG+ G GKTT GKL++ + K ++ Sbjct: 80 D--ELVS--LMGGGEDNSLDLAAKPPVAIMMVGLQGAGKTTTCGKLARYLKAQRRKPLMV 135 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 D +R AAI+QLK + S + S+ + A K A+ D +I DTAGR Sbjct: 136 PADVYRPAAIEQLKTLGRQLSIEVYDSQADQKPLDICRNALKYAELSGFDTVIFDTAGRH 195 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 + LM +++ + +D P +L V DA TGQ A+ F G TG+++TK Sbjct: 196 QIDEYLM---DELVHIRDAVD---PREILFVADAMTGQEAVNVAAGFDERLGITGVVLTK 249 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +DG A+GG + I PV F+G+GE ++ LE F A + I G D Sbjct: 250 LDGDAKGGAALSIKAVSGKPVKFVGLGEKLDALEVFHADRLVSRILGMGD 299 >gi|332295825|ref|YP_004437748.1| GTP-binding signal recognition particle SRP54 G- domain protein [Thermodesulfobium narugense DSM 14796] gi|332178928|gb|AEE14617.1| GTP-binding signal recognition particle SRP54 G- domain protein [Thermodesulfobium narugense DSM 14796] Length = 437 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 84/258 (32%), Positives = 130/258 (50%), Gaps = 22/258 (8%) Query: 52 LLIRSDIGVAVAQKIVEE----LLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNW 105 L + SDI ++ +KIVEE L T + + S ++ ++ ELI+ L KP N Sbjct: 37 LFLESDIALSATKKIVEEIKNRLSTLEFTTETSPGTLVSNIVREELINL----LGKPGNI 92 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 DFS +P ++++VG+ G GKTT K++ + K +L D R AA QL+ + + Sbjct: 93 DFSEKPTLVMMVGIQGSGKTTTSAKIANYFATKENKKPLLVGADVRRPAAQLQLEKLSQQ 152 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 F + D A A++K D++I+DTAGR H + +++ LK Sbjct: 153 IKIPFFTDK---DPFLACEGALNLARSKGYDLIIVDTAGRTHVDE-------ELLDELKT 202 Query: 225 LDPH-APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 L+ P + + V+D+ GQ A + + F TG I+TK DG ARGG + Sbjct: 203 LNERFQPKNNILVIDSMMGQEATKVAKAFFNTIPLTGAILTKFDGDARGGAAFSLREVTG 262 Query: 284 IPVYFLGVGEGINDLEPF 301 +P+ FLGVGE I +LE F Sbjct: 263 VPLIFLGVGEKIQNLEKF 280 >gi|148643420|ref|YP_001273933.1| signal recognition particle protein Srp54 [Methanobrevibacter smithii ATCC 35061] gi|222445662|ref|ZP_03608177.1| hypothetical protein METSMIALI_01303 [Methanobrevibacter smithii DSM 2375] gi|288869608|ref|ZP_05975207.2| signal recognition particle protein [Methanobrevibacter smithii DSM 2374] gi|148552437|gb|ABQ87565.1| signal recognition particle GTPase SRP54 [Methanobrevibacter smithii ATCC 35061] gi|222435227|gb|EEE42392.1| hypothetical protein METSMIALI_01303 [Methanobrevibacter smithii DSM 2375] gi|288860574|gb|EFC92872.1| signal recognition particle protein [Methanobrevibacter smithii DSM 2374] Length = 447 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 84/289 (29%), Positives = 146/289 (50%), Gaps = 22/289 (7%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVSVQR----VLY 86 +I + +++ V+E ++ LI+SD+ +A+ ++KI + L + K ++ + ++Y Sbjct: 23 VIDKKTIEEVVKE-IQRALIQSDVNIALVLDLSKKIKKRALEEEPPKGITPREHVITIIY 81 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + E+++ L+ P D +P+ IL +G+ G GKTT IGKL + + G + Sbjct: 82 E--EMVN--LLGGEAP-GLDIDVKPYKILFLGLQGSGKTTTIGKLCRYLQKKGFNPAVVC 136 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 DT+R AA +QL+ + DA LA + K+ + +KV +I DTAGR Sbjct: 137 TDTWRPAAYEQLRQLTEEMQVPLYGDPDNKDALDLAQKGLKEFKNRKV--IIFDTAGRHK 194 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 L+A + + +++ P + V+D T GQ A Q + F +I+TK+ Sbjct: 195 QEEDLIAEMDTLDDIIQ------PTESILVIDGTIGQQAGEQAKAFSQATDVGSIIITKL 248 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG+A+GGG + V P+ F+G GE I+D E F F + + G D Sbjct: 249 DGSAKGGGAMSAVAETGAPIKFIGTGERIDDFELFDPARFISRLLGMGD 297 >gi|293601987|ref|ZP_06684443.1| signal recognition particle protein [Achromobacter piechaudii ATCC 43553] gi|292819610|gb|EFF78635.1| signal recognition particle protein [Achromobacter piechaudii ATCC 43553] Length = 468 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 93/289 (32%), Positives = 140/289 (48%), Gaps = 30/289 (10%) Query: 48 ELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL-SKP 102 E+ L+ +D+ + V ++ V E+ L + A +S + L V +HK L L Sbjct: 33 EVRMALLEADVALPVVREFVARVKEKALGEEVAASLSPGQALVGV---VHKELTALMGGD 89 Query: 103 FNWDFS------HRPHVILVVGVNGVGKTTVIGKLSKKMSDA----------GLKVMLAA 146 D + P VIL+ G+ G GKTT GKL++ +S+ KV++ + Sbjct: 90 LGADSNELSLAVQPPAVILMAGLQGAGKTTTTGKLARWLSEGQHTQHGRKTGKKKVLVVS 149 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 D +R AAIDQLK A + DF+ S+ +A A A+ DVLI+DTAGRL Sbjct: 150 ADVYRPAAIDQLKSVAAQVGVDFLQSDPSQKPEDIARGAVDHARRHHYDVLILDTAGRLG 209 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + +M + IR L D P L V+DA GQ+A+ F TG+++TK+ Sbjct: 210 IDEAMM----REIRALH--DLVKPVETLFVVDAMQGQDAVNTARAFADALPLTGVVLTKL 263 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG ARGG + + P+ F+GV E ++ LEPF + + G D Sbjct: 264 DGDARGGAALSVRHVTGKPLKFVGVSEKLDGLEPFYPDRMAQRVLGMGD 312 >gi|218245446|ref|YP_002370817.1| signal recognition particle protein [Cyanothece sp. PCC 8801] gi|218165924|gb|ACK64661.1| signal recognition particle protein [Cyanothece sp. PCC 8801] Length = 492 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 70/193 (36%), Positives = 102/193 (52%), Gaps = 10/193 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VIL+ G+ G GKTT KL+ + ++ A D +R AAIDQL + + Sbjct: 100 PTVILMAGLQGTGKTTATAKLALYLRKQKRSCLMVATDIYRPAAIDQLITLGQQI--EVP 157 Query: 171 CSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 E+GS+A +A + ++A+ VD ++IDTAGRL + +M + ++ +K Sbjct: 158 VFELGSEANPVDIARQGVEKAKELGVDTVLIDTAGRLQIDESMMVELARIKEAVK----- 212 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P L V+DA TGQ A FH G TG I+TKMDG RGG + + P+ F Sbjct: 213 -PDDTLLVVDAMTGQEAANLTRTFHEQIGITGAILTKMDGDTRGGAALSVRQISGQPIKF 271 Query: 289 LGVGEGINDLEPF 301 +GVGE + L+PF Sbjct: 272 IGVGEKVEALQPF 284 >gi|153810630|ref|ZP_01963298.1| hypothetical protein RUMOBE_01014 [Ruminococcus obeum ATCC 29174] gi|149833026|gb|EDM88108.1| hypothetical protein RUMOBE_01014 [Ruminococcus obeum ATCC 29174] Length = 448 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 83/280 (29%), Positives = 148/280 (52%), Gaps = 23/280 (8%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML----- 96 +E++ L+ +D+ V ++ + + + +DV Q V+ V+E + ++ Sbjct: 33 KEVKMALLEADVNFRVVKQFTKSVQERAVGQDVMNGLNPGQMVIKIVNEELVNLMGSETT 92 Query: 97 -MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 +PL KP N D + V+++ G+ G GKTT + KL+ K+ G + +L A D +R AAI Sbjct: 93 DLPL-KPGN-DIT----VLMMAGLQGAGKTTTVAKLAGKLKSKGKRPLLVACDVYRPAAI 146 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 QL++ ++ + + +A A + A+A + +V++IDTAGRLH + +M + Sbjct: 147 TQLQVNGEKQGVEVFSMGDKQNPVDIAKAAIEHAKANQQNVVLIDTAGRLHVDEDMMQEL 206 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 + + + + ++L V DA TGQ+A+ + F G G+I+TKMDG RGG Sbjct: 207 ADI-----KANVNVDCTILTV-DAMTGQDAVNVAKTFAEKVGIDGVILTKMDGDTRGGAA 260 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+G+GE ++DLE F + ++ I G D Sbjct: 261 LSIKAVTGKPILFVGMGEKLSDLEQFYPERMASRILGMGD 300 >gi|15903209|ref|NP_358759.1| signal recognition particle protein [Streptococcus pneumoniae R6] gi|116515651|ref|YP_816611.1| signal recognition particle protein [Streptococcus pneumoniae D39] gi|15458797|gb|AAK99969.1| Signal recognition particle (Fifty four homolog) [Streptococcus pneumoniae R6] gi|116076227|gb|ABJ53947.1| signal recognition particle protein [Streptococcus pneumoniae D39] Length = 523 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMVAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QAQ D ++IDTAGRL + +LM +R +K L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|313158014|gb|EFR57420.1| signal recognition particle protein [Alistipes sp. HGB5] Length = 441 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 87/273 (31%), Positives = 135/273 (49%), Gaps = 10/273 (3%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNW 105 +E+ LI +D+ VA+ +E+ K +DV + +++++ L L Sbjct: 32 KEIRRALIDADVNYKVAKSFTDEVKQKALGQDVLKAVKPGQMMTKIVRDELALLMGGTAT 91 Query: 106 D--FSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWA 162 D P VIL+ G+ G GKTT GKL+ + S G +V+L AGD +R AAIDQLK+ Sbjct: 92 DIRLEGNPAVILIAGLQGSGKTTFSGKLALFIKSKKGRQVLLVAGDVYRPAAIDQLKVLG 151 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 + + E D +A A K A+ +V+I+DTAGRL + +M I + + Sbjct: 152 GQIGVEVYTEEGSKDPVQIAENAIKYARQHAFNVVIVDTAGRLAVDEAMMQEITAIKTAV 211 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 K P L V+DA TGQ+A+ F+ G+++TK+DG RGG I I Sbjct: 212 K------PSETLFVVDAMTGQDAVNTAREFNDRLDFDGVVLTKLDGDTRGGAAISIRSVV 265 Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+ GE ++ L+ F + + I G D Sbjct: 266 NKPLKFISSGEKMDALQVFHPERMADRILGMGD 298 >gi|332880672|ref|ZP_08448345.1| signal recognition particle protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681306|gb|EGJ54230.1| signal recognition particle protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 450 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 86/279 (30%), Positives = 140/279 (50%), Gaps = 13/279 (4%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99 V E L+D+ L+ +D+ VA+ + + K ++V + + + +++H L L Sbjct: 26 NVAETLKDVRRALLDADVNYKVAKTFTDTVKQKALGQNVLTAVKPSQLMVKIVHDELATL 85 Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAID 156 + + P VIL+ G+NG GKTT+ GKL+ + K +LAA D +R AAI+ Sbjct: 86 MGGETAELNLQGHPSVILMAGLNGAGKTTLSGKLALMLKTKKRKNPLLAACDIYRPAAIE 145 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QLK+ ++ DA +A A K+A+AK DV+I+DTAGRL + +M I Sbjct: 146 QLKVLGEQIGIPVYSEPDNKDAVQIAQNAVKEAKAKGYDVVIVDTAGRLAVDEQMMQEIA 205 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + + P L V+DA TGQ+A+ + F+ G+++TK+DG RGG + Sbjct: 206 AIKHGIN------PDETLFVVDAMTGQDAVNTAKEFNDRLDFDGVVLTKLDGDTRGGAAL 259 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I P+ F+G GE + ++ F + I G D Sbjct: 260 SIRTVVNKPIKFVGTGEKMEAIDQFHPSRMADRILGMGD 298 >gi|84489410|ref|YP_447642.1| hypothetical protein Msp_0601 [Methanosphaera stadtmanae DSM 3091] gi|84372729|gb|ABC56999.1| partially conserved hypothetical protein, predicted GTPase [Methanosphaera stadtmanae DSM 3091] Length = 550 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 89/263 (33%), Positives = 141/263 (53%), Gaps = 24/263 (9%) Query: 53 LIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYD-----VSELI----HKMLMPL 99 LI D+ VA++IVE +L+ K+ + ++ + ++E+I + +L + Sbjct: 282 LIEGDVAFDVAERIVESVKEDLIGKKIKRRGDMELFTTNALKKAITEIIDNGYYDLLGDI 341 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 K P+ I+ VG+NG GKTT I K++ + G + A DTFR+ AI+QL+ Sbjct: 342 EKSKE---KGEPYKIMFVGINGTGKTTTIAKIATYLEKHGYSSVFGASDTFRAGAIEQLE 398 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 A+ + + E SD AA+A++A + A+A DV++IDT+GR+ N+ LM + K+ Sbjct: 399 HHANNLNLKIIKHERNSDPAAVAFDAVEHAKASGKDVVLIDTSGRMQTNANLMDEMKKIK 458 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI- 278 RV + P V+ V DA G +A Q F+ V G+I+TK D A+GG I I Sbjct: 459 RVSQ------PDIVIYVGDALMGNDATEQASKFNEVIDIDGIILTKADADAKGGAAISIG 512 Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301 V HK P+ F+G G+ +DL F Sbjct: 513 HVIHK-PILFIGTGQSYDDLMEF 534 >gi|91772216|ref|YP_564908.1| signal recognition particle protein Srp54 [Methanococcoides burtonii DSM 6242] gi|121686981|sp|Q12ZG8|SRP54_METBU RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|91711231|gb|ABE51158.1| signal recognition particle SRP54 [Methanococcoides burtonii DSM 6242] Length = 439 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 74/211 (35%), Positives = 109/211 (51%), Gaps = 10/211 (4%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 D +P I+++G+ G GKTT KLS+ GLK + DTFR A QLK D+ Sbjct: 92 DIPLKPQTIMMIGLQGSGKTTTTSKLSRYFQRKGLKPAVICADTFRPGAYQQLKTLCDKL 151 Query: 166 SADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + F E+G+ DA + A+ K DVLI+DTAGR + L+ + ++ + + Sbjct: 152 NVPFY-GEVGNPDAVGIVERGL--AELGKNDVLIVDTAGRHSLEADLIDEMEQIHEIAQ- 207 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P L VLD GQ A Q F+ G +G++++K+DGTA+GGG + V Sbjct: 208 -----PDYKLLVLDGAIGQQASEQARAFNDSVGISGVVISKLDGTAKGGGALSAVSETNS 262 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F+GVGE +DLE F F + + G D Sbjct: 263 AIAFIGVGETPDDLEKFEPDRFISRLLGMGD 293 >gi|295109860|emb|CBL23813.1| signal recognition particle protein [Ruminococcus obeum A2-162] Length = 448 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 78/274 (28%), Positives = 140/274 (51%), Gaps = 11/274 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSK 101 +E++ L+ +D+ V ++ + + + +DV Q V+ V+E + ++ + Sbjct: 33 KEVKMALLEADVNFKVVKQFTKAVQERAVGQDVMNGLNPGQMVIKIVNEELVSLMGSETT 92 Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 + VI++ G+ G GKTT + KL+ K+ G + +L A D +R AAI QL++ Sbjct: 93 ELPLKQGNEITVIMMAGLQGAGKTTTVAKLAGKLKSKGKRPLLVACDVYRPAAITQLQVN 152 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 ++ + + +A A + A+A + +V++IDTAGRLH + +M + I+ Sbjct: 153 GEKQGVEVFSMGDKQNPVDIAKAAIEHAKANQQNVVLIDTAGRLHVDENMMQELAD-IKA 211 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 +D L +DA TGQ+A+ + F G G+I+TKMDG RGG + I Sbjct: 212 NVNVD-----CTLLTVDAMTGQDAVNVAKTFAEKVGIDGVILTKMDGDTRGGAALSIKAV 266 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ ++G+GE ++DLE F + ++ I G D Sbjct: 267 TGKPILYVGMGEKLSDLEQFYPERMASRILGMGD 300 >gi|219684207|ref|ZP_03539151.1| signal recognition particle protein [Borrelia garinii PBr] gi|219672196|gb|EED29249.1| signal recognition particle protein [Borrelia garinii PBr] Length = 444 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 84/284 (29%), Positives = 143/284 (50%), Gaps = 18/284 (6%) Query: 42 DDGVREELE---DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 D + E +E + L+ +D+ + V ++ + ++ + +K V V R + S+ I + Sbjct: 24 DKNISEAIEIIKNSLVDADVNLRVVRRFLNSIIEE--SKGVKVLRGIDPKSQFIKIVNDN 81 Query: 99 LSKPF---NWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 L K +++ S P IL++G+ G GKTT KLS ++ KV+L A DTFR Sbjct: 82 LVKFLGGKSYELSLHPVNKQSYILMLGLQGSGKTTTCAKLSLRLKKENRKVLLVAADTFR 141 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 +AA++QLKI + D + + + A+++ D +I+DT GRL S+L Sbjct: 142 AAAVEQLKILGSQIGVPVFSIAGEKDPIKIVKASMEFAESEFFDSVIVDTRGRLEVESLL 201 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 + I K+ +LK P + V+D+ GQ A+ + F+ G TG I +K D R Sbjct: 202 VEEIKKIKDILK------PTETILVVDSMMGQVAVNIAKEFNENVGLTGAIFSKFDSDTR 255 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 GG ++ +P+ F+GVGE + DL+ F + ++ I G D Sbjct: 256 GGAVLSFKSICAVPIKFIGVGERVEDLDSFYPERIASRILGMGD 299 >gi|13542673|gb|AAH05543.1| Srp54c protein [Mus musculus] Length = 500 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E ++ + + +++I+DT+GR L +M++V + P Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVSNAIQPD- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I++ EPF + F + + G D Sbjct: 274 GTGEHIDNFEPFKTQPFISKLLGMGD 299 >gi|172048109|sp|A5UMY7|SRP54_METS3 RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 Length = 445 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 84/289 (29%), Positives = 146/289 (50%), Gaps = 22/289 (7%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVSVQR----VLY 86 +I + +++ V+E ++ LI+SD+ +A+ ++KI + L + K ++ + ++Y Sbjct: 21 VIDKKTIEEVVKE-IQRALIQSDVNIALVLDLSKKIKKRALEEEPPKGITPREHVITIIY 79 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + E+++ L+ P D +P+ IL +G+ G GKTT IGKL + + G + Sbjct: 80 E--EMVN--LLGGEAP-GLDIDVKPYKILFLGLQGSGKTTTIGKLCRYLQKKGFNPAVVC 134 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 DT+R AA +QL+ + DA LA + K+ + +KV +I DTAGR Sbjct: 135 TDTWRPAAYEQLRQLTEEMQVPLYGDPDNKDALDLAQKGLKEFKNRKV--IIFDTAGRHK 192 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 L+A + + +++ P + V+D T GQ A Q + F +I+TK+ Sbjct: 193 QEEDLIAEMDTLDDIIQ------PTESILVIDGTIGQQAGEQAKAFSQATDVGSIIITKL 246 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG+A+GGG + V P+ F+G GE I+D E F F + + G D Sbjct: 247 DGSAKGGGAMSAVAETGAPIKFIGTGERIDDFELFDPARFISRLLGMGD 295 >gi|293400506|ref|ZP_06644651.1| signal recognition particle protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305532|gb|EFE46776.1| signal recognition particle protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 467 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 149/302 (49%), Gaps = 22/302 (7%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A ESLS +L K F + + K K +S + ++D +RE + L+ +D+ V + Sbjct: 1 MAFESLS--ERLGKAFKNITGKGK------LSEKNMNDMLRE-VRMSLLEADVNYGVVKD 51 Query: 66 IVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + + K +V Q V+ V + I +L P N+ + V++V G+ Sbjct: 52 FIARVKDKALGTEVMTSLNPGQMVVKIVHDEIVALLGNEEAPINYKKTGITTVMMV-GLQ 110 Query: 121 GVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 G GKTT K++ M K +L A D R AAI+QLK + + + + A Sbjct: 111 GTGKTTAAAKIANVMKKKQSRKPLLVACDVIRPAAIEQLKTLGESIDVEVFSLGVETKAL 170 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A +A A+ + D ++ DTAGRLH + LM + + + P +L +DA Sbjct: 171 ETAQKAMDYAKEQGYDTVVFDTAGRLHIDEELMQELSDIKAFVH------PDDILLTVDA 224 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQ+ + FH TGL++TK+DG +RGGG++ + ++PV F+G+GE I DL+ Sbjct: 225 MTGQDIVNVASSFHEQLSVTGLVLTKLDGDSRGGGILSVRSITQVPVKFVGLGEKIEDLD 284 Query: 300 PF 301 F Sbjct: 285 VF 286 >gi|172038385|ref|YP_001804886.1| signal recognition particle protein [Cyanothece sp. ATCC 51142] gi|171699839|gb|ACB52820.1| signal recognition particle protein [Cyanothece sp. ATCC 51142] Length = 489 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 87/281 (30%), Positives = 142/281 (50%), Gaps = 29/281 (10%) Query: 34 DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85 D I+ + D ++E + L+ +D+ + V + + ++ +V + +++ Sbjct: 20 DKITEANMQDALKE-VRRALLEADVNLQVVKTFIADVEKAAIGAEVIAGVNPGQQLIKIV 78 Query: 86 YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 YD EL+ M +PL++ N P VIL+ G+ G GKTT KL+ + Sbjct: 79 YD--ELVKVMGESNVPLAQAENA-----PTVILMAGLQGTGKTTATAKLALYLRKQQRTA 131 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIID 200 ++ A D +R AAIDQL ++ + E+G+ A +A + ++A+ +D +IID Sbjct: 132 LMVATDIYRPAAIDQLVTLGEQI--EVPVFELGNQANPVDIATQGVEKAKEMGIDTVIID 189 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL + +M ++ RV K ++P L V+DA TGQ A FH G TG Sbjct: 190 TAGRLQIDEEMML---ELARVKKAVNPD---DTLLVVDAMTGQEAANLTRTFHDQIGVTG 243 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 I+TKMDG RGG + + P+ F+GVGE + L+PF Sbjct: 244 AILTKMDGDTRGGAALSVRQISGQPIKFVGVGEKVEALQPF 284 >gi|203284591|ref|YP_002222331.1| signal recognition particle protein [Borrelia duttonii Ly] gi|201084034|gb|ACH93625.1| signal recognition particle protein [Borrelia duttonii Ly] Length = 449 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 70/207 (33%), Positives = 109/207 (52%), Gaps = 6/207 (2%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 ++ IL++G+ G GKTT KL+ ++ KV+L A DTFR+AAI+QLK+ + + Sbjct: 99 NKLSCILMLGLQGSGKTTTCAKLAMRLKSENRKVLLVAADTFRAAAIEQLKVLGSQINIS 158 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 E + ++ + A+A+ D +IIDT GRL +L+ I + ++ Sbjct: 159 VFALENEDSPIKVVKKSIEYARAELFDTVIIDTRGRLEVEDLLLREIIDIKNIV------ 212 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P + V DA TGQ A+ + F+ G TG+I TK D ARGG ++ + +P+ F Sbjct: 213 VPTETILVADAMTGQVAVNIAKKFNESVGITGVIFTKFDSDARGGAILSLKTICGVPIKF 272 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +GVGE DL+ F S+ I G D Sbjct: 273 VGVGEKPEDLDVFYPDRVSSRILGMGD 299 >gi|295691479|ref|YP_003595172.1| signal recognition particle protein [Caulobacter segnis ATCC 21756] gi|295433382|gb|ADG12554.1| signal recognition particle protein [Caulobacter segnis ATCC 21756] Length = 508 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 86/289 (29%), Positives = 146/289 (50%), Gaps = 17/289 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94 ++S + +D+ +RE + L+ +D+ + V + + + K A +V R + +++ Sbjct: 21 VLSEKDIDEALRE-VRVALLEADVALPVVKDFISK--AKELAGGEAVIRSVKPADQVVKI 77 Query: 95 MLMPLSKPFNWDFS-------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAA 146 + L D + P +IL+ G+ G GKTT GKL+ ++S K V++A+ Sbjct: 78 VYDGLVDMLGGDVPTGLNLALNPPSIILMAGLQGSGKTTTTGKLALRLSKTDRKKVLVAS 137 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 DT R AA++QL + A + + + G A +A A A+ DVLI+DTAGR Sbjct: 138 LDTRRPAAMEQLALLATQVGVESLPIVAGQSAVDIAKRAVSAAKLGGYDVLILDTAGRTT 197 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + +M+ ++ R+ P + V D+ TGQ+A+R + FH TGLI+T+ Sbjct: 198 LDEAMMSEAAEVARIAN------PSETILVADSLTGQDAVRTAKAFHERLPLTGLILTRA 251 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG RGG + + +P+ FLG GE I+ L+ F A+ + I G D Sbjct: 252 DGDGRGGAALSMRHVTGLPIKFLGAGEKIDQLDVFDARRVAGRILGQGD 300 >gi|251782371|ref|YP_002996673.1| signal recognition particle subunit [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391000|dbj|BAH81459.1| signal recognition particle subunit [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 522 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 90/312 (28%), Positives = 159/312 (50%), Gaps = 23/312 (7%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT 72 +T F S + +L++ I ++L + V +E+ L+ +D+ + V + ++ + Sbjct: 1 MTMAFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRE 60 Query: 73 KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126 + ++ Q++L V+E + +L S+ D S + P +I++VG+ G GKTT Sbjct: 61 RAIGHEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTT 118 Query: 127 VIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD--AAALAY 183 GKL+ K+ + + ++ A D +R AAIDQLK + + ++G+D A + Sbjct: 119 FAGKLANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHLAVDIVR 176 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 + +QA+ + D ++IDTAGRL + LM + +R +K L P+ +L V+D+ GQ Sbjct: 177 KGLEQARENRNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQ 230 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 A F+ TG+++TK+DG RGG + + P+ F G GE I D+E F Sbjct: 231 EAANVAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGEKITDIETFHP 290 Query: 304 KDFSAVITGCLD 315 S+ I G D Sbjct: 291 DRMSSRILGMGD 302 >gi|217032545|ref|ZP_03438035.1| hypothetical protein HPB128_172g8 [Helicobacter pylori B128] gi|216945750|gb|EEC24374.1| hypothetical protein HPB128_172g8 [Helicobacter pylori B128] Length = 291 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 69/205 (33%), Positives = 111/205 (54%), Gaps = 7/205 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P V+L+ G+ G GKTT KL+ + KV+L A D R AA++QLK+ ++ + V Sbjct: 50 PTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQVGVE-V 108 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 E +A A K+A+ + DVLI+D+AGRL + LM + ++ +L P Sbjct: 109 FYEENKSVKEIANNALKRAKEAQFDVLIVDSAGRLAIDKELMQELKEVKEILN------P 162 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 H VL V DA +GQ+ ++ F+ G +G++++K D ++GG + I +P+ F+G Sbjct: 163 HEVLYVADALSGQDGVKSANTFNEEIGVSGVVLSKFDSDSKGGIALGITYQLGLPLRFIG 222 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 GE I DL+ FV + + G D Sbjct: 223 SGEKIPDLDVFVPERIVGRLMGAGD 247 >gi|118591424|ref|ZP_01548822.1| signal recognition particle protein [Stappia aggregata IAM 12614] gi|118436096|gb|EAV42739.1| signal recognition particle protein [Stappia aggregata IAM 12614] Length = 513 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 91/306 (29%), Positives = 157/306 (51%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL--DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75 F S S +L GI D ++ R ++ V E L ++ LI +D+ + + + +++ + Sbjct: 2 FESLSDRL-SGIFDKLTGRGALSENDVNEALREIRRALIEADVALPIVRSFTDKVRNRAV 60 Query: 76 AKDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +V SV Q V+ V + + +ML + P + + + P I++VG+ G GKTT K Sbjct: 61 GAEVVKSVTPGQMVVKIVHDQLVEMLGEEAHPIDLN-APAPVAIMMVGLQGSGKTTTTAK 119 Query: 131 LSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 ++++M+ KV++A+ DT R AA +QLK+ ++ D + G +A A A Sbjct: 120 IARRMTQRDKRKVLMASLDTRRPAAQEQLKVLGEQNDIDTLPIVAGQGPVEIAKRAMSAA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DV+++DTAGR+H + LM + ++ + PH +L V D+ TGQ+A+ Sbjct: 180 KLGGYDVVMLDTAGRIHIDEPLMVEMAEVKAAAQ------PHEILLVADSLTGQDAVNLA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F G TG+ +T+MDG RGG + + PV +G GE + LE F + + Sbjct: 234 QSFDERVGITGIALTRMDGDGRGGAALSMQAVTGKPVKLIGTGEKSDALEDFHPRRIADR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|182684220|ref|YP_001835967.1| signal recognition particle protein [Streptococcus pneumoniae CGSP14] gi|182629554|gb|ACB90502.1| signal recognition particle protein [Streptococcus pneumoniae CGSP14] Length = 523 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLQKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QAQ D ++IDTAGRL + +LM +R +K L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|16078661|ref|NP_389480.1| signal recognition particle-like (SRP) GTPase [Bacillus subtilis subsp. subtilis str. 168] gi|221309473|ref|ZP_03591320.1| signal recognition particle-like (SRP) component [Bacillus subtilis subsp. subtilis str. 168] gi|221313798|ref|ZP_03595603.1| signal recognition particle-like (SRP) component [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318722|ref|ZP_03600016.1| signal recognition particle-like (SRP) component [Bacillus subtilis subsp. subtilis str. JH642] gi|221322993|ref|ZP_03604287.1| signal recognition particle-like (SRP) component [Bacillus subtilis subsp. subtilis str. SMY] gi|321315364|ref|YP_004207651.1| signal recognition particle protein [Bacillus subtilis BSn5] gi|586037|sp|P37105|SRP54_BACSU RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog gi|2309080|dbj|BAA21691.1| Ffh [Bacillus subtilis] gi|2633970|emb|CAB13471.1| signal recognition particle-like (SRP) GTPase [Bacillus subtilis subsp. subtilis str. 168] gi|320021638|gb|ADV96624.1| signal recognition particle protein [Bacillus subtilis BSn5] Length = 446 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K ML A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A ++A+ + D +I+DTAGRLH + LM + + + Sbjct: 159 PVFSLGDQVSPVEIAKQAIEKAKEEHYDYVILDTAGRLHIDHELMDELTNVKEIAN---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+D+ TGQ+A+ + F+ G TG+++TK+DG RGG + I P+ Sbjct: 215 --PEEIFLVVDSMTGQDAVNVAKSFNEQLGLTGVVLTKLDGDTRGGAALSIRAVTNTPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ LEPF + ++ I G D Sbjct: 273 FAGLGEKLDALEPFHPERMASRILGMGD 300 >gi|291484149|dbj|BAI85224.1| signal recognition particle-like (SRP) component [Bacillus subtilis subsp. natto BEST195] Length = 446 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K ML A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A ++A+ + D +I+DTAGRLH + LM + + + Sbjct: 159 PVFSLGDQVSPVEIAKQAIEKAKEEHYDYVILDTAGRLHIDHELMDELTNVKEIAN---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+D+ TGQ+A+ + F+ G TG+++TK+DG RGG + I P+ Sbjct: 215 --PEEIFLVVDSMTGQDAVNVAKSFNEQLGLTGVVLTKLDGDTRGGAALSIRAVTNTPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ LEPF + ++ I G D Sbjct: 273 FAGLGEKLDALEPFHPERMASRILGMGD 300 >gi|160938805|ref|ZP_02086156.1| hypothetical protein CLOBOL_03699 [Clostridium bolteae ATCC BAA-613] gi|158437768|gb|EDP15528.1| hypothetical protein CLOBOL_03699 [Clostridium bolteae ATCC BAA-613] Length = 458 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ ++ RL + V+ L+++ L+ +D+ V ++ + + + Sbjct: 3 FESLSDKLQNVFKNLRGKGRLSEADVKAALKEVKMALLEADVSFRVVKQFIGSVQERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + K++ + + S+ +I++ G+ G GKTT K+ Sbjct: 63 EDVFGSLTPGQTVIKIVTEELVKLMGSETTEISLKPSNEISIIMMAGLQGAGKTTTTAKI 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + KM G K +LAA D +R AAI+QL+I DR + +A A + A Sbjct: 123 AAKMKAKGRKPLLAACDIYRPAAIEQLQINGDRVGIPVFSMGNKNKPVDIAKAALEHASK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 ++V+I+DTAGRLH + +M +++ + LD ++L V+DA TGQ+A+ Sbjct: 183 NGLNVVILDTAGRLHIDETMM---DELVEIKDNLD--VCQTIL-VVDAMTGQDAVNVAGT 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G G+I+TK+DG RGG + I P+ ++G+GE ++DLE F ++ I Sbjct: 237 FNDKIGIDGVILTKLDGDTRGGAALSIRAVTGKPILYVGMGEKLSDLEQFYPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|72080399|ref|YP_287457.1| signal recognition particle protein [Mycoplasma hyopneumoniae 7448] gi|71913523|gb|AAZ53434.1| signal recognition particle protein [Mycoplasma hyopneumoniae 7448] Length = 440 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 98/322 (30%), Positives = 155/322 (48%), Gaps = 34/322 (10%) Query: 17 LTKGFASTSLKLKEGIT----DIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 LT S+ KL++ IT D++ +R + + E +LL+ D V +++++ L Sbjct: 5 LTNRIQSSLKKLQKSITINESDLVEITREIRLALLEADVNLLVVKDFISKVKTQVLKQGL 64 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPL----SKPFNWDFSHRPHVILVVGVNGVGKTTV 127 T + ++L H+ L+ + SK N F+ P +I++VG+ G GKTT Sbjct: 65 TSKLNPQQEFLKIL-------HQNLVEILGINSKSIN--FNKTPTIIMLVGLQGSGKTTT 115 Query: 128 IGKLS--KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 KL+ + K++L A DT+R AAIDQLK + + E +A EA Sbjct: 116 AAKLAVFARQKKLAKKILLVACDTYRPAAIDQLKQLGKQVLIEVFYVE--KSPVQIAKEA 173 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 ++ D++I DTAGRL N LM + ++ +K P +L +LDA +GQ+ Sbjct: 174 LIYSKNNDFDLVIFDTAGRLSINEELMNELSEIKENIK------PDQILFILDALSGQDI 227 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + ++F+ TG I+TK+D AR G + I KIPV +G GE I+ LE F Sbjct: 228 INVAQIFNQKINLTGAIITKLDSNARAGAALSITHLLKIPVLLVGTGEKISALELFHPNR 287 Query: 306 FSAVITG------CLDYGEEKI 321 + I G L+ EE I Sbjct: 288 MADRILGMGDVRSLLEQAEENI 309 >gi|319901661|ref|YP_004161389.1| signal recognition particle subunit FFH/SRP54 (srp54) [Bacteroides helcogenes P 36-108] gi|319416692|gb|ADV43803.1| signal recognition particle subunit FFH/SRP54 (srp54) [Bacteroides helcogenes P 36-108] Length = 440 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 77/265 (29%), Positives = 139/265 (52%), Gaps = 13/265 (4%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99 V E L+D+ L+ +D+ VA+ + + K ++V + + + +++H L L Sbjct: 26 NVAETLKDVRKALLDADVNYKVAKNFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQL 85 Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156 + + +P VIL+ G+ G GKTT GKL++ + + K +L A D +R AAI+ Sbjct: 86 MGGETAEINIDSKPSVILMSGLQGSGKTTFSGKLARMLKAKKNRKPLLVACDVYRPAAIE 145 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL++ A++ D +A A ++A+ K D++I+DTAGRL + +M I Sbjct: 146 QLRVLAEQIEVPMYSEPDSKDPVTIAQNAIQEAKEKGYDLVIVDTAGRLAVDEEMMNEIA 205 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + + + P+ +L V+D+ TGQ+A+ + F+ G+I+TK+DG RGG + Sbjct: 206 AIKKAID------PNEILFVVDSMTGQDAVNTAKEFNERLDFNGVILTKLDGDTRGGAAL 259 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301 I P+ F+G GE ++ ++ F Sbjct: 260 SIRSVVNKPIKFVGTGEKLDAIDQF 284 >gi|312601025|gb|ADQ90280.1| Signal recognition particle protein [Mycoplasma hyopneumoniae 168] Length = 440 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 100/325 (30%), Positives = 158/325 (48%), Gaps = 40/325 (12%) Query: 17 LTKGFASTSLKLKEGIT----DIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 LT S+ KL++ IT D++ +R + + E +LL+ D V +++++ L Sbjct: 5 LTNRIQSSLKKLQKSITINESDLVEITREIRLALLEADVNLLVVKDFISKVKTQVLKQGL 64 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPL----SKPFNWDFSHRPHVILVVGVNGVGKTTV 127 T + ++L H+ L+ + SK N F+ P +I++VG+ G GKTT Sbjct: 65 TSKLNPQQEFLKIL-------HQNLVEILGINSKSIN--FNKTPTIIMLVGLQGSGKTTT 115 Query: 128 IGKLS-----KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 KL+ KK++ K++L A DT+R AAIDQLK + + E +A Sbjct: 116 AAKLAVFARQKKLTK---KILLVACDTYRPAAIDQLKQLGKQVLIEVFYVE--KSPVQIA 170 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 EA ++ D++I DTAGRL N LM + ++ +K P +L +LDA +G Sbjct: 171 KEALIYSKNNDFDLVIFDTAGRLSINEELMNELSEIKENIK------PDQILFILDALSG 224 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 Q+ + ++F+ TG I+TK+D AR G + I KIPV +G GE I+ LE F Sbjct: 225 QDIINVAQIFNQKINLTGAIITKLDSNARAGAALSITHLLKIPVLLVGTGEKISALELFH 284 Query: 303 AKDFSAVITG------CLDYGEEKI 321 + I G L+ EE I Sbjct: 285 PNRMADRILGMGDVRSLLEQAEENI 309 >gi|313201905|ref|YP_004040563.1| signal recognition particle protein [Methylovorus sp. MP688] gi|312441221|gb|ADQ85327.1| signal recognition particle protein [Methylovorus sp. MP688] Length = 450 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 86/285 (30%), Positives = 143/285 (50%), Gaps = 13/285 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL--YDVSELIH 93 +S + D +RE + L+ +D+ + V ++ + ++ + +DV +Q + V +++H Sbjct: 22 LSEENISDAMRE-VRMALLEADVALPVVKEFIAQVKERAVGRDV-LQSLTPGQAVIQVVH 79 Query: 94 KMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + L L N + P +IL+ G+ G GKTT KL++ + + KV+LA+ D + Sbjct: 80 EELTRLMGEQNVGLNLAAVPPAIILMAGLQGSGKTTTSAKLARLLKEQKKKVLLASADVY 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAI+QLK A D S +A A+ DV+I DTAGRL + Sbjct: 140 RPAAIEQLKTMAKSLEVDCFDSNASQKPQDIAANVLDFAKRHFYDVVIFDTAGRLGIDEA 199 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 +MA I ++ +L P L V+DA GQ+A+ F TG+I+TK+DG A Sbjct: 200 MMAEIQQLHALLN------PVETLFVVDAMQGQDAVNTARAFGETLPLTGVILTKLDGDA 253 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + + P+ F+GV E ++ LE F + ++ + G D Sbjct: 254 RGGAALSVRHITGKPIKFVGVSEKVDGLEVFHPERMASRVLGMGD 298 >gi|296330813|ref|ZP_06873288.1| signal recognition particle protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674331|ref|YP_003866003.1| signal recognition particle protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296151818|gb|EFG92692.1| signal recognition particle protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412575|gb|ADM37694.1| signal recognition particle protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 446 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K ML A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A ++A+ + D +I+DTAGRLH + LM + + + Sbjct: 159 PVFSLGDQVSPVEIAKQAIEKAKEEHYDYVILDTAGRLHIDHELMDELTNVKEIAN---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+D+ TGQ+A+ + F+ G TG+++TK+DG RGG + I P+ Sbjct: 215 --PEEIFLVVDSMTGQDAVNVAKSFNEQLGLTGVVLTKLDGDTRGGAALSIRAVTNTPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ LEPF + ++ I G D Sbjct: 273 FAGLGEKLDALEPFHPERMASRILGMGD 300 >gi|213586204|ref|ZP_03368030.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 269 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 86/269 (31%), Positives = 144/269 (53%), Gaps = 19/269 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V+E L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +V+ Q + V SEL+ M ++ N + P V+L+ G+ G GKTT +GK Sbjct: 62 HEVNKSLTPGQEFVKIVRSELVAAM-GEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + KV++ + D +R AAI QL+ A++ DF S++G + A K+A Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K DVL++DTAGRLH + +M I ++ +K P L V+DA TGQ+A Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 + F+ TG+++TK+DG ARGG + I Sbjct: 234 KAFNEALPLTGVVLTKVDGDARGGAALSI 262 >gi|86151630|ref|ZP_01069844.1| signal recognition particle protein [Campylobacter jejuni subsp. jejuni 260.94] gi|86153420|ref|ZP_01071624.1| signal recognition particle protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613116|ref|YP_001000405.1| signal recognition particle protein [Campylobacter jejuni subsp. jejuni 81-176] gi|167005347|ref|ZP_02271105.1| signal recognition particle protein [Campylobacter jejuni subsp. jejuni 81-176] gi|85841259|gb|EAQ58507.1| signal recognition particle protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85843146|gb|EAQ60357.1| signal recognition particle protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249374|gb|EAQ72334.1| signal recognition particle protein [Campylobacter jejuni subsp. jejuni 81-176] Length = 445 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 73/205 (35%), Positives = 112/205 (54%), Gaps = 6/205 (2%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P V+L+ G+ G GKTT KL+ + KV++AA D R AA++QL+ + Sbjct: 92 SKPPTVVLMAGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEI 151 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + E D +A EA K+A++ VDVL++DTAGRL + LM ++V+K D Sbjct: 152 ELFFIENEKDPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALM----NELKVVK--DV 205 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V DA +GQ+ ++ F+ V G +G+I++K D +GG + I IP+ Sbjct: 206 LNPDEIFYVADAMSGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAKQIGIPLR 265 Query: 288 FLGVGEGINDLEPFVAKDFSAVITG 312 F+GVGE + DLE F+ + I G Sbjct: 266 FIGVGEKVADLEVFIPDRIVSRIMG 290 >gi|324507951|gb|ADY43362.1| Signal recognition particle receptor subunit alpha [Ascaris suum] Length = 657 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 93/299 (31%), Positives = 145/299 (48%), Gaps = 38/299 (12%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP- 102 V +++ D LI ++ A K+ + + K K V S RV V E I + L+ L P Sbjct: 367 VLDKMRDTLIAKNVAAEPADKLCQSVAAKLEGKVVGSFSRVAGIVKESIREALVQLLTPK 426 Query: 103 ---------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 HRP+VI+ GVNGVGK+T + K++ +++ G +V++AAGDTFR+ Sbjct: 427 RRVDILRDVLEAKREHRPYVIVFCGVNGVGKSTNLAKITFWLNENGHRVLIAAGDTFRAG 486 Query: 154 AIDQLKIWADR------TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 A++QL+ S G D A LA A A + +DV+++DTAGR+ + Sbjct: 487 AVEQLRTHTKHLNSLHPNSVQLYEQGYGKDPAGLAAAAIAIASERNIDVVLVDTAGRMQD 546 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF------HAVAGT--- 258 N LM + K+IR+ + P VL V +A G +A+ Q+ F HA G Sbjct: 547 NEPLMRSLAKLIRI------NEPDLVLFVGEALVGNDAVDQLVKFNQALADHAALGADAR 600 Query: 259 --TGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 G+++TK D + G I + P+ F+G G+ DL+ + SAV+ L Sbjct: 601 LIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYKDLKNL---NISAVVHSLL 656 >gi|283956118|ref|ZP_06373605.1| signal recognition particle protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792438|gb|EFC31220.1| signal recognition particle protein [Campylobacter jejuni subsp. jejuni 1336] Length = 445 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 87/272 (31%), Positives = 140/272 (51%), Gaps = 17/272 (6%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSK 101 E L+ L+++D V K+ +ELLT +DV ++ L + + +L K Sbjct: 30 ETLKKALLKAD----VHHKVTKELLTS-IEEDVKQNGIGQKQFLNAIKVNLENILSVNGK 84 Query: 102 PFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 + F+ +P V+L+ G+ G GKTT KL+ + KV++AA D R AA++QL+ Sbjct: 85 NQGFVFASKPPTVVLMAGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQ 144 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 + + E D +A EA K+A++ VDVL++DTAGRL + LM + + Sbjct: 145 LCEANEIELFFIENEKDPIRVAKEALKKAESSMVDVLLVDTAGRLAIDETLMNELKAVKD 204 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 VL P + V DA +GQ+ ++ F+ V G +G+I++K D +GG + I Sbjct: 205 VLN------PDEIFYVADAMSGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAK 258 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 IP+ F+GVGE + DLE F+ + I G Sbjct: 259 QIGIPLRFIGVGEKVADLEVFIPDRIVSRIMG 290 >gi|148272543|ref|YP_001222104.1| signal recognition particle protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830473|emb|CAN01408.1| signal recognition particle protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 523 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 91/310 (29%), Positives = 150/310 (48%), Gaps = 22/310 (7%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L E ++ +L DG E+ L+ +D+ + V + + + Sbjct: 4 FGTLSDRLAETFKNLRGKGKLSAADVDGTVREIRRALLEADVALDVVKAFTASVRERALG 63 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L + + P VI++ G+ G GKTT+ GKL Sbjct: 64 GEVSQALNPAQQVVQIVNEELVGILGGQQRRIQF-AKKPPTVIMLAGLQGAGKTTLAGKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188 K ++ G ML A D R A+ QL++ ++ E G+ + + +A K Sbjct: 123 GKWLAKDGHTPMLVAADLQRPNAVQQLQVVGEQAGVPVFAPEPGNGKGNPVRVTKDAMKH 182 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A K+ V+IIDTAGRL ++ LM + + K DP VL V+DA GQ+A+ Sbjct: 183 AIDKQYSVVIIDTAGRLGVDAELMK---QAADIRKATDPD---EVLFVIDAMIGQDAVAT 236 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG++++K+DG ARGG + + P+ F GEG++D EPF ++ Sbjct: 237 AKAFQDGVDFTGVVLSKLDGDARGGAALSVASVTGRPIMFASTGEGLDDFEPFHPDRMAS 296 Query: 309 VITGCLDYGE 318 I LD G+ Sbjct: 297 RI---LDLGD 303 >gi|114571433|ref|YP_758113.1| signal recognition particle subunit FFH/SRP54 (srp54) [Maricaulis maris MCS10] gi|114341895|gb|ABI67175.1| signal recognition particle subunit FFH/SRP54 (srp54) [Maricaulis maris MCS10] Length = 521 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 88/288 (30%), Positives = 144/288 (50%), Gaps = 14/288 (4%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVS 89 ++S + +D +RE + L+ +D+ + V + +++ + +DV Q+V+ V Sbjct: 21 VLSEKDVDAALRE-IRVALLEADVALDVVKAATKQIRERAVGEDVIRAVSPGQQVIKIVH 79 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAG 147 + + +L +P P + IL+ G+ G GKTT KL+K++ + KV+LA+ Sbjct: 80 DALVDLLGGEGEPVGLSLEGEPPIAILMAGLQGSGKTTTSAKLAKRIQETQKKKVLLASL 139 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DT R AA++QL+ A + F+ A +A A + + DV+I+DTAGR Sbjct: 140 DTRRPAAMEQLQQLAGQIDVAFLPIVPNQRAVDIAKRAMNAGRLQGFDVVILDTAGRTSI 199 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + +MA + RV P L V DA TGQ+A+ FH TGL++T+MD Sbjct: 200 DEEMMAEAHDIARVTN------PRETLLVADALTGQDAVETARRFHDRLPLTGLVLTRMD 253 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G RGG + + +P+ FLGV E + L+ F AK + I G D Sbjct: 254 GDGRGGAALSMRHVTGLPIKFLGVSEKPDGLDAFDAKRVAGRILGRGD 301 >gi|323700095|ref|ZP_08112007.1| signal recognition particle protein [Desulfovibrio sp. ND132] gi|323460027|gb|EGB15892.1| signal recognition particle protein [Desulfovibrio desulfuricans ND132] Length = 509 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 86/286 (30%), Positives = 143/286 (50%), Gaps = 15/286 (5%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 + + +G+RE + L+ +D+ V ++ V+++ + +V Q + V+E Sbjct: 22 LDENNIKEGLRE-VRLALLEADVNFKVVKRFVDQVKERALGDEVLKGLEPGQHFIKIVNE 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDT 149 + ++L + + D RP +++VG+ G GKTT GK++ + G K L D Sbjct: 81 ELIELLG--GEQQDLDLKARPLKLMMVGLQGSGKTTSSGKIALFLRKQHGKKPYLVPADV 138 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAIDQL A + S + + +A +A+ D+++ DTAGRLH + Sbjct: 139 YRPAAIDQLNTLARQLDVPVYPSTTDMNPVDICKDALVKAEELGCDLILFDTAGRLHIDE 198 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 LM + + R + P +L V DA TGQ+A+ E F+ G TG+++TKMDG Sbjct: 199 KLMDELANIKRECQ------PQEILFVADAMTGQDAVTVAESFNDKLGITGVVLTKMDGD 252 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ARGG + I V F+GVGE +++LE F ++ I G D Sbjct: 253 ARGGAALSIKTVTGRSVKFVGVGEKLSELELFHPDRIASRILGMGD 298 >gi|149007045|ref|ZP_01830714.1| signal recognition particle protein [Streptococcus pneumoniae SP18-BS74] gi|168484497|ref|ZP_02709449.1| signal recognition particle protein [Streptococcus pneumoniae CDC1873-00] gi|307127122|ref|YP_003879153.1| signal recognition particle protein [Streptococcus pneumoniae 670-6B] gi|147761349|gb|EDK68315.1| signal recognition particle protein [Streptococcus pneumoniae SP18-BS74] gi|172042260|gb|EDT50306.1| signal recognition particle protein [Streptococcus pneumoniae CDC1873-00] gi|306484184|gb|ADM91053.1| signal recognition particle protein [Streptococcus pneumoniae 670-6B] gi|332074621|gb|EGI85095.1| signal recognition particle protein [Streptococcus pneumoniae GA17545] gi|332201751|gb|EGJ15821.1| signal recognition particle protein [Streptococcus pneumoniae GA47368] Length = 523 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QAQ D ++IDTAGRL + +LM +R +K L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKTL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|15836678|ref|NP_297366.1| signal recognition particle protein [Xylella fastidiosa 9a5c] gi|9104846|gb|AAF82886.1|AE003861_3 signal recognition particle protein [Xylella fastidiosa 9a5c] Length = 434 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 81/269 (30%), Positives = 143/269 (53%), Gaps = 16/269 (5%) Query: 42 DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93 ++ +RE E+ L+ +D+ ++V Q ++E + + ++V Q ++ V + + Sbjct: 3 EENIREATREVRIALLEADVALSVVQALIERIKIRALGQEVFKSLTPGQALIKVVRDELA 62 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRS 152 ++ + N + P VIL+ G+ G GKT+++GKL+K + + K VM+ + D +R Sbjct: 63 AVMGDSASELNLNVPA-PAVILLAGLQGAGKTSMVGKLAKYLKEKRKKKVMVVSADVYRP 121 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL+I +++ + S + + + + A A+ VDVL++DTAGRL + Sbjct: 122 AAIEQLRILSEQVNVLCFPSSVEQNPVDIVHAAIADAKKSFVDVLLVDTAGRLAIDQ--- 178 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 G M + D P L V+D+ TGQ+A + F TG+I+TK DG ARG Sbjct: 179 ---GMMDEIKALHDTLVPVETLFVVDSMTGQDAANTAKAFSEALPLTGVILTKTDGDARG 235 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GG + + P+ F+G GE ++DL+ F Sbjct: 236 GGALSVRYITGCPIKFVGTGEKVDDLDVF 264 >gi|331703417|ref|YP_004400104.1| signal recognition particle M54 protein [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801972|emb|CBW54126.1| Signal recognition particle M54 protein [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 447 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 84/283 (29%), Positives = 148/283 (52%), Gaps = 18/283 (6%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 ++ ++E L+++ L+ +D+ + A++I+ + K +S Q+++ V E + Sbjct: 26 EENIKETLKEIRLSLLEADVNIEAAKEIINNVKQKALGGYISEGASAHQQMIKIVHEELV 85 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRS 152 +L + P D + +P V+++VG+ G GKTT KL+ ++ K +L G D +R Sbjct: 86 NILGKENAPL--DINKKPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKKVLLVGLDIYRP 143 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AI+QL +T+ V + D A +A + A+ DV+I+DTAGRL + +LM Sbjct: 144 GAIEQLVQLGQKTNTQ-VFEKGKQDPVKTAEQALEYAKENNFDVVILDTAGRLQVDQVLM 202 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 K + LK+ +P+ +L V+D +GQ + F+ +G+++TK+DG ARG Sbjct: 203 ----KELDNLKK--KTSPNEILLVVDGMSGQEIINVTNEFNDKLKLSGVVVTKLDGDARG 256 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + I K+P+ F+G GEG N L F K + + G D Sbjct: 257 GATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGMGD 299 >gi|270292853|ref|ZP_06199064.1| signal recognition particle protein [Streptococcus sp. M143] gi|270278832|gb|EFA24678.1| signal recognition particle protein [Streptococcus sp. M143] Length = 523 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QAQ D ++IDTAGRL + +LM +R +K L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKTL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|401118|sp|Q01442|SRP54_MYCMY RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog gi|150210|gb|AAA25441.1| SRPM54 [Mycoplasma mycoides] Length = 447 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 84/283 (29%), Positives = 148/283 (52%), Gaps = 18/283 (6%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93 ++ ++E L+++ L+ +D+ + A++I+ + K +S Q+++ V E + Sbjct: 26 EENIKETLKEIRLSLLEADVNIEAAKEIINNVKQKALGGYISEGASAHQQMIKIVHEELV 85 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRS 152 +L + P D + +P V+++VG+ G GKTT KL+ ++ K +L G D +R Sbjct: 86 NILGKENAPL--DINKKPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKKVLLVGLDIYRP 143 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AI+QL +T+ V + D A +A + A+ DV+I+DTAGRL + +LM Sbjct: 144 GAIEQLVQLGQKTNTQ-VFEKGKQDPVKTAEQALEYAKENNFDVVILDTAGRLQVDQVLM 202 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 K + LK+ +P+ +L V+D +GQ + F+ +G+++TK+DG ARG Sbjct: 203 ----KELDNLKK--KTSPNEILLVVDGMSGQEIINVTNEFNDKLKLSGVVVTKLDGDARG 256 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + I K+P+ F+G GEG N L F K + + G D Sbjct: 257 GATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGMGD 299 >gi|313139569|ref|ZP_07801762.1| signal recognition particle protein [Bifidobacterium bifidum NCIMB 41171] gi|313132079|gb|EFR49696.1| signal recognition particle protein [Bifidobacterium bifidum NCIMB 41171] Length = 569 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 89/330 (26%), Positives = 154/330 (46%), Gaps = 40/330 (12%) Query: 5 KVASESLSWIR-------KLTKGFASTSLKLKEGITDIISSRRLD----DGVREELEDLL 53 + AS + W ++ F+S + +L + S +L DG E+ L Sbjct: 2 RAASAAARWFSAATARLVRIMAAFSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRAL 61 Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDF 107 + +D+ + V + + + +VS Q+V+ V+E + +L + +P N+ Sbjct: 62 LDADVALDVVRSFTARIRERALGTEVSEALNPAQQVVKIVNEELTDVLGQGVDRPLNF-A 120 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 + P +I++ G+ G GKTT+ GKL + D+G +L A D R A+ QL++ +R Sbjct: 121 KNPPTIIMLAGLQGAGKTTLAGKLGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGV 180 Query: 168 DFVCSEIG----------------SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 E G D +A ++ A+ K D +IIDTAGRL + +L Sbjct: 181 PVYAPEKGVQSDGGDSVSAPGETSGDPVKVARDSIALAKQKLYDTVIIDTAGRLGVDEVL 240 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M + R ++ D P+ +L V+DA GQ+A++ + F TG++++K+DG AR Sbjct: 241 M----QQARDIR--DAVNPNEILFVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDAR 294 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GG + + P+ F GEG+ D E F Sbjct: 295 GGAALSVASVTGKPILFASTGEGLKDFEVF 324 >gi|332200732|gb|EGJ14804.1| signal recognition particle protein [Streptococcus pneumoniae GA41317] Length = 523 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QAQ D ++IDTAGRL + +LM +R +K L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|225856949|ref|YP_002738460.1| signal recognition particle protein [Streptococcus pneumoniae P1031] gi|225725114|gb|ACO20966.1| signal recognition particle protein [Streptococcus pneumoniae P1031] Length = 523 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QAQ D ++IDTAGRL + +LM +R +K L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|53714504|ref|YP_100496.1| putative signal recognition protein [Bacteroides fragilis YCH46] gi|60682525|ref|YP_212669.1| signal recognition particle protein [Bacteroides fragilis NCTC 9343] gi|253565005|ref|ZP_04842461.1| signal recognition particle protein [Bacteroides sp. 3_2_5] gi|265766036|ref|ZP_06094077.1| signal recognition particle protein [Bacteroides sp. 2_1_16] gi|52217369|dbj|BAD49962.1| putative signal recognition protein [Bacteroides fragilis YCH46] gi|60493959|emb|CAH08751.1| signal recognition particle protein [Bacteroides fragilis NCTC 9343] gi|251946470|gb|EES86847.1| signal recognition particle protein [Bacteroides sp. 3_2_5] gi|263253704|gb|EEZ25169.1| signal recognition particle protein [Bacteroides sp. 2_1_16] gi|301164001|emb|CBW23557.1| signal recognition particle protein [Bacteroides fragilis 638R] Length = 439 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 82/266 (30%), Positives = 146/266 (54%), Gaps = 15/266 (5%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99 V E L+D+ L+ +D+ VA+ + + K ++V + + + +++H L L Sbjct: 26 NVAETLKDVRKALLDADVNYKVAKGFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQL 85 Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156 + D +P VIL+ G+ G GKTT GKL++ + + + +L A D +R AAI+ Sbjct: 86 MGGETVEIDTKGQPAVILMSGLQGSGKTTFSGKLARMLKTKKNKRPLLVACDVYRPAAIE 145 Query: 157 QLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 QL++ A++ + SEI S D ++A A K+A+AK D++I+DTAGRL + +M I Sbjct: 146 QLRVLAEQIDVP-MYSEIDSKDPVSIAQNAIKEARAKGYDLVIVDTAGRLAVDEQMMNEI 204 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 + ++ P+ +L V+D+ TGQ+A+ + F+ G+++TK+DG RGG Sbjct: 205 AAIKEAIQ------PNEILFVVDSMTGQDAVNTAKEFNERLDFDGVVLTKLDGDTRGGAA 258 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPF 301 + I P+ F+G GE ++ ++ F Sbjct: 259 LSIRSVVNKPIKFVGTGEKLDAIDQF 284 >gi|239908107|ref|YP_002954848.1| signal recognition particle protein [Desulfovibrio magneticus RS-1] gi|239797973|dbj|BAH76962.1| signal recognition particle protein [Desulfovibrio magneticus RS-1] Length = 505 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 149/303 (49%), Gaps = 14/303 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L++ I RL ++ V+ L ++ L+ +D+ V + VE + + Sbjct: 2 FDSLTDRLEDVFRKIRGQARLTEENVQTALREVRLALLEADVNFKVVKDFVERVRERAVG 61 Query: 77 KDV-SVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 +DV V +++H+ L+ + + + D S P VI+VVG+ G GKTT KL+ Sbjct: 62 QDVLKSLNPGQQVVKIVHEELIEILGGQATDLDLSGSPAVIMVVGLQGSGKTTTCAKLAL 121 Query: 134 KMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 K+ + K L D +R AAIDQL A + + S + + A +A+ Sbjct: 122 KLRREFKRKPYLVPADVYRPAAIDQLHKLASQLDIEAYPSTPDQNPVDICAAALAEAKRT 181 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 DV+++DTAGRLH + LM + + AP +L V DA TGQ+A+ F Sbjct: 182 GHDVVLLDTAGRLHIDEALMDELAAIKAGC------APGEILFVADAMTGQDAVTVAAAF 235 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + TG+++TKMDG ARGG + + P+ +G GE ++DLE F ++ I G Sbjct: 236 NERLDITGVVLTKMDGDARGGAALSVRQVTGKPIKLVGTGEKVSDLELFYPDRAASRILG 295 Query: 313 CLD 315 D Sbjct: 296 MGD 298 >gi|225860882|ref|YP_002742391.1| signal recognition particle protein [Streptococcus pneumoniae Taiwan19F-14] gi|298230784|ref|ZP_06964465.1| signal recognition particle protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254274|ref|ZP_06977860.1| signal recognition particle protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502715|ref|YP_003724655.1| signal recognition particle protein [Streptococcus pneumoniae TCH8431/19A] gi|225728379|gb|ACO24230.1| signal recognition particle protein [Streptococcus pneumoniae Taiwan19F-14] gi|298238310|gb|ADI69441.1| signal recognition particle protein [Streptococcus pneumoniae TCH8431/19A] Length = 523 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QAQ D ++IDTAGRL + +LM +R +K L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|167623030|ref|YP_001673324.1| signal recognition particle protein [Shewanella halifaxensis HAW-EB4] gi|167353052|gb|ABZ75665.1| signal recognition particle protein [Shewanella halifaxensis HAW-EB4] Length = 457 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 91/305 (29%), Positives = 155/305 (50%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL ++ V+E L ++ L+ +D+ + V ++ V + + Sbjct: 2 FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNSVKERAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++VS Q + V + + ++ + + P VI++ G+ G GKTT + KL Sbjct: 62 QEVSKSLSPGQAFIKIVQSELENAMGEANEALDLS-AQPPAVIMMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + K V++ + D +R AAI QL+ A F S++ +A A A+ Sbjct: 121 AKFLREREKKSVLVVSADVYRPAAIKQLETLAAEVEVQFFPSDVSQKPVDIAKAAIAHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K +DV+I+DTAGRLH + +M I ++ V+ P L V+DA TGQ+A + Sbjct: 181 LKFIDVVIVDTAGRLHVDEAMMDEIKELHAVIN------PVETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+++TK+DG ARGG + I P+ FLGVGE + LE F ++ I Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEAFHPDRVASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|15598941|ref|NP_252435.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa PAO1] gi|107103261|ref|ZP_01367179.1| hypothetical protein PaerPA_01004330 [Pseudomonas aeruginosa PACS2] gi|116051744|ref|YP_789417.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa UCBPP-PA14] gi|218889976|ref|YP_002438840.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa LESB58] gi|254236655|ref|ZP_04929978.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa C3719] gi|254242437|ref|ZP_04935759.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa 2192] gi|296387745|ref|ZP_06877220.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa PAb1] gi|313109153|ref|ZP_07795124.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa 39016] gi|9949914|gb|AAG07133.1|AE004793_10 signal recognition particle protein Ffh [Pseudomonas aeruginosa PAO1] gi|115586965|gb|ABJ12980.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa UCBPP-PA14] gi|126168586|gb|EAZ54097.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa C3719] gi|126195815|gb|EAZ59878.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa 2192] gi|218770199|emb|CAW25961.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa LESB58] gi|310881626|gb|EFQ40220.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa 39016] Length = 457 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L +D +++ L ++ L+ +D+ + V + V ++ + Sbjct: 2 FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNKVKERAVG 61 Query: 77 KDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGKLS 132 +VS +++ L L N D + P VIL+ G+ G GKTT GKL+ Sbjct: 62 TEVSKSLTPGQAFVKIVRAELEELMGAANEDLALSVAPPAVILMAGLQGAGKTTTAGKLA 121 Query: 133 KKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + + K VM+ + D +R AAI QL+ A F S++ A+A A ++A+ Sbjct: 122 RFLKERKKKSVMVVSADVYRPAAIKQLETLAGEVGVTFFPSDVSQKPVAIAEAAIREARL 181 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K +DV+I+DTAGRLH ++ +M I ++ +K P L V+DA TGQ+A + Sbjct: 182 KFIDVVIVDTAGRLHIDADMMDEIKQVHAAIK------PAETLFVVDAMTGQDAANTAKA 235 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ TG+++TK+DG ARGG + + P+ FLG+GE L+PF ++ I Sbjct: 236 FNDALPLTGVVLTKVDGDARGGAALSVRAITGKPIKFLGMGEKSEALDPFHPDRVASRIL 295 Query: 312 GCLD 315 G D Sbjct: 296 GMGD 299 >gi|149012344|ref|ZP_01833413.1| glucose-inhibited division protein B [Streptococcus pneumoniae SP19-BS75] gi|169832782|ref|YP_001694736.1| signal recognition particle protein [Streptococcus pneumoniae Hungary19A-6] gi|225854751|ref|YP_002736263.1| signal recognition particle protein [Streptococcus pneumoniae JJA] gi|303261607|ref|ZP_07347554.1| signal recognition particle protein [Streptococcus pneumoniae SP14-BS292] gi|303267279|ref|ZP_07353142.1| signal recognition particle protein [Streptococcus pneumoniae BS457] gi|303268434|ref|ZP_07354229.1| signal recognition particle protein [Streptococcus pneumoniae BS458] gi|147763670|gb|EDK70605.1| glucose-inhibited division protein B [Streptococcus pneumoniae SP19-BS75] gi|168995284|gb|ACA35896.1| signal recognition particle protein [Streptococcus pneumoniae Hungary19A-6] gi|225723340|gb|ACO19193.1| signal recognition particle protein [Streptococcus pneumoniae JJA] gi|301802076|emb|CBW34809.1| signal recognition particle protein [Streptococcus pneumoniae INV200] gi|302637187|gb|EFL67675.1| signal recognition particle protein [Streptococcus pneumoniae SP14-BS292] gi|302642040|gb|EFL72392.1| signal recognition particle protein [Streptococcus pneumoniae BS458] gi|302643206|gb|EFL73490.1| signal recognition particle protein [Streptococcus pneumoniae BS457] Length = 523 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QAQ D ++IDTAGRL + +LM +R +K L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|327389521|gb|EGE87866.1| signal recognition particle protein [Streptococcus pneumoniae GA04375] Length = 523 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QAQ D ++IDTAGRL + +LM +R +K L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|226227753|ref|YP_002761859.1| signal recognition particle protein [Gemmatimonas aurantiaca T-27] gi|226090944|dbj|BAH39389.1| signal recognition particle protein [Gemmatimonas aurantiaca T-27] Length = 452 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 84/281 (29%), Positives = 144/281 (51%), Gaps = 31/281 (11%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-----RYAKDVSVQRVLYDVS 89 +++ + DG+RE + +L+ +D+ A+ ++ +E + + + + Q+++ V Sbjct: 21 VLTESDIKDGMRE-VRRVLLEADVNFALTREFLERVEKQAIGVLQLKQVQPAQQLVKIVH 79 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 + + ML + S P V+++VG+ G GKTT GKL++K+ L A D Sbjct: 80 DELTAMLGERREGLKMS-SVPPTVVMMVGLQGSGKTTTAGKLARKLKLEAKTTRLVAADV 138 Query: 150 FRSAAIDQLK---------IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 +R AAIDQL+ ++ADRT+ D V +A Q + V+I+D Sbjct: 139 YRPAAIDQLETLGKALDVPVYADRTTQDVV---------KIAKAGIDQGVRNRDRVVIVD 189 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL ++ +M + ++ +K P +L V D TGQ A++ + F+ TG Sbjct: 190 TAGRLQIDADMMDELKRLKAAIK------PDEILFVADGMTGQEAVKIAQGFNEALDITG 243 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +I+TK+DG ARGG + I K P+ ++GVGE + LE F Sbjct: 244 VILTKLDGDARGGAALSIYGVLKKPIKYIGVGEKPDALEEF 284 >gi|148655435|ref|YP_001275640.1| signal recognition particle protein [Roseiflexus sp. RS-1] gi|148567545|gb|ABQ89690.1| signal recognition particle subunit FFH/SRP54 (srp54) [Roseiflexus sp. RS-1] Length = 444 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 87/287 (30%), Positives = 145/287 (50%), Gaps = 23/287 (8%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIH 93 +D VRE ++ + L+ +D+ + V + V + K ++V+ VQ+V+ +++H Sbjct: 24 EDDVREAMKQVRIALLEADVNLKVVRDFVARVTEKAIGEEVAKSLTPVQQVI----KIVH 79 Query: 94 KMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + L+ L N + P VI+++G+ G GKTT KL+ + G + +L A D + Sbjct: 80 QELIDLLGQANVPLAEARPGPTVIMLIGLQGSGKTTTAAKLALWLRKKGKRPLLVAADIY 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAI QL+ + +A A ++A+ + + +IIDTAGRL + Sbjct: 140 RPAAITQLESLGRQLGIPVHAEGTQVSPPEIARHALRRARDENLTHVIIDTAGRLQIDEP 199 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LMA + ++ + P L V+DA GQ A+R E F+ G TG+I TK+DG A Sbjct: 200 LMAELEQINAAVD------PVERLLVVDAMIGQEAVRVAEEFNRRVGLTGVIFTKVDGDA 253 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGI--NDLEPFVAKDFSAVITGCLD 315 RGG + + +P+ FLG GE + + +EPF ++ I G D Sbjct: 254 RGGAALSVRAVTGVPIKFLGSGEKVEASTIEPFHPDRLASRILGMGD 300 >gi|21910377|ref|NP_664645.1| putative signal recognition particle -inhibited division protein [Streptococcus pyogenes MGAS315] gi|21904574|gb|AAM79448.1| putative signal recognition particle -inhibited division protein [Streptococcus pyogenes MGAS315] Length = 520 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 89/308 (28%), Positives = 159/308 (51%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L++ I ++L + V +E+ L+ +D+ + V + ++ + + Sbjct: 3 FESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130 ++ Q++L V+E + +L S+ D S + P +I++VG+ G GKTT GK Sbjct: 63 HEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGTGKTTFAGK 120 Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187 L+ K+ + + ++ A D +R AAIDQLK + + ++G+D +A + + + Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVRKGLE 178 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 QA+ + D ++IDTAGRL + LM + +R +K L P+ +L V+D+ GQ A Sbjct: 179 QARENRNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQEAAN 232 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 F+ TG+++TK+DG RGG + + P+ F G+GE I D+E F S Sbjct: 233 VAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRMS 292 Query: 308 AVITGCLD 315 + I G D Sbjct: 293 SRILGMGD 300 >gi|253755628|ref|YP_003028768.1| signal recognition particle protein [Streptococcus suis BM407] gi|251818092|emb|CAZ55886.1| signal recognition particle protein [Streptococcus suis BM407] Length = 512 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 108/208 (51%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++ G+ G GKTT GKL+ K+ + + +L A D +R AAIDQLK + D Sbjct: 101 PTIIMMAGLQGAGKTTFTGKLANKLKQEENARPLLIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAAL--AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 E+G+ AL + +QA+A D ++IDTAGRL + LM + R +K Sbjct: 159 PVFELGNQVPALEIVRQGLEQAKANHNDYVLIDTAGRLQIDQALMTEL----REIKEF-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+ TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNDQLAITGVILTKIDGDTRGGAALSVRHITGQPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|227488603|ref|ZP_03918919.1| signal recognition particle protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227091497|gb|EEI26809.1| signal recognition particle protein [Corynebacterium glucuronolyticum ATCC 51867] Length = 538 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 87/282 (30%), Positives = 145/282 (51%), Gaps = 26/282 (9%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + V + ++ + + +DVS Q+V+ V+E + ++L ++ Sbjct: 30 LLEADVSLPVVRGFIKRIKERAGGQDVSQALNPAQQVVKIVNEELIEILGGETRHLQM-A 88 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164 + P VI++ G+ G GKTT+ GKL+K ++ G ML A D R A+ QL+I +R Sbjct: 89 KNPPTVIMLAGLQGAGKTTLAGKLAKHLASQGHTPMLVACDLQRPGAVQQLQIVGERAGV 148 Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 T+ D E+G+ D +A + ++A+ ++ DV+I+DTAGRL + LM Sbjct: 149 PTFAPDPGTTLDTTEHEMGTSHGDPVLVAKQGIEEAKRQQRDVVIVDTAGRLGIDEELMR 208 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 IR D P VL V+DA GQ+A++ + F G TG+ +TK+DG ARGG Sbjct: 209 QASN-IR-----DAVNPDEVLFVIDAMIGQDAVQTAQAFRDGVGFTGVALTKLDGDARGG 262 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F GE ++D + F + ++ I G D Sbjct: 263 AALSIREVTGKPIMFASTGEKLDDFDVFHPERMASRILGMGD 304 >gi|193216162|ref|YP_001997361.1| signal recognition particle protein [Chloroherpeton thalassium ATCC 35110] gi|193089639|gb|ACF14914.1| signal recognition particle protein [Chloroherpeton thalassium ATCC 35110] Length = 449 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 81/268 (30%), Positives = 130/268 (48%), Gaps = 12/268 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + VE++ + ++V Q ++ V + + K + K N Sbjct: 38 LLDADVNYKVTKNFVEQVRKQALGEEVIKSVSPAQMIVKIVHDELVKAMGGEQKDINLKT 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P VI+V G+ G GKTT KL+ + G +L A D +R AAI+QLK + Sbjct: 98 SRMPAVIMVAGLQGSGKTTFTAKLANLLKKKGRAPLLIAADVYRPAAIEQLKTLGAQIGV 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 E DA A + + A+ +V I+DTAGRL + +MA ++ R L Sbjct: 158 PVFSIE-EKDALKAAKQGIEFAKQNSKNVAIVDTAGRLQIDEEMMAEAERLKREL----- 211 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 +P +L V+D+ GQ A+ ++F+ G+++TKMDG RGG + I P+ Sbjct: 212 -SPEEILFVVDSMIGQEAVNTAKVFNDRLDFDGVVLTKMDGDTRGGAALSIKTVVDKPIK 270 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 FL GE ++DL+ F + + I G D Sbjct: 271 FLSQGEKVDDLDIFYPERMAQRILGMGD 298 >gi|83746816|ref|ZP_00943864.1| signal recognition particle, subunit ffh/srp54 [Ralstonia solanacearum UW551] gi|207721472|ref|YP_002251912.1| gtp-binding signal recognition particle srp54, g-domain protein [Ralstonia solanacearum MolK2] gi|207744368|ref|YP_002260760.1| gtp-binding signal recognition particle srp54, g-domain protein [Ralstonia solanacearum IPO1609] gi|83726585|gb|EAP73715.1| signal recognition particle, subunit ffh/srp54 [Ralstonia solanacearum UW551] gi|206586632|emb|CAQ17218.1| gtp-binding signal recognition particle srp54, g-domain protein [Ralstonia solanacearum MolK2] gi|206595773|emb|CAQ62700.1| gtp-binding signal recognition particle srp54, g-domain protein [Ralstonia solanacearum IPO1609] Length = 478 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 117/221 (52%), Gaps = 8/221 (3%) Query: 97 MPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAA 154 +P+ + + + P +IL+ G+ G GKTT +GKL+K + + K V+ + D +R AA Sbjct: 105 LPMGRAAELNLNVQPPAIILMAGLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAA 164 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 I QLK +++ ADF S+ +A A A+ DVLI+DTAGRL + +M Sbjct: 165 IAQLKTVSEQVGADFFPSQPDQKPVDIAAAALDWAKKHYHDVLIVDTAGRLGIDEAMMQE 224 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 I + LK P L V+DA GQ+A+ + F+ TG+++TK+DG ARGG Sbjct: 225 IAALHATLK------PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDARGGA 278 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ F+GV E ++ LEPF + I G D Sbjct: 279 ALSVRHITGKPIKFVGVAEKLDGLEPFYPDRMAQRILGMGD 319 >gi|302525168|ref|ZP_07277510.1| signal recognition particle protein [Streptomyces sp. AA4] gi|302434063|gb|EFL05879.1| signal recognition particle protein [Streptomyces sp. AA4] Length = 512 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 89/308 (28%), Positives = 150/308 (48%), Gaps = 22/308 (7%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +LT S S K + DI ++ R E+ L+ +D+ + V + + ++ + Sbjct: 8 RLTSALQSLSRKGRLSDADIDATAR-------EIRIALLEADVALPVVKAFIAKIKDRAK 60 Query: 76 AKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +VS Q+V+ V+E + +L ++ N + P VI++ G+ G GKTT+ GK Sbjct: 61 GAEVSQALNPAQQVVKIVNEELVGILGGETRRLNL-AKNPPSVIMLAGLQGAGKTTLAGK 119 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187 L+ + G ML A D R A++QL+I +R E G+ D +A A + Sbjct: 120 LAMWLKKQGHAPMLVACDLQRPNAVNQLQIVGERAGVTTFAPEPGNGVGDPVDVARRAIE 179 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 +A+ + D++++DTAGRL + LM + ++ P VL V+DA GQ+A+ Sbjct: 180 EAKHAQYDIVVVDTAGRLGVDEELMKQAADIREAVQ------PDEVLFVVDAMIGQDAVT 233 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 E F G TG+++TK+DG ARGG + + P+ F GE + D + F + Sbjct: 234 TAEAFRDGVGFTGVVLTKLDGDARGGAALSVREVTGQPILFASNGEKLEDFDTFHPDRMA 293 Query: 308 AVITGCLD 315 + I G D Sbjct: 294 SRILGMGD 301 >gi|194398377|ref|YP_002037890.1| signal recognition particle protein [Streptococcus pneumoniae G54] gi|194358044|gb|ACF56492.1| signal recognition particle protein [Streptococcus pneumoniae G54] Length = 523 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QAQ D ++IDTAGRL + +LM +R +K L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|146318530|ref|YP_001198242.1| Signal recognition particle GTPase [Streptococcus suis 05ZYH33] gi|146320726|ref|YP_001200437.1| Signal recognition particle GTPase [Streptococcus suis 98HAH33] gi|253751657|ref|YP_003024798.1| signal recognition particle protein [Streptococcus suis SC84] gi|253753559|ref|YP_003026700.1| signal recognition particle protein [Streptococcus suis P1/7] gi|145689336|gb|ABP89842.1| Signal recognition particle GTPase [Streptococcus suis 05ZYH33] gi|145691532|gb|ABP92037.1| Signal recognition particle GTPase [Streptococcus suis 98HAH33] gi|251815946|emb|CAZ51560.1| signal recognition particle protein [Streptococcus suis SC84] gi|251819805|emb|CAR45741.1| signal recognition particle protein [Streptococcus suis P1/7] gi|292558300|gb|ADE31301.1| Signal recognition particle protein [Streptococcus suis GZ1] gi|319758083|gb|ADV70025.1| Signal recognition particle GTPase [Streptococcus suis JS14] Length = 512 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 108/208 (51%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++ G+ G GKTT GKL+ K+ + + +L A D +R AAIDQLK + D Sbjct: 101 PTIIMMAGLQGAGKTTFTGKLANKLKQEENARPLLIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAAL--AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 E+G+ AL + +QA+A D ++IDTAGRL + LM + R +K Sbjct: 159 PVFELGNQVPALEIVRQGLEQAKANHNDYVLIDTAGRLQIDQALMTEL----REIKEF-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+ TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNDQLAITGVILTKIDGDTRGGAALSVRHITGQPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|261749270|ref|YP_003256955.1| signal recognition particle protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497362|gb|ACX83812.1| signal recognition particle protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 450 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 151/304 (49%), Gaps = 15/304 (4%) Query: 15 RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +KL K F LK IT+I + + + +R L D + I QK+ E+ + K+ Sbjct: 7 KKLNKAFHI--LKGNSKITEINIAETMKE-IRRALIDADVNYKIAKTFVQKVKEKSIGKK 63 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 ++ ++++ +L++ L+ L K + S+ P +IL+ G+ G GKT+ KL+ Sbjct: 64 VLTSLNPKQLII---KLVYDELVTLMGKKNREINISNNPSIILICGLQGSGKTSFSSKLA 120 Query: 133 KKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K +L A D +R AAIDQLKI AD+ + + + ++ A Sbjct: 121 FFLCRKKNKNPLLVAADIYRPAAIDQLKIIADKVHLPVFFLKENKNVIEIIEKSLIYASK 180 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 KK +V+IIDTAGRL + +M I K+ + P L V+D+ TGQ+A+ ++ Sbjct: 181 KKYNVVIIDTAGRLAIDKKMMDEIQKISQY------SNPDETLFVVDSMTGQDAINTAQI 234 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F G++MTK+DG +RGG I + P+ F+ GE I D+E F + + I Sbjct: 235 FSHTLNFDGIVMTKLDGDSRGGAAITMSSVIGKPIKFISNGEKIEDIEIFYPERIANRIL 294 Query: 312 GCLD 315 G D Sbjct: 295 GMGD 298 >gi|157964240|ref|YP_001499064.1| Signal recognition particle protein [Rickettsia massiliae MTU5] gi|157844016|gb|ABV84517.1| Signal recognition particle protein [Rickettsia massiliae MTU5] Length = 452 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 151/290 (52%), Gaps = 16/290 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89 I++ ++D +R+ + L+ SD+ + V + + E+ K ++V SV Q ++ + Sbjct: 24 ILTEAQIDAAMRD-IRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKILH 82 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 E + +L + + +P V L+VG+ G GKTT KL+ ++ + KV+L + D Sbjct: 83 EEMINLLASSESETKLNLNSKPPVNFLMVGLQGSGKTTASSKLALRLRNQNKKVLLVSLD 142 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 T+R AA +QL I A+ + + G + + A +A+ DV+I DTAGR H + Sbjct: 143 TYRPAAQEQLAILANSVQINSLPIVQGEEPLDIVKRAIAEAKISAYDVVIYDTAGRTHID 202 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 +M + ++++ P L V+D+ TGQ+A+ F+ +GLI++++DG Sbjct: 203 KAMMEEALAIKKIVE------PTETLLVIDSMTGQDAVVTASSFNEKLEISGLILSRIDG 256 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 ++GG + + K P+ FL GE + DLE F AK ++ I LD G+ Sbjct: 257 DSKGGAALSVKYITKKPIKFLSSGENLTDLEEFDAKRLASRI---LDMGD 303 >gi|68161017|gb|AAY86940.1| lr0017 [Lactobacillus reuteri] Length = 260 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/235 (31%), Positives = 121/235 (51%), Gaps = 8/235 (3%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-L 140 Q+++ V++ + K++ + P N H P VI++VG+ G GKTT GKL+ ++ + Sbjct: 13 QQIVKIVNDELTKLMGEEAVPLNK-APHIPTVIMMVGLQGAGKTTTAGKLALRLKNENHA 71 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 + M A D +R AAI QL+ AD+ D + E + A+ D +IID Sbjct: 72 RPMFIAADVYRPAAITQLQQVADQIDVPVFEKGTDVDPVEIVREGMEVAKKNHNDYVIID 131 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL + LM + + ++ P+ +L V+D+ TGQNA+ + F TG Sbjct: 132 TAGRLQIDEQLMDELANIKELVN------PNEILLVIDSMTGQNAVNTAQGFDDKLDITG 185 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +++TK+DG RGG + I P+ F+G GE + DL+ F ++ I G D Sbjct: 186 VVLTKLDGDTRGGAAMSIRAVTGKPIKFVGEGEKMEDLDVFHPDRMASRILGMGD 240 >gi|15901147|ref|NP_345751.1| signal recognition particle protein [Streptococcus pneumoniae TIGR4] gi|111658514|ref|ZP_01409180.1| hypothetical protein SpneT_02000341 [Streptococcus pneumoniae TIGR4] gi|148989312|ref|ZP_01820692.1| glucose-inhibited division protein B [Streptococcus pneumoniae SP6-BS73] gi|148998927|ref|ZP_01826362.1| glucose-inhibited division protein B [Streptococcus pneumoniae SP11-BS70] gi|149002661|ref|ZP_01827593.1| glucose-inhibited division protein B [Streptococcus pneumoniae SP14-BS69] gi|168487456|ref|ZP_02711964.1| signal recognition particle protein [Streptococcus pneumoniae CDC1087-00] gi|168491206|ref|ZP_02715349.1| signal recognition particle protein [Streptococcus pneumoniae CDC0288-04] gi|168493207|ref|ZP_02717350.1| signal recognition particle protein [Streptococcus pneumoniae CDC3059-06] gi|168575742|ref|ZP_02721657.1| signal recognition particle protein [Streptococcus pneumoniae MLV-016] gi|221231975|ref|YP_002511127.1| signal recognition particle protein [Streptococcus pneumoniae ATCC 700669] gi|225859083|ref|YP_002740593.1| signal recognition particle protein [Streptococcus pneumoniae 70585] gi|237649986|ref|ZP_04524238.1| signal recognition particle protein [Streptococcus pneumoniae CCRI 1974] gi|237821108|ref|ZP_04596953.1| signal recognition particle protein [Streptococcus pneumoniae CCRI 1974M2] gi|307067936|ref|YP_003876902.1| signal recognition particle GTPase [Streptococcus pneumoniae AP200] gi|14972772|gb|AAK75391.1| signal recognition particle protein [Streptococcus pneumoniae TIGR4] gi|147755237|gb|EDK62289.1| glucose-inhibited division protein B [Streptococcus pneumoniae SP11-BS70] gi|147759272|gb|EDK66265.1| glucose-inhibited division protein B [Streptococcus pneumoniae SP14-BS69] gi|147925290|gb|EDK76369.1| glucose-inhibited division protein B [Streptococcus pneumoniae SP6-BS73] gi|183569731|gb|EDT90259.1| signal recognition particle protein [Streptococcus pneumoniae CDC1087-00] gi|183574503|gb|EDT95031.1| signal recognition particle protein [Streptococcus pneumoniae CDC0288-04] gi|183576649|gb|EDT97177.1| signal recognition particle protein [Streptococcus pneumoniae CDC3059-06] gi|183578377|gb|EDT98905.1| signal recognition particle protein [Streptococcus pneumoniae MLV-016] gi|220674435|emb|CAR68988.1| signal recognition particle protein [Streptococcus pneumoniae ATCC 700669] gi|225720844|gb|ACO16698.1| signal recognition particle protein [Streptococcus pneumoniae 70585] gi|301794362|emb|CBW36790.1| signal recognition particle protein [Streptococcus pneumoniae INV104] gi|306409473|gb|ADM84900.1| Signal recognition particle GTPase [Streptococcus pneumoniae AP200] gi|332073626|gb|EGI84105.1| signal recognition particle protein [Streptococcus pneumoniae GA17570] gi|332203136|gb|EGJ17204.1| signal recognition particle protein [Streptococcus pneumoniae GA47901] Length = 523 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QAQ D ++IDTAGRL + +LM +R +K L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|229098314|ref|ZP_04229261.1| Signal recognition particle protein [Bacillus cereus Rock3-29] gi|229104407|ref|ZP_04235076.1| Signal recognition particle protein [Bacillus cereus Rock3-28] gi|229117331|ref|ZP_04246709.1| Signal recognition particle protein [Bacillus cereus Rock1-3] gi|228666231|gb|EEL21695.1| Signal recognition particle protein [Bacillus cereus Rock1-3] gi|228679105|gb|EEL33313.1| Signal recognition particle protein [Bacillus cereus Rock3-28] gi|228685212|gb|EEL39143.1| Signal recognition particle protein [Bacillus cereus Rock3-29] Length = 449 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 110/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K ML A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ D ++IDTAGRLH + LM + K+ V Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAN---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+DA TGQ+A+ + FH G TG+++TK+DG RGG + I P+ Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHDQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ +E F + ++ I G D Sbjct: 273 FAGMGEKLDAIEAFHPERMASRILGMGD 300 >gi|226365994|ref|YP_002783777.1| signal recognition particle protein [Rhodococcus opacus B4] gi|226244484|dbj|BAH54832.1| signal recognition particle protein [Rhodococcus opacus B4] Length = 535 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 97/320 (30%), Positives = 152/320 (47%), Gaps = 34/320 (10%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + D+ RL D E+ L+ +D+ + V + + ++ K A Sbjct: 9 FESLSDRLTGALKDLRGKGRLSGADIDATCREIRLALLEADVALPVVRSFIAKI--KERA 66 Query: 77 KDVSV-------QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 K V V Q+V+ V+E + +L ++ + + P VI++ G+ G GKTT+ G Sbjct: 67 KGVEVSAALNPAQQVVKIVNEELVGILGGETRRLAFAKTP-PTVIMLAGLQGSGKTTLAG 125 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS------------- 176 KL+K + D G +L A D R A+ QL+I +R A G+ Sbjct: 126 KLAKWLRDQGHTPLLVACDLQRPGAVTQLQIVGERAGATVFAPHPGTSIGGGDNELGITA 185 Query: 177 -DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 D +A ++A+ K+ DV+I+DTAGRL ++ LMA IR D P + Sbjct: 186 ADPVEVARAGVEEARNKQFDVVIVDTAGRLGIDADLMAQAAG-IR-----DAVNPDETIF 239 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 VLDA GQ+A+ E F G TG+++TK+DG ARGG + + P+ F GE + Sbjct: 240 VLDAMIGQDAVSTAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGQPILFASTGEKL 299 Query: 296 NDLEPFVAKDFSAVITGCLD 315 D + F ++ I G D Sbjct: 300 EDFDVFHPDRMASRILGMGD 319 >gi|157165369|ref|YP_001466989.1| signal recognition particle protein [Campylobacter concisus 13826] gi|112800915|gb|EAT98259.1| signal recognition particle protein [Campylobacter concisus 13826] Length = 446 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 71/217 (32%), Positives = 115/217 (52%), Gaps = 9/217 (4%) Query: 99 LSKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 L+ P N F + P ++L+ G+ G GKTT KL+ + KV++AA D R AA+ Sbjct: 79 LTAPGNQGFVYAPVAPTIVLMAGLQGSGKTTTTIKLANYLKLRKKKVLVAACDLQRLAAV 138 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 +QL+ D E ++ +A EA ++A++ DVL++DTAGRL + LM I Sbjct: 139 EQLRQLCVANEIDLFYIENENNPIKVAKEALEKAKSGLYDVLLVDTAGRLAIDEKLMQEI 198 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 + + PH + V DA +GQ+A++ F+ + G +G+I++K D ++GG Sbjct: 199 KDVKNAIN------PHEIFYVADAMSGQDAVKTATSFNEILGISGVILSKFDSDSKGGVA 252 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 I I IP+ F+G GE + D+E F+ + I G Sbjct: 253 ISIAKQLNIPLRFVGTGEKVADIESFIPDRIVSRIMG 289 >gi|307706752|ref|ZP_07643557.1| signal recognition particle protein [Streptococcus mitis SK321] gi|307617837|gb|EFN96999.1| signal recognition particle protein [Streptococcus mitis SK321] Length = 523 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QAQ D ++IDTAGRL + +LM +R +K L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|170750017|ref|YP_001756277.1| signal recognition particle protein [Methylobacterium radiotolerans JCM 2831] gi|170656539|gb|ACB25594.1| signal recognition particle protein [Methylobacterium radiotolerans JCM 2831] Length = 521 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 71/192 (36%), Positives = 107/192 (55%), Gaps = 7/192 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P IL+VG+ G GKTT K+++++SD KV+LA+ DT R AA++QL + A + + Sbjct: 100 PVPILMVGLQGSGKTTTTAKIARRLSDREKRKVLLASLDTRRPAAMEQLAVLAKQVGVES 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G A +A A A+ DV+++DTAGR + LMA ++ K Sbjct: 160 LPIVAGQSAVQIAKRAMDAARLGGFDVVMLDTAGRTTVDEGLMAEAAEVKAATK------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH VL V DA TGQ+A+ F G TG+++T+MDG +RGG + + P+ + Sbjct: 214 PHEVLLVADALTGQDAVNTARAFDQRLGVTGIVLTRMDGDSRGGAALSMRAVTGKPIKLV 273 Query: 290 GVGEGINDLEPF 301 GVGE ++ LE F Sbjct: 274 GVGEKVDALEEF 285 >gi|219685536|ref|ZP_03540353.1| signal recognition particle protein [Borrelia garinii Far04] gi|219672935|gb|EED29957.1| signal recognition particle protein [Borrelia garinii Far04] Length = 444 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 83/284 (29%), Positives = 143/284 (50%), Gaps = 18/284 (6%) Query: 42 DDGVREELE---DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 D + E +E + L+ +D+ + V ++ + ++ + +K + V R + S+ I + Sbjct: 24 DKNISEAIEIIKNSLVDADVNLRVVRRFLNSIIEE--SKGIKVLRGIDPKSQFIKIVNDN 81 Query: 99 LSKPF---NWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 L K +++ S P IL++G+ G GKTT KLS ++ KV+L A DTFR Sbjct: 82 LVKFLGGKSYELSLHPVNKQSYILMLGLQGSGKTTTCAKLSLRLKKENRKVLLVAADTFR 141 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 +AA++QLKI ++ D + + K A+++ D +I+DT GRL S+L Sbjct: 142 AAAVEQLKILGNQIGVPVFSLAGEKDPIKIVKASMKFAESEFFDSVIVDTRGRLEVESLL 201 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 + I K+ +LK P + V+D+ GQ A+ + F+ G T I +K D R Sbjct: 202 VEEIKKIKDILK------PTETILVVDSMMGQVAVNIAKEFNENVGLTSAIFSKFDSDTR 255 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 GG ++ +P+ F+GVGE + DL+ F + ++ I G D Sbjct: 256 GGAVLSFKSICAVPIKFIGVGERVEDLDSFYPERIASRILGMGD 299 >gi|227549002|ref|ZP_03979051.1| signal recognition particle protein [Corynebacterium lipophiloflavum DSM 44291] gi|227078912|gb|EEI16875.1| signal recognition particle protein [Corynebacterium lipophiloflavum DSM 44291] Length = 546 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 91/282 (32%), Positives = 139/282 (49%), Gaps = 26/282 (9%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + V + ++ + + DVS Q+V+ V E + +L ++ N Sbjct: 38 LLEADVSLTVVRAFIKRVKERSLGADVSEALNPAQQVIKIVDEELTNILGGETRRLNLAK 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164 + P VI++ G+ G GKTT+ GKL+ ++ G ML A D R A+ QL+I +R Sbjct: 98 TP-PTVIMLAGLQGAGKTTLAGKLANHLTKQGHTPMLVACDLQRPGAVQQLQIVGERAGV 156 Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 TS D + E+G+ D A+A + A K DV+IIDTAGRL + LM Sbjct: 157 PTFAPDPGTSLDSLDHEMGTSHGDPVAVATAGIEHAVRAKNDVVIIDTAGRLGIDETLMT 216 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + IR D P VL V+DA GQ+A+ + F TG+++TK+DG ARGG Sbjct: 217 Q-ARNIR-----DAVNPDEVLFVIDAMIGQDAVATAQAFADGVDFTGVVLTKLDGDARGG 270 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F GE ++D + F S+ I G D Sbjct: 271 AALSIREVTGKPILFASTGEKLDDFDIFHPDRMSSRILGMGD 312 >gi|307708829|ref|ZP_07645291.1| signal recognition particle protein [Streptococcus mitis NCTC 12261] gi|307615195|gb|EFN94406.1| signal recognition particle protein [Streptococcus mitis NCTC 12261] Length = 523 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QAQA D ++IDTAGRL + +LM +R +K L Sbjct: 159 PVFALGTEVPAVDIVRQGLEQAQANHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+ TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNTQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|285017743|ref|YP_003375454.1| signal recognition particle (srp) component with 45s rna (ffs) protein [Xanthomonas albilineans GPE PC73] gi|283472961|emb|CBA15466.1| probable signal recognition particle (srp) component with 4.5s rna (ffs) protein [Xanthomonas albilineans] Length = 458 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 89/292 (30%), Positives = 147/292 (50%), Gaps = 25/292 (8%) Query: 39 RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 R ++ +RE E+ L+ +D+ + V Q ++E + + ++V Q ++ V + Sbjct: 21 RLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKVVRD 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149 + ++ + N + P ++L+ G+ G GKTT +GKL+K + + K VM+ + D Sbjct: 81 ELTAVMGSAASDLNLNVPA-PAIVLMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADV 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI+QLK A++ F SE + A A+ VDVL++DTAGRL + Sbjct: 140 YRPAAIEQLKTLAEQVGVLFFPSESSQQPVDIVRAAIADARKSFVDVLLVDTAGRLAIDE 199 Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 +MA I + HA P L V+DA TGQ+A + F TG+++TK Sbjct: 200 AMMAEIKAL---------HAAITPAETLFVVDAMTGQDAANTAKAFSDALPLTGVVLTKT 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 DG ARGG + + P+ F+GVGE + L+ F ++ I LD G+ Sbjct: 251 DGDARGGAALSVRYITGRPIKFIGVGEKPDGLDVFHPDRLASRI---LDMGD 299 >gi|222832532|gb|EEE71009.1| predicted protein [Populus trichocarpa] Length = 425 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 77/206 (37%), Positives = 111/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT GKL+K + + K V+ + D +R AAI QLK +++ DF Sbjct: 92 PAVILMAGLQGAGKTTTSGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGVDF 151 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S+ +A A A+ DVLI+DTAGRL + +M I + LK Sbjct: 152 FPSQPDQKPVEIARAALDWARKHYHDVLIVDTAGRLGIDEAMMQEIAALHAELK------ 205 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG ARGG + + P+ F+ Sbjct: 206 PAETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDARGGAALSVRHITGRPIKFV 265 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE ++ LEPF A + I G D Sbjct: 266 GVGEKLDGLEPFYADRMAQRILGMGD 291 >gi|153954026|ref|YP_001394791.1| hypothetical protein CKL_1401 [Clostridium kluyveri DSM 555] gi|219854640|ref|YP_002471762.1| hypothetical protein CKR_1297 [Clostridium kluyveri NBRC 12016] gi|146346907|gb|EDK33443.1| Hypothetical protein CKL_1401 [Clostridium kluyveri DSM 555] gi|219568364|dbj|BAH06348.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 449 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 89/309 (28%), Positives = 154/309 (49%), Gaps = 26/309 (8%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F + KL+E + + +S + + D +RE ++ L+ +D+ V + V+ + K Sbjct: 3 FEGLASKLQETLKKLRGKGKLSEKDIKDAMRE-VKLALLEADVNYKVVRNFVKSVSEKCL 61 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH---VILVVGVNGVGKTTV 127 ++V Q+V+ +++++ L L + P +I++VG+ G GKTT+ Sbjct: 62 GEEVLKSLTPAQQVI----KIVNEELTSLMGNSESSIEYSPDGLTIIMLVGLQGSGKTTM 117 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 GKL+ ++ K +L A D +R AAI QL+I + +A + A Sbjct: 118 CGKLALQLRKKNKKPLLVACDIYRPAAIKQLQIVGKQIDIPVFSMGDKVEAVDICKGAVT 177 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH-APHSVLQVLDATTGQNAL 246 A+ K++V+IIDTAGRL + LM LK++ + P +L V+D+ TGQ+A+ Sbjct: 178 YAKDNKLNVIIIDTAGRLQIDEELMDE-------LKQIKENINPQEILLVVDSMTGQDAV 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F+ G+++TK+DG RGG + I P+ F+G+GE +NDLE F Sbjct: 231 NVASSFNEQLNINGVVLTKLDGDTRGGAALSIRAITGKPIKFVGMGEKMNDLEVFYPDRM 290 Query: 307 SAVITGCLD 315 ++ I G D Sbjct: 291 ASRILGMGD 299 >gi|225010553|ref|ZP_03701024.1| signal recognition particle protein [Flavobacteria bacterium MS024-3C] gi|225005382|gb|EEG43333.1| signal recognition particle protein [Flavobacteria bacterium MS024-3C] Length = 445 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 73/212 (34%), Positives = 111/212 (52%), Gaps = 7/212 (3%) Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 + + P +IL+ G+ G GKTT GKL+ + S +L A D +R AAIDQL++ D Sbjct: 93 LNLADNPSIILMAGLQGSGKTTFSGKLALYLKSKKSKNPLLVACDVYRPAAIDQLQVVGD 152 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + ++ S+ A+A A+A +++IIDTAGRL + +MA I + + + Sbjct: 153 QIGVAVYSNKEESNPVAIAQAGIAHAKANGHNLVIIDTAGRLAVDEAMMAEIANIHKAI- 211 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 P L V+DA TGQ+A+ + FH V G+I+TK+DG RGG I I Sbjct: 212 -----TPSETLFVVDAMTGQDAVNTAKAFHDVLNFDGVILTKLDGDTRGGAAISIKSVVT 266 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + L+ F + + I G D Sbjct: 267 KPIKFIGTGEKMEALDVFYPERMADRILGMGD 298 >gi|300690374|ref|YP_003751369.1| signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Ralstonia solanacearum PSI07] gi|299077434|emb|CBJ50060.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Ralstonia solanacearum PSI07] Length = 479 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 117/221 (52%), Gaps = 8/221 (3%) Query: 97 MPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAA 154 +P+ + + + P +IL+ G+ G GKTT +GKL+K + + K V+ + D +R AA Sbjct: 106 LPMGRAAELNLNVQPPAIILMAGLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAA 165 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 I QLK +++ ADF S+ +A A A+ DVLI+DTAGRL + +M Sbjct: 166 IAQLKTVSEQVGADFFPSQPEQKPVDIAAAALDWAKKHYHDVLIVDTAGRLGIDEAMMQE 225 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 I + LK P L V+DA GQ+A+ + F+ TG+++TK+DG ARGG Sbjct: 226 IAALHAALK------PAETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDARGGA 279 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ F+GV E ++ LEPF + I G D Sbjct: 280 ALSVRHITGKPIKFVGVAEKLDGLEPFYPDRMAQRILGMGD 320 >gi|270284295|ref|ZP_05965878.2| signal recognition particle protein [Bifidobacterium gallicum DSM 20093] gi|270277497|gb|EFA23351.1| signal recognition particle protein [Bifidobacterium gallicum DSM 20093] Length = 542 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 94/329 (28%), Positives = 153/329 (46%), Gaps = 39/329 (11%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S +L+ F K K TDI DG E+ L+ +D+ + V + + Sbjct: 6 SLTDRLSNAFKHLKSKGKLSETDI-------DGTIREIRRALLDADVSLEVVRSFTGRVR 58 Query: 72 TKRYAKDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 + +VS Q+V+ V++ + +L + +P N+ P +I++ G+ G GKT Sbjct: 59 ERALGAEVSEALNPAQQVVKIVNDELTDILGQGVDRPINF-AKQPPTIIMLAGLQGAGKT 117 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------- 175 T+ GKL + D+G +L A D R A+ QL++ +R E G Sbjct: 118 TLAGKLGYWLKDSGHTPLLVAADLQRPNAVTQLEVVGERAGVPVYAPERGVQSDGGEAVA 177 Query: 176 ------SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 D +A ++ + A+ K D +IIDTAGRL + LM + R ++ D Sbjct: 178 APGQTSGDPVKVARDSIEYARRKLYDTVIIDTAGRLGVDEELM----QQARDIR--DAVQ 231 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P VL V+DA GQ+A+R + F+ TG++++K+DG ARGG + + P+ F Sbjct: 232 PQEVLFVIDAMIGQDAVRTAQAFNEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFA 291 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLDYGE 318 GEG+ D E F ++ I LD G+ Sbjct: 292 SNGEGLKDFEVFHPDRMASRI---LDMGD 317 >gi|294661294|ref|YP_003573170.1| hypothetical protein Aasi_1773 [Candidatus Amoebophilus asiaticus 5a2] gi|227336445|gb|ACP21042.1| hypothetical protein Aasi_1773 [Candidatus Amoebophilus asiaticus 5a2] Length = 442 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 82/274 (29%), Positives = 133/274 (48%), Gaps = 13/274 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSK 101 +E+ LI++D+ VA++I +++ T KDV Q VS+ + K++ S+ Sbjct: 32 KEIRRALIQADVNYKVAKQITDDIKTNALGKDVLAAVSPGQLFTKVVSDELTKLMG--SE 89 Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 + + + +P +IL+ G+ G GKTT KL+ + V+L A D +R AA +QL + Sbjct: 90 KASINLNGKPAIILMAGLQGSGKTTFSAKLANYLKRQNKSVLLVACDIYRPAAAEQLHVL 149 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 + + DA +A E + A+ V+IIDTAGR +G M + Sbjct: 150 GQQIDVEVFSKVDHKDAIQIAQEGIEYAKNTHKQVVIIDTAGR------QTVDVGMMQEI 203 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 K D P L V+DA GQ+A+ + F+ G+++TK+DG RGG + I Sbjct: 204 KKLQDTVKPAETLFVVDAMVGQDAVTTAQGFYEQLHFDGIVLTKLDGDTRGGAALSIRAV 263 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + DL+ F + I G D Sbjct: 264 VSKPIKFIGTGEKLTDLDLFYPDRMAQRILGMGD 297 >gi|145342437|ref|XP_001416189.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576414|gb|ABO94482.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 525 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 90/318 (28%), Positives = 158/318 (49%), Gaps = 32/318 (10%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW R L F T + +E + + +S ++ +L + SDI + ++ ++L Sbjct: 218 LSWCRDLV-SFRETHIS-EESLLPLTAS------IKHKLTQKNVTSDIADLLVTEVAQKL 269 Query: 71 LTKRYAKDVSVQRVLY-DVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVG 123 + K+ + S+ ++Y + E I ++L L++ + S RP VI VGVNGVG Sbjct: 270 VGKKVSTFQSLASIVYRSLEESIIRILSSAKKIDLLTEVGSARKSRRPFVIAFVGVNGVG 329 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 K+T + K+ +S VM+AA DTFR+ A++QL+ R D + +A Sbjct: 330 KSTSLSKVVHWLSQQNFSVMVAACDTFRAGAVEQLRTHCQRLDCALFERGYERDPSVIAQ 389 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A +QA + +DV++IDTAGR+ +N LM + K++ V + P L V +A G Sbjct: 390 QAIQQATRQGIDVVMIDTAGRMQDNEPLMRALAKLLSV------NLPDLTLFVGEALVGN 443 Query: 244 NALRQVEMF----HAVAGTT------GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVG 292 + + Q+ F A+ T G+ ++K D + G + +V IP+ F+G G Sbjct: 444 DGVSQILQFEHRLQALMQTEKKCVIDGIFLSKFDTIDNKVGTALSLVYASSIPIMFVGTG 503 Query: 293 EGINDLEPFVAKDFSAVI 310 + D+ F A++ + V+ Sbjct: 504 QMYKDVRTFQAENIATVL 521 >gi|119025229|ref|YP_909074.1| signal recognition particle protein [Bifidobacterium adolescentis ATCC 15703] gi|118764813|dbj|BAF38992.1| signal recognition particle protein [Bifidobacterium adolescentis ATCC 15703] Length = 549 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 92/324 (28%), Positives = 154/324 (47%), Gaps = 36/324 (11%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F+S + +L + S +L DG E+ L+ +D+ + V + + + Sbjct: 4 FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTSRIRERALG 63 Query: 77 KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +VS Q+V+ V+E + +L + +P N+ + P +I++ G+ G GKTT+ GK Sbjct: 64 TEVSEALNPAQQVVKIVNEELTAVLGAGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 122 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175 L + D+G +L A D R A+ QL++ +R E G Sbjct: 123 LGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVVSPGQT 182 Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 D +A +A + A+ K D +IIDTAGRL + LM K R ++ D P+ +L Sbjct: 183 TGDPVKVARDAVELAKQKLYDTVIIDTAGRLGVDEELM----KQARDIR--DAVQPNEIL 236 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DA GQ+A++ + F TG++++K+DG ARGG + + P+ F GEG Sbjct: 237 FVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEG 296 Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318 + D E F ++ I LD G+ Sbjct: 297 LKDFEVFHPDRMASRI---LDMGD 317 >gi|289168093|ref|YP_003446362.1| signal recognition particle protein Ffh [Streptococcus mitis B6] gi|288907660|emb|CBJ22497.1| signal recognition particle protein Ffh [Streptococcus mitis B6] Length = 523 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QAQ D ++IDTAGRL + +LM +R +K L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FAGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|289740969|gb|ADD19232.1| signal recognition particle subunit srp54 [Glossina morsitans morsitans] Length = 508 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 8/226 (3%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 ELI K++ P KP+ + +VI+ VG+ G GKTT KL+ K L DT Sbjct: 82 ELI-KLVDPGVKPYQ-PVKGKANVIMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+ A DQ+K A + F S D +A E + + + +++I+DT+GR Sbjct: 140 FRAGAYDQIKQNATKARIPFYGSYTEIDPVVIAQEGVEMFKREGFEMIIVDTSGRHKQEE 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 L +M+ V ++P +++ V+DAT GQ Q + F +I+TK+DG Sbjct: 200 SLFE---EMLAVANAINPD---NIIFVMDATIGQACEAQAKAFKGKVDIGSVIITKLDGH 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 A+GGG + V + P+ F+G GE I+D+EPF K F + + G D Sbjct: 254 AKGGGALSAVAATRSPIIFIGTGEHIDDMEPFKIKPFVSKLLGMGD 299 >gi|119173320|ref|XP_001239133.1| hypothetical protein CIMG_10155 [Coccidioides immitis RS] Length = 647 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 90/283 (31%), Positives = 137/283 (48%), Gaps = 40/283 (14%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101 +ED L++ ++ A ++ E EL+ K+ S+ L E + K+L P S Sbjct: 358 MEDHLLKKNVAREAALRLCEGVEHELVGKKTGSFQSIDSALRSAMESSLRKILTPTSSLD 417 Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 P N + RP+VI +VGVNGVGK+T + K+ + KV++AA DTFR Sbjct: 418 LLREIDAVTSPRNNQQARRPYVISIVGVNGVGKSTNLSKICFFLLQNNYKVLIAACDTFR 477 Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200 S A++QL++ A R + E G DAA +A +A A + DV++ID Sbjct: 478 SGAVEQLRVHA-RNLKELSEREQVGQIELYEKGYGKDAANVAKDAVAYAASNDFDVVLID 536 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258 TAGR HN+ LM+ + K + AP + V +A G +++ Q F+ G Sbjct: 537 TAGRRHNDQRLMSSLEKFAKFA------APDKIFMVGEALVGTDSVMQARNFNQAFGAGR 590 Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G I++K D G L+ +V IP+ FLGVG+ DL Sbjct: 591 SLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 633 >gi|17547530|ref|NP_520932.1| signal recognition particle protein [Ralstonia solanacearum GMI1000] gi|17429834|emb|CAD16518.1| probable gtp-binding signal recognition particle srp54, g-domain protein [Ralstonia solanacearum GMI1000] Length = 476 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 8/221 (3%) Query: 97 MPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAA 154 +P+ + + + P VIL+ G+ G GKTT +GKL+K + + K V+ + D +R AA Sbjct: 103 LPIGRAAELNLNVQPPAVILMAGLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAA 162 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 I QLK +++ ADF S+ +A A A+ DVLI+DTAGRL + +M Sbjct: 163 IAQLKTVSEQVGADFFPSQPEQKPVDIAAAALDWAKKHYHDVLIVDTAGRLGIDEAMMQE 222 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 I + LK P L V+DA GQ+A+ + F+ TG+++TK+DG ARGG Sbjct: 223 IAALHATLK------PAETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDARGGA 276 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ F+GV E ++ LEPF + I G D Sbjct: 277 ALSVRHITGKPIKFVGVAEKLDGLEPFYPDRMAQRILGMGD 317 >gi|299065641|emb|CBJ36813.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Ralstonia solanacearum CMR15] Length = 478 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 117/221 (52%), Gaps = 8/221 (3%) Query: 97 MPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAA 154 +P+ + + + P +IL+ G+ G GKTT +GKL+K + + K V+ + D +R AA Sbjct: 105 LPMGRAAELNLNVQPPAIILMAGLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAA 164 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 I QLK +++ ADF S+ +A A A+ DVLI+DTAGRL + +M Sbjct: 165 IAQLKTVSEQVGADFFPSQPEQKPVDIAAAALDWAKKHYHDVLIVDTAGRLGIDEAMMQE 224 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 I + LK P L V+DA GQ+A+ + F+ TG+++TK+DG ARGG Sbjct: 225 IAALHATLK------PAETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDARGGA 278 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ F+GV E ++ LEPF + I G D Sbjct: 279 ALSVRHITGKPIKFVGVAEKLDGLEPFYPDRMAQRILGMGD 319 >gi|189459673|ref|ZP_03008458.1| hypothetical protein BACCOP_00301 [Bacteroides coprocola DSM 17136] gi|189433632|gb|EDV02617.1| hypothetical protein BACCOP_00301 [Bacteroides coprocola DSM 17136] Length = 441 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 66/197 (33%), Positives = 105/197 (53%), Gaps = 7/197 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 + RP VIL+ G+ G GKTT GKL++ + + K +L A D +R AAI+QLK+ + Sbjct: 94 ELKGRPAVILMSGLQGSGKTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIEQLKVLGQQ 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 C D +A A ++A+AK D++I+DTAGRL + +M I + + Sbjct: 154 IEVPVYCELDSKDPVQIALNAIQEAKAKGYDLVIVDTAGRLAVDEQMMNEIEAIKNAIN- 212 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P L V+D+ TGQ+A+ F+ G+++TK+DG RGG + I Sbjct: 213 -----PDETLFVVDSMTGQDAVNTAREFNERLDFNGVVLTKLDGDTRGGAALSIRTVVNK 267 Query: 285 PVYFLGVGEGINDLEPF 301 P+ F+G GE ++ ++ F Sbjct: 268 PIKFVGTGEKLDAIDQF 284 >gi|152989330|ref|YP_001346757.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa PA7] gi|150964488|gb|ABR86513.1| signal recognition particle protein [Pseudomonas aeruginosa PA7] Length = 457 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L +D +++ L ++ L+ +D+ + V + V ++ + Sbjct: 2 FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNKVKERAVG 61 Query: 77 KDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGKLS 132 +VS +++ L L N D + P VIL+ G+ G GKTT GKL+ Sbjct: 62 TEVSKSLTPGQAFVKIVRAELEELMGAANEDLALSVAPPAVILMAGLQGAGKTTTAGKLA 121 Query: 133 KKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + + K VM+ + D +R AAI QL+ A F S++ A+A A ++A+ Sbjct: 122 RFLKERKKKSVMVVSADVYRPAAIKQLETLASEVGVTFFPSDVSQKPVAIAEAAIREARL 181 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K +DV+I+DTAGRLH ++ +M I ++ +K P L V+DA TGQ+A + Sbjct: 182 KFIDVVIVDTAGRLHIDADMMDEIRQVHAAIK------PVETLFVVDAMTGQDAANTAKA 235 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ TG+++TK+DG ARGG + + P+ FLG+GE L+PF ++ I Sbjct: 236 FNDALPLTGVVLTKVDGDARGGAALSVRAITGKPIKFLGMGEKSEALDPFHPDRVASRIL 295 Query: 312 GCLD 315 G D Sbjct: 296 GMGD 299 >gi|73662841|ref|YP_301622.1| signal recognition particle [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495356|dbj|BAE18677.1| signal recognition particle [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 455 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT GKL+ M K ML A D +R AAIDQL+ + Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAIDQLQTVGKQIDIPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + A K A+ + +D +IIDTAGRLH + LM + + + K Sbjct: 161 YSEGDQVKPQQIVENAIKHAKEEHLDFVIIDTAGRLHVDEALMQELSDVKEITK------ 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P ++ V+DA TGQ+A+ + F +G+ +TK+DG RGG + I + P+ F+ Sbjct: 215 PDEIMLVVDAMTGQDAVNVAQSFDEQLEVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFV 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+ E ++ LEPF + ++ I G D Sbjct: 275 GMSEKLDGLEPFHPERMASRILGMGD 300 >gi|218283558|ref|ZP_03489548.1| hypothetical protein EUBIFOR_02138 [Eubacterium biforme DSM 3989] gi|218215826|gb|EEC89364.1| hypothetical protein EUBIFOR_02138 [Eubacterium biforme DSM 3989] Length = 472 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 93/303 (30%), Positives = 155/303 (51%), Gaps = 24/303 (7%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A ESLS +L K F + S + K ++ + ++D ++E + L+ +D+ V + Sbjct: 1 MAFESLS--ERLNKAFKNISGQGK------LTEKNMNDMLKE-VRMSLLEADVNYDVVKS 51 Query: 66 IVEELLTKRYAKDV--SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH---VILVVGVN 120 VE + K ++V S+ V +++H L L + + ++++VG+ Sbjct: 52 FVENVKEKALGQEVLDSLNPGQM-VVKIVHDELQVLLGEEDARIHFKKQGMTMVMMVGLQ 110 Query: 121 GVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSAD-FVCSEIGSDA 178 G GKTT K++ + +V+L A D R AAI+QL+ + F C S A Sbjct: 111 GTGKTTASAKIANYCKNKLARRVLLVACDVVRPAAIEQLQTLGKSIDVEVFTCGPETS-A 169 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 A +A A+ ++ D++I DTAGRLH + LM + +M ++ P +L +D Sbjct: 170 VETAKQALTYAKDRQKDLVIFDTAGRLHIDEALMHELQQMKELV------VPDEILLTVD 223 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A TGQ+ + + F+ TGLI+TKMDG ARGGGL+ + +PV F+ GE ++DL Sbjct: 224 AMTGQDIVTVAKEFNEQLSVTGLIVTKMDGDARGGGLLSVRSITNVPVLFVSNGEKVDDL 283 Query: 299 EPF 301 E F Sbjct: 284 EEF 286 >gi|219123108|ref|XP_002181873.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406474|gb|EEC46413.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 308 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 87/262 (33%), Positives = 130/262 (49%), Gaps = 22/262 (8%) Query: 44 GVREELEDLLIRSDIGVAVA-QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102 G+R +LE + S V A ++ +E LTK V + R +S+ L +SK Sbjct: 49 GIRGKLEGKKLNSLYRVQTAVRQALESTLTKMLKMHVDLLR--NTMSKRGDNSLFKMSK- 105 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 P+VI VVG+NGVGK+T + KL+ G +L AGDTFRS A++QLK+ A Sbjct: 106 ------RAPYVIAVVGINGVGKSTSLAKLAYYFKQNGCSPLLVAGDTFRSGAVEQLKVHA 159 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 D + +A A + A + DV++IDTAGR+ NN LM +GK++ Sbjct: 160 SCLDIPMYSQGYSKDPSIVAKAAIQHATEENHDVVLIDTAGRMQNNVPLMKALGKLV--- 216 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFH---AVAGTTGLIMTKMDGTARGGGLIPIV 279 + P V+ V +A G + L Q MF + G GLI+TK D + G + Sbjct: 217 ---TENKPDFVILVCEALVGHDGLSQFTMFKQALGIRGIDGLILTKFDTVSDKVG-AALT 272 Query: 280 VTHKI--PVYFLGVGEGINDLE 299 +TH+ P+ F G G+ + L+ Sbjct: 273 LTHQTGAPIIFCGTGQKYHHLK 294 >gi|147919502|ref|YP_686758.1| signal recognition particle protein Srp54 [uncultured methanogenic archaeon RC-I] gi|121687852|sp|Q0W2G1|SRP54_UNCMA RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|110622154|emb|CAJ37432.1| signal recognition particle [uncultured methanogenic archaeon RC-I] Length = 444 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 95/300 (31%), Positives = 153/300 (51%), Gaps = 28/300 (9%) Query: 28 LKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQK----IVEELLTKRYAKDV 79 LK+ + I +S ++D D V ++++ +I++D+ V + K I LT+ + Sbjct: 10 LKDALRKIANSGKIDKEVIDEVVKDIQRAMIQADVNVKLVMKLSSTIKNRALTEAPPAGM 69 Query: 80 S----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 + V R++Y +EL++ ++ + P + + I++VG+ G GKTT K+++ Sbjct: 70 NSKEHVLRIVY--TELVN--IVGKATPV----ALQSQTIMMVGLQGSGKTTTSAKIARYF 121 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 + GLK + DT+R A DQLK D+ F DA A+ K+ K D Sbjct: 122 ARKGLKPAVICADTYRPGAYDQLKQLCDKLGVGFYGEAGNKDAVAIVRNGLKEMA--KYD 179 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 V I+DTAGR + L+ + K I L + D H +L VLDA GQ A Q F+ Sbjct: 180 VKIVDTAGRHALETDLIQEM-KDIYGLTKFD----HKLL-VLDAAIGQQASEQARAFNDA 233 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G TG+++TK+DGTA+GGG + V + F+GVGE +D+E F F + + G D Sbjct: 234 IGITGVVITKLDGTAKGGGALSAVSDTNTSIAFIGVGETPDDMERFDPDGFISRLLGMGD 293 >gi|54194|emb|CAA34386.1| unnamed protein product [Mus musculus] Length = 504 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E ++ + + +++I+DT+GR L L+ + Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE------ERLQVSNAIQ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 214 PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D EPF + F + + G D Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299 >gi|257094573|ref|YP_003168214.1| signal recognition particle protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047097|gb|ACV36285.1| signal recognition particle protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 451 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 111/209 (53%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P +IL+ G+ G GKTT +GKL+K + + KV++ + D +R AAI+QLK A + Sbjct: 97 TQPPAIILMAGLQGSGKTTTVGKLAKMLRETQKKKVLVVSCDIYRPAAIEQLKTVAGQAG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 ADF S +A A A+ DVL++DTAGRL + +M I ++ +K Sbjct: 157 ADFFPSTPTDKPVDIARNAVDWAKRHYHDVLLVDTAGRLAIDEAMMREIAELHTAIK--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA GQ+A+ F TG+I+TK+DG ARGG + + P+ Sbjct: 214 ---PIETLFVVDAMQGQDAITTARAFSETLPLTGVILTKLDGDARGGAALSVRHVTGRPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + G+GE + LE F + ++ I G D Sbjct: 271 KYAGIGEKLTGLEAFHPERMASRILGMGD 299 >gi|301167379|emb|CBW26961.1| signal recognition particle protein [Bacteriovorax marinus SJ] Length = 479 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 78/189 (41%), Positives = 104/189 (55%), Gaps = 5/189 (2%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCS 172 ILVVG+NG GKTT GKLS + K +L DTFR AA DQL A D+ S Sbjct: 103 ILVVGLNGQGKTTFSGKLSLHLKKKKNKKVLLVPVDTFRPAAKDQLITLAKSMDMDWFDS 162 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 ++ + +A A A+ K DV+IIDTAGRLH + LM I ++ L + DP Sbjct: 163 DLSTHPKLIAESAMNFAKENKYDVVIIDTAGRLHVDVELMGQIKEVRDSLAKFDPE---- 218 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 VL V DA TGQ A+ + FH TG++++KMD ARGG + I +P+ ++ G Sbjct: 219 VLMVADAMTGQEAVNVAKSFHETVNLTGVVLSKMDSDARGGAALSIRHVTGVPIKYISTG 278 Query: 293 EGINDLEPF 301 E + DLE F Sbjct: 279 EKMKDLELF 287 >gi|237802459|ref|YP_002887653.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia trachomatis B/Jali20/OT] gi|255310826|ref|ZP_05353396.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia trachomatis 6276] gi|255317126|ref|ZP_05358372.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia trachomatis 6276s] gi|231273693|emb|CAX10471.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia trachomatis B/Jali20/OT] gi|296435541|gb|ADH17715.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia trachomatis G/9768] gi|296436465|gb|ADH18635.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia trachomatis G/11222] gi|296437401|gb|ADH19562.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia trachomatis G/11074] gi|297139900|gb|ADH96658.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia trachomatis G/9301] gi|297748156|gb|ADI50702.1| signal recognition particle subunit Ffh/Srp54 [Chlamydia trachomatis D-EC] gi|297749036|gb|ADI51714.1| signal recognition particle subunit Ffh/Srp54 [Chlamydia trachomatis D-LC] Length = 448 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 111/204 (54%), Gaps = 9/204 (4%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P VIL+ G+ G GKTT KL+ KV++A+ D R +A++QL+ +T AD Sbjct: 99 PAVILLCGLQGAGKTTTCAKLADYFLREKKAKKVLVASCDLKRFSAVEQLEGLVKQTGAD 158 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 F E G+D +A EA + A+++ D++++DTAGRLH + LM + + RV Sbjct: 159 FFRRE-GNDPVDMAAEAVQHAKSQGYDLVLVDTAGRLHVDDALMDELVAIARV------T 211 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 +P L V++ GQ+A+ + F G TG++++ DG AR G ++ + P+ F Sbjct: 212 SPCETLFVMNLAMGQDAVVTAKAFDERLGLTGVVVSMADGDARAGAVLSVKSLLNKPIKF 271 Query: 289 LGVGEGINDLEPFVAKDFSAVITG 312 G GE I DL PF A+ + I G Sbjct: 272 EGCGEKIKDLRPFNAQSMAERILG 295 >gi|332074900|gb|EGI85372.1| signal recognition particle protein [Streptococcus pneumoniae GA41301] Length = 487 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 65 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 122 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QAQ D ++IDTAGRL + +LM +R +K L Sbjct: 123 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 176 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 177 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 236 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 237 FTGTGEKITDIETFHPDRMSSRILGMGD 264 >gi|15239909|ref|NP_199761.1| signal recognition particle 54 kDa protein 2 / SRP54 (SRP-54B) [Arabidopsis thaliana] gi|10177616|dbj|BAB10763.1| SRP54 (signal recognition particle 54 KDa) protein [Arabidopsis thaliana] gi|332008438|gb|AED95821.1| Signal recognition particle SRP54 subunit protein [Arabidopsis thaliana] Length = 497 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 89/291 (30%), Positives = 143/291 (49%), Gaps = 21/291 (7%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQ-------KIVE-ELLTKRYAKDVSVQRVLY 86 II + L+D + E + L++SD+ + + KIV E L + K +++ ++ Sbjct: 22 IIDEKALNDCLNE-ITRALLQSDVSFPLVKEMQTNIKKIVNLEDLAAGHNKRRIIEQAIF 80 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG--VGKTTVIGKLSKKMSDAGLKVML 144 SEL KML P F +P V++ VG+ G + K ++ + + G K L Sbjct: 81 --SELC-KMLDPGKSAFAPK-KAKPSVVMFVGLQGEVLEKPQLVPSMLIIIRRKGYKPAL 136 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 DTFR+ A DQLK A ++ + S GSD +A E + + + D++I+DT+GR Sbjct: 137 VCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDRFKKENCDLIIVDTSGR 196 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 + L + ++ K P V+ V+D++ GQ A Q F +I+T Sbjct: 197 HKQQASLFEEMRQISEATK------PDLVIFVMDSSIGQTAFEQARAFKQTVAVGAVIIT 250 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 KMDG A+GGG + V K PV F+G GE +++ E F AK F + + G D Sbjct: 251 KMDGHAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLLGNGD 301 >gi|227510448|ref|ZP_03940497.1| signal recognition particle protein Ffh [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190100|gb|EEI70167.1| signal recognition particle protein Ffh [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 478 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 124/237 (52%), Gaps = 12/237 (5%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGL 140 Q+++ V E + K + + P N P VI++ G+ G GKTT +GKL+ K+ ++ Sbjct: 73 QQIVKIVDEELTKTMGQEAVPLNKS-EKIPTVIMMSGLQGAGKTTTVGKLALKLKNEQNA 131 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLI 198 + +L A D +R AAI+QL+ + D ++G+D +A ++A+ D +I Sbjct: 132 RPLLIADDVYRPAAIEQLQTVGQQ--VDVPVFQLGTDVDPVEIAKRGLEKAKEDHNDYVI 189 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 IDTAGRL + LM + + + + P +L V+DA TGQNA+ E F Sbjct: 190 IDTAGRLQIDEKLMDELSNIKKAVN------PDEILLVIDAMTGQNAVATAEGFDKTLDV 243 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TG+++TK+DG RGG + I P+ F+G GE + DL+ F ++ I G D Sbjct: 244 TGVVLTKLDGDTRGGAALSIRAVTGKPIKFVGQGEKMEDLDVFHPDRMASRILGMGD 300 >gi|163744758|ref|ZP_02152118.1| signal recognition particle protein, putative [Oceanibulbus indolifex HEL-45] gi|161381576|gb|EDQ05985.1| signal recognition particle protein, putative [Oceanibulbus indolifex HEL-45] Length = 499 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 85/269 (31%), Positives = 135/269 (50%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA+ V+ + K + V+ Q+V+ V + + L +P Sbjct: 38 LLEADVSLPVARDFVKAVQDKATGQAVTKSVTPGQQVVKIVHDALIDTLKGEGEPGALKI 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P IL+VG+ G GKTT KL+K++ + G +V++A+ D R AA++QL I + Sbjct: 98 DSPPAPILMVGLQGGGKTTTTAKLAKRLKERDGKRVLMASLDVNRPAAMEQLAILGVQIG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G +A A QA DV ++DTAGRL + LM + K +R D Sbjct: 158 VDTLPIVKGESPVQIAKRAKTQAGLGGYDVYMLDTAGRLSIDEELMQQV-KAVR-----D 211 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+D TGQ+A+ E F G TG+++T+MDG RGG + + P+ Sbjct: 212 VANPRETLLVVDGLTGQDAVHTAENFDERIGITGVVLTRMDGDGRGGAALSMRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ LE F + + I G D Sbjct: 272 KFVGLGEKMDALETFEPERIAGRILGMGD 300 >gi|281202878|gb|EFA77080.1| signal recognition particle receptor alpha subunit [Polysphondylium pallidum PN500] Length = 669 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 75/203 (36%), Positives = 112/203 (55%), Gaps = 19/203 (9%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 RP+ I+ GVNGVGK+T + K+ ++ G KVM+AA DTFRS AI+QLK A+R + + Sbjct: 460 RPYTIVFSGVNGVGKSTNLAKICYWLTAHGYKVMMAACDTFRSGAIEQLKTHAERLNVEV 519 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 G DAA++A EA A+A DV++IDT GR+ NN LM + K++ + + Sbjct: 520 FERGYGKDAASIAGEAIDYARATNHDVVLIDTTGRMQNNEPLMRALSKLV------NQNT 573 Query: 230 PHSVLQVLDATTGQNALRQVEMFHA----VAGTT--------GLIMTKMDG-TARGGGLI 276 VL V +A G + + Q+ F +A +T G+I+TK D + G I Sbjct: 574 IDLVLFVGEALVGNDGVDQLVKFDKSLSLLADSTQTKVRTIDGIILTKFDTIDDKVGAAI 633 Query: 277 PIVVTHKIPVYFLGVGEGINDLE 299 +V + P+ FLG G+ DL+ Sbjct: 634 SMVYSTGHPIIFLGTGQNYTDLK 656 >gi|326920725|ref|XP_003206619.1| PREDICTED: signal recognition particle 54 kDa protein-like [Meleagris gallopavo] Length = 474 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 78/259 (30%), Positives = 129/259 (49%), Gaps = 13/259 (5%) Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILV 116 I V +++E+ T DV+++ V +L ++ P K W + + ++I+ Sbjct: 23 INEEVLNAMLKEVCTALLEADVNIKLV----KQLRENLVDPGVKA--WTPTKGKQNIIMF 76 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VG+ G GKTT KL+ G K L DT+R+ A DQLK A + F S Sbjct: 77 VGLQGSGKTTTCSKLAYFYQRKGWKTCLICADTYRAGAFDQLKQNATKARIPFYGSYTEM 136 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D +A E ++ + + +++I+DT+GR L +M++V + P +++ V Sbjct: 137 DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD---NIVYV 190 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 +DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+G GE I+ Sbjct: 191 MDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHID 250 Query: 297 DLEPFVAKDFSAVITGCLD 315 D EPF + F + + G D Sbjct: 251 DFEPFKTQPFISKLLGMGD 269 >gi|256847356|ref|ZP_05552802.1| signal recognition particle protein [Lactobacillus coleohominis 101-4-CHN] gi|256716020|gb|EEU30995.1| signal recognition particle protein [Lactobacillus coleohominis 101-4-CHN] Length = 480 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 86/282 (30%), Positives = 145/282 (51%), Gaps = 20/282 (7%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML 96 +RE + ++ L+ +D+ V + V+++ TK +V Q+++ V++ + +++ Sbjct: 28 LRETMREIRLALLEADVNFTVVKDFVKKVRTKATGAEVLKGLNPAQQIVKIVNDELTELM 87 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAI 155 + N H P VI++VG+ G GKTT GKL+ ++ + + + A D +R AAI Sbjct: 88 GSEAVALNK-APHIPTVIMMVGLQGAGKTTTAGKLAYRLKNEDHARPLFIAADVYRPAAI 146 Query: 156 DQLKIWADRTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 QL+ AD S D E G+D + E A+A D +IIDTAGRL + LM Sbjct: 147 TQLQQVAD--SIDVPVFEKGTDVDPVEIVREGLAAAKANHNDYVIIDTAGRLQIDEQLMD 204 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + + + + P+ +L V+DA TGQNA+ + F TG+++TK+DG RGG Sbjct: 205 ELANIKELAQ------PNEILLVVDAMTGQNAVATAQGFDDKLDVTGVVLTKLDGDTRGG 258 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+G GE + +L+ F ++ I G D Sbjct: 259 AAMSIRAVTGKPIKFVGEGEKMENLDVFHPDRMASRILGMGD 300 >gi|325971130|ref|YP_004247321.1| signal recognition particle protein [Spirochaeta sp. Buddy] gi|324026368|gb|ADY13127.1| signal recognition particle protein [Spirochaeta sp. Buddy] Length = 444 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 88/292 (30%), Positives = 147/292 (50%), Gaps = 25/292 (8%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDV----SVQRVLYD 87 I+ + + D V EE++ L+ +D+ + V ++ + EE L ++ K V +++YD Sbjct: 22 ITEKNIQDAV-EEIKVALLDADVNLRVVRRFINGTMEEALGEKVLKAVDPGQQFVKIVYD 80 Query: 88 VSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143 +M+ L N VIL++G+ G GKTT KL+ ++ G + M Sbjct: 81 ------RMVALLGDEENQKLLLKGPDTTSVILMMGLQGSGKTTTSAKLAARLKREGRRPM 134 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 L A D R AAI QL++ + + D + +A A QA+ + D+LI+DT+G Sbjct: 135 LVAADLVRPAAILQLQVLGESVGVPVFSIQGEKDPSKVAKAALAQAKKDQRDILIVDTSG 194 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 R+H + LM I ++ +K P L V D+ TGQNA+ + F G +G+++ Sbjct: 195 RMHLDQTLMDEIQRVRDAIK------PDETLFVADSMTGQNAVAIAQEFEQKVGISGVVL 248 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +K D RGG + + P+ F+GVGE ++DLEPF + ++ I G D Sbjct: 249 SKFDSDTRGGAALSLRSVVGKPIKFIGVGEKMDDLEPFYPERIASRILGMGD 300 >gi|57167721|ref|ZP_00366861.1| signal recognition particle protein [Campylobacter coli RM2228] gi|305433226|ref|ZP_07402382.1| signal recognition particle protein [Campylobacter coli JV20] gi|57020843|gb|EAL57507.1| signal recognition particle protein [Campylobacter coli RM2228] gi|304443927|gb|EFM36584.1| signal recognition particle protein [Campylobacter coli JV20] Length = 445 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 72/202 (35%), Positives = 108/202 (53%), Gaps = 6/202 (2%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P V+L+VG+ G GKTT KL+ + KV++AA D R AA++QLK + D Sbjct: 95 PTVVLMVGLQGGGKTTSTVKLANYLKLRNKKVLIAACDLQRLAAVEQLKQLCEANELDLF 154 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 E D +A +A ++A+ DVL++DTAGRL + LM + + VL P Sbjct: 155 YIENEKDPIKVAQQALEKAKNSMADVLLVDTAGRLAIDEALMNELKAVKNVLN------P 208 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 + V DA +GQ+ ++ F+ + G TG+I++K D +GG + I IP+ F+G Sbjct: 209 DEIFYVADAMSGQDGVKTASSFNELLGITGVILSKFDADTKGGIALGITKQIGIPLRFVG 268 Query: 291 VGEGINDLEPFVAKDFSAVITG 312 VGE I DLE F+ + I G Sbjct: 269 VGEKIADLEIFIPERIVNRIIG 290 >gi|229541116|ref|ZP_04430176.1| signal recognition particle protein [Bacillus coagulans 36D1] gi|229325536|gb|EEN91211.1| signal recognition particle protein [Bacillus coagulans 36D1] Length = 447 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 77/209 (36%), Positives = 113/209 (54%), Gaps = 13/209 (6%) Query: 111 PHVILVVGVNGVGKTTVIGKLS----KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P VI++VG+ G GKTT GKL+ KK + L L A D +R AAI QL+ + Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRTPL---LVAADIYRPAAIKQLETLGKQLG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 +A +A ++A+ + D +IIDTAGRLH +S LM + K I+ L Sbjct: 158 MPVFSLGDKISPVEIARQAIEKAKEEHHDTVIIDTAGRLHIDSELMNEL-KEIKELAH-- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P + V+DA TGQ+A+ + F+ G TG+I+TK+DG RGG + I + P+ Sbjct: 215 ---PDEIFLVVDAMTGQDAVNVAQSFNDQLGITGVILTKLDGDTRGGAALSIRAVTEKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ LEPF + ++ I G D Sbjct: 272 KFAGMGEKMDALEPFHPERMASRILGMGD 300 >gi|166154246|ref|YP_001654364.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia trachomatis 434/Bu] gi|166155121|ref|YP_001653376.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335495|ref|ZP_07223739.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia trachomatis L2tet1] gi|165930234|emb|CAP03719.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia trachomatis 434/Bu] gi|165931109|emb|CAP06673.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 448 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 111/204 (54%), Gaps = 9/204 (4%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P VIL+ G+ G GKTT KL+ KV++A+ D R +A++QL+ +T AD Sbjct: 99 PAVILLCGLQGAGKTTTCAKLADYFLREKKAKKVLVASCDLKRFSAVEQLEGLVKQTGAD 158 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 F E G+D +A EA + A+++ D++++DTAGRLH + LM + + RV Sbjct: 159 FFRRE-GNDPVDMAAEAVQHAKSQGYDLVLVDTAGRLHVDDALMDELVAIARV------T 211 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 +P L V++ GQ+A+ + F G TG++++ DG AR G ++ + P+ F Sbjct: 212 SPCETLFVMNLAMGQDAVVTAKAFDERLGLTGVVVSMADGDARAGAVLSVKSLLNKPIKF 271 Query: 289 LGVGEGINDLEPFVAKDFSAVITG 312 G GE I DL PF A+ + I G Sbjct: 272 EGCGEKIKDLRPFNAQSMAERILG 295 >gi|195127379|ref|XP_002008146.1| GI13333 [Drosophila mojavensis] gi|193919755|gb|EDW18622.1| GI13333 [Drosophila mojavensis] Length = 508 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 115/226 (50%), Gaps = 8/226 (3%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 ELI K++ P KP+ + +VI+ VG+ G GKTT KL+ K L DT Sbjct: 82 ELI-KLVDPGVKPYQ-PVKGKANVIMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+ A DQ+K A + F S D +A E + + +++I+DT+GR Sbjct: 140 FRAGAYDQIKQNATKARIPFYGSYTEIDPVVIAQEGVDMFKREGFEMIIVDTSGRHKQEE 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 L +M+ V ++P +++ V+DAT GQ Q + F +I+TK+DG Sbjct: 200 SLFE---EMLAVANAVNPD---NIIFVMDATIGQACEAQAKAFKEKVDIGSVIITKLDGH 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 A+GGG + V + P+ F+G GE I+DLEPF K F + + G D Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 299 >gi|312115616|ref|YP_004013212.1| signal recognition particle protein [Rhodomicrobium vannielii ATCC 17100] gi|311220745|gb|ADP72113.1| signal recognition particle protein [Rhodomicrobium vannielii ATCC 17100] Length = 504 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 157/306 (51%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRR--LDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75 F S S +L GI D ++ R D V E + ++ LI +D+ + V + + + K Sbjct: 2 FDSLSDRL-SGIFDKLTRRGALTDSDVSEAMREVRRALIEADVALDVVKSFTDRVKEKAV 60 Query: 76 AKDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++V SV Q V+ V + + + L ++P + S P I++VG+ G GKTT K Sbjct: 61 GQEVVRSVTPGQMVVKIVHDELVRTLGAEAEPIDLQ-SVPPVPIMMVGLQGSGKTTTTAK 119 Query: 131 LSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 ++K++++ KV++A+ DT R AA +QL++ +T D + G +A A + A Sbjct: 120 IAKRLTERDKRKVLMASLDTRRPAAQEQLEVLGKQTGVDTLPIIKGQTPQQIATRAIQAA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DV+I+DTAGRLH + LM + +R D PH L V D+ TGQ+A+ Sbjct: 180 KLGGYDVVILDTAGRLHIDDELMRET-EQVR-----DIAQPHETLLVADSLTGQDAVNLA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 F G TG+++T++DG RGG + + P+ LG GE ++ LE F + + Sbjct: 234 RTFDQRIGITGIVLTRIDGDGRGGAALSMRAVTGKPIKLLGTGEKLDGLEDFHPERVAGR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|91215952|ref|ZP_01252921.1| signal recognition particle protein [Psychroflexus torquis ATCC 700755] gi|91185929|gb|EAS72303.1| signal recognition particle protein [Psychroflexus torquis ATCC 700755] Length = 442 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 72/211 (34%), Positives = 111/211 (52%), Gaps = 7/211 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 D S P VIL+ G+ G GKTT GKL+ + S + +L A D +R AAIDQL + D+ Sbjct: 94 DLSGNPSVILMSGLQGSGKTTFSGKLANYLKSKKSKQPLLVACDVYRPAAIDQLHVVGDQ 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + ++ + +A A A+ +V+I+DTAGRL + ++M I + + +K Sbjct: 154 IGVEVFSNKEEKNPVLIAEAAIAHAKQNGHNVVILDTAGRLAVDQVMMNEISDIYKAVK- 212 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P L V+DA TGQ+A+ + F+ V G+I+TK+DG RGG I I Sbjct: 213 -----PQETLFVVDAMTGQDAVNTAKTFNDVLDFDGVILTKLDGDTRGGAAISIKSVVNK 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE ++ ++ F + I G D Sbjct: 268 PIKFIGTGEKMDAIDVFYPSRMADRILGMGD 298 >gi|116492613|ref|YP_804348.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pediococcus pentosaceus ATCC 25745] gi|116102763|gb|ABJ67906.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pediococcus pentosaceus ATCC 25745] Length = 476 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 99/318 (31%), Positives = 158/318 (49%), Gaps = 26/318 (8%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A E L+ +L K F T+L+ K +T+ L D +RE + L+ +D+ V ++ Sbjct: 1 MAFEGLT--ERLQKTF--TNLRKKGKVTEA----DLRDTMRE-IRLALLEADVNFKVVKQ 51 Query: 66 IVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 V+ + + D+ Q+++ V++ + KM+ P N P +I++ G+ Sbjct: 52 FVKTVRDQAIGSDILDGLNPAQQIVKLVNDELIKMMGTEDAPLNKS-PKIPTIIMMSGLQ 110 Query: 121 GVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 G GKTT GKL+ K+ ++ + +L A D +R AAIDQL + D + G+D Sbjct: 111 GAGKTTTTGKLALKLKNEQKARPLLIAADVYRPAAIDQLVQVGQQI--DVPVYQEGTDVN 168 Query: 180 A--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 + +QA K D + IDTAGRL + LM + I+ L P +L V+ Sbjct: 169 PVDIVRHGLEQAAENKNDYVFIDTAGRLQIDEKLMQELAD-IKALAH-----PDEILLVV 222 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA TGQNA+ E F+ TG+I+TK+DG RGG + I P+ F+G GE + D Sbjct: 223 DAMTGQNAVNTAEGFNEKLDITGVILTKLDGDTRGGAALSIRSVTGKPIKFVGQGEKMED 282 Query: 298 LEPFVAKDFSAVITGCLD 315 L+ F ++ I G D Sbjct: 283 LDVFHPDRMASRILGMGD 300 >gi|306827321|ref|ZP_07460608.1| signal recognition particle protein [Streptococcus pyogenes ATCC 10782] gi|304430468|gb|EFM33490.1| signal recognition particle protein [Streptococcus pyogenes ATCC 10782] Length = 520 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 89/308 (28%), Positives = 159/308 (51%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L++ I ++L + V +E+ L+ +D+ + V + ++ + + Sbjct: 3 FESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130 ++ Q++L V+E + +L S+ D S + P +I++VG+ G GKTT GK Sbjct: 63 HEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTTFAGK 120 Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187 L+ K+ + + ++ A D +R AAIDQLK + + ++G+D +A + + + Sbjct: 121 LANKLIKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVRKGLE 178 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 QA+ + D ++IDTAGRL + LM + +R +K L P+ +L V+D+ GQ A Sbjct: 179 QARENRNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQEAAN 232 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 F+ TG+++TK+DG RGG + + P+ F G+GE I D+E F S Sbjct: 233 VAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRMS 292 Query: 308 AVITGCLD 315 + I G D Sbjct: 293 SRILGMGD 300 >gi|255348387|ref|ZP_05380394.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia trachomatis 70] gi|255502928|ref|ZP_05381318.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia trachomatis 70s] Length = 448 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 111/204 (54%), Gaps = 9/204 (4%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P VIL+ G+ G GKTT KL+ KV++A+ D R +A++QL+ +T AD Sbjct: 99 PAVILLCGLQGAGKTTTCAKLTDYFLREKKAKKVLVASCDLKRFSAVEQLEGLVKQTGAD 158 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 F E G+D +A EA + A+++ D++++DTAGRLH + LM + + RV Sbjct: 159 FFRRE-GNDPVDMAAEAVQHAKSQGYDLVLVDTAGRLHVDDALMDELVAVARVT------ 211 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 +P L V++ GQ+A+ + F G TG++++ DG AR G ++ + P+ F Sbjct: 212 SPCETLFVMNLAMGQDAVVTAKAFDERLGLTGVVVSMADGDARAGAVLSVRSLLNKPIKF 271 Query: 289 LGVGEGINDLEPFVAKDFSAVITG 312 G GE I DL PF A+ + I G Sbjct: 272 EGCGEKIKDLRPFNAQSMAERILG 295 >gi|163752849|ref|ZP_02159973.1| signal recognition particle protein [Kordia algicida OT-1] gi|161326581|gb|EDP97906.1| signal recognition particle protein [Kordia algicida OT-1] Length = 443 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 110/211 (52%), Gaps = 7/211 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADR 164 + S +P +IL+ G+ G GKTT GKL+ + + K +L A D +R AAIDQL + D+ Sbjct: 94 NLSGKPSIILMSGLQGSGKTTFSGKLANYLKNKKTKKPLLVACDVYRPAAIDQLHVVGDQ 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 D + +D A+A A+ +V+IIDTAGRL + +M I + + ++ Sbjct: 154 IKVDVYSDKGNNDPVAIAQAGIAHAKQNGHNVVIIDTAGRLAVDEAMMTEIANIHKAIE- 212 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P L V+D+ TGQ+A+ + F+ + G+I+TK+DG RGG I I Sbjct: 213 -----PQETLFVVDSMTGQDAVNTAKAFNDILNFDGVILTKLDGDTRGGAAISIKSVVNK 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + ++ F + I G D Sbjct: 268 PIKFIGTGEKMEAIDVFYPSRMADRILGMGD 298 >gi|114777431|ref|ZP_01452428.1| Signal recognition particle GTPase [Mariprofundus ferrooxydans PV-1] gi|114552213|gb|EAU54715.1| Signal recognition particle GTPase [Mariprofundus ferrooxydans PV-1] Length = 451 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 145/288 (50%), Gaps = 21/288 (7%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD---VSELI 92 IS LDD +RE + L+ +D+ + V + ++ E+ + A V R L + +++ Sbjct: 22 ISESDLDDTLRE-MRLALLEADVALPVVRHLMSEV--REQALGAEVARSLQPGQVIIKIL 78 Query: 93 HKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 H +L + + + D S P V+L+ G+ G GKTT GKL+K ++ G KV L + D Sbjct: 79 HDVLADVLGGQRRDLDLSKIPSVVLLCGLQGAGKTTTAGKLAKLLASQGKKVALTSVDAT 138 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AA +QL++ A + ++ + AAA+A A +A VLI+DTAGR + Sbjct: 139 RPAAREQLQVLASQVDVPYIEGAG-ATAAAMAASAVNEAGRSGYHVLILDTAGRQVVDDA 197 Query: 211 LMAGI---GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 LM I + +R +RL VLDA TGQ AL E FHA TG I+TK D Sbjct: 198 LMEEIREVAEQVRASERL---------LVLDAMTGQTALSIAEQFHAAVTMTGCILTKTD 248 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + + + +PV ++G GE I+ E F + I G D Sbjct: 249 ADVRGGAALSVARSTGVPVRYIGTGEKIDAFEAFDPDRMAGRILGQGD 296 >gi|209521094|ref|ZP_03269824.1| signal recognition particle protein [Burkholderia sp. H160] gi|209498477|gb|EDZ98602.1| signal recognition particle protein [Burkholderia sp. H160] Length = 455 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 110/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +IL+ G+ G GKTT +GKL+K + + KV+ + D +R AAI QLK ++ ADF Sbjct: 104 PAIILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 SE +A A A+ DVL++DTAGRL + ++M I + LK Sbjct: 164 FPSEPNQKPVDIARAAVDWAKRHYHDVLLVDTAGRLGIDEVMMQEIAALHAELK------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F TG+++TK+DG +RGG + + PV F+ Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPVKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F ++ I G D Sbjct: 278 GVAEKLDGLEVFHPDRMASRILGMGD 303 >gi|300933894|ref|ZP_07149150.1| signal recognition particle protein [Corynebacterium resistens DSM 45100] Length = 527 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 88/282 (31%), Positives = 138/282 (48%), Gaps = 26/282 (9%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + V + + + + VS Q+V+ V+E + ++L ++ N Sbjct: 38 LLEADVSLPVVRGFINRVKERARGAAVSEALNPAQQVIKIVNEELQQILGGETRRLNL-A 96 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164 H P +I++ G+ G GKTT+ GKLSK + G ML A D R A+ QL+I +R Sbjct: 97 KHPPTIIMLAGLQGAGKTTLAGKLSKHLVKQGHTPMLVACDLQRPGAVQQLQIVGERAGV 156 Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 TS D E+G+ D +A ++A + D++IIDTAGRL + +LM Sbjct: 157 PVFAPEPGTSLDSHDHEMGTSKGDPIEVAQRGVEEAYRTQHDIVIIDTAGRLGIDEVLM- 215 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 K R ++ D P VL V+DA GQ+A+ E F TG+++TK+DG ARGG Sbjct: 216 ---KQARDIR--DAVEPDEVLFVIDAMIGQDAVTTAEAFRDGVDFTGVVLTKLDGDARGG 270 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ + GE + D + F + I G D Sbjct: 271 AALSIREVTGKPILYASTGEKLEDFDIFHPDRMANRILGMGD 312 >gi|294011041|ref|YP_003544501.1| signal recognition particle subunit SRP54 [Sphingobium japonicum UT26S] gi|292674371|dbj|BAI95889.1| signal recognition particle subunit SRP54 [Sphingobium japonicum UT26S] Length = 483 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 86/283 (30%), Positives = 146/283 (51%), Gaps = 16/283 (5%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIH 93 +D VR + ++ L+ +D+ + V ++ VE+ + DV SV Q V+ VS+ + Sbjct: 25 EDDVRAAMREVRIALLEADVALPVVRQFVEQATERAVGSDVLRSVTPGQMVVKIVSDTLT 84 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRS 152 + L + D + P VI++VG+ G GKTT K+++++ + K V++A+ D R Sbjct: 85 ETLGAETSDLLIDVTP-PAVIMMVGLQGSGKTTSTAKIARRLKEKERKKVLMASLDVQRP 143 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AA +QL + +T + G +A A + A+ + DV+++DTAGRLH + LM Sbjct: 144 AAQEQLAVLGTQTDVATLPIVPGQQPVDIARRALQAAKLQGFDVVMLDTAGRLHVDQALM 203 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + + V P +L V+D+ TGQ+A+ F A TG+++T+MDG ARG Sbjct: 204 DEMKAVAEV------SNPAEILLVVDSLTGQDAVNVATSFTAQVPLTGVVLTRMDGDARG 257 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + + P+ F G GE ++ +EPF + I G D Sbjct: 258 GAALSMRAVTGRPIKFAGTGEKLDAIEPFHPARVAQRILGMGD 300 >gi|167748890|ref|ZP_02421017.1| hypothetical protein ANACAC_03664 [Anaerostipes caccae DSM 14662] gi|317470268|ref|ZP_07929662.1| signal recognition particle protein [Anaerostipes sp. 3_2_56FAA] gi|167651860|gb|EDR95989.1| hypothetical protein ANACAC_03664 [Anaerostipes caccae DSM 14662] gi|316902241|gb|EFV24161.1| signal recognition particle protein [Anaerostipes sp. 3_2_56FAA] Length = 446 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 84/304 (27%), Positives = 151/304 (49%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ ++ S RL + +E++ L+ +D+ V + ++ + + Sbjct: 3 FESLSEKLQNVFKNLRSKGRLTESDVKAAMKEVKRALLEADVNFKVVKTFIKAVQDRAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V E + ++ + + VIL+ G+ G GKTT K+ Sbjct: 63 QDVLNGLNPGQMVIKIVKEEMEALMGSTTTEIQLKPGNEITVILMAGLQGAGKTTTTAKI 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K G + +L A D +R AAI QL++ ++ + +A + + A Sbjct: 123 AGKYKQKGKRPLLVACDVYRPAAIKQLQVNGEKQGVPVFSMGDKMNPVDIAKASIEHAAK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +++I+DTAGRLH + +M ++I + + +D H ++L V+DA TGQ+A+ + Sbjct: 183 NGNNIVILDTAGRLHIDEDMMT---ELIAIKQAVDVH--QTIL-VVDAMTGQDAVNVAKD 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G G+I+TKMDG RGG + I P+ ++G+GE ++DL+ F ++ I Sbjct: 237 FNEKVGVDGVIITKMDGDTRGGAALSIRSVTGKPILYIGMGEKLDDLQQFYPDRMTSRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|315222974|ref|ZP_07864853.1| signal recognition particle protein [Streptococcus anginosus F0211] gi|315187924|gb|EFU21660.1| signal recognition particle protein [Streptococcus anginosus F0211] Length = 516 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + G + ++ A D +R AAIDQL + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEEGARPLMIAADIYRPAAIDQLTTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QA+A D ++IDTAGRL + LM +R +K L Sbjct: 159 PVFSLGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLM----NELRDVKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|19074175|ref|NP_584781.1| SIGNAL RECOGNITION PARTICLE 54kDa SUBUNIT (SRP54) [Encephalitozoon cuniculi GB-M1] gi|19068817|emb|CAD25285.1| SIGNAL RECOGNITION PARTICLE 54kDa SUBUNIT (SRP54) [Encephalitozoon cuniculi GB-M1] Length = 466 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 84/292 (28%), Positives = 149/292 (51%), Gaps = 16/292 (5%) Query: 32 ITDIISSRRLDDGVR---EELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRV 84 +++++SS D + E+ + LI S++ + +EL K + A + R+ Sbjct: 13 LSNLLSSPATDQHIETAIREICNSLILSNVNPRYVSDLRDELRAKLDPGKMAPGFNKARM 72 Query: 85 LYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143 + + V E + +L P ++ + + R V++ VG+ G GKTT I K + G KV Sbjct: 73 VQNAVYERLVDLLDPRTESYKIE-KGRTSVVVFVGLQGSGKTTSICKYANFYKKKGYKVG 131 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 + DTFR+ A DQ++ A + F S +D +A ++ + ++ +++++DT+G Sbjct: 132 IVCADTFRAGAFDQVRQNALKIKVPFFGSS-EADPVKVASAGVERFRKERFELILVDTSG 190 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 R + L + +IR + +P S++ V+DA GQ+A Q F +I+ Sbjct: 191 RHTQETELFTEMKDIIREI------SPSSIVFVMDAGIGQSAEDQAMGFKRAVDVGSIIL 244 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TK+DGT + GG I V K P+ F+G GEG++DLE F A+ F + + G D Sbjct: 245 TKIDGTTKAGGAISSVAATKCPIEFVGTGEGMDDLEAFDARRFVSRMLGMGD 296 >gi|297571146|ref|YP_003696920.1| signal recognition particle protein [Arcanobacterium haemolyticum DSM 20595] gi|296931493|gb|ADH92301.1| signal recognition particle protein [Arcanobacterium haemolyticum DSM 20595] Length = 513 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 78/240 (32%), Positives = 125/240 (52%), Gaps = 12/240 (5%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 Q+V+ V++ + +L ++ NW P VI++ G+ G GKTT+ GKL + + + G + Sbjct: 72 QQVVKIVNDELISVLGGEARDINWAADGEPTVIMLAGLQGAGKTTLAGKLGRWLRENGKR 131 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLI 198 +L A D R A+ QL + A + D E G+ D +A + A++ DV++ Sbjct: 132 PLLVASDLQRPNAVQQLTVVAGQAGVDVWAPEPGNGIGDPVQVAKSGVEHARSAGFDVVV 191 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +DTAGRL + LM + R ++ + PH VL VLDA GQ+A+ F G Sbjct: 192 VDTAGRLGIDEELM----EQARNIR--NAVNPHEVLFVLDAMIGQDAVNTSLAFRDGVGF 245 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 TG++++K+DG ARGG + + PV F GE ++ E F A ++ I LD G+ Sbjct: 246 TGVVLSKLDGDARGGAALSVRGVTGQPVLFASTGEKLDAFERFHADRMASRI---LDMGD 302 >gi|257461314|ref|ZP_05626411.1| signal recognition particle protein [Campylobacter gracilis RM3268] gi|257441342|gb|EEV16488.1| signal recognition particle protein [Campylobacter gracilis RM3268] Length = 446 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 70/205 (34%), Positives = 109/205 (53%), Gaps = 6/205 (2%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P V L+ G+ G GK+T KL+ + KV++AA D R AA++QL+ + Sbjct: 93 STPPTVALMTGLQGSGKSTSTIKLANYLKLRKKKVLVAACDLQRLAAVEQLRQLCEANEI 152 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + E SD +A +A +A++ DVL++DTAGRL + LMA + +M + L Sbjct: 153 ELFFIEGESDPLKVAQKALSKAKSGLYDVLLVDTAGRLAIDEALMAQLAEMKKALN---- 208 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 PH + V DA +GQ+ ++ F + G TG+I++K D +GG + I IP+ Sbjct: 209 --PHEIFYVADAMSGQDGIKTAAKFDEILGLTGVILSKFDADTKGGVALGIAQQLGIPLR 266 Query: 288 FLGVGEGINDLEPFVAKDFSAVITG 312 F+G GE + DLE F+ + I G Sbjct: 267 FIGTGEKVADLEGFIPDRITGRIMG 291 >gi|86129464|ref|NP_001034366.1| signal recognition particle receptor subunit alpha [Gallus gallus] gi|60099127|emb|CAH65394.1| hypothetical protein RCJMB04_28a6 [Gallus gallus] Length = 644 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 89/302 (29%), Positives = 148/302 (49%), Gaps = 41/302 (13%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96 +R+ D V E+++D LI ++ +A ++ E + K K + + V V + + + L Sbjct: 340 TRQNMDPVLEKMKDHLIAKNVAAEIAVQLCESVAKKLEGKVMGTFTTVTSTVKQALQEAL 399 Query: 97 MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + + +P + RP+V+ GVNGVGK+T + K+S + + G V++AA Sbjct: 400 VQILQPQRRVDVLRDVMDAQRHRRPYVVTFCGVNGVGKSTNLAKISFWLIENGFSVLIAA 459 Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193 DTFR+ A++QL+ R +A G DAA +A EA A+ + Sbjct: 460 CDTFRAGAVEQLRTHTRRLNALHPPESHGGRTMVQLYEKGYGKDAAGIAMEAISYARNQG 519 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252 DV+++DTAGR+ +N+ LM + K+I V +AP VL V +A G A+ Q+ F Sbjct: 520 FDVVLVDTAGRMQDNAPLMTALAKLIAV------NAPDLVLFVGEALVGNEAVDQLVKFN 573 Query: 253 -----HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 H++A T G+++TK D + G I + P+ F+G G+ DL Sbjct: 574 KALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 633 Query: 303 AK 304 AK Sbjct: 634 AK 635 >gi|94312025|ref|YP_585235.1| signal recognition particle subunit FFH/SRP54 (srp54) [Cupriavidus metallidurans CH34] gi|93355877|gb|ABF09966.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Cupriavidus metallidurans CH34] Length = 463 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 77/206 (37%), Positives = 111/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT GKL+K + + K V+ + D +R AAI QLK +++ DF Sbjct: 107 PAVILMAGLQGAGKTTTSGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGVDF 166 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S+ +A A A+ DVLI+DTAGRL + +M I + LK Sbjct: 167 FPSQPDQKPVEIARAALDWARKHYHDVLIVDTAGRLGIDEAMMQEIAALHAELK------ 220 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG ARGG + + P+ F+ Sbjct: 221 PAETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDARGGAALSVRHITGRPIKFV 280 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE ++ LEPF A + I G D Sbjct: 281 GVGEKLDGLEPFYADRMAQRILGMGD 306 >gi|332886339|gb|EGK06583.1| signal recognition particle protein [Dysgonomonas mossii DSM 22836] Length = 439 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 100/311 (32%), Positives = 155/311 (49%), Gaps = 19/311 (6%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 ESLS +L + F LK + IT+I + L D VR L D +D+ A++ E Sbjct: 3 ESLS--NRLERSF--KILKGEGKITEINVAETLKD-VRRALLD----ADVNYKTAKQFTE 53 Query: 69 ELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKT 125 + K ++V + + + +++H L L D P VIL+ G+ G GKT Sbjct: 54 TVKEKAMGQNVLTAVKPEQLMVKIVHDELAALMGGTATDVHLKGNPAVILMSGLQGSGKT 113 Query: 126 TVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 T GKL+K + S G +L AGD +R AAI+QLKI ++ E + +A Sbjct: 114 TFSGKLAKMLKSKKGKNPLLVAGDVYRPAAIEQLKILGEQIEVPVYWEEGSKNPVQIAQN 173 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A K A+ D++I+DTAGRL + +M K I +K D P +L V+D+ TGQ+ Sbjct: 174 AIKHAKQNGNDLVIVDTAGRLAIDEEMM----KEITAIK--DAVKPDEILFVVDSMTGQD 227 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ + F+ G+++TK+DG RGG + I P+ F+G GE ++ L+ F + Sbjct: 228 AVNTAKEFNDRLNFDGVVLTKLDGDTRGGAALSIRSVVDKPIKFVGTGEKMDALDVFHPE 287 Query: 305 DFSAVITGCLD 315 + I G D Sbjct: 288 RMADRILGMGD 298 >gi|319944603|ref|ZP_08018871.1| signal recognition particle protein [Lautropia mirabilis ATCC 51599] gi|319742140|gb|EFV94559.1| signal recognition particle protein [Lautropia mirabilis ATCC 51599] Length = 578 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 76/206 (36%), Positives = 111/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +IL+ G+ G GKTT +GK+SK + + KV+ + D +R AAIDQLK A + DF Sbjct: 215 PAIILMAGLQGAGKTTTVGKISKWLRENRKKKVLTVSCDVYRPAAIDQLKTVAQQAGVDF 274 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S+ A +A A A+ DVLI+DTAGRL + +M IR+L D Sbjct: 275 FPSQPDQKPADIARAAVDWAKNHYHDVLIVDTAGRLGIDQAMM----DEIRLLH--DTLH 328 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG +RGG + + P+ F+ Sbjct: 329 PIETLFVVDAMQGQDAVNTAKAFNDTLPLTGVVLTKLDGDSRGGAALSVKAITGKPIKFV 388 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE + L+ F + I G D Sbjct: 389 GVGEKLTGLDVFHPDRMANRILGMGD 414 >gi|50748422|ref|XP_421238.1| PREDICTED: similar to Signal recognition particle 54 [Gallus gallus] gi|224051427|ref|XP_002200552.1| PREDICTED: signal recognition particle 54kDa [Taeniopygia guttata] Length = 504 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 107/206 (51%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + ++I+ VG+ G GKTT KL+ G K L DT+R+ A DQLK A + F Sbjct: 100 KQNIIMFVGLQGSGKTTTCSKLAYFYQRKGWKTCLICADTYRAGAFDQLKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E ++ + + +++I+DT+GR L +M++V + P Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D EPF + F + + G D Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299 >gi|258593820|emb|CBE70161.1| 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA, ffh family (fifty four homolog) [NC10 bacterium 'Dutch sediment'] Length = 447 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 97/313 (30%), Positives = 151/313 (48%), Gaps = 27/313 (8%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 +E LS + K +G + +E IT+ + RL L+ +D+ V + + Sbjct: 6 TERLSGVLKKLRGHGRLT---EENITEALREVRL----------ALLEADVNFKVVKGFI 52 Query: 68 EELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 E + + +DV Q+V+ V E + ++L P + S P I++VG++G Sbjct: 53 ERVRERAVGRDVLESLTPGQQVVKVVYEELVEVLGKTRAPLTYA-SDSPTTIMLVGLHGS 111 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT KL++ G +L A DT R AA +QL+ R V + GS A + Sbjct: 112 GKTTTSAKLARWFVSEGRSPLLVAADTVRPAAREQLQTLG-RALGVPVYAGPGS-ALQVC 169 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 EA K A+ + + +I+DT+GRLH + LM + + P L V DA TG Sbjct: 170 QEARKLAKERGQNPVILDTSGRLHIDEPLMQELVAIAAA------TGPTERLMVADAMTG 223 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 Q+A+ F+A TG I+TK+DG +RGG + I P+ F+GVGE + LEPF Sbjct: 224 QDAVNSAVRFNADLDLTGFILTKLDGDSRGGAALSIRSVTGKPIKFIGVGEKPDALEPFH 283 Query: 303 AKDFSAVITGCLD 315 + ++ I G D Sbjct: 284 PERLASRILGMGD 296 >gi|253681736|ref|ZP_04862533.1| signal recognition particle protein [Clostridium botulinum D str. 1873] gi|253561448|gb|EES90900.1| signal recognition particle protein [Clostridium botulinum D str. 1873] Length = 451 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 70/203 (34%), Positives = 112/203 (55%), Gaps = 6/203 (2%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 VI++VG+ G GKTT+ GKL+ ++ K +L A D +R AAI QL++ + Sbjct: 103 VIMLVGLQGAGKTTMAGKLALQLRKNNKKPLLVACDIYRPAAIKQLQVVGSQIDIPVFSM 162 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 + +A + + A+ K +V+IIDTAGRLH + LM + + +K P+ Sbjct: 163 GDKVNPVDIAKASIEHAKNNKNNVVIIDTAGRLHIDEALMDELENIKTSVK------PNE 216 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 +L V+D+ TGQ+A+ E F+ +G+I+TK+DG RGG + I P+ ++G+G Sbjct: 217 ILLVVDSMTGQDAVNVSETFNDKLDISGVILTKLDGDTRGGAALSIKAVTGKPIKYVGLG 276 Query: 293 EGINDLEPFVAKDFSAVITGCLD 315 E +NDLE F ++ I G D Sbjct: 277 EKMNDLEVFHPDRMASRILGMGD 299 >gi|218130040|ref|ZP_03458844.1| hypothetical protein BACEGG_01625 [Bacteroides eggerthii DSM 20697] gi|317476534|ref|ZP_07935781.1| signal recognition particle protein [Bacteroides eggerthii 1_2_48FAA] gi|217987760|gb|EEC54087.1| hypothetical protein BACEGG_01625 [Bacteroides eggerthii DSM 20697] gi|316907277|gb|EFV28984.1| signal recognition particle protein [Bacteroides eggerthii 1_2_48FAA] Length = 440 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 89/299 (29%), Positives = 153/299 (51%), Gaps = 25/299 (8%) Query: 8 SESLSWIRKLTKGFASTSLKLKEG-ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 SE L K+ KG EG IT+I + L D VR+ L D +D+ VA+ Sbjct: 6 SERLERSFKILKG---------EGKITEINVAETLKD-VRKALLD----ADVNYKVAKNF 51 Query: 67 VEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVG 123 + + K ++V + + + +++H L L + + +P VIL+ G+ G G Sbjct: 52 TDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQLMGGETAEINIDSKPAVILMSGLQGSG 111 Query: 124 KTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 KTT GKL++ + + K +L A D +R AAI+QL++ A++ + A+A Sbjct: 112 KTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIEQLRVLAEQIEVPMYSEPDSKNPVAIA 171 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 A ++A+AK D++I+DTAGRL + +M I + + P+ +L V+D+ TG Sbjct: 172 QNAIQEAKAKGYDLVIVDTAGRLAVDEEMMNEIAAIKAAIN------PNEILFVVDSMTG 225 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 Q+A+ + F+ G+++TK+DG RGG + I P+ F+G GE ++ ++ F Sbjct: 226 QDAVNTAKEFNDRLDFNGVVLTKLDGDTRGGAALSIRSVVNKPIKFVGTGEKLDAIDQF 284 >gi|225710178|gb|ACO10935.1| Signal recognition particle 54 kDa protein [Caligus rogercresseyi] Length = 509 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 82/278 (29%), Positives = 138/278 (49%), Gaps = 12/278 (4%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLT----KRYAKDVSVQRVLYDVSEL-IHKMLM 97 +G+ +EL L+ +D+ + + K+ E + + A+ ++ ++++ + L + K++ Sbjct: 29 NGMLKELCAALLEADVNIRLVAKLRENVRGVINFEEMAQGLNKRQIIKEAVYLELVKLVD 88 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P +PF R +VI+ VG+ GKTT KL+ G K L DTFR+ A DQ Sbjct: 89 PGVEPF-VPKKGRANVIMFVGLQDSGKTTTCTKLAWYYQKKGWKACLVCADTFRAGAYDQ 147 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 LK A + F S D +A E + + +++I+DT+GR + L + Sbjct: 148 LKQNATKARIPFYGSYTEPDPVVIANEGVNTFKEEGFEIIIVDTSGRHYQEDALFE---E 204 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 M+ V ++P +++ V+DA+ GQ Q F +I++K+D A+GGG + Sbjct: 205 MLAVSNAVNPD---NIIFVMDASIGQACEAQSRAFKEKVDVGSVIISKLDSHAKGGGALS 261 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 V K PV F+G GE I+D EPF K F + G D Sbjct: 262 AVAATKSPVVFIGTGEHIDDFEPFKTKPFVQKLLGMGD 299 >gi|327291942|ref|XP_003230679.1| PREDICTED: signal recognition particle 54 kDa protein-like, partial [Anolis carolinensis] Length = 425 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 107/206 (51%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + ++I+ VG+ G GKTT KL+ G K L DT+R+ A DQLK A + F Sbjct: 21 KQNIIMFVGLQGSGKTTSCSKLAYYYQRKGWKTCLICADTYRAGAFDQLKQNATKARIPF 80 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E ++ + + +++I+DT+GR L +M++V + P Sbjct: 81 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 136 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 137 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 194 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D EPF + F + + G D Sbjct: 195 GTGEHIDDFEPFKTQPFISKLLGMGD 220 >gi|306819255|ref|ZP_07452966.1| signal recognition particle protein [Mobiluncus mulieris ATCC 35239] gi|307700138|ref|ZP_07637184.1| signal recognition particle protein [Mobiluncus mulieris FB024-16] gi|304648037|gb|EFM45351.1| signal recognition particle protein [Mobiluncus mulieris ATCC 35239] gi|307614687|gb|EFN93910.1| signal recognition particle protein [Mobiluncus mulieris FB024-16] Length = 564 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 85/280 (30%), Positives = 137/280 (48%), Gaps = 18/280 (6%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ + V + ++ K Y S Q+++ +++ + ++L ++ Sbjct: 33 EIRRALLEADVALEVVKDFTAQVKEKAYGAARSEALNPAQQIVKIINDELVEILGGEARE 92 Query: 103 FNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 ++ P V ++VG+ G GKTT+ GKL K + K +L A D R A+ QL+I Sbjct: 93 LHFVKPGKGPTVFMLVGLQGAGKTTLAGKLGKWLGKQDKKTLLVAADLQRPNAVTQLQIV 152 Query: 162 ADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++ E G+ D +A A DV+I+DTAGRL + LMA Sbjct: 153 GEQAGVSVFAPEPGNGVGDPVDVARRGLALATGSGYDVMIVDTAGRLGVDEKLMA----Q 208 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 R ++ D P VL VLDA GQ+A+R F TG++++K+DG ARGG + + Sbjct: 209 ARAIR--DEVQPEEVLFVLDAMIGQDAVRTARAFQEGVDFTGVVLSKLDGDARGGAALSV 266 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 PV F GEG++D E F A ++ I LD G+ Sbjct: 267 RGVTGKPVLFASTGEGLDDFERFHADRMASRI---LDMGD 303 >gi|300702995|ref|YP_003744597.1| signal recognition particle (srp) component with 4.5S RNA (ffs) [Ralstonia solanacearum CFBP2957] gi|299070658|emb|CBJ41953.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Ralstonia solanacearum CFBP2957] Length = 478 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 111/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +IL+ G+ G GKTT +GKL+K + + K V+ + D +R AAI QLK +++ ADF Sbjct: 120 PAIILMAGLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 179 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S+ +A A A+ DVLI+DTAGRL + +M I + LK Sbjct: 180 FPSQPDQKPVDIAAAALDWAKKHYHDVLIVDTAGRLGIDEAMMQEIAALHAALK------ 233 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG ARGG + + P+ F+ Sbjct: 234 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDARGGAALSVRHITGKPIKFV 293 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LEPF + I G D Sbjct: 294 GVAEKLDGLEPFYPDRMAQRILGMGD 319 >gi|269977120|ref|ZP_06184094.1| signal recognition particle protein [Mobiluncus mulieris 28-1] gi|269934951|gb|EEZ91511.1| signal recognition particle protein [Mobiluncus mulieris 28-1] Length = 524 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 85/280 (30%), Positives = 137/280 (48%), Gaps = 18/280 (6%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ + V + ++ K Y S Q+++ +++ + ++L ++ Sbjct: 33 EIRRALLEADVALEVVKDFTAQVKEKAYGAARSEALNPAQQIVKIINDELVEILGGEARE 92 Query: 103 FNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 ++ P V ++VG+ G GKTT+ GKL K + K +L A D R A+ QL+I Sbjct: 93 LHFVKPGKGPTVFMLVGLQGAGKTTLAGKLGKWLGKQDKKTLLVAADLQRPNAVTQLQIV 152 Query: 162 ADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++ E G+ D +A A DV+I+DTAGRL + LMA Sbjct: 153 GEQAGVSVFAPEPGNGVGDPVDVARRGLALATGSGYDVMIVDTAGRLGVDEKLMA----Q 208 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 R ++ D P VL VLDA GQ+A+R F TG++++K+DG ARGG + + Sbjct: 209 ARAIR--DEVQPEEVLFVLDAMIGQDAVRTARAFQEGVDFTGVVLSKLDGDARGGAALSV 266 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 PV F GEG++D E F A ++ I LD G+ Sbjct: 267 RGVTGKPVLFASTGEGLDDFERFHADRMASRI---LDMGD 303 >gi|88607548|ref|YP_504956.1| signal recognition particle protein [Anaplasma phagocytophilum HZ] gi|88598611|gb|ABD44081.1| signal recognition particle protein [Anaplasma phagocytophilum HZ] Length = 449 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 92/292 (31%), Positives = 153/292 (52%), Gaps = 19/292 (6%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 LTKGF S++L+ G +I SS+ D V E++ L+ +D+ + V + +E + +K Sbjct: 5 LTKGF-SSALQRLSGKREI-SSKDFD-LVIEDITQALLDADVNLGVVDEFIENVKSKIVG 61 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130 DV Q V+ + E + ++L ++ D + P VI++VG+ GVGKTT K Sbjct: 62 GDVVKGVLPEQMVIKRIEECLIEVLG--NEKSALDLKGKIPAVIMMVGLQGVGKTTNTVK 119 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 ++ ++ ++A+ D +R AA +QLK+ AD D + +A A ++A+ Sbjct: 120 VALRLKKDSKNPLVASLDVYRPAAREQLKVLADGVGIDSLPIVEEQKPLDIAKRAMREAR 179 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH-APHSVLQVLDATTGQNALRQV 249 K DV+++DTAGRLH N MI LK + +P ++ V+D+ GQ+A+ V Sbjct: 180 LKGHDVVLLDTAGRLHINQ-------DMIDELKCVKKEVSPAEIVLVVDSLMGQDAVTMV 232 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 F+ G TG I T+ DG RGG ++ + + P+ F+ GE DL+ F Sbjct: 233 RKFNEELGITGTIFTRADGDPRGGAILSMKLVAGCPIKFMSTGEKPEDLDDF 284 >gi|322712148|gb|EFZ03721.1| signal sequence receptor alpha subunit [Metarhizium anisopliae ARSEF 23] Length = 655 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 91/283 (32%), Positives = 142/283 (50%), Gaps = 35/283 (12%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVS--ELIHKML 96 RL +GV +EL V V E + +K + A + S+ ++L S +L+ ++ Sbjct: 379 RLCEGVEKEL----------VGVKTGNFESISSKIQTAMESSLTKMLTPTSSLDLLREID 428 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 + P RP+VI +VGVNGVGK+T + K+ + KV++AAGDTFRS A++ Sbjct: 429 SITAPPATSLRKARPYVISIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVE 488 Query: 157 QLKIWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 QL + R + E G DAA +A +A A + DV++IDTAGR H Sbjct: 489 QLAVHV-RNLKELTAREGGQVELYQKGYGKDAATVAKDAVSHAAQEGFDVVLIDTAGRRH 547 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT----GLI 262 N+ LM+ + K + + P +L V +A G +++ Q F+A G+ G I Sbjct: 548 NDQRLMSSLEKFAKFAQ------PDKILMVGEALVGTDSVAQARNFNAAFGSVRTLDGFI 601 Query: 263 MTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 ++K D G L+ +V +PV F+GVG+ +DL F K Sbjct: 602 ISKCDTVGDMVGTLVSLVHATNVPVLFVGVGQHYSDLRNFSVK 644 >gi|253741984|gb|EES98841.1| SRP GTPase [Giardia intestinalis ATCC 50581] Length = 530 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 108/224 (48%), Gaps = 10/224 (4%) Query: 95 MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 ML P PF +R +VI+ VG+ G GKTT K G +V L DTFR+ A Sbjct: 88 MLSPDRPPFR-PVRNRANVIMFVGLQGAGKTTTCVKFGAYYKRKGWRVGLVCCDTFRTGA 146 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 DQLK F S D +A + K + +++I+DT+GR L Sbjct: 147 FDQLKQNCTAVKLPFYGSYSEKDPVQIAQDGVKHFLSLNFELIILDTSGRHRQEEALFTE 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + K+I + PH + VLD++ GQ A Q + F +I+TK+DG +RGGG Sbjct: 207 M-KLID-----NAVQPHDHVFVLDSSIGQAAYEQADAFSNAVEIGSVILTKLDGHSRGGG 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + V K P+ FLG GE I DLE F F +V+ G YG+ Sbjct: 261 ALAAVSATKAPIVFLGTGEKIEDLEFFDPSRFVSVMLG---YGD 301 >gi|298530728|ref|ZP_07018130.1| signal recognition particle protein [Desulfonatronospira thiodismutans ASO3-1] gi|298510102|gb|EFI34006.1| signal recognition particle protein [Desulfonatronospira thiodismutans ASO3-1] Length = 465 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 71/205 (34%), Positives = 108/205 (52%), Gaps = 6/205 (2%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VI++VG+ G GKTT GKL+ + L D +R AAIDQL A + Sbjct: 100 PVVIMMVGLQGSGKTTSAGKLALHLKGLKYSPYLVPADVYRPAAIDQLHKLAGDLNMPAY 159 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 S + + A ++A+ K +I DTAGRLH + LM +++ + ++ +P Sbjct: 160 PSTSSDNPVDICMRALEEARQKAYTAVIFDTAGRLHIDETLMQ---ELVSIKEKC---SP 213 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 H +L V DA TGQ+A+ + F+ + TG+++TKM+G ARGG + I P+ F+G Sbjct: 214 HEILFVADAMTGQDAVTVAQRFNDLLDITGVVLTKMEGDARGGAALSIKSITNKPIKFVG 273 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 GE + DLE F ++ I G D Sbjct: 274 TGEKLTDLEVFHPDRVASRILGMGD 298 >gi|167766678|ref|ZP_02438731.1| hypothetical protein CLOSS21_01184 [Clostridium sp. SS2/1] gi|317497507|ref|ZP_07955826.1| signal recognition particle protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167711615|gb|EDS22194.1| hypothetical protein CLOSS21_01184 [Clostridium sp. SS2/1] gi|291558377|emb|CBL37177.1| signal recognition particle protein [butyrate-producing bacterium SSC/2] gi|316895190|gb|EFV17353.1| signal recognition particle protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 446 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 85/304 (27%), Positives = 151/304 (49%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVR---EELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ ++ S RL +D V+ E++ L+ +D+ V + ++ + + Sbjct: 3 FESLSEKLQGVFKNLRSKGRLTEDDVKAAMREVKRALLEADVNFKVVKTFIKSVQERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V E + ++ + +IL+ G+ G GKTT KL Sbjct: 63 QDVLNGLNPGQMVIKIVKEEMEALMGSTMTEIQLRPGNEITIILMAGLQGAGKTTTCAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + G + +L A D +R AAI QL++ ++ + +A + + AQ Sbjct: 123 AGQYKKKGKRPLLVACDVYRPAAIKQLQVNGEKVGVPVFTMGDKQNPVDIAKASVEHAQK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +++I+DTAGRLH + +M +++ + + +D S+L V+DA TGQ+A+ + Sbjct: 183 NGNNIVILDTAGRLHIDENMMT---ELVEIKENVDVF--QSIL-VVDAMTGQDAVNVAKE 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G G+I+TKMDG RGG + I P+ ++G+GE + DL+ F ++ I Sbjct: 237 FNEKVGVDGIIITKMDGDTRGGAALSIRSVTGKPILYVGMGEKLEDLQQFYPDRMTSRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|88706921|ref|ZP_01104620.1| signal recognition particle protein [Congregibacter litoralis KT71] gi|88698843|gb|EAQ95963.1| signal recognition particle protein [Congregibacter litoralis KT71] Length = 457 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 87/305 (28%), Positives = 146/305 (47%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + + RL + G E+ L+ +D+ + V + V + + Sbjct: 2 FQNLSERLTQSLRSVTGKARLSEDNIQGTLREVRMALLEADVALPVVTQFVNSVKERALG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V Q L V + ++ ++ + + P VIL+ G+ G GKTT KL Sbjct: 62 QEVMSSLSPGQAFLKIVQAELESVMGAANEGLDLS-TQPPAVILLAGLQGAGKTTSAAKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 ++ + + K V + + D +R AAI QL+ A DF S + +A A + A+ Sbjct: 121 ARLLKERDKKKVTVVSADVYRPAAIKQLETLAAEVGVDFFPSSVDQKPVDIALAAREHAR 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + DVLI+DTAGRL ++ +MA I + + + P L V+DA TGQ+A + Sbjct: 181 IQFSDVLIVDTAGRLAVDADMMAEIAALEKAV------TPVETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F TG+++TK+D +RGG + + P+ FLGVGE L+PF ++ I Sbjct: 235 AFGEALPLTGVVLTKVDADSRGGAALSVRQITGKPIKFLGVGEKTEALDPFHPDRLASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|256420373|ref|YP_003121026.1| signal recognition particle protein [Chitinophaga pinensis DSM 2588] gi|256035281|gb|ACU58825.1| signal recognition particle protein [Chitinophaga pinensis DSM 2588] Length = 441 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 69/212 (32%), Positives = 115/212 (54%), Gaps = 7/212 (3%) Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D P +IL+ G+ G GKTT GKL+ + + G K +L A D +R AAIDQLK+ + Sbjct: 93 LDVKSNPSIILIAGLQGSGKTTFSGKLANFLKTKKGKKPLLVAADIYRPAAIDQLKVLGE 152 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + + DA +A A A+ +++IIDTAGRL + ++M + + +K Sbjct: 153 QIGVEVYSEPENKDAVKIAQNAIAHAKQNNNNIIIIDTAGRLAVDEVMMTEVANVKAAVK 212 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 P+ +L V+D+ TGQ+A+ + F+ +G+++TK+DG RGG + I T + Sbjct: 213 ------PNEILFVVDSMTGQDAVNTAKAFNERLDFSGVVLTKLDGDTRGGAALTIKYTVE 266 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+ +GE ++ L+ F + + I G D Sbjct: 267 KPIKFVSMGEKLDTLDVFYPERMAQRILGMGD 298 >gi|331269654|ref|YP_004396146.1| signal recognition particle protein [Clostridium botulinum BKT015925] gi|329126204|gb|AEB76149.1| signal recognition particle protein [Clostridium botulinum BKT015925] Length = 451 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 69/203 (33%), Positives = 113/203 (55%), Gaps = 6/203 (2%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 VI++VG+ G GKTT+ GKL+ ++ K +L A D +R AAI QL++ ++ Sbjct: 103 VIMLVGLQGAGKTTMAGKLALQLRKNNKKPLLVACDIYRPAAIKQLQVVGNQIDIPVFSM 162 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 + +A + + A+ K +V+IIDTAGRLH + LM + + ++ P+ Sbjct: 163 GDKVNPVDIAKASIEHAKNNKNNVVIIDTAGRLHIDEALMDELENIKTSVE------PNE 216 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 +L V+D+ TGQ+A+ E F+ +G+I+TK+DG RGG + I P+ ++G+G Sbjct: 217 ILLVVDSMTGQDAVNVSETFNNKLDISGVILTKLDGDTRGGAALSIKAVTGKPIKYVGLG 276 Query: 293 EGINDLEPFVAKDFSAVITGCLD 315 E +NDLE F ++ I G D Sbjct: 277 EKMNDLEVFHPDRMASRILGMGD 299 >gi|327190186|gb|EGE57291.1| signal recognition particle GTP-binding protein [Rhizobium etli CNPAF512] Length = 571 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 113/206 (54%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT KL+ ++S KV++A+ DT R AA +QL+ + S D Sbjct: 146 PVVVMMVGLQGSGKTTTTAKLAHRLSTREKKKVLMASLDTRRPAAQEQLRQLGAQASIDT 205 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ DV+I+DTAGR H + LM +M + KR +PH Sbjct: 206 LPVISGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMV---EMADIKKRSNPH- 261 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +L V D+ TGQ+A+ F G TGL++T+MDG RGG + + P+ + Sbjct: 262 --EILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 319 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE +++LE F + + I G D Sbjct: 320 GVGEKMSELEEFHPRRIADRILGMGD 345 >gi|294791388|ref|ZP_06756545.1| signal recognition particle protein [Scardovia inopinata F0304] gi|294457859|gb|EFG26213.1| signal recognition particle protein [Scardovia inopinata F0304] Length = 554 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 91/323 (28%), Positives = 155/323 (47%), Gaps = 35/323 (10%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F+S + +L E ++ S +L DG E+ L+ +D+ + V + + + Sbjct: 4 FSSLTDRLTEAFKNLRSKGKLSESDIDGTIREIRRALLDADVSLTVVKSFTARVRQRALG 63 Query: 77 KDVS-----VQRVLYDVS-ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++VS Q+V+ V+ EL + + +P N+ + P +I++ G+ G GKTT+ GK Sbjct: 64 EEVSQALNPAQQVVSIVNDELTDILGAGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 122 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175 L + D G +L A D R A+ QL++ +R E G Sbjct: 123 LGYWLKDLGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEPGVQSATSDVVSPGLTA 182 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 D +A ++ + A++K D +IIDTAGRL + LM + R ++ D P+ +L Sbjct: 183 GDPVKVARDSIEVAKSKLYDTVIIDTAGRLGVDQELM----QQARNIR--DAVHPNEILF 236 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+DA GQ+A+ + F TG++++K+DG ARGG + + P+ F GEG+ Sbjct: 237 VIDAMIGQDAVATAKAFDQGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFSSTGEGL 296 Query: 296 NDLEPFVAKDFSAVITGCLDYGE 318 D E F ++ I LD G+ Sbjct: 297 KDFEVFHPDRMASRI---LDMGD 316 >gi|260654905|ref|ZP_05860393.1| signal recognition particle protein [Jonquetella anthropi E3_33 E1] gi|260630407|gb|EEX48601.1| signal recognition particle protein [Jonquetella anthropi E3_33 E1] Length = 453 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 100/300 (33%), Positives = 156/300 (52%), Gaps = 25/300 (8%) Query: 30 EGITDIISSR------RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV---- 79 EGI D + +R + D +RE + L+ +D+ V + +VE + + ++V Sbjct: 10 EGIFDSLRNRGKLSENDVADSLRE-VRRALLEADVNYKVVRDLVERIRVRAVGRNVLESI 68 Query: 80 -SVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMS 136 Q+V+ V EL+ LM K N S +P +L+VG+ G GKTT KL++++ Sbjct: 69 TPAQQVISVVFEELVA--LMGGGKS-NLKISPKPPTTVLMVGLQGSGKTTSSAKLARRIR 125 Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALAYEAFKQAQAKKVD 195 + K +L A D R AA+ QL+I A F+ E +D L ++ K A D Sbjct: 126 PSH-KPLLVACDLRRPAAVKQLEILAKSAEVGFLGPENDKTDLFDLVRQSRKYAADHLQD 184 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 ++I DTAGRL + LM + ++ ++ P +L V+D+ +GQ AL E FHA Sbjct: 185 LIIYDTAGRLAIDEELMTELDRLKSTVQ------PDEILLVVDSMSGQEALNVAETFHAR 238 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G TG+++TK+DG ARGG + ++ +PV F GVGEGI+ E F A+ + I G D Sbjct: 239 LGLTGIVLTKLDGDARGGAALAVLAATGVPVKFAGVGEGIDAFEEFDARRMAERIMGMGD 298 >gi|38234110|ref|NP_939877.1| signal recognition particle protein [Corynebacterium diphtheriae NCTC 13129] gi|38200372|emb|CAE50059.1| signal recognition particle protein [Corynebacterium diphtheriae] Length = 538 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 95/319 (29%), Positives = 154/319 (48%), Gaps = 30/319 (9%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L ++ + S ++ + V E+ L+ +D+ + V + + + + Sbjct: 2 FESLSDRLGNALSGLRSKGKVTEADINTVAREIRLALLEADVSLPVVRGFISRIKDRALG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS ++V+ V E + +L ++ N + P VI++ G+ G GKTT+ GKL Sbjct: 62 VEVSKALNPAEQVIKIVDEELTGILGGETRRLNL-AKNPPTVIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR-----------TSADFVCSEIGS---D 177 +K + + G ML A D R A+ QL I +R TS D E+G+ D Sbjct: 121 AKHLVEQGHTPMLVACDLQRPGAVQQLTIVGERAGVPTFAPDPGTSIDSSDHEMGTSHGD 180 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 A+A + +A+ + D++I+DTAGRL + LM + IR D P VL V+ Sbjct: 181 PVAVAQQGIAEAKRTQHDIVIVDTAGRLGIDEALMT-QARNIR-----DAINPDEVLFVI 234 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA GQ+A+ E F TG+++TK+DG ARGG + I P+ F GE + D Sbjct: 235 DAMIGQDAVNTAEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPIMFASTGEKLED 294 Query: 298 LEPFVAKDFSAVITGCLDY 316 + F + S+ I G D Sbjct: 295 FDIFHPERMSSRILGMGDM 313 >gi|13473694|ref|NP_105262.1| signal recognition particle protein [Mesorhizobium loti MAFF303099] gi|14024445|dbj|BAB51048.1| signal recognition particle protein [Mesorhizobium loti MAFF303099] Length = 532 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 114/206 (55%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT K++K++++ KV++A+ DT R AA +QL+ ++T Sbjct: 100 PVVIMMVGLQGSGKTTTSAKIAKRLTERQNKKVLMASLDTRRPAAQEQLRQLGEQTKVAT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G + +A A + A+ DV+I+DTAGR H + LM + + +V + Sbjct: 160 LPIIAGQNPVDIARRAVQAAKLGGHDVVILDTAGRTHIDEPLMVEMADIKKV------SS 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH +L V D+ TGQ+A+ + F G TGL++T+MDG RGG + + P+ + Sbjct: 214 PHEILLVADSLTGQDAVNLAKSFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE ++ LE F K + I G D Sbjct: 274 GTGEKMDGLEEFHPKRIADRILGMGD 299 >gi|229818302|ref|ZP_04448583.1| hypothetical protein BIFANG_03602 [Bifidobacterium angulatum DSM 20098] gi|229784172|gb|EEP20286.1| hypothetical protein BIFANG_03602 [Bifidobacterium angulatum DSM 20098] Length = 549 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 83/281 (29%), Positives = 137/281 (48%), Gaps = 29/281 (10%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKML- 96 DG E+ L+ +D+ + V + + + +VS Q+V+ V+E + +L Sbjct: 30 DGTIREIRRALLDADVALDVVRSFTASIRERALGTEVSQSLNPAQQVVKIVNEELTSVLG 89 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 + +P N+ + P +I++ G+ G GKTT+ GKL + D+G +L A D R A+ Sbjct: 90 AGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGKLGYWLKDSGHTPLLVAADLQRPNAVT 148 Query: 157 QLKIWADRTSADFVCSEIG----------------SDAAALAYEAFKQAQAKKVDVLIID 200 QL++ +R E G D +A +A + A+ K D +IID Sbjct: 149 QLQVVGERADVPVYAPEKGVQADGGEAVMAPGQTTGDPVKVARDAVELAKQKLYDTVIID 208 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL + LM K R ++ D P+ +L V+DA GQ+A++ + F TG Sbjct: 209 TAGRLGVDEELM----KQARDIR--DAVQPNEILFVIDAMIGQDAVQTAKAFDEGVDFTG 262 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 ++++K+DG ARGG + + P+ F GEG+ D E F Sbjct: 263 VVLSKLDGDARGGAALSVASVTGKPILFASTGEGLKDFEVF 303 >gi|157692277|ref|YP_001486739.1| signal recognition particle protein Ffh [Bacillus pumilus SAFR-032] gi|157681035|gb|ABV62179.1| signal recognition particle protein Ffh [Bacillus pumilus SAFR-032] Length = 446 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 112/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K M+ A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMMVAADIYRPAAIQQLQTLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A ++A+ + D +I+DTAGRLH + LM + K+ V Sbjct: 159 PVFSLGDQVSPVEIAKQAIEKAKEEHHDYVILDTAGRLHIDEELMDELQKVKEVAN---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+D+ TGQ+A+ + F+ G TG+++TK+DG RGG + I P+ Sbjct: 215 --PEEIFLVVDSMTGQDAVNVAKSFNEQLGLTGVVLTKLDGDTRGGAALSIRAVTNTPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F +GE ++ +EPF + ++ I G D Sbjct: 273 FAALGEKLDAIEPFHPERMASRILGMGD 300 >gi|154486611|ref|ZP_02028018.1| hypothetical protein BIFADO_00428 [Bifidobacterium adolescentis L2-32] gi|154084474|gb|EDN83519.1| hypothetical protein BIFADO_00428 [Bifidobacterium adolescentis L2-32] Length = 549 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 92/324 (28%), Positives = 154/324 (47%), Gaps = 36/324 (11%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F+S + +L + S +L DG E+ L+ +D+ + V + + + Sbjct: 4 FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGRIRERALG 63 Query: 77 KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +VS Q+V+ V+E + +L + +P N+ + P +I++ G+ G GKTT+ GK Sbjct: 64 TEVSEALNPAQQVVKIVNEELTAVLGAGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 122 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175 L + D+G +L A D R A+ QL++ +R E G Sbjct: 123 LGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVVSPGQT 182 Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 D +A +A + A+ K D +IIDTAGRL + LM K R ++ D P+ +L Sbjct: 183 TGDPVKVARDAVEVAKQKLYDTVIIDTAGRLGVDEELM----KQARDIR--DAVQPNEIL 236 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DA GQ+A++ + F TG++++K+DG ARGG + + P+ F GEG Sbjct: 237 FVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEG 296 Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318 + D E F ++ I LD G+ Sbjct: 297 LKDFEVFHPDRMASRI---LDMGD 317 >gi|71901947|ref|ZP_00684000.1| Signal recognition particle protein [Xylella fastidiosa Ann-1] gi|71728288|gb|EAO30466.1| Signal recognition particle protein [Xylella fastidiosa Ann-1] Length = 455 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 87/291 (29%), Positives = 152/291 (52%), Gaps = 17/291 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L I + RL ++ +RE E+ L+ +D+ ++V Q ++E + + Sbjct: 2 FESLTQRLSGTIERLRGRGRLTEENIREATREVRIALLEADVALSVVQALIERIKIRALG 61 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V Q ++ V + + ++ + N + P VIL+ G+ G GKT+++GKL Sbjct: 62 QEVLKSLTPGQALIKVVRDELAAVMGDSASELNLNVPA-PAVILLAGLQGAGKTSMVGKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + K VM+ + D +R AAI+QL+I +++ + S + + + A A+ Sbjct: 121 AKYLKEKRKKKVMVVSADVYRPAAIEQLRILSEQVNVLCFPSSVEQNPVDIVRAAIADAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 VDVL++DTAGRL + +M I + D P L V+D+ TGQ+A + Sbjct: 181 KSFVDVLLVDTAGRLAIDQGMMDEIKAL------HDTLVPVETLFVVDSMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 F TG+I+TK DG ARGGG + + P+ F+G GE ++DL+ F Sbjct: 235 AFSEALPLTGVILTKTDGDARGGGALSVRYITGRPIKFVGTGEKVDDLDVF 285 >gi|149019283|ref|ZP_01834645.1| glucose-inhibited division protein B [Streptococcus pneumoniae SP23-BS72] gi|147931153|gb|EDK82132.1| glucose-inhibited division protein B [Streptococcus pneumoniae SP23-BS72] Length = 523 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRLAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QAQ D ++IDTAGRL + +LM +R +K L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|154498106|ref|ZP_02036484.1| hypothetical protein BACCAP_02087 [Bacteroides capillosus ATCC 29799] gi|150273096|gb|EDN00253.1| hypothetical protein BACCAP_02087 [Bacteroides capillosus ATCC 29799] Length = 456 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 87/304 (28%), Positives = 151/304 (49%), Gaps = 26/304 (8%) Query: 30 EGITDIISS---------RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAK 77 EG+T+ +S+ R + V+E ++++ L+ +D+ V + V ++ + Sbjct: 4 EGLTEKLSNAFKKLRGKGRLTEADVKEAMKEIRMALLEADVNYKVVKDFVAKVTERAVGS 63 Query: 78 DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 DV Q ++ V+E + ++ S P V+++VG+NG GKTT KL+ Sbjct: 64 DVLESLTPAQMIVKIVNEELTALMGGESAKLTIS-PKPPTVVMLVGLNGAGKTTNGAKLA 122 Query: 133 KKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 M G + +L A DTFR AAI QL++ + +G D +A + A+ Sbjct: 123 GFMKKQNGKRPLLVACDTFRPAAIQQLEVVGGQLGVPVFQQGLG-DPVEIAKAGIEHART 181 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D++ +DTAGRLH + LMA + +M + +P +L ++DA GQ+A+ ++ Sbjct: 182 HGNDIVFLDTAGRLHVDDQLMAELSRMKEAV------SPTEILLIVDAMIGQDAVNAAKV 235 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F TG+++TK+DG ARGG + I P+ F+G GE ++ +E F ++ I Sbjct: 236 FDQTLDLTGVMLTKLDGDARGGAALSIKAVTGKPIKFIGTGEKLDQIEVFHPDRMASRIL 295 Query: 312 GCLD 315 G D Sbjct: 296 GMGD 299 >gi|291166848|gb|EFE28894.1| signal recognition particle protein [Filifactor alocis ATCC 35896] Length = 451 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 109/209 (52%), Gaps = 8/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P V+++VG+ G GKTT + K+ G M A D +R AAI QL++ ++ Sbjct: 98 SKPPTVVMMVGLQGAGKTTTVAKIGHLFKKQGKVPMAIACDVYRPAAIKQLQVVGEQAGI 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 E + ++A ++A+ D+++IDTAGRLH + G+++ LK++ Sbjct: 158 TVYTEEGNKNPVSIAKNGVERAKVLGHDLVLIDTAGRLHID-------GELMDELKQIKE 210 Query: 228 HA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P +L V+D+ TGQ+A+ + F G G+++TK+DG RGG + I P+ Sbjct: 211 QVRPTEILLVVDSMTGQDAVNVSQSFDEALGVDGIVLTKLDGDTRGGAALSIKAVTGKPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F +GE + DLEPF ++ I G D Sbjct: 271 KFSAIGEKLGDLEPFYPDRMASRILGMGD 299 >gi|15604743|ref|NP_219527.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia trachomatis D/UW-3/CX] gi|3328415|gb|AAC67615.1| Signal Recognition Particle GTPase [Chlamydia trachomatis D/UW-3/CX] Length = 448 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 110/204 (53%), Gaps = 9/204 (4%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P VIL+ G+ G GKTT KL+ KV++A+ D R +A++QL+ +T AD Sbjct: 99 PAVILLCGLQGAGKTTTCAKLADYFLREKKAKKVLVASCDLKRFSAVEQLEGLVKQTGAD 158 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 F E G+D +A EA + A+++ D++++DTAGRLH + LM + + RV Sbjct: 159 FFRRE-GNDPVDMAAEAVQHAKSQGYDLVLVDTAGRLHVDDALMDELVAIARV------T 211 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P L V++ GQ+A+ + F G TG++++ DG AR G ++ + P+ F Sbjct: 212 TPCETLFVMNLAMGQDAVVTAKAFDERLGLTGVVVSMADGDARAGAVLSVKSLLNKPIKF 271 Query: 289 LGVGEGINDLEPFVAKDFSAVITG 312 G GE I DL PF A+ + I G Sbjct: 272 EGCGEKIKDLRPFNAQSMAERILG 295 >gi|322387559|ref|ZP_08061168.1| signal recognition particle protein [Streptococcus infantis ATCC 700779] gi|321141426|gb|EFX36922.1| signal recognition particle protein [Streptococcus infantis ATCC 700779] Length = 521 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 112/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEEDARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QA+A D ++IDTAGRL + +LM +R +K L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDELLM----NELRDVKTL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVIDAMIGQEAANVAREFNAQLEVTGIILTKIDGDTRGGAALSVRHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F ++ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMASRILGMGD 300 >gi|304316926|ref|YP_003852071.1| signal recognition particle protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778428|gb|ADL68987.1| signal recognition particle protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 446 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 86/276 (31%), Positives = 142/276 (51%), Gaps = 16/276 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSK 101 +E++ L+ +D+ V ++ + + K ++V Q V+ V++ + ++ SK Sbjct: 33 KEVKIALLEADVNFKVVKEFINTVTEKSLGQEVMESLTPAQHVIKIVNDELTALMG--SK 90 Query: 102 PFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 +FS +P +I++VG+ G GKTT GKL+ + G +L A D +R AAI QL++ Sbjct: 91 ESKINFSDKPPTIIMMVGLQGSGKTTTSGKLANYLKSKGKNPVLVACDIYRPAAIKQLQV 150 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 + + +A A A+ +V+IIDTAGRLH + LM + K I+ Sbjct: 151 VGSSINVPVFSMGDKTTPVDIAKGAVDFAKNNNYNVVIIDTAGRLHIDEELMDEL-KNIK 209 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI-V 279 D P+ +L V+DA TGQ+ + E F+ G+I+TK+DG RGG + + Sbjct: 210 -----DAVNPNEILLVVDAMTGQDVVNVAESFNEKLDIDGVILTKLDGDTRGGAALSVKA 264 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 VTHK P+ F+ GE + D+E F ++ I G D Sbjct: 265 VTHK-PIKFIASGEKLTDIEVFHPDRMASRILGMGD 299 >gi|300858747|ref|YP_003783730.1| signal recognition particle protein [Corynebacterium pseudotuberculosis FRC41] gi|300686201|gb|ADK29123.1| signal recognition particle protein [Corynebacterium pseudotuberculosis FRC41] gi|302206454|gb|ADL10796.1| Signal recognition particle protein (Fifty-four-like protein) [Corynebacterium pseudotuberculosis C231] gi|302331010|gb|ADL21204.1| signal recognition particle protein [Corynebacterium pseudotuberculosis 1002] gi|308276696|gb|ADO26595.1| Signal recognition particle protein (Fifty-four-like protein) [Corynebacterium pseudotuberculosis I19] Length = 535 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 94/318 (29%), Positives = 155/318 (48%), Gaps = 30/318 (9%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L ++ + S ++ + V E+ L+ +D+ + V + + + + Sbjct: 2 FESLSDRLGNALSGLRSKGKVTEADINAVAREIRLALLEADVSLPVVRGFIARIKDRALG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS ++V+ V+E + +L ++ N + P VI++ G+ G GKTT+ GKL Sbjct: 62 VEVSKALNPAEQVIKIVNEELTTILGGETRRLNL-AKNPPTVIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR-----------TSADFVCSEIGS---D 177 +K + G ML A D R A+ QL+I +R TS D E+G+ D Sbjct: 121 AKHLQSQGHTPMLVACDLQRPGAVQQLQIVGERAGVPTFAPDPGTSIDSNDHEMGTSHGD 180 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 +A + ++A+ + DV+I+DTAGRL + LM + IR D P VL V+ Sbjct: 181 PVGVARQGIEEAKRAQHDVVIVDTAGRLGIDETLMTQ-ARNIR-----DAIRPDEVLFVI 234 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 D+ GQ+A+ E F TG+++TK+DG ARGG + I P+ F GE + D Sbjct: 235 DSMIGQDAVNTAEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPIMFASTGEKLED 294 Query: 298 LEPFVAKDFSAVITGCLD 315 + F + S+ I G D Sbjct: 295 FDVFHPERMSSRILGMGD 312 >gi|311063767|ref|YP_003970492.1| signal recognition particle subunit FFH/SRP54 [Bifidobacterium bifidum PRL2010] gi|310866086|gb|ADP35455.1| Ffh Signal recognition particle, subunit FFH/SRP54 [Bifidobacterium bifidum PRL2010] Length = 548 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 90/324 (27%), Positives = 154/324 (47%), Gaps = 36/324 (11%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F+S + +L + S +L DG E+ L+ +D+ + V + + + Sbjct: 4 FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTARIRERALG 63 Query: 77 KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +VS Q+V+ V+E + +L + +P N+ + P +I++ G+ G GKTT+ GK Sbjct: 64 TEVSEALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 122 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175 L + D+G +L A D R A+ QL++ +R E G Sbjct: 123 LGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGDSVSAPGET 182 Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 D +A ++ A+ K D +IIDTAGRL + +LM + R ++ D P+ +L Sbjct: 183 SGDPVKVARDSIALAKQKLYDTVIIDTAGRLGVDEVLM----QQARDIR--DAVNPNEIL 236 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DA GQ+A++ + F TG++++K+DG ARGG + + P+ F GEG Sbjct: 237 FVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEG 296 Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318 + D E F ++ I LD G+ Sbjct: 297 LKDFEVFHPDRMASRI---LDMGD 317 >gi|227875974|ref|ZP_03994097.1| signal recognition particle protein [Mobiluncus mulieris ATCC 35243] gi|227843506|gb|EEJ53692.1| signal recognition particle protein [Mobiluncus mulieris ATCC 35243] Length = 564 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 85/280 (30%), Positives = 137/280 (48%), Gaps = 18/280 (6%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ + V + ++ K Y S Q+++ +++ + ++L ++ Sbjct: 33 EIRRALLEADVALEVVKDFTAQVKEKAYGAARSEALNPAQQIVKIINDELVEILGGEARE 92 Query: 103 FNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 ++ P V ++VG+ G GKTT+ GKL K + K +L A D R A+ QL+I Sbjct: 93 LHFVKPGKGPTVFMLVGLQGAGKTTLAGKLGKWLGKQDKKTLLVAADLQRPNAVTQLQIV 152 Query: 162 ADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 ++ E G+ D +A A DV+I+DTAGRL + LMA Sbjct: 153 GEQAGVSVFAPEPGNGVGDPVDVARRGLALATGSGYDVMIVDTAGRLGVDEKLMA----Q 208 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 R ++ D P VL VLDA GQ+A+R F TG++++K+DG ARGG + + Sbjct: 209 ARAIR--DEVQPEEVLFVLDAMIGQDAVRTARAFQEGVDFTGVVLSKLDGDARGGAALSV 266 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 PV F GEG++D E F A ++ I LD G+ Sbjct: 267 RGVTGKPVLFASTGEGLDDFERFHADRMASRI---LDMGD 303 >gi|194750277|ref|XP_001957554.1| GF23972 [Drosophila ananassae] gi|190624836|gb|EDV40360.1| GF23972 [Drosophila ananassae] Length = 508 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 115/226 (50%), Gaps = 8/226 (3%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 ELI K++ P KP+ + +VI+ VG+ G GKTT KL+ K L DT Sbjct: 82 ELI-KLVDPGVKPYQ-PIKGKANVIMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+ A DQ+K A + F S D +A E + + +++I+DT+GR Sbjct: 140 FRAGAYDQIKQNATKARIPFYGSYTEIDPVVIAQEGVDMFKREGFEMIIVDTSGRHKQEE 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 L +M+ V ++P +++ V+DAT GQ Q + F +I+TK+DG Sbjct: 200 SLFE---EMLAVANAVNPD---NIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGH 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 A+GGG + V + P+ F+G GE I+DLEPF K F + + G D Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 299 >gi|325978265|ref|YP_004287981.1| signal recognition particle subunit FFH/SRP54 protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178193|emb|CBZ48237.1| Signal recognition particle subunit FFH/SRP54 protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 521 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 90/308 (29%), Positives = 158/308 (51%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L+ +I ++L + V +E+ L+ +D+ + V + ++ + + Sbjct: 3 FESLTERLQGVFKNIRGKKKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130 ++ Q+++ V+E + ++L S+ + S + P +I++VG+ G GKTT GK Sbjct: 63 HEIIDTLDPTQQIVKIVNEELTEILG--SETAELEKSPKIPTIIMMVGLQGAGKTTFAGK 120 Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187 L+ K+ D + ++ A D +R AAIDQLK ++ + ++G+D +A + Sbjct: 121 LANKLIKDENARPLMIAADIYRPAAIDQLKTLGNQINVPVF--DMGTDHSAVEIVTNGLA 178 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 QA+ D +IIDTAGRL + LM + +R +K L P+ +L V+D+ GQ A Sbjct: 179 QAKENHNDYVIIDTAGRLQIDEKLM----EELRDVKAL--ANPNEILLVVDSMIGQEAAN 232 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG RGG + I P+ F G GE I D+E F S Sbjct: 233 VADEFNKQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMS 292 Query: 308 AVITGCLD 315 + I G D Sbjct: 293 SRILGMGD 300 >gi|225351180|ref|ZP_03742203.1| hypothetical protein BIFPSEUDO_02770 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158636|gb|EEG71878.1| hypothetical protein BIFPSEUDO_02770 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 549 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 89/307 (28%), Positives = 146/307 (47%), Gaps = 33/307 (10%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F+S + +L + S +L DG E+ L+ +D+ + V + + + Sbjct: 4 FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGRIRERALG 63 Query: 77 KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +VS Q+V+ V+E + +L + +P N+ + P VI++ G+ G GKTT+ GK Sbjct: 64 TEVSQALNPAQQVVKIVNEELTAVLGAGVDRPLNF-AKNPPTVIMLAGLQGAGKTTLAGK 122 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175 L + D+G +L A D R A+ QL++ +R E G Sbjct: 123 LGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVASPGLT 182 Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 D +A +A A+ K D +IIDTAGRL + LM K R ++ D P+ +L Sbjct: 183 TGDPVKVARDAVALAKQKLYDTVIIDTAGRLGVDEELM----KQARDIR--DAVQPNEIL 236 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DA GQ+A++ + F TG++++K+DG ARGG + + P+ F GEG Sbjct: 237 FVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEG 296 Query: 295 INDLEPF 301 + D E F Sbjct: 297 LKDFEVF 303 >gi|297620933|ref|YP_003709070.1| Signal recognition 54 kDa protein Ffh [Waddlia chondrophila WSU 86-1044] gi|297376234|gb|ADI38064.1| Signal recognition 54 kDa protein Ffh [Waddlia chondrophila WSU 86-1044] Length = 442 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 90/297 (30%), Positives = 141/297 (47%), Gaps = 31/297 (10%) Query: 29 KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV 88 +E I + +S RL L+ +D+ +VA+ +V+ L K VL + Sbjct: 24 EENIAEAVSEVRL----------ALLEADVNYSVAKVLVKRLKEKSLG-----DAVLKSI 68 Query: 89 S------ELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK--KMSDA 138 S +++H L+ L + D +P V+++ G+ G GKTT KL+ K Sbjct: 69 SPGQQFIKIVHDELIELMGGEEAPLDLKSKPAVVMMCGLQGSGKTTQCAKLANYLKKQKK 128 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 + +LAA D R AAI+QLK + + +A A ++A+ + D+LI Sbjct: 129 CRQPLLAACDLQRPAAIEQLKTLGGKIGVPVFSIPNENSPVKVAKAALERARQEGFDLLI 188 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +DTAGRLH + LM + ++ + K PH +L V +A TGQ+A+ F+ Sbjct: 189 LDTAGRLHIDDELMDQLQQIKQATK------PHEILFVANAATGQDAVTVASEFNQKVEV 242 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TG I+T +D RGG I I P+ F GVGE I+D++PF + I G D Sbjct: 243 TGTILTMLDSNTRGGAAISIREVTGKPLKFEGVGEKIDDIQPFNPNSMADRILGMGD 299 >gi|288905279|ref|YP_003430501.1| signal recognition particle protein [Streptococcus gallolyticus UCN34] gi|288732005|emb|CBI13570.1| signal recognition particle protein [Streptococcus gallolyticus UCN34] Length = 521 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 90/308 (29%), Positives = 158/308 (51%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L+ +I ++L + V +E+ L+ +D+ + V + ++ + + Sbjct: 3 FESLTERLQGVFKNIRGKKKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130 ++ Q+++ V+E + ++L S+ + S + P +I++VG+ G GKTT GK Sbjct: 63 HEIIDTLDPTQQIVKIVNEELTEILG--SETAELEKSPKIPTIIMMVGLQGAGKTTFAGK 120 Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187 L+ K+ D + ++ A D +R AAIDQLK ++ + ++G+D +A + Sbjct: 121 LANKLIKDENARPLMIAADIYRPAAIDQLKTLGNQINVPVF--DMGTDHSAVEIVTNGLA 178 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 QA+ D +IIDTAGRL + LM + +R +K L P+ +L V+D+ GQ A Sbjct: 179 QAKENHNDYVIIDTAGRLQIDEKLM----EELRDVKAL--ANPNEILLVVDSMIGQEAAN 232 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG RGG + I P+ F G GE I D+E F S Sbjct: 233 VADEFNKQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMS 292 Query: 308 AVITGCLD 315 + I G D Sbjct: 293 SRILGMGD 300 >gi|108804225|ref|YP_644162.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rubrobacter xylanophilus DSM 9941] gi|108765468|gb|ABG04350.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rubrobacter xylanophilus DSM 9941] Length = 443 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 81/276 (29%), Positives = 134/276 (48%), Gaps = 12/276 (4%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPL 99 V E+ L+ +D+ V ++ V + + +VS Q+V+ V+E + ++ Sbjct: 30 VTREIRLALLEADVNYNVVKEFVGRVRERATGAEVSRALSPGQQVVKIVNEELANLMGGS 89 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 + ++ S P V+++ G+NG GKTT GKL+ + G L A DT+R AA+DQL+ Sbjct: 90 AHKLSY-ASRPPTVVMLAGLNGHGKTTAAGKLALFVRKQGKNPFLVACDTYRPAAVDQLR 148 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 + +A + A+ D +I+DTAGR ++ +M +G++ Sbjct: 149 QIGRELGVPVYDEGTEAPPEEIAERGVRAARDGGYDFVIVDTAGRQVVDTEMMEELGRVR 208 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 R + PHSVL VLD TGQ A+ + F A G+I+TK+DG ARGG + +V Sbjct: 209 RACR------PHSVLLVLDVVTGQTAVEVAQAFQEYADFDGMILTKLDGDARGGAALSVV 262 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F GE +++ + F + I G D Sbjct: 263 SVTGRPIKFASEGEKMSEFDYFYPDRMAGRILGMGD 298 >gi|154151417|ref|YP_001405035.1| signal recognition particle protein Srp54 [Candidatus Methanoregula boonei 6A8] gi|153999969|gb|ABS56392.1| GTP-binding signal recognition particle SRP54, G- domain [Methanoregula boonei 6A8] Length = 441 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 86/259 (33%), Positives = 124/259 (47%), Gaps = 16/259 (6%) Query: 57 DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116 D+ A+ + ++E L K V R++Y EL+ + + D P VIL+ Sbjct: 50 DLSKAIRTRSLDEELPKNTNVREHVLRIVY--QELVRLVYA------SADLKLEPQVILM 101 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 G+ G GKTT K+++ G+KV + DTFR A DQL + + + + Sbjct: 102 AGLQGSGKTTTTAKIARYFQKKGMKVGVICADTFRPGAYDQLSTLCAKINVPCFGNPKVT 161 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 DA + E K +V+I+DT GR L+ I + + K A H L V Sbjct: 162 DARQIVREGL--VAVKDQEVIIVDTQGRHALEPDLIQEIIDLNALTK-----ASHRWL-V 213 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 +DA GQ A Q + FH G G+I+TKMDGTA+GGG + V K + F+G GE I Sbjct: 214 IDAALGQQASEQAKRFHEAIGIDGVIITKMDGTAKGGGALSAVAETKSGIVFIGAGETIE 273 Query: 297 DLEPFVAKDFSAVITGCLD 315 DLE F A F + + G D Sbjct: 274 DLERFDANGFISRLLGMGD 292 >gi|291459095|ref|ZP_06598485.1| signal recognition particle protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291418349|gb|EFE92068.1| signal recognition particle protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 458 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 93/306 (30%), Positives = 144/306 (47%), Gaps = 29/306 (9%) Query: 30 EGITDIISS---------RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAK 77 E +TD +S+ R +D V L ++ L+ +D+ + + ++ K + Sbjct: 4 ENLTDRLSNIFSGLSGKGRLTEDDVNAALREIRMALLEADVNFKLVKDFTAKVKEKAVGE 63 Query: 78 DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 DV Q V+ V+E + +M+ + VI++VG+ G GKTT KL+ Sbjct: 64 DVMHSLTPAQMVVKIVNEELTEMMGSETTEIRLRPQSEISVIMMVGLQGAGKTTSAAKLA 123 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 K K +L A D +R AAIDQL++ A++ F +A + + A+ + Sbjct: 124 GKFKKQHRKPLLVACDVYRPAAIDQLRVNAEKQEVPFFSLGDKLSPVEIARRSLEYAKEQ 183 Query: 193 KVDVLIIDTAGRLHNNSILM---AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +++IIDTAGRL + LM I K +RV S+L V DA TGQ A+ Sbjct: 184 GQNLVIIDTAGRLQIDERLMKELQDIKKAVRV--------DWSILTV-DAMTGQEAVNVA 234 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F G G+I+TK DG RGG + I P+ +LG+GE ++DLE F + Sbjct: 235 ESFSEKVGIDGVILTKCDGDTRGGAALSIRAMCGKPILYLGMGEKLSDLEQFYPDRMAGR 294 Query: 310 ITGCLD 315 I G D Sbjct: 295 ILGMGD 300 >gi|120403173|ref|YP_953002.1| signal recognition particle protein [Mycobacterium vanbaalenii PYR-1] gi|119955991|gb|ABM12996.1| signal recognition particle subunit FFH/SRP54 (srp54) [Mycobacterium vanbaalenii PYR-1] Length = 522 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 92/317 (29%), Positives = 150/317 (47%), Gaps = 29/317 (9%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L ++ + RL D E+ L+ +D+ + V + + + + Sbjct: 2 FESLSDRLTGALSGLRGKGRLTDADIDATAREIRLALLEADVSLPVVRAFISRIKERAKG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L ++ + + P VI++ G+ G GKTT+ GKL Sbjct: 62 AEVSAALNPAQQVVKIVNEELIGILGGETRQLAF-ARNPPTVIMLAGLQGSGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-------------SDA 178 +K + G +L A D R A++QL+I +R G D Sbjct: 121 AKWLKGQGHTPLLVACDLQRPGAVNQLQIVGERAGVSVFAPHPGVSPDGATIEQMTSGDP 180 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 ++A +A++K DV+I+DTAGRL ++ LMA IR D P VL VLD Sbjct: 181 VSVAAAGLAEARSKHYDVVIVDTAGRLGIDAELMA-QAAAIR-----DAVNPDEVLFVLD 234 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A GQ+A+ + F G TG+++TK+DG ARGG + + +P+ F GE + D Sbjct: 235 AMIGQDAVTTADAFREGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFASAGEKLEDF 294 Query: 299 EPFVAKDFSAVITGCLD 315 + F ++ I G D Sbjct: 295 DVFHPDRMASRILGMGD 311 >gi|88811739|ref|ZP_01126993.1| 45S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNA [Nitrococcus mobilis Nb-231] gi|88791130|gb|EAR22243.1| 45S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNA [Nitrococcus mobilis Nb-231] Length = 458 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 107/209 (51%), Gaps = 13/209 (6%) Query: 111 PHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V++V G+ G GKTT + KL + + KV+ + D +R AAI+QL+ A F Sbjct: 100 PAVVMVAGLQGSGKTTSLAKLGRWLLQHQKKKVLTVSLDVYRPAAIEQLQRLARDVEIGF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 ++ D A A + A+ DVL++DTAGRLH + +M + ++ HA Sbjct: 160 FPTQASDDPVRAASAALEYARNHYYDVLLLDTAGRLHVDQAMMDEVRRI---------HA 210 Query: 230 ---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+D+ TGQ+A + F TG+I+TK DG ARGG + I P+ Sbjct: 211 AAQPVETLFVVDSMTGQDAANTAKAFDEALPLTGIILTKTDGDARGGAALSIRYVTGKPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+GVGE + LEPF ++ I G D Sbjct: 271 KFIGVGEKTDALEPFYPDRIASRILGMGD 299 >gi|294948604|ref|XP_002785803.1| signal recognition particle 54 kDa protein 2 [Perkinsus marinus ATCC 50983] gi|239899911|gb|EER17599.1| signal recognition particle 54 kDa protein 2 [Perkinsus marinus ATCC 50983] Length = 506 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/317 (28%), Positives = 152/317 (47%), Gaps = 27/317 (8%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 ++S+ S +R L K +S + + E + + + +E+ L+++D+ V K Sbjct: 6 LSSQLTSALRSLQKAASSLNEEDDEPLEECL----------KEIAKALLQADVNVKYVSK 55 Query: 66 IVEELLT--KRYA-----KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118 + + + T K Y + +V+++++D EL+ K+L P P R +V++ VG Sbjct: 56 LRQSIRTQMKLYEGAAINRHKTVRKLVFD--ELV-KLLTPSRAPRTLT-KGRSNVVMFVG 111 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 + G GKTT K + G KV L DTFR+ A DQL+ A + F S +D Sbjct: 112 LQGSGKTTSCTKYALYYQRRGWKVALVCADTFRAGAFDQLRQNATKALIPFYGSHTITDP 171 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 +A E + + ++ D++I+DT+GR L + ++ +K P V+ V+D Sbjct: 172 VQVASEGVELFKEERYDLIIVDTSGRHKQELALFDEMKQVSEAVK------PDDVIFVMD 225 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 + GQ Q F +I+TK+DG A+GGG + V P+ F+G GE ++D Sbjct: 226 SHIGQACSAQAAAFSNAVDVGSVIITKLDGHAKGGGALSAVAATDSPIIFIGTGEHLDDF 285 Query: 299 EPFVAKDFSAVITGCLD 315 E F K F + G D Sbjct: 286 ERFEVKGFVGRLLGIGD 302 >gi|195376317|ref|XP_002046943.1| GJ13160 [Drosophila virilis] gi|194154101|gb|EDW69285.1| GJ13160 [Drosophila virilis] Length = 508 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 113/226 (50%), Gaps = 8/226 (3%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 ELI K++ P KP+ + +VI+ VG+ G GKTT KL+ K L DT Sbjct: 82 ELI-KLVDPGVKPYQ-PVKGKANVIMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+ A DQ+K A + F S D +A E + + +++I+DT+GR Sbjct: 140 FRAGAYDQIKQNATKARIPFYGSYTEIDPVVIAQEGVDMFKREGFEMIIVDTSGRHKQEE 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 L +L + +P +++ V+DAT GQ Q + F +I+TK+DG Sbjct: 200 SLFE------EMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKEKVDIGSVIITKLDGH 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 A+GGG + V + P+ F+G GE I+DLEPF K F + + G D Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 299 >gi|313236259|emb|CBY11581.1| unnamed protein product [Oikopleura dioica] Length = 520 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 87/291 (29%), Positives = 138/291 (47%), Gaps = 29/291 (9%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 L K L E +I ++L DGV++++ DL +IG L KR Sbjct: 28 LKKCLKDVQSALLEADVNIKLVKQLTDGVKKQI-DL---DNIGTG---------LNKRRV 74 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKM 135 +V + L + + P KP W + R VI+ VG+ G GKTT KL+ Sbjct: 75 IQTAVYKELCRICD-------PGVKP--WKPTKGRSSVIMFVGLQGSGKTTSCIKLAYHY 125 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 G K + DTFR+ A DQ+K + F S D A +AY+ + + +K D Sbjct: 126 QKKGWKCAVVCADTFRAGAYDQVKQNCTKARIPFYGSLTEPDPAVIAYDGVETFKKEKFD 185 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 ++I+DT+GR L +M++V ++ P +++ V+DA+ GQ Q + F Sbjct: 186 IIIVDTSGRHKQEDSLFE---EMLQVNNAVE---PDNIIFVMDASIGQACESQAKAFKDQ 239 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +I+TK+D A+GGG + + + P+ F+G GE I++LEPF F Sbjct: 240 VDVGSVIITKLDSHAKGGGALSAIAATQSPIVFIGTGEHIDELEPFETTKF 290 >gi|289644822|ref|ZP_06476875.1| signal recognition particle protein [Frankia symbiont of Datisca glomerata] gi|289505378|gb|EFD26424.1| signal recognition particle protein [Frankia symbiont of Datisca glomerata] Length = 530 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 90/308 (29%), Positives = 155/308 (50%), Gaps = 22/308 (7%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L K F+S K + DI ++ R E+ L+ +D+ + V + V + + Sbjct: 8 RLDKAFSSLRGKGRLSEADISATAR-------EIRVALLEADVALPVVRAFVGAVRERAR 60 Query: 76 AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++VS Q+V+ V++ + +L + + + P VIL+ G+ G GKTT+ GK Sbjct: 61 GEEVSTSLNPAQQVIKIVNQELVTILGGGTTTLRFARTP-PTVILLAGLQGTGKTTLAGK 119 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187 L + + + G +L A D R A+ QL++ A + D E G+ D A+A A + Sbjct: 120 LGRWLKEQGHTPLLVAADLQRPNAVTQLQVVAGQAGVDVYAPEPGNGVGDPVAVARAAVE 179 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ + DV+++DTAGRL ++ +M IR D +P +L V+DA GQ+A+ Sbjct: 180 HARRRLHDVVVVDTAGRLGVDADMMRQAAD-IR-----DVTSPDEILFVVDAMIGQDAVT 233 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F G TG+++TK+DG ARGG + + P+ F GE ++D + F + + Sbjct: 234 TAQAFADGVGFTGVVLTKLDGDARGGAALSVAHLTGRPIMFASTGEALDDFDVFHPERMA 293 Query: 308 AVITGCLD 315 + I G D Sbjct: 294 SRILGMGD 301 >gi|254292886|ref|YP_003058909.1| signal recognition particle protein [Hirschia baltica ATCC 49814] gi|254041417|gb|ACT58212.1| signal recognition particle protein [Hirschia baltica ATCC 49814] Length = 501 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/274 (31%), Positives = 146/274 (53%), Gaps = 12/274 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ + V ++ + ++ K +DV SV Q+V+ V++ + +ML + Sbjct: 33 EIRVALLEADVALDVVKQFIADIKPKAVGEDVIRSVKPGQQVIKIVNDGLVEMLGGNEEA 92 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIW 161 + P VI++ G+ G GKTT GKL++++ + K V++A+ D +R AA+ QLK+ Sbjct: 93 QGLRIDNIPAVIMMAGLQGSGKTTTTGKLARRLKNHDRKKVLMASLDVYRPAAMHQLKVL 152 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 ++ D + G +A A A+ DV+I+DTAGR + +M G+ +V Sbjct: 153 GEQIEVDTLPITDGQMPVDIAKRAVNAAKLGGYDVVILDTAGRTTLDEQMM---GEAAQV 209 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 + +P ++L V DA TGQ+A+ F+ TGLI+T+MDG RGG + + Sbjct: 210 AEFANP--AETIL-VADALTGQDAVETARRFNDRLKLTGLILTRMDGDGRGGAALSMRAV 266 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P+ FLG GE + LE F A+ + I G D Sbjct: 267 TGLPIKFLGTGEKSDGLEVFDARRIAGRILGQGD 300 >gi|83944830|ref|ZP_00957196.1| signal recognition particle protein [Oceanicaulis alexandrii HTCC2633] gi|83851612|gb|EAP89467.1| signal recognition particle protein [Oceanicaulis alexandrii HTCC2633] Length = 515 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 90/289 (31%), Positives = 150/289 (51%), Gaps = 18/289 (6%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQ----KIVEELLTKRYAKDVSV-QRVLYDVSE 90 +S + +D +RE + L+ +D+ + + K+ E+ + + + VS Q+V+ V + Sbjct: 22 LSEKDVDAALRE-IRVALLEADVALPAVKDFTAKVREKAIGEEVIRSVSPGQQVIKIVHD 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGD 148 + ++L +P + P V IL+ G+ G GKTT KL+K++S+ KV++A+ D Sbjct: 81 GLVELLGGEGEPEGLTLTGEPPVAILMAGLQGSGKTTTTAKLAKRISEREKKKVLVASLD 140 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEI--GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 T R AA++QL A++ A C I G A +A A + + DV+I+DTAGR Sbjct: 141 TRRPAAMEQLAQMAEK--AGVACLPIVAGQSAVEIAKRAMSAGRLQGYDVVILDTAGRTS 198 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + +M K+ V + P L V D+ TGQ+A+ + F TGL++T+M Sbjct: 199 IDEEMMGEAAKIAEVAR------PRETLLVADSLTGQDAVETAKRFDERLKLTGLVLTRM 252 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG RGG + + +P+ FLGV E ++ L+ F AK + I G D Sbjct: 253 DGDGRGGAALSMRWVTGLPIKFLGVSEKVDGLDAFDAKRLAGRILGRGD 301 >gi|298373234|ref|ZP_06983223.1| signal recognition particle protein [Bacteroidetes oral taxon 274 str. F0058] gi|298274286|gb|EFI15838.1| signal recognition particle protein [Bacteroidetes oral taxon 274 str. F0058] Length = 440 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/294 (30%), Positives = 147/294 (50%), Gaps = 15/294 (5%) Query: 26 LKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRV 84 LK + IT+I + L D VR+ L D +D+ A+ +E+ K +V + + Sbjct: 16 LKGQGKITEINVAETLKD-VRKALLD----ADVNYKTAKTFTDEVKNKALGMNVLTAIKP 70 Query: 85 LYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLK 141 + +++H L L ++ + P V+L+ G+ G GKTT GKL+ + S G Sbjct: 71 NELMVKIVHDELAALMGNEHTELNLKGSPAVVLMSGLQGSGKTTFSGKLANMLKSKRGRH 130 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 +L A D +R AAI+QLK + + E ++ +A A K A+ D++IIDT Sbjct: 131 PLLVACDVYRPAAIEQLKTLGSQINVPVYTEEGNNNPVGIAENAIKHAKKNGNDIVIIDT 190 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AGRL + +M I + + +P +L V+DA TGQ+A+ + F+ G+ Sbjct: 191 AGRLAVDEQMMTEIANIKAAV------SPQEILFVVDAMTGQDAVNTAKAFNDRLNFDGV 244 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ++TK+DG RGG I I P+ F+G+GE ++ ++ F K + I G D Sbjct: 245 VLTKLDGDTRGGAAISIRSVVDKPIKFVGIGEKLDAIDVFYPKRMADRILGMGD 298 >gi|253997293|ref|YP_003049357.1| signal recognition particle protein [Methylotenera mobilis JLW8] gi|253983972|gb|ACT48830.1| signal recognition particle protein [Methylotenera mobilis JLW8] Length = 454 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/285 (30%), Positives = 141/285 (49%), Gaps = 13/285 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL--YDVSELIH 93 ++ + D +RE + L+ +D+ + V + + + + KDV +Q + V E+++ Sbjct: 22 LTEENIADAMRE-VRMALLEADVALPVVKDFIAAVKARAQGKDV-LQSLTPGQAVIEVVN 79 Query: 94 KMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 L+ L N + P +IL+ G+ G GKTT KL+K + + KV+LA+ D + Sbjct: 80 DELIALMGKANEGLNLAAVPPAIILMAGLQGSGKTTTSAKLAKLLKEQKKKVLLASADVY 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAI+QLK A + + S +A A+ DV+I DTAGRL + Sbjct: 140 RPAAIEQLKTLAQQLEIECFDSNASQAPLDIATATLDYAKRGYYDVVIFDTAGRLGIDEA 199 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 +MA I + L P L V+DA GQ+A+ + F TG+I+TK+DG + Sbjct: 200 MMAEIKALHAYLN------PIETLFVVDAMQGQDAINTAKAFGDTLPLTGVILTKLDGDS 253 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + + P+ ++GV E ++ LEPF ++ I G D Sbjct: 254 RGGAALSVRHVTGKPIKYIGVSEKVDGLEPFYPDRMASRILGMGD 298 >gi|225630810|ref|YP_002727601.1| Signal recognition particle GTPase [Wolbachia sp. wRi] gi|225592791|gb|ACN95810.1| Signal recognition particle GTPase [Wolbachia sp. wRi] Length = 447 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 93/294 (31%), Positives = 151/294 (51%), Gaps = 15/294 (5%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + LT+ S KL+ IIS + +RE + LI +D+ + VA+K + ++ Sbjct: 1 MFKSLTESLNSVFSKLRG--KSIISEDDFNLAMRE-IRIALIEADVSLEVAKKFINDIKD 57 Query: 73 K----RYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 K + K VS Q ++ V + + +L N P VI++VG+ G GKTT Sbjct: 58 KVIGEKVIKSVSPAQMIIKIVQDNLVAVLGSEKSDLNLAVKP-PAVIMMVGLQGAGKTTT 116 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 GKL+ K+ KVMLA+ D +R AA QL++ + + I + A Sbjct: 117 SGKLALKLKKQKKKVMLASLDIYRPAAQKQLEVLGKQIDVQTLPVVIDEKPITITKRALA 176 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ DVLI+DTAGRLH ++ +M ++ +K + +P V+ V DA GQ+A+ Sbjct: 177 AAKNDNYDVLILDTAGRLHIDNNMM----NELKAVKEI--ASPAEVILVADAMIGQDAVN 230 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F+ V G TG+I+T++DG ARGG + + + P+ F+ GE ++DL+ F Sbjct: 231 IAKSFNEVIGVTGIILTRVDGDARGGAALSMKMIADCPIKFIACGEKLSDLDDF 284 >gi|205373346|ref|ZP_03226150.1| signal recognition particle protein [Bacillus coahuilensis m4-4] Length = 382 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 110/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT GKLS + K +L A D +R AAI QL+ + + Sbjct: 36 PTVVMMVGLQGAGKTTTTGKLSNLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQLNLPV 95 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 +A + ++A+ D ++IDTAGRLH + LM + K I+ L + Sbjct: 96 FSMGDQVSPVEIAKKGIEKAKEDHQDYVLIDTAGRLHVDENLMDEL-KQIKELSK----- 149 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P + V+DA TGQ+A+ + F G TG+++TK+DG RGG + I + P+ F+ Sbjct: 150 PDEIFLVVDAMTGQDAVNVAKSFDDALGITGVVLTKLDGDTRGGAALSIRSVTEKPIKFV 209 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+GE ++ LEPF + + I G D Sbjct: 210 GLGEKMDALEPFHPERMAQRILGMGD 235 >gi|194014310|ref|ZP_03052927.1| signal recognition particle protein [Bacillus pumilus ATCC 7061] gi|194013336|gb|EDW22901.1| signal recognition particle protein [Bacillus pumilus ATCC 7061] Length = 446 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 113/208 (54%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + + M+ A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRQPMMVAADIYRPAAIQQLQTLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A ++A+ + D +I+DTAGRLH + LM + K+ V Sbjct: 159 PVFSLGDQVSPVEIAKQAIEKAKEEHHDYVILDTAGRLHIDEELMDELQKVKEV------ 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 +P + V+D+ TGQ+A+ + F+ G TG+++TK+DG RGG + I P+ Sbjct: 213 ASPEEIFLVVDSMTGQDAVNVAKSFNEQLGLTGVVLTKLDGDTRGGAALSIRAVTNTPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F +GE ++ +EPF + ++ I G D Sbjct: 273 FAALGEKLDAIEPFHPERMASRILGMGD 300 >gi|296446373|ref|ZP_06888318.1| signal recognition particle protein [Methylosinus trichosporium OB3b] gi|296256146|gb|EFH03228.1| signal recognition particle protein [Methylosinus trichosporium OB3b] Length = 514 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/274 (29%), Positives = 144/274 (52%), Gaps = 13/274 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ + V + +++ K +V SV Q V+ V++++ + L ++P Sbjct: 33 EVRRALLEADVALDVVRSFTDKVQQKAVGANVVKSVSPGQMVVKIVNDVMVETLGSTAQP 92 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIW 161 + D + P I++VG+ G GKTT K++K++ + G +V++A+ D R AA +QL I Sbjct: 93 IDLD-APAPVPIMLVGLQGAGKTTTTAKIAKRLKERHGKRVLMASLDVKRPAAQEQLAIL 151 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 + D + G D + A + A+ + DVL++DTAGR H + LM + ++ V Sbjct: 152 GRQVEVDTLPIVQGQDPVKITKRAEETARREGYDVLLLDTAGRTHIDEPLMEEMAQIKAV 211 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 K PH +L V+DA TGQ+A+ + F G TG+++T++DG RGG + + Sbjct: 212 SK------PHEILLVVDALTGQDAVNLAKNFDDRVGLTGIVLTRVDGDGRGGAALSMRAV 265 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ + GE ++ L+ F + I G D Sbjct: 266 TGKPIKLIATGEKMDALDEFSPSRIANRILGMGD 299 >gi|145503400|ref|XP_001437676.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124404829|emb|CAK70279.1| unnamed protein product [Paramecium tetraurelia] Length = 507 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/275 (29%), Positives = 127/275 (46%), Gaps = 20/275 (7%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH-------------KMLMPLS 100 I +I +A+ + V K+ +DV ++ L + + H +ML Sbjct: 31 ILGEIAMALLKADVNAKFIKKLREDVKMEFKLCEEENINHQKLIQKAVVDGLTRMLESDR 90 Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 KPF + +VI+ VG+ G GKTT K + G KV L DTFR+ A DQLK Sbjct: 91 KPFQPK-KGKQNVIMFVGLQGSGKTTTCTKYAYYYQKKGWKVALVCADTFRAGAFDQLKQ 149 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A + F S +D +A E + + +++I+DT+GR + L + ++ Sbjct: 150 NATKVRVPFYGSYTEADPVQIAQEGVNVFKKEAFEIIIVDTSGRHKQENDLFEEMKQVEA 209 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 +K P ++ V+D++ GQ Q F +I+TK+DG A+GGG + V Sbjct: 210 AVK------PDDIVFVMDSSIGQACFDQALAFKKAVNVGSVIITKLDGHAKGGGALSAVA 263 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + P+ F+G GE +DLE F A F + G D Sbjct: 264 ATESPIVFIGEGEHFDDLESFEASSFVRRLLGLGD 298 >gi|71906282|ref|YP_283869.1| signal recognition particle subunit FFH/SRP54 (srp54) [Dechloromonas aromatica RCB] gi|71845903|gb|AAZ45399.1| signal recognition particle subunit FFH/SRP54 (srp54) [Dechloromonas aromatica RCB] Length = 455 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 91/289 (31%), Positives = 153/289 (52%), Gaps = 20/289 (6%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 ++ + D +RE + L+ +D+ + V + + + K ++V Q ++ V Sbjct: 22 LTETNIGDALRE-VRMALLEADVALPVVKDFIAAVKEKAVGEEVIGSLSPGQALIGVVHA 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDT 149 + K++ + N++ + P ++L+ G+ G GKTT +GKL+K + + KV++ + D Sbjct: 81 ELTKIMGDAHEGINFN-TQPPAIVLMAGLQGAGKTTTVGKLAKFLKENHKKKVLVVSCDV 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI+QLK A + DF S +G A+A +A A+ DVL++DTAGRL + Sbjct: 140 YRPAAIEQLKSVAGQAGVDFFPSAVGEKPEAIAADAIDWAKRHYHDVLLVDTAGRLAIDE 199 Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 +MA I KRL HA P L V+DA GQ+A+ + F+ TG+++TK+ Sbjct: 200 EMMAEI-------KRL--HAAIDPIETLFVVDAMLGQDAVNTAKAFNEALPLTGVVLTKL 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG ARGG + + P+ F GVGE ++ LE F + ++ I G D Sbjct: 251 DGDARGGAALSVRHITGKPIKFAGVGEKLSGLEAFHPERMASRILGMGD 299 >gi|325290414|ref|YP_004266595.1| signal recognition particle subunit FFH/SRP54 (srp54) [Syntrophobotulus glycolicus DSM 8271] gi|324965815|gb|ADY56594.1| signal recognition particle subunit FFH/SRP54 (srp54) [Syntrophobotulus glycolicus DSM 8271] Length = 461 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 110/208 (52%), Gaps = 7/208 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P V+++VG+ G GKTT KL+ + G +L A D +R AAI QL++ ++ Sbjct: 99 SKPPTVVMLVGLQGAGKTTHGAKLANMLKKQGKHPLLVACDIYRPAAIKQLQVLGEQIKV 158 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V S + +A E+ A D +IIDTAGRLH N LM + + V++ Sbjct: 159 P-VFSLGQENPVKIAGESLDYAGKNGHDTVIIDTAGRLHINEELMGELEDIKAVVQ---- 213 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 PH +L V+DA TGQ+A+ E F++ +G+I++K+DG RGG I + P+ Sbjct: 214 --PHEILLVVDAMTGQDAVNVAETFNSKLALSGVILSKLDGDTRGGAAISVRSVTGCPIK 271 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 + GVGE ++ LE F + I G D Sbjct: 272 YAGVGEKMDALEVFYPDRMVSRILGMGD 299 >gi|195014137|ref|XP_001983965.1| GH16182 [Drosophila grimshawi] gi|193897447|gb|EDV96313.1| GH16182 [Drosophila grimshawi] Length = 508 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 113/226 (50%), Gaps = 8/226 (3%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 ELI K++ P KP+ + +VI+ VG+ G GKTT KL+ K L DT Sbjct: 82 ELI-KLVDPGVKPYQ-PIKGKANVIMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+ A DQ+K A + F S D +A E + + +++I+DT+GR Sbjct: 140 FRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQEGVDMFKREGFEMIIVDTSGRHKQEE 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 L +L + +P +++ V+DAT GQ Q + F +I+TK+DG Sbjct: 200 SLFE------EMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKEKVDIGSVIITKLDGH 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 A+GGG + V + P+ F+G GE I+DLEPF K F + + G D Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 299 >gi|190571419|ref|YP_001975777.1| signal recognition particle protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018818|ref|ZP_03334626.1| signal recognition particle protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357691|emb|CAQ55140.1| signal recognition particle protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995769|gb|EEB56409.1| signal recognition particle protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 447 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/296 (30%), Positives = 158/296 (53%), Gaps = 19/296 (6%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + LT+ S KL+ IIS + +RE + LI +D+ + VA+K + ++ Sbjct: 1 MFKSLTESLNSVFSKLRG--KSIISEDDFNLAMRE-IRIALIEADVSLEVAKKFINDIKD 57 Query: 73 K----RYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPH-VILVVGVNGVGKT 125 K + K VS +++ +++ L+ + S+ + + + +P VI++VG+ G GKT Sbjct: 58 KVIGEKVIKSVSPSQMII---KIVQDNLVAVLGSEKSDLNLAAKPPAVIMMVGLQGAGKT 114 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T GKL+ K+ KVMLA+ D +R AA QL++ + + I + A Sbjct: 115 TTSGKLALKLKKQKKKVMLASLDIYRPAAQKQLEVLGKQIDVQTLPVVIDEKPVTITKRA 174 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+ + DVLI+DTAGRLH ++ +M ++ +K + +P V+ V DA GQ++ Sbjct: 175 LAAAKNENYDVLILDTAGRLHIDNNMM----NELKAVKEI--ASPAEVILVADAMIGQDS 228 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + + F+ + G TG+I+T++DG ARGG + + + P+ F+ GE ++DL+ F Sbjct: 229 VNIAKSFNEIIGVTGIILTRVDGDARGGAALSMKMITDCPIKFIACGEKLSDLDDF 284 >gi|160915188|ref|ZP_02077401.1| hypothetical protein EUBDOL_01196 [Eubacterium dolichum DSM 3991] gi|158432987|gb|EDP11276.1| hypothetical protein EUBDOL_01196 [Eubacterium dolichum DSM 3991] Length = 470 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 94/316 (29%), Positives = 155/316 (49%), Gaps = 22/316 (6%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A ESLS +LTK F + + K K ++ + ++D +RE + L+ +D+ V + Sbjct: 1 MAFESLS--DRLTKAFKNITGKGK------LTEKNMNDMLRE-VRMSLLEADVNYGVVKD 51 Query: 66 IVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + + K ++V Q V+ V + I +L P N+ ++ I++VG+ Sbjct: 52 FIARIKEKALGEEVLGSLNPGQMVVKIVHDEIVDLLGSEDAPINYK-ANGITTIMMVGLQ 110 Query: 121 GVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 G GKTT K++ M K +L A D R AAI+QLK + I + A Sbjct: 111 GTGKTTASAKIANVMQKKQARKPLLVACDVVRPAAIEQLKTLGKSIGVEVFSLGIETKAL 170 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A A + A+ D +++DTAGRLH + LM + + ++ P +L +DA Sbjct: 171 DTAKAAMEYAREHGYDTVLLDTAGRLHIDDALMQELADIKSFVQ------PDDILLTVDA 224 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQ+ + FH +GL++TK+DG +RGGG++ + +PV F+G+GE I DL+ Sbjct: 225 MTGQDIVNVASSFHEQLQVSGLVVTKLDGDSRGGGVLSVRSITGVPVKFVGLGEKIEDLD 284 Query: 300 PFVAKDFSAVITGCLD 315 F + I G D Sbjct: 285 VFHPSRMADRILGMGD 300 >gi|306833449|ref|ZP_07466576.1| signal recognition particle protein [Streptococcus bovis ATCC 700338] gi|304424219|gb|EFM27358.1| signal recognition particle protein [Streptococcus bovis ATCC 700338] Length = 521 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 90/308 (29%), Positives = 157/308 (50%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L+ +I ++L + V +E+ L+ +D+ + V + ++ + + Sbjct: 3 FESLTERLQGVFKNIRGKKKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130 ++ Q+++ V+E + ++L S+ + S + P +I++VG+ G GKTT GK Sbjct: 63 HEIIDTLDPTQQIVKIVNEELTEILG--SETAELEKSPKIPTIIMMVGLQGAGKTTFAGK 120 Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187 L+ K+ D + ++ A D +R AAIDQLK + + ++G+D +A + Sbjct: 121 LANKLIKDENARPLMIAADIYRPAAIDQLKTLG--SQINVPVFDMGTDHSAVEIVTNGLA 178 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 QA+ D +IIDTAGRL + LM + +R +K L P+ +L V+D+ GQ A Sbjct: 179 QAKENHNDYVIIDTAGRLQIDEKLM----EELRDVKAL--ANPNEILLVVDSMIGQEAAN 232 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG RGG + I P+ F G GE I D+E F S Sbjct: 233 VADEFNKQLDITGVVLTKIDGDTRGGAALSIREITSKPIKFTGTGEKITDIETFHPDRMS 292 Query: 308 AVITGCLD 315 + I G D Sbjct: 293 SRILGMGD 300 >gi|242780873|ref|XP_002479687.1| signal sequence receptor alpha subunit, putative [Talaromyces stipitatus ATCC 10500] gi|218719834|gb|EED19253.1| signal sequence receptor alpha subunit, putative [Talaromyces stipitatus ATCC 10500] Length = 644 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/283 (31%), Positives = 136/283 (48%), Gaps = 40/283 (14%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101 +ED L++ ++ A ++ E EL+ K+ A SV L E + K+L P S Sbjct: 355 MEDHLMKKNVAREAALRLCEGVKQELVGKKTANFQSVDAALRSAMEASLRKILTPTSSLD 414 Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 P + + RP+VI +VGVNGVGK+T + K+ + +V++AA DTFR Sbjct: 415 LLHEIQAVTAPTAKEQAPRPYVISIVGVNGVGKSTNLSKICFFLLQNNYRVLVAACDTFR 474 Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200 S A++QL++ R + E G DAA +A +A A K DV++ID Sbjct: 475 SGAVEQLRVHV-RNLTELSARENIGEVELYEKGYGKDAANVAKDAVAYGAANKFDVVLID 533 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258 TAGR HN+ LM+ + K + P + V +A G +++ Q F+ G Sbjct: 534 TAGRRHNDQRLMSSLEKFAKFAN------PDKIFMVGEALVGTDSVMQARNFNQAFGPGR 587 Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G I++K D G L+ +V IP+ FLGVG+ DL Sbjct: 588 NLDGFIISKCDTVGDMVGTLVSMVHATSIPIVFLGVGQHYGDL 630 >gi|149184776|ref|ZP_01863094.1| signal recognition particle GTPase [Erythrobacter sp. SD-21] gi|148832096|gb|EDL50529.1| signal recognition particle GTPase [Erythrobacter sp. SD-21] Length = 499 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 91/284 (32%), Positives = 150/284 (52%), Gaps = 19/284 (6%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKML 96 VRE + ++ L+ +D+ + V ++ ++ + K +V SV Q+V+ V++ + +ML Sbjct: 27 VREAMREVRIALLEADVALPVVRRFIDAVTEKAIGSEVLKSVTPGQQVVKIVNDELVEML 86 Query: 97 M---PLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFR 151 ++P + + + +P V I++VG+ G GKTT KL K + + G K M+A+ D R Sbjct: 87 GGDGEDAEPRDLNLNAKPPVVIMMVGLQGSGKTTTTAKLGKLLREKHGKKSMMASLDVNR 146 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 AA +QLKI ++ + G +A A + A+ DVL++DTAGRLH + L Sbjct: 147 PAAQEQLKILGEQVDVATLPIMPGQQPVDIARRAMEAAKLAAADVLLLDTAGRLHVDEAL 206 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 MA + + V AP VL V+D+ TGQ+A+ + F TG+++T+MDG AR Sbjct: 207 MAEMKAISNV------SAPTEVLLVVDSLTGQDAVNVAQSFTGEVPLTGVVLTRMDGDAR 260 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 GG + + PV F G GE ++ +E F + I G D Sbjct: 261 GGAALSMRYVTGKPVKFAGTGEKLDAIEAFDPSRVAGRILGMGD 304 >gi|32266439|ref|NP_860471.1| signal recognition particle protein [Helicobacter hepaticus ATCC 51449] gi|32262490|gb|AAP77537.1| signal recognition particle protein [Helicobacter hepaticus ATCC 51449] Length = 447 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/260 (30%), Positives = 135/260 (51%), Gaps = 11/260 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 +EL+ L+++D+ ++I++E+ + + Q + + + + K+L SK + Sbjct: 30 DELKKTLLKNDVYHKAVKQIIQEVQQRTKEAGIGKQNFINALQDALSKILQS-SKSYGIS 88 Query: 107 FSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 FS P VI+++G+ G GKTT KL+ G KV+L A D R AAI+QL A Sbjct: 89 FSPTPPSVIIMMGLQGSGKTTSSAKLALYFKQKGKKVLLVACDLHRLAAIEQLTQLAQSI 148 Query: 166 SADFVC---SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 D S ++A +A EA ++A D++IID+AGRL + +LM+ + ++ R + Sbjct: 149 EVDIFTPSHSSQPNNAVYVAKEAKQKAIEAHYDIVIIDSAGRLAIDEVLMSELEEIKRAV 208 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 + L V D+ +GQ+ +R + F G G+I++K D +GG + I Sbjct: 209 ------SASECLYVADSLSGQDGIRSAQHFDDKIGIDGVILSKFDSDTKGGIALSIAYQI 262 Query: 283 KIPVYFLGVGEGINDLEPFV 302 IP+ F+G GE I D + F+ Sbjct: 263 GIPLKFIGSGEKIADFDIFI 282 >gi|171779410|ref|ZP_02920374.1| hypothetical protein STRINF_01255 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282027|gb|EDT47458.1| hypothetical protein STRINF_01255 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 519 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 90/308 (29%), Positives = 157/308 (50%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L+ +I ++L + V +E+ L+ +D+ + V + ++ + + Sbjct: 3 FESLTERLQGVFKNIRGKKKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130 ++ Q+++ V+E + ++L S+ + S + P +I++VG+ G GKTT GK Sbjct: 63 HEIIDTLDPTQQIVKIVNEELTEILG--SETAELEKSPKIPTIIMMVGLQGAGKTTFAGK 120 Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187 L+ K+ + + M+ A D +R AAIDQLK + + ++G+D +A + Sbjct: 121 LANKLIKEENARPMMIAADIYRPAAIDQLKTLG--SQINVPVFDMGTDHSAVEIVTNGLA 178 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 QA+ D +IIDTAGRL + LM + +R +K L P+ +L V+D+ GQ A Sbjct: 179 QAKENHNDYVIIDTAGRLQIDEALM----QELRDVKAL--AKPNEILLVVDSMIGQEAAN 232 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG RGG + I P+ F G GE I D+E F S Sbjct: 233 VADEFNKQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMS 292 Query: 308 AVITGCLD 315 + I G D Sbjct: 293 SRILGMGD 300 >gi|70607071|ref|YP_255941.1| signal recognition 54 kDa protein [Sulfolobus acidocaldarius DSM 639] gi|73920792|sp|O07853|SRP54_SULAC RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|68567719|gb|AAY80648.1| signal recognition 54 kDa protein [Sulfolobus acidocaldarius DSM 639] Length = 444 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/304 (28%), Positives = 147/304 (48%), Gaps = 29/304 (9%) Query: 28 LKEGITDIISSRRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV 84 L++ + + S + V E EL+ +LI++D+ V + + LT R K ++ ++ Sbjct: 5 LRDAVRKFLGSSDYEKAVNEFIKELQIILIKADVNVRLVKD-----LTDRIKKRITEEKP 59 Query: 85 LYDVSE---LIHKMLMPLSKPFNWDFSHR------PHVILVVGVNGVGKTTVIGKLSKKM 135 + + I + LS+ F D P++I++VGV G GKTT GKL+ Sbjct: 60 PSAIEKREWFISIVYDELSRLFGGDKEPEVMPKKLPYIIMLVGVQGSGKTTTSGKLALFY 119 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 G KV L A D +R AA +QL + + + +A ++ +K++ Sbjct: 120 KKKGYKVGLVAADIYRPAAYEQLIQIGQQINIPVYGEPGNKNPIEIATNGLEKFLKEKMN 179 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRL----DPHAPHSVLQVLDATTGQNALRQVEM 251 ++IIDTAGR G G+ +L+ + D P V+ V+DA+ GQ A Sbjct: 180 IVIIDTAGR--------HGYGEEASLLEEMKSMYDKIHPDEVILVIDASIGQKAYDLASR 231 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 FH + LI++KMDGTA+GGG + V+ + F+G GE +++LE F + F + + Sbjct: 232 FHQASPIGSLIVSKMDGTAKGGGALSAVIATGAQIKFIGTGEKLDELEVFNPRRFVSRLL 291 Query: 312 GCLD 315 G D Sbjct: 292 GLGD 295 >gi|228476757|ref|ZP_04061423.1| signal recognition particle protein [Streptococcus salivarius SK126] gi|228251628|gb|EEK10729.1| signal recognition particle protein [Streptococcus salivarius SK126] Length = 520 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 106/206 (51%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + M+ A D +R AAIDQLK + + Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLIKEQEARPMMIAADIYRPAAIDQLKTLGQQINVPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + A + +QA+A K D ++IDTAGRL + LM + + D Sbjct: 161 FDMGTETPAVEIVKNGLEQARANKNDYVLIDTAGRLQIDETLMQELHDI------KDFAH 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P+ +L V+D+ GQ A + F+ TG+++TK+DG RGG + I P+ F Sbjct: 215 PNEILLVVDSMIGQEAANVAKEFNEQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFT 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I D+E F S+ I G D Sbjct: 275 GTGEKITDIETFHPDRMSSRILGMGD 300 >gi|91201020|emb|CAJ74078.1| strongly similar to signal recognition particle protein [Candidatus Kuenenia stuttgartiensis] Length = 450 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/271 (32%), Positives = 137/271 (50%), Gaps = 19/271 (7%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL--YDVSELIHKMLMPL------SKPFN 104 L+ +D+ V + ++++ T+R + ++ V V +++H L+ L S PF Sbjct: 38 LLEADVNYKVVKNFIKQV-TERSVGEEVIKSVAPGQQVVKIVHDELIKLMGESDTSIPFK 96 Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 V+++VG+ G GKTT GKL++ M G K +LAA D R AA++QLK + Sbjct: 97 EGGQT---VVMLVGLQGSGKTTTAGKLARLMLSKGKKPLLAAADIQRPAAVEQLKTLGRQ 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 V E + EA K A+ DV+I+DTAGRLH ++ LM +R +K Sbjct: 154 LDIQ-VYFEKDLPPIKICSEAIKYAKENGHDVVILDTAGRLHIDNELML----ELREIK- 207 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 D P + V DA TGQ+A+ F G G+I++K+DG RGG + I Sbjct: 208 -DTLTPDQIYFVCDAMTGQDAVNSAREFDEQLGFDGVILSKLDGDTRGGAALSIRAVTGK 266 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G+GE ++ LE F ++ I G D Sbjct: 267 PIKFVGIGEKLDRLEEFHPDRMASRILGMGD 297 >gi|153008411|ref|YP_001369626.1| signal recognition particle protein [Ochrobactrum anthropi ATCC 49188] gi|151560299|gb|ABS13797.1| signal recognition particle protein [Ochrobactrum anthropi ATCC 49188] Length = 523 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 111/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GK++K++++ K V++A+ DT R AA +QL+ +TS D Sbjct: 100 PVVIMMVGLQGSGKTTTTGKIAKRLTERQRKKVLMASLDTRRPAAQEQLRQLGIQTSVDT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ DV+I+DTAGR H + LM + + + Sbjct: 160 LPIIAGQSPVEIAKRAVQAAKLGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH +L V D+ TGQ+A+ F G TG+++T+MDG RGG + + P+ + Sbjct: 214 PHEILLVADSLTGQDAVNLARNFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GE ++ LE F K + I G D Sbjct: 274 ATGEKMDALEEFYPKRIADRILGMGD 299 >gi|1850607|gb|AAB48050.1|AAB48050 Ffh [Streptococcus mutans] Length = 516 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 87/305 (28%), Positives = 149/305 (48%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L+ ++ R+L + V +E+ L+ +D+ + V ++ ++ + + Sbjct: 3 FESLTERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKEFIKRVRKRAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V Q+++ V+E + +L + S P +I++VG+ G GKTT GKL Sbjct: 63 HEVIDTLDPSQQIIKIVNEELTAVLGSETAEIEKS-SKIPTIIMMVGLQGAGKTTFAGKL 121 Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 + K+ + + ++ A D +R AAIDQLKI + + A + + QA+ Sbjct: 122 ANKLVKEENARPLMIAADIYRPAAIDQLKILGQQINVPVFDMGTEHSAVEIVSQGLAQAK 181 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + D ++IDTAGRL + LM +R +K L P+ +L V+D+ GQ A Sbjct: 182 ENRNDYVLIDTAGRLQIDEKLMT----ELRDIKAL--ANPNEILLVVDSMIGQEAANVAR 235 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG RGG + + P+ F G GE I D+E F S+ I Sbjct: 236 EFNQQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSRI 295 Query: 311 TGCLD 315 G D Sbjct: 296 LGMGD 300 >gi|124268404|ref|YP_001022408.1| signal recognition particle subunit FFH/SRP54 (srp54) [Methylibium petroleiphilum PM1] gi|124261179|gb|ABM96173.1| signal recognition particle subunit FFH/SRP54 (srp54) [Methylibium petroleiphilum PM1] Length = 457 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 108/208 (51%), Gaps = 6/208 (2%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 + P VIL+ G+ G GKTT KL++ + KV+ +GD +R AAI+QLK + A Sbjct: 98 TQPPAVILMAGLQGAGKTTTTAKLARHLIGRKKKVLTVSGDVYRPAAIEQLKTVTQQAGA 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 ++ S+ +A A A+ DVL++DTAGRL + +MA I + L Sbjct: 158 EWFPSQASDQPVDIALAAVDYAKKHYFDVLLVDTAGRLAIDEAMMAEIRALHAALN---- 213 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P L V+DA GQ+A+ + F TG+++TK+DG +RGG + + P+ Sbjct: 214 --PIETLFVVDAMQGQDAINVAKAFKEALPLTGIVLTKLDGDSRGGAALSVRQVTGAPIK 271 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F GV E I+ LE F A+ + + G D Sbjct: 272 FAGVSEKIDGLELFDAERHAGRVLGMGD 299 >gi|168701266|ref|ZP_02733543.1| signal recognition particle protein [Gemmata obscuriglobus UQM 2246] Length = 481 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/284 (30%), Positives = 141/284 (49%), Gaps = 19/284 (6%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI--- 92 +++ + DG+RE + + +D+ VA + + K +DV + RV D SE I Sbjct: 22 LTAENVKDGLRE-VRRAFLEADVNFTVATDFIARVEAKSLGQDV-LARV--DPSEQIVKN 77 Query: 93 -HKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 ++ L+ L P + R P V+++ G+ G GKTT KL+ + K MLAA D Sbjct: 78 VYEELVALMGPVDHKIPQRADRPVVLMLCGLQGAGKTTTAAKLALTLKGQNRKPMLAAAD 137 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 R A++QL+ ++ V SE ++ + A QA+ D +I+DTAGRL + Sbjct: 138 LQRPGAVEQLRTLGEQIGVP-VYSE-ATNPVDVCRNAVAQAKKTLCDCVILDTAGRLQID 195 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM + ++ +++K P V+DA GQ A + F+ I+TK+DG Sbjct: 196 DALMDELKRIDKLVK------PDECYLVVDAMIGQEAANVAKTFNDALELNACILTKLDG 249 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 ARGG + I +P+ F+G+GE ++ LE FV + + I G Sbjct: 250 DARGGAALSIKGVTGVPIKFVGMGEKVDKLEDFVPERMAGRILG 293 >gi|160933328|ref|ZP_02080716.1| hypothetical protein CLOLEP_02173 [Clostridium leptum DSM 753] gi|156867205|gb|EDO60577.1| hypothetical protein CLOLEP_02173 [Clostridium leptum DSM 753] Length = 456 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 87/306 (28%), Positives = 155/306 (50%), Gaps = 19/306 (6%) Query: 20 GFASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75 F S KL + S +L + V+E + ++ L+ +D+ VA+ +++ + Sbjct: 2 AFDGLSEKLSAAFKRLRSKGKLSESDVKEAMREVRLALLEADVNYKVAKDFTQKVTERAV 61 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +V Q V+ V+E + +++ + N+ S P V+++ G+ G GKTT K Sbjct: 62 GSEVMESLTPAQMVIKIVNEELTELMGGTNARLNFP-SKPPLVLMMCGLQGSGKTTHSAK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-AAALAYEAFKQA 189 L + + G + +L A D +R AAI QL++ ++ A ++G++ +A A A Sbjct: 121 LGRLLKSQGHRPLLVACDIYRPAAIQQLEVVGNK--AGVPVFQMGTENPVKIAQAAVAHA 178 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DV+I+DTAGRLH + LM + + ++ P +L V+DA TGQ+A+ Sbjct: 179 KDHGNDVVILDTAGRLHIDEDLMTELKNIKNKVE------PQEILLVVDAMTGQDAVNVA 232 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ + +G+I+TK+DG RGG + + P+ F G+GE + DLE F ++ Sbjct: 233 KSFNDLLEISGVILTKLDGDTRGGAALSVRAVTGKPIKFSGIGEKLEDLEAFHPDRMASR 292 Query: 310 ITGCLD 315 I G D Sbjct: 293 ILGMGD 298 >gi|2231060|emb|CAA73234.1| fifty-four homologue of SRP54 [Sulfolobus acidocaldarius] Length = 446 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/304 (28%), Positives = 147/304 (48%), Gaps = 29/304 (9%) Query: 28 LKEGITDIISSRRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV 84 L++ + + S + V E EL+ +LI++D+ V + + LT R K ++ ++ Sbjct: 7 LRDAVRKFLGSSDYEKAVNEFIKELQIILIKADVNVRLVKD-----LTDRIKKRITEEKP 61 Query: 85 LYDVSE---LIHKMLMPLSKPFNWDFSHR------PHVILVVGVNGVGKTTVIGKLSKKM 135 + + I + LS+ F D P++I++VGV G GKTT GKL+ Sbjct: 62 PSAIEKREWFISIVYDELSRLFGGDKEPEVMPKKLPYIIMLVGVQGSGKTTTSGKLALFY 121 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 G KV L A D +R AA +QL + + + +A ++ +K++ Sbjct: 122 KKKGYKVGLVAADIYRPAAYEQLIQIGQQINIPVYGEPGNKNPIEIATNGLEKFLKEKMN 181 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRL----DPHAPHSVLQVLDATTGQNALRQVEM 251 ++IIDTAGR G G+ +L+ + D P V+ V+DA+ GQ A Sbjct: 182 IVIIDTAGR--------HGYGEEASLLEEMKSMYDKIHPDEVILVIDASIGQKAYDLASR 233 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 FH + LI++KMDGTA+GGG + V+ + F+G GE +++LE F + F + + Sbjct: 234 FHQASPIGSLIVSKMDGTAKGGGALSAVIATGAQIKFIGTGEKLDELEVFNPRRFVSRLL 293 Query: 312 GCLD 315 G D Sbjct: 294 GLGD 297 >gi|15675165|ref|NP_269339.1| putative signal recognition particle [Streptococcus pyogenes M1 GAS] gi|13622328|gb|AAK34060.1| putative signal recognition particle [Streptococcus pyogenes M1 GAS] Length = 519 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/308 (28%), Positives = 157/308 (50%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L++ I ++L + V +E+ L+ +D+ + V + ++ + + Sbjct: 3 FESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130 ++ Q++L V+E + +L S+ D S + P +I++VG+ G GKTT GK Sbjct: 63 HEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTTFAGK 120 Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187 L+ K+ + + ++ A D +R AAIDQLK + + ++G+D +A + + + Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVRKGLE 178 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 QA+ D ++IDTAGRL + LM + R +K L P+ +L V+D+ GQ A Sbjct: 179 QARENHNDYVLIDTAGRLQIDEKLMGEL----RDVKAL--AQPNEILLVVDSMIGQEAAN 232 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 F+ TG+++TK+DG RGG + + P+ F G+GE I D+E F S Sbjct: 233 VAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRMS 292 Query: 308 AVITGCLD 315 + I G D Sbjct: 293 SRILGMGD 300 >gi|169342711|ref|ZP_02863752.1| signal recognition particle protein [Clostridium perfringens C str. JGS1495] gi|169299217|gb|EDS81287.1| signal recognition particle protein [Clostridium perfringens C str. JGS1495] Length = 452 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 83/270 (30%), Positives = 137/270 (50%), Gaps = 16/270 (5%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V +K + + K ++V Q+V+ V++ + ++ + Sbjct: 39 LLEADVNFKVVKKFISNVKDKCVGEEVLNSLTPGQQVIKIVNDELTTLMGETESKLKYS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 + P V ++VG+ G GKTT+ GKL+ + K +L A D +R AAI QL++ + Sbjct: 98 DNGPTVFMLVGLQGAGKTTMAGKLALHLRKKNKKPLLVACDIYRPAAIKQLQVVGKQI-- 155 Query: 168 DFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 D +G A +A A + A+ +V+IIDTAGRLH + LM + + V Sbjct: 156 DIPVFSMGDKVKAVDIAKAAIEHAKDNGNNVVIIDTAGRLHIDEDLMQELKDVKEV---- 211 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P +L V+DA TGQ+A+ E F+ +G+I+TK+DG RGG + I P Sbjct: 212 --SNPSEILLVVDAMTGQDAVNVAETFNNSLDLSGIILTKLDGDTRGGAALSIRDITGKP 269 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F+GVGE ++D+E F ++ I G D Sbjct: 270 IKFVGVGEKMSDIEVFHPDRMASRILGMGD 299 >gi|126465672|ref|YP_001040781.1| signal recognition particle subunit FFH/SRP54 (srp54) [Staphylothermus marinus F1] gi|171769996|sp|A3DML3|SRP54_STAMF RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|126014495|gb|ABN69873.1| signal recognition particle subunit FFH/SRP54 (srp54) [Staphylothermus marinus F1] Length = 441 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 71/203 (34%), Positives = 103/203 (50%), Gaps = 6/203 (2%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 V+L+VG+ G GKTT KL+ G +V L A DT+R AA DQLK ++ Sbjct: 99 VMLLVGLQGSGKTTTAAKLAYYYKLEGYRVGLVAADTYRPAAYDQLKQLGEQIGVPVYGE 158 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 DA +A + ++ D++I+DTAGR H L+ + ++ +K P Sbjct: 159 PDNKDAVEIARRGVEYFVSRGFDIVIVDTAGRHHREEDLLREMREIAENIK------PDE 212 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 V+ V+DA GQ A + FH +I+TK+DGTA+GGG + V + F+G G Sbjct: 213 VVLVIDAAIGQQAHDLAKKFHEATPIGSIIVTKLDGTAKGGGALSAVAVTGATIKFIGTG 272 Query: 293 EGINDLEPFVAKDFSAVITGCLD 315 E I++LE F F A I G D Sbjct: 273 EKIDELEVFRPPRFVARILGIGD 295 >gi|313218053|emb|CBY41387.1| unnamed protein product [Oikopleura dioica] Length = 502 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 87/291 (29%), Positives = 138/291 (47%), Gaps = 29/291 (9%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 L K L E +I ++L DGV++++ DL +IG L KR Sbjct: 28 LKKCLKDVQSALLEADVNIKLVKQLTDGVKKQI-DL---DNIGTG---------LNKRRV 74 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKM 135 +V + L + + P KP W + R VI+ VG+ G GKTT KL+ Sbjct: 75 IQTAVYKELCRICD-------PGVKP--WKPTKGRSSVIMFVGLQGSGKTTSCIKLAYHY 125 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 G K + DTFR+ A DQ+K + F S D A +AY+ + + +K D Sbjct: 126 QKKGWKCAVVCADTFRAGAYDQVKQNCTKARIPFYGSLTEPDPAVIAYDGVETFKKEKFD 185 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 ++I+DT+GR L +M++V ++ P +++ V+DA+ GQ Q + F Sbjct: 186 IIIVDTSGRHKQEDSLFE---EMLQVNNAVE---PDNIIFVMDASIGQACESQAKAFKDQ 239 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +I+TK+D A+GGG + + + P+ F+G GE I++LEPF F Sbjct: 240 VDVGSVIITKLDSHAKGGGALSAIAATQSPIVFIGTGEHIDELEPFETTKF 290 >gi|310791224|gb|EFQ26753.1| SRP54-type protein [Glomerella graminicola M1.001] Length = 663 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 90/282 (31%), Positives = 143/282 (50%), Gaps = 33/282 (11%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLM 97 RL +GV +EL L +++ ++ KI + A + S+ ++L S +L+ ++ Sbjct: 388 RLCEGVEKEL--LGVKTGSFESINAKI-------QAAMEASLTKMLTPTSSLDLLREIDA 438 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 + P RP+VI +VGVNGVGK+T + K+ + KV++AAGDTFRS A++Q Sbjct: 439 ITAPPATSLRRARPYVISIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVEQ 498 Query: 158 LKIWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 L + R + E G DAA +A +A A + DV++IDTAGR HN Sbjct: 499 LAVHV-RNLKELTVREGGHVELYQKGYGKDAATVARDAVSHAAQEGFDVVLIDTAGRRHN 557 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT----GLIM 263 + LM+ + K + + P +L V +A G +++ Q F+A G G I+ Sbjct: 558 DQRLMSSLEKFAKFAQ------PDKILMVGEALVGTDSVAQARNFNAAFGAVRTLDGFII 611 Query: 264 TKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 +K D G L+ +V +PV F+GVG+ +DL F K Sbjct: 612 SKCDTVGNMVGTLVSLVHATNVPVLFVGVGQHYSDLRNFSVK 653 >gi|293363907|ref|ZP_06610643.1| signal recognition particle protein [Mycoplasma alligatoris A21JP2] gi|292552397|gb|EFF41171.1| signal recognition particle protein [Mycoplasma alligatoris A21JP2] Length = 448 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 119/230 (51%), Gaps = 10/230 (4%) Query: 90 ELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLA 145 +++H+ L+ + +K +P+VI+++G+ G GKTT KLS + A K ++ Sbjct: 76 KIVHEELIRVLGNKVVELKIEKKPYVIMMIGLQGSGKTTATTKLSYYFRKKHAIEKPLVV 135 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 A D +R AA+DQL A D+ + + A + K+A K D++IIDTAGRL Sbjct: 136 AADIYRPAAVDQLVTLAKSIQVDYYEEGVKNSAENIVTNGLKKAHENKNDLVIIDTAGRL 195 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 + L+ + + ++ K P +L V DA +GQ+ + + FH TG I+TK Sbjct: 196 AIDENLVVELENIKKIAK------PDEILFVADALSGQDIINVAQTFHDRLKLTGSIITK 249 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +D ARGG + I +P+ F+G GE +++L+ F + I G D Sbjct: 250 LDSDARGGAALSIRQVLNLPIRFIGTGEKVSNLDLFYPDRMADRILGMGD 299 >gi|289550983|ref|YP_003471887.1| Signal recognition particle, subunit Ffh SRP54 [Staphylococcus lugdunensis HKU09-01] gi|315658478|ref|ZP_07911350.1| signal recognition particle protein [Staphylococcus lugdunensis M23590] gi|289180515|gb|ADC87760.1| Signal recognition particle, subunit Ffh SRP54 [Staphylococcus lugdunensis HKU09-01] gi|315496807|gb|EFU85130.1| signal recognition particle protein [Staphylococcus lugdunensis M23590] Length = 455 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 108/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT GKL+ M K ML AGD +R AAIDQL+ + Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAGDIYRPAAIDQLQTVGKQLDVPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + A K A+ + +D +IIDTAGRLH + LM + ++ + K Sbjct: 161 YSEGDQVKPQQIVENALKHAKEEHLDFVIIDTAGRLHIDEALMNELQEVKAISK------ 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P V+ V+DA TGQ+A+ + F TG+ +TK+DG RGG + I + P+ F+ Sbjct: 215 PDEVMLVVDAMTGQDAVNVAQSFDEQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFV 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+ E ++ LE F + ++ I G D Sbjct: 275 GMSEKMDGLELFHPERMASRILGMGD 300 >gi|195441672|ref|XP_002068627.1| GK20323 [Drosophila willistoni] gi|194164712|gb|EDW79613.1| GK20323 [Drosophila willistoni] Length = 508 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 113/226 (50%), Gaps = 8/226 (3%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 ELI K++ P KP+ + +VI+ VG+ G GKTT KL+ K L DT Sbjct: 82 ELI-KLVDPGVKPYQ-PVKGKANVIMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+ A DQ+K A + F S D +A E + + +++I+DT+GR Sbjct: 140 FRAGAYDQIKQNATKARIPFYGSYTEIDPVVIAQEGVDMFKREGFEMIIVDTSGRHKQEE 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 L +L + +P +++ V+DAT GQ Q + F +I+TK+DG Sbjct: 200 SLFE------EMLAVANAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGH 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 A+GGG + V + P+ F+G GE I+DLEPF K F + + G D Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 299 >gi|85057345|ref|YP_456261.1| signal recognition particle, subunit FFH/SRP54 [Aster yellows witches'-broom phytoplasma AYWB] gi|84789450|gb|ABC65182.1| signal recognition particle, subunit FFH/SRP54 [Aster yellows witches'-broom phytoplasma AYWB] Length = 456 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/264 (31%), Positives = 137/264 (51%), Gaps = 31/264 (11%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKMLMPLSKPFNWD 106 L+ SD+ + V K E++ K+ K Q VL ++ ++++K L+ + D Sbjct: 37 LVESDVHLQVIDKF-NEIIEKKTLK----QEVLKGLNNKEHIIKIVNKTLIQILGSTRVD 91 Query: 107 FSHRPHV----ILVVGVNGVGKTTVIGKLS----KKMSDAGLKVMLAAGDTFRSAAIDQL 158 + +P+ ++++G+ G GKTT GKL+ KK S KV+L A D +R AI+QL Sbjct: 92 LTFKPNCNLNTLMLIGLQGSGKTTTAGKLALWLRKKNSK---KVLLVACDIYRPGAIEQL 148 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 K+ + + D V S++ +D + K A + D +IIDTAGRL + +M Sbjct: 149 KVIGKQINID-VFSKLDADVLDIVDAGLKHASQEGYDAVIIDTAGRLDTDETMM------ 201 Query: 219 IRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + L+++ A P +L V+D +GQ + + FH G TG+I+TKMD +GG + Sbjct: 202 -QELQQIKAKADPSEILLVVDCLSGQQSANTAQSFHNQLGATGVILTKMDADTKGGAALS 260 Query: 278 IVVTHKIPVYFLGVGEGINDLEPF 301 + +P+ F+ E I+ LEPF Sbjct: 261 VRAMTDLPLKFVSSSEKIDSLEPF 284 >gi|322391775|ref|ZP_08065240.1| signal recognition particle protein [Streptococcus peroris ATCC 700780] gi|321145255|gb|EFX40651.1| signal recognition particle protein [Streptococcus peroris ATCC 700780] Length = 521 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 112/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEEDARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QA+A D ++IDTAGRL + +LM +R +K L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVIDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F ++ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMASRILGMGD 300 >gi|152965364|ref|YP_001361148.1| signal recognition particle protein [Kineococcus radiotolerans SRS30216] gi|151359881|gb|ABS02884.1| signal recognition particle protein [Kineococcus radiotolerans SRS30216] Length = 521 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/313 (28%), Positives = 150/313 (47%), Gaps = 28/313 (8%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 FA+ S +L + RL D E+ L+ +D+ + V ++ + + Sbjct: 2 FATLSDRLTATFKSLRGKGRLTEADVDATVREIRRALLDADVALPVVREFTSRIRERATG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V Q+V+ V+E + +L ++ + + P VI++ G+ G GKTT+ GKL Sbjct: 62 AEVQQNLNPAQQVVKIVNEELVAILGGETRRLRFS-KNPPTVIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188 + + G + +L A D R A++QL+I +R D E G+ D ++A + + Sbjct: 121 GRHLKQNGNRPLLVACDLQRPNAVNQLQITGERAGVDVFAPEPGNGVGDPVSVARQGLEH 180 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNA 245 A+ DV+++DTAGR ++ +M + +D A P VL VLDA GQ+A Sbjct: 181 ARHHHYDVVVVDTAGRTGVDAEMMQ---------QAIDIRAAVTPDEVLFVLDAMVGQDA 231 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + E F G G+++TK+DG ARGG + + PV F GE ++D E F Sbjct: 232 VATAEAFRDGVGFDGVVLTKLDGDARGGAALSVRQVTGQPVMFASTGEKLDDFELFHPDR 291 Query: 306 FSAVITGCLDYGE 318 ++ I LD G+ Sbjct: 292 MASRI---LDMGD 301 >gi|198432537|ref|XP_002131641.1| PREDICTED: similar to signal recognition particle 54 [Ciona intestinalis] Length = 497 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 67/197 (34%), Positives = 102/197 (51%), Gaps = 6/197 (3%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P+VI+ VG+ G GKTT KL+ K L DTFR+ A DQLK A + F Sbjct: 100 KPNVIMFVGLQGSGKTTTCTKLAYYYQRKNWKTCLICADTFRAGAFDQLKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S +D +A E + + + +++I+DT+GR L +M++V + A Sbjct: 160 YGSYTEADPVVIASEGVETFKEENFEIIIVDTSGRHKQEDSLFE---EMLQVYNAV---A 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P +V+ V+DA+ GQ Q F +I+TK+DG A+GGG + V + P+ F+ Sbjct: 214 PDNVIFVMDASIGQACEGQARAFKEKVDVASVIVTKLDGHAKGGGALSAVAATQSPIIFI 273 Query: 290 GVGEGINDLEPFVAKDF 306 G GE I+D E F + F Sbjct: 274 GTGEHIDDFEMFKTQPF 290 >gi|125980516|ref|XP_001354282.1| GA18336 [Drosophila pseudoobscura pseudoobscura] gi|195167799|ref|XP_002024720.1| GL22620 [Drosophila persimilis] gi|54642588|gb|EAL31335.1| GA18336 [Drosophila pseudoobscura pseudoobscura] gi|194108125|gb|EDW30168.1| GL22620 [Drosophila persimilis] Length = 508 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 115/226 (50%), Gaps = 8/226 (3%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 ELI K++ P KP+ + ++I+ VG+ G GKTT KL+ K L DT Sbjct: 82 ELI-KLVDPGVKPYQ-PIKGKANIIMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+ A DQ+K A + F S D +A E + + +++I+DT+GR Sbjct: 140 FRAGAYDQIKQNATKARIPFYGSYTEIDPVVIAQEGVDMFKREGFEMIIVDTSGRHKQEE 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 L +M+ V ++P +++ V+DAT GQ Q + F +I+TK+DG Sbjct: 200 SLFE---EMLAVANAVNPD---NIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGH 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 A+GGG + V + P+ F+G GE I+DLEPF K F + + G D Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 299 >gi|320546729|ref|ZP_08041040.1| signal recognition particle protein [Streptococcus equinus ATCC 9812] gi|320448608|gb|EFW89340.1| signal recognition particle protein [Streptococcus equinus ATCC 9812] Length = 521 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 92/308 (29%), Positives = 159/308 (51%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L+ +I ++L + V +E+ L+ +D+ + V + ++ + + Sbjct: 3 FESLTERLQGVFKNIRGKKKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130 ++ Q+++ V+E + ++L S+ + S + P +I++VG+ G GKTT GK Sbjct: 63 HEIIDTLDPTQQIVKIVNEELTEILG--SETAELEKSPKIPTIIMMVGLQGAGKTTFAGK 120 Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L+ K+ + + M+ A D +R AAIDQLK + + ++G+D +A+ A Sbjct: 121 LANKLIKEEKARPMMIAADIYRPAAIDQLKTLG--SQINVPVFDMGTDHSAVEIVTHGLA 178 Query: 190 QAKKV--DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 QAK+ D +IIDTAGRL + LM + +R +K L P+ +L V+D+ GQ A Sbjct: 179 QAKENHNDYVIIDTAGRLQIDEALM----QELRDVKAL--AKPNEILLVVDSMIGQEAAN 232 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG RGG + I P+ F G GE I D+E F S Sbjct: 233 VADEFNKQLDITGIVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMS 292 Query: 308 AVITGCLD 315 + I G D Sbjct: 293 SRILGMGD 300 >gi|294787392|ref|ZP_06752645.1| signal recognition particle protein [Parascardovia denticolens F0305] gi|315227040|ref|ZP_07868827.1| signal recognition particle protein [Parascardovia denticolens DSM 10105] gi|294484748|gb|EFG32383.1| signal recognition particle protein [Parascardovia denticolens F0305] gi|315119490|gb|EFT82623.1| signal recognition particle protein [Parascardovia denticolens DSM 10105] Length = 544 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 93/328 (28%), Positives = 156/328 (47%), Gaps = 38/328 (11%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S +LT F + K K +DI DG E+ L+ +D+ + V + + Sbjct: 6 SLTDRLTGAFKNLRSKGKLTESDI-------DGTIREIRRALLDADVSLDVVKSFTARVR 58 Query: 72 TKRYAKDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 + ++V+ Q+V+ V++ + ++L + +P N+ + P +I++ G+ G GKT Sbjct: 59 ERALGEEVNKALNPAQQVVSIVNDELTQILGAGVDRPLNF-AKNPPTIIMLAGLQGAGKT 117 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------- 175 T+ GKL + D G +L A D R A+ QL++ +R E+G Sbjct: 118 TLAGKLGYWLKDLGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPELGVQSSSSDVVS 177 Query: 176 -----SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 D +A + + A+ K D +IIDTAGRL + LM K R ++ D P Sbjct: 178 PGQATGDPVKVARGSIEVAKQKLYDAVIIDTAGRLGVDEELM----KQARDIR--DAVHP 231 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 + +L V+DA GQ+A+R + F TG++++K+DG ARGG + + P+ F Sbjct: 232 NEILFVIDAMIGQDAVRTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFSS 291 Query: 291 VGEGINDLEPFVAKDFSAVITGCLDYGE 318 GEG+ D E F ++ I LD G+ Sbjct: 292 TGEGLKDFEVFHPDRMASRI---LDMGD 316 >gi|329891279|ref|ZP_08269622.1| signal recognition particle protein [Brevundimonas diminuta ATCC 11568] gi|328846580|gb|EGF96144.1| signal recognition particle protein [Brevundimonas diminuta ATCC 11568] Length = 507 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 84/289 (29%), Positives = 146/289 (50%), Gaps = 19/289 (6%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87 +S + +++ +RE + L+ +D+ + V + + T ++V V +++YD Sbjct: 22 LSEKDVEEALRE-VRVALLEADVALPVVKDFIARAKTAATGEEVIRAVKPADQVVKIVYD 80 Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAA 146 L+ + P N + + P V+L+ G+ G GKTT KL+ ++S KVM+A+ Sbjct: 81 --GLVEMLGGEEPVPLNTNATP-PAVVLMAGLQGSGKTTTSAKLALRLSKFDKKKVMMAS 137 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 DT R AA++QL + + G A + A + A+ + DVLI+DTAGR+ Sbjct: 138 LDTRRPAAMEQLATLGQQIEVATLPIVAGESAVQITRRALQSAKLQGFDVLILDTAGRIT 197 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + LM + ++ + K P L V D+ TGQ+A+R FH TGL++T+ Sbjct: 198 LDEGLMNEVAEVAEIAK------PVETLLVADSLTGQDAVRTAAAFHERLPLTGLVLTRA 251 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG RGG ++ + +P+ +LG GE ++ L+ F A+ + I G D Sbjct: 252 DGDGRGGAMLSMRAVTGLPIKYLGAGEKVDALDVFDARRVAGRILGQGD 300 >gi|187736626|ref|YP_001878738.1| signal recognition particle protein [Akkermansia muciniphila ATCC BAA-835] gi|187426678|gb|ACD05957.1| signal recognition particle protein [Akkermansia muciniphila ATCC BAA-835] Length = 479 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 106/206 (51%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P I+VVG+NG GKTT KL+ ++ + G + +L A D R AA+DQL A++ Sbjct: 98 PARIMVVGLNGAGKTTTSAKLALRLKNEGRRPLLVACDLVRPAAVDQLATLAEQIGVPVY 157 Query: 171 CSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 GS D A+A EA + A+ + V+I DTAGR + L+ + ++ L + Sbjct: 158 KPAPGSRDVVAVAREALEWARTQNGTVMIFDTAGRQEVDEALIDELRQLHAFL------S 211 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V DA TGQ A+ + F TG+++TK+DG ARGG + + P+ F Sbjct: 212 PRETLLVADAATGQQAVNVAQTFDRAVNVTGIVLTKLDGDARGGAALSMRSVTGKPIKFS 271 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE ++ PFV + I G D Sbjct: 272 GEGEKLDQFGPFVPGRMADRILGMGD 297 >gi|18310695|ref|NP_562629.1| signal recognition particle protein [Clostridium perfringens str. 13] gi|110800465|ref|YP_696400.1| signal recognition particle protein [Clostridium perfringens ATCC 13124] gi|110802935|ref|YP_699000.1| signal recognition particle protein [Clostridium perfringens SM101] gi|168207936|ref|ZP_02633941.1| signal recognition particle protein [Clostridium perfringens E str. JGS1987] gi|168210654|ref|ZP_02636279.1| signal recognition particle protein [Clostridium perfringens B str. ATCC 3626] gi|168214190|ref|ZP_02639815.1| signal recognition particle protein [Clostridium perfringens CPE str. F4969] gi|182625861|ref|ZP_02953627.1| signal recognition particle protein [Clostridium perfringens D str. JGS1721] gi|18145376|dbj|BAB81419.1| signal recognition particle protein [Clostridium perfringens str. 13] gi|110675112|gb|ABG84099.1| signal recognition particle protein [Clostridium perfringens ATCC 13124] gi|110683436|gb|ABG86806.1| signal recognition particle protein [Clostridium perfringens SM101] gi|170660749|gb|EDT13432.1| signal recognition particle protein [Clostridium perfringens E str. JGS1987] gi|170711297|gb|EDT23479.1| signal recognition particle protein [Clostridium perfringens B str. ATCC 3626] gi|170714291|gb|EDT26473.1| signal recognition particle protein [Clostridium perfringens CPE str. F4969] gi|177908895|gb|EDT71387.1| signal recognition particle protein [Clostridium perfringens D str. JGS1721] Length = 452 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 83/270 (30%), Positives = 137/270 (50%), Gaps = 16/270 (5%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V +K + + K ++V Q+V+ V++ + ++ + Sbjct: 39 LLEADVNFKVVKKFISNVKDKCVGEEVLNSLTPGQQVIKIVNDELTTLMGETESKLKYS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 + P V ++VG+ G GKTT+ GKL+ + K +L A D +R AAI QL++ + Sbjct: 98 DNGPTVFMLVGLQGAGKTTMAGKLALHLRKKNKKPLLVACDIYRPAAIKQLQVVGKQI-- 155 Query: 168 DFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 D +G A +A A + A+ +V+IIDTAGRLH + LM + + V Sbjct: 156 DIPVFSMGDKVKAVDIAKAAIEHAKDNGNNVVIIDTAGRLHIDEDLMQELKDVKEV---- 211 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P +L V+DA TGQ+A+ E F+ +G+I+TK+DG RGG + I P Sbjct: 212 --SNPSEILLVVDAMTGQDAVNVAETFNNSLDLSGIILTKLDGDTRGGAALSIRDITGKP 269 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F+GVGE ++D+E F ++ I G D Sbjct: 270 IKFVGVGEKMSDIEVFHPDRMASRILGMGD 299 >gi|71910728|ref|YP_282278.1| signal recognition particle, subunit FFH/SRP54 [Streptococcus pyogenes MGAS5005] gi|71853510|gb|AAZ51533.1| signal recognition particle, subunit FFH/SRP54 [Streptococcus pyogenes MGAS5005] Length = 520 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/308 (28%), Positives = 157/308 (50%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L++ I ++L + V +E+ L+ +D+ + V + ++ + + Sbjct: 3 FESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130 ++ Q++L V+E + +L S+ D S + P +I++VG+ G GKTT GK Sbjct: 63 HEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTTFAGK 120 Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187 L+ K+ + + ++ A D +R AAIDQLK + + ++G+D +A + + + Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVRKGLE 178 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 QA+ D ++IDTAGRL + LM + R +K L P+ +L V+D+ GQ A Sbjct: 179 QARENHNDYVLIDTAGRLQIDEKLMGEL----RDVKAL--AQPNEILLVVDSMIGQEAAN 232 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 F+ TG+++TK+DG RGG + + P+ F G+GE I D+E F S Sbjct: 233 VAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRMS 292 Query: 308 AVITGCLD 315 + I G D Sbjct: 293 SRILGMGD 300 >gi|308234553|ref|ZP_07665290.1| signal recognition particle protein [Atopobium vaginae DSM 15829] gi|328944151|ref|ZP_08241616.1| signal recognition particle protein [Atopobium vaginae DSM 15829] gi|327492120|gb|EGF23894.1| signal recognition particle protein [Atopobium vaginae DSM 15829] Length = 493 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 148/305 (48%), Gaps = 18/305 (5%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELL 71 F++ S +L+E + +S R ++D +RE + L+ +D+ V + V E+ L Sbjct: 2 FSNLSDRLQETFAHLRGKGKLSERDINDAMRE-IRMALLEADVNYRVVKDFVATCKEKCL 60 Query: 72 TKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 T + +S Q V+ V E + +L + PH+I++ G+ G GKTT K Sbjct: 61 TADILQSLSAAQNVVAVVLEELTALLGTTESKLTFSPHRTPHIIMLCGLQGSGKTTAAAK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + G +LAA DT R AA DQL+ + + G++A +A EA + A Sbjct: 121 LAYLLKSQGHAPLLAACDTHRPAAADQLQTLGEEIGVRVYRGD-GANAIRVAQEAVQDAI 179 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DV+I+DTAGRL + +M + +K P +L V+DA GQ+ + V+ Sbjct: 180 DNLKDVVIVDTAGRLQIDEEMMQEAIDIKHAVK------PEQILMVVDAMAGQDIVNVVQ 233 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G+IM+K+DG ARGGG + + P+ F+ +GE + LE F + I Sbjct: 234 EFSKRLDFDGVIMSKLDGDARGGGALSVREVTGKPIKFVSMGEKPSSLEVFHPDRMAKRI 293 Query: 311 TGCLD 315 G D Sbjct: 294 LGMGD 298 >gi|315427553|dbj|BAJ49153.1| signal recognition particle subunit SRP54 [Candidatus Caldiarchaeum subterraneum] Length = 466 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 91/308 (29%), Positives = 146/308 (47%), Gaps = 24/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRYA 76 F+S LKE ++S D EEL + L+ +D+ V + QKI E + + + Sbjct: 27 FSSMGRSLKEVFRKFLASPSADKSSVEELVRGIQRSLLMADVRVELVQKISERIRARAFE 86 Query: 77 KDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTV 127 + + SV +++Y+ ELI+ + KP + +P+V++++G+ G GKTT Sbjct: 87 EKLPPGVSRKDSVAKIVYE--ELINLLG---GKPAQFSTGGKKPYVVMLLGIQGTGKTTT 141 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 KL+ + G KV + DT+R AA QLK + ++ +A + + Sbjct: 142 AAKLANYLKVGGYKVGVVCADTYRPAAYQQLKHLLEPRQIPVYGEPENNNPVEIARKGLE 201 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 + VDV+IIDTAGR LM + + + LK P + V+D T GQ A Sbjct: 202 HFKQMGVDVVIIDTAGRHRQQESLMDEMKMLEKELK------PDENILVIDGTIGQQAGA 255 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 FH +I+TK+D + RGGG + V P+ F+GVGE + D +PF + Sbjct: 256 HAAAFHKATPVGSIIITKLDTSGRGGGALAAVAETGAPIKFVGVGESVEDFQPFNPSSYI 315 Query: 308 AVITGCLD 315 A + G D Sbjct: 316 ASLLGMPD 323 >gi|315425555|dbj|BAJ47216.1| signal recognition particle subunit SRP54 [Candidatus Caldiarchaeum subterraneum] Length = 466 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 91/308 (29%), Positives = 146/308 (47%), Gaps = 24/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRYA 76 F+S LKE ++S D EEL + L+ +D+ V + QKI E + + + Sbjct: 27 FSSMGRSLKEVFRKFLASPSADKSSVEELVRGIQRSLLMADVKVELVQKISERIRARAFE 86 Query: 77 KDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTV 127 + + SV +++Y+ ELI+ + KP + +P+V++++G+ G GKTT Sbjct: 87 EKLPPGVSRKDSVAKIVYE--ELINLLG---GKPAQFSTGGKKPYVVMLLGIQGTGKTTT 141 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 KL+ + G KV + DT+R AA QLK + ++ +A + + Sbjct: 142 AAKLANYLKVGGYKVGVVCADTYRPAAYQQLKHLLEPRQIPVYGEPENNNPVEIARKGLE 201 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 + VDV+IIDTAGR LM + + + LK P + V+D T GQ A Sbjct: 202 HFKQMGVDVVIIDTAGRHRQQESLMDEMKMLEKELK------PDENILVIDGTIGQQAGA 255 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 FH +I+TK+D + RGGG + V P+ F+GVGE + D +PF + Sbjct: 256 HAAAFHKATPVGSIIITKLDTSGRGGGALAAVAETGAPIKFVGVGESVEDFQPFNPSSYI 315 Query: 308 AVITGCLD 315 A + G D Sbjct: 316 ASLLGMPD 323 >gi|150016059|ref|YP_001308313.1| signal recognition particle protein [Clostridium beijerinckii NCIMB 8052] gi|149902524|gb|ABR33357.1| signal recognition particle protein [Clostridium beijerinckii NCIMB 8052] Length = 450 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 84/268 (31%), Positives = 132/268 (49%), Gaps = 12/268 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V ++ + + +K +V Q V+ V+E + ++ N+ Sbjct: 39 LLEADVNYKVVKQFISSVSSKCVGSEVLESLTPGQHVIKIVNEELTNLMGGTESKLNYSS 98 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S VI++VG+ G GKTT+ GKL+ + K +L A D +R AAI QL++ + Sbjct: 99 SGLT-VIMLVGLQGAGKTTMCGKLALNLRKNNKKPLLVACDIYRPAAIKQLEVVGKQIEI 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +A A A+ +V+IIDTAGRLH + LM + K I+ D Sbjct: 158 PVFSMGDKVSPVEIAKNAITHAKDNGNNVVIIDTAGRLHIDEELMQEL-KNIK-----DN 211 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+DA TGQ+A+ E F+ +G+I+TK+DG RGG + I P+ Sbjct: 212 VNPSEILLVVDAMTGQDAVNVAENFNNDLDLSGVILTKLDGDTRGGAALSIKTIIDKPIK 271 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 + GVGE +ND E F ++ I G D Sbjct: 272 YAGVGEKMNDFEVFHPDRMASRILGMGD 299 >gi|307731042|ref|YP_003908266.1| signal recognition particle protein [Burkholderia sp. CCGE1003] gi|307585577|gb|ADN58975.1| signal recognition particle protein [Burkholderia sp. CCGE1003] Length = 455 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 108/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT +GKL+K + + KV+ + D +R AAI QLK ++ ADF Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 SE +A A A+ DVL++DTAGRL + +M I + LK Sbjct: 164 FPSEPDQKPVDIARAAVDWAKRHYHDVLLVDTAGRLGIDEAMMQEIAALHSTLK------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F TG+++TK+DG +RGG + + P+ F+ Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F + I G D Sbjct: 278 GVAEKLDGLEVFYPDRMANRILGMGD 303 >gi|326933220|ref|XP_003212705.1| PREDICTED: signal recognition particle receptor subunit alpha-like [Meleagris gallopavo] Length = 661 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/302 (29%), Positives = 148/302 (49%), Gaps = 41/302 (13%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96 +R+ D V E+++D LI ++ +A ++ E + K K + + V V + + + L Sbjct: 357 TRQDMDPVLEKMKDHLIAKNVAAEIAVQLCESVAKKLEGKVMGTFTTVTSTVKQALQEAL 416 Query: 97 MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + + +P + RP+V+ GVNGVGK+T + K+S + + G V++AA Sbjct: 417 VQILQPQRRVDVLRDVMDAQRHRRPYVVTFCGVNGVGKSTNLAKISFWLIENGFSVLIAA 476 Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193 DTFR+ A++QL+ R +A G DAA +A EA A+ + Sbjct: 477 CDTFRAGAVEQLRTHTRRLNALHPPESHGGRSMVQLYEKGYGKDAAGIAMEAISYARNQG 536 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252 DV+++DTAGR+ +N+ LM + K+I V +AP VL V +A G A+ Q+ F Sbjct: 537 FDVVLVDTAGRMQDNAPLMTALAKLIAV------NAPDLVLFVGEALVGNEAVDQLVKFN 590 Query: 253 -----HAVAGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 H++A T G+++TK D + G I + P+ F+G G+ DL Sbjct: 591 KALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 650 Query: 303 AK 304 AK Sbjct: 651 AK 652 >gi|323527400|ref|YP_004229553.1| signal recognition particle protein [Burkholderia sp. CCGE1001] gi|323384402|gb|ADX56493.1| signal recognition particle protein [Burkholderia sp. CCGE1001] Length = 455 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 108/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT +GKL+K + + KV+ + D +R AAI QLK ++ ADF Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 SE +A A A+ DVL++DTAGRL + +M I + LK Sbjct: 164 FPSEPDQKPVDIARAAVDWAKRHYHDVLLVDTAGRLGIDEAMMQEIAALHSTLK------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F TG+++TK+DG +RGG + + P+ F+ Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F + I G D Sbjct: 278 GVAEKLDGLEVFYPDRMANRILGMGD 303 >gi|224282424|ref|ZP_03645746.1| signal recognition particle protein [Bifidobacterium bifidum NCIMB 41171] Length = 542 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/298 (28%), Positives = 144/298 (48%), Gaps = 32/298 (10%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKML- 96 DG E+ L+ +D+ + V + + + +VS Q+V+ V+E + +L Sbjct: 24 DGTIREIRRALLDADVALDVVRSFTARIRERALGTEVSEALNPAQQVVKIVNEELTDVLG 83 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 + +P N+ + P +I++ G+ G GKTT+ GKL + D+G +L A D R A+ Sbjct: 84 QGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGKLGYWLKDSGHTPLLVAADLQRPNAVT 142 Query: 157 QLKIWADRTSADFVCSEIG----------------SDAAALAYEAFKQAQAKKVDVLIID 200 QL++ +R E G D +A ++ A+ K D +IID Sbjct: 143 QLQVVGERAGVPVYAPEKGVQSDGGDSVSAPGETSGDPVKVARDSIALAKQKLYDTVIID 202 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL + +LM + R ++ D P+ +L V+DA GQ+A++ + F TG Sbjct: 203 TAGRLGVDEVLM----QQARDIR--DAVNPNEILFVIDAMIGQDAVQTAKAFDEGVDFTG 256 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 ++++K+DG ARGG + + P+ F GEG+ D E F ++ I LD G+ Sbjct: 257 VVLSKLDGDARGGAALSVASVTGKPILFASTGEGLKDFEVFHPDRMASRI---LDMGD 311 >gi|86359537|ref|YP_471429.1| signal recognition particle GTP-binding protein [Rhizobium etli CFN 42] gi|86283639|gb|ABC92702.1| signal recognition particle GTP-binding protein [Rhizobium etli CFN 42] Length = 525 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 113/206 (54%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT K++ ++S KV++A+ DT R AA +QL+ + S D Sbjct: 100 PVVVMMVGLQGSGKTTTTAKIAHRLSTREKKKVLMASLDTRRPAAQEQLRQLGAQASIDT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ DV+I+DTAGR H + LM +M + KR +PH Sbjct: 160 LPVITGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMV---EMADIKKRSNPH- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +L V D+ TGQ+A+ F G TGL++T+MDG RGG + + P+ + Sbjct: 216 --EILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE +++LE F + + I G D Sbjct: 274 GVGEKMSELEEFHPRRIADRILGMGD 299 >gi|212716744|ref|ZP_03324872.1| hypothetical protein BIFCAT_01681 [Bifidobacterium catenulatum DSM 16992] gi|212660448|gb|EEB21023.1| hypothetical protein BIFCAT_01681 [Bifidobacterium catenulatum DSM 16992] Length = 548 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 92/324 (28%), Positives = 153/324 (47%), Gaps = 36/324 (11%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F+S + +L + S +L DG E+ L+ +D+ + V + + + Sbjct: 4 FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGRIRERALG 63 Query: 77 KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +VS Q+V+ V+E + +L + +P N+ + P +I++ G+ G GKTT+ GK Sbjct: 64 TEVSQALNPAQQVVKIVNEELTAVLGAGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 122 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175 L + D+G +L A D R A+ QL++ +R E G Sbjct: 123 LGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVASPGLT 182 Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 D +A +A A+ K D +IIDTAGRL + LM K R ++ D P+ +L Sbjct: 183 TGDPVKVARDAVALAKQKLYDTVIIDTAGRLGVDEELM----KQARDIR--DAVQPNEIL 236 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DA GQ+A++ + F TG++++K+DG ARGG + + P+ F GEG Sbjct: 237 FVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEG 296 Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318 + D E F ++ I LD G+ Sbjct: 297 LKDFEVFHPDRMASRI---LDMGD 317 >gi|284925965|gb|ADC28317.1| signal recognition particle protein [Campylobacter jejuni subsp. jejuni IA3902] Length = 445 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/271 (32%), Positives = 141/271 (52%), Gaps = 15/271 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLT--KRYAKD--VSVQRVLYDVSELIHKMLMPLSKP 102 E L+ L+++D V K+ +ELLT + AK + ++ L + + +L K Sbjct: 30 ETLKKALLKAD----VHHKVTKELLTLIEEDAKQNGIGQKQFLNAIKINLENILSVNGKN 85 Query: 103 FNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 + F+ +P V+L+ G+ G GKTT KL+ + KV++AA D R AA++QL Sbjct: 86 QGFVFASKPPTVVLMAGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLIQL 145 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 + + E D +A EA K+A++ VDVL++DTAGRL + LM +R Sbjct: 146 CEANEIELFFIENEKDPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALM----DELRA 201 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 +K D P + V DA +GQ+ ++ F+ V G +G+I++K D +GG + I Sbjct: 202 VK--DVLNPDEIFYVADAMSGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAKQ 259 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 IP+ F+GVGE + DLE F+ + I G Sbjct: 260 IGIPLRFIGVGEKVADLEVFIPDRIVSRIMG 290 >gi|62185241|ref|YP_220026.1| signal recognition particle protein [Chlamydophila abortus S26/3] gi|62148308|emb|CAH64075.1| signal recognition particle protein [Chlamydophila abortus S26/3] Length = 447 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 92/306 (30%), Positives = 155/306 (50%), Gaps = 23/306 (7%) Query: 22 ASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLTK 73 +S S KL + +++SRR+ ++ + E + ++ L+ +D+ V + K+ E++L + Sbjct: 3 SSLSQKLSSIFSSLVASRRITEENISEAIREVRLALLDADVNYHVVKSFIAKVKEKVLGE 62 Query: 74 RYAKDVS--VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K VS Q + Y EL L + + S P VIL+ G+ G GKTT KL Sbjct: 63 EVWKHVSPGQQFIRYLHEELTE----LLGDKTDLNTSGNPGVILLCGLQGTGKTTTCAKL 118 Query: 132 SKKMSDA--GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 + + + KV++ D R AA++QL+ +T A+ SE G D + +A A Sbjct: 119 AAYVLEERKAKKVLVVPCDLKRFAAVEQLRNLISKTKAELYNSE-GQDPVKVVSQALDYA 177 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + ++ D+++IDTAGRLH + +LM + + +V HA + V++ GQ+A+ Sbjct: 178 KQERHDLVLIDTAGRLHVDEVLMEELASIQKV-----SHASERLF-VMNLAMGQDAVSTA 231 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I++ DG AR G ++ + P+ F G GE I DL PF A+ + Sbjct: 232 KAFDNYLDLTGVIISMTDGDARAGAVLSMKSLLGKPIKFEGCGEKIQDLRPFNAESMADR 291 Query: 310 ITGCLD 315 I G D Sbjct: 292 ILGMGD 297 >gi|255326590|ref|ZP_05367667.1| signal recognition particle protein [Rothia mucilaginosa ATCC 25296] gi|283457889|ref|YP_003362490.1| signal recognition particle GTPase [Rothia mucilaginosa DY-18] gi|255296330|gb|EET75670.1| signal recognition particle protein [Rothia mucilaginosa ATCC 25296] gi|283133905|dbj|BAI64670.1| signal recognition particle GTPase [Rothia mucilaginosa DY-18] Length = 525 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 93/316 (29%), Positives = 148/316 (46%), Gaps = 28/316 (8%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L ++ RL D E+ L+ +D+ V V ++ + + Sbjct: 2 FNSLSDRLTATFKNLRGKGRLSEADIDATVREIRRALLDADVAVPVVREFTAHVKERALG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+++ V+E + +L ++ N S P +I++ G+ G GKTT+ GKL Sbjct: 62 AEVSEALNPSQQIVKIVNEELVSILGGSTRRINMAKSG-PTIIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------SDAAALA 182 + + G ML A D R A+ QLK+ +R G D +A Sbjct: 121 AHWLKGQGHTPMLIASDLQRPNAVTQLKVVGERAGVPVYAPHPGVTSEFDVPTGDPVQVA 180 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 + +A+AK DV+I+DTAGRL ++ LM + IR D PH VL V+DA G Sbjct: 181 RDGVAEARAKLHDVVIVDTAGRLGVDAELMQQ-ARNIR-----DAIEPHEVLFVIDAMIG 234 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 Q+A+ F+ TG++++K+DG ARGG + + P+ F GE + D E F Sbjct: 235 QDAVNTANAFNEGVDFTGVVLSKLDGDARGGAALSVASVTGKPIMFASTGENVTDFEQFH 294 Query: 303 AKDFSAVITGCLDYGE 318 ++ I LD G+ Sbjct: 295 PDRMASRI---LDMGD 307 >gi|224438372|ref|ZP_03659299.1| signal recognition particle protein [Helicobacter cinaedi CCUG 18818] gi|313144814|ref|ZP_07807007.1| signal recognition particle protein [Helicobacter cinaedi CCUG 18818] gi|313129845|gb|EFR47462.1| signal recognition particle protein [Helicobacter cinaedi CCUG 18818] Length = 447 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/273 (29%), Positives = 139/273 (50%), Gaps = 11/273 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 ++L+ L+++D+ ++I++E+ + + + Q + + E ++++L K + Sbjct: 30 DDLKKTLLKNDVYHKATKQIIQEVSQRTKSNGIGKQSFMNALQESLNEILKS-KKSYGIS 88 Query: 107 FSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 FS P VIL++G+ G GKTT KL+ + G KV+L A D R AAI+QL A Sbjct: 89 FSPTPPSVILMMGLQGSGKTTSSAKLALYLKQKGKKVLLVACDLHRLAAIEQLSQLAASI 148 Query: 166 SADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 D S +A +A EA ++A DV+IID+AGRL + LM +L Sbjct: 149 EVDIFTPNQSSKPENAVQVAKEAKQKATNTHYDVVIIDSAGRLSIDEALMQ------ELL 202 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 + D L V D+ +GQ+ +R + F+ G G+I++K D ++GG + I Sbjct: 203 EIKDSINATECLYVADSLSGQDGIRSAQNFNEKIGIDGVILSKFDSDSKGGIALSIAYQI 262 Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P+ F+G GE + D + FV + + + G D Sbjct: 263 GVPLKFIGSGEKVADFDVFVPERIISRLMGAGD 295 >gi|259503527|ref|ZP_05746429.1| signal recognition particle protein [Lactobacillus antri DSM 16041] gi|259168605|gb|EEW53100.1| signal recognition particle protein [Lactobacillus antri DSM 16041] Length = 480 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/282 (30%), Positives = 143/282 (50%), Gaps = 20/282 (7%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML 96 +RE + ++ L+ +D+ V + V+ + K +V Q+++ V++ + K++ Sbjct: 28 LRETMREIRLALLEADVNFTVVKDFVKTVREKAAGAEVLKGLNPAQQIVKIVNDELTKLM 87 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAI 155 + P N +H P VI++VG+ G GKTT GKL+ ++ + + M A D +R AAI Sbjct: 88 GEEAVPLNK-AAHIPTVIMMVGLQGAGKTTTAGKLALRLKNEDHARPMFIAADVYRPAAI 146 Query: 156 DQLKIWADRTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 QL+ A D E G+D + E + A+ D +IIDTAGRL + LM Sbjct: 147 TQLQQVA--AQIDVPVFEKGTDVDPVEIVREGMEVAKQNHNDYVIIDTAGRLQIDEQLMD 204 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + + ++ P +L V+D+ TGQNA+ + F TG+++TK+DG RGG Sbjct: 205 ELANIKELVH------PDEILLVIDSMTGQNAVNTAQGFDDKLDITGVVLTKLDGDTRGG 258 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+G GE ++DL+ F ++ I G D Sbjct: 259 AAMSIRAVTGKPIKFVGEGEKMSDLDVFHPDRMASRILGMGD 300 >gi|50955120|ref|YP_062408.1| signal recognition particle, subunit SRP54 [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951602|gb|AAT89303.1| signal recognition particle, subunit SRP54 [Leifsonia xyli subsp. xyli str. CTCB07] Length = 523 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/294 (29%), Positives = 148/294 (50%), Gaps = 21/294 (7%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + ++ + +L DG E+ L+ +D+ + V ++ + + Sbjct: 4 FGTLSDRLADTFKNLRTKGKLSPSDVDGTVREIRRALLDADVALDVVKEFTGRVRERALN 63 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGK 130 DV+ Q+V+ V+E + +L + F+ +P VI++ G+ G GKTT+ GK Sbjct: 64 DDVNKALNPAQQVVQIVNEELIGILGGEQR--RLQFAKKPPTVIMLAGLQGAGKTTLAGK 121 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187 L K + G +L A D R A++QL+I ++ E G+ + +A +A Sbjct: 122 LGKWLVKDGHTPILVAADLQRPNAVNQLQIVGEQAGVPVYAPEPGNGVGNPVKVAKDALT 181 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ K+ D ++IDTAGRL ++ LM + + K DP VL V+DA GQ+A+ Sbjct: 182 FAETKQYDTVVIDTAGRLGVDAELMK---QAADIRKATDPD---EVLFVIDAMIGQDAVA 235 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F TG++++K+DG ARGG + + P+ F GEG++D EPF Sbjct: 236 TAKAFQDGVDFTGVVLSKLDGDARGGAALSVASITGRPIIFASTGEGLDDFEPF 289 >gi|291456068|ref|ZP_06595458.1| signal recognition particle protein [Bifidobacterium breve DSM 20213] gi|291382477|gb|EFE89995.1| signal recognition particle protein [Bifidobacterium breve DSM 20213] Length = 551 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 87/307 (28%), Positives = 148/307 (48%), Gaps = 33/307 (10%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F+S + +L + S +L DG E+ L+ +D+ + V + ++ + Sbjct: 4 FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGKVRERALG 63 Query: 77 KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +VS Q+V+ V+E + +L + +P N+ + P +I++ G+ G GKTT+ GK Sbjct: 64 TEVSEALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 122 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175 L + D+G +L A D R A+ QL++ +R E G Sbjct: 123 LGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVAAPGQT 182 Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 D +A ++ + A+ K D +IIDTAGRL + LM K R ++ D P+ +L Sbjct: 183 SGDPVKVARDSIELAKQKLYDTVIIDTAGRLGVDEELM----KQARDIR--DVVQPNEIL 236 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DA GQ+A++ + F TG++++K+DG ARGG + + P+ F GEG Sbjct: 237 FVIDAMIGQDAVKTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEG 296 Query: 295 INDLEPF 301 + D E F Sbjct: 297 LKDFEVF 303 >gi|67473872|ref|XP_652685.1| Signal recognition particle receptor alpha subunit [Entamoeba histolytica HM-1:IMSS] gi|56469558|gb|EAL47298.1| Signal recognition particle receptor alpha subunit, putative [Entamoeba histolytica HM-1:IMSS] Length = 488 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/277 (29%), Positives = 140/277 (50%), Gaps = 33/277 (11%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV----QRVLYDVSELIHKMLMPLSKP 102 E++E +LI ++ +A +I + T K V V+ V+E++ +++ P S P Sbjct: 208 EKIEKMLIEKNVNSEIAAQIKNNIQTLLNGKKVDTFTLSGTVIQGVTEVLTRIMTPTS-P 266 Query: 103 FN--WDFSHRP-----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 + + S + + ++ +GVNGVGK+T + K++ ++ KVM+AA DTFR+ A+ Sbjct: 267 IDVAKEISEKKANGEVYTMVFLGVNGVGKSTSLSKMACWLTSLNYKVMIAACDTFRAGAV 326 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 DQL + A + +D +A+A A K+A+ DVL++DTAGR+ N LM I Sbjct: 327 DQLAVHAQKLGITLYEKGYDTDPSAIARNALKRAKEDGYDVLLVDTAGRMQGNDALMKAI 386 Query: 216 GKMIRVLKRLDPHAPHS--VLQVLDATTGQNALRQVEMFHAV----------AGTTGLIM 263 K++ H+ + VL V +A G +A+ Q+ F+ G G+I+ Sbjct: 387 AKLV--------HSAQTDLVLFVAEALVGNDAVNQLTTFNRYIIDYAPNKQSKGVNGIIL 438 Query: 264 TKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TK D + G I + IP+ F+G G+ DL+ Sbjct: 439 TKFDTIDDKVGAAISLTYCTGIPILFVGSGQHYTDLK 475 >gi|295666231|ref|XP_002793666.1| signal sequence receptor alpha subunit [Paracoccidioides brasiliensis Pb01] gi|226277960|gb|EEH33526.1| signal sequence receptor alpha subunit [Paracoccidioides brasiliensis Pb01] Length = 651 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 87/283 (30%), Positives = 137/283 (48%), Gaps = 40/283 (14%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101 +E+ L++ ++ A ++ E EL+ K+ A S+ L E + K+L P S Sbjct: 362 MEEHLLKKNVAREAAVRLCEGVEHELVGKKTASFQSIDSALRSAMESSLRKILTPTSSLD 421 Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 P + RP+VI +VGVNGVGK+T + K+ + +V++ A DTFR Sbjct: 422 LLREIEAVTSPSSSQRQRRPYVISIVGVNGVGKSTNLSKICFFLLQNNYRVLITACDTFR 481 Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200 S A++QL++ A R + E G DAA +A +A A A DV++ID Sbjct: 482 SGAVEQLRVHA-RNLQELSSRENVGHVGLYEKGYGKDAANVAKDAVAYATANNFDVVLID 540 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258 TAGR HN+ LM+ + K + + P + V +A G +++ Q F+ GT Sbjct: 541 TAGRRHNDQRLMSSLEKFAKFAQ------PDKIFMVGEALVGTDSVMQARNFNQAFGTGR 594 Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G I++K D G L+ +V IP+ FLG+G+ DL Sbjct: 595 GLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGIGQHYGDL 637 >gi|212526426|ref|XP_002143370.1| signal sequence receptor alpha subunit, putative [Penicillium marneffei ATCC 18224] gi|210072768|gb|EEA26855.1| signal sequence receptor alpha subunit, putative [Penicillium marneffei ATCC 18224] Length = 645 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/283 (31%), Positives = 136/283 (48%), Gaps = 40/283 (14%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101 +ED L++ ++ A ++ E EL+ K+ A SV L E + K+L P S Sbjct: 356 MEDHLMKKNVAREAALRLCEGVKQELVGKKTANFQSVDAALRTAMEASLRKILTPTSSLD 415 Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 P + RP+VI +VGVNGVGK+T + K+ + +V++AA DTFR Sbjct: 416 LLHEIQAVTAPIAKGQAPRPYVISIVGVNGVGKSTNLSKICFFLLQNNYRVLVAACDTFR 475 Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200 S A++QL++ R + E G DAA +A +A A K DV++ID Sbjct: 476 SGAVEQLRVHV-RNLTELSARENIGEVELYEKGYGKDAANVAKDAVAYGAANKFDVVLID 534 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258 TAGR HN+ LM+ + K + P + V +A G +++ Q F+ G+ Sbjct: 535 TAGRRHNDQRLMSSLEKFAKFAN------PDKIFMVGEALVGTDSVMQARNFNQAFGSGR 588 Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G I++K D G L+ +V IP+ FLGVG+ DL Sbjct: 589 NLDGFIISKCDTVGDMVGTLVSMVHATSIPIVFLGVGQHYGDL 631 >gi|330717910|ref|ZP_08312510.1| signal recognition particle protein [Leuconostoc fallax KCTC 3537] Length = 492 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/269 (28%), Positives = 129/269 (47%), Gaps = 13/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ ++ V + K D+ + Q+V+ V+E + KM+ + P N Sbjct: 39 LLEADVNYGTVKRFVANVRGKASGADILEGLDAPQQVVKIVNEELTKMMGDEAVPLNKS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P +I++ G+ G GKTT + KL+ K+ + + +L A D +R AAIDQL+I Sbjct: 98 PQIPTIIMMAGLQGAGKTTTVAKLAYKLKQENKARPLLIAADIYRPAAIDQLEILGKDLD 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 +D + ++A+ + D + IDTAGRL + +LM + + + Sbjct: 158 IPVFSLGTDTDPRDIVRAGLEEAKQHRNDYVFIDTAGRLQIDEVLMQELKDIAEIAH--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P +L +DA TGQNA + F TG+++TK+DG RGG + I P+ Sbjct: 215 ---PDEILLTVDAMTGQNATETAKGFSESLDLTGVVLTKLDGDTRGGAALSIRDVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G GE DL+ F ++ I G D Sbjct: 272 KFVGQGEKPTDLDVFYPDRMASRILGMGD 300 >gi|322376834|ref|ZP_08051327.1| signal recognition particle protein [Streptococcus sp. M334] gi|321282641|gb|EFX59648.1| signal recognition particle protein [Streptococcus sp. M334] Length = 523 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QA+A D ++IDTAGRL + +LM +R +K L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F+ TG+I+TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNTQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|319764321|ref|YP_004128258.1| signal recognition particle protein [Alicycliphilus denitrificans BC] gi|317118882|gb|ADV01371.1| signal recognition particle protein [Alicycliphilus denitrificans BC] Length = 459 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 109/209 (52%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P VIL+ G+ G GKTT KL+K + + KV+ +GD +R AAI+QLK + Sbjct: 97 AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTKQAG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 A++ S +A A A+ DVL++DTAGRL + +LM I + VL Sbjct: 157 AEWFPSSPDQKPRDIALAALDYARKHYFDVLLVDTAGRLAIDELLMQEIKDLHAVLN--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA GQ+A+ + F TG+++TK+DG +RGG + + P+ Sbjct: 214 ---PVETLFVVDAMQGQDAVNTAKAFKEALPLTGIVLTKLDGDSRGGAALSVRAITGAPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F GV E I+ LE F A+ + + G D Sbjct: 271 KFAGVSEKIDGLEVFDAQRHAGRVLGMGD 299 >gi|323127254|gb|ADX24551.1| signal recognition particle subunit FFH/SRP54 [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 520 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 89/308 (28%), Positives = 157/308 (50%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L++ I ++L + V +E+ L+ +D+ + V + ++ + + Sbjct: 3 FESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130 ++ Q++L V+E + +L S+ D S + P +I++VG+ G GKTT GK Sbjct: 63 HEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTTFAGK 120 Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD--AAALAYEAFK 187 L+ K+ + + ++ A D +R AAIDQLK + + ++G+D A + + + Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHLAVDIVRKGLE 178 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 QA+ + D ++IDTAGRL + LM + +R +K L P+ +L V+D+ GQ A Sbjct: 179 QARENRNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQEAAN 232 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 F+ TG+++TK+DG RGG + + P+ F G GE I D+E F S Sbjct: 233 VAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGEKITDIETFHPDRMS 292 Query: 308 AVITGCLD 315 + I G D Sbjct: 293 SRILGMGD 300 >gi|148380407|ref|YP_001254948.1| signal recognition particle protein [Clostridium botulinum A str. ATCC 3502] gi|153933476|ref|YP_001384624.1| signal recognition particle protein [Clostridium botulinum A str. ATCC 19397] gi|153935337|ref|YP_001388141.1| signal recognition particle protein [Clostridium botulinum A str. Hall] gi|168180670|ref|ZP_02615334.1| signal recognition particle protein [Clostridium botulinum NCTC 2916] gi|168184655|ref|ZP_02619319.1| signal recognition particle protein [Clostridium botulinum Bf] gi|226949802|ref|YP_002804893.1| signal recognition particle protein [Clostridium botulinum A2 str. Kyoto] gi|237795885|ref|YP_002863437.1| signal recognition particle protein [Clostridium botulinum Ba4 str. 657] gi|148289891|emb|CAL83999.1| signal recognition particle protein [Clostridium botulinum A str. ATCC 3502] gi|152929520|gb|ABS35020.1| signal recognition particle protein [Clostridium botulinum A str. ATCC 19397] gi|152931251|gb|ABS36750.1| signal recognition particle protein [Clostridium botulinum A str. Hall] gi|182668381|gb|EDT80360.1| signal recognition particle protein [Clostridium botulinum NCTC 2916] gi|182672287|gb|EDT84248.1| signal recognition particle protein [Clostridium botulinum Bf] gi|226841461|gb|ACO84127.1| signal recognition particle protein [Clostridium botulinum A2 str. Kyoto] gi|229263878|gb|ACQ54911.1| signal recognition particle protein [Clostridium botulinum Ba4 str. 657] Length = 449 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/285 (29%), Positives = 144/285 (50%), Gaps = 13/285 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 +S + + + +RE ++ L+ +D+ V + ++ + K +V Q+V+ V+E Sbjct: 23 LSEKDIKEAMRE-VKLALLEADVNYKVVKNFIKSVTEKCMGNEVLESLTPGQQVIKIVNE 81 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + +++ N S VI++VG+ G GKTT+ GKL+ + + +L A D + Sbjct: 82 ELTELMGSTESTLNSSTSGLT-VIMLVGLQGAGKTTMAGKLALHLRKRNKRPLLVACDVY 140 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAI QL++ + + ++ A + A+ K +V+IIDTAGRLH + Sbjct: 141 RPAAIKQLQVVGKQIDIPVFTMGDKLNPVDISKAAIEHAKNNKNNVVIIDTAGRLHIDEE 200 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + + + P +L V+DA TGQ+A+ F+ +G+I+TK+DG Sbjct: 201 LMDELHNIKEEVN------PSEILLVVDAMTGQDAVNVANNFNDKLDISGVILTKLDGDT 254 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I P+ F+G+GE +NDLE F ++ I G D Sbjct: 255 RGGAALSIKSMTGKPIKFVGLGEKMNDLEVFYPDRMASRILGMGD 299 >gi|23098986|ref|NP_692452.1| signal recognition particle [Oceanobacillus iheyensis HTE831] gi|22777214|dbj|BAC13487.1| signal recognition particle [Oceanobacillus iheyensis HTE831] Length = 448 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 112/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + +L A D +R AAI QL+ T D Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANHLRKKHNRNPLLVACDVYRPAAIKQLETLG--TQLDM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++A +A++A + A+ + D +IIDTAGRLH + LM + + +K Sbjct: 159 PVFSMGTEANPVDIAHQAIEHAKEEHRDYVIIDTAGRLHVDENLMDELQSIKNDVK---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+D+ TGQ+A+ E F+ TG+++TK+DG RGG + I P+ Sbjct: 215 --PDEIFLVVDSMTGQDAVNVAESFNEQLDITGVVLTKLDGDTRGGAALSIKSVTDKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ LE F + ++ I G D Sbjct: 273 FAGMGEKLDQLEAFHPERMASRILGMGD 300 >gi|156088505|ref|XP_001611659.1| SRP54-type protein, GTPase domain containing protein [Babesia bovis] gi|154798913|gb|EDO08091.1| SRP54-type protein, GTPase domain containing protein [Babesia bovis] Length = 566 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/280 (30%), Positives = 135/280 (48%), Gaps = 29/280 (10%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNW-----DF 107 + +DI + I L+ K+ A SV + + + + + ++L P +P N + Sbjct: 293 VANDISTMICDSISAGLVGKKTASLKSVSATVREALEDAVRRILTP-KEPINLLRNVSEA 351 Query: 108 SHRPHV--ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 R V +L +GVNGVGK+T + K++ + G KVML A DTFRS A++QLKI AD+ Sbjct: 352 KARGEVYSVLFLGVNGVGKSTSLAKVTYLLKCNGFKVMLIACDTFRSGAVEQLKIHADKL 411 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + G D +A+ E K A+A D ++IDTAGR+ +N LM + K+I V Sbjct: 412 GVELFERGYGKDPSAICREGLKHARANSYDAVLIDTAGRMQDNEPLMTALAKLIHV---- 467 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT-------------GLIMTKMDGT-AR 271 + PH +L V +A G +A+ Q+ F+ G+++TK D + Sbjct: 468 --NNPHLLLFVGEALVGNDAVDQLRKFNQAIQKMGDSSDELRGRKIDGIVLTKFDTVDDK 525 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 G + + PV F+G G+ +L D +T Sbjct: 526 VGAALSMCYITGQPVVFVGTGQTYTNLAKLEIDDVVRALT 565 >gi|73542631|ref|YP_297151.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ralstonia eutropha JMP134] gi|72120044|gb|AAZ62307.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ralstonia eutropha JMP134] Length = 462 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +IL+ G+ G GKTT +GKL+K + + K V+ + D +R AAI QLK +++ A+F Sbjct: 106 PAIILMAGLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGAEF 165 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S+ +A A A+ DVLI+DTAGRL + +M I + LK Sbjct: 166 FPSQPDQKPVDIARAAVDWARKHYHDVLIVDTAGRLGIDEAMMQEIAALHAELK------ 219 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG ARGG + + P+ F+ Sbjct: 220 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDARGGAALSVRHVTGRPIKFV 279 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE ++ LEPF + I G D Sbjct: 280 GVGEKLDGLEPFYPDRMAQRILGMGD 305 >gi|167376693|ref|XP_001734103.1| signal recognition particle receptor alpha subunit [Entamoeba dispar SAW760] gi|165904558|gb|EDR29773.1| signal recognition particle receptor alpha subunit, putative [Entamoeba dispar SAW760] Length = 488 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 91/326 (27%), Positives = 158/326 (48%), Gaps = 49/326 (15%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 M Q+ + S + K+ GF T + I + L+ E++E +LI ++ Sbjct: 172 MKKQEKPKSNGSTLSKIFAGFNGTRI--------IDEAESLEQA--EKIEKMLIEKNVNS 221 Query: 61 AVAQKI---VEELLTKRYAKDVSVQ-RVLYDVSELIHKMLMPLS----------KPFNWD 106 +A +I ++ LL + +++ V+ V+E++ +++ P S K N D Sbjct: 222 EIAAQIKSNIQTLLNGKKVDTFTLRGTVIQGVTEVLTRIMTPTSPIDVAKEISEKKANGD 281 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + ++ +GVNGVGK+T + K++ ++ KVM+AA DTFR+ A+DQL + A + Sbjct: 282 V----YTMVFLGVNGVGKSTSLSKMACWLTSLNYKVMIAACDTFRAGAVDQLAVHAQKLG 337 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 +D +A+A A K+A+ DVL++DTAGR+ N LM I K++ Sbjct: 338 ITLYEKGYDTDPSAIARNALKRAKEDGYDVLLVDTAGRMQGNDALMKAIAKLV------- 390 Query: 227 PHAPHS--VLQVLDATTGQNALRQVEMFHAV----------AGTTGLIMTKMDGT-ARGG 273 H+ + VL V +A G +A+ Q+ F+ G G+I+TK D + G Sbjct: 391 -HSAQTDLVLFVAEALVGNDAVNQLTTFNRYIIDYAPNKQSKGVNGIILTKFDTIDDKVG 449 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLE 299 I + IP+ F+G G+ DL+ Sbjct: 450 AAISLTYCTGIPILFVGSGQHYTDLK 475 >gi|330826381|ref|YP_004389684.1| signal recognition particle protein [Alicycliphilus denitrificans K601] gi|329311753|gb|AEB86168.1| signal recognition particle protein [Alicycliphilus denitrificans K601] Length = 459 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 109/209 (52%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P VIL+ G+ G GKTT KL+K + + KV+ +GD +R AAI+QLK + Sbjct: 97 AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTKQAG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 A++ S +A A A+ DVL++DTAGRL + +LM I + VL Sbjct: 157 AEWFPSSPDQKPRDIALAALDYARKHYFDVLLVDTAGRLAIDELLMQEIKDLHAVLN--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA GQ+A+ + F TG+++TK+DG +RGG + + P+ Sbjct: 214 ---PVETLFVVDAMQGQDAVNTAKAFKEALPLTGIVLTKLDGDSRGGAALSVRAITGAPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F GV E I+ LE F A+ + + G D Sbjct: 271 KFAGVSEKIDGLEVFDAQRHAGRVLGMGD 299 >gi|322806714|emb|CBZ04283.1| signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) [Clostridium botulinum H04402 065] Length = 449 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/285 (29%), Positives = 144/285 (50%), Gaps = 13/285 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 +S + + + +RE ++ L+ +D+ V + ++ + K +V Q+V+ V+E Sbjct: 23 LSEKDIKEAMRE-VKLALLEADVNYKVVKNFIKSVTEKCMGNEVLQSLTPGQQVIKIVNE 81 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + +++ N S VI++VG+ G GKTT+ GKL+ + + +L A D + Sbjct: 82 ELTELMGSTESTLNSSTSGLT-VIMLVGLQGAGKTTMAGKLALHLRKRNKRPLLVACDVY 140 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAI QL++ + + ++ A + A+ K +V+IIDTAGRLH + Sbjct: 141 RPAAIKQLQVVGKQIDIPVFTMGDKLNPVDISKAAIEHAKNNKNNVVIIDTAGRLHIDEE 200 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + + + P +L V+DA TGQ+A+ F+ +G+I+TK+DG Sbjct: 201 LMDELHNIKEEVN------PSEILLVVDAMTGQDAVNVANNFNDKLDISGVILTKLDGDT 254 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I P+ F+G+GE +NDLE F ++ I G D Sbjct: 255 RGGAALSIKSMTGKPIKFVGLGEKMNDLEVFYPDRMASRILGMGD 299 >gi|4140392|gb|AAD11975.1| signal receptor alpha subunit [Giardia intestinalis] Length = 571 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 65/197 (32%), Positives = 103/197 (52%), Gaps = 14/197 (7%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 RP+VI + GVNGVGKTT I KL + G + ++ A D+FRS A++QL+ +R A Sbjct: 366 RPYVICMTGVNGVGKTTSIAKLLYIFKNNGSRSLVCACDSFRSGAVEQLQEHCNRLGATL 425 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 G +A+A+A K+A++ D+ +IDT GR +NN LM +G ++ +A Sbjct: 426 YSQGYGKNASAIAKYGIKEAESLNYDICLIDTTGRQYNNGPLMQALGALVL------ENA 479 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAV-------AGTTGLIMTKMDGTA-RGGGLIPIVVT 281 P VL V +A TG + Q++ F G G+I+TK D + G + + Sbjct: 480 PDVVLFVGEALTGNEGVEQLKQFDCALKSYTNSRGIDGIILTKFDTCGDKVGAALNLCFV 539 Query: 282 HKIPVYFLGVGEGINDL 298 +P+ ++G G+ D Sbjct: 540 CDLPILYVGTGQSYPDF 556 >gi|156741648|ref|YP_001431777.1| signal recognition particle protein [Roseiflexus castenholzii DSM 13941] gi|156232976|gb|ABU57759.1| signal recognition particle protein [Roseiflexus castenholzii DSM 13941] Length = 444 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/283 (29%), Positives = 143/283 (50%), Gaps = 15/283 (5%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV-LYDVSELIHKMLM 97 ++ VRE ++ + L+ +D+ + V ++ V + K ++V+ V +++H+ L+ Sbjct: 24 EEDVREAMKQVRIALLEADVNLKVVREFVARVTEKAVGEEVTKSLTPAQQVIKIVHQELI 83 Query: 98 PLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 L N + P +I+++G+ G GKTT KL+ + G + +L A D +R AA Sbjct: 84 DLLGQANVPLAEARPGPTIIMLIGLQGSGKTTTAAKLALWLRKKGKRPLLVAADIYRPAA 143 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 I QL+ + S +A A ++A+ + + +IIDTAGRL + LM Sbjct: 144 ITQLESLGRQLGIPVHSEGAQSRPPDIARNAVRRARDESITHVIIDTAGRLQIDEPLMVE 203 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + ++ ++ P L V+DA GQ A+R E F+ G TG+I TK+DG ARGG Sbjct: 204 LEQINAAVE------PVERLLVVDAMIGQEAVRVAEEFNRRVGLTGIIFTKIDGDARGGA 257 Query: 275 LIPIVVTHKIPVYFLGVGEGI--NDLEPFVAKDFSAVITGCLD 315 + + +P+ FLG GE + + +EPF ++ I G D Sbjct: 258 ALSVRAVTGVPIKFLGSGEKVEASTIEPFHPDRLASRILGMGD 300 >gi|1711509|sp|P49971|SR541_SOLLC RecName: Full=Signal recognition particle 54 kDa protein 1; Short=SRP54 gi|556900|emb|CAA84275.1| 54-kD signal recognition particle (SRP) specific protein [Solanum lycopersicum] Length = 496 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 129/264 (48%), Gaps = 12/264 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112 L+R D+ + + + E L + K +Q+ +Y+ EL K+L P F +P Sbjct: 48 LVR-DMSTNIKKIVNLEDLAAGHNKRRIIQQAVYN--ELC-KILDPGKPAFTLK-KGKPS 102 Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-C 171 V++ VG+ G GKTT K + G K L DTFR+ A DQLK A + F Sbjct: 103 VVMFVGLQGSGKTTTCTKYAYHHQKRGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS 162 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 S SD +A + + + + D++I+DT+GR + L + ++ K P Sbjct: 163 SYTESDPVKIAVDGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAQK------PD 216 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 V+ V+D++ GQ A Q + F +I+TKMDG A+GGG + V K PV F+G Sbjct: 217 LVIFVMDSSIGQAAFDQAQAFRQSVAVGAVIVTKMDGHAKGGGALSRVAATKSPVIFIGT 276 Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315 GE +++ E F K F + + G D Sbjct: 277 GEHMDEFEVFDVKPFVSRLLGMGD 300 >gi|332185681|ref|ZP_08387428.1| signal recognition particle protein [Sphingomonas sp. S17] gi|332014039|gb|EGI56097.1| signal recognition particle protein [Sphingomonas sp. S17] Length = 506 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/273 (29%), Positives = 139/273 (50%), Gaps = 17/273 (6%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA+ V+++ + ++V Q+V+ V + + ML + D Sbjct: 38 LLEADVALPVARDFVDKVTEQAIGQNVLRSITPGQQVVKIVHDALVDMLGADASELLLDV 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWA 162 + P V+++VG+ G GKTT K++K++S + KV++A+ D R AA +QL Sbjct: 98 TP-PAVVMMVGLQGSGKTTTTAKIAKRLSSGAMGRERKKVLMASLDVNRPAAQEQLATLG 156 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 + + G +A A + A+ + DVL++DTAGRLH + LM + + + Sbjct: 157 TQVEVSTLPIIAGQQPVEIARRALQAAKLQGYDVLMLDTAGRLHVDQALMDEMKAVAEIA 216 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 + P +L V+D+ TGQ+A+ F TG+++T+MDG ARGG + + Sbjct: 217 Q------PQEILLVVDSLTGQDAVNVATSFSEQVPLTGVVLTRMDGDARGGAALSMRAVT 270 Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F GVGE ++ LE F + + I G D Sbjct: 271 GKPIKFAGVGEKMDALEAFHPERVAGRILGMGD 303 >gi|260890999|ref|ZP_05902262.1| signal recognition particle protein [Leptotrichia hofstadii F0254] gi|260859026|gb|EEX73526.1| signal recognition particle protein [Leptotrichia hofstadii F0254] Length = 445 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 107/205 (52%), Gaps = 6/205 (2%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P V+++ G+ G GKTT GKL+K + G K L D +R AA QLK+ ++ Sbjct: 100 PTVVMLSGLQGAGKTTFSGKLAKHLKSKGEKPFLIGADVYRPAAKKQLKVLGEQVKVPVF 159 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + +DA + + + ++ + +IIDTAGRLH + LM+ + + D P Sbjct: 160 TIDESTDALEIVKQGIEASKTEHATYVIIDTAGRLHIDEQLMSELQDI------KDSFNP 213 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 + +L V+D TGQ+A+ + F+ TG+++TK+DG RGG + + P+ F+ Sbjct: 214 NEILLVVDGMTGQDAVNVAKEFNEQLDITGVVLTKLDGDTRGGAALSVKEVAGKPIKFIS 273 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 GE ++D+ PF ++ I G D Sbjct: 274 EGEKLDDIAPFHPDRLASRILGMGD 298 >gi|222112106|ref|YP_002554370.1| signal recognition particle protein [Acidovorax ebreus TPSY] gi|221731550|gb|ACM34370.1| signal recognition particle protein [Acidovorax ebreus TPSY] Length = 459 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P VIL+ G+ G GKTT KL+K + + KV+ +GD +R AAI+QLK + Sbjct: 97 AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTKQAG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 A++ S + +A A A+ DVL++DTAGRL + +LM I + VL Sbjct: 157 AEWFPSTPDQKPSDIALGALDYAKKHFFDVLLVDTAGRLAIDEVLMQEIKDLHAVLN--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA GQ+A+ + F TG+++TK+DG +RGG + + P+ Sbjct: 214 ---PVETLFVVDAMQGQDAVNTAKAFKEALPLTGIVLTKLDGDSRGGAALSVRQVTGAPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F GV E I+ LE F A+ + I G D Sbjct: 271 KFAGVSEKIDGLEVFDAERHAGRILGMGD 299 >gi|306831354|ref|ZP_07464514.1| signal recognition particle protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426590|gb|EFM29702.1| signal recognition particle protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 521 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 90/308 (29%), Positives = 157/308 (50%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L+ +I ++L + V +E+ L+ +D+ + V + ++ + + Sbjct: 3 FESLTERLQGVFKNIRGKKKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130 ++ Q+++ V+E + ++L S+ + S + P +I++VG+ G GKTT GK Sbjct: 63 HEIIDTLDPTQQIVKIVNEELTEILG--SETAELEKSPKIPTIIMMVGLQGAGKTTFAGK 120 Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187 L+ K+ D + ++ A D +R AAIDQLK + + ++G+D +A + Sbjct: 121 LANKLIKDENARPLMIAADIYRPAAIDQLKTLG--SQINVPVFDMGTDHSAVEIVTNGLA 178 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 QA+ D +IIDTAGRL + LM + +R +K L P+ +L V+D+ GQ A Sbjct: 179 QAKENHNDYVIIDTAGRLQIDEKLM----EELRDVKAL--ANPNEILLVVDSMIGQEAAN 232 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG RGG + I P+ F G GE I D+E F S Sbjct: 233 VADEFNKQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMS 292 Query: 308 AVITGCLD 315 + I G D Sbjct: 293 SRILGMGD 300 >gi|313665439|ref|YP_004047310.1| signal recognition particle protein [Mycoplasma leachii PG50] gi|312949459|gb|ADR24055.1| signal recognition particle protein [Mycoplasma leachii PG50] Length = 447 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/283 (28%), Positives = 145/283 (51%), Gaps = 18/283 (6%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93 ++ ++E L+++ L+ +D+ + ++I+ + K + + Q+++ V E + Sbjct: 26 EENIKETLKEIRLSLLEADVNIEATKEIINNVKQKALGGYIFEGANAHQQMIKIVHEELV 85 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRS 152 +L + P + + +P V+++VG+ G GKTT KL+ ++ K +L G D +R Sbjct: 86 NILGKENAPL--ELNKKPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKKVLLVGLDIYRP 143 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AI+QL +T+ V + D A EA + AQ DV+I+DTAGRL + +LM Sbjct: 144 GAIEQLIQLGQKTNTQ-VFEKGKQDPILTAQEALEYAQENNFDVVILDTAGRLQVDQVLM 202 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + + + +P +L V+D +GQ + F++ +G+++TK+DG ARG Sbjct: 203 TELDNLKK------KTSPSEILLVVDGMSGQEIINVTNEFNSKLKLSGVVVTKLDGDARG 256 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + I K+P+ F+G GEG N L F K + + G D Sbjct: 257 GATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGMGD 299 >gi|170695319|ref|ZP_02886465.1| signal recognition particle protein [Burkholderia graminis C4D1M] gi|170139719|gb|EDT07901.1| signal recognition particle protein [Burkholderia graminis C4D1M] Length = 455 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 108/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT +GKL+K + + KV+ + D +R AAI QLK ++ ADF Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 SE +A A A+ DVLI+DTAGRL + +M I + LK Sbjct: 164 FPSEPDQKPVDIARAAVDWAKRHYHDVLIVDTAGRLGIDEAMMQEITALHTTLK------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F TG+++TK+DG +RGG + + P+ F+ Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHVTGRPIKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F + I G D Sbjct: 278 GVAEKLDGLEVFYPDRMANRILGMGD 303 >gi|153940237|ref|YP_001391747.1| signal recognition particle protein [Clostridium botulinum F str. Langeland] gi|170754416|ref|YP_001781992.1| signal recognition particle protein [Clostridium botulinum B1 str. Okra] gi|152936133|gb|ABS41631.1| signal recognition particle protein [Clostridium botulinum F str. Langeland] gi|169119628|gb|ACA43464.1| signal recognition particle protein [Clostridium botulinum B1 str. Okra] gi|295319772|gb|ADG00150.1| signal recognition particle protein [Clostridium botulinum F str. 230613] Length = 449 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/285 (29%), Positives = 144/285 (50%), Gaps = 13/285 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 +S + + + +RE ++ L+ +D+ V + ++ + K +V Q+V+ V+E Sbjct: 23 LSEKDIKEAMRE-VKLALLEADVNYKVVKNFIKSVTEKCMGNEVLESLTPGQQVIKIVNE 81 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + +++ N S VI++VG+ G GKTT+ GKL+ + + +L A D + Sbjct: 82 ELTELMGSTESTLNSSTSGL-TVIMLVGLQGAGKTTMAGKLALHLRKRNKRPLLVACDVY 140 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAI QL++ + + ++ A + A+ K +V+IIDTAGRLH + Sbjct: 141 RPAAIKQLQVVGKQIDIPVFTMGDKLNPVDISKAAIEHAKNNKNNVVIIDTAGRLHIDEE 200 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + + + P +L V+DA TGQ+A+ F+ +G+I+TK+DG Sbjct: 201 LMDELHNIKEEVN------PSEILLVVDAMTGQDAVNVANNFNDKLDISGVILTKLDGDT 254 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I P+ F+G+GE +NDLE F ++ I G D Sbjct: 255 RGGAALSIKSMTGKPIKFVGLGEKMNDLEVFYPDRMASRILGMGD 299 >gi|302554422|ref|ZP_07306764.1| signal recognition particle protein [Streptomyces viridochromogenes DSM 40736] gi|302472040|gb|EFL35133.1| signal recognition particle protein [Streptomyces viridochromogenes DSM 40736] Length = 545 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/284 (29%), Positives = 142/284 (50%), Gaps = 18/284 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + ++ L + +VS Q+VL V+E + +L Sbjct: 57 DATAREIRIALLEADVALPVVRTFIKNLKERALGAEVSRALNPAQQVLKIVNEELVTILG 116 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + P VI++ G+ G GKTT+ GKL + + + G +L A D R A++Q Sbjct: 117 GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGRWLKEQGHSPLLVAADLQRPNAVNQ 175 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R E G+ D +A ++ + A+ K D++I+DTAGRL + +M Sbjct: 176 LSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEHARTKVHDIVIVDTAGRLGIDQEMMQQ 235 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P +L V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 236 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 289 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + I P+ F GE ++D + F ++ I LD G+ Sbjct: 290 ALSIRQITGKPIMFASNGEKLDDFDAFHPDRMASRI---LDMGD 330 >gi|255506597|ref|ZP_05382236.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia trachomatis D(s)2923] gi|289525070|emb|CBJ14540.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia trachomatis Sweden2] gi|296434610|gb|ADH16788.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia trachomatis E/150] gi|296438328|gb|ADH20481.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia trachomatis E/11023] Length = 448 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 110/204 (53%), Gaps = 9/204 (4%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P VIL+ G+ G GKTT KL+ KV++A+ D R +A++QL+ +T AD Sbjct: 99 PAVILLCGLQGAGKTTTCAKLADYFLREKKAKKVLVASCDLKRFSAVEQLEGLVKQTGAD 158 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 F G+D +A EA + A+++ D++++DTAGRLH + LM + + RV Sbjct: 159 FF-RRKGNDPVDMAAEAVQHAKSQGYDLVLVDTAGRLHVDDALMDELVAIARV------T 211 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 +P L V++ GQ+A+ + F G TG++++ DG AR G ++ + P+ F Sbjct: 212 SPCETLFVMNLAMGQDAVVTAKAFDERLGLTGVVVSMADGDARAGAVLSVKSLLNKPIKF 271 Query: 289 LGVGEGINDLEPFVAKDFSAVITG 312 G GE I DL PF A+ + I G Sbjct: 272 EGCGEKIKDLRPFNAQSMAERILG 295 >gi|324994452|gb|EGC26365.1| signal recognition particle protein [Streptococcus sanguinis SK678] Length = 524 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 110/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G+D A + + +QA+A D ++IDTAGRL + LM + ++ L Sbjct: 159 PVFALGTDVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F++ TG+I+TK+DG RGG + + P+ Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|303248436|ref|ZP_07334695.1| signal recognition particle protein [Desulfovibrio fructosovorans JJ] gi|302490147|gb|EFL50066.1| signal recognition particle protein [Desulfovibrio fructosovorans JJ] Length = 505 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/267 (30%), Positives = 130/267 (48%), Gaps = 10/267 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPL--SKPFNWDFSH 109 L+ +D+ V + V+ + + +DV V +++H ++ L + D Sbjct: 38 LLEADVNFKVVKDFVDRVRERAMGQDVLKSLTPGQQVVKIVHDEMVELLGGEARELDLKA 97 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P VI+VVG+ G GKTT KL+ K+ + K L D +R AAIDQL A + + Sbjct: 98 SPAVIMVVGLQGSGKTTTCAKLALKLRRELKRKPYLVPADVYRPAAIDQLHKLASQLDIE 157 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 S + + A ++A+ DV+++DTAGRLH + LM + + Sbjct: 158 AFPSTTDQNPVDICTAALEEAKRTGHDVVLLDTAGRLHVDEALMEELSAIKA------KT 211 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P +L V DA TGQ+A+ F+ G TG+++TKMDG ARGG + + + F Sbjct: 212 GPGEILFVADAMTGQDAVTVASSFNDRLGVTGVVLTKMDGDARGGAALSVRQVTGKSIKF 271 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +G GE ++DLE F ++ I G D Sbjct: 272 VGTGEKVSDLEVFHPDRVASRILGMGD 298 >gi|291535144|emb|CBL08256.1| signal recognition particle protein [Roseburia intestinalis M50/1] gi|291539673|emb|CBL12784.1| signal recognition particle protein [Roseburia intestinalis XB6B4] Length = 360 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 159/304 (52%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ ++ S RL +D V+ L+++ L+ +D+ V ++ V+++ + Sbjct: 3 FDSLSEKLQNVFKNLRSKGRLTEDDVKAALKEVKMALLEADVNFKVVKQFVKDVQERAIG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + +++ + +I++ G+ G GKTT K+ Sbjct: 63 QDVMNGLNPGQMVIKIVNEEMVRLMGSETTEIALRPGKELTIIMMAGLQGAGKTTTTAKI 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K+ G KV+LAA D +R AAI+QL+I ++ + + +A A + A Sbjct: 123 AGKLKAKGKKVLLAACDVYRPAAIEQLQINGEKQGVEVFSMGDKNTPVNIAKAAVEHATK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +VLIIDTAGRLH + +MA ++I++ + + A + V+DA TGQ+A+ + Sbjct: 183 NDFNVLIIDTAGRLHVDEDMMA---ELIQIKENV---AVSQTILVVDAMTGQDAVNVAKT 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F G G+++TK+DG RGG + I P+ + G+GE ++DLE F ++ I Sbjct: 237 FDEKIGIDGVVLTKLDGDTRGGAALSIRAVTGKPILYAGMGEKLSDLEQFYPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|261367302|ref|ZP_05980185.1| signal recognition particle protein [Subdoligranulum variabile DSM 15176] gi|282570905|gb|EFB76440.1| signal recognition particle protein [Subdoligranulum variabile DSM 15176] Length = 451 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/270 (30%), Positives = 138/270 (51%), Gaps = 16/270 (5%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ VA+ ++ + ++V Q+V+ V+E + K LM +P Sbjct: 39 LLEADVNYKVAKDFCAQVSERAMGQEVMESLTPAQQVVKIVNEELTK-LMGGDEPQYLHI 97 Query: 108 SHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 ++ V+++ G+ G GKTT KL K G + +L A D +R AAI QL+I ++ Sbjct: 98 KNKGQTVLMMCGLQGNGKTTHAAKLGKYYRSQGRRPLLVACDVYRPAAIQQLQIVGEQAG 157 Query: 167 ADFVCSEIGSDAAA-LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 +G++ +A +A A+ D++I+DTAGRL + LM +++R+ + + Sbjct: 158 VPVFT--MGTEKPEHIAQQAMAHARDHGNDIVILDTAGRLQIDDALM---DELVRIKEAV 212 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 + L V+DA GQ A+ + F+ G TG+++TK DG RGG + ++ P Sbjct: 213 EVD---ETLLVVDAMAGQEAVNVAKTFNEKIGITGVVLTKTDGDTRGGAALSVLAVTGKP 269 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +YF G GE + DLEPF ++ I G D Sbjct: 270 IYFQGTGEKLEDLEPFYPSRMASRILGMGD 299 >gi|225683852|gb|EEH22136.1| signal recognition particle receptor subunit alpha [Paracoccidioides brasiliensis Pb03] Length = 554 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 87/283 (30%), Positives = 138/283 (48%), Gaps = 40/283 (14%) Query: 49 LEDLLIRSDIG----VAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101 +E+ L++ ++ V + + +V EL+ K+ A S+ L E + K+L P S Sbjct: 265 MEEHLLKKNVAREAAVRLCEGVVHELVGKKTASFQSIDSALRSAMESSLRKILTPTSSLD 324 Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 P + RP+VI +VGVNGVGK+T + K+ + +V++ A DTFR Sbjct: 325 LLREIEAVTSPSSSQRQRRPYVISIVGVNGVGKSTNLSKICFFLLQNNYRVLITACDTFR 384 Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200 S A++QL++ A R + E G DAA +A +A A A DV++ID Sbjct: 385 SGAVEQLRVHA-RNLQELSSRENVGHVGLYQKGYGKDAANVAKDAVAYATANSFDVVLID 443 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH----AVA 256 TAGR HN+ LM+ + K + + P + V +A G +++ Q F+ A Sbjct: 444 TAGRRHNDQRLMSSLEKFAKFAQ------PDKIFMVGEALVGTDSVMQARNFNQAFGAGR 497 Query: 257 GTTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G G I++K D G L+ +V IP+ FLG+G+ DL Sbjct: 498 GLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGIGQHYGDL 540 >gi|209559470|ref|YP_002285942.1| Signal recognition particle, subunit Ffh SRP54 [Streptococcus pyogenes NZ131] gi|209540671|gb|ACI61247.1| Signal recognition particle, subunit Ffh SRP54 [Streptococcus pyogenes NZ131] Length = 520 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 88/308 (28%), Positives = 159/308 (51%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L++ I ++L + V +E+ L+ +D+ + V + ++ + + Sbjct: 3 FENLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130 ++ Q++L V+E + +L S+ D S + P +I++VG+ G GKTT GK Sbjct: 63 HEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTTFAGK 120 Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187 L+ K+ + + ++ A D +R AAIDQLK + + ++G+D +A + + + Sbjct: 121 LANKLIKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVRKGLE 178 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 QA+ + D ++IDTAGRL + LM + +R +K L P+ +L V+D+ GQ A Sbjct: 179 QARENRNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQEAAN 232 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 F+ TG+++TK+DG RGG + + P+ F G+GE I D+E F S Sbjct: 233 IAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRMS 292 Query: 308 AVITGCLD 315 + I G D Sbjct: 293 SRILGMGD 300 >gi|190893804|ref|YP_001980346.1| signal recognition particle GTP-binding protein [Rhizobium etli CIAT 652] gi|190699083|gb|ACE93168.1| signal recognition particle GTP-binding protein [Rhizobium etli CIAT 652] Length = 525 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 113/206 (54%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT K++ ++S KV++A+ DT R AA +QL+ + S D Sbjct: 100 PVVVMMVGLQGSGKTTTTAKIAHRLSTREKKKVLMASLDTRRPAAQEQLRQLGAQASIDT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ DV+I+DTAGR H + LM +M + KR +PH Sbjct: 160 LPIIAGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMV---EMADIKKRSNPH- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +L V D+ TGQ+A+ F G TGL++T+MDG RGG + + P+ + Sbjct: 216 --EILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE +++LE F + + I G D Sbjct: 274 GVGEKMSELEEFHPRRIADRILGMGD 299 >gi|159478459|ref|XP_001697320.1| chloroplast SRP54 subunit of signal recognition particle [Chlamydomonas reinhardtii] gi|158274478|gb|EDP00260.1| chloroplast SRP54 subunit of signal recognition particle [Chlamydomonas reinhardtii] Length = 549 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/213 (36%), Positives = 113/213 (53%), Gaps = 14/213 (6%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL-KIWADR 164 + HR V G GVGKTT GKL+ + A +L A D +R AAIDQL K+ A Sbjct: 162 EVGHR--AACVHGARGVGKTTAAGKLALYLKKAKKSCLLVATDVYRPAAIDQLVKLGA-- 217 Query: 165 TSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 + D E+G+D + +A + ++A+ VD +IIDTAGRL + +MA + + + Sbjct: 218 -AIDVPVFEMGTDVSPVEIAKKGVEEARRLGVDAVIIDTAGRLQVDEGMMAELRDVKSAV 276 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 + P L V+DA TGQ A V F+ +G I+TKMDG +RGG + + Sbjct: 277 R------PSDTLLVVDAMTGQEAANLVRSFNEAVDISGAILTKMDGDSRGGAALSVREVS 330 Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+GVGE + LEPF + ++ I G D Sbjct: 331 GKPIKFVGVGEKMEALEPFYPERMASRILGMGD 363 >gi|330933421|ref|XP_003304165.1| hypothetical protein PTT_16633 [Pyrenophora teres f. teres 0-1] gi|311319393|gb|EFQ87728.1| hypothetical protein PTT_16633 [Pyrenophora teres f. teres 0-1] Length = 541 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 94/301 (31%), Positives = 149/301 (49%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVA----QKIVEELLTKRYAKD 78 ++ +TD+ S LD D + +E+ + L+ +D+ V + Q I + K A Sbjct: 9 RINAAVTDLTRSPNLDEKAFDAMVKEISNALVEADVNVKLVMNLRQSIKRTVDFKHLAPG 68 Query: 79 VS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 V+ +Q+ ++D EL+ KM+ P ++PF + +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVFD--ELV-KMVDPHAEPFKPR-KGKSNVIMFVGLQGAGKTTTCTKLARW 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G K L DTFR+ A DQLK A + + S +D +A E ++ + ++ Sbjct: 125 YQARGFKACLVCADTFRAGAFDQLKQNATKAKIPYYGSHTQTDPVVVAGEGVEKFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 +++I+DT+GR L + ++ V+ P + VLD T GQ A Q F Sbjct: 185 EIIIVDTSGRHRQEKDLFDEMVQIQNVV------TPDQTIMVLDGTIGQAAESQARAFKE 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V P+ FLG GE + DLE F + F + + G Sbjct: 239 AADFGAIIITKTDGAAAGGGAISAVAATHTPIVFLGNGEHMLDLERFAPQAFVSKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|268680269|ref|YP_003304700.1| signal recognition particle protein [Sulfurospirillum deleyianum DSM 6946] gi|268618300|gb|ACZ12665.1| signal recognition particle protein [Sulfurospirillum deleyianum DSM 6946] Length = 446 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/266 (28%), Positives = 137/266 (51%), Gaps = 6/266 (2%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 E L+ L+++D+ + + ++ E+ + AK + L + + ++L + Sbjct: 30 ENLKKALLKADVHHKIVRDLLREVEIETKAKGIGQANFLRALKTNLTQILTVSGRQGFVF 89 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 S P +L+VG+ G GKTT KL+ + KV++ A D R AA++QLK Sbjct: 90 ASKPPTTVLMVGLQGSGKTTTTVKLANYLKLKQKKVLVVACDLQRLAAVEQLKQLCGANE 149 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + ++ A+A A ++A+A DV+++DTAGRL ++ LM + + +K+ Sbjct: 150 IDLYFEDESANPIAIAKNAMQKARAGLYDVVLVDTAGRLAIDTELM----EQLEAIKK-- 203 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P + V D+ TGQ+A+R FH +G+I++K DG +GG + I +P+ Sbjct: 204 EVLPDEIFYVADSMTGQDAVRSAVTFHEKITLSGVILSKFDGDGKGGVALGIAEQTNVPL 263 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITG 312 F+GVGE + DLE F+ + + + G Sbjct: 264 RFIGVGEKVADLEHFIPERIVSRLMG 289 >gi|227495312|ref|ZP_03925628.1| signal recognition particle [Actinomyces coleocanis DSM 15436] gi|226831182|gb|EEH63565.1| signal recognition particle [Actinomyces coleocanis DSM 15436] Length = 524 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 86/288 (29%), Positives = 142/288 (49%), Gaps = 26/288 (9%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS--------VQRVLYDVSELIHK 94 D E+ L+ +D+ + V ++ V + K V+ V RV++D EL+ + Sbjct: 28 DATASEIRRALLDADVALPVVRQFVSAVKEKALGATVTQGLKPGQQVVRVVHD--ELV-E 84 Query: 95 MLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 +L ++ + F+ R P + ++ G+ G GKTT+ GKL+K M +V+L A D R Sbjct: 85 ILGGETRELH--FAQRGPTIFMLAGLQGAGKTTLAGKLAKWMRSENKRVLLVAADLQRPN 142 Query: 154 AIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 A++QL++ R + E G+ D +A A D++I+DTAGRL + Sbjct: 143 AVNQLQVMGQRAGVEVWAPEPGNGVGDPVQVARTGVNHAIENGFDLVIVDTAGRLGIDEE 202 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 +M + + PH VL VLDA GQ+A++ F G TG++++K+DG A Sbjct: 203 MMQQARNIREAIN------PHEVLFVLDAMVGQDAVQTSVAFRDGVGFTGVVLSKLDGDA 256 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 RGG + + P+ F GEG++D E F ++ I LD G+ Sbjct: 257 RGGAALSVRGVTGQPILFASTGEGLDDFERFHPDRMASRI---LDMGD 301 >gi|262037316|ref|ZP_06010787.1| signal recognition particle protein [Leptotrichia goodfellowii F0264] gi|261748664|gb|EEY36032.1| signal recognition particle protein [Leptotrichia goodfellowii F0264] Length = 445 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 104/205 (50%), Gaps = 6/205 (2%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P ++++ G+ G GKTT GKLSK + G L D +R AA QLK+ A++ Sbjct: 100 PTIVMLSGLQGAGKTTFAGKLSKHLKSKGESPFLIGADVYRPAAKKQLKVLAEQVKVPSF 159 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + +D + + ++A+ +IIDTAGRLH + LM + + P Sbjct: 160 TIDESTDVIEICKKGIEEAKNAHATYVIIDTAGRLHVDEQLMEELQNIKSTFN------P 213 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 H +L V+D TGQ+A+ + F+ TG+++TK+DG RGG + + P+ F+ Sbjct: 214 HEILLVVDGMTGQDAVNVAKTFNDRLDITGVVLTKLDGDTRGGAALSVKEVAGKPIKFIS 273 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 GE ++D+ PF ++ I G D Sbjct: 274 EGEKLDDIAPFHPDRLASRILGMGD 298 >gi|121606268|ref|YP_983597.1| signal recognition particle protein [Polaromonas naphthalenivorans CJ2] gi|120595237|gb|ABM38676.1| signal recognition particle subunit FFH/SRP54 (srp54) [Polaromonas naphthalenivorans CJ2] Length = 452 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P VIL+ G+ G GKTT KL+K + + KV+ +GD +R AAI+QLK+ + Sbjct: 97 AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKVVTKQAG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 A++ S A +A A A+ DVL++DTAGRL + LM I ++ +LK Sbjct: 157 AEWFPSTPDQKPADIARAALDYAKRHFFDVLLVDTAGRLAIDEALMNEIKELHAILK--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA GQ+A+ + F TG+I+TK DG +RGG + + P+ Sbjct: 214 ---PIETLFVVDAMQGQDAVNTAKAFKEALPLTGIILTKTDGDSRGGAALSVRQITGAPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G E ++ LE F A+ + I G D Sbjct: 271 KFSGTSEKLDGLEVFDAERHAGRILGMGD 299 >gi|309358215|emb|CAP34405.2| hypothetical protein CBG_16436 [Caenorhabditis briggsae AF16] Length = 496 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 90/300 (30%), Positives = 145/300 (48%), Gaps = 29/300 (9%) Query: 29 KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---------VEELL----TKRY 75 K G +I+ LD ++E + LI SD+ + + +++ EE++ +RY Sbjct: 16 KLGQNTVINEEELDLMLKE-VCTALIESDVHIRLVKQLKDNVKNAINFEEIVGGANKRRY 74 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 +Q+ +++ EL+ K++ P PF R +V + VG+ G GKTT K++ Sbjct: 75 -----IQKTVFN--ELL-KLVDPGVTPFTPTKGKR-NVFMFVGLQGSGKTTTCSKMAYYY 125 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 G K L DTFR+ A DQLK A + F S D +A E ++ + + Sbjct: 126 QRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYSEIDPVKIAAEGVEKFTKEGFE 185 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 ++I+DT+GR + L +M++V + P +V+ V+DA+ GQ Q F Sbjct: 186 IIIVDTSGRHKQEASLFE---EMLQVSNAV---TPDNVVFVMDASIGQACEAQARAFSQT 239 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+D A+GGG + V K PV F+G GE I+D E F K F + G D Sbjct: 240 VDVASVIITKLDSHAKGGGALSAVAVTKSPVIFIGTGEHIDDFEIFKPKSFVQKLLGMGD 299 >gi|210615865|ref|ZP_03290827.1| hypothetical protein CLONEX_03046 [Clostridium nexile DSM 1787] gi|210150068|gb|EEA81077.1| hypothetical protein CLONEX_03046 [Clostridium nexile DSM 1787] Length = 449 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 88/304 (28%), Positives = 154/304 (50%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ ++ S RL ++ V+ L+++ L+ +D+ V + V+++ + Sbjct: 3 FDSLSEKLQNVFKNLRSKGRLTENDVKAALKEVKMALLEADVNFKVVKGFVKDVQERAIG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + K++ + + VI++ G+ G GKTT K+ Sbjct: 63 QDVMNGLNPGQMVIKIVNEELIKLMGSETTEIKLEPGQATTVIMMAGLQGAGKTTTTAKI 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K+ G K +L A D +R AAI QL+I ++ + A +A A + A Sbjct: 123 AGKLKLKGKKPLLVACDVYRPAAIKQLQINGEKQGVEVFSMGENHKPANIAKAALEHAAK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +++I+DTAGRLH + +MA + ++ + H + V+DA TGQ+A+ Sbjct: 183 NGNNIVILDTAGRLHIDEDMMAELQEIKETV------TVHQTILVVDAMTGQDAVNVASS 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G G+I+TK+DG RGG + I P+ ++G+GE ++DLE F ++ I Sbjct: 237 FNEKIGIDGVIVTKLDGDTRGGAALSIKAVTGKPILYVGMGEKLSDLEQFYPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|296111749|ref|YP_003622131.1| signal recognition particle protein Ffh [Leuconostoc kimchii IMSNU 11154] gi|295833281|gb|ADG41162.1| signal recognition particle protein Ffh [Leuconostoc kimchii IMSNU 11154] Length = 491 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/271 (29%), Positives = 132/271 (48%), Gaps = 17/271 (6%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ +K V + K D+ Q+++ V++ + + + P N Sbjct: 39 LLEADVNYDTVKKFVANVREKASGADILEGLNPAQQIVKIVNDELTATMGEEAVPLNKS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P +I++ G+ G GKTT + KL+ K+ ++ + +L A D +R AAIDQL+I Sbjct: 98 PKIPTIIMMAGLQGAGKTTTVAKLAYKLKKESQARPLLIAADVYRPAAIDQLEILG--RD 155 Query: 167 ADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 D ++G++ + + QA K D + IDTAGRL + +LM + + + K Sbjct: 156 LDIPVFQLGTEVNPRDIVRQGLAQAAENKNDYVFIDTAGRLQIDDVLMQELKDVAEIAK- 214 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P +L +DA TGQNA + F A TG+++TK+DG RGG + I Sbjct: 215 -----PDEILLTVDAMTGQNAAETAKGFSASLDLTGVVLTKLDGDTRGGAALSIRDVTGK 269 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE DL+ F ++ I G D Sbjct: 270 PIKFVGQGEKPTDLDVFYPDRMASRILGMGD 300 >gi|297526052|ref|YP_003668076.1| GTP-binding signal recognition particle SRP54 G- domain protein [Staphylothermus hellenicus DSM 12710] gi|297254968|gb|ADI31177.1| GTP-binding signal recognition particle SRP54 G- domain protein [Staphylothermus hellenicus DSM 12710] Length = 444 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/203 (34%), Positives = 102/203 (50%), Gaps = 6/203 (2%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 V+L+VG+ G GKTT KL+ G +V L DT+R AA DQLK ++ Sbjct: 102 VMLLVGLQGSGKTTTAAKLAYYYKLEGYRVGLVTADTYRPAAYDQLKQLGEQIGVPVYGE 161 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 DA +A + ++ D++I+DTAGR H L+ + ++ +K P Sbjct: 162 PNNKDAVEIARRGVEYFVSRGFDIVIVDTAGRHHREEDLLKEMREIAENIK------PDE 215 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 V+ V+DA GQ A + FH +I+TK+DGTA+GGG + V + F+G G Sbjct: 216 VVLVIDAAIGQQAHNLAKKFHTATPIGSIIVTKLDGTAKGGGALSAVAVTGATIKFIGTG 275 Query: 293 EGINDLEPFVAKDFSAVITGCLD 315 E I++LE F F A I G D Sbjct: 276 EKIDELEVFRPPRFVARILGIGD 298 >gi|203288125|ref|YP_002223140.1| signal recognition particle protein [Borrelia recurrentis A1] gi|201085345|gb|ACH94919.1| signal recognition particle protein [Borrelia recurrentis A1] Length = 449 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 108/207 (52%), Gaps = 6/207 (2%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 ++ IL++G+ G GKTT KL+ ++ KV+L A DTFR+AAI+QLK+ + + Sbjct: 99 NKLSCILMLGLQGSGKTTTCAKLAMRLKSENRKVLLVAADTFRAAAIEQLKVLGAQINIS 158 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 E + ++ + A+ + D +IIDT GRL +L+ I + ++ Sbjct: 159 VFALENEDSPIKVVKKSIEYARVELFDTVIIDTRGRLEVEDLLLREIIDIKNIV------ 212 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P + V DA TGQ A+ + F+ G TG+I TK D ARGG ++ + +P+ F Sbjct: 213 VPTETILVADAMTGQVAVNIAKKFNESVGITGVIFTKFDSDARGGAILSLKTICGVPIKF 272 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +GVGE DL+ F S+ I G D Sbjct: 273 VGVGEKPEDLDVFYPDRVSSRILGMGD 299 >gi|254420786|ref|ZP_05034510.1| signal recognition particle protein [Brevundimonas sp. BAL3] gi|196186963|gb|EDX81939.1| signal recognition particle protein [Brevundimonas sp. BAL3] Length = 520 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/215 (33%), Positives = 115/215 (53%), Gaps = 8/215 (3%) Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKI 160 P N + + P V+L+ G+ G GKTT KL+ +++ K VM+A+ DT R AA++QL Sbjct: 93 PLNTNATP-PAVVLMAGLQGSGKTTTSAKLALRLTKFDRKKVMMASLDTRRPAAMEQLAQ 151 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 + + G A + A + A+ + DVLI+DTAGR+ + LM + ++ Sbjct: 152 LGKQIDVAVLPIVAGESAVQITRRALQSAKLQGFDVLILDTAGRITLDEGLMNEVAEVAE 211 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 + K P L V D+ TGQ+A+R FHA TGL++T+ DG RGG ++ + Sbjct: 212 IAK------PVETLLVADSLTGQDAVRTAAAFHARLPLTGLVLTRADGDGRGGAMLSMRA 265 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P+ +LG GE ++ L+ F A+ + I G D Sbjct: 266 VTGLPIKYLGAGEKVDALDVFDARRVAGRILGQGD 300 >gi|226430|prf||1512311A SRP protein 54kD Length = 504 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A E ++ + + +++I+DT+GR L L+ + Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE------ERLQVSNAIQ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P +++ V+D+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 214 PDNIVYVMDSDIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D EPF + F + + G D Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299 >gi|332670012|ref|YP_004453020.1| signal recognition particle protein [Cellulomonas fimi ATCC 484] gi|332339050|gb|AEE45633.1| signal recognition particle protein [Cellulomonas fimi ATCC 484] Length = 535 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 92/318 (28%), Positives = 151/318 (47%), Gaps = 30/318 (9%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 FA+ S +L ++ + RL D E+ L+ +D+ V V + + + + Sbjct: 2 FATLSDRLTSTFKNLRTKGRLSEADIDATVREIRRALLDADVAVPVVRSFTGAVRERALS 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V++ + +L ++P P VIL+ G+ G GKTT+ GKL Sbjct: 62 AEVSQALNPAQQVVKIVNDELVAILGGQNRPLAM-AKRPPTVILLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-----------IGSDAAA 180 + + + G +L A D R A+ QL++ +R G+D A Sbjct: 121 ALHLKNQGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPHPGNQGADDYLPAGADPVA 180 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 +A + + A+ ++ DVLI+DTAGRL ++ LM IR D P VL V+DA Sbjct: 181 VARQGLETARTRQHDVLIVDTAGRLGVDAELMQQASD-IR-----DAVEPDEVLFVIDAM 234 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQ+A+ + F G TG++++K+DG ARGG + + P+ F GE + D E Sbjct: 235 IGQDAVATAQAFADGVGFTGVVLSKLDGDARGGAALSVASVTGRPILFASTGEKLTDFEV 294 Query: 301 FVAKDFSAVITGCLDYGE 318 F ++ I LD G+ Sbjct: 295 FHPDRMASRI---LDMGD 309 >gi|187930124|ref|YP_001900611.1| signal recognition particle protein [Ralstonia pickettii 12J] gi|187727014|gb|ACD28179.1| signal recognition particle protein [Ralstonia pickettii 12J] Length = 471 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 111/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +IL+ G+ G GKTT +GKL+K + + K V+ + D +R AAI QLK +++ ADF Sbjct: 114 PAIILMAGLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 173 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S+ +A A A+ DVLI+DTAGRL + +M I + LK Sbjct: 174 FPSQPDQKPVDIAAAALDWAKKHYHDVLIVDTAGRLGIDEAMMQEIAALHAKLK------ 227 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG ARGG + + P+ F+ Sbjct: 228 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDARGGAALSVRHITGKPIKFV 287 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LEPF + I G D Sbjct: 288 GVAEKLDGLEPFYPDRMAQRILGMGD 313 >gi|29347011|ref|NP_810514.1| putative signal recognition protein [Bacteroides thetaiotaomicron VPI-5482] gi|253572648|ref|ZP_04850049.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|29338909|gb|AAO76708.1| putative signal recognition protein [Bacteroides thetaiotaomicron VPI-5482] gi|251837780|gb|EES65870.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 440 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/265 (29%), Positives = 138/265 (52%), Gaps = 13/265 (4%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99 V E L+D+ L+ +D+ VA+ + + K ++V + + + +++H L L Sbjct: 26 NVAETLKDVRKALLDADVNYKVAKTFTDTVKEKAIGQNVLTAVKPSQLMVKIVHDELTQL 85 Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156 + + RP VIL+ G+ G GKTT GKL++ + + K +L A D +R AAI+ Sbjct: 86 MGGETVEINLESRPAVILMSGLQGSGKTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIE 145 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL++ A++ + +A A ++A+AK D++I+DTAGRL + +M I Sbjct: 146 QLRVLAEQIEVPMYSELDSKNPVEIAQHAIQEAKAKGYDLVIVDTAGRLAVDEQMMNEIT 205 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + + P +L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + Sbjct: 206 AIKEAIN------PDEILFVVDSMTGQDAVNTAKEFNERLDFNGVVLTKLDGDTRGGAAL 259 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301 I P+ F+G GE ++ ++ F Sbjct: 260 SIRSVVNKPIKFVGTGEKLDAIDQF 284 >gi|304415130|ref|ZP_07395856.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Candidatus Regiella insecticola LSR1] gi|304283012|gb|EFL91449.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Candidatus Regiella insecticola LSR1] Length = 453 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 93/287 (32%), Positives = 140/287 (48%), Gaps = 18/287 (6%) Query: 39 RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95 R +D ++ L ++ L+ +D+ + V + L K A V + L EL+ + Sbjct: 21 RLTEDNIKNTLREIRIALLEADVALPVVNDFIN--LIKERAVGREVNKSLTPGQELVKIV 78 Query: 96 LMPLSKPF---NWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGD 148 L+ N + + P VIL+ G+ GVGKTT + KL K + + K V++ + D Sbjct: 79 KDELTSAMGKVNSELNLATQPPAVILMAGLQGVGKTTSVAKLGKFLKEKQKKKVLVVSAD 138 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 +R AAI QL+ A DF S + + A + A+ K DVLI+DTAGRLH + Sbjct: 139 VYRPAAIKQLETLAQGVGIDFFASNLHQKPIDIVNLALETAKLKFYDVLIVDTAGRLHVD 198 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 +M I ++ + P L V+DA TGQ+A + F+ TG+I+TK+DG Sbjct: 199 ETMMDEIKQLHSAIN------PVETLFVVDAMTGQDAANIAKSFNDALPLTGVILTKVDG 252 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ARGG + I P+ FLGVGE LE F ++ I G D Sbjct: 253 DARGGAALSIRHITGKPIKFLGVGEKSEALEAFHPDRVASRILGMGD 299 >gi|254689978|ref|ZP_05153232.1| Ffh, signal recognition particle protein [Brucella abortus bv. 6 str. 870] gi|260755514|ref|ZP_05867862.1| signal recognition particle protein [Brucella abortus bv. 6 str. 870] gi|260675622|gb|EEX62443.1| signal recognition particle protein [Brucella abortus bv. 6 str. 870] Length = 523 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GK++K++++ K V++A+ DT R AA +QL+ +T D Sbjct: 100 PVVIMMVGLQGSGKTTTTGKIAKRLTECQRKRVLMASLDTRRPAAQEQLRQLGLQTGVDT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ DV+I+DTAGR H + LM + + + Sbjct: 160 LPIIAGQSPVEIARRAVQAAKLGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH +L V D+ TGQ+A+ F G TG+++T+MDG RGG + + P+ + Sbjct: 214 PHEILLVADSLTGQDAVNLARNFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GE ++ LE F K + I G D Sbjct: 274 ATGEKMDALEEFYPKRIADRILGMGD 299 >gi|158312999|ref|YP_001505507.1| signal recognition particle protein [Frankia sp. EAN1pec] gi|158108404|gb|ABW10601.1| signal recognition particle protein [Frankia sp. EAN1pec] Length = 521 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 90/307 (29%), Positives = 148/307 (48%), Gaps = 19/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + T + RL D E+ L+ +D+ + V + V + + Sbjct: 2 FDTLSSRLDKVFTSLRGRGRLTDADIDATAREIRVALLEADVALPVVRGFVAAIRERARG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L + + + P VIL+ G+ G GKTT+ GKL Sbjct: 62 AEVSTSLNPAQQVIKIVNEELVAILGGGTTTLRFAKTP-PTVILLAGLQGTGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188 + + G +L A D R A++QL++ R + E G+ D +A +A Sbjct: 121 GRWLRAQGHTPLLVAADLQRPNAVNQLQVVGQRAGVEVFAPEPGNGVGDPVRVARDALAH 180 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ DV+++DTAGRL + LM IR D +P +L VLDA GQ+A+ Sbjct: 181 ARRHVFDVVVVDTAGRLGVDEELMRQAAD-IR-----DAVSPDEILFVLDAMIGQDAVST 234 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F G TG+++TK+DG ARGG + + P+ F GE ++D + F + ++ Sbjct: 235 AQAFADGVGFTGVVLTKLDGDARGGAALSVARVTGAPIMFASTGETLDDFDVFHPERMAS 294 Query: 309 VITGCLD 315 I G D Sbjct: 295 RILGMGD 301 >gi|327462217|gb|EGF08544.1| signal recognition particle protein [Streptococcus sanguinis SK1] Length = 524 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 110/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G+D A + + +QA+A D ++IDTAGRL + LM + ++ L Sbjct: 159 PVFALGTDVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F++ TG+I+TK+DG RGG + + P+ Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|322411711|gb|EFY02619.1| signal recognition particle subunit FFH/SRP54 [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 520 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 88/308 (28%), Positives = 158/308 (51%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L++ I ++L + V +E+ L+ +D+ + V + ++ + + Sbjct: 3 FESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130 ++ Q++L V+E + +L S+ D S + P +I++VG+ G GKTT GK Sbjct: 63 HEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTTFAGK 120 Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187 L+ K+ + + ++ A D +R AAIDQLK + + ++G+D +A + + + Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVRKGLE 178 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 QA+ + D ++IDTAGRL + LM + +R +K L P+ +L V+D+ GQ A Sbjct: 179 QARENRNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQEAAN 232 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 F+ TG+++TK+DG RGG + + P+ + G GE I D+E F S Sbjct: 233 VAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKYTGTGEKITDIETFHPDRMS 292 Query: 308 AVITGCLD 315 + I G D Sbjct: 293 SRILGMGD 300 >gi|71894046|ref|YP_278154.1| signal recognition particle [Mycoplasma synoviae 53] gi|71850834|gb|AAZ43443.1| signal recognition particle [Mycoplasma synoviae 53] Length = 455 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/283 (30%), Positives = 142/283 (50%), Gaps = 25/283 (8%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV-----LYDVSELIHKMLMPL 99 + E++ L+ +D+ + K+V+E ++K K +S + + ++++ H L+ + Sbjct: 30 ITREIKLALLEADVNL----KVVKEFISKVKEKALSSEIIGKLNPSQQMTKIFHDELVSI 85 Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS-----KKMSDAGLKVMLAAGDTFRS 152 K +P VI++ G+ G GKTT KL+ KKM+ + L L A D +R Sbjct: 86 LGGKIKEIKLDKKPTVIMMCGLQGSGKTTTAAKLAFYLRKKKMAASPL---LVAADIYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAIDQL A D+ I + A + A +QA+ K D++IIDTAGRL + LM Sbjct: 143 AAIDQLVSLAKSAQMDYFQMGINTPAEDIVKAALEQARDNKNDLIIIDTAGRLSIDEKLM 202 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + + ++ +P +L V DA +GQ+ + FH +G I+TK+D ARG Sbjct: 203 QELWNIKQI------ASPEEILFVADALSGQDIINVASAFHDKLKLSGSIITKLDSDARG 256 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + I +P+ F+G GE I++++ F + I G D Sbjct: 257 GAALSIRFILNLPIKFIGTGEKISNIDLFYPDRMADRILGMGD 299 >gi|300706383|ref|XP_002995462.1| hypothetical protein NCER_101628 [Nosema ceranae BRL01] gi|239604578|gb|EEQ81791.1| hypothetical protein NCER_101628 [Nosema ceranae BRL01] Length = 466 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/292 (28%), Positives = 146/292 (50%), Gaps = 17/292 (5%) Query: 32 ITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV---SVQRVL 85 ++ + SS DD ++ ++D+ LI S++ + +KI L K ++++ + Q+V+ Sbjct: 13 LSRLFSSNITDDSIKYIIDDICTSLINSNVNPMLVEKIRNNLNEKILSENIQGFNKQKVI 72 Query: 86 YDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143 +EL+ ++ P K + + +V++ VG+ G GKTT I K + GLKV Sbjct: 73 ETAVFNELVS-LVDPKIKSKELE-KGKSNVVVFVGLQGAGKTTSICKYANYYKKKGLKVA 130 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 L DTFR+ A +Q+K A + F SE +D +A E + + + D++ +DT+G Sbjct: 131 LVCADTFRAGAFEQIKQNAMKIKVPFYGSE-EADPVVVALEGVSRFKKEDFDLICVDTSG 189 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 R L + +I + P +++ V+DA GQ+A Q F +I+ Sbjct: 190 RHTQEKDLFTEMTDIINAV------TPDNIIFVMDAGIGQSAEDQALGFKNAVNVGSIII 243 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +K+DGT + GG I V + + P+ F+G GE + D E F K F + G D Sbjct: 244 SKIDGTVKAGGAISSVASIQCPILFVGTGENMEDFEVFEPKGFVGRMLGMGD 295 >gi|268564306|ref|XP_002647138.1| Hypothetical protein CBG16436 [Caenorhabditis briggsae] Length = 496 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 90/300 (30%), Positives = 145/300 (48%), Gaps = 29/300 (9%) Query: 29 KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---------VEELL----TKRY 75 K G +I+ LD ++E + LI SD+ + + +++ EE++ +RY Sbjct: 16 KLGQNTVINEEELDLMLKE-VCTALIESDVHIRLVKQLKDNVKNAINFEEIVGGANKRRY 74 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 +Q+ +++ EL+ K++ P PF R +V + VG+ G GKTT K++ Sbjct: 75 -----IQKTVFN--ELL-KLVDPGVTPFTPTKGKR-NVFMFVGLQGSGKTTTCSKMAYYY 125 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 G K L DTFR+ A DQLK A + F S D +A E ++ + + Sbjct: 126 QRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYSEIDPVKIAAEGVEKFTKEGFE 185 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 ++I+DT+GR + L +M++V + P +V+ V+DA+ GQ Q F Sbjct: 186 IIIVDTSGRHKQEASLFE---EMLQVSNAV---TPDNVVFVMDASIGQACEAQARAFSQT 239 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+D A+GGG + V K PV F+G GE I+D E F K F + G D Sbjct: 240 VDVASVIITKLDSHAKGGGALSAVAVTKSPVIFIGTGEHIDDFEIFKPKSFVQKLLGMGD 299 >gi|315604551|ref|ZP_07879614.1| signal recognition particle protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315313563|gb|EFU61617.1| signal recognition particle protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 527 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/257 (29%), Positives = 131/257 (50%), Gaps = 15/257 (5%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 LI +D+ + V ++ ++ K Y S Q+V+ V + + ++L ++ N+ Sbjct: 38 LIDADVALPVVRQFTTQVRDKAYGAARSKALNPGQQVVSIVHDELVEILGGATRELNFAE 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P V ++ G+ G GKTT+ GKL K + + G V+L A D R A+ QL++ +R Sbjct: 98 SG-PTVFMLAGLQGAGKTTLAGKLGKWLREEGKTVLLVASDLQRPNAVQQLQVVGERAGV 156 Query: 168 DFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 E G+ + +A A+ ++V+I+DTAGRL + +M + + Sbjct: 157 KVWAPEPGNGVGNPVEVARSGVDFARKSGINVVIVDTAGRLGVDQEMMD------QAIAI 210 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 D +PH ++ VLDA GQ+A+ F G TG++++K+DG ARGG + + Sbjct: 211 RDAVSPHEIMFVLDAMVGQDAVSTSTAFRDGVGFTGVVLSKLDGDARGGAALSVRGVTGA 270 Query: 285 PVYFLGVGEGINDLEPF 301 P+ F GEG++D E F Sbjct: 271 PILFASTGEGLDDFERF 287 >gi|196016017|ref|XP_002117863.1| signal recognition particle 54 [Trichoplax adhaerens] gi|190579532|gb|EDV19625.1| signal recognition particle 54 [Trichoplax adhaerens] Length = 505 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/269 (28%), Positives = 132/269 (49%), Gaps = 14/269 (5%) Query: 53 LIRSDIGVAVAQKIVEELLT----KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF 107 L+ SD+ V + +++ E + + A ++ +R+L V + K++ P K W Sbjct: 39 LLESDVNVQLVKRLRENVRAAIDFEEMAAGLNKRRILQRAVFNELCKLVDPGVKA--WQP 96 Query: 108 SH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + + +VI+ VG+ G GKTT K++ G K L DTFR+ A DQLK + + Sbjct: 97 TKGKNNVIMFVGLQGSGKTTTCTKMAHYYQRKGWKTCLICADTFRAGAFDQLKQNSTKAR 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 F S D +A++ ++ + + +++I+DT+GR L +L+ + Sbjct: 157 IPFYGSYTEMDPVVIAHDGVEKFKKENFEIIIVDTSGRHKQEDSLFE------EMLQLSN 210 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P +++ V+DAT GQ Q F +I+TK+DG A+GGG + V + P+ Sbjct: 211 TITPDNIIFVMDATIGQACEAQARAFKEKVDVASVIITKLDGHAKGGGSLSAVAATRSPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G GE I D E F + F + + G D Sbjct: 271 IFIGTGEHIEDFEQFKTRPFISKLLGMGD 299 >gi|169630318|ref|YP_001703967.1| Signal recognition particle protein Ffh [Mycobacterium abscessus ATCC 19977] gi|169242285|emb|CAM63313.1| Signal recognition particle protein Ffh [Mycobacterium abscessus] Length = 523 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 90/316 (28%), Positives = 152/316 (48%), Gaps = 28/316 (8%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + + + RL D + L+ +D+ + V + + + + Sbjct: 2 FESLSDRLTDALAGLRGKGRLSDADIDATCRTIRLALLEADVALPVVRTFITRIKERAKG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L ++ + + P V+++ G+ G GKTT+ GKL Sbjct: 62 AEVSGALNPAQQVVKIVNEELIGILGGETRQLAFAKTP-PTVVMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS---------EIGS---DAA 179 +K + G +L A D R A++QL++ +R E+GS D Sbjct: 121 AKWLKGQGHTPLLVACDLQRPGAVNQLQVVGERAGVSVYAPHPGTADGGLEVGSLVGDPV 180 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+A + A+A+ DV+++DTAGRL ++ LM + R+ +DP VL VLDA Sbjct: 181 AVARDGLAHAKAQHFDVVLVDTAGRLGIDAELMD---QAARIRDAVDPD---EVLFVLDA 234 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 GQ+A+ E F G TG+++TK+DG ARGG + + P+ F GE + D + Sbjct: 235 MIGQDAVSTAEAFREGVGFTGVVLTKLDGDARGGAALSVREITGTPILFASTGEKLEDFD 294 Query: 300 PFVAKDFSAVITGCLD 315 F ++ I G D Sbjct: 295 VFHPDRMASRILGMGD 310 >gi|241664229|ref|YP_002982589.1| signal recognition particle protein [Ralstonia pickettii 12D] gi|240866256|gb|ACS63917.1| signal recognition particle protein [Ralstonia pickettii 12D] Length = 471 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 111/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +IL+ G+ G GKTT +GKL+K + + K V+ + D +R AAI QLK +++ ADF Sbjct: 114 PAIILMAGLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 173 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S+ +A A A+ DVLI+DTAGRL + +M I + LK Sbjct: 174 FPSQPDQKPVDIAAAALDWAKKHYHDVLIVDTAGRLGIDEAMMQEIAALHARLK------ 227 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG ARGG + + P+ F+ Sbjct: 228 PAETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDARGGAALSVRHITGKPIKFV 287 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LEPF + I G D Sbjct: 288 GVAEKLDGLEPFYPDRMAQRILGMGD 313 >gi|37362777|gb|AAQ91346.1| signal recognition particle [Lactobacillus casei] Length = 221 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/203 (35%), Positives = 107/203 (52%), Gaps = 8/203 (3%) Query: 114 ILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 I++VG+ G GKTT +GKL+ M + + +L AGD +R AAI+QLK + V S Sbjct: 1 IMMVGLQGTGKTTTVGKLANYLMKNEKARPLLIAGDIYRPAAIEQLKQIGQQLDVP-VYS 59 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 E D A + ++A K D ++IDTAGRL + LM + ++ V P + Sbjct: 60 EDNQDVAEIVKHGLEEADKNKNDYVLIDTAGRLEIDEQLMDELKRVTEVAH------PDN 113 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 L V+DA TGQ A + E F+ TG+++TK+DG RGG + I +P+ F G G Sbjct: 114 TLLVVDAMTGQAATQVAEGFNNDLDLTGIVLTKLDGDTRGGAALSIRAVTGLPIIFTGQG 173 Query: 293 EGINDLEPFVAKDFSAVITGCLD 315 E + DL F ++ I G D Sbjct: 174 EKLTDLSTFHPDRMASRILGMGD 196 >gi|226293236|gb|EEH48656.1| signal recognition particle protein [Paracoccidioides brasiliensis Pb18] Length = 651 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 87/283 (30%), Positives = 138/283 (48%), Gaps = 40/283 (14%) Query: 49 LEDLLIRSDIG----VAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101 +E+ L++ ++ V + + +V EL+ K+ A S+ L E + K+L P S Sbjct: 362 MEEHLLKKNVAREAAVRLCEGVVHELVGKKTASFQSIDSALRSAMESSLRKILTPTSSLD 421 Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 P + RP+VI +VGVNGVGK+T + K+ + +V++ A DTFR Sbjct: 422 LLREIEAVTSPSSSQRQRRPYVISIVGVNGVGKSTNLSKICFFLLQNNYRVLITACDTFR 481 Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200 S A++QL++ A R + E G DAA +A +A A A DV++ID Sbjct: 482 SGAVEQLRVHA-RNLQELSSRENVGHVGLYQKGYGKDAANVAKDAVAYATANSFDVVLID 540 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH----AVA 256 TAGR HN+ LM+ + K + + P + V +A G +++ Q F+ A Sbjct: 541 TAGRRHNDQRLMSSLEKFAKFAQ------PDKIFMVGEALVGTDSVMQARNFNQAFGAGR 594 Query: 257 GTTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G G I++K D G L+ +V IP+ FLG+G+ DL Sbjct: 595 GLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGIGQHYGDL 637 >gi|309783054|ref|ZP_07677773.1| signal recognition particle protein [Ralstonia sp. 5_7_47FAA] gi|308918162|gb|EFP63840.1| signal recognition particle protein [Ralstonia sp. 5_7_47FAA] Length = 471 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 111/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +IL+ G+ G GKTT +GKL+K + + K V+ + D +R AAI QLK +++ ADF Sbjct: 114 PAIILMAGLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 173 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S+ +A A A+ DVLI+DTAGRL + +M I + LK Sbjct: 174 FPSQPDQKPVDIAAAALDWAKKHYHDVLIVDTAGRLGIDEAMMQEIAALHAKLK------ 227 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG ARGG + + P+ F+ Sbjct: 228 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDARGGAALSVRHITGKPIKFV 287 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LEPF + I G D Sbjct: 288 GVAEKLDGLEPFYPDRMAQRILGMGD 313 >gi|290580502|ref|YP_003484894.1| signal recognition particle protein subunit [Streptococcus mutans NN2025] gi|254997401|dbj|BAH88002.1| signal recognition particle protein subunit [Streptococcus mutans NN2025] Length = 516 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 88/307 (28%), Positives = 154/307 (50%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L+ ++ R+L + V +E+ L+ +D+ + V ++ ++ + + Sbjct: 3 FESLTERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKEFIKRVRKRAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V Q+++ V+E + +L + S P +I++VG+ G GKTT GKL Sbjct: 63 HEVIDTLDPSQQIIKIVNEELTAVLGSETAEIEKS-SKIPTIIMMVGLQGAGKTTFAGKL 121 Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQ 188 + K+ + + ++ A D +R AAIDQLK + + ++G+D +A + + Q Sbjct: 122 ANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVEIVSQGLAQ 179 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ + D ++IDTAGRL + LM + R +K L P+ +L V+D+ GQ A Sbjct: 180 AKENRNDYVLIDTAGRLQIDEKLMTEL----RDIKAL--ANPNEILLVVDSMIGQEAANV 233 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 F+ TG+I+TK+DG RGG + + P+ F G GE I D+E F S+ Sbjct: 234 AREFNQQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSS 293 Query: 309 VITGCLD 315 I G D Sbjct: 294 RILGMGD 300 >gi|253999931|ref|YP_003051994.1| signal recognition particle protein [Methylovorus sp. SIP3-4] gi|253986610|gb|ACT51467.1| signal recognition particle protein [Methylovorus sp. SIP3-4] Length = 450 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/285 (29%), Positives = 142/285 (49%), Gaps = 13/285 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL--YDVSELIH 93 +S + D +RE + L+ +D+ + V ++ + ++ + +DV +Q + V +++H Sbjct: 22 LSEENISDAMRE-VRMALLEADVALPVVKEFIAQVKERAVGRDV-LQSLTPGQAVIQVVH 79 Query: 94 KMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + L L N + P +IL+ G+ G GKTT KL++ + + KV+LA+ D + Sbjct: 80 EELTRLMGEQNVGLNLAAVPPAIILMAGLQGSGKTTTSAKLARLLKEQKKKVLLASADVY 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAI+QLK A D S +A A+ DV+I DTAGRL + Sbjct: 140 RPAAIEQLKTLAKSLDVDCFDSNATQKPQDIAANVLDFAKRHFYDVVIFDTAGRLGIDEA 199 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 +M I ++ +L P L V+DA GQ+A+ F TG+I+TK+DG A Sbjct: 200 MMGEIQQLHALLN------PVETLFVVDAMQGQDAVNTARAFGETLPLTGVILTKLDGDA 253 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + + P+ F+GV E ++ LE F + ++ + G D Sbjct: 254 RGGAALSVRHITGKPIKFVGVSEKVDGLEVFHPERMASRVLGMGD 298 >gi|118474225|ref|YP_892203.1| signal recognition particle protein [Campylobacter fetus subsp. fetus 82-40] gi|261885666|ref|ZP_06009705.1| signal recognition particle protein [Campylobacter fetus subsp. venerealis str. Azul-94] gi|118413451|gb|ABK81871.1| signal recognition particle protein [Campylobacter fetus subsp. fetus 82-40] Length = 448 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 68/195 (34%), Positives = 105/195 (53%), Gaps = 6/195 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S+ P V+L+ G+ G GKTT KL+ + KV++AA D R AA++QL+ Sbjct: 95 SNPPTVVLMAGLQGGGKTTTTVKLANYLKVRKKKVLIAACDLQRLAAVEQLRQLCTANEL 154 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + E +D +A A ++A+ + DVL++DTAGRL + LM+ I + + Sbjct: 155 ELFYMENENDPIKVAKNALQKAKNELYDVLLVDTAGRLAIDETLMSQIKDIKSTIN---- 210 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 PH + V DA +GQ+ ++ F+ G TG+I++K D +GG I I IP+ Sbjct: 211 --PHEIFYVADAMSGQDGVKTAASFNEALGITGVILSKFDADTKGGVAIGIAKQINIPLR 268 Query: 288 FLGVGEGINDLEPFV 302 F+GVGE DLE F+ Sbjct: 269 FVGVGEKPADLESFI 283 >gi|319892235|ref|YP_004149110.1| Signal recognition particle, subunit Ffh SRP54 [Staphylococcus pseudintermedius HKU10-03] gi|317161931|gb|ADV05474.1| Signal recognition particle, subunit Ffh SRP54 [Staphylococcus pseudintermedius HKU10-03] Length = 455 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 109/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT GKL+ M K +L AGD +R AAI+QL+ + Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPLLVAGDIYRPAAINQLQTVGKQIDIPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + A + A+A+ +D +IIDTAGRLH + LM + ++ + K Sbjct: 161 YSEGDQVPPQQIVQNALQHAKAEHLDFVIIDTAGRLHIDEALMNELQEVKEISK------ 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P ++ V+DA TGQ+A+ E F TG+ +TK+DG RGG + I + P+ F+ Sbjct: 215 PDEIMLVVDAMTGQDAVNVAESFDQQLDVTGVTLTKLDGDTRGGAALSIRAVTEKPIKFV 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+ E ++ LE F + ++ I G D Sbjct: 275 GMSEKLDGLELFHPERMASRILGMGD 300 >gi|300741688|ref|ZP_07071709.1| signal recognition particle protein [Rothia dentocariosa M567] gi|300380873|gb|EFJ77435.1| signal recognition particle protein [Rothia dentocariosa M567] Length = 528 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 91/316 (28%), Positives = 150/316 (47%), Gaps = 28/316 (8%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L ++ RL D E+ L+ +D+ V V +K + + Sbjct: 2 FNSLSDRLTATFKNLRGKGRLSEADIDATVREIRRALLDADVAVPVVRKFAAHIKERALG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+++ V+E + +L ++ N + P +I++ G+ G GKTT+ GKL Sbjct: 62 AEVSEALNPSQQIVKIVNEELITILGGQTRRINMAKTG-PTIIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------SDAAALA 182 +K + G +L A D R A+ QLK+ +R G D +A Sbjct: 121 AKWLKGQGHTPILVASDLQRPNAVTQLKVVGERAGVPVFAPHPGVTSEFDTPTGDPVQVA 180 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 + +A+AK DV+I+DTAGRL ++ LM + R ++ D P VL V+DA G Sbjct: 181 RDGVAEARAKLHDVVIVDTAGRLGVDAELM----QQARNIR--DAIEPQEVLFVIDAMIG 234 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 Q+A+ F+ TG++++K+DG ARGG + + P+ F GE ++D E F Sbjct: 235 QDAVNTANAFNEGVDFTGVVLSKLDGDARGGAALSVASVTGKPIMFASTGENVDDFEQFH 294 Query: 303 AKDFSAVITGCLDYGE 318 ++ I LD G+ Sbjct: 295 PDRMASRI---LDMGD 307 >gi|298386283|ref|ZP_06995839.1| signal recognition particle protein [Bacteroides sp. 1_1_14] gi|298260660|gb|EFI03528.1| signal recognition particle protein [Bacteroides sp. 1_1_14] Length = 440 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/265 (29%), Positives = 138/265 (52%), Gaps = 13/265 (4%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99 V E L+D+ L+ +D+ VA+ + + K ++V + + + +++H L L Sbjct: 26 NVAETLKDVRKALLDADVNYKVAKTFTDTVKEKAIGQNVLTAVKPSQLMVKIVHDELTQL 85 Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156 + + RP VIL+ G+ G GKTT GKL++ + + K +L A D +R AAI+ Sbjct: 86 MGGETVEINLESRPAVILMSGLQGSGKTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIE 145 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL++ A++ + +A A ++A+AK D++I+DTAGRL + +M I Sbjct: 146 QLRVLAEQIEVPMYSELDSKNPVEIAQHAIQEAKAKGYDLVIVDTAGRLAVDEQMMNEIT 205 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + + P +L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + Sbjct: 206 AIKEAIN------PDEILFVVDSMTGQDAVNTAKEFNVRLDFNGVVLTKLDGDTRGGAAL 259 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301 I P+ F+G GE ++ ++ F Sbjct: 260 SIRSVVNKPIKFVGTGEKLDAIDQF 284 >gi|221059453|ref|XP_002260372.1| signal recognition particle [Plasmodium knowlesi strain H] gi|193810445|emb|CAQ41639.1| signal recognition particle, putative [Plasmodium knowlesi strain H] Length = 500 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 88/284 (30%), Positives = 138/284 (48%), Gaps = 19/284 (6%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVL--YDVSEL 91 D + E L+++ LI +DI ++ + I + K+ K++ + +R++ Y V EL Sbjct: 25 DSAIEECLKEVIRALILADINISYLKDIKSNI-KKKIEKNIDLYGNNKKRLVQQYVVEEL 83 Query: 92 IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 I+ L+ K +VIL VG+ G GKTT K + G K L DTFR Sbjct: 84 IN--LLEGKKESYVPKKGSRNVILFVGLQGSGKTTTCTKFAHYYQKKGFKTALVCADTFR 141 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 + A DQLK A + F S D +A + +K D++I+D++GR S L Sbjct: 142 AGAFDQLKQNAAKVKIPFYGSYSEVDPVKIASDGVNAFLKEKYDLIIVDSSGRHKQESEL 201 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 +M +V ++P ++ V+D+ GQ+ Q F +I+TK+DG A+ Sbjct: 202 FE---EMKQVESSINPE---EIVFVIDSHIGQSCHDQAMAFKNSVTLGSIIITKIDGHAK 255 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 GGG + V + P+ F+G GE IND E F AK F + + G D Sbjct: 256 GGGALSAVASTGCPITFIGTGEHINDFEKFEAKSFVSRLLGLGD 299 >gi|322373056|ref|ZP_08047592.1| signal recognition particle protein [Streptococcus sp. C150] gi|321278098|gb|EFX55167.1| signal recognition particle protein [Streptococcus sp. C150] Length = 520 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 105/206 (50%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + M+ A D +R AAIDQLK + + Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLIKEQEARPMMIAADIYRPAAIDQLKTLGQQINVPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + A + +QA+A K D ++IDTAGRL + LM + + Sbjct: 161 FDMGTETPAVEIVKNGLEQARANKNDYVLIDTAGRLQIDETLMQELHDIKNFAH------ 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P+ +L V+D+ GQ A + F+ TG+++TK+DG RGG + I P+ F Sbjct: 215 PNEILLVVDSMIGQEAANVAKEFNEQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFT 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I D+E F S+ I G D Sbjct: 275 GTGEKITDIETFHPDRMSSRILGMGD 300 >gi|281492192|ref|YP_003354172.1| signal recognition particle subunit Ffh [Lactococcus lactis subsp. lactis KF147] gi|281375863|gb|ADA65357.1| Signal recognition particle, subunit Ffh [Lactococcus lactis subsp. lactis KF147] Length = 518 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 106/206 (51%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+KK+ + + ++ A D +R AAIDQLK ++ Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLAKKLKEEQNARPLMIAADVYRPAAIDQLKTLGEQLEIPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + +AQ ++ D ++IDTAGRL + LM + + I+ L Sbjct: 161 YDEGTAEKPVNIVRNGLLKAQEERKDYVLIDTAGRLEIDDTLMNEL-QEIKTLAE----- 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P +L V+DA TGQ A + + F TG+I+TK+DG RGG + I P+ F Sbjct: 215 PTEILLVVDAMTGQVAAQVAKTFDEKLDITGVIITKLDGDTRGGAALSIREITGKPIKFT 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE + DLE F S+ I G D Sbjct: 275 GTGEKLTDLEVFYPDRMSSRILGMGD 300 >gi|326803882|ref|YP_004321700.1| signal recognition particle protein [Aerococcus urinae ACS-120-V-Col10a] gi|326650579|gb|AEA00762.1| signal recognition particle protein [Aerococcus urinae ACS-120-V-Col10a] Length = 491 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 87/307 (28%), Positives = 149/307 (48%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L+ + + ++ +G +RE + ++ L+ +D+ V + V ++ K Sbjct: 3 FESLSDRLQGAVEKVGKKGKISEGDLREMMREVRLALLEADVNFKVVKNFVRKVQDKALN 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 DV Q+++ V E + ++L N++ + P +I++ G+ G GKTT +GKL Sbjct: 63 SDVLESLSPTQQIVKIVDEELTELLGGEQVGINYNEAG-PTIIMMAGLQGAGKTTTVGKL 121 Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQ 188 + + + K +L A D +R AAIDQL+ + D ++G+ + +A +A Sbjct: 122 ANHLREEDHRKPLLVAADVYRPAAIDQLETIGRQL--DLPVFQLGNQVSPVDIAQKAVAY 179 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ D + IDTAGRL + LM + + + P +L +DA +GQ A Sbjct: 180 AKENNYDTIFIDTAGRLQIDQTLMDELKNIQAAVH------PDEILLTVDAMSGQEAANV 233 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F TG+++TK+DG RGG + I P+ F GVGE + D+E F S Sbjct: 234 AKTFDEELELTGVVLTKLDGDTRGGAALSIASITGKPIKFTGVGEKLEDIETFYPDRMSN 293 Query: 309 VITGCLD 315 I G D Sbjct: 294 RILGMGD 300 >gi|323464668|gb|ADX76821.1| signal recognition particle protein [Staphylococcus pseudintermedius ED99] Length = 455 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 109/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT GKL+ M K +L AGD +R AAI+QL+ + Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPLLVAGDIYRPAAINQLQTVGKQIDIPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + A + A+A+ +D +IIDTAGRLH + LM + ++ + K Sbjct: 161 YSEGDQVPPQQIVQNALQHAKAEHLDFVIIDTAGRLHIDEALMNELQEVKEISK------ 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P ++ V+DA TGQ+A+ E F TG+ +TK+DG RGG + I + P+ F+ Sbjct: 215 PDEIMLVVDAMTGQDAVNVAESFDQQLDVTGVTLTKLDGDTRGGAALSIRAVTEKPIKFV 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+ E ++ LE F + ++ I G D Sbjct: 275 GMSEKLDGLELFHPERMASRILGMGD 300 >gi|312137225|ref|YP_004004562.1| signal recognition particle subunit ffh/srp54 (srp54) [Methanothermus fervidus DSM 2088] gi|311224944|gb|ADP77800.1| signal recognition particle subunit FFH/SRP54 (srp54) [Methanothermus fervidus DSM 2088] Length = 449 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 87/280 (31%), Positives = 138/280 (49%), Gaps = 20/280 (7%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKD------VSVQRVLYDVSELIHKM 95 V+E ++DL LI++D+ V + K+ + + KR K+ + V+ V E + K+ Sbjct: 33 VKEVIKDLQRALIQADVNVKLVFKLSKSI-EKRALKEEPPKGITPKEHVIKIVYEELTKL 91 Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 L K + +P+ IL VG+ G GKTT + KL+ + G + DT+R+AA Sbjct: 92 LG--KKSYKLKIDKKPYKILFVGLQGSGKTTTVAKLAHYLRLKGYNSAVVCTDTWRTAAY 149 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 DQLK + + + LA E + K DV++ DTAGR N L+ Sbjct: 150 DQLKQLTEEINVPMYGDPNEDNPIRLAKEGLNKF--KNYDVILFDTAGRHKNEKELL--- 204 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 +M + K ++P ++ V+D T GQ A Q + F +I+TK+DG+A+GGG Sbjct: 205 DEMEMLSKEINPD---EIILVIDGTIGQQAKSQAKAFSERVKIGSIIVTKLDGSAKGGGA 261 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + V P+ F+G GE I+DLE F F + + G D Sbjct: 262 LSAVSEVGAPIKFIGTGEKIDDLEEFDPARFMSRLLGMGD 301 >gi|226356240|ref|YP_002785980.1| signal recognition particle protein [Deinococcus deserti VCD115] gi|226318230|gb|ACO46226.1| putative Signal recognition particle protein (Fifty-four protein) [Deinococcus deserti VCD115] Length = 446 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/276 (30%), Positives = 129/276 (46%), Gaps = 19/276 (6%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSELIHKMLMPL 99 E+ L+ +D+ VA+ V + K ++V +V ++++D ELI + Sbjct: 33 EIRMALLEADVNFGVAKDFVARVSEKAVGQEVLGSLNAGQTVVKLVHD--ELIETLGGKA 90 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 ++P + +V +VG+ G GKTT GKL+ G +V+L A DT R AA DQL+ Sbjct: 91 AQP---ELKSEGNVWFMVGLQGAGKTTSTGKLAAHYKSKGRRVLLVAADTQRPAARDQLE 147 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 + A + + G + + D++I+DTAGRL + LM + + Sbjct: 148 VLAKQVGVPVLKVNDGETPQETRRRLDEHLKTDFRDLVIVDTAGRLQIDEALMDQLANLQ 207 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 L+ P L V+DA TGQ AL + F +GL++TKMDG ARGG + Sbjct: 208 SELQ------PTETLLVVDAMTGQEALNVAQTFDQRVNLSGLVVTKMDGDARGGASLSAR 261 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+YF G E + LEPF + I G D Sbjct: 262 SVTGKPIYFAGTSEKLTGLEPFYPDRVAGRILGMGD 297 >gi|187925412|ref|YP_001897054.1| signal recognition particle protein [Burkholderia phytofirmans PsJN] gi|187716606|gb|ACD17830.1| signal recognition particle protein [Burkholderia phytofirmans PsJN] Length = 455 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 108/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT +GKL+K + + KV+ + D +R AAI QLK ++ ADF Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 SE +A A A+ DVL++DTAGRL + +M I + LK Sbjct: 164 FPSEPDQKPVDIARAAVDWAKRHYHDVLLVDTAGRLGIDEAMMQEITALHNTLK------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F TG+++TK+DG +RGG + + P+ F+ Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F + I G D Sbjct: 278 GVAEKLDGLEVFYPDRMANRILGMGD 303 >gi|300780916|ref|ZP_07090770.1| signal recognition particle protein [Corynebacterium genitalium ATCC 33030] gi|300532623|gb|EFK53684.1| signal recognition particle protein [Corynebacterium genitalium ATCC 33030] Length = 580 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 88/283 (31%), Positives = 137/283 (48%), Gaps = 26/283 (9%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + V + ++ + + DVS Q+V+ V E + +L ++ N Sbjct: 38 LLEADVSLTVVRAFIKRVKERALGADVSEALNPAQQVIKIVDEELTNILGGETRRLNL-A 96 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164 + P VI++ G+ G GKTT+ GKL+ + G ML A D R A+ QL+I +R Sbjct: 97 KNPPTVIMLAGLQGAGKTTLAGKLALHLKKQGHAPMLVACDLQRPGAVQQLQIVGERAGV 156 Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 TS D E+G+ D ++A + +A+ DV+IIDTAGRL + LM Sbjct: 157 RTFAPDPGTSLDSAEHEMGTSHGDPVSVAQASIDEARRTNADVVIIDTAGRLGIDETLMT 216 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + IR + P VL V+DA GQ+A+ + F TG+++TK+DG ARGG Sbjct: 217 Q-ARNIR-----NAVNPDEVLFVIDAMIGQDAVTTAQAFADGVDFTGVVLTKLDGDARGG 270 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316 + I P+ F GE + D + F S+ I G D Sbjct: 271 AALSIREVTGKPILFASTGEKLEDFDVFHPDRMSSRILGMGDL 313 >gi|240146499|ref|ZP_04745100.1| signal recognition particle protein [Roseburia intestinalis L1-82] gi|257201355|gb|EEU99639.1| signal recognition particle protein [Roseburia intestinalis L1-82] Length = 448 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 159/304 (52%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ ++ S RL +D V+ L+++ L+ +D+ V ++ V+++ + Sbjct: 3 FDSLSEKLQNVFKNLRSKGRLTEDDVKAALKEVKMALLEADVNFKVVKQFVKDVQERAIG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + +++ + +I++ G+ G GKTT K+ Sbjct: 63 QDVMNGLNPGQMVIKIVNEEMVRLMGSETTEIALRPGKELTIIMMAGLQGAGKTTTTAKI 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K+ G KV+LAA D +R AAI+QL+I ++ + + +A A + A Sbjct: 123 AGKLKAKGKKVLLAACDVYRPAAIEQLQINGEKQGVEVFSMGDKNTPVNIAKAAVEHATK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +VLIIDTAGRLH + +MA ++I++ + + A + V+DA TGQ+A+ + Sbjct: 183 NDFNVLIIDTAGRLHVDEDMMA---ELIQIKENV---AVSQTILVVDAMTGQDAVNVAKT 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F G G+++TK+DG RGG + I P+ + G+GE ++DLE F ++ I Sbjct: 237 FDEKIGIDGVVLTKLDGDTRGGAALSIRAVTGKPILYAGMGEKLSDLEQFYPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|296268962|ref|YP_003651594.1| signal recognition particle protein [Thermobispora bispora DSM 43833] gi|296091749|gb|ADG87701.1| signal recognition particle protein [Thermobispora bispora DSM 43833] Length = 508 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 148/311 (47%), Gaps = 24/311 (7%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + + S RL D E+ L+ +D+ + V + + + K A Sbjct: 2 FETLSDRLTSVFSSLRSRGRLSEADIDATCREIRIALLEADVALPVVKAFIARV--KERA 59 Query: 77 KDVSVQRVL---YDVSELIHKMLMPL--SKPFNWDFSHRPH-VILVVGVNGVGKTTVIGK 130 + V + L V +++H L+ + + F+ P VI++ G+ G GKTT+ GK Sbjct: 60 RGAEVSQALNPAQQVVKIVHDELIEVLGGETRRIRFAKTPPTVIMLAGLQGAGKTTLAGK 119 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187 L+K + D G +L A D R A+ QL + A+R E G+ D A+A ++ Sbjct: 120 LAKWLRDQGHAPLLVACDLQRPNAVQQLTVLAERAGVAIFAPEPGNGVGDPVAVARQSID 179 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ K+ DV+I+DTAGRL + +M + D P VL VLDA GQ+A+ Sbjct: 180 HAKRKQYDVVIVDTAGRLGIDEEMMRQAADI------RDAINPDEVLFVLDAMIGQDAVN 233 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 F G G+++TK+DG ARGG + + P+ F GE + D + F + Sbjct: 234 TARAFMEGVGFDGVVLTKLDGDARGGAALSVRQITGRPIMFASTGEKLEDFDVFHPDRMA 293 Query: 308 AVITGCLDYGE 318 + I LD G+ Sbjct: 294 SRI---LDMGD 301 >gi|312862888|ref|ZP_07723128.1| signal recognition particle protein [Streptococcus vestibularis F0396] gi|322516902|ref|ZP_08069799.1| signal recognition particle protein [Streptococcus vestibularis ATCC 49124] gi|311101748|gb|EFQ59951.1| signal recognition particle protein [Streptococcus vestibularis F0396] gi|322124525|gb|EFX96007.1| signal recognition particle protein [Streptococcus vestibularis ATCC 49124] Length = 520 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 107/206 (51%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + M+ D +R AAIDQLK + + Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLIKEQEARPMMIGADIYRPAAIDQLKTLGQQINVPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + A + +QA+A K D ++IDTAGRL + LM + +R +K Sbjct: 161 FDMGTETPAVEIVRNGLEQARANKNDYVLIDTAGRLQIDETLM----QELRDIKGF--AH 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P+ +L V+D+ GQ A + F+ TG+++TK+DG RGG + I P+ F Sbjct: 215 PNEILLVVDSMIGQEAANVAKEFNEQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFT 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I D+E F S+ I G D Sbjct: 275 GTGEKITDIETFHPDRMSSRILGMGD 300 >gi|225868530|ref|YP_002744478.1| signal recognition particle protein [Streptococcus equi subsp. zooepidemicus] gi|225701806|emb|CAW99232.1| signal recognition particle protein [Streptococcus equi subsp. zooepidemicus] Length = 523 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 87/306 (28%), Positives = 150/306 (49%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L++ I + L + V +E+ L+ +D+ + V + ++ + + Sbjct: 3 FESLTQRLQDVFKHIRGKKTLSEADVQEVTKEIRLALLEADVALPVVKTFIKRIRERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130 ++ Q++L V+E + +L S+ D S + P VI++VG+ G GKTT GK Sbjct: 63 HEIIDTLDPTQQILKIVNEELTGILG--SETAELDKSPKIPTVIMMVGLQGAGKTTFAGK 120 Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L+ K+ + + ++ A D +R AAIDQLK + + A + QA Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTNHSAVDIVANGLAQA 180 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + + D ++IDTAGRL + LM+ + + ++ L + P+ +L V+D+ GQ A Sbjct: 181 KENRHDYVLIDTAGRLQIDEKLMSEL-REVKALAK-----PNEILLVVDSMIGQEAANVA 234 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 F+ TG+++TK+DG RGG + I P+ F G GE I D+E F S+ Sbjct: 235 YEFNNQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMSSR 294 Query: 310 ITGCLD 315 I G D Sbjct: 295 ILGMGD 300 >gi|300777801|ref|ZP_07087659.1| signal recognition particle protein [Chryseobacterium gleum ATCC 35910] gi|300503311|gb|EFK34451.1| signal recognition particle protein [Chryseobacterium gleum ATCC 35910] Length = 453 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/278 (30%), Positives = 137/278 (49%), Gaps = 20/278 (7%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKMLMPL- 99 +E+ L+ +D+ VA+ LTKR Q VL ++ +++H L+ L Sbjct: 32 KEIRRALVDADVNYKVAKD-----LTKRVQDKALGQNVLTSLTPGQLMTKIVHDELVDLM 86 Query: 100 -SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQ 157 + S +P VIL+ G+ G GKTT GKL+ + + K +L A D +R AAIDQ Sbjct: 87 GGSQEGINLSGKPTVILIAGLQGSGKTTFSGKLANYLQTKRNKKPLLVACDVYRPAAIDQ 146 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 LK+ + E ++ + +A A A++ DV+I+DTAGRL + +M I Sbjct: 147 LKVLGGQIKVPVYTEEGSTNPSTIAENAINFAKSNGHDVVIVDTAGRLAIDEQMMNEIKS 206 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + +K P L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + Sbjct: 207 VHYFIK------PQETLFVVDSMTGQDAVNTAKAFNDALNFDGVVLTKLDGDTRGGAALT 260 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I + P+ F+ GE + L+ F + + I G D Sbjct: 261 IRSVVEKPIKFISTGEKMEALDLFYPERMADRILGMGD 298 >gi|289581472|ref|YP_003479938.1| GTP-binding signal recognition particle SRP54 G- domain protein [Natrialba magadii ATCC 43099] gi|289531025|gb|ADD05376.1| GTP-binding signal recognition particle SRP54 G- domain protein [Natrialba magadii ATCC 43099] Length = 464 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 IL+ G+ G GKTT K++ S GL+ + DTFR A DQ K A R DF Sbjct: 98 QTILLAGLQGSGKTTSSAKMAWWFSTKGLRPAIIQTDTFRPGAYDQAKEMAGRAEVDFYG 157 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 + D +A + + + DV I+DTAGR L+A I ++ V++ P Sbjct: 158 NPDNDDPVEIARKGLEAT--SEADVHIVDTAGRHALEDDLIAEIEQIEGVVE------PD 209 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 + L VLDA GQ A Q + F G G+++TK+DGTA+GGG + V + FLG Sbjct: 210 TSLLVLDAAIGQGAKEQAQQFDESIGIDGVVITKLDGTAKGGGALTAVDQTDSSIAFLGT 269 Query: 292 GEGINDLEPFVAKDFSAVITGCLDYGE 318 GE + D+E F F + + G D G+ Sbjct: 270 GEEVQDVERFEPDSFISRLLGMGDLGQ 296 >gi|23464904|ref|NP_695507.1| signal recognition particle protein [Bifidobacterium longum NCC2705] gi|23325496|gb|AAN24143.1| signal recognition particle protein [Bifidobacterium longum NCC2705] Length = 582 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 91/324 (28%), Positives = 155/324 (47%), Gaps = 36/324 (11%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F+S + +L + S +L DG E+ L+ +D+ + V + ++ + Sbjct: 36 FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGKVRERALG 95 Query: 77 KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +VS Q+V+ V+E + +L + +P N+ + P +I++ G+ G GKTT+ GK Sbjct: 96 TEVSDALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 154 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175 L + D+G +L A D R A+ QL++ +R E G Sbjct: 155 LGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVAAPGQT 214 Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 D +A ++ + A+ K D +IIDTAGRL + LM K R ++ D P+ +L Sbjct: 215 SGDPVKVARDSIELAKQKLYDTVIIDTAGRLGVDEELM----KQARDIR--DAVRPNEIL 268 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DA GQ+A++ + F TG++++K+DG ARGG + + P+ F GEG Sbjct: 269 FVIDAMIGQDAVKTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASNGEG 328 Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318 + D E F ++ I LD G+ Sbjct: 329 LKDFEVFHPDRMASRI---LDMGD 349 >gi|118579532|ref|YP_900782.1| signal recognition particle protein [Pelobacter propionicus DSM 2379] gi|118502242|gb|ABK98724.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pelobacter propionicus DSM 2379] Length = 453 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 88/284 (30%), Positives = 141/284 (49%), Gaps = 18/284 (6%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVS-ELI 92 +D ++E L ++ L+ +D+ V + VE + K +V Q+V+ V+ EL+ Sbjct: 24 EDNIKEALREVRLALLEADVNFKVVKDFVESVRAKAVGTEVLQSLSPGQQVVKIVNDELV 83 Query: 93 HKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 +M + + + + +P V +++VG+ G GKTT GKL+ + + +L D +R Sbjct: 84 A--IMGGHEDNSINLAAKPPVSLMMVGLQGAGKTTTCGKLALHLRGRKRRPLLVPADVYR 141 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 AAIDQLKI + S + A K A+ D +I+DTAGR + L Sbjct: 142 PAAIDQLKIVGKQLGVAVFDSSADQKPVDICSAAMKFAELNGFDTVILDTAGRHQIDDFL 201 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M + ++ ++ P +L V DA TGQ A+ F+ G TG+I+TKMDG A+ Sbjct: 202 MGELAEINETIR------PAEILFVADAMTGQEAVNVAAGFNDRLGITGVILTKMDGDAK 255 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 GG + I PV F+G+GE ++ LE F A + I G D Sbjct: 256 GGAALSIKAVTGKPVKFVGMGEKLDALEVFHADRLVSRILGMGD 299 >gi|295677731|ref|YP_003606255.1| signal recognition particle protein [Burkholderia sp. CCGE1002] gi|295437574|gb|ADG16744.1| signal recognition particle protein [Burkholderia sp. CCGE1002] Length = 455 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 109/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +IL+ G+ G GKTT +GKL+K + + KV+ + D +R AAI QLK ++ ADF Sbjct: 104 PAIILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 SE +A A A+ DVL++DTAGRL + +M I + LK Sbjct: 164 FPSEPNQKPVDIARAAVDWAKRHYHDVLLVDTAGRLGIDEAMMNEIAALHAELK------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F TG+++TK+DG +RGG + + PV F+ Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPVKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F ++ I G D Sbjct: 278 GVAEKLDGLEVFHPDRMASRILGMGD 303 >gi|58696771|ref|ZP_00372307.1| signal recognition particle protein [Wolbachia endosymbiont of Drosophila simulans] gi|58537035|gb|EAL60173.1| signal recognition particle protein [Wolbachia endosymbiont of Drosophila simulans] Length = 417 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/259 (32%), Positives = 137/259 (52%), Gaps = 12/259 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDVS-VQRVLYDVSELIHKMLMPLSKP 102 E+ LI +D+ + VA+K + ++ K + K VS Q ++ V + + +L Sbjct: 3 EIRIALIEADVSLEVAKKFINDIKDKVIGEKVIKSVSPAQMIIKIVQDNLVAVLGSEKSD 62 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 N P VI++VG+ G GKTT GKL+ K+ KVMLA+ D +R AA QL++ Sbjct: 63 LNLAVKP-PAVIMMVGLQGAGKTTTSGKLALKLKKQKKKVMLASLDIYRPAAQKQLEVLG 121 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 + + I + A A+ DVLI+DTAGRLH ++ +M ++ + Sbjct: 122 KQIDVQTLPVVIDEKPITITKRALAAAKNDNYDVLILDTAGRLHIDNNMM----NELKAV 177 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 K + +P V+ V DA GQ+A+ + F+ V G TG+I+T++DG ARGG + + + Sbjct: 178 KEI--ASPAEVILVADAMIGQDAVNIAKSFNEVIGVTGIILTRVDGDARGGAALSMKMIA 235 Query: 283 KIPVYFLGVGEGINDLEPF 301 P+ F+ GE ++DL+ F Sbjct: 236 DCPIKFIACGEKLSDLDDF 254 >gi|319791708|ref|YP_004153348.1| signal recognition particle protein [Variovorax paradoxus EPS] gi|315594171|gb|ADU35237.1| signal recognition particle protein [Variovorax paradoxus EPS] Length = 462 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 108/209 (51%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P VIL+ G+ G GKTT KL+K + + KV+ +GD +R AAI+QLK + Sbjct: 97 AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTKQAG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 A++ S +A A A+ DVL++DTAGRL + +LM I ++ L Sbjct: 157 AEWFPSTPDQKPLDIARAALDHAKRHYFDVLLVDTAGRLAIDEVLMTEIKQLHAALD--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA GQ+A+ + F TG+I+TK DG +RGG + + +P+ Sbjct: 214 ---PVETLFVVDAMQGQDAINTAKAFKEALPLTGIILTKTDGDSRGGAALSVRQVTGVPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G E I+ LE F A+ + I G D Sbjct: 271 KFAGTSEKIDGLEVFDAERHAGRILGMGD 299 >gi|51473373|ref|YP_067130.1| signal recognition particle protein [Rickettsia typhi str. Wilmington] gi|81826334|sp|Q68XJ4|SRP54_RICTY RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog gi|51459685|gb|AAU03648.1| signal recognition particle protein [Rickettsia typhi str. Wilmington] Length = 449 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 151/290 (52%), Gaps = 16/290 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89 I++ ++D +R+ + L+ SD+ + V + + E+ K ++V SV Q ++ + Sbjct: 21 ILTENQIDTAMRD-VRVALLESDVALPVIKGFIAEVKQKALGQEVIKSVSPGQMIIKIIH 79 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 E + +L + + +P V +L+VG+ G GKTT GKL+ + + KV+L + D Sbjct: 80 EEMINLLASSESTTKLNLNSKPPVNLLMVGLQGGGKTTASGKLALLLKNQNKKVLLVSLD 139 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 T+R AA +QL I A+ + D + G + A +A+ DV+I DTAGR+ + Sbjct: 140 TYRPAAQEQLAIIANSVNIDSLPIVQGEQPLDIVKRAISEAKIFAYDVVIYDTAGRIQID 199 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 +++M + ++L P L V+D+ TGQ+A+ F +GLI++++DG Sbjct: 200 NVMMEEALAIKKILN------PTETLLVIDSMTGQDAVVTARSFSDKLEISGLILSRIDG 253 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 +GG + + + P+ FL GE + DLE F A+ ++ I LD G+ Sbjct: 254 DTKGGAALSVKYLTQKPIKFLSCGEKLTDLEEFDAERLASRI---LDMGD 300 >gi|332877610|ref|ZP_08445354.1| signal recognition particle protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684459|gb|EGJ57312.1| signal recognition particle protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 442 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 111/211 (52%), Gaps = 7/211 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 + S P VIL+ G+ G GKTT GKL+ + + K +L A D +R AAIDQL I ++ Sbjct: 94 NLSGNPTVILMSGLQGSGKTTFSGKLANYLKTKKNKKPLLVACDVYRPAAIDQLHIVGEQ 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + ++ +A + A+ ++V+I+DTAGRL + +M I + + +K Sbjct: 154 VGVPVFSDKGNNNPVDIALKGLAYAKENHLNVVIVDTAGRLAVDEQMMNEISNIHQAIK- 212 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 PH L V+DA TGQ+A+ + F+ V G+I+TK+DG RGG I I Sbjct: 213 -----PHETLFVVDAMTGQDAVNTAKAFNDVLNFDGVILTKLDGDTRGGAAITIKSVVNK 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE ++ ++ F + I G D Sbjct: 268 PIKFVGTGEKMDAIDVFYPDRMADRILGMGD 298 >gi|124809679|ref|XP_001348651.1| signal recognition particle SRP54, putative [Plasmodium falciparum 3D7] gi|23497549|gb|AAN37090.1| signal recognition particle SRP54, putative [Plasmodium falciparum 3D7] gi|326787503|gb|AEA07718.1| signal recognition particle 54 [Plasmodium falciparum] Length = 500 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 95/311 (30%), Positives = 149/311 (47%), Gaps = 16/311 (5%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 ++ ++ + RKL + + ++E + +II + L D L+D I+S+I + + Sbjct: 5 ELGTQITNAFRKLQTSTLADDVVIEECLKEIIRALILSDINVSYLKD--IKSNIKNNIEK 62 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 I ++ K VQ+ Y V ELI K+L + +N R +VIL VG+ G GK Sbjct: 63 NI--DIYGNNKKK--LVQK--YVVEELI-KLLEGKKEGYNPVKGKR-NVILFVGLQGSGK 114 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT K + G K L DTFR+ A DQLK A + F S D +A + Sbjct: 115 TTTCTKYAHYYQKKGFKTALVCADTFRAGAFDQLKQNAAKVKIPFYGSYSEVDPVKIATD 174 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 K D++I+D++GR + L +MI+V + P ++ V+D+ GQ+ Sbjct: 175 GVNAFLKDKYDLIIVDSSGRHKQENELFE---EMIQVENSI---QPEEIIFVIDSHIGQS 228 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 Q F +I+TK+DG A+GGG + V P+ F+G GE +ND E F AK Sbjct: 229 CHDQAMAFKNSVSLGSIIITKIDGHAKGGGALSAVAATGCPITFIGTGEHVNDFEKFEAK 288 Query: 305 DFSAVITGCLD 315 F + + G D Sbjct: 289 SFVSRLLGLGD 299 >gi|291527949|emb|CBK93535.1| signal recognition particle protein [Eubacterium rectale M104/1] Length = 458 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 159/304 (52%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ ++ S +L +D V+ L+++ L+ +D+ V ++ + + + Sbjct: 3 FDSLSEKLQNVFKNLRSKGKLTEDDVKAALKEVKMALLEADVNFKVVKQFTKSVQERAIG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + K++ + + VI++VG+ G GKTT K+ Sbjct: 63 QDVMNGLNPGQMVIKIVNEEMIKLMGSETTEIAFRPGKELTVIMMVGLQGAGKTTTTAKI 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K+ G K +L A D +R AAI+QLKI ++ + + A +A A + A+ Sbjct: 123 AGKLKSKGKKSLLVACDVYRPAAIEQLKINGEKQGVEVFSMGDKNKPADIAKAAVEHAKK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +V+IIDTAGRLH + +MA ++I + + D ++L V+DA TGQ+A+ Sbjct: 183 NDFNVVIIDTAGRLHIDEDMMA---ELIEIKEATDVF--QTIL-VVDAMTGQDAVNVAGT 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F G G+++TK+DG RGG + I P+ + G+GE ++DLE F + ++ I Sbjct: 237 FDEKIGIDGVVITKLDGDTRGGAALSIRAVTGKPILYAGMGEKLSDLEQFYPERMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|223043736|ref|ZP_03613779.1| signal recognition particle protein [Staphylococcus capitis SK14] gi|222442833|gb|EEE48935.1| signal recognition particle protein [Staphylococcus capitis SK14] Length = 455 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT GKL+ M K ML AGD +R AAIDQL+ + Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAGDIYRPAAIDQLQTVGKQIDIPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + A K A+ + +D +IIDTAGRLH + LM + ++ + K Sbjct: 161 YSEGDQVQPQQIVENALKHAKEEHLDFVIIDTAGRLHIDEALMNELQEVKEISK------ 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P ++ V+DA TGQ+A+ + F +G+ +TK+DG RGG + I + P+ F+ Sbjct: 215 PDEIMLVVDAMTGQDAVNVAQSFDDQLDVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFV 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+ E ++ LE F + ++ I G D Sbjct: 275 GMSEKLDGLELFHPERMASRILGMGD 300 >gi|125623722|ref|YP_001032205.1| signal recognition particle protein [Lactococcus lactis subsp. cremoris MG1363] gi|124492530|emb|CAL97473.1| signal recognition particle protein [Lactococcus lactis subsp. cremoris MG1363] gi|300070491|gb|ADJ59891.1| signal recognition particle protein [Lactococcus lactis subsp. cremoris NZ9000] Length = 518 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 107/206 (51%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+KK+ + + ++ A D +R AAIDQLK ++ Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLAKKLKEEQNARPLMIAADVYRPAAIDQLKTLGEQLDIPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + +AQ ++ D ++IDTAGRL + LM + + I+ L + Sbjct: 161 YDEGTSEKPVNIVRNGLLKAQEERKDYVLIDTAGRLEIDDTLMNEL-QEIKALAQ----- 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P +L V+DA TGQ A + + F TG+I+TK+DG RGG + I P+ F Sbjct: 215 PTEILLVVDAMTGQVAAQVAKTFDEKLDITGVIITKLDGDTRGGAALSIREITGKPIKFT 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE + DLE F S+ I G D Sbjct: 275 GTGEKLTDLEVFYPDRMSSRILGMGD 300 >gi|325982102|ref|YP_004294504.1| signal recognition particle protein [Nitrosomonas sp. AL212] gi|325531621|gb|ADZ26342.1| signal recognition particle protein [Nitrosomonas sp. AL212] Length = 449 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 109/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT GKL+K M + KV+L + D +R AAI QL++ A++ ADF Sbjct: 100 PAVILMAGLQGAGKTTSSGKLAKWLMENKKKKVLLVSCDIYRPAAIHQLELLANQVGADF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G + A A+ +V+I+DTAGRL + +M I ++ +L+ Sbjct: 160 FPVQEGQKPGEIGAAALDYARRHHHEVMIVDTAGRLGIDEAMMQEIRELETLLR------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F TG+I+TK+DG ARGG + + P+ F Sbjct: 214 PIETLFVVDAMQGQDAVNTAKAFSDALPLTGVILTKLDGDARGGAALSVKHITGKPIKFA 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G E + LE F ++ I G D Sbjct: 274 GTAEKLTGLEAFHPDRMASRILGMGD 299 >gi|84995142|ref|XP_952293.1| signal recognition particle receptor alpha subunit [Theileria annulata strain Ankara] gi|65302454|emb|CAI74561.1| signal recognition particle receptor alpha subunit, putative [Theileria annulata] Length = 547 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 69/198 (34%), Positives = 109/198 (55%), Gaps = 15/198 (7%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 + I+ +GVNGVGK+T + K++ + +G KV++ A DTFRS A++QLK Sbjct: 346 YSIVFLGVNGVGKSTSLAKVAYLLKSSGFKVLVIACDTFRSGAVEQLKTHTRNLGLQLFE 405 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 G D + +A E K A A + DV++IDTAGR+ +N LMA + K+I V + P+ Sbjct: 406 RGYGKDPSQIAKEGLKYATANQFDVVLIDTAGRMQDNEPLMAALTKLITV------NNPN 459 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGT------TGLIMTKMDGTAR--GGGLIPIVVTHK 283 +L V +A G +A+ Q++ F+ G L++TK D G L + +T K Sbjct: 460 LILFVGEALVGNDAVDQLKKFNTAIGKGTDRSIDALLLTKFDTVDDKVGAALSMVYITGK 519 Query: 284 IPVYFLGVGEGINDLEPF 301 P+ F+G G+ +DL+P Sbjct: 520 -PILFVGNGQTYSDLQPL 536 >gi|269114992|ref|YP_003302755.1| signal recognition particle protein [Mycoplasma hominis] gi|268322617|emb|CAX37352.1| Signal recognition particle protein (fifty fourhomolog) [Mycoplasma hominis ATCC 23114] Length = 442 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 131/257 (50%), Gaps = 18/257 (7%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + V + +E+ K + + Q VL + + ++L SK + Sbjct: 38 LLEADVNLEVVKNFTKEVKAKALSSQIIGKLNQQQTVLKIFKDELTRILG--SKSIDIKT 95 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV--MLAAGDTFRSAAIDQLKIWADRT 165 ++ P I++VG+ G GKTT KLS L V +L D +R AA +QL+ A +T Sbjct: 96 NNNPTKIMMVGLQGSGKTTTAAKLSVYFKKKNLAVNPLLVGDDIYRPAAREQLQQLAKQT 155 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 DF E ++A +A +A + A+ K D++IIDTAGRL + LM + LK + Sbjct: 156 QTDFFTME-ENNAINIAQKAIELAKENKNDLVIIDTAGRLAIDENLM-------QELKDI 207 Query: 226 DPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 + P + V+DA +GQ+ + ++FH G I+TK+D ARGG + I + Sbjct: 208 KKYTHPDYIFLVVDAMSGQDVINTAKIFHQELNLDGTIITKLDSDARGGAALSITHLLNV 267 Query: 285 PVYFLGVGEGINDLEPF 301 P+ F+G GE + LE F Sbjct: 268 PIIFIGTGEKLTGLELF 284 >gi|238923877|ref|YP_002937393.1| signal recognition particle protein [Eubacterium rectale ATCC 33656] gi|238875552|gb|ACR75259.1| signal recognition particle protein [Eubacterium rectale ATCC 33656] gi|291524523|emb|CBK90110.1| signal recognition particle protein [Eubacterium rectale DSM 17629] Length = 458 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 159/304 (52%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ ++ S +L +D V+ L+++ L+ +D+ V ++ + + + Sbjct: 3 FDSLSEKLQNVFKNLRSKGKLTEDDVKAALKEVKMALLEADVNFKVVKQFTKSVQERAIG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + K++ + + VI++VG+ G GKTT K+ Sbjct: 63 QDVMNGLNPGQMVIKIVNEEMIKLMGSETTEIAFRPGKELTVIMMVGLQGAGKTTTTAKI 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K+ G K +L A D +R AAI+QLKI ++ + + A +A A + A+ Sbjct: 123 AGKLKSKGKKSLLVACDVYRPAAIEQLKINGEKQGVEVFSMGDKNKPADIAKAAVEHAKK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +V+IIDTAGRLH + +MA ++I + + D ++L V+DA TGQ+A+ Sbjct: 183 NDFNVVIIDTAGRLHIDEDMMA---ELIEIKEATDVF--QTIL-VVDAMTGQDAVNVAGT 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F G G+++TK+DG RGG + I P+ + G+GE ++DLE F + ++ I Sbjct: 237 FDEKIGIDGVVITKLDGDTRGGAALSIRAVTGKPILYAGMGEKLSDLEQFYPERMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|42520886|ref|NP_966801.1| signal recognition particle protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410626|gb|AAS14735.1| signal recognition particle protein [Wolbachia endosymbiont of Drosophila melanogaster] Length = 447 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 92/294 (31%), Positives = 153/294 (52%), Gaps = 15/294 (5%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----E 68 + LT+ S KL+ IIS + +RE + LI +D+ + VA+K + + Sbjct: 1 MFKSLTESLNSVFSKLRG--KSIISEDDFNLAMRE-IRIALIEADVSLEVAKKFINNIKD 57 Query: 69 ELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 +++ ++ K VS Q ++ V + + +L N P VI++VG+ G GKTT Sbjct: 58 KVIGEKVIKSVSPAQMIIKIVQDNLVAVLGSEKSDLNLAVKP-PAVIMMVGLQGAGKTTT 116 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 GKL+ K+ KVMLA+ D +R AA QL++ + + I + A Sbjct: 117 SGKLALKLKKQKKKVMLASLDIYRPAAQKQLEVLGKQIDVQTLPVVIDEKPITITKRAIA 176 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ DVLI+DTAGRLH ++ +M ++ +K + +P V+ V DA GQ+A+ Sbjct: 177 IAKNDNYDVLILDTAGRLHIDNNMM----NELKAVKEI--ASPAEVILVADAMIGQDAVN 230 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F+ V G TG+I+T++DG ARGG + + + P+ F+ GE ++DL+ F Sbjct: 231 IAKSFNEVIGVTGIILTRVDGDARGGAALSMKMIADCPIKFIACGEKLSDLDDF 284 >gi|308189776|ref|YP_003922707.1| signal recognition particle protein [Mycoplasma fermentans JER] gi|319776994|ref|YP_004136645.1| signal recognition particle protein [Mycoplasma fermentans M64] gi|307624518|gb|ADN68823.1| signal recognition particle protein [Mycoplasma fermentans JER] gi|318038069|gb|ADV34268.1| Signal recognition particle protein [Mycoplasma fermentans M64] Length = 453 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 8/211 (3%) Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADR 164 + RP++I++ G+ G GKTT KL+ + K ++ A D +R AA+ QL A Sbjct: 95 ITARPYIIMMAGLQGSGKTTACAKLAYYLRKKNFVTKPLVVAADIYRPAAVQQLVTLAKS 154 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 D+ A + EA K A A+K D++IIDTAGRL + LM + + ++ Sbjct: 155 IQIDYFEKGTNVSAQDIVKEALKVADAQKNDLIIIDTAGRLSIDEPLMQELWDLKKI--- 211 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P + V DA +GQ+ L E F+ TG I+TK+D ARGG + + K+ Sbjct: 212 ---ANPSEIFFVADALSGQDILNVAETFNNKLKLTGTIITKLDSDARGGAALSLTKMLKL 268 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE +++L+ F + I G D Sbjct: 269 PIRFIGTGEKVSNLDLFYPDRMADRILGMGD 299 >gi|307105722|gb|EFN53970.1| hypothetical protein CHLNCDRAFT_31879 [Chlorella variabilis] Length = 490 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/284 (27%), Positives = 137/284 (48%), Gaps = 19/284 (6%) Query: 43 DGVREELEDLLIRSDIGV--------AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94 D +E+ L+++D+ V V +++ E L K +++ ++D EL Sbjct: 29 DACLKEIATALLQADVNVRLVANLRNNVKKRVNMEQLASGLNKQKVIEKAVFD--ELCS- 85 Query: 95 MLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 ++ P + + ++++ VG+ G GKTT K + G K + DTFR+ Sbjct: 86 -MLDGGDPKKTELKKGKTNIVMFVGLQGAGKTTTCTKYAFLWKKKGFKPAMVCADTFRAG 144 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A DQLK A + F S +D A +A + + + + D++I+DT+GR L Sbjct: 145 AFDQLKQNATKAQIPFYGSYTETDPAIIAQQGVDRFKKEGRDLIIVDTSGRHKQEEALFE 204 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 +M +V ++P V+ V+D + GQ A Q + FH +I+TK+DG A+GG Sbjct: 205 ---EMRQVAAAVNPQ---HVIFVMDGSIGQAAFDQAKAFHESVDVGQVIITKLDGHAKGG 258 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317 G + V + P+ F+G GE +++ E F + F + G D+G Sbjct: 259 GALSAVAATRSPITFIGTGEHMHEFESFETQKFVGRLLGRGDWG 302 >gi|227545808|ref|ZP_03975857.1| signal recognition particle protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213924|gb|EEI81763.1| signal recognition particle protein [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 582 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 91/324 (28%), Positives = 155/324 (47%), Gaps = 36/324 (11%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F+S + +L + S +L DG E+ L+ +D+ + V + ++ + Sbjct: 36 FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGKVRERALG 95 Query: 77 KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +VS Q+V+ V+E + +L + +P N+ + P +I++ G+ G GKTT+ GK Sbjct: 96 TEVSDALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 154 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175 L + D+G +L A D R A+ QL++ +R E G Sbjct: 155 LGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVAAPGQT 214 Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 D +A ++ + A+ K D +IIDTAGRL + LM K R ++ D P+ +L Sbjct: 215 SGDPVKVARDSIELAKQKLYDTVIIDTAGRLGVDEELM----KQARDIR--DAVRPNEIL 268 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DA GQ+A++ + F TG++++K+DG ARGG + + P+ F GEG Sbjct: 269 FVIDAMIGQDAVKTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASNGEG 328 Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318 + D E F ++ I LD G+ Sbjct: 329 LKDFEVFHPDRMASRI---LDMGD 349 >gi|83319981|ref|YP_424520.1| signal recognition particle protein [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283867|gb|ABC01799.1| signal recognition particle protein [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 447 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/283 (28%), Positives = 144/283 (50%), Gaps = 18/283 (6%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93 ++ ++E L+++ L+ +D+ + ++I+ + K + + Q+++ V E + Sbjct: 26 EENIKETLKEIRLSLLEADVNIEATKEIISNVKQKALGGYIFEGANAHQQMIKIVHEELV 85 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRS 152 +L + P + + +P V+++VG+ G GKTT KL+ ++ K +L G D +R Sbjct: 86 NILGKENAPL--ELNKKPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKKVLLVGLDIYRP 143 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AI+QL +T+ V + D A EA + AQ DV+I+DTAGRL + +LM Sbjct: 144 GAIEQLIQLGQKTNTQ-VFEKGKQDPVLTAQEALEYAQENNFDVVILDTAGRLQVDQVLM 202 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + + + +P +L V+D +GQ + F+ +G+++TK+DG ARG Sbjct: 203 TELDNLKK------KTSPSEILLVVDGMSGQEIINVTNEFNNKLKLSGVVVTKLDGDARG 256 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + I K+P+ F+G GEG N L F K + + G D Sbjct: 257 GATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGMGD 299 >gi|300767270|ref|ZP_07077182.1| signal recognition particle protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180484|ref|YP_003924612.1| signal recognition particle protein [Lactobacillus plantarum subsp. plantarum ST-III] gi|300495089|gb|EFK30245.1| signal recognition particle protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045975|gb|ADN98518.1| signal recognition particle protein [Lactobacillus plantarum subsp. plantarum ST-III] Length = 484 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 89/309 (28%), Positives = 150/309 (48%), Gaps = 23/309 (7%) Query: 20 GFASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 F + +L++ +T++ IS L +RE + L+ +D+ V + V+ + + Sbjct: 2 AFEGLTERLQKAMTNLRRKGKISESDLRATMRE-IRLALLEADVNFTVVKDFVKTVRERA 60 Query: 75 YAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V Q+++ V E + K + + P N P VI++ G+ G GKTT +G Sbjct: 61 LGAKVLEGLNPAQQIVKIVDEELTKTMGEKAVPLNKS-PKIPTVIMMAGLQGAGKTTTVG 119 Query: 130 KLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD--AAALAYEAF 186 KL+ K+ ++ + ++ A D +R AAI+QL+ D ++G+D + + Sbjct: 120 KLALKLKNEQDARPLMIAADVYRPAAIEQLQQVG--RQIDVPVFQLGTDVDPVEIVRQGM 177 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 QAQ D + IDTAGRL + LM + + ++ P +L V+DA TGQNA+ Sbjct: 178 AQAQENHNDYVFIDTAGRLQIDEQLMNELANIKDLVH------PDEILLVIDAMTGQNAV 231 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 E F+ TG+++TK+DG RGG + I P+ F+G GE + DL+ F Sbjct: 232 NTAEGFNDKLDVTGVVLTKLDGDTRGGAALSIRAVTGKPIKFVGQGEKMTDLDVFHPDRM 291 Query: 307 SAVITGCLD 315 + I G D Sbjct: 292 ADRILGMGD 300 >gi|116512427|ref|YP_809643.1| signal recognition particle protein [Lactococcus lactis subsp. cremoris SK11] gi|116108081|gb|ABJ73221.1| signal recognition particle subunit FFH/SRP54 (srp54) [Lactococcus lactis subsp. cremoris SK11] Length = 518 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 107/206 (51%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+KK+ + + ++ A D +R AAIDQLK ++ Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLAKKLKEEQNARPLMIAADVYRPAAIDQLKTLGEQLDIPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + +AQ ++ D ++IDTAGRL + LM + + I+ L + Sbjct: 161 YDEGTSEKPVNIVRNGLLKAQEERKDYVLIDTAGRLEIDDTLMNEL-QEIKALAQ----- 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P +L V+DA TGQ A + + F TG+I+TK+DG RGG + I P+ F Sbjct: 215 PTEILLVVDAMTGQVAAQVAKTFDEKLDITGVIITKLDGDTRGGAALSIREITGKPIKFT 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE + DLE F S+ I G D Sbjct: 275 GTGEKLTDLEVFYPDRMSSRILGMGD 300 >gi|23502679|ref|NP_698806.1| signal recognition particle protein [Brucella suis 1330] gi|23348690|gb|AAN30721.1| signal recognition particle protein [Brucella suis 1330] Length = 523 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GK++K++++ K V++A+ DT R AA +QL+ +T D Sbjct: 100 PVVIMMVGLQGSGKTTTTGKIAKRLTERQRKRVLMASLDTRRPAAQEQLRQLGLQTGVDT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ DV+I+DTAGR H + LM + + + Sbjct: 160 LPIIAGQSPVEIARRAVQAAKLGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH +L V D+ TGQ+A+ F G TG+++T+MDG RGG + + P+ + Sbjct: 214 PHEILLVADSLTGQDAVNLARNFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GE ++ LE F K + I G D Sbjct: 274 ATGEKMDALEEFYPKRIADRILGMGD 299 >gi|329115921|ref|ZP_08244638.1| signal recognition particle protein [Streptococcus parauberis NCFD 2020] gi|326906326|gb|EGE53240.1| signal recognition particle protein [Streptococcus parauberis NCFD 2020] Length = 524 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 87/307 (28%), Positives = 154/307 (50%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L+ +I ++L D V +E+ L+ +D+ + V + ++ + + Sbjct: 3 FESLTERLQGVFKNIRGKKKLSDKDVQEVTKEIRLALLEADVALPVVKTFIKRIRERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++ Q++L V+E + +L + P +I++VG+ G GKTT GKL Sbjct: 63 HEIIDTLDPTQQILKIVNEELTAILGSETSEI-VKSPKIPTIIMMVGLQGAGKTTFAGKL 121 Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQ 188 + K+ + + ++ A D +R AAIDQLK + + ++G+D +A + + +Q Sbjct: 122 ANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVEIVTKGLEQ 179 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ + D ++IDTAGRL + LM + R +K L P+ +L V+D+ GQ A Sbjct: 180 ARENRNDYVLIDTAGRLQIDEKLMGEL----RDVKAL--AQPNEILLVIDSMIGQEAANV 233 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F+ TG+++TK+DG RGG + + P+ F G GE I D+E F S+ Sbjct: 234 ADEFNKQLEITGVVLTKIDGDTRGGAALSVREITGRPIKFTGTGEKITDIETFHPDRMSS 293 Query: 309 VITGCLD 315 I G D Sbjct: 294 RILGMGD 300 >gi|42560958|ref|NP_975409.1| Signal recognition particle M54 protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492455|emb|CAE77051.1| Signal recognition particle M54 protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320640|gb|ADK69283.1| signal recognition particle protein [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 447 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/283 (28%), Positives = 145/283 (51%), Gaps = 18/283 (6%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93 ++ ++E L+++ L+ +D+ + ++I+ + K + + Q+++ V E + Sbjct: 26 EENIKETLKEIRLSLLEADVNIEATKEIINNVKQKALGGYIFEGANAHQQMIKIVHEELV 85 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRS 152 +L + P + + +P V+++VG+ G GKTT KL+ ++ K +L G D +R Sbjct: 86 NILGKENAPL--ELNKKPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKKVLLVGLDIYRP 143 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AI+QL +T+ V + D A EA + AQ DV+I+DTAGRL + +LM Sbjct: 144 GAIEQLIQLGQKTNIQ-VFEKGKQDPILTAQEALEYAQENNFDVVILDTAGRLQVDQVLM 202 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + + + +P +L V+D +GQ + F++ +G+++TK+DG ARG Sbjct: 203 TELDNLKK------KTSPSEILLVVDGMSGQEIINVTNEFNSKLKLSGVVVTKLDGDARG 256 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + I K+P+ F+G GEG N L F K + + G D Sbjct: 257 GATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGMGD 299 >gi|17986509|ref|NP_539143.1| signal recognition particle, subunit FFH/SRP54 [Brucella melitensis bv. 1 str. 16M] gi|225853269|ref|YP_002733502.1| signal recognition particle protein [Brucella melitensis ATCC 23457] gi|256045424|ref|ZP_05448316.1| signal recognition particle protein [Brucella melitensis bv. 1 str. Rev.1] gi|256114399|ref|ZP_05455124.1| signal recognition particle protein [Brucella melitensis bv. 3 str. Ether] gi|256263243|ref|ZP_05465775.1| signal recognition particle protein [Brucella melitensis bv. 2 str. 63/9] gi|260565686|ref|ZP_05836169.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|265991853|ref|ZP_06104410.1| signal recognition particle protein [Brucella melitensis bv. 1 str. Rev.1] gi|265995692|ref|ZP_06108249.1| signal recognition particle protein [Brucella melitensis bv. 3 str. Ether] gi|17982112|gb|AAL51407.1| signal recognition particle, subunit ffh/srp54 [Brucella melitensis bv. 1 str. 16M] gi|225641634|gb|ACO01548.1| signal recognition particle protein [Brucella melitensis ATCC 23457] gi|260151059|gb|EEW86154.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|262766976|gb|EEZ12594.1| signal recognition particle protein [Brucella melitensis bv. 3 str. Ether] gi|263002809|gb|EEZ15212.1| signal recognition particle protein [Brucella melitensis bv. 1 str. Rev.1] gi|263093205|gb|EEZ17302.1| signal recognition particle protein [Brucella melitensis bv. 2 str. 63/9] gi|326409830|gb|ADZ66895.1| signal recognition particle protein [Brucella melitensis M28] gi|326539546|gb|ADZ87761.1| signal recognition particle protein [Brucella melitensis M5-90] Length = 523 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GK++K++++ K V++A+ DT R AA +QL+ +T D Sbjct: 100 PVVIMMVGLQGSGKTTTTGKIAKRLTERQRKRVLMASLDTRRPAAQEQLRQLGLQTGVDT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ DV+I+DTAGR H + LM + + + Sbjct: 160 LPIIAGQSPVEIARRAVQAAKLGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH +L V D+ TGQ+A+ F G TG+++T+MDG RGG + + P+ + Sbjct: 214 PHEILLVADSLTGQDAVNLARNFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GE ++ LE F K + I G D Sbjct: 274 ATGEKMDALEEFYPKRIADRILGMGD 299 >gi|195978137|ref|YP_002123381.1| signal recognition particle protein Ffh [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225870534|ref|YP_002746481.1| signal recognition particle protein [Streptococcus equi subsp. equi 4047] gi|195974842|gb|ACG62368.1| signal recognition particle protein Ffh [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225699938|emb|CAW93879.1| signal recognition particle protein [Streptococcus equi subsp. equi 4047] Length = 523 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 87/306 (28%), Positives = 149/306 (48%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L++ I + L + V +E+ L+ +D+ + V + ++ + + Sbjct: 3 FESLTQRLQDVFKHIRGKKTLSEADVQEVTKEIRLALLEADVALPVVKTFIKRIRERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130 ++ Q++L V+E + +L S+ D S + P VI++VG+ G GKTT GK Sbjct: 63 HEIIDTLDPTQQILKIVNEELTGILG--SETAELDKSPKIPTVIMMVGLQGAGKTTFAGK 120 Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L+ K+ + + ++ A D +R AAIDQLK + + A + QA Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTNHSAVDIVANGLAQA 180 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + + D ++IDTAGRL + LM + + ++ L + P+ +L V+D+ GQ A Sbjct: 181 KENRHDYVLIDTAGRLQIDEKLMGEL-REVKALAK-----PNEILLVVDSMIGQEAANVA 234 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 F+ TG+++TK+DG RGG + I P+ F G GE I D+E F S+ Sbjct: 235 YEFNNQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMSSR 294 Query: 310 ITGCLD 315 I G D Sbjct: 295 ILGMGD 300 >gi|15673598|ref|NP_267772.1| signal recognition particle protein [Lactococcus lactis subsp. lactis Il1403] gi|12724623|gb|AAK05714.1|AE006391_13 signal recognition particle protein Ffh [Lactococcus lactis subsp. lactis Il1403] gi|326407081|gb|ADZ64152.1| signal recognition particle subunit [Lactococcus lactis subsp. lactis CV56] Length = 518 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 106/206 (51%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+KK+ + + ++ A D +R AAIDQLK ++ Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLAKKLKEEQNARPLMIAADVYRPAAIDQLKTLGEQLEIPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + +AQ ++ D ++IDTAGRL + LM + + I+ L Sbjct: 161 YDEGTAEKPVNIVRNGLLKAQEERKDYVLIDTAGRLEIDDTLMNEL-QEIKALAE----- 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P +L V+DA TGQ A + + F TG+I+TK+DG RGG + I P+ F Sbjct: 215 PTEILLVVDAMTGQVAAQVAKTFDEKLDITGVIITKLDGDTRGGAALSIREITGKPIKFT 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE + DLE F S+ I G D Sbjct: 275 GTGEKLTDLEVFYPDRMSSRILGMGD 300 >gi|25028521|ref|NP_738575.1| putative signal recognition particle protein [Corynebacterium efficiens YS-314] gi|259507575|ref|ZP_05750475.1| signal recognition particle protein [Corynebacterium efficiens YS-314] gi|23493806|dbj|BAC18775.1| putative signal recognition particle protein [Corynebacterium efficiens YS-314] gi|259164849|gb|EEW49403.1| signal recognition particle protein [Corynebacterium efficiens YS-314] Length = 540 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 88/287 (30%), Positives = 143/287 (49%), Gaps = 26/287 (9%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ + V + + + + +VS Q+V+ V+E + ++L ++ Sbjct: 33 EIRLALLEADVSLTVVRSFISRIKERAAGAEVSQALNPAQQVIKIVNEELVQILGGETRR 92 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 + P VI++ G+ G GKTT+ GKLSK ++ G ML A D R A+ QL+I Sbjct: 93 LQLAKTP-PTVIMLAGLQGAGKTTLAGKLSKHLAAQGHTPMLVACDLQRPGAVQQLQIVG 151 Query: 163 DR-----------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 +R TS D E+G+ D A+A ++A+ + D++I+DTAGRL + Sbjct: 152 ERAGVTTFAPDPGTSIDSYEHEMGTSHGDPVAVAQAGIEEAKRTQHDIVIVDTAGRLGID 211 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM + IR D P VL V+D+ GQ+A+ E F TG+++TK+DG Sbjct: 212 ETLMT-QARNIR-----DAINPDEVLFVIDSMIGQDAVDTAEAFRDGVDFTGVVLTKLDG 265 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ARGG + I P+ F GE + D + F + ++ I G D Sbjct: 266 DARGGAALSIREVTGKPIMFASTGEKLEDFDVFHPERMASRILGMGD 312 >gi|330815473|ref|YP_004359178.1| Signal recognition particle protein [Burkholderia gladioli BSR3] gi|327367866|gb|AEA59222.1| Signal recognition particle protein [Burkholderia gladioli BSR3] Length = 455 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 75/209 (35%), Positives = 110/209 (52%), Gaps = 13/209 (6%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT +GKL+K + D KV+ + D +R AAI QLK +++ ADF Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLRDKQKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S +A A A+ DVLI+DTAGRL + +M I ++ HA Sbjct: 164 FASTPDQKPVEIARAALDWAKRHYHDVLIVDTAGRLGIDEAMMKEIAEL---------HA 214 Query: 230 ---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA GQ+A+ + F+ TG+++TK+DG +RGG + + P+ Sbjct: 215 AINPAETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHITGKPI 274 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+GV E ++ LE F + I G D Sbjct: 275 KFVGVAEKLDGLEVFHPDRMANRILGMGD 303 >gi|322688491|ref|YP_004208225.1| signal recognition particle protein [Bifidobacterium longum subsp. infantis 157F] gi|320459827|dbj|BAJ70447.1| signal recognition particle protein [Bifidobacterium longum subsp. infantis 157F] Length = 544 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 86/298 (28%), Positives = 145/298 (48%), Gaps = 32/298 (10%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKML- 96 DG E+ L+ +D+ + V + ++ + +VS Q+V+ V+E + +L Sbjct: 24 DGTIREIRRALLDADVALDVVRSFTGKVRERALGTEVSDALNPAQQVVKIVNEELTDVLG 83 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 + +P N+ + P +I++ G+ G GKTT+ GKL + D+G +L A D R A+ Sbjct: 84 QGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGKLGYWLKDSGHTPLLVAADLQRPNAVT 142 Query: 157 QLKIWADRTSADFVCSEIG----------------SDAAALAYEAFKQAQAKKVDVLIID 200 QL++ +R E G D +A ++ + A+ K D +IID Sbjct: 143 QLQVVGERAGVPVYAPEKGIQSDGGEAVAAPGQTSGDPVKVARDSIELAKQKLYDTVIID 202 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL + LM K R ++ D P+ +L V+DA GQ+A++ + F TG Sbjct: 203 TAGRLGVDEELM----KQARDIR--DAVRPNEILFVIDAMIGQDAVKTAKAFDEGVDFTG 256 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 ++++K+DG ARGG + + P+ F GEG+ D E F ++ I LD G+ Sbjct: 257 VVLSKLDGDARGGAALSVASVTGKPILFASNGEGLKDFEVFHPDRMASRI---LDMGD 311 >gi|302815721|ref|XP_002989541.1| hypothetical protein SELMODRAFT_129975 [Selaginella moellendorffii] gi|300142719|gb|EFJ09417.1| hypothetical protein SELMODRAFT_129975 [Selaginella moellendorffii] Length = 467 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/276 (29%), Positives = 129/276 (46%), Gaps = 18/276 (6%) Query: 47 EELEDLLIRSDIGVAVAQ-------KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99 E+ L+++D+ + Q K VE+L + + + V ++ +H ML Sbjct: 33 NEITHALLQADVQFKLVQALSSNVRKSVEKLAAGHDKRHIIQKAVFHE----LHAML-DA 87 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 KP R + +++VG+ G GKTT K + G L DTFR+ A DQLK Sbjct: 88 GKPSFTPTKGRTNAVMLVGLQGCGKTTTCTKYALHYRKKGFNPALVCADTFRAGAFDQLK 147 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 A + F S +D +A E ++ K D++I+DT+GR + L + ++ Sbjct: 148 QNATKVKIPFYGSYTETDPVVIAQEGVRKFADTKHDLIILDTSGRHKQENALFEEMRQLA 207 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 P ++ V+D++ GQ A Q F A +I+TK+DG A+GGG + V Sbjct: 208 AATN------PDLIIFVMDSSIGQAANDQALAFRESAKVGAVIITKIDGHAKGGGALSAV 261 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 K P+ FLG GE +D E F +K F + + G D Sbjct: 262 AATKSPIIFLGTGEKADDFETFESKAFVSRLLGMGD 297 >gi|284992394|ref|YP_003410948.1| signal recognition particle protein [Geodermatophilus obscurus DSM 43160] gi|284065639|gb|ADB76577.1| signal recognition particle protein [Geodermatophilus obscurus DSM 43160] Length = 528 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/281 (28%), Positives = 140/281 (49%), Gaps = 15/281 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + + + + +VS Q+V+ V+E + ++L Sbjct: 28 DATAREIRIALLEADVALPVVRTFIAAVKERARGAEVSQALNPAQQVIKIVNEELVEILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + P VI++ G+ G GKTT+ GKL + + G +L A D R A++Q Sbjct: 88 GETRRLRY-AKQSPTVIMLAGLQGAGKTTLAGKLGRWLKAQGHTPLLVAADLQRPNAVNQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L I A + D E G+ D +A ++ + A+ DV+++DTAGRL ++ LMA Sbjct: 147 LSIVAGQAGVDVYAPEPGNGVGDPIRVAADSIEHARRTMHDVVVVDTAGRLGIDAELMAQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + V++ P L V+DA GQ+A+ E F G +G+++TK+DG ARGG Sbjct: 207 AAGIRDVVQ------PDETLFVVDAMIGQDAVTTAEAFRDGVGFSGVVLTKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ F GE + D + F + ++ I G D Sbjct: 261 ALSVRYVTGQPIMFASTGEKLTDFDVFHPERMASRILGMGD 301 >gi|319649591|ref|ZP_08003747.1| signal recognition particle [Bacillus sp. 2_A_57_CT2] gi|317398753|gb|EFV79435.1| signal recognition particle [Bacillus sp. 2_A_57_CT2] Length = 450 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/210 (34%), Positives = 112/210 (53%), Gaps = 8/210 (3%) Query: 108 SHRPH-VILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRT 165 S+RP VI++VG+ G GKTT GKL+ + ML A D +R AAI QL+ + Sbjct: 97 SNRPPTVIMMVGLQGAGKTTTTGKLANLLRKKYNRNPMLVAADIYRPAAIKQLETLGKQL 156 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + +A +A +A+ D ++IDTAGRLH + LM + K I+ L Sbjct: 157 NMPVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHVDEALMDEL-KQIKELSN- 214 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P + V+DA TGQ+A+ + F+ + G TG+++TK+DG RGG + I P Sbjct: 215 ----PDEIFLVVDAMTGQDAVNVAQSFNDLLGLTGVVLTKLDGDTRGGAALSIRSVTNTP 270 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F+G+GE ++ LE F + ++ I G D Sbjct: 271 IKFVGLGEKLDALEAFHPERMASRILGMGD 300 >gi|313901233|ref|ZP_07834721.1| signal recognition particle protein [Clostridium sp. HGF2] gi|312954191|gb|EFR35871.1| signal recognition particle protein [Clostridium sp. HGF2] Length = 470 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 89/302 (29%), Positives = 149/302 (49%), Gaps = 22/302 (7%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +A ESLS +L K F + + K K +S + ++D +RE + L+ +D+ V + Sbjct: 1 MAFESLS--ERLGKAFKNITGKGK------LSEKNMNDMLRE-VRMSLLEADVNYGVVKD 51 Query: 66 IVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + + + +V Q V+ V + I +L P N+ S +++VG+ Sbjct: 52 FIARVKEQALGTEVMTSLNPGQMVVKIVHDEIVALLGSEDAPVNYK-SSGITTVMMVGLQ 110 Query: 121 GVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 G GKTT K++ M K +L A D R AAI+QLK + + + + A Sbjct: 111 GTGKTTASAKIANVMKKKQSRKPLLVACDVIRPAAIEQLKTLGESIGVEVFSLGVETKAL 170 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A ++ A+ D ++ DTAGRLH + LM + + + P +L +DA Sbjct: 171 ETAKQSMDYAKENGYDTVLFDTAGRLHIDEELMQELSDIKAFVH------PDDILLTVDA 224 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQ+ + FH TGL++TK+DG +RGGG++ + ++PV F+G+GE I+DL+ Sbjct: 225 MTGQDIVNVAGSFHEQLEVTGLVLTKLDGDSRGGGILSVRSITQVPVKFVGLGEKIDDLD 284 Query: 300 PF 301 F Sbjct: 285 VF 286 >gi|239617834|ref|YP_002941156.1| signal recognition particle protein [Kosmotoga olearia TBF 19.5.1] gi|239506665|gb|ACR80152.1| signal recognition particle protein [Kosmotoga olearia TBF 19.5.1] Length = 438 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 130/255 (50%), Gaps = 12/255 (4%) Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 +V +K + E + K + D +++ D ELI K+L K + S P I++VG+ Sbjct: 54 SVQEKALGEEVLKSFTPDQQFIKIVRD--ELI-KVLG--EKKVGLNLSGSPAKIMLVGLQ 108 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT KL+ + G +L A D +R AA+DQL I + V + D Sbjct: 109 GSGKTTTSAKLALMLKKEGKHPLLVAADVYRPAAVDQL-IQLGKQIEVPVYTGDRKDPLK 167 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + EA +A DV+I DTAGRLH + +M + ++ ++K P +L V+DA Sbjct: 168 IVQEALDEAVKNVHDVIIFDTAGRLHVDEKMMEEVRRIAEIVK------PDEILMVIDAM 221 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQ+A+ + F+ TG ++TK+DG ARGG ++ + PV F+G+ E ++ LE Sbjct: 222 TGQDAVNSAKKFNDELELTGFVVTKIDGDARGGVILSVRHVTGKPVKFVGISEKMDGLEY 281 Query: 301 FVAKDFSAVITGCLD 315 F + I G D Sbjct: 282 FYPDRIAGRILGMGD 296 >gi|62290689|ref|YP_222482.1| Ffh, signal recognition particle protein [Brucella abortus bv. 1 str. 9-941] gi|82700604|ref|YP_415178.1| ATP/GTP-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189024903|ref|YP_001935671.1| Ffh, signal recognition particle protein [Brucella abortus S19] gi|237816190|ref|ZP_04595185.1| signal recognition particle protein [Brucella abortus str. 2308 A] gi|254694470|ref|ZP_05156298.1| Ffh, signal recognition particle protein [Brucella abortus bv. 3 str. Tulya] gi|254698130|ref|ZP_05159958.1| Ffh, signal recognition particle protein [Brucella abortus bv. 2 str. 86/8/59] gi|254731014|ref|ZP_05189592.1| Ffh, signal recognition particle protein [Brucella abortus bv. 4 str. 292] gi|256258233|ref|ZP_05463769.1| Ffh, signal recognition particle protein [Brucella abortus bv. 9 str. C68] gi|260547073|ref|ZP_05822811.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260758737|ref|ZP_05871085.1| signal recognition particle protein [Brucella abortus bv. 4 str. 292] gi|260762571|ref|ZP_05874908.1| signal recognition particle protein [Brucella abortus bv. 2 str. 86/8/59] gi|260884536|ref|ZP_05896150.1| signal recognition particle protein [Brucella abortus bv. 9 str. C68] gi|261214786|ref|ZP_05929067.1| signal recognition particle protein [Brucella abortus bv. 3 str. Tulya] gi|297249082|ref|ZP_06932790.1| signal recognition particle protein [Brucella abortus bv. 5 str. B3196] gi|62196821|gb|AAX75121.1| Ffh, signal recognition particle protein [Brucella abortus bv. 1 str. 9-941] gi|82616705|emb|CAJ11790.1| Disease resistance protein:GTP-binding signal recognition particle (SRP54) G-domain:ATP/GTP-binding site motif A (P-loop):AAA [Brucella melitensis biovar Abortus 2308] gi|189020475|gb|ACD73197.1| Ffh, signal recognition particle protein [Brucella abortus S19] gi|237788652|gb|EEP62865.1| signal recognition particle protein [Brucella abortus str. 2308 A] gi|260095438|gb|EEW79316.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260669055|gb|EEX55995.1| signal recognition particle protein [Brucella abortus bv. 4 str. 292] gi|260672997|gb|EEX59818.1| signal recognition particle protein [Brucella abortus bv. 2 str. 86/8/59] gi|260874064|gb|EEX81133.1| signal recognition particle protein [Brucella abortus bv. 9 str. C68] gi|260916393|gb|EEX83254.1| signal recognition particle protein [Brucella abortus bv. 3 str. Tulya] gi|297174215|gb|EFH33572.1| signal recognition particle protein [Brucella abortus bv. 5 str. B3196] Length = 523 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GK++K++++ K V++A+ DT R AA +QL+ +T D Sbjct: 100 PVVIMMVGLQGSGKTTTTGKIAKRLTERQRKRVLMASLDTRRPAAQEQLRQLGLQTGVDT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ DV+I+DTAGR H + LM + + + Sbjct: 160 LPIIAGQSPVEIARRAVQAAKLGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH +L V D+ TGQ+A+ F G TG+++T+MDG RGG + + P+ + Sbjct: 214 PHEILLVADSLTGQDAVNLARNFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GE ++ LE F K + I G D Sbjct: 274 ATGEKMDALEEFYPKRIADRILGMGD 299 >gi|134294678|ref|YP_001118413.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia vietnamiensis G4] gi|134137835|gb|ABO53578.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia vietnamiensis G4] Length = 455 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 110/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT +GKL+K + + KV+ + D +R AAI QLK +++ ADF Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIMQLKTVSEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S +A A A+ DVLI+DTAGRL + +M I + VLK Sbjct: 164 FPSTPDQKPVDIALAAVDWAKRHYHDVLIVDTAGRLGIDEAMMQEIAALHGVLK------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG +RGG + + P+ F+ Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F + I G D Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303 >gi|222478931|ref|YP_002565168.1| GTP-binding signal recognition particle SRP54 G- domain protein [Halorubrum lacusprofundi ATCC 49239] gi|254772972|sp|B9LT33|SRP54_HALLT RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|222451833|gb|ACM56098.1| GTP-binding signal recognition particle SRP54 G- domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 464 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 86/278 (30%), Positives = 129/278 (46%), Gaps = 28/278 (10%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTK---------RYAKDVSVQRVLYDVSELI-HKMLM 97 E++ L+ +D+ V++ ++ + + T+ AKD ++ V ++ EL+ + Sbjct: 34 EIQRSLLSADVDVSLVMELSDSIKTRALEEEPPGGTTAKDHVLKIVYEEMVELVGDSTEL 93 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 PL IL+ G+ G GKTT K++ S GL+ + DTFR A DQ Sbjct: 94 PLEN----------QTILLAGLQGSGKTTSAAKMAWWFSKKGLRPAVIQTDTFRPGAYDQ 143 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 K +R DF D A+A E + DV I+DTAGR L+A I + Sbjct: 144 AKQMCERAEVDFYGDPDNDDPVAIAREGLEAT--ADADVHIVDTAGRHALEDDLIAEIEE 201 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + R + P L VLDA GQ A Q F G G+++TK+DGTA+GGG + Sbjct: 202 IERAVD------PDRSLLVLDAAIGQGAKEQARQFEKSIGIEGVMITKLDGTAKGGGALT 255 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 V + FLG GE + D+E F F + + G D Sbjct: 256 AVNETDSSIAFLGTGETVQDIERFEPSGFISRLLGMGD 293 >gi|153952174|ref|YP_001398346.1| signal recognition particle protein [Campylobacter jejuni subsp. doylei 269.97] gi|152939620|gb|ABS44361.1| signal recognition particle protein [Campylobacter jejuni subsp. doylei 269.97] Length = 445 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 85/271 (31%), Positives = 140/271 (51%), Gaps = 15/271 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLT--KRYAKD--VSVQRVLYDVSELIHKMLMPLSKP 102 E L+ L+++D V K+ +ELLT + AK + ++ L + + +L K Sbjct: 30 ETLKKALLKAD----VHHKVTKELLTLIEEDAKQNGIGQKQFLNAIKINLENILSVNGKN 85 Query: 103 FNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 ++ F+ +P V+L+ G+ G GKTT KL+ + KV++AA D R AA++QL+ Sbjct: 86 QSFVFASKPPTVVLMTGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQL 145 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 + + E D +A EA K+A++ VDVL++DTAGRL + LM + + V Sbjct: 146 CEANEIELFFIENEKDPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMNELKAVKDV 205 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 L P + V DA +GQ+ ++ F+ +G+I++K D +GG + I Sbjct: 206 LN------PDEIFYVADAMSGQDGVKTAASFNEALNISGVILSKFDADTKGGVALGIAKQ 259 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 IP+ F+GVGE + DLE F+ + I G Sbjct: 260 IGIPLRFIGVGEKVADLEVFIPDRIVSRIMG 290 >gi|46190760|ref|ZP_00206561.1| COG0541: Signal recognition particle GTPase [Bifidobacterium longum DJO10A] gi|189439913|ref|YP_001954994.1| signal recognition particle GTPase [Bifidobacterium longum DJO10A] gi|239622495|ref|ZP_04665526.1| signal recognition particle protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133329|ref|YP_004000668.1| ffh [Bifidobacterium longum subsp. longum BBMN68] gi|317482005|ref|ZP_07941030.1| signal recognition particle protein [Bifidobacterium sp. 12_1_47BFAA] gi|322690501|ref|YP_004220071.1| signal recognition particle protein [Bifidobacterium longum subsp. longum JCM 1217] gi|189428348|gb|ACD98496.1| Signal recognition particle GTPase [Bifidobacterium longum DJO10A] gi|239514492|gb|EEQ54359.1| signal recognition particle protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311772547|gb|ADQ02035.1| FFh [Bifidobacterium longum subsp. longum BBMN68] gi|316916572|gb|EFV37969.1| signal recognition particle protein [Bifidobacterium sp. 12_1_47BFAA] gi|320455357|dbj|BAJ65979.1| signal recognition particle protein [Bifidobacterium longum subsp. longum JCM 1217] Length = 544 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 86/298 (28%), Positives = 145/298 (48%), Gaps = 32/298 (10%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKML- 96 DG E+ L+ +D+ + V + ++ + +VS Q+V+ V+E + +L Sbjct: 24 DGTIREIRRALLDADVALDVVRSFTGKVRERALGTEVSDALNPAQQVVKIVNEELTDVLG 83 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 + +P N+ + P +I++ G+ G GKTT+ GKL + D+G +L A D R A+ Sbjct: 84 QGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGKLGYWLKDSGHTPLLVAADLQRPNAVT 142 Query: 157 QLKIWADRTSADFVCSEIG----------------SDAAALAYEAFKQAQAKKVDVLIID 200 QL++ +R E G D +A ++ + A+ K D +IID Sbjct: 143 QLQVVGERAGVPVYAPEKGVQSDGGEAVAAPGQTSGDPVKVARDSIELAKQKLYDTVIID 202 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL + LM K R ++ D P+ +L V+DA GQ+A++ + F TG Sbjct: 203 TAGRLGVDEELM----KQARDIR--DAVRPNEILFVIDAMIGQDAVKTAKAFDEGVDFTG 256 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 ++++K+DG ARGG + + P+ F GEG+ D E F ++ I LD G+ Sbjct: 257 VVLSKLDGDARGGAALSVASVTGKPILFASNGEGLKDFEVFHPDRMASRI---LDMGD 311 >gi|256160521|ref|ZP_05458210.1| signal recognition particle protein [Brucella ceti M490/95/1] gi|256255727|ref|ZP_05461263.1| signal recognition particle protein [Brucella ceti B1/94] gi|261222941|ref|ZP_05937222.1| signal recognition particle protein [Brucella ceti B1/94] gi|265998900|ref|ZP_06111457.1| signal recognition particle protein [Brucella ceti M490/95/1] gi|260921525|gb|EEX88178.1| signal recognition particle protein [Brucella ceti B1/94] gi|262553589|gb|EEZ09358.1| signal recognition particle protein [Brucella ceti M490/95/1] Length = 523 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GK++K++++ K V++A+ DT R AA +QL+ +T D Sbjct: 100 PVVIMMVGLQGSGKTTATGKIAKRLTERQRKRVLMASLDTRRPAAQEQLRQLGLQTGVDT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ DV+I+DTAGR H + LM + + + Sbjct: 160 LPIIAGQSPVEIARRAVQAAKLGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH +L V D+ TGQ+A+ F G TG+++T+MDG RGG + + P+ + Sbjct: 214 PHEILLVADSLTGQDAVNLARNFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GE ++ LE F K + I G D Sbjct: 274 ATGEKMDALEEFYPKRIADRILGMGD 299 >gi|254719813|ref|ZP_05181624.1| signal recognition particle protein [Brucella sp. 83/13] gi|265984832|ref|ZP_06097567.1| signal recognition particle protein [Brucella sp. 83/13] gi|306839510|ref|ZP_07472318.1| signal recognition particle protein [Brucella sp. NF 2653] gi|306841605|ref|ZP_07474302.1| signal recognition particle protein [Brucella sp. BO2] gi|306844807|ref|ZP_07477392.1| signal recognition particle protein [Brucella sp. BO1] gi|264663424|gb|EEZ33685.1| signal recognition particle protein [Brucella sp. 83/13] gi|306274979|gb|EFM56749.1| signal recognition particle protein [Brucella sp. BO1] gi|306288351|gb|EFM59714.1| signal recognition particle protein [Brucella sp. BO2] gi|306405455|gb|EFM61726.1| signal recognition particle protein [Brucella sp. NF 2653] Length = 523 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GK++K++++ K V++A+ DT R AA +QL+ +T D Sbjct: 100 PVVIMMVGLQGSGKTTTTGKIAKRLTERQRKRVLMASLDTRRPAAQEQLRQLGLQTGVDT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ DV+I+DTAGR H + LM + + + Sbjct: 160 LPIIAGQSPVEIARRAVQAAKLGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH +L V D+ TGQ+A+ F G TG+++T+MDG RGG + + P+ + Sbjct: 214 PHEILLVADSLTGQDAVNLARNFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GE ++ LE F K + I G D Sbjct: 274 ATGEKMDALEEFYPKRIADRILGMGD 299 >gi|148560502|ref|YP_001259663.1| signal recognition particle protein [Brucella ovis ATCC 25840] gi|161619746|ref|YP_001593633.1| signal recognition particle protein [Brucella canis ATCC 23365] gi|163845404|ref|YP_001623059.1| signal recognition particle protein [Brucella suis ATCC 23445] gi|225628377|ref|ZP_03786411.1| signal recognition particle protein [Brucella ceti str. Cudo] gi|254703590|ref|ZP_05165418.1| signal recognition particle protein [Brucella suis bv. 3 str. 686] gi|254708323|ref|ZP_05170151.1| signal recognition particle protein [Brucella pinnipedialis M163/99/10] gi|254708825|ref|ZP_05170636.1| signal recognition particle protein [Brucella pinnipedialis B2/94] gi|254714665|ref|ZP_05176476.1| signal recognition particle protein [Brucella ceti M644/93/1] gi|254717563|ref|ZP_05179374.1| signal recognition particle protein [Brucella ceti M13/05/1] gi|256030351|ref|ZP_05443965.1| signal recognition particle protein [Brucella pinnipedialis M292/94/1] gi|256061847|ref|ZP_05451982.1| signal recognition particle protein [Brucella neotomae 5K33] gi|256370230|ref|YP_003107741.1| signal recognition particle protein [Brucella microti CCM 4915] gi|260168024|ref|ZP_05754835.1| signal recognition particle protein [Brucella sp. F5/99] gi|260568896|ref|ZP_05839364.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|261219397|ref|ZP_05933678.1| signal recognition particle protein [Brucella ceti M13/05/1] gi|261315822|ref|ZP_05955019.1| signal recognition particle protein [Brucella pinnipedialis M163/99/10] gi|261316318|ref|ZP_05955515.1| signal recognition particle protein [Brucella pinnipedialis B2/94] gi|261322459|ref|ZP_05961656.1| signal recognition particle protein [Brucella ceti M644/93/1] gi|261325854|ref|ZP_05965051.1| signal recognition particle protein [Brucella neotomae 5K33] gi|261754225|ref|ZP_05997934.1| signal recognition particle protein [Brucella suis bv. 3 str. 686] gi|261757471|ref|ZP_06001180.1| signal recognition particle protein [Brucella sp. F5/99] gi|265987387|ref|ZP_06099944.1| signal recognition particle protein [Brucella pinnipedialis M292/94/1] gi|294851065|ref|ZP_06791741.1| signal recognition particle protein [Brucella sp. NVSL 07-0026] gi|148371759|gb|ABQ61738.1| signal recognition particle protein [Brucella ovis ATCC 25840] gi|161336557|gb|ABX62862.1| signal recognition particle protein [Brucella canis ATCC 23365] gi|163676127|gb|ABY40237.1| signal recognition particle protein [Brucella suis ATCC 23445] gi|225616223|gb|EEH13271.1| signal recognition particle protein [Brucella ceti str. Cudo] gi|256000393|gb|ACU48792.1| signal recognition particle protein [Brucella microti CCM 4915] gi|260154280|gb|EEW89362.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|260924486|gb|EEX91054.1| signal recognition particle protein [Brucella ceti M13/05/1] gi|261295149|gb|EEX98645.1| signal recognition particle protein [Brucella ceti M644/93/1] gi|261295541|gb|EEX99037.1| signal recognition particle protein [Brucella pinnipedialis B2/94] gi|261301834|gb|EEY05331.1| signal recognition particle protein [Brucella neotomae 5K33] gi|261304848|gb|EEY08345.1| signal recognition particle protein [Brucella pinnipedialis M163/99/10] gi|261737455|gb|EEY25451.1| signal recognition particle protein [Brucella sp. F5/99] gi|261743978|gb|EEY31904.1| signal recognition particle protein [Brucella suis bv. 3 str. 686] gi|264659584|gb|EEZ29845.1| signal recognition particle protein [Brucella pinnipedialis M292/94/1] gi|294821708|gb|EFG38704.1| signal recognition particle protein [Brucella sp. NVSL 07-0026] Length = 523 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GK++K++++ K V++A+ DT R AA +QL+ +T D Sbjct: 100 PVVIMMVGLQGSGKTTTTGKIAKRLTERQRKRVLMASLDTRRPAAQEQLRQLGLQTGVDT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ DV+I+DTAGR H + LM + + + Sbjct: 160 LPIIAGQSPVEIARRAVQAAKLGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH +L V D+ TGQ+A+ F G TG+++T+MDG RGG + + P+ + Sbjct: 214 PHEILLVADSLTGQDAVNLARNFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GE ++ LE F K + I G D Sbjct: 274 ATGEKMDALEEFYPKRIADRILGMGD 299 >gi|150025532|ref|YP_001296358.1| Signal recognition particle protein [Flavobacterium psychrophilum JIP02/86] gi|149772073|emb|CAL43549.1| Signal recognition particle protein [Flavobacterium psychrophilum JIP02/86] Length = 449 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 112/211 (53%), Gaps = 7/211 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 + S P VIL+ G+ G GKTT GKL+ + + K +L A D +R AAI+QL + + Sbjct: 94 NLSGTPTVILMSGLQGSGKTTFSGKLANFLKTKKNKKPLLVACDIYRPAAINQLHVVGGQ 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + + +A A K A+A +V+I+DTAGRL + +MA I ++ + ++ Sbjct: 154 IGVEVYSEPENKNPVEIAQNAIKHAKANGFNVVIVDTAGRLAVDEEMMAEISRVHKAIQ- 212 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P L V+DA TGQ+A+ + F+ + G+I+TK+DG RGG I I Sbjct: 213 -----PQETLFVVDAMTGQDAVNTAKAFNDILNFDGVILTKLDGDTRGGAAISIKSVVNK 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE ++ ++ F + + I G D Sbjct: 268 PIKFVGTGEKMDAIDVFYPERMAERILGMGD 298 >gi|296453537|ref|YP_003660680.1| signal recognition particle protein [Bifidobacterium longum subsp. longum JDM301] gi|296182968|gb|ADG99849.1| signal recognition particle protein [Bifidobacterium longum subsp. longum JDM301] Length = 603 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 91/324 (28%), Positives = 155/324 (47%), Gaps = 36/324 (11%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F+S + +L + S +L DG E+ L+ +D+ + V + ++ + Sbjct: 57 FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGKVRERALG 116 Query: 77 KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +VS Q+V+ V+E + +L + +P N+ + P +I++ G+ G GKTT+ GK Sbjct: 117 TEVSDALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 175 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175 L + D+G +L A D R A+ QL++ +R E G Sbjct: 176 LGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVAAPGQT 235 Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 D +A ++ + A+ K D +IIDTAGRL + LM K R ++ D P+ +L Sbjct: 236 SGDPVKVARDSIELAKQKLYDTVIIDTAGRLGVDEELM----KQARDIR--DAVHPNEIL 289 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DA GQ+A++ + F TG++++K+DG ARGG + + P+ F GEG Sbjct: 290 FVIDAMIGQDAVKTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASNGEG 349 Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318 + D E F ++ I LD G+ Sbjct: 350 LKDFEVFHPDRMASRI---LDMGD 370 >gi|163786134|ref|ZP_02180582.1| signal recognition particle protein [Flavobacteriales bacterium ALC-1] gi|159877994|gb|EDP72050.1| signal recognition particle protein [Flavobacteriales bacterium ALC-1] Length = 443 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 109/211 (51%), Gaps = 7/211 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 + S P +IL+ G+ G GKTT GKL+ + S K +L A D +R AAIDQL + D+ Sbjct: 94 NLSGNPSIILMSGLQGSGKTTFSGKLANYLKSKKTKKPLLVACDVYRPAAIDQLHVVGDQ 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + +D A++ A+A +V+IIDTAGRL + +M I + + ++ Sbjct: 154 IGVEVFSDRGNNDPVAISQAGIAHAKANGHNVVIIDTAGRLAVDEAMMTEISNIHKAIQ- 212 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P L V+D+ TGQ+A+ + F+ + G+I+TK+DG RGG I I Sbjct: 213 -----PQETLFVVDSMTGQDAVNTAKAFNDILNFDGVILTKLDGDTRGGAAISIKSVVNK 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + ++ F + I G D Sbjct: 268 PIKFIGTGEKMEAIDVFYPSRMADRILGMGD 298 >gi|239636284|ref|ZP_04677286.1| signal recognition particle protein [Staphylococcus warneri L37603] gi|239597639|gb|EEQ80134.1| signal recognition particle protein [Staphylococcus warneri L37603] gi|330685685|gb|EGG97326.1| signal recognition particle protein [Staphylococcus epidermidis VCU121] Length = 455 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT GKL+ M K ML AGD +R AAIDQL+ + Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAGDIYRPAAIDQLQTVGKQLDVPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + A A+ + +D +IIDTAGRLH + LM + ++ + K Sbjct: 161 YSEGDQVKPQQIVQNALAHAKEEHLDFVIIDTAGRLHIDEALMNELQEVKEIAK------ 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P ++ V+DA TGQ+A+ + F TG+ +TK+DG RGG + I + P+ F+ Sbjct: 215 PDEIMLVVDAMTGQDAVNVAQSFDEQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFV 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+ E ++ LE F + ++ I G D Sbjct: 275 GMSEKLDGLELFHPERMASRILGMGD 300 >gi|239624000|ref|ZP_04667031.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522031|gb|EEQ61897.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 458 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 89/304 (29%), Positives = 157/304 (51%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ ++ S RL + V+ L+++ L+ +D+ V ++ + +L + Sbjct: 3 FESLSDKLQNVFKNLRSKGRLTEADVKAALKEVKMALLEADVSFRVVKQFISDLQKRAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + K++ + + +I++ G+ G GKTT K+ Sbjct: 63 EDVFGSLTPGQTVVKIVTEELVKLMGSETTEIALKPGNEITIIMMAGLQGAGKTTTTAKI 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K+ G K +LAA D +R AAI QL++ ++ + +A A + A Sbjct: 123 AAKLKAKGRKPLLAACDVYRPAAIKQLQVNGEKVGIPVFSMGDKNKPVDIAKAAVEHAAK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 ++V+I+DTAGRLH + +M ++I + +D H ++L V+DA TGQ+A+ Sbjct: 183 NGMNVVILDTAGRLHIDEDMME---ELIEIKSNVDVH--QTIL-VVDAMTGQDAVNVSGS 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G G+I+TK+DG RGG + I P+ ++G+GE ++DLE F ++ I Sbjct: 237 FNDKVGIDGVILTKLDGDTRGGAALSIRAVTGKPILYVGMGEKLSDLEQFYPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|56416940|ref|YP_154014.1| signal recognition particle protein [Anaplasma marginale str. St. Maries] gi|222475306|ref|YP_002563723.1| signal recognition particle protein (ffh) [Anaplasma marginale str. Florida] gi|254995122|ref|ZP_05277312.1| signal recognition particle protein (ffh) [Anaplasma marginale str. Mississippi] gi|255004414|ref|ZP_05279215.1| signal recognition particle protein (ffh) [Anaplasma marginale str. Virginia] gi|56388172|gb|AAV86759.1| signal recognition particle protein [Anaplasma marginale str. St. Maries] gi|222419444|gb|ACM49467.1| signal recognition particle protein (ffh) [Anaplasma marginale str. Florida] Length = 451 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 92/290 (31%), Positives = 156/290 (53%), Gaps = 15/290 (5%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 L KG AS KL G IS + D V E++ L+ +D+ + V ++ + ++ +K Sbjct: 5 LAKGIASAVQKL--GGRREISDKDFD-LVLEDVTQALLDADVNLMVVEQFIGDVKSKIVG 61 Query: 77 KDVSVQRVLYD--VSELIHKMLMPL--SKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKL 131 +V V+ VL + + +L+ + L+ + ++ D S + P I++VG+ GVGKTT K+ Sbjct: 62 GEV-VKGVLPEQMIIKLMEECLIEVLGNEKSELDLSGKAPVAIMMVGLQGVGKTTNTVKV 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K+ + KV++A+ D +R AA +QL + A D + G +A A K+A+ Sbjct: 121 AFKLKKSEKKVLVASLDVYRPAAQEQLGVLAQGVGVDSLPIVEGELPLDIAKRAMKEAKR 180 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 DV+I+DTAGRLH + + IG++ V K + +P+ + V+D GQ+A+ V Sbjct: 181 GGYDVVIVDTAGRLHIDQEM---IGELQLVKKEV---SPNETILVVDCMMGQDAVEVVRG 234 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 FH TG I T+ DG +RGG ++ + + P+ F+ GE DL+ F Sbjct: 235 FHDKLNLTGTIFTRADGDSRGGAILSMKMVSGCPIKFMSTGEKPEDLDDF 284 >gi|78224068|ref|YP_385815.1| signal recognition particle subunit FFH/SRP54 (srp54) [Geobacter metallireducens GS-15] gi|78195323|gb|ABB33090.1| signal recognition particle subunit FFH/SRP54 (srp54) [Geobacter metallireducens GS-15] Length = 452 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 83/283 (29%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93 ++ ++E L ++ L+ +D+ V + VE++ + V Q+V+ V E + Sbjct: 24 EENIKEALREVRLVLLEADVNFKVVKDFVEKVRERAVGTQVLQSLSPGQQVIKIVQEELV 83 Query: 94 KMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 LM + + D + +P V +++VG+ G GKTT GKL++ + + +L D +R Sbjct: 84 A-LMGGGEDNSLDLAAKPPVALMMVGLQGSGKTTTCGKLARLLKGQRRRPLLVPADVYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI+QL+ + S + S D + EA + A D +I+DTAGRL + LM Sbjct: 143 AAIEQLRTLGRQLSVETFDSRADQDPVDICREALRYATLNGFDTVILDTAGRLQIDEYLM 202 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 +++R+ + + P +L V DA TGQ A+ F+ TG+++TK+DG A+G Sbjct: 203 ---NELVRIKEAVQ---PREILFVADAMTGQEAVNVATGFNERLDITGVVLTKLDGDAKG 256 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + I PV +G+GE ++ LE F + I G D Sbjct: 257 GAALSIRAVTGKPVKLVGLGEKLDALEVFYPDRLVSRILGMGD 299 >gi|325281983|ref|YP_004254525.1| signal recognition particle protein [Odoribacter splanchnicus DSM 20712] gi|324313792|gb|ADY34345.1| signal recognition particle protein [Odoribacter splanchnicus DSM 20712] Length = 441 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 115/229 (50%), Gaps = 9/229 (3%) Query: 90 ELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA-A 146 +++H L L K D P +IL+ G+ G GKTT GK + + + K L A Sbjct: 76 KIVHDELAELMGGKNVEVDIKGNPAIILMSGLQGSGKTTFSGKFANLLKNKKGKKPLLVA 135 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 D +R AAI+QLK+ ++ E D +A +A KQA+AK DV+I+DTAGRL Sbjct: 136 CDVYRPAAIEQLKVLGEQIQVPVYSDETTKDPVRIALDAIKQAKAKGYDVVIVDTAGRLA 195 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + +M I + + P+ L V+DA TGQ+A+ F+ G+I+TK+ Sbjct: 196 IDEQMMNEIAAIKEAIH------PNETLFVVDAMTGQDAVNTAREFNERLDFNGVILTKL 249 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG RGG + I P+ ++G GE + L+ F + + I G D Sbjct: 250 DGDTRGGAALSIRTVVNKPIKYVGTGEKLEALDAFHPERMADRILGMGD 298 >gi|238809775|dbj|BAH69565.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 459 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 8/211 (3%) Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADR 164 + RP++I++ G+ G GKTT KL+ + K ++ A D +R AA+ QL A Sbjct: 101 ITARPYIIMMAGLQGSGKTTACAKLAYYLRKKNFVTKPLVVAADIYRPAAVQQLVTLAKS 160 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 D+ A + EA K A A+K D++IIDTAGRL + LM + + ++ Sbjct: 161 IQIDYFEKGTNVSAQDIVKEALKVADAQKNDLIIIDTAGRLSIDEPLMQELWDLKKI--- 217 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P + V DA +GQ+ L E F+ TG I+TK+D ARGG + + K+ Sbjct: 218 ---ANPSEIFFVADALSGQDILNVAETFNNKLKLTGTIITKLDSDARGGAALSLTKMLKL 274 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE +++L+ F + I G D Sbjct: 275 PIRFIGTGEKVSNLDLFYPDRMADRILGMGD 305 >gi|66362756|ref|XP_628344.1| SRP54. signal recognition 54. GTpase. [Cryptosporidium parvum Iowa II] gi|46229785|gb|EAK90603.1| SRP54. signal recognition 54. GTpase. [Cryptosporidium parvum Iowa II] Length = 515 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 8/228 (3%) Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 V EL++ +L P P+ + +VI+ VG+ G GKTT K + G K L Sbjct: 95 VEELVN-ILTPSRTPYVPQ-RDKSNVIVFVGLQGSGKTTTCTKFANYYQRRGWKTALVCA 152 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DTFR+ A DQLK A + F S +D +A + ++ + + D++I+DT+GR Sbjct: 153 DTFRAGAFDQLKQNATKVKIPFYGSYTETDPVKIARDGVREFRKEGYDLIIVDTSGRHKQ 212 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 S L +M +V+ + P V+ V+D+ GQ Q F +I+TK+D Sbjct: 213 ESSLFV---EMEQVVMETN---PDDVVFVMDSHIGQACYDQAMAFCNAVDVGSVIITKLD 266 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G A+GGG + V P+ F+G GE ++ EPF K F + + G D Sbjct: 267 GHAKGGGALSAVAATGAPIIFIGTGEHFDEFEPFETKGFVSRLLGLGD 314 >gi|312221554|emb|CBY01494.1| similar to signal recognition particle 54 kda protein [Leptosphaeria maculans] Length = 533 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 150/301 (49%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVA----QKIVEELLTKRYAKD 78 ++ +TD+ S LD D + +E+ + L+ +D+ V + Q I + K A Sbjct: 9 RINAAVTDLTRSPNLDEKAFDAMVKEISNALVEADVNVKLVMNLRQSIKRTVDFKHLAPG 68 Query: 79 VS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 V+ +Q+ +YD EL+ K++ P ++PF + +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKAVYD--ELV-KLVDPHAEPFKPR-KGKSNVIMFVGLQGAGKTTTCTKLARW 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G K L DTFR+ A DQLK A + + S +D +A E ++ + ++ Sbjct: 125 YQARGFKACLVCADTFRAGAFDQLKQNATKAKIPYYGSHTQTDPVVVAGEGVEKFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 +++I+DT+GR L +M+++ + P + VLD T GQ A Q F Sbjct: 185 EIIIVDTSGRHRQEKDL---FDEMVQIQNAVQ---PDQTIMVLDGTIGQAAESQARAFKE 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +++TK DG A GGG I V P+ F+G GE + DLE F + F + + G Sbjct: 239 AADFGAIVITKTDGAAAGGGAISAVAATHTPIVFIGNGEHLLDLERFAPQAFVSKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|21242042|ref|NP_641624.1| signal recognition particle protein [Xanthomonas axonopodis pv. citri str. 306] gi|21107444|gb|AAM36160.1| signal recognition particle protein [Xanthomonas axonopodis pv. citri str. 306] Length = 458 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 83/275 (30%), Positives = 140/275 (50%), Gaps = 22/275 (8%) Query: 39 RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 R ++ +RE E+ L+ +D+ + V Q ++E + + ++V Q ++ V + Sbjct: 21 RLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKVVRD 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149 + ++ + N + P ++L+ G+ G GKTT +GKL+K + + K VM+ + D Sbjct: 81 ELTAVMGAAATDLNLNVPA-PAIVLMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADV 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI+QLK A++ F S+ + A A+ VDVL++DTAGRL ++ Sbjct: 140 YRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDARKSFVDVLLVDTAGRLAIDA 199 Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 +M I + HA P L V+DA TGQ+A + F TG+++TK Sbjct: 200 AMMDEIKAL---------HAAVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKT 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 DG ARGG + + P+ F+G GE I+ L+ F Sbjct: 251 DGDARGGAALSVRYITGKPIKFVGTGEKIDGLDVF 285 >gi|319441356|ref|ZP_07990512.1| signal recognition particle protein [Corynebacterium variabile DSM 44702] Length = 532 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 140/284 (49%), Gaps = 30/284 (10%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-------QRVLYDVSELIHKMLMPLSKPFNW 105 L+ +D+ + V + ++ + K A V V Q+V+ V E + ++L ++ N Sbjct: 38 LLEADVSLTVVRGFIKRV--KERANGVVVSEALNPAQQVIKIVDEELKEILGGETRRLNL 95 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR- 164 + P VI++ G+ G GKTT+ GKL+K + G ML A D R A+ QL+I +R Sbjct: 96 -AKNPPTVIMLAGLQGAGKTTLAGKLAKHLVKQGHTPMLVACDLQRPGAVQQLQIVGERA 154 Query: 165 ----------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 TS D + E+G+ D A+A ++A+ K DV+IIDTAGRL + L Sbjct: 155 DVTTFAPDPGTSLDSLDHEMGTSHGDPVAVAQAGIEEARRTKHDVVIIDTAGRLGIDEEL 214 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M + IR D P VL V+DA GQ+A+ E F TG+++TK+DG AR Sbjct: 215 MTQ-ARNIR-----DAVNPDEVLFVIDAMIGQDAVTTAEAFRDGVDFTGVVLTKLDGDAR 268 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 GG + I P+ + GE + D + F + I G D Sbjct: 269 GGAALSIREVTGKPILYASTGEKLEDFDIFHPDRMANRILGMGD 312 >gi|322389552|ref|ZP_08063102.1| signal recognition particle protein [Streptococcus parasanguinis ATCC 903] gi|321143746|gb|EFX39174.1| signal recognition particle protein [Streptococcus parasanguinis ATCC 903] Length = 523 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 105/206 (50%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + + Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 A + + +QA+A D ++IDTAGRL + LM + R +K L Sbjct: 161 FSLGTEVPAVEIVRQGLEQARANHNDYVLIDTAGRLQIDEKLMGEL----RDVKAL--AE 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P+ +L V+DA GQ A F+ TG+I+TK+DG RGG + + P+ F Sbjct: 215 PNEILLVVDAMIGQEAANVAREFNEQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFT 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I D+E F S I G D Sbjct: 275 GTGEKITDIETFHPDRMSGRILGMGD 300 >gi|254700468|ref|ZP_05162296.1| signal recognition particle protein [Brucella suis bv. 5 str. 513] gi|261750971|ref|ZP_05994680.1| signal recognition particle protein [Brucella suis bv. 5 str. 513] gi|261740724|gb|EEY28650.1| signal recognition particle protein [Brucella suis bv. 5 str. 513] Length = 523 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GK++K++++ K V++A+ DT R AA +QL+ +T D Sbjct: 100 PVVIMMVGLQGSGKTTTTGKIAKRLTERQRKRVLMASLDTRRPAAQEQLRQLGLQTGVDT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ DV+I+DTAGR H + LM + + + Sbjct: 160 LPIIAGQSPVEIARRAVQAAKLGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH +L V D+ TGQ+A+ F G TG+++T+MDG RGG + + P+ + Sbjct: 214 PHKILLVADSLTGQDAVNLARNFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GE ++ LE F K + I G D Sbjct: 274 ATGEKMDALEEFYPKRIADRILGMGD 299 >gi|195491937|ref|XP_002093779.1| GE21487 [Drosophila yakuba] gi|194179880|gb|EDW93491.1| GE21487 [Drosophila yakuba] Length = 508 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 113/226 (50%), Gaps = 8/226 (3%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 EL+ K++ P KP+ + +V++ VG+ G GKTT KL+ K L DT Sbjct: 82 ELV-KLVDPGVKPYQ-PIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+ A DQ+K A + F S D +A E + + +++I+DT+GR Sbjct: 140 FRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQEGVDMFKREGFEMIIVDTSGRHKQEE 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 L +L + +P +++ V+DAT GQ Q + F +I+TK+DG Sbjct: 200 SLFE------EMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGH 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 A+GGG + V + P+ F+G GE I+DLEPF K F + + G D Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 299 >gi|319947050|ref|ZP_08021284.1| signal recognition particle protein [Streptococcus australis ATCC 700641] gi|319747098|gb|EFV99357.1| signal recognition particle protein [Streptococcus australis ATCC 700641] Length = 523 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 105/206 (50%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + + Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 A + + +QA+A D ++IDTAGRL + LM + R +K L Sbjct: 161 FSLGTEVPAVEIVRQGLEQARANHNDYVLIDTAGRLQIDEKLMGEL----RDVKAL--AE 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P+ +L V+DA GQ A F+ TG+I+TK+DG RGG + + P+ F Sbjct: 215 PNEILLVVDAMIGQEAANVAREFNEQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFT 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I D+E F S I G D Sbjct: 275 GTGEKITDIETFHPDRMSGRILGMGD 300 >gi|312866548|ref|ZP_07726763.1| signal recognition particle protein [Streptococcus parasanguinis F0405] gi|311097847|gb|EFQ56076.1| signal recognition particle protein [Streptococcus parasanguinis F0405] Length = 518 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 105/206 (50%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + + Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 A + + +QA+A D ++IDTAGRL + LM + R +K L Sbjct: 161 FSLGTEVPAVEIVRQGLEQARANHNDYVLIDTAGRLQIDEKLMGEL----RDVKAL--AE 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P+ +L V+DA GQ A F+ TG+I+TK+DG RGG + + P+ F Sbjct: 215 PNEILLVVDAMIGQEAANVAREFNEQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFT 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I D+E F S I G D Sbjct: 275 GTGEKITDIETFHPDRMSGRILGMGD 300 >gi|239832906|ref|ZP_04681235.1| signal recognition particle protein [Ochrobactrum intermedium LMG 3301] gi|239825173|gb|EEQ96741.1| signal recognition particle protein [Ochrobactrum intermedium LMG 3301] Length = 710 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GK++K++++ K V++A+ DT R AA +QL+ +T D Sbjct: 287 PVVIMMVGLQGSGKTTTTGKIAKRLTERQRKKVLMASLDTRRPAAQEQLRQLGIQTGVDT 346 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ DV+I+DTAGR H + LM + + + Sbjct: 347 LPIIAGQSPVEIAKRAVQAAKLGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------ 400 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH +L V D+ TGQ+A+ F G TG+++T+MDG RGG + + P+ + Sbjct: 401 PHEILLVADSLTGQDAVNLARNFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLI 460 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GE ++ LE F K + I G D Sbjct: 461 ATGEKMDALEEFYPKRIADRILGMGD 486 >gi|303258186|ref|ZP_07344193.1| signal recognition particle protein [Burkholderiales bacterium 1_1_47] gi|302858939|gb|EFL82023.1| signal recognition particle protein [Burkholderiales bacterium 1_1_47] Length = 464 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 110/209 (52%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166 + P +IL+ G+ G GKTT GKL K + + K V+ + D +R AAIDQL+ + + + Sbjct: 101 TQPPAIILLAGLQGAGKTTTAGKLGKWLKEEKKKKVLTVSADVYRPAAIDQLQTVSQQAN 160 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S +A +A + A+ DVLI+DTAGRL + +M + + + L Sbjct: 161 IDFFPSTPNEKPLDIARKALEYAKLHYYDVLIVDTAGRLAIDEQMMNEVSDLEKFLN--- 217 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P V+DA GQ+A+ + F TG+I+TK+DG +RGG + + + P+ Sbjct: 218 ---PIETFFVVDAMVGQDAVNTAKAFGEKLPLTGVILTKVDGDSRGGAALSVRMVTGKPI 274 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+GVGE +N + F + + I G D Sbjct: 275 KFMGVGEKLNGFQRFDPQAMAGRILGMGD 303 >gi|325528039|gb|EGD05259.1| signal recognition particle protein [Burkholderia sp. TJI49] Length = 455 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 110/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT +GKL+K + + KV+ + D +R AAI QLK +++ ADF Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIMQLKTVSEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S +A A A+ DVLI+DTAGRL + +M I + VLK Sbjct: 164 FPSTPEQKPVDIALAAVDWAKRHYHDVLIVDTAGRLGIDEAMMQEIAALHGVLK------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG +RGG + + P+ F+ Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F + I G D Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303 >gi|145514351|ref|XP_001443086.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124410447|emb|CAK75689.1| unnamed protein product [Paramecium tetraurelia] Length = 507 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 79/275 (28%), Positives = 127/275 (46%), Gaps = 20/275 (7%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH-------------KMLMPLS 100 I +I +A+ + V K+ +DV ++ L + + H +ML Sbjct: 31 ILGEIAMALLKADVNAKFIKKLREDVKMEFKLCEEENINHQKLIQKAVVDGLTRMLESDR 90 Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 KPF + +VI+ VG+ G GKTT K + G KV L DTFR+ A DQLK Sbjct: 91 KPFQPK-KGKQNVIMFVGLQGSGKTTTCTKYAYYYQKKGWKVALVCADTFRAGAFDQLKQ 149 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A + F S +D ++ E + + +++I+DT+GR + L + ++ Sbjct: 150 NATKVRVPFYGSYTEADPVQISQEGVNVFKKEAFEIIIVDTSGRHKQENDLFEEMKQVEA 209 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 +K P ++ V+D++ GQ Q F +I+TK+DG A+GGG + V Sbjct: 210 AVK------PDDIVFVMDSSIGQACYDQALAFKKAVNVGSVIITKLDGHAKGGGALSAVA 263 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + P+ F+G GE +DLE F A F + G D Sbjct: 264 ATESPIVFIGEGEHFDDLESFEASSFVRRLLGLGD 298 >gi|239813969|ref|YP_002942879.1| signal recognition particle protein [Variovorax paradoxus S110] gi|239800546|gb|ACS17613.1| signal recognition particle protein [Variovorax paradoxus S110] Length = 462 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 109/209 (52%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P VIL+ G+ G GKTT KL+K + + KV+ +GD +R AAI+QLK+ + Sbjct: 97 AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKMVTKQAG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 A++ S +A A A+ DVL++DTAGRL + +LM I ++ L Sbjct: 157 AEWFPSTPDQKPLDIARAALDHAKRHFFDVLLVDTAGRLAIDEVLMTEIKQLHGALD--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA GQ+A+ + F TG+I+TK DG +RGG + + +P+ Sbjct: 214 ---PVETLFVVDAMQGQDAINTAKAFKEALPLTGIILTKTDGDSRGGAALSVRQVTGVPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G E I+ LE F A+ + I G D Sbjct: 271 KFAGTSEKIDGLEVFDAERHAGRILGMGD 299 >gi|256082003|ref|XP_002577253.1| signal recognition particle 54 kD protein [Schistosoma mansoni] gi|238662557|emb|CAZ33490.1| signal recognition particle 54 kD protein, putative [Schistosoma mansoni] Length = 538 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 66/195 (33%), Positives = 102/195 (52%), Gaps = 6/195 (3%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 +VI++VG+ G GKTT KL+ G K + DTFR+ A DQLK A + F Sbjct: 102 NVIMLVGLQGCGKTTTATKLAYFYQRKGWKTCMICADTFRAGAFDQLKQNATKARIPFYG 161 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 S +D +A + ++ +K +++I+DT+GR L +M++V ++P Sbjct: 162 SYTETDPVVIARDGVQKFVEEKFEIIIVDTSGRHRQEDSLFE---EMLQVSNAIEPD--- 215 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 V+ VLDA+ GQ Q F A + +I+TK+DG A+GGG + V P+ F+G Sbjct: 216 HVIYVLDASIGQACEAQASAFKAKVDVSSVIVTKLDGHAKGGGALSAVAATHSPITFIGT 275 Query: 292 GEGINDLEPFVAKDF 306 GE + D E F + F Sbjct: 276 GEHVEDFEQFRVQPF 290 >gi|331000256|ref|ZP_08323940.1| signal recognition particle protein [Parasutterella excrementihominis YIT 11859] gi|329572422|gb|EGG54075.1| signal recognition particle protein [Parasutterella excrementihominis YIT 11859] Length = 464 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 110/209 (52%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166 + P +IL+ G+ G GKTT GKL K + + K V+ + D +R AAIDQL+ + + + Sbjct: 101 TQPPAIILLAGLQGAGKTTTAGKLGKWLKEEKKKKVLTVSADVYRPAAIDQLQTVSQQAN 160 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S +A +A + A+ DVLI+DTAGRL + +M + + + L Sbjct: 161 IDFFPSTPNEKPLDIARKALEYAKLHYYDVLIVDTAGRLAIDEQMMNEVSDLEKFLN--- 217 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P V+DA GQ+A+ + F TG+I+TK+DG +RGG + + + P+ Sbjct: 218 ---PIETFFVVDAMVGQDAVNTAKAFGEKLPLTGVILTKVDGDSRGGAALSVRMVTGKPI 274 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+GVGE +N + F + + I G D Sbjct: 275 KFMGVGEKLNGFQRFDPQAMAGRILGMGD 303 >gi|160896956|ref|YP_001562538.1| signal recognition particle protein [Delftia acidovorans SPH-1] gi|160362540|gb|ABX34153.1| signal recognition particle protein [Delftia acidovorans SPH-1] Length = 464 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 109/209 (52%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P VIL+ G+ G GKTT KL+K + + KV+ +GD +R AAI+QLK + Sbjct: 97 AQPPAVILMAGLQGAGKTTTTAKLAKHLIERRKKKVLTVSGDVYRPAAIEQLKTVTAQAG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 A++ S +A A A+ DVL++DTAGRL + +LMA I + LK Sbjct: 157 AEWFPSTPDQKPHDIAVAALDYAKRHFFDVLLVDTAGRLAIDELLMAEIKDLHATLK--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA GQ+A+ + F TG+++TK+DG +RGG + + P+ Sbjct: 214 ---PVETLFVVDAMQGQDAINTAKAFKEALPLTGIVLTKLDGDSRGGAALSVRQITGAPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F GV E I+ LE F A + + G D Sbjct: 271 KFAGVSEKIDGLEVFDADRHAQRVLGMGD 299 >gi|24379497|ref|NP_721452.1| signal recognition particle protein subunit, Ffh [Streptococcus mutans UA159] gi|26007034|sp|Q54431|SRP54_STRMU RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog gi|24377436|gb|AAN58758.1|AE014944_8 signal recognition particle protein subunit, Ffh [Streptococcus mutans UA159] Length = 516 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 86/305 (28%), Positives = 148/305 (48%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L+ ++ R+L + V +E+ L+ +D+ + V ++ ++ + + Sbjct: 3 FESLTERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKEFIKRVRKRAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V Q+++ V+E + +L + S P +I++VG+ G GKTT GKL Sbjct: 63 HEVIDTLDPSQQIIKIVNEELTAVLGSETAEIEKS-SKIPTIIMMVGLQGAGKTTFAGKL 121 Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 + K+ + + ++ A D +R AAIDQLK + + A + + QA+ Sbjct: 122 ANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTEHSAVEIVSQGLAQAK 181 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + D ++IDTAGRL + LM + R +K L P+ +L V+D+ GQ A Sbjct: 182 ENRNDYVLIDTAGRLQIDEKLMTEL----RDIKAL--ANPNEILLVVDSMIGQEAANVAR 235 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG RGG + + P+ F G GE I D+E F S+ I Sbjct: 236 EFNQQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSRI 295 Query: 311 TGCLD 315 G D Sbjct: 296 LGMGD 300 >gi|305665094|ref|YP_003861381.1| signal recognition particle protein [Maribacter sp. HTCC2170] gi|88709846|gb|EAR02078.1| signal recognition particle protein [Maribacter sp. HTCC2170] Length = 446 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/211 (35%), Positives = 108/211 (51%), Gaps = 7/211 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 D S P VIL+ G+ G GKTT GKL+ + + K +L A D +R AAIDQL + D+ Sbjct: 94 DLSGTPSVILMSGLQGSGKTTFSGKLANFLKTKKSKKPLLVACDVYRPAAIDQLHVVGDQ 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + +D +LA A+A +V+IIDTAGRL + +M I + +K Sbjct: 154 IGIEVYSDRENNDPVSLAQAGVAHAKANGHNVVIIDTAGRLAVDEKMMTEISNIHGAVK- 212 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P L V+D+ TGQ+A+ + F+ V G+I+TK+DG RGG I I Sbjct: 213 -----PQETLFVVDSMTGQDAVNTAKAFNDVLNFDGVILTKLDGDTRGGAAISIKSVVDK 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + ++ F + I G D Sbjct: 268 PIKFIGTGEKMEAIDVFHPSRMAERILGMGD 298 >gi|264680208|ref|YP_003280118.1| signal recognition particle protein [Comamonas testosteroni CNB-2] gi|299533984|ref|ZP_07047336.1| signal recognition particle protein [Comamonas testosteroni S44] gi|262210724|gb|ACY34822.1| signal recognition particle protein [Comamonas testosteroni CNB-2] gi|298717893|gb|EFI58898.1| signal recognition particle protein [Comamonas testosteroni S44] Length = 463 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 109/209 (52%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P VIL+ G+ G GKTT KL+K + + KV+ +GD +R AAI+QLK + Sbjct: 97 AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTAQAG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 A++ S +A A A+ DVL++DTAGRL + +LMA I + LK Sbjct: 157 AEWFPSTPDQKPHDIAVAAIDYAKKHFFDVLLVDTAGRLAIDELLMAEIKDLHATLK--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA GQ+A+ + F TG+++TK+DG +RGG + + P+ Sbjct: 214 ---PVETLFVVDAMQGQDAVNTAKAFKEALPLTGIVLTKLDGDSRGGAALSVRQITGAPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F GV E I+ LE F A + + G D Sbjct: 271 KFAGVSEKIDGLEVFDADRHAQRVLGMGD 299 >gi|320457371|dbj|BAJ67992.1| signal recognition particle protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 553 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 90/324 (27%), Positives = 155/324 (47%), Gaps = 36/324 (11%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F+S + +L + S +L DG E+ L+ +D+ + V + ++ + Sbjct: 7 FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGKVRERALG 66 Query: 77 KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +VS Q+V+ V+E + +L + +P N+ + P +I++ G+ G GKTT+ GK Sbjct: 67 TEVSDALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 125 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175 L + ++G +L A D R A+ QL++ +R E G Sbjct: 126 LGYWLKESGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVAAPGQT 185 Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 D +A ++ + A+ K D +IIDTAGRL + LM + R ++ D P+ +L Sbjct: 186 SGDPVKVARDSIELARQKLYDTVIIDTAGRLGVDEELM----RQARDIR--DAVQPNEIL 239 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DA GQ+A+R + F TG++++K+DG ARGG + + P+ F GEG Sbjct: 240 FVIDAMIGQDAVRTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASNGEG 299 Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318 + D E F ++ I LD G+ Sbjct: 300 LKDFEVFHPDRMASRI---LDMGD 320 >gi|262341219|ref|YP_003284074.1| signal recognition particle protein [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272556|gb|ACY40464.1| signal recognition particle protein [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 452 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 131/263 (49%), Gaps = 19/263 (7%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS--------VQRVLYDVSELIHKMLMP 98 +E+ LI +D+ +A+ + + K K V + +++YD EL+ L+ Sbjct: 32 KEIVRALIDADVNYKIAKDFIRRVKEKSIGKKVLTSLNPKQLITKIVYD--ELV---LLM 86 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 K + S P +IL+ G+ G GKT+ KL+ + +L A D R AAIDQL Sbjct: 87 GGKSIEMNLSKDPSIILICGLQGSGKTSFSSKLAFFLRKKNKNPLLVAADIHRPAAIDQL 146 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 K A++ + + + + ++ + K +V+IIDTAGRL + I+M I K+ Sbjct: 147 KFIAEKVNIPIFYLKNSKNIIEILDKSVIYSFKNKNNVIIIDTAGRLAIDQIMMEEIVKI 206 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 + K P +L V+DA TGQ+A+ + F + G++MTK+DG +RGG I + Sbjct: 207 HQHSK------PDEILFVVDAMTGQDAINTAQSFSKILNFDGIVMTKLDGDSRGGAAITM 260 Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301 P+ F+ GE I DLE F Sbjct: 261 SSAVGKPIKFISNGEKIEDLEIF 283 >gi|313836655|gb|EFS74369.1| signal recognition particle protein [Propionibacterium acnes HL037PA2] gi|314928163|gb|EFS91994.1| signal recognition particle protein [Propionibacterium acnes HL044PA1] gi|314972161|gb|EFT16258.1| signal recognition particle protein [Propionibacterium acnes HL037PA3] gi|328907975|gb|EGG27735.1| signal recognition particle protein [Propionibacterium sp. P08] Length = 528 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 81/284 (28%), Positives = 144/284 (50%), Gaps = 18/284 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D ++ L+ +D+ ++V ++ V + + + +++S Q+++ V+E + ++L Sbjct: 28 DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + P V+++ G+ G GKTT+ GKL++ + G +LAA D R A+ Q Sbjct: 88 GQTRTVRF-AKNPPTVVMLAGLQGAGKTTLAGKLARWFKEEGHSPLLAACDLQRPNAVTQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L++ +R E G+ D +A +A +A+ K DV+IIDTAGRL ++ +MA Sbjct: 147 LQVVGERAGVHVFAPEPGNGVGDPIQVARDAVAEAEHKLYDVVIIDTAGRLGVDAEMMAQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + P L V+DA GQ+A+ F G G+++TK+DG ARGG Sbjct: 207 AADIKAATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFNGVVLTKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + I P+ F GEG+ D + F ++ I LD G+ Sbjct: 261 ALSIARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301 >gi|291295393|ref|YP_003506791.1| signal recognition particle protein [Meiothermus ruber DSM 1279] gi|290470352|gb|ADD27771.1| signal recognition particle protein [Meiothermus ruber DSM 1279] Length = 434 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 15/269 (5%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSK-PFNWD 106 L+ +D+ VA+ V ++ K + V +++L V E + +ML +K P Sbjct: 38 LLEADVNFEVAKNFVNKVQEKTLGQAVLESLTPAEQILSVVYEELVEMLGGEAKQPL--- 94 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + ++ +VG+ G GKTT GKL+ G + +L A DT R AA +QL+I ++ Sbjct: 95 LKNEGNLWFMVGLQGSGKTTTSGKLAHFYKSKGRRPLLVAADTQRPAAREQLRILGEKIG 154 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + G + D++I+DTAGRL + LM + ++ +V+ Sbjct: 155 VPVLEVADGERPETTRARLQQHLTFDYRDLVIVDTAGRLQIDQALMDELAQLKQVM---- 210 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+D+ TGQ AL + F G TGLI+TK+DG ARGG + P+ Sbjct: 211 --GPSETLLVVDSMTGQEALNVSKAFDERIGVTGLILTKLDGDARGGAALSARYVTGKPI 268 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 YF GV E + LEPF + I G D Sbjct: 269 YFAGVSEKVEGLEPFYPDRLAQRILGMGD 297 >gi|213691304|ref|YP_002321890.1| signal recognition particle protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522765|gb|ACJ51512.1| signal recognition particle protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 550 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 90/324 (27%), Positives = 155/324 (47%), Gaps = 36/324 (11%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F+S + +L + S +L DG E+ L+ +D+ + V + ++ + Sbjct: 4 FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGKVRERALG 63 Query: 77 KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +VS Q+V+ V+E + +L + +P N+ + P +I++ G+ G GKTT+ GK Sbjct: 64 TEVSDALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 122 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175 L + ++G +L A D R A+ QL++ +R E G Sbjct: 123 LGYWLKESGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVAAPGQT 182 Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 D +A ++ + A+ K D +IIDTAGRL + LM + R ++ D P+ +L Sbjct: 183 SGDPVKVARDSIELARQKLYDTVIIDTAGRLGVDEELM----RQARDIR--DAVQPNEIL 236 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DA GQ+A+R + F TG++++K+DG ARGG + + P+ F GEG Sbjct: 237 FVIDAMIGQDAVRTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASNGEG 296 Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318 + D E F ++ I LD G+ Sbjct: 297 LKDFEVFHPDRMASRI---LDMGD 317 >gi|121595918|ref|YP_987814.1| signal recognition particle subunit FFH/SRP54 (srp54) [Acidovorax sp. JS42] gi|120607998|gb|ABM43738.1| signal recognition particle subunit FFH/SRP54 (srp54) [Acidovorax sp. JS42] Length = 459 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 109/209 (52%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P VIL+ G+ G GKTT KL+K + + KV+ +GD +R AAI+QLK + Sbjct: 97 AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTKQAG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 A++ S +A A A+ DVL++DTAGRL + +LM I + VL Sbjct: 157 AEWFPSTPDQKPRDIALGALDYAKKHFFDVLLVDTAGRLAIDEVLMQEIKDLHAVLN--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA GQ+A+ + F TG+++TK+DG +RGG + + P+ Sbjct: 214 ---PVETLFVVDAMQGQDAVNTAKAFKEALPLTGIVLTKLDGDSRGGAALSVRQVTGAPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F GV E I+ LE F A+ + I G D Sbjct: 271 KFAGVSEKIDGLEVFDAERHAGRILGMGD 299 >gi|21223941|ref|NP_629720.1| signal recognition particle protein [Streptomyces coelicolor A3(2)] gi|3191979|emb|CAA19378.1| signal recognition particle protein [Streptomyces coelicolor A3(2)] Length = 550 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 85/284 (29%), Positives = 143/284 (50%), Gaps = 18/284 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + ++++ + +VS Q+VL V+E + +L Sbjct: 62 DATAREIRIALLEADVALPVVRAFIKKVKERSLGAEVSKALNPAQQVLKIVNEELVGILG 121 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + P VI++ G+ G GKTT+ GKL + + G +L A D R A++Q Sbjct: 122 GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGHWLKEQGHSPLLVACDLQRPNAVNQ 180 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R E G+ D +A ++ + A+AK D++I+DTAGRL + LM Sbjct: 181 LSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEFAKAKVHDLVIVDTAGRLGIDQELMQQ 240 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P +L V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 241 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 294 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + I P+ F GE ++D + F ++ I LD G+ Sbjct: 295 ALSIASVTGKPIMFASNGEKLDDFDAFHPDRMASRI---LDMGD 335 >gi|302920457|ref|XP_003053074.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256734014|gb|EEU47361.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 658 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/210 (35%), Positives = 111/210 (52%), Gaps = 22/210 (10%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 RP+V+ +VGVNGVGK+T + K+ + KV++AAGDTFRS A++QL + R + Sbjct: 446 RPYVMSIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVEQLAVHV-RNLKEL 504 Query: 170 VCSE----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 E G DAA +A +A A + DV++IDTAGR HN+ LM+ + K Sbjct: 505 TAREGGRVELYQKGYGKDAATVAKDAVTHAAQEGFDVVLIDTAGRRHNDQRLMSSLEKFA 564 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT----GLIMTKMDGTARG-GG 274 + + P +L V +A G +++ Q F+A G G I++K D G Sbjct: 565 KFAQ------PDKILMVGEALVGTDSVAQARNFNAAFGAVRTLDGFIISKCDTVGDMVGT 618 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 L+ +V +PV F+GVG+ +DL F K Sbjct: 619 LVSLVHATNVPVLFVGVGQHYSDLRNFSVK 648 >gi|242373529|ref|ZP_04819103.1| signal recognition particle protein Ffh [Staphylococcus epidermidis M23864:W1] gi|242348892|gb|EES40494.1| signal recognition particle protein Ffh [Staphylococcus epidermidis M23864:W1] Length = 455 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT GKL+ M K ML AGD +R AAIDQL+ + Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAGDIYRPAAIDQLQTVGKQIDIPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + A K A+ + +D +IIDTAGRLH + LM + ++ + K Sbjct: 161 YSEGDQVPPQQIVENALKHAKEEHLDFVIIDTAGRLHIDEALMNELQEVKEISK------ 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P ++ V+DA TGQ+A+ + F +G+ +TK+DG RGG + I + P+ F+ Sbjct: 215 PDEIMLVVDAMTGQDAVNVAQSFDDQLDVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFV 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+ E ++ LE F + ++ I G D Sbjct: 275 GMSEKLDGLELFHPERMASRILGMGD 300 >gi|221065175|ref|ZP_03541280.1| signal recognition particle protein [Comamonas testosteroni KF-1] gi|220710198|gb|EED65566.1| signal recognition particle protein [Comamonas testosteroni KF-1] Length = 462 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 109/209 (52%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P VIL+ G+ G GKTT KL+K + + KV+ +GD +R AAI+QLK + Sbjct: 97 AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTAQAG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 A++ S +A A A+ DVL++DTAGRL + +LMA I + LK Sbjct: 157 AEWFPSTPDQKPHDIAVAAIDYAKKHFFDVLLVDTAGRLAIDELLMAEIKDLHATLK--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA GQ+A+ + F TG+++TK+DG +RGG + + P+ Sbjct: 214 ---PVETLFVVDAMQGQDAVNTAKAFKEALPLTGIVLTKLDGDSRGGAALSVRQITGAPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F GV E I+ LE F A + + G D Sbjct: 271 KFAGVSEKIDGLEVFDADRHAQRVLGMGD 299 >gi|312865260|ref|ZP_07725488.1| signal recognition particle protein [Streptococcus downei F0415] gi|311099371|gb|EFQ57587.1| signal recognition particle protein [Streptococcus downei F0415] Length = 524 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I+++G+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + S Sbjct: 101 PTIIMMIGLQGAGKTTFAGKLANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQISVPV 160 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 ++G+D A + QA+ + D ++IDTAGRL + LM + +R +K L Sbjct: 161 F--DMGTDVPATEIVKNGLAQARENRNDYVLIDTAGRLQIDETLM----QELRDVKEL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+D+ GQ A F+ TG+++TK+DG RGG + + P+ Sbjct: 213 AQPNEILLVVDSMIGQEAANVAREFNQQLDITGVVLTKIDGDTRGGAALSVRQITGRPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|327460366|gb|EGF06703.1| signal recognition particle protein [Streptococcus sanguinis SK1057] Length = 524 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + ++++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARLLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QA+A D ++IDTAGRL + LM + ++ L Sbjct: 159 PVFALGTEIPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F++ TG+I+TK+DG RGG + + P+ Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|269958646|ref|YP_003328433.1| signal recognition particle protein [Anaplasma centrale str. Israel] gi|269848475|gb|ACZ49119.1| signal recognition particle protein [Anaplasma centrale str. Israel] Length = 451 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 92/290 (31%), Positives = 156/290 (53%), Gaps = 15/290 (5%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 L KG AS KL G IS + D V E++ L+ +D+ + V ++ + ++ +K Sbjct: 5 LAKGIASAVQKL--GGRREISDKDFD-LVLEDVTQALLDADVNLMVVEQFIGDVKSKIVG 61 Query: 77 KDVSVQRVLYD--VSELIHKMLMPL--SKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKL 131 +V V+ VL + + +L+ + L+ + ++ D S + P I++VG+ GVGKTT K+ Sbjct: 62 GEV-VKGVLPEQMIIKLMEECLIEVLGNEKSGLDLSGKAPVAIMMVGLQGVGKTTNTVKV 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K+ + KV++A+ D +R AA +QL + A D + G +A A K+A+ Sbjct: 121 AFKLKKSEKKVLVASLDVYRPAAQEQLGVLAQGVGVDSLPIVEGELPLDIAKRAMKEAKR 180 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 DV+I+DTAGRLH + + IG++ V K + +P+ + V+D GQ+A+ V Sbjct: 181 GGYDVVIVDTAGRLHIDQEM---IGELQLVKKEV---SPNETILVVDCMMGQDAVEVVRG 234 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 FH TG I T+ DG +RGG ++ + + P+ F+ GE DL+ F Sbjct: 235 FHDKLNLTGTIFTRADGDSRGGAILSMKMVSGCPIKFMSTGEKPEDLDDF 284 >gi|260907261|ref|ZP_05915583.1| signal recognition particle protein [Brevibacterium linens BL2] Length = 535 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 85/293 (29%), Positives = 146/293 (49%), Gaps = 19/293 (6%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L ++ RL DG E+ L+ +D+ + V + + + + Sbjct: 2 FNSLSDRLTATFKNLRGKGRLSEADVDGTIREIRRALLDADVALPVVRAFTGRIRERALS 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++VS Q+V+ V++ + +L ++ N+ P VI++ G+ G GKTT+ GKL Sbjct: 62 EEVSGALNPGQQVVKVVNDELVGILGGETRRLNY-AKRPPTVIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188 + + G + ML A D R A++QL+I +R A E G+ + +A ++ + Sbjct: 121 AYWLKSEGHRPMLVAADLQRPNAVNQLEIVGERAGAFVYAPEPGNGVGNPVQVATDSLEV 180 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+AK DV+I+DTAGRL + LM + + P VL V+DA GQ+A++ Sbjct: 181 AKAKLHDVVIVDTAGRLGIDEELMQQAADIRSAVN------PDEVLFVIDAMIGQDAVKT 234 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 E F TG++++K+DG +RGG + + P+ F GE + + E F Sbjct: 235 AEAFLEGVDFTGVVLSKLDGDSRGGAALSVAEVTGKPIMFASTGESMKEFEQF 287 >gi|261196279|ref|XP_002624543.1| signal sequence receptor alpha subunit [Ajellomyces dermatitidis SLH14081] gi|239587676|gb|EEQ70319.1| signal sequence receptor alpha subunit [Ajellomyces dermatitidis SLH14081] gi|239614635|gb|EEQ91622.1| signal sequence receptor alpha subunit [Ajellomyces dermatitidis ER-3] gi|327356628|gb|EGE85485.1| signal sequence receptor alpha subunit [Ajellomyces dermatitidis ATCC 18188] Length = 650 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 89/276 (32%), Positives = 137/276 (49%), Gaps = 33/276 (11%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMP 98 RL DGV +EL + Q I L R A + S++++L S L + + + Sbjct: 377 RLCDGVEKEL------TGKKTGNFQSIDSAL---RTAMESSLRKILTPTSSLDLLREIEA 427 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 ++ P + RP+VI +VGVNGVGK+T + K+ + +V++AA DTFRS A++QL Sbjct: 428 VTSPSSTQKQRRPYVISIVGVNGVGKSTNLSKICFFLLQNNYRVLIAACDTFRSGAVEQL 487 Query: 159 KIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 ++ A R + E G DAA +A +A A DV++IDTAGR HN Sbjct: 488 RVHA-RNLKELSARENVGHVELYEKGYGKDAANVAKDAVSYGAANNFDVILIDTAGRRHN 546 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH----AVAGTTGLIM 263 + LM+ + K + + P + V +A G +++ Q F+ A G G I+ Sbjct: 547 DQRLMSSLEKFAKFAQ------PDKIFMVGEALVGTDSVMQARNFNQAFGAGRGLDGFII 600 Query: 264 TKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 +K D G L+ +V IP+ FLGVG+ DL Sbjct: 601 SKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 636 >gi|258647132|ref|ZP_05734601.1| signal recognition particle protein [Prevotella tannerae ATCC 51259] gi|260853095|gb|EEX72964.1| signal recognition particle protein [Prevotella tannerae ATCC 51259] Length = 452 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 86/284 (30%), Positives = 140/284 (49%), Gaps = 23/284 (8%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHK 94 V E L+D+ L+ +D+ VA+ +++ K Q VL V +++H Sbjct: 26 NVAETLKDVRRALLDADVNYKVAKSFTDDVKEKALG-----QHVLTAVKPGQLLVKIVHD 80 Query: 95 MLMPLSKPFNWDFS--HRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFR 151 L L DF+ P V+L+ G+ G GKTT+ GKL+ M + + +L A D +R Sbjct: 81 ELARLMGGTAADFNIEGHPAVVLMSGLQGSGKTTMSGKLALMMKTKKRRRPLLVACDVYR 140 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 AAIDQL ++ D ++A A K+A+AK D++I+DTAGRL + + Sbjct: 141 PAAIDQLHTLGEQIDVPVYSERDNQDPVSIALNAIKEAKAKSYDLVIVDTAGRLAIDEKM 200 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M I + ++ P+ L V+D+ TGQ+A+ + F+ G+++TK+DG R Sbjct: 201 MTEIATIKEHIR------PNETLFVVDSMTGQDAVNTAKEFNDRLDFDGVVLTKLDGDTR 254 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 GG + I P+ F+G GE + L+ F + + I G D Sbjct: 255 GGAALSIRTVVNKPIKFIGTGEKLEALDIFHPERMADRILGMGD 298 >gi|194866950|ref|XP_001971975.1| GG15264 [Drosophila erecta] gi|190653758|gb|EDV51001.1| GG15264 [Drosophila erecta] Length = 508 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 113/226 (50%), Gaps = 8/226 (3%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 EL+ K++ P KP+ + +V++ VG+ G GKTT KL+ K L DT Sbjct: 82 ELV-KLVDPGVKPYQ-PIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+ A DQ+K A + F S D +A E + + +++I+DT+GR Sbjct: 140 FRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQEGVDMFKREGFEMIIVDTSGRHKQEE 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 L +L + +P +++ V+DAT GQ Q + F +I+TK+DG Sbjct: 200 SLFE------EMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGH 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 A+GGG + V + P+ F+G GE I+DLEPF K F + + G D Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 299 >gi|209551321|ref|YP_002283238.1| signal recognition particle protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537077|gb|ACI57012.1| signal recognition particle protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 527 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 113/206 (54%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT K++ ++S K V++A+ DT R AA +QL+ + S D Sbjct: 100 PVVVMMVGLQGSGKTTTSAKIAHRLSTRDKKKVLMASLDTRRPAAQEQLRQLGAQASIDT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ DV+I+DTAGR H + LM +M + KR +PH Sbjct: 160 LPIISGQSPTDIAARAVQAARLGGHDVVILDTAGRTHIDEPLMV---EMADIKKRSNPH- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +L V D+ TGQ+A+ F G TGL++T+MDG RGG + + P+ + Sbjct: 216 --EILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE +++LE F + + I G D Sbjct: 274 GVGEKMSELEEFHPRRIADRILGMGD 299 >gi|327282058|ref|XP_003225761.1| PREDICTED: signal recognition particle receptor subunit alpha-like [Anolis carolinensis] Length = 649 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 88/297 (29%), Positives = 144/297 (48%), Gaps = 41/297 (13%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSK 101 D V E+++D LI ++ +A ++ E + K K + + V V + + + L+ + + Sbjct: 350 DPVLEKMKDHLIAKNVAAEIAVQLCESVAKKLEGKVMGTFTTVTSTVKQALQESLVQILQ 409 Query: 102 P----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 P + RP+VI GVNGVGK+T + K+S + + G V++AA DTFR Sbjct: 410 PQRRVDVLRDVMDAQRHRRPYVITFCGVNGVGKSTNLAKISFWLIENGFSVLIAACDTFR 469 Query: 152 SAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 + A++QL+ R +A G DAA +A EA A+ + DV++ Sbjct: 470 AGAVEQLRTHTRRLNALHPPENHSGRVMVQLYEKGYGKDAAGIAMEAILYARNQGFDVVL 529 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF------ 252 +DTAGR+ +N+ LM + K+I V + P VL V +A G A+ Q+ F Sbjct: 530 VDTAGRMQDNAPLMTALAKLIAV------NTPDLVLFVGEALVGNEAVDQLVKFNKALAD 583 Query: 253 HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 H++A T G+++TK D + G I + P+ F+G G+ DL AK Sbjct: 584 HSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAK 640 >gi|187778958|ref|ZP_02995431.1| hypothetical protein CLOSPO_02553 [Clostridium sporogenes ATCC 15579] gi|187772583|gb|EDU36385.1| hypothetical protein CLOSPO_02553 [Clostridium sporogenes ATCC 15579] Length = 449 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 85/287 (29%), Positives = 147/287 (51%), Gaps = 17/287 (5%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 +S + + + +RE ++ L+ +D+ V + ++ + K +V Q+V+ V+E Sbjct: 23 LSEKDIKEAMRE-VKLALLEADVNYKVVKNFIKSVTEKCMGNEVLGSLTPGQQVIKIVNE 81 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + +++ N S VI++VG+ G GKTT+ GKL+ + + +L A D + Sbjct: 82 ELTELMGSTESTLNSSTSGLT-VIMLVGLQGAGKTTMAGKLALHLRKRNKRPLLVACDVY 140 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 R AAI QL++ + D +G + ++ A + A+ K +V+IIDTAGRLH + Sbjct: 141 RPAAIKQLQVVGKQI--DIPVFTMGDKLSPVDISKAAIEHAKNNKNNVVIIDTAGRLHID 198 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM + + + P +L V+DA TGQ+A+ F+ +G+I+TK+DG Sbjct: 199 EELMDELHNIKEEVN------PTEILLVVDAMTGQDAVNVANNFNDKLDISGVILTKLDG 252 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I P+ F+G+GE +NDLE F ++ I G D Sbjct: 253 DTRGGAALSIKSMTGKPIKFVGLGEKMNDLEVFYPDRMASRILGMGD 299 >gi|172040476|ref|YP_001800190.1| signal recognition particle protein [Corynebacterium urealyticum DSM 7109] gi|171851780|emb|CAQ04756.1| signal recognition particle protein [Corynebacterium urealyticum DSM 7109] Length = 531 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 88/282 (31%), Positives = 139/282 (49%), Gaps = 26/282 (9%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + V + ++ + + VS Q+V+ V E + ++L ++ Sbjct: 38 LLEADVSLPVVRAFIKRIKERANGVIVSEALNPAQQVIKIVDEELKEILGGETRRLTL-A 96 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164 H P VI++ G+ G GKTT+ GKL++ +S G ML A D R A+ QL+I +R Sbjct: 97 KHPPTVIMLAGLQGAGKTTLAGKLARYLSKQGHTPMLVACDLQRPGAVQQLQIVGERAGV 156 Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 TS + E+G+ D +A + ++A + D++IIDTAGRL + LM Sbjct: 157 TTFAPDPGTSLESHDHEMGTSTGDPVEVAEKGIEEAYRTQHDIVIIDTAGRLGIDETLMT 216 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + IR D P VL V+DA TGQ+A+ E F TG+++TK+DG ARGG Sbjct: 217 Q-ARNIR-----DAVEPDEVLFVIDAMTGQDAVTTAEAFRDGVDFTGVVLTKLDGDARGG 270 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F GE + D + F ++ I G D Sbjct: 271 AALSIREVTGKPILFASTGEKLEDFDVFHPDRMASRILGMGD 312 >gi|256784958|ref|ZP_05523389.1| signal recognition particle protein [Streptomyces lividans TK24] Length = 516 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 81/267 (30%), Positives = 136/267 (50%), Gaps = 15/267 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + ++++ + +VS Q+VL V+E + +L Sbjct: 28 DATAREIRIALLEADVALPVVRAFIKKVKERSLGAEVSKALNPAQQVLKIVNEELVGILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + P VI++ G+ G GKTT+ GKL + + G +L A D R A++Q Sbjct: 88 GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGHWLKEQGHSPLLVACDLQRPNAVNQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R E G+ D +A ++ + A+AK D++I+DTAGRL + LM Sbjct: 147 LSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEFAKAKVHDLVIVDTAGRLGIDQELMQQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P +L V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301 + I P+ F GE ++D + F Sbjct: 261 ALSIASVTGKPIMFASNGEKLDDFDAF 287 >gi|289768849|ref|ZP_06528227.1| signal recognition particle protein [Streptomyces lividans TK24] gi|289699048|gb|EFD66477.1| signal recognition particle protein [Streptomyces lividans TK24] Length = 537 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 85/284 (29%), Positives = 143/284 (50%), Gaps = 18/284 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + ++++ + +VS Q+VL V+E + +L Sbjct: 49 DATAREIRIALLEADVALPVVRAFIKKVKERSLGAEVSKALNPAQQVLKIVNEELVGILG 108 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + P VI++ G+ G GKTT+ GKL + + G +L A D R A++Q Sbjct: 109 GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGHWLKEQGHSPLLVACDLQRPNAVNQ 167 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R E G+ D +A ++ + A+AK D++I+DTAGRL + LM Sbjct: 168 LSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEFAKAKVHDLVIVDTAGRLGIDQELMQQ 227 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P +L V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 228 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 281 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + I P+ F GE ++D + F ++ I LD G+ Sbjct: 282 ALSIASVTGKPIMFASNGEKLDDFDAFHPDRMASRI---LDMGD 322 >gi|194290777|ref|YP_002006684.1| signal recognition particle (srp) component with 4.5S RNA (ffs) [Cupriavidus taiwanensis LMG 19424] gi|193224612|emb|CAQ70623.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Cupriavidus taiwanensis LMG 19424] Length = 464 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 111/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +IL+ G+ G GKTT GKL+K + + K V+ + D +R AAI QLK +++ A+F Sbjct: 108 PAIILMAGLQGAGKTTTAGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGAEF 167 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S+ +A A A+ DVLI+DTAGRL + +M I + LK Sbjct: 168 FPSQPDQKPVDIARAAVDWARKHYHDVLIVDTAGRLGIDEAMMQEIAALHAELK------ 221 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG ARGG + + P+ F+ Sbjct: 222 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDARGGAALSVRHITGRPIKFV 281 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE ++ LEPF + I G D Sbjct: 282 GVGEKLDGLEPFYPDRMAQRILGMGD 307 >gi|182680251|ref|YP_001834397.1| signal recognition particle protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182636134|gb|ACB96908.1| signal recognition particle protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 551 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 80/274 (29%), Positives = 145/274 (52%), Gaps = 13/274 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ + V + V+++ + +V SV Q V+ V++++ + L +P Sbjct: 33 EVRRALLEADVSLDVVRSFVDKVRNRALGSNVVRSVTPGQMVVKIVNDVMIETLGKTVEP 92 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIW 161 + D + P I++VG+ G GKTT K++K+++D KV++A+ D R AA +QL + Sbjct: 93 IDLDAAP-PVGIMMVGLQGAGKTTTTAKIAKRLTDRFKRKVLMASLDVKRPAAQEQLAVL 151 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 + + + G +A A + A+ + DV+++DTAGR H + LMA + ++ Sbjct: 152 GKQINVATLPIIAGQTPVQIAQRAEQAARLQGFDVVLLDTAGRTHIDEALMAEMAEIKAA 211 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 +PH +L V+D+ TGQ+A+ + F G TG+++T++DG RGG + + Sbjct: 212 ------SSPHEILLVVDSLTGQDAVNLAKNFDDRVGITGIVLTRIDGDGRGGAALSMRAV 265 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ +G GE I+ LE F + I G D Sbjct: 266 TGKPIKLIGTGEKIDALEDFYPDRIANRILGMGD 299 >gi|237785768|ref|YP_002906473.1| signal recognition particle protein [Corynebacterium kroppenstedtii DSM 44385] gi|237758680|gb|ACR17930.1| signal recognition particle protein [Corynebacterium kroppenstedtii DSM 44385] Length = 538 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 87/287 (30%), Positives = 140/287 (48%), Gaps = 26/287 (9%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ + V + ++ + + +VS Q+V+ V+E + +L ++ Sbjct: 33 EIRLALLEADVSLPVVRAFIKNIKARATGAEVSEALNPAQQVVKIVNEELIGILGGETRR 92 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 + P VI++ G+ G GKTT+ GKL+ + G ML A D R A+ QL+I Sbjct: 93 LQL-AKNPPTVIMLAGLQGAGKTTLAGKLAHHLKKQGHTPMLVACDLQRPGAVQQLEIVG 151 Query: 163 DR-----------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 R T D V E+G D +A ++AQ K DV+IIDTAGRL + Sbjct: 152 QRADVPTFAPDPGTRTDTVEHEMGQSHGDPVGVATAGIEEAQRTKHDVVIIDTAGRLGID 211 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 +LM K R ++ D P VL V+D+ GQ+A+ + F TG+++TK+DG Sbjct: 212 EVLM----KQARDIR--DATNPDEVLFVIDSMIGQDAVHTADAFREGVDFTGVVLTKLDG 265 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ARGG + I P+ ++ GE ++D + F + I G D Sbjct: 266 DARGGAALSIREVTGKPILYVSTGEKLDDFDVFHPDRMANRILGMGD 312 >gi|194364928|ref|YP_002027538.1| signal recognition particle protein [Stenotrophomonas maltophilia R551-3] gi|194347732|gb|ACF50855.1| signal recognition particle protein [Stenotrophomonas maltophilia R551-3] Length = 458 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 90/294 (30%), Positives = 146/294 (49%), Gaps = 23/294 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L I + RL ++ +RE E+ L+ +D+ + V Q ++E + + Sbjct: 2 FESLTQRLSGTIERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVG 61 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V Q ++ V + + ++ + N + P +IL+ G+ G GKTT +GKL Sbjct: 62 QEVLKSLTPGQALIKVVRDELTAVMGAEASDLNLNVPA-PAIILMAGLQGAGKTTTVGKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + K VM+ + D +R AAI+QLK A++ F S A+ A A+ Sbjct: 121 AKHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLFFPSSADQKPEAIVRAAIDDAR 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 VDVL++DTAGRL + +MA I + HA P L V+DA TGQ+A Sbjct: 181 KSFVDVLLVDTAGRLAIDEAMMAEIKAL---------HAAVNPAETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F TG+++TK DG ARGG + + P+ F+GV E L+ F Sbjct: 232 TAKAFGDALPLTGVVLTKTDGDARGGAALSVRYITGKPIKFVGVSEKPEGLDVF 285 >gi|315502425|ref|YP_004081312.1| signal recognition particle protein [Micromonospora sp. L5] gi|315409044|gb|ADU07161.1| signal recognition particle protein [Micromonospora sp. L5] Length = 517 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 79/281 (28%), Positives = 138/281 (49%), Gaps = 15/281 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + + + + +VS Q+++ V+E + +L Sbjct: 28 DATAREIRMALLEADVALPVVKGFIANVKERARGAEVSQALNPAQQIVKIVNEELINILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 + + H P VI++ G+ G GKTT+ GKL++ + G + +L A D R A+ Q Sbjct: 88 GEGRRLQF-AKHPPTVIMLAGLQGSGKTTLAGKLARWLKSQGHQPLLVAADLQRPNAVGQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L++ R + G+ D +A ++ + A+ D++I+DTAGRL ++ +M Sbjct: 147 LQVLGGRAGVEVYAPAPGNGVGDPVQVARDSIEHARRAARDIVIVDTAGRLGIDTEMMQQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D P V+ V+DA GQ+A+R E F G TG++++K+DG ARGG Sbjct: 207 AAN-IR-----DAVQPDEVIFVIDAMVGQDAVRTAEAFRDGVGITGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ F GE + D + F ++ I G D Sbjct: 261 ALSVREVTGQPILFASTGEKLEDFDVFHPDRMASRILGMGD 301 >gi|225419757|ref|ZP_03762060.1| hypothetical protein CLOSTASPAR_06095 [Clostridium asparagiforme DSM 15981] gi|225041594|gb|EEG51840.1| hypothetical protein CLOSTASPAR_06095 [Clostridium asparagiforme DSM 15981] Length = 459 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 78/275 (28%), Positives = 144/275 (52%), Gaps = 12/275 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSK 101 +E++ L+ +D+ V ++ + + + +V + Q V+ V+E + K++ + Sbjct: 33 KEVKMALLEADVSFKVVKQFINSIQDQAVGAEVFGKLDAGQTVIKIVNEELVKLMGSETT 92 Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKI 160 + + VI++ G+ G GKTT KL+ ++ + G K +L A D +R AAI QL+I Sbjct: 93 EVDLKPGNEITVIMMTGLQGAGKTTTTAKLAAQLKAKKGRKPLLVACDVYRPAAIKQLQI 152 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 ++ +A A + A ++++I+DTAGRLH + +M +++ Sbjct: 153 NGEKVGVPVFAMGDKHKPVDIAKAAMEHAAKNGMNLVILDTAGRLHIDEAMM---DELVE 209 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 + +LD H ++L V+DA TGQ+A+ E F+ G G+++TK+DG RGG + I Sbjct: 210 IKDQLDVH--QTIL-VVDAMTGQDAVNVSETFNNKIGIDGVVLTKLDGDTRGGAALSIRA 266 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ ++G+GE ++DLE F ++ I G D Sbjct: 267 VTGKPILYVGMGEKLSDLEQFYPDRMASRILGMGD 301 >gi|283953925|ref|ZP_06371454.1| LOW QUALITY PROTEIN: signal recognition particle protein [Campylobacter jejuni subsp. jejuni 414] gi|283794530|gb|EFC33270.1| LOW QUALITY PROTEIN: signal recognition particle protein [Campylobacter jejuni subsp. jejuni 414] Length = 445 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 84/271 (30%), Positives = 136/271 (50%), Gaps = 15/271 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLT----KRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102 E L+ L+++D V K+ +ELLT + Q+ L + + +L K Sbjct: 30 ETLKKTLLKAD----VHHKVTKELLTLIEEDVKQNGIGQQQFLNAIKVNLENILSINGKN 85 Query: 103 FNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 + F+ +P V+L+ G+ G GKTT KL+ + KV++AA D R AA++QL+ Sbjct: 86 QGFVFASKPPTVVLMAGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQL 145 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 + E D +A EA ++A++ VDVL++DTAGRL + LM + + V Sbjct: 146 CQANGIELFFIENEKDPIRVAKEALEKAKSSMVDVLLVDTAGRLAIDDTLMNELKAVKDV 205 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 L P + V DA +GQ+ ++ F+ G +G+I++K D +GG + I Sbjct: 206 LN------PDEIFYVADAMSGQDGVKTAANFNEALGISGVILSKFDADTKGGVALGIAKQ 259 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 IP+ F+GVGE + DLE F+ + I G Sbjct: 260 IGIPLRFIGVGEKVADLEVFIPDRIVSRIMG 290 >gi|50914250|ref|YP_060222.1| signal recognition particle subunit FFH [Streptococcus pyogenes MGAS10394] gi|50903324|gb|AAT87039.1| signal recognition particle subunit FFH [Streptococcus pyogenes MGAS10394] Length = 522 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 89/312 (28%), Positives = 159/312 (50%), Gaps = 23/312 (7%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT 72 +T F S + +L++ I ++L + V +E+ L+ +D+ + V + ++ + Sbjct: 1 MTMAFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRE 60 Query: 73 KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126 + ++ +++L V+E + +L S+ D S + P +I++VG+ G GKTT Sbjct: 61 RAIGHEIIDTLDPTKQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTT 118 Query: 127 VIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAY 183 GKL+ K+ + + ++ A D +R AAIDQLK + + ++G+D +A + Sbjct: 119 FAGKLANKLIKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVR 176 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 + +QA+ D ++IDTAGRL + LM + +R +K L P+ +L V+D+ GQ Sbjct: 177 KGLEQARENHNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQ 230 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 A F+ TG+++TK+DG RGG + + P+ F G GE I D+E F Sbjct: 231 EAANVAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGERITDIETFHP 290 Query: 304 KDFSAVITGCLD 315 S+ I G D Sbjct: 291 DRMSSRILGMGD 302 >gi|28493429|ref|NP_787590.1| signal recognition particle protein [Tropheryma whipplei str. Twist] gi|28476470|gb|AAO44559.1| signal recognition particle protein [Tropheryma whipplei str. Twist] Length = 448 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 83/272 (30%), Positives = 139/272 (51%), Gaps = 31/272 (11%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSELI-- 92 D V E+ L+ SD+ +AQ V + + +++ V +++++ EL+ Sbjct: 30 DVVLSEVYKTLLDSDVSFEIAQAFVHRVRDRSMSQESLRAINPHKRVTQIVWE--ELVDL 87 Query: 93 ---HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 K + S+ F P +I++VG+ G GKT+ GKL+K + + G L A D Sbjct: 88 LGHQKTALKFSRTF-------PTIIMLVGLQGSGKTSFAGKLAKWLMERGHTAALGACDL 140 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 R AA QL+ A++ A + + G+ A+ K A+ K+ VLIIDTAGR++ +S Sbjct: 141 QRPAAASQLQAVAEQAGASVLIPKSGNALDAVKT-VVKTAREKQFSVLIIDTAGRMNADS 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 +M + ++ R+ K PH L V+D+ TGQ AL +F TG++M+K+D Sbjct: 200 DMMDQLSEIDRLAK------PHQTLLVVDSATGQEALNITRVFCQHLSVTGVVMSKLDSD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + G + V+ P+ F +GEG++DLE F Sbjct: 254 VKAGAALS--VSSLRPIIFSCIGEGVDDLEQF 283 >gi|304320471|ref|YP_003854114.1| signal recognition particle protein [Parvularcula bermudensis HTCC2503] gi|303299373|gb|ADM08972.1| signal recognition particle protein [Parvularcula bermudensis HTCC2503] Length = 496 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 85/270 (31%), Positives = 143/270 (52%), Gaps = 13/270 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA+ V ++ + ++V SV Q+V+ V +++ L D Sbjct: 38 LLEADVALPVARDFVGKVKERAIGQEVLRSVTPGQQVVKIVHDVLVDTLGGGDNAHELDL 97 Query: 108 SHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRT 165 + P IL+VG+ G GKTT KL+K++ + K V++A+ DT R AA++QLK+ ++ Sbjct: 98 TKAPPSAILMVGLQGSGKTTTSAKLAKRLKEKDRKRVLMASLDTRRPAAMEQLKVLGEQA 157 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + G A +A A + A+ D++I+DTAGRL + LMA + K I Sbjct: 158 DVPTLPIVPGQSAVQIAGRAMEAARLGGHDIVILDTAGRLSIDEELMAEV-KQIHT---- 212 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 +P L VLD+ TGQ+A++ E F A +G+++T++DG RGG + + P Sbjct: 213 -KTSPVETLLVLDSLTGQDAVQTAERFKARVPVSGVVLTRLDGDGRGGAALSMRSVTGAP 271 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F GVGE ++ L+ F + + I G D Sbjct: 272 IKFAGVGEKLDALDVFDPERMAGRILGMGD 301 >gi|306823684|ref|ZP_07457059.1| signal recognition particle protein [Bifidobacterium dentium ATCC 27679] gi|309803035|ref|ZP_07697136.1| signal recognition particle protein [Bifidobacterium dentium JCVIHMP022] gi|304553391|gb|EFM41303.1| signal recognition particle protein [Bifidobacterium dentium ATCC 27679] gi|308220502|gb|EFO76813.1| signal recognition particle protein [Bifidobacterium dentium JCVIHMP022] Length = 547 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 90/324 (27%), Positives = 153/324 (47%), Gaps = 36/324 (11%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F+S + +L + S +L DG E+ L+ +D+ + V + + + Sbjct: 4 FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGRIRERALG 63 Query: 77 KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +VS Q+V+ V+E + +L + +P N+ + P +I++ G+ G GKTT+ GK Sbjct: 64 TEVSQALNPAQQVVKIVNEELTDVLGAGMDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 122 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175 L + D+G +L A D R A+ QL++ +R E G Sbjct: 123 LGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSAGGEAVASPGLT 182 Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 D +A ++ A+ K D +IIDTAGRL + LM + R ++ D P+ +L Sbjct: 183 TGDPVKVARDSVAFARQKLYDTVIIDTAGRLGVDEELM----RQARDIR--DAVQPNEIL 236 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DA GQ+A++ + F TG++++K+DG ARGG + + P+ F GEG Sbjct: 237 FVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEG 296 Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318 + D E F ++ I LD G+ Sbjct: 297 LKDFEVFHPDRMASRI---LDMGD 317 >gi|302865880|ref|YP_003834517.1| signal recognition particle protein [Micromonospora aurantiaca ATCC 27029] gi|302568739|gb|ADL44941.1| signal recognition particle protein [Micromonospora aurantiaca ATCC 27029] Length = 517 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 79/281 (28%), Positives = 138/281 (49%), Gaps = 15/281 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + + + + +VS Q+++ V+E + +L Sbjct: 28 DATAREIRMALLEADVALPVVKGFIANVKERARGAEVSQALNPAQQIVKIVNEELINILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 + + H P VI++ G+ G GKTT+ GKL++ + G + +L A D R A+ Q Sbjct: 88 GEGRRLQF-AKHPPTVIMLAGLQGSGKTTLAGKLARWLKSQGHQPLLVAADLQRPNAVGQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L++ R + G+ D +A ++ + A+ D++I+DTAGRL ++ +M Sbjct: 147 LQVLGGRAGVEVYAPAPGNGVGDPVQVARDSIEHARRAARDIVIVDTAGRLGIDTEMMQQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D P V+ V+DA GQ+A+R E F G TG++++K+DG ARGG Sbjct: 207 AAN-IR-----DAVQPDEVIFVIDAMVGQDAVRTAEAFRDGVGITGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ F GE + D + F ++ I G D Sbjct: 261 ALSVREVTGQPILFASTGEKLEDFDVFHPDRMASRILGMGD 301 >gi|224024147|ref|ZP_03642513.1| hypothetical protein BACCOPRO_00869 [Bacteroides coprophilus DSM 18228] gi|224017369|gb|EEF75381.1| hypothetical protein BACCOPRO_00869 [Bacteroides coprophilus DSM 18228] Length = 443 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 78/265 (29%), Positives = 133/265 (50%), Gaps = 13/265 (4%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99 V E L+D+ L+ +D+ VA+ + + K ++V + + + +++H L L Sbjct: 26 NVAETLKDVRRALLDADVNYKVAKNFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTKL 85 Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAID 156 + +RP VIL+ G+ G GKTT GKL++ + K +L A D +R AAI+ Sbjct: 86 MGGDTAEIELKNRPAVILMSGLQGSGKTTFSGKLARMLKMKKNRKPLLVACDVYRPAAIE 145 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QLK+ + + +A A ++A+AK D++I+DTAGRL + +M I Sbjct: 146 QLKVLGQQVEVPVYSEPESKNPVQIALNAIQEAKAKGYDLVIVDTAGRLAIDEQMMNEIE 205 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + + P L V+DA TGQ+A+ F+ G+++TK+DG RGG + Sbjct: 206 AIKNAIN------PDETLFVVDAMTGQDAVNTAREFNERLDFNGVVLTKLDGDTRGGAAL 259 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301 I P+ F+G GE ++ ++ F Sbjct: 260 SIRTVVNKPIKFVGTGEKLDAVDQF 284 >gi|170758261|ref|YP_001787761.1| signal recognition particle protein [Clostridium botulinum A3 str. Loch Maree] gi|169405250|gb|ACA53661.1| signal recognition particle protein [Clostridium botulinum A3 str. Loch Maree] Length = 449 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 83/285 (29%), Positives = 144/285 (50%), Gaps = 13/285 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 +S + + + +RE ++ L+ +D+ V + ++ + K +V Q+V+ V+E Sbjct: 23 LSEKDIKEAMRE-VKLALLEADVNYKVVKNFIKSVTEKCMGNEVLGSLTPGQQVIKIVNE 81 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + +++ N S VI++VG+ G GKTT+ GKL+ + + +L A D + Sbjct: 82 ELTELMGSTESTLNSSTSGL-TVIMLVGLQGAGKTTMAGKLALHLRKRNKRPLLVACDVY 140 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AAI QL++ + + ++ A + A+ K +V+IIDTAGRLH + Sbjct: 141 RPAAIKQLQVVGKQIDIPVFTMGDKLNPVDISKAAIEHAKNNKNNVVIIDTAGRLHIDEE 200 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + + + P +L V+DA TGQ+A+ F+ +G+I+TK+DG Sbjct: 201 LMDELHNIKGEVN------PSEILLVVDAMTGQDAVNVANNFNDKLDISGVILTKLDGDT 254 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I P+ F+G+GE +NDLE F ++ I G D Sbjct: 255 RGGAALSIKSMTGKPIKFVGLGEKMNDLEVFYPDRMASRILGMGD 299 >gi|332521595|ref|ZP_08398048.1| signal recognition particle protein [Lacinutrix algicola 5H-3-7-4] gi|332042684|gb|EGI78884.1| signal recognition particle protein [Lacinutrix algicola 5H-3-7-4] Length = 442 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 73/211 (34%), Positives = 108/211 (51%), Gaps = 7/211 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 + S P VIL+ G+ G GKTT GKL+ + S K +L A D +R AA+DQL + D+ Sbjct: 94 NLSGTPTVILMSGLQGSGKTTFSGKLANFLKSKKTKKPLLVACDVYRPAAVDQLHVVGDQ 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 D + +D A+A A+ +V+IIDTAGRL + +M I + +K Sbjct: 154 IKVDVYSDKGNNDPVAIAQAGIAHAKQNGHNVVIIDTAGRLAVDEAMMTEISNIHTAIK- 212 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P L V+D+ TGQ+A+ + F+ V G+I+TK+DG RGG I I Sbjct: 213 -----PQETLFVVDSMTGQDAVNTAKAFNDVLNFDGVILTKLDGDTRGGAAISIKSVVNK 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + ++ F + I G D Sbjct: 268 PIKFIGTGEKMEAIDIFYPSRMADRILGMGD 298 >gi|271963361|ref|YP_003337557.1| signal recognition particle subunit FFH/SRP54 (SRP54) [Streptosporangium roseum DSM 43021] gi|270506536|gb|ACZ84814.1| signal recognition particle subunit FFH/SRP54 (SRP54) [Streptosporangium roseum DSM 43021] Length = 516 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 91/311 (29%), Positives = 153/311 (49%), Gaps = 25/311 (8%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +LT F+S K + DI D E+ L+ +D+ + V + V ++ + Sbjct: 8 RLTSVFSSLRSKGRLSEADI-------DATCREIRIALLEADVALPVVKTFVAQVKERAR 60 Query: 76 AKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +VS Q+V+ V++ + ++L ++ + + P VI++ G+ G GKTT+ GK Sbjct: 61 GVEVSQALNPAQQVVKIVNDELIEILGGETRRLRY-AKNPPTVIMLAGLQGAGKTTLAGK 119 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187 L++ + D ML A D R A+ QL++ A+R E G+ D +A ++ Sbjct: 120 LARWLRDQNHAPMLVAADLQRPNAVQQLQVMAERAGVAVYAPEPGNGVGDPIEVARQSID 179 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ ++ D++IIDTAGRL + LM IR D +P VL V+DA GQ+A+ Sbjct: 180 HARRQQHDIVIIDTAGRLGIDQELMKQAAD-IR-----DAVSPDEVLFVVDAMIGQDAVS 233 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F G G+++TK+DG ARGG + + P+ F GE + D + F + Sbjct: 234 TAQAFMEGVGFDGVVLTKLDGDARGGAALSVRHITGKPIMFASTGEKLEDFDAFHPDRMA 293 Query: 308 AVITGCLDYGE 318 + I LD G+ Sbjct: 294 SRI---LDMGD 301 >gi|269219645|ref|ZP_06163499.1| signal recognition particle protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269210887|gb|EEZ77227.1| signal recognition particle protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 520 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 115/220 (52%), Gaps = 19/220 (8%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 D S RP VI++ G+ G GKTT+ GKL + + ++ KV+L A D R A++QL++ + Sbjct: 94 DLSRRPAVIMLAGLQGAGKTTLAGKLGRWLRTERNRKVLLVASDLQRPNAVNQLQVVGGQ 153 Query: 165 TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 D E G+ D A+A +A+ DV+++DTAGRL + +M Sbjct: 154 AGVDVWAPEPGNGVGDPVAVARSGLARAEEYGYDVVVVDTAGRLGIDEEMMR-------- 205 Query: 222 LKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 + +D A P+ VL V+DA GQ+A+ F G TG++++K+DG RGG + + Sbjct: 206 -QAIDIRAAVNPNEVLFVIDAMIGQDAVATANAFQDGVGFTGVVVSKLDGDTRGGAALSV 264 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 +P+ F GE + D E F A ++ I LD G+ Sbjct: 265 RGVTGVPIMFASTGEKLTDFEQFHADRMASRI---LDMGD 301 >gi|223039520|ref|ZP_03609808.1| signal recognition particle protein [Campylobacter rectus RM3267] gi|222879316|gb|EEF14409.1| signal recognition particle protein [Campylobacter rectus RM3267] Length = 446 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 68/217 (31%), Positives = 114/217 (52%), Gaps = 9/217 (4%) Query: 99 LSKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 L+ P N F P +L+ G+ G GKTT KL+ + KV++AA D R AA+ Sbjct: 79 LTAPGNQGFVFAPVAPTTVLMAGLQGSGKTTTTIKLANYLKLRKKKVLVAACDLQRLAAV 138 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 +QL+ + + E +D +A +A +A++ DVL++DTAGRL + +LM I Sbjct: 139 EQLRQLCEANEIELFSIENETDPLNVAKQALAKAKSGLYDVLLVDTAGRLAIDEVLMKQI 198 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 + L+ PH + V DA +GQ+ ++ F+ +G++++K D ++GG Sbjct: 199 KDIKSALQ------PHEIFYVADAMSGQDGVKTASAFNDALKISGVVLSKFDSDSKGGVA 252 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 I I IP+ F+G+GE + D+E F+ + + I G Sbjct: 253 IGIAKQLNIPLRFVGIGEKVGDMESFIPERIVSRIMG 289 >gi|332366910|gb|EGJ44651.1| signal recognition particle protein [Streptococcus sanguinis SK1059] Length = 534 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 111 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 168 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QA+A D ++IDTAGRL + LM + ++ L Sbjct: 169 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 224 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F++ TG+I+TK+DG RGG + + P+ Sbjct: 225 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGIILTKIDGDTRGGAALSVRQITGKPIK 282 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 283 FTGTGEKITDIETFHPDRMSSRILGMGD 310 >gi|57866688|ref|YP_188386.1| signal recognition particle protein [Staphylococcus epidermidis RP62A] gi|242242520|ref|ZP_04796965.1| signal recognition particle protein [Staphylococcus epidermidis W23144] gi|57637346|gb|AAW54134.1| signal recognition particle protein [Staphylococcus epidermidis RP62A] gi|242234028|gb|EES36340.1| signal recognition particle protein [Staphylococcus epidermidis W23144] Length = 455 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 108/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT GKL+ M K +L AGD +R AAIDQL+ + Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPLLVAGDIYRPAAIDQLQTVGKQIDIPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + A K A+ + +D +IIDTAGRLH + LM + ++ + K Sbjct: 161 YSEGDQVSPQQIVENALKHAKEEHLDFVIIDTAGRLHIDETLMNELQEVKEISK------ 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P ++ V+DA TGQ+A+ + F +G+ +TK+DG RGG + I + P+ F+ Sbjct: 215 PDEIMLVVDAMTGQDAVNVAQSFDEQLDVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFV 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+ E ++ LE F + ++ I G D Sbjct: 275 GMSEKLDGLELFHPERMASRILGMGD 300 >gi|288957356|ref|YP_003447697.1| signal recognition particle, subunit SRP54 [Azospirillum sp. B510] gi|288909664|dbj|BAI71153.1| signal recognition particle, subunit SRP54 [Azospirillum sp. B510] Length = 461 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 86/269 (31%), Positives = 144/269 (53%), Gaps = 14/269 (5%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + V ++ V ++ + ++V SV Q+V+ V + + +ML S+ N + Sbjct: 38 LLEADVALPVVKQFVTQVKERAVGQEVLKSVTPGQQVIKIVHDNLVEMLGEGSE-INLNA 96 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P +L+VG+ G GKTT K++ ++ + KV++A+ D R AA +QLK+ ++T Sbjct: 97 AA-PVPVLMVGLQGSGKTTSTAKIALRLKTKERKKVLMASLDVRRPAAQEQLKVLGEQTG 155 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + G D A+A A + + + DV+++DTAGRL + LMA + + D Sbjct: 156 VATLPIVPGQDPVAIAKRAIETGRLEGYDVVMLDTAGRLAIDEELMAEVAAV------RD 209 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V DA TGQ+A+ F+ G TG+++T++DG ARGG + + P+ Sbjct: 210 ATKPVETLLVADAMTGQDAVTVATNFNDKVGITGIVLTRIDGDARGGAALSMRQITGKPI 269 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 LGVGE I+ LEPF + I G D Sbjct: 270 KLLGVGEKIDALEPFHPDRIAGRILGMGD 298 >gi|220912974|ref|YP_002488283.1| signal recognition particle protein [Arthrobacter chlorophenolicus A6] gi|219859852|gb|ACL40194.1| signal recognition particle protein [Arthrobacter chlorophenolicus A6] Length = 527 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 89/317 (28%), Positives = 151/317 (47%), Gaps = 29/317 (9%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L ++ RL D E+ L+ +D+ V V ++ + + Sbjct: 2 FNSLSDRLTATFKNLRGKGRLTEADVDATVREIRRALLDADVAVPVVREFTSRVRERALG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+++ V+E + ++L ++ + P +I++ G+ G GKTT+ GKL Sbjct: 62 AEVSAALNPSQQIVKIVNEELKEILGGETRRIRL-AKNGPTIIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS----------DAAAL 181 SK + G ML A D R A+ QL++ R + G+ D A+ Sbjct: 121 SKWLKSQGHSPMLVACDLQRPNAVTQLQVVGQRANVPVFAPHPGATSTELEHPAGDPVAV 180 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 A ++A+ K DV+I+DTAGRL ++ +M ++ R + P+ VL V+D+ Sbjct: 181 ARAGVEEARQKLHDVVIVDTAGRLGVDADMMEQARQIRRAI------VPNEVLFVIDSMI 234 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQ+A+ F TG++++K+DG ARGG + + PV F GEG++D E F Sbjct: 235 GQDAVNTALAFDEGVNFTGIVLSKLDGDARGGAALSVSSVTGKPVMFASTGEGLDDFELF 294 Query: 302 VAKDFSAVITGCLDYGE 318 ++ I LD G+ Sbjct: 295 HPDRMASRI---LDMGD 308 >gi|197294839|ref|YP_001799380.1| Signal recognition particle GTPase [Candidatus Phytoplasma australiense] gi|171854166|emb|CAM12160.1| Signal recognition particle GTPase [Candidatus Phytoplasma australiense] Length = 453 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 89/293 (30%), Positives = 149/293 (50%), Gaps = 26/293 (8%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS----- 89 II SR +++ + E++ LI +D+ + V EL++K+ K Q VL + Sbjct: 20 IIESRDIEN-IMEDIRLSLIEADVNIKVID-TFHELISKKSLK----QEVLKGLKPKEHI 73 Query: 90 -ELIHKMLMPLSKPFNWDF--SHRPHV--ILVVGVNGVGKTTVIGKLSKKMSDAG-LKVM 143 ++I++ L + D +PH+ ++++G+ G GKTT GKL+ + KV+ Sbjct: 74 IKIINETLTQILGSTRSDLVVQPKPHLNAMMLIGLQGSGKTTTAGKLALWLRKKNHQKVL 133 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 L A D +R A++QLK+ + D V S+ + + + AQ D ++IDTAG Sbjct: 134 LIACDIYRPGAVEQLKVIGRQIKID-VFSQGNTPVIEIVELGLQYAQKNGYDAIVIDTAG 192 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHS-VLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 RL + KM++ LK + S VL V+DA TGQ + + + FH G TG+I Sbjct: 193 RLTIDE-------KMMQELKEIKSKCDFSEVLLVIDALTGQQSAKNTQTFHQQVGATGVI 245 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +TKMD +GG + + V ++P+ F+ E I+ LEPF ++ + G D Sbjct: 246 LTKMDADTKGGASLSVRVMTELPLKFISSSESIDLLEPFNPDRMASRLLGMGD 298 >gi|332526543|ref|ZP_08402655.1| signal recognition particle protein [Rubrivivax benzoatilyticus JA2] gi|332110811|gb|EGJ10988.1| signal recognition particle protein [Rubrivivax benzoatilyticus JA2] Length = 440 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 108/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT KL+K + + KV+ + D +R AAIDQLK + A++ Sbjct: 85 PAVILMAGLQGAGKTTTTAKLAKHLIERRKKKVLTVSADVYRPAAIDQLKTVTKQAGAEW 144 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S +A A A+ DVL++DTAGRL + LMA I ++ LK Sbjct: 145 FPSAPSDKPRDIALAALDHAKRHYFDVLLVDTAGRLAIDEALMAEIRELHATLK------ 198 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F +G+++TK+DG +RGG + + P+ F Sbjct: 199 PVETLFVVDAMQGQDAINTAKAFKEALPLSGIVLTKLDGDSRGGAALSVRQVAGAPIKFA 258 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E I+ LE F A+ + + G D Sbjct: 259 GVSEKIDGLEVFDAERHAGRVLGMGD 284 >gi|17539958|ref|NP_501507.1| hypothetical protein F21D5.7 [Caenorhabditis elegans] gi|3876111|emb|CAA91040.1| C. elegans protein F21D5.7, confirmed by transcript evidence [Caenorhabditis elegans] gi|3876124|emb|CAA92301.1| C. elegans protein F21D5.7, confirmed by transcript evidence [Caenorhabditis elegans] Length = 496 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 90/300 (30%), Positives = 146/300 (48%), Gaps = 29/300 (9%) Query: 29 KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---------VEELL----TKRY 75 K G + +I+ LD ++E + LI SD+ + + +++ EE++ +RY Sbjct: 16 KLGQSTVINEGELDLMLKE-VCTALIESDVHIRLVKQLKDNVKKAINFEEIVGGANKRRY 74 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 +Q+ +++ EL+ K++ P PF R +V + VG+ G GKTT K++ Sbjct: 75 -----IQKTVFN--ELL-KLVDPGVTPFTPTKGRR-NVFMFVGLQGSGKTTTCTKMAYYY 125 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 G K L DTFR+ A DQLK A + F S D +A E ++ + + Sbjct: 126 QRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYSEIDPVKIAAEGVEKFTQEGFE 185 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 ++I+DT+GR + L +M++V + P +V+ V+DA+ GQ Q F Sbjct: 186 IIIVDTSGRHKQEASLFE---EMLQVSNAV---TPDNVVFVMDASIGQACEAQARAFSQT 239 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+D A+GGG + V K PV F+G GE I+D E F K F + G D Sbjct: 240 VDVASVIITKLDSHAKGGGALSAVAVTKSPVIFIGTGEHIDDFEIFKPKSFVQKLLGMGD 299 >gi|237749054|ref|ZP_04579534.1| signal recognition particle [Oxalobacter formigenes OXCC13] gi|229380416|gb|EEO30507.1| signal recognition particle [Oxalobacter formigenes OXCC13] Length = 454 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 80/259 (30%), Positives = 137/259 (52%), Gaps = 18/259 (6%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS---------VQRVLYDVSELIHKMLMPLSKPF 103 L+ +D+ + V + + ++ K K+V V V ++S+++ L + Sbjct: 38 LLEADVALPVVKSFIGKVREKAVGKEVMDSLSPGQALVGVVQQELSQIMGADLGEKASQL 97 Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWA 162 N+ + P +IL+ G+ GVGKTT +GKL++ + + KV+ + D +R AAI QL+ + Sbjct: 98 NF-ATQPPAIILMAGLQGVGKTTTVGKLARYLKQEKKKKVLTVSTDVYRPAAIKQLETVS 156 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 ++ DF S+ S+ +A A A+ DVLI+DTAGRL + +M I + + L Sbjct: 157 GQSGVDFYGSD-ASEPIQIAKAALDHAKRHFYDVLIVDTAGRLGIDEQMMQEISGLHKTL 215 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 +P L V+DA GQ+A+ + F+ TG+++TK+DG +RGG + + Sbjct: 216 ------SPIETLFVVDAMLGQDAINVAKSFNDALPLTGIVLTKLDGDSRGGAALSVRHIT 269 Query: 283 KIPVYFLGVGEGINDLEPF 301 PV F+GV E ++ LE F Sbjct: 270 GKPVKFVGVSEKLDGLEEF 288 >gi|190573381|ref|YP_001971226.1| putative signal recognition protein (signal recognition particle-like) [Stenotrophomonas maltophilia K279a] gi|254521454|ref|ZP_05133509.1| signal recognition particle protein [Stenotrophomonas sp. SKA14] gi|190011303|emb|CAQ44916.1| putative signal recognition protein (signal recognition particle-like) [Stenotrophomonas maltophilia K279a] gi|219719045|gb|EED37570.1| signal recognition particle protein [Stenotrophomonas sp. SKA14] Length = 458 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 90/294 (30%), Positives = 146/294 (49%), Gaps = 23/294 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L I + RL ++ +RE E+ L+ +D+ + V Q ++E + + Sbjct: 2 FESLTQRLSGTIERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVG 61 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V Q ++ V + + ++ + N + P +IL+ G+ G GKTT +GKL Sbjct: 62 QEVLKSLTPGQALIKVVRDELTAVMGAEASDLNLNVPA-PAIILMAGLQGAGKTTTVGKL 120 Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + K VM+ + D +R AAI+QLK A++ F S A+ A A+ Sbjct: 121 AKHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLFFPSSADQKPEAIVRAAIDDAR 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 VDVL++DTAGRL + +MA I + HA P L V+DA TGQ+A Sbjct: 181 KSFVDVLLVDTAGRLAIDEAMMAEIKAL---------HAAVNPAETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F TG+++TK DG ARGG + + P+ F+GV E L+ F Sbjct: 232 TAKAFGDALPLTGVVLTKTDGDARGGAALSVRYITGKPIKFVGVSEKPEGLDVF 285 >gi|15924227|ref|NP_371761.1| signal recognition particle-like protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926820|ref|NP_374353.1| hypothetical protein SA1080 [Staphylococcus aureus subsp. aureus N315] gi|148267728|ref|YP_001246671.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus JH9] gi|150393786|ref|YP_001316461.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus JH1] gi|156979558|ref|YP_001441817.1| signal recognition particle-like protein [Staphylococcus aureus subsp. aureus Mu3] gi|253315595|ref|ZP_04838808.1| signal recognition particle-like protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006024|ref|ZP_05144625.2| signal recognition particle-like protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795707|ref|ZP_05644686.1| signal recognition particle protein [Staphylococcus aureus A9781] gi|258415931|ref|ZP_05682201.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus aureus A9763] gi|258419678|ref|ZP_05682645.1| signal recognition particle protein [Staphylococcus aureus A9719] gi|258434849|ref|ZP_05688923.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus aureus A9299] gi|258444575|ref|ZP_05692904.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus aureus A8115] gi|258447592|ref|ZP_05695736.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus aureus A6300] gi|258449434|ref|ZP_05697537.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus aureus A6224] gi|258454813|ref|ZP_05702777.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus aureus A5937] gi|269202853|ref|YP_003282122.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus ED98] gi|282892724|ref|ZP_06300959.1| signal recognition particle protein [Staphylococcus aureus A8117] gi|282927578|ref|ZP_06335194.1| signal recognition particle protein [Staphylococcus aureus A10102] gi|295407176|ref|ZP_06816977.1| signal recognition particle protein [Staphylococcus aureus A8819] gi|296274794|ref|ZP_06857301.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus MR1] gi|297245937|ref|ZP_06929796.1| signal recognition particle protein [Staphylococcus aureus A8796] gi|13701037|dbj|BAB42332.1| ffh [Staphylococcus aureus subsp. aureus N315] gi|14247007|dbj|BAB57399.1| signal recognition particle homolog [Staphylococcus aureus subsp. aureus Mu50] gi|147740797|gb|ABQ49095.1| signal recognition particle subunit FFH/SRP54 (srp54) [Staphylococcus aureus subsp. aureus JH9] gi|149946238|gb|ABR52174.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus JH1] gi|156721693|dbj|BAF78110.1| signal recognition particle homolog [Staphylococcus aureus subsp. aureus Mu3] gi|257789679|gb|EEV28019.1| signal recognition particle protein [Staphylococcus aureus A9781] gi|257839267|gb|EEV63741.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus aureus A9763] gi|257844263|gb|EEV68645.1| signal recognition particle protein [Staphylococcus aureus A9719] gi|257849210|gb|EEV73192.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus aureus A9299] gi|257850068|gb|EEV74021.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus aureus A8115] gi|257853783|gb|EEV76742.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus aureus A6300] gi|257857422|gb|EEV80320.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus aureus A6224] gi|257863196|gb|EEV85960.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus aureus A5937] gi|262075143|gb|ACY11116.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus ED98] gi|282590581|gb|EFB95658.1| signal recognition particle protein [Staphylococcus aureus A10102] gi|282764721|gb|EFC04846.1| signal recognition particle protein [Staphylococcus aureus A8117] gi|285816919|gb|ADC37406.1| Signal recognition particle, subunit Ffh SRP54 [Staphylococcus aureus 04-02981] gi|294968029|gb|EFG44057.1| signal recognition particle protein [Staphylococcus aureus A8819] gi|297177101|gb|EFH36355.1| signal recognition particle protein [Staphylococcus aureus A8796] gi|312829631|emb|CBX34473.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|329727576|gb|EGG64032.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus 21172] Length = 455 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 79/269 (29%), Positives = 134/269 (49%), Gaps = 13/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L +D+ V ++ ++ + + DV Q+V+ V + + K++ + N Sbjct: 39 LFEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+++VG+ G GKTT GKL+ M K ML A D +R AAI+QL+ + Sbjct: 98 NKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQID 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + A K A+ + +D +IIDTAGRLH + LM + ++ + K Sbjct: 158 IPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKEIAK--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P+ ++ V+D+ TGQ+A+ E F TG+ +TK+DG RGG + I + P+ Sbjct: 215 ---PNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+ E ++ LE F + ++ I G D Sbjct: 272 KFVGMSEKLDGLELFHPERMASRILGMGD 300 >gi|124514042|ref|XP_001350377.1| signal recognition particle receptor alpha subunit, putative [Plasmodium falciparum 3D7] gi|23615794|emb|CAD52786.1| signal recognition particle receptor alpha subunit, putative [Plasmodium falciparum 3D7] Length = 576 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 89/283 (31%), Positives = 150/283 (53%), Gaps = 39/283 (13%) Query: 48 ELEDLLIRSDIGVAVAQKIV----EELLTKR---YAKDV--SVQRVLYDVSELIHKMLMP 98 E+++ L+ ++ + + ++ E L+ K+ +A +V +V VL SE I +L+P Sbjct: 294 EIKNKLLSKNVAIGICDTLIDRMKENLIGKKKTLFALNVKKTVSNVL---SETIQSILIP 350 Query: 99 ------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFR 151 L + + I+ +GVNGVGK+T + K+ + + G LK+M+AA DTFR Sbjct: 351 KDSVDVLRSAIESKSMGKLYSIVFLGVNGVGKSTNLAKVCYYLKNKGNLKIMIAACDTFR 410 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 + A++QL+I A+ + G DA+A+A EA A+ + DV++IDTAGR+ +N L Sbjct: 411 AGAVEQLRIHANCLNVFLYEKGYGKDASAIAKEAILYAKKENYDVILIDTAGRMQDNEPL 470 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-----AVAGTT------G 260 M +GK+I + P +L V +A G +A+ Q++ F+ A +T G Sbjct: 471 MRSLGKLILY------NNPDLILFVGEALVGNDAIDQLKKFNQALTDATCNSTNKRTIDG 524 Query: 261 LIMTKMDGTAR--GGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +I+TK D G L + +T K P+ F+GVG+ L+ F Sbjct: 525 IILTKFDTVDDKVGTALSMVYLTGK-PIVFVGVGQKYTHLKKF 566 >gi|319780681|ref|YP_004140157.1| signal recognition particle protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166569|gb|ADV10107.1| signal recognition particle protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 536 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 112/206 (54%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT K++K++S+ KV++A+ DT R AA +QL+ ++ Sbjct: 100 PVVIMMVGLQGSGKTTTSAKIAKRLSERQNKKVLMASLDTRRPAAQEQLRQLGEQVKVAT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ DV+I+DTAGR H + LM + + +V + Sbjct: 160 LPIIDGQSPVDIARRAVQAAKLGGHDVVILDTAGRTHIDEPLMVEMADIKKV------SS 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH +L V D+ TGQ+A+ + F G TGL++T+MDG RGG + + P+ + Sbjct: 214 PHEILLVADSLTGQDAVNLAKSFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE ++ LE F K + I G D Sbjct: 274 GTGEKMDGLEEFHPKRIADRILGMGD 299 >gi|315131030|gb|EFT87014.1| hypothetical protein CGSSa03_05784 [Staphylococcus aureus subsp. aureus CGS03] Length = 455 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 79/269 (29%), Positives = 134/269 (49%), Gaps = 13/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L +D+ V ++ ++ + + DV Q+V+ V + + K++ + N Sbjct: 39 LFEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+++VG+ G GKTT GKL+ M K ML A D +R AAI+QL+ + Sbjct: 98 NKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQID 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + A K A+ + +D +IIDTAGRLH + LM + ++ + K Sbjct: 158 IPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKEIAK--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P+ ++ V+D+ TGQ+A+ E F TG+ +TK+DG RGG + I + P+ Sbjct: 215 ---PNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+ E ++ LE F + ++ I G D Sbjct: 272 KFVGMSEKLDGLELFHPERMASRILGMGD 300 >gi|255003289|ref|ZP_05278253.1| signal recognition particle protein (ffh) [Anaplasma marginale str. Puerto Rico] Length = 451 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 91/290 (31%), Positives = 156/290 (53%), Gaps = 15/290 (5%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 L KG AS KL G IS + D V E++ L+ +D+ + V ++ + ++ +K Sbjct: 5 LAKGIASAVQKL--GGRREISDKDFD-LVLEDVTQALLDADVNLMVVEQFIGDVKSKIVG 61 Query: 77 KDVSVQRVLYD--VSELIHKMLMPL--SKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKL 131 +V V+ VL + + +L+ + L+ + ++ D S + P I++VG+ GVGKTT K+ Sbjct: 62 GEV-VKGVLPEQMIIKLMEECLIEVLGNEKSELDLSGKAPVAIMMVGLQGVGKTTNTVKV 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K+ + KV++A+ D +R AA +QL + A D + G +A A K+A+ Sbjct: 121 AFKLKKSEKKVLVASLDVYRPAAQEQLGVLAQGVGVDSLPIVEGELPLDIAKRAMKEAKR 180 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 DV+I+DTAGRLH + + IG++ + K + +P+ + V+D GQ+A+ V Sbjct: 181 GGYDVVIVDTAGRLHIDQEM---IGELQLIKKEV---SPNETILVVDCMMGQDAVEVVRG 234 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 FH TG I T+ DG +RGG ++ + + P+ F+ GE DL+ F Sbjct: 235 FHDKLNLTGTIFTRADGDSRGGAILSMKMVSGCPIKFMSTGEKPEDLDDF 284 >gi|156100321|ref|XP_001615888.1| signal recognition particle 54 kDa protein [Plasmodium vivax SaI-1] gi|148804762|gb|EDL46161.1| signal recognition particle 54 kDa protein, putative [Plasmodium vivax] Length = 500 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 86/284 (30%), Positives = 136/284 (47%), Gaps = 19/284 (6%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVL--YDVSEL 91 D + E L+++ LI +DI ++ + I + K K++ + +R++ Y V EL Sbjct: 25 DSAIEECLKEVMRALILADINISYLKDIKSNI-KKNIEKNIDLYGNNKKRLVQQYVVEEL 83 Query: 92 IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 I+ L+ K +VIL VG+ G GKTT K + G K L DTFR Sbjct: 84 IN--LLEGKKESYVPKKGSRNVILFVGLQGSGKTTTCTKFAHYYQKKGFKTALVCADTFR 141 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 + A DQLK A + F S D +A + +K D++I+D++GR S L Sbjct: 142 AGAFDQLKQNAAKVKIPFYGSYSEVDPVKIASDGVNAFLKEKYDLIIVDSSGRHKQESEL 201 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 + ++ ++ P ++ V+D+ GQ+ Q F +I+TK+DG A+ Sbjct: 202 FEEMKQVESSIR------PEEIVFVIDSHIGQSCHDQAMAFKNSVTLGSIIITKIDGHAK 255 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 GGG + V + P+ F+G GE IND E F AK F + + G D Sbjct: 256 GGGALSAVASTGCPITFIGTGEHINDFENFEAKSFVSRLLGLGD 299 >gi|307943452|ref|ZP_07658796.1| signal recognition particle protein [Roseibium sp. TrichSKD4] gi|307773082|gb|EFO32299.1| signal recognition particle protein [Roseibium sp. TrichSKD4] Length = 519 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 92/306 (30%), Positives = 157/306 (51%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL--DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75 F S S +L GI D ++ R ++ V E L ++ LI +D+ + V + +++ + Sbjct: 2 FESLSDRL-SGIFDKLTGRGALSENDVNEALREIRRALIEADVALPVVRSFTDKVKHRAV 60 Query: 76 AKDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +V SV Q V+ V + + +ML + + + + P I++VG+ G GKTT K Sbjct: 61 GAEVVKSVTPGQMVVKIVHDQLIEMLGVDGQAIDLN-APAPVAIMMVGLQGSGKTTTTSK 119 Query: 131 LSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 ++++++ KV++A+ DT R AA +QLK+ ++ D + G +A A A Sbjct: 120 IARRLTQRDKRKVLMASLDTRRPAAQEQLKVLGEQNEIDTLPIIEGQGPVEIANRAMSAA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DV+++DTAGR+H + LM + ++ + + PH +L V DA TGQ+A+ Sbjct: 180 KLGGYDVVMLDTAGRIHIDEPLMVEMAEVKKAAQ------PHEILLVADALTGQDAVNLA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F G TG+ +T+MDG RGG + + PV +G GE + LE F K + Sbjct: 234 KSFDERVGITGIALTRMDGDGRGGAALSMQAVTGKPVKLIGTGEKSDALEDFYPKRIADR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|15828813|ref|NP_326173.1| signal recognition particle protein [Mycoplasma pulmonis UAB CTIP] gi|14089756|emb|CAC13515.1| SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG) [Mycoplasma pulmonis] Length = 449 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 90/279 (32%), Positives = 137/279 (49%), Gaps = 32/279 (11%) Query: 57 DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM-------------LMPL--SK 101 DI A+ + V L+ K++ KDV ++ L SELI K+ L L K Sbjct: 33 DIKFALLEADVNLLVVKKFIKDVK-EKALE--SELIGKLNPSQTMIKIVKDELTTLLGGK 89 Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLS-----KKMSDAGLKVMLAAGDTFRSAAID 156 +PHVI+ VG+ G GKTT + K++ KK + L L A D +R AAID Sbjct: 90 AQEIKIVKKPHVIMFVGLQGGGKTTTVAKVAYYLRKKKFVENPL---LVACDVYRPAAID 146 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL+ A + +++ A +A QA +K D++IIDTAGRL + LM + Sbjct: 147 QLQTLAKQIQIPVYANDVSVSPIKTARQALDQAYKEKNDLVIIDTAGRLSIDEKLMEELL 206 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + + +K P ++ V DA +GQ+ + + FH + I+TK+D ARGG + Sbjct: 207 LIKKEIK------PDEIIFVADAMSGQDIINVAKTFHEKLSLSSSIITKLDSDARGGAAL 260 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I IP+ F+G GE I++++ F A + I G D Sbjct: 261 SIREILNIPIKFIGTGEKISNIDIFHADRMAERILGMGD 299 >gi|291437016|ref|ZP_06576406.1| signal recognition particle protein [Streptomyces ghanaensis ATCC 14672] gi|291339911|gb|EFE66867.1| signal recognition particle protein [Streptomyces ghanaensis ATCC 14672] Length = 537 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 84/284 (29%), Positives = 142/284 (50%), Gaps = 18/284 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + ++ + + +VS Q+VL V+E + +L Sbjct: 49 DATAREIRIALLEADVALPVVRTFIKNVKERALGAEVSKALNPAQQVLKIVNEELVTILG 108 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + P VI++ G+ G GKTT+ GKL + + + G +L A D R A++Q Sbjct: 109 GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGRWLKEQGHSPVLVAADLQRPNAVNQ 167 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R E G+ D +A ++ A+AK D++I+DTAGRL + +M Sbjct: 168 LSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIDFARAKVHDIVIVDTAGRLGIDQEMMQQ 227 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P +L V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 228 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 281 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + I P+ F GE ++D + F ++ I LD G+ Sbjct: 282 ALSIRQVTGKPIMFASNGEKLDDFDAFHPDRMASRI---LDMGD 322 >gi|319401472|gb|EFV89682.1| signal recognition particle protein [Staphylococcus epidermidis FRI909] Length = 455 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 108/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT GKL+ M K +L AGD +R AAIDQL+ + Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPLLVAGDIYRPAAIDQLQTVGKQIDIPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + A K A+ + +D +IIDTAGRLH + LM + ++ + K Sbjct: 161 YSEGDQVPPQQIVENALKHAKEEHLDFVIIDTAGRLHIDETLMNELQEVKEISK------ 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P ++ V+DA TGQ+A+ + F +G+ +TK+DG RGG + I + P+ F+ Sbjct: 215 PDEIMLVVDAMTGQDAVNVAQSFDEQLDVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFV 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+ E ++ LE F + ++ I G D Sbjct: 275 GMSEKLDGLELFHPERMASRILGMGD 300 >gi|260467296|ref|ZP_05813470.1| signal recognition particle protein [Mesorhizobium opportunistum WSM2075] gi|259028900|gb|EEW30202.1| signal recognition particle protein [Mesorhizobium opportunistum WSM2075] Length = 535 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 113/206 (54%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT K++K++++ KV++A+ DT R AA +QL+ ++ Sbjct: 100 PVVVMMVGLQGSGKTTTSAKIAKRLTERQNKKVLMASLDTRRPAAQEQLRQLGEQVKVAT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G + +A A + A+ DV+I+DTAGR H + LM + + +V + Sbjct: 160 LPVIAGQNPVDIAKRAVQAAKLGGHDVVILDTAGRTHIDEPLMVEMADIKKV------SS 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH +L V D+ TGQ+A+ + F G TGL++T+MDG RGG + + P+ + Sbjct: 214 PHEILLVADSLTGQDAVNLAKSFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE ++ LE F K + I G D Sbjct: 274 GTGEKMDGLEEFHPKRIADRILGMGD 299 >gi|46446288|ref|YP_007653.1| signal recognition particle chain ffh [Candidatus Protochlamydia amoebophila UWE25] gi|46399929|emb|CAF23378.1| probable signal recognition particle chain ffh [Candidatus Protochlamydia amoebophila UWE25] Length = 454 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 93/297 (31%), Positives = 144/297 (48%), Gaps = 31/297 (10%) Query: 29 KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV 88 +E I+D ++ RL L+ +D+ V + +V KR + ++V+ V Sbjct: 36 EENISDAVNEVRL----------ALLEADVNYGVTKTLV-----KRLKEQSLGEQVIKSV 80 Query: 89 S------ELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140 + +++H L+ L + +P VI++ G+ G GKTT KL+K + GL Sbjct: 81 TPGQQFIKIVHDELVALMGGEEATLHLEGKPAVIMLCGLQGAGKTTHCAKLAKYLKKKGL 140 Query: 141 --KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 +LAA D R AA++QLK + D +A +A K AQ + D+LI Sbjct: 141 CKNPLLAACDLQRPAAVEQLKTLGQQIHVPVFTIVGEKDPVRIAKDALKHAQEAQHDLLI 200 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +DTAGRLH ++ LM + K+ VL P +L V +ATTGQ+A+ F Sbjct: 201 VDTAGRLHVDNELMTQLEKIKEVLN------PGEILFVANATTGQDAVNVATEFSKRIEV 254 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G I+T +DG ARGG I I P+ F G+GE ++DL+ F + I G D Sbjct: 255 SGTILTMLDGNARGGAAISIREVTGKPLKFEGIGEKVDDLQLFNPNSMADRILGMGD 311 >gi|254472514|ref|ZP_05085914.1| signal recognition particle protein [Pseudovibrio sp. JE062] gi|211958797|gb|EEA93997.1| signal recognition particle protein [Pseudovibrio sp. JE062] Length = 518 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 82/274 (29%), Positives = 139/274 (50%), Gaps = 13/274 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKP 102 E+ LI +D+ + + + +++ + +V Q V+ V + + +ML S P Sbjct: 33 EVRRALIEADVALPIVRSFTDKVKHRAVGAEVVKSIKPGQMVVKIVHDQLVEMLGEESHP 92 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIW 161 + + + P I++VG+ G GKTT GK++++++ KV++A+ DT R AA +QLK+ Sbjct: 93 IDLN-APAPVCIMMVGLQGAGKTTATGKIARRLTQRDKRKVLMASLDTRRPAAQEQLKVL 151 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 ++ D + G +A A A+ DV+++DTAGR H + LM + + I+ Sbjct: 152 GEQNEIDTLPIIEGQQPVDIAKRALNAAKLGGYDVVMLDTAGRGHIDEPLMVEM-EQIKA 210 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 PH VL V DA TGQ+A+ + F TG+++T+MDG RGG + + Sbjct: 211 ASN-----PHEVLLVADALTGQDAVNLAKSFDERCSITGIMLTRMDGDGRGGAALSMRAV 265 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ +G GE + LE F K + I G D Sbjct: 266 TGKPIKLIGTGEKSDALEDFHPKRIADRILGMGD 299 >gi|307565825|ref|ZP_07628286.1| signal recognition particle protein [Prevotella amnii CRIS 21A-A] gi|307345449|gb|EFN90825.1| signal recognition particle protein [Prevotella amnii CRIS 21A-A] Length = 456 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 89/281 (31%), Positives = 145/281 (51%), Gaps = 17/281 (6%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99 V E L+D+ L+ +D+ VA+ + + K +V + + + +L+H L L Sbjct: 26 NVAETLKDVRRALLDADVNYKVAKSFTDRVKAKALGMNVLTAVKPGQLMVKLVHDELALL 85 Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAID 156 + +RP +IL+ G+ G GKTT GKL+K + K +L A D +R AAID Sbjct: 86 MGGEAVGMSLENRPAIILMSGLQGSGKTTFAGKLAKMLKTKNHKQPLLVACDVYRPAAID 145 Query: 157 QLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 QLK+ ++ V SE G+ + +A A +A++K DV+IIDTAGRL + +M I Sbjct: 146 QLKVVGEQVDVP-VYSEAGNKNVNEIATHAIAEAKSKGNDVIIIDTAGRLAVDEDMMNEI 204 Query: 216 GKMIRVLKRLDPH-APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + L H P L V+D+ TGQ+A+ + F++ G+++TK+DG RGG Sbjct: 205 -------ESLKNHITPDETLFVVDSMTGQDAVNTAKEFNSRLDFDGVVLTKLDGDTRGGA 257 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+G GE ++ ++ F + + I G D Sbjct: 258 ALSIRTVVTKPIKFIGTGEKMDAIDVFHPERMADRILGMGD 298 >gi|296117621|ref|ZP_06836205.1| signal recognition particle protein [Corynebacterium ammoniagenes DSM 20306] gi|295969352|gb|EFG82593.1| signal recognition particle protein [Corynebacterium ammoniagenes DSM 20306] Length = 541 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 87/283 (30%), Positives = 141/283 (49%), Gaps = 26/283 (9%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + V + ++ + + +VS Q+V+ V+E + +L ++ + Sbjct: 38 LLEADVSLTVVRGFIKRVKERAVGAEVSEALNPAQQVIKIVNEELVTILGGETRRLQF-A 96 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164 + P VI++ G+ G GKTT+ GKL+K +S G ML A D R A+ QL+I +R Sbjct: 97 KNPPTVIMLAGLQGAGKTTLAGKLAKHLSGQGHTPMLVACDLQRPGAVQQLEIVGERAGV 156 Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 TS D E+G+ D +A ++A+ + DV+IIDTAGRL + LM Sbjct: 157 PTFAPDAGTSVDAHDHEMGTSTGDPVQVAQAGIEEAKRAQHDVVIIDTAGRLGIDETLMT 216 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + IR D P VL V+D+ GQ+A+ E F TG+++TK+DG ARGG Sbjct: 217 Q-ARNIR-----DAVNPDEVLFVIDSMIGQDAVTTAEAFRDGVDFTGVVLTKLDGDARGG 270 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316 + I P+ F GE + + + F + ++ I G D Sbjct: 271 AALSIREVTGKPIMFASTGEKLENFDVFHPERMASRILGMGDM 313 >gi|52080200|ref|YP_078991.1| signal recognition particle-like (SRP) component [Bacillus licheniformis ATCC 14580] gi|52785577|ref|YP_091406.1| hypothetical protein BLi01818 [Bacillus licheniformis ATCC 14580] gi|52003411|gb|AAU23353.1| signal recognition particle-like (SRP) component [Bacillus licheniformis ATCC 14580] gi|52348079|gb|AAU40713.1| Ffh [Bacillus licheniformis ATCC 14580] Length = 446 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + +L A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTSTGKLANLLRKKHNRNPLLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A ++A+ D ++IDTAGRLH + LM + ++ + Sbjct: 159 PVFSLGDKVSPVEIAKQAIEKAKEDHHDYVLIDTAGRLHIDEELMDELEQVKETAQ---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+D+ TGQ+A+ + F+ G TG+I+TK+DG RGG + I P+ Sbjct: 215 --PEEIFLVVDSMTGQDAVNVAKSFNEQLGVTGVILTKLDGDTRGGAALSIRAVTNTPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ LEPF + ++ I G D Sbjct: 273 FAGMGEKLDALEPFHPERMASRILGMGD 300 >gi|332530704|ref|ZP_08406635.1| signal recognition particle protein [Hylemonella gracilis ATCC 19624] gi|332039872|gb|EGI76267.1| signal recognition particle protein [Hylemonella gracilis ATCC 19624] Length = 467 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 114/219 (52%), Gaps = 8/219 (3%) Query: 99 LSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156 L P + + + +P VIL+ G+ G GKTT KL++ + + KV+ +GD +R AAI+ Sbjct: 95 LKGPADINLAAQPPAVILMAGLQGAGKTTTTAKLARHLITKRKKKVLTVSGDVYRPAAIE 154 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QLK + A++ S + +A A A+ DVL++DTAGRL + LM I Sbjct: 155 QLKTVTAQAGAEWFPSTPDQKPSDIARAALDYAKKHYFDVLLVDTAGRLAIDEALMKEIQ 214 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + +L P L V+DA GQ+A+ + F TG+++TKMDG +RGG + Sbjct: 215 DLHAILD------PVETLFVVDAMQGQDAVNTAKAFKEALPLTGIVLTKMDGDSRGGAAL 268 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + P+ F GV E I+ LE F A+ + + G D Sbjct: 269 SVRAVTGAPIKFAGVSEKIDGLEVFDAERHAGRVLGMGD 307 >gi|325687450|gb|EGD29471.1| signal recognition particle protein [Streptococcus sanguinis SK72] Length = 524 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLTNKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QA+A D ++IDTAGRL + LM + ++ L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F++ TG+I+TK+DG RGG + + P+ Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|251772981|gb|EES53538.1| signal recognition particle protein [Leptospirillum ferrodiazotrophum] Length = 444 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 86/282 (30%), Positives = 141/282 (50%), Gaps = 27/282 (9%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-----VSVQRVLYDV-SELIHKM----- 95 EE+ L+ +D+ + V + E L + + Q+V+ +V E++H + Sbjct: 32 EEIRVALLEADVSLDVVKSFTEGLSARLVGQAQKSGLTGAQQVIAEVYQEMVHILGDHRA 91 Query: 96 -LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 + SKP P +I ++G+ G GKTT KL+ +V+L A D R AA Sbjct: 92 TIALASKP--------PTIIFMMGLQGSGKTTTAAKLALHFKGQNRRVLLVASDLARLAA 143 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV-DVLIIDTAGRLHNNSILMA 213 IDQLK+ ++ + G+ + Y K+ + + +V+I+DTAGRL +S LM Sbjct: 144 IDQLKVLGEQIGVPVLLPPDGTTRPSDLYPLVKRRVIEGMYEVVIVDTAGRLTVDSALMG 203 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 ++ L+RL ++P L V+DA GQ A+ + F A G G++ TK+DG RGG Sbjct: 204 ----ELKELRRL--YSPKECLLVVDAMQGQEAVGVAKTFDAEIGVDGVVFTKLDGDTRGG 257 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ++ I K P+ F+G+GE ++ LE F ++ I G D Sbjct: 258 AVLSIRQVLKKPIKFVGMGEKLDRLEAFFPDRMASRIIGMGD 299 >gi|310286866|ref|YP_003938124.1| Signal recognition particle, subunit FFH/SRP54 [Bifidobacterium bifidum S17] gi|309250802|gb|ADO52550.1| Signal recognition particle, subunit FFH/SRP54 [Bifidobacterium bifidum S17] Length = 548 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 89/324 (27%), Positives = 153/324 (47%), Gaps = 36/324 (11%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F+S + +L + S +L DG E+ L+ +D+ + V + + + Sbjct: 4 FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTARIRERALG 63 Query: 77 KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +VS Q+V+ V+E + +L + +P N+ + P +I++ G+ G GKTT+ GK Sbjct: 64 TEVSEALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 122 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175 L + D+G +L A D R A+ QL++ + E G Sbjct: 123 LGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGEHAGVPVYAPEKGVQSDGGDSVSAPGET 182 Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 D +A ++ A+ K D +IIDTAGRL + +LM + R ++ D P+ +L Sbjct: 183 SGDPVKVARDSIALAKQKLYDTVIIDTAGRLGVDEVLM----QQARDIR--DAVNPNEIL 236 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DA GQ+A++ + F TG++++K+DG ARGG + + P+ F GEG Sbjct: 237 FVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEG 296 Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318 + D E F ++ I LD G+ Sbjct: 297 LKDFEVFHPDRMASRI---LDMGD 317 >gi|49483400|ref|YP_040624.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus MRSA252] gi|258423922|ref|ZP_05686807.1| signal recognition particle protein [Staphylococcus aureus A9635] gi|282903791|ref|ZP_06311679.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus C160] gi|282905555|ref|ZP_06313410.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282908530|ref|ZP_06316360.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910809|ref|ZP_06318612.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282916487|ref|ZP_06324249.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus D139] gi|282918935|ref|ZP_06326670.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus C427] gi|283770299|ref|ZP_06343191.1| signal recognition particle subunit SRP54 [Staphylococcus aureus subsp. aureus H19] gi|283957979|ref|ZP_06375430.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus A017934/97] gi|295427723|ref|ZP_06820355.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591318|ref|ZP_06949956.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus MN8] gi|49241529|emb|CAG40215.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257845951|gb|EEV69980.1| signal recognition particle protein [Staphylococcus aureus A9635] gi|282316745|gb|EFB47119.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus C427] gi|282319927|gb|EFB50275.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus D139] gi|282325414|gb|EFB55723.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282327592|gb|EFB57875.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330847|gb|EFB60361.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282595409|gb|EFC00373.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus C160] gi|283460446|gb|EFC07536.1| signal recognition particle subunit SRP54 [Staphylococcus aureus subsp. aureus H19] gi|283470450|emb|CAQ49661.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus ST398] gi|283790128|gb|EFC28945.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus A017934/97] gi|295128081|gb|EFG57715.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576204|gb|EFH94920.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus MN8] gi|298694530|gb|ADI97752.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus ED133] gi|302332841|gb|ADL23034.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus JKD6159] gi|312438385|gb|ADQ77456.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus TCH60] gi|315194125|gb|EFU24518.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus CGS00] gi|323441012|gb|EGA98719.1| signal recognition particle protein [Staphylococcus aureus O11] gi|323442329|gb|EGA99959.1| signal recognition particle protein [Staphylococcus aureus O46] Length = 455 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 79/269 (29%), Positives = 135/269 (50%), Gaps = 13/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V ++ ++ + + DV Q+V+ V + + K++ + N Sbjct: 39 LLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+++VG+ G GKTT GKL+ M K ML A D +R AAI+QL+ + Sbjct: 98 NKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQID 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + A K A+ + +D +IIDTAGRLH + LM + ++ + K Sbjct: 158 IPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAK--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P+ ++ V+D+ TGQ+A+ E F TG+ +TK+DG RGG + I + P+ Sbjct: 215 ---PNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+ E ++ LE F + ++ I G D Sbjct: 272 KFVGMSEKLDGLELFHPERMASRILGMGD 300 >gi|322378714|ref|ZP_08053145.1| signal recognition particle protein [Helicobacter suis HS1] gi|321148857|gb|EFX43326.1| signal recognition particle protein [Helicobacter suis HS1] Length = 444 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 82/271 (30%), Positives = 143/271 (52%), Gaps = 11/271 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMP-LSKPFN 104 EEL+ L+R+D+ V +++V+ + K AK + Q+ + E L+ + +P S F Sbjct: 30 EELKKALLRNDVHHKVVKELVKNIEAKTKAKGIGKQQFFDALQESLLEILSVPGCSSGFV 89 Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 + + P ++L+ G+ G GKTT KL+ + KV+L A D R AA++QL++ + Sbjct: 90 YAPTP-PTIVLMCGLQGGGKTTTCAKLAHYLKTRHKKVLLVACDLERLAAVEQLQVLGTQ 148 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + E GS +A A ++A+ + DV+I+D+AGRL + LM + + ++K Sbjct: 149 IGVEVFYQE-GS-ILEIAKGALERAKEGQFDVVIVDSAGRLAIDQNLMQELKALKDLIK- 205 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P V DA +GQ+ +R FH G +G++++K D ++GG + I +I Sbjct: 206 -----PSETFYVADALSGQDGVRSAGTFHTEIGLSGVVLSKFDSDSKGGVALGIAHQLQI 260 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE I DL+ F+ + + G D Sbjct: 261 PLRFIGHGEKIPDLDIFMPDRIANRLMGAGD 291 >gi|146298009|ref|YP_001192600.1| signal recognition particle protein [Flavobacterium johnsoniae UW101] gi|146152427|gb|ABQ03281.1| signal recognition particle subunit FFH/SRP54 (srp54) [Flavobacterium johnsoniae UW101] Length = 450 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 110/211 (52%), Gaps = 7/211 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 + S P VIL+ G+ G GKTT GKL+ + + K +L A D +R AAI+QL + D+ Sbjct: 94 NLSGNPSVILMSGLQGSGKTTFSGKLANFLKTKKNKKPLLVACDIYRPAAINQLHVVGDQ 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + + +A A K A+A +V+I+DTAGRL + +M I ++ + ++ Sbjct: 154 IGVEVYSEPENKNPVEIAQNAIKHAKANGFNVVIVDTAGRLAVDQEMMDEIARVHKAIQ- 212 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P L V+D+ TGQ+A+ + F+ + G+I+TK+DG RGG I I Sbjct: 213 -----PQETLFVVDSMTGQDAVNTAKAFNDILNFDGVILTKLDGDTRGGAAISIKSVVNK 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + ++ F + I G D Sbjct: 268 PIKFVGTGEKMEAIDVFYPDRMAERILGMGD 298 >gi|311068118|ref|YP_003973041.1| signal recognition particle protein [Bacillus atrophaeus 1942] gi|310868635|gb|ADP32110.1| signal recognition particle protein [Bacillus atrophaeus 1942] Length = 446 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K +L A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A ++A+ + D +I+DTAGRLH + LM + + + Sbjct: 159 PVFSLGDQVSPVEIAKQAIEKAKEEHYDYVILDTAGRLHIDHELMDELANVKEIAN---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+D+ TGQ+A+ + F+ G TG+++TK+DG RGG + I P+ Sbjct: 215 --PEEIFLVVDSMTGQDAVNVAKSFNEQLGLTGVVLTKLDGDTRGGAALSIRAVTNTPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ LE F + ++ I G D Sbjct: 273 FAGLGEKLDALEAFHPERMASRILGMGD 300 >gi|332667956|ref|YP_004450744.1| signal recognition particle protein [Haliscomenobacter hydrossis DSM 1100] gi|332336770|gb|AEE53871.1| signal recognition particle protein [Haliscomenobacter hydrossis DSM 1100] Length = 450 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 83/278 (29%), Positives = 136/278 (48%), Gaps = 19/278 (6%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPL----- 99 +E+ L+ +D+ +A++ + + K D VL VS +L+ K++M Sbjct: 32 KEIRRALVDADVSYKIAKEFTDRVKEKALGSD----NVLKAVSPGQLMIKIVMDELTDLM 87 Query: 100 -SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAIDQ 157 + + + +P VIL+ G+ G GKTT GKL+ + K +L A D +R AA+DQ Sbjct: 88 GGQAAGLNLAGKPTVILIAGLQGSGKTTFSGKLAHWLKTQKKKSPLLVACDVYRPAAMDQ 147 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L + A++ + +A +A + A K DV+I+DTAGRL + +MA I Sbjct: 148 LTVLAEQVGVPVYKEPESKNPVQIALKAIQYAIEHKCDVVIVDTAGRLAIDEEMMAEIKN 207 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + + P L V+DA TGQ+A+ ++F+ G+++TKMDG RGG + Sbjct: 208 IKEAI------LPQETLFVVDAMTGQDAVNTAQVFNETINFDGVVLTKMDGDTRGGAALS 261 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + T P+ F GE ++ LE F + I G D Sbjct: 262 VKYTVGKPIKFASTGEKMDALELFYPDRMAQRILGMGD 299 >gi|144898174|emb|CAM75038.1| Signal recognition particle GTPase [Magnetospirillum gryphiswaldense MSR-1] Length = 455 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 75/205 (36%), Positives = 111/205 (54%), Gaps = 6/205 (2%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VIL+VG+ G GKTT GKL+ ++ KV+LA+ D +R AA QL+I A + + Sbjct: 100 PAVILMVGLQGSGKTTTSGKLAVRLKKDKKKVLLASLDVYRPAAQQQLEILARQADVGSL 159 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 +G A+ A + + DV+I+DTAGRLH + LMA + + V K P Sbjct: 160 PIIMGEMPVAITKRALDVGRKEGYDVVILDTAGRLHIDQELMAEVAAVRDVAK------P 213 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 L V+DA GQ+A+ F+ G TG+++T++DG +RGG + + P+ FLG Sbjct: 214 VETLLVVDAMIGQDAVTLAHEFNEKVGVTGMVLTRVDGDSRGGAALSMRAVTGRPIKFLG 273 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 +GE + LEPF + I G D Sbjct: 274 MGEKLEALEPFHPDRLAGRILGMGD 298 >gi|320535868|ref|ZP_08035944.1| signal recognition particle protein [Treponema phagedenis F0421] gi|320147281|gb|EFW38821.1| signal recognition particle protein [Treponema phagedenis F0421] Length = 446 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 91/308 (29%), Positives = 150/308 (48%), Gaps = 15/308 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----E 68 + K+T F+ K+ G I+ + ++D V EE++ L+ +D+ + V ++ + E Sbjct: 1 MLEKITDTFSGIIRKI--GGKATITEKNIEDAV-EEIKTALLDADVNLRVVRRFINATIE 57 Query: 69 ELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 E + K V+ Q+ + V + I L + VIL +G+ G GKTT Sbjct: 58 EAKGETVLKSVNPGQQFVKIVHDKILSFLGDDKQDLQLKGPDTQSVILFLGLQGSGKTTS 117 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 KL+ ++ G K +L A D R AAI+QL + + V E +A +A Sbjct: 118 AAKLAARLKKEGRKPLLVACDLVRPAAIEQLSVLGTQIEVP-VYKEESKNAVQVAKNGLA 176 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ D +I+DTAGRL ++ +M ++I + K ++P L V D+ TGQ+A+ Sbjct: 177 FAKKNFYDTVIVDTAGRLQIDAEMM---NEIIAIKKAINPV---ETLLVADSMTGQSAVD 230 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F G +G+I+TK D RGG + + P+ F+G GE I DLEPF + + Sbjct: 231 IAKEFDGSVGLSGVILTKFDSDTRGGAALSLKTITGKPILFIGTGEKIEDLEPFYPERIA 290 Query: 308 AVITGCLD 315 + I G D Sbjct: 291 SRILGMGD 298 >gi|27467830|ref|NP_764467.1| ffh protein [Staphylococcus epidermidis ATCC 12228] gi|251810667|ref|ZP_04825140.1| signal recognition particle protein Ffh [Staphylococcus epidermidis BCM-HMP0060] gi|282876331|ref|ZP_06285198.1| signal recognition particle protein [Staphylococcus epidermidis SK135] gi|293366798|ref|ZP_06613474.1| signal recognition particle protein [Staphylococcus epidermidis M23864:W2(grey)] gi|27315375|gb|AAO04509.1|AE016747_6 ffh protein [Staphylococcus epidermidis ATCC 12228] gi|251805827|gb|EES58484.1| signal recognition particle protein Ffh [Staphylococcus epidermidis BCM-HMP0060] gi|281295356|gb|EFA87883.1| signal recognition particle protein [Staphylococcus epidermidis SK135] gi|291319099|gb|EFE59469.1| signal recognition particle protein [Staphylococcus epidermidis M23864:W2(grey)] gi|329724304|gb|EGG60816.1| signal recognition particle protein [Staphylococcus epidermidis VCU144] gi|329736314|gb|EGG72586.1| signal recognition particle protein [Staphylococcus epidermidis VCU028] gi|329736596|gb|EGG72862.1| signal recognition particle protein [Staphylococcus epidermidis VCU045] Length = 455 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 108/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT GKL+ M K +L AGD +R AAIDQL+ + Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPLLVAGDIYRPAAIDQLQTVGKQIDIPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + A K A+ + +D +IIDTAGRLH + LM + ++ + K Sbjct: 161 YSEGDQVSPQQIVENALKHAKEEHLDFVIIDTAGRLHIDEALMNELQEVKEISK------ 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P ++ V+DA TGQ+A+ + F +G+ +TK+DG RGG + I + P+ F+ Sbjct: 215 PDEIMLVVDAMTGQDAVNVAQSFDEQLDVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFV 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+ E ++ LE F + ++ I G D Sbjct: 275 GMSEKLDGLELFHPERMASRILGMGD 300 >gi|253748466|gb|EET02574.1| Signal recognition particle receptor [Giardia intestinalis ATCC 50581] Length = 572 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 65/197 (32%), Positives = 101/197 (51%), Gaps = 14/197 (7%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 RP+VI + GVNGVGKTT I KL + + ++ A D+FRS A++QL+ R A Sbjct: 367 RPYVICMTGVNGVGKTTSIAKLLYIFRNNDFRSLVCACDSFRSGAVEQLQEHCTRLGATL 426 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 G +A+A+A K+A++ D+ +IDT GR +NN LM +G ++ +A Sbjct: 427 YSQGYGKNASAIAKYGIKEAESLDYDICLIDTTGRQYNNGPLMQALGALVL------ENA 480 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAV-------AGTTGLIMTKMDGTA-RGGGLIPIVVT 281 P VL V +A TG + Q++ F G G+I+TK D + G + + Sbjct: 481 PDVVLFVGEALTGNEGIEQLKQFDCALRSYTNSRGVDGIILTKFDTCGDKVGAALNLCFV 540 Query: 282 HKIPVYFLGVGEGINDL 298 IP+ ++G G+ D Sbjct: 541 CNIPIIYVGTGQSYPDF 557 >gi|239928692|ref|ZP_04685645.1| signal recognition particle [Streptomyces ghanaensis ATCC 14672] Length = 516 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 80/267 (29%), Positives = 135/267 (50%), Gaps = 15/267 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + ++ + + +VS Q+VL V+E + +L Sbjct: 28 DATAREIRIALLEADVALPVVRTFIKNVKERALGAEVSKALNPAQQVLKIVNEELVTILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + P VI++ G+ G GKTT+ GKL + + + G +L A D R A++Q Sbjct: 88 GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGRWLKEQGHSPVLVAADLQRPNAVNQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R E G+ D +A ++ A+AK D++I+DTAGRL + +M Sbjct: 147 LSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIDFARAKVHDIVIVDTAGRLGIDQEMMQQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P +L V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301 + I P+ F GE ++D + F Sbjct: 261 ALSIRQVTGKPIMFASNGEKLDDFDAF 287 >gi|71893412|ref|YP_278858.1| signal recognition particle protein [Mycoplasma hyopneumoniae J] gi|71851539|gb|AAZ44147.1| signal recognition particle protein [Mycoplasma hyopneumoniae J] Length = 440 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 97/322 (30%), Positives = 154/322 (47%), Gaps = 34/322 (10%) Query: 17 LTKGFASTSLKLKEGIT----DIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 LT S+ KL++ IT D++ +R + + E +LL+ D V +++++ L Sbjct: 5 LTNRIQSSLKKLQKSITINESDLVEITREIRLALLEADVNLLVVKDFISKVKAQVLKQGL 64 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPL----SKPFNWDFSHRPHVILVVGVNGVGKTTV 127 T + ++L H+ L+ + SK N F+ +I++VG+ G GKTT Sbjct: 65 TSKLNPQQEFLKIL-------HQNLLEILGINSKSIN--FNKTLTIIMLVGLQGSGKTTT 115 Query: 128 IGKLS--KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 KL+ + K++L A DT+R AAIDQLK + + E +A EA Sbjct: 116 AAKLAVFARQKKLAKKILLVACDTYRPAAIDQLKQLGKQVLIEVFYVE--KSPVQIAKEA 173 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 ++ D++I DTAGRL N LM + ++ +K P +L +LDA +GQ+ Sbjct: 174 LIYSKNNDFDLVIFDTAGRLSINEELMNELSEIKENIK------PDQILFILDALSGQDI 227 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + ++F+ TG I+TK+D AR G + I KIPV +G GE I+ LE F Sbjct: 228 INVAQIFNQKINLTGAIITKLDSNARAGAALSITHLLKIPVLLVGTGEKISALELFHPNR 287 Query: 306 FSAVITG------CLDYGEEKI 321 + I G L+ EE I Sbjct: 288 MADRILGMGDVRSLLEQAEENI 309 >gi|57242693|ref|ZP_00370630.1| signal recognition particle protein [Campylobacter upsaliensis RM3195] gi|57016622|gb|EAL53406.1| signal recognition particle protein [Campylobacter upsaliensis RM3195] Length = 445 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 74/257 (28%), Positives = 137/257 (53%), Gaps = 7/257 (2%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 E L+ L+++D+ V ++++ + + ++ L + + + ++L K + Sbjct: 30 ESLKKSLLKADVHHKVTKELLSLIEDDVKKNGIGQKQFLEAIKKNLEEILSISGKNQGFI 89 Query: 107 FSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 FS +P ++L+VG+ G GKTT KL+ + KV++AA D R AA++QL+ + Sbjct: 90 FSSKPPTIVLMVGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEAN 149 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + E ++ +A EA ++A++ DVL++DTAGRL + LM+ + ++ L Sbjct: 150 EIELFYIENETNPIKVAREALQKAKSGLFDVLLVDTAGRLAIDEALMSELKEVKTSLN-- 207 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P + V DA +GQ+ ++ F+ G +G+I++K D +GG + I IP Sbjct: 208 ----PDEIFYVADAMSGQDGVKTASSFNEALGLSGVILSKFDADTKGGVALGIARQVNIP 263 Query: 286 VYFLGVGEGINDLEPFV 302 + F+GVGE + DLE F+ Sbjct: 264 LRFIGVGEKVADLEIFI 280 >gi|269124183|ref|YP_003306760.1| signal recognition particle protein [Streptobacillus moniliformis DSM 12112] gi|268315509|gb|ACZ01883.1| signal recognition particle protein [Streptobacillus moniliformis DSM 12112] Length = 443 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 81/304 (26%), Positives = 150/304 (49%), Gaps = 16/304 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S KL+E + ++ + + E L ++ L+ +D+ +V + V+ + K Sbjct: 2 FKGLSDKLQETFKKLSGQSKITESNITEALREVRLALLEADVNYSVVKNFVKRIKEKAQG 61 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V Q+ + +++ + ++L + N S +P +I++VG+ G GKTT GKL Sbjct: 62 QEVIKGVNPRQQFIKIINDELIEVLGGQNTSLNKSTS-KPTIIMLVGLQGAGKTTFAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 +K + K L D +R AA QL + A++ F E ++ + +A+ Sbjct: 121 AKFLKKEKSKAFLIGADVYRPAAKKQLMVLANQIGVPFFSIEDSNNVLEIVNNGLLEAKK 180 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + D ++IDTAGRLH + LM + + + P +L V+D TGQ+A+ + Sbjct: 181 EDADYVLIDTAGRLHVDEALMQELQDVKSSVN------PTEILLVVDGMTGQDAVNVAKT 234 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ V TG+++TK+DG RGG + I P+ ++ GE ++D+ F + ++ I Sbjct: 235 FNDVLDITGVVVTKLDGDTRGGAALSIKEISGKPIKYISEGEKLDDIAVFHPERLASRIL 294 Query: 312 GCLD 315 G D Sbjct: 295 GMGD 298 >gi|86141178|ref|ZP_01059724.1| signal recognition particle protein [Leeuwenhoekiella blandensis MED217] gi|85831737|gb|EAQ50192.1| signal recognition particle protein [Leeuwenhoekiella blandensis MED217] Length = 442 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 80/273 (29%), Positives = 134/273 (49%), Gaps = 10/273 (3%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL--SKPF 103 +E+ L+ +D+ +A+ + K +DV + + +++L+ L L + Sbjct: 32 KEIRRALVDADVNYKIAKDFTNTVKEKALGQDVLTALKPGQLMTKLVKDELTELMGGEAE 91 Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWA 162 + S P VIL+ G+ G GKTT GKL+ + + K +L A D +R AAIDQL + Sbjct: 92 GINLSGNPSVILMSGLQGSGKTTFSGKLANFLKNKKTKKPLLVACDVYRPAAIDQLHVVG 151 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 D+ + ++ D ++ A A+A + +IIDTAGRL + +M I + + Sbjct: 152 DQIGVEVFSNKEEKDPVKISEAAIAHAKANGFNAVIIDTAGRLAVDQAMMNEIAAIHEAI 211 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 K P L V+D+ TGQ+A+ + F+ V G+I+TK+DG RGG + I Sbjct: 212 K------PQETLFVVDSMTGQDAVNTAKAFNDVLNFDGVILTKLDGDTRGGAALSIKTVV 265 Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + ++ F + I G D Sbjct: 266 DKPIKFIGTGEKMEAIDVFYPSRMADRILGMGD 298 >gi|300708288|ref|XP_002996326.1| hypothetical protein NCER_100586 [Nosema ceranae BRL01] gi|239605619|gb|EEQ82655.1| hypothetical protein NCER_100586 [Nosema ceranae BRL01] Length = 415 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 92/325 (28%), Positives = 168/325 (51%), Gaps = 35/325 (10%) Query: 4 QKVASESLSWIRKLTKGFASTSLK--LKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 +K+ +S IR+ F + + K K+G + + S++ D ++ ++E L++ ++ Sbjct: 96 EKLNYSDVSVIRR---NFINITTKKAFKKGFS-LFSNKIHVDELKTKMELHLVKKNVDYN 151 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYD-----VSELIHKMLMPLS-KPFNWDFSHRPHV-- 113 + + E ++ + K+ +V+ V D VS ++ K++ + K D ++ Sbjct: 152 TTKILTECVINQ--LKEENVEYVSPDSFKKYVSTVLQKLIPSVDHKKLLKDIKNKKEAFS 209 Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR-----TSAD 168 I VGVNGVGK+T + K+ + + LKV +AA DTFR+ A++QLK+ DR S Sbjct: 210 ICFVGVNGVGKSTSLAKICYWLLENDLKVYIAACDTFRAGAVEQLKVHVDRFRQSGYSVG 269 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 F G D A++A A + A ++K DV++IDTAGR+HN LM + K+I++ + Sbjct: 270 FYEKGYGKDDASVARTAIQIATSEKYDVILIDTAGRMHNKLSLMESLSKLIKI------N 323 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGT-------TGLIMTKMDGT-ARGGGLIPIVV 280 P ++ V +A G ++L ++ F+ L++TK+D + G ++ + Sbjct: 324 EPDFIVYVGEALVGVDSLDHIKEFNKFISKGSIHRKIDSLLLTKVDTVDDKIGQILNMTF 383 Query: 281 THKIPVYFLGVGEGINDLEPFVAKD 305 T PV+FLG G+ +DL + D Sbjct: 384 TSHAPVFFLGTGQANSDLSEITSGD 408 >gi|66818279|ref|XP_642799.1| signal recognition particle receptor alpha subunit [Dictyostelium discoideum AX4] gi|74856964|sp|Q54ZR7|SRPR_DICDI RecName: Full=Signal recognition particle receptor subunit alpha; Short=SR-alpha; Short=Signal recognition particle receptor; AltName: Full=Docking protein alpha; Short=DP-alpha gi|60470903|gb|EAL68875.1| signal recognition particle receptor alpha subunit [Dictyostelium discoideum AX4] Length = 615 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 74/203 (36%), Positives = 108/203 (53%), Gaps = 19/203 (9%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 RP+ I+ GVNGVGK+T + K+ ++ G K MLAA DTFRS AI+QLK ADR + Sbjct: 406 RPYSIVFSGVNGVGKSTNLAKVCYWLTANGYKCMLAACDTFRSGAIEQLKTHADRLNVHL 465 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 DAA++A +A A+ DV++IDT GR+ NN LM + K++ + + Sbjct: 466 FERGYSKDAASVAQDAIAFAKDTGYDVVLIDTTGRMQNNEPLMKALSKLV------NQNN 519 Query: 230 PHSVLQVLDATTGQNALRQVEMFHA----VAGTT--------GLIMTKMDGT-ARGGGLI 276 VL V +A G + + Q+ F +A TT G+I+TK D + G I Sbjct: 520 VDLVLFVGEALVGNDGVDQLTKFDKSLSLLANTTQTHIRTIDGIILTKFDTIDDKVGAAI 579 Query: 277 PIVVTHKIPVYFLGVGEGINDLE 299 +V + P+ FLG G+ DL+ Sbjct: 580 SMVYSTGHPILFLGTGQNYTDLK 602 >gi|332360637|gb|EGJ38446.1| signal recognition particle protein [Streptococcus sanguinis SK49] Length = 524 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QA+A D ++IDTAGRL + LM + ++ L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKTLAN--- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F++ TG+I+TK+DG RGG + + P+ Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|82750841|ref|YP_416582.1| signal recognition particle protein [Staphylococcus aureus RF122] gi|82656372|emb|CAI80790.1| signal recognition particle protein [Staphylococcus aureus RF122] Length = 455 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 79/269 (29%), Positives = 135/269 (50%), Gaps = 13/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V ++ ++ + + DV Q+V+ V + + K++ + N Sbjct: 39 LLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+++VG+ G GKTT GKL+ M K ML A D +R AAI+QL+ + Sbjct: 98 NKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQID 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + A K A+ + +D +IIDTAGRLH + LM + ++ + K Sbjct: 158 IPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAK--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P+ ++ V+D+ TGQ+A+ E F TG+ +TK+DG RGG + I + P+ Sbjct: 215 ---PNEIILVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+ E ++ LE F + ++ I G D Sbjct: 272 KFVGMSEKLDGLELFHPERMASRILGMGD 300 >gi|319646021|ref|ZP_08000251.1| signal recognition particle protein [Bacillus sp. BT1B_CT2] gi|317391771|gb|EFV72568.1| signal recognition particle protein [Bacillus sp. BT1B_CT2] Length = 451 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + +L A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTSTGKLANLLRKKHNRNPLLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A ++A+ D ++IDTAGRLH + LM + ++ + Sbjct: 159 PVFSLGDKVSPVEIAKQAIEKAKEDHHDYVLIDTAGRLHIDEELMDELEQVKETAQ---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+D+ TGQ+A+ + F+ G TG+I+TK+DG RGG + I P+ Sbjct: 215 --PEEIFLVVDSMTGQDAVNVAKSFNEQLGVTGVILTKLDGDTRGGAALSIRAVTNTPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ LEPF + ++ I G D Sbjct: 273 FAGMGEKLDALEPFHPERMASRILGMGD 300 >gi|238651027|ref|YP_002916884.1| signal recognition particle protein [Rickettsia peacockii str. Rustic] gi|238625125|gb|ACR47831.1| signal recognition particle protein [Rickettsia peacockii str. Rustic] Length = 449 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 150/290 (51%), Gaps = 16/290 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89 I++ ++D +R+ + L+ SD+ + V + + E+ K ++V SV Q ++ + Sbjct: 21 ILTEAQIDAAMRD-IRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIH 79 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 E + +L + + +P V L+VG+ G GKTT KL+ ++S+ KV+L + D Sbjct: 80 EEMINLLASSKSETKLNLNSKPPVNFLMVGLQGSGKTTASSKLALRLSNQNKKVLLVSLD 139 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 T+R AA +QL I A+ + + G + A +A+ DV+I DTAGR + Sbjct: 140 TYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAIAEAKISAYDVVIYDTAGRTQID 199 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 +M + ++++ P L V+D+ TGQ+A+ F+ +GLI++++DG Sbjct: 200 KAMMEEALAIKKIVE------PTETLLVIDSMTGQDAVVTASSFNEKLAISGLILSRIDG 253 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 ++GG + + K P+ FL GE + DLE F A+ ++ I LD G+ Sbjct: 254 DSKGGAALSVKYITKKPIKFLSSGENLIDLEEFDAERLASRI---LDMGD 300 >gi|327474237|gb|EGF19644.1| signal recognition particle protein [Streptococcus sanguinis SK408] Length = 524 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QA+A D ++IDTAGRL + LM + ++ L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F++ TG+I+TK+DG RGG + + P+ Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|325689716|gb|EGD31720.1| signal recognition particle protein [Streptococcus sanguinis SK115] Length = 524 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QA+A D ++IDTAGRL + LM + ++ L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F++ TG+I+TK+DG RGG + + P+ Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|324991163|gb|EGC23097.1| signal recognition particle protein [Streptococcus sanguinis SK353] Length = 524 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QA+A D ++IDTAGRL + LM + ++ L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F++ TG+I+TK+DG RGG + + P+ Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|162447215|ref|YP_001620347.1| signal recognition particle GTPase [Acholeplasma laidlawii PG-8A] gi|161985322|gb|ABX80971.1| signal recognition particle GTPase [Acholeplasma laidlawii PG-8A] Length = 467 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 74/203 (36%), Positives = 104/203 (51%), Gaps = 8/203 (3%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 + +G+ G GKTT IGK+ + K VML A D +R AAIDQL + + V Sbjct: 103 FMTIGLQGSGKTTAIGKMGLYIRKKDKKKVMLVAADVYRPAAIDQL-VTIGKGLGIHVYE 161 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 E DA + K A+ DV+I+DTAGRL + +M + + +LK P+ Sbjct: 162 EGIKDARVIVKNGLKYAKDNNYDVVIVDTAGRLTIDEDMMQELKDVKEILK------PNE 215 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 VL +DA GQ A + FH G TG+I+TKMDG RGG + I +IP+ F G Sbjct: 216 VLLTVDAMMGQEAANVAKSFHDQIGATGVILTKMDGDTRGGAALSIREISQIPIKFASSG 275 Query: 293 EGINDLEPFVAKDFSAVITGCLD 315 E ++ LE F + ++ I G D Sbjct: 276 EKMDSLEAFHPERMASRILGMGD 298 >gi|323351581|ref|ZP_08087235.1| signal recognition particle protein [Streptococcus sanguinis VMC66] gi|322122067|gb|EFX93793.1| signal recognition particle protein [Streptococcus sanguinis VMC66] Length = 524 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QA+A D ++IDTAGRL + LM + ++ L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F++ TG+I+TK+DG RGG + + P+ Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|323144365|ref|ZP_08078974.1| signal recognition particle protein [Succinatimonas hippei YIT 12066] gi|322415867|gb|EFY06592.1| signal recognition particle protein [Succinatimonas hippei YIT 12066] Length = 466 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 91/292 (31%), Positives = 150/292 (51%), Gaps = 19/292 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I R+ +D +++ L ++ L+ +D+ + V + +++ K Sbjct: 2 FDNLTERLNRTLKNISGKGRITEDNIKDTLREVRTALLEADVALPVVKSFTQKVKEKALG 61 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWDF------SHRPHVILVVGVNGVGKTTVIGK 130 ++VS+ L E I + L + + + P VIL+ G+ G GKTT K Sbjct: 62 QEVSLS--LTPGQEFIKTVYAQLVETMGGETAELNLATQPPAVILLAGLQGAGKTTSAAK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L+ + + KV++ + DT+R AAIDQL A + D S+ S A+A A +A Sbjct: 120 LALYIKERLKKKVLMVSVDTYRPAAIDQLLTLAKEINVDAFPSDPKSTPEAIAAAALAEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ DVLI+DTAGRL + +M + K+ V+ P L V+DA TGQ+A Sbjct: 180 KARFYDVLIVDTAGRLAVDEFMMDEVKKLHAVVN------PIETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F TG+I+TK DG ARGG + + P+ F+G+GE + LEPF Sbjct: 234 KAFAEALPLTGVILTKADGDARGGAALSVREITGKPIKFIGMGEKVAALEPF 285 >gi|325922541|ref|ZP_08184301.1| signal recognition particle subunit FFH/SRP54 (srp54) [Xanthomonas gardneri ATCC 19865] gi|325546980|gb|EGD18074.1| signal recognition particle subunit FFH/SRP54 (srp54) [Xanthomonas gardneri ATCC 19865] Length = 458 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 83/275 (30%), Positives = 139/275 (50%), Gaps = 22/275 (8%) Query: 39 RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 R ++ +RE E+ L+ +D+ + V Q ++E + + ++V Q ++ V + Sbjct: 21 RLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKIVRD 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149 + ++ + N + P +IL+ G+ G GKTT +GKL+K + + K VM+ + D Sbjct: 81 ELTAVMGAAATDLNLNVPA-PAIILMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADV 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI+QLK A++ F S+ + A A+ VDVL++DTAGRL ++ Sbjct: 140 YRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDARKSFVDVLLVDTAGRLAIDA 199 Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 +M I + HA P L V+DA TGQ+A + F TG+++TK Sbjct: 200 AMMDEIKAL---------HAAVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKT 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 DG ARGG + + P+ F+G GE + L+ F Sbjct: 251 DGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVF 285 >gi|254500337|ref|ZP_05112488.1| signal recognition particle protein [Labrenzia alexandrii DFL-11] gi|222436408|gb|EEE43087.1| signal recognition particle protein [Labrenzia alexandrii DFL-11] Length = 511 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 83/286 (29%), Positives = 147/286 (51%), Gaps = 14/286 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSE 90 +S +++ +RE + LI +D+ + + + +++ + +V SV Q V+ V + Sbjct: 22 LSENDVNEAMRE-IRRALIEADVALPIVRSFTDKVRHRAVGAEVVKSVTPGQMVVKIVHD 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDT 149 + +ML ++P + + + P I++VG+ G GKTT K++++ + KV++A+ DT Sbjct: 81 QLIEMLGEDAQPIDLN-APAPVAIMMVGLQGSGKTTTTAKIARRFTQRDKRKVLMASLDT 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 R AA +QLKI ++ D + G +A A A+ DV+++DTAGR+H + Sbjct: 140 RRPAAQEQLKILGEQNDVDTLPIIEGQGPVEIASRAMSAAKLGGYDVVLLDTAGRIHIDE 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 LM + ++ PH ++ V D+ TGQ+A+ + F G TG+ +T+MDG Sbjct: 200 PLMVEMAEVKAAAN------PHEIILVADSLTGQDAVNLAQSFDERVGITGIALTRMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + + PV +G GE + LE F K + I G D Sbjct: 254 GRGGAALSMQAVTGKPVKLIGTGEKSDALEDFHPKRIADRILGMGD 299 >gi|325694512|gb|EGD36421.1| signal recognition particle protein [Streptococcus sanguinis SK150] Length = 524 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QA+A D ++IDTAGRL + LM + ++ L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F++ TG+I+TK+DG RGG + + P+ Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|323705465|ref|ZP_08117040.1| signal recognition particle protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535367|gb|EGB25143.1| signal recognition particle protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 446 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 82/275 (29%), Positives = 137/275 (49%), Gaps = 14/275 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSK 101 +E++ L+ +D+ V ++ + + K ++V Q V+ V++ + ++ SK Sbjct: 33 KEVKIALLEADVNFKVVKEFINTVTEKSLGQEVMESLTPAQHVIKIVNDELTALMG--SK 90 Query: 102 PFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 +FS +P VI++VG+ G GKTT GKL+ + G +L A D +R AAI QL++ Sbjct: 91 ESKINFSDKPPTVIMMVGLQGSGKTTTSGKLANYLRSKGKSPVLVACDIYRPAAIKQLQV 150 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 + + +A + A+ +V+IIDTAGRLH + LM + K I+ Sbjct: 151 VGSSINVPVFSMGDKTSPVDIAKASIDFARNNNYNVVIIDTAGRLHVDEELMDEL-KNIK 209 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 D P +L V+DA TGQ+ + E F+ G+I+TK+DG RGG + + Sbjct: 210 -----DAVNPDEILLVVDAMTGQDVVNVAESFNEKLDIDGVILTKLDGDTRGGAALSVKA 264 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + P+ F+ GE D+E F ++ I G D Sbjct: 265 VTRKPIKFIASGEKFTDIEVFHPDRMASRILGMGD 299 >gi|171741396|ref|ZP_02917203.1| hypothetical protein BIFDEN_00479 [Bifidobacterium dentium ATCC 27678] gi|171277010|gb|EDT44671.1| hypothetical protein BIFDEN_00479 [Bifidobacterium dentium ATCC 27678] Length = 547 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 90/324 (27%), Positives = 153/324 (47%), Gaps = 36/324 (11%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F+S + +L + S +L DG E+ L+ +D+ + V + + + Sbjct: 4 FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGRIRERALG 63 Query: 77 KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +VS Q+V+ V+E + +L + +P N+ + P +I++ G+ G GKTT+ GK Sbjct: 64 TEVSQALNPAQQVVKIVNEELTDVLGAGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 122 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175 L + D+G +L A D R A+ QL++ +R E G Sbjct: 123 LGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSAGGEAVASPGLT 182 Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 D +A ++ A+ K D +IIDTAGRL + LM + R ++ D P+ +L Sbjct: 183 TGDPVKVARDSVAFARQKLYDTVIIDTAGRLGVDEELM----RQARDIR--DAVQPNEIL 236 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DA GQ+A++ + F TG++++K+DG ARGG + + P+ F GEG Sbjct: 237 FVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEG 296 Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318 + D E F ++ I LD G+ Sbjct: 297 LKDFEVFHPDRMASRI---LDMGD 317 >gi|125717990|ref|YP_001035123.1| SRP54, signal recognition particle GTPase protein [Streptococcus sanguinis SK36] gi|125497907|gb|ABN44573.1| SRP54, signal recognition particle GTPase protein, putative [Streptococcus sanguinis SK36] Length = 524 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QA+A D ++IDTAGRL + LM + ++ L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F++ TG+I+TK+DG RGG + + P+ Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|56968646|gb|AAW32279.1| Ffh [Streptococcus mutans] Length = 516 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 86/305 (28%), Positives = 148/305 (48%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L+ ++ R+L + V +E+ L+ +D+ + V ++ ++ + + Sbjct: 3 FESLTERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKEFIKRVRKRAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V Q+++ V+E + +L + S P +I++VG+ G GKTT GKL Sbjct: 63 HEVIDTLDPSQQIIKIVNEELTAVLGSETAEIEKS-SKIPTIIVMVGLQGAGKTTFAGKL 121 Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 + K+ + + ++ A D +R AAIDQLK + + A + + QA+ Sbjct: 122 ANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTEHSAVEIVSQGLAQAK 181 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + D ++IDTAGRL + LM + R +K L P+ +L V+D+ GQ A Sbjct: 182 ENRNDYVLIDTAGRLQIDEKLMTEL----RDIKAL--ANPNEILLVVDSMIGQEAANVAR 235 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+I+TK+DG RGG + + P+ F G GE I D+E F S+ I Sbjct: 236 EFNQQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSRI 295 Query: 311 TGCLD 315 G D Sbjct: 296 LGMGD 300 >gi|332018340|gb|EGI58945.1| Signal recognition particle receptor subunit alpha-like protein [Acromyrmex echinatior] Length = 613 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 86/295 (29%), Positives = 147/295 (49%), Gaps = 41/295 (13%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP- 98 V E+L+D LI ++ +AQK+ + + TK K D V +++ + ++L P Sbjct: 317 VLEKLKDHLITKNVAADIAQKLCDSVGTKLEGKILGTFDSVANTVKATLTDALVQILSPK 376 Query: 99 -----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 L S+RP+V+ GVNGVGK+T + K+ + + +V++AA DTFR+ Sbjct: 377 RRIDILRDALEAKNSNRPYVMTFCGVNGVGKSTNLAKICFWLIENNFRVLIAACDTFRAG 436 Query: 154 AIDQLKI-------------WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 A++QL+ +++ G DAA +A EA + A+ ++DV+++D Sbjct: 437 AVEQLRTHMRHLNALHPPEKHGNQSMVQLYEKGYGKDAAGIAMEAIRFAKDSRIDVVLVD 496 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT 259 TAGR+ +N LM + K+I+V + P VL V +A G A+ Q+ F+ A+A + Sbjct: 497 TAGRMQDNEPLMRALAKLIKV------NEPDLVLFVGEALVGNEAVDQLVKFNQALADYS 550 Query: 260 ---------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 G+++TK D + G I + P+ F+G G+ DL+ AK Sbjct: 551 QSANPHMIDGIVLTKFDTIDDKVGAAITMTYITGQPIVFVGTGQTYTDLKSLNAK 605 >gi|150006884|ref|YP_001301627.1| putative signal recognition protein [Parabacteroides distasonis ATCC 8503] gi|255016084|ref|ZP_05288210.1| putative signal recognition protein [Bacteroides sp. 2_1_7] gi|256842126|ref|ZP_05547631.1| signal recognition particle protein [Parabacteroides sp. D13] gi|262384367|ref|ZP_06077502.1| signal recognition particle protein [Bacteroides sp. 2_1_33B] gi|298377310|ref|ZP_06987263.1| signal recognition particle protein [Bacteroides sp. 3_1_19] gi|301308707|ref|ZP_07214659.1| signal recognition particle protein [Bacteroides sp. 20_3] gi|149935308|gb|ABR42005.1| putative signal recognition protein [Parabacteroides distasonis ATCC 8503] gi|256736442|gb|EEU49771.1| signal recognition particle protein [Parabacteroides sp. D13] gi|262294070|gb|EEY82003.1| signal recognition particle protein [Bacteroides sp. 2_1_33B] gi|298265724|gb|EFI07384.1| signal recognition particle protein [Bacteroides sp. 3_1_19] gi|300833231|gb|EFK63849.1| signal recognition particle protein [Bacteroides sp. 20_3] Length = 445 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 92/312 (29%), Positives = 150/312 (48%), Gaps = 23/312 (7%) Query: 8 SESLSWIRKLTKGFASTSLKLKEG-ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 SE L KL KG EG IT+I + L D VR+ L D + + + + Sbjct: 6 SERLDRSFKLLKG---------EGKITEINVAETLKD-VRKALLDADVNYKVAKSFTDTV 55 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGK 124 E+ L + V +++ +++H L L + + P +IL+ G+ G GK Sbjct: 56 KEKALGQNVLTSVKPSQLMV---KIVHDELASLMGGTAVDVNLQGNPAIILMSGLQGSGK 112 Query: 125 TTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 TT GKL+ + + K +LAA D +R AAI+QL++ ++ + +A Sbjct: 113 TTFTGKLASLLKTKKNKKPLLAACDVYRPAAIEQLRVVGEQVGVPVYMELENKNPVEIAM 172 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 A ++A+AK DV+I+DTAGRL + +M I + ++ P L V+DA TGQ Sbjct: 173 NAIREARAKGNDVVIVDTAGRLAIDEQMMNEIAAIKSAIQ------PDETLFVVDAMTGQ 226 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 +A+ F+ G+++TK+DG RGG + I P+ F+G GE ++ L+ F Sbjct: 227 DAVNTAREFNERLNFDGVVLTKLDGDTRGGAALSIRTVVDKPIKFVGTGEKMDALDIFHP 286 Query: 304 KDFSAVITGCLD 315 + + I G D Sbjct: 287 ERMADRILGMGD 298 >gi|325696493|gb|EGD38383.1| signal recognition particle protein [Streptococcus sanguinis SK160] Length = 524 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 75/209 (35%), Positives = 111/209 (53%), Gaps = 13/209 (6%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P +I++VG+ G GKTT GKL+ K+ D +M+AA D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEDNARPLMIAA-DIYRPAAIDQLKTLGQQI--D 157 Query: 169 FVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 +G++ A + + +QA+A D ++IDTAGRL + LM + ++ L Sbjct: 158 VPVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN-- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P+ +L V+DA GQ A F++ TG+I+TK+DG RGG + + P+ Sbjct: 215 ---PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 272 KFTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|311113791|ref|YP_003985013.1| signal recognition particle protein [Rothia dentocariosa ATCC 17931] gi|310945285|gb|ADP41579.1| signal recognition particle protein [Rothia dentocariosa ATCC 17931] Length = 528 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 90/316 (28%), Positives = 150/316 (47%), Gaps = 28/316 (8%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L ++ RL D E+ L+ +D+ V V ++ + + Sbjct: 2 FNSLSDRLTATFKNLRGKGRLSEADIDATVREIRRALLDADVAVPVVREFAAHIKERALG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+++ V+E + +L ++ N + P +I++ G+ G GKTT+ GKL Sbjct: 62 AEVSEALNPSQQIVKIVNEELITILGGQTRRINMAKTG-PTIIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------SDAAALA 182 +K + G +L A D R A+ QLK+ +R G D +A Sbjct: 121 AKWLKGQGHTPILVASDLQRPNAVTQLKVVGERAGVPVFAPHPGVTSEFDTPTGDPVQVA 180 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 + +A+AK DV+I+DTAGRL ++ LM + R ++ D P VL V+DA G Sbjct: 181 RDGVAEARAKLHDVVIVDTAGRLGVDAELM----QQARNIR--DAIEPQEVLFVIDAMIG 234 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 Q+A+ F+ TG++++K+DG ARGG + + P+ F GE ++D E F Sbjct: 235 QDAVNTANAFNEGVDFTGVVLSKLDGDARGGAALSVASVTGKPIMFASTGENVDDFEQFH 294 Query: 303 AKDFSAVITGCLDYGE 318 ++ I LD G+ Sbjct: 295 PDRMASRI---LDMGD 307 >gi|258646849|ref|ZP_05734318.1| signal recognition particle protein [Dialister invisus DSM 15470] gi|260404288|gb|EEW97835.1| signal recognition particle protein [Dialister invisus DSM 15470] Length = 457 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 93/293 (31%), Positives = 139/293 (47%), Gaps = 20/293 (6%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F + KL+ D+ RL D E+ L+ +D+ VA+ + ++ K Sbjct: 3 FENLGDKLQSAFKDLRGKGRLSESDIDSALREVRRALLEADVNFKVAKDFIAQVREKAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V Q V+ V + + ++L S VI++VG+ G GKTT GKL Sbjct: 63 EEVFGSLKPDQTVIKIVRDELTELLGGTQSKITMSSSGLT-VIMLVGLQGAGKTTTAGKL 121 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + G K +LAA D +R AAI QL++ + D +A A A++ Sbjct: 122 ALMLKKRGKKPLLAACDVYRPAAIKQLEVLGQQVDVPVYRMPDNVDPVHIARYAVDAAKS 181 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 DV+I+DTAGRL + LMA +R +K + H PH +L VLD+ TGQ+A+ Sbjct: 182 YGRDVVILDTAGRLTIDEKLMA----ELRNIKS-EVH-PHEILLVLDSMTGQDAVTTAGT 235 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE----GINDLEP 300 F G G I+TKMDG ARGG + I P+ +GV E G+ D P Sbjct: 236 FDENLGIDGTILTKMDGDARGGAALSIKAVTGKPIKMIGVSEKLDGGLEDFHP 288 >gi|328946321|gb|EGG40465.1| signal recognition particle protein [Streptococcus sanguinis SK1087] Length = 524 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QA+A D ++IDTAGRL + LM + ++ L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F++ TG+I+TK+DG RGG + + P+ Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|255321342|ref|ZP_05362502.1| signal recognition particle protein [Campylobacter showae RM3277] gi|255301495|gb|EET80752.1| signal recognition particle protein [Campylobacter showae RM3277] Length = 446 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 68/217 (31%), Positives = 114/217 (52%), Gaps = 9/217 (4%) Query: 99 LSKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 L+ P N F P ++L+ G+ G GKTT KL+ + KV++AA D R AA+ Sbjct: 79 LTTPGNQGFVFAPVAPTIVLMAGLQGSGKTTTTIKLANYLKLRKKKVLVAACDLQRLAAV 138 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 +QL+ + + E +D +A +A +A++ DVL++DTAGRL + LM I Sbjct: 139 EQLRQLCEANEIELFSIENETDPLNVAKQALAKAKSGLYDVLLVDTAGRLAIDEALMKQI 198 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 + L+ PH + V DA +GQ+ ++ F+ +G++++K D ++GG Sbjct: 199 KDINSALE------PHEIFYVADAMSGQDGVKTASTFNDALKISGVVLSKFDSDSKGGVA 252 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 I I IP+ F+G+GE + D+E F+ + + I G Sbjct: 253 IGIAKQLNIPLRFVGIGEKVGDMESFIPERIVSRIMG 289 >gi|324992911|gb|EGC24831.1| signal recognition particle protein [Streptococcus sanguinis SK405] Length = 524 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QA+A D ++IDTAGRL + LM + ++ L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F++ TG+I+TK+DG RGG + + P+ Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|225011681|ref|ZP_03702119.1| signal recognition particle protein [Flavobacteria bacterium MS024-2A] gi|225004184|gb|EEG42156.1| signal recognition particle protein [Flavobacteria bacterium MS024-2A] Length = 442 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 112/220 (50%), Gaps = 13/220 (5%) Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL----SKKMSDAGLKVMLAAGDTFRSAAI 155 S+ + +P +IL+ G+ G GKTT GKL SKK S K +L A D +R AAI Sbjct: 88 SEAVELNLEEKPAIILMSGLQGSGKTTFTGKLALHLSKKHSK---KPLLVACDVYRPAAI 144 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 DQL + A++ D +A A + A+ DV++IDTAGRL + +LM I Sbjct: 145 DQLGVVAEQVGVAIYEDREEKDPVKIALAALEIAKKDNHDVVLIDTAGRLAIDEVLMKEI 204 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 + +K P L V+DA TGQ+A+ + F+ + G+I+TK+DG RGG Sbjct: 205 KAIHSAVK------PSETLFVVDAMTGQDAVNTAKAFNDLLNFDGVILTKLDGDTRGGAA 258 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+G GE + ++ F + + I G D Sbjct: 259 LTIKSVVNKPIKFIGTGEKMEAIDVFYPERMADRILGMGD 298 >gi|329943003|ref|ZP_08291777.1| signal recognition particle protein [Chlamydophila psittaci Cal10] gi|332287585|ref|YP_004422486.1| signal recognition particle protein [Chlamydophila psittaci 6BC] gi|313848159|emb|CBY17160.1| signal recognition particle protein [Chlamydophila psittaci RD1] gi|325507143|gb|ADZ18781.1| signal recognition particle protein [Chlamydophila psittaci 6BC] gi|328814550|gb|EGF84540.1| signal recognition particle protein [Chlamydophila psittaci Cal10] gi|328914836|gb|AEB55669.1| signal recognition particle protein [Chlamydophila psittaci 6BC] Length = 447 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 92/306 (30%), Positives = 154/306 (50%), Gaps = 23/306 (7%) Query: 22 ASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLTK 73 +S S KL + +++SRR+ ++ + E + ++ L+ +D+ V + K+ E++L + Sbjct: 3 SSLSQKLSSIFSSLVASRRITEENISEAIREVRLALLDADVNYHVVKSFIAKVKEKVLGE 62 Query: 74 RYAKDVS--VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 K VS Q + Y EL L + + S P VIL+ G+ G GKTT KL Sbjct: 63 EVWKHVSPGQQFIRYLHEELTE----LLGDKTDLNTSGNPGVILLCGLQGTGKTTTCAKL 118 Query: 132 SKKMSDA--GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 + + + KV++ D R AA++QL+ +T A+ SE G D + +A A Sbjct: 119 AAYVLEERKAKKVLVVPCDLKRFAAVEQLRNLISKTKAELYNSE-GQDPVKVVSQALDYA 177 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + + D+++IDTAGRLH + +LM + + +V HA + V++ GQ+A+ Sbjct: 178 KQEGHDLVLIDTAGRLHVDEVLMEELASIQKV-----SHACERLF-VMNLAMGQDAVSTA 231 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F TG+I++ DG AR G ++ + P+ F G GE I DL PF A+ + Sbjct: 232 KAFDNYLDLTGVIISMTDGDARAGAVLSMKSLLGKPIKFEGCGERIQDLRPFNAESMADR 291 Query: 310 ITGCLD 315 I G D Sbjct: 292 ILGMGD 297 >gi|297622324|ref|YP_003703758.1| signal recognition particle protein [Truepera radiovictrix DSM 17093] gi|297163504|gb|ADI13215.1| signal recognition particle protein [Truepera radiovictrix DSM 17093] Length = 439 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 91/298 (30%), Positives = 143/298 (47%), Gaps = 22/298 (7%) Query: 30 EGITDIISSR-RL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV--- 81 +G+ D + R RL +D VR L ++ L+ +D+ + VA+ + + K + + Sbjct: 10 QGVFDSLRGRGRLTEDEVRAALREVRVALLEADVSLEVARDFTKRVQEKAVGSETLMSLQ 69 Query: 82 --QRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137 QRV+ ++H L+ L K + +V L++G+ G GKTT GKL+ K Sbjct: 70 PDQRVIA----IVHDELVELLGGKTAQPSLKNDANVWLLLGLQGAGKTTTAGKLAYKYKA 125 Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197 G + +L A DT R AA +QL++ + + E A + + D++ Sbjct: 126 QGRRPLLVAADTQRPAAREQLRVLGKQIGVPVLEVEDHETPARTRARLQEVLRTTYHDLV 185 Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257 I+DTAGRL + LM + ++ L +P + V+DA TGQ +L + F G Sbjct: 186 IVDTAGRLQIDEALMDAVAELKAEL------SPSETMLVIDAMTGQQSLPVAKTFDERVG 239 Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TGLIMTK+DG ARGG + P+YF G+ E I+ LE F + I G D Sbjct: 240 VTGLIMTKLDGDARGGAALSARHVTGKPIYFAGMSEKIDGLEAFHPDRIAGRILGMGD 297 >gi|197101205|ref|NP_001125759.1| signal recognition particle receptor subunit alpha [Pongo abelii] gi|55729093|emb|CAH91283.1| hypothetical protein [Pongo abelii] Length = 638 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 145/302 (48%), Gaps = 41/302 (13%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96 SR + V +++ D LI ++ +A ++ E + K K + + V V + + + L Sbjct: 334 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 393 Query: 97 MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + + +P + RP+V+ GVNGVGK+T + K+S + + G V++AA Sbjct: 394 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 453 Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193 DTFR+ A++QL+ R SA G DAA +A EA A+ + Sbjct: 454 CDTFRAGAVEQLRTHTRRLSALHPPEKQGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 513 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252 DV+++DTAGR+ +N+ LM + K+I V + P VL V +A G A+ Q+ F Sbjct: 514 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 567 Query: 253 -----HAVAGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 H++A T G+++TK D + G I + P+ F+G G+ DL Sbjct: 568 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYVTSKPIVFVGTGQTYCDLRSLN 627 Query: 303 AK 304 AK Sbjct: 628 AK 629 >gi|253731855|ref|ZP_04866020.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724407|gb|EES93136.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 455 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 78/269 (28%), Positives = 135/269 (50%), Gaps = 13/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V ++ ++ + + DV Q+V+ V + + +++ + N Sbjct: 39 LLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTQLMGGENTSINMS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+++VG+ G GKTT GKL+ M K ML A D +R AAI+QL+ + Sbjct: 98 NKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQID 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + A K A+ + +D +IIDTAGRLH + LM + ++ + K Sbjct: 158 IPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKEIAK--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P+ ++ V+D+ TGQ+A+ E F TG+ +TK+DG RGG + I + P+ Sbjct: 215 ---PNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+ E ++ LE F + ++ I G D Sbjct: 272 KFVGMSEKLDGLELFHPERMASRILGMGD 300 >gi|194212972|ref|XP_001505146.2| PREDICTED: similar to Signal recognition particle receptor (docking protein) [Equus caballus] Length = 639 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 89/302 (29%), Positives = 146/302 (48%), Gaps = 41/302 (13%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96 SR + V +++ D LI ++ +A ++ E + K K + + V V + + + L Sbjct: 335 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 394 Query: 97 MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + + +P + RP+V+ GVNGVGK+T + K+S + + G V++AA Sbjct: 395 VQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 454 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSE-------------IGSDAAALAYEAFKQAQAKK 193 DTFR+ A++QL+ A R SA G DAA +A EA A+ + Sbjct: 455 CDTFRAGAVEQLRTHARRLSALHPPENHGGRTMVYLFEKGYGKDAAGIAMEAIAFARNQG 514 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252 DV+++DTAGR+ +N+ LM + K+I V + P VL V +A G A+ Q+ F Sbjct: 515 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 568 Query: 253 -----HAVAGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 H++A T G+++TK D + G I + P+ F+G G+ DL Sbjct: 569 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 628 Query: 303 AK 304 AK Sbjct: 629 AK 630 >gi|160872071|ref|ZP_02062203.1| signal recognition particle protein [Rickettsiella grylli] gi|159120870|gb|EDP46208.1| signal recognition particle protein [Rickettsiella grylli] Length = 451 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 91/311 (29%), Positives = 153/311 (49%), Gaps = 29/311 (9%) Query: 21 FASTSLKLKEGITDIISSRRLDD-GVREELEDL---LIRSDIGVAVAQKIVEEL------ 70 F + + +LK +I RL++ ++E L ++ I +D+ V + I+E++ Sbjct: 2 FDNLTARLKHSFKNIRGQGRLNEHNIKESLREVKKAFIEADVAYPVVKAIIEQVRQGAIG 61 Query: 71 --LTKRYAKDVSVQRVLYDVSELI---HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 +T+ A + +++ D I H + LS + P V+++ G+ G GKT Sbjct: 62 QKVTESLAPGQAFIKIVNDTLTTIMGSHLSELNLS-------AQTPIVMMIAGLQGSGKT 114 Query: 126 TVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 T + KL+ + K V+L + D R AAI QL+ A+ ++ F S + Sbjct: 115 TTVAKLAAWLKTQKNKSVLLTSTDIHRPAAILQLENLAENSNVLFHPSCASQTPTFIVQT 174 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + A+ K VDV+IIDTAGRLH + +M + + V P L VLD+ GQ+ Sbjct: 175 AIQTARNKGVDVVIIDTAGRLHIDDRMMEELRTIHTV------GNPIETLFVLDSMMGQD 228 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A++ + F+ V +G+I++KMD ARGG + + P+ F+G GE + LEPF Sbjct: 229 AVKVAQGFNDVIPLSGIILSKMDADARGGAALSVKFMLGKPIKFIGSGEKVTALEPFYPD 288 Query: 305 DFSAVITGCLD 315 ++ I G D Sbjct: 289 RIASRILGMGD 299 >gi|49471597|gb|AAT66124.1| signal recognition particle [Mycoplasma arthritidis] Length = 401 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 109/204 (53%), Gaps = 9/204 (4%) Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL--KVMLAAGDTFRSAAIDQ 157 + P P I++VG+ G GKTT KL+ L +L D +R AA +Q Sbjct: 88 TNPIEISLKKIPTTIMMVGLQGSGKTTTAAKLATFFKKKKLCQNPLLVGDDIYRPAAREQ 147 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ A +T DF E +DA +A EA K+A + D++I+DTAGRL + LM + Sbjct: 148 LEQLAKQTQTDFFTKE-KNDAIFIAKEAIKRANDNRNDLVIVDTAGRLAIDENLM---DE 203 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 +I + K + P +L V+DA +GQ+ + ++FH + I+TK+D ARGG + Sbjct: 204 LINIKKAIHPD---YILLVVDAMSGQDVINVAKIFHENLNLSATIITKLDSDARGGAALS 260 Query: 278 IVVTHKIPVYFLGVGEGINDLEPF 301 I ++P+ F+G GE ++ +E F Sbjct: 261 ITHLLEVPIAFIGTGEKLSGIEIF 284 >gi|19553259|ref|NP_601261.1| signal recognition particle GTPase [Corynebacterium glutamicum ATCC 13032] gi|62390895|ref|YP_226297.1| Signal recognition particle GTPase [Corynebacterium glutamicum ATCC 13032] gi|21324828|dbj|BAB99451.1| Signal recognition particle GTPase [Corynebacterium glutamicum ATCC 13032] gi|41326234|emb|CAF20396.1| Signal recognition particle GTPase [Corynebacterium glutamicum ATCC 13032] Length = 547 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 83/282 (29%), Positives = 140/282 (49%), Gaps = 26/282 (9%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + V + + + + +VS Q+V+ V+E + ++L ++ + Sbjct: 38 LLEADVSLTVVRAFINRIKERAVGAEVSQALNPAQQVIKIVNEELVQILGGETRRLSL-A 96 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164 + P VI++ G+ G GKTT+ GKLSK + G ML A D R A+ QL+I +R Sbjct: 97 KNPPTVIMLAGLQGAGKTTLAGKLSKHLVKQGHTPMLVACDLQRPGAVQQLQIVGERAGV 156 Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 TS D + E+G+ D +A ++A+ + D++I+DTAGRL + LM Sbjct: 157 TTFAPDPGTSIDSLEHEMGTSHGDPVEVARAGIEEAKRTQHDIVIVDTAGRLGIDETLMT 216 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + + P VL V+D+ GQ+A+ E F TG+++TK+DG ARGG Sbjct: 217 QARNIREAIN------PDEVLFVIDSMIGQDAVDTAEAFRDGVDFTGVVLTKLDGDARGG 270 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F GE ++D + F + ++ I G D Sbjct: 271 AALSIREVTGKPIMFASTGEKLDDFDVFHPERMASRILGMGD 312 >gi|224009369|ref|XP_002293643.1| signal recognition particle-like protein [Thalassiosira pseudonana CCMP1335] gi|220971043|gb|EED89379.1| signal recognition particle-like protein [Thalassiosira pseudonana CCMP1335] Length = 368 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 87/301 (28%), Positives = 144/301 (47%), Gaps = 30/301 (9%) Query: 19 KGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE----ELLTKR 74 +GF S L +T LD +++ ++ LL ++ + AQ I E +LL K+ Sbjct: 71 RGFFSNLLSTNRPLT----KSDLDPPLKQ-MQQLLTSKNVAPSTAQAICEVVERQLLGKK 125 Query: 75 YAKDVSVQR-VLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V+R V + + + + ++L P + P+ I+++G+NGVGK+T + Sbjct: 126 VGTLVGVKRAVRHALEDAVERILCPELGGIGGRAEIKRGKSPYTIVMIGINGVGKSTSLA 185 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 K++ + +LAA DTFRS A++QL + A S D + +A A +A Sbjct: 186 KIAYYLQSNQCNPLLAACDTFRSGAVEQLSVHASCLSLPLYHQGYAKDPSTVAKAAISKA 245 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 DV++IDTAGR+ NN LM + K++ P VL V +A G + + Q+ Sbjct: 246 TEDGNDVVLIDTAGRMQNNVPLMKALAKLVTETN------PDLVLFVCEALVGNDGMDQL 299 Query: 250 EMFHAV---AGTT----GLIMTKMDGTARGGGLIPIVVTH--KIPVYFLGVGEGINDLEP 300 MF G T G+++TK D + G + +TH +P+ F G G+ N L+P Sbjct: 300 TMFQKALTSGGHTRLIDGIVLTKFDTVSDKVG-AALTLTHLTGVPIAFCGTGQKYNHLKP 358 Query: 301 F 301 Sbjct: 359 L 359 >gi|296216603|ref|XP_002754616.1| PREDICTED: signal recognition particle receptor subunit alpha isoform 1 [Callithrix jacchus] Length = 637 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 145/302 (48%), Gaps = 41/302 (13%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96 SR + V +++ D LI ++ +A ++ E + K K + + V V + + + L Sbjct: 333 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 392 Query: 97 MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + + +P + RP+V+ GVNGVGK+T + K+S + + G V++AA Sbjct: 393 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 452 Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193 DTFR+ A++QL+ R SA G DAA +A EA A+ + Sbjct: 453 CDTFRAGAVEQLRTHTRRLSALHPPEKHAGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 512 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252 DV+++DTAGR+ +N+ LM + K+I V + P VL V +A G A+ Q+ F Sbjct: 513 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 566 Query: 253 -----HAVAGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 H++A T G+++TK D + G I + P+ F+G G+ DL Sbjct: 567 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 626 Query: 303 AK 304 AK Sbjct: 627 AK 628 >gi|294889453|ref|XP_002772820.1| signal recognition particle 54 kDa protein 2 [Perkinsus marinus ATCC 50983] gi|239877370|gb|EER04636.1| signal recognition particle 54 kDa protein 2 [Perkinsus marinus ATCC 50983] Length = 508 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 89/317 (28%), Positives = 152/317 (47%), Gaps = 25/317 (7%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 ++S+ S +R L K +S + + E + + + +E+ L+++D+ V K Sbjct: 6 LSSQLTSALRSLQKAASSLNEEDDEPLEECL----------KEIAKALLQADVNVKYVSK 55 Query: 66 IVEELLT--KRYA-----KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118 + + + T K Y + +V+++++D EL+ K+L P P R +V++ VG Sbjct: 56 LRQSIRTQMKLYEGAAINRHKTVRKLVFD--ELV-KLLTPSRAPRTLT-KGRSNVVMFVG 111 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 + G GKTT K + G KV L DTFR+ A DQL+ A + F S +D Sbjct: 112 LQGSGKTTSCTKYALYYQRRGWKVALVCADTFRAGAFDQLRQNATKALIPFYGSHTITDP 171 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 +A E + + ++ D++I+DT+GR H + + K +R + V+ V+D Sbjct: 172 VQVASEGVELFKEERYDLIIVDTSGR-HKQELALFDEMKQVR---QWGSGEADDVIFVMD 227 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 + GQ Q F +I+TK+DG A+GGG + V P+ F+G GE ++D Sbjct: 228 SHIGQACSAQAAAFSNAVDVGSVIITKLDGHAKGGGALSAVAATDSPIIFIGTGEHLDDF 287 Query: 299 EPFVAKDFSAVITGCLD 315 E F K F + G D Sbjct: 288 ERFEVKGFVGRLLGMGD 304 >gi|289662764|ref|ZP_06484345.1| signal recognition particle protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 446 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 83/275 (30%), Positives = 139/275 (50%), Gaps = 22/275 (8%) Query: 39 RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 R ++ +RE E+ L+ +D+ + V Q ++E + + ++V Q ++ V + Sbjct: 9 RLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKIVRD 68 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149 + ++ + N + P +IL+ G+ G GKTT +GKL+K + + K VM+ + D Sbjct: 69 ELTAVMGAAAADLNLNVPA-PAIILMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADV 127 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI+QLK A++ F S+ + A A+ VDVL++DTAGRL ++ Sbjct: 128 YRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDARKSFVDVLLVDTAGRLAIDA 187 Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 +M I + HA P L V+DA TGQ+A + F TG+++TK Sbjct: 188 AMMDEIKAL---------HAAVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKT 238 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 DG ARGG + + P+ F+G GE + L+ F Sbjct: 239 DGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVF 273 >gi|158425575|ref|YP_001526867.1| signal recognition particle protein [Azorhizobium caulinodans ORS 571] gi|158332464|dbj|BAF89949.1| signal recognition particle protein [Azorhizobium caulinodans ORS 571] Length = 511 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 81/274 (29%), Positives = 143/274 (52%), Gaps = 13/274 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKP 102 E+ LI +D+ + V + +++ + +V SV Q V+ V +++ + L + P Sbjct: 33 EVRRALIEADVALDVVRSFTDKVRQRAVGVEVIKSVTPGQMVVKIVHDVLVETLGSDADP 92 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIW 161 + + + P IL+VG+ G GKTT K++K++++ G +V++A+ DT R AA++QL Sbjct: 93 IDLN-APAPVPILMVGLQGSGKTTTTAKIAKRLTERGNRRVLMASLDTRRPAAMEQLATL 151 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 + + + G A +A A A+ DV+I+DTAGR+ + LMA + ++ + Sbjct: 152 GTQVEVNTLPIVPGQSAVQIAKRAMDAARFGNYDVVILDTAGRVTLDEALMAEVAEVKAI 211 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 PH VL V D+ TGQ+A+ + F + TG+++T+ DG RGG + + Sbjct: 212 TN------PHEVLLVADSLTGQDAVNTAKAFDSRVSITGIVLTRADGDGRGGAALSMRAV 265 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ LG GE ++ LE F + + I G D Sbjct: 266 TGKPIKLLGTGEKMDGLEDFDPQRVAGRILGMGD 299 >gi|322385512|ref|ZP_08059156.1| signal recognition particle protein [Streptococcus cristatus ATCC 51100] gi|321270250|gb|EFX53166.1| signal recognition particle protein [Streptococcus cristatus ATCC 51100] Length = 522 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 104/206 (50%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + Sbjct: 101 PTVIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 A + + +QA+A D ++IDTAGRL + LM + ++ L + Sbjct: 161 FALGTEFPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELAD-VKALAQ----- 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P+ +L V+DA GQ A F+ TG+I+TK+DG RGG + + P+ F Sbjct: 215 PNEILLVVDAMIGQEAANVAREFNNQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFT 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I D+E F S I G D Sbjct: 275 GTGEKITDIETFHPDRMSGRILGMGD 300 >gi|301782169|ref|XP_002926499.1| PREDICTED: signal recognition particle receptor subunit alpha-like [Ailuropoda melanoleuca] gi|281338698|gb|EFB14282.1| hypothetical protein PANDA_016150 [Ailuropoda melanoleuca] Length = 638 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 145/302 (48%), Gaps = 41/302 (13%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96 SR + V +++ D LI ++ +A ++ E + K K + + V V + + + L Sbjct: 334 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 393 Query: 97 MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + + +P + RP+V+ GVNGVGK+T + K+S + + G V++AA Sbjct: 394 VQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 453 Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193 DTFR+ A++QL+ R SA G DAA +A EA A+ + Sbjct: 454 CDTFRAGAVEQLRTHTRRLSALHPPENHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 513 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252 DV+++DTAGR+ +N+ LM + K+I V + P VL V +A G A+ Q+ F Sbjct: 514 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 567 Query: 253 -----HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 H++A T G+++TK D + G I + P+ F+G G+ DL Sbjct: 568 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 627 Query: 303 AK 304 AK Sbjct: 628 AK 629 >gi|30866|emb|CAA29608.1| unnamed protein product [Homo sapiens] Length = 638 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 145/302 (48%), Gaps = 41/302 (13%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96 SR + V +++ D LI ++ +A ++ E + K K + + V V + + + L Sbjct: 334 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 393 Query: 97 MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + + +P + RP+V+ GVNGVGK+T + K+S + + G V++AA Sbjct: 394 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 453 Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193 DTFR+ A++QL+ R SA G DAA +A EA A+ + Sbjct: 454 CDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 513 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252 DV+++DTAGR+ +N+ LM + K+I V + P VL V +A G A+ Q+ F Sbjct: 514 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 567 Query: 253 -----HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 H++A T G+++TK D + G I + P+ F+G G+ DL Sbjct: 568 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 627 Query: 303 AK 304 AK Sbjct: 628 AK 629 >gi|58580944|ref|YP_199960.1| signal recognition particle protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425538|gb|AAW74575.1| signal recognition particle protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 494 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 82/275 (29%), Positives = 139/275 (50%), Gaps = 22/275 (8%) Query: 39 RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 R ++ +RE E+ L+ +D+ + V Q ++E + + ++V Q ++ V + Sbjct: 57 RLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKIVRD 116 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149 + ++ + N + P ++L+ G+ G GKTT +GKL+K + + K VM+ + D Sbjct: 117 ELTAVMGAAAADVNLNVPA-PAIVLMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADV 175 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI+QLK A++ F S+ + A A+ VDVL++DTAGRL + Sbjct: 176 YRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDARKSFVDVLLVDTAGRLAIDQ 235 Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 ++M I + HA P L V+DA TGQ+A + F TG+++TK Sbjct: 236 VMMDEIKAL---------HAAVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKT 286 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 DG ARGG + + P+ F+G GE + L+ F Sbjct: 287 DGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVF 321 >gi|311264318|ref|XP_003130105.1| PREDICTED: signal recognition particle receptor subunit alpha-like isoform 2 [Sus scrofa] Length = 610 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 146/302 (48%), Gaps = 41/302 (13%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96 SR + V +++ D LI ++ +A ++ E + +K K + + V V + + + L Sbjct: 306 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVASKLEGKVMGTFSTVTSTVKQALQESL 365 Query: 97 MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + + +P + RP+V+ GVNGVGK+T + K+S + + G V++AA Sbjct: 366 VQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 425 Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193 DTFR+ A++QL+ R SA G DAA +A EA A+ + Sbjct: 426 CDTFRAGAVEQLRTHTRRLSALHPPENHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 485 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252 DV+++DTAGR+ +N+ LM + K+I V + P VL V +A G A+ Q+ F Sbjct: 486 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 539 Query: 253 -----HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 H++A T G+++TK D + G I + P+ F+G G+ DL Sbjct: 540 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 599 Query: 303 AK 304 AK Sbjct: 600 AK 601 >gi|311264316|ref|XP_003130104.1| PREDICTED: signal recognition particle receptor subunit alpha-like isoform 1 [Sus scrofa] Length = 638 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 146/302 (48%), Gaps = 41/302 (13%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96 SR + V +++ D LI ++ +A ++ E + +K K + + V V + + + L Sbjct: 334 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVASKLEGKVMGTFSTVTSTVKQALQESL 393 Query: 97 MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + + +P + RP+V+ GVNGVGK+T + K+S + + G V++AA Sbjct: 394 VQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 453 Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193 DTFR+ A++QL+ R SA G DAA +A EA A+ + Sbjct: 454 CDTFRAGAVEQLRTHTRRLSALHPPENHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 513 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252 DV+++DTAGR+ +N+ LM + K+I V + P VL V +A G A+ Q+ F Sbjct: 514 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 567 Query: 253 -----HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 H++A T G+++TK D + G I + P+ F+G G+ DL Sbjct: 568 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 627 Query: 303 AK 304 AK Sbjct: 628 AK 629 >gi|260578971|ref|ZP_05846874.1| signal recognition particle protein [Corynebacterium jeikeium ATCC 43734] gi|258602945|gb|EEW16219.1| signal recognition particle protein [Corynebacterium jeikeium ATCC 43734] Length = 515 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 87/282 (30%), Positives = 138/282 (48%), Gaps = 26/282 (9%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + V + ++ + + +VS Q+V+ V+E + ++L ++ N Sbjct: 26 LLEADVSLPVVRAFIKRIKERAAGAEVSEALNPAQQVIKIVNEELKEILGGETRRLNL-A 84 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164 H P VI++ G+ G GKTT+ GKL+ ++ G ML A D R A+ QL+I +R Sbjct: 85 KHPPTVIMLAGLQGAGKTTLAGKLALHLAKQGHTPMLVACDLQRPGAVQQLQIVGERAGV 144 Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 TS D E+G+ D +A ++A + D++IIDTAGRL + LM Sbjct: 145 KTFAPDPGTSLDSHDHEMGTSHGDPVDVAQRGIEEAYRSQHDIVIIDTAGRLGIDEELM- 203 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + R ++ D P VL V+DA GQ+A+ E F TG+++TK+DG ARGG Sbjct: 204 ---RQARNIR--DAVEPDEVLFVIDAMIGQDAVTTAEAFRDGVDFTGVVLTKLDGDARGG 258 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F GE D + F + I G D Sbjct: 259 AALSIREVTGKPILFASTGEKQEDFDVFHPDRMANRILGMGD 300 >gi|194382530|dbj|BAG64435.1| unnamed protein product [Homo sapiens] Length = 610 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 145/302 (48%), Gaps = 41/302 (13%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96 SR + V +++ D LI ++ +A ++ E + K K + + V V + + + L Sbjct: 306 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 365 Query: 97 MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + + +P + RP+V+ GVNGVGK+T + K+S + + G V++AA Sbjct: 366 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 425 Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193 DTFR+ A++QL+ R SA G DAA +A EA A+ + Sbjct: 426 CDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 485 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252 DV+++DTAGR+ +N+ LM + K+I V + P VL V +A G A+ Q+ F Sbjct: 486 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 539 Query: 253 -----HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 H++A T G+++TK D + G I + P+ F+G G+ DL Sbjct: 540 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 599 Query: 303 AK 304 AK Sbjct: 600 AK 601 >gi|154503296|ref|ZP_02040356.1| hypothetical protein RUMGNA_01120 [Ruminococcus gnavus ATCC 29149] gi|153795963|gb|EDN78383.1| hypothetical protein RUMGNA_01120 [Ruminococcus gnavus ATCC 29149] Length = 450 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 109/203 (53%), Gaps = 6/203 (2%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 VI++ G+ G GKTT KL+ K G K +L A D +R AAI QL+I ++ + Sbjct: 104 VIMMAGLQGAGKTTTTAKLAGKYKLKGKKPLLVACDVYRPAAIKQLQINGEKQGVEVFSM 163 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 + A +A A + A+ +++I+DTAGRLH + +MA + ++ + H Sbjct: 164 GDKNKPADIAKAALEHARKNGNNIVILDTAGRLHIDEDMMAELQEIKGTVD------VHQ 217 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 + V+DA TGQ+A+ F+ G G+I+TK+DG RGG + I P+ ++G+G Sbjct: 218 TILVVDAMTGQDAVNVAGSFNDKIGIDGVIVTKLDGDTRGGAALSIKAVTGCPILYVGMG 277 Query: 293 EGINDLEPFVAKDFSAVITGCLD 315 E ++DLE F ++ I G D Sbjct: 278 EKLSDLEQFYPDRMASRILGMGD 300 >gi|145296022|ref|YP_001138843.1| hypothetical protein cgR_1945 [Corynebacterium glutamicum R] gi|140845942|dbj|BAF54941.1| hypothetical protein [Corynebacterium glutamicum R] Length = 544 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 83/282 (29%), Positives = 140/282 (49%), Gaps = 26/282 (9%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + V + + + + +VS Q+V+ V+E + ++L ++ + Sbjct: 38 LLEADVSLTVVRAFINRIKERAVGAEVSQALNPAQQVIKIVNEELVQILGGETRRLSL-A 96 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164 + P VI++ G+ G GKTT+ GKLSK + G ML A D R A+ QL+I +R Sbjct: 97 KNPPTVIMLAGLQGAGKTTLAGKLSKHLVKQGHTPMLVACDLQRPGAVQQLQIVGERAGV 156 Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 TS D + E+G+ D +A ++A+ + D++I+DTAGRL + LM Sbjct: 157 TTFAPDPGTSIDSLEHEMGTSHGDPVEVARAGIEEAKRTQHDIVIVDTAGRLGIDETLMT 216 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + + P VL V+D+ GQ+A+ E F TG+++TK+DG ARGG Sbjct: 217 QARNIREAIN------PDEVLFVIDSMIGQDAVDTAEAFRDGVDFTGVVLTKLDGDARGG 270 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F GE ++D + F + ++ I G D Sbjct: 271 AALSIREVTGKPIMFASTGEKLDDFDVFHPERMASRILGMGD 312 >gi|109109214|ref|XP_001112588.1| PREDICTED: signal recognition particle receptor subunit alpha isoform 1 [Macaca mulatta] Length = 638 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 93/323 (28%), Positives = 153/323 (47%), Gaps = 42/323 (13%) Query: 18 TKGFASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 TKG + +G+ S R D + V +++ D LI ++ +A ++ E + K Sbjct: 313 TKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEG 372 Query: 77 KDV-SVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKT 125 K + + V V + + + L+ + +P + RP+V+ GVNGVGK+ Sbjct: 373 KVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKS 432 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-------------DFVCS 172 T + K+S + + G V++AA DTFR+ A++QL+ R SA Sbjct: 433 TNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEK 492 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 G DAA +A EA A+ + DV+++DTAGR+ +N+ LM + K+I V + P Sbjct: 493 GYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDL 546 Query: 233 VLQVLDATTGQNALRQVEMF------HAVAGTT----GLIMTKMDG-TARGGGLIPIVVT 281 VL V +A G A+ Q+ F H++A T G+++TK D + G I + Sbjct: 547 VLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYI 606 Query: 282 HKIPVYFLGVGEGINDLEPFVAK 304 P+ F+G G+ DL AK Sbjct: 607 TSKPIVFVGTGQTYCDLRSLNAK 629 >gi|307108633|gb|EFN56873.1| hypothetical protein CHLNCDRAFT_21935 [Chlorella variabilis] Length = 629 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 82/274 (29%), Positives = 133/274 (48%), Gaps = 29/274 (10%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNW-- 105 L+ L+ ++ +A K+ E + T + + S RV V + + + L + P Sbjct: 349 LKKKLMERNVAEEIADKVTESVATSLEGRKLASFTRVSTAVQQAVEEALTRILTPKRSID 408 Query: 106 --------DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 +P+ I+ VGVNGVGK+T + K++ + G+KVM+AA DTFRS A++Q Sbjct: 409 VLREVKAVQAKGQPYTIVFVGVNGVGKSTNLAKVAYWLLQNGVKVMIAACDTFRSGAVEQ 468 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 LK R D A +A+EA K AQ +DVL++DTAGR+ +N LM + Sbjct: 469 LKTHCARLQVPLYERGYEKDPAKVAFEAAKAAQRSGIDVLLVDTAGRMQDNEPLMRALSN 528 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-----------TGLIMTKM 266 +I + + P VL V +A G +A+ Q+ F+ G+++TK Sbjct: 529 LINL------NQPDLVLFVGEALVGNDAVDQLTKFNQRLADLCPDPTQRHLIDGIVLTKF 582 Query: 267 DG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 D + G + +V T P+ F+G G+ DL+ Sbjct: 583 DTIDDKVGAALSMVYTSGAPIMFVGCGQTYVDLK 616 >gi|256827012|ref|YP_003150971.1| signal recognition particle subunit FFH/SRP54 (srp54) [Cryptobacterium curtum DSM 15641] gi|256583155|gb|ACU94289.1| signal recognition particle subunit FFH/SRP54 (srp54) [Cryptobacterium curtum DSM 15641] Length = 470 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 102/208 (49%), Gaps = 7/208 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P+VI++VG+ G GKTT KL+ + +L A D +R AA DQL+ D Sbjct: 97 SRIPNVIMLVGLQGSGKTTAAAKLAYLLKKRNRNPLLVACDVYRPAAADQLQTLGDEIDV 156 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 E G D A+A E + A DV+I+DTAGRLH + +MA + D Sbjct: 157 RVYRGE-GKDPVAIAREGVQDAIDHLRDVVIVDTAGRLHVDEDMMAEASAI------KDA 209 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+DA TGQ+ + F G+IM+KMDG ARGGG + + P+ Sbjct: 210 VNPDQILMVVDAMTGQDVVNVAAAFAERVDFDGVIMSKMDGDARGGGALSVREVTGKPIK 269 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ GE + LE F + I G D Sbjct: 270 FISAGEKPDSLEEFHPDRLAKRILGMGD 297 >gi|28572459|ref|NP_789239.1| signal recognition particle protein [Tropheryma whipplei TW08/27] gi|28410591|emb|CAD66977.1| signal recognition particle protein [Tropheryma whipplei TW08/27] Length = 446 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 83/272 (30%), Positives = 139/272 (51%), Gaps = 31/272 (11%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSELI-- 92 D V E+ L+ SD+ +AQ V + + +++ V +++++ EL+ Sbjct: 28 DVVLSEVYKTLLDSDVSFEIAQAFVHRVRGRSMSQESLRAINPHKRVTQIVWE--ELVDL 85 Query: 93 ---HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 K + S+ F P +I++VG+ G GKT+ GKL+K + + G L A D Sbjct: 86 LGHQKTALKFSRTF-------PTIIMLVGLQGSGKTSFAGKLAKWLMERGHTAALGACDL 138 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 R AA QL+ A++ A + + G+ A+ K A+ K+ VLIIDTAGR++ +S Sbjct: 139 QRPAAASQLQAVAEQAGASVLIPKSGNVLDAVKT-VVKTAREKQFSVLIIDTAGRMNADS 197 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 +M + ++ R+ K PH L V+D+ TGQ AL +F TG++M+K+D Sbjct: 198 DMMDQLSEIDRLAK------PHQTLLVVDSATGQEALNITRVFCQHLSVTGVVMSKLDSD 251 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + G + V+ P+ F +GEG++DLE F Sbjct: 252 VKAGAALS--VSSLRPIIFSCIGEGVDDLEQF 281 >gi|269795670|ref|YP_003315125.1| signal recognition particle subunit FFH/SRP54 (srp54) [Sanguibacter keddieii DSM 10542] gi|269097855|gb|ACZ22291.1| signal recognition particle subunit FFH/SRP54 (srp54) [Sanguibacter keddieii DSM 10542] Length = 527 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 91/319 (28%), Positives = 152/319 (47%), Gaps = 31/319 (9%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 FA+ S +L ++ + RL D E+ L+ +D+ V V ++ + + + Sbjct: 2 FATLSDRLTSTFKNLRTKGRLSEADIDATVREIRRALLDADVAVPVVREFTGTVRERALS 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L S+ N + P VI++ G+ G GKTT+ GKL Sbjct: 62 AEVSGALNPAQQVVKIVNEELVAILGGESRGLNL-AKNPPTVIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS------------DAA 179 + + G +L A D R A+ QLK+ +R + G+ D Sbjct: 121 ALNLRQQGHTPLLVAADLQRPNAVTQLKVVGERAGVPVYAPDAGNQGAEGQSGVSTGDPV 180 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 +A + A++++ DV+IIDTAGRL ++ LM IR D +P +L V+DA Sbjct: 181 TVARAGVETARSRQHDVVIIDTAGRLGVDAELMQQAAD-IR-----DATSPDEILFVIDA 234 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 GQ+A+ + F TG++++K+DG ARGG + + P+ F GE + D E Sbjct: 235 MIGQDAVATAQAFAEGVSFTGVVLSKLDGDARGGAALSVARVTGQPILFASTGEKLTDFE 294 Query: 300 PFVAKDFSAVITGCLDYGE 318 F ++ I LD G+ Sbjct: 295 VFHPDRMASRI---LDMGD 310 >gi|241764099|ref|ZP_04762136.1| signal recognition particle protein [Acidovorax delafieldii 2AN] gi|241366563|gb|EER61051.1| signal recognition particle protein [Acidovorax delafieldii 2AN] Length = 458 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 108/209 (51%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166 + P VIL+ G+ G GKTT KL+K + + K V+ +GD +R AAI+QLK + Sbjct: 97 AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRRKKVLTVSGDVYRPAAIEQLKTVTSQAG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 A++ S +A A A+ DVL++DTAGRL + +LM I + L Sbjct: 157 AEWFPSTPDQKPHDIAVAALDYARKHYFDVLLVDTAGRLAIDEVLMQEIKDLHATLN--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA GQ+A+ + F TG+++TK+DG +RGG + + P+ Sbjct: 214 ---PVETLFVVDAMQGQDAINTAKAFKEALPLTGIVLTKLDGDSRGGAALSVRQITGAPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F GV E ++ LE F A+ + I G D Sbjct: 271 KFAGVSEKLDGLEVFDAERHAGRILGMGD 299 >gi|291383611|ref|XP_002708642.1| PREDICTED: signal recognition particle receptor [Oryctolagus cuniculus] Length = 637 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 93/323 (28%), Positives = 153/323 (47%), Gaps = 42/323 (13%) Query: 18 TKGFASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 TKG + +G+ S R D + V +++ D LI ++ +A ++ E + K Sbjct: 312 TKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEG 371 Query: 77 KDV-SVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKT 125 K + + V V + + + L+ + +P + RP+V+ GVNGVGK+ Sbjct: 372 KVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKS 431 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-------------DFVCS 172 T + K+S + + G V++AA DTFR+ A++QL+ R SA Sbjct: 432 TNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEK 491 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 G DAA +A EA A+ + DV+++DTAGR+ +N+ LM + K+I V + P Sbjct: 492 GYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDL 545 Query: 233 VLQVLDATTGQNALRQVEMF------HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVT 281 VL V +A G A+ Q+ F H++A T G+++TK D + G I + Sbjct: 546 VLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYI 605 Query: 282 HKIPVYFLGVGEGINDLEPFVAK 304 P+ F+G G+ DL AK Sbjct: 606 TSKPIVFVGTGQTYCDLRSLNAK 628 >gi|68536272|ref|YP_250977.1| signal recognition particle protein [Corynebacterium jeikeium K411] gi|68263871|emb|CAI37359.1| signal recognition particle protein [Corynebacterium jeikeium K411] Length = 532 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 87/282 (30%), Positives = 138/282 (48%), Gaps = 26/282 (9%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + V + ++ + + +VS Q+V+ V+E + ++L ++ N Sbjct: 38 LLEADVSLPVVRAFIKRIKERAAGAEVSEALNPAQQVIKIVNEELKEILGGETRRLNL-A 96 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164 H P VI++ G+ G GKTT+ GKL+ ++ G ML A D R A+ QL+I +R Sbjct: 97 KHPPTVIMLAGLQGAGKTTLAGKLALHLAKQGHTPMLVACDLQRPGAVQQLQIVGERAGV 156 Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 TS D E+G+ D +A ++A + D++IIDTAGRL + LM Sbjct: 157 KTFAPDPGTSLDSHDHEMGTSHGDPVDVAQRGIEEAYRSQHDIVIIDTAGRLGIDEELM- 215 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + R ++ D P VL V+DA GQ+A+ E F TG+++TK+DG ARGG Sbjct: 216 ---RQARNIR--DAVEPDEVLFVIDAMIGQDAVTTAEAFRDGVDFTGVVLTKLDGDARGG 270 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F GE D + F + I G D Sbjct: 271 AALSIREVTGKPILFASTGEKQEDFDIFHPDRMANRILGMGD 312 >gi|332361212|gb|EGJ39016.1| signal recognition particle protein [Streptococcus sanguinis SK1056] Length = 524 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFSGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QA+A D ++IDTAGRL + LM + ++ L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F++ TG+I+TK+DG RGG + + P+ Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|328541720|ref|YP_004301829.1| 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA, ffh family [polymorphum gilvum SL003B-26A1] gi|326411472|gb|ADZ68535.1| 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA, ffh family [Polymorphum gilvum SL003B-26A1] Length = 520 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 91/306 (29%), Positives = 155/306 (50%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL--DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75 F S S +L GI D ++ R + V E L ++ LI +D+ + V + +++ + Sbjct: 2 FESLSDRL-SGILDKLTGRGALSESDVNEALREVRRALIEADVALPVVRSFTDKVRVRAV 60 Query: 76 AKDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +V SV Q V+ V + + +ML ++P + + + P I++VG+ G GKTT K Sbjct: 61 GAEVVKSVTPGQMVVKIVHDQLVEMLGADAEPIDLN-APAPVAIMMVGLQGSGKTTTTAK 119 Query: 131 LSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 ++++++ +V++A+ DT R AA +QLK+ ++ D + G +A A + A Sbjct: 120 IARRLATRDKRRVLMASLDTRRPAAQEQLKVLGEQNGIDTLPIVAGQGPVDIARRAIQAA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DV+++DTAGR+H + LM + ++ PH +L V DA TGQ+A+ Sbjct: 180 RLGGYDVVMLDTAGRIHIDEALMHEMAEIKAATN------PHEILLVADALTGQDAVNLA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 F G TG+ +T+MDG RGG + + PV +G GE LE F + + Sbjct: 234 TSFDERVGITGIALTRMDGDGRGGAALSMRAVTGKPVKIIGTGEKAEALEDFHPRRIADR 293 Query: 310 ITGCLD 315 I G D Sbjct: 294 ILGMGD 299 >gi|119588088|gb|EAW67684.1| signal recognition particle receptor ('docking protein'), isoform CRA_a [Homo sapiens] gi|119588089|gb|EAW67685.1| signal recognition particle receptor ('docking protein'), isoform CRA_a [Homo sapiens] Length = 414 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 94/329 (28%), Positives = 155/329 (47%), Gaps = 42/329 (12%) Query: 18 TKGFASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 TKG + +G+ S R D + V +++ D LI ++ +A ++ E + K Sbjct: 89 TKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEG 148 Query: 77 KDV-SVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKT 125 K + + V V + + + L+ + +P + RP+V+ GVNGVGK+ Sbjct: 149 KVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKS 208 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-------------DFVCS 172 T + K+S + + G V++AA DTFR+ A++QL+ R SA Sbjct: 209 TNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEK 268 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 G DAA +A EA A+ + DV+++DTAGR+ +N+ LM + K+I V + P Sbjct: 269 GYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDL 322 Query: 233 VLQVLDATTGQNALRQVEMF------HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVT 281 VL V +A G A+ Q+ F H++A T G+++TK D + G I + Sbjct: 323 VLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYI 382 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 P+ F+G G+ DL AK A + Sbjct: 383 TSKPIVFVGTGQTYCDLRSLNAKAVVAAL 411 >gi|23308697|ref|NP_003130.2| signal recognition particle receptor subunit alpha isoform 1 [Homo sapiens] gi|20455516|sp|P08240|SRPR_HUMAN RecName: Full=Signal recognition particle receptor subunit alpha; Short=SR-alpha; AltName: Full=Docking protein alpha; Short=DP-alpha gi|12654649|gb|AAH01162.1| Signal recognition particle receptor (docking protein) [Homo sapiens] gi|14318624|gb|AAH09110.1| Signal recognition particle receptor (docking protein) [Homo sapiens] gi|15488908|gb|AAH13583.1| Signal recognition particle receptor (docking protein) [Homo sapiens] gi|119588090|gb|EAW67686.1| signal recognition particle receptor ('docking protein'), isoform CRA_b [Homo sapiens] gi|123981146|gb|ABM82402.1| signal recognition particle receptor ('docking protein') [synthetic construct] gi|123995977|gb|ABM85590.1| signal recognition particle receptor ('docking protein') [synthetic construct] gi|168277846|dbj|BAG10901.1| signal recognition particle receptor subunit alpha [synthetic construct] gi|189065456|dbj|BAG35295.1| unnamed protein product [Homo sapiens] Length = 638 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 145/302 (48%), Gaps = 41/302 (13%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96 SR + V +++ D LI ++ +A ++ E + K K + + V V + + + L Sbjct: 334 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 393 Query: 97 MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + + +P + RP+V+ GVNGVGK+T + K+S + + G V++AA Sbjct: 394 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 453 Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193 DTFR+ A++QL+ R SA G DAA +A EA A+ + Sbjct: 454 CDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 513 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252 DV+++DTAGR+ +N+ LM + K+I V + P VL V +A G A+ Q+ F Sbjct: 514 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 567 Query: 253 -----HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 H++A T G+++TK D + G I + P+ F+G G+ DL Sbjct: 568 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 627 Query: 303 AK 304 AK Sbjct: 628 AK 629 >gi|188578077|ref|YP_001915006.1| signal recognition particle protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522529|gb|ACD60474.1| signal recognition particle protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 460 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 82/275 (29%), Positives = 139/275 (50%), Gaps = 22/275 (8%) Query: 39 RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 R ++ +RE E+ L+ +D+ + V Q ++E + + ++V Q ++ V + Sbjct: 23 RLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKIVRD 82 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149 + ++ + N + P ++L+ G+ G GKTT +GKL+K + + K VM+ + D Sbjct: 83 ELTAVMGAAAADVNLNVPA-PAIVLMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADV 141 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI+QLK A++ F S+ + A A+ VDVL++DTAGRL + Sbjct: 142 YRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDARKSFVDVLLVDTAGRLAIDQ 201 Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 ++M I + HA P L V+DA TGQ+A + F TG+++TK Sbjct: 202 VMMDEIKAL---------HAAVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKT 252 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 DG ARGG + + P+ F+G GE + L+ F Sbjct: 253 DGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVF 287 >gi|115476922|ref|NP_001062057.1| Os08g0480100 [Oryza sativa Japonica Group] gi|42408581|dbj|BAD09758.1| putative signal recognition particle receptor [Oryza sativa Japonica Group] gi|42409015|dbj|BAD10268.1| putative signal recognition particle receptor [Oryza sativa Japonica Group] gi|113624026|dbj|BAF23971.1| Os08g0480100 [Oryza sativa Japonica Group] gi|125561923|gb|EAZ07371.1| hypothetical protein OsI_29622 [Oryza sativa Indica Group] gi|215678702|dbj|BAG95139.1| unnamed protein product [Oryza sativa Japonica Group] Length = 624 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 85/278 (30%), Positives = 137/278 (49%), Gaps = 28/278 (10%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFN--- 104 L+D L+ ++ +A+K+ E + K + S R+ V + + L+ + P Sbjct: 345 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSID 404 Query: 105 -------WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 +P+VI+ VGVNGVGK+T + K++ + L V LAA DTFRS A++Q Sbjct: 405 ILRDVHAAKERGKPYVIVFVGVNGVGKSTNLAKVAYWLLQHNLSVSLAACDTFRSGAVEQ 464 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ A R D A +A EA ++A K DV+++DTAGR+ +N LM + K Sbjct: 465 LRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSK 524 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-------AVAGTT---GLIMTKMD 267 +I + ++P VL V +A G +A+ Q+ F+ AV T G+++TK D Sbjct: 525 LINL------NSPDLVLFVGEALVGNDAVDQLTKFNQKLADLSAVPTTRLIDGILLTKFD 578 Query: 268 G-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 + G + +V PV F+G G+ DL+ K Sbjct: 579 TIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVK 616 >gi|23007753|ref|ZP_00049485.1| COG0541: Signal recognition particle GTPase [Magnetospirillum magnetotacticum MS-1] Length = 358 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 70/203 (34%), Positives = 110/203 (54%), Gaps = 7/203 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P IL+VG+ G GKTT K+++++S +V+LA+ DT R AA++QL + A + + Sbjct: 95 PVAILMVGLQGSGKTTTTAKIARRLSSRDKRRVLLASLDTRRPAAMEQLAVLAKQVEVES 154 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G A +A A + A+ DV+++DTAGR + LM ++ K Sbjct: 155 LPIVAGQSAVQIAKRAMEAARLGGFDVVMLDTAGRTTVDEGLMNEAAEVKAATK------ 208 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH VL V DA TGQ+A+ F G TG+++T+MDG +RGG + + P+ + Sbjct: 209 PHEVLLVADALTGQDAVNTARAFDQRLGVTGIVLTRMDGDSRGGAALSMRAVTGKPIKLV 268 Query: 290 GVGEGINDLEPFVAKDFSAVITG 312 GVGE ++ LE F + + I G Sbjct: 269 GVGEKVDALEEFHPQRVANRILG 291 >gi|295424842|ref|NP_001171313.1| signal recognition particle receptor subunit alpha isoform 2 [Homo sapiens] Length = 610 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 145/302 (48%), Gaps = 41/302 (13%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96 SR + V +++ D LI ++ +A ++ E + K K + + V V + + + L Sbjct: 306 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 365 Query: 97 MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + + +P + RP+V+ GVNGVGK+T + K+S + + G V++AA Sbjct: 366 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 425 Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193 DTFR+ A++QL+ R SA G DAA +A EA A+ + Sbjct: 426 CDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 485 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252 DV+++DTAGR+ +N+ LM + K+I V + P VL V +A G A+ Q+ F Sbjct: 486 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 539 Query: 253 -----HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 H++A T G+++TK D + G I + P+ F+G G+ DL Sbjct: 540 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 599 Query: 303 AK 304 AK Sbjct: 600 AK 601 >gi|116254274|ref|YP_770112.1| signal recognition particle protein (fifty-four homolog) [Rhizobium leguminosarum bv. viciae 3841] gi|115258922|emb|CAK10031.1| putative signal recognition particle protein (fifty-four homolog) [Rhizobium leguminosarum bv. viciae 3841] Length = 528 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 113/206 (54%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT K++ ++S KV++A+ DT R AA +QL+ + + D Sbjct: 100 PVVVMMVGLQGSGKTTTSAKIAHRLSTREKKKVLMASLDTRRPAAQEQLRQLGAQANIDT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ DV+I+DTAGR H + LM +M + KR +PH Sbjct: 160 LPIISGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMV---EMADIKKRSNPH- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +L V D+ TGQ+A+ F G TGL++T+MDG RGG + + P+ + Sbjct: 216 --EILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE +++LE F + + I G D Sbjct: 274 GVGEKMSELEEFHPRRIADRILGMGD 299 >gi|222640745|gb|EEE68877.1| hypothetical protein OsJ_27689 [Oryza sativa Japonica Group] Length = 1103 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 91/324 (28%), Positives = 150/324 (46%), Gaps = 38/324 (11%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62 N + + W + K A ++ K I + + L+D L+ ++ + Sbjct: 788 NSGASQKKKGWFSSMFKSIAGNNVLEKSDIQPALKA----------LKDRLMTKNVAEEI 837 Query: 63 AQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRP 111 A+K+ E + K + S R+ V + + L+ + P +P Sbjct: 838 AEKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVHAAKERGKP 897 Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 +VI+ VGVNGVGK+T + K++ + L V LAA DTFRS A++QL+ A R Sbjct: 898 YVIVFVGVNGVGKSTNLAKVAYWLLQHNLSVSLAACDTFRSGAVEQLRTHARRLQIPIFE 957 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 D A +A EA ++A K DV+++DTAGR+ +N LM + K+I + ++P Sbjct: 958 KGYEKDPAVVAKEAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSKLINL------NSPD 1011 Query: 232 SVLQVLDATTGQNALRQVEMFH-------AVAGTT---GLIMTKMDG-TARGGGLIPIVV 280 VL V +A G +A+ Q+ F+ AV T G+++TK D + G + +V Sbjct: 1012 LVLFVGEALVGNDAVDQLTKFNQKLADLSAVPTTRLIDGILLTKFDTIDDKVGAALSMVY 1071 Query: 281 THKIPVYFLGVGEGINDLEPFVAK 304 PV F+G G+ DL+ K Sbjct: 1072 ISGAPVMFVGCGQSYTDLKKLNVK 1095 >gi|168029678|ref|XP_001767352.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681416|gb|EDQ67843.1| predicted protein [Physcomitrella patens subsp. patens] Length = 591 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 17/206 (8%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 RP+ I+ VGVNGVGK+T + K++ + +KVM+AA DTFRS A++QL+ A R Sbjct: 384 RPYTIVFVGVNGVGKSTNLAKVAYWLQQHDIKVMMAACDTFRSGAVEQLRTHARRLQIPI 443 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 D A +A +A ++ K DV++IDTAGR+ +N LM + K+I + + Sbjct: 444 FQRGYERDPAVVARDAIYDSKRTKQDVVLIDTAGRMQDNEPLMRALSKLINM------NG 497 Query: 230 PHSVLQVLDATTGQNALRQVEMFH----------AVAGTTGLIMTKMD-GTARGGGLIPI 278 P VL V +A G + + Q+ F+ G+++TK D + G + + Sbjct: 498 PDLVLFVGEALVGNDGVHQLTQFNQKLADLSTSSQTQSIDGILLTKFDTNNDKVGAALSM 557 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAK 304 V T PV F+G G+ DL+ K Sbjct: 558 VYTSGAPVMFVGCGQNYTDLKKLNVK 583 >gi|157828091|ref|YP_001494333.1| signal recognition particle protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932791|ref|YP_001649580.1| signal recognition particle protein [Rickettsia rickettsii str. Iowa] gi|157800572|gb|ABV75825.1| signal recognition particle protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907878|gb|ABY72174.1| signal recognition particle, subunit FFH/SRP54 [Rickettsia rickettsii str. Iowa] Length = 449 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 150/290 (51%), Gaps = 16/290 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89 I++ ++D +R+ + L+ SD+ + V + + E+ K ++V SV Q ++ + Sbjct: 21 ILTEAQIDVAMRD-IRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIH 79 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 E + +L + + +P V L+VG+ G GKTT GKL+ ++ + KV+L + D Sbjct: 80 EEMINLLASSKSETKLNLNSKPPVNFLMVGLQGSGKTTASGKLALRLRNQNKKVLLVSLD 139 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 T+R AA +QL I A+ + + G + A +A+ DV+I DTAGR + Sbjct: 140 TYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAIAEAKISAYDVVIYDTAGRTQID 199 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 +M + ++++ P L V+D+ TGQ+A+ F+ +GLI++++DG Sbjct: 200 KAMMEEALAIKKIVE------PTETLLVIDSMTGQDAVVTASSFNEKLAISGLILSRIDG 253 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 ++GG + + K P+ FL GE + DLE F A+ ++ I LD G+ Sbjct: 254 DSKGGAALSVKYITKKPIKFLSSGENLIDLEEFDAERLASRI---LDMGD 300 >gi|294627001|ref|ZP_06705591.1| signal recognition particle protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598663|gb|EFF42810.1| signal recognition particle protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 458 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 81/275 (29%), Positives = 140/275 (50%), Gaps = 22/275 (8%) Query: 39 RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 R ++ +RE + ++ L+ +D+ + V Q ++E + + ++V Q ++ V + Sbjct: 21 RLTEENIREAIREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKVVRD 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149 + ++ + N + P ++L+ G+ G GKTT +GKL+K + + K VM+ + D Sbjct: 81 ELTAVMGAAATDLNLNVPA-PAIVLMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADI 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI+QLK A++ F S+ + A A+ VDVL++DTAGRL ++ Sbjct: 140 YRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDARKSFVDVLLVDTAGRLAIDA 199 Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 +M I + HA P L V+DA TGQ+A + F TG+++TK Sbjct: 200 AMMDEIKAL---------HAAVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKT 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 DG ARGG + + P+ F+G GE + L+ F Sbjct: 251 DGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVF 285 >gi|157414996|ref|YP_001482252.1| signal recognition particle protein [Campylobacter jejuni subsp. jejuni 81116] gi|157385960|gb|ABV52275.1| signal recognition particle protein [Campylobacter jejuni subsp. jejuni 81116] gi|307747634|gb|ADN90904.1| Signal recognition particle protein [Campylobacter jejuni subsp. jejuni M1] gi|315931910|gb|EFV10865.1| signal recognition particle protein [Campylobacter jejuni subsp. jejuni 327] Length = 445 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 70/205 (34%), Positives = 108/205 (52%), Gaps = 6/205 (2%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P V+L+ G+ G GKTT KL+ + KV++AA D R AA++QL+ + Sbjct: 92 SKPPTVVLMAGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEI 151 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + E D +A EA K+A++ VDVL++DTAGRL + LM + + VL Sbjct: 152 ELFFIENEKDPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMNELKAVKDVLN---- 207 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V DA +GQ+ ++ F+ +G+I++K D +GG + I IP+ Sbjct: 208 --PDEIFYVADAMSGQDGVKTAASFNEALNISGVILSKFDADTKGGVALGIAKQIGIPLR 265 Query: 288 FLGVGEGINDLEPFVAKDFSAVITG 312 F+GVGE + DLE F+ + I G Sbjct: 266 FIGVGEKVADLEVFIPDRIVSRIMG 290 >gi|296536512|ref|ZP_06898602.1| signal recognition particle protein [Roseomonas cervicalis ATCC 49957] gi|296263168|gb|EFH09703.1| signal recognition particle protein [Roseomonas cervicalis ATCC 49957] Length = 461 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 93/311 (29%), Positives = 158/311 (50%), Gaps = 24/311 (7%) Query: 21 FASTSLKLKEGITDIISSRR--LDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75 F + S KL G+ D + R +D V E L ++ L+ +D+ + V + +V ++ + Sbjct: 2 FEALSGKLN-GVFDRLRRRGALTEDNVNEALREVRIALLEADVALPVVKDLVNKVRERAV 60 Query: 76 AKDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 ++V Q+V+ V++ + + L + + N + + P IL++G+ G GKT Sbjct: 61 GQEVIRSVSPAQQVIKIVNDCLVEALGGGEGVEQTPGLNLNAAA-PIAILMIGLQGSGKT 119 Query: 126 TVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 T GK++ ++ + KV+LA+ D R AA QL+ A + + G +A Sbjct: 120 TTSGKIALRLRARDKKKVLLASLDVHRPAAQLQLETLAKQAGVASLPIIQGQTPLQIAAR 179 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + A+ + DV+I+DTAGRL + LMA + ++ K PH L V+DA TGQ+ Sbjct: 180 AMQVARGELYDVVILDTAGRLSIDEALMAEVAEVKAATK------PHESLLVVDAMTGQD 233 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ +F+ G TG++MT++DG ARGG + + P+ LG GE ++ LE F Sbjct: 234 AVNTARIFNERVGLTGIVMTRVDGDARGGAALSMRAVTGAPIKLLGAGEKLDALEDFHPD 293 Query: 305 DFSAVITGCLD 315 + I G D Sbjct: 294 RIAGRILGMGD 304 >gi|84622872|ref|YP_450244.1| signal recognition particle protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366812|dbj|BAE67970.1| signal recognition particle protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 458 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 82/275 (29%), Positives = 139/275 (50%), Gaps = 22/275 (8%) Query: 39 RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 R ++ +RE E+ L+ +D+ + V Q ++E + + ++V Q ++ V + Sbjct: 21 RLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKIVRD 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149 + ++ + N + P ++L+ G+ G GKTT +GKL+K + + K VM+ + D Sbjct: 81 ELTAVMGAAAADVNLNVPA-PAIVLMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADV 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI+QLK A++ F S+ + A A+ VDVL++DTAGRL + Sbjct: 140 YRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDARKSFVDVLLVDTAGRLAIDQ 199 Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 ++M I + HA P L V+DA TGQ+A + F TG+++TK Sbjct: 200 VMMDEIKAL---------HAAVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKT 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 DG ARGG + + P+ F+G GE + L+ F Sbjct: 251 DGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVF 285 >gi|296216605|ref|XP_002754617.1| PREDICTED: signal recognition particle receptor subunit alpha isoform 2 [Callithrix jacchus] Length = 609 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 145/302 (48%), Gaps = 41/302 (13%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96 SR + V +++ D LI ++ +A ++ E + K K + + V V + + + L Sbjct: 305 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 364 Query: 97 MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + + +P + RP+V+ GVNGVGK+T + K+S + + G V++AA Sbjct: 365 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 424 Query: 147 GDTFRSAAIDQLKI-------------WADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 DTFR+ A++QL+ A RT G DAA +A EA A+ + Sbjct: 425 CDTFRAGAVEQLRTHTRRLSALHPPEKHAGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 484 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252 DV+++DTAGR+ +N+ LM + K+I V + P VL V +A G A+ Q+ F Sbjct: 485 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 538 Query: 253 -----HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 H++A T G+++TK D + G I + P+ F+G G+ DL Sbjct: 539 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 598 Query: 303 AK 304 AK Sbjct: 599 AK 600 >gi|242009196|ref|XP_002425377.1| Signal recognition particle 54 kDa protein, putative [Pediculus humanus corporis] gi|212509171|gb|EEB12639.1| Signal recognition particle 54 kDa protein, putative [Pediculus humanus corporis] Length = 501 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 102/206 (49%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P++I+ VG+ G GKTT KL+ K L DTFR+ A DQLK A + F Sbjct: 95 KPNIIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPF 154 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D +A + + + + +++I+DT+GR L + ++ +K Sbjct: 155 YGSYTEVDPVVIAQDGVEMFKKEGFEIIIVDTSGRHKQEESLFEEMLQVSNAIK------ 208 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P +++ V+DAT GQ Q F +I+TK+DG A+GGG + V P+ F+ Sbjct: 209 PDNIIFVMDATIGQACESQARAFKEKVNVGSVIITKLDGHAKGGGALSAVAATNSPIIFI 268 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D E F K F + + G D Sbjct: 269 GTGEHIDDFESFKTKPFISKLLGMGD 294 >gi|315638652|ref|ZP_07893826.1| signal recognition particle protein [Campylobacter upsaliensis JV21] gi|315481276|gb|EFU71906.1| signal recognition particle protein [Campylobacter upsaliensis JV21] Length = 445 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 138/257 (53%), Gaps = 7/257 (2%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 E L+ L+++D+ V ++++ + + ++ L + + + ++L K + Sbjct: 30 ETLKKSLLKADVHHKVTKELLSLIEDDVKKNGIGQKQFLEAIKKNLEEILSISGKNQGFI 89 Query: 107 FSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 FS +P ++L+VG+ G GKTT KL+ + KV++AA D R AA++QL+ + Sbjct: 90 FSSKPPTIVLMVGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEAN 149 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + E ++ +A EA ++A++ DVL++DTAGRL + LM G++ V L Sbjct: 150 EIELFYIENETNPIKVAGEALQKAKSGLFDVLLVDTAGRLAIDEALM---GELKEVKASL 206 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 + P + V DA +GQ+ ++ F+ G +G+I++K D +GG + I IP Sbjct: 207 N---PDEIFYVADAMSGQDGVKTASSFNEALGLSGVILSKFDADTKGGVALGIARQVNIP 263 Query: 286 VYFLGVGEGINDLEPFV 302 + F+GVGE + DLE F+ Sbjct: 264 LRFIGVGEKVADLEIFI 280 >gi|328874643|gb|EGG23008.1| signal recognition particle 54 kDa subunit [Dictyostelium fasciculatum] Length = 502 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 82/276 (29%), Positives = 141/276 (51%), Gaps = 16/276 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYDV--SELIHKMLMPLS 100 +E+ + L R+D+ +++ K+ + + + + A ++ +R++ V ELI K+L P Sbjct: 33 KEVGNALSRADVSMSLIIKMRKNIQAQIKLDQMAAGLNKRRIIRKVVFDELI-KLLDPGV 91 Query: 101 KPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 P W + + ++I+ VG+ G GKTT + KL+ G + DTFR+ A QL+ Sbjct: 92 TP--WKPTKGKSNIIMFVGLQGAGKTTSVTKLAHFYKRKGWNTAMVCADTFRAGAFAQLQ 149 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 A + F SE D A A + + + + +++I+DT+GR S L + ++ Sbjct: 150 HNATKAKIPFYGSESEKDPVAAAKKGVEIFRKEGAEIIIVDTSGRHKQESELFKEMSEIE 209 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 V++ P +V+ V+D++ GQ A Q F +I+TKMDG ++GGG I V Sbjct: 210 TVIQ------PDNVIFVMDSSIGQAAYDQAMAFKTSVKVGSVIITKMDGNSKGGGAISAV 263 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + P+ F+G GE I DLE F F + + G D Sbjct: 264 AATQSPIIFIGSGEHIPDLEIFNPTSFVSKLLGLGD 299 >gi|296876507|ref|ZP_06900558.1| signal recognition particle protein [Streptococcus parasanguinis ATCC 15912] gi|296432500|gb|EFH18296.1| signal recognition particle protein [Streptococcus parasanguinis ATCC 15912] Length = 523 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 105/206 (50%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + + Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLVKEEKARPLMIAADIYRPAAIDQLKTLGQQINVPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 A + + +QA+A D ++IDTAGRL + LM + R +K L Sbjct: 161 FSLGTEVPAVEIVRQGLEQARANHNDYVLIDTAGRLQIDEKLMGEL----RDVKAL--VE 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P+ +L V+DA GQ A F+ TG+I+TK+DG RGG + + P+ F Sbjct: 215 PNEILLVVDAMIGQEAANVAREFNEQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFT 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I D+E F S I G D Sbjct: 275 GTGEKITDIETFHPDRMSGRILGMGD 300 >gi|327470046|gb|EGF15510.1| signal recognition particle protein [Streptococcus sanguinis SK330] Length = 524 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 109/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QA+A D ++IDTAGRL + LM + + + Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSDVKSLAN---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F++ TG+I+TK+DG RGG + + P+ Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|327334314|gb|EGE76028.1| signal recognition particle protein [Propionibacterium acnes HL097PA1] Length = 528 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 80/284 (28%), Positives = 144/284 (50%), Gaps = 18/284 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D ++ L+ +D+ ++V ++ V + + + +++S Q+++ V+E + ++L Sbjct: 28 DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + P ++++ G+ G GKTT+ GKL++ + G +LAA D R A+ Q Sbjct: 88 GQTRTVRFAKTP-PTIVMLAGLQGAGKTTLAGKLARWFKEEGHSPLLAACDLQRPNAVTQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L++ +R E G+ D +A +A +A+ K DV+IIDTAGRL ++ +MA Sbjct: 147 LQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAEAEHKLYDVVIIDTAGRLGVDAEMMAQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + P L V+DA GQ+A+ F G G+++TK+DG ARGG Sbjct: 207 AADIKTATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFDGVVLTKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + I P+ F GEG+ D + F ++ I LD G+ Sbjct: 261 ALSIARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301 >gi|314919228|gb|EFS83059.1| signal recognition particle protein [Propionibacterium acnes HL050PA1] Length = 528 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 80/284 (28%), Positives = 144/284 (50%), Gaps = 18/284 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D ++ L+ +D+ ++V ++ V + + + +++S Q+++ V+E + ++L Sbjct: 28 DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + P ++++ G+ G GKTT+ GKL++ + G +LAA D R A+ Q Sbjct: 88 GQTRTVRFAKTP-PTIVMLAGLQGAGKTTLAGKLARWFKEEGHSPLLAACDLQRPNAVTQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L++ +R E G+ D +A +A +A+ K DV+IIDTAGRL ++ +MA Sbjct: 147 LQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAEAEHKVYDVVIIDTAGRLGVDAEMMAQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + P L V+DA GQ+A+ F G G+++TK+DG ARGG Sbjct: 207 AADIKTATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFDGVVLTKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + I P+ F GEG+ D + F ++ I LD G+ Sbjct: 261 ALSIARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301 >gi|322380662|ref|ZP_08054814.1| signal recognition particle protein [Helicobacter suis HS5] gi|321146984|gb|EFX41732.1| signal recognition particle protein [Helicobacter suis HS5] Length = 444 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 80/271 (29%), Positives = 141/271 (52%), Gaps = 11/271 (4%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMP-LSKPFN 104 EEL+ L+R+D+ V +++V+ + K AK + Q+ + E L+ + +P S F Sbjct: 30 EELKKALLRNDVHHKVVKELVKNIEAKTKAKGIGKQQFFDALQESLLEILSVPGCSSGFV 89 Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 + + P ++L+ G+ G GKTT KL+ + KV+L A D R AA++QL++ + Sbjct: 90 YAPTP-PTIVLMCGLQGGGKTTTCAKLAHYLKTRHKKVLLVACDLERLAAVEQLQVLGTQ 148 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + E +A A ++A+ + DV+I+D+AGRL + LM + + ++K Sbjct: 149 IGVEVFYQE--GQILEIAKGALERAKEGQFDVVIVDSAGRLAIDQNLMQELKALKDLIK- 205 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P V DA +GQ+ +R FH G +G++++K D ++GG + I +I Sbjct: 206 -----PLETFYVADALSGQDGVRSAGTFHTEIGLSGVVLSKFDSDSKGGVALGIAHQLQI 260 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE I DL+ F+ + + G D Sbjct: 261 PLRFIGHGEKIPDLDIFMPDRIANRLMGAGD 291 >gi|193216691|ref|YP_001999933.1| signal recognition particle [Mycoplasma arthritidis 158L3-1] gi|193002014|gb|ACF07229.1| signal recognition particle [Mycoplasma arthritidis 158L3-1] Length = 441 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 109/204 (53%), Gaps = 9/204 (4%) Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL--KVMLAAGDTFRSAAIDQ 157 + P P I++VG+ G GKTT KL+ L +L D +R AA +Q Sbjct: 88 TNPIEISLKKIPTTIMMVGLQGSGKTTTAAKLATFFKKKKLCQNPLLVGDDIYRPAAREQ 147 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ A +T DF E +DA +A EA K+A + D++I+DTAGRL + LM + Sbjct: 148 LEQLAKQTQTDFFTKE-KNDAIFIAKEAIKRANDNRNDLVIVDTAGRLAIDENLM---DE 203 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 +I + K + P +L V+DA +GQ+ + ++FH + I+TK+D ARGG + Sbjct: 204 LINIKKAIHPD---YILLVVDAMSGQDVINVAKIFHENLNLSATIITKLDSDARGGAALS 260 Query: 278 IVVTHKIPVYFLGVGEGINDLEPF 301 I ++P+ F+G GE ++ +E F Sbjct: 261 ITHLLEVPIAFIGTGEKLSGIEIF 284 >gi|241206757|ref|YP_002977853.1| signal recognition particle protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860647|gb|ACS58314.1| signal recognition particle protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 525 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 113/206 (54%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT K++ +++ KV++A+ DT R AA +QL+ + + D Sbjct: 100 PVVIMMVGLQGSGKTTTSAKIAHRLTTREKKKVLMASLDTRRPAAQEQLRQLGAQANIDT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ DV+I+DTAGR H + LM +M + KR +PH Sbjct: 160 LPVISGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMV---EMADIKKRSNPH- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +L V D+ TGQ+A+ F G TGL++T+MDG RGG + + P+ + Sbjct: 216 --EILLVADSLTGQDAVNLARSFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE +++LE F + + I G D Sbjct: 274 GVGEKMSELEEFHPRRIADRILGMGD 299 >gi|87199425|ref|YP_496682.1| signal recognition particle subunit FFH/SRP54 (srp54) [Novosphingobium aromaticivorans DSM 12444] gi|87135106|gb|ABD25848.1| signal recognition particle subunit FFH/SRP54 (srp54) [Novosphingobium aromaticivorans DSM 12444] Length = 491 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 80/269 (29%), Positives = 140/269 (52%), Gaps = 13/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + V ++ ++++ + + V SV Q+V+ V++ + ML + + + Sbjct: 38 LLEADVALPVVRRFIDQVSEQAVGQSVLKSVTPGQQVVKIVNDALVDMLGGGTAELDLNA 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P VI++VG+ G GKTT K+ K + + G KV++A+ D R AA +QL + ++ Sbjct: 98 AP-PVVIMMVGLQGSGKTTSTAKIGKLLKEKQGKKVLMASLDVNRPAAQEQLAVLGEQAG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + G +A A A+ + VDVL++DTAGRLH + LM + + V Sbjct: 157 VATLPIVAGQQPVDIATRAVNAAKLQAVDVLLLDTAGRLHVDQALMDEMKAVAAV----- 211 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+D+ TGQ+A+ + F TG+++T+MDG ARGG + + P+ Sbjct: 212 -SVPRETLLVVDSLTGQDAVNVAQSFSGEVDLTGVVLTRMDGDARGGAALSMRAVTGKPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F GE ++ +EPF + + I G D Sbjct: 271 KFAATGEKLDAIEPFHPERVAGRILGMGD 299 >gi|283455254|ref|YP_003359818.1| signal recognition particle, subunit FFH/SRP54 [Bifidobacterium dentium Bd1] gi|283101888|gb|ADB08994.1| ffh Signal recognition particle, subunit FFH/SRP54 [Bifidobacterium dentium Bd1] Length = 541 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 85/298 (28%), Positives = 143/298 (47%), Gaps = 32/298 (10%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKML- 96 DG E+ L+ +D+ + V + + + +VS Q+V+ V+E + +L Sbjct: 24 DGTIREIRRALLDADVALDVVRSFTGRIRERALGTEVSQALNPAQQVVKIVNEELTDVLG 83 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 + +P N+ + P +I++ G+ G GKTT+ GKL + D+G +L A D R A+ Sbjct: 84 AGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGKLGYWLKDSGHTPLLVAADLQRPNAVT 142 Query: 157 QLKIWADRTSADFVCSEIG----------------SDAAALAYEAFKQAQAKKVDVLIID 200 QL++ +R E G D +A ++ A+ K D +IID Sbjct: 143 QLQVVGERAGVPVYAPEKGVQSAGGEAVASPGLTTGDPVKVARDSVAFARQKLYDTVIID 202 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL + LM + R ++ D P+ +L V+DA GQ+A++ + F TG Sbjct: 203 TAGRLGVDEELM----RQARDIR--DAVQPNEILFVIDAMIGQDAVQTAKAFDEGVDFTG 256 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 ++++K+DG ARGG + + P+ F GEG+ D E F ++ I LD G+ Sbjct: 257 VVLSKLDGDARGGAALSVASVTGKPILFASTGEGLKDFEVFHPDRMASRI---LDMGD 311 >gi|182417247|ref|ZP_02948600.1| signal recognition particle protein [Clostridium butyricum 5521] gi|237668219|ref|ZP_04528203.1| signal recognition particle protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378893|gb|EDT76406.1| signal recognition particle protein [Clostridium butyricum 5521] gi|237656567|gb|EEP54123.1| signal recognition particle protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 452 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 79/268 (29%), Positives = 133/268 (49%), Gaps = 12/268 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + V + +K +V Q+V+ V+E + ++ +++ Sbjct: 39 LLEADVNYKVVKTFVSNVSSKCVGSEVLESLTPGQQVIKIVNEELTNLMGGSESKLSYN- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P VI++VG+ G GKTT+ GKL+ + K +L A D +R AAI QL++ + Sbjct: 98 SSGPTVIMLVGLQGAGKTTMCGKLALNLRKDNKKPLLVACDIYRPAAIKQLEVVGKQIEI 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +A A+ +++IIDTAGRLH + LM + + +K Sbjct: 158 PVFSMGDKVSPVDIAKAGIAHARDNGNNIVIIDTAGRLHIDEDLMQELKDIKENVK---- 213 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ TGQ+A+ E F+ +G+I+TK+DG RGG + I P+ Sbjct: 214 --PSEILLVVDSMTGQDAVNVAENFNNDLDLSGVILTKLDGDTRGGAALSIKSIINKPIK 271 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 ++G+GE +ND E F ++ I G D Sbjct: 272 YVGLGEKMNDFEVFHPDRMASRILGMGD 299 >gi|188579898|ref|YP_001923343.1| signal recognition particle protein [Methylobacterium populi BJ001] gi|179343396|gb|ACB78808.1| signal recognition particle protein [Methylobacterium populi BJ001] Length = 520 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P IL+VG+ G GKTT K++++++ +V+LA+ DT R AA++QL + A + + Sbjct: 100 PVAILMVGLQGSGKTTTTAKIARRLNQREKRRVLLASLDTRRPAAMEQLAVLAKQVEVES 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G A +A A + A+ DV+++DTAGR + LMA ++ Sbjct: 160 LPIVAGQSAVQIARRAMEAARLGGFDVVMLDTAGRTTVDEGLMAEAAEVKAATN------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH VL V DA TGQ+A+ F G TG+++T+MDG +RGG + + P+ + Sbjct: 214 PHEVLLVADALTGQDAVNTARAFDQRLGVTGIVLTRMDGDSRGGAALSMRAVTGKPIKLV 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE ++ LE F + + I G D Sbjct: 274 GVGEKVDALEEFHPQRVANRILGMGD 299 >gi|149198633|ref|ZP_01875677.1| signal recognition particle [Lentisphaera araneosa HTCC2155] gi|149138348|gb|EDM26757.1| signal recognition particle [Lentisphaera araneosa HTCC2155] Length = 469 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 127/239 (53%), Gaps = 26/239 (10%) Query: 88 VSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 V +++H+ L L ++ + S P VI++VG++G GKTT KL+ + KV+LA Sbjct: 74 VVKVVHEELTRLMGTEEAEVNTSGNPAVIMMVGLHGAGKTTTCAKLAHFYKNQKKKVLLA 133 Query: 146 AGDTFRSAAIDQLK---------IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196 A D +R AAIDQL+ +++DR++ D V +A A A+++ D+ Sbjct: 134 ACDVYRPAAIDQLEALGKDIQVPVFSDRSTPDVV---------QIAQNAMNTAKSEGHDL 184 Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256 +I+D AGRL + + + ++IRV +R +P +L D+ GQ A+ F Sbjct: 185 VILDMAGRLQIDEDM---VQELIRVKERFNPG---EILLTADSALGQEAVSVATHFDQAL 238 Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G+++TK+DG ARGG + + P+ F+ GE ++DLE F + ++ I G D Sbjct: 239 NISGIVLTKLDGDARGGAALSMRKVTGKPIKFITSGEKVSDLEKFRPEGMASRILGMGD 297 >gi|261880314|ref|ZP_06006741.1| signal recognition particle protein [Prevotella bergensis DSM 17361] gi|270333004|gb|EFA43790.1| signal recognition particle protein [Prevotella bergensis DSM 17361] Length = 451 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 66/196 (33%), Positives = 106/196 (54%), Gaps = 7/196 (3%) Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRT 165 S +P V+L+ G+ G GKTT GKL+ + + G +L A D +R AAI+QLK+ ++ Sbjct: 95 LSGKPAVVLMSGLQGSGKTTFSGKLANLLKNKRGKNPLLVACDVYRPAAIEQLKVVGEQV 154 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 E + +A A ++A+AK DV+I+DTAGRL + +M I + + Sbjct: 155 GVPVYTEEGNKNVNEIALHAIQEAKAKGNDVVIVDTAGRLAVDEDMMNEIASLKEAI--- 211 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 +P L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + I P Sbjct: 212 ---SPDETLFVVDSMTGQDAVNTAKEFNDRIDFDGVVLTKLDGDTRGGAALSIRTVVTKP 268 Query: 286 VYFLGVGEGINDLEPF 301 + F+G GE + L+ F Sbjct: 269 IKFIGTGEKMEALDVF 284 >gi|332360439|gb|EGJ38250.1| signal recognition particle protein [Streptococcus sanguinis SK355] Length = 524 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 109/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + QA+A D ++IDTAGRL + LM + ++ L Sbjct: 159 PVFALGTEVPAVEIVRQGLDQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F++ TG+I+TK+DG RGG + + P+ Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|157803379|ref|YP_001491928.1| coproporphyrinogen III oxidase [Rickettsia canadensis str. McKiel] gi|157784642|gb|ABV73143.1| coproporphyrinogen III oxidase [Rickettsia canadensis str. McKiel] Length = 449 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 150/290 (51%), Gaps = 16/290 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89 I++ ++D +R+ + L+ SD+ + V + + E+ K ++V SV Q ++ + Sbjct: 21 ILTEAQIDATMRD-IRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIH 79 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 E + +L + + +P V L+VG+ G GKTT GKL+ ++ + KV+L + D Sbjct: 80 EEMINLLAASESETKLNLNSKPPVNFLMVGLQGSGKTTASGKLALRLKNHNKKVLLVSLD 139 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 T+R AA +QL I A+ + + G + A +A+ DV+I DTAGR + Sbjct: 140 TYRPAAQEQLAILANLVQINSLPIVQGEKPLDIVKRAIAEAKLSAYDVVIYDTAGRTQID 199 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 +M + ++++ P L V+D+ TGQ+A+ F+ +GLI++++DG Sbjct: 200 KEMMEEALSIKKIVE------PTETLLVIDSMTGQDAVVTASSFNEKLEISGLILSRIDG 253 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 ++GG + + K P+ FL GE + DLE F AK ++ I LD G+ Sbjct: 254 DSKGGAALSVKYITKKPIKFLSNGEKLTDLEEFDAKRLASRI---LDMGD 300 >gi|160901803|ref|YP_001567384.1| signal recognition particle protein [Petrotoga mobilis SJ95] gi|160359447|gb|ABX31061.1| signal recognition particle protein [Petrotoga mobilis SJ95] Length = 439 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 91/310 (29%), Positives = 154/310 (49%), Gaps = 28/310 (9%) Query: 15 RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---- 70 +KLT F + S K K +S + + D VRE ++ L+ +D+ V +++++ + Sbjct: 7 KKLTGVFKNLSGKGK------LSEKNIKDAVRE-VKLSLLEADVHYKVVKELIDRVKEEA 59 Query: 71 ----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 + + D R++ D +LI LM + S P I++ G+ G GKT+ Sbjct: 60 IGSKVLESLTPDQEFIRIVRD--DLIE--LMGGKENNKITISRNPGFIMLTGLQGSGKTS 115 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL-KIWADRTSADFVCSEIGSDAAALAYEA 185 KL+ G +L A DT+R AAIDQL ++ D F + +A + E+ Sbjct: 116 TAAKLANFYKKKGKNPLLVAADTYRPAAIDQLVQLGEDIGIPVFTGDRV--NALKIIEES 173 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 K A+ D++I+DTAGRLH + +M + + +++ P +L V+D+ GQ+A Sbjct: 174 KKYAEKLLHDIVIVDTAGRLHIDEKMMEELENIKKLIN------PDEILMVVDSMVGQDA 227 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + + F+ +G +++K+DG +RGG +I I PV +GVGE I+DLE F Sbjct: 228 VNSAKEFNDKLDLSGFVVSKLDGDSRGGVIISIRYITGKPVKLVGVGEKIDDLEEFYPDR 287 Query: 306 FSAVITGCLD 315 + I G D Sbjct: 288 YVGRILGMGD 297 >gi|13357648|ref|NP_077922.1| signal recognition particle [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762113|ref|YP_001752172.1| signal recognition particle protein [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|183508525|ref|ZP_02958049.1| signal recognition particle protein [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|11275264|pir||C82936 signal recognition particle UU091 [imported] - Ureaplasma urealyticum gi|6899044|gb|AAF30497.1|AE002108_10 signal recognition particle [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827690|gb|ACA32952.1| signal recognition particle protein [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182675962|gb|EDT87867.1| signal recognition particle protein [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 448 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 146/295 (49%), Gaps = 28/295 (9%) Query: 38 SRRLDDG--VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR------------ 83 S++L + V E++++LL S+I +A+ V L+ K++ K++ + Sbjct: 15 SKKLKNATIVEEDIKELL--SEIRIALLDADVNLLVVKKFIKNIKEKTIGLYVEANQKPA 72 Query: 84 --VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GL 140 VL + + + ++L +KP N S I++VG+ G GKTT GKL+ + Sbjct: 73 DLVLKIIKDELVEILGKENKPVNTAKSQLK--IMMVGLQGSGKTTTTGKLANYFKNKYNK 130 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 K +L A D +R AAIDQL+ A + DF E + A +A + +++I+D Sbjct: 131 KPLLVAADIYRPAAIDQLRTLAKQVRVDF-WEEGTQRPDLIVKNALNKADENENNLIIVD 189 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL N LM +++ V K L+P V V+DA GQ+ + F+ TG Sbjct: 190 TAGRLQTNEELMQ---ELVNVKKTLNPD---EVFLVVDAMAGQDIINVATEFNNWLKLTG 243 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+D AR G ++ + IP+ F G GE I ++ F + + I G D Sbjct: 244 IIVTKLDSDARAGAVLSLTSLLNIPIKFTGTGEKIGSIDSFYPERMADRILGLGD 298 >gi|42408582|dbj|BAD09759.1| putative signal recognition particle receptor [Oryza sativa Japonica Group] gi|42409016|dbj|BAD10269.1| putative signal recognition particle receptor [Oryza sativa Japonica Group] Length = 610 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 85/278 (30%), Positives = 137/278 (49%), Gaps = 28/278 (10%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFN--- 104 L+D L+ ++ +A+K+ E + K + S R+ V + + L+ + P Sbjct: 331 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSID 390 Query: 105 -------WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 +P+VI+ VGVNGVGK+T + K++ + L V LAA DTFRS A++Q Sbjct: 391 ILRDVHAAKERGKPYVIVFVGVNGVGKSTNLAKVAYWLLQHNLSVSLAACDTFRSGAVEQ 450 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ A R D A +A EA ++A K DV+++DTAGR+ +N LM + K Sbjct: 451 LRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSK 510 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-------AVAGTT---GLIMTKMD 267 +I + ++P VL V +A G +A+ Q+ F+ AV T G+++TK D Sbjct: 511 LINL------NSPDLVLFVGEALVGNDAVDQLTKFNQKLADLSAVPTTRLIDGILLTKFD 564 Query: 268 G-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 + G + +V PV F+G G+ DL+ K Sbjct: 565 TIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVK 602 >gi|260948082|ref|XP_002618338.1| hypothetical protein CLUG_01797 [Clavispora lusitaniae ATCC 42720] gi|238848210|gb|EEQ37674.1| hypothetical protein CLUG_01797 [Clavispora lusitaniae ATCC 42720] Length = 529 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 85/282 (30%), Positives = 138/282 (48%), Gaps = 31/282 (10%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-LSK 101 D V ++ D LI +I A+ I E++ T+ +K V+V ++E + K+L P +S Sbjct: 241 DEVSKKFNDQLISKNIAPPTAKAITEKIKTRLGSKTVTVNAFKQALTEELTKILTPNVST 300 Query: 102 PFNWDFSH------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 ++ RP+VI VVGVNGVGK+T + KL+ + L V++ A DTFRS A+ Sbjct: 301 DLLYEIKKSSAAKKRPYVISVVGVNGVGKSTNLAKLAYWLLQNNLNVLICACDTFRSGAV 360 Query: 156 DQLKIWAD-----RTSADFVCSEI--------GSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +QLK+ S D C G A A + A + D+++IDTA Sbjct: 361 EQLKVHVKNLKRLNASNDTECKIDLFEKGYGGGDHVVKTAKSAIQHATTEGYDIVLIDTA 420 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG-- 260 GR H+N+ LMA + K D P ++ V +A G +++ Q F+ G Sbjct: 421 GRTHSNAKLMAPLKKF------GDAADPDKIIMVGEALVGTDSVEQAINFNNAFGNKRNL 474 Query: 261 --LIMTKMDGTAR-GGGLIPIVVTHKIPVYFLGVGEGINDLE 299 I++K+D G +I +V+ +P+ F+G G+ D++ Sbjct: 475 DFFIISKVDTVGDLVGAMINMVMATNVPILFVGTGQTYTDIK 516 >gi|57237011|ref|YP_178813.1| signal recognition particle protein [Campylobacter jejuni RM1221] gi|148926674|ref|ZP_01810355.1| signal recognition particle protein [Campylobacter jejuni subsp. jejuni CG8486] gi|57165815|gb|AAW34594.1| signal recognition particle protein [Campylobacter jejuni RM1221] gi|145845193|gb|EDK22288.1| signal recognition particle protein [Campylobacter jejuni subsp. jejuni CG8486] gi|315058172|gb|ADT72501.1| Signal recognition particle, subunit Ffh SRP54 [Campylobacter jejuni subsp. jejuni S3] Length = 445 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/205 (34%), Positives = 108/205 (52%), Gaps = 6/205 (2%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P V+L+ G+ G GKTT KL+ + KV++AA D R AA++QL+ + Sbjct: 92 SKPPTVVLMAGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEI 151 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + E D +A EA K+A++ VDVL++DTAGRL + LM + + VL Sbjct: 152 ELFFIENEKDPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMNELKAVKDVLN---- 207 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V DA +GQ+ ++ F+ +G+I++K D +GG + I IP+ Sbjct: 208 --PDEIFYVADAMSGQDGVKTAASFNEALNISGVILSKFDADTKGGVALGIAKQIGIPLR 265 Query: 288 FLGVGEGINDLEPFVAKDFSAVITG 312 F+GVGE + DLE F+ + I G Sbjct: 266 FIGVGEKVADLEVFIPDRIVSRIMG 290 >gi|28378333|ref|NP_785225.1| signal recognition particle protein Ffh [Lactobacillus plantarum WCFS1] gi|254556541|ref|YP_003062958.1| signal recognition particle protein Ffh [Lactobacillus plantarum JDM1] gi|28271168|emb|CAD64073.1| signal recognition particle protein Ffh [Lactobacillus plantarum WCFS1] gi|254045468|gb|ACT62261.1| signal recognition particle protein Ffh [Lactobacillus plantarum JDM1] Length = 484 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 88/309 (28%), Positives = 150/309 (48%), Gaps = 23/309 (7%) Query: 20 GFASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 F + +L++ +T++ IS L +RE + L+ +D+ V + V+ + + Sbjct: 2 AFEGLTERLQKAMTNLRRKGKISESDLRATMRE-IRLALLEADVNFTVVKDFVKTVRERA 60 Query: 75 YAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V Q+++ V E + K + + P N P VI++ G+ G GKTT +G Sbjct: 61 LGAKVLEGLNPAQQIVKIVDEELTKTMGEKAVPLNKS-PKIPTVIMMAGLQGAGKTTTVG 119 Query: 130 KLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD--AAALAYEAF 186 KL+ K+ ++ + ++ A D +R AAI+QL+ D ++G+D + + Sbjct: 120 KLALKLKNEQDARPLMIAADVYRPAAIEQLQQVG--RQIDVPVFQLGTDVDPVEIVRQGM 177 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 QA+ D + IDTAGRL + LM + + ++ P +L V+DA TGQNA+ Sbjct: 178 AQAKENHNDYVFIDTAGRLQIDEQLMNELANIKDLVH------PDEILLVIDAMTGQNAV 231 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 E F+ TG+++TK+DG RGG + I P+ F+G GE + DL+ F Sbjct: 232 NTAEGFNDKLDVTGVVLTKLDGDTRGGAALSIRAVTGKPIKFVGQGEKMTDLDVFHPDRM 291 Query: 307 SAVITGCLD 315 + I G D Sbjct: 292 ADRILGMGD 300 >gi|313839842|gb|EFS77556.1| signal recognition particle protein [Propionibacterium acnes HL086PA1] Length = 528 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/284 (28%), Positives = 144/284 (50%), Gaps = 18/284 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D ++ L+ +D+ ++V ++ V + + + +++S Q+++ V+E + ++L Sbjct: 28 DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + P ++++ G+ G GKTT+ GKL++ + G +LAA D R A+ Q Sbjct: 88 GQTRTVRFAKTP-PTIVMLAGLQGAGKTTLAGKLARWFKEEGHSPLLAACDLQRPNAVTQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L++ +R E G+ D +A +A +A+ K DV+IIDTAGRL ++ +MA Sbjct: 147 LQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAEAEHKLYDVVIIDTAGRLGVDAEMMAQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + P L V+DA GQ+A+ F G G+++TK+DG ARGG Sbjct: 207 AADIKTATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFDGVVLTKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + I P+ F GEG+ D + F ++ I LD G+ Sbjct: 261 ALSIARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301 >gi|54026131|ref|YP_120373.1| putative signal recognition particle protein [Nocardia farcinica IFM 10152] gi|54017639|dbj|BAD59009.1| putative signal recognition particle protein [Nocardia farcinica IFM 10152] Length = 520 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 91/318 (28%), Positives = 146/318 (45%), Gaps = 30/318 (9%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + D+ RL D E+ L+ +D+ + V + + + + Sbjct: 2 FESLSDRLTGALKDLRGKGRLSPADIDATCREIRLALLEADVALPVVRGFIARIKERAKG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L ++ N + P VI++ G+ G GKTT+ GKL Sbjct: 62 AEVSAALNPAQQVVKIVNEELVGILGGETRRLNLAKTP-PTVIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--------------D 177 +K + G + +L A D R A+ QL++ +R G+ D Sbjct: 121 AKYLKGQGHQPLLVACDLQRPGAVTQLQVVGERAGVPVFAPHPGTSVGGGENPLGITAAD 180 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 +A +A+ K+ D++I+DTAGRL + LM IR D P L VL Sbjct: 181 PVEVARGGVAEARNKQYDIVIVDTAGRLGIDEELMRQAAS-IR-----DAVQPDETLFVL 234 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA GQ+A+ E F G TG+++TK+DG ARGG + + P+ F GE + D Sbjct: 235 DAMIGQDAVTTAEAFRDGVGFTGVVLTKLDGDARGGAALSVRNVTGAPIMFASTGEKLED 294 Query: 298 LEPFVAKDFSAVITGCLD 315 + F ++ I G D Sbjct: 295 FDVFHPDRMASRILGMGD 312 >gi|50842924|ref|YP_056151.1| signal recognition particle protein [Propionibacterium acnes KPA171202] gi|289426463|ref|ZP_06428206.1| signal recognition particle protein [Propionibacterium acnes SK187] gi|295130981|ref|YP_003581644.1| signal recognition particle protein [Propionibacterium acnes SK137] gi|50840526|gb|AAT83193.1| signal recognition particle protein [Propionibacterium acnes KPA171202] gi|289153191|gb|EFD01909.1| signal recognition particle protein [Propionibacterium acnes SK187] gi|291375525|gb|ADD99379.1| signal recognition particle protein [Propionibacterium acnes SK137] gi|313773595|gb|EFS39561.1| signal recognition particle protein [Propionibacterium acnes HL074PA1] gi|313794051|gb|EFS42075.1| signal recognition particle protein [Propionibacterium acnes HL110PA1] gi|313801438|gb|EFS42689.1| signal recognition particle protein [Propionibacterium acnes HL110PA2] gi|313807882|gb|EFS46363.1| signal recognition particle protein [Propionibacterium acnes HL087PA2] gi|313811647|gb|EFS49361.1| signal recognition particle protein [Propionibacterium acnes HL083PA1] gi|313813544|gb|EFS51258.1| signal recognition particle protein [Propionibacterium acnes HL025PA1] gi|313816834|gb|EFS54548.1| signal recognition particle protein [Propionibacterium acnes HL059PA1] gi|313819667|gb|EFS57381.1| signal recognition particle protein [Propionibacterium acnes HL046PA2] gi|313822227|gb|EFS59941.1| signal recognition particle protein [Propionibacterium acnes HL036PA1] gi|313823540|gb|EFS61254.1| signal recognition particle protein [Propionibacterium acnes HL036PA2] gi|313825867|gb|EFS63581.1| signal recognition particle protein [Propionibacterium acnes HL063PA1] gi|313829547|gb|EFS67261.1| signal recognition particle protein [Propionibacterium acnes HL063PA2] gi|313831388|gb|EFS69102.1| signal recognition particle protein [Propionibacterium acnes HL007PA1] gi|313835000|gb|EFS72714.1| signal recognition particle protein [Propionibacterium acnes HL056PA1] gi|314914659|gb|EFS78490.1| signal recognition particle protein [Propionibacterium acnes HL005PA4] gi|314920862|gb|EFS84693.1| signal recognition particle protein [Propionibacterium acnes HL050PA3] gi|314924621|gb|EFS88452.1| signal recognition particle protein [Propionibacterium acnes HL036PA3] gi|314930540|gb|EFS94371.1| signal recognition particle protein [Propionibacterium acnes HL067PA1] gi|314954300|gb|EFS98706.1| signal recognition particle protein [Propionibacterium acnes HL027PA1] gi|314957421|gb|EFT01524.1| signal recognition particle protein [Propionibacterium acnes HL002PA1] gi|314962015|gb|EFT06116.1| signal recognition particle protein [Propionibacterium acnes HL002PA2] gi|314963595|gb|EFT07695.1| signal recognition particle protein [Propionibacterium acnes HL082PA1] gi|314968573|gb|EFT12671.1| signal recognition particle protein [Propionibacterium acnes HL037PA1] gi|314974263|gb|EFT18359.1| signal recognition particle protein [Propionibacterium acnes HL053PA1] gi|314976732|gb|EFT20827.1| signal recognition particle protein [Propionibacterium acnes HL045PA1] gi|314978890|gb|EFT22984.1| signal recognition particle protein [Propionibacterium acnes HL072PA2] gi|314986450|gb|EFT30542.1| signal recognition particle protein [Propionibacterium acnes HL005PA2] gi|314990810|gb|EFT34901.1| signal recognition particle protein [Propionibacterium acnes HL005PA3] gi|315079449|gb|EFT51442.1| signal recognition particle protein [Propionibacterium acnes HL053PA2] gi|315081324|gb|EFT53300.1| signal recognition particle protein [Propionibacterium acnes HL078PA1] gi|315083525|gb|EFT55501.1| signal recognition particle protein [Propionibacterium acnes HL027PA2] gi|315087205|gb|EFT59181.1| signal recognition particle protein [Propionibacterium acnes HL002PA3] gi|315089379|gb|EFT61355.1| signal recognition particle protein [Propionibacterium acnes HL072PA1] gi|315095403|gb|EFT67379.1| signal recognition particle protein [Propionibacterium acnes HL038PA1] gi|315099284|gb|EFT71260.1| signal recognition particle protein [Propionibacterium acnes HL059PA2] gi|315100482|gb|EFT72458.1| signal recognition particle protein [Propionibacterium acnes HL046PA1] gi|315106740|gb|EFT78716.1| signal recognition particle protein [Propionibacterium acnes HL030PA1] gi|315109083|gb|EFT81059.1| signal recognition particle protein [Propionibacterium acnes HL030PA2] gi|327328336|gb|EGE70098.1| signal recognition particle protein [Propionibacterium acnes HL096PA2] gi|327329799|gb|EGE71555.1| signal recognition particle protein [Propionibacterium acnes HL096PA3] gi|327444120|gb|EGE90774.1| signal recognition particle protein [Propionibacterium acnes HL043PA2] gi|327445001|gb|EGE91655.1| signal recognition particle protein [Propionibacterium acnes HL043PA1] gi|327446484|gb|EGE93138.1| signal recognition particle protein [Propionibacterium acnes HL013PA2] gi|327451930|gb|EGE98584.1| signal recognition particle protein [Propionibacterium acnes HL092PA1] gi|327455035|gb|EGF01690.1| signal recognition particle protein [Propionibacterium acnes HL087PA3] gi|327457677|gb|EGF04332.1| signal recognition particle protein [Propionibacterium acnes HL083PA2] gi|328752240|gb|EGF65856.1| signal recognition particle protein [Propionibacterium acnes HL020PA1] gi|328755133|gb|EGF68749.1| signal recognition particle protein [Propionibacterium acnes HL087PA1] gi|328758089|gb|EGF71705.1| signal recognition particle protein [Propionibacterium acnes HL025PA2] gi|328760087|gb|EGF73666.1| signal recognition particle protein [Propionibacterium acnes HL099PA1] gi|332675861|gb|AEE72677.1| signal recognition particle protein [Propionibacterium acnes 266] Length = 528 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/284 (28%), Positives = 144/284 (50%), Gaps = 18/284 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D ++ L+ +D+ ++V ++ V + + + +++S Q+++ V+E + ++L Sbjct: 28 DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + P ++++ G+ G GKTT+ GKL++ + G +LAA D R A+ Q Sbjct: 88 GQTRTVRFAKTP-PTIVMLAGLQGAGKTTLAGKLARWFKEEGHSPLLAACDLQRPNAVTQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L++ +R E G+ D +A +A +A+ K DV+IIDTAGRL ++ +MA Sbjct: 147 LQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAEAEHKLYDVVIIDTAGRLGVDAEMMAQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + P L V+DA GQ+A+ F G G+++TK+DG ARGG Sbjct: 207 AADIKTATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFDGVVLTKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + I P+ F GEG+ D + F ++ I LD G+ Sbjct: 261 ALSIARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301 >gi|78065151|ref|YP_367920.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia sp. 383] gi|77965896|gb|ABB07276.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia sp. 383] Length = 455 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 109/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT GKL+K + + KV+ + D +R AAI QLK +++ ADF Sbjct: 104 PAVILMAGLQGAGKTTTAGKLAKLLREKYKKKVLTVSCDVYRPAAIMQLKTVSEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S +A A A+ DVLI+DTAGRL + ++M I + LK Sbjct: 164 FPSTPDQKPVDIAIAAVDWAKRHYHDVLIVDTAGRLGIDEVMMQEIAALHGTLK------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG +RGG + + P+ F+ Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F + I G D Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303 >gi|22537142|ref|NP_687993.1| signal recognition particle protein Ffh [Streptococcus agalactiae 2603V/R] gi|25011071|ref|NP_735466.1| hypothetical protein gbs1017 [Streptococcus agalactiae NEM316] gi|76787075|ref|YP_329698.1| signal recognition particle protein [Streptococcus agalactiae A909] gi|76797794|ref|ZP_00780060.1| signal recognition particle protein [Streptococcus agalactiae 18RS21] gi|77405715|ref|ZP_00782802.1| signal recognition particle protein [Streptococcus agalactiae H36B] gi|77412008|ref|ZP_00788337.1| signal recognition particle protein [Streptococcus agalactiae CJB111] gi|77413611|ref|ZP_00789797.1| signal recognition particle protein [Streptococcus agalactiae 515] gi|22534004|gb|AAM99865.1|AE014236_19 signal recognition particle protein Ffh [Streptococcus agalactiae 2603V/R] gi|23095470|emb|CAD46676.1| Unknown [Streptococcus agalactiae NEM316] gi|76562132|gb|ABA44716.1| signal recognition particle protein [Streptococcus agalactiae A909] gi|76586870|gb|EAO63362.1| signal recognition particle protein [Streptococcus agalactiae 18RS21] gi|77160320|gb|EAO71445.1| signal recognition particle protein [Streptococcus agalactiae 515] gi|77161964|gb|EAO72946.1| signal recognition particle protein [Streptococcus agalactiae CJB111] gi|77175711|gb|EAO78493.1| signal recognition particle protein [Streptococcus agalactiae H36B] Length = 521 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + M+ A D +R AAIDQLK + + Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLIKEDNARPMMIAADIYRPAAIDQLKTLGSQINVPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 A + + +QA+ + D ++IDTAGRL ++ LM + + + + Sbjct: 161 FDMGTNHSAVEIVTKGLEQARENRNDYVLIDTAGRLQIDATLMQELHDVKAIAQ------ 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P+ +L V+D+ GQ A E F+ +G+++TK+DG RGG + + P+ F Sbjct: 215 PNEILLVVDSMIGQEAANVAEEFNRQLSISGVVLTKIDGDTRGGAALSVREITGKPIKFT 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I D+E F ++ I G D Sbjct: 275 GTGEKITDIETFHPDRMASRILGMGD 300 >gi|291519525|emb|CBK74746.1| signal recognition particle protein [Butyrivibrio fibrisolvens 16/4] Length = 446 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 145/307 (47%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ ++ S RL + V+ L+++ L+ +D+ V ++ + + Sbjct: 3 FDSLSEKLQGVFKNLRSKGRLSEADVKAALKEVKMALLEADVNFKVVKQFTNTVTERAIG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 DV Q V+ V+E + ++ + I++VG+ G GKTT KL Sbjct: 63 SDVMNGLNPGQMVIKIVNEELVNLMGSEVTDITYGTGGAITTIMMVGLQGAGKTTTTAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K+ G K +L A D +R AAI+QL+I + + +A EA A+ Sbjct: 123 AGKVKQRGKKPLLVACDIYRPAAIEQLQINGKKQGVEVFSLGDKEKPVKIAKEAMDYAKK 182 Query: 192 KKVDVLIIDTAGRLHNNSILM---AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 DV+I DTAGRLH + +M A I I +L + + V+DA TGQ+A+ Sbjct: 183 NGFDVVIFDTAGRLHIDEDMMNELASIKSNIDIL---------NTILVVDAMTGQDAVNV 233 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 F G G+I+TK+DG RGG + I P+ + G+GE ++DLE F ++ Sbjct: 234 SSTFDEKIGIDGVIITKLDGDTRGGAALSIKAVTGKPILYAGMGEKLSDLEQFHPDRMAS 293 Query: 309 VITGCLD 315 I G D Sbjct: 294 RILGMGD 300 >gi|326692469|ref|ZP_08229474.1| signal recognition particle protein [Leuconostoc argentinum KCTC 3773] Length = 491 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/271 (29%), Positives = 131/271 (48%), Gaps = 17/271 (6%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ +K V + K D+ Q+V+ V++ + + + P N Sbjct: 39 LLEADVNYDTVKKFVANVREKASGADILEGLNPAQQVVKIVNDELTATMGEEAVPLNKS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P +I++ G+ G GKTT + KL+ K+ ++ + +L A D +R AAIDQL+I Sbjct: 98 QKIPTIIMMAGLQGAGKTTTVAKLAYKLKTEEKARPLLIAADVYRPAAIDQLEILG--RD 155 Query: 167 ADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 D ++G+D + + +A K D + IDTAGRL + +LM + + + + Sbjct: 156 LDIPVFQLGTDVDPREIVRQGLAKAAENKNDYVFIDTAGRLQIDEVLMQELKDVAEIAQ- 214 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P +L +DA TGQNA + F TG+++TK+DG RGG + I Sbjct: 215 -----PDEILLTVDAMTGQNAAETAKGFAEALDLTGVVLTKLDGDTRGGAALSIRDVTGK 269 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE DL+ F ++ I G D Sbjct: 270 PIKFVGQGEKPTDLDVFYPDRMASRILGMGD 300 >gi|319745019|gb|EFV97347.1| signal recognition particle protein [Streptococcus agalactiae ATCC 13813] Length = 521 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + M+ A D +R AAIDQLK + + Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLIKEDNARPMMIAADIYRPAAIDQLKTLGSQINVPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 A + + +QA+ + D ++IDTAGRL ++ LM + + + + Sbjct: 161 FDMGTNHSAVEIVTKGLEQARENRNDYVLIDTAGRLQIDATLMQELHDVKAIAQ------ 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P+ +L V+D+ GQ A E F+ +G+++TK+DG RGG + + P+ F Sbjct: 215 PNEILLVVDSMIGQEAANVAEEFNRQLSISGVVLTKIDGDTRGGAALSVREITGKPIKFT 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I D+E F ++ I G D Sbjct: 275 GTGEKITDIETFHPDRMASRILGMGD 300 >gi|3265154|gb|AAC24713.1| signal recognition particle [Streptomyces lividans] Length = 550 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 85/284 (29%), Positives = 142/284 (50%), Gaps = 18/284 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + ++++ + +VS Q+VL V+E + +L Sbjct: 62 DATAREIRIALLEADVALPVVRAFMKKVKERSLGAEVSKALNPAQQVLKIVNEELVGILG 121 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + P VI++ G+ G GKTT+ GKL + + G +L A D R A++Q Sbjct: 122 GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGHWLKEQGHSPLLVACDLQRPNAVNQ 180 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R E G+ D +A ++ + A+AK D++I+DTAGRL + LM Sbjct: 181 LSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEFAKAKVHDLVIVDTAGRLGIDQELMQQ 240 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P +L V+DA GQ A+ E F G G++++K+DG ARGG Sbjct: 241 AAD-IR-----DAVSPDEILFVVDAMIGQEAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 294 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + I P+ F GE ++D + F ++ I LD G+ Sbjct: 295 ALSIASVTGKPIMFASNGEKLDDFDAFHPDRMASRI---LDMGD 335 >gi|314933415|ref|ZP_07840780.1| signal recognition particle protein [Staphylococcus caprae C87] gi|313653565|gb|EFS17322.1| signal recognition particle protein [Staphylococcus caprae C87] Length = 455 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 108/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT GKL+ M K ML AGD +R AAIDQL+ + Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAGDIYRPAAIDQLQTVGKQIDIPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + A + A+ + +D +IIDTAGRLH + LM + ++ + K Sbjct: 161 YSEGDQVPPQQIVENALQHAKEEHLDFVIIDTAGRLHIDEALMNELQEVKEISK------ 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P ++ V+DA TGQ+A+ + F +G+ +TK+DG RGG + I + P+ F+ Sbjct: 215 PDEIMLVVDAMTGQDAVNVAQSFDDQLDVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFV 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+ E ++ LE F + ++ I G D Sbjct: 275 GMSEKLDGLELFHPERMASRILGMGD 300 >gi|46579253|ref|YP_010061.1| signal recognition particle protein [Desulfovibrio vulgaris str. Hildenborough] gi|46448667|gb|AAS95320.1| signal recognition particle protein [Desulfovibrio vulgaris str. Hildenborough] gi|311233082|gb|ADP85936.1| signal recognition particle protein [Desulfovibrio vulgaris RCH1] Length = 508 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 87/307 (28%), Positives = 147/307 (47%), Gaps = 22/307 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + +LD+ ++E L ++ L+ +D+ V + ++ + + Sbjct: 2 FDSLSDRLTQAFRKFSGQSQLDENNIQEGLREVRLALLEADVNFKVVKDFIDRVKERCLG 61 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVI 128 +DV Q+V+ +++H L+ L + R P VI++VG+ G GKTT Sbjct: 62 QDVLKSLTPAQQVV----KVVHDELVELLGGGTTELDLRGAQPGVIMMVGLQGSGKTTSS 117 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 K++ + ++ L D +R AAIDQL A + + S + A Sbjct: 118 AKIANLLRKRKMRPYLVPVDVYRPAAIDQLVTLARQLDIPYYQSTPDMKPLDIVRAALAD 177 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K+ +++DTAGRLH + LM + + AP +L V DA TGQ+A+ Sbjct: 178 AKEKQCTAVLLDTAGRLHVDEALMDELAALKATF------APQEILFVADAMTGQDAVTV 231 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F+ G TG+++TKMDG ARGG + I V ++G+GE ++D+E F + Sbjct: 232 ADAFNEKLGITGVVLTKMDGDARGGAALSIKSVTGASVKYVGIGEKLSDIEVFHPDRVAG 291 Query: 309 VITGCLD 315 I G D Sbjct: 292 RILGMGD 298 >gi|161525962|ref|YP_001580974.1| signal recognition particle protein [Burkholderia multivorans ATCC 17616] gi|189349319|ref|YP_001944947.1| signal recognition particle subunit SRP54 [Burkholderia multivorans ATCC 17616] gi|221202411|ref|ZP_03575443.1| signal recognition particle protein [Burkholderia multivorans CGD2M] gi|221208129|ref|ZP_03581134.1| signal recognition particle protein [Burkholderia multivorans CGD2] gi|221213245|ref|ZP_03586220.1| signal recognition particle protein [Burkholderia multivorans CGD1] gi|160343391|gb|ABX16477.1| signal recognition particle protein [Burkholderia multivorans ATCC 17616] gi|189333341|dbj|BAG42411.1| signal recognition particle subunit SRP54 [Burkholderia multivorans ATCC 17616] gi|221166697|gb|EED99168.1| signal recognition particle protein [Burkholderia multivorans CGD1] gi|221172032|gb|EEE04474.1| signal recognition particle protein [Burkholderia multivorans CGD2] gi|221177688|gb|EEE10103.1| signal recognition particle protein [Burkholderia multivorans CGD2M] Length = 455 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 109/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT GKL+K + + KV+ + D +R AAI QLK +++ ADF Sbjct: 104 PAVILMAGLQGAGKTTTAGKLAKLLREKYKKKVLTVSCDVYRPAAIMQLKTVSEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S +A A A+ DVLI+DTAGRL + +M I + VLK Sbjct: 164 FPSTPDQKPVDIAVAAVDWAKRHYHDVLIVDTAGRLGIDEAMMQEIAALHGVLK------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG +RGG + + P+ F+ Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F + I G D Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303 >gi|90421127|ref|ZP_01229029.1| signal recognition particle protein [Aurantimonas manganoxydans SI85-9A1] gi|90334619|gb|EAS48399.1| signal recognition particle protein [Aurantimonas manganoxydans SI85-9A1] Length = 517 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT GKL+K++++ K V++A+ DT R AA +QL++ ++T Sbjct: 100 PVVLMMVGLQGSGKTTTTGKLAKRLTERQRKKVLMASLDTRRPAAQEQLRVLGEQTGVAT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ D++I+DTAGR H + LM + + R + Sbjct: 160 LPIIAGQGPVEIAARAKQAAKLGGYDLVILDTAGRTHIDEPLMVEMADIKRTTE------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH +L V D+ TGQ+A+ F G TG+++T++DG RGG + + P+ + Sbjct: 214 PHEILLVADSLTGQDAVNLARSFDERVGITGIVLTRVDGDGRGGAALSMRAVTGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE ++ LE F + I G D Sbjct: 274 GTGEKMDALEDFHPSRIADRILGMGD 299 >gi|300722260|ref|YP_003711544.1| 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA [Xenorhabdus nematophila ATCC 19061] gi|297628761|emb|CBJ89339.1| 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA [Xenorhabdus nematophila ATCC 19061] Length = 453 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 91/305 (29%), Positives = 152/305 (49%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D +++ L ++ L+ +D+ + V + + + Sbjct: 2 FENLTDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFISRVKESAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+ Q + V + K + ++ N + P V+L+ G+ G GKTT + KL Sbjct: 62 HEVNKSLTPGQEFVKIVQNELIKAMGEVNSELNLS-AQPPAVVLMAGLQGAGKTTSVAKL 120 Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 K + + K +L + D +R AAI QL+ ++ DF S+ + +A + A+ Sbjct: 121 GKLLKEKNKKKVLVVSADVYRPAAIKQLETLSETVGIDFFPSDPQEKPIDIVNKAIQHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K DVL+IDTAGRLH + +M I + +K P L V+DA TGQ+A + Sbjct: 181 LKFYDVLLIDTAGRLHVDEAMMDEIKAVHAAVK------PVETLFVVDAMTGQDAANTAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ TG+++TK+DG ARGG + I P+ FLGVGE + LEPF ++ I Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFYPDRIASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|186477391|ref|YP_001858861.1| signal recognition particle protein [Burkholderia phymatum STM815] gi|184193850|gb|ACC71815.1| signal recognition particle protein [Burkholderia phymatum STM815] Length = 455 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 109/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +IL+ G+ G GKTT +GKL+K + + KV+ + D +R AAI QLK ++ ADF Sbjct: 104 PAIILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S+ +A A A+ DVL++DTAGRL + +M I + + L Sbjct: 164 FPSQPDQKPVDIARAAVDWAKRHYHDVLLVDTAGRLGIDEAMMNEIAALHKELN------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG +RGG + + P+ F+ Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F + I G D Sbjct: 278 GVAEKLDGLEIFYPDRMANRILGMGD 303 >gi|77409211|ref|ZP_00785921.1| signal recognition particle protein [Streptococcus agalactiae COH1] gi|77172187|gb|EAO75346.1| signal recognition particle protein [Streptococcus agalactiae COH1] Length = 521 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + M+ A D +R AAIDQLK + + Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLIKEDNARPMMIAADIYRPAAIDQLKTLGSQINVPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 A + + +QA+ + D ++IDTAGRL ++ LM + + + + Sbjct: 161 FDMGTNHSAVEIVTKGLEQARENRNDYVLIDTAGRLQIDATLMQELHDVKAIAQ------ 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P+ +L V+D+ GQ A E F+ +G+++TK+DG RGG + + P+ F Sbjct: 215 PNEILLVVDSMIGQEAANVAEEFNRQLSISGVVLTKIDGDTRGGAALSVREITGKPIKFT 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I D+E F ++ I G D Sbjct: 275 GTGEKITDIETFHPDRMASRILGMGD 300 >gi|327489572|gb|EGF21364.1| signal recognition particle protein [Streptococcus sanguinis SK1058] Length = 524 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEEKARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QA+A D ++IDTAGRL + LM + ++ L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F++ TG+I+TK+DG RGG + + P+ Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|317508405|ref|ZP_07966075.1| signal recognition particle protein [Segniliparus rugosus ATCC BAA-974] gi|316253252|gb|EFV12652.1| signal recognition particle protein [Segniliparus rugosus ATCC BAA-974] Length = 515 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 89/283 (31%), Positives = 141/283 (49%), Gaps = 29/283 (10%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-------QRVLYDVSELIHKMLMPLSKPFNW 105 L+ +D+ + V ++ + + K AK V++ Q+V+ V E + ++L S+ + Sbjct: 38 LLEADVALPVVREFIGRV--KERAKGVALSGALNPAQQVVKIVDEELTEILGGESRRLQF 95 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + P VI++VG+ G GKTT+ GKL+K + G +L A D R A+ QL++ +R Sbjct: 96 AKTP-PTVIMLVGLQGAGKTTLAGKLAKWLKHQGHAPLLVACDLQRPGAVKQLQVVGERA 154 Query: 166 SADFVCSEIGS----------DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 E G+ D A+A + A+ + DV+++DTAGRL + LMA Sbjct: 155 GVGVFAPEPGASLDNDGITVGDPVAVARAGVEFARGQHHDVVVVDTAGRLGVDQELMAQ- 213 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 IR D +P VL +DA GQ+AL F G TG+++TK+DG ARGG Sbjct: 214 AAAIR-----DAVSPDEVLFTVDAMIGQDALHAATAFDQGVGFTGVVLTKLDGDARGGAA 268 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + + P+ F VGE + D + F S+ I LD G+ Sbjct: 269 LSVRQVTGKPILFASVGEKLEDFDVFHPDRMSSRI---LDMGD 308 >gi|20151307|gb|AAM11013.1| AT23778p [Drosophila melanogaster] Length = 569 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 8/226 (3%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 EL+ K++ P KP+ + +V++ VG+ G GKTT KL+ K L DT Sbjct: 82 ELV-KLVDPGVKPYQ-PIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+ A DQ+K A + F S D +A + + + +++I+DT+GR Sbjct: 140 FRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKREGFEMIIVDTSGRHKQEE 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 L +M+ V + +P +++ V+DAT GQ Q + F +I+TK+DG Sbjct: 200 SLFE---EMLAVSNAV---SPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGH 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 A+GGG + V + P+ F+G GE I+DLEPF K F + + G D Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 299 >gi|242277674|ref|YP_002989803.1| signal recognition particle protein [Desulfovibrio salexigens DSM 2638] gi|242120568|gb|ACS78264.1| signal recognition particle protein [Desulfovibrio salexigens DSM 2638] Length = 505 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 92/306 (30%), Positives = 146/306 (47%), Gaps = 20/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRLDD-----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F S S +L E + RLD+ G+RE + L+ +D+ V + VE++ + Sbjct: 2 FDSLSDRLSEAFKNFKGQGRLDEKNIQAGLRE-VRLALLEADVNYKVVKDFVEKVKERAL 60 Query: 76 AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++V Q+V+ V++ + ++L + + I++VG+ G GKTT K Sbjct: 61 GQEVQKSLSPGQQVIKVVNDELTELLGGEQEGLQLT-KGKLSKIMMVGLQGSGKTTSSAK 119 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 ++ + K L D +R AAIDQL + A + S + + +A +A+ Sbjct: 120 IALYLRRKKFKPYLVPADVYRPAAIDQLHVLAKQLDMPAYPSTTEMNPVDICRDAMVKAE 179 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH-APHSVLQVLDATTGQNALRQV 249 DVL+ DTAGRLH + LM L + H +P +L V DA TGQ+A+ Sbjct: 180 EAGCDVLLFDTAGRLHIDEPLM-------EELSSIKEHCSPDEILFVADAMTGQDAVNVA 232 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 F TG+++TKMDG ARGG + I V F+GVGE +++LE F ++ Sbjct: 233 STFDDKLDVTGVVLTKMDGDARGGAALSIKSVTGKSVKFVGVGEKLSELELFYPDRAASR 292 Query: 310 ITGCLD 315 I G D Sbjct: 293 ILGMGD 298 >gi|70726678|ref|YP_253592.1| hypothetical protein SH1677 [Staphylococcus haemolyticus JCSC1435] gi|68447402|dbj|BAE04986.1| ffh [Staphylococcus haemolyticus JCSC1435] Length = 456 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 108/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT GKL+ M K ML A D +R AAI+QL+ + Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQLDVPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + A K A+ + +D +IIDTAGRLH + LM + ++ + K Sbjct: 161 YSEGDQVKPQQIVENALKHAKEEHLDFVIIDTAGRLHIDEALMNELQEVKEISK------ 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P+ ++ V+DA TGQ+A+ + F TG+ +TK+DG RGG + I + P+ F+ Sbjct: 215 PNEIMLVVDAMTGQDAVNVAQSFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFV 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+ E ++ LE F + ++ I G D Sbjct: 275 GMSEKMDGLELFHPERMASRILGMGD 300 >gi|313763657|gb|EFS35021.1| signal recognition particle protein [Propionibacterium acnes HL013PA1] Length = 528 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/284 (28%), Positives = 144/284 (50%), Gaps = 18/284 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D ++ L+ +D+ ++V ++ V + + + +++S Q+++ V+E + ++L Sbjct: 28 DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + P ++++ G+ G GKTT+ GKL++ + G +LAA D R A+ Q Sbjct: 88 GQTRTVRFAKTP-PTIVMLAGLQGAGKTTLAGKLARWFKEEGHSPLLAACDLQRPNAVTQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L++ +R E G+ D +A +A +A+ K DV+IIDTAGRL ++ +MA Sbjct: 147 LQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAEAEHKLYDVVIIDTAGRLGVDAEMMAQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + P L V+DA GQ+A+ F G G+++TK+DG ARGG Sbjct: 207 AADIKTATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFDGVVLTKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + I P+ F GEG+ D + F ++ I LD G+ Sbjct: 261 ALSIARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301 >gi|297566681|ref|YP_003685653.1| signal recognition particle protein [Meiothermus silvanus DSM 9946] gi|296851130|gb|ADH64145.1| signal recognition particle protein [Meiothermus silvanus DSM 9946] Length = 435 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/201 (35%), Positives = 98/201 (48%), Gaps = 6/201 (2%) Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 +VG+ G GKTT GKL+ G + +L A DT R AA +QL+I ++ + Sbjct: 103 FMVGLQGSGKTTTSGKLAAFYKAKGRRPLLVAADTQRPAAREQLRILGEKVGVPVLEVAD 162 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 G A + D++I+DTAGRL + LM + K+ VL+ P Sbjct: 163 GERPEVTARRLREHLTFDYRDLVIVDTAGRLQIDEALMGELAKLKEVLR------PTETF 216 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+DA TGQ AL F G +GLI+TK+DG ARGG + + P+ F GV E Sbjct: 217 LVIDAMTGQEALGVSRTFDERVGISGLILTKLDGDARGGAALSARYVTQKPIVFAGVSEK 276 Query: 295 INDLEPFVAKDFSAVITGCLD 315 I LEPF ++ I G D Sbjct: 277 IEGLEPFYPDRLASRILGMGD 297 >gi|154686014|ref|YP_001421175.1| hypothetical protein RBAM_015810 [Bacillus amyloliquefaciens FZB42] gi|154351865|gb|ABS73944.1| Ffh [Bacillus amyloliquefaciens FZB42] Length = 446 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K +L A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A ++A+ + D +I+DTAGRLH + LM + + V Sbjct: 159 PVFSLGDQVSPVEIARQAIEKAKEEHHDYVILDTAGRLHIDHELMDELSGVKEVAN---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+D+ TGQ+A+ + F+ G TG+I+TK+DG RGG + I + P+ Sbjct: 215 --PEEIFLVVDSMTGQDAVNVAKSFNDQLGLTGVILTKLDGDTRGGAALSIRAVTETPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ LE F + ++ I G D Sbjct: 273 FAGMGEKLDALEAFHPERMASRILGMGD 300 >gi|115497558|ref|NP_001068590.1| signal recognition particle receptor subunit alpha [Bos taurus] gi|122139924|sp|Q3MHE8|SRPR_BOVIN RecName: Full=Signal recognition particle receptor subunit alpha; Short=SR-alpha; AltName: Full=Docking protein alpha; Short=DP-alpha gi|75773717|gb|AAI05265.1| Signal recognition particle receptor (docking protein) [Bos taurus] Length = 639 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 93/323 (28%), Positives = 153/323 (47%), Gaps = 42/323 (13%) Query: 18 TKGFASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 TKG + +G+ S R D + V +++ D LI ++ +A ++ E + K Sbjct: 314 TKGTLGGMFGMLKGLVGSKSLTREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEG 373 Query: 77 KDV-SVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKT 125 K + + V V + + + L+ + +P + RP+V+ GVNGVGK+ Sbjct: 374 KVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKS 433 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-------------DFVCS 172 T + K+S + + G V++AA DTFR+ A++QL+ R SA Sbjct: 434 TNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEK 493 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 G DAA +A EA A+ + DV+++DTAGR+ +N+ LM + K+I V + P Sbjct: 494 GYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDL 547 Query: 233 VLQVLDATTGQNALRQVEMF------HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVT 281 VL V +A G A+ Q+ F H++A T G+++TK D + G I + Sbjct: 548 VLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYI 607 Query: 282 HKIPVYFLGVGEGINDLEPFVAK 304 P+ F+G G+ DL AK Sbjct: 608 TSKPIVFVGTGQTYCDLRSLNAK 630 >gi|94985540|ref|YP_604904.1| signal recognition particle protein [Deinococcus geothermalis DSM 11300] gi|94555821|gb|ABF45735.1| signal recognition particle GTPase [Deinococcus geothermalis DSM 11300] Length = 450 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 86/276 (31%), Positives = 131/276 (47%), Gaps = 19/276 (6%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSELIHKMLMPL 99 E+ L+ +D+ VA+ V ++ K ++V +V ++++D ELI + Sbjct: 33 EIRMALLEADVNFNVAKDFVAKVSEKAVGQEVVGSLTAGQTVVKLVHD--ELIETLGGEA 90 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 +P + +V +VG+ G GKTT GKL+ G +V+L A DT R AA DQL+ Sbjct: 91 RQPT---LKNDGNVWFMVGLQGAGKTTSAGKLAAFYKSKGRRVLLVAADTQRPAARDQLE 147 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 + A + + + G + + D++I+DTAGRL + LM + + Sbjct: 148 VLAKQVGVPVLKVKDGETPQETKRRLDEYLKTDYRDLVIVDTAGRLQIDEALMDQLAALQ 207 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 L+ P L V+DA TGQ AL +F +GLI+TKMDG ARGG + Sbjct: 208 AELQ------PTETLLVVDAMTGQEALNVARVFDERVHLSGLIITKMDGDARGGAALSAR 261 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+YF GV E + LEPF + I G D Sbjct: 262 SVTGKPIYFAGVSEKLTGLEPFYPDRVAGRILGMGD 297 >gi|332208934|ref|XP_003253565.1| PREDICTED: signal recognition particle receptor subunit alpha-like, partial [Nomascus leucogenys] Length = 608 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 145/302 (48%), Gaps = 41/302 (13%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96 SR + V +++ D LI ++ +A ++ E + K K + + V V + + + L Sbjct: 304 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 363 Query: 97 MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + + +P + RP+V+ GVNGVGK+T + K+S + + G V++AA Sbjct: 364 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 423 Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193 DTFR+ A++QL+ R SA G DAA +A EA A+ + Sbjct: 424 CDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 483 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252 DV+++DTAGR+ +N+ LM + K+I V + P VL V +A G A+ Q+ F Sbjct: 484 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 537 Query: 253 -----HAVAGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 H++A T G+++TK D + G I + P+ F+G G+ DL Sbjct: 538 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 597 Query: 303 AK 304 AK Sbjct: 598 AK 599 >gi|238026162|ref|YP_002910393.1| Signal recognition particle protein [Burkholderia glumae BGR1] gi|237875356|gb|ACR27689.1| Signal recognition particle protein [Burkholderia glumae BGR1] Length = 455 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 13/209 (6%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +IL+ G+ G GKTT +GKL+K + + KV+ + D +R AAI QLK +++ ADF Sbjct: 104 PAIILMAGLQGAGKTTTVGKLAKLLREKQKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S +A A A+ DVLI+DTAGRL + +M I ++ HA Sbjct: 164 FPSTPEQKPVEIARAALDWARRHYHDVLIVDTAGRLGIDEAMMKEIAEL---------HA 214 Query: 230 ---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA GQ+A+ + F+ TG+++TK+DG +RGG + + P+ Sbjct: 215 AINPAETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRSITGKPI 274 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+GV E ++ LE F + I G D Sbjct: 275 KFVGVAEKLDGLEVFHPDRMANRILGMGD 303 >gi|332701670|ref|ZP_08421758.1| signal recognition particle protein [Desulfovibrio africanus str. Walvis Bay] gi|332551819|gb|EGJ48863.1| signal recognition particle protein [Desulfovibrio africanus str. Walvis Bay] Length = 508 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/286 (29%), Positives = 146/286 (51%), Gaps = 14/286 (4%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSE 90 ++ + +G+RE + L+ +D+ V ++ V+ + K +DV Q+V+ V + Sbjct: 22 LTEENIQEGLRE-VRLALLEADVNFKVVKQFVDRVREKALGQDVQGSLTPGQQVVKVVHD 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDT 149 + ++L + F+ S +P +++VG+ G GKTT GKL+ + + +K L D Sbjct: 81 ELVELLGGKTSAFDVKGS-KPLTVMMVGLQGSGKTTSAGKLALYLRREHKMKPFLVPADV 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAIDQL + S + + +A + A+ K D+++ DTAGRLH + Sbjct: 140 YRPAAIDQLTKLGAQIDVPVYPSSTDMNPVDICRDALQVAKDKGYDLVLFDTAGRLHIDE 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 LM + + + +P +L V DA TGQ+A+ + F A +G+++TKMDG Sbjct: 200 RLMEELANIKAAV------SPREILFVADAMTGQDAVNVAQSFDAKLEISGVVLTKMDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ARGG + I V F+G+GE ++++E F ++ I G D Sbjct: 254 ARGGAALSIKSVTGKSVKFVGMGEKLSEMEVFHPDRIASRILGMGD 299 >gi|256820615|ref|YP_003141894.1| signal recognition particle protein [Capnocytophaga ochracea DSM 7271] gi|315223725|ref|ZP_07865575.1| signal recognition particle protein [Capnocytophaga ochracea F0287] gi|256582198|gb|ACU93333.1| signal recognition particle protein [Capnocytophaga ochracea DSM 7271] gi|314946300|gb|EFS98299.1| signal recognition particle protein [Capnocytophaga ochracea F0287] Length = 442 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 110/211 (52%), Gaps = 7/211 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADR 164 + S P VIL+ G+ G GKTT GKL+ + + K +L A D +R AAIDQL I ++ Sbjct: 94 NLSGNPTVILMSGLQGSGKTTFSGKLANYLKNKRNKKPLLVACDVYRPAAIDQLHIVGEQ 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + ++ +A + + A+ ++V+I+DTAGRL + +M I + + L Sbjct: 154 VGVPVFSDKGNNNPVDIAKKGVQYAKENHLNVVIVDTAGRLAVDEQMMTEISNIHKALN- 212 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P L V+DA TGQ+A+ + F+ V G+I+TK+DG RGG I I Sbjct: 213 -----PQETLFVVDAMTGQDAVNTAKAFNDVLNFDGVILTKLDGDTRGGAAITIKSVVNK 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE ++ ++ F + I G D Sbjct: 268 PIKFVGTGEKMDAIDVFYPDRMADRILGMGD 298 >gi|254253308|ref|ZP_04946626.1| Signal recognition particle protein [Burkholderia dolosa AUO158] gi|124895917|gb|EAY69797.1| Signal recognition particle protein [Burkholderia dolosa AUO158] Length = 455 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 109/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT +GKL+K + + KV+ + D +R AAI QLK +++ ADF Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIMQLKTVSEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S +A A A+ DVLI+DTAGRL + +M I + LK Sbjct: 164 FPSTPDQKPVDIAVAAVDWAKRHYHDVLIVDTAGRLGIDEAMMQEIAALHGTLK------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG +RGG + + P+ F+ Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F + I G D Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303 >gi|302767828|ref|XP_002967334.1| hypothetical protein SELMODRAFT_439853 [Selaginella moellendorffii] gi|300165325|gb|EFJ31933.1| hypothetical protein SELMODRAFT_439853 [Selaginella moellendorffii] Length = 609 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/272 (30%), Positives = 130/272 (47%), Gaps = 28/272 (10%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPF---- 103 L+D L+ ++ +A+KI E + K + + RV V E + L+ + P Sbjct: 330 LKDRLMTKNVAEEIAEKICESVAASLLGKKLGTFTRVSSAVKEAMGDALLRILTPKRSID 389 Query: 104 ------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 + RP+VI+ VGVNGVGK+T + K++ + L V++AA DTFRS A++Q Sbjct: 390 ILRDVKSAKDEGRPYVIVFVGVNGVGKSTSLAKVAYWLKSHELSVLIAACDTFRSGAVEQ 449 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ A R D A +A EA A K DV+++DTAGR+ +N LM + Sbjct: 450 LRTHAKRLQTTLYEKGYEKDPANVAREAIATAAKTKHDVVLVDTAGRMQDNEPLMRALAN 509 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----------TGLIMTKMD 267 +I V K P VL V +A G A+ Q+ F+ G+++TK D Sbjct: 510 LINVNK------PDLVLFVGEALVGNEAVDQLSKFNQTLADLSATAKRKPIDGILLTKFD 563 Query: 268 G-TARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 + G + +V P+ FLG G+ +DL Sbjct: 564 TIDDKVGAALSMVYVSGAPIMFLGCGQSYHDL 595 >gi|296394376|ref|YP_003659260.1| signal recognition particle protein [Segniliparus rotundus DSM 44985] gi|296181523|gb|ADG98429.1| signal recognition particle protein [Segniliparus rotundus DSM 44985] Length = 516 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 90/283 (31%), Positives = 140/283 (49%), Gaps = 29/283 (10%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-------QRVLYDVSELIHKMLMPLSKPFNW 105 L+ +D+ + V ++ V + K AK V++ Q+V+ V E + ++L S+ W Sbjct: 38 LLEADVALPVVREFVARV--KERAKGVALSGALNPAQQVVKIVDEELTEILGGESRRL-W 94 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 P VI++VG+ G GKTT+ GKL+K + G +L A D R A+ QL++ A+R Sbjct: 95 LAKTPPTVIMLVGLQGAGKTTLAGKLAKWLKSQGHAPLLVACDLQRPGAVKQLQVVAERA 154 Query: 166 SADFVCSEIGS----------DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 + G+ D A+A + A+ + DV+++DTAGRL + LMA Sbjct: 155 GVAVHAPQPGASLEHDGVTAGDPVAVARSGVQLAREQHHDVVVVDTAGRLGVDQELMAQA 214 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 IR D +P VL +DA GQ+AL F G TG+++TK+DG ARGG Sbjct: 215 AA-IR-----DAVSPDEVLFTVDAMIGQDALHAATAFDQGVGFTGVVLTKLDGDARGGAA 268 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + + P+ F GE + D + F S+ I LD G+ Sbjct: 269 LSVRQVTGKPILFASSGEKLEDFDVFHPDRMSSRI---LDMGD 308 >gi|91205962|ref|YP_538317.1| Signal recognition particle protein [Rickettsia bellii RML369-C] gi|122990889|sp|Q1RHD6|SRP54_RICBR RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog gi|91069506|gb|ABE05228.1| Signal recognition particle protein [Rickettsia bellii RML369-C] Length = 449 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 152/290 (52%), Gaps = 16/290 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89 +++ ++D +R+ + L+ SD+ + V + V E+ K ++V SV Q ++ + Sbjct: 21 LLTEEQIDAALRD-IRVALLESDVALPVIKNFVAEVKQKALGQEVIKSVSPGQMIIKIIH 79 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 E + +L + + +P V +L+VG+ G GKTT GKL+ + + KV+L + D Sbjct: 80 EEMINILSSSEDEIKLNLNAKPPVNLLMVGLQGSGKTTASGKLALCLKNQNKKVLLVSLD 139 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 T+R AA +QL+I A+ + + G + A +A+ D++I DTAGR + Sbjct: 140 TYRPAAQEQLEILANSVKINSLPIVKGEKPLDIVKRAMAEAKLSAYDIVIYDTAGRTQID 199 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 +M + I + K ++ P L V+D+ TGQ+A+ F+ +GLI++++DG Sbjct: 200 QEMM---NEAIAIKKIVE---PTETLLVIDSMTGQDAVVTASSFNEQLEISGLILSRIDG 253 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 ++GG + + + P+ FL GE + DLE F AK ++ I LD G+ Sbjct: 254 DSKGGAALSVKYITQRPIKFLSSGEKLTDLEEFDAKRIASRI---LDMGD 300 >gi|329936725|ref|ZP_08286432.1| signal recognition particle protein [Streptomyces griseoaurantiacus M045] gi|329303955|gb|EGG47838.1| signal recognition particle protein [Streptomyces griseoaurantiacus M045] Length = 521 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/267 (29%), Positives = 135/267 (50%), Gaps = 15/267 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + ++ + + +VS Q+VL V+E + +L Sbjct: 28 DATAREIRIALLEADVALPVVRTFIKNVKERALGSEVSRALNPAQQVLKIVNEELVTILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + P VI++ G+ G GKTT+ GKL + + + G +L A D R A++Q Sbjct: 88 GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGRWLKEQGHSPLLVACDLQRPNAVNQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R E G+ D +A ++ + A+ K D++I+DTAGRL + LM Sbjct: 147 LSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEFAKTKVHDIVIVDTAGRLGIDQELMRQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P +L V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301 + I P+ F GE +++ + F Sbjct: 261 ALSIASVTGKPIMFASNGEKLDEFDAF 287 >gi|195337623|ref|XP_002035428.1| GM14699 [Drosophila sechellia] gi|194128521|gb|EDW50564.1| GM14699 [Drosophila sechellia] Length = 508 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 8/226 (3%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 EL+ K++ P KP+ + +V++ VG+ G GKTT KL+ K L DT Sbjct: 82 ELV-KLVDPGVKPYQ-PIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+ A DQ+K A + F S D +A + + + +++I+DT+GR Sbjct: 140 FRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKREGFEMIIVDTSGRHKQEE 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 L +M+ V + +P +++ V+DAT GQ Q + F +I+TK+DG Sbjct: 200 SLFE---EMLAVSNAV---SPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGH 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 A+GGG + V + P+ F+G GE I+DLEPF K F + + G D Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 299 >gi|299116639|emb|CBN76263.1| PFfh, plastid Ffh subunit of the signal recognition particle [Ectocarpus siliculosus] Length = 557 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 87/284 (30%), Positives = 140/284 (49%), Gaps = 17/284 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYDV--SELIHKML 96 +G E++ L+ +D+ + V +V+ + +K + V+ ++ +V EL+ M Sbjct: 122 EGALNEVKRALLDADLNLMVTNTLVDAVKSKAVGMKLVDGVTAKQQFVNVMNDELVEIMG 181 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRSAA 154 + P +P VIL+ G+ G GKTT KL+K + + KV+L AGD +R AA Sbjct: 182 AEQA-PLARRTDGKPTVILLAGLQGTGKTTAAAKLAKYLQQEEEPKKVLLVAGDVYRPAA 240 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 IDQL R + G D + ++A + D +I+DTAGR + LM Sbjct: 241 IDQLISLGKRIDVEVFSMGQGVDPVEITKAGLERAVEGEFDTVIVDTAGRQVVDDTLMTE 300 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + K I+V D VL V+DA TGQ A +F+ G TG ++TKMDG RGG Sbjct: 301 L-KDIQVASEAD-----EVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGA 354 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + + + P+ F+G+GE +++ E AK +I D+ + Sbjct: 355 ALSVQGVSQKPIKFVGIGEKMSEEE--AAKLAKKMINAEFDFND 396 >gi|73954897|ref|XP_546411.2| PREDICTED: similar to Signal recognition particle receptor alpha subunit (SR-alpha) (Docking protein alpha) (DP-alpha) [Canis familiaris] Length = 612 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 145/302 (48%), Gaps = 41/302 (13%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96 SR + V +++ D LI ++ +A ++ E + K K + + V V + + + L Sbjct: 308 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 367 Query: 97 MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + + +P + RP+V+ GVNGVGK+T + K+S + + G V++AA Sbjct: 368 VQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 427 Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193 DTFR+ A++QL+ R SA G DAA +A EA A+ + Sbjct: 428 CDTFRAGAVEQLRTHTRRLSALHPPEKHAGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 487 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252 DV+++DTAGR+ +N+ LM + K+I V + P VL V +A G A+ Q+ F Sbjct: 488 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 541 Query: 253 -----HAVAGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 H++A T G+++TK D + G I + P+ F+G G+ DL Sbjct: 542 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 601 Query: 303 AK 304 AK Sbjct: 602 AK 603 >gi|289427776|ref|ZP_06429487.1| signal recognition particle protein [Propionibacterium acnes J165] gi|289159040|gb|EFD07233.1| signal recognition particle protein [Propionibacterium acnes J165] Length = 528 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/284 (28%), Positives = 144/284 (50%), Gaps = 18/284 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D ++ L+ +D+ ++V ++ V + + + +++S Q+++ V+E + ++L Sbjct: 28 DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + P ++++ G+ G GKTT+ GKL++ + G +LAA D R A+ Q Sbjct: 88 GQTRTVRFAKTP-PTIVMLAGLQGAGKTTLAGKLARWFKEEGHSPLLAACDLQRPNAVTQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L++ +R E G+ D +A +A +A+ K DV+IIDTAGRL ++ +MA Sbjct: 147 LQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAEAEHKLYDVVIIDTAGRLGVDAGMMAQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + P L V+DA GQ+A+ F G G+++TK+DG ARGG Sbjct: 207 AADIKTATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFDGVVLTKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + I P+ F GEG+ D + F ++ I LD G+ Sbjct: 261 ALSIARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301 >gi|239982565|ref|ZP_04705089.1| signal recognition particle protein [Streptomyces albus J1074] Length = 516 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/267 (29%), Positives = 133/267 (49%), Gaps = 15/267 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + ++++ + ++VS Q+++ V+E + +L Sbjct: 28 DATAREIRIALLEADVALPVVRAFIKQVKERALGEEVSKALNPAQQIIKIVNEELVGILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + P VI++ G+ G GKTT+ GKL K + G +L A D R A++Q Sbjct: 88 GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGKWLQGQGHTPLLVAADLQRPNAVNQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R E G+ D +A ++ A+ K+ DV+++DTAGRL + LM Sbjct: 147 LSVVAERAGVGIFAPEPGNGVGDPVQVAKDSIAHARTKQYDVVVVDTAGRLGIDQELMQQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D P VL V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 207 AAD-IR-----DAVQPDEVLFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301 + I + F GE + D + F Sbjct: 261 ALSIAHVTGKQIMFASNGEKLEDFDAF 287 >gi|21282849|ref|NP_645937.1| hypothetical protein MW1120 [Staphylococcus aureus subsp. aureus MW2] gi|49486076|ref|YP_043297.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57651806|ref|YP_186112.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus COL] gi|87161356|ref|YP_493827.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194944|ref|YP_499744.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221359|ref|YP_001332181.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus str. Newman] gi|221142027|ref|ZP_03566520.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253733525|ref|ZP_04867690.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus TCH130] gi|258452535|ref|ZP_05700541.1| signal recognition particle protein [Staphylococcus aureus A5948] gi|262048135|ref|ZP_06021022.1| hypothetical protein SAD30_1911 [Staphylococcus aureus D30] gi|262051866|ref|ZP_06024082.1| hypothetical protein SA930_1416 [Staphylococcus aureus 930918-3] gi|284024161|ref|ZP_06378559.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus 132] gi|294848231|ref|ZP_06788978.1| signal recognition particle protein [Staphylococcus aureus A9754] gi|297208119|ref|ZP_06924550.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912199|ref|ZP_07129642.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus TCH70] gi|304381199|ref|ZP_07363852.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|21204288|dbj|BAB94985.1| ffh [Staphylococcus aureus subsp. aureus MW2] gi|49244519|emb|CAG42948.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57285992|gb|AAW38086.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus COL] gi|87127330|gb|ABD21844.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202502|gb|ABD30312.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374159|dbj|BAF67419.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus str. Newman] gi|253728579|gb|EES97308.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus TCH130] gi|257859753|gb|EEV82595.1| signal recognition particle protein [Staphylococcus aureus A5948] gi|259160267|gb|EEW45295.1| hypothetical protein SA930_1416 [Staphylococcus aureus 930918-3] gi|259163701|gb|EEW48256.1| hypothetical protein SAD30_1911 [Staphylococcus aureus D30] gi|269940729|emb|CBI49110.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus TW20] gi|294825031|gb|EFG41453.1| signal recognition particle protein [Staphylococcus aureus A9754] gi|296887362|gb|EFH26264.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886445|gb|EFK81647.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus TCH70] gi|302751060|gb|ADL65237.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340182|gb|EFM06123.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198476|gb|EFU28805.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus CGS01] gi|320140947|gb|EFW32794.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320144338|gb|EFW36104.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329313906|gb|AEB88319.1| Signal recognition particle protein [Staphylococcus aureus subsp. aureus T0131] gi|329724762|gb|EGG61267.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus 21189] gi|329733573|gb|EGG69901.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus 21193] Length = 455 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/269 (28%), Positives = 135/269 (50%), Gaps = 13/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V ++ ++ + + DV Q+V+ V + + +++ + N Sbjct: 39 LLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTQLMGGENTSINMS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+++VG+ G GKTT GKL+ M K ML A D +R AAI+QL+ + Sbjct: 98 NKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQID 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + A K A+ + +D +IIDTAGRLH + LM + ++ + K Sbjct: 158 IPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAK--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P+ ++ V+D+ TGQ+A+ E F TG+ +TK+DG RGG + I + P+ Sbjct: 215 ---PNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+ E ++ LE F + ++ I G D Sbjct: 272 KFVGMSEKLDGLELFHPERMASRILGMGD 300 >gi|296160511|ref|ZP_06843327.1| signal recognition particle protein [Burkholderia sp. Ch1-1] gi|295889260|gb|EFG69062.1| signal recognition particle protein [Burkholderia sp. Ch1-1] Length = 455 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 108/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT +GKL+K + + KV+ + D +R AAI QLK ++ ADF Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 SE +A A A+ DVL++DTAGRL + +M I + LK Sbjct: 164 FPSEPDQKPVDIARAAVDWAKRHYHDVLLVDTAGRLGIDEAMMKEITALHTELK------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F TG+++TK+DG +RGG + + P+ F+ Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F + I G D Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303 >gi|17647949|ref|NP_523931.1| signal recognition particle protein 54k [Drosophila melanogaster] gi|5679038|gb|AAD46831.1|AF160891_1 BcDNA.GM09489 [Drosophila melanogaster] gi|7295492|gb|AAF50806.1| signal recognition particle protein 54k [Drosophila melanogaster] gi|220952956|gb|ACL89021.1| Srp54k-PA [synthetic construct] Length = 508 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 8/226 (3%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 EL+ K++ P KP+ + +V++ VG+ G GKTT KL+ K L DT Sbjct: 82 ELV-KLVDPGVKPYQ-PIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+ A DQ+K A + F S D +A + + + +++I+DT+GR Sbjct: 140 FRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKREGFEMIIVDTSGRHKQEE 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 L +M+ V + +P +++ V+DAT GQ Q + F +I+TK+DG Sbjct: 200 SLFE---EMLAVSNAV---SPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGH 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 A+GGG + V + P+ F+G GE I+DLEPF K F + + G D Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 299 >gi|157826674|ref|YP_001495738.1| Signal recognition particle protein [Rickettsia bellii OSU 85-389] gi|157801978|gb|ABV78701.1| Signal recognition particle protein [Rickettsia bellii OSU 85-389] Length = 449 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 152/290 (52%), Gaps = 16/290 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89 +++ ++D +R+ + L+ SD+ + V + V E+ K ++V SV Q ++ + Sbjct: 21 LLTEEQIDAALRD-IRVALLESDVALPVIKNFVAEVKQKALGQEVIKSVSPGQMIIKIIH 79 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 E + +L + + +P V +L+VG+ G GKTT GKL+ + + KV+L + D Sbjct: 80 EEMINILSSSEDEIKLNLNAKPPVNLLMVGLQGSGKTTASGKLALCLKNQNKKVLLVSLD 139 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 T+R AA +QL+I A+ + + G + A +A+ D++I DTAGR + Sbjct: 140 TYRPAAQEQLEILANSVKINSLPIVKGDKPLDIVKRAMAEAKLSAYDIVIYDTAGRTQID 199 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 +M + I + K ++ P L V+D+ TGQ+A+ F+ +GLI++++DG Sbjct: 200 QEMM---NEAIAIKKIVE---PTETLLVIDSMTGQDAVVTASSFNEQLEISGLILSRIDG 253 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 ++GG + + + P+ FL GE + DLE F AK ++ I LD G+ Sbjct: 254 DSKGGAALSVKYITQRPIKFLSSGEKLTDLEEFDAKRIASRI---LDMGD 300 >gi|115350547|ref|YP_772386.1| signal recognition particle protein [Burkholderia ambifaria AMMD] gi|170699971|ref|ZP_02890998.1| signal recognition particle protein [Burkholderia ambifaria IOP40-10] gi|172059579|ref|YP_001807231.1| signal recognition particle protein [Burkholderia ambifaria MC40-6] gi|115280535|gb|ABI86052.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia ambifaria AMMD] gi|170135119|gb|EDT03420.1| signal recognition particle protein [Burkholderia ambifaria IOP40-10] gi|171992096|gb|ACB63015.1| signal recognition particle protein [Burkholderia ambifaria MC40-6] Length = 455 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 109/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT +GKL+K + + KV+ + D +R AAI QLK +++ ADF Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKHKKKVLTVSCDVYRPAAIMQLKTVSEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S +A A A+ DVLI+DTAGRL + +M I + LK Sbjct: 164 FPSTPDQKPVDIAVAAVDWAKRHYHDVLIVDTAGRLGIDEAMMQEIAALHGTLK------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG +RGG + + P+ F+ Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F + I G D Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303 >gi|326315620|ref|YP_004233292.1| signal recognition particle protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372456|gb|ADX44725.1| signal recognition particle protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 459 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 108/209 (51%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P VIL+ G+ G GKTT KL+K + + KV+ +GD +R AAI+QLK + Sbjct: 97 AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTKQAG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 A++ S +A A A+ DVL++DTAGRL + LM I ++ L Sbjct: 157 AEWFPSTPDQKPLDIARAAIDHARRHYFDVLLVDTAGRLAIDEALMNEIKELHAALN--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA GQ+A+ + F TG+++TK+DG +RGG + + P+ Sbjct: 214 ---PVETLFVVDAMQGQDAVNTAKAFKEALPLTGIVLTKLDGDSRGGAALSVRQVTGAPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F GV E I+ LE F A+ + + G D Sbjct: 271 KFAGVSEKIDGLEVFDAERHAGRVLGMGD 299 >gi|111225152|ref|YP_715946.1| Signal recognition particle GTPase [Frankia alni ACN14a] gi|111152684|emb|CAJ64425.1| Signal recognition particle GTPase [Frankia alni ACN14a] Length = 517 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 88/307 (28%), Positives = 148/307 (48%), Gaps = 19/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + T + RL D E+ L+ +D+ + V + V + ++ Sbjct: 2 FDTLSSRLDKVFTSLRGRGRLTDADIDATAREIRVALLEADVALPVVRSFVAAIKSRARG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V Q+V+ V+E + +L + + + P VIL+ G+ G GKTT+ GKL Sbjct: 62 AEVGASLNPAQQVIKIVNEELVAILGGGTTTLRFAKTP-PTVILLAGLQGTGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188 + + G +L A D R A++QL++ R + E G+ D +A +A Sbjct: 121 GRWLKAQGHTPLLVAADLQRPNAVNQLQVVGARAGVEVFAPEPGNGVGDPVRVARDALAH 180 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ + DV+++DTAGRL + LM IR D +P +L VLDA GQ+A+ Sbjct: 181 ARRQVFDVVVVDTAGRLGVDEELMRQAAD-IR-----DAVSPDEILFVLDAMIGQDAVAT 234 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 F G +G+++TK+DG ARGG + + P+ F GE ++D + F + ++ Sbjct: 235 ANAFADGVGFSGVVLTKLDGDARGGAALSVAQVTGRPIMFASTGEALDDFDVFHPERMAS 294 Query: 309 VITGCLD 315 I G D Sbjct: 295 RILGMGD 301 >gi|282920020|ref|ZP_06327749.1| signal recognition particle protein [Staphylococcus aureus A9765] gi|282594736|gb|EFB99720.1| signal recognition particle protein [Staphylococcus aureus A9765] Length = 455 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/269 (28%), Positives = 135/269 (50%), Gaps = 13/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V ++ ++ + + DV Q+V+ V + + +++ + N Sbjct: 39 LLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTQLMGGENTSINMS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+++VG+ G GKTT GKL+ M K ML A D +R AAI+QL+ + Sbjct: 98 NKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQID 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + A K A+ + +D +IIDTAGRLH + LM + ++ + K Sbjct: 158 IPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAK--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P+ ++ V+D+ TGQ+A+ E F TG+ +TK+DG RGG + I + P+ Sbjct: 215 ---PNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+ E ++ LE F + ++ I G D Sbjct: 272 KFVGMSEKLDGLELFHPERMASRILGMGD 300 >gi|295666878|ref|XP_002793989.1| signal recognition particle 54 kDa protein [Paracoccidioides brasiliensis Pb01] gi|226277642|gb|EEH33208.1| signal recognition particle 54 kDa protein [Paracoccidioides brasiliensis Pb01] Length = 530 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 90/301 (29%), Positives = 145/301 (48%), Gaps = 22/301 (7%) Query: 27 KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74 ++ + D+ S +D D + +E+ L+ +D+ V + Q + + + L Sbjct: 9 RINAAVNDLTRSSNIDEQAFDAMIKEICAALLSADVNVRLVQSLRKSIKSSVQFSSLPPA 68 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 K +Q+ ++D +L+ ++ P +PF R +V++ VG+ G GKTT KL++ Sbjct: 69 VNKKRLIQKTVFD--QLV-ALVDPHCEPFKPK-KGRSNVVMFVGLQGAGKTTTCTKLARH 124 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 G + L DTFR+ A DQLK A + + S +D +A E + + ++ Sbjct: 125 YQTRGFRAALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPVVVAAEGVAKFKKERF 184 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D++I+DT+GR + L A + ++ +K P + VLD T GQ A Q F A Sbjct: 185 DIIIVDTSGRHKQEADLFAEMTQIQTAIK------PDQTILVLDGTIGQAAEIQSSAFKA 238 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 A +I+TK DG A GGG I V P+ FLG GE + DLE F K F + G Sbjct: 239 TADFGAIIITKTDGAAAGGGAISAVAATHTPIIFLGTGEHMLDLERFAPKPFIQKLLGMG 298 Query: 315 D 315 D Sbjct: 299 D 299 >gi|312879511|ref|ZP_07739311.1| signal recognition particle subunit FFH/SRP54 (srp54) [Aminomonas paucivorans DSM 12260] gi|310782802|gb|EFQ23200.1| signal recognition particle subunit FFH/SRP54 (srp54) [Aminomonas paucivorans DSM 12260] Length = 448 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 88/274 (32%), Positives = 142/274 (51%), Gaps = 14/274 (5%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ V + + + + + +DV Q+VL V E + ++ KP Sbjct: 33 EVRRALLEADVHYKVVKDLTDRIRERATGQDVLASITPAQQVLTIVFEELVAVMGSEPKP 92 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 P V L+ G+ G GKTT K++ ++ + K ++ A D R AA++QL++ A Sbjct: 93 LTIS-PKPPTVYLMAGLQGSGKTTSTVKIASRLKGSH-KPLVVACDLQRPAAVEQLRVLA 150 Query: 163 DRTSADFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 ++ F + G +D +A + K A+ D++++DTAGRL + LM +++R+ Sbjct: 151 EKAGVAFYGPQAGQTDPVQVARGSLKYAEDHLADLILLDTAGRLQIDEALME---ELVRI 207 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 + + P VL V+DA TGQ A+ E FHA G TG+++TK+DG ARGG + I Sbjct: 208 KEAV---PPQEVLLVVDAMTGQEAVTVAESFHAKLGLTGVVLTKLDGDARGGAALAIGAA 264 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 PV G+GE I DLE F A+ I G D Sbjct: 265 TGAPVKLAGMGEKIEDLEVFDARRMGQRILGMGD 298 >gi|217979109|ref|YP_002363256.1| signal recognition particle protein [Methylocella silvestris BL2] gi|217504485|gb|ACK51894.1| signal recognition particle protein [Methylocella silvestris BL2] Length = 540 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/274 (29%), Positives = 142/274 (51%), Gaps = 13/274 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ + V + V+++ + +V SV Q V+ V++++ + L + P Sbjct: 33 EVRRALLEADVALDVVRSFVDKVRARAIGANVVKSVTPGQMVVKIVNDVLIETLGSDADP 92 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIW 161 N D + P I++VG+ G GKTT K++K++ + G KV++A+ D R AA +QL + Sbjct: 93 INLDAAA-PVAIMMVGLQGAGKTTTAAKIAKRLKEQMGRKVLMASLDVKRPAAQEQLAVL 151 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 + D + G +A A + + + DV++ DTAGR H + LM + + I+ Sbjct: 152 GRQVGVDTLPIVAGQTPVQIAVRAEQAGRLQGYDVVLFDTAGRTHIDEALMQEMVE-IKA 210 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 R PH +L V D+ TGQ+A+ + F G TG+++T++DG RGG + + Sbjct: 211 ASR-----PHEILLVADSLTGQDAVHLAKNFDDRVGITGIVLTRVDGDGRGGAALSMRAV 265 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ LG GE ++ LE F + I G D Sbjct: 266 TGKPIKLLGSGEKMDALEDFHPSRIANRILGMGD 299 >gi|156541190|ref|XP_001599499.1| PREDICTED: similar to signal recognition particle receptor alpha subunit [Nasonia vitripennis] Length = 617 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 86/295 (29%), Positives = 143/295 (48%), Gaps = 41/295 (13%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP- 98 V E+L+D LI ++ +AQK+ + + K K D V +++ + ++L P Sbjct: 321 VLEKLKDHLISKNVAAEIAQKLCDSICVKLEGKVLGTFDSVANTVKASLTDALVQILSPK 380 Query: 99 -----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 L F + RP+V+ GVNGVGK+T + K+ + + +V++AA DTFR+ Sbjct: 381 RRVDILRDAFEAKKNGRPYVMAFCGVNGVGKSTNLAKICFWLIENNFRVLIAACDTFRAG 440 Query: 154 AIDQLKI-------------WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 A++QL+ + T G DAA +A EA + A + DV+++D Sbjct: 441 AVEQLRTHMKHLNALHPPEKHGNMTMVQLYEKGYGKDAAGIAMEAIRFATDSRFDVVLVD 500 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT 259 TAGR+ +N LM + K+I+V + P VL V +A G A+ Q+ F+ A+A + Sbjct: 501 TAGRMQDNEPLMRALAKLIKV------NEPDLVLFVGEALVGNEAVDQLVKFNQALADYS 554 Query: 260 ---------GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 G+++TK D + G I + P+ F+G G+ DL+ AK Sbjct: 555 NSTNPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAK 609 >gi|89902111|ref|YP_524582.1| signal recognition particle protein [Rhodoferax ferrireducens T118] gi|89346848|gb|ABD71051.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rhodoferax ferrireducens T118] Length = 454 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 108/209 (51%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P VIL+ G+ G GKTT KL+K + + KV+ +GD +R AAI+QLK+ + Sbjct: 97 AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKMVTAQAG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 A++ S A+A A A+ DVL++DTAGRL + LM I + L Sbjct: 157 AEWFPSSPDQKPVAIALAALDYARKHFFDVLLVDTAGRLAIDEALMQEIKALHAALN--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA GQ+A+ + F TG+I+TK+DG +RGG + + P+ Sbjct: 214 ---PVETLFVVDAMQGQDAVNTAKAFKDALPLTGIILTKLDGDSRGGAALSVRQVTGAPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G E ++ LE F A+ + I G D Sbjct: 271 KFAGTSEKLDGLEVFDAERHAGRILGMGD 299 >gi|195587932|ref|XP_002083715.1| GD13881 [Drosophila simulans] gi|194195724|gb|EDX09300.1| GD13881 [Drosophila simulans] Length = 508 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 8/226 (3%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 EL+ K++ P KP+ + +V++ VG+ G GKTT KL+ K L DT Sbjct: 82 ELV-KLVDPGVKPYQ-PIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+ A DQ+K A + F S D +A + + + +++I+DT+GR Sbjct: 140 FRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKREGFEMIIVDTSGRHKQEE 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 L +M+ V + +P +++ V+DAT GQ Q + F +I+TK+DG Sbjct: 200 SLFE---EMLAVSNAV---SPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGH 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 A+GGG + V + P+ F+G GE I+DLEPF K F + + G D Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 299 >gi|328947325|ref|YP_004364662.1| signal recognition particle protein [Treponema succinifaciens DSM 2489] gi|328447649|gb|AEB13365.1| signal recognition particle protein [Treponema succinifaciens DSM 2489] Length = 464 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 86/287 (29%), Positives = 148/287 (51%), Gaps = 17/287 (5%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL---YDVSELI 92 I+ + +++ V E+++ L+ +D+ + V ++ V T AK V R + ++I Sbjct: 22 ITEKNIEETV-EQIKMALLEADVNLRVVRRFVNS--TIEEAKGEKVLRAVDPGQQFVKII 78 Query: 93 HKMLMPLSKPFNWDFSHR----PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 + L+ + D + + VIL++G+ G GKTT KL+ ++ G + +L A D Sbjct: 79 YDKLVAMLGDKKTDLALKGPDTQSVILLLGLQGAGKTTAAHKLAARLKKDGRRPLLVACD 138 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 R AA++QL + ++ V E DA +A + A+ +D +I+DTAGRL + Sbjct: 139 LIRPAAVEQLCVLGEKIGVP-VYKEDSKDAVKVAEHSVDFAKKNGLDTIIVDTAGRLQID 197 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 +MA +++ + K+L+P +VL V D+ TGQNA+ + F G TG+I+TK D Sbjct: 198 EEMMA---ELVSIKKKLNP--VETVL-VADSMTGQNAVDIAKSFDEQLGLTGVILTKFDS 251 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ARGG + + + P+ F+G GE D E F ++ I G D Sbjct: 252 DARGGAALSLKSITQKPILFIGTGEKTEDFESFHPDRIASRILGMGD 298 >gi|171316239|ref|ZP_02905462.1| signal recognition particle protein [Burkholderia ambifaria MEX-5] gi|171098653|gb|EDT43450.1| signal recognition particle protein [Burkholderia ambifaria MEX-5] Length = 455 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 109/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT +GKL+K + + KV+ + D +R AAI QLK +++ ADF Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKHKKKVLTVSCDVYRPAAIMQLKTVSEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S +A A A+ DVLI+DTAGRL + +M I + LK Sbjct: 164 FPSTPDQKPVDIAVAAVDWAKRHYHDVLIVDTAGRLGIDEAMMQEIAALHGTLK------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG +RGG + + P+ F+ Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F + I G D Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303 >gi|148693439|gb|EDL25386.1| mCG7475 [Mus musculus] Length = 624 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 87/302 (28%), Positives = 145/302 (48%), Gaps = 41/302 (13%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96 SR + V +++ D LI ++ +A ++ E + K K + + V V + + + L Sbjct: 320 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 379 Query: 97 MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + + +P + RP+V+ GVNGVGK+T + K+S + + G V++AA Sbjct: 380 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 439 Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193 DTFR+ A++QL+ R +A G DAA +A EA A+ + Sbjct: 440 CDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 499 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252 DV+++DTAGR+ +N+ LM + K+I V + P VL V +A G A+ Q+ F Sbjct: 500 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 553 Query: 253 -----HAVAGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 H++A T G+++TK D + G I + P+ F+G G+ DL Sbjct: 554 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 613 Query: 303 AK 304 AK Sbjct: 614 AK 615 >gi|77627979|ref|NP_001029322.1| signal recognition particle receptor subunit alpha [Rattus norvegicus] gi|76779803|gb|AAI05783.1| Signal recognition particle receptor ('docking protein') [Rattus norvegicus] Length = 636 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 87/302 (28%), Positives = 145/302 (48%), Gaps = 41/302 (13%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96 SR + V +++ D LI ++ +A ++ E + K K + + V V + + + L Sbjct: 332 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 391 Query: 97 MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + + +P + RP+V+ GVNGVGK+T + K+S + + G V++AA Sbjct: 392 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 451 Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193 DTFR+ A++QL+ R +A G DAA +A EA A+ + Sbjct: 452 CDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 511 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252 DV+++DTAGR+ +N+ LM + K+I V + P VL V +A G A+ Q+ F Sbjct: 512 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 565 Query: 253 -----HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 H++A T G+++TK D + G I + P+ F+G G+ DL Sbjct: 566 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 625 Query: 303 AK 304 AK Sbjct: 626 AK 627 >gi|162456823|ref|YP_001619190.1| signal recognition particle protein [Sorangium cellulosum 'So ce 56'] gi|161167405|emb|CAN98710.1| signal recognition particle protein [Sorangium cellulosum 'So ce 56'] Length = 546 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/205 (35%), Positives = 106/205 (51%), Gaps = 7/205 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P I++VG+ G GKTT KLS+ + G K +L A D R AA++QLK+ + V Sbjct: 109 PTGIMMVGLQGSGKTTSCAKLSRYLEKQGKKPLLVAADMQRPAAVEQLKVLGESLKIP-V 167 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + G A+ A +A+ DV+I DTAGRL + LM + ++ D P Sbjct: 168 FNIPGESPVAICAAARGEAKRLGRDVIIYDTAGRLAIDEPLMQELAQI------KDATKP 221 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 +V V+DA GQ+A++ F+ G+++TK+DG ARGG + I PV F G Sbjct: 222 ENVFLVVDAMIGQDAVKTARGFNERLSIGGVVLTKLDGDARGGAALSIKEVTGAPVLFTG 281 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 +GE + EPF A ++ I G D Sbjct: 282 IGETTDKFEPFRADGMASRILGMGD 306 >gi|91785263|ref|YP_560469.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia xenovorans LB400] gi|91689217|gb|ABE32417.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia xenovorans LB400] Length = 455 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 108/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT +GKL+K + + KV+ + D +R AAI QLK ++ ADF Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 SE +A A A+ DVL++DTAGRL + +M I + LK Sbjct: 164 FPSEPDQKPVDIARAAVDWARRHYHDVLLVDTAGRLGIDEAMMKEITALHAELK------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F TG+++TK+DG +RGG + + P+ F+ Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F + I G D Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303 >gi|148298873|ref|NP_001091776.1| putative signal recognition particle 54 kDa protein [Bombyx mori] gi|111608119|gb|ABH10803.1| putative signal recognition particle 54 kDa protein [Bombyx mori] Length = 501 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 111/226 (49%), Gaps = 8/226 (3%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 EL+ K++ P KP+ +P+VI+ VG+ G GKTT KL+ K L DT Sbjct: 82 ELV-KLVDPGVKPYQ-PVKGKPNVIMYVGLQGSGKTTTCTKLAYHYLRKNWKSCLVCADT 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+ A DQ+K + F S D +A + + ++++I+DT+GR Sbjct: 140 FRAGAYDQVKQNCTKARIPFYGSYTEVDPVVIATTGVDMFKKQGLEMIIVDTSGRHKQEE 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 L + + +K P +++ V+DAT GQ Q F +I+TK+DG Sbjct: 200 SLFEEMLAVATAIK------PDNIIFVMDATIGQACEAQARAFKDKVDIGSVIITKLDGH 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 A+GGG + V + P+ F+G GE I+DLEPF K F + G D Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFIKKLLGMGD 299 >gi|15214760|gb|AAH12512.1| Srpr protein [Mus musculus] Length = 359 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 92/323 (28%), Positives = 153/323 (47%), Gaps = 42/323 (13%) Query: 18 TKGFASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 TKG + +G+ S R D + V +++ D LI ++ +A ++ E + K Sbjct: 34 TKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEG 93 Query: 77 KDV-SVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKT 125 K + + V V + + + L+ + +P + RP+V+ GVNGVGK+ Sbjct: 94 KVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKS 153 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-------------DFVCS 172 T + K+S + + G V++AA DTFR+ A++QL+ R +A Sbjct: 154 TNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEK 213 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 G DAA +A EA A+ + DV+++DTAGR+ +N+ LM + K+I V + P Sbjct: 214 GYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDL 267 Query: 233 VLQVLDATTGQNALRQVEMF------HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVT 281 VL V +A G A+ Q+ F H++A T G+++TK D + G I + Sbjct: 268 VLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYI 327 Query: 282 HKIPVYFLGVGEGINDLEPFVAK 304 P+ F+G G+ DL AK Sbjct: 328 TSKPIVFVGTGQTYCDLRSLNAK 350 >gi|257425291|ref|ZP_05601716.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257430584|ref|ZP_05606966.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433345|ref|ZP_05609703.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus E1410] gi|257436187|ref|ZP_05612234.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus M876] gi|282914013|ref|ZP_06321800.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus M899] gi|282924058|ref|ZP_06331734.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus C101] gi|293510006|ref|ZP_06668714.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus M809] gi|293526593|ref|ZP_06671278.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus M1015] gi|257271748|gb|EEV03886.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257278712|gb|EEV09331.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281438|gb|EEV11575.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus E1410] gi|257284469|gb|EEV14589.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus M876] gi|282314030|gb|EFB44422.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus C101] gi|282322081|gb|EFB52405.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus M899] gi|290920665|gb|EFD97728.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus M1015] gi|291466950|gb|EFF09468.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus M809] Length = 455 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/269 (29%), Positives = 135/269 (50%), Gaps = 13/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V ++ ++ + + DV Q+V+ V + + K++ + N Sbjct: 39 LLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+++VG+ G GKTT GKL+ M K ML A D +R AAI+QL+ + Sbjct: 98 NKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQID 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + A K A+ + +D +IIDTAGRLH + LM + ++ + K Sbjct: 158 IPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAK--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P+ ++ V+D+ TGQ+A+ E F TG+ +TK+DG RGG + I + P+ Sbjct: 215 ---PNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGVALSIRSVTQKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+ E ++ LE F + ++ I G D Sbjct: 272 KFVGMSEKLDGLELFHPERMASRILGMGD 300 >gi|120609564|ref|YP_969242.1| signal recognition particle subunit FFH/SRP54 (srp54) [Acidovorax citrulli AAC00-1] gi|120588028|gb|ABM31468.1| signal recognition particle subunit FFH/SRP54 (srp54) [Acidovorax citrulli AAC00-1] Length = 459 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 108/209 (51%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P VIL+ G+ G GKTT KL+K + + KV+ +GD +R AAI+QLK + Sbjct: 97 AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTKQAG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 A++ S +A A A+ DVL++DTAGRL + LM I ++ L Sbjct: 157 AEWFPSTPEQKPLDIARAAIDHARRHYFDVLLVDTAGRLAIDEALMNEIKELHAALN--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA GQ+A+ + F TG+++TK+DG +RGG + + P+ Sbjct: 214 ---PVETLFVVDAMQGQDAVNTAKAFKEALPLTGIVLTKLDGDSRGGAALSVRQVTGAPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F GV E I+ LE F A+ + + G D Sbjct: 271 KFAGVSEKIDGLEVFDAERHAGRVLGMGD 299 >gi|228474956|ref|ZP_04059684.1| signal recognition particle protein [Staphylococcus hominis SK119] gi|314936601|ref|ZP_07843948.1| signal recognition particle protein [Staphylococcus hominis subsp. hominis C80] gi|228270941|gb|EEK12329.1| signal recognition particle protein [Staphylococcus hominis SK119] gi|313655220|gb|EFS18965.1| signal recognition particle protein [Staphylococcus hominis subsp. hominis C80] Length = 456 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 109/207 (52%), Gaps = 9/207 (4%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT GKL+ M K ML A D +R AAI+QL+ + Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQLDVPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + A + A+ + +D +IIDTAGRLH + LM + + + K Sbjct: 161 YSEGDQVKPQQIVDNALRYAKEEHLDFVIIDTAGRLHIDETLMNELADVKEISK------ 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI-VVTHKIPVYF 288 P ++ V+DA TGQ+A+ + F TG+ +TK+DG RGG + I VTHK P+ F Sbjct: 215 PDEIMLVVDAMTGQDAVNVAQSFDEQLDVTGVTLTKLDGDTRGGAALSIRAVTHK-PIKF 273 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +G+ E ++ LE F + ++ I G D Sbjct: 274 VGMSEKMDGLELFHPERMASRILGMGD 300 >gi|257791128|ref|YP_003181734.1| signal recognition particle protein [Eggerthella lenta DSM 2243] gi|317488142|ref|ZP_07946717.1| signal recognition particle protein [Eggerthella sp. 1_3_56FAA] gi|325832949|ref|ZP_08165622.1| signal recognition particle protein [Eggerthella sp. HGA1] gi|257475025|gb|ACV55345.1| signal recognition particle protein [Eggerthella lenta DSM 2243] gi|316912770|gb|EFV34304.1| signal recognition particle protein [Eggerthella sp. 1_3_56FAA] gi|325485814|gb|EGC88278.1| signal recognition particle protein [Eggerthella sp. HGA1] Length = 472 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 88/281 (31%), Positives = 130/281 (46%), Gaps = 16/281 (5%) Query: 41 LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100 ++D +RE + L+ +D+ V + V TK D V L +I +L L+ Sbjct: 27 INDAMRE-IRMALLEADVNFKVVKSFVAR--TKERCLDAEVLDSLTPAQNVIKIVLDELT 83 Query: 101 KPFNWD-----FSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 + S R P+VI++VG+ G GKTT KL+ ++ +L A D +R AA Sbjct: 84 ELLGRTDSKLVLSSRIPNVIMLVGLQGSGKTTAAAKLAYRLKQENHSPLLVACDVYRPAA 143 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 DQL+ + G D +A E + A DV+I+DTAGRLH + +M Sbjct: 144 ADQLETLGGEIGVRVYRGD-GQDPVKIAQEGIQDAIDNLRDVVIVDTAGRLHVDDEMMDE 202 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + R +K P +L V+DA TGQ+ + F G+IM+KMDG ARGGG Sbjct: 203 AENIKRAVK------PDQILMVVDAMTGQDVVNVASAFSQRVDFDGVIMSKMDGDARGGG 256 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+ GE + LE F + I G D Sbjct: 257 ALSIKQVTGKPIKFISSGEKPDSLEEFHPDRMAKRILGMGD 297 >gi|116671035|ref|YP_831968.1| signal recognition particle subunit FFH/SRP54 (srp54) [Arthrobacter sp. FB24] gi|116611144|gb|ABK03868.1| signal recognition particle subunit FFH/SRP54 (srp54) [Arthrobacter sp. FB24] Length = 529 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 89/317 (28%), Positives = 151/317 (47%), Gaps = 29/317 (9%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L ++ RL D E+ L+ +D+ V V ++ + + Sbjct: 2 FNSLSDRLTATFKNLRGKGRLTEADVDATVREIRRALLDADVAVPVVREFTGRVRERALG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+++ V+E + ++L ++ + P +I++ G+ G GKTT+ GKL Sbjct: 62 AEVSGALNPSQQIVKIVNEELVEILGGETRRIRLAKTG-PTIIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS----------DAAAL 181 SK + G ML A D R A++QL++ R G+ D A+ Sbjct: 121 SKWLKSQGHSPMLVACDLQRPNAVNQLQVVGQRAGVPVFAPHPGATSMELDHPAGDPVAV 180 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 A ++A+ K DV+I+DTAGRL ++ +M ++ R + P+ VL V+D+ Sbjct: 181 ARAGVEEARQKLHDVVIVDTAGRLGVDAEMMEQARQIRRAI------VPNEVLFVIDSMI 234 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQ+A+ F TG++++K+DG ARGG + + PV F GEG++D E F Sbjct: 235 GQDAVNTALAFDEGVNFTGIVLSKLDGDARGGAALSVASVTGKPVMFASTGEGVDDFELF 294 Query: 302 VAKDFSAVITGCLDYGE 318 ++ I LD G+ Sbjct: 295 HPDRMASRI---LDMGD 308 >gi|78046894|ref|YP_363069.1| Signal recognition particle protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325924833|ref|ZP_08186268.1| Signal recognition particle protein [Xanthomonas perforans 91-118] gi|78035324|emb|CAJ22969.1| Signal recognition particle protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325544763|gb|EGD16111.1| Signal recognition particle protein [Xanthomonas perforans 91-118] Length = 458 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/275 (29%), Positives = 138/275 (50%), Gaps = 22/275 (8%) Query: 39 RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 R ++ +RE E+ L+ +D+ + V Q ++E + + ++V Q ++ V + Sbjct: 21 RLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKVVRD 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149 + ++ + N + P ++L+ G+ G GKTT +GKL+K + + K VM+ + D Sbjct: 81 ELTAVMGAAATDLNLNVPA-PAIVLMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADV 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI+QLK A++ F S+ + A A+ VDVL++DTAGRL + Sbjct: 140 YRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDAKKSFVDVLLVDTAGRLAIDQ 199 Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 +M I + HA P L V+DA TGQ+A + F TG+++TK Sbjct: 200 AMMDEIKAL---------HAAVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKT 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 DG ARGG + + P+ F+G GE + L+ F Sbjct: 251 DGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVF 285 >gi|225155878|ref|ZP_03724364.1| signal recognition particle protein [Opitutaceae bacterium TAV2] gi|224803428|gb|EEG21665.1| signal recognition particle protein [Opitutaceae bacterium TAV2] Length = 452 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 112/230 (48%), Gaps = 8/230 (3%) Query: 88 VSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGL-KVMLA 145 + ++IH L+ L + S RP IL+VG++G GKTT KL K + G K + Sbjct: 74 IVKIIHDELVRLLGEGTTELSAARPLKILMVGLHGSGKTTSTAKLGKLLKKRGYNKPFVV 133 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 D +R AAIDQL+I A + F + D A+ + A+A D + DTAGRL Sbjct: 134 GCDIYRPAAIDQLEILAKQEDLGFYSDRVSKDVPAIGAAGLEAARAAGADAIFFDTAGRL 193 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 + L+ + K+ ++ P V V D GQ A+ + FH TGLI+TK Sbjct: 194 QIDQDLIEEVKKLRARIQ------PDEVFLVADGALGQEAVNVAKAFHEAVQLTGLILTK 247 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +DG ARGG + I +P+ F+G GE D E F ++ I G D Sbjct: 248 LDGDARGGAALSIKSITGVPIKFVGTGEKTADFESFYPDRLASRILGMGD 297 >gi|19746132|ref|NP_607268.1| signal recognition particle -inhibited division protein [Streptococcus pyogenes MGAS8232] gi|19748308|gb|AAL97767.1| putative signal recognition particle -inhibited division protein [Streptococcus pyogenes MGAS8232] Length = 520 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 88/308 (28%), Positives = 157/308 (50%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L++ I ++L + V +E+ L+ +D+ + V + ++ + + Sbjct: 3 FESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130 ++ +++L V+E + +L S+ D S + P +I++VG+ G GKTT GK Sbjct: 63 HEIIDTLDPTKQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTTFAGK 120 Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187 L+ K+ + + ++ A D +R AAIDQLK + + ++G+D +A + + + Sbjct: 121 LANKLIKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVRKGLE 178 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 QA+ D ++IDTAGRL + LM + +R +K L P+ +L V+D+ GQ A Sbjct: 179 QARENHNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQEAAN 232 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 F+ TG+++TK+DG RGG + + P+ F G GE I D+E F S Sbjct: 233 VAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGERITDIETFHPDRMS 292 Query: 308 AVITGCLD 315 + I G D Sbjct: 293 SRILGMGD 300 >gi|303237098|ref|ZP_07323668.1| signal recognition particle protein [Prevotella disiens FB035-09AN] gi|302482485|gb|EFL45510.1| signal recognition particle protein [Prevotella disiens FB035-09AN] Length = 447 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 111/211 (52%), Gaps = 9/211 (4%) Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 ++P +IL+ G+ G GKTT GKL+ + + K +L A D +R AAI+QLK+ + Sbjct: 95 LENKPAIILMSGLQGSGKTTFTGKLANLLKTKEHKKPLLVACDVYRPAAIEQLKVVGESV 154 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 D A+A A ++A+A DV+IIDTAGRL ++ +M+ ++ L Sbjct: 155 GVPVYSEPESKDVNAIAEHAIREAKANGNDVVIIDTAGRLAVDT-------EMMNEIESL 207 Query: 226 DPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 H P VL V+D+ TGQ+A+ + F+ G+++TK+DG RGG + I Sbjct: 208 KNHVNPDEVLFVVDSMTGQDAVNTAKEFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVTK 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + L+ F + I G D Sbjct: 268 PIKFIGTGEKMEALDVFHPNRMADRILGMGD 298 >gi|315104272|gb|EFT76248.1| signal recognition particle protein [Propionibacterium acnes HL050PA2] Length = 528 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/284 (28%), Positives = 144/284 (50%), Gaps = 18/284 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D ++ L+ +D+ ++V ++ V + + + +++S Q+++ V+E + ++L Sbjct: 28 DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + P ++++ G+ G GKTT+ GKL++ + G +LAA D R A+ Q Sbjct: 88 GQTRTVRFAKTP-PTIVMLAGLQGAGKTTLAGKLARWFKEEGHSPLLAACDLQRPNAVTQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L++ +R E G+ D +A +A +A+ K DV+IIDTAGRL ++ +MA Sbjct: 147 LQVVGERAGVHVFAPEPGNGVGDPIQVARDAVAEAEHKLYDVVIIDTAGRLGVDAEMMAQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + P L V+DA GQ+A+ F G G+++TK+DG ARGG Sbjct: 207 AADIKAATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFDGVVLTKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + I P+ F GEG+ D + F ++ I LD G+ Sbjct: 261 ALSIARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301 >gi|302761692|ref|XP_002964268.1| hypothetical protein SELMODRAFT_82182 [Selaginella moellendorffii] gi|300167997|gb|EFJ34601.1| hypothetical protein SELMODRAFT_82182 [Selaginella moellendorffii] Length = 467 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/276 (28%), Positives = 129/276 (46%), Gaps = 18/276 (6%) Query: 47 EELEDLLIRSDIGVAVAQ-------KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99 E+ L+++D+ + Q K VE+L + + + V +++ + ++ Sbjct: 33 NEITHALLQADVQFKLVQALSSNVRKSVEKLAAGHDKRHIIQKAVFHEL-----RAMLDA 87 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 KP R +V+++VG+ G GKTT K + G L DTFR+ A DQLK Sbjct: 88 GKPSFTPTKGRTNVVMLVGLQGCGKTTTCTKYALHYRKKGFNPALVCADTFRAGAFDQLK 147 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 A + F S +D +A E ++ K D++I+DT+GR + L + ++ Sbjct: 148 QNATKVKIPFYGSYTETDPVVIAQEGVRKFADAKHDLIILDTSGRHKQENALFEEMRQLA 207 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 P ++ V+D++ GQ A Q F A +I+TK+DG A+GGG + V Sbjct: 208 AATN------PDLIIFVMDSSIGQAANDQALAFRESAKVGAVIITKIDGHAKGGGALSAV 261 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 K P+ FLG GE + E F +K F + + G D Sbjct: 262 AATKSPIIFLGTGEKADAFETFESKAFVSRLLGMGD 297 >gi|269860268|ref|XP_002649856.1| signal recognition particle subunit FFH/SRP54 [Enterocytozoon bieneusi H348] gi|220066696|gb|EED44169.1| signal recognition particle subunit FFH/SRP54 [Enterocytozoon bieneusi H348] Length = 475 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/263 (28%), Positives = 134/263 (50%), Gaps = 21/263 (7%) Query: 62 VAQKIVEELLTKRYAKDVSV-QRVLYD-VSELIHKMLMP--LSKPFNWDFSHRPHVILVV 117 + QKI ++ + + + Q+ ++D +SELI + P +SK HVI+ V Sbjct: 61 LNQKINNQISNQTNKNKIKIIQQTVFDCLSELIDPQVSPYKISK-------GEQHVIVFV 113 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE---- 173 G+ G GKTT I K ++ G KV + DTFR+ A DQ+K A++ + + ++ Sbjct: 114 GLQGSGKTTSICKYARFYRSKGFKVGIVCADTFRAGAYDQIKQNANKINVAYWGNQDEDN 173 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 D ++A + + +++++DT+GR + L I ++ + P+++ Sbjct: 174 TEVDPVSIARKGVSHFKRHDYELILVDTSGRHVQSEDLFLEIQNLVTSIN------PNNI 227 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 + V+DA GQ+A QV+ F G+I+TK+DG + GG + + K PV F+G GE Sbjct: 228 IFVIDAGIGQSAEDQVQGFKKAINIGGIILTKIDGAEKAGGALSSIAVTKCPVEFIGTGE 287 Query: 294 GINDLEPFVAKDFSAVITGCLDY 316 + D E F +K F + + G ++ Sbjct: 288 KMEDFERFNSKIFISKLLGIPNF 310 >gi|169624365|ref|XP_001805588.1| hypothetical protein SNOG_15441 [Phaeosphaeria nodorum SN15] gi|160705155|gb|EAT77106.2| hypothetical protein SNOG_15441 [Phaeosphaeria nodorum SN15] Length = 533 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 91/299 (30%), Positives = 148/299 (49%), Gaps = 18/299 (6%) Query: 27 KLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVA----QKIVEELLTKRYAKD 78 ++ + D+ S LD+ E E+ + L+ +D+ V + Q I + K A + Sbjct: 9 RINAAVNDLTRSPNLDEKAFEAMVKEISNALVEADVNVKLVMNLRQSIKRSVDFKHLAPN 68 Query: 79 VSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136 V+ +RV+ EL+ K++ P ++PF + +VI+ VG+ G GKTT KL++ Sbjct: 69 VNKKRVIQKAVFDELV-KLVDPHAEPFKPK-KGKSNVIMFVGLQGSGKTTTCTKLARWYQ 126 Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196 G K L DTFR+ A DQLK A + + S +D +A E ++ + ++ ++ Sbjct: 127 ARGFKACLVCADTFRAGAFDQLKQNATKAKIPYFGSHTQTDPVIVAAEGVEKFKKERFEI 186 Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256 +I+DT+GR L +M+++ + P + VLDAT GQ A Q F A Sbjct: 187 IIVDTSGRHRQEKDL---FDEMVQIQNAVQ---PDQTIMVLDATIGQAAEGQARAFKDAA 240 Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +++TK DG A GGG I V P+ F+G GE + DLE F + F + + G D Sbjct: 241 DFGAIVITKTDGAAAGGGAISAVAATHTPIVFIGNGEHMLDLERFSPEPFVSKLLGMGD 299 >gi|152980389|ref|YP_001354675.1| signal recognition particle, subunit SRP54 [Janthinobacterium sp. Marseille] gi|151280466|gb|ABR88876.1| signal recognition particle, subunit SRP54 [Janthinobacterium sp. Marseille] Length = 455 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/259 (30%), Positives = 129/259 (49%), Gaps = 17/259 (6%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS---------VQRVLYDVSELIHKMLMPLSKPF 103 L+ +D+ + ++ + + K +DV V V +++ ++ L P + Sbjct: 38 LLEADVALPAVREFISRVKEKAMGEDVVGSLTPGQALVGVVQRELAAIMGADLGPEASQL 97 Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWA 162 N+ + P +IL+ G+ G GKTT +GKL+K + + K V+ + D +R AAI QL+ Sbjct: 98 NF-ATQPPAIILMAGLQGAGKTTTVGKLAKYLREQKKKKVLTVSADVYRPAAIGQLETVT 156 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 + ADF S+ +A A A+ DVLIIDTAGRL + +M I + + Sbjct: 157 AQVGADFFPSQATDKPVDIALAALDYAKRHYHDVLIIDTAGRLGIDEAMMHEIKALHAAV 216 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 K P L V+DA GQ+A+ + F TG+++TK+DG +RGG + + Sbjct: 217 K------PIETLFVVDAMLGQDAINTAKAFSDALPLTGIVLTKLDGDSRGGAALSVRHIT 270 Query: 283 KIPVYFLGVGEGINDLEPF 301 P+ F GV E ++ LE F Sbjct: 271 GKPIKFAGVAEKLDGLEAF 289 >gi|323344206|ref|ZP_08084432.1| signal recognition particle protein [Prevotella oralis ATCC 33269] gi|323094935|gb|EFZ37510.1| signal recognition particle protein [Prevotella oralis ATCC 33269] Length = 449 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/210 (33%), Positives = 108/210 (51%), Gaps = 7/210 (3%) Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 S RP ++L+ G+ G GKTT GKL+ + S +L A D +R AAIDQLK+ ++ Sbjct: 95 LSGRPAIVLMSGLQGSGKTTFSGKLANMLKSKQKRNPLLVACDVYRPAAIDQLKVVGEQV 154 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + +A A K+A+AK DV+I+DTAGRL + +M I ++ L Sbjct: 155 GVPVYSEPDSKNVIEIATHAVKEAKAKGNDVVIVDTAGRLAIDEEMMTEISELKNALN-- 212 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + I P Sbjct: 213 ----PDETLFVVDSMTGQDAVNTAKEFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVTKP 268 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F+G GE + ++ F + I G D Sbjct: 269 IKFVGTGEKMEAIDVFHPSRMADRILGMGD 298 >gi|225022019|ref|ZP_03711211.1| hypothetical protein CORMATOL_02051 [Corynebacterium matruchotii ATCC 33806] gi|305681063|ref|ZP_07403870.1| signal recognition particle protein [Corynebacterium matruchotii ATCC 14266] gi|224945216|gb|EEG26425.1| hypothetical protein CORMATOL_02051 [Corynebacterium matruchotii ATCC 33806] gi|305659268|gb|EFM48768.1| signal recognition particle protein [Corynebacterium matruchotii ATCC 14266] Length = 538 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 93/318 (29%), Positives = 152/318 (47%), Gaps = 30/318 (9%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L ++ + S ++ + V E+ L+ +D+ + V + ++ + + Sbjct: 2 FESLSDRLSAALSGLRSKGKVTEADVNTVSREIRLALLEADVSLPVVRGFIKRIKERALG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS ++V+ V+E + +L ++ N P VI++ G+ G GKTT+ GKL Sbjct: 62 VEVSKALNPAEQVIKIVNEELTTILGGETRRMNVS-KKPPTVIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR-----------TSADFVCSEIGS---D 177 + + + G +L A D R A+ QL+I +R TS D + E+G+ D Sbjct: 121 AYSLKEQGHTPILVACDLQRPGAVQQLQIVGERAGVPTFAPDPGTSLDTLEHEMGTSHGD 180 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 A+A +A+ KK D +I+DTAGRL + LM + IR D P V V+ Sbjct: 181 PVAVARAGVAEARQKKHDYVIVDTAGRLGIDETLMTQ-ARNIR-----DAIQPDEVFFVI 234 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA GQ+A+ E F TG+++TK+DG ARGG + I P+ F GE + D Sbjct: 235 DAMIGQDAVTTAEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPIMFASTGEKMTD 294 Query: 298 LEPFVAKDFSAVITGCLD 315 + F + I G D Sbjct: 295 FDVFHPDRMANRILGMGD 312 >gi|27229036|ref|NP_080406.1| signal recognition particle receptor subunit alpha [Mus musculus] gi|47117310|sp|Q9DBG7|SRPR_MOUSE RecName: Full=Signal recognition particle receptor subunit alpha; Short=SR-alpha; AltName: Full=Docking protein alpha; Short=DP-alpha gi|12836553|dbj|BAB23706.1| unnamed protein product [Mus musculus] gi|26332409|dbj|BAC29922.1| unnamed protein product [Mus musculus] Length = 636 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 87/302 (28%), Positives = 145/302 (48%), Gaps = 41/302 (13%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96 SR + V +++ D LI ++ +A ++ E + K K + + V V + + + L Sbjct: 332 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 391 Query: 97 MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + + +P + RP+V+ GVNGVGK+T + K+S + + G V++AA Sbjct: 392 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 451 Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193 DTFR+ A++QL+ R +A G DAA +A EA A+ + Sbjct: 452 CDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 511 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252 DV+++DTAGR+ +N+ LM + K+I V + P VL V +A G A+ Q+ F Sbjct: 512 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 565 Query: 253 -----HAVAGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 H++A T G+++TK D + G I + P+ F+G G+ DL Sbjct: 566 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 625 Query: 303 AK 304 AK Sbjct: 626 AK 627 >gi|257427951|ref|ZP_05604349.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus 65-1322] gi|293501045|ref|ZP_06666896.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus 58-424] gi|257274792|gb|EEV06279.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus 65-1322] gi|291096050|gb|EFE26311.1| signal recognition particle protein [Staphylococcus aureus subsp. aureus 58-424] Length = 455 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/269 (29%), Positives = 135/269 (50%), Gaps = 13/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V ++ ++ + + DV Q+V+ V + + K++ + N Sbjct: 39 LLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+++VG+ G GKTT GKL+ M K ML A D +R AAI+QL+ + Sbjct: 98 NKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQID 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + A K A+ + +D +IIDTAGRLH + LM + ++ + K Sbjct: 158 IPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAK--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P+ ++ V+D+ TGQ+A+ E F TG+ +TK+DG RGG + I + P+ Sbjct: 215 ---PNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGVALSIRSVTQKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+ E ++ LE F + ++ I G D Sbjct: 272 KFVGMSEKLDGLELFHPERMASRILGMGD 300 >gi|149027816|gb|EDL83276.1| signal recognition particle receptor ('docking protein') [Rattus norvegicus] Length = 622 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 87/302 (28%), Positives = 145/302 (48%), Gaps = 41/302 (13%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96 SR + V +++ D LI ++ +A ++ E + K K + + V V + + + L Sbjct: 318 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 377 Query: 97 MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + + +P + RP+V+ GVNGVGK+T + K+S + + G V++AA Sbjct: 378 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 437 Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193 DTFR+ A++QL+ R +A G DAA +A EA A+ + Sbjct: 438 CDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 497 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252 DV+++DTAGR+ +N+ LM + K+I V + P VL V +A G A+ Q+ F Sbjct: 498 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 551 Query: 253 -----HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 H++A T G+++TK D + G I + P+ F+G G+ DL Sbjct: 552 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 611 Query: 303 AK 304 AK Sbjct: 612 AK 613 >gi|297626601|ref|YP_003688364.1| GTP binding signal recognition particle protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922366|emb|CBL56938.1| GTP binding signal recognition particle protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 523 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/281 (27%), Positives = 138/281 (49%), Gaps = 14/281 (4%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V ++ V ++ + + ++S Q+++ V+E + +L Sbjct: 28 DATTREIRIALLEADVALPVVKEFVAKVKERAHGLELSKALNPTQQIVKIVNEELIDILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + P VI++ G+ G GKTT+ GKL + + G +L A D R A+ Q Sbjct: 88 GRTREIRFSKGTDPTVIMLAGLQGAGKTTLAGKLGHWLREQGHSPVLVAADLQRPNAVQQ 147 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L++ +R + G+ D ++ E+ +A+ K DV+I+DTAGRL + +MA Sbjct: 148 LQVIGERAGVPVFAPQPGNGVGDPVQVSRESLDEARHKLYDVIIVDTAGRLGVDEEMMAQ 207 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + + P+ L V+DA GQ+A+ + F G G++++K+DG ARGG Sbjct: 208 AHDIKAAV------TPNETLFVVDAMIGQDAVNTAKAFEQGVGIDGVVLSKLDGDARGGA 261 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F GE + D + F ++ I G D Sbjct: 262 ALSIARVIGKPIMFASNGENLTDFDLFHPDRMASRILGMGD 302 >gi|282877590|ref|ZP_06286405.1| signal recognition particle protein [Prevotella buccalis ATCC 35310] gi|281300162|gb|EFA92516.1| signal recognition particle protein [Prevotella buccalis ATCC 35310] Length = 445 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/196 (35%), Positives = 105/196 (53%), Gaps = 7/196 (3%) Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRT 165 +P +IL+ G+ G GKTT GKL+ + K +L A D +R AAI+QLK+ + Sbjct: 95 LESKPAIILMSGLQGSGKTTFSGKLANLLKSKQRKNPLLVACDVYRPAAIEQLKVVGGQV 154 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + D A+A +A +QA+AK DV+IIDTAGRL + +M I ++ Sbjct: 155 GVEVYSEPDNKDVVAIAKQAIQQAKAKGNDVVIIDTAGRLAVDEEMMDEIARL------K 208 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 D P L V+DA TGQ+A+ + F+ G+++TK+DG RGG + I P Sbjct: 209 DAVHPDETLFVVDAMTGQDAVNTAKEFNDRLDFNGVVLTKLDGDTRGGAALSIRTVVTKP 268 Query: 286 VYFLGVGEGINDLEPF 301 + F+G GE + ++ F Sbjct: 269 IKFVGTGEKMEAIDVF 284 >gi|157825358|ref|YP_001493078.1| Signal recognition particle protein [Rickettsia akari str. Hartford] gi|157799316|gb|ABV74570.1| Signal recognition particle protein [Rickettsia akari str. Hartford] Length = 449 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 148/290 (51%), Gaps = 16/290 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----LTKRYAKDVSV-QRVLYDVS 89 I++ ++D+ +R+ + L+ SD+ + V + + E+ L K VS Q ++ + Sbjct: 21 ILTEAQIDNAMRD-IRVALLESDVALPVIKDFIAEVKKNALGHEVIKSVSPGQMIIKIIH 79 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 E + +L + + +P + L+VG+ G GKTT GKL+ ++ + KV+L + D Sbjct: 80 EEMINLLASSESETKLNLNSKPPINFLMVGLQGSGKTTASGKLALRLKNQNKKVLLVSLD 139 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 T+R AA +QL I A+ + + G + A +A+ DV+I DTAGR + Sbjct: 140 TYRPAAQEQLAILANSVQINSLPIVQGEQPLDIVTRAIAEAKISAYDVVIYDTAGRTQID 199 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 +M + +++ P L V+D+ TGQ+A+ F+ +GLI++++DG Sbjct: 200 QEMMEEALAIKNIVE------PTETLLVIDSMTGQDAVVTASNFNKKLEISGLILSRIDG 253 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 ++GG + + K P+ FL GE + DLE F A+ ++ I LD G+ Sbjct: 254 DSKGGAALSVKYITKKPIKFLSSGEKLTDLEEFNAERLASRI---LDMGD 300 >gi|295094758|emb|CBK83849.1| signal recognition particle protein [Coprococcus sp. ART55/1] Length = 448 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/304 (27%), Positives = 150/304 (49%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ + S L +D V+E ++++ L+ +D+ V + V+ + + Sbjct: 3 FDSLSDKLQNVFKKLRSKGVLTEDDVKEAMKEVKRALLEADVNFKVVKSFVKSVSDRAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V V+ V E + K++ S+ +I++ G+ G GKTT KL Sbjct: 63 EEVLKGLNPGHMVIKIVKEEMDKLMGSEMTEIKLRPSNEITIIMMCGLQGAGKTTTAAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + + G K +L A D +R AAI QL++ ++ + +A A + A Sbjct: 123 AYQFKNKGKKPLLVACDVYRPAAIKQLQVNGEKVGVPVFAMGDNNKPLDIAKAAVQHAAK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 ++++ +DTAGRLH + +M ++ + + LD +++L V D+ TGQ+A+ Sbjct: 183 NNINLVFLDTAGRLHVDEDMM---NELAEIKENLD--IAYTILTV-DSMTGQDAVNVATT 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G G+I+TK+DG RGG + I P+ + G+GE + DLEPF ++ I Sbjct: 237 FNDKIGIDGVILTKLDGDTRGGAALSIKAVTGKPILYSGMGEKLTDLEPFYPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|303254469|ref|ZP_07340574.1| signal recognition particle protein [Streptococcus pneumoniae BS455] gi|303258923|ref|ZP_07344902.1| signal recognition particle protein [Streptococcus pneumoniae SP-BS293] gi|303264276|ref|ZP_07350196.1| signal recognition particle protein [Streptococcus pneumoniae BS397] gi|302598555|gb|EFL65596.1| signal recognition particle protein [Streptococcus pneumoniae BS455] gi|302639866|gb|EFL70322.1| signal recognition particle protein [Streptococcus pneumoniae SP-BS293] gi|302646088|gb|EFL76315.1| signal recognition particle protein [Streptococcus pneumoniae BS397] Length = 523 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 108/204 (52%), Gaps = 11/204 (5%) Query: 115 LVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 ++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 105 MMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DVPVFA 162 Query: 174 IGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 +G++ A + + +QAQ D ++IDTAGRL + +LM +R +K L P+ Sbjct: 163 LGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL--AQPN 216 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 +L V+DA GQ A F+A TG+I+TK+DG RGG + + P+ F G Sbjct: 217 EILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGT 276 Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315 GE I D+E F S+ I G D Sbjct: 277 GEKITDIETFHPDRMSSRILGMGD 300 >gi|18256022|gb|AAH21839.1| Signal recognition particle receptor ('docking protein') [Mus musculus] Length = 636 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 87/302 (28%), Positives = 145/302 (48%), Gaps = 41/302 (13%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96 SR + V +++ D LI ++ +A ++ E + K K + + V V + + + L Sbjct: 332 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 391 Query: 97 MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + + +P + RP+V+ GVNGVGK+T + K+S + + G V++AA Sbjct: 392 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 451 Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193 DTFR+ A++QL+ R +A G DAA +A EA A+ + Sbjct: 452 CDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 511 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252 DV+++DTAGR+ +N+ LM + K+I V + P VL V +A G A+ Q+ F Sbjct: 512 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 565 Query: 253 -----HAVAGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 H++A T G+++TK D + G I + P+ F+G G+ DL Sbjct: 566 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 625 Query: 303 AK 304 AK Sbjct: 626 AK 627 >gi|157150208|ref|YP_001450412.1| signal recognition particle protein [Streptococcus gordonii str. Challis substr. CH1] gi|157075002|gb|ABV09685.1| signal recognition particle protein [Streptococcus gordonii str. Challis substr. CH1] Length = 524 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 109/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QA+ D ++IDTAGRL + LM + ++ L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKTNHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F++ TG+I+TK+DG RGG + + P+ Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|166713052|ref|ZP_02244259.1| signal recognition particle protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 458 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/275 (29%), Positives = 138/275 (50%), Gaps = 22/275 (8%) Query: 39 RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 R ++ +RE E+ L+ +D+ + V Q ++E + + ++V Q ++ V + Sbjct: 21 RLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKIVRD 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149 + ++ + N + P ++L+ G+ G GKTT +GKL+K + + K VM+ + D Sbjct: 81 ELTAVMGAAAADLNLNVPA-PAIVLMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADV 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI+QLK A++ F S+ + A A+ VDVL++DTAGRL + Sbjct: 140 YRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDARKSFVDVLLVDTAGRLAIDQ 199 Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 +M I + HA P L V+DA TGQ+A + F TG+++TK Sbjct: 200 AMMDEIKAL---------HAAVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKT 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 DG ARGG + + P+ F+G GE + L+ F Sbjct: 251 DGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVF 285 >gi|308173560|ref|YP_003920265.1| signal recognition particle-like (SRP) GTPase [Bacillus amyloliquefaciens DSM 7] gi|307606424|emb|CBI42795.1| signal recognition particle-like (SRP) GTPase [Bacillus amyloliquefaciens DSM 7] gi|328553507|gb|AEB23999.1| signal recognition particle protein [Bacillus amyloliquefaciens TA208] gi|328911701|gb|AEB63297.1| signal recognition particle-like (SRP) GTPase [Bacillus amyloliquefaciens LL3] Length = 446 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 112/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K +L A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A ++A+ + D +I+DTAGRLH + LM + + V Sbjct: 159 PVFSLGDQVSPVEIARQAIEKAKEEHHDYVILDTAGRLHIDHELMDELSGVKEVAN---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+D+ TGQ+A+ + F+ G TG+++TK+DG RGG + I + P+ Sbjct: 215 --PEEIFLVVDSMTGQDAVNVAKSFNDQLGLTGVVLTKLDGDTRGGAALSIRAVTETPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ LE F + ++ I G D Sbjct: 273 FAGMGEKLDALEAFHPERMASRILGMGD 300 >gi|291454407|ref|ZP_06593797.1| signal recognition particle protein [Streptomyces albus J1074] gi|291357356|gb|EFE84258.1| signal recognition particle protein [Streptomyces albus J1074] Length = 568 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/284 (29%), Positives = 140/284 (49%), Gaps = 18/284 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + ++++ + ++VS Q+++ V+E + +L Sbjct: 80 DATAREIRIALLEADVALPVVRAFIKQVKERALGEEVSKALNPAQQIIKIVNEELVGILG 139 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + P VI++ G+ G GKTT+ GKL K + G +L A D R A++Q Sbjct: 140 GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGKWLQGQGHTPLLVAADLQRPNAVNQ 198 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R E G+ D +A ++ A+ K+ DV+++DTAGRL + LM Sbjct: 199 LSVVAERAGVGIFAPEPGNGVGDPVQVAKDSIAHARTKQYDVVVVDTAGRLGIDQELMQQ 258 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D P VL V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 259 AAD-IR-----DAVQPDEVLFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 312 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + I + F GE + D + F ++ I LD G+ Sbjct: 313 ALSIAHVTGKQIMFASNGEKLEDFDAFHPDRMASRI---LDMGD 353 >gi|262282312|ref|ZP_06060080.1| signal recognition particle protein [Streptococcus sp. 2_1_36FAA] gi|262261603|gb|EEY80301.1| signal recognition particle protein [Streptococcus sp. 2_1_36FAA] Length = 524 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 109/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + D Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G++ A + + +QA+ D ++IDTAGRL + LM + ++ L Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKVNHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+DA GQ A F++ TG+I+TK+DG RGG + + P+ Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|103488205|ref|YP_617766.1| signal recognition particle protein [Sphingopyxis alaskensis RB2256] gi|98978282|gb|ABF54433.1| signal recognition particle subunit FFH/SRP54 (srp54) [Sphingopyxis alaskensis RB2256] Length = 484 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/269 (29%), Positives = 140/269 (52%), Gaps = 13/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + V + V+++ ++V SV Q+V+ V++ + +ML + + Sbjct: 38 LLEADVALPVVRSFVDQVTELAIGQNVLRSVTPGQQVVKIVNDALTEMLGSETAELDLAV 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166 + P VI++VG+ G GKTT K++K++ + K V++A+ D R AA +QL + + Sbjct: 98 AP-PAVIMMVGLQGSGKTTTTAKIAKRLREKERKKVLMASLDVNRPAAQEQLAVLGQQID 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + +G +A A + A+ + DVL++DTAGRLH + LM + + R Sbjct: 157 VATLPIIVGQQPVEIAQRALQAAKLQGYDVLMLDTAGRLHVDQQLMDEMQAVSRTAN--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+D+ TGQ+A++ + F TG+++T+MDG ARGG + + P+ Sbjct: 214 ---PAETLLVVDSLTGQDAVQVAQRFTDQVPLTGVVLTRMDGDARGGAALSMRAVTGKPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE ++ LE F + I G D Sbjct: 271 KFAGTGEKLDGLELFQPSRIAGRILGMGD 299 >gi|260831512|ref|XP_002610703.1| hypothetical protein BRAFLDRAFT_202369 [Branchiostoma floridae] gi|229296070|gb|EEN66713.1| hypothetical protein BRAFLDRAFT_202369 [Branchiostoma floridae] Length = 629 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 122/231 (52%), Gaps = 33/231 (14%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 +RP+ I GVNGVGK+T + K+ + + G +V++AA DTFR+ A++QL+ A R +A Sbjct: 407 QNRPYTITFCGVNGVGKSTNLAKICFWLVENGFRVLIAACDTFRAGAVEQLRTHARRMAA 466 Query: 168 -------------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 G DAA +A EA A+ +++DV+++DTAGR+ +N LM Sbjct: 467 LHPPEHHSGVKMVQLYEKGYGKDAAGIAMEAINFAREQRIDVVLVDTAGRMQDNEPLMRA 526 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT---------GLIMT 264 + K+I+V + P VL V +A G +++ Q+ F+ A+A + G+++T Sbjct: 527 LSKLIKV------NQPELVLFVGEALVGNDSVDQLTKFNQALADFSSMENPRLIDGILLT 580 Query: 265 KMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 K D + G I + T PV F+G G+ DL+ A + AV+ L Sbjct: 581 KFDTIDDKVGAAISMTYTTGQPVVFVGTGQTYTDLK---ALNVQAVVNALL 628 >gi|257784652|ref|YP_003179869.1| signal recognition particle protein [Atopobium parvulum DSM 20469] gi|257473159|gb|ACV51278.1| signal recognition particle protein [Atopobium parvulum DSM 20469] Length = 459 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 85/273 (31%), Positives = 133/273 (48%), Gaps = 12/273 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ V ++ V E+ +T + +S Q V+ V + + +L Sbjct: 33 EIRMALLEADVNYKVVKEFVGRCKEQCMTADVLESLSPAQNVVRIVLDELTALLGSTESK 92 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 + P+VI++VG+ G GKTT KL+ + G +LAA D R AA DQL+ Sbjct: 93 LTLAQNRIPNVIMLVGLQGSGKTTAAAKLAYLLKSQGKNPLLAACDVHRPAAADQLETLG 152 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 + G DA A+A EA ++A D++I+DTAGRL + +M + R + Sbjct: 153 SEIGVPVYRGD-GKDAVAIASEAIQEAVDHLNDLVIVDTAGRLQIDEEMMEEAVAIKRAV 211 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 K P +L V+DA TGQ+ + V F G+IM+K+DG ARGGG + + Sbjct: 212 K------PDQILMVVDAMTGQDIVNVVSTFAERVDFDGVIMSKLDGDARGGGALSVREVT 265 Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+ +GE + LE F + I G D Sbjct: 266 GKPIKFVSMGEKPDSLEVFHPDRMAKRILGMGD 298 >gi|56964059|ref|YP_175790.1| signal recognition particle GTPase [Bacillus clausii KSM-K16] gi|56910302|dbj|BAD64829.1| signal recognition particle GTPase [Bacillus clausii KSM-K16] Length = 452 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 108/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT KL+ + K +L A D +R AAI QL+ + + Sbjct: 101 PTVVMMVGLQGAGKTTTTAKLANHLRKKHNRKPLLVACDVYRPAAIQQLETLGKQLNMPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 ++ +A EA A+A+ D ++IDTAGRLH + LMA + M + Sbjct: 161 FSKGTDANPVDIAKEAVAAAKAEHHDYVLIDTAGRLHVDETLMAELQDMKAAV------T 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P +L V+D+ TGQ+A+ E F+ TG ++TK+DG RGG I I P+ F Sbjct: 215 PDEILLVVDSMTGQDAVNVAESFNNQLDVTGAVLTKLDGDTRGGAAISIKAVTNTPIKFA 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+GE I+ LEPF ++ I G D Sbjct: 275 GMGEKIDQLEPFHPDRMASRILGMGD 300 >gi|324999618|ref|ZP_08120730.1| signal recognition particle protein [Pseudonocardia sp. P1] Length = 522 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 89/315 (28%), Positives = 144/315 (45%), Gaps = 27/315 (8%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + D+ RL D E+ L+ +D+ + V + + + + Sbjct: 2 FDSLSERLGSTLRDLRGKGRLSDADIDATAREIRIALLEADVALPVVRGFIARIKERAKG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L ++ N P VI++ G+ G GKTT+ GKL Sbjct: 62 SEVSQALNPAQQVVKIVNEELVTILGGETRRLNL-AKEPPTVIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-----------DAAA 180 ++ + G +L A D R A++QL+I +R G+ D Sbjct: 121 ARWLKGQGHTPLLVACDLQRPNAVNQLQIVGERAGVQTFAPHPGATGSGELPEGPGDPVG 180 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 +A A+ K+ DV+++DTAGRL + LM + + P VL V+DA Sbjct: 181 VARGGIAHAREKQYDVVVVDTAGRLGVDEELMRQASDIRTAVD------PDEVLFVVDAM 234 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQ+A+ E F G TG+++TK+DG ARGG + + P+ F GE + D + Sbjct: 235 IGQDAVATAEAFRDGVGFTGVVLTKLDGDARGGAALSVREVTGQPILFASNGEKLEDFDV 294 Query: 301 FVAKDFSAVITGCLD 315 F S+ I G D Sbjct: 295 FHPDRMSSRILGMGD 309 >gi|328865257|gb|EGG13643.1| signal recognition particle receptor alpha subunit [Dictyostelium fasciculatum] Length = 607 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 87/284 (30%), Positives = 141/284 (49%), Gaps = 36/284 (12%) Query: 46 REELEDLLIR-------SDIGVAVAQKIVEELLTKRYAKDVSVQR-----VLYDVSELIH 93 +E+LE +L + ++ + +A+K+VE + + K +S + V + E + Sbjct: 317 KEDLEPVLQKFVGHLTSKNVALDIAEKLVESIGSSLEGKKLSTFQGVTTVVKTAMEESLT 376 Query: 94 KMLMP-----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 ++L P + K RP+ I+ GVNGVGK+T + K+ + G +VMLAA D Sbjct: 377 RILTPKKHIDILKDIQLLKGSRPYAIVFSGVNGVGKSTNLAKVCYWLKANGHRVMLAACD 436 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFRS AI+QL A R + G DAA++A +A + A+ K DV++IDT GR+ NN Sbjct: 437 TFRSGAIEQLGTHAARLDVELFERGYGKDAASIAGDAIEYARQTKHDVVLIDTTGRMQNN 496 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF------------HAVA 256 LM + K++ + + VL V +A G + + Q+ F + V Sbjct: 497 EPLMRALSKLV------NQNTIDLVLFVGEALVGNDGVDQLTKFDKSLSLLSDASKNNVR 550 Query: 257 GTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 G+I+TK D + G I +V + P+ FLG G+ DL+ Sbjct: 551 TIDGIILTKFDTIDDKVGAAISMVYSTGHPIIFLGTGQNYTDLK 594 >gi|307330030|ref|ZP_07609181.1| signal recognition particle protein [Streptomyces violaceusniger Tu 4113] gi|306884291|gb|EFN15326.1| signal recognition particle protein [Streptomyces violaceusniger Tu 4113] Length = 514 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/284 (29%), Positives = 140/284 (49%), Gaps = 21/284 (7%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + ++++ + +VS Q+V+ V+E + +L Sbjct: 28 DATAREIRIALLEADVALPVVRSFIKQVKERSLGAEVSQALNPAQQVIKIVNEELVGILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + P VI++ G+ G GKTT+ GKL + + G +L A D R A++Q Sbjct: 88 GEARRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGRWLKGQGHAPLLVACDLQRPNAVNQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM-- 212 L + A+R E G+ D +A ++ + A+ K+ DV+I+DTAGRL + LM Sbjct: 147 LSVVAERAGVAVFAPEPGNGVGDPVKVAQDSIEFARTKQHDVVIVDTAGRLGIDEELMRQ 206 Query: 213 -AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 A I +R P VL V+DA GQ+A+ E F G G++++K+DG AR Sbjct: 207 AADIRDAVR---------PDEVLFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDAR 257 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 GG + I + F GE ++D + F ++ I G D Sbjct: 258 GGAALSIAHVTGRQIMFASNGEKLDDFDAFYPDRMASRILGMGD 301 >gi|290957104|ref|YP_003488286.1| signal recognition particle protein [Streptomyces scabiei 87.22] gi|260646630|emb|CBG69727.1| signal recognition particle protein [Streptomyces scabiei 87.22] Length = 516 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/284 (28%), Positives = 143/284 (50%), Gaps = 18/284 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + ++ + + DVS Q+VL V+E + +L Sbjct: 28 DATAREIRIALLEADVALPVVRAFIKNVKERALGSDVSKALNPAQQVLKIVNEELVGILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + P VI++ G+ G GKTT+ GKL + + G +L A D R A++Q Sbjct: 88 GETRRLRF-AKNPPTVIMLAGLQGAGKTTLAGKLGHWLKEQGHSPLLVACDLQRPNAVNQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R E G+ D +A ++ + A++K D++++DTAGRL + +M Sbjct: 147 LSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEFAKSKVHDIVVVDTAGRLGIDQEMMQQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P +L V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + I P+ F GE +++ + F ++ I LD G+ Sbjct: 261 ALSIASVTGKPIMFASNGEKLDEFDAFHPDRMASRI---LDMGD 301 >gi|242037271|ref|XP_002466030.1| hypothetical protein SORBIDRAFT_01g050330 [Sorghum bicolor] gi|241919884|gb|EER93028.1| hypothetical protein SORBIDRAFT_01g050330 [Sorghum bicolor] Length = 624 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 28/278 (10%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFN--- 104 L+D L+ ++ +A+K+ E + K + S R+ V + L+ + P Sbjct: 345 LKDRLMAKNVAEEIAEKLCESVAASLEGKKLGSFTRISSTVQTAMEDALLRILTPRRSID 404 Query: 105 -------WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 RP+VI+ VGVNGVGK+T + K++ + L V LAA DTFRS A++Q Sbjct: 405 ILRDVHAAKERGRPYVIVFVGVNGVGKSTNLAKVAYWLLQHNLSVTLAACDTFRSGAVEQ 464 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ A R D A +A EA ++A K DV+++DTAGR+ +N LM + K Sbjct: 465 LRTHARRLQIPIFEKGYEKDPAVVAREAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSK 524 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-------AVAGTT---GLIMTKMD 267 +I + ++P VL V +A G +A+ Q+ F+ AV G+++TK D Sbjct: 525 LINL------NSPDLVLFVGEALVGNDAVDQLTKFNQKLADLSAVPTARLIDGILLTKFD 578 Query: 268 G-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 + G + +V PV F+G G+ DL+ K Sbjct: 579 TIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVK 616 >gi|314984434|gb|EFT28526.1| signal recognition particle protein [Propionibacterium acnes HL005PA1] Length = 528 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/284 (27%), Positives = 144/284 (50%), Gaps = 18/284 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D ++ L+ +D+ ++V ++ V + + + +++S Q+++ V+E + ++L Sbjct: 28 DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + P ++++ G+ G GKTT+ GKL++ + G +LAA D R A+ Q Sbjct: 88 GQTRTVRFAKTP-PTIVMLAGLQGAGKTTLAGKLARWFKEEGHSPLLAACDLQRPNAVTQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L++ +R E G+ D +A +A +A+ K DV+IIDTAGRL ++ +MA Sbjct: 147 LQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAEAEHKLYDVVIIDTAGRLGVDAEMMAQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + P L V+DA GQ+A+ F G G+++TK+DG ARGG Sbjct: 207 AADIKTATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFDGVVLTKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + + P+ F GEG+ D + F ++ I LD G+ Sbjct: 261 ALSLARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301 >gi|329764770|ref|ZP_08256364.1| GTP-binding signal recognition particle [Candidatus Nitrosoarchaeum limnia SFB1] gi|329138734|gb|EGG42976.1| GTP-binding signal recognition particle [Candidatus Nitrosoarchaeum limnia SFB1] Length = 441 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/301 (27%), Positives = 150/301 (49%), Gaps = 25/301 (8%) Query: 28 LKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRY-------- 75 L++ I I+ S +D+ + +EL + L++SD+ V + +I ++L + Sbjct: 9 LRDAIKKIVKSSGIDEELIKELSKDVQRALLQSDVNVRLVLEITKQLEARSLNETPPPGL 68 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKK 134 ++ + ++LYD ++ L K ++DF ++ + I+++G+ G GKTTV KL+K Sbjct: 69 SRKDHIVKILYD------ELAKLLGKETDFDFKPNKQNKIIMLGIQGSGKTTVTAKLAKF 122 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 ++ G V + DT+R A+ QLK ++++ + D+ + K + + Sbjct: 123 LTKQGYSVGVIGADTYRPGALVQLKTMCEKSNVEVYGEPNNKDSPDIVKNGLKHYENLPL 182 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D++IIDTAGR L++ + ++ +V P + V+D T GQ Q E FH Sbjct: 183 DIIIIDTAGRHKEEKDLLSEMEQINKV------SNPDLAILVIDGTIGQQCFNQAEAFHK 236 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 G+I+TK+D +A+GGG I + ++G GE I+DLE F F + G Sbjct: 237 TIPVGGIIITKLDSSAKGGGAIAASAATGAQIMYVGTGERIDDLEKFSPTRFVGRLLGMG 296 Query: 315 D 315 D Sbjct: 297 D 297 >gi|303389022|ref|XP_003072744.1| signal recognition particle protein Srp54 [Encephalitozoon intestinalis ATCC 50506] gi|303301886|gb|ADM11384.1| signal recognition particle protein Srp54 [Encephalitozoon intestinalis ATCC 50506] Length = 466 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/292 (28%), Positives = 147/292 (50%), Gaps = 16/292 (5%) Query: 32 ITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRV 84 +++++ SR D + ++++ LI S++ + EL + A ++ RV Sbjct: 13 LSNLLRSRATDQDIEAAIKEICHSLILSNVNPRYVSNLRNELKARLDPSGMAPGLNKARV 72 Query: 85 LYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143 + + V E + +L P +K + + + +I+ VG+ G GKTT I K + G KV Sbjct: 73 VQNAVYEKLVDLLDPKAKGYKIE-KGKTSIIVFVGLQGSGKTTSICKYANFYKKKGFKVG 131 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 + DTFR+ A DQ++ A + F S +D +A ++ + ++ +V+++DT+G Sbjct: 132 IVCADTFRAGAFDQVRQNALKIKVPFFGSS-EADPVKVAGAGVERFRRERFEVILVDTSG 190 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 R S L + ++R ++ P S++ V+DA GQ+A Q F +I+ Sbjct: 191 RHTQESELFVEMKDIMREVR------PDSIVFVMDAGIGQSAEDQAIGFKKAVNVGSIIL 244 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TK+DGT + GG I V P+ F+G GEG+ DLE F A+ F + + G D Sbjct: 245 TKIDGTNKAGGAISSVAATGCPIEFVGNGEGMEDLEVFDARRFVSRMLGMGD 296 >gi|295135662|ref|YP_003586338.1| signal recognition particle protein [Zunongwangia profunda SM-A87] gi|294983677|gb|ADF54142.1| signal recognition particle protein [Zunongwangia profunda SM-A87] Length = 442 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 109/211 (51%), Gaps = 7/211 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADR 164 + S P VIL+ G+ G GKTT GKL+ + + K +L A D +R AAI+QL + ++ Sbjct: 94 NLSGDPSVILMSGLQGSGKTTFSGKLANYLKNKKTKKPLLVACDVYRPAAINQLHVVGEQ 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + E D A++ A A+ +V+IIDTAGRL + +M I + ++ Sbjct: 154 LGVEVFSDEGNQDPVAISKAAIAHAKENGHNVVIIDTAGRLAVDEAMMTEISNIHTAIE- 212 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 PH L V+D+ TGQ+A+ + F+ G+I+TK+DG RGG I I Sbjct: 213 -----PHETLFVVDSMTGQDAVNTAKAFNDRLDFDGVILTKLDGDTRGGAAISIKSVVNK 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE ++ ++ F + I G D Sbjct: 268 PIKFIGTGEKMDAIDVFYPSRMADRILGMGD 298 >gi|89098672|ref|ZP_01171554.1| Signal recognition particle, subunit Ffh/SRP54 [Bacillus sp. NRRL B-14911] gi|89086634|gb|EAR65753.1| Signal recognition particle, subunit Ffh/SRP54 [Bacillus sp. NRRL B-14911] Length = 449 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 109/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + +L A D +R AAI QL+ + + Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRNPLLVAADIYRPAAIKQLETLGKQINMPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 +A +A +A+ D ++IDTAGRLH + LM + K I+ L + Sbjct: 161 FSLGDQVSPVEIARQAIAKAKEDHHDYVLIDTAGRLHVDEALMDEL-KQIKELSK----- 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P + V+DA TGQ+A+ + F+ G TG+++TK+DG RGG + I P+ F+ Sbjct: 215 PDEIFLVVDAMTGQDAVNVAQSFNEQLGLTGVVLTKLDGDTRGGAALSIRSVTSTPIKFV 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+GE ++ +E F + ++ I G D Sbjct: 275 GLGEKMDAIEAFHPERMASRILGMGD 300 >gi|86742276|ref|YP_482676.1| signal recognition particle subunit FFH/SRP54 (srp54) [Frankia sp. CcI3] gi|86569138|gb|ABD12947.1| signal recognition particle subunit FFH/SRP54 (srp54) [Frankia sp. CcI3] Length = 517 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/281 (29%), Positives = 137/281 (48%), Gaps = 15/281 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + V + + +VS Q+V+ V+E + +L Sbjct: 28 DATAREIRVALLEADVALPVVRGFVAAVKERARGAEVSASLNPAQQVIKIVNEELVAILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 + + + P VIL+ G+ G GKTT+ GKL + + G +L A D R A++Q Sbjct: 88 GGTTTLRYAKTP-PTVILLAGLQGTGKTTLAGKLGRWLKAQGHTPLLVAADLQRPNAVNQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L++ R + E G+ D +A +A A + DV+++DTAGRL + +M Sbjct: 147 LQVVGARAGVEVFAPEPGNGVGDPVRVARDALAHAHRQVFDVVVVDTAGRLGVDEEMMRQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P +L VLDA GQ+A+ F G +G+++TK+DG ARGG Sbjct: 207 AAD-IR-----DAVSPDEILFVLDAMIGQDAVATASAFADGVGFSGVVLTKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ F GE ++D + F + ++ I G D Sbjct: 261 ALSVAQVTGRPIMFASTGEALDDFDVFHPERMASRILGMGD 301 >gi|48146167|emb|CAG33306.1| SRPR [Homo sapiens] Length = 638 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 145/302 (48%), Gaps = 41/302 (13%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96 SR + V +++ D LI ++ +A ++ E + K K + + V V + + + L Sbjct: 334 SREDMESVLDKMRDHLIAKNVAADIAVQLWESVANKLEGKVMGTFSTVTSTVKQALQESL 393 Query: 97 MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + + +P + RP+V+ GVNGVGK+T + K+S + + G V++AA Sbjct: 394 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 453 Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193 DTFR+ A++QL+ R SA G DAA +A EA A+ + Sbjct: 454 CDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 513 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252 DV+++DTAGR+ +N+ LM + K+I V + P VL V +A G A+ Q+ F Sbjct: 514 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 567 Query: 253 -----HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 H++A T G+++TK D + G I + P+ F+G G+ DL Sbjct: 568 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 627 Query: 303 AK 304 AK Sbjct: 628 AK 629 >gi|149238239|ref|XP_001524996.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] gi|146451593|gb|EDK45849.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] Length = 562 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/285 (29%), Positives = 142/285 (49%), Gaps = 29/285 (10%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP---- 98 D V ++ + LI +I A+ I++++ + K V++ +++ + K+L P Sbjct: 276 DEVSKKFYEQLISKNIAPGTAKAIIDKIKARLSGKKVTMTIFKQALTDELTKILTPNVST 335 Query: 99 -LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 L + + RP+VI VVGVNGVGK+T + KL+ L V++ A DTFRS A++Q Sbjct: 336 DLLYEIKRNNTGRPYVISVVGVNGVGKSTNLAKLAYWFLQNNLNVLICACDTFRSGAVEQ 395 Query: 158 LKIWADR----TSADFVCSEI---------GSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 LK+ + S S+I G A +A + A+A DV++IDTAGR Sbjct: 396 LKVHVNNLNQLNSGLSNKSQIDIYEKGYGGGDHVVTTAKQAIEYAKANAFDVVLIDTAGR 455 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG---- 260 H+N+ LMA + K D P+ ++ V +A G +++ Q F+ G Sbjct: 456 THSNAKLMAPLKKF------GDAANPNKIIMVGEALVGTDSVEQATNFNQAFGNKRSLDF 509 Query: 261 LIMTKMDGTAR-GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 I++K+D G +I +V+ K+P+ F+G G+ D++ K Sbjct: 510 FIVSKVDTVGDLVGTMINMVMATKVPILFVGTGQTYTDIKRLSVK 554 >gi|282859593|ref|ZP_06268697.1| signal recognition particle protein [Prevotella bivia JCVIHMP010] gi|282587644|gb|EFB92845.1| signal recognition particle protein [Prevotella bivia JCVIHMP010] Length = 453 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 85/280 (30%), Positives = 139/280 (49%), Gaps = 15/280 (5%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99 V E L+D+ L+ +D+ VA+ + + TK +V + + + +L+H L L Sbjct: 26 NVAETLKDVRRALLDADVNYKVAKSFTDTVKTKALGMNVLTAVKPGQLMVKLVHDELADL 85 Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAID 156 + + RP +IL+ G+ G GKTT GKL+ + K +L A D +R AAI+ Sbjct: 86 MGGEAVGLKLTSRPAIILMSGLQGSGKTTFTGKLANMLKAKEHKTPLLVACDVYRPAAIE 145 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QLK+ ++ + + +A A +A+AK DV+IIDTAGRL + +M I Sbjct: 146 QLKVVGEQVNVPVYSEPENKNVNEIATHAIAEAKAKGNDVVIIDTAGRLAIDEDMMNEI- 204 Query: 217 KMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 + L H P L V+D+ TGQ+A+ + F+ G+++TK+DG RGG Sbjct: 205 ------ESLKNHVNPDETLFVVDSMTGQDAVNTAKEFNDRLDFNGVVLTKLDGDTRGGAA 258 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F+G GE + ++ F + + I G D Sbjct: 259 LSIRTVVTKPIKFIGTGEKMEAIDVFHPERMADRILGMGD 298 >gi|154147877|ref|YP_001406144.1| signal recognition particle protein [Campylobacter hominis ATCC BAA-381] gi|153803886|gb|ABS50893.1| signal recognition particle protein [Campylobacter hominis ATCC BAA-381] Length = 444 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/217 (32%), Positives = 111/217 (51%), Gaps = 9/217 (4%) Query: 99 LSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 L+ P N F S P V+L+ G+ G GKTT KL+ + KV++AA D R AA+ Sbjct: 79 LTAPGNQGFVFASQNPTVVLMAGLQGSGKTTTTVKLANYLKLRKKKVLIAACDLQRLAAV 138 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 +QL+ + + E + +A EA +A+ DVL+IDTAGRL + LM + Sbjct: 139 EQLRQLCEANEIELFYIENEKNPKKVAKEAILKAKKGLYDVLLIDTAGRLAIDEELMDEL 198 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 ++ ++ P + V DA +GQ+ +R F+ G +G+I++K D +GG Sbjct: 199 KEIKKI------SNPDEIFYVADAMSGQDGVRSAANFNEKLGISGVILSKFDADTKGGVA 252 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + I IP+ F+G GE I D E F+ + + I G Sbjct: 253 LGIAKQLNIPLRFIGTGEKIADFEGFIPERIVSRIMG 289 >gi|295396043|ref|ZP_06806227.1| signal recognition particle protein [Brevibacterium mcbrellneri ATCC 49030] gi|294971131|gb|EFG47022.1| signal recognition particle protein [Brevibacterium mcbrellneri ATCC 49030] Length = 552 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 85/294 (28%), Positives = 145/294 (49%), Gaps = 21/294 (7%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L ++ RL D E+ L+ +D+ + V + + + + Sbjct: 2 FNSLSDRLTSTFKNLRGKGRLSEADVDATIREIRRALLDADVALPVVRAFTGRVRERALS 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGK 130 +VS Q+V+ V++ + ++L K F+ +P VI++ G+ G GKTT+ GK Sbjct: 62 AEVSEALNPGQQVVKIVNDELVQILG--GKTRRIQFAKKPPTVIMLAGLQGAGKTTLAGK 119 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187 L+ + G + ML A D R A++QL++ R A E G+ D +A ++ + Sbjct: 120 LAHWLKSDGHRPMLVAADLQRPNAVNQLEVVGSRAGAYVYAPEPGNGVGDPVKVARDSME 179 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A++K DV+I+DTAGRL + LM + + P VL V+DA GQ+A+ Sbjct: 180 VAKSKLYDVVIVDTAGRLGIDEELMQQASDIRAAVN------PDEVLFVIDAMIGQDAVT 233 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F+ TG++++K+DG +RGG + + P+ F GEG+ D E F Sbjct: 234 TAQAFNEGVDFTGVVLSKLDGDSRGGAALSVAEVTGKPIMFASTGEGLKDFELF 287 >gi|48477967|ref|YP_023673.1| signal recognition particle protein Srp54 [Picrophilus torridus DSM 9790] gi|48430615|gb|AAT43480.1| signal recognition particle protein Srp54 [Picrophilus torridus DSM 9790] Length = 456 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 106/206 (51%), Gaps = 8/206 (3%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P I++VG+ G GKTT GKL++ GL V L A D R A +QL+ + + ++ F Sbjct: 96 KPQTIMLVGLYGNGKTTTAGKLARFFIKKGLSVGLIAADVHRPGAYEQLEQISKQVNSLF 155 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + D + + KV IIDT+GR + L+ I ++ +K Sbjct: 156 YGEKNEKDPVKIIKNGLDRLGDAKVK--IIDTSGRDSLDDELIDEIKRIKNEIK------ 207 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P VL V+DAT GQ Q ++ + +G+I+TKMDGT +GGG + V K PVYF+ Sbjct: 208 PDEVLYVVDATLGQQVGPQAKVLNDAVSISGVIITKMDGTGKGGGALSAVAEIKSPVYFI 267 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE + D E F + F + + G D Sbjct: 268 GTGEHMEDFEVFNPRKFLSRLLGMGD 293 >gi|66819967|ref|XP_643640.1| signal recognition particle 54 kDa subunit [Dictyostelium discoideum AX4] gi|75009097|sp|Q75K18|SRP54_DICDI RecName: Full=Signal recognition particle 54 kDa protein; Short=SRP54 gi|60471522|gb|EAL69478.1| signal recognition particle 54 kDa subunit [Dictyostelium discoideum AX4] Length = 542 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 123/243 (50%), Gaps = 19/243 (7%) Query: 81 VQRVLYDVSELIHKML---MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137 +++V++D ELI ++L +PL KP + ++++ VG+ G GKTT + KL+ Sbjct: 75 IKQVVFD--ELI-RLLDPGVPLWKPTKG----KSNIVMFVGLQGAGKTTSVTKLAYFYKK 127 Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197 G + DTFR+ A DQ++ A + + SE D +A + +++ Sbjct: 128 KGFSTAIVCADTFRAGAFDQVRHNAAKAKIHYYGSETEKDPVVVARTGVDIFKKDGTEII 187 Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257 I+DT+GR +S L + ++ +K P + + V+D++ GQ A Q F + Sbjct: 188 IVDTSGRHKQDSELFEEMKQIETAVK------PDNCIFVMDSSIGQAAYEQATAFRSSVK 241 Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317 +I+TKMDG + GGG I V P+ F+G GE + DLE F D S ++ L YG Sbjct: 242 VGSIIITKMDGNSMGGGAISAVAATNTPIIFIGTGEHLTDLELF---DPSTFVSKLLGYG 298 Query: 318 EEK 320 + K Sbjct: 299 DMK 301 >gi|107021668|ref|YP_619995.1| signal recognition particle protein [Burkholderia cenocepacia AU 1054] gi|116688614|ref|YP_834237.1| signal recognition particle protein [Burkholderia cenocepacia HI2424] gi|206561770|ref|YP_002232535.1| signal recognition particle protein [Burkholderia cenocepacia J2315] gi|254246394|ref|ZP_04939715.1| Signal recognition particle protein [Burkholderia cenocepacia PC184] gi|105891857|gb|ABF75022.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia cenocepacia AU 1054] gi|116646703|gb|ABK07344.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia cenocepacia HI2424] gi|124871170|gb|EAY62886.1| Signal recognition particle protein [Burkholderia cenocepacia PC184] gi|198037812|emb|CAR53756.1| signal recognition particle protein [Burkholderia cenocepacia J2315] Length = 455 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 108/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT +GKL+K + + KV+ + D +R AAI QLK ++ ADF Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIMQLKTVTEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S +A A A+ DVL++DTAGRL + +M I + LK Sbjct: 164 FPSTPDQKPVDIALAAVDWAKRHYHDVLLVDTAGRLGIDEAMMQEIAALHGTLK------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG +RGG + + P+ F+ Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F + I G D Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303 >gi|229586415|ref|YP_002844916.1| Signal recognition particle protein [Rickettsia africae ESF-5] gi|228021465|gb|ACP53173.1| Signal recognition particle protein [Rickettsia africae ESF-5] Length = 449 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 149/290 (51%), Gaps = 16/290 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89 I++ ++D +R+ + L+ SD+ + V + + E+ K ++V SV Q ++ + Sbjct: 21 ILTEAQIDAAMRD-IRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIH 79 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 E + +L + + +P V L+VG+ G GKTT KL+ ++ + KV+L + D Sbjct: 80 EEMINLLASSKSETKLNLNSKPPVNFLMVGLQGSGKTTASSKLALRLRNQNKKVLLVSLD 139 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 T+R AA +QL I A+ + + G + A +A+ DV+I DTAGR + Sbjct: 140 TYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAIAEAKISAYDVVIYDTAGRTQID 199 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 +M + ++++ P L V+D+ TGQ+A+ F+ +GLI++++DG Sbjct: 200 KAMMEEALAIKKIVE------PTETLLVIDSMTGQDAVVTASSFNEKLAISGLILSRIDG 253 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 ++GG + + K P+ FL GE + DLE F A+ ++ I LD G+ Sbjct: 254 DSKGGAALSVKYITKKPIKFLSSGENLIDLEEFDAERLASRI---LDMGD 300 >gi|70951146|ref|XP_744837.1| signal recognition particle receptor alpha subunit, [Plasmodium chabaudi chabaudi] gi|56524952|emb|CAH76902.1| signal recognition particle receptor alpha subunit, putative [Plasmodium chabaudi chabaudi] Length = 532 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/204 (35%), Positives = 113/204 (55%), Gaps = 18/204 (8%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + + I +GVNGVGK+T + K+ + G LK+M+AA DTFR+ AI+QL+I A Sbjct: 325 KLYSICFLGVNGVGKSTNLAKVCYYLKSKGNLKIMIAACDTFRAGAIEQLRIHAKCLDVH 384 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 G +AAA+A +A A+ +K DV++IDTAGR+ +N LM +GK+I + + Sbjct: 385 LFEKGYGKNAAAIAKDAISYAKKEKYDVILIDTAGRMQDNEPLMRSLGKLILI------N 438 Query: 229 APHSVLQVLDATTGQNALRQVEMFH-----AVAGTT-----GLIMTKMDGT-ARGGGLIP 277 P +L V +A G +A+ Q++ F+ A T G+I+TK D + G + Sbjct: 439 NPDLILFVGEALVGNDAIDQLKKFNQTLIDATCDTNKRTIDGIILTKFDTVDDKVGTALS 498 Query: 278 IVVTHKIPVYFLGVGEGINDLEPF 301 +V P+ F+GVG+ L+ F Sbjct: 499 MVYLTGRPIVFVGVGQKYTHLKKF 522 >gi|120603184|ref|YP_967584.1| signal recognition particle protein [Desulfovibrio vulgaris DP4] gi|120563413|gb|ABM29157.1| signal recognition particle subunit FFH/SRP54 (srp54) [Desulfovibrio vulgaris DP4] Length = 508 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 86/307 (28%), Positives = 147/307 (47%), Gaps = 22/307 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + +LD+ ++E L ++ L+ +D+ V + ++ + + Sbjct: 2 FDSLSDRLTQAFRKFSGQSQLDENNIQEGLREVRLALLEADVNFKVVKDFIDRVKERCLG 61 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVI 128 +DV Q+V+ +++H L+ L + R P VI++VG+ G GKTT Sbjct: 62 QDVLKSLTPAQQVV----KVVHDELVELLGGGTTELDLRGAQPGVIMMVGLQGSGKTTSS 117 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 K++ + ++ L D +R AAIDQL A + + S + A Sbjct: 118 AKIANLLRKRKMRPYLVPVDVYRPAAIDQLVTLARQLDIPYYQSTPDMKPLDIVRAALAD 177 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K+ +++DTAGRLH + LM + + +P +L V DA TGQ+A+ Sbjct: 178 AKEKQCTAVLLDTAGRLHVDEALMDELAALKATF------SPQEILFVADAMTGQDAVTV 231 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F+ G TG+++TKMDG ARGG + I V ++G+GE ++D+E F + Sbjct: 232 ADAFNEKLGITGVVLTKMDGDARGGAALSIKSVTGASVKYVGIGEKLSDIEVFHPDRVAG 291 Query: 309 VITGCLD 315 I G D Sbjct: 292 RILGMGD 298 >gi|322779356|gb|EFZ09612.1| hypothetical protein SINV_09353 [Solenopsis invicta] Length = 654 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 85/295 (28%), Positives = 146/295 (49%), Gaps = 41/295 (13%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP- 98 V E+L+D LI ++ +AQK+ + + TK K D V +++ + ++L P Sbjct: 358 VLEKLKDHLITKNVAADIAQKLCDSVGTKLEGKILGTFDSVANTVKTTLTDALVQILSPK 417 Query: 99 -----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 L S +P+V+ GVNGVGK+T + K+ + + +V++AA DTFR+ Sbjct: 418 RRIDILRDALEAKKSSKPYVMTFCGVNGVGKSTNLAKICFWLIENNFRVLIAACDTFRAG 477 Query: 154 AIDQLKI-------------WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 A++QL+ +++ G DAA +A EA + A+ ++DV+++D Sbjct: 478 AVEQLRTHMRHLNALHPPEKHGNQSMVQLYEKGYGKDAAGIAMEAIRFAKDSRIDVVLVD 537 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT 259 TAGR+ +N LM + K+I+V + P VL V +A G A+ Q+ F+ A+A + Sbjct: 538 TAGRMQDNEPLMRALAKLIKV------NEPDLVLFVGEALVGNEAVDQLVKFNQALADYS 591 Query: 260 ---------GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 G+++TK D + G I + P+ F+G G+ DL+ AK Sbjct: 592 QSANPHIIDGIVLTKFDTIDDKVGAAITMTYITGQPIVFVGTGQTYTDLKSLNAK 646 >gi|51892603|ref|YP_075294.1| signal recognition particle [Symbiobacterium thermophilum IAM 14863] gi|51856292|dbj|BAD40450.1| signal recognition particle [Symbiobacterium thermophilum IAM 14863] Length = 454 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/205 (35%), Positives = 109/205 (53%), Gaps = 6/205 (2%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P +I++ G+ G GKTT KL+ K+ G K +L A D +R AAI QL++ ++ Sbjct: 100 PTIIMLCGLQGAGKTTHAAKLALKLKKEGKKPLLVAADVYRPAAIKQLEVLGEQVGVPVY 159 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + +A A A ++ DV+I+DTAGRL + LM + ++ ++ P Sbjct: 160 SEGDQASPVDIAQHAVAYAAEERRDVIIVDTAGRLTIDEELMEELQQIKARIQ------P 213 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 H L VLDA GQ+A+ E FH G G+I+TK+DG RGG + + P+ F+G Sbjct: 214 HDTLLVLDAMIGQDAVTTAEHFHTKLGIDGVILTKLDGDTRGGAALSVREVTGRPIKFVG 273 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 VGE ++ LEPF ++ I G D Sbjct: 274 VGEKLDALEPFYPDRLASRILGMGD 298 >gi|34580832|ref|ZP_00142312.1| signal recognition particle protein [Rickettsia sibirica 246] gi|28262217|gb|EAA25721.1| signal recognition particle protein [Rickettsia sibirica 246] Length = 449 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 149/290 (51%), Gaps = 16/290 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89 I++ ++D +R+ + L+ SD+ + V + + E+ K ++V SV Q ++ + Sbjct: 21 ILTEAQIDAAMRD-IRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIH 79 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 E + +L + + +P V L+VG+ G GKTT KL+ ++ + KV+L + D Sbjct: 80 EEMINLLASSKSETKLNLNSKPPVNFLMVGLQGSGKTTASSKLALRLRNQNKKVLLVSLD 139 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 T+R AA +QL I A+ + + G + A +A+ DV+I DTAGR + Sbjct: 140 TYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAIAEAKISAYDVVIYDTAGRTQID 199 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 +M + ++++ P L V+D+ TGQ+A+ F+ +GLI++++DG Sbjct: 200 KAMMEEALAIKKIVE------PTETLLVIDSMTGQDAVVTASSFNEKLAISGLILSRIDG 253 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 ++GG + + K P+ FL GE + DLE F A+ ++ I LD G+ Sbjct: 254 DSKGGAALSVKYITKKPIKFLSSGENLIDLEEFDAERLASRI---LDMGD 300 >gi|126327281|ref|XP_001365549.1| PREDICTED: similar to Proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 [Monodelphis domestica] Length = 634 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 87/302 (28%), Positives = 145/302 (48%), Gaps = 41/302 (13%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96 SR + V +++ D LI ++ +A ++ E + K K + + V V + + + L Sbjct: 330 SREDMESVLDKMRDHLIAKNVAADIALQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 389 Query: 97 MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + + +P + RP+V+ GVNGVGK+T + K+S + + V++AA Sbjct: 390 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENNFSVLIAA 449 Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193 DTFR+ A++QL+ R SA G DAA +A EA A+ + Sbjct: 450 CDTFRAGAVEQLRTHTRRLSALHPPENHGGRTMVHLFEKGYGKDAAGIAMEAISFARNQA 509 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252 DV+++DTAGR+ +N+ LM + K+I V + P VL V +A G A+ Q+ F Sbjct: 510 FDVVLVDTAGRMQDNAPLMTALAKLIAV------NTPDLVLFVGEALVGNEAVDQLVKFN 563 Query: 253 -----HAVAGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 H++A T G+++TK D + G I + P+ F+G G+ +DL Sbjct: 564 KALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYSDLRSLN 623 Query: 303 AK 304 AK Sbjct: 624 AK 625 >gi|265751175|ref|ZP_06087238.1| signal recognition particle protein [Bacteroides sp. 3_1_33FAA] gi|263238071|gb|EEZ23521.1| signal recognition particle protein [Bacteroides sp. 3_1_33FAA] Length = 440 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 67/197 (34%), Positives = 109/197 (55%), Gaps = 9/197 (4%) Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 RP VIL+ G+ G GKTT GKL++ + + K +L A D +R AAI+QL++ ++ Sbjct: 95 LESRPAVILMSGLQGSGKTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIEQLRVLGEQI 154 Query: 166 SADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 V SE+ S + +A A +A+AK D++I+DTAGRL + +M I + + + Sbjct: 155 EVP-VYSELDSKNPVQIALNAIHEAKAKGYDLVIVDTAGRLAIDEQMMNEIEAIKKAIN- 212 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P L V+D+ TGQ+A+ F+ G+++TK+DG RGG + I Sbjct: 213 -----PDETLFVVDSMTGQDAVNTAREFNERLDFNGVVLTKLDGDTRGGAALSIRTVVNK 267 Query: 285 PVYFLGVGEGINDLEPF 301 P+ F+G GE ++ ++ F Sbjct: 268 PIKFVGTGEKLDAIDQF 284 >gi|302542213|ref|ZP_07294555.1| signal recognition particle protein [Streptomyces hygroscopicus ATCC 53653] gi|302459831|gb|EFL22924.1| signal recognition particle protein [Streptomyces himastatinicus ATCC 53653] Length = 521 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 83/281 (29%), Positives = 140/281 (49%), Gaps = 15/281 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + ++++ + +VS Q+V+ V+E + +L Sbjct: 28 DATAREIRIALLEADVALPVVRSFIKQVKERSLGAEVSQALNPAQQVIKIVNEELIGILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + P VI++ G+ G GKTT+ GKL + + G +L A D R A++Q Sbjct: 88 GDARRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGRWLKGQGHAPLLVACDLQRPNAVNQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R E G+ D +A ++ + A+ K+ DV+I+DTAGRL + LM Sbjct: 147 LSVVAERAGVAVFAPEPGNGVGDPVKVAQDSIEFAKTKQHDVVIVDTAGRLGIDEELMRQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P VL V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 207 AAD-IR-----DAVSPDEVLFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I + F GE ++D + F ++ I G D Sbjct: 261 ALSIAHVTGRQIMFASNGEKLDDFDAFHPDRMASRILGMGD 301 >gi|15639407|ref|NP_218856.1| signal recognition particle protein (ffh) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025649|ref|YP_001933421.1| signal recognition particle protein [Treponema pallidum subsp. pallidum SS14] gi|3322699|gb|AAC65403.1| signal recognition particle protein (ffh) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018224|gb|ACD70842.1| signal recognition particle protein [Treponema pallidum subsp. pallidum SS14] gi|291059804|gb|ADD72539.1| signal recognition particle protein [Treponema pallidum subsp. pallidum str. Chicago] Length = 452 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 103/207 (49%), Gaps = 10/207 (4%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +IL++G+ G GKTT KL+ + DAG +LAA D R+AA QL + Sbjct: 103 IILLLGLQGSGKTTSAAKLAAYLKDAGRSPLLAACDHVRAAASAQLAVLGTHIGVPVYQH 162 Query: 173 EIGSDAAALAYE----AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + + A + A + A++ DVLIIDTAGRLH ++ LM + + L Sbjct: 163 ALPHEQQPCALDTARGALQYARSHGNDVLIIDTAGRLHVDAALMQELILLKETL------ 216 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P L V DA TGQ +R E FHA G +G++++K D RGG + + P+ F Sbjct: 217 VPVETLLVADALTGQTVVRIAEEFHAAVGISGVVLSKFDSDTRGGAALSLKSITGQPLLF 276 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +G GE D EPF + + I G D Sbjct: 277 VGTGERPQDFEPFHPERAAGRILGMGD 303 >gi|257055023|ref|YP_003132855.1| signal recognition particle subunit FFH/SRP54 (srp54) [Saccharomonospora viridis DSM 43017] gi|256584895|gb|ACU96028.1| signal recognition particle subunit FFH/SRP54 (srp54) [Saccharomonospora viridis DSM 43017] Length = 515 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 82/281 (29%), Positives = 141/281 (50%), Gaps = 15/281 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V ++ ++ + + +VS Q+V+ V+E + +L Sbjct: 31 DATAREIRIALLEADVALPVVREFIKHVKERAKGAEVSQALNPAQQVIKIVNEELIAILG 90 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ N + P VI++ G+ G GKTT+ GKL++ + G +L A D R A+ Q Sbjct: 91 GETRRLNLAKTP-PSVIMLAGLQGSGKTTLAGKLARWLKKQGHTPLLVACDLQRPNAVTQ 149 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L++ +R E G+ D +A+ + ++A+ + DV+I+DTAGRL + +M Sbjct: 150 LQVVGERAGVTTFAPEPGNGVGDPVDVAHRSIEEARRAQHDVVIVDTAGRLGVDEEMMRQ 209 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P L V+DA GQ+A+ E F G TG+++TK+DG ARGG Sbjct: 210 AAD-IR-----DAISPDETLFVVDAMIGQDAVTTAEAFRDGVGFTGVVLTKLDGDARGGA 263 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ F GE + D + F ++ I G D Sbjct: 264 ALSVRHVTGKPILFASNGEKLEDFDVFHPDRMASRILGMGD 304 >gi|219851208|ref|YP_002465640.1| signal recognition particle protein Srp54 [Methanosphaerula palustris E1-9c] gi|219545467|gb|ACL15917.1| GTP-binding signal recognition particle SRP54 G- domain protein [Methanosphaerula palustris E1-9c] Length = 440 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 86/270 (31%), Positives = 131/270 (48%), Gaps = 10/270 (3%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNW 105 ++L+ LI+SD+ V + + + + T+ ++ + V V ++++ L+ L P Sbjct: 32 KDLQRALIQSDVNVKLVMNLSQAIKTRSLEEEPLKGMGVREHVLRIVYQELVGLMGP-EV 90 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + + IL+ G+ G GKTT KL++ GL+V + GDTFR A Q+ + Sbjct: 91 EVTLGQQTILMAGLQGSGKTTTTAKLARYFQRKGLRVAVICGDTFRPGAYQQISTLCQKI 150 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + +DA + + K + +VLIIDT GR L G+ + I L L Sbjct: 151 NVPCFGDPNETDAVKIVTKGLKSV--GQAEVLIIDTQGR----HALEEGLIQEIVDLNTL 204 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 A H L V+DA GQ A Q FH G+I+TKMDGTA+GGG + V K Sbjct: 205 S-KATHRWL-VIDAALGQQASEQARRFHQAIDIDGVIITKMDGTAKGGGALSAVAETKSG 262 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F+G GE I DLE F F + + G D Sbjct: 263 IVFIGSGETIEDLERFDPDGFISRLLGMGD 292 >gi|187934489|ref|YP_001885443.1| signal recognition particle protein [Clostridium botulinum B str. Eklund 17B] gi|187722642|gb|ACD23863.1| signal recognition particle protein [Clostridium botulinum B str. Eklund 17B] Length = 452 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/268 (29%), Positives = 131/268 (48%), Gaps = 12/268 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + + + +K +V Q+V+ V+E + ++ N+ Sbjct: 39 LLEADVNYKVVKGFISTVSSKCVGNEVLESLTPGQQVIKIVNEELTNLMGGSESKINYS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S VI++VG+ G GKTT+ GKL+ ++ K +L A D +R AAI QL+I + Sbjct: 98 SSGTTVIMLVGLQGAGKTTMCGKLALELRKNNKKPLLVACDVYRPAAIKQLEIVGKQIEI 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + +A + +++IIDTAGRLH + LM + + + Sbjct: 158 PVFSMGDKVNPVDIAKAGIAHGKDNGNNIIIIDTAGRLHIDEALMQELQDIKENVN---- 213 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ TGQ+A+ E F+ TG+I+TK+DG RGG + I + P+ Sbjct: 214 --PSEILLVVDSMTGQDAVNVAESFNKDLDVTGVILTKLDGDTRGGAALSIRSITEKPIK 271 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 ++G GE ++D E F S+ I G D Sbjct: 272 YIGTGEKLSDFEVFHPDRMSSRILGMGD 299 >gi|330466283|ref|YP_004404026.1| signal recognition particle protein [Verrucosispora maris AB-18-032] gi|328809254|gb|AEB43426.1| signal recognition particle protein [Verrucosispora maris AB-18-032] Length = 515 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 80/281 (28%), Positives = 137/281 (48%), Gaps = 15/281 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + + + + +VS Q+++ V+E + +L Sbjct: 28 DATAREIRLALLEADVALPVVKGFIANVKERARGAEVSQALNPAQQIIKIVNEELVTVLG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 + + P VI++ G+ G GKTT+ GKL++ + G + +L A D R A+ Q Sbjct: 88 GEGRRLQF-AKQPPTVIMLAGLQGSGKTTLAGKLARWLKAQGHQPLLVAADLQRPNAVGQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L++ R + E G+ D +A + + A+ DV+I+DTAGRL ++ +M Sbjct: 147 LQVLGGRAGVEVYAPEPGNGVGDPVQVAKASLEHARRAARDVVIVDTAGRLGIDAEMMQQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D P V+ V+DA GQ+A+R E F G TG++++K+DG ARGG Sbjct: 207 AAD-IR-----DAVDPDEVIFVIDAMVGQDAVRTAEAFRDGVGITGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ F GE + D + F ++ I G D Sbjct: 261 ALSVREVTGQPILFASTGEKLEDFDVFHPDRMASRILGMGD 301 >gi|154483576|ref|ZP_02026024.1| hypothetical protein EUBVEN_01280 [Eubacterium ventriosum ATCC 27560] gi|149735486|gb|EDM51372.1| hypothetical protein EUBVEN_01280 [Eubacterium ventriosum ATCC 27560] Length = 452 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 112/203 (55%), Gaps = 6/203 (2%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 VI+++G+ G GKTT K++ K+ G + +L A D +R AAI+QLKI ++ Sbjct: 106 VIMMMGLQGAGKTTTTAKIAGKLKAKGKRPLLVACDVYRPAAIEQLKINGEKQQVPVFSM 165 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 +A A + A+ +V+I+DTAGRLH + +M +++ + R + + Sbjct: 166 GDKQKPLNIAKAAIEHAKKNNNNVVILDTAGRLHVDEDMM---NELVEI--RDNIELTQT 220 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 VL V+DA TGQ+A+ + F+ G G+I+TK+DG RGG + I P+ ++G+G Sbjct: 221 VL-VVDAMTGQDAVNVAKEFNEKIGIDGIIVTKLDGDTRGGAALSIKAITGKPILYIGMG 279 Query: 293 EGINDLEPFVAKDFSAVITGCLD 315 E ++DLE F ++ I G D Sbjct: 280 EKLSDLEQFHPDRMASRILGMGD 302 >gi|15892137|ref|NP_359851.1| signal recognition particle protein [Rickettsia conorii str. Malish 7] gi|28380155|sp|Q92J55|SRP54_RICCN RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog gi|15619266|gb|AAL02752.1| signal recognition particle protein [Rickettsia conorii str. Malish 7] Length = 449 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 149/290 (51%), Gaps = 16/290 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89 I++ ++D +R+ + L+ SD+ + V + + E+ K ++V SV Q ++ + Sbjct: 21 ILTEAQIDAAMRD-IRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIH 79 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 E + +L + + +P V L+VG+ G GKTT KL+ ++ + KV+L + D Sbjct: 80 EEMINLLASSKSETKLNLNSKPPVNFLMVGLQGSGKTTASSKLALRLRNQNKKVLLVSLD 139 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 T+R AA +QL I A+ + + G + A +A+ DV+I DTAGR + Sbjct: 140 TYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAIAEAKISAYDVVIYDTAGRTQID 199 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 +M + ++++ P L V+D+ TGQ+A+ F+ +GLI++++DG Sbjct: 200 KAMMEEALAIKKIVE------PTETLLVIDSMTGQDAVVTASSFNEKLAISGLILSRIDG 253 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 ++GG + + K P+ FL GE + DLE F A+ ++ I LD G+ Sbjct: 254 DSKGGAALSVKYITKKPIKFLSSGENLIDLEEFDAERLASRI---LDMGD 300 >gi|294664958|ref|ZP_06730270.1| signal recognition particle protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605265|gb|EFF48604.1| signal recognition particle protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 458 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 82/275 (29%), Positives = 139/275 (50%), Gaps = 22/275 (8%) Query: 39 RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 R ++ +RE E+ L+ +D+ + V Q ++E + + ++V Q ++ V + Sbjct: 21 RLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKVVRD 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149 + ++ + N + P ++L+ G+ G GKTT +GKL+K + + K VM+ + D Sbjct: 81 ELTAVMGAAATDLNLNVLA-PAIVLMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADI 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI+QLK A++ F S+ + A A+ VDVL++DTAGRL ++ Sbjct: 140 YRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDARKSFVDVLLVDTAGRLAIDA 199 Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 +M I + HA P L V+DA TGQ+A + F TG+++TK Sbjct: 200 AMMDEIKTL---------HAAVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKT 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 DG ARGG + + P+ F+G GE + L+ F Sbjct: 251 DGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVF 285 >gi|171920360|ref|ZP_02931692.1| signal recognition particle protein [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186701891|ref|ZP_02971545.1| signal recognition particle protein [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|171902787|gb|EDT49076.1| signal recognition particle protein [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186701199|gb|EDU19481.1| signal recognition particle protein [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 448 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 86/284 (30%), Positives = 140/284 (49%), Gaps = 26/284 (9%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV--------------LYDVSELI 92 E++++LL S+I +A+ V L+ K++ K++ + V L + + + Sbjct: 26 EDIKELL--SEIRIALLDADVNLLVVKKFIKNIKEKTVGLYVEANQKPADLVLKIIKDEL 83 Query: 93 HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFR 151 ++L +KP N S I++VG+ G GKTT GKL+ + K +L A D +R Sbjct: 84 VEILGKENKPVNTAKSQLK--IMMVGLQGSGKTTTTGKLANYFKNKYNKKPLLVAADIYR 141 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 AAIDQL+ A + DF E + A +A + +++I+DTAGRL N L Sbjct: 142 PAAIDQLRTLAKQVRVDF-WEEGTQRPDLIVKNALNKADENENNLIIVDTAGRLQTNEEL 200 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M +++ V K L+P V V+DA GQ+ + F+ TG+I+TK+D AR Sbjct: 201 MQ---ELVNVKKTLNPD---EVFLVVDAMAGQDIINVATEFNNWLKLTGIIVTKLDSDAR 254 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G ++ + IP+ F G GE I ++ F + + I G D Sbjct: 255 AGAVLSLTSLLNIPIKFTGTGEKIGSIDSFYPERMADRILGLGD 298 >gi|167586054|ref|ZP_02378442.1| signal recognition particle protein [Burkholderia ubonensis Bu] Length = 455 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 108/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT GKL+K + + KV+ + D +R AAI QLK +++ ADF Sbjct: 104 PAVILMAGLQGAGKTTTAGKLAKLLREKYKKKVLTVSCDVYRPAAIMQLKTVSEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S +A A A+ DVLI+DTAGRL + +M I + LK Sbjct: 164 FPSTPDQKPVDIALAAVDWAKRHYHDVLIVDTAGRLGIDEAMMQEIAALHATLK------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG +RGG + + P+ F+ Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F + I G D Sbjct: 278 GVAEKLDGLEIFHPDRMANRILGMGD 303 >gi|170731913|ref|YP_001763860.1| signal recognition particle protein [Burkholderia cenocepacia MC0-3] gi|169815155|gb|ACA89738.1| signal recognition particle protein [Burkholderia cenocepacia MC0-3] Length = 455 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 108/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT +GKL+K + + KV+ + D +R AAI QLK ++ ADF Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIMQLKTVTEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S +A A A+ DVL++DTAGRL + +M I + LK Sbjct: 164 FPSTPDQKPVDIALAAVDWAKRHYHDVLLVDTAGRLGIDEAMMQEIAALHGTLK------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG +RGG + + P+ F+ Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F + I G D Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303 >gi|160892788|ref|ZP_02073578.1| hypothetical protein CLOL250_00319 [Clostridium sp. L2-50] gi|156865829|gb|EDO59260.1| hypothetical protein CLOL250_00319 [Clostridium sp. L2-50] Length = 448 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 86/304 (28%), Positives = 149/304 (49%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ + S L +D V+E ++++ L+ +D+ V + ++ + + Sbjct: 3 FDSLSDKLQNVFKKLRSKGVLTEDDVKEAMKEVKRALLEADVNFKVVKSFIKAVSDRAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V V+ V E + K++ S+ VI++ G+ G GKTT KL Sbjct: 63 EEVLKGLNPGHMVIKIVKEEMDKLMGSDVTELKLLPSNEITVIMMCGLQGAGKTTTAAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + + G K +L A D +R AAI QL+I ++ +A A A+ Sbjct: 123 AYQFKNKGKKPLLVACDVYRPAAIKQLQINGEKVGVPVFTMGDNHKPLDIAKAAILHAEK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 ++++ IDTAGRLH + +M + ++ + + + ++VL V DA TGQ+A+ Sbjct: 183 NHMNLVFIDTAGRLHVDEDMMDELAEI-----KENINVTYTVLTV-DAMTGQDAVNVATT 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G G+I+TK+DG RGG + I P+ + G+GE + DLEPF ++ I Sbjct: 237 FNDKIGIDGVILTKLDGDTRGGAALSIKAVTGKPILYAGMGEKLTDLEPFYPSRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|255524258|ref|ZP_05391217.1| signal recognition particle protein [Clostridium carboxidivorans P7] gi|296185380|ref|ZP_06853790.1| signal recognition particle protein [Clostridium carboxidivorans P7] gi|255512083|gb|EET88364.1| signal recognition particle protein [Clostridium carboxidivorans P7] gi|296050214|gb|EFG89638.1| signal recognition particle protein [Clostridium carboxidivorans P7] Length = 454 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 85/305 (27%), Positives = 153/305 (50%), Gaps = 18/305 (5%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F + KL+E + + +S + + D +RE ++ L+ +D+ V + ++++ K Sbjct: 3 FEGLASKLQETLKKLRGKGKLSEKDIKDAMRE-VKLALLEADVNYKVVKDFIKKVSEKCL 61 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++V Q+V+ V++ + ++ + S +I++VG+ G GKTT+ GK Sbjct: 62 GEEVLKSLTPAQQVVKIVNDELSNLMGSTESGVQFS-SSGLTMIMLVGLQGAGKTTMAGK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + K +LAA D +R AAI QL++ + ++ A + A+ Sbjct: 121 LALQFRKKNKKPLLAACDIYRPAAIKQLQVVGKQIDVPVFAMGDKVSPVDISKGAIEYAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 ++V+IIDTAGRLH + LM + + +K P +L V+DA TGQ+A+ Sbjct: 181 NNGLNVVIIDTAGRLHIDEELMNELKDVKENVK------PDEILLVVDAMTGQDAVNVAN 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ +G+I+TK+DG RGG + I P+ F+G+GE ++D E F ++ I Sbjct: 235 SFNDQLDISGVILTKLDGDTRGGAALSIKAMTDKPIKFVGLGEKMSDFEVFHPDRMASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|163850093|ref|YP_001638136.1| signal recognition particle protein [Methylobacterium extorquens PA1] gi|163661698|gb|ABY29065.1| signal recognition particle protein [Methylobacterium extorquens PA1] Length = 520 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P IL+VG+ G GKTT K++++++ +V+LA+ DT R AA++QL + A + + Sbjct: 100 PVAILMVGLQGSGKTTTTAKIARRLNQRDKRRVLLASLDTRRPAAMEQLAVLAKQVEVES 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G A +A A + A+ DV+++DTAGR + LM ++ K Sbjct: 160 LPIVAGQSAVQIAKRAMETARLGGFDVVMLDTAGRTTVDEGLMNEAAEVKAATK------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH VL V DA TGQ+A+ F G TG+++T+MDG +RGG + + P+ + Sbjct: 214 PHEVLLVADALTGQDAVNTARAFDERLGVTGIVLTRMDGDSRGGAALSMRAVTGKPIKLV 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE ++ LE F + + I G D Sbjct: 274 GVGEKVDALEEFHPQRVANRILGMGD 299 >gi|163757330|ref|ZP_02164419.1| hypothetical protein HPDFL43_18007 [Hoeflea phototrophica DFL-43] gi|162284832|gb|EDQ35114.1| hypothetical protein HPDFL43_18007 [Hoeflea phototrophica DFL-43] Length = 542 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 111/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT K++ ++ K V++A+ DT R AA +QL+ ++T Sbjct: 113 PVVIMMVGLQGSGKTTTSAKIAARLEKRDRKKVLMASLDTRRPAAQEQLRQLGEQTGVAT 172 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ DV+I+DTAGR H + LMA +M + +R +PH Sbjct: 173 LPIIAGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMA---EMAEIKRRANPH- 228 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +L V DA TGQ+A+ F G +GL++T+MDG RGG + + P+ + Sbjct: 229 --EILLVADALTGQDAVNLARNFDERVGISGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 286 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE ++ LE F + + I G D Sbjct: 287 GTGEKMDALEEFHPRRVADRILGMGD 312 >gi|213964418|ref|ZP_03392618.1| signal recognition particle protein [Corynebacterium amycolatum SK46] gi|213952611|gb|EEB63993.1| signal recognition particle protein [Corynebacterium amycolatum SK46] Length = 537 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 112/218 (51%), Gaps = 19/218 (8%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS---- 166 P VI++ G+ G GKTT+ GKL++ ++D G +L A D R A+ QL+I A+R Sbjct: 100 PTVIMLAGLQGAGKTTLAGKLARYLTDQGHTPVLVACDLQRPGAVQQLEIVAERAGVPCF 159 Query: 167 ADFVCSEIGS---------DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 A F + + S + A+ A+ + DV+IIDTAGRL + +LM K Sbjct: 160 APFPGTSLDSTHEMGTSEDNPVDAAFRGLAYARQHRHDVVIIDTAGRLGIDEVLM----K 215 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 R ++ D PH VL V+D+ GQ+A+ + F TG+++TK+DG ARGG + Sbjct: 216 QARDIR--DAINPHEVLFVIDSMIGQDAVETAKAFRDGVDFTGVVLTKLDGDARGGAALS 273 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I P+ F GE + D + F ++ I G D Sbjct: 274 IREVTGKPILFASTGEKLEDFDVFHPDRMASRILGMGD 311 >gi|326335869|ref|ZP_08202048.1| signal recognition particle protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692013|gb|EGD33973.1| signal recognition particle protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 448 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 110/211 (52%), Gaps = 7/211 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 + S P VIL+ G+ G GKTT GKL+ + + K +L A D +R AAIDQL I ++ Sbjct: 94 NLSGNPSVILMSGLQGSGKTTFSGKLANFLKTKKNKKPLLVACDVYRPAAIDQLHIVGEQ 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 ++ +A + + A++ +V+IIDTAGRL + +M I ++ + + Sbjct: 154 IGVPVFSERGNNNPVDIAQKGLQYAKSNGFNVVIIDTAGRLAADEQMMKEIAEIHKAVN- 212 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P L V+DA TGQ+A+ + F+ V G+I+TK+DG RGG I I Sbjct: 213 -----PQETLFVVDAMTGQDAVNTAKAFNDVLDFDGVILTKLDGDTRGGAAISIKSVVNK 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE ++ ++ F + I G D Sbjct: 268 PIKFVGTGEKMDAIDVFYPDRMADRILGMGD 298 >gi|83719534|ref|YP_441696.1| signal recognition particle protein [Burkholderia thailandensis E264] gi|167580506|ref|ZP_02373380.1| signal recognition particle protein [Burkholderia thailandensis TXDOH] gi|167618615|ref|ZP_02387246.1| signal recognition particle protein [Burkholderia thailandensis Bt4] gi|257137865|ref|ZP_05586127.1| signal recognition particle protein [Burkholderia thailandensis E264] gi|83653359|gb|ABC37422.1| signal recognition particle protein [Burkholderia thailandensis E264] Length = 455 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 109/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +IL+ G+ G GKTT +GKL+K + + KV+ + D +R AAI QLK +++ ADF Sbjct: 104 PAIILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S +A A A+ DVL++DTAGRL + +M I + LK Sbjct: 164 FPSTPDQKPVDIANAAVDWAKRHYHDVLLVDTAGRLGIDEAMMQEIAALHAALK------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG +RGG + + P+ F+ Sbjct: 218 PVETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F + I G D Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303 >gi|296129315|ref|YP_003636565.1| signal recognition particle protein [Cellulomonas flavigena DSM 20109] gi|296021130|gb|ADG74366.1| signal recognition particle protein [Cellulomonas flavigena DSM 20109] Length = 536 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 93/319 (29%), Positives = 155/319 (48%), Gaps = 32/319 (10%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 FA+ S +L ++ + RL D E+ L+ +D+ V V ++ + + + Sbjct: 2 FATLSDRLTSTFKNLRTKGRLSEADIDATIREIRRALLDADVAVTVVRQFTGAVRERALS 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L ++ + P V+++ G+ G GKTT+ GKL Sbjct: 62 AEVSAALNPAQQVVKVVNEELVAILGGQTRTLAF-AKQPPTVVMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS------------ADFVCSEIGSDAA 179 + + + G +L A D R A+ QL++ +R AD V G+D Sbjct: 121 ALWLREQGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPHPGNQGADDVLP-AGADPV 179 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+A + A+ K+ DV+++DTAGRL ++ LMA IR D P VL V+DA Sbjct: 180 AVARAGVETARQKQHDVVVVDTAGRLGVDAELMAQASD-IR-----DAVQPDEVLFVVDA 233 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 GQ+A+ + F G TG++++K+DG ARGG + I P+ + GE + D E Sbjct: 234 MIGQDAVTTAQAFADGVGFTGVVLSKLDGDARGGAALSIASVTGRPIMYASTGEKLTDFE 293 Query: 300 PFVAKDFSAVITGCLDYGE 318 F ++ I LD G+ Sbjct: 294 VFHPDRMASRI---LDMGD 309 >gi|294500961|ref|YP_003564661.1| signal recognition particle protein [Bacillus megaterium QM B1551] gi|295706307|ref|YP_003599382.1| signal recognition particle protein [Bacillus megaterium DSM 319] gi|294350898|gb|ADE71227.1| signal recognition particle protein [Bacillus megaterium QM B1551] gi|294803966|gb|ADF41032.1| signal recognition particle protein [Bacillus megaterium DSM 319] Length = 447 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 108/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + +L A D +R AAI QL+ + S Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKYNRNPLLVAADIYRPAAIKQLETLGKQLSMSV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 +A +A A+ + D ++IDTAGRLH + LM + + I+ L Sbjct: 161 FSLGDQVSPVEIAKQAIAHAKEEHHDYVLIDTAGRLHVDENLMEEL-EQIKELSN----- 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P + V+DA TGQ+A+ + F+ G TG+++TK+DG RGG + I P+ F+ Sbjct: 215 PDEIFLVVDAMTGQDAVNVADSFNKQLGLTGVVLTKLDGDTRGGAALSIRAVTDTPIKFV 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+GE ++ +E F + ++ I G D Sbjct: 275 GLGEKMDAIEAFHPERMASRILGMGD 300 >gi|302381703|ref|YP_003817526.1| signal recognition particle protein [Brevundimonas subvibrioides ATCC 15264] gi|302192331|gb|ADK99902.1| signal recognition particle protein [Brevundimonas subvibrioides ATCC 15264] Length = 518 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 113/215 (52%), Gaps = 8/215 (3%) Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKI 160 P N + + P V+L+ G+ G GKTT KL+ +++ K VM+A+ DT R AA++QL Sbjct: 93 PLNLNATP-PAVLLMAGLQGSGKTTTSAKLALRLTKFDRKKVMMASLDTRRPAAMEQLAQ 151 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 + + G A + A A+ + DVLI+DTAGR+ + LM + ++ Sbjct: 152 LGKQIEVAVLPIVAGESAVQITRRALTSAKLQGFDVLILDTAGRITLDEGLMNEVAEVAA 211 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 + P + V D+ TGQ+A+R + FH TGLI+T+ DG RGG ++ + Sbjct: 212 I------ATPVETILVADSLTGQDAVRTAKAFHERLPLTGLILTRADGDGRGGAMLSMRA 265 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P+ ++G GE ++ LE F A+ + I G D Sbjct: 266 VTGLPIKYMGSGEKVDALEVFDARRVAGRILGQGD 300 >gi|218132452|ref|ZP_03461256.1| hypothetical protein BACPEC_00311 [Bacteroides pectinophilus ATCC 43243] gi|217992562|gb|EEC58564.1| hypothetical protein BACPEC_00311 [Bacteroides pectinophilus ATCC 43243] Length = 452 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 86/304 (28%), Positives = 150/304 (49%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ ++ RL + V+ L ++ L+ +D+ V ++ V+ + + Sbjct: 3 FDSLSDKLQNIFKNLRGKGRLSESDVKAALREVKMALLEADVNFKVVKQFVKSVEERAIG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + K++ + VI++ G+ G GKTT KL Sbjct: 63 QDVMESLTPGQMVIKIVNEEMIKLMGSETTEIALKSGSEITVIMMAGLQGAGKTTTTAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K G K +L A D +R AA++QLKI ++ + +A + A++ Sbjct: 123 AGKFKAQGRKPLLVACDVYRPAAVEQLKINGEKQGVPVFAMGTNQNPVDIAKAGIEHAKS 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +++I+DTAGRLH + +M + + I+ +D ++L V+D+ TGQ+A+ Sbjct: 183 NGNNIVILDTAGRLHVDEDMMTEL-QNIKSSVGVD----QTIL-VVDSMTGQDAVNVASS 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F G G+I+TK+DG RGG + I P+ + G+GE ++DLE F ++ I Sbjct: 237 FDEKIGIDGVILTKLDGDTRGGAALSIKAVTGKPILYAGMGEKLSDLEQFHPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|218528696|ref|YP_002419512.1| signal recognition particle protein [Methylobacterium chloromethanicum CM4] gi|218520999|gb|ACK81584.1| signal recognition particle protein [Methylobacterium chloromethanicum CM4] Length = 520 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P IL+VG+ G GKTT K++++++ +V+LA+ DT R AA++QL + A + + Sbjct: 100 PVAILMVGLQGSGKTTTTAKIARRLNQRDKRRVLLASLDTRRPAAMEQLAVLAKQVEVES 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G A +A A + A+ DV+++DTAGR + LM ++ K Sbjct: 160 LPIVAGQSAVQIAKRAMEAARLGGFDVVMLDTAGRTTVDEGLMNEAAEVKAATK------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH VL V DA TGQ+A+ F G TG+++T+MDG +RGG + + P+ + Sbjct: 214 PHEVLLVADALTGQDAVNTARAFDERLGVTGIVLTRMDGDSRGGAALSMRAVTGKPIKLV 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE ++ LE F + + I G D Sbjct: 274 GVGEKVDALEEFHPQRVANRILGMGD 299 >gi|76811591|ref|YP_334886.1| signal recognition particle protein [Burkholderia pseudomallei 1710b] gi|134280471|ref|ZP_01767182.1| signal recognition particle protein [Burkholderia pseudomallei 305] gi|167740273|ref|ZP_02413047.1| signal recognition particle protein [Burkholderia pseudomallei 14] gi|167817493|ref|ZP_02449173.1| signal recognition particle protein [Burkholderia pseudomallei 91] gi|167825895|ref|ZP_02457366.1| signal recognition particle protein [Burkholderia pseudomallei 9] gi|167895968|ref|ZP_02483370.1| signal recognition particle protein [Burkholderia pseudomallei 7894] gi|167912613|ref|ZP_02499704.1| signal recognition particle protein [Burkholderia pseudomallei 112] gi|167920560|ref|ZP_02507651.1| signal recognition particle protein [Burkholderia pseudomallei BCC215] gi|217421079|ref|ZP_03452584.1| signal recognition particle protein [Burkholderia pseudomallei 576] gi|226196827|ref|ZP_03792406.1| signal recognition particle protein [Burkholderia pseudomallei Pakistan 9] gi|254180580|ref|ZP_04887178.1| signal recognition particle protein [Burkholderia pseudomallei 1655] gi|254190983|ref|ZP_04897489.1| signal recognition particle protein [Burkholderia pseudomallei Pasteur 52237] gi|254199068|ref|ZP_04905483.1| signal recognition particle protein [Burkholderia pseudomallei S13] gi|254260222|ref|ZP_04951276.1| signal recognition particle protein [Burkholderia pseudomallei 1710a] gi|254299333|ref|ZP_04966783.1| signal recognition particle protein [Burkholderia pseudomallei 406e] gi|76581044|gb|ABA50519.1| signal recognition particle protein [Burkholderia pseudomallei 1710b] gi|134248478|gb|EBA48561.1| signal recognition particle protein [Burkholderia pseudomallei 305] gi|157809273|gb|EDO86443.1| signal recognition particle protein [Burkholderia pseudomallei 406e] gi|157938657|gb|EDO94327.1| signal recognition particle protein [Burkholderia pseudomallei Pasteur 52237] gi|169656898|gb|EDS88295.1| signal recognition particle protein [Burkholderia pseudomallei S13] gi|184211119|gb|EDU08162.1| signal recognition particle protein [Burkholderia pseudomallei 1655] gi|217396491|gb|EEC36508.1| signal recognition particle protein [Burkholderia pseudomallei 576] gi|225931087|gb|EEH27095.1| signal recognition particle protein [Burkholderia pseudomallei Pakistan 9] gi|254218911|gb|EET08295.1| signal recognition particle protein [Burkholderia pseudomallei 1710a] Length = 455 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 109/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +IL+ G+ G GKTT +GKL+K + + KV+ + D +R AAI QLK +++ ADF Sbjct: 104 PAIILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S +A A A+ DVL++DTAGRL + +M I + LK Sbjct: 164 FPSTPDQKPVDIANAAVDWAKRHYHDVLLVDTAGRLGIDEAMMQEIAALHTALK------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG +RGG + + P+ F+ Sbjct: 218 PVETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F + I G D Sbjct: 278 GVAEKLDGLEIFHPDRMANRILGMGD 303 >gi|88658536|ref|YP_507291.1| signal recognition particle protein [Ehrlichia chaffeensis str. Arkansas] gi|88599993|gb|ABD45462.1| signal recognition particle protein [Ehrlichia chaffeensis str. Arkansas] Length = 448 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 83/272 (30%), Positives = 147/272 (54%), Gaps = 14/272 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDV-SVQRVLYDVS 89 +ISS D EE++ L+ +D+ +AV + + E+++ K V Q ++ + Sbjct: 21 VISSEDFD-AAMEEVKVALLEADVSLAVVKDFISNVKEKIVGGTTVKGVLPTQMIIKKIQ 79 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 + + ++L S+ D S VI++VG+ GVGKTT KL+ K+ + +V++A+ D Sbjct: 80 DCLIEVLG--SEKCELDISKPLSVIMMVGLQGVGKTTTTAKLALKLKNKKKEVVMASLDV 137 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AA QL+I + + + A AQ DVLI+DTAGRLH + Sbjct: 138 YRPAAQKQLEILGKQIDVQTLPIIENQAPIDIVKRAMDNAQQANCDVLILDTAGRLHVDQ 197 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 ++M + +R +K D +P V+ V+D+ GQ+A+ + F+ G TG+I+T++DG Sbjct: 198 VMM----EELRAIK--DLTSPSEVILVVDSMIGQDAINVAKSFNDNIGITGIILTRIDGD 251 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +RGG + + ++ P+ F+ GE ++DL+ F Sbjct: 252 SRGGAALSMKMSVGSPIKFIANGEKLSDLDDF 283 >gi|288922435|ref|ZP_06416623.1| signal recognition particle protein [Frankia sp. EUN1f] gi|288346238|gb|EFC80579.1| signal recognition particle protein [Frankia sp. EUN1f] Length = 526 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 88/307 (28%), Positives = 147/307 (47%), Gaps = 19/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + T + RL D E+ L+ +D+ + V + V + + Sbjct: 2 FDTLSSRLDKVFTSLRGRGRLTDADIDATAREIRVALLEADVALPVVRGFVAAVKERARG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L + + + P VIL+ G+ G GKTT+ GKL Sbjct: 62 AEVSASLNPAQQVIKIVNEELVAILGGGTTTVRFAKTP-PTVILLAGLQGTGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188 + + G +L A D R A++QL++ R + E G+ D +A +A Sbjct: 121 GRWLKAQGHTPLLVAADLQRPNAVNQLQVVGGRAGVEVFAPEPGNGVGDPVRVARDALAH 180 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ DV+++DTAGRL + +M IR D +P +L VLDA GQ+A+ Sbjct: 181 ARRHVFDVVVVDTAGRLGVDEEMMRQAAD-IR-----DAVSPDEILFVLDAMIGQDAVST 234 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F G +G+++TK+DG ARGG + + P+ F GE + D + F + ++ Sbjct: 235 AQAFADGVGFSGVVLTKLDGDARGGAALSVARVTGAPIMFASTGESLEDFDVFHPERMAS 294 Query: 309 VITGCLD 315 I G D Sbjct: 295 RILGMGD 301 >gi|212275688|ref|NP_001130574.1| signal recognition particle receptor homolog1 [Zea mays] gi|194689526|gb|ACF78847.1| unknown [Zea mays] gi|194707804|gb|ACF87986.1| unknown [Zea mays] Length = 625 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 28/278 (10%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFN--- 104 L+D L+ ++ +A+K+ E + K + S R+ V + L+ + P Sbjct: 346 LKDRLMAKNVAEEIAEKLCESVAASLEGKKLGSFTRISSTVQTAMEDALLRILTPRRSID 405 Query: 105 -------WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 RP+VI+ VGVNGVGK+T + K++ + L V LAA DTFRS A++Q Sbjct: 406 ILRDVHAAKERGRPYVIVFVGVNGVGKSTNLAKVAYWLLQHNLSVTLAACDTFRSGAVEQ 465 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ A R D A +A EA ++A K DV+++DTAGR+ +N LM + K Sbjct: 466 LRTHARRLQIPIFEKGYEKDPAVVAREAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSK 525 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-------AVAGT---TGLIMTKMD 267 +I + ++P VL V +A G +A+ Q+ F+ AV G+++TK D Sbjct: 526 LINL------NSPDLVLFVGEALVGNDAVDQLTKFNQKLADLSAVPTARLIDGILLTKFD 579 Query: 268 G-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 + G + +V PV F+G G+ DL+ K Sbjct: 580 TIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVK 617 >gi|188588867|ref|YP_001920590.1| signal recognition particle protein [Clostridium botulinum E3 str. Alaska E43] gi|251780688|ref|ZP_04823608.1| signal recognition particle protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499148|gb|ACD52284.1| signal recognition particle protein [Clostridium botulinum E3 str. Alaska E43] gi|243085003|gb|EES50893.1| signal recognition particle protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 452 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/268 (29%), Positives = 131/268 (48%), Gaps = 12/268 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + + + +K +V Q+V+ V+E + ++ N+ Sbjct: 39 LLEADVNYKVVKGFISTVSSKCVGNEVLESLTPGQQVIKIVNEELTNLMGGSESKINYS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S VI++VG+ G GKTT+ GKL+ ++ K +L A D +R AAI QL+I + Sbjct: 98 SSGTTVIMLVGLQGAGKTTMCGKLALELRKNNKKPLLVACDVYRPAAIKQLEIVGKQIEI 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + +A + +++IIDTAGRLH + LM + + + Sbjct: 158 PVFSMGDKVNPVDIAKAGIAHGKDNGNNIIIIDTAGRLHIDEALMQELQDIKENVN---- 213 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ TGQ+A+ E F+ TG+I+TK+DG RGG + I + P+ Sbjct: 214 --PSEILLVVDSMTGQDAVNVAESFNNDLDVTGVILTKLDGDTRGGAALSIRNITEKPIK 271 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 ++G GE ++D E F S+ I G D Sbjct: 272 YIGTGEKLSDFEVFHPDRMSSRILGMGD 299 >gi|241895650|ref|ZP_04782946.1| signal recognition particle protein Ffh [Weissella paramesenteroides ATCC 33313] gi|241871228|gb|EER74979.1| signal recognition particle protein Ffh [Weissella paramesenteroides ATCC 33313] Length = 485 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 89/306 (29%), Positives = 148/306 (48%), Gaps = 29/306 (9%) Query: 30 EGITDIISS-----RR----LDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAK 77 EG+TD + RR D +RE + ++ L+ +D+ V + V + K Sbjct: 4 EGLTDRLQKALSGLRRKGKVTDADIRETMREIRLALLEADVNFKVVKDFVRNVREKASGA 63 Query: 78 DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 V Q+++ V++ + M+ + N P VI++VG+ G GKTT GKL+ Sbjct: 64 KVLEGLNPAQQIVSIVNDELTAMMGESAVALNKS-PKIPTVIMMVGLQGAGKTTTAGKLA 122 Query: 133 KKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQA 189 K+ ++ + ++ A D +R AAI+QLK ++ D ++G+D + ++A Sbjct: 123 LKLKNEQNARPLMIAADVYRPAAIEQLKTLGEQI--DVPVFDMGTDVNPREIVKAGMEKA 180 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 K D + ID AGRL + LM + + D P ++ V+DA TGQNA+ Sbjct: 181 AELKSDYVFIDAAGRLQIDEELMQELADV------KDIAHPDEIMLVVDAMTGQNAVETA 234 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F+ TG+++TK+DG RGG + I P+ F+G GE + DL+ F ++ Sbjct: 235 EGFNDRLDITGVVLTKLDGDTRGGAALSIRAVTGKPIKFVGQGEKMTDLDIFYPDRMASR 294 Query: 310 ITGCLD 315 I G D Sbjct: 295 ILGMGD 300 >gi|53720604|ref|YP_109590.1| signal recognition particle protein [Burkholderia pseudomallei K96243] gi|53726090|ref|YP_104060.1| signal recognition particle protein [Burkholderia mallei ATCC 23344] gi|67643598|ref|ZP_00442343.1| signal recognition particle protein [Burkholderia mallei GB8 horse 4] gi|121599191|ref|YP_991786.1| signal recognition particle protein [Burkholderia mallei SAVP1] gi|124385462|ref|YP_001027279.1| signal recognition particle protein [Burkholderia mallei NCTC 10229] gi|126441162|ref|YP_001060490.1| signal recognition particle protein [Burkholderia pseudomallei 668] gi|126448256|ref|YP_001082784.1| signal recognition particle protein [Burkholderia mallei NCTC 10247] gi|126451954|ref|YP_001067754.1| signal recognition particle protein [Burkholderia pseudomallei 1106a] gi|166998599|ref|ZP_02264457.1| signal recognition particle protein [Burkholderia mallei PRL-20] gi|167721305|ref|ZP_02404541.1| signal recognition particle protein [Burkholderia pseudomallei DM98] gi|167847381|ref|ZP_02472889.1| signal recognition particle protein [Burkholderia pseudomallei B7210] gi|167904353|ref|ZP_02491558.1| signal recognition particle protein [Burkholderia pseudomallei NCTC 13177] gi|242317275|ref|ZP_04816291.1| signal recognition particle protein [Burkholderia pseudomallei 1106b] gi|254178959|ref|ZP_04885613.1| signal recognition particle protein [Burkholderia mallei ATCC 10399] gi|254202780|ref|ZP_04909143.1| signal recognition particle protein [Burkholderia mallei FMH] gi|254208122|ref|ZP_04914472.1| signal recognition particle protein [Burkholderia mallei JHU] gi|52211018|emb|CAH37006.1| signal recognition particle protein [Burkholderia pseudomallei K96243] gi|52429513|gb|AAU50106.1| signal recognition particle protein [Burkholderia mallei ATCC 23344] gi|121228001|gb|ABM50519.1| signal recognition particle protein [Burkholderia mallei SAVP1] gi|124293482|gb|ABN02751.1| signal recognition particle protein [Burkholderia mallei NCTC 10229] gi|126220655|gb|ABN84161.1| signal recognition particle protein [Burkholderia pseudomallei 668] gi|126225596|gb|ABN89136.1| signal recognition particle protein [Burkholderia pseudomallei 1106a] gi|126241126|gb|ABO04219.1| signal recognition particle protein [Burkholderia mallei NCTC 10247] gi|147747027|gb|EDK54104.1| signal recognition particle protein [Burkholderia mallei FMH] gi|147752016|gb|EDK59083.1| signal recognition particle protein [Burkholderia mallei JHU] gi|160694873|gb|EDP84881.1| signal recognition particle protein [Burkholderia mallei ATCC 10399] gi|238524971|gb|EEP88401.1| signal recognition particle protein [Burkholderia mallei GB8 horse 4] gi|242140514|gb|EES26916.1| signal recognition particle protein [Burkholderia pseudomallei 1106b] gi|243065282|gb|EES47468.1| signal recognition particle protein [Burkholderia mallei PRL-20] Length = 455 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 109/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +IL+ G+ G GKTT +GKL+K + + KV+ + D +R AAI QLK +++ ADF Sbjct: 104 PAIILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S +A A A+ DVL++DTAGRL + +M I + LK Sbjct: 164 FPSTPDQKPVDIANAAVDWAKRHYHDVLLVDTAGRLGIDEAMMQEIAALHAALK------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG +RGG + + P+ F+ Sbjct: 218 PVETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F + I G D Sbjct: 278 GVAEKLDGLEIFHPDRMANRILGMGD 303 >gi|212693973|ref|ZP_03302101.1| hypothetical protein BACDOR_03497 [Bacteroides dorei DSM 17855] gi|237710361|ref|ZP_04540842.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237723897|ref|ZP_04554378.1| conserved hypothetical protein [Bacteroides sp. D4] gi|212663505|gb|EEB24079.1| hypothetical protein BACDOR_03497 [Bacteroides dorei DSM 17855] gi|229437723|gb|EEO47800.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229455823|gb|EEO61544.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 440 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 67/194 (34%), Positives = 109/194 (56%), Gaps = 9/194 (4%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 RP VIL+ G+ G GKTT GKL++ + + K +L A D +R AAI+QL++ ++ Sbjct: 98 RPAVILMSGLQGSGKTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIEQLRVLGEQIEVP 157 Query: 169 FVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V SE+ S + +A A +A+AK D++I+DTAGRL + +M I + + + Sbjct: 158 -VYSELDSKNPVQIALNAIHEAKAKGYDLVIVDTAGRLAIDEQMMNEIEAIKKAIN---- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P L V+D+ TGQ+A+ F+ G+++TK+DG RGG + I P+ Sbjct: 213 --PDETLFVVDSMTGQDAVNTAREFNERLDFNGVVLTKLDGDTRGGAALSIRTVVNKPIK 270 Query: 288 FLGVGEGINDLEPF 301 F+G GE ++ ++ F Sbjct: 271 FVGTGEKLDAIDQF 284 >gi|314923933|gb|EFS87764.1| signal recognition particle protein [Propionibacterium acnes HL001PA1] Length = 528 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 81/285 (28%), Positives = 144/285 (50%), Gaps = 20/285 (7%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D ++ L+ +D+ ++V ++ V + + + +++S Q+++ V+E + ++L Sbjct: 28 DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87 Query: 98 PLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 ++ F+ P ++++ G+ G GKTT+ GKL++ + G +LAA D R A+ Sbjct: 88 GQTRTVR--FAKTPSTIVMLAGLQGAGKTTLAGKLAQWFKEEGHSPLLAACDLQRPNAVT 145 Query: 157 QLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 QL++ +R E G+ D +A +A +A+ K DV+IIDTAGRL ++ +MA Sbjct: 146 QLQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAEAEHKLYDVVIIDTAGRLGVDAEMMA 205 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + P L V+DA GQ+A+ F G G+++TK+DG ARGG Sbjct: 206 QAADIKTATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFDGVVLTKLDGDARGG 259 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + I P+ F GEG+ D + F ++ I LD G+ Sbjct: 260 AALSIARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301 >gi|294055143|ref|YP_003548801.1| signal recognition particle protein [Coraliomargarita akajimensis DSM 45221] gi|293614476|gb|ADE54631.1| signal recognition particle protein [Coraliomargarita akajimensis DSM 45221] Length = 453 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 80/276 (28%), Positives = 138/276 (50%), Gaps = 17/276 (6%) Query: 47 EELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSK 101 +E+ L+ +D+ VA++ V E+ + + K V+ Q+V+ ++IH L+ L Sbjct: 32 KEVRKALLSADVHFKVAREFVSNVKEQCVGQEVLKSVTPGQQVI----KIIHDELVKLLG 87 Query: 102 PFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLK 159 + +P I++VG++G GKTT GKL+ ++ + L A D +R AAIDQL+ Sbjct: 88 EGTTELEDKKPLRIMMVGLHGSGKTTSSGKLANYLAKKRDYRPALIACDVYRPAAIDQLE 147 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 + +F + + + A+A +++I DTAGRL + L+ I + Sbjct: 148 TLSQTVGCEFYGDREEKNVVTIGKRGLEAAKAADANLIIFDTAGRLQIDEDLIEEIKDLK 207 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 ++ P VL V DA GQ A+ + FH TG+I+TK+DG ARGG + + Sbjct: 208 AAVQ------PDEVLLVADAALGQEAVNVAKHFHEAVDVTGIILTKLDGDARGGAALSMK 261 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G+GE +++ + F ++ I G D Sbjct: 262 TITDTPIKFMGIGEKVDEFDVFHPDRMASRILGMGD 297 >gi|290476252|ref|YP_003469152.1| 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA [Xenorhabdus bovienii SS-2004] gi|289175585|emb|CBJ82388.1| 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA [Xenorhabdus bovienii SS-2004] Length = 453 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 90/308 (29%), Positives = 149/308 (48%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D +++ L ++ L+ +D+ + V + + + Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFISRIKENAVG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT-VIGK 130 +V+ Q + V + K + ++ N + P V+L+ G+ G GKTT V Sbjct: 62 HEVNKSLTPGQEFVKIVQNELVKAMGEVNSELNLS-AQPPAVVLMAGLQGAGKTTSVAKL 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 KV++ + D +R AAI QL+ ++ DF S+ +A +A + A+ Sbjct: 121 GKLLKEKNKKKVLVVSVDVYRPAAIKQLETLSEAVDIDFFPSDPQEKPVDIANKAIQHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247 K DVL++DTAGRLH + +M I + HA P L V+DA TGQ+A Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKAV---------HAAINPVETLFVVDAMTGQDAAN 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG ARGG + I P+ FLGVGE + LEPF + Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIA 291 Query: 308 AVITGCLD 315 + I G D Sbjct: 292 SRILGMGD 299 >gi|240137226|ref|YP_002961695.1| signal recognition particle protein, GTPase [Methylobacterium extorquens AM1] gi|240007192|gb|ACS38418.1| signal recognition particle protein, GTPase [Methylobacterium extorquens AM1] Length = 520 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P IL+VG+ G GKTT K++++++ +V+LA+ DT R AA++QL + A + + Sbjct: 100 PVAILMVGLQGSGKTTTTAKIARRLNQRDKRRVLLASLDTRRPAAMEQLAVLAKQVEVES 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G A +A A + A+ DV+++DTAGR + LM ++ K Sbjct: 160 LPIVAGQSAVQIAKRAMEAARLGGFDVVMLDTAGRTTVDEGLMNEAAEVKAATK------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH VL V DA TGQ+A+ F G TG+++T+MDG +RGG + + P+ + Sbjct: 214 PHEVLLVADALTGQDAVNTARAFDERLGVTGIVLTRMDGDSRGGAALSMRAVTGKPIKLV 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE ++ LE F + + I G D Sbjct: 274 GVGEKVDALEEFHPQRVANRILGMGD 299 >gi|226941400|ref|YP_002796474.1| Ffh [Laribacter hongkongensis HLHK9] gi|226716327|gb|ACO75465.1| Ffh [Laribacter hongkongensis HLHK9] Length = 450 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 87/290 (30%), Positives = 149/290 (51%), Gaps = 22/290 (7%) Query: 38 SRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVS 89 +R +D +++ + ++ L+ +D+ + V + V ++ + ++V Q V+ V Sbjct: 20 ARLTEDNIKDAMREVRMALLEADVALPVVKAFVNQVRERAMGQEVMGSLTPGQAVVGVVH 79 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA-AGD 148 E + K++ + N + P ++L+ G+ G GKTT GKL+K + + K +L + D Sbjct: 80 EELVKLMGEQNDSLNL-AAVPPAIVLMAGLQGAGKTTTTGKLAKLLKEKSKKKVLLVSTD 138 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 +R AAI+QLK+ A + ++ S +G +A A A+ DVLI+DTAGRL + Sbjct: 139 VYRPAAIEQLKLLAGQVEVEWFPSSVGQLPVDIARAAVDHAKRHYFDVLIVDTAGRLAID 198 Query: 209 SILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 +M I + HA P L V+DA GQ+A+ + F+ TG+++TK Sbjct: 199 EAMMNEIKAI---------HAAINPVETLFVVDAMQGQDAVNTAQAFNEALPLTGVVLTK 249 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +DG ARGG + + P+ F+GVGE + LEPF ++ I G D Sbjct: 250 LDGDARGGAALSVRNVTGKPIKFIGVGEKLTGLEPFHPDRMASRILGMGD 299 >gi|213962455|ref|ZP_03390717.1| signal recognition particle protein [Capnocytophaga sputigena Capno] gi|213954781|gb|EEB66101.1| signal recognition particle protein [Capnocytophaga sputigena Capno] Length = 442 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 111/211 (52%), Gaps = 7/211 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAIDQLKIWADR 164 + S P +IL+ G+ G GKTT GKL+ + + K +L A D +R AAIDQL I ++ Sbjct: 94 NLSGNPTIILMSGLQGSGKTTFSGKLANYLKNKKNKKPLLVACDVYRPAAIDQLHIVGEQ 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + S+ +A + + A+ ++V+I+DTAGRL + +M I + + L Sbjct: 154 VGVPVFSDKGNSNPVDIAQKGVQYAKENHLNVVIVDTAGRLAVDEQMMTEISNIHKALN- 212 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P L V+DA TGQ+A+ + F+ V G+I+TK+DG RGG I I Sbjct: 213 -----PQETLFVVDAMTGQDAVNTAKAFNDVLNFDGVILTKLDGDTRGGAAITIKSVVNK 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE ++ ++ F + + I G D Sbjct: 268 PIKFVGTGEKMDAIDVFYPERMADRILGMGD 298 >gi|300172914|ref|YP_003772079.1| signal recognition particle protein [Leuconostoc gasicomitatum LMG 18811] gi|299887292|emb|CBL91260.1| Signal recognition particle protein [Leuconostoc gasicomitatum LMG 18811] Length = 489 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 78/271 (28%), Positives = 130/271 (47%), Gaps = 17/271 (6%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ +K V + K D+ Q+V+ V++ + + + P N Sbjct: 39 LLEADVNYDTVKKFVANVREKASGADILEGLNPAQQVVKIVNDELTTTMGEEAAPLNKS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P +I++ G+ G GKTT + KL+ K+ + + +L A D +R AAIDQL+I Sbjct: 98 PKIPTIIMMAGLQGAGKTTTVAKLAYKLKKEENARPLLIAADVYRPAAIDQLEILG--RD 155 Query: 167 ADFVCSEIGS--DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + ++G+ + + + +A K D + IDTAGRL + +LM + + + Sbjct: 156 LEIPVFQLGTAVNPREIVRQGLAKAAENKNDYVFIDTAGRLQIDDVLMQELKDVAEIAH- 214 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P +L +DA TGQNA + F A TG+++TK+DG RGG + I Sbjct: 215 -----PDEILLTVDAMTGQNAAETAKGFSAALDLTGVVLTKLDGDTRGGAALSIRDVTGK 269 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE DL+ F ++ I G D Sbjct: 270 PIKFVGQGEKPTDLDVFYPDRMASRILGMGD 300 >gi|326422437|gb|EGD71836.1| Putative signal recognition particle protein [Candidatus Parvarchaeum acidiphilum ARMAN-4_'5-way FS'] Length = 437 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 93/296 (31%), Positives = 146/296 (49%), Gaps = 26/296 (8%) Query: 21 FASTSLKLKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEEL---LTKR 74 F S +L+EGI +++S ++ + E L D+ L D+ A +K+++++ + Sbjct: 3 FEGLSNRLREGIKKLLNSTG-NEKIEEVLTDIQTALTEGDVDKATIEKLMKKIRDDIKSN 61 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 K + + + DV I+ L+ + ++ + P IL+VG+ G GKTT KL+ Sbjct: 62 KGKGLVTREKVIDV---IYNNLVEIVGNEETKINIDSVPFKILLVGLFGSGKTTTAAKLA 118 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA--Q 190 G +V+L DTFR AA QL+ + + + G D +A K A Sbjct: 119 NYYKKRGYRVLLLGLDTFRPAAYQQLEQLSKQINVKIAGG--GDDPV----KAIKNAIGS 172 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 K D++I D+AGR IL + K I+++K + P++V V+ A GQNA QV+ Sbjct: 173 FKNFDIVIADSAGR----DILDNALVKEIKLVK--ETLKPNNVTLVIPADLGQNASIQVK 226 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 FH + +I+TK DGTA GGG + V F+G GE IND E F K F Sbjct: 227 GFHELLDINNIILTKTDGTANGGGALTAAYISGAKVTFIGTGEKINDFEEFNPKKF 282 >gi|282854588|ref|ZP_06263923.1| signal recognition particle protein [Propionibacterium acnes J139] gi|282582170|gb|EFB87552.1| signal recognition particle protein [Propionibacterium acnes J139] gi|314981873|gb|EFT25966.1| signal recognition particle protein [Propionibacterium acnes HL110PA3] gi|315090705|gb|EFT62681.1| signal recognition particle protein [Propionibacterium acnes HL110PA4] Length = 528 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 81/285 (28%), Positives = 144/285 (50%), Gaps = 20/285 (7%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D ++ L+ +D+ ++V ++ V + + + +++S Q+++ V+E + ++L Sbjct: 28 DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87 Query: 98 PLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 ++ F+ P ++++ G+ G GKTT+ GKL++ + G +LAA D R A+ Sbjct: 88 GQTRTVR--FAKTPSTIVMLAGLQGAGKTTLAGKLAQWFKEEGHSPLLAACDLQRPNAVT 145 Query: 157 QLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 QL++ +R E G+ D +A +A +A+ K DV+IIDTAGRL ++ +MA Sbjct: 146 QLQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAEAEHKLYDVVIIDTAGRLGVDAEMMA 205 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + P L V+DA GQ+A+ F G G+++TK+DG ARGG Sbjct: 206 QAADIKTATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFDGVVLTKLDGDARGG 259 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + I P+ F GEG+ D + F ++ I LD G+ Sbjct: 260 AALSIARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301 >gi|298207766|ref|YP_003715945.1| signal recognition particle protein [Croceibacter atlanticus HTCC2559] gi|83850404|gb|EAP88272.1| signal recognition particle protein [Croceibacter atlanticus HTCC2559] Length = 442 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 109/211 (51%), Gaps = 7/211 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADR 164 + S P +IL+ G+ G GKTT GKL+ + + K +L A D +R AAI+QL + ++ Sbjct: 94 NLSGNPSIILMSGLQGSGKTTFSGKLANFLKNKKTKKPLLVACDIYRPAAINQLHVVGEQ 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + E D A++ A A+ +V+IIDTAGRL + +M I + + ++ Sbjct: 154 IGVEVFSDEGNQDPVAISKAAIAHAKQNGHNVVIIDTAGRLAVDEAMMTEISNIHKAIQ- 212 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P L V+D+ TGQ+A+ + F+ G+I+TK+DG RGG I I Sbjct: 213 -----PQETLFVVDSMTGQDAVNTAKAFNDTLNFDGVILTKLDGDTRGGAAISIKSVVDK 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE ++ ++ F + I G D Sbjct: 268 PIKFIGTGEKMDAIDVFYPSRMADRILGMGD 298 >gi|161528039|ref|YP_001581865.1| GTP-binding signal recognition particle [Nitrosopumilus maritimus SCM1] gi|160339340|gb|ABX12427.1| GTP-binding signal recognition particle SRP54 G- domain [Nitrosopumilus maritimus SCM1] Length = 442 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 149/302 (49%), Gaps = 27/302 (8%) Query: 28 LKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRY-------- 75 L + I I+ S +D+ + +EL + L++SD+ V + +I + L + Sbjct: 9 LGDAIKKIVKSSGIDEELIKELSKDVQRALLQSDVNVRLVLEITKHLEERALNETPPPGL 68 Query: 76 AKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSK 133 ++ + ++LYD +S L L +DF + + I+++G+ G GKTTV KL+K Sbjct: 69 SRKNHIVKILYDELSNL-------LGNESEFDFKPGKQNKIILLGIQGSGKTTVASKLAK 121 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 ++ G KV + DT+R A+ QLK ++++ + E D+ ++ + + Sbjct: 122 FLTGQGYKVGVVGADTYRPGALVQLKTMCEKSNVEVYGEESNKDSPSIVKNGLNYFKDQS 181 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +DV++IDTAGR L+ +M R+ K DP L V+D T GQ Q E FH Sbjct: 182 LDVILIDTAGRHKEEQDLLE---EMDRINKVADPDL---ALLVIDGTIGQQCFNQAEAFH 235 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 G+I+TK+D +A+GGG + + ++G GE I+DLE F F + G Sbjct: 236 KTIPVGGVIITKLDSSAKGGGALAASAATGAQIMYIGTGERIDDLEKFSPTRFVGRLLGM 295 Query: 314 LD 315 D Sbjct: 296 GD 297 >gi|163814209|ref|ZP_02205601.1| hypothetical protein COPEUT_00363 [Coprococcus eutactus ATCC 27759] gi|158450658|gb|EDP27653.1| hypothetical protein COPEUT_00363 [Coprococcus eutactus ATCC 27759] Length = 448 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 84/304 (27%), Positives = 149/304 (49%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ + S L +D V+E ++++ L+ +D+ V + V+ + + Sbjct: 3 FDSLSDKLQNVFKKLRSKGVLTEDDVKEAMKEVKRALLEADVNFKVVKSFVKSVSDRAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V V+ V E + K++ S+ +I++ G+ G GKTT KL Sbjct: 63 EEVLKGLNPGHMVIKIVKEEMDKLMGSEMTEIKLRPSNEITIIMMCGLQGAGKTTTAAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + + G K +L A D +R AAI QL++ ++ + +A A + A Sbjct: 123 AYQFKNKGKKPLLVACDVYRPAAIKQLQVNGEKVGVPVFAMGDNNKPLDIAKAAIQHAAK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 ++++ +DTAGRLH + +M ++ + LD +++L V D+ TGQ+A+ Sbjct: 183 NNINLVFLDTAGRLHVDEDMM---DELAEIKANLD--IAYTILTV-DSMTGQDAVNVATT 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G G+I+TK+DG RGG + I P+ + G+GE + DLEPF ++ I Sbjct: 237 FNDKIGIDGVILTKLDGDTRGGAALSIKAVTGKPILYSGMGEKLTDLEPFYPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|318056560|ref|ZP_07975283.1| signal recognition particle protein [Streptomyces sp. SA3_actG] gi|318080610|ref|ZP_07987942.1| signal recognition particle protein [Streptomyces sp. SA3_actF] gi|333024175|ref|ZP_08452239.1| putative signal recognition particle protein [Streptomyces sp. Tu6071] gi|332744027|gb|EGJ74468.1| putative signal recognition particle protein [Streptomyces sp. Tu6071] Length = 513 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/267 (29%), Positives = 135/267 (50%), Gaps = 15/267 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + ++++ + ++VS Q+V+ V+E + +L Sbjct: 28 DATAREIRIALLEADVALPVVRAFIKKVKERALGEEVSKALNPAQQVIKIVNEELVGILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + P VI++ G+ G GKTT+ GKL + + G +L A D R A++Q Sbjct: 88 GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGRWLQGQGHSPLLVACDLQRPNAVNQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R + G+ D +A ++ + A+ K+ DV+I+DTAGRL + LM Sbjct: 147 LSVVAERAGVGIYAPQPGNGVGDPVQVAKDSVEYARTKQFDVVIVDTAGRLGIDQELMRQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P +L V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301 + I V F GE + D + F Sbjct: 261 ALSIAHVTGKQVMFASNGEKLEDFDAF 287 >gi|239946690|ref|ZP_04698443.1| signal recognition particle protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239920966|gb|EER20990.1| signal recognition particle protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 449 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 149/290 (51%), Gaps = 16/290 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89 I++ ++D +R+ + L+ SD+ + V + + E+ K ++V SV Q ++ + Sbjct: 21 ILTEAQIDAAMRD-IRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIH 79 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 E + +L + + +P V L+VG+ G GKTT KL+ ++ + KV+L + D Sbjct: 80 EEMINLLASSGNETKLNLNSKPPVNFLMVGLQGSGKTTASSKLALRLKNQNKKVLLVSLD 139 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 T+R AA +QL I A+ + + G + A +A+ DV+I DTAGR + Sbjct: 140 TYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAIAEAKISAYDVVIYDTAGRTQID 199 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 +M + ++++ P L V+D+ TGQ+A+ F+ +GLI++++DG Sbjct: 200 KEMMEEALAIKKIVE------PTETLLVIDSMTGQDAVVTASSFNEKLEISGLILSRIDG 253 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 ++GG + + K P+ FL GE + DLE F A+ ++ I LD G+ Sbjct: 254 DSKGGAALSVKYITKKPIKFLSSGEKLTDLEEFDAERLASRI---LDMGD 300 >gi|238882842|gb|EEQ46480.1| conserved hypothetical protein [Candida albicans WO-1] Length = 535 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 85/289 (29%), Positives = 145/289 (50%), Gaps = 33/289 (11%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA-KDVSVQRVLYDVSELIHKMLMP-LS 100 D V ++ + LI +I +A I++++ TK A K V++ +++ + K+L P +S Sbjct: 245 DEVSKKFREQLITKNITPGIATTIIDKIKTKLSANKKVTMAVYKQALTDELTKILTPNVS 304 Query: 101 KPF------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 N + + RP+VI VVGVNGVGK+T + KL+ L V++ A DTFRS A Sbjct: 305 TDLLHDIKRNAELNTRPYVISVVGVNGVGKSTNLAKLAFWFLQNNLNVLICACDTFRSGA 364 Query: 155 IDQLKIWAD-----RTSADFVCSEI---------GSDAAALAYEAFKQAQAKKVDVLIID 200 ++QLK+ + ++ S I G A +A + A+ K D+++ID Sbjct: 365 VEQLKVHVNNLNRLNEASTNTKSRIGIFEKGYGSGDHVVQTAKQAVQYAEENKFDIVLID 424 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGR H+N+ LMA + K D P+ ++ V +A G +++ Q F+ G Sbjct: 425 TAGRTHSNAKLMAPLKKF------GDAANPNKIIMVGEALVGTDSVEQATNFNKAFGNKR 478 Query: 261 ----LIMTKMDGTAR-GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 I++K+D G +I +V+ +P+ F+G G+ D++ K Sbjct: 479 TLDFFIISKVDTVGDLVGTMINMVIATNVPILFVGTGQTYTDIKRLSVK 527 >gi|254458732|ref|ZP_05072156.1| signal recognition particle protein [Campylobacterales bacterium GD 1] gi|207084498|gb|EDZ61786.1| signal recognition particle protein [Campylobacterales bacterium GD 1] Length = 448 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 74/257 (28%), Positives = 135/257 (52%), Gaps = 8/257 (3%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNW 105 +EL+ L+++D+ V ++++ E+ + + + L + ++K+L + +K F + Sbjct: 30 DELKKSLLKADVNHKVVKELIAEVQIETKKNGIGKDQFLDALRAALYKLLEIGGNKGFTF 89 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + P VIL+ G+ G GKTT GKL+ + + KV++ A D R AA++QL+ + Sbjct: 90 -VPNPPTVILMTGLQGSGKTTTTGKLANYLKNKQKKVLIVAADLQRLAAVEQLRQITTQI 148 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + +E + + A K+A DV++IDTAGRL + LM + +K+ Sbjct: 149 GVELYENEATKNPVEVVAAALKKANDGIYDVVLIDTAGRLAIDDELM----NELEAVKK- 203 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P + V D+ TGQ+A++ F G G+I++K DG ++GG + + +P Sbjct: 204 -AANPSEIFYVADSMTGQDAVKTATSFKEKIGIDGVILSKYDGDSKGGVALGLASQVLVP 262 Query: 286 VYFLGVGEGINDLEPFV 302 + F+G GE + DLE F+ Sbjct: 263 LRFIGSGEKMEDLEVFL 279 >gi|13507800|ref|NP_109749.1| signal recognition particle protein [Mycoplasma pneumoniae M129] gi|2500882|sp|P75054|SRP54_MYCPN RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog gi|1673748|gb|AAB95741.1| signal recognition particle protein [Mycoplasma pneumoniae M129] Length = 450 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 85/280 (30%), Positives = 136/280 (48%), Gaps = 20/280 (7%) Query: 44 GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSELIHKMLMPL 99 V +E+ L+ +D+ + V + ++ + + + V +Q+ L V + +++ L Sbjct: 30 AVLKEIRIALLDADVNLLVVKNFIKAIREQTVGQTVEPGQDLQKWLLKV--IKQELINIL 87 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS---KKMSDAGLKVMLAAGDTFRSAAID 156 S+P S RP ++VVG+ G GKTT GKL+ KK K ML A D +R AAID Sbjct: 88 SQPNQEITSKRPLKVMVVGLQGSGKTTTCGKLAVWLKKQFQQ--KAMLVALDIYRPAAID 145 Query: 157 QLKIWADRTSADFVCSEIGSDAA-ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 QL A++T + F G+ A EA K + +I DTAGRL N LM Sbjct: 146 QLATLAEQTESVFFAK--GTQAPDQTTKEAVKTFKESGCQAIICDTAGRLQTNQELM--- 200 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 +++ + L P +L V+D +GQ + + FH TG I+TK+D AR G Sbjct: 201 DELVAIKNELHPD---EILMVVDGLSGQEIINVAKEFHNRLKLTGFIITKLDSDARAGAA 257 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + ++P+ +G E + LE F + ++ I G D Sbjct: 258 LSLTSLLEVPIKLMGTSEKLTGLEQFHPERIASRILGLGD 297 >gi|289450230|ref|YP_003475458.1| signal recognition particle protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184777|gb|ADC91202.1| signal recognition particle protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 452 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 89/305 (29%), Positives = 143/305 (46%), Gaps = 18/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 FAS S KL+ I R+ + + E+ L+ +D+ V + ++ E+ A Sbjct: 4 FASLSDKLQAITAKIGRQSRITEADLKTMMREIRLALLEADVNYQVVKNLIAEI--SEAA 61 Query: 77 KDVSVQRVL---YDVSELIHKMLMPLSKPFNWDFSHRPH---VILVVGVNGVGKTTVIGK 130 K +V + L + +++H+ L+ L P VI++ G+ G GKTT K Sbjct: 62 KGEAVMQSLTPGQQIVKIVHESLIELLSVGETKLKVNPSGFTVIMLYGLQGSGKTTTAAK 121 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L K + G K ++ + DT R AA +QL I D+ + AA +A EA ++A+ Sbjct: 122 LGKILKSRGKKPLVTSVDTHRPAAAEQLNILCDKIQVPCYINPPEKHAAKIAREAVERAK 181 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 D LI+DTAGR+ + LM + ++ +K P L ++D+ GQ A+ Sbjct: 182 YLLCDTLIVDTAGRMTIDEELMQELKELENTVK------PDERLLIVDSMIGQEAVNIAL 235 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G G IMTK+DG ARGG + I + P+ F+ GE + +E F ++ I Sbjct: 236 EFERQIGLDGFIMTKLDGDARGGAALSISKMTEKPIKFICTGEKTDAIEEFHPDRLASRI 295 Query: 311 TGCLD 315 G D Sbjct: 296 LGMGD 300 >gi|282889840|ref|ZP_06298379.1| hypothetical protein pah_c004o251 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500414|gb|EFB42694.1| hypothetical protein pah_c004o251 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 442 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/212 (34%), Positives = 109/212 (51%), Gaps = 8/212 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 + + P VI++ G+ G GKTT KL+K K + +L A D R AAI+QL+ Sbjct: 94 NLTGNPAVIMLCGLQGCGKTTHSAKLAKYLKRKNNCKNPLLVACDLQRPAAINQLQTLGA 153 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + D +A +A QA+ + DVLI+DTAGRLH + LM +++ K Sbjct: 154 QIGVPVFTIPGEKDPVKVAQQALAQAKKENHDVLIVDTAGRLHVDEELM------LQLEK 207 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 D P +L V +A TGQ+A++ F+A TG I+T +DG+ RGG I I Sbjct: 208 VRDALQPGEILFVANAATGQDAVKVAAEFNARVAVTGTILTMLDGSTRGGAAISIKEVTG 267 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F G+GE ++D++ F + I G D Sbjct: 268 KPLKFEGIGEKLDDIQVFNPMSMADRILGMGD 299 >gi|229821026|ref|YP_002882552.1| signal recognition particle protein [Beutenbergia cavernae DSM 12333] gi|229566939|gb|ACQ80790.1| signal recognition particle protein [Beutenbergia cavernae DSM 12333] Length = 528 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 90/311 (28%), Positives = 149/311 (47%), Gaps = 24/311 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 FA+ S +L + + RL + E E+ L+ +D+ + V + + + + Sbjct: 2 FATLSDRLSAAFSSLRGKGRLSEADIEATVTEIRRALLDADVALPVVRSFTATVRERASS 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGK 130 +VS Q+++ V+E + ++L ++ F+ RP VIL+ G+ G GKTT+ GK Sbjct: 62 AEVSRALNPSQQIVKIVNEELTQILGGSARELR--FAKRPPTVILLAGLQGAGKTTLAGK 119 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187 L + G +L A D R A+ QL+I + E G+ D A+A Sbjct: 120 LGHWLRSEGHTPLLVAADLQRPNAVQQLQIVGENAGVPVWAPEPGNGTGDPVAVARTGVA 179 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ + DV+++DTAGRL ++ +M IR D +P +L V+DA GQ+A+ Sbjct: 180 HAKDRYYDVVVVDTAGRLGVDAEMMRQAAD-IR-----DAVSPDEILFVVDAMIGQDAVT 233 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 F G TG++++K+DG ARGG + + PV F GE + D E F + Sbjct: 234 TANAFAEGVGFTGVVLSKLDGDARGGAALSVAQVTGAPVLFASTGEKVTDFERFHPDRMA 293 Query: 308 AVITGCLDYGE 318 + I LD G+ Sbjct: 294 SRI---LDMGD 301 >gi|325963720|ref|YP_004241626.1| signal recognition particle subunit FFH/SRP54 (srp54) [Arthrobacter phenanthrenivorans Sphe3] gi|323469807|gb|ADX73492.1| signal recognition particle subunit FFH/SRP54 (srp54) [Arthrobacter phenanthrenivorans Sphe3] Length = 527 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 89/317 (28%), Positives = 150/317 (47%), Gaps = 29/317 (9%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L ++ RL D E+ L+ +D+ V V ++ + + Sbjct: 2 FNSLSDRLTATFKNLRGKGRLTEADVDATVREIRRALLDADVAVPVVREFTGRVRERALG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+++ V+E + ++L ++ + P +I++ G+ G GKTT+ GKL Sbjct: 62 AEVSGALNPSQQIVKIVNEELVEILGGETRRIRL-AKNGPTIIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS----------DAAAL 181 SK + G ML A D R A+ QL++ R G+ D A+ Sbjct: 121 SKWLKAQGHSPMLVACDLQRPNAVTQLQVVGQRAKVPVFAPHPGATSTELDQPAGDPVAV 180 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 A ++A+ K DV+I+DTAGRL ++ +M ++ R + P+ VL V+D+ Sbjct: 181 ARAGVEEARQKLHDVVIVDTAGRLGVDADMMEQARQIRRAI------VPNEVLFVIDSMI 234 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQ+A+ F TG++++K+DG ARGG + + PV F GEG++D E F Sbjct: 235 GQDAVNTALAFDEGVNFTGIVLSKLDGDARGGAALSVASVTGKPVMFASTGEGLDDFELF 294 Query: 302 VAKDFSAVITGCLDYGE 318 ++ I LD G+ Sbjct: 295 HPDRMASRI---LDMGD 308 >gi|314966101|gb|EFT10200.1| signal recognition particle protein [Propionibacterium acnes HL082PA2] gi|315094952|gb|EFT66928.1| signal recognition particle protein [Propionibacterium acnes HL060PA1] Length = 528 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 81/285 (28%), Positives = 144/285 (50%), Gaps = 20/285 (7%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D ++ L+ +D+ ++V ++ V + + + +++S Q+++ V+E + ++L Sbjct: 28 DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87 Query: 98 PLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 ++ F+ P ++++ G+ G GKTT+ GKL++ + G +LAA D R A+ Sbjct: 88 GQTRTVR--FAKTPSTIVMLAGLQGAGKTTLAGKLAQWFKEEGHSPLLAACDLQRPNAVT 145 Query: 157 QLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 QL++ +R E G+ D +A +A +A+ K DV+IIDTAGRL ++ +MA Sbjct: 146 QLQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAEAEHKLYDVVIIDTAGRLGVDAEMMA 205 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + P L V+DA GQ+A+ F G G+++TK+DG ARGG Sbjct: 206 QAADIKTATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFDGVVLTKLDGDARGG 259 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + I P+ F GEG+ D + F ++ I LD G+ Sbjct: 260 AALSIARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301 >gi|302522152|ref|ZP_07274494.1| signal recognition particle protein [Streptomyces sp. SPB78] gi|302431047|gb|EFL02863.1| signal recognition particle protein [Streptomyces sp. SPB78] Length = 561 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 81/284 (28%), Positives = 141/284 (49%), Gaps = 18/284 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + ++++ + ++VS Q+V+ V+E + +L Sbjct: 76 DATAREIRIALLEADVALPVVRAFIKKVKERALGEEVSKALNPAQQVIKIVNEELVGILG 135 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + P VI++ G+ G GKTT+ GKL + + G +L A D R A++Q Sbjct: 136 GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGRWLQGQGHSPLLVACDLQRPNAVNQ 194 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R + G+ D +A ++ + A+ K+ DV+I+DTAGRL + LM Sbjct: 195 LSVVAERAGVGIYAPQPGNGVGDPVQVAKDSVEYARTKQFDVVIVDTAGRLGIDQELMRQ 254 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + D +P +L V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 255 AADI------RDAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 308 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + I V F GE + D + F ++ I LD G+ Sbjct: 309 ALSIAHVTGKQVMFASNGEKLEDFDAFHPDRMASRI---LDMGD 349 >gi|237813885|ref|YP_002898336.1| signal recognition particle protein [Burkholderia pseudomallei MSHR346] gi|237502771|gb|ACQ95089.1| signal recognition particle protein [Burkholderia pseudomallei MSHR346] Length = 455 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 109/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +IL+ G+ G GKTT +GKL+K + + KV+ + D +R AAI QLK +++ ADF Sbjct: 104 PAIILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVSEQIGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S +A A A+ DVL++DTAGRL + +M I + LK Sbjct: 164 FPSTPDQKPVDIANAAVDWAKRHYHDVLLVDTAGRLGIDEAMMQEIAALHTALK------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG +RGG + + P+ F+ Sbjct: 218 PVETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F + I G D Sbjct: 278 GVAEKLDGLEIFHPDRMANRILGMGD 303 >gi|123974885|ref|XP_001314049.1| SRP54-type protein [Trichomonas vaginalis G3] gi|121896072|gb|EAY01234.1| SRP54-type protein, putative [Trichomonas vaginalis G3] Length = 482 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 99/206 (48%), Gaps = 6/206 (2%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P+V + VG+ G GKTT KL G KV L DTFR+ A +QL A + Sbjct: 99 KPNVYMFVGLQGSGKTTTCTKLGLYYKKRGFKVGLVGADTFRAGAREQLMQNAQSVGLPY 158 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + D ++A ++ + ++ D++I+DT+G+ + L + +M D Sbjct: 159 YVDLVNIDPISVAISGVEKFKRERYDMIIVDTSGKHAQENALFQEMQEM------QDAIN 212 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P ++ VLDA GQ+A Q F +IMTK+D +GGG I V K P+ F Sbjct: 213 PDEIIFVLDANIGQSAFDQATAFSKAVDIGSIIMTKLDSGTKGGGAISAVAATKCPIAFY 272 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE ++ LE F F A I G D Sbjct: 273 GTGEEMDQLEIFDPNSFIANILGYAD 298 >gi|323135868|ref|ZP_08070951.1| signal recognition particle protein [Methylocystis sp. ATCC 49242] gi|322398959|gb|EFY01478.1| signal recognition particle protein [Methylocystis sp. ATCC 49242] Length = 512 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 80/275 (29%), Positives = 141/275 (51%), Gaps = 15/275 (5%) Query: 48 ELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ + V A K+ + + K VS Q V+ V++++ + L ++P Sbjct: 33 EIRRALLEADVALDVVRSFADKVRDRAVGAGVIKSVSPGQMVVKIVNDVLIETLGETAEP 92 Query: 103 FNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKI 160 D + +P + I++VG+ G GKTT K++K++ + G + ++A+ D R AA +QL + Sbjct: 93 I--DLAAKPPIAIMMVGLQGAGKTTTTAKIAKRLKERHGKRSLMASLDVKRPAAQEQLAV 150 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 + D + G +A A + A+ + DV+++DTAGR H + LM + + Sbjct: 151 LGRQVEVDTLPIVPGQTPLQIARRAMEAARLEGYDVVLLDTAGRTHIDEPLMQEMADIKS 210 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 PH +L V DA TGQ+A+ + F G TG+++T+MDG RGG + + Sbjct: 211 YAN------PHEILLVADALTGQDAVNLAKNFDERVGLTGIVLTRMDGDGRGGAALSMRY 264 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ +GVGE ++ L+ F + I G D Sbjct: 265 VTGKPIKLIGVGEKMDALDEFAPTRIANRILGMGD 299 >gi|26553705|ref|NP_757639.1| signal recognition particle GTPase [Mycoplasma penetrans HF-2] gi|26453712|dbj|BAC44043.1| signal recognition particle GTPase [Mycoplasma penetrans HF-2] Length = 445 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 68/199 (34%), Positives = 101/199 (50%), Gaps = 12/199 (6%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLS---KKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 DF + I++VG+ G GKTT K++ K D K +L A D +R AAIDQL+ + Sbjct: 95 DFEKKKLKIMMVGLQGSGKTTTAAKIASFAKGKFDK--KPLLVACDIYRPAAIDQLRTLS 152 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 + DF + D + EA A K D+++IDTAGRLH N LM + K+ + Sbjct: 153 EEIKVDFYDKK-QQDPVKTSKEALDIADKNKNDLVVIDTAGRLHTNKELMEELQKIKKAT 211 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 P +L V+DA GQ+ + FH TG+++TK+D AR G + + Sbjct: 212 N------PDEILLVVDAMAGQDITNVAQEFHNNLNLTGIVITKLDSDARAGAALSLRSIL 265 Query: 283 KIPVYFLGVGEGINDLEPF 301 +P+ GVGE + L+ F Sbjct: 266 DVPIKLTGVGEKVGSLDVF 284 >gi|21230651|ref|NP_636568.1| signal recognition particle protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769354|ref|YP_244116.1| signal recognition particle protein [Xanthomonas campestris pv. campestris str. 8004] gi|188992540|ref|YP_001904550.1| signal recognition particle protein [Xanthomonas campestris pv. campestris str. B100] gi|21112236|gb|AAM40492.1| signal recognition particle protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574686|gb|AAY50096.1| signal recognition particle protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734300|emb|CAP52510.1| signal recognition particle protein [Xanthomonas campestris pv. campestris] Length = 458 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 83/275 (30%), Positives = 138/275 (50%), Gaps = 22/275 (8%) Query: 39 RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 R ++ +RE E+ L+ +D+ + V Q ++E + + ++V Q ++ V + Sbjct: 21 RLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKIVRD 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149 + ++ + N + P +IL+ G+ G GKTT +GKL+K M + K VM+ + D Sbjct: 81 ELTAVMGAAAADLNLNVPA-PAIILMAGLQGAGKTTTVGKLAKHMKEKRKKKVMVVSADV 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI+QLK A++ F S+ + A A+ DVL++DTAGRL ++ Sbjct: 140 YRPAAIEQLKTLAEQVGVLFFPSDASQKPVDIVRAAISDARKSFADVLLVDTAGRLAIDA 199 Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 +M I + HA P L V+DA TGQ+A + F TG+++TK Sbjct: 200 AMMDEIKAL---------HAAVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKT 250 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 DG ARGG + + P+ F+G GE + L+ F Sbjct: 251 DGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVF 285 >gi|301633520|gb|ADK87074.1| signal recognition particle protein [Mycoplasma pneumoniae FH] Length = 450 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 85/280 (30%), Positives = 136/280 (48%), Gaps = 20/280 (7%) Query: 44 GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSELIHKMLMPL 99 V +E+ L+ +D+ + V + ++ + + + V +Q+ L V + +++ L Sbjct: 30 AVLKEIRIALLDADVNLLVVKNFIKAIREQTVGQTVEPGQDLQKWLLKV--IKQELINIL 87 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS---KKMSDAGLKVMLAAGDTFRSAAID 156 S+P S RP ++VVG+ G GKTT GKL+ KK K ML A D +R AAID Sbjct: 88 SQPNQEITSKRPLKVMVVGLQGSGKTTTCGKLAVWLKKQFQQ--KAMLVALDIYRPAAID 145 Query: 157 QLKIWADRTSADFVCSEIGSDAA-ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 QL A++T + F G+ A EA K + +I DTAGRL N LM Sbjct: 146 QLATLAEQTESVFFAK--GTQAPDQTTKEAVKTFKESGCQAIICDTAGRLQTNQELM--- 200 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 +++ + L P +L V+D +GQ + + FH TG I+TK+D AR G Sbjct: 201 DELVAIKNELHPD---EILMVVDGLSGQEIINVAKEFHNRLKLTGFIITKLDSDARAGAA 257 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + ++P+ +G E + LE F + ++ I G D Sbjct: 258 LSLTSLLEVPIKLMGTSEKLTGLEQFHPERIASRILGLGD 297 >gi|238063297|ref|ZP_04608006.1| signal recognition particle protein [Micromonospora sp. ATCC 39149] gi|237885108|gb|EEP73936.1| signal recognition particle protein [Micromonospora sp. ATCC 39149] Length = 527 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/281 (27%), Positives = 136/281 (48%), Gaps = 15/281 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + + + + +VS Q+++ V+E + +L Sbjct: 28 DATAREIRLALLEADVALPVVKGFIANVKERARGAEVSQALNPAQQIVKIVNEELINVLG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 + + P VI++ G+ G GKTT+ GKL++ + G + +L A D R A+ Q Sbjct: 88 GEGRRLQF-AKQPPTVIMLAGLQGSGKTTLAGKLARWLKAQGHQPLLVAADLQRPNAVGQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L++ R + E G+ D +A + + A+ D++I+DTAGRL ++ +M Sbjct: 147 LQVLGGRAGVEVYAPEPGNGTGDPVQVARASIEHAKRAARDIVIVDTAGRLGIDAEMMRQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + D P V+ V+DA GQ+A+R E F G TG++++K+DG ARGG Sbjct: 207 AADI------RDAVNPDEVIFVIDAMVGQDAVRTAEAFRDGVGITGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ F GE + D + F ++ I G D Sbjct: 261 ALSVREVTGQPILFASTGEKLEDFDVFHPDRMASRILGMGD 301 >gi|150004753|ref|YP_001299497.1| putative signal recognition protein [Bacteroides vulgatus ATCC 8482] gi|254883142|ref|ZP_05255852.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|294775183|ref|ZP_06740709.1| signal recognition particle protein [Bacteroides vulgatus PC510] gi|319641812|ref|ZP_07996491.1| hypothetical protein HMPREF9011_02089 [Bacteroides sp. 3_1_40A] gi|149933177|gb|ABR39875.1| putative signal recognition protein [Bacteroides vulgatus ATCC 8482] gi|254835935|gb|EET16244.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|294450995|gb|EFG19469.1| signal recognition particle protein [Bacteroides vulgatus PC510] gi|317386568|gb|EFV67468.1| hypothetical protein HMPREF9011_02089 [Bacteroides sp. 3_1_40A] Length = 440 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 67/194 (34%), Positives = 109/194 (56%), Gaps = 9/194 (4%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 RP VIL+ G+ G GKTT GKL++ + + K +L A D +R AAI+QL++ ++ Sbjct: 98 RPAVILMSGLQGSGKTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIEQLRVLGEQIEVP 157 Query: 169 FVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V SE+ S + +A A +A+AK D++I+DTAGRL + +M I + + + Sbjct: 158 -VYSELDSKNPVQIALNAIHEAKAKGYDLVIVDTAGRLAIDEQMMNEIEAIKKAVN---- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P L V+D+ TGQ+A+ F+ G+++TK+DG RGG + I P+ Sbjct: 213 --PDETLFVVDSMTGQDAVNTAREFNERLDFNGVVLTKLDGDTRGGAALSIRTVVNKPIK 270 Query: 288 FLGVGEGINDLEPF 301 F+G GE ++ ++ F Sbjct: 271 FVGTGEKLDAIDQF 284 >gi|308462623|ref|XP_003093593.1| hypothetical protein CRE_02627 [Caenorhabditis remanei] gi|308249610|gb|EFO93562.1| hypothetical protein CRE_02627 [Caenorhabditis remanei] Length = 496 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 89/300 (29%), Positives = 144/300 (48%), Gaps = 29/300 (9%) Query: 29 KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---------VEELL----TKRY 75 K G +I+ LD ++E + LI SD+ + + +++ EE++ +RY Sbjct: 16 KLGQNTVINEEELDLMLKE-VCTALIESDVHIRLVKQLKDNVKKAINFEEIVGGANKRRY 74 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 +Q+ +++ EL+ K++ P F R +V + VG+ G GKTT K++ Sbjct: 75 -----IQKTVFN--ELL-KLVDPGVTAFQPTKGKR-NVFMFVGLQGSGKTTTCTKMAYYY 125 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 G K L DTFR+ A DQLK A + F S D +A E ++ + + Sbjct: 126 QRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYSEIDPVKIAAEGVEKFTKEGFE 185 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 ++I+DT+GR + L +M++V + P +V+ V+DA+ GQ Q F Sbjct: 186 IIIVDTSGRHKQEASLFE---EMLQVSNAV---TPDNVVFVMDASIGQACEAQARAFSQT 239 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+D A+GGG + V K PV F+G GE I+D E F K F + G D Sbjct: 240 VDVASVIITKLDSHAKGGGALSAVAVTKSPVIFIGTGEHIDDFEIFKPKSFVQKLLGMGD 299 >gi|300309714|ref|YP_003773806.1| signal recognition particle subunit SRP54 protein [Herbaspirillum seropedicae SmR1] gi|300072499|gb|ADJ61898.1| signal recognition particle subunit SRP54 protein [Herbaspirillum seropedicae SmR1] Length = 456 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 120/236 (50%), Gaps = 11/236 (4%) Query: 81 VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-G 139 VQR +++ L+ L P + N+ + P +IL+ G+ G GKTT +GKL+K + + Sbjct: 78 VQR---ELASLMGADLGPEASQLNF-ATQPPAIILMAGLQGAGKTTTVGKLAKYLRETTK 133 Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199 KV+ + D +R AAI QL+ + ADF S+ +A A A+ +VLI+ Sbjct: 134 KKVLTVSADVYRPAAIGQLETVTGQAGADFFPSQATDKPVDIALAALDYAKKHHHEVLIV 193 Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 DTAGRL + +M I + +K P L V+DA GQ+A+ + F T Sbjct: 194 DTAGRLGIDQAMMDEIRAVHAAIK------PIETLFVVDAMLGQDAINTAKAFSDALPLT 247 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G+++TK+DG +RGG + + P+ F GV E ++ LE F + I G D Sbjct: 248 GVVLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDPSRMANRILGMGD 303 >gi|325955366|ref|YP_004239026.1| signal recognition particle protein [Weeksella virosa DSM 16922] gi|323437984|gb|ADX68448.1| signal recognition particle protein [Weeksella virosa DSM 16922] Length = 458 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 69/212 (32%), Positives = 109/212 (51%), Gaps = 13/212 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 S P +IL+ G+ G GKTT GKL+ + + K +L AGD +R AAI+QLK+ ++ Sbjct: 96 SANPTIILIAGLQGSGKTTFSGKLANYLKTKKNKKPLLVAGDVYRPAAINQLKVLGEQIG 155 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + E + +A +A A+ +V+I+DTAGRL + +M I ++ Sbjct: 156 VEVYAEEENKNPVEIAEKAIAYAKQNGNNVIILDTAGRLAVDQEMMDEIRRV-------- 207 Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 HA P L V+D+ TGQ+A+ F+ V +G+++TK+DG RGG + I Sbjct: 208 -HAATNPTETLFVVDSMTGQDAVNTARAFNDVLDYSGVVLTKLDGDTRGGAALTIKTVVD 266 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+ GE + L+ F + I G D Sbjct: 267 KPIKFISTGEKMEALDLFYPSRMADRILGMGD 298 >gi|170017639|ref|YP_001728558.1| Signal recognition particle protein [Leuconostoc citreum KM20] gi|169804496|gb|ACA83114.1| Signal recognition particle protein [Leuconostoc citreum KM20] Length = 491 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 81/271 (29%), Positives = 129/271 (47%), Gaps = 17/271 (6%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ +K V + K D+ Q+V+ V++ + + + P N Sbjct: 39 LLEADVNYETVKKFVANVREKASGADILEGLNPAQQVVKIVNDELTATMGEEAVPLNKS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P VI++ G+ G GKTT + KL+ K+ S+ + +L A D +R AAIDQL+I Sbjct: 98 PKIPTVIMMAGLQGAGKTTTVAKLAYKLKSEQHARPLLIAADVYRPAAIDQLEILG--RD 155 Query: 167 ADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 ++G+D + + +A K D + IDTAGRL + LM + + Sbjct: 156 LGIPVFQLGTDINPRDIVRQGLAEAHKNKNDYVFIDTAGRLQIDETLMQELKDIA----- 210 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 D +P +L +DA TGQNA + F A TG+++TK+D RGG + I Sbjct: 211 -DIASPDEILLTVDAMTGQNAAETAKGFSAALDLTGVVLTKLDADTRGGAALSIRDVTGK 269 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE DL+ F ++ I G D Sbjct: 270 PIKFIGQGEKPTDLDVFYPDRMASRILGMGD 300 >gi|291545208|emb|CBL18317.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ruminococcus sp. 18P13] Length = 460 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 115/209 (55%), Gaps = 9/209 (4%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P VI++ G+ G GKTT KL+K + G + +L A D +R AAI+QL + ++ Sbjct: 98 SKPPCVIMMCGLQGSGKTTHAAKLAKYLKREGHRPLLVACDIYRPAAINQLMVVGEKAGV 157 Query: 168 DFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 E+G D ++ +A + A+ DV+I+DTAGRLH + LM + ++ ++ Sbjct: 158 KVF--EMGQIDPVVISTQAMRYAKDYGHDVVILDTAGRLHIDEKLMDELKQIKAKVE--- 212 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P+ ++ V+DA TGQ+A+ + F G ++M+K+D RGG + ++ P+ Sbjct: 213 ---PNEIMLVVDAMTGQDAVNVAKAFDEALGIDSVLMSKLDSDTRGGAALSVLAVTGKPI 269 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE +++ E F + ++ I G D Sbjct: 270 KFVGMGEKLDEFERFHPERMASRILGMGD 298 >gi|315636325|ref|ZP_07891575.1| signal recognition particle protein [Arcobacter butzleri JV22] gi|315479414|gb|EFU70097.1| signal recognition particle protein [Arcobacter butzleri JV22] Length = 455 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 70/195 (35%), Positives = 107/195 (54%), Gaps = 6/195 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P IL+ G+ G GKTT GKL+ + KV++AA D R AA++QLK A + Sbjct: 96 STPPTTILMTGLQGSGKTTTTGKLANYLKIRKKKVLVAACDLQRLAAVEQLKQIAAQIEV 155 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 D + S+ +A +A ++A + DVL+IDTAGRL + LM + K I+ D Sbjct: 156 DIYFDDTESNPVKIALKAKEKAIKEHYDVLLIDTAGRLAIDEELMLQL-KDIK-----DA 209 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ + V D+ TG +A + F G G+I++K DG +GG + I ++P+ Sbjct: 210 INPNEIFYVADSLTGHDATKTAITFKEKIGIDGVILSKYDGDTKGGVALSIANQVEVPLR 269 Query: 288 FLGVGEGINDLEPFV 302 F+G+GE + DLE F+ Sbjct: 270 FIGIGEKMPDLEVFI 284 >gi|226328731|ref|ZP_03804249.1| hypothetical protein PROPEN_02626 [Proteus penneri ATCC 35198] gi|225201917|gb|EEG84271.1| hypothetical protein PROPEN_02626 [Proteus penneri ATCC 35198] Length = 281 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 89/284 (31%), Positives = 143/284 (50%), Gaps = 19/284 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L + +I RL ++ ++E L ++ L+ +D+ + V + + + K A Sbjct: 2 FENLSDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFIARV--KESA 59 Query: 77 KDVSVQRVLYDVSE---LIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGK 130 V + L E ++ L+ N D + P V+L+ G+ G GKTT + K Sbjct: 60 VGHEVNKSLTPGQEFVKIVQNELVNAMGEVNTDLDLSAQPPAVVLMAGLQGAGKTTSVAK 119 Query: 131 LSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L K + + K +L + D +R AAI QL+ A+ DF S + + +A A K A Sbjct: 120 LGKFLKEKKKKKVLVVSADVYRPAAIKQLETLAETVGIDFFPSTVQENPVTIASNALKHA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 Q + DVL++DTAGRLH + +M I + + + P L V+DA TGQ+A Sbjct: 180 QLQFYDVLLVDTAGRLHVDEGMMEEIQLLHKAIN------PVETLFVVDAMTGQDAANTA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 + F+ TG+++TK+DG ARGG + I P+ FLGVGE Sbjct: 234 KAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGE 277 >gi|196230889|ref|ZP_03129750.1| signal recognition particle protein [Chthoniobacter flavus Ellin428] gi|196225230|gb|EDY19739.1| signal recognition particle protein [Chthoniobacter flavus Ellin428] Length = 444 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 81/269 (30%), Positives = 127/269 (47%), Gaps = 15/269 (5%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ VA+ + + K ++V Q+++ + + +L ++P N + Sbjct: 38 LLEADVEFNVAKGFIARVKEKALGEEVLRGVHPGQQIVKIFHDELTALLGGDNEPLNLE- 96 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 +P I++VG+NG GKTT KL+ + G +L A D R AAI+QL A + Sbjct: 97 --KPARIMMVGLNGAGKTTSSAKLAMWLKKQGKAPLLIACDLHRPAAIEQLATLARQVGV 154 Query: 168 DFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 G D + A A+ + +V I DTAGR + L+ I + L+ Sbjct: 155 PCFTPPPGEKDVLKVGRLAADWAKEQPGNVQIYDTAGRQEIDEPLIQEIKALREFLQ--- 211 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P VL V DA TGQ A+ FH TGL++TK+DG ARGG + + + P+ Sbjct: 212 ---PQEVLLVADAATGQQAVSVATHFHQALNITGLVLTKLDGDARGGAALSMRQVTQRPI 268 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G+GE ++ EPF + I G D Sbjct: 269 KFAGIGEKLDQFEPFFPDRLAGRILGMGD 297 >gi|328885329|emb|CCA58568.1| Signal recognition particle, subunit Ffh SRP54 [Streptomyces venezuelae ATCC 10712] Length = 517 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 84/288 (29%), Positives = 144/288 (50%), Gaps = 16/288 (5%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSE 90 +S + +D RE + L+ +D+ + V + ++ + + +VS Q+V+ V++ Sbjct: 22 LSEQDIDSAARE-IRIALLEADVALPVVRAFIKNVKERSLGAEVSKALNPSQQVIKIVND 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + +L ++ + + P VI++ G+ G GKTT+ GKL + G +L A D Sbjct: 81 ELISILGGETRRLRFAKTA-PTVIMLAGLQGAGKTTLAGKLGLWLKSQGHSPLLVACDLQ 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 R A++QL + ADR F + G+ D +A ++ + A+ K DV+I+DTAGRL Sbjct: 140 RPNAVNQLSVVADRAGVAFYGPQPGNGVGDPVQVAKDSIEHARTKLYDVVIVDTAGRLGI 199 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + LM IR D +P +L V+DA GQ+A+ E F G G++++K+D Sbjct: 200 DQELMQQAAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLD 253 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G ARGG + I + F GE ++D + F ++ I G D Sbjct: 254 GDARGGAALSIAHVTGKQIMFASNGEKLDDFDAFHPDRMASRILGMGD 301 >gi|171683961|ref|XP_001906922.1| hypothetical protein [Podospora anserina S mat+] gi|170941941|emb|CAP67593.1| unnamed protein product [Podospora anserina S mat+] Length = 646 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 92/281 (32%), Positives = 139/281 (49%), Gaps = 33/281 (11%) Query: 40 RLDDGVREELEDLLIRSDIGV-AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 RL +GV +EL + S + A QK +E LTK S+ +L ++ + Sbjct: 373 RLCEGVEKELVGVKTGSFESINARIQKAMEASLTKMLTPTSSLD-LLREIDAITSPSATS 431 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 L K RP+V+ +VGVNGVGK+T + K+ + KV++AAGDTFRS A++QL Sbjct: 432 LRK-------ARPYVMSIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVEQL 484 Query: 159 KIWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 + R + E G DAA +A +A A + +V++IDTAGR HN+ Sbjct: 485 AVHV-RNLKELTAREGGQVELYQKGYGKDAATVAKDAVAYAAQEGFNVVLIDTAGRRHND 543 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMT 264 LM+ + K + + P +L V A G +++ Q F+A G+ G I++ Sbjct: 544 QRLMSSLEKFAKFAQ------PDKILMV--ALVGTDSVAQARNFNAAFGSGRSLDGFIIS 595 Query: 265 KMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 K D G L+ IV +PV F+GVG+ +DL F K Sbjct: 596 KCDTVGDMVGTLVSIVHATNVPVLFVGVGQHYSDLRNFSVK 636 >gi|68468044|ref|XP_721861.1| hypothetical protein CaO19.3952 [Candida albicans SC5314] gi|46443803|gb|EAL03082.1| hypothetical protein CaO19.3952 [Candida albicans SC5314] Length = 535 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 85/289 (29%), Positives = 145/289 (50%), Gaps = 33/289 (11%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA-KDVSVQRVLYDVSELIHKMLMP-LS 100 D V ++ + LI +I +A I++++ TK A K V++ +++ + K+L P +S Sbjct: 245 DEVSKKFREQLITKNITPGIATTIIDKIKTKLSANKKVTMAVYKQALTDELTKILTPNVS 304 Query: 101 KPF------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 N + + RP+VI VVGVNGVGK+T + KL+ L V++ A DTFRS A Sbjct: 305 TDLLHDIKRNAELNTRPYVISVVGVNGVGKSTNLAKLAFWFLQNNLNVLICACDTFRSGA 364 Query: 155 IDQLKIWAD------------RTSADFVCSEIGS--DAAALAYEAFKQAQAKKVDVLIID 200 ++QLK+ + ++ D GS A +A + A+ K D+++ID Sbjct: 365 VEQLKVHVNNLNRLNEASTNTKSRIDIFEKGYGSGDHVVQTAKQAVQYAEENKFDIVLID 424 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGR H+N+ LMA + K D P+ ++ V +A G +++ Q F+ G Sbjct: 425 TAGRTHSNAKLMAPLKKF------GDAANPNKIIMVGEALVGTDSVEQATNFNKAFGNKR 478 Query: 261 ----LIMTKMDGTAR-GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 I++K+D G +I +V+ +P+ F+G G+ D++ K Sbjct: 479 TLDFFIISKVDTVGDLVGTMINMVMATNVPILFVGTGQTYTDIKRLSVK 527 >gi|260912277|ref|ZP_05918828.1| signal recognition particle protein Ffh [Prevotella sp. oral taxon 472 str. F0295] gi|260633578|gb|EEX51717.1| signal recognition particle protein Ffh [Prevotella sp. oral taxon 472 str. F0295] Length = 450 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 109/210 (51%), Gaps = 7/210 (3%) Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRT 165 +RP +IL+ G+ G GKTT GKL+ + K +L A D +R AAI+QLK+ A + Sbjct: 95 LKNRPAIILMSGLQGSGKTTFSGKLANLLKSKQHKNPLLVACDVYRPAAIEQLKVVAQQV 154 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + +A A ++A++K DV+I+DTAGRL + +M I ++ + L Sbjct: 155 GVSVYSEPDNKNVVEIANNAIREAKSKGNDVVIVDTAGRLAVDEEMMDEIYRLKQALN-- 212 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P L V+D+ TGQ+A+ F+ G+++TK+DG RGG + I P Sbjct: 213 ----PDETLFVVDSMTGQDAVNTAREFNDRLDIDGVVLTKLDGDTRGGAALSIRTVVTKP 268 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F+G GE + ++ F + + I G D Sbjct: 269 IKFVGTGEKMEAIDVFHPERMADRILGMGD 298 >gi|168057840|ref|XP_001780920.1| predicted protein [Physcomitrella patens subsp. patens] gi|162667633|gb|EDQ54258.1| predicted protein [Physcomitrella patens subsp. patens] Length = 633 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 107/202 (52%), Gaps = 18/202 (8%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 RP+ I+ VGVNGVGK+T + K++ + +KVM+AA DTFRS A++QL+ A R Sbjct: 425 RPYTIVFVGVNGVGKSTNLAKVAYWLQQHDIKVMMAACDTFRSGAVEQLRTHARRLQIPI 484 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 D A +A +A +A+ K DV+++DTAGR+ +N LM + K+I + + Sbjct: 485 FERGYEKDPAVVARDAIYEAKRTKQDVVLVDTAGRMQDNEPLMRALSKLINM------ND 538 Query: 230 PHSVLQVLDATTGQNALRQVEMFH-----------AVAGTTGLIMTKMDG-TARGGGLIP 277 P VL V +A G + + Q+ F+ G+++TK D + G + Sbjct: 539 PDLVLFVGEALVGNDGVHQLTQFNQKLADLSSTSSQTQSIDGILLTKFDTIDDKVGAALS 598 Query: 278 IVVTHKIPVYFLGVGEGINDLE 299 +V T PV F+G G+ DL+ Sbjct: 599 MVYTSGAPVMFVGCGQNYTDLK 620 >gi|328787996|ref|XP_395013.3| PREDICTED: signal recognition particle receptor subunit alpha homolog isoform 1 [Apis mellifera] Length = 614 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 83/295 (28%), Positives = 146/295 (49%), Gaps = 41/295 (13%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP- 98 V ++L+D LI ++ +A+K+ + + K K D V +++ + ++L P Sbjct: 318 VLDKLKDHLISKNVAADIAKKLCDSVGVKLEGKILGTFDSVASTVKATLTDALVQILSPK 377 Query: 99 -----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 L +HRP+V+ GVNGVGK+T + K+ + + +V++AA DTFR+ Sbjct: 378 RRVDILRDAMEAKNNHRPYVMTFCGVNGVGKSTNLAKICFWLIENNFRVLIAACDTFRAG 437 Query: 154 AIDQLKI-------------WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 A++QL+ +++ G DAA +A EA + A+ K+D++++D Sbjct: 438 AVEQLRTHMRHLNALHPPEKHGNQSMVQLYEKGYGKDAAGIAMEAIRFAKDSKIDIVLVD 497 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT 259 TAGR+ +N LM + K+I+V + P VL V +A G A+ Q+ F+ A+A + Sbjct: 498 TAGRMQDNEPLMRALAKLIKV------NEPDVVLFVGEALVGNEAVDQLVKFNQALADHS 551 Query: 260 ---------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 G+++TK D + G I + P+ F+G G+ DL+ AK Sbjct: 552 QSSNPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAK 606 >gi|295102421|emb|CBK99966.1| signal recognition particle subunit FFH/SRP54 (srp54) [Faecalibacterium prausnitzii L2-6] Length = 451 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 82/274 (29%), Positives = 135/274 (49%), Gaps = 14/274 (5%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ VA+ ++ + ++V Q+V+ V+E + ++ P Sbjct: 34 EVRMALLEADVNYKVAKDFCAKVSERAMGQEVMESLTPAQQVVKIVNEELVALMGGEEAP 93 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 + +I++ G+ G GKTT KL+K G + ML A D +R AAIDQL++ Sbjct: 94 RLVIKNKGQTIIMLCGLQGNGKTTHAAKLAKYYIKQGRRPMLVACDIYRPAAIDQLQVVG 153 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 + A V + G A+A +A A+ D++I+DTAGRL + +LM + L Sbjct: 154 RQAGAP-VFTLPGEKPPAIAKKALAHAKDYGNDIIILDTAGRLQIDEVLM-------QEL 205 Query: 223 KRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 ++ P L V+DA GQ+A+ + F+ G G+I+TK DG RGG + ++ Sbjct: 206 VQIKEAVPVDETLLVVDAMAGQDAVNVAKTFNETVGIDGIILTKTDGDTRGGAALSVLSV 265 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F G GE ++DLE F + I G D Sbjct: 266 TGKPIKFQGTGEKLDDLEVFHPSRMAGRILGMGD 299 >gi|288928375|ref|ZP_06422222.1| signal recognition particle protein [Prevotella sp. oral taxon 317 str. F0108] gi|288331209|gb|EFC69793.1| signal recognition particle protein [Prevotella sp. oral taxon 317 str. F0108] Length = 450 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 110/210 (52%), Gaps = 7/210 (3%) Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRT 165 ++RP +IL+ G+ G GKTT GKL+ + K +L A D +R AAI+QL++ A + Sbjct: 95 LTNRPAIILMSGLQGSGKTTFSGKLANLLKGKQHKNPLLVACDVYRPAAIEQLRVVAQQV 154 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + +A A ++A+AK DV+I+DTAGRL + +M I ++ + L Sbjct: 155 GVPVYSEPDNKNVVEIANNAIREAKAKGNDVVIVDTAGRLAVDEEMMDEIYRLKQALN-- 212 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P L V+D+ TGQ+A+ F+ G+++TK+DG RGG + I P Sbjct: 213 ----PDETLFVVDSMTGQDAVNTAREFNDRLDIDGVVLTKLDGDTRGGAALSIRTVVTKP 268 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F+G GE + ++ F + + I G D Sbjct: 269 IKFVGTGEKMEAIDVFHPERMADRILGMGD 298 >gi|47459362|ref|YP_016224.1| signal recognition particle GTPase [Mycoplasma mobile 163K] gi|47458692|gb|AAT28013.1| signal recognition particle GTPase [Mycoplasma mobile 163K] Length = 447 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 76/264 (28%), Positives = 132/264 (50%), Gaps = 15/264 (5%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELL-----TKRYAKDVSVQRVLYDVSELIHKMLMPL 99 + E++ L+ +D+ + V ++ ++ + T+ K Q+V+ V E + K+ Sbjct: 30 ITREIKLALLEADVNLIVVKEFIQNIKDQTIGTELIGKLNPGQQVIKIVKEELVKIFGNK 89 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRSAAIDQ 157 +K N S +P + ++ G+ G GKTT I K++ K K+++ AGD +R AAIDQ Sbjct: 90 TKEIN--ISKKPTIFMIAGLQGGGKTTTIAKIAHFYKNKKKIEKILIVAGDIYRPAAIDQ 147 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L + D + + EA +A+ + D+++IDTAGRL + LM + + Sbjct: 148 LDTLSKMVGVDIYKNSVDIKPQQTVKEAIDKAKNEYYDLVLIDTAGRLSIDEKLMNELIE 207 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + + K P ++ V DA +GQ+ + F TG I+TK+D ARGG + Sbjct: 208 IKEIAK------PQEIIFVSDALSGQDIFNVAKTFDEKLKLTGSIITKLDSDARGGAALS 261 Query: 278 IVVTHKIPVYFLGVGEGINDLEPF 301 I IP+ F+G GE + +L+ F Sbjct: 262 ITKMLNIPILFIGTGEKVTNLDLF 285 >gi|325914818|ref|ZP_08177153.1| signal recognition particle subunit FFH/SRP54 (srp54) [Xanthomonas vesicatoria ATCC 35937] gi|325538909|gb|EGD10570.1| signal recognition particle subunit FFH/SRP54 (srp54) [Xanthomonas vesicatoria ATCC 35937] Length = 446 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 82/275 (29%), Positives = 137/275 (49%), Gaps = 22/275 (8%) Query: 39 RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 R ++ +RE E+ L+ +D+ + V Q ++E + + ++V Q ++ V + Sbjct: 9 RLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKIVRD 68 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149 + ++ + N + P +IL+ G+ G GKTT +GKL+K + + K VM+ + D Sbjct: 69 ELTAVMGAAAADLNLNVPA-PAIILMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADV 127 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI+QLK A++ F S+ + A A+ DVL++DTAGRL + Sbjct: 128 YRPAAIEQLKTLAEQVGVLFFPSDASQKPVDIVRAAISDARKSFADVLLVDTAGRLAIDQ 187 Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 +M I + HA P L V+DA TGQ+A + F TG+++TK Sbjct: 188 AMMDEIKAL---------HAAVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKT 238 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 DG ARGG + + P+ F+G GE + L+ F Sbjct: 239 DGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVF 273 >gi|315282799|ref|ZP_07871124.1| signal recognition particle protein [Listeria marthii FSL S4-120] gi|313613554|gb|EFR87373.1| signal recognition particle protein [Listeria marthii FSL S4-120] Length = 450 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K +L A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A ++A+ + +D +IIDTAGRLH + LM + ++ + K Sbjct: 159 PVFSLGDQVSPVEIAKQAIEKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEIAK---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ TGQ+A+ + F+ TG+++TK+DG RGG + I P+ Sbjct: 215 --PTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ GE + LE F ++ I G D Sbjct: 273 FIATGEKMEALETFHPDRMASRILGMGD 300 >gi|82705448|ref|XP_726974.1| signal recognition particle protein SRP54 [Plasmodium yoelii yoelii str. 17XNL] gi|23482603|gb|EAA18539.1| signal recognition particle protein SRP54 [Plasmodium yoelii yoelii] Length = 500 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 90/285 (31%), Positives = 138/285 (48%), Gaps = 20/285 (7%) Query: 42 DDGVREE-LEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVL--YDVSE 90 DD V EE L+++ LI +DI V + K ++ + K K+ + +R++ Y V E Sbjct: 24 DDNVIEECLKEIVRALILADINV-IYLKDIKSNIKKNIEKNAAAYGNNKKRLVQKYVVEE 82 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 LI K+L + + R +VIL VG+ G GKTT K + G K L DTF Sbjct: 83 LI-KLLEGKKESYVPKKGER-NVILFVGLQGSGKTTTCTKYAHYYQKKGFKTALICADTF 140 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R+ A DQLK A + F S D +A + K D++I+D++GR + Sbjct: 141 RAGAFDQLKQNAAKVKIPFYGSYSEVDPVKIATDGVNTFLKDKYDLIIVDSSGRHKQEND 200 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 L + ++ +K P ++ V+D+ GQ+ Q F +I+TK+DG A Sbjct: 201 LFEEMKQVENSIK------PEEIVFVIDSHIGQSCHDQAMAFKNSVKVGSIIITKIDGHA 254 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +GGG + V P+ F+G GE +ND E F AK F + + G D Sbjct: 255 KGGGALSAVSAIGCPITFIGTGEHVNDFEKFEAKSFVSRLLGLGD 299 >gi|294673857|ref|YP_003574473.1| signal recognition particle protein [Prevotella ruminicola 23] gi|294474161|gb|ADE83550.1| signal recognition particle protein [Prevotella ruminicola 23] Length = 453 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 109/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +IL+ G+ G GKTT GKL+K + + K +L A D +R AAI+QLK+ + Sbjct: 102 PAIILMSGLQGSGKTTFSGKLAKMLKERNHKKPLLVACDVYRPAAIEQLKVVGETVGVPV 161 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + +A A ++A++K DV+IIDTAGRL + +M I + + + Sbjct: 162 YSEPDNKNVVEIANHAIQEAKSKANDVVIIDTAGRLAVDEEMMQEIETLKKAVN------ 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P+ L V+D+ TGQ+A+ + F+ G+I+TK+DG RGG + I P+ F+ Sbjct: 216 PNETLFVVDSMTGQDAVNTAKEFNDRLDFDGVILTKLDGDTRGGAALSIRTVVTKPIKFV 275 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE + ++ F + + I G D Sbjct: 276 GTGEKMEAIDVFYPERMADRILGMGD 301 >gi|291563269|emb|CBL42085.1| signal recognition particle protein [butyrate-producing bacterium SS3/4] Length = 454 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 82/304 (26%), Positives = 155/304 (50%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S + KL+ ++ RL + V+ L+++ L+ +D+ V ++ + + + Sbjct: 3 FESLADKLQNVFKNLRGKGRLTEADVKAALKEVKMALLEADVSFKVVKQFISSVQERAIG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + K++ + + VI+++G+ G GKTT KL Sbjct: 63 QDVLESLTPGQMVIKIVNEELVKLMGSETTEIALKPQNEITVIMMIGLQGAGKTTTTAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K G K +LAA D +R AAI QL++ ++ + +A A + A+ Sbjct: 123 AGKFKAKGRKPLLAACDVYRPAAIKQLQVNGEKVGVPVFTMGDNQNPVNIAKAAVEHARK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + ++++ +DTAGRL + +M +++ + + ++ ++L V+DA TGQ+A+ Sbjct: 183 EGMNLVFLDTAGRLQIDESMM---DELVNIKEAVE--IDQTIL-VVDAMTGQDAVNVAGS 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G G+I+TK+DG RGG + I P+ ++G+GE ++DLE F ++ I Sbjct: 237 FNDKIGVDGVILTKLDGDTRGGAALSIRAVTGKPILYVGMGEKLSDLEQFYPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|312194948|ref|YP_004015009.1| signal recognition particle protein [Frankia sp. EuI1c] gi|311226284|gb|ADP79139.1| signal recognition particle protein [Frankia sp. EuI1c] Length = 519 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 83/282 (29%), Positives = 133/282 (47%), Gaps = 17/282 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL--- 99 D E+ L+ +D+ + V + V + K A+ V V + L ++I + L Sbjct: 28 DATAREIRVALLEADVALPVVRAFVAAI--KERARGVEVSQALNPAQQVIKIVNEELIGI 85 Query: 100 --SKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 + N + P VIL+ G+ G GKTT+ GKL + G ML A D R A++ Sbjct: 86 LGGQTANIRLAKTPPTVILLAGLQGTGKTTLAGKLGMWLKKQGHTPMLVAADLQRPNAVN 145 Query: 157 QLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 QL++ R + E G+ D A+A +A A+ DV+++DTAGRL + LM Sbjct: 146 QLQVVGARAGVEVFAPEPGNGIGDPVAVARDAIAHARRNVFDVVVVDTAGRLGVDQELME 205 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + +K P +L V+DA GQ+A+ F G +G+++TK+DG ARGG Sbjct: 206 QAADIRDAVK------PDEILFVVDAMVGQDAVSTAMAFLDGVGFSGVVLTKLDGDARGG 259 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ F GE + D + F + ++ I G D Sbjct: 260 AALSVAHVTGRPIMFASTGEALGDFDVFHPERMASRILGMGD 301 >gi|242086847|ref|XP_002439256.1| hypothetical protein SORBIDRAFT_09g003220 [Sorghum bicolor] gi|241944541|gb|EES17686.1| hypothetical protein SORBIDRAFT_09g003220 [Sorghum bicolor] Length = 588 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 89/310 (28%), Positives = 148/310 (47%), Gaps = 30/310 (9%) Query: 18 TKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT----- 72 TKG+ S+ + G +I L ++ L+D L+ ++ +A+K+ E + Sbjct: 278 TKGWFSSVFQSIAGGNSVIERSDLQPALKA-LKDRLMTKNVAEEIAEKLCESVAASLEGK 336 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTT 126 K+ + + V + + ++L P L S RP+VI+ VGVNGVGK+T Sbjct: 337 KQGSFTSTASTVQAAMEAALVRILTPSRSIDVLRDVHAAKDSGRPYVIVFVGVNGVGKST 396 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 + K++ + L V LAA DTFRS A++QL+ A R D A +A +A Sbjct: 397 NLAKVAYWLLQHDLTVTLAACDTFRSGAVEQLRTHARRLQIPVFEKGYQRDPAVVAKQAI 456 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 ++A + DV+++DTAGR+ +N LM + K+I V ++P VL V +A G +A+ Sbjct: 457 EEAARSRSDVVLVDTAGRMQDNEPLMRALSKLIAV------NSPDLVLFVGEALVGNDAV 510 Query: 247 RQVEMFHAVAGT-----------TGLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEG 294 Q+ FH G++++K D + G + +V PV F+G G+ Sbjct: 511 DQLTQFHQKLADLSPVHVEKRLIDGILLSKFDTVDDKVGAALSMVYVSGAPVMFVGCGQS 570 Query: 295 INDLEPFVAK 304 DL+ K Sbjct: 571 YTDLKKLNVK 580 >gi|167571288|ref|ZP_02364162.1| signal recognition particle protein [Burkholderia oklahomensis C6786] Length = 455 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 109/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +IL+ G+ G GKTT +GKL+K + + KV+ + D +R AAI QLK +++ ADF Sbjct: 104 PAIILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S +A A A+ DVL++DTAGRL + +M I + LK Sbjct: 164 FPSTPDQKPVDIANAAVDWAKRHYHDVLLVDTAGRLGIDEAMMQEITALHAALK------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG +RGG + + P+ F+ Sbjct: 218 PVETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F + I G D Sbjct: 278 GVAEKLDGLEIFHPDRMANRILGMGD 303 >gi|153875262|ref|ZP_02003141.1| truncated signal recognition particle protein [Beggiatoa sp. PS] gi|152068274|gb|EDN66859.1| truncated signal recognition particle protein [Beggiatoa sp. PS] Length = 322 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 64/173 (36%), Positives = 96/173 (55%), Gaps = 6/173 (3%) Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 ML + D +R AAI QL+ A++ A F S+ +A A +QA+ + +DVL++DTA Sbjct: 1 MLVSCDIYRPAAIKQLETLAEQVGAKFFPSDPTQKPVDIASAAIEQARNQFIDVLLVDTA 60 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRLH + +M I ++ + P L V+D+ TGQ+A + + F+ TG+I Sbjct: 61 GRLHIDDEMMDEIKELHGATQ------PTETLFVVDSMTGQDAAKTAKAFNDALPLTGVI 114 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +TK DG ARGG + + P+ FLG+GE IN LEPF ++ I G D Sbjct: 115 LTKTDGDARGGAALSVRHLTGKPIKFLGIGEKINALEPFYPDRLASRIIGQGD 167 >gi|260591562|ref|ZP_05857020.1| signal recognition particle protein [Prevotella veroralis F0319] gi|260536593|gb|EEX19210.1| signal recognition particle protein [Prevotella veroralis F0319] Length = 451 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 80/265 (30%), Positives = 135/265 (50%), Gaps = 15/265 (5%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL- 99 V E L+D+ L+ +D+ VA+ + + K +V + + + +++H L L Sbjct: 27 VAETLKDVRRALLDADVNYKVAKSFTDTVKQKALGMNVLTAVKPGQLMVKIVHDELAELM 86 Query: 100 -SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQ 157 + + ++RP +IL+ G+ G GKTT GKL+ + K +L A D +R AAIDQ Sbjct: 87 GGEAVGLNLTNRPAIILMSGLQGSGKTTFSGKLANMLKTKEHKNPLLVACDVYRPAAIDQ 146 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 LK+ ++ + +A A +A+AK DV+IIDTAGRL + + Sbjct: 147 LKVVGEQVGVPVYSELENKNVNEIADHALAEAKAKGCDVVIIDTAGRLAVDE-------E 199 Query: 218 MIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 M+ ++ L H P L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + Sbjct: 200 MMNEIESLKNHVNPDETLFVVDSMTGQDAVNTAKEFNDRLDFNGVVLTKLDGDTRGGAAL 259 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301 I P+ F+G GE + ++ F Sbjct: 260 SIRTVVTKPIKFIGTGEKMEAIDVF 284 >gi|86133270|ref|ZP_01051852.1| signal recognition 54 kDa protein (SRP54) [Polaribacter sp. MED152] gi|85820133|gb|EAQ41280.1| signal recognition 54 kDa protein (SRP54) [Polaribacter sp. MED152] Length = 442 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 79/276 (28%), Positives = 145/276 (52%), Gaps = 16/276 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSK 101 +E+ L+ +D+ +A++ +++ T+ +DV Q ++ V + + K++ + Sbjct: 32 KEVRRALLDADVNFKIAKEFTKKVQTEAIGQDVLTTLNPGQLMVKLVKDELTKLMGGETV 91 Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKI 160 N S P VIL+ G+ G GKTT GKL+ + + +V+L D +R AAI+QL++ Sbjct: 92 GVNLGGS--PTVILMSGLQGSGKTTFSGKLANYLKTKKSKQVLLVGCDVYRPAAINQLQV 149 Query: 161 WADRTSADFVCSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 ++ + V +E+G++ ++ A K A+A +V+IIDTAGRL + +M I + Sbjct: 150 VGEQIGVE-VYAEVGNNNPVEISQNAIKHAKANGKNVVIIDTAGRLAVDQEMMTEISNIH 208 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 + + P L V+D+ TGQ+A+ + F+ + G+++TK+DG RGG + I Sbjct: 209 KAI------TPQETLFVVDSMTGQDAVNTAKAFNDILNFDGVVLTKLDGDTRGGAALSIK 262 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + ++ F + I G D Sbjct: 263 SVVNKPIKFIGTGEKMEAIDVFYPDRMADRILGMGD 298 >gi|153810624|ref|ZP_01963292.1| hypothetical protein RUMOBE_01008 [Ruminococcus obeum ATCC 29174] gi|149833020|gb|EDM88102.1| hypothetical protein RUMOBE_01008 [Ruminococcus obeum ATCC 29174] Length = 211 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 78/199 (39%), Positives = 123/199 (61%), Gaps = 10/199 (5%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL- 70 + ++L G T + G I S +D+ EELE++LI DIG+ I+E L Sbjct: 8 FFKRLVSGLTKTRDNIVAGFDSIFSGYSSIDEDFYEELEEILIMGDIGINATSAIIEHLK 67 Query: 71 --LTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 + +++ K+ + +++L ++ + +M + ++ ++F +R VILV+GVNGVGKTT Sbjct: 68 EQVAEKHIKNPMECKQLL--INSIKEQMRVDSTE---YEFENRKSVILVIGVNGVGKTTS 122 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 +GKL+ K+ D G KV+LAA DTFR+AA +QL WA+R D + + G+D A++ Y+A Sbjct: 123 VGKLAGKLKDQGKKVILAAADTFRAAAGEQLAQWANRAGVDLIGGQEGADPASIVYDAVA 182 Query: 188 QAQAKKVDVLIIDTAGRLH 206 A+A+ DVLI DTAGRLH Sbjct: 183 AAKARNADVLICDTAGRLH 201 >gi|171057067|ref|YP_001789416.1| signal recognition particle protein [Leptothrix cholodnii SP-6] gi|170774512|gb|ACB32651.1| signal recognition particle protein [Leptothrix cholodnii SP-6] Length = 455 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 106/209 (50%), Gaps = 13/209 (6%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT KL+K + + KV+ + D +R AAI+QLK + A++ Sbjct: 100 PAVILMAGLQGAGKTTTTAKLAKHLIERRKKKVLTVSADVYRPAAIEQLKTVTRQAGAEW 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S+ +A A A+ DVL++DTAGRL + LMA I D HA Sbjct: 160 FPSQGDQKPRDIALAAIDYARKHHFDVLLVDTAGRLAIDEALMAEIK---------DLHA 210 Query: 230 ---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA GQ+A+ F TG+++TK+DG +RGG + + P+ Sbjct: 211 TLTPIETLFVVDAMQGQDAINTARAFKEALPLTGIVLTKLDGDSRGGAALSVRSITGAPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F GV E I+ LE F A + + G D Sbjct: 271 KFAGVSEKIDGLEVFDADRHAGRVLGMGD 299 >gi|119960504|ref|YP_948184.1| signal recognition particle protein [Arthrobacter aurescens TC1] gi|119947363|gb|ABM06274.1| signal recognition particle protein [Arthrobacter aurescens TC1] Length = 526 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 88/316 (27%), Positives = 151/316 (47%), Gaps = 28/316 (8%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L ++ RL D E+ L+ +D+ V+V ++ + + Sbjct: 2 FNSLSDRLTATFKNLRGKGRLTEADVDATVREIRRALLDADVAVSVVREFTGRIRERALG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+++ V+E + ++L ++ + P +I++ G+ G GKTT+ GKL Sbjct: 62 AEVSGALNPSQQIVKIVNEELKEILGGETRRIRLAKTG-PTIIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---------DAAALA 182 SK + G ML A D R A+ QL++ R G+ D A+A Sbjct: 121 SKWLKAQGHSPMLVACDLQRPNAVTQLQVVGQRAGVPVFAPHPGATSELEHPAGDPVAVA 180 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A+ K DV+I+DTAGRL ++ +M ++ + + P+ VL V+D+ G Sbjct: 181 KAGVEEARQKLHDVVIVDTAGRLGVDAEMMDQARRIRQAI------IPNEVLFVIDSMIG 234 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 Q+A+ F TG++++K+DG ARGG + + PV F GEG++D E F Sbjct: 235 QDAVNTAMAFDEGVNFTGIVLSKLDGDARGGAALSVASVTGKPVMFASTGEGLDDFELFH 294 Query: 303 AKDFSAVITGCLDYGE 318 ++ I LD G+ Sbjct: 295 PDRMASRI---LDMGD 307 >gi|290974685|ref|XP_002670075.1| signal recognition particle receptor alpha subunit family protein [Naegleria gruberi] gi|284083630|gb|EFC37331.1| signal recognition particle receptor alpha subunit family protein [Naegleria gruberi] Length = 678 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 81/284 (28%), Positives = 142/284 (50%), Gaps = 34/284 (11%) Query: 43 DGVREELEDLLIR----SDIGVAVAQKIVEELLTKRYAKDVSVQ-RVLYDVSELIHKMLM 97 D V E+ + L++ +I V++ + E L+ K+ S++ V + E + ++L Sbjct: 387 DPVMEDFKQSLMKKNVAQEIAVSICDSVSENLVGKKLGTFSSIKSEVTKAMEEALTRILT 446 Query: 98 P------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 P L + RP+VI++ GVNGVGK+T + K+ + ++AA DTFR Sbjct: 447 PSRTINILKEASTVREQGRPYVIVMCGVNGVGKSTTLSKICYWLLQKEFSCLIAACDTFR 506 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 S A++QL++ A + G +AA+LA EA A+ D++++DTAGR+ +N L Sbjct: 507 SGAVEQLQVHARCLNVPVFQKGYGKNAASLAKEAINHAKKNGFDIVLVDTAGRMQDNEPL 566 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV---------AGTT--- 259 M + ++I+V + P VL V +A G + + Q++ F++ A T Sbjct: 567 MKSLIELIQV------NTPDLVLFVGEALVGNDGIDQLQKFNSSLKVLASSENAATKQTK 620 Query: 260 ----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 G+++TK D + G + +V P+ F+GVG+ DL Sbjct: 621 DLIDGIVLTKFDTIDEKVGAAVSMVHKTGHPIVFVGVGQTYTDL 664 >gi|167564167|ref|ZP_02357083.1| signal recognition particle protein [Burkholderia oklahomensis EO147] Length = 455 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 109/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +IL+ G+ G GKTT +GKL+K + + KV+ + D +R AAI QLK +++ ADF Sbjct: 104 PAIILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S +A A A+ DVL++DTAGRL + +M I + LK Sbjct: 164 FPSTPEQKPVDIANAAVDWAKRHYHDVLLVDTAGRLGIDEAMMQEITALHAALK------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG +RGG + + P+ F+ Sbjct: 218 PVETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F + I G D Sbjct: 278 GVAEKLDGLEIFHPDRMANRILGMGD 303 >gi|68072141|ref|XP_677984.1| signal recognition particle receptor alpha subunit, [Plasmodium berghei strain ANKA] gi|56498300|emb|CAH97107.1| signal recognition particle receptor alpha subunit, putative [Plasmodium berghei] Length = 546 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 88/292 (30%), Positives = 150/292 (51%), Gaps = 35/292 (11%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK-DVSVQRVLYDV 88 E I I ++ L V E+ D+LI +++ E+L+ K+ ++V++ + + Sbjct: 260 EKILQEIKTKLLSKNVASEICDILI---------ERMKEKLIGKKKTMFSLNVKKTVSTI 310 Query: 89 -SELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-L 140 S+ + +L+P L + + I +GVNGVGK+T + K+ + G L Sbjct: 311 FSDTLQSILIPKDSVDVLRSALEAKSLGKLYSICFLGVNGVGKSTNLAKVCYYLKTKGNL 370 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 K+M+AA DTFR+ AI+QL+I A G +AAA+A +A A+ +K DV++ID Sbjct: 371 KIMIAACDTFRAGAIEQLRIHAKCLDVYLFEKGYGKNAAAIAKDAISYAKKEKYDVILID 430 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-----AV 255 TAGR+ +N LM +GK+I + + P +L V +A G +A+ Q++ F+ A Sbjct: 431 TAGRMQDNEPLMRSLGKLILI------NNPDLILFVGEALVGNDAIDQLKKFNQTLIDAT 484 Query: 256 AGT-----TGLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 T G+++TK D + G + +V P+ F+GVG+ L+ F Sbjct: 485 CDTHKRTIDGILLTKFDTVDDKVGTALSMVYLTGRPIVFVGVGQKYTHLKKF 536 >gi|304392576|ref|ZP_07374516.1| signal recognition particle protein [Ahrensia sp. R2A130] gi|303295206|gb|EFL89566.1| signal recognition particle protein [Ahrensia sp. R2A130] Length = 511 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 86/274 (31%), Positives = 140/274 (51%), Gaps = 13/274 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELIHKMLMPL--SKPF 103 E+ LI +D+ + V ++ E++ K V V+ V V +++H L+ + ++ Sbjct: 33 EIRRALIEADVALEVVREFTEKVREKAVGASV-VKSVTPGQMVVKIVHDELVAMLGTEDE 91 Query: 104 NWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIW 161 D + P I++VG+ G GKTT GK++ ++ K V++A+ DT R AA +QL+ Sbjct: 92 RIDLNAPSPVGIMMVGLQGSGKTTTSGKIALRLKTRDRKKVLMASLDTRRPAAQEQLRQL 151 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 +T D + G + A+A A + + DV+I+DTAGR + LMA + IR Sbjct: 152 GVQTEVDTLPIVEGQEPVAIANRAMQAGKLGGYDVVILDTAGRTSIDEPLMAEMAD-IR- 209 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 PH +L V D+ TGQ+A+ + F G TGL++T++DG RGG + + Sbjct: 210 ----SAANPHEILLVADSLTGQDAVNLAQNFDTRVGITGLVLTRIDGDGRGGAALSMRAV 265 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ LG GE ++ LE F K + I G D Sbjct: 266 TGKPIKLLGTGEKMDALEDFYPKRIADRILGMGD 299 >gi|297191798|ref|ZP_06909196.1| signal recognition particle [Streptomyces pristinaespiralis ATCC 25486] gi|297151070|gb|EFH30942.1| signal recognition particle [Streptomyces pristinaespiralis ATCC 25486] Length = 517 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 81/281 (28%), Positives = 141/281 (50%), Gaps = 15/281 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 DG E+ L+ +D+ + V ++ ++++ + +VS Q+V+ V+E + +L Sbjct: 28 DGAAREIRIALLEADVALPVVREFIKQVKARSLGSEVSKALNPSQQVIKIVNEELIGILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + P VI++ G+ G GKTT+ GKL + G +L A D R A++Q Sbjct: 88 GETRRLRFAKTP-PTVIMLAGLQGAGKTTLAGKLGLWLKSQGHSPLLVACDLQRPNAVNQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R E G+ D +A ++ + A+ K D++I+DTAGRL + LM Sbjct: 147 LSVVAERAGVAVYAPEPGNGVGDPVQVAKDSIEYARTKVHDIVIVDTAGRLGIDQELMQQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P +L V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + + F GE ++D + F ++ I G D Sbjct: 261 ALSVAHVTGKQIMFASNGEKLDDFDAFHPDRMASRILGMGD 301 >gi|328952468|ref|YP_004369802.1| signal recognition particle protein [Desulfobacca acetoxidans DSM 11109] gi|328452792|gb|AEB08621.1| signal recognition particle protein [Desulfobacca acetoxidans DSM 11109] Length = 445 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 78/205 (38%), Positives = 111/205 (54%), Gaps = 6/205 (2%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P +++VG+ G GKTT KL+ + G + +LA DT R AAI+QL D Sbjct: 100 PVALMLVGLQGSGKTTTAAKLALYLKKQGRQPLLAPVDTQRPAAIEQLHRLGAEIGVDVY 159 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 S+ + ALA EA A AK DVL++DTAGRLH ++ LMA + + + P Sbjct: 160 RSQPQQNPVALASEAMAAAVAKGHDVLLLDTAGRLHVDAPLMAELQAIKADV------GP 213 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 +L V DA TGQ+A+ + FH TG+I+TK++G ARGG + + P+ FLG Sbjct: 214 AEILLVADAMTGQDAVAVAQNFHEALDLTGVILTKVEGDARGGAALSMRTVVNKPIKFLG 273 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 VGE ++ LE F ++ I G D Sbjct: 274 VGEKLDALEVFHPDRLASRILGMGD 298 >gi|255723319|ref|XP_002546593.1| conserved hypothetical protein [Candida tropicalis MYA-3404] gi|240130724|gb|EER30287.1| conserved hypothetical protein [Candida tropicalis MYA-3404] Length = 539 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 83/285 (29%), Positives = 145/285 (50%), Gaps = 31/285 (10%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYA-KDVSVQRVLYDVSELIHKMLMP-LSKP 102 V ++ D L+ +I +++I+E++ K K V++ +++ + K+L P +S Sbjct: 253 VSKQFNDQLMSKNIAPGTSKQIIEKIKNKLSGNKKVTMSMYKQALTDELTKILTPNVSTD 312 Query: 103 F------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 N + + RP+VI VVGVNGVGK+T + KL+ + V++ A DTFRS A++ Sbjct: 313 LLHDIKRNAETNTRPYVISVVGVNGVGKSTNLAKLAYWLLQNNFNVLICACDTFRSGAVE 372 Query: 157 QLKIWA---DRTSADFVCSEI---------GSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 QLK+ +R + + S+I G A +A + A K D+++IDTAGR Sbjct: 373 QLKVHVNNLNRLNENSENSKIDLFEKGYGSGDHVVQTAKQAIQYATDHKFDIVLIDTAGR 432 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG---- 260 H+N+ LMA + K D P+ ++ V +A G +++ Q F+ G Sbjct: 433 THSNAKLMAPLKKF------GDAANPNKIIMVGEALVGTDSVEQAINFNNAFGNKRSLDF 486 Query: 261 LIMTKMDGTAR-GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 I++K+D G +I +V+ K+P+ F+G G+ D++ K Sbjct: 487 FIISKVDTVGDLVGTMINMVMATKVPILFVGTGQTYTDIKRLSVK 531 >gi|327404872|ref|YP_004345710.1| signal recognition particle subunit FFH/SRP54 (srp54) [Fluviicola taffensis DSM 16823] gi|327320380|gb|AEA44872.1| signal recognition particle subunit FFH/SRP54 (srp54) [Fluviicola taffensis DSM 16823] Length = 449 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 111/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT GKL+ + + K +L A D +R AAIDQL + ++ + Sbjct: 99 PGVILMSGLQGSGKTTFSGKLANYLQTKKNKKPLLVACDVYRPAAIDQLHVLGEQLGIEV 158 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 ++ D +A +A A++K +V+I+DTAGRL + +M I ++ + + Sbjct: 159 YSNKEEKDPVKIATDAVIYARSKGFNVVIVDTAGRLAVDEAMMDEIARVKKAIN------ 212 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + I P+ F+ Sbjct: 213 PTETLFVVDSMTGQDAVNTAKAFNDRINFDGVVLTKLDGDTRGGAALSIKSIVDKPIKFV 272 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE ++ L+ F K + I G D Sbjct: 273 GTGEKMDALDVFYPKRMADRILGMGD 298 >gi|185178783|ref|ZP_02964582.1| signal recognition particle protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188518703|ref|ZP_03004129.1| signal recognition particle protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524136|ref|ZP_03004209.1| signal recognition particle protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867445|ref|ZP_03079449.1| signal recognition particle protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273576|ref|ZP_03206112.1| signal recognition particle protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225550943|ref|ZP_03771892.1| signal recognition particle protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551584|ref|ZP_03772530.1| signal recognition particle protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209401|gb|EDU06444.1| signal recognition particle protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188997693|gb|EDU66790.1| signal recognition particle protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659739|gb|EDX53119.1| signal recognition particle protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660921|gb|EDX54174.1| signal recognition particle protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198250096|gb|EDY74876.1| signal recognition particle protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225379399|gb|EEH01764.1| signal recognition particle protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225380097|gb|EEH02459.1| signal recognition particle protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 448 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 97/310 (31%), Positives = 156/310 (50%), Gaps = 35/310 (11%) Query: 28 LKEGITDIIS---SRRLDDGV--REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82 K I +I+S S++L + E++++LL S+I +A+ V L+ K++ K++ + Sbjct: 2 FKAMIGNIVSKQMSKKLKNATIAEEDIKELL--SEIRIALLDADVNLLVVKKFIKNIKEK 59 Query: 83 RV-LY--------DV------SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 + LY DV EL+ +L +KP N S I++VG+ G GKTT Sbjct: 60 TIGLYVEQNQKPADVVLKVIKDELVE-ILGKENKPVNTAKSQLK--IMMVGLQGSGKTTT 116 Query: 128 IGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE-A 185 GKL+ + K +L A D +R AAIDQL+ A + DF E G+ L + A Sbjct: 117 AGKLANYFRNKYNKKPLLVAADIYRPAAIDQLRTLAKQVRVDFW--EEGTQRPDLTVKNA 174 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 +A + +++I+DTAGRL N LM +++ V K L+P V V+DA GQ+ Sbjct: 175 LHKADENENNLVIVDTAGRLQTNEELMQ---ELVNVKKTLNPD---EVFLVVDAMAGQDI 228 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + F+ TG+I+TK+D AR G ++ + +P+ F G GE I ++ F + Sbjct: 229 INVATEFNNWLKLTGIIVTKLDSDARAGAVLSLTSLLNVPIKFTGTGEKIGSIDSFYPER 288 Query: 306 FSAVITGCLD 315 + I G D Sbjct: 289 MADRILGLGD 298 >gi|84498340|ref|ZP_00997137.1| signal recognition particle protein [Janibacter sp. HTCC2649] gi|84381840|gb|EAP97723.1| signal recognition particle protein [Janibacter sp. HTCC2649] Length = 536 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 88/325 (27%), Positives = 154/325 (47%), Gaps = 37/325 (11%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L ++ + RL + V + + D+ L+ +D+ + V ++ + + Sbjct: 2 FTSLSDRLTATFKNLRTKGRLSESDVNKTVRDIRMALLDADVALPVVKEFTSAVRERALG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+++ V+E + +L ++ + + P VI++ G+ G GKTT+ GKL Sbjct: 62 AEVSQSLNPAQQIVKIVNEELVDILGGQTRTIRFAKTG-PTVIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--------------- 176 ++ + D G +L A D R A+ QL++ +R E G+ Sbjct: 121 ARWLKDQGHTPILVAADLQRPNAVTQLQVVGERAGVPVFAPEQGNVGGHDAVGGTGEGTR 180 Query: 177 ---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 D ++ + ++A K DV+I+DTAGRL ++ LM G + + P+ V Sbjct: 181 SFGDPVTVSRDGIREAVNKHHDVVIVDTAGRLAVDADLMKQAGDIRAAIN------PNEV 234 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L V+DA GQ A+ E F TG++++K+DG ARGG + + P+ F GE Sbjct: 235 LFVIDAMIGQAAVETAEAFLEGVDFTGVVLSKLDGDARGGAALSVAKVTGRPIMFASTGE 294 Query: 294 GINDLEPFVAKDFSAVITGCLDYGE 318 G+ D E F ++ I LD G+ Sbjct: 295 GVKDFEVFHPDRMASRI---LDMGD 316 >gi|78776651|ref|YP_392966.1| Signal recognition particle protein [Sulfurimonas denitrificans DSM 1251] gi|78497191|gb|ABB43731.1| signal recognition particle subunit FFH/SRP54 (srp54) [Sulfurimonas denitrificans DSM 1251] Length = 447 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 88/293 (30%), Positives = 148/293 (50%), Gaps = 36/293 (12%) Query: 28 LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELL------TKRY 75 L + T+ I R +D + +EL+ L+R+D V K+V++L+ TK+ Sbjct: 5 LTDSFTNAIKKIRFNDDDKALTKALDELKKSLLRAD----VNHKVVKDLIFKVQIETKKN 60 Query: 76 A--KDV---SVQRVLYDVSELI-HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 KD +++ LY++ E+ ++ + SKP P VIL+ G+ G GKTT Sbjct: 61 GIGKDQFLEALRNALYELLEIGGNRGFVFASKP--------PTVILMTGLQGSGKTTTTA 112 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + + KVM+ A D R AA++QL+ + + E + + A K+A Sbjct: 113 KLANYLKNKQKKVMVVAADLQRLAAVEQLRQLTQQVGVELYEDESTKNPVEVVTAALKKA 172 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DV++IDTAGRL ++ LM + +K P + V D+ TGQ+A++ Sbjct: 173 NSGIYDVVLIDTAGRLAIDNELM----DELEAVKY--AANPSEIFYVADSMTGQDAIKTA 226 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 F G G+I++K DG ++GG + + ++P+ F+G GE I DLE F+ Sbjct: 227 TAFKEKIGIDGVILSKYDGDSKGGIALGLSSQVQVPLRFIGSGEKIEDLEVFL 279 >gi|116618655|ref|YP_819026.1| signal recognition particle subunit FFH/SRP54 (srp54) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097502|gb|ABJ62653.1| signal recognition particle subunit FFH/SRP54 (srp54) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 491 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 84/307 (27%), Positives = 147/307 (47%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + I ++ R+ ++ +R + ++ L+ +D+ +K V + K Sbjct: 3 FENLTERLSKAIKNLTGHGRVSEEDLRATMREIRLALLEADVNYDTVKKFVANVREKASG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 D+ Q+++ V++ + + + P N P +I++ G+ G GKTT + KL Sbjct: 63 TDIMEGLNPAQQIVKIVNDELTATMGEEAVPLNKS-PKIPTIIMMAGLQGAGKTTTVAKL 121 Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQ 188 + K+ ++ + +L A D +R AAIDQL+I D +G+D + ++ Sbjct: 122 AYKLKNENNARPLLIAADIYRPAAIDQLEILG--RDLDIPVFSMGTDVNPRDIVRAGLEK 179 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A K D + IDTAGRL + LM + + + P +L +DA TGQNA Sbjct: 180 AAENKNDYVFIDTAGRLQIDEELMQELKDIAEIAD------PDEILLTVDAMTGQNAAET 233 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F A TG+++TK+DG RGG + I P+ F+G GE DL+ F ++ Sbjct: 234 AKGFSASLDLTGVVLTKLDGDTRGGAALSIRDVTGKPIKFVGQGEKPTDLDVFYPDRMAS 293 Query: 309 VITGCLD 315 I G D Sbjct: 294 RILGMGD 300 >gi|313889472|ref|ZP_07823120.1| signal recognition particle protein [Streptococcus pseudoporcinus SPIN 20026] gi|313122304|gb|EFR45395.1| signal recognition particle protein [Streptococcus pseudoporcinus SPIN 20026] Length = 517 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 86/308 (27%), Positives = 156/308 (50%), Gaps = 23/308 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S + +L+ +I R+L + V +E+ L+ +D+ + V + ++++ + Sbjct: 3 FESLTERLQGVFKNIRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKQVRERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130 ++ Q+++ V+E + +L S+ + + + P +I++VG+ G GKTT GK Sbjct: 63 HEIIDTLDPTQQIVKIVNEELTDILG--SETATIEKAPKIPTIIMMVGLQGAGKTTFAGK 120 Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD--AAALAYEAFK 187 L+ K+ + + ++ A D +R AAIDQLK + + ++G+D A + + Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDYPAVEIVRQGLT 178 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ + D ++IDTAGRL + LM + R +K L P+ +L V+D+ GQ A Sbjct: 179 LARENRNDYVLIDTAGRLQIDEKLMTEL----RDVKAL--ANPNEILLVVDSMIGQEAAN 232 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F+ TG+++TK+DG RGG + + P+ F G GE I D+E F S Sbjct: 233 VADEFNKQLEITGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGEKITDIETFHPDRMS 292 Query: 308 AVITGCLD 315 + I G D Sbjct: 293 SRILGMGD 300 >gi|254559237|ref|YP_003066332.1| signal recognition particle protein, GTPase [Methylobacterium extorquens DM4] gi|254266515|emb|CAX22279.1| signal recognition particle protein, GTPase [Methylobacterium extorquens DM4] Length = 520 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P IL+VG+ G GKTT K++++++ +V+LA+ DT R AA++QL + A + + Sbjct: 100 PVAILMVGLQGSGKTTTTAKIARRLNQRDKRRVLLASLDTRRPAAMEQLAVLAKQVEVES 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G A +A A + A+ DV+++DTAGR + LM ++ K Sbjct: 160 LPIVAGQSAVQIAKRAMEAARLGGFDVVMLDTAGRTTVDEGLMNEAAEVKAATK------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH VL V DA TGQ+A+ F G TG+++T+MDG +RGG + + P+ + Sbjct: 214 PHEVLLVADALTGQDAVNTARAFDERLGVTGIVLTRMDGDSRGGAALSMRAVTGKPIKLV 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE ++ LE F + I G D Sbjct: 274 GVGEKVDALEEFHPHRVANRILGMGD 299 >gi|159036836|ref|YP_001536089.1| signal recognition particle protein [Salinispora arenicola CNS-205] gi|157915671|gb|ABV97098.1| signal recognition particle protein [Salinispora arenicola CNS-205] Length = 514 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 79/281 (28%), Positives = 136/281 (48%), Gaps = 15/281 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + + + + +VS Q+++ V+E + +L Sbjct: 28 DATAREIRLALLEADVALPVVKGFIARVKERARGAEVSQALNPAQQIIKIVNEELINVLG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 + + P VI++ G+ G GKTT+ GKL+ + G + +L A D R A+ Q Sbjct: 88 GEGRRLQF-AKQPPTVIMLAGLQGSGKTTLAGKLASWLRGQGHQPLLVAADLQRPNAVGQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L++ R + E G+ D +A + + A+ D++I+DTAGRL ++ +M Sbjct: 147 LQVLGGRAGVEVYAPEPGNGVGDPVQVAQASIEHARRAARDIVIVDTAGRLGIDAEMMRQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D P V+ V+DA GQ+A+R E F G TG++++K+DG ARGG Sbjct: 207 AAD-IR-----DAVDPDEVIFVIDAMVGQDAVRTAEAFRDGVGITGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ F GE + D + F ++ I G D Sbjct: 261 ALSVREVTGQPILFASTGEKLEDFDVFHPDRMASRILGMGD 301 >gi|118468367|ref|YP_886770.1| signal recognition particle protein [Mycobacterium smegmatis str. MC2 155] gi|118169654|gb|ABK70550.1| signal recognition particle protein [Mycobacterium smegmatis str. MC2 155] Length = 522 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 93/317 (29%), Positives = 146/317 (46%), Gaps = 29/317 (9%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + + RL D E+ L+ +D+ + V + V + + Sbjct: 2 FESLSDRLTGALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFVARIKERAKG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L ++ + + P VI++ G+ G GKTT+ GKL Sbjct: 62 AEVSAALNPAQQVVKIVNEELIGILGGETRQLAFAKTP-PTVIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA------ 185 +K + D G +L A D R A++QL+I +R G+ A E Sbjct: 121 AKWLKDKGHSPLLVACDLQRPGAVNQLQIVGERAGVAVFAPHPGTAPGAHETEGAGPGDP 180 Query: 186 -------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 +A+ K V+I+DTAGRL + +LMA IR D P L VLD Sbjct: 181 VAVAAAGLAEAKTKLYGVVIVDTAGRLGIDDVLMAQAAG-IR-----DAVQPDETLFVLD 234 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A GQ+A+ E F G TG+++TK+DG ARGG + + +P+ F GE + D Sbjct: 235 AMIGQDAVATAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFASAGEKLEDF 294 Query: 299 EPFVAKDFSAVITGCLD 315 + F ++ I G D Sbjct: 295 DVFHPDRMASRILGMGD 311 >gi|325287087|ref|YP_004262877.1| signal recognition particle protein [Cellulophaga lytica DSM 7489] gi|324322541|gb|ADY30006.1| signal recognition particle protein [Cellulophaga lytica DSM 7489] Length = 446 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 108/211 (51%), Gaps = 7/211 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAIDQLKIWADR 164 + S P VIL+ G+ G GKTT GKL+ + K +L A D +R AAIDQL + D+ Sbjct: 94 NLSGTPSVILMSGLQGSGKTTFSGKLANYLKTKKTKKPLLVACDVYRPAAIDQLHVVGDQ 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + ++ A+A A+A +V+IIDTAGRL + +M I + + + Sbjct: 154 IGVEVFSDRGNTNPVAIAEAGIAHAKANGHNVVIIDTAGRLAVDEEMMTEIANVHKAIN- 212 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P L V+D+ TGQ+A+ + F+ V G+I+TK+DG RGG I I Sbjct: 213 -----PQETLFVVDSMTGQDAVNTAKAFNDVLNFDGVILTKLDGDTRGGAAISIKSVVTK 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE ++ ++ F + I G D Sbjct: 268 PIKFIGTGEKMDAIDVFHPSRMAERILGMGD 298 >gi|283852121|ref|ZP_06369395.1| signal recognition particle protein [Desulfovibrio sp. FW1012B] gi|283572511|gb|EFC20497.1| signal recognition particle protein [Desulfovibrio sp. FW1012B] Length = 496 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 81/267 (30%), Positives = 128/267 (47%), Gaps = 10/267 (3%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPL--SKPFNWDFSH 109 L+ +D+ V + VE + + +DV V +++H+ ++ L + D Sbjct: 38 LLEADVNFKVVKDFVERVRERAMGQDVLKSLTPGQQVVKIVHEEMIELLGGQAQELDLKA 97 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P VI+VVG+ G GKTT KL+ K+ + K L D +R AAIDQL A + Sbjct: 98 SPAVIMVVGLQGSGKTTTCAKLALKLRREFKRKPYLVPADVYRPAAIDQLHKLASQLDIP 157 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 S + + A ++A+ DV+++DTAGRLH + LM + + Sbjct: 158 AFPSTPDQNPVDICLAALEEARRSGHDVVLLDTAGRLHIDQTLMDELAAIKAGTN----- 212 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P +L V DA TGQ+A+ F+ +G+++TKMDG ARGG + + + F Sbjct: 213 -PGEILFVADAMTGQDAVTVAAAFNERLDVSGIVLTKMDGDARGGAALSVRQVTGKAIKF 271 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +G GE + DLE F ++ I G D Sbjct: 272 VGTGEKVADLEVFHPDRAASRILGMGD 298 >gi|76800703|ref|YP_325711.1| signal recognition particle 54K protein [Natronomonas pharaonis DSM 2160] gi|121718419|sp|Q3IUP1|SRP54_NATPD RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|76556568|emb|CAI48139.1| signal recognition particle 54K protein [Natronomonas pharaonis DSM 2160] Length = 466 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 I++ G+ G GKTT K++ S GL+ + DTFR A DQ K +R DF Sbjct: 98 QTIVLAGLQGSGKTTTAAKMAWWFSKKGLRPAVIQTDTFRPGAYDQAKEMCERAEVDFYG 157 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 + D +A ++ DV I+DTAGR +++ A I ++ + +DP Sbjct: 158 NPDSDDPVEIAERGLEET--ADADVHIVDTAGR---HALEEALIDELEAIESAVDPD--- 209 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 L VLDA GQ A Q E FH G G+ +TK+DGTA+GGG + V + FLG Sbjct: 210 RNLLVLDAAIGQGAKDQAERFHDAVGIDGVAITKLDGTAKGGGALAAVDQTDSSIAFLGT 269 Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315 GE + D+E F F + + G D Sbjct: 270 GEEVKDIERFEPSGFISRLLGMGD 293 >gi|188024387|ref|ZP_02997051.1| signal recognition particle protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188018655|gb|EDU56695.1| signal recognition particle protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] Length = 448 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 97/310 (31%), Positives = 156/310 (50%), Gaps = 35/310 (11%) Query: 28 LKEGITDIIS---SRRLDDGV--REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82 K I +I+S S++L + E++++LL S+I +A+ V L+ K++ K++ + Sbjct: 2 FKAMIGNIVSKQMSKKLKNATIAEEDIKELL--SEIRIALLDADVNLLVVKKFIKNIKEK 59 Query: 83 RV-LY--------DV------SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 + LY DV EL+ +L +KP N S I++VG+ G GKTT Sbjct: 60 TIGLYVEQNQKPADVVLKVIKDELVE-ILGKENKPVNTAKSQLK--IMMVGLQGSGKTTT 116 Query: 128 IGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE-A 185 GKL+ + K +L A D +R AAIDQL+ A + DF E G+ L + A Sbjct: 117 AGKLANYFRNKYNKKPLLVAADIYRPAAIDQLRTLAKQVRVDFW--EEGAQRPDLTVKNA 174 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 +A + +++I+DTAGRL N LM +++ V K L+P V V+DA GQ+ Sbjct: 175 LHKADENENNLVIVDTAGRLQTNEELMQ---ELVNVKKTLNPD---EVFLVVDAMAGQDI 228 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + F+ TG+I+TK+D AR G ++ + +P+ F G GE I ++ F + Sbjct: 229 INVATEFNNWLKLTGIIVTKLDSDARAGAVLSLTSLLNVPIKFTGTGEKIGSIDSFYPER 288 Query: 306 FSAVITGCLD 315 + I G D Sbjct: 289 MADRILGLGD 298 >gi|305663445|ref|YP_003859733.1| GTP-binding signal recognition particle SRP54 G- domain [Ignisphaera aggregans DSM 17230] gi|304378014|gb|ADM27853.1| GTP-binding signal recognition particle SRP54 G- domain [Ignisphaera aggregans DSM 17230] Length = 453 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 86/282 (30%), Positives = 134/282 (47%), Gaps = 26/282 (9%) Query: 47 EELEDLLIRSDIGV----AVAQKIVEELLTKRYAKDVSVQ----RVLYD-VSELIHKMLM 97 +EL+ L+R+D+ V + + I E L +R +S Q +++YD +S L + Sbjct: 30 KELQKTLLRADVNVKLVLELTKNIRERALKERPPPYISKQEWFIKIVYDELSSLFGGDIK 89 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P P P++I++VGV G GKTT K++ G + L DT+R AA +Q Sbjct: 90 PQVFPVK-----TPYIIMLVGVQGSGKTTTAAKIAYFYKRYGYRPCLICTDTYRPAAYEQ 144 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L + + F SD +A + +++IIDTAGR G G+ Sbjct: 145 LYQLSKQIDVPFCGDPKSSDPIDIAKKCLSYCINNNTNIIIIDTAGR--------HGYGE 196 Query: 218 MIRVLKRLDPHA----PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 +LK + A P V+ ++DA+ GQ A FH+ +++TK+DGTA+GG Sbjct: 197 EEYLLKEMQDIAKAVNPDEVMLIIDASIGQKAYDLALRFHSATPIGSIVITKLDGTAKGG 256 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + V K + F+G GE I +LE F + F I G D Sbjct: 257 GALSAVAATKAIIKFIGTGEKIPELEVFDPRRFVGRILGLGD 298 >gi|222151070|ref|YP_002560224.1| signal recognition particle protein [Macrococcus caseolyticus JCSC5402] gi|222120193|dbj|BAH17528.1| signal recognition particle protein [Macrococcus caseolyticus JCSC5402] Length = 450 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 110/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT GKL+ M K +L A D +R AAI QL+ + D Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPLLVACDIYRPAAIQQLQTVGKQI--DI 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + + A + A+ + +D +IIDTAGRLH + LM + ++ + Sbjct: 159 PVFTLGDQVSPKEITERALQHAKEEHLDFVIIDTAGRLHIDEALMNELVEVKEI------ 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P ++ V+D+ TGQ+A+ E F TG+ +TK+DG RGG + I + P+ Sbjct: 213 SQPDEIMLVVDSMTGQDAVNVAESFDNQLDITGVTLTKLDGDTRGGAALSIRSVTQKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+ E ++ LEPF + ++ I G D Sbjct: 273 FVGMSEKLDGLEPFHPERMASRILGMGD 300 >gi|171920811|ref|ZP_02695409.2| signal recognition particle protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|171903576|gb|EDT49865.1| signal recognition particle protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] Length = 448 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 97/310 (31%), Positives = 156/310 (50%), Gaps = 35/310 (11%) Query: 28 LKEGITDIIS---SRRLDDGV--REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82 K I +I+S S++L + E++++LL S+I +A+ V L+ K++ K++ + Sbjct: 2 FKAMIGNIVSKQMSKKLKNATIAEEDIKELL--SEIRIALLDADVNLLVVKKFIKNIKEK 59 Query: 83 RV-LY--------DV------SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 + LY DV EL+ +L +KP N S I++VG+ G GKTT Sbjct: 60 TIGLYVEQNQKPADVVLKVIKDELVE-ILGKENKPVNTAKSQLK--IMMVGLQGSGKTTT 116 Query: 128 IGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE-A 185 GKL+ + K +L A D +R AAIDQL+ A + DF E G+ L + A Sbjct: 117 AGKLANYFRNKYNKKPLLVAADIYRPAAIDQLRTLAKQVRVDFW--EEGTQRPDLTVKNA 174 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 +A + +++I+DTAGRL N LM +++ V K L+P V V+DA GQ+ Sbjct: 175 LHKADENENNLVIVDTAGRLQTNEELMQ---ELVNVKKTLNPD---EVFLVVDAMAGQDI 228 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + F+ TG+I+TK+D AR G ++ + +P+ F G GE I ++ F + Sbjct: 229 INVATEFNNWLKLTGIIVTKLDSDARAGAVLSLTSLLNVPIKFTGTGEKIGSIDSFYPER 288 Query: 306 FSAVITGCLD 315 + I G D Sbjct: 289 MADRILGLGD 298 >gi|11094805|gb|AAG29734.1|AC084414_2 signal recognition particle 54 kDa protein 2 (SRP54), putative [Arabidopsis thaliana] Length = 522 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 95/317 (29%), Positives = 145/317 (45%), Gaps = 46/317 (14%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQ-------KIVE-ELLTKRYAKDVSVQRVLY 86 II + L++ + E + L++SD+ + + KIV E L + K +++ ++ Sbjct: 22 IIDEKALNECLNE-ITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIF 80 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 SEL KML P KP + V++ VG+ G GKTT K + G K L Sbjct: 81 --SELC-KMLDP-GKPAFAPKKAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVC 136 Query: 147 GDTFRSAAIDQLKIWA----------------------DRTSAD--FVCSEIG---SDAA 179 DTFR+ A DQLK A RTS F+C I SD Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGRFGLGQYLHISGLKRTSVTYMFLCPIIHYTESDPV 196 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 +A E + + D++I+DT+GR + L + ++ K P V+ V+D+ Sbjct: 197 KIAVEGVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATK------PDLVIFVMDS 250 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 + GQ A Q + F +I+TKMDG A+GGG + V K PV F+G GE +++ E Sbjct: 251 SIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFE 310 Query: 300 PFVAKDFSAVITGCLDY 316 F K F + + G D+ Sbjct: 311 VFDVKPFVSRLLGMGDW 327 >gi|325661102|ref|ZP_08149729.1| signal recognition particle protein [Lachnospiraceae bacterium 4_1_37FAA] gi|331085169|ref|ZP_08334255.1| signal recognition particle protein [Lachnospiraceae bacterium 9_1_43BFAA] gi|325472609|gb|EGC75820.1| signal recognition particle protein [Lachnospiraceae bacterium 4_1_37FAA] gi|330407952|gb|EGG87442.1| signal recognition particle protein [Lachnospiraceae bacterium 9_1_43BFAA] Length = 449 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 86/305 (28%), Positives = 151/305 (49%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S + KL+ ++ S RL ++ V+ L ++ L+ +D+ V + V+++ + Sbjct: 3 FDSLTEKLQNVFKNLRSKGRLTEEDVKLALREVKMALLEADVNFKVVKGFVKDVQERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + +++ + VI++ G+ G GKTT K+ Sbjct: 63 QDVMNGLNPGQMVIKIVNEELIRLMGSETTEIQLQPGQATTVIMMAGLQGAGKTTTTAKI 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K+ G K +L A D +R AAI QL++ ++ + +A A + A Sbjct: 123 AGKLKLKGKKPLLVACDVYRPAAIKQLQVNGEKQGVEVFSMGENHKPVNIAKAAMEHAAK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVE 250 +V+I+DTAGRLH + +M+ L+ + H H + V+DA TGQ+A+ Sbjct: 183 NGNNVVILDTAGRLHIDE-------EMMEELQEIKEHVEVHQTILVVDAMTGQDAVNVAN 235 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F+ G G+I+TK+DG RGG + I P+ ++G+GE ++DLE F ++ I Sbjct: 236 DFNQKIGIDGVIVTKLDGDTRGGAALSIRAVTGKPILYVGMGEKLSDLEQFYPDRMASRI 295 Query: 311 TGCLD 315 G D Sbjct: 296 LGMGD 300 >gi|238009706|gb|ACR35888.1| unknown [Zea mays] Length = 351 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 63/173 (36%), Positives = 89/173 (51%), Gaps = 6/173 (3%) Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 ML A D +R AAIDQL I + + + +A K+A+ K DV+I+DTA Sbjct: 1 MLVAADVYRPAAIDQLTILGKKVGVPVYSEGTEAKPSQIAKNGLKEAKVNKADVIIVDTA 60 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRL + +M + ++ + + P VL V+DA TGQ A V F+ G TG I Sbjct: 61 GRLQVDKAMMNELKEVKKAVN------PTEVLLVVDAMTGQEAAGLVSSFNDEIGITGAI 114 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +TK+DG +RGG + + P+ F+G GE I DLEPF + I G D Sbjct: 115 LTKLDGDSRGGAALSVKEVSGKPIKFVGQGERIEDLEPFYPDRMAQRILGMGD 167 >gi|260220058|emb|CBA27216.1| Signal recognition particle protein [Curvibacter putative symbiont of Hydra magnipapillata] Length = 395 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 107/209 (51%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P VIL+ G+ G GKTT GKL+K + + KV+ +GD +R AAI+QLK + Sbjct: 38 AQPPAVILMSGLQGAGKTTTTGKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTAQAG 97 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 A++ S + + A A+ DVL++DTAGRL + LM+ I + L Sbjct: 98 AEWFPSTPDQNPVDIGRAALDYAKKHFFDVLLVDTAGRLAIDEALMSEIKNLHAALN--- 154 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA GQ+A+ + F TG+I+TK DG +RGG + + P+ Sbjct: 155 ---PVETLFVVDAMQGQDAVNTAKAFKEALPLTGIILTKTDGDSRGGAALSVRQITGAPI 211 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G E ++ LE F A+ + I G D Sbjct: 212 KFAGTSEKLDGLEVFDAERHAGRILGMGD 240 >gi|170741843|ref|YP_001770498.1| signal recognition particle protein [Methylobacterium sp. 4-46] gi|168196117|gb|ACA18064.1| signal recognition particle protein [Methylobacterium sp. 4-46] Length = 526 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 81/274 (29%), Positives = 142/274 (51%), Gaps = 13/274 (4%) Query: 48 ELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ + V +K+ E+ + K V+ Q V+ V++ + ML ++ Sbjct: 33 EVRRALLEADVALEVVRDFTEKVREQAVGATVLKSVTPGQMVVKIVNDQLVAMLGAEAEI 92 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIW 161 + + + P IL+VG+ G GKTT K++++++ +V++A+ DT R AA++QL + Sbjct: 93 IDLN-APSPVAILMVGLQGSGKTTTTAKIARRLNGREKRRVLMASLDTRRPAAMEQLAVL 151 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 + + + G A +A A + A+ DV+++DTAGR+ + LM + ++ Sbjct: 152 GKQVGVETLPIVAGQSAVQIAKRAMEAARLGGFDVVMLDTAGRITLDEALMQEAAE-VKA 210 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 R PH VL V DA TGQ+A+ F G TG+++T+MDG ARGG + + Sbjct: 211 AAR-----PHEVLLVADALTGQDAVNTARAFDQRLGVTGIVLTRMDGDARGGAALSMRAV 265 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ +G GE ++ LE F + I G D Sbjct: 266 TGKPIKLVGTGEKVDALEEFHPARVANRILGMGD 299 >gi|317125420|ref|YP_004099532.1| signal recognition particle subunit FFH/SRP54 (srp54) [Intrasporangium calvum DSM 43043] gi|315589508|gb|ADU48805.1| signal recognition particle subunit FFH/SRP54 (srp54) [Intrasporangium calvum DSM 43043] Length = 540 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 84/308 (27%), Positives = 149/308 (48%), Gaps = 34/308 (11%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 FA+ S +L ++ RL + V + + D+ L+ +D+ + V ++ + + Sbjct: 2 FATLSDRLTATFKNLRGKGRLSESDVNKAVRDIRLALLDADVALPVVKRFTTAVRERALG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V+ Q+V+ V+E + +L ++ + + P VI++ G+ G GKTT GKL Sbjct: 62 EEVNQALNPAQQVVKIVNEELVTILGGETRQIRF-AKNPPTVIMLAGLQGSGKTTFAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--------------- 176 + + D G +L A D R A+ QL++ +R E G+ Sbjct: 121 GRWLKDRGHTPLLVAADLQRPNAVTQLEVVGERAGLKVFAPERGNVGGHDAVAGTGEGTR 180 Query: 177 ---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 D +++ + A+A++ DV+I+DTAGRL ++ LM + ++ P V Sbjct: 181 SFGDPVSVSRAGVEHARAQQHDVVIVDTAGRLAVDTNLMQQAADIRSAIQ------PDEV 234 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L V+DA GQ A+ + FH TG++++K+DG ARGG + I P+ F VGE Sbjct: 235 LFVIDAMIGQAAVETAQAFHEGVAFTGVVLSKLDGDARGGAALSIREVTGEPIMFASVGE 294 Query: 294 GINDLEPF 301 + D+E F Sbjct: 295 KVTDIEVF 302 >gi|257063724|ref|YP_003143396.1| signal recognition particle subunit FFH/SRP54 (srp54) [Slackia heliotrinireducens DSM 20476] gi|256791377|gb|ACV22047.1| signal recognition particle subunit FFH/SRP54 (srp54) [Slackia heliotrinireducens DSM 20476] Length = 478 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 88/305 (28%), Positives = 141/305 (46%), Gaps = 19/305 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L+ + + RL +D + + ++ L+ +D+ V ++ + TK+ Sbjct: 2 FESLSDRLQNIFSGLRGKGRLTEDDINSAMREIRMALLEADVNFKVVKQFTAD--TKQRC 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHRPHVILVVGVNGVGKTTVIGK 130 + V L ++ +L L+K + S P+VI++VG+ G GKTT K Sbjct: 60 LEAEVLESLTPAQNVVKIVLDELTKLLGENDAKLNTSSRIPNVIMLVGLQGSGKTTAAAK 119 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + G +L AGD +R AA DQL+ + G D +A + + A Sbjct: 120 LAYLLKGKGHVPLLVAGDVYRPAAADQLETLGGEIGVKVFRGD-GKDPVQIAKDGVRYAI 178 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 DV+I+DTAGRLH + +M + +K P +L V+DA TGQ+ + Sbjct: 179 DNLRDVVIVDTAGRLHVDEQMMDEAAAIKEAVK------PEEILMVVDAMTGQDVVNVAS 232 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G+IM+KMDG ARGGG + + P+ F+ GE + LE F + I Sbjct: 233 AFAEKVEFDGVIMSKMDGDARGGGALSLKQVTGKPIKFISAGEKPDSLEEFHPDRMAKRI 292 Query: 311 TGCLD 315 G D Sbjct: 293 LGMGD 297 >gi|295836296|ref|ZP_06823229.1| signal recognition particle protein [Streptomyces sp. SPB74] gi|295825941|gb|EDY44271.2| signal recognition particle protein [Streptomyces sp. SPB74] Length = 513 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 77/267 (28%), Positives = 136/267 (50%), Gaps = 15/267 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + ++++ + ++VS Q+V+ V+E + +L Sbjct: 28 DATAREIRIALLEADVALPVVRAFIKKIKERALGEEVSKALNPAQQVIKIVNEELVGILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + P VI++ G+ G GKTT+ GKL + + G +L A D R A++Q Sbjct: 88 GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGRWLQGQGHSPLLVACDLQRPNAVNQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R + G+ D +A ++ + A+ K+ DV+I+DTAGRL + LM Sbjct: 147 LSVVAERAGVGIYAPQPGNGVGDPVQVAKDSVEYARTKQYDVVIVDTAGRLGIDQELMRQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P +L V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301 + I + F GE +++ + F Sbjct: 261 ALSIAHVTGKQIMFASNGEKLDEFDAF 287 >gi|320527196|ref|ZP_08028382.1| signal recognition particle protein [Solobacterium moorei F0204] gi|320132387|gb|EFW24931.1| signal recognition particle protein [Solobacterium moorei F0204] Length = 471 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 85/305 (27%), Positives = 148/305 (48%), Gaps = 17/305 (5%) Query: 21 FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + + ++ L D E E+ L+ +D+ + ++ ++E+ TK Sbjct: 3 FDSLSDRLNKALRNVAGKGTLTDNNMEDMLKEVRLALLEADVNYRIVKEFLDEIRTKSRG 62 Query: 77 KDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++V SV Q+++ V + I ++L N+ I++VG+ G GKTT + K+ Sbjct: 63 EEVLQSVEPGQQLVKIVHDQIIELLGTEETGLNF-VEDGITKIMLVGLQGTGKTTSVAKI 121 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 ++ + KV+L A D R AAIDQL+ + + A + + A+ Sbjct: 122 ARICKEKFNKKVLLIAADVIRPAAIDQLQTLGKEIDTEVFTLGTETPAVETVRQGMEYAE 181 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 D + IDTAGRLH + LM + + ++ P+ +L +DA TGQ+ + + Sbjct: 182 KNGFDTVFIDTAGRLHIDEALMNELKDINELVH------PNDILLTVDAMTGQDIVNVAQ 235 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F TGL++TK DG +RGGG++ + +P+ F+G GE I D++ F + I Sbjct: 236 AFKDALPLTGLVVTKFDGDSRGGGVLSVKKITGVPIKFVGEGEKIEDMDIFHPDRMADRI 295 Query: 311 TGCLD 315 G D Sbjct: 296 LGMGD 300 >gi|55379689|ref|YP_137539.1| signal recognition 54 kDa protein [Haloarcula marismortui ATCC 43049] gi|74552458|sp|Q5UY20|SRP54_HALMA RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|55232414|gb|AAV47833.1| signal recognition 54 kDa protein [Haloarcula marismortui ATCC 43049] Length = 469 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 83/281 (29%), Positives = 137/281 (48%), Gaps = 11/281 (3%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHK 94 +S ++D V+E ++ L+++D+ V + Q + + T+ ++ D V ++++ Sbjct: 23 LSEEDIEDIVKE-IQRSLLQADVDVGLVQDLSNSIETRALDEEPPAGTTPRDWVLRIVYE 81 Query: 95 MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 L+ L + + I++ G+ G GKTT K++ S GL+ + DT R A Sbjct: 82 ELVDLVGE-STELPLEEQTIMLAGLYGSGKTTTAAKMAWWFSTKGLRPAIIQTDTDRPGA 140 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 DQ K A+R DF D +A + + + DV I+DTAGR N L+ Sbjct: 141 YDQSKEMAERAEVDFYGDPDEDDPVKIARDGLEATE--NADVRIVDTAGRDGLNEELIEQ 198 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 I ++ + ++ P L VLDA GQ+A Q F A G G+++TK+DGTA+GGG Sbjct: 199 IERIEQEVQ------PDRDLLVLDAAMGQSAKSQAADFEAAIGIDGVVITKLDGTAKGGG 252 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + V + FLG GE + D+E F F + + G D Sbjct: 253 ALAAVNETDSTIAFLGSGETVKDIERFEPSGFISRLLGMGD 293 >gi|154245411|ref|YP_001416369.1| signal recognition particle protein [Xanthobacter autotrophicus Py2] gi|154159496|gb|ABS66712.1| signal recognition particle protein [Xanthobacter autotrophicus Py2] Length = 513 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 109/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P IL+VG+ G GKTT K++K++++ G KV++A+ DT R AA++QL + Sbjct: 100 PVPILMVGLQGSGKTTSTAKIAKRLTERGKRKVLMASLDTRRPAAMEQLATLGKQVEVAT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G A +A A + A+ DV+++DTAGR+ + LMA + ++ Sbjct: 160 LPIVAGQSAVQIAKRAIEAAKLGGYDVVMLDTAGRVTLDEALMAEVAEVKAA------TG 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH VL V D+ TGQ+A+ + F G TG+++T+ DG RGG + + P+ L Sbjct: 214 PHEVLLVADSLTGQDAVNTAKAFDGRVGLTGIVLTRADGDGRGGAALSMRAVTGKPIKLL 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE ++ LE F + I G D Sbjct: 274 GTGEKMDALEDFDPHRVAGRILGMGD 299 >gi|148284448|ref|YP_001248538.1| signal recognition particle protein [Orientia tsutsugamushi str. Boryong] gi|146739887|emb|CAM79851.1| signal recognition particle protein [Orientia tsutsugamushi str. Boryong] Length = 450 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 78/268 (29%), Positives = 135/268 (50%), Gaps = 15/268 (5%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + V + + ++ K ++V SV Q V+ +S+ + K+L Sbjct: 38 LLEADVSLVVIKDFINNVVEKAKGQEVIRSVTPGQMVIKIISDEMIKVLSSSETEQALRI 97 Query: 108 SHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P V I+++G+ G GKTT KL+ K++ KVM+ + D +R AA +QL+ R Sbjct: 98 EFEPPVNIMMIGLQGSGKTTTTAKLAMKLAKKNKKVMVVSLDIYRPAAREQLETLV-RNH 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKV--DVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + I S+ A +AK + DV+I DTAGRLH + ++ + + ++ Sbjct: 157 ETILSLPIVSNENVFQIIARSTKEAKLLGCDVVIYDTAGRLHIDETMLQELSNIKEII-- 214 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P +L V+D+ GQ ++ F+ +G+++TK+DG +RGG + I Sbjct: 215 ----TPKEILLVVDSLIGQESVNVANQFNQTLNISGVVLTKIDGDSRGGAALSIKYVTGK 270 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITG 312 P+ FLG+GE NDLE F + ++ I G Sbjct: 271 PIKFLGIGEKTNDLEEFHPERIASRILG 298 >gi|257440277|ref|ZP_05616032.1| signal recognition particle protein [Faecalibacterium prausnitzii A2-165] gi|257197311|gb|EEU95595.1| signal recognition particle protein [Faecalibacterium prausnitzii A2-165] Length = 451 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 81/274 (29%), Positives = 136/274 (49%), Gaps = 14/274 (5%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ VA+ ++ + ++V Q+V+ V+E + ++ P Sbjct: 34 EVRMALLEADVNYKVAKDFCAKVSERAMGQEVMESLTPAQQVVKIVNEELVALMGGEEAP 93 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 + +I++ G+ G GKTT KL+K G + ML A D +R AAIDQL++ Sbjct: 94 RLIVKNKGQTIIMLCGLQGNGKTTHAAKLAKYFIKQGRRPMLVACDIYRPAAIDQLQVVG 153 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 + A V + G+ +A +A A+ D++I+DTAGRL + +LM + L Sbjct: 154 GQAGAP-VFTLPGAKPPEIARKALAHARDYGNDIVILDTAGRLQIDEVLM-------QEL 205 Query: 223 KRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 ++ P L V+DA GQ+A+ + F+ G G+I+TK DG RGG + ++ Sbjct: 206 VQIKEAVPVDETLLVVDAMAGQDAVNVAKTFNETVGIDGIILTKTDGDTRGGAALSVLSV 265 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F G GE ++DLE F ++ I G D Sbjct: 266 TGKPIKFQGTGEKLDDLEVFHPSRMASRILGMGD 299 >gi|227432057|ref|ZP_03914071.1| Sec family type I general secretory pathway protein signal recognition particle protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352174|gb|EEJ42386.1| Sec family type I general secretory pathway protein signal recognition particle protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 491 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 79/271 (29%), Positives = 129/271 (47%), Gaps = 17/271 (6%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ +K V + K D+ Q+++ V++ + + + P N Sbjct: 39 LLEADVNYDTVKKFVANVREKASGTDIMEGLNPAQQIVKIVNDELTATMGEEAVPLNKS- 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P +I++ G+ G GKTT + KL+ K+ ++ + +L A D +R AAIDQL+I Sbjct: 98 PKIPTIIMMAGLQGAGKTTTVAKLAYKLKNENNARPLLIAADIYRPAAIDQLEILG--RD 155 Query: 167 ADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 D +G+D + ++A K D + IDTAGRL + LM + + + Sbjct: 156 LDIPVFSMGTDVNPRDIVRAGLEKAAENKNDYVFIDTAGRLQIDEELMQELKDIAEIAD- 214 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P +L +DA TGQNA + F A TG+++TK+DG RGG + I Sbjct: 215 -----PDEILLTVDAMTGQNAAETAKGFSASLDLTGVVLTKLDGDTRGGAALSIRDVTGK 269 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE DL+ F ++ I G D Sbjct: 270 PIKFVGQGEKPTDLDVFYPDRMASRILGMGD 300 >gi|134891|sp|P06625|SRPR_CANFA RecName: Full=Signal recognition particle receptor subunit alpha; Short=SR-alpha; AltName: Full=Docking protein alpha; Short=DP-alpha gi|997|emb|CAA26945.1| signal recognition particle receptor [Canis sp.] gi|224778|prf||1112224A signal recognition particle receptor Length = 638 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 91/323 (28%), Positives = 152/323 (47%), Gaps = 42/323 (13%) Query: 18 TKGFASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 TKG + +G+ S R D + V +++ D LI ++ +A ++ E + K Sbjct: 313 TKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEG 372 Query: 77 KDV-SVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKT 125 K + + V V + + + L+ + +P + RP+V+ GVNGVGK+ Sbjct: 373 KVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKS 432 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-------------DFVCS 172 T + K+S + + G V++AA DTFR+ A++ ++ R SA Sbjct: 433 TNLAKISFWLLENGFSVLIAACDTFRAGAVEHVRTHTRRLSALHPPEKHAGPTMVQLFEK 492 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 G DAA +A EA A+ + DV+++DTAGR+ +N+ LM + K+I V + P Sbjct: 493 GYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDL 546 Query: 233 VLQVLDATTGQNALRQVEMF------HAVAGTT----GLIMTKMDG-TARGGGLIPIVVT 281 VL V +A G A+ Q+ F H++A T G+++TK D + G I + Sbjct: 547 VLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYI 606 Query: 282 HKIPVYFLGVGEGINDLEPFVAK 304 P+ F+G G+ DL AK Sbjct: 607 TSKPIVFVGTGQTYCDLRSLNAK 629 >gi|297156880|gb|ADI06592.1| signal recognition particle protein [Streptomyces bingchenggensis BCW-1] Length = 518 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 82/284 (28%), Positives = 140/284 (49%), Gaps = 21/284 (7%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + ++++ + +VS Q+V+ V+E + +L Sbjct: 28 DATAREIRIALLEADVALPVVRAFIKQIKERATGAEVSQALNPAQQVIKIVNEELVGILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + P VI++ G+ G GKTT+ GKL + + G +L A D R A++Q Sbjct: 88 GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGRWLKGQGHAPLLVACDLQRPNAVNQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM-- 212 L + A+R E G+ D +A ++ + A+ K+ DV+I+DTAGRL + LM Sbjct: 147 LSVVAERAGVAVFAPEPGNGVGDPVKVAEDSIEFAKTKQHDVVIVDTAGRLGIDQELMQQ 206 Query: 213 -AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 A I +R P VL V+D+ GQ+A+ E F G G++++K+DG AR Sbjct: 207 AADIRDAVR---------PDEVLFVVDSMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDAR 257 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 GG + I + F GE ++D + F ++ I G D Sbjct: 258 GGAALSIAHVTGRQIMFASNGEKLDDFDAFHPDRMASRILGMGD 301 >gi|229495294|ref|ZP_04389029.1| signal recognition particle protein [Porphyromonas endodontalis ATCC 35406] gi|229317737|gb|EEN83635.1| signal recognition particle protein [Porphyromonas endodontalis ATCC 35406] Length = 442 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 87/303 (28%), Positives = 147/303 (48%), Gaps = 14/303 (4%) Query: 21 FASTSLKLKEGITDIISSRRLDD-GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L+ ++ R+ + V E L+D+ L+ +D+ VA+K + + Sbjct: 2 FENLSERLERSFKNLKGEGRITEINVAETLKDVRRALLDADVNYNVAKKFTDTVKETALG 61 Query: 77 KDV-SVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 ++V + R + +++H L L + P V+L+ G+ G GKTT GKL+K Sbjct: 62 RNVLTAVRPSEMMVKIVHDELARLMGGEAVELRLQGSPAVVLMSGLQGSGKTTFSGKLAK 121 Query: 134 KMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 + K +L A D +R AAIDQLK+ ++ + E +A A+ Sbjct: 122 LLKTQRHKNPLLVACDVYRPAAIDQLKVLGEQLNIPVYAEEDNKKPVQIAERGITYAREH 181 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 DV+I+DTAGRL + +M I + + P VL V+D+ TGQ+A+ + F Sbjct: 182 GHDVVIVDTAGRLAVDEEMMQEIAAIKAAIN------PDEVLFVVDSMTGQDAVNTAKEF 235 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + G+++TK+DG RGG + I P+ F+G GEG++ L+ F + + I G Sbjct: 236 NDRLDFGGVVLTKLDGDTRGGAALSIRTVVTKPIKFVGTGEGMDALDVFHPERMADRILG 295 Query: 313 CLD 315 D Sbjct: 296 MGD 298 >gi|12230633|sp|P70722|SRP54_ACIAM RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|4165432|emb|CAA69991.1| fifty-four homologue of SRP54 [Acidianus ambivalens] Length = 451 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 94/322 (29%), Positives = 151/322 (46%), Gaps = 38/322 (11%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV----AVA 63 S+ L +R + F + S + + D I +EL+ LI +D+ V ++ Sbjct: 1 SKLLDNLRDAVRKFLTGSSSYDKAVEDFI----------KELQKSLISADVNVKLVFSLT 50 Query: 64 QKIVEELLTKRYAKDVSVQ----RVLYDVSELIHKMLMPLSKPFNWDFSHR------PHV 113 KI E L ++ + + +++YD LS F D + P+V Sbjct: 51 NKIKERLKNEKPPTYIERREWFIKIVYD----------ELSNLFGGDKEPKVIPDKIPYV 100 Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 I++VGV G GKTT GKL+ G KV L D +R AA++QL+ + Sbjct: 101 IMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEP 160 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 DA +A ++ ++K++++I+DTAGR H A + +M + + + P V Sbjct: 161 GEKDAVGIAKRGVEKFLSEKMEIIIVDTAGR-HGYGEEAALLEEMKNIYEAI---KPDEV 216 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 V+DA+ GQ A F+ + +I+TKMDGTA+GGG + V + F+G GE Sbjct: 217 TLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAVAATGATIKFIGTGE 276 Query: 294 GINDLEPFVAKDFSAVITGCLD 315 I++LE F + F A I G D Sbjct: 277 KIDELEVFNPRRFVARILGMGD 298 >gi|304383803|ref|ZP_07366261.1| signal recognition particle protein [Prevotella marshii DSM 16973] gi|304335059|gb|EFM01331.1| signal recognition particle protein [Prevotella marshii DSM 16973] Length = 452 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 108/211 (51%), Gaps = 7/211 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADR 164 + +RP +IL+ G+ G GKTT GKL+ + + +L A D +R AAI+QL++ + Sbjct: 94 NLKNRPAIILMSGLQGSGKTTFSGKLANLLKTKQHRHPLLVACDVYRPAAIEQLRVVGTQ 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + D +A A + A+AK D ++IDTAGRL + +M+ I + + + Sbjct: 154 IGVEVYSEPDSKDVVEIAQHAIQHAKAKSYDTVVIDTAGRLAVDEEMMSEIATLKKAV-- 211 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P L V+DA TGQ+A+ + F+ G+++TK+DG RGG + I Sbjct: 212 ----TPDETLFVVDAMTGQDAVNTAKEFNDRLNFDGVVLTKLDGDTRGGAALSIRTVVTK 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + ++ F + I G D Sbjct: 268 PIKFIGTGEKMEAIDVFHPDRMADRILGMGD 298 >gi|193662214|ref|XP_001947029.1| PREDICTED: signal recognition particle receptor subunit alpha homolog [Acyrthosiphon pisum] Length = 627 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 147/297 (49%), Gaps = 41/297 (13%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDV-SELIHKMLMPLS 100 D V E+L++ L+ ++ + +A K+ + + +K K + S + V V + +I ++ LS Sbjct: 329 DPVLEKLKEHLVAKNVAIEIATKLCDSVSSKLEGKVLGSFESVASTVKNTMIESLVQILS 388 Query: 101 KPFNWDF---------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 D + +P+V+ GVNGVGK+T + K+ + + L+V++AA DTFR Sbjct: 389 PKRRIDILRDAMMAKKNEKPYVMAFCGVNGVGKSTNLAKICFWLIENNLRVLIAACDTFR 448 Query: 152 SAAIDQLKIWA-------------DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 + A++QL+ D+ G DAA +A EA A+ K D+++ Sbjct: 449 AGAVEQLRTHTKHLNALHPAKKHNDQQMVQLYEKGYGKDAAGIAMEAINHAKEAKYDIVL 508 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAG 257 +DTAGR+ +N LM + K+I+V + P VL V +A G A+ Q+ F+ A+A Sbjct: 509 VDTAGRMQDNEPLMRALTKLIKV------NEPDMVLFVGEALVGNEAVDQLVKFNQALAD 562 Query: 258 TT---------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 + G+++TK D + G I + P+ F+G G+ DL+ AK Sbjct: 563 YSSSVTPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAK 619 >gi|126662097|ref|ZP_01733096.1| signal recognition particle protein [Flavobacteria bacterium BAL38] gi|126625476|gb|EAZ96165.1| signal recognition particle protein [Flavobacteria bacterium BAL38] Length = 448 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 108/211 (51%), Gaps = 7/211 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 + S P VIL+ G+ G GKTT GKL+ + + K +L A D +R AAI+QL + + Sbjct: 94 NLSGNPTVILMSGLQGSGKTTFSGKLANFLKTKKNKKPLLVACDIYRPAAINQLHVVGGQ 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + + +A A K A+A +V+I+DTAGRL + +M I ++ + ++ Sbjct: 154 IGVEVYSEPENKNPVEIAQNAIKHAKANGFNVVIVDTAGRLAVDEQMMNEIAEVHKAIQ- 212 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P L V+DA TGQ+A+ + F+ G+I+TK+DG RGG I I Sbjct: 213 -----PEETLFVVDAMTGQDAVNTAKAFNDRLNFDGVILTKLDGDTRGGAAISIKSVVNK 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + ++ F + I G D Sbjct: 268 PIKFIGTGEKMEAIDVFYPNRMADRILGMGD 298 >gi|302835417|ref|XP_002949270.1| hypothetical protein VOLCADRAFT_74111 [Volvox carteri f. nagariensis] gi|300265572|gb|EFJ49763.1| hypothetical protein VOLCADRAFT_74111 [Volvox carteri f. nagariensis] Length = 505 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 64/201 (31%), Positives = 100/201 (49%), Gaps = 6/201 (2%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 H ++ VG+ G GKTT K + G K L DT+R+ A DQLK A + F Sbjct: 106 HTVMFVGLQGSGKTTTCTKYAYFYKKKGWKPALVCADTYRAGAFDQLKQNATKAQIPFYG 165 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 S +D AA+A + + + D++I+DT+GR + L + ++ + +P Sbjct: 166 SYKETDPAAIAQQGVLRFKEDGRDLIIVDTSGRHKQEAALFEEMKQVAAAV------SPD 219 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 ++ V+D + GQ A Q + F +I+TK+DG A+GGG + V K P+ FLG Sbjct: 220 LIIFVMDGSIGQAAFDQAKAFKEAVEVGAVIITKLDGHAKGGGALSAVAATKSPIIFLGT 279 Query: 292 GEGINDLEPFVAKDFSAVITG 312 GE ++ E F K F + G Sbjct: 280 GEHMDQFESFETKRFVQRLLG 300 >gi|163839822|ref|YP_001624227.1| signal recognition particle protein [Renibacterium salmoninarum ATCC 33209] gi|162953298|gb|ABY22813.1| signal recognition particle protein [Renibacterium salmoninarum ATCC 33209] Length = 522 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/217 (34%), Positives = 111/217 (51%), Gaps = 18/217 (8%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF- 169 P VI++ G+ G GKTT+ GKLSK + G +L A D R A+ QL++ +R Sbjct: 100 PTVIMLAGLQGAGKTTLAGKLSKWLKGQGHSPLLVAADLQRPNAVKQLQVNGERAGVRVF 159 Query: 170 -----VCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 V SE S D A+A +A++K DV+I+DTAGRL ++ LM + Sbjct: 160 APHPGVSSEFESATGDPVAVAQAGLAEARSKLHDVVIVDTAGRLGVDAELMQQAADIRAA 219 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 + +P VL V+DA GQ+A+ + F TG++++K+DG ARGG + + Sbjct: 220 I------SPDEVLFVIDAMIGQDAVATAQAFDEGVNFTGIVLSKLDGDARGGAALSVATV 273 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 PV F GE ++D E F ++ I LD G+ Sbjct: 274 TGKPVMFASTGESLDDFEVFHPDRMASRI---LDMGD 307 >gi|313608187|gb|EFR84220.1| signal recognition particle protein [Listeria monocytogenes FSL F2-208] Length = 450 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 110/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K +L A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ + +D +IIDTAGRLH + LM + ++ + Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEI------ 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 AP +L V+D+ TGQ+A+ + F+ TG+++TK+DG RGG + I P+ Sbjct: 213 AAPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ GE + LE F ++ I G D Sbjct: 273 FIATGEKMEALETFHPDRMASRILGMGD 300 >gi|315303701|ref|ZP_07874216.1| signal recognition particle protein [Listeria ivanovii FSL F6-596] gi|313627928|gb|EFR96546.1| signal recognition particle protein [Listeria ivanovii FSL F6-596] Length = 450 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 109/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K +L A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A ++A+ +D +IIDTAGRLH + LM + ++ + Sbjct: 159 PVFSLGDQVSPVEIAKQAIEKAKEDHLDYVIIDTAGRLHIDETLMDELKQVKEI------ 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ TGQ+A+ E F+ TG+++TK+DG RGG + I P+ Sbjct: 213 ATPTEILLVVDSMTGQDAVNVAESFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ GE + LE F ++ I G D Sbjct: 273 FIATGEKMEALETFHPDRMASRILGMGD 300 >gi|307172333|gb|EFN63821.1| Signal recognition particle receptor subunit alpha-like protein [Camponotus floridanus] Length = 611 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 83/295 (28%), Positives = 146/295 (49%), Gaps = 41/295 (13%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP- 98 V E+L+D LI ++ +AQK+ + + K K D + +++ + ++L P Sbjct: 315 VLEKLKDHLITKNVAADIAQKLCDSVGMKLEGKVLGTFDSVANTIKATLTDALVQILSPK 374 Query: 99 -----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 L S+RP+V+ GVNGVGK+T + K+ + + +V++AA DTFR+ Sbjct: 375 RRIDILRDALEAKKSNRPYVMTFCGVNGVGKSTNLAKICFWLIENNFRVLIAACDTFRAG 434 Query: 154 AIDQLKIWA-------------DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 A++QL+ +++ G DAA +A EA + A+ ++D++++D Sbjct: 435 AVEQLRTHTRHLNALHPPEKHRNQSMVQLYEKGYGKDAAGIAMEAIRFAKDSRIDIVLVD 494 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT 259 TAGR+ +N LM + K+I+V + P VL V +A G A+ Q+ F+ A+A + Sbjct: 495 TAGRMQDNEPLMRALTKLIKV------NEPDLVLFVGEALVGNEAVDQLVKFNQALADYS 548 Query: 260 ---------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 G+++TK D + G I + P+ F+G G+ DL+ AK Sbjct: 549 QSANPHIIDGIVLTKFDTIDDKVGAAITMTYITGQPIVFVGTGQTYTDLKSLNAK 603 >gi|167842001|ref|ZP_02468685.1| signal recognition particle protein [Burkholderia thailandensis MSMB43] Length = 455 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 109/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +IL+ G+ G GKTT +GKL+K + + KV+ + D +R AAI QLK +++ ADF Sbjct: 104 PAIILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 163 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S +A A A+ DVL++DTAGRL + +M I + L+ Sbjct: 164 FPSTPDQKPVDIANAAVDWARRHYHDVLLVDTAGRLGIDEAMMREIAALHAALE------ 217 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA GQ+A+ + F+ TG+++TK+DG +RGG + + P+ F+ Sbjct: 218 PVETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GV E ++ LE F + I G D Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303 >gi|225683542|gb|EEH21826.1| signal recognition particle 54 kDa protein [Paracoccidioides brasiliensis Pb03] Length = 500 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 87/277 (31%), Positives = 135/277 (48%), Gaps = 18/277 (6%) Query: 47 EELEDLLIRSDIGVAVAQKIVEEL--------LTKRYAKDVSVQRVLYDVSELIHKMLMP 98 +E+ L+ +D+ V + Q + + + L K +Q+ ++D +L+ ++ P Sbjct: 3 KEICAALLSADVNVRLVQSLRKSIKSSVQFSSLPPAVNKKRLIQKTVFD--QLV-ALVDP 59 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +PF R +VI+ VG+ G GKTT KL++ G + L DTFR+ A DQL Sbjct: 60 HCEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKLARHYQTRGFRAALVCADTFRAGAFDQL 118 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 K A + + S +D +A E + + ++ D++I+DT+GR + L A + ++ Sbjct: 119 KQNATKAKIPYYGSLTQTDPVVVAAEGVAKFKKERFDIIIVDTSGRHKQEADLFAEMTQI 178 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +K P + VLD T GQ A Q F A A +I+TK DG A GGG I Sbjct: 179 QTAIK------PDQTILVLDGTIGQAAEIQSSAFKATADFGAIIITKTDGAAAGGGAISA 232 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 V P+ FLG GE + DLE F K F + G D Sbjct: 233 VAATHTPIIFLGTGEHMLDLERFAPKPFIQKLLGMGD 269 >gi|221124258|ref|XP_002159557.1| PREDICTED: similar to Signal recognition particle protein 54k CG4659-PA [Hydra magnipapillata] Length = 419 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 107/209 (51%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P VIL+ G+ G GKTT GKL+K + + KV+ +GD +R AAI+QLK + Sbjct: 62 AQPPAVILMSGLQGAGKTTTTGKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTAQAG 121 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 A++ S + + A A+ DVL++DTAGRL + LM+ I + L Sbjct: 122 AEWFPSTPDQNPVDIGRAALDYAKKHFFDVLLVDTAGRLAIDEALMSEIKNLHAALN--- 178 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA GQ+A+ + F TG+I+TK DG +RGG + + P+ Sbjct: 179 ---PVETLFVVDAMQGQDAVNTAKAFKEALPLTGIILTKTDGDSRGGAALSVRQITGAPI 235 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G E ++ LE F A+ + I G D Sbjct: 236 KFAGTSEKLDGLEVFDAERHAGRILGMGD 264 >gi|257124951|ref|YP_003163065.1| signal recognition particle protein [Leptotrichia buccalis C-1013-b] gi|257048890|gb|ACV38074.1| signal recognition particle protein [Leptotrichia buccalis C-1013-b] Length = 446 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 141/289 (48%), Gaps = 21/289 (7%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 ++ + D +RE + L+ +D+ +VA+ V ++ K + V Q+ + V++ Sbjct: 22 LTENNMKDALRE-VRLALLEADVNYSVAKNFVAKIREKALGEQVISGVNPTQQFVKIVND 80 Query: 91 LIHKML----MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + ++L + ++K P ++++ G+ G GKTT GKL+K + G K L Sbjct: 81 ELVEVLGGSNVSIAKA-----DKNPTIVMLSGLQGAGKTTFSGKLAKHLRSKGEKPFLIG 135 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 D +R AA QLK+ ++ + D + + + ++ + +IIDTAGRLH Sbjct: 136 ADVYRPAAKKQLKVLGEQVKVPVFTIDESIDPLEIVKQGIEASKTEHATYVIIDTAGRLH 195 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 + LM + + D P+ +L V+D TGQ+A+ + F+ TG+++TK+ Sbjct: 196 IDEQLMHELQDI------KDCFNPNEILLVVDGMTGQDAVNVAKEFNEQLDITGVVLTKL 249 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 DG RGG + + P+ F+ GE ++D+ PF ++ I G D Sbjct: 250 DGDTRGGAALSVKEVAGKPIKFISEGEKLDDIAPFHPDRLASRILGMGD 298 >gi|302558146|ref|ZP_07310488.1| signal recognition particle protein [Streptomyces griseoflavus Tu4000] gi|302475764|gb|EFL38857.1| signal recognition particle protein [Streptomyces griseoflavus Tu4000] Length = 545 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 81/284 (28%), Positives = 142/284 (50%), Gaps = 18/284 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + ++ + + +VS Q+V+ V++ + +L Sbjct: 57 DATAREIRIALLEADVALPVVRTFIKNVKERALGAEVSKALNPAQQVIKVVNDELITILG 116 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + P VI++ G+ G GKTT+ GKL + + + G +L A D R A++Q Sbjct: 117 GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGRWLKEQGHSPVLVAADLQRPNAVNQ 175 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R E G+ D +A ++ + A+ K D++I+DTAGRL + +M Sbjct: 176 LSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEFARTKVHDIVIVDTAGRLGIDQEMMQQ 235 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P +L V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 236 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 289 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + I P+ F GE ++D + F ++ I LD G+ Sbjct: 290 ALSIRQITGKPIMFASNGEKLDDFDAFHPDRMASRI---LDMGD 330 >gi|221194740|ref|ZP_03567797.1| signal recognition particle protein [Atopobium rimae ATCC 49626] gi|221185644|gb|EEE18034.1| signal recognition particle protein [Atopobium rimae ATCC 49626] Length = 459 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 85/273 (31%), Positives = 129/273 (47%), Gaps = 12/273 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ V + V E+ LT +S Q V+ V + +L Sbjct: 33 EIRMALLEADVNYRVVKNFVARCKEQCLTAEVLDSLSPAQNVVRIVLNELTSLLGSTESK 92 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 + P+VI++VG+ G GKTT KL+ + G +LAA D R AA DQL+ Sbjct: 93 LTLAQNRIPNVIMLVGLQGSGKTTAAAKLAYLLKSEGKHPLLAACDVHRPAAADQLETLG 152 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 + G DA A+A + +QA D++I+DTAGRL + +M + + + Sbjct: 153 SEIEVPVYRGD-GRDAVAIASASIQQAVDNMNDIVIVDTAGRLQIDEEMMQEAVAIKQAV 211 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 K P +L V+DA TGQ+ + V F G+IM+K+DG ARGGG + + Sbjct: 212 K------PDQILMVVDAMTGQDIVNVVTTFAERVDFDGVIMSKLDGDARGGGALSVREVT 265 Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 PV F+ +GE + LE F + I G D Sbjct: 266 GKPVKFVSMGEKPDSLEVFHPDRMAKRILGMGD 298 >gi|56477903|ref|YP_159492.1| signal recognition particle protein [Aromatoleum aromaticum EbN1] gi|56313946|emb|CAI08591.1| Signal recognition particle protein [Aromatoleum aromaticum EbN1] Length = 452 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 109/209 (52%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTS 166 + P V+L+ G+ G GKTT GKL K + + K +LA + D +R AAI+QLK + + Sbjct: 97 TQPPAVVLMAGLQGAGKTTTTGKLGKLLHERMKKKVLAVSADVYRPAAIEQLKAVSAQAG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 DF S +A A A+ DV+++DTAGRL ++ +M I + K Sbjct: 157 IDFFPSTPDQKPVDIALAAIDHARRHYYDVVLLDTAGRLAIDAAMMDEIKALHAAAK--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA GQ+A+ F+ TG+++TK+DG ARGG + + P+ Sbjct: 214 ---PIETLFVVDAMLGQDAVNTARAFNEALPLTGVVLTKLDGDARGGAALSVRHVTGKPL 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F GVGE ++ LE F + ++ I G D Sbjct: 271 KFAGVGEKLSGLEEFHPERMASRILGMGD 299 >gi|71030694|ref|XP_764989.1| signal recognition particle receptor subunit alpha [Theileria parva strain Muguga] gi|68351945|gb|EAN32706.1| signal recognition particle receptor alpha subunit, putative [Theileria parva] Length = 579 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 107/198 (54%), Gaps = 15/198 (7%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 + I+ +GVNGVGK+T + K++ + G KV++ A DTFRS A++QLK Sbjct: 378 YSIVFLGVNGVGKSTSLAKVAYLLKSNGFKVLVVACDTFRSGAVEQLKTHTTNLGLHLFE 437 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 G D A +A E K A + DV++IDTAGR+ +N LMA + K+I V + P+ Sbjct: 438 RGYGKDPAQIAKEGIKHAVNNQFDVVLIDTAGRMQDNEPLMAALTKLIVV------NNPN 491 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGT------TGLIMTKMDGT--ARGGGLIPIVVTHK 283 ++ V +A G +A+ Q++ F+ G L++TK D G L + +T K Sbjct: 492 LIIFVGEALVGNDAVDQLKKFNLAIGKGTDRTIDALLLTKFDTVDDKVGAALSMVYITGK 551 Query: 284 IPVYFLGVGEGINDLEPF 301 P+ F+G G+ +DL+P Sbjct: 552 -PILFVGNGQTYSDLQPL 568 >gi|283768302|ref|ZP_06341214.1| signal recognition particle protein [Bulleidia extructa W1219] gi|283104694|gb|EFC06066.1| signal recognition particle protein [Bulleidia extructa W1219] Length = 466 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 103/203 (50%), Gaps = 7/203 (3%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 I++VG+ G GKTT I K++ ++ G K +L A D R AAIDQLK + + Sbjct: 104 IMMVGLQGTGKTTSIAKIANQVQVKQGRKALLIAADVIRPAAIDQLKTLGQEINTEVFSM 163 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 + A + A+ K D + IDTAGRLH + LM + + +++ P Sbjct: 164 GLNVSALETVEKGMAYAKEKNYDTVFIDTAGRLHIDEQLMKELQDINQLVH------PDE 217 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 +L +DA TGQ+ + F TGL++TK DG +RGGG++ + +P+ F+G G Sbjct: 218 ILLTVDAMTGQDIVNVANAFKEALPLTGLVVTKFDGDSRGGGVLSVRKITGVPIKFVGEG 277 Query: 293 EGINDLEPFVAKDFSAVITGCLD 315 E + D++ F + I G D Sbjct: 278 EKVEDMDVFHPDRMADRILGMGD 300 >gi|91787012|ref|YP_547964.1| signal recognition particle subunit FFH/SRP54 (srp54) [Polaromonas sp. JS666] gi|91696237|gb|ABE43066.1| signal recognition particle subunit FFH/SRP54 (srp54) [Polaromonas sp. JS666] Length = 452 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 108/212 (50%), Gaps = 13/212 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P VIL+ G+ G GKTT KL+K + + KV+ +GD +R AAI+QLK + Sbjct: 97 AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTAQAG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 A++ S +A A A+ DVL++DTAGRL + LM K IR L Sbjct: 157 AEWFPSTPDQKPVDIAKAAIDYARRHFFDVLLVDTAGRLAIDEALM----KEIREL---- 208 Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 HA P L V+DA GQ+A+ + F TG+I+TK DG +RGG + + Sbjct: 209 -HAALNPVETLFVVDAMQGQDAVNTAKAFKEALPLTGIILTKTDGDSRGGAALSVRQITG 267 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F G E I+ LE F A+ + I G D Sbjct: 268 APIKFSGTSEKIDGLEVFDAERHAGRILGMGD 299 >gi|49476256|ref|YP_034297.1| Signal recognition particle protein [Bartonella henselae str. Houston-1] gi|49239064|emb|CAF28367.1| Signal recognition particle protein [Bartonella henselae str. Houston-1] Length = 523 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 84/282 (29%), Positives = 139/282 (49%), Gaps = 29/282 (10%) Query: 48 ELEDLLIRSDIGVAVA--------QKIVEELLTKRYAKDVSVQRVLYDVSELIHKM---- 95 E+ L+ +D+ + VA +K V + K V ++++D EL+H + Sbjct: 33 EIRRALLEADVALDVARSFTDRVREKAVGSAIVKSIKPGQMVVKIVHD--ELVHVLGNEG 90 Query: 96 -LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSA 153 L L+ P P VI+++G+ G GKTT KL+K+++ KV++A+ DT R A Sbjct: 91 VLSDLNAPA-------PVVIMMIGLQGSGKTTTTAKLAKRLTHKHNKKVLMASLDTRRPA 143 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A +QL+ ++ + G +A A + A+ DVL++DTAGR H + LM Sbjct: 144 AQEQLRQLGEQAKLASLPIIAGQSPVDIATRAVQAAKLSGYDVLLLDTAGRNHIDEALML 203 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + ++ + PH ++ V D+ TGQ+A+ F G TG+I+T+MD RGG Sbjct: 204 ELVEIKACCR------PHEIMLVADSLTGQDAVHLARSFDERVGITGIILTRMDSDGRGG 257 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ +G+GE I+DLE F + I G D Sbjct: 258 AALSMRAVTGKPIKAIGIGEKIDDLEEFHPTRIADRILGMGD 299 >gi|222153046|ref|YP_002562223.1| signal recognition particle protein [Streptococcus uberis 0140J] gi|222113859|emb|CAR41999.1| signal recognition particle protein [Streptococcus uberis 0140J] Length = 521 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + + Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPV 160 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 ++G+D +A + + + A+ + D ++IDTAGRL + LMA + R +K L Sbjct: 161 F--DMGTDHSAVEIVTKGLELARDNRNDYVLIDTAGRLQIDDKLMAEL----RDIKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+D+ GQ A F+ TG+++TK+DG RGG + + P+ Sbjct: 213 ANPNEILLVVDSMIGQEAANVAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|262202018|ref|YP_003273226.1| signal recognition particle protein [Gordonia bronchialis DSM 43247] gi|262085365|gb|ACY21333.1| signal recognition particle protein [Gordonia bronchialis DSM 43247] Length = 517 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 92/317 (29%), Positives = 144/317 (45%), Gaps = 29/317 (9%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + D+ RL D E+ L+ +D+ + V + + + + Sbjct: 2 FDSLSDRLTGALKDLRGKGRLSDADIDRTCREIRLALLEADVSLPVVRAFIARIKDRAKG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L ++ + + P VI++ G+ G GKTT+ GKL Sbjct: 62 AEVSAALNPAQQVVKIVNEELVGILGGETRRVTYAKTP-PTVIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------------DA 178 + G ML A D R A+ QL+I +R G+ D Sbjct: 121 GHWLQQQGHTPMLVACDLQRPGAVSQLQIVGERAGVPVFAPHPGTSVGGEGVLGVSSGDP 180 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 A+A +A+ + DV+IIDTAGRL + LM IR R P VL V+D Sbjct: 181 VAVAQGGVDEARRQHYDVVIIDTAGRLGIDEELMRQAAD-IREATR-----PDEVLFVVD 234 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A GQ+A+ + F G TG+++TK+DG ARGG + + P+ F GE + D Sbjct: 235 AMIGQDAVTTAQAFQDGVGFTGVVLTKLDGDARGGAALSVREVTGRPIMFASSGEKLEDF 294 Query: 299 EPFVAKDFSAVITGCLD 315 + F ++ I G D Sbjct: 295 DVFHPDRMASRILGMGD 311 >gi|302345690|ref|YP_003814043.1| signal recognition particle protein [Prevotella melaninogenica ATCC 25845] gi|302150218|gb|ADK96480.1| signal recognition particle protein [Prevotella melaninogenica ATCC 25845] Length = 450 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 68/199 (34%), Positives = 105/199 (52%), Gaps = 9/199 (4%) Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWAD 163 + S RP +IL+ G+ G GKTT GKL+ + K +L A D +R AAIDQLK+ + Sbjct: 93 LNLSGRPSIILMSGLQGSGKTTFSGKLANMLKTKEHKNPLLVACDVYRPAAIDQLKVVGE 152 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + + +A A +A+AK DV+IIDTAGRL + +M+ ++ Sbjct: 153 QVGVAVYSEPENKNVNEIADHALAEAKAKGHDVVIIDTAGRLAVDE-------EMMNEIE 205 Query: 224 RLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 L H P L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + I Sbjct: 206 SLKNHVHPDETLFVVDSMTGQDAVNTAKEFNDRLDFNGVVLTKLDGDTRGGAALSIRTVV 265 Query: 283 KIPVYFLGVGEGINDLEPF 301 P+ F+G GE + ++ F Sbjct: 266 TKPIKFIGTGEKMEAIDVF 284 >gi|226287163|gb|EEH42676.1| signal recognition particle 54 kDa protein [Paracoccidioides brasiliensis Pb18] Length = 530 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 116/226 (51%), Gaps = 10/226 (4%) Query: 81 VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140 +Q+ ++D +L+ ++ P +PF R +VI+ VG+ G GKTT KL++ G Sbjct: 75 IQKTVFD--QLV-ALVDPHCEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKLARHYQTRGF 130 Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 + L DTFR+ A DQLK A + + S +D +A E + + ++ D++I+D Sbjct: 131 RAALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPVVVAAEGVAKFKKERFDIIIVD 190 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 T+GR + L A + ++ +K P + VLD T GQ A Q F A A Sbjct: 191 TSGRHKQEADLFAEMTQIQTAIK------PDQTILVLDGTIGQAAEIQSSAFKATADFGA 244 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +I+TK DG A GGG I V P+ FLG GE + DLE F K F Sbjct: 245 IIITKTDGAAAGGGAISAVAATHTPIIFLGTGEHMLDLERFAPKPF 290 >gi|313231336|emb|CBY08451.1| unnamed protein product [Oikopleura dioica] Length = 587 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 141/290 (48%), Gaps = 34/290 (11%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYD-VSELIHKMLM 97 D + ++ +D LI ++ +A K++ + K + + S+++ +++ + E + ++L Sbjct: 296 DPILQKYKDNLISKNVASEIATKLISAVKNKLVGQTIGTFSSIKKAVFNGLEESLVQILT 355 Query: 98 P------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 P L + RP+ I GVNGVGK+T + K+ + + G ++M+AA DTFR Sbjct: 356 PRRRVDILRDVLHAKGEGRPYSITFCGVNGVGKSTNLAKICFWLVENGFRIMIAACDTFR 415 Query: 152 SAAIDQLKIWADR------TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 + A++QLK R S G D A +A A A+ + DV +IDTAGR+ Sbjct: 416 AGAVEQLKTHVHRINGVHADSVKLFEQGYGKDPATIAMHAISAARDQGYDVCLIDTAGRM 475 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF------HAVAGTT 259 +N LM + K+I + + P +VL V +A G +A+ Q+ F H+ + Sbjct: 476 QDNEPLMRALAKLIAI------NRPDAVLFVGEALVGNDAIDQLTKFNKSLANHSQSNNP 529 Query: 260 ----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 G++++K D + G I + T P+ F+G G+ DL K Sbjct: 530 RLIDGIVLSKFDTIDDKVGAAISMTYTTGQPIVFIGTGQTYKDLNSLNPK 579 >gi|319409414|emb|CBI83060.1| signal recognition particle protein [Bartonella schoenbuchensis R1] Length = 520 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 110/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI+++G+ G GKTT KL+K+++D KV++A+ DT R AA +QL+ ++ Sbjct: 100 PVVIMLIGLQGSGKTTTTAKLAKRLTDKHNKKVLMASLDTRRPAAQEQLRQLGEQAQLAS 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G A + A + A+ DVL++DTAGR H + LM + + I+ L Sbjct: 160 LPIISGQSAVDITARAVQAAKLGAYDVLLLDTAGRNHLDDALMIELAE-IKALS-----L 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH ++ V D+ TGQ+A+ F G TG+I+T+MD RGG + + P+ + Sbjct: 214 PHEIMLVADSLTGQDAVHLARSFDERVGLTGIILTRMDSDGRGGAALSMRAVTGKPIKAI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE I+ LE F + I G D Sbjct: 274 GVGEKIDALEEFHPHRIANRILGMGD 299 >gi|145593852|ref|YP_001158149.1| signal recognition particle protein [Salinispora tropica CNB-440] gi|145303189|gb|ABP53771.1| signal recognition particle subunit FFH/SRP54 (srp54) [Salinispora tropica CNB-440] Length = 514 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/281 (28%), Positives = 136/281 (48%), Gaps = 15/281 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + + + + +VS Q+++ V+E + +L Sbjct: 28 DATAREIRLALLEADVALPVVKGFIARVKERARGAEVSQALNPAQQIVKIVNEELVNVLG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ P VI++ G+ G GKTT+ GKL+ + G + +L A D R A+ Q Sbjct: 88 GEARRLQL-AKQPPTVIMLAGLQGSGKTTLAGKLASWLRGQGHQPLLVAADLQRPNAVGQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L++ R + E G+ D +A + + A+ D++I+DTAGRL ++ +M Sbjct: 147 LQVLGGRAGVEVYSPEPGNGVGDPVQVARASIEHARRAARDIVIVDTAGRLGIDAEMMQQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D P V+ V+DA GQ+A+R E F G TG++++K+DG ARGG Sbjct: 207 AAD-IR-----DAVNPDEVIFVIDAMVGQDAVRTAEAFRDGVGITGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ F GE + D + F ++ I G D Sbjct: 261 ALSVREVTGQPILFASTGEKLEDFDVFHPDRMASRILGMGD 301 >gi|68072789|ref|XP_678308.1| signal recognition particle 54 kDa protein [Plasmodium berghei strain ANKA] gi|56498733|emb|CAH96838.1| signal recognition particle 54 kDa protein, putative [Plasmodium berghei] Length = 500 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 88/285 (30%), Positives = 135/285 (47%), Gaps = 20/285 (7%) Query: 42 DDGVREELEDLLIRS----DIGVAVAQKIVEELLTKRYAKDVSV-----QRVL--YDVSE 90 DD + EE +IR+ DI V + K ++ + K K+ + +R++ Y V E Sbjct: 24 DDNIIEECLKEIIRALILADINV-IYLKDIKSNIKKNIEKNAAAYGNNKKRLVQKYVVEE 82 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 LI K+L + + R +VIL VG+ G GKTT K + G K L DTF Sbjct: 83 LI-KLLEGKKESYVPKKGDR-NVILFVGLQGSGKTTTCTKYAHYYQKKGFKTALICADTF 140 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R+ A DQLK A + F S D +A + K D++I+D++GR + Sbjct: 141 RAGAFDQLKQNAAKVKIPFYGSYSEVDPVKIATDGVNAFLKDKYDLIIVDSSGRHKQEND 200 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 L + ++ +K P ++ V+D+ GQ+ Q F +I+TK+DG A Sbjct: 201 LFEEMKQVESSIK------PEEIVFVIDSHIGQSCHDQAMAFKNSVKVGSIIITKIDGHA 254 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +GGG + V P+ F+G GE +ND E F AK F + + G D Sbjct: 255 KGGGALSAVSAIGCPITFIGTGEHVNDFEKFEAKSFVSRLLGLGD 299 >gi|209965489|ref|YP_002298404.1| signal recognition particle protein [Rhodospirillum centenum SW] gi|209958955|gb|ACI99591.1| signal recognition particle protein [Rhodospirillum centenum SW] Length = 452 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 123/233 (52%), Gaps = 12/233 (5%) Query: 88 VSELIHKMLMPL----SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKV 142 V +++H L+ L S+ N + P +L++G+ G GKTT K++ ++ + KV Sbjct: 74 VIKIVHDHLVELLGETSEEINLSATP-PVPVLMLGLQGSGKTTTSAKIALRLKTREKKKV 132 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +LA+ DT R AA +QLK+ AD+ + G +A A + + + DV+++DTA Sbjct: 133 LLASLDTRRPAAQEQLKVLADQVGVASLPIIPGQTPVQIARRAMETGRLEGFDVVMLDTA 192 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRL + LMA V++ D P L V+DA TGQ+A+ F+ G TG++ Sbjct: 193 GRLAIDDELMA------EVVEIRDATKPVESLLVVDAMTGQDAVTVATNFNERVGITGIV 246 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 MT++DG ARGG + + P+ LGVGE ++ LE F + I G D Sbjct: 247 MTRIDGDARGGAALSMRYVTGKPIKLLGVGEKVDALESFHPDRIAGRILGMGD 299 >gi|108798927|ref|YP_639124.1| signal recognition particle subunit FFH/SRP54 (srp54) [Mycobacterium sp. MCS] gi|119868042|ref|YP_937994.1| signal recognition particle subunit FFH/SRP54 (srp54) [Mycobacterium sp. KMS] gi|126434527|ref|YP_001070218.1| signal recognition particle subunit FFH/SRP54 (srp54) [Mycobacterium sp. JLS] gi|108769346|gb|ABG08068.1| signal recognition particle subunit FFH/SRP54 (srp54) [Mycobacterium sp. MCS] gi|119694131|gb|ABL91204.1| signal recognition particle subunit FFH/SRP54 (srp54) [Mycobacterium sp. KMS] gi|126234327|gb|ABN97727.1| signal recognition particle subunit FFH/SRP54 (srp54) [Mycobacterium sp. JLS] Length = 520 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 95/315 (30%), Positives = 150/315 (47%), Gaps = 27/315 (8%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + + + RL D E+ L+ +D+ + V + V + + Sbjct: 2 FESLSDRLTGALQGLRNKGRLTDADIDATAREIRLALLEADVSLPVVRAFVARIKERAKG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L ++P + + P VI++ G+ G GKTT+ GKL Sbjct: 62 AEVSAALNPAQQVVKIVNEELIGILGGETRPLVFAKTP-PTVIMLAGLQGSGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-----------DAAA 180 +K + G +L A D R A++QL+I +R G+ D A Sbjct: 121 AKWLRGQGHTPLLVACDLQRPGAVNQLQIVGERAGVSVFAPHPGTAPGAPEVKGTADPVA 180 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 +A +A+AK DV+++DTAGRL + LM IR D P VL VLDA Sbjct: 181 VAAAGLAEAKAKHFDVVVVDTAGRLGIDEELM-NQAAAIR-----DAVDPDEVLFVLDAM 234 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQ+A+ E F G TG+++TK+DG ARGG + + +P+ F GE + D + Sbjct: 235 IGQDAVTTAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFASSGEKLEDFDV 294 Query: 301 FVAKDFSAVITGCLD 315 F ++ I G D Sbjct: 295 FHPDRMASRILGMGD 309 >gi|198433605|ref|XP_002122258.1| PREDICTED: similar to mCG7475 [Ciona intestinalis] Length = 639 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 95/339 (28%), Positives = 157/339 (46%), Gaps = 57/339 (16%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q +S I + +G + KE + +++S R D LI ++ +A Sbjct: 312 QANTKKSSGGIFSMFRGLVGSKALTKEALQPVLNSMR----------DHLIGKNVAADIA 361 Query: 64 QKIVEELLTKRYAKDV--------SVQRVLYDVSELIHKMLMP------LSKPFNWDFSH 109 +K+ + + K K V +V++ L D LI L P L + Sbjct: 362 EKMCDSVANKLEGKMVGTFSTIASTVKQSLNDSLVLI---LTPKRRVDILRDVLEAQRAG 418 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK---------- 159 +P+VI GVNGVGK+T + K+ + + G +VM+AA DTFR+ A++QL+ Sbjct: 419 KPYVITFCGVNGVGKSTNLAKICFWLMENGFRVMIAACDTFRAGAVEQLRTHKTRLHTLH 478 Query: 160 ---IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 + R + G DAA +A +A A+ ++ DV+++DTAGR+ +N LM + Sbjct: 479 PPSMHGGRDGVNLFEKGYGKDAAGIAMQAINAAREQRYDVVLVDTAGRMQDNEPLMRSLA 538 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT---------GLIMTKM 266 K+I V ++P VL V +A G A+ Q+ F+ A+A + G+++TK Sbjct: 539 KLITV------NSPDLVLFVGEALVGNEAVDQLVKFNQALADYSNAENPRSIDGIVLTKF 592 Query: 267 DG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 D + G I + T P+ F+G G+ DL AK Sbjct: 593 DTIDDKVGAAISMTYTTGQPIVFVGTGQSYPDLRRLNAK 631 >gi|209554600|ref|YP_002284516.1| signal recognition particle protein [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|209542101|gb|ACI60330.1| signal recognition particle protein [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 448 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 86/276 (31%), Positives = 136/276 (49%), Gaps = 19/276 (6%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV------SELIHKMLMPLSK 101 E+ L+ +D+ + V +K ++ + K V + DV EL+ +L +K Sbjct: 34 EIRITLLDADVNLLVVKKFIKNIKEKTIGLYVEQNQKPADVVLKVIKDELVE-ILGKENK 92 Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKI 160 P N S I++VG+ G GKTT GKL+ + K +L A D +R AAIDQL+ Sbjct: 93 PVNTAKSQLK--IMMVGLQGSGKTTTAGKLANYFRNKYNKKPLLVAADIYRPAAIDQLRT 150 Query: 161 WADRTSADFVCSEIGSDAAALAYE-AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 A + DF E G+ L + A +A + +++I+DTAGRL N LM +++ Sbjct: 151 LAKQVRVDFW--EEGTQRPDLTVKNALHKADENENNLVIVDTAGRLQTNEELMQ---ELV 205 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 V K L+P V V+DA GQ+ + F+ TG+I+TK+D AR G ++ + Sbjct: 206 NVKKTLNPD---EVFLVVDAMAGQDIINVATEFNNWLKLTGIIVTKLDSDARAGAVLSLT 262 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P+ F G GE I ++ F + + I G D Sbjct: 263 SLLNVPIKFTGTGEKIGSIDSFYPERMADRILGLGD 298 >gi|295105977|emb|CBL03520.1| signal recognition particle subunit FFH/SRP54 (srp54) [Gordonibacter pamelaeae 7-10-1-b] Length = 471 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 102/208 (49%), Gaps = 7/208 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P+VI++VG+ G GKTT KL+ ++ +L A D +R AA DQL+ Sbjct: 97 SRIPNVIMLVGLQGSGKTTAAAKLAYRLKQENHSPLLVACDVYRPAAADQLQTLGGEIGV 156 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + G D +A E + A DV+I+DTAGRLH + +M + R +K Sbjct: 157 RVYRGD-GQDPVRIATEGVQDAIDNLRDVVIVDTAGRLHVDDEMMDEAEAIKRAVK---- 211 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+DA TGQ+ + F G+IM+KMDG ARGGG + I P+ Sbjct: 212 --PDQILMVVDAMTGQDVVNVSAAFAERVDFDGVIMSKMDGDARGGGALSIKQVTGKPIK 269 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ GE + LE F + I G D Sbjct: 270 FISSGEKPDSLEEFHPDRMAKRILGMGD 297 >gi|317502602|ref|ZP_07960723.1| signal recognition particle protein [Prevotella salivae DSM 15606] gi|315666283|gb|EFV05829.1| signal recognition particle protein [Prevotella salivae DSM 15606] Length = 449 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 7/192 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +IL+ G+ G GKTT GKL+ + + K +L A D +R AAI QLK+ ++ Sbjct: 99 PAIILMSGLQGSGKTTFSGKLANLLKNKRNKKPLLVACDVYRPAAIQQLKVVGEQIGVPV 158 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 D +A A ++A+AK DV+I+DTAGRL + +M I + L Sbjct: 159 YSEPESKDVITIANNAVREAKAKGYDVVIVDTAGRLAVDEEMMNEIANLKNALH------ 212 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + I P+ F+ Sbjct: 213 PDETLFVVDSMTGQDAVNTAKEFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVTKPIKFV 272 Query: 290 GVGEGINDLEPF 301 G GE + ++ F Sbjct: 273 GTGEKMEAIDAF 284 >gi|49474776|ref|YP_032818.1| Signal recognition particle protein [Bartonella quintana str. Toulouse] gi|49240280|emb|CAF26753.1| Signal recognition particle protein [Bartonella quintana str. Toulouse] Length = 539 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 83/282 (29%), Positives = 140/282 (49%), Gaps = 29/282 (10%) Query: 48 ELEDLLIRSDIGVAVA--------QKIVEELLTKRYAKDVSVQRVLYDVSELIHKM---- 95 E+ L+ +D+ + VA +K V + K V ++++D EL+H + Sbjct: 33 EIRRALLEADVALDVARSFTDRIREKAVGAAIVKSIKPGQMVVKIVHD--ELVHVLGSEG 90 Query: 96 -LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSA 153 L L+ P P VI+++G+ G GKTT KL++++++ KV++A+ DT R A Sbjct: 91 VLSDLNAPA-------PVVIMMIGLQGSGKTTTTAKLARRLTNKHNKKVLMASLDTRRPA 143 Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 A +QL+ ++ + G +A A + A+ DVL++DTAGR H + LM Sbjct: 144 AQEQLRQLGEQAKLASLPIIAGQSPIDIATRAVQAAKLGGYDVLLLDTAGRNHIDEALML 203 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 + ++ D P+ ++ V D+ TGQ+A+ F G TG+I+T+MD RGG Sbjct: 204 ELAQI------KDSSLPYEIMLVADSLTGQDAVHLARSFDERVGITGIILTRMDSDGRGG 257 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ +G+GE I+DLE F + I G D Sbjct: 258 AALSMRAVTGKPIKAIGIGEKIDDLEEFHPSRIADRILGMGD 299 >gi|222087524|ref|YP_002546061.1| signal recognition particle GTP-binding protein [Agrobacterium radiobacter K84] gi|221724972|gb|ACM28128.1| signal recognition particle GTP-binding protein [Agrobacterium radiobacter K84] Length = 521 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT K++ +++ K V++A+ DT R AA +QL+ + D Sbjct: 100 PVVVMMVGLQGSGKTTTSAKIAHRLTSRDRKKVLMASLDTRRPAAQEQLRQLGVQAGIDT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ DV+I+DTAGR H + LM +M + K+ +PH Sbjct: 160 LPVIAGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMV---EMADIKKKSNPH- 215 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 +L V D+ TGQ+A+ F G TGL++T+MDG RGG + + P+ + Sbjct: 216 --EILLVADSLTGQDAVNLARNFDDRVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE + +LE F + + I G D Sbjct: 274 GVGEKMGELEEFHPRRIADRILGMGD 299 >gi|16950584|gb|AAL32278.1| signal recognition particle protein subunit [Arcanobacterium pyogenes] Length = 513 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 127/240 (52%), Gaps = 13/240 (5%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 Q+V+ V++ + ++L ++ NW S P VI++ G+ G GKTT+ GKL + + + G + Sbjct: 72 QQVVKIVNDELIEVLGGQARELNW-ASAAPTVIMLAGLQGAGKTTLAGKLGRWLRENGHR 130 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLI 198 +L A D R A++QL++ ++ + E G+ + +A ++ A+ DV++ Sbjct: 131 PLLVASDLQRPNAVNQLQVVGEQAGVEVFAPEPGNGVGNPVEVARDSILFAKENTFDVVV 190 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +DTAGRL + +MA + IR D P +L VLDA GQ+A+ F G Sbjct: 191 VDTAGRLGVDEEMMA-QARDIR-----DAVNPDEILFVLDAMVGQDAVNTSIAFRDGVGF 244 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 TG++++K+DG ARGG + + PV F GE ++ E F ++ I LD G+ Sbjct: 245 TGVVLSKLDGDARGGAALSVRGVTGQPVLFASTGEKLDAFERFHPDRMASRI---LDMGD 301 >gi|292654301|ref|YP_003534198.1| signal recognition particle 54K protein [Haloferax volcanii DS2] gi|28380161|sp|Q977V2|SRP54_HALVO RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|15277690|gb|AAK93963.1|AF395887_1 signal recognition particle 54 kDa subunit-like protein [Haloferax volcanii] gi|291371443|gb|ADE03670.1| signal recognition particle 54K protein [Haloferax volcanii DS2] Length = 465 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 100/204 (49%), Gaps = 8/204 (3%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 I++ G+ G GKTT K++ S GL+ + DTFR A DQ K +R DF Sbjct: 98 QTIMLAGLQGSGKTTTSAKMAWWFSKKGLRPAVIQTDTFRPGAYDQAKQMCERAEVDFYG 157 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 D +A E + + DV I+DTAGR L+ I ++ V++ P Sbjct: 158 DPDCDDPVQIAREGLEATE--DADVHIVDTAGRHALEDDLIDEIEEIEGVVQ------PD 209 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 L VLDA GQ A Q + F G G+++TK+DGTA+GGG + V + FLG+ Sbjct: 210 LNLLVLDAAIGQGAKEQAQQFDESIGIGGVVITKLDGTAKGGGALTAVNETDSSIAFLGM 269 Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315 GE + D+E F F + + G D Sbjct: 270 GETVQDIERFEPNGFISRLLGMGD 293 >gi|312071485|ref|XP_003138630.1| srpr protein [Loa loa] gi|307766205|gb|EFO25439.1| srpr protein [Loa loa] Length = 662 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 87/299 (29%), Positives = 141/299 (47%), Gaps = 38/299 (12%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP- 102 V +++ + LI ++ A+K+ + + K K V + RV V E + + L+ L P Sbjct: 372 VLDKMRETLIAKNVAAEPAEKLCQSVEVKLEGKVVGTFSRVASIVKESVREALVQLLTPR 431 Query: 103 ---------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 F RP++I+ GVNGVGK+T + K++ +++ G KV++AA DTFR+ Sbjct: 432 RRVDILRDIFEAKREKRPYIIVFCGVNGVGKSTNLAKITFWLNENGHKVLIAAADTFRAG 491 Query: 154 AIDQLKIWA------DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 A++QL+ S G D A L A A + DV+++DTAGR+ + Sbjct: 492 AVEQLRTHTMHLNALHPNSVQLYEQGYGKDPAGLTAAAISIAMERGTDVVMVDTAGRMQD 551 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF------HAVAGTT-- 259 N LM + K+I++ K P VL V +A G A+ Q+ F HA G Sbjct: 552 NEPLMRSLAKLIQLNK------PDLVLFVGEALVGNEAVDQLVKFNQALADHAALGVEGR 605 Query: 260 ---GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 G+++TK D + G I + P+ F+G G+ DL+ D + V+ L Sbjct: 606 LIDGIVLTKFDTVDDKVGAAISMTYITGQPIVFVGTGQTYKDLKSL---DINTVVHSLL 661 >gi|302386490|ref|YP_003822312.1| signal recognition particle protein [Clostridium saccharolyticum WM1] gi|302197118|gb|ADL04689.1| signal recognition particle protein [Clostridium saccharolyticum WM1] Length = 449 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 89/304 (29%), Positives = 152/304 (50%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ + RL + V+ L+++ L+ +D+ V ++ + + + Sbjct: 3 FESLSDKLQNVFKSLRGKGRLSEADVKTALKEVKMALLEADVSFKVVKQFISAVQERAIG 62 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + K++ + + +I++ G+ G GKTT K+ Sbjct: 63 QDVQNSLTPGQMVIKIVNEELVKLMGSETTEIRLKPAGDMTIIMMAGLQGAGKTTTTAKI 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K+ G K +L A D +R AAI QL+I ++ A +A A A Sbjct: 123 AGKLKAKGRKPLLVACDVYRPAAIKQLQINGEKQGVPVFSMGENHKPADIAKAAIAYAAK 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +V+I+DTAGRLH + +M ++I + ++ H ++L V+DA TGQ+A+ M Sbjct: 183 NDQNVVILDTAGRLHIDEDMM---NELIEIKGTVEVH--QTIL-VVDAMTGQDAVNVAGM 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F+ G G+I+TK+DG RGG + I PV ++G+GE ++DLE F ++ I Sbjct: 237 FNDKIGIDGVIITKLDGDTRGGAALSIRAVTGKPVLYVGMGEKLSDLEQFYPDRMASRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|332524016|ref|ZP_08400268.1| signal recognition particle protein [Streptococcus porcinus str. Jelinkova 176] gi|332315280|gb|EGJ28265.1| signal recognition particle protein [Streptococcus porcinus str. Jelinkova 176] Length = 517 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + + Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLIKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPV 160 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 ++G+D +A + + A+ + D ++IDTAGRL + LM + R +K L Sbjct: 161 F--DMGTDHSAVEIVRQGLSLAKENRNDYVLIDTAGRLQIDEKLMTEL----RDVKAL-- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ +L V+D+ GQ A + F+ TG+++TK+DG RGG + + P+ Sbjct: 213 ANPNEILLVVDSMIGQEAANVADEFNKQLEITGVVLTKIDGDTRGGAALSVREITGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE I D+E F S+ I G D Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300 >gi|328957317|ref|YP_004374703.1| signal recognition particle-like (SRP) GTPase [Carnobacterium sp. 17-4] gi|328673641|gb|AEB29687.1| signal recognition particle-like (SRP) GTPase [Carnobacterium sp. 17-4] Length = 475 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 102/206 (49%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT GKL+ + + + +L A D +R AAI QL+ + Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLASYLRKNQNKRPLLIAADIYRPAAIQQLETIGKQLDVPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 +A + ++A+A+ +D ++IDTAGRL + LM + + Sbjct: 161 FSMGDQVSPVEIARQGIEKAKAEHLDFVLIDTAGRLQIDETLMQELSDIKET------SQ 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P + V+DA TGQ A F+ TG+I+TK+DG RGG + I P+ F Sbjct: 215 PTEIFLVVDAMTGQEAANVASSFNEQLDITGVILTKLDGDTRGGAALSIRAVTGKPIKFT 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE ++ LEPF + + I G D Sbjct: 275 GSGEKLDALEPFYPERMANRILGMGD 300 >gi|12044898|ref|NP_072708.1| signal recognition particle protein [Mycoplasma genitalium G37] gi|1351112|sp|P47294|SRP54_MYCGE RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog gi|1045721|gb|AAC71264.1| signal recognition particle protein [Mycoplasma genitalium G37] gi|166078612|gb|ABY79230.1| signal recognition particle protein [synthetic Mycoplasma genitalium JCVI-1.0] Length = 446 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 82/280 (29%), Positives = 138/280 (49%), Gaps = 22/280 (7%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDV--SELIHKMLMP 98 V +E+ L+ +D+ + V + ++ + K + + +Q+ L +ELI+ Sbjct: 31 VLKEIRIALLDADVNLLVVKNFIKAIRDKTVGQTIEPGQDLQKSLLKTIKTELIN----I 86 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQ 157 LS+P RP I++VG+ G GKTT GKL+ + K ML D +R AAI+Q Sbjct: 87 LSQPNQELNEKRPLKIMMVGLQGSGKTTTCGKLAYWLEKKYKQKTMLVGLDIYRPAAIEQ 146 Query: 158 LKIWADRTSADFVC--SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 L+ + +T++ F ++ + A AFK A K +I DTAGRL N LM Sbjct: 147 LETLSQQTNSVFFAQGTQPVAKTTKAALSAFKTA---KCQTIICDTAGRLQTNETLM--- 200 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 +++ V L+P ++ V+D +GQ + + FH TG I++K+D AR G Sbjct: 201 DELVSVKNELNPD---EIIMVVDGLSGQEIINVAQTFHKRLKLTGFIISKLDSDARAGAA 257 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + ++P+ +GV E ++ LE F + + I G D Sbjct: 258 LSLASLLQVPIKLIGVSEKLDGLEQFHPERIANRILGLGD 297 >gi|332290696|ref|YP_004429305.1| signal recognition particle protein [Krokinobacter diaphorus 4H-3-7-5] gi|332168782|gb|AEE18037.1| signal recognition particle protein [Krokinobacter diaphorus 4H-3-7-5] Length = 442 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/214 (33%), Positives = 107/214 (50%), Gaps = 13/214 (6%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAIDQLKIWADR 164 + S P +IL+ G+ G GKTT GKL+ + K +L A D +R AAIDQL + D+ Sbjct: 94 NLSGTPSIILMSGLQGSGKTTFSGKLANFLKTKKTKKPLLVACDVYRPAAIDQLHVVGDQ 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 D + +A + A+A +V+IIDTAGRL + ++M I Sbjct: 154 IKVDVYSDRDEKNPVKIAQDGIAFAKANGHNVVIIDTAGRLAVDEVMMKEIA-------- 205 Query: 225 LDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 D HA P L V+D+ TGQ+A+ + F+ + G+I+TK+DG RGG I I Sbjct: 206 -DVHAAIQPQETLFVVDSMTGQDAVNTAKAFNDILNFDGVILTKLDGDTRGGAAISIKSV 264 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + ++ F + I G D Sbjct: 265 VNKPIKFIGTGEKMEAIDVFYPSRMADRILGMGD 298 >gi|205355551|ref|ZP_03222322.1| signal recognition particle protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205346785|gb|EDZ33417.1| signal recognition particle protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 346 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/197 (35%), Positives = 106/197 (53%), Gaps = 6/197 (3%) Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 + G+ G GKTT KL+ + KV++AA D R AA++QL+ + + E Sbjct: 1 MAGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENE 60 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 D +A EA K+A++ VDVL++DTAGRL + LM +R +K D P + Sbjct: 61 KDPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALM----DELRAVK--DVLNPDEIFY 114 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V DA +GQ+ ++ F+ V G +G+I++K D +GG + I IP+ F+GVGE + Sbjct: 115 VADAMSGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKV 174 Query: 296 NDLEPFVAKDFSAVITG 312 DLE F+ + I G Sbjct: 175 ADLEVFIPDRIVSRIMG 191 >gi|220922839|ref|YP_002498141.1| signal recognition particle protein [Methylobacterium nodulans ORS 2060] gi|219947446|gb|ACL57838.1| signal recognition particle protein [Methylobacterium nodulans ORS 2060] Length = 522 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/260 (30%), Positives = 135/260 (51%), Gaps = 13/260 (5%) Query: 48 ELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ + V +K+ E+ + K V+ Q V+ V++ + ML ++ Sbjct: 33 EVRRALLEADVALEVVRTFTEKVREQAVGATVLKSVTPGQMVVKIVNDQLVAMLGAEAEV 92 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIW 161 + + + P IL+VG+ G GKTT K++K++ S +V+LA+ DT R AA++QL + Sbjct: 93 IDLN-APSPVPILMVGLQGSGKTTTTAKIAKRLTSRDRRRVLLASLDTRRPAAMEQLAVL 151 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 + + + G A +A A + A+ DV+++DTAGR+ + LM + Sbjct: 152 GRQVGVETLPIVAGQSAVQIAKRAMEAARLGGFDVVMLDTAGRITIDEGLMQEAADVKAA 211 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 PH VL V DA TGQ+A+ F G TG+++T+MDG ARGG + + Sbjct: 212 TN------PHEVLLVADALTGQDAVNTARAFDQRLGVTGIVLTRMDGDARGGAALSMRAV 265 Query: 282 HKIPVYFLGVGEGINDLEPF 301 P+ +G GE ++ LE F Sbjct: 266 TGKPIKLVGTGEKVDALEEF 285 >gi|296274038|ref|YP_003656669.1| signal recognition particle protein [Arcobacter nitrofigilis DSM 7299] gi|296098212|gb|ADG94162.1| signal recognition particle protein [Arcobacter nitrofigilis DSM 7299] Length = 451 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/210 (34%), Positives = 110/210 (52%), Gaps = 7/210 (3%) Query: 107 FSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 FS+ P IL+ G+ G GKTT GKL+ + KV++AA D R AA++QLK + Sbjct: 89 FSNTPPTTILMTGLQGSGKTTTTGKLANYLKQRKKKVLIAACDLQRLAAVEQLKQICAQI 148 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 D +I D +A A ++A+ + DVL++DTAGRL ++ LM +GK+ L Sbjct: 149 EVDLYFDDIEKDPVKIAKAAQEKAKKELYDVLLVDTAGRLAIDTELMNQLGKVKDALN-- 206 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P + V D+ TG +A + F G G+I++K DG +GG I + +P Sbjct: 207 ----PDEIFYVADSLTGHDATKTASSFKEQIGIDGVILSKFDGDTKGGVAISLAEQVGVP 262 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F+G GE + DLE F+ + + G D Sbjct: 263 LRFVGTGEKMPDLEVFIPDRIVSRLMGAGD 292 >gi|213404072|ref|XP_002172808.1| signal recognition particle receptor subunit alpha [Schizosaccharomyces japonicus yFS275] gi|212000855|gb|EEB06515.1| signal recognition particle receptor subunit alpha [Schizosaccharomyces japonicus yFS275] Length = 527 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 66/199 (33%), Positives = 107/199 (53%), Gaps = 16/199 (8%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR----- 164 RP+ I ++GVNGVGK+T + +L+ + L++++AA DTFRS AI+QL + Sbjct: 321 RPYTISLIGVNGVGKSTTLSRLAYWLLSNKLRILVAACDTFRSGAIEQLNVHVTNLKKVH 380 Query: 165 -TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + + G DA+ + A + A DV+++DTAGR HN+ LM + K + K Sbjct: 381 GDNIELFAQGYGKDASIVVKNAVQYASQNNFDVILVDTAGRRHNDQRLMGSLEKFTKATK 440 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAV---AGTTGLIMTKMDGTAR-GGGLIPIV 279 LD + QV +A G ++L Q + F A G I++K+D G ++ +V Sbjct: 441 -LDK-----IFQVAEALVGTDSLAQAKHFQASLYHRRLDGFIISKVDAVGELVGVMVGMV 494 Query: 280 VTHKIPVYFLGVGEGINDL 298 T +P+ F+GVG+ +DL Sbjct: 495 YTTHVPIVFVGVGQTYSDL 513 >gi|190346780|gb|EDK38947.2| hypothetical protein PGUG_03045 [Meyerozyma guilliermondii ATCC 6260] Length = 529 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 86/286 (30%), Positives = 140/286 (48%), Gaps = 30/286 (10%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-LSK 101 D V + D I +I A A+ I ++L + K V+++ ++ + K+L P +S Sbjct: 242 DEVSKTFTDQFISKNIAPATAKTITDKLNHELKGKKVTLKDYKRALTVELTKILTPNVST 301 Query: 102 PFNWDF-------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 +D + RP+VI VVGVNGVGK+T + KL+ L V++ A DTFRS A Sbjct: 302 DLLYDVKRNSSTSNSRPYVISVVGVNGVGKSTNLAKLAYWFLQNNLNVLICACDTFRSGA 361 Query: 155 IDQLKIWAD---------RTSADFVCSEI--GSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 ++QLK+ + T D G A A A + A A+ D+++IDTAG Sbjct: 362 VEQLKVHVNNLKRLNTTTNTKIDIFEKGYGGGDHVVATAKSAIEFAGAEGFDIVLIDTAG 421 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG--- 260 R H+N+ LMA + K D P+ ++ V +A G +++ Q F+ G Sbjct: 422 RTHSNAKLMAPLKKF------GDAANPNKIIMVGEALVGTDSVEQAVNFNNAFGNRRSLD 475 Query: 261 -LIMTKMDGTAR-GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 I++K+D G +I +V+ K+P+ F+G G+ D++ K Sbjct: 476 FFIISKVDTVGDLVGSMINMVMATKVPILFVGTGQVYTDIKRLSVK 521 >gi|327328022|gb|EGE69791.1| signal recognition particle protein [Propionibacterium acnes HL103PA1] Length = 528 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/284 (27%), Positives = 143/284 (50%), Gaps = 18/284 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D ++ L+ +D+ ++V ++ V + + + +++S Q+++ V+E + ++L Sbjct: 28 DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + ++++ G+ G GKTT+ GKL++ + G +LAA D R A+ Q Sbjct: 88 GQTRTVRFAKTSS-TIVMLAGLQGAGKTTLAGKLAQWFKEEGHSPLLAACDLQRPNAVTQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L++ +R E G+ D +A +A +A+ K DV+IIDTAGRL ++ +MA Sbjct: 147 LQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAEAEHKLYDVVIIDTAGRLGVDAEMMAQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + P L V+DA GQ+A+ F G G+++TK+DG ARGG Sbjct: 207 AADIKTATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFDGVVLTKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 + I P+ F GEG+ D + F ++ I LD G+ Sbjct: 261 ALSIARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301 >gi|288802708|ref|ZP_06408146.1| signal recognition particle protein [Prevotella melaninogenica D18] gi|288334858|gb|EFC73295.1| signal recognition particle protein [Prevotella melaninogenica D18] Length = 450 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/199 (33%), Positives = 105/199 (52%), Gaps = 9/199 (4%) Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWAD 163 + S RP +IL+ G+ G GKTT GKL+ + K +L A D +R AAIDQLK+ + Sbjct: 93 LNLSGRPSIILMSGLQGSGKTTFSGKLANMLKTKEHKNPLLVACDVYRPAAIDQLKVVGE 152 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + + +A A +A+AK D++IIDTAGRL + +M+ ++ Sbjct: 153 QVGVAVYSEPENKNVNEIADHALAEAKAKGHDIVIIDTAGRLAVDE-------EMMNEIE 205 Query: 224 RLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 L H P L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + I Sbjct: 206 SLKNHVHPDETLFVVDSMTGQDAVNTAKEFNDRLDFNGVVLTKLDGDTRGGAALSIRTVV 265 Query: 283 KIPVYFLGVGEGINDLEPF 301 P+ F+G GE + ++ F Sbjct: 266 TKPIKFIGTGEKMEAIDVF 284 >gi|34540847|ref|NP_905326.1| signal recognition particle protein [Porphyromonas gingivalis W83] gi|34397161|gb|AAQ66225.1| signal recognition particle protein [Porphyromonas gingivalis W83] Length = 445 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 97/313 (30%), Positives = 152/313 (48%), Gaps = 25/313 (7%) Query: 8 SESLSWIRKLTKGFASTSLKLKEG-ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 SE L KL KG EG IT+I + L D VR L D +D+ VA++ Sbjct: 6 SERLDRSFKLLKG---------EGRITEINVAETLKD-VRRALLD----ADVNYVVAKQF 51 Query: 67 VEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PHVILVVGVNGVG 123 + + K ++V + R + +++H L L + D + + P VIL+ G+ G G Sbjct: 52 TDLVKEKAIGQNVLTSVRPGELMVKIVHDELAALMGGHSVDINLKGSPAVILMSGLQGSG 111 Query: 124 KTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 KTT GKL+ + S G + +L A D +R AAI QL I ++ +A Sbjct: 112 KTTFSGKLANMLKSKQGKRPLLVACDVYRPAAIQQLMILGEQLGVPVYSEPDSKKPVEIA 171 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 A +A+ K DV+IIDTAGRL + +M I + ++ P+ VL V+D+ TG Sbjct: 172 RHAIAEAKTKGNDVVIIDTAGRLAIDEEMMREIEAIKAAIQ------PNEVLFVVDSMTG 225 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 Q+A+ + F+ G+++TK+DG RGG + I P+ F+G GE + ++ F Sbjct: 226 QDAVNTAKEFNTRLDFDGVVLTKLDGDTRGGAALSIRSVVNKPIKFVGTGEKMEAIDAFH 285 Query: 303 AKDFSAVITGCLD 315 + + I G D Sbjct: 286 PERMADRILGMGD 298 >gi|157169464|ref|XP_001651530.1| signal recognition particle receptor alpha subunit (sr-alpha) [Aedes aegypti] gi|108878422|gb|EAT42647.1| signal recognition particle receptor alpha subunit (sr-alpha) [Aedes aegypti] Length = 623 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 86/293 (29%), Positives = 140/293 (47%), Gaps = 41/293 (13%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP--- 98 ++L D LI ++ ++ K+ E + K K D V ++E + ++L P Sbjct: 329 DKLRDHLISKNVASDISHKLCESVAVKLEGKVLGTFDTIATTVKNTLTEALVQILSPKRR 388 Query: 99 ---LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 L + RP+V+ GVNGVGK+T + K+ + + L V++AA DTFR+ A+ Sbjct: 389 VDILRDCLEAKKNKRPYVMSFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAV 448 Query: 156 DQLKIW-------------ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +QL+ + R G DAA +A EA + A+ VDV++IDTA Sbjct: 449 EQLRTHMRHLNALHPPEKHSGRNMVQLYEKGYGKDAAGIAMEAIRHAKDSAVDVVLIDTA 508 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259 GR+ +N LM + K+I+V + P VL V +A G A+ Q+ F+ A+A + Sbjct: 509 GRMQDNEPLMRALAKLIKV------NEPDLVLFVGEALVGNEAVDQLVKFNQALADYSSN 562 Query: 260 -------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 G+++TK D + G I + P+ F+G G+ DL+ AK Sbjct: 563 ENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKKLNAK 615 >gi|218261279|ref|ZP_03476151.1| hypothetical protein PRABACTJOHN_01817 [Parabacteroides johnsonii DSM 18315] gi|218224125|gb|EEC96775.1| hypothetical protein PRABACTJOHN_01817 [Parabacteroides johnsonii DSM 18315] Length = 441 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 98/314 (31%), Positives = 154/314 (49%), Gaps = 27/314 (8%) Query: 8 SESLSWIRKLTKGFASTSLKLKEG-ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 SE L KL KG EG IT+I + L D VR+ L D +D+ VA+ Sbjct: 6 SERLDRSFKLLKG---------EGKITEINVAETLKD-VRKALLD----ADVNYKVAKSF 51 Query: 67 VEELLTKRYAKDV--SVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGV 122 + + TK ++V SV+ V +++H L L + D P +IL+ G+ G Sbjct: 52 TDTVKTKALGQNVLTSVKPSQLMV-KIVHDELADLMGGTATDLDLKGSPAIILMSGLQGS 110 Query: 123 GKTTVIGKLSKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT GKL+ + K L AA D +R AAI+QL++ ++ + + Sbjct: 111 GKTTFSGKLANLLKTKKNKKPLLAACDVYRPAAIEQLRVVGEQVGVPVYMELENKNPVEI 170 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 A A ++A+AK DV+I+DTAGRL + +M I + ++ P L V+D+ T Sbjct: 171 AMNAIREARAKGNDVVIVDTAGRLAIDEQMMKEIAAIKSAIQ------PDETLFVVDSMT 224 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQ+A+ + F+ G+++TK+DG RGG + I P+ F+G GE ++ L+ F Sbjct: 225 GQDAVNTAKEFNERLDFDGVVLTKLDGDTRGGAALSIRTVVDKPIKFVGTGEKMDALDIF 284 Query: 302 VAKDFSAVITGCLD 315 + + I G D Sbjct: 285 HPERMADRILGMGD 298 >gi|170580372|ref|XP_001895235.1| signal recognition particle receptor alpha subunit [Brugia malayi] gi|158597920|gb|EDP35937.1| signal recognition particle receptor alpha subunit , putative [Brugia malayi] Length = 669 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 89/299 (29%), Positives = 141/299 (47%), Gaps = 38/299 (12%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP- 102 V +++ + LI ++ A+K+ + + K K V + RV V E + L+ L P Sbjct: 379 VLDKMRETLIAKNVAADPAEKLCQSVEVKLEGKVVGTFSRVASIVKESVRDALVQLLTPK 438 Query: 103 ---------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 RP++I+ GVNGVGK+T + K++ +++ G KV++AA DTFR+ Sbjct: 439 RRVDILRDILEAKREKRPYIIVFCGVNGVGKSTNLAKITFWLNENGHKVLIAAADTFRAG 498 Query: 154 AIDQLKIWADR------TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 A++QL+ S G D A LA A A + DV+++DTAGR+ + Sbjct: 499 AVEQLRTHTKHLNALHPNSVQLYEQGYGKDPAGLAAAAISIAVERGTDVVLVDTAGRMQD 558 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF------HAVAGTT-- 259 N LM + K+I+V + P VL V +A G A+ Q+ F HA G Sbjct: 559 NEPLMRSLAKLIQV------NQPDLVLFVGEALVGNEAVDQLVKFNQSLADHAALGDEGR 612 Query: 260 ---GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 G+++TK D + G I + P+ F+G G+ DL+ A SAV+ L Sbjct: 613 LIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYKDLKSLNA---SAVVHSLL 668 >gi|188995069|ref|YP_001929321.1| signal recognition particle protein [Porphyromonas gingivalis ATCC 33277] gi|188594749|dbj|BAG33724.1| signal recognition particle protein [Porphyromonas gingivalis ATCC 33277] Length = 445 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 97/313 (30%), Positives = 152/313 (48%), Gaps = 25/313 (7%) Query: 8 SESLSWIRKLTKGFASTSLKLKEG-ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 SE L KL KG EG IT+I + L D VR L D +D+ VA++ Sbjct: 6 SERLDRSFKLLKG---------EGRITEINVAETLKD-VRRALLD----ADVNYVVAKQF 51 Query: 67 VEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PHVILVVGVNGVG 123 + + K ++V + R + +++H L L + D + + P VIL+ G+ G G Sbjct: 52 TDLVKEKAIGQNVLTSVRPGELMVKIVHDELAALMGGHSVDINLKGSPAVILMSGLQGSG 111 Query: 124 KTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 KTT GKL+ + S G + +L A D +R AAI QL I ++ +A Sbjct: 112 KTTFSGKLANMLKSKQGKRPLLVACDVYRPAAIQQLMILGEQLGVPVYSEPDSKKPVEIA 171 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 A +A+ K DV+IIDTAGRL + +M I + ++ P+ VL V+D+ TG Sbjct: 172 RHAIAEAKTKGNDVVIIDTAGRLAIDEEMMREIEAIKAAIQ------PNEVLFVVDSMTG 225 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 Q+A+ + F+ G+++TK+DG RGG + I P+ F+G GE + ++ F Sbjct: 226 QDAVNTAKEFNTRLDFDGVVLTKLDGDTRGGAALSIRSIVNKPIKFVGTGEKMEAIDAFH 285 Query: 303 AKDFSAVITGCLD 315 + + I G D Sbjct: 286 PERMADRILGMGD 298 >gi|29840416|ref|NP_829522.1| signal recognition particle [Chlamydophila caviae GPIC] gi|29834765|gb|AAP05400.1| signal recognition particle [Chlamydophila caviae GPIC] Length = 447 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 89/288 (30%), Positives = 141/288 (48%), Gaps = 20/288 (6%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQ----KIVEELLTKRYAKDVSV--QRVLYDVS 89 I+ + + +RE + L+ +D+ V + K+ E++L + K VS Q + Y Sbjct: 22 ITEENISEAIRE-VRLALLDADVNYHVVKSFIAKVKEKILGEEVWKHVSPGQQFIRYLHE 80 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL--KVMLAAG 147 EL LS + S P VIL+ G+ G GKTT KL+ + G KV++ Sbjct: 81 ELTE----LLSGKADLITSGNPGVILLCGLQGTGKTTTCAKLAAYALEEGKAKKVLVVPC 136 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 D R AA+DQL+ +T A+ E G D +A +A A+ D+++IDTAGRLH Sbjct: 137 DLKRFAAVDQLRNLISKTRAELYNPE-GQDPVKVASQALDYAKQHGHDLVLIDTAGRLHV 195 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + +LM + + ++ K + L V++ GQ+A+ + F TG+I++ D Sbjct: 196 DEVLMEELASIQKISKSCER------LFVMNLAMGQDAVTTAKAFDDYLDLTGVIISMTD 249 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G AR G ++ + P+ F G GE I DL PF A+ + I G D Sbjct: 250 GDARAGAVLSMKSLLGKPIKFEGCGEKIQDLRPFNAESMADRILGMGD 297 >gi|326382869|ref|ZP_08204559.1| signal recognition particle protein [Gordonia neofelifaecis NRRL B-59395] gi|326198459|gb|EGD55643.1| signal recognition particle protein [Gordonia neofelifaecis NRRL B-59395] Length = 524 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 92/318 (28%), Positives = 147/318 (46%), Gaps = 30/318 (9%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + D+ RL D E+ L+ +D+ + V + + + + Sbjct: 2 FESLSDRLTGALKDLRGKGRLTDADVDATAREIRLALLEADVSLPVVRTFIARIKERAKG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+++ V+E + +L ++ + P VI++ G+ G GKTT+ GKL Sbjct: 62 AEVSGALNPAQQIVKIVNEELIGILGGETRRVQL-AKNPPTVIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--------------D 177 S + G +L A D R A+ QL+I +R G+ D Sbjct: 121 SAWLVKQGHTPLLVACDLQRPGAVQQLQIVGERAGVPVFAPHPGTSVGGEGALGVDGSAD 180 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 A+A ++A+ K+ DV+IIDTAGRL ++ LM IR D +P VL VL Sbjct: 181 PVAVAQAGVQEAKDKQHDVVIIDTAGRLGIDAELMRQASD-IR-----DATSPDEVLFVL 234 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA GQ+A+ + F TG+++TK+DG ARGG + + P+ F GE + D Sbjct: 235 DAMIGQDAVTTAQAFADGVDFTGVVLTKLDGDARGGAALSVREITGRPIMFASTGEKLED 294 Query: 298 LEPFVAKDFSAVITGCLD 315 + F ++ I G D Sbjct: 295 FDVFHPDRMASRILGMGD 312 >gi|312212847|emb|CBX92929.1| similar to signal recognition particle receptor subunit alpha [Leptosphaeria maculans] Length = 641 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/205 (34%), Positives = 110/205 (53%), Gaps = 20/205 (9%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT-- 165 + RP+V+ +VGVNGVGK+T + K++ + +V++AA DTFRS A++QL++ DR Sbjct: 429 TSRPYVLSIVGVNGVGKSTNLSKIAFFLLQNHHRVLIAAADTFRSGAVEQLRVHVDRLKE 488 Query: 166 -------SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 D G DAA +A +A A+ +V++IDTAGR HN+ LM+ + K Sbjct: 489 LSQREGGQVDLFEKGYGKDAANIAADAVIFAEKNNFNVVLIDTAGRRHNDQRLMSSLEKF 548 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARG-G 273 ++ P +L V +A G +++ Q F+A G G +++K D G Sbjct: 549 GKLAN------PDKILMVGEALVGTDSVAQARNFNASFGAGRSLDGFVISKCDTVGDMVG 602 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDL 298 L+ +V IPV FLG G+ +DL Sbjct: 603 TLVSMVHATGIPVVFLGTGQHYSDL 627 >gi|319952152|ref|YP_004163419.1| signal recognition particle subunit ffh/srp54 (srp54) [Cellulophaga algicola DSM 14237] gi|319420812|gb|ADV47921.1| signal recognition particle subunit FFH/SRP54 (srp54) [Cellulophaga algicola DSM 14237] Length = 445 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 109/211 (51%), Gaps = 7/211 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAIDQLKIWADR 164 + S P VIL+ G+ G GKTT GKL+ + K +L A D +R AA+DQL + ++ Sbjct: 94 NLSGDPSVILMSGLQGSGKTTFSGKLASYLKTKKTKKPLLVACDVYRPAAVDQLLVVGEQ 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + +D A++ A+A +V+IIDTAGRL + +M I + + ++ Sbjct: 154 IGVEVFSDRGNTDPVAISKAGIAYAKANGHNVVIIDTAGRLAVDEEMMNEIANIHKAIQ- 212 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P L V+DA TGQ+A+ + F+ + G+I+TK+DG RGG I I Sbjct: 213 -----PQETLFVVDAMTGQDAVNTAKAFNDILNFDGVILTKLDGDTRGGAAISIKSVVNK 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE ++ ++ F + I G D Sbjct: 268 PIKFIGTGEKMDAIDVFYPARMAERILGMGD 298 >gi|303390938|ref|XP_003073699.1| signal recognition particle GTPase [Encephalitozoon intestinalis ATCC 50506] gi|303302847|gb|ADM12339.1| signal recognition particle GTPase [Encephalitozoon intestinalis ATCC 50506] Length = 425 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 112/205 (54%), Gaps = 19/205 (9%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR-----TSAD 168 I VGVNGVGK+T + K+ + LKV +AA DTFR+ AI+QLK +R S Sbjct: 219 ICFVGVNGVGKSTSLAKICYWLLKNKLKVYIAACDTFRAGAIEQLKTHVERFQLGGYSVG 278 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 F G D A++A A ++AQ + DV++IDTAGR+HN LM + K++++ K Sbjct: 279 FYQKGYGKDDASVARCAIQEAQHEGYDVILIDTAGRMHNKKNLMMSLTKLMKINK----- 333 Query: 229 APHSVLQVLDATTGQNALRQVEMFH-------AVAGTTGLIMTKMDGT-ARGGGLIPIVV 280 P ++ V +A G ++L ++ F+ + +++TK+D + G ++ + Sbjct: 334 -PDHIIYVGEALVGSDSLEHIKEFNRAIKDADQLRNIDSILLTKVDTVDNKIGQILNMAF 392 Query: 281 THKIPVYFLGVGEGINDLEPFVAKD 305 + P+ FLGVG+ +DL ++D Sbjct: 393 SSNAPILFLGVGQTNSDLSNIGSED 417 >gi|326388656|ref|ZP_08210249.1| signal recognition particle subunit FFH/SRP54 (srp54) [Novosphingobium nitrogenifigens DSM 19370] gi|326206907|gb|EGD57731.1| signal recognition particle subunit FFH/SRP54 (srp54) [Novosphingobium nitrogenifigens DSM 19370] Length = 495 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 87/310 (28%), Positives = 154/310 (49%), Gaps = 27/310 (8%) Query: 21 FASTSLKLKEGITDIISSRR--LDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75 F S S +L G+ D + R +D VR + ++ L+ +D+ + V ++ ++ + + Sbjct: 2 FDSLSDRL-SGVFDRLRGRGALTEDDVRAAMREVRIALLEADVALPVVRRFIDAVTEQAI 60 Query: 76 AKDVSVQRVLYDVS------ELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTT 126 Q+VL V+ +++H L+ + D + P VI++VG+ G GKTT Sbjct: 61 G-----QQVLRSVTPGQQVVKIVHDALVEMLGGGTSDLDLAATPPVVIMMVGLQGSGKTT 115 Query: 127 VIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 K+ K + + G KV++A+ D R AA +QL + + + G +A A Sbjct: 116 STAKIGKLLKEKQGKKVLMASLDVNRPAAQEQLAVLGGQVGVATLPIVPGQQPVEIANRA 175 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + A+ + +DVL++DTAGRLH + LM + + V +P L V+D+ TGQ+A Sbjct: 176 IQAAKLQAIDVLLLDTAGRLHVDQALMDEMKAVAAV------SSPRETLLVVDSLTGQDA 229 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + + F TG+++T+MDG ARGG + + P+ F GE ++ +E F + Sbjct: 230 VNVAQSFAGEVPLTGVVLTRMDGDARGGAALSMRAVTGKPIKFAATGEKLDAIEAFHPER 289 Query: 306 FSAVITGCLD 315 ++ I G D Sbjct: 290 VASRILGMGD 299 >gi|269127630|ref|YP_003301000.1| signal recognition particle protein [Thermomonospora curvata DSM 43183] gi|268312588|gb|ACY98962.1| signal recognition particle protein [Thermomonospora curvata DSM 43183] Length = 524 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 82/294 (27%), Positives = 146/294 (49%), Gaps = 22/294 (7%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +LT F+S K + DI ++ R E+ L+ +D+ + V + + + + Sbjct: 8 RLTSVFSSLRSKGRLSEADINATAR-------EIRIALLEADVALPVVKDFIAHVKERAL 60 Query: 76 AKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +VS Q+V+ V+E + ++L ++ + + P VI++ G+ G GKTT+ GK Sbjct: 61 GAEVSQALNPAQQVVKIVNEELIEILGGETRRLRFAKTP-PTVIMLAGLQGAGKTTLAGK 119 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187 L+ + G +L A D R A+ QL++ +R E G+ D +A + + Sbjct: 120 LAYWLKGQGHTPLLVAADLQRPNAVQQLQVMGERAGVPVFAPEPGNGVGDPVQVARRSVE 179 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 +A+ + DV+IIDTAGRL ++ +M + + D +P +L V+DA GQ+A+ Sbjct: 180 EARRAQHDVVIIDTAGRLGVDAEMMQ------QAIDIRDAVSPDEILFVVDAMVGQDAVN 233 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F G G+++TK+DG ARGG + + P+ F GE + D + F Sbjct: 234 TAQAFMDGVGFDGVVLTKLDGDARGGAALSVRHITGRPIMFASTGEKLEDFDLF 287 >gi|156055398|ref|XP_001593623.1| hypothetical protein SS1G_05051 [Sclerotinia sclerotiorum 1980] gi|154702835|gb|EDO02574.1| hypothetical protein SS1G_05051 [Sclerotinia sclerotiorum 1980 UF-70] Length = 660 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 87/289 (30%), Positives = 138/289 (47%), Gaps = 40/289 (13%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQ-RVLYDVSELIHKMLMP----- 98 +ED L+R ++ A ++ E EL+ + SVQ R+ + + K+L P Sbjct: 369 MEDHLLRKNVAREAAMRLCEGVERELIGVKTGSFESVQARIATAMESSLRKILTPTSSLD 428 Query: 99 --------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 +S P RP+V+ +VGVNGVGK+T + K+ + KV++ A DTF Sbjct: 429 LLREIDAVVSPPALSLKKKRPYVMSIVGVNGVGKSTNLSKICYFLLQNKYKVLVVACDTF 488 Query: 151 RSAAIDQLKIWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIID 200 RS A++QL + R + E G DAA +A ++ A + DV++ID Sbjct: 489 RSGAVEQLAVHV-RNLKELTAREGGQVELYQKGYGKDAANVAKDSVSFAAQEGYDVVLID 547 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258 TAGR HN+ LM+ + K + + P +L V +A G +++ Q F+A G Sbjct: 548 TAGRRHNDQRLMSSLEKFAKFAQ------PDKILMVGEALVGTDSVAQARNFNAAFGQGR 601 Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 G I++K D G L+ +V +PV F+GVG+ +DL K Sbjct: 602 SLDGFIISKCDTVGDMVGTLVSMVHATNVPVLFVGVGQHYSDLRNLSVK 650 >gi|313885966|ref|ZP_07819704.1| signal recognition particle protein [Porphyromonas asaccharolytica PR426713P-I] gi|312924496|gb|EFR35267.1| signal recognition particle protein [Porphyromonas asaccharolytica PR426713P-I] Length = 446 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 97/313 (30%), Positives = 143/313 (45%), Gaps = 25/313 (7%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 SE L K+ KG S IT+I + L D VR L D +D+ VA+ Sbjct: 6 SERLERSFKILKGQGS--------ITEINVAETLKD-VRRALLD----ADVNYNVARDFT 52 Query: 68 EELLTKRYAKDV--SVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVG 123 ++ K +DV SV V +L+H L L S+ + P +IL+ G+ G G Sbjct: 53 NQVKEKALGQDVLTSVNPGQMMV-KLVHDELATLMGSEAVAINLKGSPAIILMSGLQGSG 111 Query: 124 KTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 KTT GKL+ + K +L A D +R AAI QL + ++ D +A Sbjct: 112 KTTFSGKLANMLKKQEQRKPLLVACDVYRPAAIQQLHVLGEQIGVPVYSEPDSKDPVQIA 171 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 A AQ + +D +IIDTAGRL + +M I + ++ P L V+D+ TG Sbjct: 172 RNAIAHAQQEGLDTVIIDTAGRLAVDEEMMNEISSIKDAIR------PDETLFVVDSMTG 225 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 Q+A+ F G+I+TK+DG +RGG + I P+ F+G GE + L+ F Sbjct: 226 QDAVNTAAEFDKRLDFDGVILTKLDGDSRGGAALSIRSVVNKPIKFVGTGEKMEALQVFH 285 Query: 303 AKDFSAVITGCLD 315 + I G D Sbjct: 286 PSRMADRILGMGD 298 >gi|297183607|gb|ADI19734.1| hypothetical protein [uncultured bacterium EB000_36F02] Length = 452 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 87/331 (26%), Positives = 160/331 (48%), Gaps = 37/331 (11%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 LT F LK+ + + +++D+G+R + L+ +D+ + VA++ ++ + Sbjct: 1 MFENLTNKFEEIFSSLKKSPS--LDEKQVDEGLRN-IRQALLEADVSLTVAKEFIDNIKP 57 Query: 73 KRYAKDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 K +++ V +++YD EL+ K+L + N + + P +++VG+ G GK Sbjct: 58 KALGQEIVRSTSPGQMVVKIVYD--ELV-KLLGENNSEINLN-AVPPVPMMLVGLQGSGK 113 Query: 125 TTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD--AAAL 181 TT KL+K + + K+M+ + D +R AA +QLK ++ + + + D A + Sbjct: 114 TTTTAKLAKYLEINKKKKIMMVSLDVYRPAAQEQLKSLGEQN--NILTLPVIEDQLPADI 171 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 A A ++++ DTAGR + +M+ I ++ ++ P + V D+ T Sbjct: 172 CRRAVSAANLNGAEIILFDTAGRTQIDLQMMSEIKQIESIIN------PTEIFLVADSLT 225 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQ A + F TG+I+T+ DG ARGG + + ++P+ FLG+GE IN++E F Sbjct: 226 GQVAAEVAKEFKNTVNLTGIILTRADGDARGGAAVSMKYVSQVPIKFLGIGEKINNIEVF 285 Query: 302 VAKDFSAVITG-----------CLDYGEEKI 321 + I G D GEE I Sbjct: 286 HPDRIANRILGMGDIVTLVEKAAQDLGEENI 316 >gi|254852709|ref|ZP_05242057.1| signal recognition particle protein [Listeria monocytogenes FSL R2-503] gi|258606030|gb|EEW18638.1| signal recognition particle protein [Listeria monocytogenes FSL R2-503] Length = 467 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 109/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K +L A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ + +D +IIDTAGRLH + LM + ++ + Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEI------ 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ TGQ+A+ + F+ TG+++TK+DG RGG + I P+ Sbjct: 213 ATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ GE + LE F ++ I G D Sbjct: 273 FIATGEKMEALETFHPDRMASRILGMGD 300 >gi|332299387|ref|YP_004441308.1| signal recognition particle protein [Porphyromonas asaccharolytica DSM 20707] gi|332176450|gb|AEE12140.1| signal recognition particle protein [Porphyromonas asaccharolytica DSM 20707] Length = 446 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 97/313 (30%), Positives = 143/313 (45%), Gaps = 25/313 (7%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 SE L K+ KG S IT+I + L D VR L D +D+ VA+ Sbjct: 6 SERLERSFKILKGQGS--------ITEINVAETLKD-VRRALLD----ADVNYNVARDFT 52 Query: 68 EELLTKRYAKDV--SVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVG 123 ++ K +DV SV V +L+H L L S+ + P +IL+ G+ G G Sbjct: 53 NQVKEKALGQDVLTSVNPGQMMV-KLVHDELATLMGSEAVAINLKGSPAIILMSGLQGSG 111 Query: 124 KTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 KTT GKL+ + K +L A D +R AAI QL + ++ D +A Sbjct: 112 KTTFSGKLANMLKKQEQRKPLLVACDVYRPAAIQQLHVLGEQIGVPVYSEPDSKDPVQIA 171 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 A AQ + +D +IIDTAGRL + +M I + ++ P L V+D+ TG Sbjct: 172 RNAIAHAQQEGLDTVIIDTAGRLAVDEEMMNEISSIKDAIR------PDETLFVVDSMTG 225 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 Q+A+ F G+I+TK+DG +RGG + I P+ F+G GE + L+ F Sbjct: 226 QDAVNTAAEFDKRLDFDGVILTKLDGDSRGGAALSIRSVVNKPIKFVGTGEKMEALQVFH 285 Query: 303 AKDFSAVITGCLD 315 + I G D Sbjct: 286 PSRMADRILGMGD 298 >gi|255660175|ref|ZP_05405584.1| signal recognition particle protein [Mycoplasma genitalium G37] Length = 416 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 111/220 (50%), Gaps = 12/220 (5%) Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQ 157 LS+P RP I++VG+ G GKTT GKL+ + K ML D +R AAI+Q Sbjct: 49 LSQPNQELNEKRPLKIMMVGLQGSGKTTTCGKLAYWLEKKYKQKTMLVGLDIYRPAAIEQ 108 Query: 158 LKIWADRTSADFVC--SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 L+ + +T++ F ++ + A AFK A K +I DTAGRL N LM Sbjct: 109 LETLSQQTNSVFFAQGTQPVAKTTKAALSAFKTA---KCQTIICDTAGRLQTNETLM--- 162 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 +++ V L+P ++ V+D +GQ + + FH TG I++K+D AR G Sbjct: 163 DELVSVKNELNPD---EIIMVVDGLSGQEIINVAQTFHKRLKLTGFIISKLDSDARAGAA 219 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + ++P+ +GV E ++ LE F + + I G D Sbjct: 220 LSLASLLQVPIKLIGVSEKLDGLEQFHPERIANRILGLGD 259 >gi|149371680|ref|ZP_01891096.1| signal recognition particle protein [unidentified eubacterium SCB49] gi|149355307|gb|EDM43867.1| signal recognition particle protein [unidentified eubacterium SCB49] Length = 442 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 107/206 (51%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT GKL+ + S K +L A D +R AAI+QL + ++ + Sbjct: 99 PSVILMSGLQGSGKTTFSGKLANFLKSKKTKKPLLVACDVYRPAAINQLHVVGEQIGVEV 158 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 E D ++A A A+ +V+I+DTAGRL + +M I + + ++ Sbjct: 159 YSEEGNMDPVSIATNAIAHAKQNGHNVVIVDTAGRLAVDEAMMVEIENVHKAIQ------ 212 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+DA TGQ+A+ + F+ G+++TK+DG RGG I I P+ F+ Sbjct: 213 PQETLFVVDAMTGQDAVNTAKTFNERINFDGVVLTKLDGDTRGGAAISIKSVVNKPIKFI 272 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE ++ ++ F + I G D Sbjct: 273 GTGEKMDAIDIFYPSRMADRILGMGD 298 >gi|82594110|ref|XP_725288.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23480234|gb|EAA16853.1| similar to RIKEN cDNA 1300011P19 gene [Plasmodium yoelii yoelii] Length = 524 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/205 (35%), Positives = 113/205 (55%), Gaps = 20/205 (9%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + + I +GVNGVGK+T + K+ + G LK+M+AA DTFR+ AI+QL+I A Sbjct: 317 KLYSICFLGVNGVGKSTNLAKVCYYLKTKGNLKIMIAACDTFRAGAIEQLRIHAKCLDVY 376 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 G +AA +A +A A+ +K DV++IDTAGR+ +N LM +GK+I + + Sbjct: 377 LFEKGYGKNAAGIAKDAISYAKKEKYDVILIDTAGRMQDNEPLMRSLGKLILI------N 430 Query: 229 APHSVLQVLDATTGQNALRQVEMFH-----AVAGT-----TGLIMTKMDGTAR--GGGLI 276 P +L V +A G +A+ Q++ F+ A T G+++TK D G L Sbjct: 431 NPDLILFVGEALVGNDAIDQLKKFNQTLIDATCDTHKRTIDGIVLTKFDTVDDKVGTALS 490 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301 + +T K P+ F+GVG+ L+ F Sbjct: 491 MVYLTGK-PIVFVGVGQKYTHLKKF 514 >gi|169609444|ref|XP_001798141.1| hypothetical protein SNOG_07814 [Phaeosphaeria nodorum SN15] gi|160701846|gb|EAT85280.2| hypothetical protein SNOG_07814 [Phaeosphaeria nodorum SN15] Length = 567 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/205 (34%), Positives = 109/205 (53%), Gaps = 20/205 (9%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA----- 162 S RP+V+ +VGVNGVGK+T + K++ + +V++AA DTFRS A++QL++ Sbjct: 355 SPRPYVLSIVGVNGVGKSTNLSKIAFFLLQNHHRVLIAAADTFRSGAVEQLRVHVKNLQE 414 Query: 163 ----DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 + D G DAA +A +A AQ +V++IDTAGR HN+ LM+ + K Sbjct: 415 LSKREGGEVDLFEKGYGKDAANIAADAVTHAQKNGFNVVLIDTAGRRHNDQRLMSSLEKF 474 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARG-G 273 ++ P +L V +A G +++ Q F+A G G +++K D G Sbjct: 475 AKLAN------PDKILMVGEALVGTDSVAQARNFNASFGAGRKLDGFVISKCDTVGDMVG 528 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDL 298 L+ +V IPV FLG G+ +DL Sbjct: 529 TLVSMVHATGIPVVFLGTGQHYSDL 553 >gi|157738182|ref|YP_001490866.1| signal recognition particle protein [Arcobacter butzleri RM4018] gi|157700036|gb|ABV68196.1| signal recognition particle protein [Arcobacter butzleri RM4018] Length = 450 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/195 (34%), Positives = 106/195 (54%), Gaps = 6/195 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P IL+ G+ G GKTT GKL+ + KV++AA D R AA++QLK A + Sbjct: 91 STPPTTILMTGLQGSGKTTTTGKLANYLKIRKKKVLVAACDLQRLAAVEQLKQIAAQIEV 150 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 D + + +A +A ++A + DV +IDTAGRL + LM K ++ +K D Sbjct: 151 DIYFDDNEKNPVKIALKAKEKAIKEHYDVFLIDTAGRLAIDEELM----KQLKDIK--DA 204 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P+ + V D+ TG +A + F G G+I++K DG +GG + I ++P+ Sbjct: 205 INPNEIFYVADSLTGHDATKTAITFKEKIGIDGVILSKYDGDTKGGVALSIANQVEVPLR 264 Query: 288 FLGVGEGINDLEPFV 302 F+G+GE + DLE F+ Sbjct: 265 FIGIGEKMPDLEVFI 279 >gi|295103451|emb|CBL00995.1| signal recognition particle subunit FFH/SRP54 (srp54) [Faecalibacterium prausnitzii SL3/3] Length = 451 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 83/275 (30%), Positives = 138/275 (50%), Gaps = 16/275 (5%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ VA+ ++ + ++V Q+V+ V+E + LM S+ Sbjct: 34 EVRMALLEADVNYKVAKDFCAKVSERAMGQEVMESLTPAQQVVKIVNEELVA-LMGGSEA 92 Query: 103 FNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 + ++ VI++ G+ G GKTT KL+K G + ML A D +R AAIDQL++ Sbjct: 93 ARLNIKNKGQTVIMLCGLQGNGKTTHAAKLAKFYIKQGRRPMLVACDIYRPAAIDQLQVV 152 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 + A V + G+ +A +A A+ D++I+DTAGRL + +LM + Sbjct: 153 GKQAGAP-VFTLPGAKPPEIARKALAHAKDYGNDIIILDTAGRLQIDEVLM-------QE 204 Query: 222 LKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 L + P L V+DA GQ+A+ + F+ G G+I+TK DG RGG + ++ Sbjct: 205 LVDIKAAVPVDETLLVVDAMAGQDAVNVAKTFNETVGVDGIILTKTDGDTRGGAALSVLA 264 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F G GE ++DL+ F ++ I G D Sbjct: 265 VTGKPIKFQGTGEKLDDLDVFHPDRMASRILGMGD 299 >gi|67459498|ref|YP_247122.1| Signal recognition particle protein [Rickettsia felis URRWXCal2] gi|67005031|gb|AAY61957.1| Signal recognition particle protein [Rickettsia felis URRWXCal2] Length = 487 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 148/290 (51%), Gaps = 16/290 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89 I++ ++D +R+ + L+ SD+ + V + + E+ K ++V SV Q ++ + Sbjct: 59 ILTEAQIDAAMRD-IRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIH 117 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 E + +L + + +P V L+VG+ G GKTT KL+ ++ + KV+L + D Sbjct: 118 EEMINLLASSESETKLNLNSKPPVNFLMVGLQGSGKTTASSKLALRLKNQNKKVLLVSLD 177 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 T+R AA +QL I A+ + + G + A +A+ V+I DTAGR + Sbjct: 178 TYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAIAEAKISAYGVVIYDTAGRTQID 237 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 +M + ++++ P L V+D+ TGQ+A+ F+ +GLI++++DG Sbjct: 238 KEMMEEALAIKKIVE------PTETLLVIDSMTGQDAVVTANSFNEKLEISGLILSRIDG 291 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 ++GG + + K P+ FL GE + DLE F A+ ++ I LD G+ Sbjct: 292 DSKGGAALSVKYITKKPIKFLSSGEKLTDLEEFDAERLASRI---LDMGD 338 >gi|307294709|ref|ZP_07574551.1| signal recognition particle protein [Sphingobium chlorophenolicum L-1] gi|306879183|gb|EFN10401.1| signal recognition particle protein [Sphingobium chlorophenolicum L-1] Length = 482 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 85/283 (30%), Positives = 146/283 (51%), Gaps = 16/283 (5%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIH 93 +D VR + ++ L+ +D+ + V ++ V++ + DV SV Q V+ VS+ + Sbjct: 24 EDDVRAAMREVRIALLEADVALPVVRQFVDQATERAVGSDVLRSVTPGQMVVKIVSDTLT 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRS 152 + L + D + P VI++VG+ G GKTT K++K++ + K V++A+ D R Sbjct: 84 ETLGAETSDLLIDVTP-PAVIMMVGLQGSGKTTSTAKIAKRLKEKERKKVLMASLDVQRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AA +QL + +T + G +A A + A+ + DV+++DTAGRLH + LM Sbjct: 143 AAQEQLAVLGTQTDVATLPIVPGQQPVEIAKRALQAAKLQGFDVVMLDTAGRLHVDQALM 202 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + + V P +L V+D+ TGQ+A+ F + TG+++T+MDG ARG Sbjct: 203 DEMKAVAEV------SNPAEILLVVDSLTGQDAVNVATSFTSQVPLTGVVLTRMDGDARG 256 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + + P+ F G GE ++ +EPF + I G D Sbjct: 257 GAALSMRAVTGRPIKFAGTGEKLDAIEPFHPARVAQRILGMGD 299 >gi|300120716|emb|CBK20270.2| unnamed protein product [Blastocystis hominis] Length = 565 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 106/203 (52%), Gaps = 17/203 (8%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 I+ GVNGVGK+T + K++ GL+V+LAA DT+RS A++QL++ DR D Sbjct: 362 IVFCGVNGVGKSTSLSKVAYYFKSKGLRVLLAACDTYRSGAVEQLRVHVDRLGLDLFERG 421 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 D + +AY A + A + DV +IDTAGR+ NN LM + K++ V + P + Sbjct: 422 YTKDPSDVAYYALRYANEQGFDVCLIDTAGRMQNNEGLMRSLVKLVNV------NHPDLI 475 Query: 234 LQVLDATTGQNALRQVEMF----HAVAG------TTGLIMTKMDGT-ARGGGLIPIVVTH 282 L V +A G + + Q+ F H ++ G+++TK D + G + +V Sbjct: 476 LFVGEALVGNDGVDQLREFNRALHDLSDLAEPRLVDGIVLTKFDTIDDKVGAALSMVYCT 535 Query: 283 KIPVYFLGVGEGINDLEPFVAKD 305 P+ F+G G+ +L+ KD Sbjct: 536 GKPIVFVGTGQKYTNLKRLNVKD 558 >gi|281420783|ref|ZP_06251782.1| signal recognition particle protein [Prevotella copri DSM 18205] gi|281405075|gb|EFB35755.1| signal recognition particle protein [Prevotella copri DSM 18205] Length = 450 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 108/209 (51%), Gaps = 8/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 SH P VIL+ G+ G GKTT GKL+ + + G K +L A D +R AAI QL + ++ Sbjct: 97 SH-PAVILMSGLQGSGKTTFSGKLANMLKTKKGKKPLLVACDVYRPAAIQQLHVVGEQVG 155 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D ++A A +QA+ DV+I+DTAGRL + +M I + L+ Sbjct: 156 VPVYSEPENKDVLSIADHAIQQAKTNGNDVVIVDTAGRLAIDEQMMNEISNLKNHLR--- 212 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + I P+ Sbjct: 213 ---PDETLFVVDSMTGQDAVNTAKEFNDRLDFNGVVLTKLDGDTRGGAALSIRTVVTKPI 269 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G GE ++ ++ F + I G D Sbjct: 270 KFIGTGEKMDAIDVFHPARMADRILGMGD 298 >gi|145610183|ref|XP_366587.2| hypothetical protein MGG_02663 [Magnaporthe oryzae 70-15] gi|145017543|gb|EDK01906.1| hypothetical protein MGG_02663 [Magnaporthe oryzae 70-15] Length = 623 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 92/281 (32%), Positives = 139/281 (49%), Gaps = 31/281 (11%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99 RL +GV +EL + S + + E R S +L ++ + + L Sbjct: 348 RLCEGVEKELVGVKTGSFESINTRVQAAMEASLTRMLTPTSSLDLLREIDSVTQPSVTSL 407 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 KP RP+V+ +VGVNGVGK+T + K+ + KV++AAGDTFRS A++QL Sbjct: 408 RKP-------RPYVMSIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVEQLA 460 Query: 160 IWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 + R + E G DAAA+A +A A + DV++IDTAGR HN+ Sbjct: 461 VHV-RNLKELTAREGGQVELYQKGYGKDAAAVAKDAVSHAAQEGFDVVLIDTAGRRHNDQ 519 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTK 265 LM+ + K + + P +L V +A G +++ Q F+A G+ G I++K Sbjct: 520 RLMSSLEKFAKFAQ------PDKILMVGEALVGTDSVAQARNFNAAFGSGRSLDGFIISK 573 Query: 266 MD--GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 D GT G L+ IV +PV F+GVG+ +DL F K Sbjct: 574 CDTVGTMV-GTLVSIVHATNVPVLFVGVGQHYSDLRNFSVK 613 >gi|134102494|ref|YP_001108155.1| signal recognition particle GTPase [Saccharopolyspora erythraea NRRL 2338] gi|291004115|ref|ZP_06562088.1| signal recognition particle protein [Saccharopolyspora erythraea NRRL 2338] gi|133915117|emb|CAM05230.1| signal recognition particle GTPase [Saccharopolyspora erythraea NRRL 2338] Length = 518 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/281 (27%), Positives = 138/281 (49%), Gaps = 15/281 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + + + + + +VS Q+V+ V+E + +L Sbjct: 28 DATAREIRIALLEADVALPVVRSFIAGVKERAKSAEVSQALNPAQQVIKIVNEELVGILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + P VI++ G+ G GKTT+ GKL++ + G ML A D R A++Q Sbjct: 88 GETRRLEYAKTP-PTVIMLAGLQGSGKTTLAGKLARWLQGQGHTPMLVAADLQRPNAVNQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L++ +R E G+ D ++ + +A+ + D++I+DTAGRL + +M Sbjct: 147 LQVVGERAGVAVFAPEPGNGVGDPVDVSRRSIDEARRAQHDIVIVDTAGRLGIDQEMMQQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + +K P L V+DA GQ+A+ E F G +G+++TK+DG ARGG Sbjct: 207 AADIRDAVK------PDETLFVVDAMIGQDAVSTAEAFRDGVGFSGVVLTKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ F GE + D + F ++ I G D Sbjct: 261 ALSVRQVTGQPIMFASNGEKLEDFDVFHPDRMASRILGMGD 301 >gi|254461491|ref|ZP_05074907.1| signal recognition particle protein [Rhodobacterales bacterium HTCC2083] gi|206678080|gb|EDZ42567.1| signal recognition particle protein [Rhodobacteraceae bacterium HTCC2083] Length = 502 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 86/269 (31%), Positives = 139/269 (51%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA+ V+ + K + V+ Q+V+ V + + +L +P Sbjct: 38 LLEADVSLPVARDFVKAVQEKATGQAVTKSITPGQQVVKIVHDELQHVLRGEGEPGELKI 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P IL+VG+ G GKTT GKL+K++S+ G +V++A+ D +R AA QL I + Sbjct: 98 DNAPAPILMVGLQGGGKTTTTGKLAKRLSEKNGKRVLMASLDIYRPAAQQQLAILGTQIG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G A +A A +QA DV ++DTAGRL + LM + + +R D Sbjct: 158 VDTLPIVAGESAVQIAKRAKQQATLGGYDVYMLDTAGRLQIDETLMKEV-EDVR-----D 211 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+D TGQ A+ E F G +G+++T+MDG RGG + + P+ Sbjct: 212 AVNPRETLLVVDGLTGQVAVEVAEEFDGKIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE ++ LE F + + I G D Sbjct: 272 KFVGMGEKMDALETFEPERVAGRILGMGD 300 >gi|238759639|ref|ZP_04620800.1| Cell division protein ftsY [Yersinia aldovae ATCC 35236] gi|238702182|gb|EEP94738.1| Cell division protein ftsY [Yersinia aldovae ATCC 35236] Length = 372 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 68/174 (39%), Positives = 102/174 (58%), Gaps = 12/174 (6%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +L + T L G + S +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 205 RLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTEHAS 264 Query: 76 AKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129 K + LY ++SE++ K+ PL D S + P VIL+VGVNGVGKTT IG Sbjct: 265 RKQLKDAEALYGKLKEEMSEILSKVDKPL------DVSGKNPFVILMVGVNGVGKTTTIG 318 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KL+++ G VMLAAGDTFR+AA++QL++W DR V G+D+A++ + Sbjct: 319 KLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNKIAVVAQHTGADSASVYF 372 >gi|256379924|ref|YP_003103584.1| signal recognition particle protein [Actinosynnema mirum DSM 43827] gi|255924227|gb|ACU39738.1| signal recognition particle protein [Actinosynnema mirum DSM 43827] Length = 518 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 78/281 (27%), Positives = 136/281 (48%), Gaps = 15/281 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + + ++ + +VS Q+V+ V+E + +L Sbjct: 28 DATAREIRVALLEADVALPVVRAFIAKVKERAKGAEVSQALNPAQQVIKIVNEELVAILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ N + P VI++ G+ G GKTT+ GKL+K + G +L A D R A+ Q Sbjct: 88 GETRRINL-AKNPPSVIMLAGLQGAGKTTLAGKLAKWLRGQGHTPLLVACDLQRPNAVTQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L++ +R E G+ D +A ++A+ + D++++DTAGRL + +M Sbjct: 147 LQVVGERAGVSVFAPEPGNGVGDPVDVAKRGVEEAKRAQHDIVVVDTAGRLGVDEEMMRQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + + P VL V+DA GQ+A+ F G TG+++TK+DG ARGG Sbjct: 207 AADIRAAVN------PDEVLFVVDAMIGQDAVNTATAFSEGVGFTGVVLTKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ F GE + D + F ++ I G D Sbjct: 261 ALSVREVTGQPILFASNGEKLEDFDVFHPDRMASRILGMGD 301 >gi|16803841|ref|NP_465326.1| hypothetical protein lmo1801 [Listeria monocytogenes EGD-e] gi|47097384|ref|ZP_00234935.1| signal recognition particle protein [Listeria monocytogenes str. 1/2a F6854] gi|224500031|ref|ZP_03668380.1| hypothetical protein LmonF1_10289 [Listeria monocytogenes Finland 1988] gi|224501398|ref|ZP_03669705.1| hypothetical protein LmonFR_02565 [Listeria monocytogenes FSL R2-561] gi|254831598|ref|ZP_05236253.1| hypothetical protein Lmon1_09603 [Listeria monocytogenes 10403S] gi|254899502|ref|ZP_05259426.1| hypothetical protein LmonJ_06799 [Listeria monocytogenes J0161] gi|254912359|ref|ZP_05262371.1| signal recognition particle protein [Listeria monocytogenes J2818] gi|254936686|ref|ZP_05268383.1| signal recognition particle protein [Listeria monocytogenes F6900] gi|284802247|ref|YP_003414112.1| hypothetical protein LM5578_2003 [Listeria monocytogenes 08-5578] gi|284995389|ref|YP_003417157.1| hypothetical protein LM5923_1954 [Listeria monocytogenes 08-5923] gi|16411255|emb|CAC99879.1| ffh [Listeria monocytogenes EGD-e] gi|47014232|gb|EAL05214.1| signal recognition particle protein [Listeria monocytogenes str. 1/2a F6854] gi|258609282|gb|EEW21890.1| signal recognition particle protein [Listeria monocytogenes F6900] gi|284057809|gb|ADB68750.1| hypothetical protein LM5578_2003 [Listeria monocytogenes 08-5578] gi|284060856|gb|ADB71795.1| hypothetical protein LM5923_1954 [Listeria monocytogenes 08-5923] gi|293590340|gb|EFF98674.1| signal recognition particle protein [Listeria monocytogenes J2818] Length = 450 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 109/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K +L A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ + +D +IIDTAGRLH + LM + ++ + Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEI------ 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ TGQ+A+ + F+ TG+++TK+DG RGG + I P+ Sbjct: 213 ATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ GE + LE F ++ I G D Sbjct: 273 FIATGEKMEALETFHPDRMASRILGMGD 300 >gi|307108511|gb|EFN56751.1| hypothetical protein CHLNCDRAFT_48710 [Chlorella variabilis] Length = 415 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 92/290 (31%), Positives = 145/290 (50%), Gaps = 35/290 (12%) Query: 53 LIRSDIGVAVAQKIVEEL----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 L+ +D+ + V ++ V+++ L +R K +S + L V K LM + Sbjct: 51 LLEADVSLPVVRRFVKKVEDAALGERVVKGLSPDQKLTKVVYEELKSLMGGEQAELVQPK 110 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + P VIL+ G+ G GKTT GKL+ + GLKV+L A D +R AAIDQL + Sbjct: 111 YGPSVILMAGLQGTGKTTAAGKLALYLKKKGLKVLLVATDVYRPAAIDQLVTLGGKIEVP 170 Query: 169 FVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 E+G+ A +A + ++A+A++ D +I+DTAGRL + LMA + + V++ Sbjct: 171 VF--ELGTQVAPPEIARQGLEKAKAEEYDAVIVDTAGRLQIDDRLMAELRETKEVVQ--- 225 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI---VVTHK 283 P L V+DA TGQ A V+ F+ TG ++TKMDG +RGG + I ++ Sbjct: 226 ---PTDTLLVVDAMTGQEAAGLVKAFNEAVDITGAVLTKMDGDSRGGAALSIKEAILCFN 282 Query: 284 I------------------PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + P+ F+G GE + LEPF + ++ I G D Sbjct: 283 VFGDDCSSPPWRCLQVSGRPIKFVGTGEKMEALEPFFPERMASRILGMGD 332 >gi|149209827|ref|XP_001522288.1| hypothetical protein MGCH7_ch7g395 [Magnaporthe oryzae 70-15] gi|86196350|gb|EAQ70988.1| hypothetical protein MGCH7_ch7g395 [Magnaporthe oryzae 70-15] Length = 640 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 92/281 (32%), Positives = 139/281 (49%), Gaps = 31/281 (11%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99 RL +GV +EL + S + + E R S +L ++ + + L Sbjct: 365 RLCEGVEKELVGVKTGSFESINTRVQAAMEASLTRMLTPTSSLDLLREIDSVTQPSVTSL 424 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 KP RP+V+ +VGVNGVGK+T + K+ + KV++AAGDTFRS A++QL Sbjct: 425 RKP-------RPYVMSIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVEQLA 477 Query: 160 IWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 + R + E G DAAA+A +A A + DV++IDTAGR HN+ Sbjct: 478 VHV-RNLKELTAREGGQVELYQKGYGKDAAAVAKDAVSHAAQEGFDVVLIDTAGRRHNDQ 536 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTK 265 LM+ + K + + P +L V +A G +++ Q F+A G+ G I++K Sbjct: 537 RLMSSLEKFAKFAQ------PDKILMVGEALVGTDSVAQARNFNAAFGSGRSLDGFIISK 590 Query: 266 MD--GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 D GT G L+ IV +PV F+GVG+ +DL F K Sbjct: 591 CDTVGTMV-GTLVSIVHATNVPVLFVGVGQHYSDLRNFSVK 630 >gi|56551971|ref|YP_162810.1| signal recognition particle protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241761945|ref|ZP_04760030.1| signal recognition particle protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752484|ref|YP_003225377.1| signal recognition particle protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543545|gb|AAV89699.1| signal recognition particle protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241373625|gb|EER63197.1| signal recognition particle protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258551847|gb|ACV74793.1| signal recognition particle protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 474 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 92/292 (31%), Positives = 146/292 (50%), Gaps = 19/292 (6%) Query: 21 FASTSLKLKEGITDIISSR--RLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75 F S S +L G+ D + R +D VR+ + ++ L+ +D+ + V + V ++ K Sbjct: 2 FGSLSERL-SGVFDRLRGRGALTEDDVRQAMREVRIALLEADVALPVVRDFVSKITEKAI 60 Query: 76 AKDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +V SV Q+V+ V + + +ML + N + P VIL+VG+ G GKTT K Sbjct: 61 GHNVLKSVTPGQQVVKIVYDALVEMLGSDTSDLNLAVNP-PAVILMVGLQGSGKTTTSAK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L KK+ + K V++A+ D R AA +QL + + G +A A A Sbjct: 120 LGKKLKEKDHKKVLMASLDVHRPAAQEQLATLGQQADVPTLPIIAGQQPVEIAQRALTSA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + + DV+I+DTAGRLH + +LM + + D P L V+DA GQ+A+ Sbjct: 180 RLQGYDVVILDTAGRLHIDQLLMDEMKAVA------DSSQPAETLLVVDALAGQDAVNIA 233 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 F TG+I+T+MDG ARGG + + P+ F+G E ++ L PF Sbjct: 234 RSFSEQVDLTGVILTRMDGDARGGAALSMRAVTGKPIKFVGTSEKLDGLSPF 285 >gi|147733507|sp|Q4UKH4|SRP54_RICFE RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog Length = 449 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 148/290 (51%), Gaps = 16/290 (5%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89 I++ ++D +R+ + L+ SD+ + V + + E+ K ++V SV Q ++ + Sbjct: 21 ILTEAQIDAAMRD-IRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIH 79 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 E + +L + + +P V L+VG+ G GKTT KL+ ++ + KV+L + D Sbjct: 80 EEMINLLASSESETKLNLNSKPPVNFLMVGLQGSGKTTASSKLALRLKNQNKKVLLVSLD 139 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 T+R AA +QL I A+ + + G + A +A+ V+I DTAGR + Sbjct: 140 TYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAIAEAKISAYGVVIYDTAGRTQID 199 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 +M + ++++ P L V+D+ TGQ+A+ F+ +GLI++++DG Sbjct: 200 KEMMEEALAIKKIVE------PTETLLVIDSMTGQDAVVTANSFNEKLEISGLILSRIDG 253 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 ++GG + + K P+ FL GE + DLE F A+ ++ I LD G+ Sbjct: 254 DSKGGAALSVKYITKKPIKFLSSGEKLTDLEEFDAERLASRI---LDMGD 300 >gi|222823997|ref|YP_002575571.1| signal recognition particle protein [Campylobacter lari RM2100] gi|222539219|gb|ACM64320.1| signal recognition particle protein [Campylobacter lari RM2100] Length = 445 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 105/195 (53%), Gaps = 6/195 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P V+L+ G+ G GKTT K++ + KV++AA D R AA++QL+ Sbjct: 92 SKPPTVVLMCGLQGGGKTTTTVKIANYLKLRNKKVLIAACDLQRLAAVEQLRQLTQANEL 151 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 D E ++ +A +A ++A+ DVL++DTAGRL ++ LM + ++ +L Sbjct: 152 DLFFIENENNPLNVAKQALEKAKNSMYDVLLVDTAGRLAIDTALMNELKEVKAILN---- 207 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P V V DA +GQ+ ++ F+ TG+I++K D +GG + I +P+ Sbjct: 208 --PDEVFYVADAMSGQDGVKTASSFNEALEITGVILSKFDADTKGGVALGIAKQIGVPLR 265 Query: 288 FLGVGEGINDLEPFV 302 F+GVGE + DLE F+ Sbjct: 266 FIGVGEKVADLEVFI 280 >gi|171918534|gb|ACB58647.1| signal recognition particle protein [Veillonella dispar] Length = 222 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/203 (33%), Positives = 103/203 (50%), Gaps = 7/203 (3%) Query: 114 ILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 I++VG+ G GKTT GKL+ K+ + + ++ A D +R AAIDQLK + + Sbjct: 1 IMMVGLQGAGKTTFAGKLANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDM 60 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 A + + QA+ + D ++IDTAGRL + LM +R +K L P+ Sbjct: 61 GTEHSAVEIVSQGLAQAKENRNDYVLIDTAGRLQIDEKLMT----ELRDIKAL--ANPNE 114 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 +L V+D+ GQ A F+ TG+I+TK+DG RGG + + P+ F G G Sbjct: 115 ILLVVDSMIGQEAANVAREFNQQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTG 174 Query: 293 EGINDLEPFVAKDFSAVITGCLD 315 E I D+E F S+ I G D Sbjct: 175 EKITDIETFHPDRMSSRILGMGD 197 >gi|154491073|ref|ZP_02031014.1| hypothetical protein PARMER_00992 [Parabacteroides merdae ATCC 43184] gi|154088821|gb|EDN87865.1| hypothetical protein PARMER_00992 [Parabacteroides merdae ATCC 43184] Length = 441 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 98/314 (31%), Positives = 154/314 (49%), Gaps = 27/314 (8%) Query: 8 SESLSWIRKLTKGFASTSLKLKEG-ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 SE L KL KG EG IT+I + L D VR+ L D +D+ VA+ Sbjct: 6 SERLDRSFKLLKG---------EGKITEINVAETLKD-VRKALLD----ADVNYKVAKGF 51 Query: 67 VEELLTKRYAKDV--SVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGV 122 + + K ++V SV+ V +++H L L + D P +IL+ G+ G Sbjct: 52 TDTVKAKALGQNVLTSVKPSQLMV-KIVHDELADLMGGTATDLDLKGSPAIILMSGLQGS 110 Query: 123 GKTTVIGKLSKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT GKL+ + K L AA D +R AAI+QL++ ++ + A+ Sbjct: 111 GKTTFSGKLANLLKTKKNKKPLLAACDVYRPAAIEQLRVVGEQVGVPVYMELENKNPVAI 170 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 A A ++A+AK DV+I+DTAGRL + +M I + ++ P L V+D+ T Sbjct: 171 AMNAIREARAKGNDVVIVDTAGRLAIDEQMMKEIAAIKSAIQ------PDETLFVVDSMT 224 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQ+A+ + F+ G+++TK+DG RGG + I P+ F+G GE ++ L+ F Sbjct: 225 GQDAVNTAKEFNERLDFDGVVLTKLDGDTRGGAALSIRTVVDKPIKFVGTGEKMDALDIF 284 Query: 302 VAKDFSAVITGCLD 315 + + I G D Sbjct: 285 HPERMADRILGMGD 298 >gi|145545839|ref|XP_001458603.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124426424|emb|CAK91206.1| unnamed protein product [Paramecium tetraurelia] Length = 585 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 145/293 (49%), Gaps = 32/293 (10%) Query: 27 KLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA-KDVSV 81 KL I ++ +++L + V ++ ++ L++ ++ +AQK+V+ + T A K + Sbjct: 280 KLTGKIQNLTGNKQLTEEDLLPVLDDFKNALMQKNVAEEIAQKLVDSIKTNLLATKTKAF 339 Query: 82 QRVLYDVSELIH----KMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 Q + V E + ++L P +++ +P+VI+++GVNGVGK+T + KL Sbjct: 340 QSIRTSVQEAMKSTLTRILTPNRHIDIIAEALRAKEKQKPYVIVIIGVNGVGKSTTLAKL 399 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 G +M+AA D FR+ A++QLK D +AY+A ++A Sbjct: 400 GYLFKSQGFSLMIAACDNFRAGAVEQLKTHGQCLGIPVYDRGYKDDPPEIAYQAIREATI 459 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 KK+DV+++DTAGR+ +N LM + +++ + + P VL V +A G + + Q+ Sbjct: 460 KKIDVVLVDTAGRMQHNEPLMRALSRIVTM------NNPDLVLFVGEALVGNDGVDQLVN 513 Query: 252 FHA----------VAGTTGLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGE 293 F+ V +I++K D + G + + P+ F+GVG+ Sbjct: 514 FNKALIVNSPKDNVREIDAIILSKFDTVDEKVGAALSLTSATGKPILFVGVGQ 566 >gi|325187752|emb|CCA22298.1| signal recognition particle receptor subunit alpha [Albugo laibachii Nc14] Length = 589 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 104/203 (51%), Gaps = 17/203 (8%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S R + I+ VGVNGVGK+T + K+ + G+KVM+AA DTFRS A++QL A Sbjct: 380 SGRAYSIVFVGVNGVGKSTSLSKICYYLKSKGVKVMIAACDTFRSGAVEQLNQHAKVLDV 439 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + AA+A EA + A D ++IDTAGR+ NN LM + K++ Sbjct: 440 PLFERGYAKNPAAVAQEAIQHATTNSFDCVLIDTAGRMQNNEPLMRALAKLV------SS 493 Query: 228 HAPHSVLQVLDATTGQNALRQVEMF-HAVA---------GTTGLIMTKMDG-TARGGGLI 276 + P +L V +A G + + Q+ MF A+A G G+++TK D + G + Sbjct: 494 NNPDLILFVGEALVGNDGINQLSMFDRALADSSDRQDAHGIDGIVITKFDTIDDKVGAAV 553 Query: 277 PIVVTHKIPVYFLGVGEGINDLE 299 +V P+ F+G G+ L+ Sbjct: 554 SLVYKTGQPIMFVGTGQKYTHLK 576 >gi|118443987|ref|YP_878286.1| signal recognition particle protein [Clostridium novyi NT] gi|118134443|gb|ABK61487.1| signal recognition particle protein [Clostridium novyi NT] Length = 451 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 84/286 (29%), Positives = 152/286 (53%), Gaps = 15/286 (5%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSV-QRVLYDVSE 90 +S + + +RE ++ L+ +D+ + ++ V E+ L + K ++ Q+V+ V++ Sbjct: 23 LSEKDIKQAMRE-VKLALLEADVNYKIVRQFVKTTGEKCLGEEVMKSLTPGQQVVKIVND 81 Query: 91 LIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 + +++ S +FS++ VI++VG+ G GKTT+ GKL+ ++ K +L A D Sbjct: 82 ELKELMG--STESKIEFSNKGLTVIMLVGLQGAGKTTMAGKLALQLRKNNKKPLLVACDI 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 +R AAI QL++ + +A + + A+ +V+IIDTAGRLH + Sbjct: 140 YRPAAIKQLQVVGKQIDVPVFSMGDKVSPVDIAKASIEHAKNNNNNVVIIDTAGRLHIDE 199 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 LM + + ++ P+ +L V+D+ TGQ+A+ E F+ TG+I+TK+DG Sbjct: 200 ALMEELENIKGSVE------PNEILLVVDSMTGQDAVNVSETFNNKLDITGVILTKLDGD 253 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I P+ ++G+GE +NDLE F ++ I G D Sbjct: 254 TRGGAALSIKAVTGKPIKYVGLGEKMNDLEVFHPDRMASRILGMGD 299 >gi|119717490|ref|YP_924455.1| signal recognition particle subunit FFH/SRP54 (srp54) [Nocardioides sp. JS614] gi|119538151|gb|ABL82768.1| signal recognition particle subunit FFH/SRP54 (srp54) [Nocardioides sp. JS614] Length = 523 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 85/293 (29%), Positives = 145/293 (49%), Gaps = 19/293 (6%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 FA+ S +L + ++ RL D E+ L+ +D+ + V ++ V + + Sbjct: 2 FATLSDRLADTFKNLRGKGRLSEADIDATAREIRIALLEADVALPVVKEFVGAVKERARG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++VS Q+V+ V+E + +L ++ + + P VI++ G+ G GKTT+ KL Sbjct: 62 EEVSQALNPAQQVVKIVNEELVAILGGEARRLRYAKTG-PTVIMLAGLQGAGKTTLAAKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188 + + + G +L A D R A++QL++ +R E G+ D +A + ++ Sbjct: 121 ALWLKEQGKSPLLVAADLQRPNAVNQLQVNGERAGVPVFAPEPGNGVGDPVGVARASIEE 180 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ DV+I+DTAGRL ++ +M IR D P VL V+DA GQ+A+ Sbjct: 181 AKRTLHDVVIVDTAGRLGVDAEMMQQAAD-IR-----DAVQPDEVLFVVDAMIGQDAVVT 234 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F G G+++TK+DG ARGG + I PV F GE + D + F Sbjct: 235 AQAFLDGVGYDGVVLTKLDGDARGGAALSIASITGKPVMFASAGEKLTDFDLF 287 >gi|254829203|ref|ZP_05233890.1| signal recognition particle protein [Listeria monocytogenes FSL N3-165] gi|290893069|ref|ZP_06556058.1| signal recognition particle protein [Listeria monocytogenes FSL J2-071] gi|258601615|gb|EEW14940.1| signal recognition particle protein [Listeria monocytogenes FSL N3-165] gi|290557429|gb|EFD90954.1| signal recognition particle protein [Listeria monocytogenes FSL J2-071] Length = 450 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 109/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K +L A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ + +D +IIDTAGRLH + LM + ++ + Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEI------ 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ TGQ+A+ + F+ TG+++TK+DG RGG + I P+ Sbjct: 213 ATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ GE + LE F ++ I G D Sbjct: 273 FIATGEKMEALETFHPDRMASRILGMGD 300 >gi|300783873|ref|YP_003764164.1| signal recognition particle, subunit SRP54 [Amycolatopsis mediterranei U32] gi|299793387|gb|ADJ43762.1| signal recognition particle, subunit SRP54 [Amycolatopsis mediterranei U32] Length = 512 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 83/281 (29%), Positives = 137/281 (48%), Gaps = 15/281 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + + ++ + +VS Q+V+ V+E + +L Sbjct: 28 DATAREIRIALLEADVALGVVKTFIAKIKERAKGAEVSQALNPAQQVIKIVNEELVGILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ N + P VI++ G+ G GKTT+ GKL+ + G ML A D R A+ Q Sbjct: 88 GETRRLNLAKTP-PTVIMLAGLQGAGKTTLAGKLALWLKKQGHTPMLVACDLQRPNAVTQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L++ +R E G+ D +A A +A+ + DV+++DTAGRL + LM Sbjct: 147 LQVVGERAGVVTFAPEPGNGVGDPVDVARRAIAEAKHAQHDVVVVDTAGRLGVDEELMKQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D P VL V+DA GQ+A+ + F G +G+++TK+DG ARGG Sbjct: 207 AAD-IR-----DAVEPDEVLFVVDAMIGQDAVTTAQAFQDGVGFSGVVLTKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ F GE + D + F ++ I G D Sbjct: 261 ALSVREVTGQPILFASNGEKLEDFDTFHPDRMASRILGMGD 301 >gi|116582905|gb|ABK00075.1| regulatory protein [Neisseria gonorrhoeae] Length = 140 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 79/118 (66%), Gaps = 1/118 (0%) Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 + E ++ ++ PL KP + P VI++ G+NG GKTT IGKL+K G V+LAAG Sbjct: 22 LKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAG 81 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 DTFR+AA +QL+ W +R + V S+ D+AA+ ++A + A+A+ +D+++ DTAGRL Sbjct: 82 DTFRAAAREQLQAWGERNNVT-VISQTAGDSAAVCFDAVQAAKARGIDIVLADTAGRL 138 >gi|206895825|ref|YP_002247046.1| signal recognition particle protein [Coprothermobacter proteolyticus DSM 5265] gi|206738442|gb|ACI17520.1| signal recognition particle protein [Coprothermobacter proteolyticus DSM 5265] Length = 434 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 80/279 (28%), Positives = 126/279 (45%), Gaps = 23/279 (8%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102 D ++L LLI +D+ + V ++VE L K + V Y + + ++ L Sbjct: 28 DQFLKDLRWLLIEADVSLPVVNELVERLREKLKPQTGIVSPQDYLLKTVYEELTALLG-- 85 Query: 103 FNWDFSHRP--------HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 S+RP + ++ G+ G GKTT KL + G V+L A D +R A Sbjct: 86 -----SYRPLKVNPRGISLYVLAGLQGSGKTTTAAKLGYFLKRNGKSVVLGAADPYRPAG 140 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 +QL++ A F ++F + DVLI+DTAGRLH + ++ Sbjct: 141 AEQLRVLASENGLYFESFVENGKVDIAKIQSFMKKSLH--DVLILDTAGRLHVETDMLQE 198 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + + + L P VL V+DA GQ A + F A +G+I+ K DG GG Sbjct: 199 LSMINKQLN------PQEVLLVVDAMLGQEAANIAKSFKEAAPVSGVILAKADGDELGGA 252 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 + + +P+ F+G GE I D EPF + +A+I G Sbjct: 253 ALSVAYVSGVPILFMGTGEHIRDFEPFDPNETAAMILGI 291 >gi|313632786|gb|EFR99746.1| signal recognition particle protein [Listeria seeligeri FSL N1-067] Length = 427 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 109/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K +L A D +R AAI QL+ + D Sbjct: 78 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 135 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A ++A+ +D +IIDTAGRLH + LM + ++ + Sbjct: 136 PVFSLGDQVSPVEIAKQAIEKAKEDHLDYVIIDTAGRLHIDETLMDELKQVKEIAN---- 191 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ TGQ+A+ E F+ TG+++TK+DG RGG + I P+ Sbjct: 192 --PTEILLVVDSMTGQDAVNVAESFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 249 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ GE + +E F ++ I G D Sbjct: 250 FVATGEKMEAIETFHPDRMASRILGMGD 277 >gi|19113452|ref|NP_596660.1| signal recognition particle receptor alpha subunit Srp101 [Schizosaccharomyces pombe 972h-] gi|74644172|sp|O43032|SRPR_SCHPO RecName: Full=Signal recognition particle receptor subunit alpha homolog; Short=SR-alpha; AltName: Full=Docking protein alpha; Short=DP-alpha gi|2950469|emb|CAA17783.1| signal recognition particle receptor alpha subunit Srp101 [Schizosaccharomyces pombe] Length = 547 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 110/200 (55%), Gaps = 16/200 (8%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR---- 164 +RP+ I ++GVNGVGK+T + K++ + ++++AA DTFRS AI+QL + Sbjct: 340 NRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFRILVAACDTFRSGAIEQLGVHVKNLQSL 399 Query: 165 --TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 +S + G D++ + A + A+ DV++IDTAGR HN+ LM + K + Sbjct: 400 KGSSIELFAQGYGKDSSFVVKNAVEYAKQNSFDVILIDTAGRRHNDQRLMGSLEKFTKAT 459 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV---AGTTGLIMTKMDGTAR-GGGLIPI 278 K LD + QV +A G ++L Q + F A G I++K+D + G ++ + Sbjct: 460 K-LDK-----IFQVAEALVGTDSLAQAKHFQASLYHRPLDGFIISKVDTVGQLVGVMVGM 513 Query: 279 VVTHKIPVYFLGVGEGINDL 298 V ++P+ F+G+G+ +DL Sbjct: 514 VYAVRVPIIFVGIGQTYSDL 533 >gi|46908032|ref|YP_014421.1| signal recognition particle protein [Listeria monocytogenes serotype 4b str. F2365] gi|47093840|ref|ZP_00231584.1| signal recognition particle protein [Listeria monocytogenes str. 4b H7858] gi|226224404|ref|YP_002758511.1| signal recognition particle protein Ffh [Listeria monocytogenes Clip81459] gi|254826157|ref|ZP_05231158.1| signal recognition particle protein [Listeria monocytogenes FSL J1-194] gi|254933273|ref|ZP_05266632.1| signal recognition particle protein [Listeria monocytogenes HPB2262] gi|254994058|ref|ZP_05276248.1| hypothetical protein LmonocytoFSL_14589 [Listeria monocytogenes FSL J2-064] gi|255521154|ref|ZP_05388391.1| hypothetical protein LmonocFSL_08006 [Listeria monocytogenes FSL J1-175] gi|300763886|ref|ZP_07073883.1| signal recognition particle protein [Listeria monocytogenes FSL N1-017] gi|46881302|gb|AAT04598.1| signal recognition particle protein [Listeria monocytogenes serotype 4b str. F2365] gi|47017781|gb|EAL08570.1| signal recognition particle protein [Listeria monocytogenes str. 4b H7858] gi|225876866|emb|CAS05575.1| Putative signal recognition particle protein Ffh [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293584833|gb|EFF96865.1| signal recognition particle protein [Listeria monocytogenes HPB2262] gi|293595397|gb|EFG03158.1| signal recognition particle protein [Listeria monocytogenes FSL J1-194] gi|300515622|gb|EFK42672.1| signal recognition particle protein [Listeria monocytogenes FSL N1-017] gi|328466157|gb|EGF37314.1| signal recognition particle protein [Listeria monocytogenes 1816] gi|332312242|gb|EGJ25337.1| Signal recognition particle [Listeria monocytogenes str. Scott A] Length = 450 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 109/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K +L A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ + +D +IIDTAGRLH + LM + ++ + Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEI------ 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ TGQ+A+ + F+ TG+++TK+DG RGG + I P+ Sbjct: 213 ATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ GE + LE F ++ I G D Sbjct: 273 FIATGEKMEALETFHPDRMASRILGMGD 300 >gi|189183745|ref|YP_001937530.1| signal recognition particle protein [Orientia tsutsugamushi str. Ikeda] gi|189180516|dbj|BAG40296.1| signal recognition particle protein [Orientia tsutsugamushi str. Ikeda] Length = 450 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 78/268 (29%), Positives = 134/268 (50%), Gaps = 15/268 (5%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + V + + ++ K ++V SV Q V+ +S+ + K+L Sbjct: 38 LLEADVSLVVIKDFINNVVEKAKGQEVLRSVTPGQMVIKIISDEMIKVLSSSETEQALRI 97 Query: 108 SHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P V I+++G+ G GKTT KL+ K++ KVM+ + D +R AA +QL+ R Sbjct: 98 EFEPPVNIMMIGLQGSGKTTTTAKLAMKLAKKNKKVMVVSLDIYRPAAREQLETLV-RNH 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKV--DVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + I S+ A +AK + DV+I DTAGRLH + ++ + + ++ Sbjct: 157 ETILSLPIVSNENVFQIIARSTKEAKLLGCDVVIYDTAGRLHIDEPMLQELSNIKEII-- 214 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P +L V+D+ GQ ++ F+ +G+++TK+DG +RGG + I Sbjct: 215 ----TPKEILLVVDSLIGQESVNVANQFNQTLNISGVVLTKIDGDSRGGAALSIKYVTGK 270 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITG 312 P+ FLG GE NDLE F + ++ I G Sbjct: 271 PIKFLGTGEKTNDLEEFHPERIASRILG 298 >gi|154302571|ref|XP_001551695.1| hypothetical protein BC1G_09862 [Botryotinia fuckeliana B05.10] gi|150855351|gb|EDN30543.1| hypothetical protein BC1G_09862 [Botryotinia fuckeliana B05.10] Length = 660 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 86/283 (30%), Positives = 137/283 (48%), Gaps = 40/283 (14%) Query: 49 LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQ-RVLYDVSELIHKMLMP----- 98 +ED L+R ++ A ++ E EL+ + SVQ R+ + + K+L P Sbjct: 369 MEDHLLRKNVAREAAMRLCEGVERELIGVKTGNFESVQTRIATAMEASLRKILTPTSSLD 428 Query: 99 --------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 +S P RP+V+ +VGVNGVGK+T + K+ + KV++ A DTF Sbjct: 429 LLREIDSIVSPPALSLKKKRPYVMSIVGVNGVGKSTNLSKICYFLLQNKYKVLVVACDTF 488 Query: 151 RSAAIDQLKIWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIID 200 RS A++QL + R + E G DAA +A ++ A + DV++ID Sbjct: 489 RSGAVEQLAVHV-RNLKELTTREGGQVELYQKGYGKDAANVAKDSVSFAAQEGYDVVLID 547 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258 TAGR HN+ LM+ + K + + P +L V +A G +++ Q F+A G Sbjct: 548 TAGRRHNDQRLMSSLEKFAKFAQ------PDKILMVGEALVGTDSVAQARNFNAAFGQGR 601 Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 G I++K D G L+ +V +PV F+GVG+ +DL Sbjct: 602 SLDGFIISKCDTVGDMVGTLVSMVHATNVPVLFVGVGQHYSDL 644 >gi|255026961|ref|ZP_05298947.1| hypothetical protein LmonocytFSL_12638 [Listeria monocytogenes FSL J2-003] Length = 450 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 109/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K +L A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ + +D +IIDTAGRLH + LM + ++ + Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEI------ 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ TGQ+A+ + F+ TG+++TK+DG RGG + I P+ Sbjct: 213 ATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ GE + LE F ++ I G D Sbjct: 273 FIATGEKMEALETFHPDRMASRILGMGD 300 >gi|289670362|ref|ZP_06491437.1| signal recognition particle protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 373 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/195 (35%), Positives = 105/195 (53%), Gaps = 13/195 (6%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +IL+ G+ G GKTT +GKL+K + + K VM+ + D +R AAI+QLK A++ F Sbjct: 15 PAIILMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLF 74 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + S+ + A A+ VDVL++DTAGRL ++ +M I + HA Sbjct: 75 LASDASQKPVDIVRAAISDARKSFVDVLLVDTAGRLAIDAAMMDEIKAL---------HA 125 Query: 230 ---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA TGQ+A + F TG+++TK DG ARGG + + P+ Sbjct: 126 AVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKTDGDARGGAALSVRYITGKPI 185 Query: 287 YFLGVGEGINDLEPF 301 F+G GE + L+ F Sbjct: 186 KFVGTGEKTDGLDVF 200 >gi|313681624|ref|YP_004059362.1| signal recognition particle subunit ffh/srp54 (srp54) [Sulfuricurvum kujiense DSM 16994] gi|313154484|gb|ADR33162.1| signal recognition particle subunit FFH/SRP54 (srp54) [Sulfuricurvum kujiense DSM 16994] Length = 448 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 80/282 (28%), Positives = 137/282 (48%), Gaps = 13/282 (4%) Query: 28 LKEGITDIISSRRLDDGVRE------ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81 L E T I R D + EL+ L+++D+ V +++++ + + V Sbjct: 5 LTESFTSAIRKIRFHDDEKALTKALGELKKALLKADVNHKVVKELIDSVEIQTKQNGVGK 64 Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 + L + + ++ +L K P VIL+ G+ G GKTT GKL+ + K Sbjct: 65 DQFLDALRKSLYALLDVKGKSGFVYAPVAPTVILMTGLQGSGKTTTTGKLANWLKTRQKK 124 Query: 142 -VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 V++ A D R AA++QL+ + + + + A + A+ VDV++ID Sbjct: 125 RVLVVAADLQRLAAVEQLRQVCGAIDVELYADDATKNPVEVVKAALEHAKKVLVDVVLID 184 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL + LM + ++ V PH + V D+ +GQ+A+R F+ G G Sbjct: 185 TAGRLAIDDELMGELAEVKAVAN------PHEIFYVADSLSGQDAVRTAATFNEKIGIDG 238 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 +I+TK DG ++GG + I ++P+ F+G GE + DLE F+ Sbjct: 239 VILTKYDGDSKGGVALGIASQIQVPLRFIGAGEKMEDLEIFL 280 >gi|68467725|ref|XP_722021.1| hypothetical protein CaO19.11434 [Candida albicans SC5314] gi|46443968|gb|EAL03246.1| hypothetical protein CaO19.11434 [Candida albicans SC5314] Length = 535 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 84/289 (29%), Positives = 144/289 (49%), Gaps = 33/289 (11%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA-KDVSVQRVLYDVSELIHKMLMP-LS 100 D V ++ + LI +I +A I++++ TK + K V++ +++ + K+L P +S Sbjct: 245 DEVSKKFREQLITKNITPGIATTIIDKIKTKLSSNKKVTMAVYKQALTDELTKILTPNVS 304 Query: 101 KPF------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 N + + RP+VI VVGVNGVGK+T + KL+ L V++ A DTFRS A Sbjct: 305 TDLLHDIKRNAELNTRPYVISVVGVNGVGKSTNLAKLAFWFLQHNLNVLICACDTFRSGA 364 Query: 155 IDQLKIWA------------DRTSADFVCSEIGS--DAAALAYEAFKQAQAKKVDVLIID 200 ++QLK+ ++ D GS A +A + A+ K D+++ID Sbjct: 365 VEQLKVHVTNLNRLNEASTNTKSRIDIFEKGYGSGDHVVQTAKQAVQYAEENKFDIVLID 424 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGR H+N+ LMA + K D P+ ++ V +A G +++ Q F+ G Sbjct: 425 TAGRTHSNAKLMAPLKKF------GDAANPNKIIMVGEALVGTDSVEQATNFNKAFGNKR 478 Query: 261 ----LIMTKMDGTAR-GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 I++K+D G +I +V+ +P+ F+G G+ D++ K Sbjct: 479 TLDFFIISKVDTVGDLVGTMINMVMATNVPILFVGTGQTYTDIKRLSVK 527 >gi|309811467|ref|ZP_07705249.1| signal recognition particle protein [Dermacoccus sp. Ellin185] gi|308434518|gb|EFP58368.1| signal recognition particle protein [Dermacoccus sp. Ellin185] Length = 538 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 84/309 (27%), Positives = 146/309 (47%), Gaps = 37/309 (11%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +LT FA+ K + +DI ++ R ++ L+ +D+ + V ++ + + Sbjct: 8 RLTATFANLKGKGRLTESDINATIR-------DIRMALLDADVALPVVKQFTRGVRERAL 60 Query: 76 AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +VS Q+V+ V+E + +L ++ + + P VI++ G+ G GKTT GK Sbjct: 61 GAEVSQALNPGQQVVKIVNEELVAILGGQTRSIQYAKTG-PTVIMLAGLQGSGKTTFAGK 119 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------------- 176 L++++ D G +L A D R A+ QL++ +R E G+ Sbjct: 120 LARRLRDEGHFPVLVAADLQRPNAVRQLEVVGERAGVPVFAPERGNEGGHDAVSETGEGT 179 Query: 177 ----DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 D +A QA+ ++ DV+I+DTAGRL + LM + ++ P+ Sbjct: 180 RSHGDPVWVAQAGVAQAKVRQYDVVIVDTAGRLAVDENLMQQAADIREAIQ------PNE 233 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 VL V+DA GQ A+ F TG++++K+DG ARGG + + P+ F G Sbjct: 234 VLFVIDAMIGQAAIETAIAFQDGVDFTGVVLSKLDGDARGGAALSVASVTGRPIMFASTG 293 Query: 293 EGINDLEPF 301 EG+ D+E F Sbjct: 294 EGVKDIEVF 302 >gi|290977140|ref|XP_002671296.1| predicted protein [Naegleria gruberi] gi|284084864|gb|EFC38552.1| predicted protein [Naegleria gruberi] Length = 454 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 104/204 (50%), Gaps = 6/204 (2%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 + +G+ G GKTT K ++ G + L DTFR+ A++QL+ A + F Sbjct: 82 ELFFEIGLQGAGKTTTCTKYARYYQKKGFRSALVCADTFRAGALEQLRQNAAKVQIAFYG 141 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 E ++ +A + +Q + +K +V+I+DT+GR L + ++ + + P Sbjct: 142 DEYETNPVKIAKDGVEQFKNEKYEVIIVDTSGRHMQEESLFEEMEQVSQAVN------PD 195 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 V+ V+D++ GQ+ Q F + +I+TK+DG A+GGG + V K P+ F+G Sbjct: 196 EVIFVMDSSIGQSVKEQAAAFKSRVSVGSVIVTKLDGHAKGGGALSAVAATKSPITFIGT 255 Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315 GE ++ + F A+ F + + G D Sbjct: 256 GEDFDNFQQFNAESFVSRLLGQGD 279 >gi|255082426|ref|XP_002504199.1| type II secretory pathway family [Micromonas sp. RCC299] gi|226519467|gb|ACO65457.1| type II secretory pathway family [Micromonas sp. RCC299] Length = 650 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 69/201 (34%), Positives = 107/201 (53%), Gaps = 18/201 (8%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 RP+ I+ VGVNGVGK+T + K++ + +KVM+AA DTFR+ A++QL+ R Sbjct: 440 RPYTIVFVGVNGVGKSTNLSKVAYWLLQHDVKVMIAACDTFRAGAVEQLRTHCKRLGVPL 499 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 D A +A EA K AQ + D +++DTAGR+ +N LM + K+I + + Sbjct: 500 FERGYEKDPANVASEAIKAAQRQGCDAVLVDTAGRMQDNEPLMRALSKLINM------ND 553 Query: 230 PHSVLQVLDATTGQNALRQVEMF-------HAVAGTT----GLIMTKMDG-TARGGGLIP 277 P L V +A G +A+ Q+ F +A A T G++++K D + G + Sbjct: 554 PDLTLFVGEALVGNDAVDQLSKFNERLADLNANARRTKLIDGIVLSKFDTIDDKVGAALS 613 Query: 278 IVVTHKIPVYFLGVGEGINDL 298 +V T PV F+G G+ DL Sbjct: 614 MVYTSGAPVVFVGCGQTYTDL 634 >gi|160943022|ref|ZP_02090260.1| hypothetical protein FAEPRAM212_00499 [Faecalibacterium prausnitzii M21/2] gi|158445716|gb|EDP22719.1| hypothetical protein FAEPRAM212_00499 [Faecalibacterium prausnitzii M21/2] Length = 451 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 83/275 (30%), Positives = 138/275 (50%), Gaps = 16/275 (5%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ VA+ ++ + ++V Q+V+ V+E + LM S+ Sbjct: 34 EVRMALLEADVNYKVAKDFCAKVSERAMGQEVMESLTPAQQVVKIVNEELVA-LMGGSEA 92 Query: 103 FNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 + ++ VI++ G+ G GKTT KL+K G + ML A D +R AAIDQL++ Sbjct: 93 ARLNIKNKGQTVIMLCGLQGNGKTTHAAKLAKFYIKQGRRPMLVACDIYRPAAIDQLQVV 152 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 + A V + G+ +A +A A+ D++I+DTAGRL + +LM + Sbjct: 153 GKQAGAP-VFTLPGAKPPEIARKALAHAKDYGNDIVILDTAGRLQIDEVLM-------QE 204 Query: 222 LKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 L + P L V+DA GQ+A+ + F+ G G+I+TK DG RGG + ++ Sbjct: 205 LVDIKAAVPVDETLLVVDAMAGQDAVNVAKTFNETVGVDGIILTKTDGDTRGGAALSVLA 264 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F G GE ++DL+ F ++ I G D Sbjct: 265 VTGKPIKFQGTGEKLDDLDVFHPDRMASRILGMGD 299 >gi|289435144|ref|YP_003465016.1| signal recognition particle protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171388|emb|CBH27932.1| signal recognition particle protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 450 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 109/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K +L A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A ++A+ +D +IIDTAGRLH + LM + ++ + Sbjct: 159 PVFSLGDQVSPVEIAKQAIEKAKEDHLDYVIIDTAGRLHIDETLMDELKQVKEIAN---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ TGQ+A+ E F+ TG+++TK+DG RGG + I P+ Sbjct: 215 --PTEILLVVDSMTGQDAVNVAESFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ GE + +E F ++ I G D Sbjct: 273 FVATGEKMEAIETFHPDRMASRILGMGD 300 >gi|163869270|ref|YP_001610526.1| signal recognition particle protein [Bartonella tribocorum CIP 105476] gi|161018973|emb|CAK02531.1| signal recognition particle protein [Bartonella tribocorum CIP 105476] Length = 520 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 71/209 (33%), Positives = 110/209 (52%), Gaps = 13/209 (6%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRT---S 166 P VI+++G+ G GKTT KL+K+ +D KV++A+ DT R AA +QL+ ++ S Sbjct: 100 PVVIMMIGLQGSGKTTTTAKLAKRFTDKHNKKVLMASLDTRRPAAQEQLRQLGEQAKLAS 159 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + ++ D A+ A +A A+ DVL++DTAGR H + LM + ++ Sbjct: 160 LPIIAGQLPVDIASRAVQA---AKLGGYDVLLLDTAGRNHIDEALMLELAEIKAC----- 211 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 PH ++ V D+ TGQ+A+ F G TG+I+T+MD RGG + + P+ Sbjct: 212 -SLPHEIMLVADSLTGQDAVHLARSFDERVGITGIILTRMDSDGRGGAALSMRAVTGKPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G GE I DLE F + I G D Sbjct: 271 KAIGTGEKIEDLEEFHPSRIADRILGMGD 299 >gi|313637361|gb|EFS02841.1| signal recognition particle protein [Listeria seeligeri FSL S4-171] Length = 450 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 109/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K +L A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A ++A+ +D +IIDTAGRLH + LM + ++ + Sbjct: 159 PVFSLGDQVSPVEIAKQAIEKAKEDHLDYVIIDTAGRLHIDETLMDELKQVKEIAN---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ TGQ+A+ E F+ TG+++TK+DG RGG + I P+ Sbjct: 215 --PTEILLVVDSMTGQDAVNVAESFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ GE + +E F ++ I G D Sbjct: 273 FVATGEKMEAIETFHPDRMASRILGMGD 300 >gi|163790804|ref|ZP_02185229.1| signal recognition particle protein [Carnobacterium sp. AT7] gi|159873872|gb|EDP67951.1| signal recognition particle protein [Carnobacterium sp. AT7] Length = 437 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 101/206 (49%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT GKL+ + + + +L A D +R AAI QL+ + Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLASYLRKNQNKRPLLVAADIYRPAAIQQLETIGKQLDVPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 +A + ++A+A+ +D ++IDTAGRL + LM + + + Sbjct: 161 FSMGDQVSPVEIARQGIEKAKAEHLDFVLIDTAGRLQIDETLMQELSDIKETTQ------ 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P + V+DA TGQ A F TG+I+TK+DG RGG + I P+ F Sbjct: 215 PTEIFLVVDAMTGQEAANVAASFDEQLDITGVILTKLDGDTRGGAALSIRAVTGKPIKFT 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE ++ LEPF + I G D Sbjct: 275 GSGEKLDALEPFYPDRMANRILGMGD 300 >gi|257387282|ref|YP_003177055.1| GTP-binding signal recognition particle SRP54 G- domain protein [Halomicrobium mukohataei DSM 12286] gi|257169589|gb|ACV47348.1| GTP-binding signal recognition particle SRP54 G- domain protein [Halomicrobium mukohataei DSM 12286] Length = 468 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 83/281 (29%), Positives = 137/281 (48%), Gaps = 11/281 (3%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHK 94 IS ++D V+E ++ L+++D+ V + Q + + + ++ ++ D V ++++ Sbjct: 23 ISEEDIEDIVKE-IQRSLLQADVDVGLVQDLSDGIKSRALDEEPPAGTTPRDWVLRIVYE 81 Query: 95 MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 L+ L + + I++ G+ G GKTT K++ S GL+ + DT R A Sbjct: 82 ELVDLVGE-STEIPLENQTIMLAGLYGSGKTTTAAKMAWWFSKKGLRPAVIQTDTDRPGA 140 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 DQ K AD +F E +D +A E A + DV I+DTAGR N L+ Sbjct: 141 YDQSKQMADNAEVEFYGDEDSNDPVEIAREGL--AATEDADVRIVDTAGRDGLNEELIDQ 198 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 I ++ ++ P L V+DA GQ+A Q + F G G+ +TK+DGTA+GGG Sbjct: 199 IERIGAEVQ------PDRNLLVIDAAMGQSAKDQAQEFEDAIGIDGVAITKLDGTAKGGG 252 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + V + FLG GE + D+E F F + + G D Sbjct: 253 ALAAVDQTDSTIAFLGTGETVKDIERFEPSGFISRLLGMGD 293 >gi|310779168|ref|YP_003967501.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ilyobacter polytropus DSM 2926] gi|309748491|gb|ADO83153.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ilyobacter polytropus DSM 2926] Length = 447 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 106/208 (50%), Gaps = 6/208 (2%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 + P VI++ G+ G GKTT KL+K + G + L D +R AA+ QL++ ++ Sbjct: 97 AKNPTVIMLAGLQGAGKTTFAAKLAKFLKKKGERPYLVGADVYRPAAMKQLQVLGEQIDV 156 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 E DA + + A+ +I+DTAGRLH + LM + K I+ R Sbjct: 157 PVHIQEGSKDARGICSDGLNVAKENNATYVILDTAGRLHVDESLMEEL-KDIKKATR--- 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+DA GQ+A+ E F+ G+++TK+DG RGG + I P+ Sbjct: 213 --PQEILLVVDAMIGQDAVNLAESFNNSLNIDGVVLTKLDGDTRGGAALSIKAVVGKPIK 270 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G+GE I+D+E F + + I G D Sbjct: 271 FIGIGEKIDDIELFHPERLVSRILGMGD 298 >gi|254821193|ref|ZP_05226194.1| signal recognition particle protein [Mycobacterium intracellulare ATCC 13950] Length = 518 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 94/311 (30%), Positives = 147/311 (47%), Gaps = 23/311 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + + RL D E+ L+ +D+ + V + V + + Sbjct: 2 FESLSDRLTGALAGLRGKGRLTDADIEATTREIRLALLEADVSLPVVRAFVTRIKDRAKG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L ++ + + P V+++ G+ G GKT++ GKL Sbjct: 62 AEVSGALNPAQQVVKIVNEELIGILGGQTRQLAFAKTP-PTVVMLAGLQGSGKTSLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184 + + G +L A D R AA++QL++ +R G D A+A Sbjct: 121 AAWLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGESPGSGPGDPVAVAAA 180 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 +A AK DV+I+DTAGRL + LMA IR D P VL VLDA GQ+ Sbjct: 181 GIAEANAKHFDVVIVDTAGRLGIDDELMA-QAAAIR-----DAIDPDEVLFVLDAMIGQD 234 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ E F G TG+++TK+DG ARGG + + +P+ F GE + D + F Sbjct: 235 AVTTAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294 Query: 305 DFSAVITGCLD 315 S+ I G D Sbjct: 295 RMSSRILGMGD 305 >gi|146418701|ref|XP_001485316.1| hypothetical protein PGUG_03045 [Meyerozyma guilliermondii ATCC 6260] Length = 529 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 86/286 (30%), Positives = 140/286 (48%), Gaps = 30/286 (10%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-LSK 101 D V + D I +I A A+ I ++L + K V+++ ++ + K+L P +S Sbjct: 242 DEVSKTFTDQFISKNIAPATAKTITDKLNHELKGKKVTLKDYKRALTVELTKILTPNVST 301 Query: 102 PFNWDF-------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 +D + RP+VI VVGVNGVGK+T + KL+ L V++ A DTFRS A Sbjct: 302 DLLYDVKRNSSTSNSRPYVISVVGVNGVGKSTNLAKLAYWFLQNNLNVLICACDTFRSGA 361 Query: 155 IDQLKIWAD---------RTSADFVCSEI--GSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 ++QLK+ + T D G A A A + A A+ D+++IDTAG Sbjct: 362 VEQLKVHVNNLKRLNTTTNTKIDIFEKGYGGGDHVVATAKLAIEFAGAEGFDIVLIDTAG 421 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG--- 260 R H+N+ LMA + K D P+ ++ V +A G +++ Q F+ G Sbjct: 422 RTHSNAKLMAPLKKF------GDAANPNKIIMVGEALVGTDSVEQAVNFNNAFGNRRSLD 475 Query: 261 -LIMTKMDGTAR-GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 I++K+D G +I +V+ K+P+ F+G G+ D++ K Sbjct: 476 FFIISKVDTVGDLVGSMINMVMATKVPILFVGTGQVYTDIKRLSVK 521 >gi|145224761|ref|YP_001135439.1| signal recognition particle protein [Mycobacterium gilvum PYR-GCK] gi|315445091|ref|YP_004077970.1| signal recognition particle subunit FFH/SRP54 (srp54) [Mycobacterium sp. Spyr1] gi|145217247|gb|ABP46651.1| signal recognition particle subunit FFH/SRP54 (srp54) [Mycobacterium gilvum PYR-GCK] gi|315263394|gb|ADU00136.1| signal recognition particle subunit FFH/SRP54 (srp54) [Mycobacterium sp. Spyr1] Length = 535 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 91/326 (27%), Positives = 148/326 (45%), Gaps = 38/326 (11%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L ++ + RL D E+ L+ +D+ + V + + + + Sbjct: 2 FESLSDRLTGALSGLRGKGRLTDADIDATAREIRLALLEADVSLPVVRAFISRIKDRAKG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L ++ + + P VI++ G+ G GKTT+ GKL Sbjct: 62 VEVSAALNPAQQVVKIVNEELVAILGGETRQLAF-ARNPPTVIMLAGLQGSGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------------- 175 +K + G +L A D R A++QL+I +R G Sbjct: 121 AKWLKAQGHTPLLVACDLQRPGAVNQLQIVGERAGVHVFAPHPGVSPAGETIEQMTAHAR 180 Query: 176 ------SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 D ++A +A++K DV+I+DTAGRL + LMA IR D Sbjct: 181 SETAGAGDPVSVAAAGLAEARSKLYDVVIVDTAGRLGIDQELMA-QAAAIR-----DAVN 234 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P +L VLDA GQ+A+ + F G TG+++TK+DG ARGG + + P+ F Sbjct: 235 PDEILFVLDAMIGQDAVTTADAFREGVGFTGVVLTKLDGDARGGAALSVREVTGQPILFA 294 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GE + D + F ++ I G D Sbjct: 295 SAGEKLEDFDVFHPDRMASRILGMGD 320 >gi|326422495|gb|EGD71892.1| putative signal recognition particle protein SRP54 [Candidatus Parvarchaeum acidophilus ARMAN-5_'5-way FS'] Length = 437 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 75/198 (37%), Positives = 102/198 (51%), Gaps = 14/198 (7%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P IL+VG+ G GKTT KL+ G +V+L DTFR AA QL+ + + + + Sbjct: 97 PFKILLVGLFGSGKTTTAAKLANYYRKRGYRVLLLGLDTFRPAAYQQLEQLSKQINVKIM 156 Query: 171 CSEIGSDAAALAYEAFKQAQA--KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 GSD +A K A K D++I D+AGR IL + K I+ ++ D Sbjct: 157 GG--GSDP----IKAIKSAMGSFKNFDIIIADSAGR----DILDKELIKEIKGIR--DTL 204 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P++V V+ A GQNA QV+ FH + +I+TK DGTA GGG + V F Sbjct: 205 KPNNVTLVIPADLGQNASVQVKGFHELLDINNIILTKTDGTANGGGALTAAYISGAKVTF 264 Query: 289 LGVGEGINDLEPFVAKDF 306 +G GE IND E F K F Sbjct: 265 IGTGEKINDFEEFNPKKF 282 >gi|209882278|ref|XP_002142576.1| signal recognition particle receptor subunit alpha [Cryptosporidium muris RN66] gi|209558182|gb|EEA08227.1| signal recognition particle receptor subunit alpha, putative [Cryptosporidium muris RN66] Length = 519 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 65/190 (34%), Positives = 107/190 (56%), Gaps = 14/190 (7%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 + I+ +GVNGVGK+T + K+ + + G LKVM+ A DTFR+ AI+QLK A+ Sbjct: 317 YSIVFLGVNGVGKSTNLAKVCYYLKNKGNLKVMIVACDTFRAGAIEQLKTHANCLDVYLY 376 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 G DAA +A +A A+ K D+++IDTAGR+ +N LM + K++ + + P Sbjct: 377 ERGYGKDAAFIAKDAILYAKENKYDIVLIDTAGRMQDNVPLMKSLAKLVMI------NNP 430 Query: 231 HSVLQVLDATTGQNALRQVEMF------HAVAGTTGLIMTKMDGT-ARGGGLIPIVVTHK 283 + V+ V +A G +A+ Q++ F HA G+++TK D + G + +V + Sbjct: 431 NLVIFVGEALVGNDAVNQLQTFNKFLIDHANRPIDGILLTKFDTVDDKIGAALSMVYSTG 490 Query: 284 IPVYFLGVGE 293 P+ F+G G+ Sbjct: 491 QPIIFIGTGQ 500 >gi|115522355|ref|YP_779266.1| signal recognition particle protein [Rhodopseudomonas palustris BisA53] gi|115516302|gb|ABJ04286.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rhodopseudomonas palustris BisA53] Length = 510 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 108/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P I++VG+ G GKTT KL+++++ KV++A+ D +R AA++QL + D Sbjct: 100 PVPIMMVGLQGSGKTTTTAKLARRLTQRDKRKVLMASLDVYRPAAMEQLAVLGRDLEIDT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + IG + +A A + A+ DVL++DTAGR + +MA ++ V Sbjct: 160 LPIVIGQKPSQIASRALEAAKLGGYDVLLLDTAGRTTLDDEMMAEAAEIKAVAN------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH VL V D+ TGQ+A+ F G TG+++T++DG RGG + + P+ + Sbjct: 214 PHEVLLVADSLTGQDAVNLARAFDTKVGLTGIVLTRIDGDGRGGAALSMRAVTGKPIKLM 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE + LE F ++ I G D Sbjct: 274 GTGEKTDALEDFHPSRIASRILGMGD 299 >gi|158287925|ref|XP_309798.4| AGAP010894-PA [Anopheles gambiae str. PEST] gi|157019422|gb|EAA05506.5| AGAP010894-PA [Anopheles gambiae str. PEST] Length = 655 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 86/293 (29%), Positives = 140/293 (47%), Gaps = 41/293 (13%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP--- 98 ++L D LI ++ +AQK+ + + K + D V ++E + ++L P Sbjct: 361 DKLRDHLIGKNVASDIAQKLCDSVAGKLEGRVIGTFDTIATTVRNTLTEALVQILSPKRR 420 Query: 99 ---LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 L + RP V+ GVNGVGK+T + K+ + + L V++AA DTFR+ A+ Sbjct: 421 VDILRDCLEAKRAGRPFVMSFCGVNGVGKSTNLAKICFWLIENNLSVLIAACDTFRAGAV 480 Query: 156 DQLKIW-------------ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +QL+ R+ G DAA +A EA + A K+DV++IDTA Sbjct: 481 EQLRTHMRHLNALHPAERHGGRSMVQLYEKGYGKDAAGIAMEAIRYANDSKIDVVLIDTA 540 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259 GR+ +N LM + K+I+V + P VL V +A G A+ Q+ F+ A+A + Sbjct: 541 GRMQDNEPLMRALAKLIKV------NEPDLVLFVGEALVGNEAVDQLVKFNQALADYSSS 594 Query: 260 -------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 G+++TK D + G I + P+ F+G G+ DL+ AK Sbjct: 595 ERPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKALNAK 647 >gi|254455437|ref|ZP_05068866.1| signal recognition particle protein [Candidatus Pelagibacter sp. HTCC7211] gi|207082439|gb|EDZ59865.1| signal recognition particle protein [Candidatus Pelagibacter sp. HTCC7211] Length = 452 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 87/329 (26%), Positives = 158/329 (48%), Gaps = 33/329 (10%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 LT F LK+ + ++ ++D+G+R + L+ +D+ + VA++ +E + Sbjct: 1 MFENLTNKFEEIFSSLKKAPS--LNEAQVDEGLRS-IRQALLEADVTLEVAKEFIENVKP 57 Query: 73 KRYAKDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 K +++ V +++YD EL++ +L + N + + P +++VG+ G GK Sbjct: 58 KVLGQEIIRSTSPGDMVVKIVYD--ELVN-LLGETNNEINLN-AVPPVPMMLVGLQGSGK 113 Query: 125 TTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 TT KL+K + ++ KVM+ + D +R AA +QL+ ++ + + G + Sbjct: 114 TTTTAKLAKYLETNKKKKVMMVSLDIYRPAAQEQLRSLGEQNNILTLPIIEGQQPTDICQ 173 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 A A ++++ DTAGR + +M+ I ++ V+K P V D+ TGQ Sbjct: 174 RAISAANLNGAEIILFDTAGRTQIDLQMMSEIKQIESVIK------PTETFLVADSLTGQ 227 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 A + F +G+I+T+ DG ARGG + + +P+ FLG+GE I++LE F Sbjct: 228 VAAAVAKEFKNTVSLSGIILTRADGDARGGAAVSMKYVSNVPIKFLGIGEKIDNLEVFHP 287 Query: 304 KDFSAVITG-----------CLDYGEEKI 321 + I G D GEE I Sbjct: 288 DRIANRILGMGDIVSLVEKAAQDLGEENI 316 >gi|228469419|ref|ZP_04054433.1| signal recognition particle protein [Porphyromonas uenonis 60-3] gi|228309103|gb|EEK17733.1| signal recognition particle protein [Porphyromonas uenonis 60-3] Length = 446 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 84/283 (29%), Positives = 133/283 (46%), Gaps = 23/283 (8%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKM 95 V E L+D+ L+ +D+ VA+ +++ K Q VL V+ +++H Sbjct: 27 VAETLKDVRRALLDADVNYNVARDFTDQVKEKALG-----QNVLTAVNPGQMMVKIVHDE 81 Query: 96 LMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRS 152 L L S+ + + P +IL+ G+ G GKTT GKL+ + K +L A D +R Sbjct: 82 LATLMGSEAVSVNLKGSPAIILMSGLQGSGKTTFSGKLANMLQKQEQRKPLLVACDVYRP 141 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AAI QL + ++ D +A A AQ + +D +IIDTAGRL + +M Sbjct: 142 AAIQQLHVLGEQIGVPVYSEPESKDPVQIARNAIAHAQQEGLDTVIIDTAGRLAVDEEMM 201 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 I + ++ P L V+D+ TGQ+A+ F G+I+TK+DG +RG Sbjct: 202 NEISSIKEAIR------PDETLFVVDSMTGQDAVNTAAEFDKRLDFDGVILTKLDGDSRG 255 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + I P+ F+G GE + L+ F + I G D Sbjct: 256 GAALSIRSVVNKPIKFVGTGEKMEALQVFHPSRMADRILGMGD 298 >gi|193735096|gb|ACF20057.1| regulatory protein [Neisseria gonorrhoeae] Length = 140 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 79/118 (66%), Gaps = 1/118 (0%) Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 + E ++ ++ PL KP + P VI++ G+NG GKTT IGKL+K G V+LAAG Sbjct: 22 LKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAG 81 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 DTFR+AA +QL+ W +R + V S+ D+AA+ ++A + A+A+ +D+++ DTAGRL Sbjct: 82 DTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRL 138 >gi|88803314|ref|ZP_01118840.1| signal recognition particle protein [Polaribacter irgensii 23-P] gi|88780880|gb|EAR12059.1| signal recognition particle protein [Polaribacter irgensii 23-P] Length = 442 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 72/262 (27%), Positives = 136/262 (51%), Gaps = 16/262 (6%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML------MPLS 100 +E+ L+ +D+ +A++ +++ T+ +DV + +L+ K++ + Sbjct: 32 KEVRRALLDADVNFKIAKEFTKKVQTQALGQDV---LTTLNPGQLMIKLVKDELTVLMGG 88 Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLK 159 + + + P +IL+ G+ G GKTT GKL+ + K V+L D +R AAI+QL+ Sbjct: 89 ETVGVNLAGSPTIILMSGLQGSGKTTFSGKLANFLKTKKSKEVLLVGCDVYRPAAINQLQ 148 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 + + + ++ ++ A K A+A +V+IIDTAGRL + +M I ++ Sbjct: 149 VVGAQIGVEVYAEVDNNNPVEISKNAVKYAKANGKNVVIIDTAGRLAVDEEMMKEISEIH 208 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 + ++ P L V+DA TGQ+A+ + F+ + G+++TK+DG RGG + I Sbjct: 209 KTIQ------PQETLFVVDAMTGQDAVNTAKAFNDILNFDGVVLTKLDGDTRGGAALSIK 262 Query: 280 VTHKIPVYFLGVGEGINDLEPF 301 P+ F+G GE ++ L+ F Sbjct: 263 SVVNKPIKFIGTGEKMDALDVF 284 >gi|4538523|emb|CAB39371.1| ftsY [Corynebacterium glutamicum] Length = 135 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 54/137 (39%), Positives = 87/137 (63%), Gaps = 2/137 (1%) Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 D A++A++A + ++ DV+++DTAGRLH ++ LM +GK+ RV+++ VL Sbjct: 1 GDPASIAFDAVAKGVERQADVVLVDTAGRLHTSTGLMDQLGKVKRVVEK--KAVVDEVLL 58 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 VLDAT GQN ++Q +F V TG+++TK+DGTA+GG + + +PV +G+GEG Sbjct: 59 VLDATVGQNGMQQARIFREVVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGA 118 Query: 296 NDLEPFVAKDFSAVITG 312 +DL PF + F + G Sbjct: 119 DDLAPFEVEGFVDALLG 135 >gi|116582914|gb|ABK00078.1| regulatory protein [Neisseria gonorrhoeae] Length = 140 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 79/118 (66%), Gaps = 1/118 (0%) Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 + E ++ ++ PL KP + P VI++ G+NG GKTT IGKL+K G V+LAAG Sbjct: 22 LKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAG 81 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 DTFR+AA +QL+ W +R + V S+ D+AA+ ++A + A+A+ +D+++ DTAGRL Sbjct: 82 DTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRL 138 >gi|239917431|ref|YP_002956989.1| signal recognition particle subunit FFH/SRP54 (srp54) [Micrococcus luteus NCTC 2665] gi|281414079|ref|ZP_06245821.1| signal recognition particle protein [Micrococcus luteus NCTC 2665] gi|239838638|gb|ACS30435.1| signal recognition particle subunit FFH/SRP54 (srp54) [Micrococcus luteus NCTC 2665] Length = 528 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 90/317 (28%), Positives = 148/317 (46%), Gaps = 31/317 (9%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +LT F S K + DI D E+ L+ +D+ V V ++ + ++ + Sbjct: 8 RLTATFRSLKGKGRLSEADI-------DATAREIRRALLDADVAVPVVRQFIAQIKERAL 60 Query: 76 AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + +V+ Q+V+ V+E + +L ++ + VI++VG+ G GKTT+ GK Sbjct: 61 SAEVAQALNPGQQVVKIVNEELVGILGGETRRIQHAKTG-TTVIMLVGLQGAGKTTLAGK 119 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------SDAAAL 181 L+ + G +L A D R A+ QL++ +R G D + Sbjct: 120 LAHLLKSQGHTPLLVACDLQRPNAVKQLQVGGERAGVPVYAPHPGVSSEFEAATGDPVQV 179 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 A + +A K DV+IIDTAGRL ++ LM + + P VL V+DA Sbjct: 180 ARDGVAEANTKYHDVVIIDTAGRLGVDAELMQQAADIRAAVD------PDEVLFVIDAMI 233 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQ+A+ + F+ G TG+++TK+DG ARGG + + P+ F GEG+ D E F Sbjct: 234 GQDAVATAQAFNEGVGFTGVVLTKLDGDARGGAALSVRHVTGKPIMFASTGEGLKDFEVF 293 Query: 302 VAKDFSAVITGCLDYGE 318 ++ I LD G+ Sbjct: 294 HPDRMASRI---LDMGD 307 >gi|167043737|gb|ABZ08429.1| putative SRP54-type protein, GTPase domain protein [uncultured marine crenarchaeote HF4000_APKG3B16] Length = 441 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 83/300 (27%), Positives = 151/300 (50%), Gaps = 23/300 (7%) Query: 28 LKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRY-------- 75 L+ I I++S +D+ + +EL + L++SD+ V + +I + + ++ Sbjct: 9 LRAAIKKIVNSSGVDEELIKELSKDVQRSLLQSDVNVKLVFEITKNIESRSLNEKPPPGL 68 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 ++ + ++LYD EL L+ F++ S + + +L++G+ G GKTTV KL++ + Sbjct: 69 SRKDHIVKILYD--ELAK--LLGNDTEFHFK-SGKINKVLLLGIQGSGKTTVASKLARFL 123 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 S G +V + DTFR A+ QL+ +++ + E D+ + K ++ +D Sbjct: 124 SKQGYRVGVIGADTFRPGALVQLRTMCEKSDVEVYGDEKNKDSPQVVKNGLKHFESSNLD 183 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 +++IDTAGR L+ + ++ + +P L V+D T GQ Q E FH + Sbjct: 184 IILIDTAGRHKEEKDLLDEMKQINKAA------SPDLALLVVDGTIGQQCHAQAEAFHKI 237 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G+I+TK+D +A+GGG + V ++G GE I+DLE F F + G D Sbjct: 238 VPVGGIIITKLDSSAKGGGALAASAATGAQVMYIGTGERIDDLETFSPTRFVGRLLGMGD 297 >gi|170038031|ref|XP_001846857.1| signal recognition particle receptor subunit alpha [Culex quinquefasciatus] gi|167881443|gb|EDS44826.1| signal recognition particle receptor subunit alpha [Culex quinquefasciatus] Length = 625 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 84/293 (28%), Positives = 139/293 (47%), Gaps = 41/293 (13%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP--- 98 ++L+D LI ++ ++ K+ E + K K D V ++E + ++L P Sbjct: 331 DKLKDHLISKNVATDISHKLCESVAVKLEGKVLGTFDTIAATVKNTLTEALVQILSPKRR 390 Query: 99 ---LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 L + RP+V+ GVNGVGK+T + K+ + + V++AA DTFR+ A+ Sbjct: 391 VDILRDCMEAKKNKRPYVMSFCGVNGVGKSTNLAKICFWLIENNFNVLIAACDTFRAGAV 450 Query: 156 DQLKIW-------------ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +QL+ R+ G DAA +A EA + A VD+++IDTA Sbjct: 451 EQLRTHMRHLNALHPPEKHGGRSMVQLYEKGYGKDAAGIAMEAIRHANDTGVDIVLIDTA 510 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259 GR+ +N LM + K+I+V + P VL V +A G A+ Q+ F+ A+A + Sbjct: 511 GRMQDNEPLMRALAKLIKV------NEPDLVLFVGEALVGNEAVDQLVKFNQALADYSSN 564 Query: 260 -------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 G+++TK D + G I + P+ F+G G+ DL+ AK Sbjct: 565 ENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKKLNAK 617 >gi|320008298|gb|ADW03148.1| signal recognition particle protein [Streptomyces flavogriseus ATCC 33331] Length = 515 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 80/267 (29%), Positives = 133/267 (49%), Gaps = 15/267 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + + + + +VS Q+V+ V+E + +L Sbjct: 28 DATAREIRIALLEADVALPVVRAFIANIKERARGAEVSQALNPAQQVVKIVNEELVGILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + P VI++ G+ G GKTT+ GKL + G +L A D R A++Q Sbjct: 88 GETRRLRF-AKNPPTVIMLAGLQGAGKTTLAGKLGLWLKAQGHSPLLVACDLQRPNAVNQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R E G+ D A+A ++ + A+AK D++I+DTAGRL + LM Sbjct: 147 LSVVAERAGVAVYAPEPGNGVGDPVAVAKDSIEFAKAKVHDIVIVDTAGRLGIDEELMRQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P +L V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301 + I + F GE + D + F Sbjct: 261 ALSIAHVTGKQIMFASNGEKLEDFDAF 287 >gi|217964047|ref|YP_002349725.1| signal recognition particle protein [Listeria monocytogenes HCC23] gi|217333317|gb|ACK39111.1| signal recognition particle protein [Listeria monocytogenes HCC23] gi|307571383|emb|CAR84562.1| signal recognition particle protein [Listeria monocytogenes L99] Length = 450 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 109/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSAD- 168 P VI++VG+ G GKTT GKL+ + K +L A D +R AAI QL+ + Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPV 160 Query: 169 -FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 F+ ++ +A +A +A+ + +D +IIDTAGRLH + LM + ++ + Sbjct: 161 FFLGDQVSP--VEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEI------ 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ TGQ+A+ + F+ TG+++TK+DG RGG + I P+ Sbjct: 213 ATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ GE + LE F ++ I G D Sbjct: 273 FIATGEKMEALETFHPDRMASRILGMGD 300 >gi|315924205|ref|ZP_07920431.1| signal recognition particle protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315622607|gb|EFV02562.1| signal recognition particle protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 449 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 81/302 (26%), Positives = 147/302 (48%), Gaps = 21/302 (6%) Query: 28 LKEGITDIISSRR----LDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79 L E DI + R LD+ E++ L+ +D+ V ++ + + + +++ Sbjct: 7 LSEKFQDIFAGMRRKGKLDEADIKAANREIKLALLEADVNFKVVKRFTKAVSERAQGEEI 66 Query: 80 -----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 Q+ + V++ + ++L KP S ++ ++VG+ G GKTT GK++ Sbjct: 67 LKSLTPGQQYIKVVNDEMTRLLGGEIKPLELQKSDL-NIFMMVGLQGAGKTTTAGKIANL 125 Query: 135 M-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 + + LK +L A D +R AAIDQLK+ ++ + +A +A AQ + Sbjct: 126 LRKENKLKPLLVACDVYRPAAIDQLKVLGEQLDIPVYTMPGMKEPRIIANQAISYAQKQG 185 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +++I+DTAGRL + LM + + ++ P L V+D TGQ ++ + F Sbjct: 186 YNLVILDTAGRLQIDERLMRELMDIKELVH------PTETLLVVDGMTGQESVNVAKSFD 239 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 +G+++TK+DG RGG + + T P+ F+G GE ++DLE F ++ I G Sbjct: 240 DQLDISGVVLTKLDGDTRGGAALSVTYTTGKPIVFIGSGEKLSDLERFHPDRMASRILGM 299 Query: 314 LD 315 D Sbjct: 300 GD 301 >gi|328955639|ref|YP_004372972.1| signal recognition particle subunit FFH/SRP54 (srp54) [Coriobacterium glomerans PW2] gi|328455963|gb|AEB07157.1| signal recognition particle subunit FFH/SRP54 (srp54) [Coriobacterium glomerans PW2] Length = 493 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 70/205 (34%), Positives = 104/205 (50%), Gaps = 7/205 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P+VI++VG+ G GKTT KL+ + G +LAA D +R AA DQL Sbjct: 100 PNVIMLVGLQGSGKTTAAVKLAYLLKKQGRSPILAAADVYRPAAADQLSALGSEIEVPVF 159 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + G+D +A + ++A DV+I+DTAGRL + +M + R +K P Sbjct: 160 RGD-GADPIEIARGSIREAVDTMRDVVIVDTAGRLQIDEQMMQEAVDIKRAVK------P 212 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 +L V+DA TGQ+ + V F G+I++K+DG ARGGG + I P+ F+ Sbjct: 213 DQILMVVDAMTGQDIVNVVSTFAERTDFDGVIISKLDGDARGGGALSIRAVTGKPIKFVS 272 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 +GE + LE F + I G D Sbjct: 273 MGEKPDSLEVFYPDRMAKRILGMGD 297 >gi|313115226|ref|ZP_07800709.1| signal recognition particle protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310622455|gb|EFQ05927.1| signal recognition particle protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 451 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 82/275 (29%), Positives = 138/275 (50%), Gaps = 16/275 (5%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ VA+ ++ + ++V Q+V+ V+E + LM S+ Sbjct: 34 EVRMALLEADVNYKVAKDFCAKVSERAMGQEVMESLTPAQQVVKIVNEELVA-LMGGSEA 92 Query: 103 FNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 + ++ +I++ G+ G GKTT KL+K G + ML A D +R AAIDQL++ Sbjct: 93 ARLNIKNKGQTIIMLCGLQGNGKTTHAAKLAKYFIKQGRRPMLVACDIYRPAAIDQLQVV 152 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 + A V + G+ +A +A A+ D++I+DTAGRL + +LM + Sbjct: 153 GKQAGAP-VFTLPGAKPPEIAKKALAHAKDYGNDIVILDTAGRLQIDDVLM-------QE 204 Query: 222 LKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 L + P L V+DA GQ+A+ + F+ G G+I+TK DG RGG + ++ Sbjct: 205 LVDIKEAVPVDETLLVVDAMAGQDAVNVAKTFNEKVGIDGIILTKTDGDTRGGAALSVLA 264 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F G GE ++DL+ F ++ I G D Sbjct: 265 VTGKPIKFQGTGEKLDDLDVFHPDRMASRILGMGD 299 >gi|121608473|ref|YP_996280.1| signal recognition particle protein [Verminephrobacter eiseniae EF01-2] gi|121553113|gb|ABM57262.1| signal recognition particle subunit FFH/SRP54 (srp54) [Verminephrobacter eiseniae EF01-2] Length = 454 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P VIL+ G+ G GKTT KL+K + + KV+ +GD +R AAI+QL+ + Sbjct: 97 AQPPAVILMAGLQGAGKTTTTAKLAKYLIEKRKKKVLTVSGDVYRPAAIEQLQTVTRQAG 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 F S +A A A+ DVL++DTAGRL + +M I + L Sbjct: 157 GAFFPSLPEQKPLDIALAALDHARKHYFDVLLVDTAGRLAIDQAMMEEIKALHAALN--- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA GQ+A+ F TG+++TK+DG +RGG + + +P+ Sbjct: 214 ---PVETLFVVDAMQGQDAINTARAFREALPLTGIVLTKLDGDSRGGAALSVRQITGVPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F GV E ++ L+ F A+ + I G D Sbjct: 271 KFAGVSEKLDGLDVFDAERHAGRILGMGD 299 >gi|78042210|dbj|BAE46928.1| goadsporin biosynthetic protein [Streptomyces sp. TP-A0584] Length = 518 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 77/281 (27%), Positives = 139/281 (49%), Gaps = 15/281 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + ++++ + +VS Q+V+ V+E + +L Sbjct: 28 DATAREIRIALLEADVALPVVRAFIKQVKERALGAEVSGALNPAQQVIKIVNEELISILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + P VI++ G+ G GKTT+ GKL + +L A D R A++Q Sbjct: 88 GETRRLKYAKTG-PTVIMLAGLQGAGKTTLAGKLGHWLKQQKHTPLLVACDLQRPNAVNQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + ADR F E G+ D +A ++ + A+ ++ DV I+DTAGRL ++ +M Sbjct: 147 LNVVADRAGVAFYGPEPGNGVGDPVKVARDSIEYAKQRQYDVFIVDTAGRLGIDAEMMQQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + ++ P VL V+DA GQ+A+ + F TG++++K+DG ARGG Sbjct: 207 ASDIRAAVQ------PDEVLFVVDAMVGQDAVTTAQAFLDGVDFTGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + + F GE ++D + F ++ I G D Sbjct: 261 ALSVAHVTGRQIMFASNGEKVDDFDAFHPDRMASRILGMGD 301 >gi|326333682|ref|ZP_08199919.1| signal recognition particle protein [Nocardioidaceae bacterium Broad-1] gi|325948588|gb|EGD40691.1| signal recognition particle protein [Nocardioidaceae bacterium Broad-1] Length = 520 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 83/293 (28%), Positives = 145/293 (49%), Gaps = 19/293 (6%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 FA+ S +L +I RL D E+ L+ +D+ + V ++ V + + Sbjct: 2 FATLSDRLATTFKNIRGKGRLTDADIDATAREIRIALLEADVALPVVREFVARVKERARG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++VS Q+++ V++ + +L ++ + + P VI++ G+ G GKTT+ KL Sbjct: 62 EEVSQALNPAQQIVKIVNDELVTILGGETRRLRYAKTG-PTVIMLAGLQGAGKTTLAAKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188 + + + G +L A D R A++QL++ +R + G+ + +A +A ++ Sbjct: 121 ALWLKEQGKAPLLVAADLQRPNAVNQLQVNGERVGVPVYAPQPGNGVGNPVDVARDAVEE 180 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K DV+I+DTAGRL + LM + + P VL V+DA GQ+A+ Sbjct: 181 AKRKLHDVVIVDTAGRLGIDEELMKQAADIKAAVN------PDEVLFVVDAMIGQDAVNT 234 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F G G+++TK+DG ARGG + IV PV F GE + D + F Sbjct: 235 AQAFLDGVGYDGVVLTKLDGDARGGAALSIVQITGKPVMFASNGEKMTDFDLF 287 >gi|306836410|ref|ZP_07469388.1| cell division protein FtsY [Corynebacterium accolens ATCC 49726] gi|304567770|gb|EFM43357.1| cell division protein FtsY [Corynebacterium accolens ATCC 49726] Length = 136 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 55/136 (40%), Positives = 86/136 (63%), Gaps = 2/136 (1%) Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D A++A++A ++VDV+++DTAGRLH ++ LM +GK+ RV+++ VL V Sbjct: 1 DPASVAFDAVATGVEQQVDVVLVDTAGRLHTSTDLMDQLGKVKRVVEK--KTEVDEVLLV 58 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDAT GQN L Q +F V +G+++TK+DGTA+GG + + +PV +G+GEG + Sbjct: 59 LDATVGQNGLAQARIFREVVDISGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGAD 118 Query: 297 DLEPFVAKDFSAVITG 312 DL PF + F + G Sbjct: 119 DLAPFEVEGFVDALLG 134 >gi|289704592|ref|ZP_06501025.1| signal recognition particle protein [Micrococcus luteus SK58] gi|289558712|gb|EFD51970.1| signal recognition particle protein [Micrococcus luteus SK58] Length = 528 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 86/300 (28%), Positives = 140/300 (46%), Gaps = 28/300 (9%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +LT F S K + DI D E+ L+ +D+ V V ++ + ++ + Sbjct: 8 RLTATFRSLKGKGRLSEADI-------DATAREIRRALLDADVAVPVVRQFIAQIKERAL 60 Query: 76 AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +V+ Q+V+ V+E + +L ++ + VI++VG+ G GKTT+ GK Sbjct: 61 GAEVAQALNPGQQVVKIVNEELVGILGGETRRIQHAKTG-TTVIMLVGLQGAGKTTLAGK 119 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------SDAAAL 181 L+ + G +L A D R A+ QL++ +R G D + Sbjct: 120 LAHLLKSQGHTPLLVACDLQRPNAVKQLQVGGERAGVPVYAPHPGVSSEFEAATGDPVQV 179 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 A + +A K DV+IIDTAGRL ++ LM + + P VL V+DA Sbjct: 180 ARDGVAEANTKYHDVVIIDTAGRLGVDAELMQQAADIRAAVD------PDEVLFVIDAMI 233 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQ+A+ + F+ G TG+++TK+DG ARGG + + P+ F GEG+ D E F Sbjct: 234 GQDAVATAQAFNEGVGFTGVVLTKLDGDARGGAALSVRHVTGKPIMFASTGEGLKDFEVF 293 >gi|329901026|ref|ZP_08272671.1| Signal recognition particle, subunit Ffh SRP54 [Oxalobacteraceae bacterium IMCC9480] gi|327549273|gb|EGF33849.1| Signal recognition particle, subunit Ffh SRP54 [Oxalobacteraceae bacterium IMCC9480] Length = 457 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 109/209 (52%), Gaps = 7/209 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166 + P VIL+ G+ G GKTT +GKL+K + + K V+ + D +R AAI QL+ + Sbjct: 101 TQPPAVILMAGLQGAGKTTTVGKLAKFLKEKHKKKVLTVSADVYRPAAIGQLQTVTAQVG 160 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 ADF S +A A A+ DVLIIDTAGRL ++ +MA I + +K Sbjct: 161 ADFFPSLTTDKPVDIALAALDFAKRHYHDVLIIDTAGRLGIDAEMMAEIAALHAAVK--- 217 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+DA GQ+A+ + F+ TG+++TK+DG ARGG + + P+ Sbjct: 218 ---PIETLFVVDAMLGQDAINTAKAFNDTLPLTGIVLTKLDGDARGGAALSVRHITGKPI 274 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G E ++ LE F + + I G D Sbjct: 275 KFAGTAEKLDGLEAFDPQRMANRILGMGD 303 >gi|308232280|ref|ZP_07415541.2| signal recognition particle protein ffh [Mycobacterium tuberculosis SUMu001] gi|308380512|ref|ZP_07490199.2| signal recognition particle protein ffh [Mycobacterium tuberculosis SUMu011] gi|308214486|gb|EFO73885.1| signal recognition particle protein ffh [Mycobacterium tuberculosis SUMu001] gi|308361235|gb|EFP50086.1| signal recognition particle protein ffh [Mycobacterium tuberculosis SUMu011] Length = 528 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 148/311 (47%), Gaps = 23/311 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + + RL D E+ L+ +D+ + V + + + + Sbjct: 5 FESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARG 64 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L ++ + + P V+++ G+ G GKTT+ GKL Sbjct: 65 AEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTP-PTVVMLAGLQGSGKTTLAGKL 123 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184 + ++ G +L A D R AA++QL++ +R G+ D A+A Sbjct: 124 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAA 183 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 +A+AK DV+I+DTAGRL + LMA IR D P VL VLDA GQ+ Sbjct: 184 GLAEARAKHFDVVIVDTAGRLGIDEELMA-QAAAIR-----DAINPDEVLFVLDAMIGQD 237 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ F G TG+ +TK+DG ARGG + + +P+ F GE + D + F Sbjct: 238 AVTTAAAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 297 Query: 305 DFSAVITGCLD 315 ++ I G D Sbjct: 298 RMASRILGMGD 308 >gi|260061940|ref|YP_003195020.1| signal recognition particle protein [Robiginitalea biformata HTCC2501] gi|88786074|gb|EAR17243.1| signal recognition particle protein [Robiginitalea biformata HTCC2501] Length = 431 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 74/211 (35%), Positives = 105/211 (49%), Gaps = 7/211 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADR 164 D P VIL+ G+ G GKTT GKL+ + K +L A D +R AAIDQL + D+ Sbjct: 82 DLQGSPAVILMSGLQGSGKTTFSGKLANFLKSKKTKNPLLVACDVYRPAAIDQLHVVGDQ 141 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + D LA A+ +V+IIDTAGRL + +M I IR Sbjct: 142 IGVPVFSDKEVKDPVQLAKAGVAHAKQNGHNVVIIDTAGRLAVDEQMMTEISN-IR---- 196 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 D +P +L V+DA TGQ+A+ + F+ V G+++TK+DG RGG I I Sbjct: 197 -DAVSPGEILFVVDAMTGQDAVNTAKAFNDVLDFDGVVLTKLDGDTRGGAAISIKSVVDK 255 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + ++ F + I G D Sbjct: 256 PIKFIGTGEKMEAIDVFHPSRMADRILGMGD 286 >gi|306973321|ref|ZP_07485982.1| signal recognition particle protein ffh [Mycobacterium tuberculosis SUMu010] gi|308357351|gb|EFP46202.1| signal recognition particle protein ffh [Mycobacterium tuberculosis SUMu010] Length = 525 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 148/311 (47%), Gaps = 23/311 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + + RL D E+ L+ +D+ + V + + + + Sbjct: 2 FESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L ++ + + P V+++ G+ G GKTT+ GKL Sbjct: 62 AEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTP-PTVVMLAGLQGSGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184 + ++ G +L A D R AA++QL++ +R G+ D A+A Sbjct: 121 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAA 180 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 +A+AK DV+I+DTAGRL + LMA IR D P VL VLDA GQ+ Sbjct: 181 GLAEARAKHFDVVIVDTAGRLGIDEELMA-QAAAIR-----DAINPDEVLFVLDAMIGQD 234 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ F G TG+ +TK+DG ARGG + + +P+ F GE + D + F Sbjct: 235 AVTTAAAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294 Query: 305 DFSAVITGCLD 315 ++ I G D Sbjct: 295 RMASRILGMGD 305 >gi|240170562|ref|ZP_04749221.1| signal recognition particle protein Ffh [Mycobacterium kansasii ATCC 12478] Length = 531 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 90/311 (28%), Positives = 150/311 (48%), Gaps = 23/311 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + + RL D E+ L+ +D+ + V + V + + Sbjct: 2 FESLSDRLTSALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFVHRIKERARG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V++ + +L ++ + + P VI++ G+ G GKTT+ GKL Sbjct: 62 AEVSGALNPAQQVVKIVNDELIGILGGQTRELVFAKTP-PTVIMLAGLQGSGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184 + ++ G +L A D R AA++QL++ R G+ D A+A Sbjct: 121 AARLKSQGHTPLLVACDLQRPAAVNQLQVVGQRAGVTVFAPHPGASPESGPGDPVAVAAA 180 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 +A+AK DV+I+DTAGRL + LMA + + +DP VL VLDA GQ+ Sbjct: 181 GLAEARAKHFDVVIVDTAGRLGIDEELMA---QAAAIRDSIDPD---EVLFVLDAMIGQD 234 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ + F G +G+++TK+DG ARGG + + +P+ F GE + D + F Sbjct: 235 AVATAQAFGEGVGFSGVVLTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294 Query: 305 DFSAVITGCLD 315 ++ I G D Sbjct: 295 RMASRILGMGD 305 >gi|118617614|ref|YP_905946.1| signal recognition particle protein Ffh [Mycobacterium ulcerans Agy99] gi|118569724|gb|ABL04475.1| signal recognition particle protein Ffh [Mycobacterium ulcerans Agy99] Length = 523 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 91/311 (29%), Positives = 148/311 (47%), Gaps = 23/311 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + + RL D E+ L+ +D+ + V + V + + Sbjct: 2 FESLSDRLTGALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFVHRIKERARG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 VS Q+V+ V+E + +L ++ + + P V+++ G+ G GKTT+ GKL Sbjct: 62 AVVSGALNPAQQVVKIVNEELVGILGGQTRELVFAKTP-PTVVMLAGLQGSGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184 + ++ G +L A D R AA++QL++ R +G+ D A+A Sbjct: 121 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGQRAGVPVFAPHLGASPESGPGDPVAVAAA 180 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 +AQAK DV+I+DTAGRL + LMA + + + P VL VLDA GQ+ Sbjct: 181 GLAEAQAKHFDVVIVDTAGRLGIDEELMAQASAIRKAIN------PDEVLFVLDAMIGQD 234 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ + F G TG+ +TK+DG ARGG + + +P+ F GE + D + F Sbjct: 235 AVATAQAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294 Query: 305 DFSAVITGCLD 315 ++ I G D Sbjct: 295 RMASRILGMGD 305 >gi|15610053|ref|NP_217432.1| signal recognition particle protein [Mycobacterium tuberculosis H37Rv] gi|15842459|ref|NP_337496.1| signal recognition particle protein [Mycobacterium tuberculosis CDC1551] gi|31794092|ref|NP_856585.1| signal recognition particle protein [Mycobacterium bovis AF2122/97] gi|121638797|ref|YP_979021.1| putative signal recognition particle protein ffh [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662760|ref|YP_001284283.1| signal recognition particle protein Ffh [Mycobacterium tuberculosis H37Ra] gi|148824105|ref|YP_001288859.1| signal recognition particle protein ffh [Mycobacterium tuberculosis F11] gi|167969545|ref|ZP_02551822.1| signal recognition particle protein ffh [Mycobacterium tuberculosis H37Ra] gi|215404890|ref|ZP_03417071.1| signal recognition particle protein ffh [Mycobacterium tuberculosis 02_1987] gi|215428357|ref|ZP_03426276.1| signal recognition particle protein ffh [Mycobacterium tuberculosis T92] gi|218754669|ref|ZP_03533465.1| signal recognition particle protein ffh [Mycobacterium tuberculosis GM 1503] gi|224991289|ref|YP_002645978.1| putative signal recognition particle protein [Mycobacterium bovis BCG str. Tokyo 172] gi|254233006|ref|ZP_04926333.1| signal recognition particle protein ffh [Mycobacterium tuberculosis C] gi|254365555|ref|ZP_04981600.1| signal recognition particle protein ffh [Mycobacterium tuberculosis str. Haarlem] gi|254551987|ref|ZP_05142434.1| putative signal recognition particle protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187935|ref|ZP_05765409.1| putative signal recognition particle protein [Mycobacterium tuberculosis CPHL_A] gi|260202051|ref|ZP_05769542.1| putative signal recognition particle protein [Mycobacterium tuberculosis T46] gi|260206234|ref|ZP_05773725.1| putative signal recognition particle protein [Mycobacterium tuberculosis K85] gi|289444471|ref|ZP_06434215.1| signal recognition particle protein [Mycobacterium tuberculosis T46] gi|289448581|ref|ZP_06438325.1| signal recognition particle protein ffh [Mycobacterium tuberculosis CPHL_A] gi|289575621|ref|ZP_06455848.1| signal recognition particle protein ffh [Mycobacterium tuberculosis K85] gi|289746715|ref|ZP_06506093.1| signal recognition particle protein ffh [Mycobacterium tuberculosis 02_1987] gi|289751581|ref|ZP_06510959.1| signal recognition particle protein ffh [Mycobacterium tuberculosis T92] gi|289763092|ref|ZP_06522470.1| signal recognition particle protein ffh [Mycobacterium tuberculosis GM 1503] gi|294993988|ref|ZP_06799679.1| signal recognition particle protein [Mycobacterium tuberculosis 210] gi|306968984|ref|ZP_07481645.1| signal recognition particle protein ffh [Mycobacterium tuberculosis SUMu009] gi|307085628|ref|ZP_07494741.1| signal recognition particle protein ffh [Mycobacterium tuberculosis SUMu012] gi|54039627|sp|P66845|SRP54_MYCBO RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog gi|54042223|sp|P66844|SRP54_MYCTU RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog gi|1405951|emb|CAA98978.1| PROBABLE SIGNAL RECOGNITION PARTICLE PROTEIN FFH (FIFTY-FOUR HOMOLOG) (SRP PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|13882763|gb|AAK47310.1| signal recognition particle protein [Mycobacterium tuberculosis CDC1551] gi|31619687|emb|CAD96627.1| PROBABLE SIGNAL RECOGNITION PARTICLE PROTEIN FFH (FIFTY-FOUR HOMOLOG) [Mycobacterium bovis AF2122/97] gi|121494445|emb|CAL72926.1| Probable signal recognition particle protein ffh [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124602065|gb|EAY61075.1| signal recognition particle protein ffh [Mycobacterium tuberculosis C] gi|134151068|gb|EBA43113.1| signal recognition particle protein ffh [Mycobacterium tuberculosis str. Haarlem] gi|148506912|gb|ABQ74721.1| signal recognition particle protein Ffh [Mycobacterium tuberculosis H37Ra] gi|148722632|gb|ABR07257.1| signal recognition particle protein ffh [Mycobacterium tuberculosis F11] gi|224774404|dbj|BAH27210.1| putative signal recognition particle protein [Mycobacterium bovis BCG str. Tokyo 172] gi|289417390|gb|EFD14630.1| signal recognition particle protein [Mycobacterium tuberculosis T46] gi|289421539|gb|EFD18740.1| signal recognition particle protein ffh [Mycobacterium tuberculosis CPHL_A] gi|289540052|gb|EFD44630.1| signal recognition particle protein ffh [Mycobacterium tuberculosis K85] gi|289687243|gb|EFD54731.1| signal recognition particle protein ffh [Mycobacterium tuberculosis 02_1987] gi|289692168|gb|EFD59597.1| signal recognition particle protein ffh [Mycobacterium tuberculosis T92] gi|289710598|gb|EFD74614.1| signal recognition particle protein ffh [Mycobacterium tuberculosis GM 1503] gi|308353486|gb|EFP42337.1| signal recognition particle protein ffh [Mycobacterium tuberculosis SUMu009] gi|308364855|gb|EFP53706.1| signal recognition particle protein ffh [Mycobacterium tuberculosis SUMu012] gi|323718527|gb|EGB27698.1| signal recognition particle protein ffh [Mycobacterium tuberculosis CDC1551A] gi|326904530|gb|EGE51463.1| signal recognition particle protein ffh [Mycobacterium tuberculosis W-148] Length = 525 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 148/311 (47%), Gaps = 23/311 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + + RL D E+ L+ +D+ + V + + + + Sbjct: 2 FESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L ++ + + P V+++ G+ G GKTT+ GKL Sbjct: 62 AEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTP-PTVVMLAGLQGSGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184 + ++ G +L A D R AA++QL++ +R G+ D A+A Sbjct: 121 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAA 180 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 +A+AK DV+I+DTAGRL + LMA IR D P VL VLDA GQ+ Sbjct: 181 GLAEARAKHFDVVIVDTAGRLGIDEELMA-QAAAIR-----DAINPDEVLFVLDAMIGQD 234 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ F G TG+ +TK+DG ARGG + + +P+ F GE + D + F Sbjct: 235 AVTTAAAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294 Query: 305 DFSAVITGCLD 315 ++ I G D Sbjct: 295 RMASRILGMGD 305 >gi|315121876|ref|YP_004062365.1| signal recognition particle protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495278|gb|ADR51877.1| signal recognition particle protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 461 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 129/261 (49%), Gaps = 15/261 (5%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD---VSELIHKMLMPLSKPFN 104 E+ + +D+ + V Q + E + K AK + + + V +++H L+ + N Sbjct: 33 EIRRTFLEADVSLEVVQALNERIQEK--AKGAKILKSIQPGQMVVKIVHDELIEVLGTEN 90 Query: 105 WDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRSAAIDQLKI 160 + P VI++VG+ G GKTT K++ + K ML A D R AA +QL+ Sbjct: 91 VGLDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKMLMASLDIHRPAAQEQLRY 150 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 ++ D + A +A A + A+ + DV+I+DTAGR H N LM I ++ Sbjct: 151 LGEKIQVDTLEVVPKQLPAEIATRAIQNARDRGYDVVILDTAGRNHINESLMQEISEVKS 210 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 + PH +L V DA TGQ+A+ F G TG+I+T+MDG RGG + + Sbjct: 211 LTN------PHEILLVADALTGQDAVHLARNFDEKIGLTGIILTRMDGDGRGGAALSMRF 264 Query: 281 THKIPVYFLGVGEGINDLEPF 301 P+ +G GE I+DLE F Sbjct: 265 VTGKPIKAIGTGEKIDDLENF 285 >gi|116873236|ref|YP_850017.1| signal recognition particle protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742114|emb|CAK21238.1| signal recognition particle protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 450 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 109/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K +L A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ + +D +IIDTAGRLH + LM + ++ + Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEI------ 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ TGQ+A+ + F+ TG+++TK+DG RGG + I P+ Sbjct: 213 ATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ GE + +E F ++ I G D Sbjct: 273 FVATGEKMEAIETFHPDRMASRILGMGD 300 >gi|16800981|ref|NP_471249.1| hypothetical protein lin1915 [Listeria innocua Clip11262] gi|16414416|emb|CAC97145.1| ffh [Listeria innocua Clip11262] Length = 450 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 109/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K +L A D +R AAI QL+ + D Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ + +D +IIDTAGRLH + LM + ++ + Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEI------ 212 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ TGQ+A+ + F+ TG+++TK+DG RGG + I P+ Sbjct: 213 ATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ GE + +E F ++ I G D Sbjct: 273 FVATGEKMEAIETFHPDRMASRILGMGD 300 >gi|302335829|ref|YP_003801036.1| signal recognition particle subunit FFH/SRP54 (srp54) [Olsenella uli DSM 7084] gi|301319669|gb|ADK68156.1| signal recognition particle subunit FFH/SRP54 (srp54) [Olsenella uli DSM 7084] Length = 465 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 85/276 (30%), Positives = 133/276 (48%), Gaps = 13/276 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ V + V E+ +T +S Q V+ V + + ++L Sbjct: 33 EIRMALLEADVNYRVVKGFVASCKEKCMTAEVLDSLSPAQNVVRIVLDELTRLLGSTESK 92 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 + P+VI++VG+ G GKTT KL+ + G +LAA DT R AA DQL+ Sbjct: 93 LVLAQNRTPNVIMMVGLQGSGKTTASAKLAYLLRREGHSPLLAACDTHRPAAADQLETLG 152 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 + G DA +A EA + A D++I+DTAGRL + +M + + Sbjct: 153 SEIGVGVYRGD-GKDAVRVATEAIRAAVDHLNDIVIVDTAGRLQIDEEMMQEAVDIKSAV 211 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 K P +L V+DA TGQ+ + V F + G+IM+K+DG ARGGG + + Sbjct: 212 K------PDQILMVVDAMTGQDIVNVVREFASRVDFDGVIMSKLDGDARGGGALSVREVT 265 Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD-YG 317 P+ ++ +GE + LE F + I G D YG Sbjct: 266 GKPIKYVSLGEKPDSLEVFHPDRMAKRILGMGDVYG 301 >gi|33519643|ref|NP_878475.1| GTP-binding signal recognition particle protein [Candidatus Blochmannia floridanus] gi|33517306|emb|CAD83691.1| 4.5S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNA [Candidatus Blochmannia floridanus] Length = 457 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 89/298 (29%), Positives = 146/298 (48%), Gaps = 28/298 (9%) Query: 21 FASTSLKLKEGITDIISSRRLDDGVREELEDL----LIRSDIGVAVAQKIVEELLTKRYA 76 F S S K+ + I +I+ S+R+ + D+ L+ SD+ ++V Q VE L K Sbjct: 2 FTSLSKKMSQSIRNIMYSKRVTKYDVSKYLDIVQRSLLESDVALSVVQSFVE--LVKDNI 59 Query: 77 KDVSVQRVLYDVSELI----HKMLMPLSKPFN---WDFSHRPHV-ILVVGVNGVGKTTVI 128 +++ E I H ++ + N + + R +L+VG G GKTT Sbjct: 60 IKINIDSCCISGPEFIKILRHALIKAMKCEVNGQDLNLNDRSLTKLLIVGAQGSGKTTTT 119 Query: 129 GKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV---CSEIGSDAAALAYE 184 GKL++ + KV++ + D +RSAAI+QLK++A D S IG + + Sbjct: 120 GKLARFLKVRKNKKVLVVSTDVYRSAAINQLKVFASSEKIDCFEDYTSNIG--PVQIVQK 177 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A A+ +V+++DTAG L + + + +V+ P VL V+D+ GQ Sbjct: 178 AIDYAKLNFYNVIVVDTAGCLKTDCNAFLELVDIYKVIN------PEEVLFVVDSMIGQG 231 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGG-GLIPIVVTHKIPVYFLGVGEGINDLEPF 301 ++ + MF TG+++TK+DG A GG L +T K P+ F+G GE I+ LE F Sbjct: 232 SIDIINMFDKNLSLTGIVVTKLDGNACGGIALSAKFLTGK-PIKFIGTGESIDTLEVF 288 >gi|308369898|ref|ZP_07419448.2| signal recognition particle protein ffh [Mycobacterium tuberculosis SUMu002] gi|308371174|ref|ZP_07424073.2| signal recognition particle protein ffh [Mycobacterium tuberculosis SUMu003] gi|308372291|ref|ZP_07428112.2| signal recognition particle protein ffh [Mycobacterium tuberculosis SUMu004] gi|308373572|ref|ZP_07432906.2| signal recognition particle protein ffh [Mycobacterium tuberculosis SUMu005] gi|308374725|ref|ZP_07437149.2| signal recognition particle protein ffh [Mycobacterium tuberculosis SUMu006] gi|308326097|gb|EFP14948.1| signal recognition particle protein ffh [Mycobacterium tuberculosis SUMu002] gi|308329661|gb|EFP18512.1| signal recognition particle protein ffh [Mycobacterium tuberculosis SUMu003] gi|308333800|gb|EFP22651.1| signal recognition particle protein ffh [Mycobacterium tuberculosis SUMu004] gi|308337194|gb|EFP26045.1| signal recognition particle protein ffh [Mycobacterium tuberculosis SUMu005] gi|308340925|gb|EFP29776.1| signal recognition particle protein ffh [Mycobacterium tuberculosis SUMu006] Length = 528 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 148/311 (47%), Gaps = 23/311 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + + RL D E+ L+ +D+ + V + + + + Sbjct: 5 FESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARG 64 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L ++ + + P V+++ G+ G GKTT+ GKL Sbjct: 65 AEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTP-PTVVMLAGLQGSGKTTLAGKL 123 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184 + ++ G +L A D R AA++QL++ +R G+ D A+A Sbjct: 124 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAA 183 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 +A+AK DV+I+DTAGRL + LMA IR D P VL VLDA GQ+ Sbjct: 184 GLAEARAKHFDVVIVDTAGRLGIDEELMA-QAAAIR-----DAINPDEVLFVLDAMIGQD 237 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ F G TG+ +TK+DG ARGG + + +P+ F GE + D + F Sbjct: 238 AVTTAAAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 297 Query: 305 DFSAVITGCLD 315 ++ I G D Sbjct: 298 RMASRILGMGD 308 >gi|293392761|ref|ZP_06637079.1| signal recognition particle protein [Serratia odorifera DSM 4582] gi|291424620|gb|EFE97831.1| signal recognition particle protein [Serratia odorifera DSM 4582] Length = 322 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 64/174 (36%), Positives = 94/174 (54%), Gaps = 6/174 (3%) Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 +++ + D +R AAI QL+ A+ DF S+ + A +QA+ K DVLI+DT Sbjct: 1 MLVVSADVYRPAAIKQLETLAEGVGIDFFPSDAKDKPIDIVNRALQQAKLKFYDVLIVDT 60 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AGRLH + +M I ++ +K P L V+DA TGQ+A + F+ TG+ Sbjct: 61 AGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTAKAFNEALPLTGV 114 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ++TK+DG ARGG + I P+ FLGVGE + LEPF ++ I G D Sbjct: 115 VLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRVASRILGMGD 168 >gi|282861368|ref|ZP_06270433.1| signal recognition particle protein [Streptomyces sp. ACTE] gi|282564026|gb|EFB69563.1| signal recognition particle protein [Streptomyces sp. ACTE] Length = 515 Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 80/267 (29%), Positives = 132/267 (49%), Gaps = 15/267 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + + + + +VS Q+V+ V+E + +L Sbjct: 28 DATAREIRIALLEADVALPVVRAFIANVKERARGVEVSQALNPAQQVVKIVNEELVGILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + P VI++ G+ G GKTT+ GKL + G +L A D R A++Q Sbjct: 88 GETRRLRF-AKNPPTVIMLAGLQGAGKTTLAGKLGLWLKGQGHSPLLVACDLQRPNAVNQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + ADR E G+ D +A ++ + A+AK D++I+DTAGRL + LM Sbjct: 147 LSVVADRAGVAVYAPEPGNGVGDPVKVAQDSIEYAKAKVHDIVIVDTAGRLGIDEELMRQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P +L V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301 + I + F GE + D + F Sbjct: 261 ALSIAHVTGKQIMFASNGEKLEDFDAF 287 >gi|159471143|ref|XP_001693716.1| subunit of the signal recognition particle [Chlamydomonas reinhardtii] gi|158283219|gb|EDP08970.1| subunit of the signal recognition particle [Chlamydomonas reinhardtii] Length = 503 Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 6/201 (2%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 V++ VG+ G GKTT K + G K L DT+R+ A DQLK A + F Sbjct: 106 QVVMFVGLQGSGKTTTCTKYAYYYKKKGWKPALVCADTYRAGAFDQLKQNATKAQIPFYG 165 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 S +D AA+A + + + + D++I+DT+GR + L + ++ + +P Sbjct: 166 SYKETDPAAIAQQGVLRFREEGRDLIIVDTSGRHKQEAALFEEMKQVAAAV------SPD 219 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 ++ V+D + GQ A Q + F +I+TK+DG A+GGG + V K P+ FLG Sbjct: 220 VIIFVMDGSIGQAAFDQAKAFKEAVEVGAVIITKLDGHAKGGGALSAVSATKSPIIFLGT 279 Query: 292 GEGINDLEPFVAKDFSAVITG 312 GE ++ E F K F + G Sbjct: 280 GEHMDQFESFETKRFVQRLLG 300 >gi|124007453|ref|ZP_01692159.1| signal recognition particle protein [Microscilla marina ATCC 23134] gi|123987109|gb|EAY26858.1| signal recognition particle protein [Microscilla marina ATCC 23134] Length = 445 Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 77/281 (27%), Positives = 140/281 (49%), Gaps = 23/281 (8%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKMLMPL- 99 +E+ L+ +D+ VA+++ +E+ + + +VL +V +++H+ L L Sbjct: 32 KEIRRALVDADVNYKVAKQVTDEIKEEALGR-----KVLINVEPGQLLVKIVHEKLTALM 86 Query: 100 -SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQ 157 + + P V+L+ G+ G GKTT GKL+ ++ KV+L A D +R AAI+Q Sbjct: 87 GGEEEEINIEGDPAVVLMSGLQGSGKTTFSGKLANFINKKRNKKVLLVACDVYRPAAINQ 146 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L++ ++ + + +++ A K A+ V+I+DTAGRL + +M I Sbjct: 147 LQVVGEQIGVEVYAEPENKNPVSISQNAIKYAKENNHKVVIVDTAGRLAVDEEMMKEIED 206 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + +K P L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + Sbjct: 207 VKNAIK------PSETLFVVDSMTGQDAVNTAKTFNERINFDGVVLTKLDGDTRGGAALS 260 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 I P+ F G GE ++ + F + + I LD G+ Sbjct: 261 IRAVVNKPIKFTGTGEKMDAINVFRPEGMAGRI---LDMGD 298 >gi|19074626|ref|NP_586132.1| SIGNAL RECOGNITION PARTICLE RECEPTOR ALPHA SUBUNIT [Encephalitozoon cuniculi GB-M1] gi|19069268|emb|CAD25736.1| SIGNAL RECOGNITION PARTICLE RECEPTOR ALPHA SUBUNIT [Encephalitozoon cuniculi GB-M1] Length = 425 Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 110/205 (53%), Gaps = 19/205 (9%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-----AD 168 I VGVNGVGK+T + K+ + L+V +AA DTFR+ AI+QLK +R Sbjct: 219 ICFVGVNGVGKSTSLAKICYWLLQNKLRVYIAACDTFRAGAIEQLKTHVERFKLGGHLVG 278 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 F G D A++A A ++AQ + DV++IDTAGR+HN LMA + K++++ + Sbjct: 279 FYEKGYGKDDASVARCAIQEAQHEGYDVILIDTAGRMHNKKNLMASLTKLMKI------N 332 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAV-------AGTTGLIMTKMDGT-ARGGGLIPIVV 280 P ++ V +A G ++L + F+ +++TK+D R G ++ + Sbjct: 333 RPDHIIYVGEALVGSDSLDHIREFNKAIRDADQSRKIDSILLTKVDTVDDRIGQILNMAF 392 Query: 281 THKIPVYFLGVGEGINDLEPFVAKD 305 + P+ FLGVG+ +DL ++D Sbjct: 393 SSHAPILFLGVGQSNSDLSKIGSED 417 >gi|58221327|gb|AAW68306.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|193735106|gb|ACF20062.1| regulatory protein [Neisseria gonorrhoeae] Length = 140 Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 78/118 (66%), Gaps = 1/118 (0%) Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 + E ++ ++ PL KP + P VI++ G+NG GKTT IGKL+K G V+LAAG Sbjct: 22 LKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAG 81 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 DTFR+AA +QL+ W R + V S+ D+AA+ ++A + A+A+ +D+++ DTAGRL Sbjct: 82 DTFRAAAREQLQAWGGRNNVT-VISQTAGDSAAVCFDAVQAAKARGIDIVLADTAGRL 138 >gi|58221335|gb|AAW68310.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|193735094|gb|ACF20056.1| regulatory protein [Neisseria gonorrhoeae] gi|193735098|gb|ACF20058.1| regulatory protein [Neisseria gonorrhoeae] gi|193735102|gb|ACF20060.1| regulatory protein [Neisseria gonorrhoeae] Length = 140 Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 78/118 (66%), Gaps = 1/118 (0%) Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 + E ++ ++ PL KP + P VI++ G+NG GKTT IGKL+K G V+LAAG Sbjct: 22 LKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAG 81 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 DTFR+AA +QL+ W R + V S+ D+AA+ ++A + A+A+ +D+++ DTAGRL Sbjct: 82 DTFRAAAREQLQAWGGRNNVT-VISQTAGDSAAVCFDAVQAAKARGIDIVLADTAGRL 138 >gi|168188032|ref|ZP_02622667.1| signal recognition particle protein [Clostridium botulinum C str. Eklund] gi|169294122|gb|EDS76255.1| signal recognition particle protein [Clostridium botulinum C str. Eklund] Length = 451 Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 81/269 (30%), Positives = 144/269 (53%), Gaps = 14/269 (5%) Query: 53 LIRSDIGVAVAQKIV----EELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + ++ V E+ L + K ++ Q+V+ V++ + +++ S +F Sbjct: 39 LLEADVNYKIVRQFVKTTGEKCLGEEVMKSLTPGQQVVKIVNDELKELMG--STESKIEF 96 Query: 108 SHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 S++ VI++VG+ G GKTT+ GKL+ ++ K +L A D +R AAI QL++ + Sbjct: 97 SNKGLTVIMLVGLQGAGKTTMAGKLALQLRKNNKKPLLVACDIYRPAAIKQLQVVGKQID 156 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 +A + + A+ +V+IIDTAGRLH + LM + + I++ Sbjct: 157 VPVFSMGDKVSPVDIAKASIEHAKNNNNNVVIIDTAGRLHIDEALMEEL-ENIKI----- 210 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P+ +L V+D+ TGQ+A+ E F+ +G+I+TK+DG RGG + I P+ Sbjct: 211 SVEPNEILLVVDSMTGQDAVNVSETFNNKLDISGVILTKLDGDTRGGAALSIKAVTGKPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ++G+GE +NDLE F ++ I G D Sbjct: 271 KYVGLGEKMNDLEVFHPDRMASRILGMGD 299 >gi|193206261|ref|NP_741303.2| hypothetical protein F38A1.8 [Caenorhabditis elegans] Length = 625 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 87/282 (30%), Positives = 143/282 (50%), Gaps = 37/282 (13%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKP--- 102 E++ + LI ++ A+KI + +++K K V+ RV +V + + L+ L P Sbjct: 337 EKMRENLILKNVASEPAEKICQSVVSKLEGKVVNNFSRVAQEVKTAVRESLVQLLTPKHR 396 Query: 103 -------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 RP+VI+ GVNGVGK+T + K++ +++ +V++AAGDTFR+ A+ Sbjct: 397 VDILRDVIEAKRDGRPYVIVFCGVNGVGKSTNLAKITFWLTENKHRVLIAAGDTFRAGAV 456 Query: 156 DQLKIWADRTSADFVCSEI-------GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 +QL+ A R D + + G D A LA A K+A + DV+++DTAGR+ +N Sbjct: 457 EQLRTHA-RYLNDLHKNSVLLHEQGYGKDPAGLAAAAIKKAAEQDFDVVLVDTAGRMQDN 515 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF------HAVAGTT--- 259 LM + K+IRV + P VL V +A G A+ Q+ F HA G Sbjct: 516 EPLMRELAKLIRV------NEPDLVLFVGEALVGNEAVDQLVKFNEALANHASPGQKPRL 569 Query: 260 --GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 G+++TK D + G + + P+ F+G G+ +DL Sbjct: 570 IDGIVLTKFDTIDDKVGAAVSMTYITGQPIVFVGCGQTYSDL 611 >gi|150864210|ref|XP_001382942.2| GTP binding signal recognition particle receptor [Scheffersomyces stipitis CBS 6054] gi|149385466|gb|ABN64913.2| GTP binding signal recognition particle receptor [Scheffersomyces stipitis CBS 6054] Length = 545 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 84/286 (29%), Positives = 142/286 (49%), Gaps = 32/286 (11%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKR-YAKDVSVQRVLYDVSELIHKMLMP-LSKP 102 V ++ D LI +I A+ I++++ K ++V++ ++E + K+L P +S Sbjct: 258 VSKKFNDQLISKNIAPNTAKIIIDKIRDKLGNQRNVTLALYKQTLTEELTKILTPNVSTD 317 Query: 103 FNWDFSH-----RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 +D RP+VI VVGVNGVGK+T + KL+ L V++ A DTFRS A++Q Sbjct: 318 LLYDIKRNSTNPRPYVISVVGVNGVGKSTNLAKLAYWFLQNNLNVLICACDTFRSGAVEQ 377 Query: 158 LKIWAD---RTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 LK+ + R ++ E G A A + A ++K D+++IDTAG Sbjct: 378 LKVHVNNLQRLNSQSSNGENKIDIFEKGYGSGDHVVTTAKMAIQHAASEKFDIVLIDTAG 437 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG--- 260 R H+N+ LMA + K D P ++ V +A G +++ Q F+ G Sbjct: 438 RTHSNTKLMAPLKKF------GDAANPDKIIMVGEALVGTDSVEQAINFNNAFGNKRSLD 491 Query: 261 -LIMTKMDGTAR-GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 I++K+D G +I +V+ K+P+ F+G G+ D++ K Sbjct: 492 FFIISKVDTVGDLVGTMINMVMATKVPILFVGTGQTYTDIKRLSVK 537 >gi|325180969|emb|CCA15378.1| signal recognition particle putative [Albugo laibachii Nc14] Length = 509 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 6/204 (2%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 + ++ VG+ G GKTT I K + G K + DTFR+ A DQLK A + F Sbjct: 102 NTVMFVGLQGSGKTTSIAKYAHYYQRKGWKTCMVCADTFRAGAFDQLKQNATKLRIPFYG 161 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 S +D +A + Q +A +++++DT+GR + L A + ++ ++ P Sbjct: 162 SYTEADPVRIAEQGVAQFRADHYELILVDTSGRHKQETDLFAEMKQVAAAVR------PD 215 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 V+ V+D+T GQ Q F +I+TK+DG A+GGG + V P+ F G Sbjct: 216 DVVFVMDSTIGQAVYDQSSAFVQSVDVGSVIITKLDGHAKGGGALSAVAATGSPIIFYGT 275 Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315 GE ++LE F A+ F + + G D Sbjct: 276 GEHFSELETFDAQRFVSRMMGMGD 299 >gi|62733121|gb|AAX95238.1| signal recognition particle protein, putative [Oryza sativa Japonica Group] Length = 1072 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 68/191 (35%), Positives = 95/191 (49%), Gaps = 20/191 (10%) Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 G ML A D +R AAIDQL I + + + +A K+A++KK DV+I Sbjct: 612 GKSCMLIAADVYRPAAIDQLTILGKQVGVPVYSEGTEAKPSQIAKNGIKEAKSKKTDVII 671 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN---ALR-------- 247 +DTAGRL + +M+ + ++ R + P VL V+DA TGQ ALR Sbjct: 672 VDTAGRLQVDKAMMSELKEVKRAVN------PTEVLLVVDAMTGQEAAFALRLTRISFLI 725 Query: 248 ---QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 V F+ G TG I+TK+DG +RGG + I P+ F+G GE + DLEPF Sbjct: 726 WPALVSTFNVEIGITGAILTKLDGDSRGGAALSIKEVSGKPIKFVGRGERMEDLEPFYPD 785 Query: 305 DFSAVITGCLD 315 + I G D Sbjct: 786 RMAQRILGMGD 796 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 85/303 (28%), Positives = 142/303 (46%), Gaps = 21/303 (6%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +LT G S KL+ G+ D+++ + + +R+ + L+ +D+ + V ++ V + K Sbjct: 74 QLTTGLESAWNKLR-GV-DVLTKENIVEPMRD-IRRALLEADVSLPVVRRFVSSISEKAL 130 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 D+ R + +L+ L S + H LV + G V K Sbjct: 131 GSDLI--RGVRPEQQLVKTNLCAFSTGQITYSVVQIVHDELVKLMGGEVSDLVFAK---- 184 Query: 135 MSDAGLKVMLAAG--DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 +G V+L AG D +R AAIDQL I ++ + A + A ++A+ K Sbjct: 185 ---SGPTVILLAGLQDVYRPAAIDQLTILGEQVGVPVYSEGTEAKPAQITKNAVEEAKRK 241 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 +D +++DTAGRL + +M + ++ + + P VL V+DA TGQ A V F Sbjct: 242 NIDAIVMDTAGRLQIDKSMMVELKEVKKAVN------PTEVLLVVDAMTGQEAAALVTTF 295 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + G TG I+TK+DG +RGG + + P+ F+G GE + DLE F + + G Sbjct: 296 NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKFVGRGERMEDLELFYPDRMAQRVLG 355 Query: 313 CLD 315 D Sbjct: 356 MGD 358 >gi|330844238|ref|XP_003294039.1| hypothetical protein DICPUDRAFT_51281 [Dictyostelium purpureum] gi|325075556|gb|EGC29428.1| hypothetical protein DICPUDRAFT_51281 [Dictyostelium purpureum] Length = 572 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 85/273 (31%), Positives = 131/273 (47%), Gaps = 35/273 (12%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQR-----VLYDVSELIHKMLMPLSKPFNWDF 107 L + ++ +A K+VE + T K +S + V + E I ++L P N D Sbjct: 296 LTKKNVAADIADKLVESIGTGLEGKKLSTFQGVSGVVKQQMEETITRILTPKR---NIDI 352 Query: 108 --------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 RP+ I+ GVNGVGK+T + K+ ++ G + MLAA DTFRS AI+QLK Sbjct: 353 LREVQAVKGKRPYTIVFSGVNGVGKSTNLAKICYWLTANGYRCMLAACDTFRSGAIEQLK 412 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 ADR DAA +A +A +A+ +DV++IDT GR+ NN LM + K++ Sbjct: 413 THADRLGVPLYERGYSKDAANVAADAIAEAKDMGIDVVLIDTTGRMQNNEPLMKALSKLV 472 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH------------AVAGTTGLIMTKMD 267 + + VL V +A G + + Q+ F + G+I+TK D Sbjct: 473 ------NQNNADLVLFVGEALVGNDGVDQLTKFDKSLSLLSSTTSSKIRTIDGIILTKFD 526 Query: 268 G-TARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 + G I +V + P+ FLG G+ DL+ Sbjct: 527 TIDDKVGAAISMVYSTGHPILFLGTGQNYTDLK 559 >gi|120437132|ref|YP_862818.1| signal recognition particle protein [Gramella forsetii KT0803] gi|117579282|emb|CAL67751.1| signal recognition particle protein [Gramella forsetii KT0803] Length = 442 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 109/211 (51%), Gaps = 7/211 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADR 164 + S P VIL+ G+ G GKTT GKL+ + + K +L A D +R AAI+QL + ++ Sbjct: 94 NLSGDPSVILMSGLQGSGKTTFSGKLANFLKNKKTKKPLLVACDVYRPAAINQLHVVGEQ 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + E D A++ +A A+ +V+IIDTAGRL + +M I + ++ Sbjct: 154 VGVEVYSDEGNQDPVAISKDAIAYAKENGHNVVIIDTAGRLAVDEAMMTEISNIHEAIQ- 212 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P L V+D+ TGQ+A+ + F+ G+I+TK+DG RGG I I Sbjct: 213 -----PQETLFVVDSMTGQDAVNTAKTFNERLNFDGVILTKLDGDTRGGAAISIKSVVNK 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE ++ ++ F + I G D Sbjct: 268 PIKFIGTGEKMDAIDIFYPSRMADRILGMGD 298 >gi|145642024|ref|ZP_01797596.1| Signal recognition particle protein [Haemophilus influenzae R3021] gi|145273295|gb|EDK13169.1| Signal recognition particle protein [Haemophilus influenzae 22.4-21] Length = 329 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 64/172 (37%), Positives = 90/172 (52%), Gaps = 6/172 (3%) Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 + + D +R AAI QL+ A DF S++ + +A A A+ K DVLI+DTAG Sbjct: 1 MVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAKLKFYDVLIVDTAG 60 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 RLH ++ +M I ++ L P L +DA TGQ+A + F+ TG+I+ Sbjct: 61 RLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAKAFNEALPLTGVIL 114 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TK+DG ARGG + I P+ FLGVGE LEPF ++ I G D Sbjct: 115 TKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRILGMGD 166 >gi|88604251|ref|YP_504429.1| signal recognition particle protein Srp54 [Methanospirillum hungatei JF-1] gi|88189713|gb|ABD42710.1| signal recognition particle subunit FFH/SRP54 (srp54) [Methanospirillum hungatei JF-1] Length = 437 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 97/307 (31%), Positives = 146/307 (47%), Gaps = 36/307 (11%) Query: 28 LKEGITDIISSRRLDDGVREEL-EDL---LIRSDIGV----AVAQKIVEELLTKRYAKDV 79 LK+ + + +D EEL +DL L+++D+ V ++Q I + L ++ K V Sbjct: 9 LKDALRKLAGKTVIDRAAVEELVKDLQRALLQADVNVKQVMQLSQTIKKRALDEQPPKGV 68 Query: 80 S----VQRVLYD--VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 + V R++Y+ V+ + K+ + L K +IL+ G+ G GKTT KL++ Sbjct: 69 TAREHVLRIVYEELVALVGQKVEVTLGK----------QIILMAGLQGSGKTTTTAKLAR 118 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 G++V + DTFR A Q+K D+ DA + E Q K Sbjct: 119 FFKRKGMRVAVICADTFRPGAYTQIKTLCDKVHVPCYGDPSEHDARKIVREGLAQL---K 175 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +V+I+DT GR L+ I + + K A H L VLDA GQ A Q FH Sbjct: 176 EEVIIVDTQGRHALEDDLITEIIDLNEITK-----ATHRWL-VLDAALGQQAREQARRFH 229 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 G+I+TKMDGTA+GGG + V + F+G GE I DLE F D ++ I+ Sbjct: 230 EAVSIDGVIITKMDGTAKGGGAMSAVAETGSGIVFIGQGETIEDLEWF---DPNSYISRL 286 Query: 314 LDYGEEK 320 L G+ K Sbjct: 287 LGMGDLK 293 >gi|169335863|ref|ZP_02863056.1| hypothetical protein ANASTE_02295 [Anaerofustis stercorihominis DSM 17244] gi|169258601|gb|EDS72567.1| hypothetical protein ANASTE_02295 [Anaerofustis stercorihominis DSM 17244] Length = 440 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 84/286 (29%), Positives = 143/286 (50%), Gaps = 15/286 (5%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90 ++ + +D +RE + L+ +D+ V + L K ++V Q+V+ V+ Sbjct: 22 LTEKDIDAALRE-IRMSLLEADVNYKVVKTFANNLKEKCMGEEVLKSLTPGQQVIKIVNN 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA-AGDT 149 + +L S+ N + P +I+VVGV G GKTT IGK+ + K ++ A D Sbjct: 81 ELVALLGGESRDINL-ADNGPTIIMVVGVQGSGKTTSIGKMGNFFKNKKNKKVVFVACDI 139 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 R+AA+DQLK+ + + V + DA +A + + + D++I+DTAGR H +S Sbjct: 140 HRAAAVDQLKVLGEGLDIE-VFTLDKKDAGKIAKKGVEYGKKIGADIIIVDTAGRQHVDS 198 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269 +M + ++V K ++P+ L V+D+ GQ A+ + F TG I++K+D Sbjct: 199 EMME---EAVKVKKAINPN---ETLFVIDSLMGQQAVDAAKAFDESLEITGFILSKLDSD 252 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ARGG + + K P+ F GE + D EPF ++ I G D Sbjct: 253 ARGGAALSVTYITKKPIKFSAFGEKMEDFEPFHPDRVASRILGMGD 298 >gi|313203704|ref|YP_004042361.1| signal recognition particle subunit ffh/srp54 (srp54) [Paludibacter propionicigenes WB4] gi|312443020|gb|ADQ79376.1| signal recognition particle subunit FFH/SRP54 (srp54) [Paludibacter propionicigenes WB4] Length = 439 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 81/279 (29%), Positives = 140/279 (50%), Gaps = 13/279 (4%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99 V E L+D+ L+ +D+ +A+ + + K ++V + + + +++H L L Sbjct: 26 NVAETLKDVRKALLDADVNFKIAKTFTDTVKEKAIGQNVLTSLKPNQLMVKIVHDELAQL 85 Query: 100 SKPFNWDFSHR--PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAID 156 + D + + P VIL+ G+ G GKTT GKL+ + K +L A D +R AAI+ Sbjct: 86 MGGASVDINLKGSPTVILMSGLQGSGKTTFSGKLANLLKTKRSKNPLLVACDVYRPAAIE 145 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QLK+ ++ + ++A A K A+ DV+I+DTAGRL + +M I Sbjct: 146 QLKVLGEQLGVPVYSDLESKNPVSIAEAAIKHAKLHGNDVVIVDTAGRLAVDEAMMNEIA 205 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + + + P +L V+D+ TGQ+A+ + F+ G+I+TK+DG RGG + Sbjct: 206 AIKKAIN------PQEILFVVDSMTGQDAVNTAKEFNDRLDFDGVILTKLDGDTRGGAAL 259 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I P+ F+G GE ++ L+ F + + I G D Sbjct: 260 SIRSVVNKPIKFVGTGEKMDALDVFYPERMADRILGMGD 298 >gi|313619619|gb|EFR91265.1| signal recognition particle protein [Listeria innocua FSL S4-378] Length = 363 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 109/208 (52%), Gaps = 11/208 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P VI++VG+ G GKTT GKL+ + K +L A D +R AAI QL+ + D Sbjct: 14 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 71 Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G + +A +A +A+ + +D +IIDTAGRLH + LM + ++ + Sbjct: 72 PVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEI------ 125 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P +L V+D+ TGQ+A+ + F+ TG+++TK+DG RGG + I P+ Sbjct: 126 ATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 185 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ GE + +E F ++ I G D Sbjct: 186 FVATGEKMEAIETFHPDRMASRILGMGD 213 >gi|67624007|ref|XP_668286.1| signal recognition particle receptor alpha subunit [Cryptosporidium hominis TU502] gi|54659474|gb|EAL38049.1| signal recognition particle receptor alpha subunit [Cryptosporidium hominis] Length = 548 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 68/196 (34%), Positives = 110/196 (56%), Gaps = 14/196 (7%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 + I+ +GVNGVGK+T + K+ + + G L V++ A DTFR+ AI+QLK A+ Sbjct: 346 YSIVFLGVNGVGKSTNLAKVCYLLKNKGNLNVLIVACDTFRAGAIEQLKTHANCLGVQLY 405 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 G DAA +A +A A+ K DV++IDTAGR+ +N LM + K+++V + P Sbjct: 406 EKGYGKDAAMVAKDAISYAKDKGFDVVLIDTAGRMQDNVPLMKSLAKLVQV------NNP 459 Query: 231 HSVLQVLDATTGQNALRQVEMFHAV------AGTTGLIMTKMDGT-ARGGGLIPIVVTHK 283 + VL V +A G +A+ Q+++F+ G+I+TK D + G + +V T Sbjct: 460 NLVLFVGEALVGNDAVHQLQVFNKYLVEFGDRPIDGIILTKFDTVDDKVGAALSMVYTTG 519 Query: 284 IPVYFLGVGEGINDLE 299 PV F+G G+ +L+ Sbjct: 520 QPVVFVGTGQKYFNLK 535 >gi|331001995|ref|ZP_08325515.1| signal recognition particle protein [Lachnospiraceae oral taxon 107 str. F0167] gi|330411791|gb|EGG91196.1| signal recognition particle protein [Lachnospiraceae oral taxon 107 str. F0167] Length = 451 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 90/306 (29%), Positives = 153/306 (50%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ ++ RL +D VR L+++ L+ +D+ V + ++ + K Sbjct: 3 FESLSEKLQNVFKNLRGKGRLTEDDVRAGLKEVRLALLEADVSFKVVKDFIKSIQEKAIG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 DV Q+V+ V+E + ++ + S VI++ G+ G GKTT KL Sbjct: 63 SDVLNSLTPAQQVIKIVNEEMVSLMGSETTELKIKPSGDITVIMMAGLQGAGKTTTTAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--DAAALAYEAFKQA 189 + K+ G +L D +R AAI+QLK ++ D E+G+ A +A A + A Sbjct: 123 AGKLKKKGNSPLLVGCDIYRPAAIEQLKRNGEKV--DVPVFEMGTAHKPAEIAKRALEFA 180 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + +++ +DTAGRLH + +M +L+ D ++ V+DA TGQ+A+ Sbjct: 181 KENHHNIVFLDTAGRLHIDEDMMN------ELLEIKDNVNVDDIILVVDAMTGQDAVNVA 234 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F+ TG+I+TK+DG RGG + + P+ ++G+GE ++DLE F ++ Sbjct: 235 ETFNEKLDITGVILTKLDGDTRGGAALSVRAVTGKPILYVGMGEKLSDLEQFYPDRMASR 294 Query: 310 ITGCLD 315 I G D Sbjct: 295 ILGMGD 300 >gi|86132319|ref|ZP_01050914.1| signal recognition 54 kDa protein [Dokdonia donghaensis MED134] gi|85817238|gb|EAQ38421.1| signal recognition 54 kDa protein [Dokdonia donghaensis MED134] Length = 442 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 106/211 (50%), Gaps = 7/211 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAIDQLKIWADR 164 + S P +IL+ G+ G GKTT GKL+ + K +L A D +R AAIDQL + D+ Sbjct: 94 NLSATPSIILMSGLQGSGKTTFSGKLANFLKTKKTKKPLLVACDVYRPAAIDQLHVVGDQ 153 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 D + +A + A+A +V+IIDTAGRL + +M I + ++ Sbjct: 154 IKVDVYSDRDEKNPVKIAQDGIAFAKANGHNVVIIDTAGRLAVDEAMMKEIADVHTAIQ- 212 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P L V+D+ TGQ+A+ + F+ + G+I+TK+DG RGG I I Sbjct: 213 -----PQETLFVVDSMTGQDAVNTAKAFNDILNFDGVILTKLDGDTRGGAAISIKSVVDK 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + ++ F + I G D Sbjct: 268 PIKFIGTGEKMEAIDVFYPSRMADRILGMGD 298 >gi|241956007|ref|XP_002420724.1| signal recognition particle (SRP) receptor subunit alpha, putative [Candida dubliniensis CD36] gi|223644066|emb|CAX41809.1| signal recognition particle (SRP) receptor subunit alpha, putative [Candida dubliniensis CD36] Length = 535 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 83/289 (28%), Positives = 142/289 (49%), Gaps = 33/289 (11%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMP-LS 100 D V ++ + LI +I A I++++ TK K V++ +++ + K+L P +S Sbjct: 245 DEVSKKFREQLISKNITPGTATTIIDKIKTKLSTNKKVTMAVYKQALTDELTKILTPNVS 304 Query: 101 KPF------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 N + + RP+VI VVGVNGVGK+T + KL+ L V++ A DTFRS A Sbjct: 305 TDLLHDIKRNAELNTRPYVISVVGVNGVGKSTNLAKLAFWFLQNNLNVLICACDTFRSGA 364 Query: 155 IDQLKIWAD------------RTSADFVCSEIGS--DAAALAYEAFKQAQAKKVDVLIID 200 ++QLK+ + ++ D GS A +A + A D+++ID Sbjct: 365 VEQLKVHVNNLNRLNEASTNTKSRIDIFEKGYGSGDHVVQTAKQAIQYAGENNFDIVLID 424 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGR H+N+ LMA + K D +P+ ++ V +A G +++ Q F+ G Sbjct: 425 TAGRTHSNAKLMAPLKKF------GDAASPNKIIMVGEALVGTDSVEQATNFNKAFGNKR 478 Query: 261 ----LIMTKMDGTAR-GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 I++K+D G +I +V+ +P+ F+G G+ D++ K Sbjct: 479 TLDFFIISKVDTVGDLVGTMINMVMATNVPILFVGTGQTYTDIKRLSVK 527 >gi|326524808|dbj|BAK04340.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 606 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 89/314 (28%), Positives = 149/314 (47%), Gaps = 37/314 (11%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W + + A ++ +L+E +D+ + + L+D L+ ++ +A+K+ E + Sbjct: 300 WFSSMFRSIAGSNAELEE--SDLQPALK-------SLKDRLMTKNVAEEIAEKLCESVAA 350 Query: 73 KRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR----------PHVILVVGVNG 121 K + S R+ V + + L+ + P R P+VI+ VGVNG Sbjct: 351 SLLGKKLGSFTRISSSVQTAMEEALVRILTPRRSIDVLRDVHAAKDRGTPYVIVFVGVNG 410 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGK+T + K++ + L V LAA DTFRS A++QL+ A R D A + Sbjct: 411 VGKSTNLAKVAYWLLQHDLSVTLAACDTFRSGAVEQLRTHARRLQIPIFEKGYERDPAVV 470 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 A A ++A K DV+++DTAGR+ +N LM + K+I + + P VL V +A Sbjct: 471 AKGAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSKLINL------NNPDLVLFVGEALV 524 Query: 242 GQNALRQVEMFH------AVAGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLG 290 G +A+ Q+ F + A T G+++TK D + G + +V PV F+G Sbjct: 525 GNDAVDQLTKFSQKLADLSTAPTARSIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVG 584 Query: 291 VGEGINDLEPFVAK 304 G+ DL+ K Sbjct: 585 CGQSYTDLKKLNVK 598 >gi|228473709|ref|ZP_04058457.1| signal recognition particle protein [Capnocytophaga gingivalis ATCC 33624] gi|228274856|gb|EEK13673.1| signal recognition particle protein [Capnocytophaga gingivalis ATCC 33624] Length = 444 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/273 (28%), Positives = 134/273 (49%), Gaps = 10/273 (3%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL--SKPF 103 +E+ L+ +D+ A+A++ ++ K +V + + + +++H L L Sbjct: 32 KEVRRALLDADVNYAIAKEFTAKVKAKALGSNVLTTLQPGQLMVKIVHDELTELMGGDAT 91 Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAIDQLKIWA 162 + S P VIL+ G+ G GKTT GKL+ + + K +L A D +R AAIDQL I Sbjct: 92 GVNLSGNPSVILMSGLQGSGKTTFSGKLANFLKNKKNKKPLLVACDVYRPAAIDQLHIVG 151 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 + + + + +A + A++ +V+IIDTAGRL + +M I + + Sbjct: 152 QQIGVEVFSEKENRNPVDIAQKGLAYAKSNGYNVVIIDTAGRLAVDEQMMKEIADIHHAV 211 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 P L V+DA TGQ+A+ + F+ V G+++TK+DG RGG I I Sbjct: 212 ------TPQETLFVVDAMTGQDAVNTAKAFNDVLNFDGVVLTKLDGDTRGGAAISIKSVV 265 Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE ++ ++ F + I G D Sbjct: 266 NKPIKFVGTGEKMDAIDIFYPSRMADRILGMGD 298 >gi|66361764|ref|XP_627404.1| Srp101p GTpase. signal recognition particle receptor alpha subunit [Cryptosporidium parvum Iowa II] gi|46228777|gb|EAK89647.1| Srp101p GTpase, signal recognition particle receptor alpha subunit [Cryptosporidium parvum Iowa II] Length = 548 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/196 (34%), Positives = 110/196 (56%), Gaps = 14/196 (7%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 + I+ +GVNGVGK+T + K+ + + G L V++ A DTFR+ AI+QLK A+ Sbjct: 346 YSIVFLGVNGVGKSTNLAKVCYLLKNKGNLNVLIVACDTFRAGAIEQLKTHANCLGVQLY 405 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 G DAA +A +A A+ K DV++IDTAGR+ +N LM + K+++V + P Sbjct: 406 EKGYGKDAAMVAKDAISYAKDKGFDVVLIDTAGRMQDNVPLMKSLAKLVQV------NNP 459 Query: 231 HSVLQVLDATTGQNALRQVEMFHAV------AGTTGLIMTKMDGT-ARGGGLIPIVVTHK 283 + VL V +A G +A+ Q+++F+ G+I+TK D + G + +V T Sbjct: 460 NLVLFVGEALVGNDAVHQLQVFNKYLVEFGDRPIDGIILTKFDTVDDKVGAALSMVYTTG 519 Query: 284 IPVYFLGVGEGINDLE 299 PV F+G G+ +L+ Sbjct: 520 QPVVFVGTGQKYFNLK 535 >gi|170290943|ref|YP_001737759.1| GTP-binding signal recognition particle [Candidatus Korarchaeum cryptofilum OPF8] gi|170175023|gb|ACB08076.1| GTP-binding signal recognition particle SRP54 G- domain protein [Candidatus Korarchaeum cryptofilum OPF8] Length = 290 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 107/195 (54%), Gaps = 12/195 (6%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +P ++ G NGVGK+ I KL+K + D G +V++ + DT+R+AA +QL+ + Sbjct: 94 RKPFKVVFFGFNGVGKSLSIVKLAKYLQDMGGRVLVVSADTYRAAAGEQLEGYCRAAGIS 153 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + GSD +A+ ++A A A+ L+IDTAGR + N L+ + K+ RV++ Sbjct: 154 IFKGQRGSDPSAVCFDAMSMASARGYSHLLIDTAGRNYLNKNLIEELRKIFRVVE----- 208 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT--HKIPV 286 P + VLD G + L Q + F+ V G +I+TK+D GG ++P+ + PV Sbjct: 209 -PDLRVLVLDGVAGNDVLSQCDSFNEV-GYDAIIVTKVDA---GGPIVPLFASIHSGKPV 263 Query: 287 YFLGVGEGINDLEPF 301 F+G G+ +D+ F Sbjct: 264 LFVGTGQSFSDIATF 278 >gi|58221321|gb|AAW68303.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|58221323|gb|AAW68304.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|58221329|gb|AAW68307.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|58221331|gb|AAW68308.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|58221337|gb|AAW68311.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|58221341|gb|AAW68313.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|108937136|gb|ABG23380.1| putative signal recognition particle protein [Neisseria gonorrhoeae] gi|116582907|gb|ABK00076.1| regulatory protein [Neisseria gonorrhoeae] gi|116582909|gb|ABK00077.1| regulatory protein [Neisseria gonorrhoeae] gi|193735092|gb|ACF20055.1| regulatory protein [Neisseria gonorrhoeae] gi|193735100|gb|ACF20059.1| regulatory protein [Neisseria gonorrhoeae] gi|193735110|gb|ACF20064.1| regulatory protein [Neisseria gonorrhoeae] Length = 140 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 78/118 (66%), Gaps = 1/118 (0%) Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 + E ++ ++ PL KP + P VI++ G+NG GKTT IGKL+K G V+LAAG Sbjct: 22 LKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAG 81 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 DTFR+AA +QL+ W R + V S+ D+AA+ ++A + A+A+ +D+++ DTAGRL Sbjct: 82 DTFRAAAREQLQAWGGRNNVT-VISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRL 138 >gi|308375922|ref|ZP_07445553.2| signal recognition particle protein ffh [Mycobacterium tuberculosis SUMu007] gi|308377166|ref|ZP_07441361.2| signal recognition particle protein ffh [Mycobacterium tuberculosis SUMu008] gi|308344837|gb|EFP33688.1| signal recognition particle protein ffh [Mycobacterium tuberculosis SUMu007] gi|308348785|gb|EFP37636.1| signal recognition particle protein ffh [Mycobacterium tuberculosis SUMu008] Length = 517 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 86/285 (30%), Positives = 139/285 (48%), Gaps = 19/285 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + + + + +VS Q+V+ V+E + +L Sbjct: 20 DATTREIRLALLEADVSLPVVRAFIHRIKERARGAEVSSALNPAQQVVKIVNEELISILG 79 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + P V+++ G+ G GKTT+ GKL+ ++ G +L A D R AA++Q Sbjct: 80 GETRELAFAKTP-PTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACDLQRPAAVNQ 138 Query: 158 LKIWADRTSADFVCSEIGS-------DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 L++ +R G+ D A+A +A+AK DV+I+DTAGRL + Sbjct: 139 LQVVGERAGVPVFAPHPGASPESGPGDPVAVAAAGLAEARAKHFDVVIVDTAGRLGIDEE 198 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LMA IR D P VL VLDA GQ+A+ F G TG+ +TK+DG A Sbjct: 199 LMA-QAAAIR-----DAINPDEVLFVLDAMIGQDAVTTAAAFGEGVGFTGVALTKLDGDA 252 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + + +P+ F GE + D + F ++ I G D Sbjct: 253 RGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRILGMGD 297 >gi|313124886|ref|YP_004035150.1| signal recognition particle subunit ffh/srp54 (srp54) [Halogeometricum borinquense DSM 11551] gi|312291251|gb|ADQ65711.1| signal recognition particle subunit FFH/SRP54 (srp54) [Halogeometricum borinquense DSM 11551] Length = 464 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/210 (32%), Positives = 96/210 (45%), Gaps = 8/210 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 D P IL+ G+ G GKTT K++ S GL+ + DTFR A DQ K +R Sbjct: 92 DIPLEPQTILLAGLQGSGKTTTAAKMAWWFSTKGLRAAVIQTDTFRPGAYDQAKQMCERA 151 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 +F D +A + + + D+ I+DTAGR L+ I + + Sbjct: 152 EVEFYGDPDEEDPVKIARDGLEATE--DADIHIVDTAGRHALEDALIDEIEDIDSAVN-- 207 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P L VLDA GQ A Q F G G+ +TK+DGTA+GGG + V Sbjct: 208 ----PDRSLLVLDAAIGQGAKDQARQFDDSIGIDGVAITKLDGTAKGGGALTAVNETDSS 263 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + FLG GE + D+E F F + + G D Sbjct: 264 IGFLGTGETVQDIERFEPNGFISRLLGMGD 293 >gi|303281744|ref|XP_003060164.1| type II secretory pathway family protein [Micromonas pusilla CCMP1545] gi|226458819|gb|EEH56116.1| type II secretory pathway family protein [Micromonas pusilla CCMP1545] Length = 628 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 108/204 (52%), Gaps = 18/204 (8%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S RP+VI VGVNGVGK+T + K++ + ++VM+AA DTFR+ A++QL+ R Sbjct: 417 SGRPYVITFVGVNGVGKSTNLSKVAYWLLQHDVRVMIAACDTFRAGAVEQLRTHCKRLGV 476 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 D A++A EA K A+ +V+++DTAGR+ +N LM + K+I V Sbjct: 477 PLFERGYEKDPASVASEAVKAARRTGAEVVLVDTAGRMQDNEPLMRALAKLINV------ 530 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGT-----------TGLIMTKMDG-TARGGGL 275 + P VL V +A G +A+ Q+ F+ G++++K D + G Sbjct: 531 NEPDLVLFVGEALVGNDAVDQLSKFNERLSDLATDAKKRRVIDGVVLSKFDTIDDKVGAA 590 Query: 276 IPIVVTHKIPVYFLGVGEGINDLE 299 + +V T PV F+G G+ DL+ Sbjct: 591 LSMVYTSGAPVMFVGCGQTYTDLK 614 >gi|289675158|ref|ZP_06496048.1| Signal recognition particle protein [Pseudomonas syringae pv. syringae FF5] Length = 281 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/188 (36%), Positives = 101/188 (53%), Gaps = 7/188 (3%) Query: 129 GKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 GKL++ + + K VM+ + D +R AAI QL+ A+ F S+I +A A K Sbjct: 3 GKLARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIAQAAIK 62 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 +A+ K +DV+I+DTAGRLH + +M I + +K P L V+DA TGQ+A Sbjct: 63 EARLKFIDVVIVDTAGRLHVDVEMMGEIQALHAAVK------PAETLFVVDAMTGQDAAN 116 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F TG+I+TK+DG ARGG + + P+ F+G+GE LEPF + Sbjct: 117 TAKAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIA 176 Query: 308 AVITGCLD 315 + I G D Sbjct: 177 SRILGMGD 184 >gi|139436969|ref|ZP_01771129.1| Hypothetical protein COLAER_00102 [Collinsella aerofaciens ATCC 25986] gi|133776616|gb|EBA40436.1| Hypothetical protein COLAER_00102 [Collinsella aerofaciens ATCC 25986] Length = 461 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 85/269 (31%), Positives = 132/269 (49%), Gaps = 15/269 (5%) Query: 53 LIRSDIGVAVAQKIV----EELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V ++ V E +T + +S Q V+ V + + +ML S F Sbjct: 8 LLEADVNFKVVKEFVAKTKERCMTAEVMESLSPAQNVVKIVLDELTEMLG--STESKLVF 65 Query: 108 SHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 S+R P+VI++VG+ G GKTT KL+ + G +L A D +R AA DQL Sbjct: 66 SNRIPNVIMLVGLQGSGKTTAAVKLAYLLKKQGRSPLLVACDVYRPAAADQLATLGGEIG 125 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + G+ +A A ++A DV+I+DTAGRL + +M + + +K Sbjct: 126 VPVFRGD-GAHPVDIAKGAIQEAVDHLRDVVIVDTAGRLQIDEQMMQEAVYIKKAVK--- 181 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P VL V+DA TGQ+ + V F G+I++K+DG ARGGG + + P+ Sbjct: 182 ---PDQVLMVVDAMTGQDIVNVVSTFAERTDFDGVIISKLDGDARGGGALSVRQVTGKPI 238 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ +GE + LEPF + I G D Sbjct: 239 KFVSMGEKPDSLEPFYPDRMAKRILGMGD 267 >gi|304373199|ref|YP_003856408.1| Signal recognition particle protein [Mycoplasma hyorhinis HUB-1] gi|304309390|gb|ADM21870.1| Signal recognition particle protein [Mycoplasma hyorhinis HUB-1] Length = 445 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 87/309 (28%), Positives = 153/309 (49%), Gaps = 25/309 (8%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 L+K F + K+ T + L++ +RE ++ L+ +D+ + + + ++E+ K A Sbjct: 5 LSKRFQKSFAKMNAKTT--LKEEDLNEVIRE-IKLALLEADVNLLIVKDFIKEIKEKALA 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +++ Q+ + V+E + ++L KP ++ I++VG+ G GKTT + KL Sbjct: 62 TEITSTLNPQQQFIKIVNENLVQVLG--EKPKQIKYNRPIEKIVLVGLQGSGKTTTVAKL 119 Query: 132 S-----KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 + KK K +L A D +R AAI+QL I + V S+ S + Sbjct: 120 AHFSLRKKHIQ---KPLLIAADIYRPAAIEQL-IQLGKQINIPVFSQKDSTPQEIVSAGL 175 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A + D++IIDTAGRL + LM + + ++ K PH + V DA +GQ+ + Sbjct: 176 DYASSNDFDLVIIDTAGRLSIDEKLMQELKDIEKIAK------PHEIFFVADALSGQDII 229 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ +G I+TK+D ARGG + ++ KIP+ F+G GE I + + F Sbjct: 230 NVAKTFNENITLSGSIITKLDSDARGGAALSLIKLLKIPIVFIGTGEKITNFDLFYPDRM 289 Query: 307 SAVITGCLD 315 ++ I G D Sbjct: 290 ASRILGMGD 298 >gi|299821777|ref|ZP_07053665.1| signal recognition particle protein [Listeria grayi DSM 20601] gi|299817442|gb|EFI84678.1| signal recognition particle protein [Listeria grayi DSM 20601] Length = 453 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 104/206 (50%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V+++VG+ G GKTT GKL+ + K +L A D +R AAI QL+ + S Sbjct: 101 PTVLMMVGLQGAGKTTTTGKLANLLRKKYNRKPLLVAADIYRPAAIQQLETLGKQLSMPV 160 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 +A +A +A+ +D +IIDTAGRLH + LM + ++ V + Sbjct: 161 FSLGDQVSPVEIAKQAIAKAKEDHLDYVIIDTAGRLHIDDALMDELKQVKEV------AS 214 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P + V+D+ TGQ+A+ E F+ +G+I+TK+DG RGG + I P+ + Sbjct: 215 PDEIFLVVDSMTGQDAVNVAESFNEQLEVSGVILTKLDGDTRGGAALSIRAVTGKPIKLV 274 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GE + LE F ++ I G D Sbjct: 275 ATGEKMEALETFHPDRMASRILGMGD 300 >gi|331698510|ref|YP_004334749.1| signal recognition particle protein [Pseudonocardia dioxanivorans CB1190] gi|326953199|gb|AEA26896.1| signal recognition particle protein [Pseudonocardia dioxanivorans CB1190] Length = 509 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/281 (28%), Positives = 134/281 (47%), Gaps = 15/281 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + + + + +VS Q+V+ V+E + +L Sbjct: 28 DATAREIRIALLEADVALPVVRAFIARIKERAKGAEVSQALNPAQQVVKIVNEELIAVLG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ P VI++ G+ G GKTT+ GKL++ + G +L A D R A++Q Sbjct: 88 GETRRIAL-AKEPPSVIMLAGLQGSGKTTLAGKLARWLKGQGHTPLLVACDLQRPNAVNQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L+I +R E G+ D +A A+ K D++I+DTAGRL ++ LM Sbjct: 147 LQIVGERAGVTTFAPEPGNGVGDPVDVARRGVAHARDKMYDIVIVDTAGRLGVDAELMQQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + ++ P L V+DA GQ+A+ E F G +G+++TK+DG ARGG Sbjct: 207 ASDIRDAVR------PDETLFVVDAMIGQDAVATAEAFRDGVGFSGVVLTKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ F GE + D + F ++ I G D Sbjct: 261 ALSVREVTGQPILFASNGEKLEDFDVFHPDRMASRILGMGD 301 >gi|125983470|ref|XP_001355500.1| GA15385 [Drosophila pseudoobscura pseudoobscura] gi|54643816|gb|EAL32559.1| GA15385 [Drosophila pseudoobscura pseudoobscura] Length = 621 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 83/288 (28%), Positives = 138/288 (47%), Gaps = 41/288 (14%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP--- 102 E++ D LI ++ +A K+ + + T K V + V V E + + L+ + P Sbjct: 327 EKMRDHLISKNVASEIAVKLCDSVATSLEGKQVGTFDSVASLVKEALTQSLVRILSPKRR 386 Query: 103 -------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 + +P+ I+ GVNGVGK+T + K+ + + V++AA DTFR+ A+ Sbjct: 387 IDIIRDALECKRNGKPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAV 446 Query: 156 DQLKIWA-------------DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +QL+ +RT G DAA +A EA K A KVDV+++DTA Sbjct: 447 EQLRTHTRHLNALHPPANHNNRTMVQLYEKGYGKDAAGIAMEAIKFAHETKVDVVLVDTA 506 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259 GR+ +N LM + K+I+V + P VL V +A G A+ Q+ F+ ++A + Sbjct: 507 GRMQDNEPLMRSLSKLIKV------NNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSN 560 Query: 260 -------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 G+++TK D + G I + P+ F+G G+ DL+ Sbjct: 561 ENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLK 608 >gi|58221325|gb|AAW68305.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|58221333|gb|AAW68309.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|58221339|gb|AAW68312.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|58221343|gb|AAW68314.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|58221345|gb|AAW68315.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|58221347|gb|AAW68316.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|58221349|gb|AAW68317.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|58221351|gb|AAW68318.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|58221353|gb|AAW68319.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|58221355|gb|AAW68320.1| regulatory protein PilA [Neisseria gonorrhoeae] gi|193735104|gb|ACF20061.1| regulatory protein [Neisseria gonorrhoeae] gi|193735108|gb|ACF20063.1| regulatory protein [Neisseria gonorrhoeae] Length = 140 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 78/118 (66%), Gaps = 1/118 (0%) Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 + E ++ ++ PL KP + P VI++ G+NG GKTT IGKL+K G V+LAAG Sbjct: 22 LKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAG 81 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 DTFR+AA +QL+ W R + V S+ D+AA+ ++A + A+A+ +D+++ DTAGRL Sbjct: 82 DTFRAAAREQLQAWGGRNNVT-VISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRL 138 >gi|15791232|ref|NP_281056.1| signal recognition particle [Halobacterium sp. NRC-1] gi|169236988|ref|YP_001690188.1| signal recognition particle 54K protein [Halobacterium salinarum R1] gi|12230636|sp|Q9HMN5|SRP54_HALSA RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|229558602|sp|B0R7X3|SRP54_HALS3 RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|10581860|gb|AAG20536.1| signal recognition particle [Halobacterium sp. NRC-1] gi|167728054|emb|CAP14842.1| signal recognition particle 54K protein [Halobacterium salinarum R1] Length = 460 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 87/281 (30%), Positives = 131/281 (46%), Gaps = 24/281 (8%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS--------VQRVLYDVSELIHK 94 D V +E++ L+++D+ V + + E + + ++ V R++Y+ EL+ Sbjct: 29 DKVVKEIQRSLLQADVDVDLVMDLSESITERSLEEEPPGGTSARDHVLRIVYE--ELVG- 85 Query: 95 MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 L+ S P + I++ G+ G GKTT K++ S GL+ + DTFR A Sbjct: 86 -LVGDSTPIPLE----EQTIMLAGLQGSGKTTTAAKMAWWFSKKGLRPAIVQTDTFRPGA 140 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 +Q ADR DF D +A + A DV I+DTAGR L+A Sbjct: 141 YEQAAEMADRAEVDFYGEPDSDDPVQIARDGL--AATADADVHIVDTAGRHALEDDLIAE 198 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 I ++ V P L VLDA GQ A +Q F A G G+ +TK+DGTA+GGG Sbjct: 199 IEEIEGV------VEPDRSLLVLDAAIGQGAKQQARQFDASIGIDGVAITKLDGTAKGGG 252 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + V + FLG GE + D+E F F + + G D Sbjct: 253 SLTAVNETDSTIAFLGSGETVQDIERFEPDSFISRLLGMGD 293 >gi|325269145|ref|ZP_08135765.1| signal recognition particle protein [Prevotella multiformis DSM 16608] gi|324988532|gb|EGC20495.1| signal recognition particle protein [Prevotella multiformis DSM 16608] Length = 453 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 85/266 (31%), Positives = 138/266 (51%), Gaps = 17/266 (6%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL- 99 V E L+D+ L+ +D+ VA+ + + K +V + + + +++H L L Sbjct: 27 VAETLKDVRRALLDADVNYKVAKSFTDTVKQKALGMNVLTAVKPGQLMVKIVHDELAELM 86 Query: 100 -SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQ 157 + + S RP VIL+ G+ G GKTT GKL+ + K +L A D +R AA++Q Sbjct: 87 GGEAVGLNLSGRPAVILMSGLQGSGKTTFSGKLANMLKTKEHKNPLLVACDVYRPAAVEQ 146 Query: 158 LKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 LK+ + A V SE G+ + +A A +A+A+ DV+IIDTAGRL + +M I Sbjct: 147 LKVVGGQVGAP-VYSEPGNKNVNEIADHAIAEAKARGNDVVIIDTAGRLAVDEEMMDEI- 204 Query: 217 KMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 + L H P L V+D+ TGQ+A+ + F+ G+++TK+DG RGG Sbjct: 205 ------ESLKNHVNPDETLFVVDSMTGQDAVNTAKEFNDRLDFNGVVLTKLDGDTRGGAA 258 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPF 301 + I P+ F+G GE + ++ F Sbjct: 259 LSIRTVVTKPIKFIGTGEKMEAVDVF 284 >gi|238916984|ref|YP_002930501.1| signal recognition particle, subunit SRP54 [Eubacterium eligens ATCC 27750] gi|238872344|gb|ACR72054.1| signal recognition particle, subunit SRP54 [Eubacterium eligens ATCC 27750] Length = 448 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 87/307 (28%), Positives = 147/307 (47%), Gaps = 21/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ ++ RL + V+ L+++ L+ +D+ V ++ ++ + + Sbjct: 3 FDSLSEKLQNIFKNLRGKGRLSEADVKAALKEVKLALLEADVNFKVVKQFIKSVEERAIG 62 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V+E + ++ + VI++ G+ G GKTT KL Sbjct: 63 QDVMSSLTPGQMVIKIVNEEMVSLMGSETTEIALKPGSEITVIMMAGLQGAGKTTTTAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + K G K +L A D +R AAI+QL I ++ + +A A A+ Sbjct: 123 AGKFKAKGRKPLLVACDVYRPAAIEQLTINGNKQGVEVFSMGTNQKPVDIAKAAIAHAKN 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ---VLDATTGQNALRQ 248 + +I+DTAGRLH + +M + +D A SV Q V+D+ TGQ+A+ Sbjct: 183 NDFNTVILDTAGRLHVDEDMMNEL---------IDIKANVSVDQTILVVDSMTGQDAVNV 233 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 F+ G G+I+TK+DG RGG + I P+ ++G+GE ++DLE F ++ Sbjct: 234 ASSFNEKVGIDGVILTKLDGDTRGGAALSIKAVTGKPILYVGMGEKLSDLEQFYPDRMAS 293 Query: 309 VITGCLD 315 I G D Sbjct: 294 RILGMGD 300 >gi|330444666|ref|YP_004377652.1| signal recognition particle protein [Chlamydophila pecorum E58] gi|328807776|gb|AEB41949.1| signal recognition particle protein [Chlamydophila pecorum E58] Length = 449 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 99/312 (31%), Positives = 147/312 (47%), Gaps = 24/312 (7%) Query: 12 SWIRKLTKGFAS--TSLKLKEGITDIISSRRLDDGVREELED----LLIRSDIGVAVAQK 65 S RKL+ F+S TS ++ E +I SS R VR L D + D V QK Sbjct: 4 SLARKLSSIFSSLATSQRITE--ENIASSIR---EVRLALLDADVYYPVVKDFIAKVKQK 58 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 ++ E + K + R L++ EL L+ S P V+L+ G+ G GKT Sbjct: 59 VIGEKVWKHVSPGQQFIRCLHE--ELT--TLLGNSDKEELIIQGNPSVVLLCGLQGAGKT 114 Query: 126 TVIGKLSKKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 T KL+ + + G KV++ D R AA+DQLK +T AD SE G + + Sbjct: 115 TTCAKLASYVIEEGKAKKVLVVPCDRKRFAAVDQLKTLIAQTQADLYQSE-GGNPVEITR 173 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 EA + A+A D ++IDTAGRLH + LM+ + + +V L V++ GQ Sbjct: 174 EALEYAKAYNYDFVLIDTAGRLHLDDELMSELASIQKV------SQAKERLFVMNLAMGQ 227 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 +A+ + F + TG+I++ DG AR G ++ + P+ F G GE I DL F Sbjct: 228 DAVATAQAFDDLLDLTGVIISMTDGDARAGAILSMKSVLGKPIKFEGCGERIRDLRLFNP 287 Query: 304 KDFSAVITGCLD 315 + I G D Sbjct: 288 ASMADRILGMGD 299 >gi|315930434|gb|EFV09500.1| signal recognition particle-docking protein FtsY [Campylobacter jejuni subsp. jejuni 305] Length = 152 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 56/148 (37%), Positives = 87/148 (58%), Gaps = 3/148 (2%) Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 D V + G D +A+ ++ +A+AK D +IIDTAGRL N L + K++R+ + Sbjct: 4 DIVLTAQGHDPSAVTFDTISKAKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALE 63 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 APH + VLD T G + Q + F+ + G+I+TK+DGTA+GG L I ++P++ Sbjct: 64 GAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIF 123 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 ++GVGE + DL+ F A SA + LD Sbjct: 124 YVGVGEQMTDLQEFNA---SAYLDTLLD 148 >gi|58221319|gb|AAW68302.1| regulatory protein PilA [Neisseria gonorrhoeae] Length = 140 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 50/118 (42%), Positives = 77/118 (65%), Gaps = 1/118 (0%) Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 + E ++ ++ PL KP + P VI++ G+NG GKTT IGKL+K G V+LAAG Sbjct: 22 LKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAG 81 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 DTFR+AA +QL+ W R + + G D+AA+ ++A + A+A+ +D+++ DTAGRL Sbjct: 82 DTFRAAAREQLQAWGGRNNVTVISQATG-DSAAVCFDAVQAAKARGIDIVLADTAGRL 138 >gi|242033617|ref|XP_002464203.1| hypothetical protein SORBIDRAFT_01g014055 [Sorghum bicolor] gi|241918057|gb|EER91201.1| hypothetical protein SORBIDRAFT_01g014055 [Sorghum bicolor] Length = 471 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 90/283 (31%), Positives = 140/283 (49%), Gaps = 21/283 (7%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT----KRYAKDVSVQRVLYD--V 88 ++ + LDD + E+ L+++D+ +++ + + + A + +RV++ V Sbjct: 17 LVDQKVLDDCL-NEISRALLQADVRFETVRRVQASIKSTVNLQALADGTNKRRVIHRAVV 75 Query: 89 SELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAA 146 +EL + L P F +P V++ VG+ G GKTT K + GL L Sbjct: 76 AEL-RRTLDPGKPSFAPTKGRKPASVVMFVGLQGSGKTTTCVKYADYHRRHKGLSPALVC 134 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA---FKQAQAKKVDVLIIDTAG 203 DTFR+ A DQLK A + F S SD +A E F+ A D++++DT+G Sbjct: 135 ADTFRAGAFDQLKQNATKAGIPFYGSHTESDPVKVAVEGVDRFRNEDA--CDLIVVDTSG 192 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 R + L+ + ++ D P V+ V+DA+ GQ A +Q + F A +I+ Sbjct: 193 RHRQEAALLEEMRQVA------DATRPDLVVFVMDASIGQAAFQQAQAFRQSAPVGAVIV 246 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TKMDG A+GGG + V K PV F+G GE I DLE F AK F Sbjct: 247 TKMDGHAKGGGALSAVAATKSPVIFIGTGEHIPDLEAFDAKSF 289 >gi|148261145|ref|YP_001235272.1| signal recognition particle protein [Acidiphilium cryptum JF-5] gi|146402826|gb|ABQ31353.1| signal recognition particle subunit FFH/SRP54 (srp54) [Acidiphilium cryptum JF-5] Length = 457 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/215 (35%), Positives = 113/215 (52%), Gaps = 8/215 (3%) Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKI 160 P N + + P L+VG+ G GKTT GK++ + + K V+LA+ DT R AA QL Sbjct: 93 PLNLNAAS-PIPFLMVGLQGSGKTTTSGKIALLLKEKQRKKVLLASLDTQRPAAQLQLAQ 151 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A+R + G +A A + + + DV+I+DTAGRL + LM + K IR Sbjct: 152 LAERAGVASLPIVPGETPVQIARRAMETGRREVFDVVILDTAGRLAIDQALMDEV-KAIR 210 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 D AP L V+DA TGQ+AL F+ TG++MT++DG ARGG + + Sbjct: 211 -----DVTAPAETLLVVDAMTGQDALATATAFNEAVSITGIVMTRLDGDARGGAALSMRA 265 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ +G+GE ++ LEPF + + I G D Sbjct: 266 VTGAPIKLMGMGEKLDALEPFHPERIAGRILGMGD 300 >gi|326404546|ref|YP_004284628.1| signal recognition particle protein [Acidiphilium multivorum AIU301] gi|325051408|dbj|BAJ81746.1| signal recognition particle protein [Acidiphilium multivorum AIU301] Length = 462 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/215 (35%), Positives = 113/215 (52%), Gaps = 8/215 (3%) Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKI 160 P N + + P L+VG+ G GKTT GK++ + + K V+LA+ DT R AA QL Sbjct: 98 PLNLNAAS-PIPFLMVGLQGSGKTTTSGKIALLLKEKQRKKVLLASLDTQRPAAQLQLAQ 156 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A+R + G +A A + + + DV+I+DTAGRL + LM + K IR Sbjct: 157 LAERAGVASLPIVPGETPVQIARRAMETGRREVFDVVILDTAGRLAIDQALMDEV-KAIR 215 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 D AP L V+DA TGQ+AL F+ TG++MT++DG ARGG + + Sbjct: 216 -----DVTAPAETLLVVDAMTGQDALATATAFNEAVSITGIVMTRLDGDARGGAALSMRA 270 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ +G+GE ++ LEPF + + I G D Sbjct: 271 VTGAPIKLMGMGEKLDALEPFHPERIAGRILGMGD 305 >gi|253797996|ref|YP_003030997.1| signal recognition particle protein ffh [Mycobacterium tuberculosis KZN 1435] gi|289553295|ref|ZP_06442505.1| signal recognition particle protein ffh [Mycobacterium tuberculosis KZN 605] gi|297635534|ref|ZP_06953314.1| signal recognition particle protein [Mycobacterium tuberculosis KZN 4207] gi|297732533|ref|ZP_06961651.1| signal recognition particle protein [Mycobacterium tuberculosis KZN R506] gi|313659865|ref|ZP_07816745.1| signal recognition particle protein [Mycobacterium tuberculosis KZN V2475] gi|253319499|gb|ACT24102.1| signal recognition particle protein ffh [Mycobacterium tuberculosis KZN 1435] gi|289437927|gb|EFD20420.1| signal recognition particle protein ffh [Mycobacterium tuberculosis KZN 605] gi|328457770|gb|AEB03193.1| signal recognition particle protein ffh [Mycobacterium tuberculosis KZN 4207] Length = 525 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 148/311 (47%), Gaps = 23/311 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + + RL D E+ L+ +D+ + V + + + + Sbjct: 2 FESLSDRLTAALQGLRGKGRLTDADIDATTCEIRLALLEADVSLPVVRAFIHRIKERARG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L ++ + + P V+++ G+ G GKTT+ GKL Sbjct: 62 AEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTP-PTVVMLAGLQGSGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184 + ++ G +L A D R AA++QL++ +R G+ D A+A Sbjct: 121 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAA 180 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 +A+AK DV+I+DTAGRL + LMA IR D P VL VLDA GQ+ Sbjct: 181 GLAEARAKHFDVVIVDTAGRLGIDEELMA-QAAAIR-----DAINPDEVLFVLDAMIGQD 234 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ F G TG+ +TK+DG ARGG + + +P+ F GE + D + F Sbjct: 235 AVTTAAAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294 Query: 305 DFSAVITGCLD 315 ++ I G D Sbjct: 295 RMASRILGMGD 305 >gi|123420898|ref|XP_001305857.1| SRP54-type protein [Trichomonas vaginalis G3] gi|121887399|gb|EAX92927.1| SRP54-type protein, putative [Trichomonas vaginalis G3] Length = 490 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 139/302 (46%), Gaps = 24/302 (7%) Query: 27 KLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIG----VAVAQKIVEELLTKRYAKD 78 KL I + S+++D+ V E+ LI +D+ + ++++ E++ Sbjct: 8 KLIGSIKKLSESKKIDETVYRNFMIEISKSLIAADVSKEIVFSFSKRLREKINFNEIPPG 67 Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-----HVILVVGVNGVGKTTVIGKLSK 133 +S +RV + + + L+ L P +++P ++ ++VG+ G GKTT + KL+ Sbjct: 68 LSAKRV---IEKAVFNELVTLINP--GMTAYKPIKKKLNIFMMVGLQGAGKTTTVTKLAN 122 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 K + A DTFR+ A +QL A + SD +A + + + +K Sbjct: 123 YYKRRNWKTGVIAADTFRAGAREQLMQNAQTARIPYFVDFTESDPVQVALKGIDKFKKEK 182 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 ++ IIDT+GR L A + + + P ++ V+D T GQ A Q F Sbjct: 183 FEIAIIDTSGRHMQEEALFAEMKSLAENV------VPDEIIFVMDGTIGQAAYDQALGFK 236 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313 G +I+TK+D A+GGG + V + P+ F+G GE DLE F F + + G Sbjct: 237 NAVGVGSIIITKLDSNAKGGGALSAVAATQSPISFIGSGENFTDLEWFDPSSFVSRLLGI 296 Query: 314 LD 315 D Sbjct: 297 AD 298 >gi|295397866|ref|ZP_06807929.1| signal recognition particle protein [Aerococcus viridans ATCC 11563] gi|294973911|gb|EFG49675.1| signal recognition particle protein [Aerococcus viridans ATCC 11563] Length = 484 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 108/209 (51%), Gaps = 13/209 (6%) Query: 111 PHVILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P VI++ G+ G GKTT +GKL+ K +D K +L AGD +R AAI+QL+ + D Sbjct: 101 PTVIMMAGLQGAGKTTTVGKLAAFLKKNDHK-KPLLVAGDIYRPAAINQLQTIGQQL--D 157 Query: 169 FVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 +G + +A +A + A+ D++ IDTAGRL + LM + + ++ Sbjct: 158 LPVFTLGDQVSPVEIATQAIEYAKMNGHDLVFIDTAGRLQIDERLMTELKDIKAAVE--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P +L +D+ TGQ A + F TG+++TK+DG RGG + IV P+ Sbjct: 215 ---PDEILLTVDSMTGQEAANVAKAFDEELDITGVVLTKLDGDTRGGAALSIVSVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F G GE +N++E F + I G D Sbjct: 272 KFTGTGEKLNEIERFYPDRMANRILGMGD 300 >gi|167043460|gb|ABZ08157.1| putative SRP54-type protein, GTPase domain protein [uncultured marine microorganism HF4000_APKG2H5] Length = 504 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 89/270 (32%), Positives = 128/270 (47%), Gaps = 13/270 (4%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPLSKPFNWD 106 L L+ +D V ++++ E + +R ++ + D LI+ L+ L P Sbjct: 87 LRKALLEADFNVRHSKELTERI-ERRMLEEEPRPGIKLDTHAMNLIYAELVRLLGPAREI 145 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 H IL+VG+ G GKTT KL+ GLKV + D R A +QL+ + T Sbjct: 146 MPHN-QTILMVGLYGQGKTTTTAKLADWWRRRHGLKVAVIEADAHRPGAYEQLQQLLEGT 204 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + D SDA + + DVLIIDTAGR + L + ++ V Sbjct: 205 NVDVYGEPGESDATKIVRNGIRNVGT--ADVLIIDTAGRDGLDDELRDELVRIAEV---- 258 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 +A L V+DA GQ A + FH + G TG I+TK+DGTARGGG + V T P Sbjct: 259 -ANATECFL-VIDAQVGQAAGPVAQSFHELVGVTGTIVTKLDGTARGGGALSAVATTGAP 316 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + F+G GE I DLE F + F + + G D Sbjct: 317 IVFVGEGERIQDLELFESDRFISRLLGLGD 346 >gi|121602489|ref|YP_988406.1| signal recognition particle protein [Bartonella bacilliformis KC583] gi|120614666|gb|ABM45267.1| signal recognition particle protein [Bartonella bacilliformis KC583] Length = 515 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 108/206 (52%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P V++++G+ G GKTT KL+K+++D KV++A+ DT R AA +QL+ ++ Sbjct: 100 PVVVMLIGLQGSGKTTTTAKLAKRLTDKHNKKVLMASLDTRRPAAQEQLRQLGEQGKLAS 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G A +A A + A+ DV++ DTAGR H + LM + ++ Sbjct: 160 LPIVPGQSAVDIAVRAVQAAKLGGYDVVLFDTAGRNHIDEALMLELAQIKA------SSL 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH +L V D+ TGQ+A+ F G TG+I+T+MD RGG + + P+ + Sbjct: 214 PHEILLVADSLTGQDAVHLARSFDERVGLTGIILTRMDSDGRGGAALSMRAVTGKPIKAI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G+GE ++ LE F + I G D Sbjct: 274 GIGEKMDALEEFHPSRIADRILGMGD 299 >gi|310828469|ref|YP_003960826.1| signal recognition particle protein [Eubacterium limosum KIST612] gi|308740203|gb|ADO37863.1| signal recognition particle protein [Eubacterium limosum KIST612] Length = 448 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 107/205 (52%), Gaps = 7/205 (3%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 ++ ++VG+ G GKTT K++ + + K +L A D +R AAIDQL+I Sbjct: 102 NIFMMVGLQGAGKTTTAAKIANLLRKEKKFKPLLVACDVYRPAAIDQLEILGKELDIPVY 161 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 ++ D +A +A + A+ + +++IIDTAGRL + LM + + +L+ P Sbjct: 162 LNKDEKDPRVIAKKALEFAETEGYNLMIIDTAGRLQIDETLMNELVDLKELLE------P 215 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 +L V+D TGQ ++ + F+ TG+++TK+DG RGG + + T + ++G Sbjct: 216 TEILLVVDGMTGQESVNVADEFNRQLEITGVVLTKLDGDTRGGAALSVTYTTGKTIKYIG 275 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 GE + D+E F + I G D Sbjct: 276 TGEKLTDIELFYPDRMANRILGMGD 300 >gi|325096521|gb|EGC49831.1| signal sequence receptor alpha subunit [Ajellomyces capsulatus H88] Length = 748 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 122/246 (49%), Gaps = 36/246 (14%) Query: 40 RLDDGVREELEDLLIRSDIGVAVA--QKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKML 96 RL DGV +EL IG Q I L R A + S++++L S L + + + Sbjct: 378 RLCDGVEQEL--------IGKKTGSFQSIDAAL---RAAMESSLRKILTPTSSLDLLREI 426 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 ++ P N RP+VI +VGVNGVGK+T + K+ + +V++AA DTFRS A++ Sbjct: 427 EAVTSPSNSQKRRRPYVISIVGVNGVGKSTNLSKICFFLLQNNYRVLIAACDTFRSGAVE 486 Query: 157 QLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 QL++ A R + E G DAA +A +A A DV++IDTAGR Sbjct: 487 QLRVHA-RNLKELSARENVGQVELYEKGYGKDAANVAKDAVAYAAMNNFDVVLIDTAGRR 545 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGL 261 HN+ LM+ + K + + P + V +A G +++ Q F+ GT G Sbjct: 546 HNDQRLMSSLEKFAKFAQ------PDKIFMVGEALVGTDSVMQARNFNQAFGTGRKLDGF 599 Query: 262 IMTKMD 267 IM+K D Sbjct: 600 IMSKCD 605 >gi|183981805|ref|YP_001850096.1| signal recognition particle protein Ffh [Mycobacterium marinum M] gi|183175131|gb|ACC40241.1| signal recognition particle protein Ffh [Mycobacterium marinum M] Length = 529 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 91/311 (29%), Positives = 147/311 (47%), Gaps = 23/311 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + + RL D E+ L+ +D+ + V + V + + Sbjct: 2 FESLSDRLTGALQGLRGKGRLTDADIDATAREIRLALLEADVSLPVVRAFVHRIKERARG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 VS Q+V+ V+E + +L ++ + + P V+++ G+ G GKTT+ GKL Sbjct: 62 AVVSGALNPAQQVVKIVNEELVGILGGQTRELVFAKTP-PTVVMLAGLQGSGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184 + ++ G +L A D R AA++QL++ R G+ D A+A Sbjct: 121 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGQRAGVPVFAPHPGASPESGPGDPVAVAAA 180 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 +AQAK DV+I+DTAGRL + LMA + + + P VL VLDA GQ+ Sbjct: 181 GLAEAQAKHFDVVIVDTAGRLGIDEELMAQASAIRKAIN------PDEVLFVLDAMIGQD 234 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ + F G TG+ +TK+DG ARGG + + +P+ F GE + D + F Sbjct: 235 AVATAQAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294 Query: 305 DFSAVITGCLD 315 ++ I G D Sbjct: 295 RMASRILGMGD 305 >gi|322368150|ref|ZP_08042719.1| signal recognition 54 kDa protein [Haladaptatus paucihalophilus DX253] gi|320552166|gb|EFW93811.1| signal recognition 54 kDa protein [Haladaptatus paucihalophilus DX253] Length = 464 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 97/204 (47%), Gaps = 8/204 (3%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 IL+ G+ G GKTT K++ S GL+ + DTFR A DQ K R DF Sbjct: 98 QTILLAGLQGSGKTTTSAKMAWWFSKKGLRPAVIQTDTFRPGAYDQAKEMCSRAEVDFYG 157 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 D +A + ++ D+ I+DTAGR L+ I ++ V+ P Sbjct: 158 DPDNEDPVDIARKGLEET--ADADIHIVDTAGRHALEDDLIDEIEEIESVVD------PD 209 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 L VLDA GQ A Q + F G G+++TK+DGTA+GGG + V + FLG Sbjct: 210 RNLLVLDAAIGQGAKDQAQQFDESIGIDGVVITKLDGTAKGGGALTAVNETDSSIAFLGS 269 Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315 GE + D+E F F + + G D Sbjct: 270 GETVQDVERFEPNGFISRLLGMGD 293 >gi|225561032|gb|EEH09313.1| signal sequence receptor alpha subunit [Ajellomyces capsulatus G186AR] Length = 914 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 122/246 (49%), Gaps = 36/246 (14%) Query: 40 RLDDGVREELEDLLIRSDIGVAVA--QKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKML 96 RL DGV +EL IG Q I L R A + S++++L S L + + + Sbjct: 378 RLCDGVEQEL--------IGKKTGSFQSIDAAL---RAAMESSLRKILTPTSSLDLLREI 426 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 ++ P N RP+VI +VGVNGVGK+T + K+ + +V++AA DTFRS A++ Sbjct: 427 EAVTSPSNSQKQRRPYVISIVGVNGVGKSTNLSKICFFLLQNNYRVLIAACDTFRSGAVE 486 Query: 157 QLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 QL++ A R + E G DAA +A +A A DV++IDTAGR Sbjct: 487 QLRVHA-RNLKELSARENVGQVELYEKGYGKDAANVAKDAVAYAAVNNFDVVLIDTAGRR 545 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGL 261 HN+ LM+ + K + + P + V +A G +++ Q F+ GT G Sbjct: 546 HNDQRLMSSLEKFAKFAQ------PDKIFMVGEALVGTDSVMQARNFNQAFGTGRKLDGF 599 Query: 262 IMTKMD 267 IM+K D Sbjct: 600 IMSKCD 605 >gi|84683446|ref|ZP_01011349.1| signal recognition particle protein [Maritimibacter alkaliphilus HTCC2654] gi|84668189|gb|EAQ14656.1| signal recognition particle protein [Rhodobacterales bacterium HTCC2654] Length = 501 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 82/269 (30%), Positives = 136/269 (50%), Gaps = 12/269 (4%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + VA+ V + K + V+ Q+V+ V + + +L P Sbjct: 38 LLEADVSLPVARDFVRAVQDKATGQAVTKSVTPGQQVVKIVHDELVAVLTGAEDPGKLKI 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P IL+VG+ G GKTT GKL+K++ + +V++A+ D +R AA+ QL++ + Sbjct: 98 DNAPAPILMVGLQGGGKTTTTGKLAKRLKERENKRVLMASLDVYRPAAMHQLEVLGGQIG 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + G +A A +QA DV ++DTAGRL + +LM + + + + Sbjct: 158 VDVLPIVEGQKPVDIAKRAKQQATMGGYDVYLLDTAGRLQIDEVLMQEVEDVSKAVN--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P L V+D TGQ A+ E F A G +G+++T+MDG RGG + + P+ Sbjct: 215 ---PRETLLVVDGLTGQVAVEVAEEFDAKVGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+GVGE ++ LE F + I G D Sbjct: 272 RFVGVGEKLDALETFEPDRIAGRILGMGD 300 >gi|195132635|ref|XP_002010748.1| GI21534 [Drosophila mojavensis] gi|193907536|gb|EDW06403.1| GI21534 [Drosophila mojavensis] Length = 636 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 85/303 (28%), Positives = 144/303 (47%), Gaps = 44/303 (14%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP--- 102 E++ D LI ++ +A K+ + + T K + + + V E + + L+ + P Sbjct: 342 EKMRDHLISKNVASEIAAKLCDSVATSLEGKQMGTFDSIANMVKEALTQSLVRILSPKRR 401 Query: 103 -------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 + RP+ I+ GVNGVGK+T + K+ + + V++AA DTFR+ A+ Sbjct: 402 IDIIRDALESKRNGRPYTIIFCGVNGVGKSTNLAKICFWLIENDFSVLIAACDTFRAGAV 461 Query: 156 DQLKIWA-------------DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +QL+ RT G DAA +A EA K A KVDV+++DTA Sbjct: 462 EQLRTHTRHLNALHPAEKHKQRTMVQLYEKGYGKDAAGIAMEAIKYAHDTKVDVVLVDTA 521 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259 GR+ +N LM + K+I+V + P VL V +A G A+ Q+ F+ ++A + Sbjct: 522 GRMQDNEPLMRSLSKLIKV------NNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSN 575 Query: 260 -------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 G+++TK D + G I + P+ F+G G+ DL+ A + +AV+ Sbjct: 576 ENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLK---AINVNAVVN 632 Query: 312 GCL 314 + Sbjct: 633 SLM 635 >gi|294815366|ref|ZP_06774009.1| Signal recognition particle protein [Streptomyces clavuligerus ATCC 27064] gi|326443719|ref|ZP_08218453.1| signal recognition particle protein [Streptomyces clavuligerus ATCC 27064] gi|294327965|gb|EFG09608.1| Signal recognition particle protein [Streptomyces clavuligerus ATCC 27064] Length = 516 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/281 (28%), Positives = 137/281 (48%), Gaps = 15/281 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + + ++ + +VS Q+V+ V+E + +L Sbjct: 28 DATAREIRIALLEADVALPVVRAFIAKVKERARGAEVSKALNPAQQVIKIVNEELVAILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + P VI++ G+ G GKTT+ GKL + G +L A D R A++Q Sbjct: 88 GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGHWLKSQGHSPLLVACDLQRPNAVNQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R + G+ D +A ++ + A+ K DV+++DTAGRL + LM Sbjct: 147 LSVVAERAGVAVYAPQPGNGVGDPVQVAKDSIEFARTKVHDVVVVDTAGRLGIDEELMRQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P +L V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I + F GE ++D + F ++ I G D Sbjct: 261 ALSIAHVTGRQIMFASNGEKLDDFDAFHPDRMASRILGMGD 301 >gi|284163555|ref|YP_003401834.1| GTP-binding signal recognition particle SRP54 G- domain protein [Haloterrigena turkmenica DSM 5511] gi|284013210|gb|ADB59161.1| GTP-binding signal recognition particle SRP54 G- domain protein [Haloterrigena turkmenica DSM 5511] Length = 463 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/207 (33%), Positives = 101/207 (48%), Gaps = 8/207 (3%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 IL+ G+ G GKTT K++ S GL+ + DTFR A +Q K R DF Sbjct: 98 QTILLAGLQGSGKTTSAAKMAWWFSTKGLRPAVIQTDTFRPGAYEQAKEMTQRAEVDFYG 157 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 + D +A + ++ + DV I+DTAGR L+ I ++ V P Sbjct: 158 NPDNDDPVEIARKGLEKT--SEADVHIVDTAGRHALEDELIDEIEEIEDVAD------PD 209 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 + L VLDA GQ A Q + F G G+++TK+DGTA+GGG + V + FLG Sbjct: 210 TSLLVLDAAIGQGAKDQAQQFDESIGIDGVVITKIDGTAKGGGALTAVDQTDSSIAFLGT 269 Query: 292 GEGINDLEPFVAKDFSAVITGCLDYGE 318 GE + D+E F F + + G D G+ Sbjct: 270 GEEVQDIERFEPDGFISRLLGMGDLGQ 296 >gi|94495531|ref|ZP_01302111.1| signal recognition particle protein [Sphingomonas sp. SKA58] gi|94424919|gb|EAT09940.1| signal recognition particle protein [Sphingomonas sp. SKA58] Length = 491 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 85/283 (30%), Positives = 146/283 (51%), Gaps = 16/283 (5%) Query: 42 DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIH 93 +D VR + ++ L+ +D+ + V ++ V++ + DV SV Q V+ VS+ + Sbjct: 24 EDDVRAAMREVRIALLEADVALPVVRQFVDQATERAVGSDVLRSVTPGQMVVKIVSDTLT 83 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRS 152 + L + D + P VI++VG+ G GKTT K++K++ + K V++A+ D R Sbjct: 84 ETLGSDTSDLMIDVTP-PAVIMMVGLQGSGKTTSTAKIAKRLKEKERKKVLMASLDVQRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AA +QL + +T + G +A A + A+ + DV+++DTAGRLH + LM Sbjct: 143 AAQEQLAVLGTQTDVATLPIIAGQQPVDIARRALQAAKLQGFDVVMLDTAGRLHVDQALM 202 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + + D P +L V+D+ TGQ+A+ F A TG+++T+MDG ARG Sbjct: 203 DEMKAVA------DVATPAEILLVVDSLTGQDAVNVATSFTAQVPLTGVVLTRMDGDARG 256 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + + P+ F G GE ++ +E F + + I G D Sbjct: 257 GAALSMRAVTGRPIKFAGTGEKLDAIELFHPQRVAQRILGMGD 299 >gi|284097824|ref|ZP_06385807.1| signal recognition particle protein [Candidatus Poribacteria sp. WGA-A3] gi|283830666|gb|EFC34793.1| signal recognition particle protein [Candidatus Poribacteria sp. WGA-A3] Length = 469 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 112/218 (51%), Gaps = 22/218 (10%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW------ 161 S P ++++VG+ G GKTT GK+++ ++ G +V+L A D R AA +QL Sbjct: 103 SQPPTIVMMVGLQGAGKTTTCGKVARVFTEQGKRVLLIAADPRRPAAAEQLAALGAGLDV 162 Query: 162 ----ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 ADR + + + E ++ + DV+I+DT GRLH + LM + + Sbjct: 163 PVHRADRALSTRL------EVVHFCSEGVRRGRDHGYDVVILDTGGRLHVDDDLMLELEQ 216 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + + P VL V DA TGQ A+ E F G TG+I+TK++G ARGG L+ Sbjct: 217 IKAAV------TPQEVLLVADAMTGQEAVNVAEQFDQRVGMTGVILTKIEGDARGGALLS 270 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + T PV +LGVGE + LEPF ++ I G D Sbjct: 271 MRATIGKPVKYLGVGEKSDALEPFHPDRMASRILGMGD 308 >gi|254780711|ref|YP_003065124.1| signal recognition particle protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040388|gb|ACT57184.1| signal recognition particle protein [Candidatus Liberibacter asiaticus str. psy62] Length = 461 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/278 (28%), Positives = 132/278 (47%), Gaps = 21/278 (7%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKMLMPL-- 99 E+ + +D+ + V Q +KR + +++L + +++H L+ + Sbjct: 33 EIRRTFLEADVSLEVVQS-----FSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLG 87 Query: 100 SKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQ 157 + D + P VI++VG+ G GKTT K++ + K+++A+ D R AA +Q Sbjct: 88 KESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQ 147 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ ++ D + +A A + A+ D +I+DTAGR H N LM I + Sbjct: 148 LRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISE 207 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + + PH +L V DA TGQ+A+ F + TG+I+T+MDG RGG + Sbjct: 208 IKSLTN------PHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALS 261 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + P+ +G GE INDLE F + I G D Sbjct: 262 MRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGD 299 >gi|327313674|ref|YP_004329111.1| signal recognition particle protein [Prevotella denticola F0289] gi|326946347|gb|AEA22232.1| signal recognition particle protein [Prevotella denticola F0289] Length = 447 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 9/199 (4%) Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWAD 163 + +RP +IL+ G+ G GKTT GKL+ + K +L A D +R AAI+QLK+ + Sbjct: 93 LNLVNRPAIILMSGLQGSGKTTFSGKLANMLKTKEHKHPLLVACDVYRPAAIEQLKVVGE 152 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + +A A +A+AK DV+IIDTAGRL + +M I + Sbjct: 153 QVGVPVYSEPDNKTVNEIADHAIAEAKAKGNDVVIIDTAGRLAVDEDMMNEI-------E 205 Query: 224 RLDPH-APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 L H P L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + I Sbjct: 206 SLKKHVTPDETLFVVDSMTGQDAVNTAKEFNDRLDFNGVVLTKLDGDTRGGAALSIRTVV 265 Query: 283 KIPVYFLGVGEGINDLEPF 301 P+ F+G GE + ++ F Sbjct: 266 TKPIKFIGTGEKMEAVDVF 284 >gi|73667168|ref|YP_303184.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ehrlichia canis str. Jake] gi|72394309|gb|AAZ68586.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ehrlichia canis str. Jake] Length = 449 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 84/276 (30%), Positives = 153/276 (55%), Gaps = 21/276 (7%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDV-SVQRVLYDVS 89 +ISS D + EE++ L+ +D+ ++V + + E+++ + K V Q ++ + Sbjct: 21 VISSEDFDSTM-EEVKIALLDADVALSVVKDFINNVKEKIVGETTVKGVLPTQMIIKKIQ 79 Query: 90 ELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 + + ++L S+ + + S +P VI++VG+ GVGKTT KL+ K+ + +V++A+ D Sbjct: 80 DCLIEILG--SEKQDLNISAKPFSVIMMVGLQGVGKTTTTAKLALKLKNKKKEVIMASLD 137 Query: 149 TFRSAAIDQLKIWA---DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 +R AA QL+I D + + ++ D A EA AQ VLI+DTAGRL Sbjct: 138 LYRPAAQKQLEILGKQIDVKTLPIIENQAPVDIVKRAMEA---AQHGNYSVLILDTAGRL 194 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 H + ++M + K I+ D P ++ V D+ GQ+A+ + F+ G TG+I+T+ Sbjct: 195 HIDQVMMEEL-KAIK-----DLSCPSEIILVADSMIGQDAVNVAKSFNDSIGITGVILTR 248 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 +DG +RGG + + ++ P+ F+ GE ++DL+ F Sbjct: 249 VDGDSRGGAALSMKMSIGSPIKFIATGEKLSDLDDF 284 >gi|298708560|emb|CBJ30645.1| SRP101, alpha subunit of the signal recognition particle receptor [Ectocarpus siliculosus] Length = 589 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/198 (31%), Positives = 107/198 (54%), Gaps = 17/198 (8%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 + + VG+NGVGK+T + K++ + + G+KV++AA DTFRS A++QL++ Sbjct: 384 YSMAFVGINGVGKSTSLAKVAYYLKENGIKVLIAACDTFRSGAVEQLRVHCRCLDVPLFE 443 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 D++A+A EA K A + D ++IDTAGR+ NN LM + K+I + + P Sbjct: 444 KGYARDSSAVAREAVKHAAEEGYDCVLIDTAGRMQNNEPLMRALSKLI------NENEPE 497 Query: 232 SVLQVLDATTGQNALRQVEMFH-AVAGTT---------GLIMTKMDG-TARGGGLIPIVV 280 VL V +A G + + Q++MF+ A+A + G+++TK D + G + + Sbjct: 498 LVLFVGEALVGNDGVNQLQMFNQALANNSPAGRYHQIDGVVLTKFDTIDTKVGAALSMCY 557 Query: 281 THKIPVYFLGVGEGINDL 298 P+ F+G G+ L Sbjct: 558 KTGQPILFVGTGQKYTHL 575 >gi|148298802|ref|NP_001091807.1| signal recognition particle receptor alpha subunit [Bombyx mori] gi|111608125|gb|ABH10806.1| signal recognition particle receptor alpha subunit [Bombyx mori] Length = 610 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 86/294 (29%), Positives = 140/294 (47%), Gaps = 41/294 (13%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP- 98 V ++L D LI ++ +A K+ + + K K D + V ++E + ++L P Sbjct: 314 VLDKLRDHLIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTESLVRILSPK 373 Query: 99 -----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 L + RP+V+ GVNGVGK+T + K+ + + L V++AA DTFR+ Sbjct: 374 RRVDILRDCLHAKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAG 433 Query: 154 AIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 A++QL+ +A G DAA +A EA + A K DV++ID Sbjct: 434 AVEQLRTHTRHLNALHPPARHHARHMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLID 493 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT 259 TAGR+ +N LM + K+I V + P +VL V +A G A+ Q+ F+ A+A + Sbjct: 494 TAGRMQDNEPLMRALAKLIAV------NEPDTVLFVGEALVGNEAVDQLVKFNQALADYS 547 Query: 260 ---------GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 G+++TK D + G I + P+ F+G G+ DL+ A Sbjct: 548 SSSSPHVIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKALNA 601 >gi|123492715|ref|XP_001326126.1| SRP54-type protein [Trichomonas vaginalis G3] gi|121909036|gb|EAY13903.1| SRP54-type protein, putative [Trichomonas vaginalis G3] Length = 494 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 6/206 (2%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 ++ ++VG+ G GKTT + KL+ + + A DTFR+ A +QL A + Sbjct: 101 NIFMMVGLQGAGKTTTVTKLANFYKRRNWRTGVIAADTFRAGAREQLMQNAQTARIPYFV 160 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 D A + ++ + K +++IIDT+GR L A + + + PH Sbjct: 161 DFTEQDPVQAALKGIEKFRKDKYEIVIIDTSGRHMQEEALFAEMKALAAAVN------PH 214 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 ++ V+D T GQ A Q F G +I+TK+D A+GGG + V P+ F+G Sbjct: 215 EIIFVMDGTIGQAAYDQALGFKNAVGVGSIIITKLDSNAKGGGALSAVAATNSPISFIGS 274 Query: 292 GEGINDLEPFVAKDFSAVITGCLDYG 317 GE DLE F F + + G D G Sbjct: 275 GEQFTDLEWFDPNSFVSRLLGIQDPG 300 >gi|39939164|ref|NP_950930.1| signal recognition particle GTPase [Onion yellows phytoplasma OY-M] gi|39722273|dbj|BAD04763.1| signal recognition particle GTPase [Onion yellows phytoplasma OY-M] Length = 426 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/278 (28%), Positives = 141/278 (50%), Gaps = 31/278 (11%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKMLMPLSKPFNWD 106 L+ +D+ + V K E++ K+ K Q VL ++ +++++ L+ + D Sbjct: 8 LVEADVHLQVIDKF-NEIIEKKTLK----QEVLKGLNPKEHIIKIVNETLIQILGSTRAD 62 Query: 107 FSHRPHV----ILVVGVNGVGKTTVIGKLS----KKMSDAGLKVMLAAGDTFRSAAIDQL 158 + +P+ ++++G+ G GKTT +GKL+ KK S KV+L A D +R A++QL Sbjct: 63 LTFKPNCNLDTLMLIGLQGSGKTTTVGKLALWLRKKNSK---KVLLVACDIYRPGAVEQL 119 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 K+ + + D V S+ + + K A + D +IIDTAGRL + +M Sbjct: 120 KVIGKQINID-VFSKPDTAVLDIVDAGLKHALQEGYDAVIIDTAGRLDIDETMM------ 172 Query: 219 IRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + L+++ A P +L V+D +GQ + + FH G TG+I+TKMD +GG + Sbjct: 173 -QELQQIKAKANPSEILLVVDCLSGQQSANIAQSFHNQVGATGVILTKMDADTKGGAALS 231 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + +P+ F+ E I+ L+PF ++ + G D Sbjct: 232 VRAMTDLPLKFVSSSETIDSLDPFNPDRMASRLLGMGD 269 >gi|325860535|ref|ZP_08173639.1| signal recognition particle protein [Prevotella denticola CRIS 18C-A] gi|325481920|gb|EGC84949.1| signal recognition particle protein [Prevotella denticola CRIS 18C-A] Length = 456 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 9/199 (4%) Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWAD 163 + +RP +IL+ G+ G GKTT GKL+ + K +L A D +R AAI+QLK+ + Sbjct: 93 LNLVNRPTIILMSGLQGSGKTTFSGKLANMLKTKEHKHPLLVACDVYRPAAIEQLKVVGE 152 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + +A A +A+AK DV+IIDTAGRL + +M I + Sbjct: 153 QVGVPVYSEPDNKTVNEIADHAIAEAKAKGNDVVIIDTAGRLAVDEDMMNEI-------E 205 Query: 224 RLDPH-APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 L H P L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + I Sbjct: 206 SLKKHVTPDETLFVVDSMTGQDAVNTAKEFNDRLDFNGVVLTKLDGDTRGGAALSIRTVV 265 Query: 283 KIPVYFLGVGEGINDLEPF 301 P+ F+G GE + ++ F Sbjct: 266 TKPIKFIGTGEKMEAVDVF 284 >gi|219558941|ref|ZP_03538017.1| signal recognition particle protein ffh [Mycobacterium tuberculosis T17] Length = 341 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 85/280 (30%), Positives = 138/280 (49%), Gaps = 19/280 (6%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ + V + + + + +VS Q+V+ V+E + +L ++ Sbjct: 14 EIRLALLEADVSLPVVRAFIHRIKERARGAEVSSALNPAQQVVKIVNEELISILGGETRE 73 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 + + P V+++ G+ G GKTT+ GKL+ ++ G +L A D R AA++QL++ Sbjct: 74 LAFAKTP-PTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACDLQRPAAVNQLQVVG 132 Query: 163 DRTSADFVCSEIGS-------DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 +R G+ D A+A +A+AK DV+I+DTAGRL + LMA Sbjct: 133 ERAGVPVFAPHPGASPESGPGDPVAVAAAGLAEARAKHFDVVIVDTAGRLGIDEELMAQ- 191 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 IR D P VL VLDA GQ+A+ F G TG+ +TK+DG ARGG Sbjct: 192 AAAIR-----DAINPDEVLFVLDAMIGQDAVTTAAAFGEGVGFTGVALTKLDGDARGGAA 246 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + +P+ F GE + D + F ++ I G D Sbjct: 247 LSVREVTGVPILFASTGEKLEDFDVFHPDRMASRILGMGD 286 >gi|44836|emb|CAA32144.1| unnamed protein product [Neisseria gonorrhoeae] Length = 356 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 102/181 (56%), Gaps = 2/181 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 L W +L +G A + K+ + + + ++ + + EELE +LI D+G+ + +++++ Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IG Sbjct: 176 RGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K G V+LAAGDTFR+AA +QL+ W R + + G D+AA+ ++A + A Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVISQTTG-DSAAVCFDAVQAA 294 Query: 190 Q 190 + Sbjct: 295 K 295 >gi|300024816|ref|YP_003757427.1| signal recognition particle protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526637|gb|ADJ25106.1| signal recognition particle protein [Hyphomicrobium denitrificans ATCC 51888] Length = 526 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 82/274 (29%), Positives = 139/274 (50%), Gaps = 13/274 (4%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ + V + E++ K +V SV Q V+ V++ + ML ++P Sbjct: 33 EVRRALLEADVALDVVKDFTEKVKAKAVGAEVLRSVTPGQMVVKIVNDELVAMLGSDAQP 92 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIW 161 + + P IL+VG+ G GKTT K++ ++++ K V++A+ DT R AA +QL++ Sbjct: 93 IDL-HAAPPVGILMVGLQGSGKTTTTAKIAYRLTNRDRKKVLMASLDTRRPAAQEQLRVL 151 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 ++TS + G +A A A+ DV+I DTAGR+ + LM + + Sbjct: 152 GEQTSVATLPIVAGQTPLQIARRAEDAAKLGGFDVIIYDTAGRVTVDEELMDEVRDVKAA 211 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 + PH L V D+ TGQ+A+ + F G TG+++T+ DG RGG + + Sbjct: 212 IH------PHETLLVADSLTGQDAVNTAKAFDGRIGVTGIVLTRADGDGRGGAALSMRAV 265 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ +GVGE + LE F ++ I G D Sbjct: 266 TGKPIKLIGVGEKWDALEDFHPGRIASRILGMGD 299 >gi|296171453|ref|ZP_06852739.1| signal recognition particle protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894139|gb|EFG73899.1| signal recognition particle protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 522 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 93/311 (29%), Positives = 148/311 (47%), Gaps = 23/311 (7%) Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L + + RL D E+ L+ +D+ + V + V + + Sbjct: 2 FESLSDRLTGALQGLRGKGRLTDADIEATTREIRLALLEADVSLPVVRAFVTRIKDRAKG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L ++ + + P V+++ G+ G GKT++ GKL Sbjct: 62 AEVSGALNPAQQVVKIVNEELIGILGGETRQLAFAKTP-PTVVMLAGLQGSGKTSLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184 + + G +L A D R AA++QL++ +R G D A+A Sbjct: 121 AAWLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGESPESGPGDPVAVAAA 180 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 +A+AK DV+I+DTAGRL + LMA IR D P VL VLDA GQ+ Sbjct: 181 GLAEARAKHHDVVIVDTAGRLGIDDELMA-QAAAIR-----DAVDPDEVLFVLDAMIGQD 234 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ E F G TG+++TK+DG ARGG + + +P+ F GE + D + F Sbjct: 235 AVTTAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294 Query: 305 DFSAVITGCLD 315 ++ I G D Sbjct: 295 RMASRILGMGD 305 >gi|240280412|gb|EER43916.1| signal sequence receptor alpha subunit [Ajellomyces capsulatus H143] Length = 823 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 122/246 (49%), Gaps = 36/246 (14%) Query: 40 RLDDGVREELEDLLIRSDIGVAVA--QKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKML 96 RL DGV +EL IG Q I L R A + S++++L S L + + + Sbjct: 378 RLCDGVEQEL--------IGKKTGSFQSIDAAL---RAAMESSLRKILTPTSSLDLLREI 426 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 ++ P N RP+VI +VGVNGVGK+T + K+ + +V++AA DTFRS A++ Sbjct: 427 EAVTSPSNSQNRRRPYVISIVGVNGVGKSTNLSKICFFLLQNNYRVLIAACDTFRSGAVE 486 Query: 157 QLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 QL++ A R + E G DAA +A +A A DV++IDTAGR Sbjct: 487 QLRVHA-RNLKELSARENVGQVELYEKGYGKDAANVAKDAVAYAAMNNFDVVLIDTAGRR 545 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGL 261 HN+ LM+ + K + + P + V +A G +++ Q F+ GT G Sbjct: 546 HNDQRLMSSLEKFAKFAQ------PDKIFMVGEALVGTDSVMQARNFNQAFGTGRKLDGF 599 Query: 262 IMTKMD 267 IM+K D Sbjct: 600 IMSKCD 605 >gi|240851341|ref|YP_002972744.1| signal recognition particle protein [Bartonella grahamii as4aup] gi|240268464|gb|ACS52052.1| signal recognition particle protein [Bartonella grahamii as4aup] Length = 522 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 83/285 (29%), Positives = 140/285 (49%), Gaps = 35/285 (12%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSELIH-----K 94 E+ L+ +D+ + V + + + K ++ V ++++D EL+H Sbjct: 33 EIRRALLEADVALDVVRSFTDRVREKAVGAEIVKSIKPGQMVVKIVHD--ELVHILGNES 90 Query: 95 MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSA 153 +L L+ P P VI+++G+ G GKTT KL+K+ +D KV++A+ DT R A Sbjct: 91 VLSDLNAPA-------PVVIMMIGLQGSGKTTTTAKLAKRFTDKHHKKVLMASLDTRRPA 143 Query: 154 AIDQLKIWADRT---SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 A +QL+ ++ S + ++ D A+ A +A A+ DVL++DTAGR H + Sbjct: 144 AQEQLRQLGEQAKLASLPIIAGQLPVDIASRAVQA---AKLGGYDVLLLDTAGRNHIDEA 200 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + ++ PH ++ V D+ TGQ+A+ F G TG+I+T+MD Sbjct: 201 LMLELAEIKAC------SLPHEIMLVADSLTGQDAVHLARSFDERVGITGIILTRMDSDG 254 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + + P+ +G GE I+ LE F + I G D Sbjct: 255 RGGAALSMRAVTGKPIKAIGTGEKIDALEEFHPSRIADRILGMGD 299 >gi|194762610|ref|XP_001963427.1| GF20395 [Drosophila ananassae] gi|190629086|gb|EDV44503.1| GF20395 [Drosophila ananassae] Length = 628 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 85/303 (28%), Positives = 144/303 (47%), Gaps = 44/303 (14%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP--- 102 E++ D LI ++ +A K+ + + + K + + V V E + + L+ + P Sbjct: 334 EKMRDHLISKNVAAEIAAKLCDSVASSLEGKQMGTFDSVAGQVKEALTQSLVRILSPKRR 393 Query: 103 -------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 + RP+ I+ GVNGVGK+T + K+ + + V++AA DTFR+ A+ Sbjct: 394 IDIIRDALESKRNGRPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAV 453 Query: 156 DQLKIWAD-------------RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +QL+ RT G DAA +A EA K A KVDV+++DTA Sbjct: 454 EQLRTHTRHLNALHPATKHNGRTMVQLYEKGYGKDAAGIAMEAIKFAHDTKVDVVLVDTA 513 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259 GR+ +N LM + K+I+V + P VL V +A G A+ Q+ F+ ++A + Sbjct: 514 GRMQDNEPLMRSLSKLIKV------NNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSN 567 Query: 260 -------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 G+++TK D + G I + P+ F+G G+ DL+ A + +AV+ Sbjct: 568 ENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLK---AINVTAVVN 624 Query: 312 GCL 314 + Sbjct: 625 SLM 627 >gi|257052337|ref|YP_003130170.1| GTP-binding signal recognition particle SRP54 G- domain protein [Halorhabdus utahensis DSM 12940] gi|256691100|gb|ACV11437.1| GTP-binding signal recognition particle SRP54 G- domain protein [Halorhabdus utahensis DSM 12940] Length = 469 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 69/205 (33%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P I++ G+ G GKTT K++ S GL+ + DT+R A +Q + A+R DF Sbjct: 97 PQTIVLAGLQGSGKTTSAAKIAWWFSKKGLRPAVIQTDTWRPGAYEQAEEMAERAEVDFY 156 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 DA +A + + DV I+DTAGR +++ I ++ + DP Sbjct: 157 GDPDEDDAVKIARDGLEAT--DDADVQIVDTAGR---HALEDGLIDELEDIESVADPD-- 209 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 H++L VLDA GQ A Q F G G+++TK+DGTA+GGG + V + FLG Sbjct: 210 HNLL-VLDAAIGQEAKEQASRFEDAVGIDGVVITKLDGTAKGGGALVAVNETDSTIAFLG 268 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 GE + D+E F F + + G D Sbjct: 269 TGETVKDVERFEPSGFISRLLGMGD 293 >gi|255513329|gb|EET89595.1| GTP-binding signal recognition particle SRP54 G- domain [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 431 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 143/295 (48%), Gaps = 24/295 (8%) Query: 28 LKEGITDIISSRRLD-DGVRE---ELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDV 79 L++ I I S +D + +RE EL+ L+ +D+ V + + I E+ L + + Sbjct: 7 LRQAIAKISRSTIIDVNTIREFSKELQKTLLMADVEVNLVAEFTKSIQEQALKSKPPPGL 66 Query: 80 SVQRVLYDVSELIHKMLMPL-SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138 + ++ ++++ L L K + S + IL+ G+ G GKTT KL+K D Sbjct: 67 DPREY---ITNMVYEELTKLMGKTYEPQISKK--RILLAGLYGSGKTTTAAKLAKYYQDR 121 Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 GL + D R AA QL+ A + + F + D + + + K V+I Sbjct: 122 GLSAGVICCDVTRPAAYQQLETLAKQANVAFFGIKDSKDPVKIVKSGLEAMKGK--GVVI 179 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257 DT+GR S L A ++ LKR+ D AP + V+ A GQ A RQ F Sbjct: 180 CDTSGR----SALDAN---LVEELKRVSDAFAPEEKVLVVSADIGQVAGRQAREFAKAIS 232 Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +G+I+TKMDG+A+GGG + PV F+G GE I+++EPF ++ F + G Sbjct: 233 ISGVIVTKMDGSAKGGGALSAANAAHAPVMFIGTGEKISNIEPFDSEKFIGELLG 287 >gi|58221315|gb|AAW68300.1| regulatory protein PilA [Neisseria gonorrhoeae] Length = 140 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 50/118 (42%), Positives = 77/118 (65%), Gaps = 1/118 (0%) Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 + E ++ ++ PL KP + P VI++ G+NG GKTT IGK +K G V+LAAG Sbjct: 22 LKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKFAKYFQAQGKSVLLAAG 81 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 DTFR+AA +QL+ W R + V S+ D+AA+ ++A + A+A+ +D+++ DTAGRL Sbjct: 82 DTFRAAAREQLQAWGGRNNVT-VISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRL 138 >gi|329770523|ref|ZP_08261901.1| signal recognition particle protein [Gemella sanguinis M325] gi|328836272|gb|EGF85941.1| signal recognition particle protein [Gemella sanguinis M325] Length = 450 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 86/305 (28%), Positives = 149/305 (48%), Gaps = 20/305 (6%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L+ I + ++ + V+E + ++ L+ +D+ V ++ V+++ + Sbjct: 3 FENLSERLQNTIAKLTGKGKVSESDVKEMMREVRLALLEADVNFKVVKEFVKKISERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V Q+++ V+E + ++L + N + +++VG+ G GKTT GKL Sbjct: 63 TEVMKSLTPAQQIVKIVNEELVELLGGTNVELNQ--GGKITTVMMVGLQGAGKTTTAGKL 120 Query: 132 S-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 + K K +L A D +R AA+ QLK + D + D A + E + A+ Sbjct: 121 ALKAKKTMKKKPLLIAADVYRPAAVQQLKTLGKQL--DIEVFFVDKDPADIVKEGLEFAK 178 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + +IIDTAGRLH + +LM + + V P +L V+DA GQ A+ Sbjct: 179 ENYYNYVIIDTAGRLHIDELLMDELKDIKSV------SNPDEILLVVDAMIGQEAVNIAT 232 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F TGL++TK+DG RGG + I P+ +G+GE +NDLE F + ++ I Sbjct: 233 SFDEQLDITGLVLTKLDGDTRGGAALSIKSITGKPIKLVGMGEKMNDLELFHPERMASRI 292 Query: 311 TGCLD 315 G D Sbjct: 293 LGMGD 297 >gi|195048490|ref|XP_001992537.1| GH24806 [Drosophila grimshawi] gi|193893378|gb|EDV92244.1| GH24806 [Drosophila grimshawi] Length = 628 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 84/303 (27%), Positives = 145/303 (47%), Gaps = 44/303 (14%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP--- 102 E++ D LI ++ +A K+ + + T K + + + V E + + L+ + P Sbjct: 334 EKMRDHLISKNVASEIAGKLCDSVATSLEGKQMGTFDSIANMVKEALTQSLVRILSPKRR 393 Query: 103 -------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 + RP+ I+ GVNGVGK+T + K+ + + V++AA DTFR+ A+ Sbjct: 394 IDIIRDALESKRNGRPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAV 453 Query: 156 DQLKIWA-------------DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +QL+ +RT G DAA +A EA K A K+DV+++DTA Sbjct: 454 EQLRTHTRHLNALHPAVKHNNRTMVQLYEKGYGKDAAGIAMEAIKFANDTKIDVVLVDTA 513 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259 GR+ +N LM + K+I+V + P VL V +A G A+ Q+ F+ ++A + Sbjct: 514 GRMQDNEPLMRSLSKLIKV------NNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSN 567 Query: 260 -------GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 G+++TK D + G I + P+ F+G G+ DL+ A + +AV+ Sbjct: 568 ENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLK---AINVNAVVN 624 Query: 312 GCL 314 + Sbjct: 625 SLM 627 >gi|148508291|gb|ABQ76075.1| signal recognition particle 54K protein [uncultured haloarchaeon] Length = 465 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 69/210 (32%), Positives = 99/210 (47%), Gaps = 8/210 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 D + IL+ G+ G GKTT K++ S GL+ + DTFR A DQ + +R Sbjct: 92 DLPLKSQTILLAGLQGSGKTTSAAKMAWWFSTKGLRPAVIQTDTFRPGAYDQAEQMCERA 151 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 F D +A E + D+ I+DTAGR + L+ I + + Sbjct: 152 EVSFYGDPDCDDPVKIAREGIEAT--ADADIHIVDTAGRHALEADLIDEIEAIDSTV--- 206 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 AP L VLDA GQ A +Q F+ G G+++TK+DGTA+GGG + V Sbjct: 207 ---APDRSLLVLDAAIGQGAKQQAREFNNAIGIDGVVVTKLDGTAKGGGALTAVNETDSS 263 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + FLG GE + D+E F F + + G D Sbjct: 264 IAFLGTGETVQDVERFEPNGFISRLLGMGD 293 >gi|110669292|ref|YP_659103.1| signal recognition particle 54K protein [Haloquadratum walsbyi DSM 16790] gi|121687082|sp|Q18EV2|SRP54_HALWD RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|109627039|emb|CAJ53515.1| signal recognition particle 54K protein [Haloquadratum walsbyi DSM 16790] Length = 466 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 69/210 (32%), Positives = 99/210 (47%), Gaps = 8/210 (3%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 D + IL+ G+ G GKTT K++ S GL+ + DTFR A DQ + +R Sbjct: 92 DLPLKSQTILLAGLQGSGKTTSAAKMAWWFSTKGLRPAVIQTDTFRPGAYDQAEQMCERA 151 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 F D +A E + D+ I+DTAGR + L+ I + + Sbjct: 152 EVSFYGDPDCDDPVKIAREGIEAT--ADADIHIVDTAGRHALEADLIDEIEAIDSTV--- 206 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 AP L VLDA GQ A +Q F+ G G+++TK+DGTA+GGG + V Sbjct: 207 ---APDRSLLVLDAAIGQGAKQQAREFNNAIGIDGVVVTKLDGTAKGGGALTAVNETDSS 263 Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + FLG GE + D+E F F + + G D Sbjct: 264 IAFLGTGETVQDVERFEPNGFISRLLGMGD 293 >gi|302537184|ref|ZP_07289526.1| signal recognition particle protein [Streptomyces sp. C] gi|302446079|gb|EFL17895.1| signal recognition particle protein [Streptomyces sp. C] Length = 524 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/267 (29%), Positives = 134/267 (50%), Gaps = 15/267 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + + + + +VS Q+VL V++ + +L Sbjct: 28 DAAAREIRIALLEADVALPVVRSFISNVKERARGAEVSKALNPGQQVLKIVNDELVAILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + P VI++ G+ G GKTT+ GKL + G +L A D R A++Q Sbjct: 88 GETRRLRFAKTA-PTVIMLAGLQGAGKTTLAGKLGFWLKGQGHTPLLVACDLQRPNAVNQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R + G+ D +A ++ + A+AK+ D++I+DTAGRL + LM Sbjct: 147 LSVVAERAGVAVYAPQPGNGVGDPVQVAKDSVEYARAKQHDIVIVDTAGRLGIDQELMQQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P +L V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301 + I + F GE ++D + F Sbjct: 261 ALSIAHVTGKQIMFASNGEKLDDFDAF 287 >gi|90421745|ref|YP_530115.1| signal recognition particle protein [Rhodopseudomonas palustris BisB18] gi|90103759|gb|ABD85796.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rhodopseudomonas palustris BisB18] Length = 514 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P I++VG+ G GKTT KL+++++ +V++A+ D +R AA++QL I D Sbjct: 100 PVPIMMVGLQGSGKTTTTAKLARRLTQRDKRRVLMASLDVYRPAAMEQLAILGRDLEIDT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G A +A A + A+ DV+++DTAGR + +MA ++ V + Sbjct: 160 LPIVDGQKPAQIARRAIEAAKLGGYDVVLLDTAGRTTLDDEMMAEAAEIKAV------AS 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH VL V D+ TGQ+A+ F G TG+++T++DG RGG + + P+ + Sbjct: 214 PHEVLLVADSLTGQDAVNLARAFDTQVGLTGIVLTRVDGDGRGGAALSMRAVTGKPIKLM 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE + LE F + I G D Sbjct: 274 GTGEKTDALEDFHPSRIAGRILGMGD 299 >gi|14719790|pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From A. Ambivalens Length = 297 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 90/315 (28%), Positives = 147/315 (46%), Gaps = 38/315 (12%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV----AVA 63 S+ L +R + F + S + + D I +EL+ LI +D+ V ++ Sbjct: 1 SKLLDNLRDTVRKFLTGSSSYDKAVEDFI----------KELQKSLISADVNVKLVFSLT 50 Query: 64 QKIVEELLTKRYAKDVSVQ----RVLYDVSELIHKMLMPLSKPFNWDFSHR------PHV 113 KI E L ++ + + +++YD LS F D + P+V Sbjct: 51 NKIKERLKNEKPPTYIERREWFIKIVYD----------ELSNLFGGDKEPKVIPDKIPYV 100 Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 I++VGV G GKTT GKL+ G KV L D +R AA++QL+ + Sbjct: 101 IMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEP 160 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 D +A ++ ++K++++I+DTAGR H A + +M + + + P V Sbjct: 161 GEKDVVGIAKRGVEKFLSEKMEIIIVDTAGR-HGYGEEAALLEEMKNIYEAI---KPDEV 216 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 V+DA+ GQ A F+ + +I+TKMDGTA+GGG + V + F+G GE Sbjct: 217 TLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAVAATGATIKFIGTGE 276 Query: 294 GINDLEPFVAKDFSA 308 I++LE F + F A Sbjct: 277 KIDELEVFNPRRFVA 291 >gi|320589543|gb|EFX02004.1| signal sequence receptor alpha [Grosmannia clavigera kw1407] Length = 669 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 143/291 (49%), Gaps = 42/291 (14%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLT-----KRYAKDVSVQRVLYDVSELIHKMLMPLSK-- 101 +ED L+R ++ A ++ E + K + + RV + + KML P S Sbjct: 376 MEDHLLRKNVAREAAVRLCESVEADLVGVKTGNFESTNARVKTALEAALTKMLTPTSSLD 435 Query: 102 -----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 P RP+VI +VGVNGVGK+T + K+ + +V++AAGDTF Sbjct: 436 LLREIDAVTAPPVTSLRKPRPYVISIVGVNGVGKSTNLSKICFFLLQNRYRVLIAAGDTF 495 Query: 151 RSAAIDQLKI----WADRTSADFVCSEI-------GSDAAALAYEAFKQAQAKKVDVLII 199 RS A++QL + + TS D S + G DAAA+A +A A K DV++I Sbjct: 496 RSGAVEQLAVHVRNLQELTSRDQNGSAVELYQRGYGKDAAAVAKDAVAFAAQKGFDVVLI 555 Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 DTAGR HN+ LM+ + K + P +L V +A G +++ Q F++ G+ Sbjct: 556 DTAGRRHNDQRLMSSLEKFAKFAH------PDKILMVGEALVGTDSVAQARSFNSAFGSN 609 Query: 260 ----GLIMTKMDGTARG--GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 G I++K D T G G L+ +V +P+ F+GVG+ +DL F K Sbjct: 610 RSLDGFIISKCD-TVGGMVGTLVSLVHATNVPILFVGVGQHYSDLRNFSVK 659 >gi|189236353|ref|XP_001807129.1| PREDICTED: similar to signal recognition particle receptor alpha subunit (sr-alpha) [Tribolium castaneum] gi|270005877|gb|EFA02325.1| hypothetical protein TcasGA2_TC007993 [Tribolium castaneum] Length = 614 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 85/293 (29%), Positives = 140/293 (47%), Gaps = 41/293 (13%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP--- 98 ++++D LI ++ +A K+ E + K K + V ++E + ++L P Sbjct: 320 DKMKDHLIAKNVAADIAIKLCESVALKLEGKVLGTFESVASTVKSTLTESLVQILSPKRR 379 Query: 99 ---LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 L S RP+V+ GVNGVGK+T + K+ + + ++V++AA DTFR+ A+ Sbjct: 380 VDILRDCMEAQRSGRPYVMTFCGVNGVGKSTNLAKICFWLIENNMRVLIAACDTFRAGAV 439 Query: 156 DQLKI-------------WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +QL+ R G DAA +A EA K A + DV++IDTA Sbjct: 440 EQLRTHMRHLNALHPPERHGGRQMVQLYEKGYGKDAAGIAMEAIKYATDSRFDVVLIDTA 499 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259 GR+ +N LM + K+I+V + P VL V +A G A+ Q+ F+ A+A + Sbjct: 500 GRMQDNEPLMRALTKLIKV------NEPDLVLFVGEALVGNEAVDQLVKFNQALADYSSS 553 Query: 260 -------GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 G+++TK D + G I + P+ F+G G+ DL+ AK Sbjct: 554 SNPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKALNAK 606 >gi|195479500|ref|XP_002100909.1| Gtp-bp [Drosophila yakuba] gi|194188433|gb|EDX02017.1| Gtp-bp [Drosophila yakuba] Length = 617 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 137/288 (47%), Gaps = 41/288 (14%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP--- 102 E++ D LI ++ +A K+ + + T K + + + V E + + L+ + P Sbjct: 323 EKMRDHLISKNVATEIAAKLCDSVATSLDGKQMGTFDSIASQVKEALTQSLVRILSPKRR 382 Query: 103 -------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 + RP+ I+ GVNGVGK+T + K+ + + V++AA DTFR+ A+ Sbjct: 383 IDIIRDALESKRNGRPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAV 442 Query: 156 DQLKIWAD-------------RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +QL+ RT G DAA +A EA K A +VDV+++DTA Sbjct: 443 EQLRTHTRHLNALHPAAKHDGRTMVQLYEKGYGKDAAGIAMEAIKFAHDTRVDVVLVDTA 502 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259 GR+ +N LM + K+I+V + P VL V +A G A+ Q+ F+ ++A + Sbjct: 503 GRMQDNEPLMRSLSKLIKV------NNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSN 556 Query: 260 -------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 G+++TK D + G I + P+ F+G G+ DL+ Sbjct: 557 ENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLK 604 >gi|156398259|ref|XP_001638106.1| predicted protein [Nematostella vectensis] gi|156225224|gb|EDO46043.1| predicted protein [Nematostella vectensis] Length = 625 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 86/321 (26%), Positives = 154/321 (47%), Gaps = 51/321 (15%) Query: 19 KGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78 KG A S KE I+ ++ E++++ L ++ +++K+ + + TK K Sbjct: 312 KGLAGQSTLAKEQISPVL----------EKMKEHLTSKNVAADISEKLCDSVATKLEGKV 361 Query: 79 VSV-----QRVLYDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 + V + E + ++L P L +P+V+ GVNGVGK+T Sbjct: 362 IGTFSGIASTVKSSLEESLIQILSPKRRVDILRDAMENKRKGKPYVVTFCGVNGVGKSTN 421 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-------------I 174 + K+ + + +VM+AA DTFR+ A++QL+ +A + Sbjct: 422 LAKVCFWLLENNFRVMIAACDTFRAGAVEQLRTHVRHLNALHPPAHANGPPSVLLYEKGY 481 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 G DAA++A +A A+ ++VDV+++DTAGR+ +N LM + K+I++ + P VL Sbjct: 482 GKDAASIAMDAINFAREQRVDVVLVDTAGRMQDNEPLMRALSKLIKL------NDPDLVL 535 Query: 235 QVLDATTGQNALRQVEMFH-AVAGTT---------GLIMTKMDG-TARGGGLIPIVVTHK 283 V +A G A+ Q++ F+ A+A + G+++TK D + G I + T Sbjct: 536 FVGEALVGNEAVDQLKKFNQALADHSSQDRPRLIDGILLTKFDTIDDQVGAAISMTYTTG 595 Query: 284 IPVYFLGVGEGINDLEPFVAK 304 P+ F+G G+ DL+ K Sbjct: 596 QPIVFVGTGQTYKDLKSLNVK 616 >gi|256390708|ref|YP_003112272.1| signal recognition particle protein [Catenulispora acidiphila DSM 44928] gi|256356934|gb|ACU70431.1| signal recognition particle protein [Catenulispora acidiphila DSM 44928] Length = 515 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 145/291 (49%), Gaps = 19/291 (6%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSE 90 +S + +DD +R + L+ +D+ + + + + + +VS Q+++ V+E Sbjct: 22 LSPQDIDDTLRA-IRQALLEADVSLQAVRPFIAAVRERAEGAEVSKALNPAQQIIKIVNE 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + +L ++ + + P VI++ G+ G GKTT+ GKL++ + G +L A D Sbjct: 81 ELVAILGGETRRLRF-AKNPPTVIMLAGLQGAGKTTLAGKLARWLKSEGHTPILVAADLQ 139 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 R A+ QL++ +R E G+ + +A ++ A+ K DV+I+DTAGRL Sbjct: 140 RPNAVTQLQVVGERAGVPVFAPEPGNGVGNPVKVAKDSIDFAKTKLHDVVIVDTAGRLGI 199 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 ++ LM IR D +P VL V+DA GQ+A+ + F G G+++TK+D Sbjct: 200 DAELMKQAAD-IR-----DAVSPDEVLFVVDAMIGQDAVITAQAFMDGVGFDGVVLTKLD 253 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 G ARGG + + PV F GE + D + F + + I LD G+ Sbjct: 254 GDARGGAALSVRQVTGKPVMFASSGEKLEDFDVFHPERMAGRI---LDMGD 301 >gi|330723941|gb|AEC46311.1| signal recognition particle protein [Mycoplasma hyorhinis MCLD] Length = 445 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 86/309 (27%), Positives = 152/309 (49%), Gaps = 25/309 (8%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 L+K F + K+ T + L++ +RE ++ L+ +D+ + + + ++E+ K A Sbjct: 5 LSKRFQKSFAKMNAKTT--LKEEDLNEVIRE-IKLALLEADVNLLIVKDFIKEIKEKALA 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +++ Q+ + V+E + ++L KP ++ I++VG+ G GKTT + KL Sbjct: 62 TEITSTLNPQQQFIKIVNENLVQVLG--EKPKQIKYNRPIEKIVLVGLQGSGKTTTVAKL 119 Query: 132 S-----KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 + KK K +L D +R AAI+QL I + V S+ S + Sbjct: 120 AHFSLRKKHIQ---KPLLITADIYRPAAIEQL-IQLGKQINIPVFSQKDSTPQEIVSAGL 175 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A + D++IIDTAGRL + LM + + ++ K PH + V DA +GQ+ + Sbjct: 176 DYASSNDFDLVIIDTAGRLSIDEKLMQELKDIEKIAK------PHEIFFVADALSGQDII 229 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 + F+ +G I+TK+D ARGG + ++ KIP+ F+G GE I + + F Sbjct: 230 NVAKTFNENITLSGSIITKLDSDARGGAALSLIKLLKIPIVFIGTGEKITNFDLFYPDRM 289 Query: 307 SAVITGCLD 315 ++ I G D Sbjct: 290 ASRILGMGD 298 >gi|313678330|ref|YP_004056070.1| signal recognition particle protein [Mycoplasma bovis PG45] gi|312950595|gb|ADR25190.1| signal recognition particle protein [Mycoplasma bovis PG45] Length = 452 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 74/283 (26%), Positives = 135/283 (47%), Gaps = 23/283 (8%) Query: 44 GVREELEDLLIRSDIGVAVAQKIVEELLTKRY---------AKDVSVQRVLYDVSELIHK 94 GV +++ L+ +D+ + V + V + K A+ ++ V ++ +++ K Sbjct: 29 GVARDIKMALLEADVNLKVVKDFVANVKEKALSANLVGTLNAEQTMIKIVHNELVDILGK 88 Query: 95 MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRS 152 + P+ + + +P++I++ G+ G GKTT K++ K + K +L A D +R Sbjct: 89 EVRPI------EITKKPYIIMMTGLQGSGKTTACAKIAHFLKKKNQIEKPLLVAADIYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AA+ QL A D+ A + E+ A+ K D++IIDTAGRL + LM Sbjct: 143 AAVQQLVTLAKGIQVDYFEKGTNVSAQQIVKESLTFAKENKNDLIIIDTAGRLSIDEPLM 202 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + ++ + + P + V DA +GQ+ + F+ TG ++TK+D ARG Sbjct: 203 NELWELKNICE------PQEIFFVADALSGQDIINVANTFNNRLKLTGSVITKLDSDARG 256 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + + +P+ F+G GE I +L+ F + I G D Sbjct: 257 GAALSLSKVLSLPIRFIGTGEKIGNLDLFYPDRMADRILGMGD 299 >gi|291448077|ref|ZP_06587467.1| signal recognition particle protein [Streptomyces roseosporus NRRL 15998] gi|291351024|gb|EFE77928.1| signal recognition particle protein [Streptomyces roseosporus NRRL 15998] Length = 517 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 80/267 (29%), Positives = 132/267 (49%), Gaps = 15/267 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + + + + +VS Q+V+ V+E + +L Sbjct: 28 DATAREIRIALLEADVALPVVRAFIANVKERARGVEVSQALNPAQQVVKIVNEELVAILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + P VI++ G+ G GKTT+ GKL + G +L A D R A++Q Sbjct: 88 GETRRLRFAKTA-PTVIMLAGLQGAGKTTLAGKLGLWLKGQGHSPLLVACDLQRPNAVNQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R E G+ D +A ++ + A+AK D++I+DTAGRL + LM Sbjct: 147 LSVVAERAGVAVYAPEPGNGVGDPVQVAKDSIEFAKAKVHDIVIVDTAGRLGIDQELMQQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P +L V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301 + I V F GE + D + F Sbjct: 261 ALSIAHVTGKQVMFASNGEKLEDFDAF 287 >gi|47214780|emb|CAG00952.1| unnamed protein product [Tetraodon nigroviridis] Length = 648 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 112/220 (50%), Gaps = 30/220 (13%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA- 167 RP VI GVNGVGK+T + K+S + + G V++AA DTFR+ A++QL+ R ++ Sbjct: 426 RRPFVITFCGVNGVGKSTNLAKISFWLIENGFTVLIAACDTFRAGAVEQLRTHQRRLNSL 485 Query: 168 ------------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 G DAA +A EA A+ + DV+++DTAGR+ +N+ LM + Sbjct: 486 HPPERHGGRPMVQLYEKGYGKDAAGIAMEAIAYARNQAFDVVLVDTAGRMQDNAPLMTAL 545 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT---------GLIMTK 265 K+I V + P VL V +A G A+ Q+ F+ A+A + G+++TK Sbjct: 546 AKLIAV------NMPDLVLFVGEALVGNEAVDQLVKFNQALADHSMSDRPRLIDGIVLTK 599 Query: 266 MDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 D + G I + P+ F+G G+ NDL A+ Sbjct: 600 FDTIDDKVGAAISMTYITGQPIVFVGTGQTYNDLRNLNAR 639 >gi|239944613|ref|ZP_04696550.1| putative signal recognition particle protein [Streptomyces roseosporus NRRL 15998] gi|239991077|ref|ZP_04711741.1| putative signal recognition particle protein [Streptomyces roseosporus NRRL 11379] Length = 496 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 80/267 (29%), Positives = 132/267 (49%), Gaps = 15/267 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + + + + +VS Q+V+ V+E + +L Sbjct: 7 DATAREIRIALLEADVALPVVRAFIANVKERARGVEVSQALNPAQQVVKIVNEELVAILG 66 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + P VI++ G+ G GKTT+ GKL + G +L A D R A++Q Sbjct: 67 GETRRLRFAKTA-PTVIMLAGLQGAGKTTLAGKLGLWLKGQGHSPLLVACDLQRPNAVNQ 125 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R E G+ D +A ++ + A+AK D++I+DTAGRL + LM Sbjct: 126 LSVVAERAGVAVYAPEPGNGVGDPVQVAKDSIEFAKAKVHDIVIVDTAGRLGIDQELMQQ 185 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P +L V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 186 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 239 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301 + I V F GE + D + F Sbjct: 240 ALSIAHVTGKQVMFASNGEKLEDFDAF 266 >gi|321309532|ref|YP_004191861.1| signal recognition particle protein Ffh [Mycoplasma haemofelis str. Langford 1] gi|319801376|emb|CBY92022.1| signal recognition particle protein Ffh [Mycoplasma haemofelis str. Langford 1] Length = 445 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 77/268 (28%), Positives = 134/268 (50%), Gaps = 18/268 (6%) Query: 53 LIRSDIGVAVAQKIVEE----LLTKRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWD 106 L+ SD+ + V + ++E LL K KD + V++ I + L+ + +K + Sbjct: 39 LLNSDVNLKVVKSFLDEVKSDLLGKPIDKDQELDVVVFST---IKRHLINILGTKHVPLN 95 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADR 164 S + + ILV+G+NG GKTT + K+SK +S KV + D +R A DQL+ ++ Sbjct: 96 LSSKLNKILVIGLNGSGKTTTVAKISKHLSSLKGSSKVRNISLDIYRPGAFDQLQHLSNS 155 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + +E + ++ E+ +A +D L+ D+ G L +N LM + + +++ Sbjct: 156 FGVESYFAE-NKNFSSFIKESIFEADKDGIDFLVFDSYGLLSDNEDLMKELSSIRKLIN- 213 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P VL VLDA GQ L + F+ G TGL+++K D + G K+ Sbjct: 214 -----PSEVLFVLDAMAGQEILDVLTKFNEEFGITGLVISKADSLSPMGAAFSASYLFKL 268 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITG 312 P+ FLG GE +++L F + +++I G Sbjct: 269 PIKFLGDGETVDNLSTFHPERIASLILG 296 >gi|89898160|ref|YP_515270.1| signal recognition particle GTPase [Chlamydophila felis Fe/C-56] gi|89331532|dbj|BAE81125.1| signal recognition particle GTPase [Chlamydophila felis Fe/C-56] Length = 448 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 81/284 (28%), Positives = 141/284 (49%), Gaps = 17/284 (5%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQ----KIVEELLTKRYAKDVSV-QRVLYDVSE 90 I+ + + +RE + L+ +D+ V + K+ +++L + K VS Q+ + + E Sbjct: 22 ITEENISEAIRE-VRLALLDADVNYHVVKSFIAKVKQKILGEEVWKHVSPGQQFIRHLHE 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA--GLKVMLAAGD 148 + ++L +S + S P V+L+ G+ G GKTT KL+ + + KV++ D Sbjct: 81 ELTELL--ISSEADLTTSGNPGVVLLCGLQGTGKTTTCAKLAAYVLEKRKAKKVLVVPCD 138 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 R AA+DQL+ +T A+ SE D + +A A+ D+++IDTAGRLH + Sbjct: 139 LKRYAAVDQLRNLISKTKAELYNSE-AQDPVKVVSQALDYAKQNGHDLVLIDTAGRLHVD 197 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 +M + + + K + L V++ GQ+A+ + F TG+I++ DG Sbjct: 198 EAMMEELASIQKASKSCER------LFVMNLAMGQDAVTTAKAFDDCLDLTGVIISMTDG 251 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 AR G ++ + P+ F G GE I DL PF A+ + I G Sbjct: 252 DARAGAVLSMKSLLGKPIKFEGCGEKIQDLRPFNAESMADRILG 295 >gi|269468029|gb|EEZ79750.1| signal recognition particle GTPase [uncultured SUP05 cluster bacterium] Length = 196 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 58/142 (40%), Positives = 86/142 (60%), Gaps = 3/142 (2%) Query: 54 IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPH 112 I +DIG+ K++E + K + LY + + + K+L+ N + + Sbjct: 57 ITADIGINTTDKVLESVRKNASRKILKNSDSLYQFLKDELRKLLID-DNQLNINV-NSTF 114 Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 VILVVGVNG GKTT IGKL+K + G VMLAAGDTFR+AA++QLK+W +R V Sbjct: 115 VILVVGVNGAGKTTTIGKLAKSFQNQGKSVMLAAGDTFRAAAVEQLKVWGERNEIPVVAQ 174 Query: 173 EIGSDAAALAYEAFKQAQAKKV 194 G+DAA++ Y+A++ A+AK + Sbjct: 175 ATGADAASVIYDAYESAKAKNI 196 >gi|300709660|ref|YP_003735474.1| signal recognition 54 kDa protein [Halalkalicoccus jeotgali B3] gi|299123343|gb|ADJ13682.1| signal recognition 54 kDa protein [Halalkalicoccus jeotgali B3] Length = 462 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 78/272 (28%), Positives = 128/272 (47%), Gaps = 16/272 (5%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWD 106 E++ L+++D+ V++ ++ + + T+ ++ D V ++++ L+ L + + Sbjct: 34 EIQRSLLQADVDVSLVMELSDSIKTRALEEEPPGGTTARDHVLRIVYEELVALVGD-STE 92 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 I++ G+ G GKTT K++ S GL+ + DTFR A DQ K +R Sbjct: 93 LPLEEQTIMLAGLQGSGKTTTAAKMAWWFSKKGLRPAVIQTDTFRPGAYDQAKQMCERAE 152 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR--LHNNSIL-MAGIGKMIRVLK 223 +F D +A ++ DV I+DTAGR L + I + IG+ + Sbjct: 153 VEFYGDPDAEDPVEIARRGMEET--ADADVHIVDTAGRHALEDELIKEIEAIGEAVE--- 207 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 P L VLDA GQ A Q F G G+ +TK+DGTA+GGG + V Sbjct: 208 ------PDRSLLVLDAAIGQGAKEQARRFEESIGIQGVAITKLDGTAKGGGALTAVNETD 261 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + FLG GE ++D+E F F + + G D Sbjct: 262 STIAFLGTGEEVDDIERFEPNGFISRLLGMGD 293 >gi|258653309|ref|YP_003202465.1| signal recognition particle protein [Nakamurella multipartita DSM 44233] gi|258556534|gb|ACV79476.1| signal recognition particle protein [Nakamurella multipartita DSM 44233] Length = 515 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 84/307 (27%), Positives = 144/307 (46%), Gaps = 19/307 (6%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L T++ RL D E+ L+ +D+ + V + + + + Sbjct: 2 FETLSDRLSGVFTNLRGKGRLTPADVDRTCREIRVALLEADVALPVVRAFIARIKERANG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 VS Q+++ V+E + +L ++ + + P VI++ G+ G GKTT+ GKL Sbjct: 62 VIVSAALNPAQQIIKIVNEELVAILGGETRRLTY-AKNPPTVIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188 + + G +L A D R A+ QL+I ++ E G+ D A+A Sbjct: 121 ALWLKGQGHTPLLVASDLQRPNAVTQLQIVGEQAGVQVFAPEPGNGVGDPVAVARAGVAH 180 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ + D++I+DTAGRL ++ +M + + D P +L VLDA GQ+A+ Sbjct: 181 AKVRLHDIVIVDTAGRLGVDADMMQ------QAVDIRDAVQPQEILFVLDAMVGQDAVTT 234 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 E F G G+++TK+DG ARGG + + P+ F GE + D + F ++ Sbjct: 235 AEAFRDGVGFNGVVLTKLDGDARGGAALSVRHVTGQPIMFASTGEKLADFDVFHPDRMAS 294 Query: 309 VITGCLD 315 I G D Sbjct: 295 RILGMGD 301 >gi|288800175|ref|ZP_06405634.1| signal recognition particle protein [Prevotella sp. oral taxon 299 str. F0039] gi|288333423|gb|EFC71902.1| signal recognition particle protein [Prevotella sp. oral taxon 299 str. F0039] Length = 446 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 110/207 (53%), Gaps = 9/207 (4%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +IL+ G+ G GKTT GKL+ + + K +L A D +R AAI+QL + ++ Sbjct: 99 PSIILMSGLQGSGKTTFTGKLANLLKTKQNKKPLLVACDVYRPAAIEQLMVVGEQIGVP- 157 Query: 170 VCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V SEI + +A ++A+AK DV++IDTAGRL + +M I K+ ++ Sbjct: 158 VYSEIENKNVVEIAQHGIQEAKAKGYDVVLIDTAGRLAIDEEMMNEISKLKESVQ----- 212 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + I P+ F Sbjct: 213 -PTETLFVVDSMTGQDAVNTAKEFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVTKPIKF 271 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +G GE + ++ F + I G D Sbjct: 272 VGTGEKMEAIDLFHPSRMADRILGMGD 298 >gi|308808356|ref|XP_003081488.1| signal recognition particle 54kDa subunit (ISS) [Ostreococcus tauri] gi|116059951|emb|CAL56010.1| signal recognition particle 54kDa subunit (ISS) [Ostreococcus tauri] Length = 559 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 22/220 (10%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 +V++ VG+ G GKTT K + + G K L DTFR+ A D F Sbjct: 145 NVVMFVGLQGAGKTTTCTKFAHYYARKGFKAALVCADTFRAGAFDXXXXXXXVRPGPFGP 204 Query: 172 SEIGSD----------------AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 E D A +A + + +K+D++I+DT+GR L + Sbjct: 205 VEPKRDQRPKIPVLRLVHPRAMPAKIARGWVARFEEEKMDLIIVDTSGRHRQEEALFEEM 264 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 ++ V P + V+D++ GQ+A Q F + G+IMTK+DG A+GGG Sbjct: 265 REIANVTD------PTMTIFVMDSSIGQSAADQANAFASTVDVGGVIMTKLDGHAKGGGA 318 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I V K P+ F+G GE I ++EPF A F + + G D Sbjct: 319 ISAVSETKAPILFIGTGEHIGEMEPFDANSFVSKLLGMGD 358 >gi|307214651|gb|EFN89594.1| Signal recognition particle receptor subunit alpha-like protein [Harpegnathos saltator] Length = 621 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 84/295 (28%), Positives = 143/295 (48%), Gaps = 41/295 (13%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP- 98 V ++L+D LI ++ +AQK+ + + TK K D V +++ + ++L P Sbjct: 325 VLDKLKDHLITKNVAADIAQKLCDSVGTKLEGKVLGTFDNVANTVKATLTDALVQILSPK 384 Query: 99 -----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 L + RP+V+ GVNGVGK+T + K+ + + +V++AA DTFR+ Sbjct: 385 RRIDILRDALEAKKTGRPYVMTFCGVNGVGKSTNLAKICFWLIENNFRVLIAACDTFRAG 444 Query: 154 AIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 A++QL+ +A G DAA +A EA + A+ D++++D Sbjct: 445 AVEQLRTHMRHLNALHPQEKHGNVPMVQLYEKGYGKDAAGIAMEAIRFAKDCLFDIVLVD 504 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT 259 TAGR+ +N LM + K+I+V + P VL V +A G A+ Q+ F+ A+A + Sbjct: 505 TAGRMQDNEPLMRALAKLIKV------NEPDLVLFVGEALVGNEAVDQLVKFNQALADYS 558 Query: 260 ---------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 G+++TK D + G I + P+ F+G G+ DL+ AK Sbjct: 559 QSVNPHIIDGIVLTKFDTIDDKVGAAITMTYITGQPIVFVGTGQTYTDLKSLNAK 613 >gi|242055585|ref|XP_002456938.1| hypothetical protein SORBIDRAFT_03g045950 [Sorghum bicolor] gi|241928913|gb|EES02058.1| hypothetical protein SORBIDRAFT_03g045950 [Sorghum bicolor] Length = 487 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 71/203 (34%), Positives = 103/203 (50%), Gaps = 15/203 (7%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 V++ VG+ G GKTT K + G L DTFR+ A+DQL+ A + F S Sbjct: 114 VVMFVGLQGSGKTTTCVKYADYHRRTGFSPALVCADTFRAGALDQLRQNAAKAGIPFYGS 173 Query: 173 EIGSDAAALAYE-------AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 SD +A E A + A A+ D++++DT+GR + L+ + ++ + Sbjct: 174 YTESDPVRVAVEGVDRFRNADQAAAAEGCDLIVVDTSGRHSQEAALLEEMRQLAEATR-- 231 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMF-HAVAGTTGLIMTKMDGTAR-GGGLIPIVVTHK 283 P V+ V+DAT GQ A Q F +V +++TKMDG A+ GGG + V K Sbjct: 232 ----PDLVVLVMDATIGQAAFDQALAFKQSVEVGAVIVVTKMDGHAKGGGGALSAVAATK 287 Query: 284 IPVYFLGVGEGINDLEPFVAKDF 306 PV F+G GE I DLE F A+ F Sbjct: 288 SPVIFIGTGEHIADLEAFDARSF 310 >gi|94270962|ref|ZP_01291863.1| GTP-binding signal recognition particle SRP54, G-domain:Signal peptide binding (SRP54) M-domain [delta proteobacterium MLMS-1] gi|93450606|gb|EAT01727.1| GTP-binding signal recognition particle SRP54, G-domain:Signal peptide binding (SRP54) M-domain [delta proteobacterium MLMS-1] Length = 313 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 58/158 (36%), Positives = 84/158 (53%), Gaps = 6/158 (3%) Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 IDQL + A+ S D + +A +A D L+IDTAGRLH + LM Sbjct: 1 IDQLTVLAESLQVPVYPSRSDQDPVTICRQALHRADEAGCDTLLIDTAGRLHVDETLMDE 60 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 +G++ L+ P +L V DA TGQ+A+ E FH +G+I+TK+DG ARGG Sbjct: 61 LGRLKEALQ------PAEILLVADAMTGQDAVTVAEKFHQDLDLSGVILTKLDGDARGGA 114 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 + I P+ F+G+GEG++ LEPF ++ I G Sbjct: 115 ALSIRRATGRPLKFVGLGEGLDALEPFHPDRMASRILG 152 >gi|83313161|ref|YP_423425.1| Signal recognition particle GTPase [Magnetospirillum magneticum AMB-1] gi|82948002|dbj|BAE52866.1| Signal recognition particle GTPase [Magnetospirillum magneticum AMB-1] Length = 454 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 86/263 (32%), Positives = 134/263 (50%), Gaps = 16/263 (6%) Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKMLMPL--SKPFNWDFSHRPHV 113 VA +V+E + + A+ V + V+ VS +++H L+ +K + S P V Sbjct: 43 VALSVVKEFIGRVKARAVGAE-VIKSVSPGQMVVKIVHDELIATLGTKGTELNLSAVPPV 101 Query: 114 -ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 IL+VG+ G GKTT K++ K+ KV+LA+ D +R AA QL+I A + + Sbjct: 102 VILMVGLQGSGKTTTSAKIALKLKKEKKKVLLASLDVYRPAAQQQLQILAGQAEVGSLPI 161 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 +G A++ A + + DV+I+DTAGRLH + LMA + + D P Sbjct: 162 VMGEMPVAISKRALDVGRKEGYDVVILDTAGRLHIDQELMAEVAAV------RDAAKPTE 215 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 L V DA GQ+A+ F+ G TG+++T++DG ARGG + + P+ FLG G Sbjct: 216 TLLVTDAMVGQDAVTLAREFNEKVGVTGIVLTRIDGDARGGAALSMRAITGRPIKFLGAG 275 Query: 293 EGINDLEPFVAKDFSAVITGCLD 315 E ++ LE F + I G D Sbjct: 276 EKLDALEVFHPDRIAGRILGMGD 298 >gi|256372274|ref|YP_003110098.1| signal recognition particle protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008858|gb|ACU54425.1| signal recognition particle protein [Acidimicrobium ferrooxidans DSM 10331] Length = 443 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 77/216 (35%), Positives = 111/216 (51%), Gaps = 9/216 (4%) Query: 101 KPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 +PF + S P VIL+ G+ GVGKTT KL+ G +L A D R AI+QL+ Sbjct: 89 EPFRLRYASTPPTVILLAGLQGVGKTTAAAKLALAQLREGRSPLLVAADLQRPGAIEQLR 148 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 I +R V G D +A +A+ DV+I+DTAGRL + LM + +M Sbjct: 149 ILGERAGVAVVSD--GDDPVTVARHGVAEARRLGRDVVIVDTAGRLAIDEALMREV-QM- 204 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 V + +DPH + L V+DA GQ ++R + F + +I+TK+DG ARGG + + Sbjct: 205 -VSEAIDPH--YRFL-VVDAMVGQESVRVAQAFDERLSISAVILTKLDGDARGGAALSVR 260 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F VGE + D EPF ++ I G D Sbjct: 261 EVVGKPIAFASVGEKLEDFEPFYPDRMASRILGMGD 296 >gi|195174297|ref|XP_002027915.1| GL27063 [Drosophila persimilis] gi|194115604|gb|EDW37647.1| GL27063 [Drosophila persimilis] Length = 610 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 83/284 (29%), Positives = 135/284 (47%), Gaps = 41/284 (14%) Query: 51 DLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP------- 102 D LI ++ +A K+ + + T K V + V V E + + L+ + P Sbjct: 320 DHLISKNVASEIAVKLCDSVATSLEGKQVGTFDSVASLVKEALTQSLVRILSPKRRIDII 379 Query: 103 ---FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 S +P+ I+ GVNGVGK+T + K+ + + V++AA DTFR+ A++QL+ Sbjct: 380 RDALESKRSGKPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAVEQLR 439 Query: 160 IWA-------------DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 +RT G DAA +A EA K A KVDV+++DTAGR+ Sbjct: 440 THTRHLNALHPPANHNNRTMVQLYEKGYGKDAAGIAMEAIKFAHETKVDVVLVDTAGRMQ 499 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT------ 259 +N LM + K+I+V + P VL V +A G A+ Q+ F+ ++A + Sbjct: 500 DNEPLMRSLSKLIKV------NNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSNENPH 553 Query: 260 ---GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 G+++TK D + G I + P+ F+G G+ DL+ Sbjct: 554 IIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLK 597 >gi|170094140|ref|XP_001878291.1| predicted protein [Laccaria bicolor S238N-H82] gi|164646745|gb|EDR10990.1| predicted protein [Laccaria bicolor S238N-H82] Length = 664 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 84/297 (28%), Positives = 140/297 (47%), Gaps = 49/297 (16%) Query: 45 VREELEDLLIRSDIGVAVAQKIVE---ELLTKR-------------YAKDVSVQRVLYD- 87 V E ++ L++ ++ + +A K+ E E L R A S+ R+L Sbjct: 359 VLEGMKQHLMKKNVAMEIADKVCENVGENLVGRKVGGFQTTSAAVHLALSTSLTRILTPK 418 Query: 88 -VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 ++L+ + LS P P+ I VGVNGVGK+T + K+ + GL+V++AA Sbjct: 419 TSTDLLLSIRNKLSSPLPSTQRRVPYSITFVGVNGVGKSTNLSKVCFWLIQNGLRVLIAA 478 Query: 147 GDTFRSAAIDQLKIWA-------------DRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 DTFRS A++QL++ ++ + G DAA +A EA AQ Sbjct: 479 CDTFRSGAVEQLRVHVRNLSMLGVDGATNSKSRVELFERGYGKDAAGIAREAIGYAQEND 538 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL------- 246 DV++IDTAGR+ +N LM + K++ V + P ++ V +A G A+ Sbjct: 539 FDVVLIDTAGRMQDNEPLMRALAKLVAV------NNPDKIIFVGEALVGNEAVDQLTKFD 592 Query: 247 RQVEMFHAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 R + F +V+G + G+++TK D + G + + P+ F+G G+ DL Sbjct: 593 RALRDFSSVSGRSRGIDGMLVTKWDTVDDKVGAALSMTYVTGQPIIFVGCGQTYTDL 649 >gi|319899458|ref|YP_004159555.1| signal recognition particle protein [Bartonella clarridgeiae 73] gi|319403426|emb|CBI76994.1| signal recognition particle protein [Bartonella clarridgeiae 73] Length = 519 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 131/260 (50%), Gaps = 21/260 (8%) Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM-----LMPLSKPFNWDFSHRPHVILV 116 V +K V + K V ++++D EL+H + L L+ P P VI++ Sbjct: 55 VREKAVGAAIVKSIKPGQMVVKIVHD--ELVHMLGSESVLSDLNAPA-------PVVIML 105 Query: 117 VGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VG+ G GKTT KL+K+++D KV++A+ DT R AA +QL+ + D + Sbjct: 106 VGLQGSGKTTTTAKLAKRLTDKHNKKVLMASLDTRRPAAQEQLRQLGKQVQIDSLPIIPD 165 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 A ++ A + A+ DV+++DTAGR H + LM + +++ P+ ++ Sbjct: 166 QSAVDISTRALQAARLGGYDVVLLDTAGRNHIDEALM------LELIEIKASSQPYEIML 219 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V D+ TGQ+A+ F+ G TG+I+T+M+ RGG + + P+ +G GE + Sbjct: 220 VADSLTGQDAVNLARSFNERIGITGIILTRMESDGRGGAALSMRAVTGKPIKAIGTGEKM 279 Query: 296 NDLEPFVAKDFSAVITGCLD 315 + LE F + + I G D Sbjct: 280 DALEEFHPRRIADRILGMGD 299 >gi|290979105|ref|XP_002672275.1| predicted protein [Naegleria gruberi] gi|284085850|gb|EFC39531.1| predicted protein [Naegleria gruberi] Length = 484 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 74/277 (26%), Positives = 137/277 (49%), Gaps = 17/277 (6%) Query: 47 EELEDLLIRSDIG----VAVAQKIVEEL--LTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100 +E+ L+ +D+ V V I EEL +++ + +++R+L + + K+ P Sbjct: 33 KEISKALLEADVNCEQVVQVYNGIKEELDNMSQDVNRKKNIKRIL---KKELCKLFDPGV 89 Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 K + +VIL +G+ G GKTT K + G K + +TFR+ A D L+ Sbjct: 90 KAIK-PVKGKQNVILFIGLRGAGKTTTASKFAMFYKKKGFKCAIVNSNTFRTGAFDSLRH 148 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 + R + F + +D +A + + + + D++I+DT+ R L + K+I Sbjct: 149 NSLRDTIPFYGNVFETDPIKIAKDGVETFKKENYDLIIVDTSARTIQEESLFEEM-KLIS 207 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG-LIMTKMDGTARGGGLIPIV 279 + P+ ++ V+D+ GQ+ QV F + T G +I+TK+DG ++GGG + + Sbjct: 208 -----EAITPNDIILVMDSKIGQSIKEQVTTFKSRIPTLGSIILTKLDGHSKGGGALSAI 262 Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316 K P+ F+G GE + L+PF + F + + G +Y Sbjct: 263 AATKTPISFIGTGEYYDSLQPFEVEGFVSRLLGEGNY 299 >gi|302874777|ref|YP_003843410.1| signal recognition particle protein [Clostridium cellulovorans 743B] gi|307690607|ref|ZP_07633053.1| signal recognition particle protein [Clostridium cellulovorans 743B] gi|302577634|gb|ADL51646.1| signal recognition particle protein [Clostridium cellulovorans 743B] Length = 452 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +I++VG+ G GKTT+ GKL+ + K +L A D +R AAI QL++ + Sbjct: 103 IIMLVGLQGAGKTTMAGKLALNLRKKNKKPLLVACDVYRPAAIKQLEVLGKQIDIPVFSM 162 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH-APH 231 ++ K A+ +V+IIDTAGRL + LM LK + P Sbjct: 163 GDKISPVEISKAGIKHAKDNGNNVVIIDTAGRLQIDEELM-------EELKNIKADVTPD 215 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 +L V+D+ TGQ A+ + F G+++TK+DG +GG + I P+ F+G+ Sbjct: 216 EILLVVDSMTGQEAVNVAKTFDETLDIDGVVLTKLDGDTKGGAALSIKALTGKPIKFVGL 275 Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315 GE +NDLE F ++ I G D Sbjct: 276 GEKVNDLEVFHPDRMASRILGMGD 299 >gi|326776310|ref|ZP_08235575.1| signal recognition particle protein [Streptomyces cf. griseus XylebKG-1] gi|326656643|gb|EGE41489.1| signal recognition particle protein [Streptomyces cf. griseus XylebKG-1] Length = 516 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 79/267 (29%), Positives = 132/267 (49%), Gaps = 15/267 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + + + + +VS Q+V+ V+E + +L Sbjct: 28 DATAREIRIALLEADVALPVVRAFIANVKERARGVEVSQALNPAQQVVKIVNEELVAILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + P VI++ G+ G GKTT+ GKL + G +L A D R A++Q Sbjct: 88 GETRRLRFAKTA-PTVIMLAGLQGAGKTTLAGKLGLWLKGQGHSPLLVACDLQRPNAVNQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R E G+ D +A ++ + A+AK D++I+DTAGRL + LM Sbjct: 147 LSVVAERAGVAVYAPEPGNGVGDPVQVAKDSIEFAKAKVHDIVIVDTAGRLGIDQELMRQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P +L V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301 + I + F GE + D + F Sbjct: 261 ALSIAHVTGKQIMFASNGEKLEDFDAF 287 >gi|302419337|ref|XP_003007499.1| signal recognition particle receptor subunit alpha [Verticillium albo-atrum VaMs.102] gi|261353150|gb|EEY15578.1| signal recognition particle receptor subunit alpha [Verticillium albo-atrum VaMs.102] Length = 636 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 93/284 (32%), Positives = 140/284 (49%), Gaps = 37/284 (13%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSEL-IHKMLM 97 RL +GV +EL +GV E + T+ + A + S+ ++L S L + + + Sbjct: 361 RLCEGVEKEL--------LGVKTGN--FESINTRIQSAMEASLTKMLTPTSSLDLLREID 410 Query: 98 PLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 +++P S RP+V+ +VGVNGVGK+T + K+ + +V++AAGDTFRS A++ Sbjct: 411 AITRPSAVSLRSARPYVMSIVGVNGVGKSTNLSKICFFLLQNKYRVLIAAGDTFRSGAVE 470 Query: 157 QLKIWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 QL + R + E G DAA +A +A A A+ DV++IDTAGR H Sbjct: 471 QLAVHV-RNLTELTAREGGKVELYQKGYGKDAAQVARDAVAHAAAEGFDVVLIDTAGRRH 529 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQV----LDATTGQNALRQVEMFHAVAGTTGLI 262 N+ LM+ + K K P +L V L T F A G G I Sbjct: 530 NDQRLMSSLEKFANFAK------PDKILMVGEPSLAPTRSPRPATSTPPFGAARGLDGFI 583 Query: 263 MTKMD--GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 ++K D GT G L+ +V +PV F+GVG+ +DL F K Sbjct: 584 ISKCDTVGTMV-GTLVSLVHATNVPVLFVGVGQHYSDLRNFSVK 626 >gi|182435685|ref|YP_001823404.1| putative signal recognition particle protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464201|dbj|BAG18721.1| putative signal recognition particle protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 516 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 79/267 (29%), Positives = 132/267 (49%), Gaps = 15/267 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + + + + +VS Q+V+ V+E + +L Sbjct: 28 DATAREIRIALLEADVALPVVRAFIANVKERARGVEVSQALNPAQQVVKIVNEELVAILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + P VI++ G+ G GKTT+ GKL + G +L A D R A++Q Sbjct: 88 GETRRLRFAKTA-PTVIMLAGLQGAGKTTLAGKLGLWLKGQGHSPLLVACDLQRPNAVNQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R E G+ D +A ++ + A+AK D++I+DTAGRL + LM Sbjct: 147 LSVVAERAGVAVYAPEPGNGVGDPVQVAKDSIEFAKAKVHDIVIVDTAGRLGIDQELMRQ 206 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 IR D +P +L V+DA GQ+A+ E F G G++++K+DG ARGG Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301 + I + F GE + D + F Sbjct: 261 ALSIAHVTGKQIMFASNGEKLEDFDAF 287 >gi|242038763|ref|XP_002466776.1| hypothetical protein SORBIDRAFT_01g014030 [Sorghum bicolor] gi|241920630|gb|EER93774.1| hypothetical protein SORBIDRAFT_01g014030 [Sorghum bicolor] Length = 476 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 89/283 (31%), Positives = 139/283 (49%), Gaps = 21/283 (7%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT----KRYAKDVSVQRVLYD--V 88 ++ + LDD + E+ L+++D+ +++ + + + A + +RV++ V Sbjct: 22 LVDQKVLDDCL-NEISRALLQADVRFETVRRVQATIKSTVNLQALADGTNKRRVIHRAVV 80 Query: 89 SELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAA 146 +EL + L P F +P V++ VG+ G GKTT K + GL L Sbjct: 81 AEL-RRTLDPGKPSFAPTKGRKPASVVMFVGLQGSGKTTTCVKYADYHRRHKGLSPALVC 139 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA---FKQAQAKKVDVLIIDTAG 203 DTFR+ A DQLK A + F S SD +A E F+ A D++++DT+G Sbjct: 140 ADTFRAGAFDQLKQNATKAGIPFYGSHTESDPVKVAVEGVDRFRDEDA--CDLIVVDTSG 197 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 R + L+ + ++ D P V+ V+DA+ GQ A +Q + F +I+ Sbjct: 198 RHRQEAALLEEMRQVA------DATRPDLVVFVMDASIGQAAFQQAQAFRQSTPVGAVIV 251 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TKMDG A+GGG + V K PV F+G GE I DLE F AK F Sbjct: 252 TKMDGHAKGGGALSAVAATKSPVIFIGTGEHIPDLEAFDAKSF 294 >gi|221132103|ref|XP_002161830.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 644 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 91/291 (31%), Positives = 146/291 (50%), Gaps = 48/291 (16%) Query: 33 TDIISSRRLDDGVREELEDLLIRSDIGVAVA-QKIVEELLTKRYAKDVSVQRVLYDVSEL 91 TDI S +L + V +LE ++ + GVA A + +EE L + + + +L DV E Sbjct: 364 TDI--SEKLCNSVAAKLEGKVLGTFTGVATAVRSSMEESLVQILSPKKRID-ILRDVMES 420 Query: 92 IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 K L P+VI+ GVNGVGK+T + K+ + + +VM+AA DTFR Sbjct: 421 KKKGL--------------PYVIVFCGVNGVGKSTNLAKICFWLLENNHRVMIAACDTFR 466 Query: 152 SAAIDQLKIWADRTSA------------DFVCSE-IGSDAAALAYEAFKQAQAKKVDVLI 198 S A++QL+ R A F+ + G DAAA++ EA A+ K DV++ Sbjct: 467 SGAVEQLRTHTCRLKALHPKASPSAPEQVFLYDKGYGKDAAAVSMEAINLAKDLKCDVVL 526 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAG 257 +DTAGR+ +N LM + K+I++ + P+ VL V +A G + + Q+ F+ A+A Sbjct: 527 VDTAGRMQDNEPLMRSLAKLIKI------NEPNLVLFVGEALVGNDGVDQLRKFNQALAD 580 Query: 258 TT---------GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 + G+++TK D + G I + P+ F+G G+ DL Sbjct: 581 HSDVNNPHLIDGIVLTKFDTIDDKVGASISMTYETGQPIVFVGTGQTYTDL 631 >gi|294659968|ref|XP_462420.2| DEHA2G20196p [Debaryomyces hansenii CBS767] gi|199434369|emb|CAG90930.2| DEHA2G20196p [Debaryomyces hansenii] Length = 545 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 84/287 (29%), Positives = 140/287 (48%), Gaps = 31/287 (10%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP-LS 100 D V ++ D LI +I A+ I++++ K K V++ + E + K+L P +S Sbjct: 257 DEVSKKFLDQLITKNIAPPTAKIILDKIKNKLGNKQGVTIAMYKQTMVEELTKILTPNVS 316 Query: 101 KPFNWDFSHR-----PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 ++ R P+VI VVGVNGVGK+T + KL+ L V++ A DTFRS A+ Sbjct: 317 TDLLYEIKDRSSSGKPYVISVVGVNGVGKSTNLAKLAYWFLQNNLNVLICACDTFRSGAV 376 Query: 156 DQLKIWADR----TSADFVCSEI---------GSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +QLK+ + ++ S+I G A A A + A + D+++IDTA Sbjct: 377 EQLKVHVNNLQKLNNSSSSESKIDIFEKGYGGGDHVVATAKSAIQHASTEHYDIVLIDTA 436 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG-- 260 GR H+N+ LM + K D P ++ V +A G +++ Q F+ G Sbjct: 437 GRTHSNAKLMTPLKKF------GDAANPDKIIMVGEALVGTDSVEQAINFNNAFGNRRNL 490 Query: 261 --LIMTKMDGTAR-GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 I++K+D G +I +V+ K+P+ F+G G+ D++ K Sbjct: 491 DFFIISKIDTVGDLVGTMINMVMATKVPILFVGTGQTYTDIKRLSVK 537 >gi|303233299|ref|ZP_07319970.1| signal recognition particle protein [Atopobium vaginae PB189-T1-4] gi|302480599|gb|EFL43688.1| signal recognition particle protein [Atopobium vaginae PB189-T1-4] Length = 484 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 87/304 (28%), Positives = 143/304 (47%), Gaps = 16/304 (5%) Query: 21 FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F+S S +L++ + + L + E+ L+ +D+ V ++ V K Sbjct: 2 FSSLSDRLQQTFSQLRGKATLTEQDIAAAMREIRMALLEADVNYRVVKEFVATCKEKCST 61 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V Q V+ V + + ++L S P+VI++VG+ G GKTT KL Sbjct: 62 AEVLSSLTPAQNVVKVVLDELTRLLGSTSSGLVLSSGRTPNVIMLVGLQGSGKTTATAKL 121 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + G ++AA DT R AA DQL+ A F ++ + A +A A + A Sbjct: 122 AYLLKQQGRAPLVAACDTHRPAAADQLQTLAREIGVGFYRAD-NTPAQDVAAGAIQDAVD 180 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K D++IIDTAGR + +M + + +K P +L V+DA GQ+ + V+ Sbjct: 181 KLKDIVIIDTAGRTQLDEEMMLEAIAIKQAVK------PDQILMVVDAMAGQDIVNVVKE 234 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F A G+I++K+DG ARGGG + + P+ F+ +GE + LE F + I Sbjct: 235 FSARLDFDGVIISKLDGDARGGGALSVREVTGKPIKFVSMGEKPSSLEVFHPDRMAKRIL 294 Query: 312 GCLD 315 G D Sbjct: 295 GMGD 298 >gi|289622052|emb|CBI51230.1| unnamed protein product [Sordaria macrospora] Length = 676 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 97/300 (32%), Positives = 152/300 (50%), Gaps = 41/300 (13%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVS--ELIHKML 96 RL +GV +EL IGV E + T+ + A +VS+ ++L S +L+ ++ Sbjct: 382 RLCEGVEKEL--------IGVKTGS--FESINTRIQKAMEVSLTKMLTPTSSLDLLREID 431 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 S P RP+V+ +VGVNGVGK+T + K+ + KV++AAGDTFRS A++ Sbjct: 432 SITSPPATSLRKARPYVMSIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVE 491 Query: 157 QLKIWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 QL + R + E G DAAA+A +A A + DV++IDTAGR H Sbjct: 492 QLAVHV-RNLKELTQREGGKVELYQKGYGKDAAAVAKDAVTFAAQEGFDVVLIDTAGRRH 550 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLI 262 N+ LM+ + K + + P +L V +A G +++ Q + F+A G G I Sbjct: 551 NDQRLMSSLEKFAKFAQ------PDKILMVGEALVGTDSVAQAKNFNASFGAGRSLDGFI 604 Query: 263 MTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEKI 321 ++K D G ++ IV +PV F+GVG+ +DL F +V G + E++I Sbjct: 605 ISKCDTVGDMVGTIVSIVHATNVPVLFVGVGQHYSDLRNF------SVPVGSREAAEQRI 658 >gi|254821185|ref|ZP_05226186.1| hypothetical protein MintA_14707 [Mycobacterium intracellulare ATCC 13950] Length = 139 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 60/138 (43%), Positives = 83/138 (60%), Gaps = 2/138 (1%) Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 G+D A++A++A + A VDV++IDTAGRLH LM + K+ RV+ R A VL Sbjct: 4 GADPASVAFDAVDKGIAAGVDVVLIDTAGRLHTKVGLMDELDKVKRVVTRR--AAVDEVL 61 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VLDAT GQN L Q +F V TG ++TK+DGTA+GG + + +PV +G+GEG Sbjct: 62 LVLDATIGQNGLAQARVFAEVVEITGAVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEG 121 Query: 295 INDLEPFVAKDFSAVITG 312 +DL PF F + G Sbjct: 122 PDDLAPFEPAAFVDALLG 139 >gi|196016166|ref|XP_002117937.1| hypothetical protein TRIADDRAFT_33282 [Trichoplax adhaerens] gi|190579510|gb|EDV19604.1| hypothetical protein TRIADDRAFT_33282 [Trichoplax adhaerens] Length = 614 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 90/323 (27%), Positives = 154/323 (47%), Gaps = 54/323 (16%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LS+ + LT + KEG+ I+ E++++ LI ++ +A ++ + Sbjct: 298 LSFFKTLT----GQKIITKEGMVPIL----------EKMKEHLIAKNVAADIADQLCSSV 343 Query: 71 LTKRYAKDVSV-----QRVLYDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGV 119 TK K + V ++E + ++L P L +P+ I GV Sbjct: 344 STKLEGKVIGTFGGITSEVKKTLAESLTQLLSPRRQIDILRDCMEAKRRQKPYSITFCGV 403 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA------DFVCSE 173 NGVGK+T + K+ + + G +V++AA DTFR+ A++QL+ +A D S Sbjct: 404 NGVGKSTNLAKICFWLMENGYRVLIAACDTFRAGAVEQLRTHVRHLNALHPAEGDEEPSV 463 Query: 174 I------GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 I G DAA +A +A AQ + +DV++IDTAGR+ +N LM + K++ + Sbjct: 464 ILFEKGYGKDAAGIAMDAINFAQDRIIDVVLIDTAGRMQDNEPLMRSLAKLVHI------ 517 Query: 228 HAPHSVLQVLDATTGQNALRQVEMF-HAVAGTT---------GLIMTKMDGT-ARGGGLI 276 + P VL V +A G A+ Q++ F HA+ + G+++TK D + G I Sbjct: 518 NEPDLVLFVGEALVGNEAVDQLKKFNHAMMDFSKSDNPRLIDGILLTKFDTIDDKVGAAI 577 Query: 277 PIVVTHKIPVYFLGVGEGINDLE 299 + T P+ F+G G+ DL+ Sbjct: 578 SMTYTAGQPIVFVGTGQTYADLK 600 >gi|301117886|ref|XP_002906671.1| signal recognition particle receptor subunit alpha [Phytophthora infestans T30-4] gi|262108020|gb|EEY66072.1| signal recognition particle receptor subunit alpha [Phytophthora infestans T30-4] Length = 549 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 81/283 (28%), Positives = 132/283 (46%), Gaps = 35/283 (12%) Query: 46 REELE-------DLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLM 97 RE+LE +LI ++ VA ++ E ++T + + S R+ V + + L+ Sbjct: 260 REDLEPVITPMHQMLISKNVASEVADELCESVITTVVGQRLESFTRISTVVRKALEAALL 319 Query: 98 PLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 + P R + I+ VGVNGVGK+T + K+ + G+ VM+AA Sbjct: 320 RILTPKKSTDVLREILQAKSEGRAYSIVFVGVNGVGKSTSLSKVCYYLKSKGVNVMIAAC 379 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DTFRS A++QL A + D A++A EA K D ++IDTAGR+ N Sbjct: 380 DTFRSGAVEQLNQHAKVLDVELFQKGYAKDPASVAKEAIKYGTENGYDCVLIDTAGRMQN 439 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF-HAVAGTT------- 259 N LM + K++ + P VL V +A G + + Q+ MF A+A + Sbjct: 440 NEPLMRALAKLV------SNNEPDLVLFVGEALVGNDGIDQLSMFDRALADYSDRREPHR 493 Query: 260 --GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 G+++TK D + G + +V P+ F+G G+ L+ Sbjct: 494 IDGIVVTKFDTIDDKVGAAVSMVYKTGQPIMFVGTGQKYTHLK 536 >gi|194889839|ref|XP_001977167.1| GG18880 [Drosophila erecta] gi|190648816|gb|EDV46094.1| GG18880 [Drosophila erecta] Length = 615 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 137/288 (47%), Gaps = 41/288 (14%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP--- 102 +++ D LI ++ +A K+ + + T K + + + V E + + L+ + P Sbjct: 321 DKMRDHLISKNVATEIAAKLCDSVATSLDGKQMGTFDSIASQVKEALTQSLVRILSPKRR 380 Query: 103 -------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 + RP+ I+ GVNGVGK+T + K+ + + V++AA DTFR+ A+ Sbjct: 381 IDIIRDALESKRNGRPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAV 440 Query: 156 DQLKIWAD-------------RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +QL+ RT G DAA +A EA K A +VDV+++DTA Sbjct: 441 EQLRTHTRHLNALHPAAKHDGRTMVQLYEKGYGKDAAGIAMEAIKFAHDTRVDVVLVDTA 500 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259 GR+ +N LM + K+I+V + P VL V +A G A+ Q+ F+ ++A + Sbjct: 501 GRMQDNEPLMRSLSKLIKV------NNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSN 554 Query: 260 -------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 G+++TK D + G I + P+ F+G G+ DL+ Sbjct: 555 ENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLK 602 >gi|311744098|ref|ZP_07717904.1| signal recognition particle protein [Aeromicrobium marinum DSM 15272] gi|311313228|gb|EFQ83139.1| signal recognition particle protein [Aeromicrobium marinum DSM 15272] Length = 511 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 82/293 (27%), Positives = 140/293 (47%), Gaps = 19/293 (6%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S +L+ ++ RL D E+ L+ +D+ V+V + V + + Sbjct: 2 FDSLQDRLQSAFKNLRGKGRLTEADIDATAREIRLALLEADVSVSVVRDFVATVKERSAG 61 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + +L ++ + + P VI++ G+ G GKTT+ GKL Sbjct: 62 VEVSRALNPGQQVVKIVNEELIGILGGETRRIRF-AKNGPTVIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188 + + G ML A D R A+ QL++ + E G+ D +A A ++ Sbjct: 121 GLWLKEQGKSPMLVAADLQRPNAVTQLQVVGQQAGVTVFAPEPGNGTGDPVQVARRAMEE 180 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ DV+++DTAGRL ++ LM + + P VL V+DA GQ+A++ Sbjct: 181 ARRTLHDVVVVDTAGRLGIDAELMRQAADIRAAVD------PDEVLFVIDAMIGQDAVQT 234 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F TG+++TK+DG ARGG + + P+ F GE + D + F Sbjct: 235 AQAFADGVDFTGVVLTKLDGDARGGAALSVRQVTGRPIMFASTGEKLTDFDVF 287 >gi|117928770|ref|YP_873321.1| signal recognition particle subunit FFH/SRP54 (srp54) [Acidothermus cellulolyticus 11B] gi|117649233|gb|ABK53335.1| signal recognition particle subunit FFH/SRP54 (srp54) [Acidothermus cellulolyticus 11B] Length = 551 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 77/281 (27%), Positives = 137/281 (48%), Gaps = 15/281 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + + + + + ++S Q+V+ V+E + ++L Sbjct: 28 DATLREIRLALLEADVALPVVRDFLSGVRERARSAELSRALNPAQQVISIVNEELIRILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + P VIL+ G+ G GKTTV KL + ++ G +L A D R A++Q Sbjct: 88 GQARRLRF-AKNPPSVILLAGLQGSGKTTVAAKLGRWLAKQGHTPVLVAADLQRPNAVEQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L++ R E GS D +A + A+ + D+++IDTAGRL + +M Sbjct: 147 LQVLGARAEVPVFAPEPGSGVGDPVDVARRGVEFARRRLHDIVVIDTAGRLGVDEDMMR- 205 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + ++ D P +L V+DA GQ+A+ F G G+I+TK+DG ARGG Sbjct: 206 -----QAMEIRDATEPDEILFVVDAMVGQDAVTTARAFLDGVGFDGVILTKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + + F GE ++D + F + ++ I G D Sbjct: 261 ALSVASVTGKQILFASTGEKLDDFDVFHPERMASRILGMGD 301 >gi|91974990|ref|YP_567649.1| signal recognition particle protein [Rhodopseudomonas palustris BisB5] gi|91681446|gb|ABE37748.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rhodopseudomonas palustris BisB5] Length = 517 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 78/279 (27%), Positives = 136/279 (48%), Gaps = 13/279 (4%) Query: 43 DGVREELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V +K+ E+ + K V Q V+ V++ + ML Sbjct: 28 DAAMREIRRALLEADVALEVVRSFTEKVREQAVGATVVKSVKPGQMVVKIVNDELIAMLG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAID 156 S+ + + + P I++VG+ G GKTT KL+++M+ KV++A+ D +R AA++ Sbjct: 88 SDSQAIDLN-AVAPVPIMMVGLQGSGKTTTTAKLARRMTQRDKRKVLMASLDVYRPAAME 146 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL + D + +G +A A + + DV+++DTAGR + +M+ Sbjct: 147 QLAVLGRDLEIDTLPIVVGQKPQDIARRAMEAGRLGGYDVVLLDTAGRTTLDEDMMSEAA 206 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 ++ PH VL V D+ TGQ+A+ F G TG+++T++DG RGG + Sbjct: 207 EIKAAAN------PHEVLLVADSLTGQDAVNLARAFDERVGLTGIVLTRIDGDGRGGAAL 260 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + P+ +G GE + LE F + I G D Sbjct: 261 SMRAVTGKPIKLMGTGEKTDALEDFHPSRIAGRILGMGD 299 >gi|330802872|ref|XP_003289436.1| signal recognition particle 54 kDa subunit [Dictyostelium purpureum] gi|325080478|gb|EGC34032.1| signal recognition particle 54 kDa subunit [Dictyostelium purpureum] Length = 516 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 74/277 (26%), Positives = 138/277 (49%), Gaps = 18/277 (6%) Query: 47 EELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKM--LMP 98 +E+ + L +SD+ +++ + I E++ + A ++ ++++ V ELI + +P Sbjct: 33 KEIGNALSKSDVSMSLIIQMRKNIKEKVKLDQIAAGLNKRKIIRKVVFEELIRLVDPGVP 92 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 L KP + +V++ VG+ G GKTT + KL+ G + DTFR+ A DQ+ Sbjct: 93 LWKPV----KGKSNVVMFVGLQGAGKTTSVTKLAYYYKKKGWSTAIVCADTFRAGAFDQV 148 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 + A + + S+ D +A + + +++I+DT+GR +S L + ++ Sbjct: 149 RHNAAKGKIQYYGSDTEKDPVVVAKAGVDIFKKEGTEIIIVDTSGRHKQDSELFEEMKQI 208 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +K P +V+ V+D++ GQ A Q F +I+TKMDG ++GGG + Sbjct: 209 ETAVK------PDNVIFVMDSSIGQAAYEQATAFKNSVKVGSIIITKMDGNSKGGGALSG 262 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + P+ F+G GE + DL+ F + F + G D Sbjct: 263 IAATGSPIIFIGTGEHLTDLDLFDPETFVNKLLGNGD 299 >gi|164428471|ref|XP_001728457.1| hypothetical protein NCU11187 [Neurospora crassa OR74A] gi|157072159|gb|EDO65366.1| hypothetical protein NCU11187 [Neurospora crassa OR74A] Length = 659 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 35/283 (12%) Query: 40 RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVS--ELIHKML 96 RL +GV +EL IGV E + T+ + A +VS+ ++L S +L+ ++ Sbjct: 384 RLCEGVEKEL--------IGVKTGS--FESINTRIQKAMEVSLTKMLTPTSSLDLLREID 433 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 S P RP+V+ +VGVNGVGK+T + K+ + KV++AAGDTFRS A++ Sbjct: 434 SITSPPATSLRKARPYVMSIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVE 493 Query: 157 QLKIWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 QL + R + E G DAAA+A +A A + DV++IDTAGR H Sbjct: 494 QLAVHV-RNLKELTQREGGKVELYQKGYGKDAAAVAKDAVAFAAQEGFDVVLIDTAGRRH 552 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLI 262 N+ LM+ + K + + P +L V +A G +++ Q + F+A G G I Sbjct: 553 NDQRLMSSLEKFAKFAQ------PDKILMVGEALVGTDSVAQAKNFNASFGAGRSLDGFI 606 Query: 263 MTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 ++K D G ++ IV +PV F+GVG+ +DL F K Sbjct: 607 ISKCDTVGDMVGTIVSIVHATNVPVLFVGVGQHYSDLRNFSVK 649 >gi|148377845|ref|YP_001256721.1| Signal recognition particle protein [Mycoplasma agalactiae PG2] gi|148291891|emb|CAL59282.1| Signal Recognition Particle Protein [Mycoplasma agalactiae PG2] Length = 452 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/283 (26%), Positives = 134/283 (47%), Gaps = 23/283 (8%) Query: 44 GVREELEDLLIRSDIGVAVAQKIVEELLTKRY---------AKDVSVQRVLYDVSELIHK 94 GV +++ L+ +D+ + V + V + K A+ ++ V ++ +++ K Sbjct: 29 GVTRDIKMALLEADVNLKVVKDFVANVKEKALSANLVGTLNAEQTMIKIVHNELVDILGK 88 Query: 95 MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRS 152 + P+ + + +P++I++ G+ G GKTT K++ K + K +L A D +R Sbjct: 89 EVRPI------EITKKPYIIMMTGLQGSGKTTACAKIAYFLKKKNQIEKPLLVAADIYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AA+ QL A D+ A + +A A+ K D++IIDTAGRL + LM Sbjct: 143 AAVQQLVTLAKGIQVDYFEKGTNFSAQEIVKDALVFAKENKNDLIIIDTAGRLSIDEPLM 202 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + ++ + P V V DA +GQ+ + F+ TG ++TK+D ARG Sbjct: 203 NELWELKNI------SEPQEVFFVADALSGQDIINVASTFNDRLKLTGSVITKLDSDARG 256 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + +P+ F+G GE I++L+ F + I G D Sbjct: 257 GAALSFSKVLSLPIRFIGTGEKISNLDLFYPDRMADRILGMGD 299 >gi|23014875|ref|ZP_00054671.1| COG0541: Signal recognition particle GTPase [Magnetospirillum magnetotacticum MS-1] Length = 454 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/205 (35%), Positives = 108/205 (52%), Gaps = 6/205 (2%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VIL+VG+ G GKTT K++ K+ KV+LA+ D +R AA QL+I A + + Sbjct: 100 PVVILMVGLQGSGKTTTSAKIALKLKKEKKKVLLASLDVYRPAAQQQLQILAGQAEVGSL 159 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 +G A++ A + + DV+I+DTAGRLH + LMA + + D P Sbjct: 160 PIVMGEMPVAISKRALDVGRKEGYDVVILDTAGRLHIDQELMAEVAAV------RDAAKP 213 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 L V DA GQ+A+ F+ G TG+++T++DG ARGG + + P+ FLG Sbjct: 214 TETLLVTDAMVGQDAVTLAREFNEKVGVTGIVLTRIDGDARGGAALSMRAITGRPIKFLG 273 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 GE ++ LE F + I G D Sbjct: 274 AGEKLDALEVFHPDRIAGRILGMGD 298 >gi|296471767|gb|DAA13882.1| signal recognition particle receptor subunit alpha [Bos taurus] Length = 597 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 83/285 (29%), Positives = 138/285 (48%), Gaps = 41/285 (14%) Query: 18 TKGFASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 TKG + +G+ S R D + V +++ D LI ++ +A ++ E + K Sbjct: 314 TKGTLGGMFGMLKGLVGSKSLTREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEG 373 Query: 77 KDV-SVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKT 125 K + + V V + + + L+ + +P + RP+V+ GVNGVGK+ Sbjct: 374 KVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKS 433 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-------------DFVCS 172 T + K+S + + G V++AA DTFR+ A++QL+ R SA Sbjct: 434 TNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEK 493 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 G DAA +A EA A+ + DV+++DTAGR+ +N+ LM + K+I V + P Sbjct: 494 GYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDL 547 Query: 233 VLQVLDATTGQNALRQVEMF------HAVAGTT----GLIMTKMD 267 VL V +A G A+ Q+ F H++A T G+++TK D Sbjct: 548 VLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFD 592 >gi|312382726|gb|EFR28083.1| hypothetical protein AND_04404 [Anopheles darlingi] Length = 668 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 134/289 (46%), Gaps = 37/289 (12%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP--- 98 ++L D LI ++ +AQ++ E + K + D V ++E + ++L P Sbjct: 346 DKLRDHLIAKNVATDIAQQLCESVAVKLEGRVIGTFDTIAATVKTTLTEALVQILSPKRR 405 Query: 99 ---LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 L + RP V+ GVNGVGK+T + K+ + + L V++AA DTFR+ A+ Sbjct: 406 IDILRDCLEAKRAGRPFVMSFCGVNGVGKSTNLAKICFWLIENNLSVLIAACDTFRAGAV 465 Query: 156 DQLKI-------------WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +QL+ R+ G DAA +A EA + A +D+++IDTA Sbjct: 466 EQLRTHMRHLNALHPPERHGGRSMVQLYEKGYGKDAAGIAMEAIRHAHDSGIDLVLIDTA 525 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT---- 258 GR+ +N LM + K+I+V + P VL V +A G A+ Q+ + Sbjct: 526 GRMQDNEPLMRALAKLIKV------NEPDLVLFVGEALVGNEAVDQLVNLADYSSRDRPH 579 Query: 259 --TGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 G+++TK D + G I + P+ F+G G+ DL+ AK Sbjct: 580 IIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKALNAK 628 >gi|291320541|ref|YP_003515805.1| signal recognition particle protein [Mycoplasma agalactiae] gi|290752876|emb|CBH40851.1| Signal Recognition Particle Protein [Mycoplasma agalactiae] Length = 452 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/283 (26%), Positives = 135/283 (47%), Gaps = 23/283 (8%) Query: 44 GVREELEDLLIRSDIGVAVAQKIVEELLTKRY---------AKDVSVQRVLYDVSELIHK 94 GV +++ L+ +D+ + V + V + K A+ ++ V ++ +++ K Sbjct: 29 GVTRDIKMALLEADVNLKVVKDFVANVKEKALSANLVGTLNAEQTMIKIVHNELVDILGK 88 Query: 95 MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRS 152 + P+ + + +P++I++ G+ G GKTT K++ K + K +L A D +R Sbjct: 89 EVRPI------EITKKPYIIMMTGLQGSGKTTACAKIAYFLKKKNQIEKPLLVAADIYRP 142 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AA+ QL A D+ A + +A A+ K D++IIDTAGRL + LM Sbjct: 143 AAVQQLVTLAKGIQVDYFEKGTNFSAQEIVKDALVFAKENKNDLIIIDTAGRLSIDEPLM 202 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + ++ + P + V DA +GQ+ + F+ TG ++TK+D ARG Sbjct: 203 NELWELKNI------SEPQEIFFVADALSGQDIINVASAFNDRLKLTGSVITKLDSDARG 256 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + + +P+ F+G GE I++L+ F + I G D Sbjct: 257 GAALSLSKVLSLPIRFIGTGEKISNLDLFYPDRMADRILGMGD 299 >gi|195399363|ref|XP_002058290.1| GJ16008 [Drosophila virilis] gi|194150714|gb|EDW66398.1| GJ16008 [Drosophila virilis] Length = 633 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 83/303 (27%), Positives = 145/303 (47%), Gaps = 44/303 (14%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP--- 102 E++ D LI ++ +A K+ + + T K + + + V E + + L+ + P Sbjct: 339 EKMRDHLISKNVASEIAAKLCDSVATSLEGKQMGTFDSIANMVKEALTQSLVRILSPKRR 398 Query: 103 -------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 + +P+ I+ GVNGVGK+T + K+ + + V++AA DTFR+ A+ Sbjct: 399 IDIIRDALESKRNGKPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAV 458 Query: 156 DQLKIWAD-------------RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +QL+ RT G DAA +A EA K A +VDV+++DTA Sbjct: 459 EQLRTHTRHLNALHPAAKHNGRTMVQLYEKGYGKDAAGIAMEAIKYAHDTRVDVVLVDTA 518 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259 GR+ +N LM + K+I+V + P VL V +A G A+ Q+ F+ ++A + Sbjct: 519 GRMQDNEPLMRSLSKLIKV------NNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSN 572 Query: 260 -------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 G+++TK D + G I + P+ F+G G+ DL+ A + +AV++ Sbjct: 573 ENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLK---AINVNAVVS 629 Query: 312 GCL 314 + Sbjct: 630 SLM 632 >gi|15618039|ref|NP_224323.1| Signal recognition particle GTPase [Chlamydophila pneumoniae CWL029] gi|4376378|gb|AAD18268.1| Signal Recognition Particle GTPase [Chlamydophila pneumoniae CWL029] Length = 448 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 92/309 (29%), Positives = 149/309 (48%), Gaps = 30/309 (9%) Query: 23 STSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLTKR 74 S S KL + ++SSRR+ ++ + E + ++ L+ +D+ V + K+ E++L + Sbjct: 4 SLSQKLSSIFSFLVSSRRINEENISESIREVRLALLDADVNYHVVKDFISKVKEKILGEE 63 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS--HRPHVILVVGVNGVGKTTVIGKLS 132 K VS + +H+ L+ +F+ P +IL+ G+ G GKTT KL+ Sbjct: 64 IWKHVSPGQQFI---RCLHEELVAFLSDGREEFTIQKTPSIILLCGLQGAGKTTTAAKLA 120 Query: 133 KKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE----IGSDAAALAYEAF 186 + + KV++ D R AA+DQLKI +T A+F S+ I ALAY Sbjct: 121 DYVIKNKKAKKVLVVPCDLKRFAAVDQLKILVAQTKAEFYQSQENKPINVVVKALAY--- 177 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A+ D +I+DTAGRL+ ++ LM + + +V + L V++ GQ+ L Sbjct: 178 --AKENGHDFVILDTAGRLNIDNELMEELTAIQKV------SQANERLFVMNVAMGQDVL 229 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 V+ F TG+I++ DG AR G + I P+ F G GE I DL F + Sbjct: 230 ATVQAFDQSLDLTGVILSMTDGDARAGAVFSIKHVLGKPIKFEGCGERIQDLRSFDPQSM 289 Query: 307 SAVITGCLD 315 + I G D Sbjct: 290 AERILGMGD 298 >gi|297464866|ref|XP_002703534.1| PREDICTED: signal recognition particle receptor subunit alpha-like [Bos taurus] Length = 618 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 83/285 (29%), Positives = 138/285 (48%), Gaps = 41/285 (14%) Query: 18 TKGFASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 TKG + +G+ S R D + V +++ D LI ++ +A ++ E + K Sbjct: 314 TKGTLGGMFGMLKGLVGSKSLTREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEG 373 Query: 77 KDV-SVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKT 125 K + + V V + + + L+ + +P + RP+V+ GVNGVGK+ Sbjct: 374 KVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKS 433 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-------------DFVCS 172 T + K+S + + G V++AA DTFR+ A++QL+ R SA Sbjct: 434 TNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEK 493 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 G DAA +A EA A+ + DV+++DTAGR+ +N+ LM + K+I V + P Sbjct: 494 GYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDL 547 Query: 233 VLQVLDATTGQNALRQVEMF------HAVAGTT----GLIMTKMD 267 VL V +A G A+ Q+ F H++A T G+++TK D Sbjct: 548 VLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFD 592 >gi|302835766|ref|XP_002949444.1| hypothetical protein VOLCADRAFT_74239 [Volvox carteri f. nagariensis] gi|300265271|gb|EFJ49463.1| hypothetical protein VOLCADRAFT_74239 [Volvox carteri f. nagariensis] Length = 642 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 112/231 (48%), Gaps = 42/231 (18%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P+VI+ GVNGVGK+T + K++ + G+KVM+AA DTFR+ A++QLK R Sbjct: 410 KPYVIVFCGVNGVGKSTNLAKIAYWLGGHGIKVMIAACDTFRAGAVEQLKTHCARLRVPL 469 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 D A +AYEA +QA+ V+++DTAGR+ +N LM + +I V + Sbjct: 470 YERGYEKDPAKVAYEAIRQAERDGQHVVLVDTAGRMQDNQPLMRALSNLIAV------NN 523 Query: 230 PHSVLQVLDATTGQNALRQVEMFH-------------------AVAGT------------ 258 P+ VL V +A G +A+ Q+ F+ V+G Sbjct: 524 PNLVLFVGEALVGNDAVDQLTKFNKALSDLAPTAAAAAASGATGVSGRGNDDGSALTRRH 583 Query: 259 ----TGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 G+++TK D + G + +V T PV F+G G+ DL+ K Sbjct: 584 GGVIDGIVLTKFDTIDDKVGAALSMVYTSGAPVMFVGCGQTYVDLKKLNVK 634 >gi|256824943|ref|YP_003148903.1| signal recognition particle subunit FFH/SRP54 (srp54) [Kytococcus sedentarius DSM 20547] gi|256688336|gb|ACV06138.1| signal recognition particle subunit FFH/SRP54 (srp54) [Kytococcus sedentarius DSM 20547] Length = 604 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 132/290 (45%), Gaps = 35/290 (12%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ + V ++ + + +VS Q+V+ V+E + +L ++ F Sbjct: 38 LLDADVALPVVKQFTSVVRERATGAEVSQALNPAQQVVKIVNEELVDILGGETRTIR--F 95 Query: 108 SHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + RP VI++ G+ G GKTT+ GKL + G +L A D R A++QL++ +R Sbjct: 96 AKRPPTVIMLAGLQGAGKTTLAGKLGHWLKQQGHTPLLVACDLQRPNAVNQLQVVGERAG 155 Query: 167 ADFVCSEIGS------------------DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 E G+ D +A Q QA++ DV+IIDTAGRL + Sbjct: 156 VPVYAPEKGNVFGHDAALDTGEGTRSFGDPVEVARRGVAQGQARQHDVVIIDTAGRLAVD 215 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM + + P VL V+DA GQ A+ F TG++++K+DG Sbjct: 216 ENLMQQAADIRAAVN------PEEVLFVIDAMIGQAAIDTAMAFDEGVNFTGVVLSKLDG 269 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318 ARGG + + PV F GE + D E F ++ I LD G+ Sbjct: 270 DARGGAALSVASVTGKPVMFASTGEQVKDFEVFHPDRMASRI---LDMGD 316 >gi|58221317|gb|AAW68301.1| regulatory protein PilA [Neisseria gonorrhoeae] Length = 140 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 50/118 (42%), Positives = 77/118 (65%), Gaps = 1/118 (0%) Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 + E ++ ++ PL KP + P VI++ G+NG GKTT IGKL+K G V+LAAG Sbjct: 22 LKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAG 81 Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 DTFR+AA +QL+ W + V S+ D+AA+ ++A + A+A+ +D+++ DTAGRL Sbjct: 82 DTFRAAAREQLQAWGGCNNVT-VISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRL 138 >gi|332372748|gb|AEE61516.1| unknown [Dendroctonus ponderosae] Length = 623 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 111/221 (50%), Gaps = 30/221 (13%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 + RP V+ GVNGVGK+T + K+ + + L+V++AA DTFR+ A++QL+ +A Sbjct: 401 NRRPFVMSFCGVNGVGKSTNLSKICFWLIENDLQVLIAACDTFRAGAVEQLRTHMRHLNA 460 Query: 168 -------------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 G DAA +A EA K A+ KVDV++IDTAGR+ +N LM Sbjct: 461 LHPPDRHGGKQMVQLYEKGYGKDAAGIAMEAIKFARDTKVDVVLIDTAGRMQDNEPLMRA 520 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-----AGTT-----GLIMT 264 + K+I+V + P VL V +A G A+ Q+ F+ A T G+++T Sbjct: 521 LTKLIKV------NEPDLVLFVGEALVGNEAVDQLVKFNQALADYSANTNPHLIDGIVLT 574 Query: 265 KMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 K D + G I + P+ F+G G+ DL+ K Sbjct: 575 KFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKALNVK 615 >gi|331241410|ref|XP_003333353.1| signal recognition particle receptor subunit alpha [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309312343|gb|EFP88934.1| signal recognition particle receptor subunit alpha [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 691 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 110/225 (48%), Gaps = 39/225 (17%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA----- 162 S P+V+ VGVNGVGK+T + K++ + L+V++AA DTFRS A++QL+ Sbjct: 460 STAPYVMTFVGVNGVGKSTNLSKVAFWLLQNRLRVLIAACDTFRSGAVEQLRTHVRNLGK 519 Query: 163 ---------------DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 +R + G DAA +A EA + A+ DV++IDTAGR+ + Sbjct: 520 LDGAIEHQSPNSNHEERKMIELFEKGYGKDAAGIAKEAIQYAKNDGFDVVLIDTAGRMQD 579 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF------------HAV 255 N LM +GK++ V + P +L V +A G A+ Q+ F H Sbjct: 580 NEPLMRALGKLVVV------NQPDKILFVGEALVGNEAVDQLGKFDKSLKTFSGLDSHLP 633 Query: 256 AGTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 G G+I+TK D + G + + T P+ F+G G+ DL+ Sbjct: 634 RGIDGIILTKFDTIDDKVGAALSMTYTINQPILFVGTGQTYTDLK 678 >gi|224613354|gb|ACN60256.1| Signal recognition particle receptor subunit alpha [Salmo salar] Length = 521 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 111/220 (50%), Gaps = 30/220 (13%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA- 167 RP VI GVNGVGK+T + K+S + + G V++AA DTFR+ A++QL+ R ++ Sbjct: 299 RRPFVITFCGVNGVGKSTNLAKISFWLIENGFTVLIAACDTFRAGAVEQLRTHQRRLNSL 358 Query: 168 ------------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 G DAA +A EA A+ + DV+++DTAGR+ +N+ LM + Sbjct: 359 HPPQDHGGRPIVQLYEKGYGKDAAGIAMEAIAYARNQAFDVVLVDTAGRMQDNTPLMTAL 418 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF------HAVAGTT----GLIMTK 265 K+I V + P VL V +A G A+ Q+ F H+++ G+++TK Sbjct: 419 AKLIAV------NMPDLVLFVGEALVGNEAVDQLVKFNQALADHSMSDKPRLIDGIVLTK 472 Query: 266 MDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 D + G I + P+ F+G G+ NDL A+ Sbjct: 473 FDTIDDKVGAAISMTYITGQPIVFVGTGQTYNDLRSLNAR 512 >gi|194246474|ref|YP_002004113.1| Signal recognition particle, subunit FFH/SRP54 [Candidatus Phytoplasma mali] gi|193806831|emb|CAP18260.1| Signal recognition particle, subunit FFH/SRP54 [Candidatus Phytoplasma mali] Length = 456 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/281 (27%), Positives = 141/281 (50%), Gaps = 21/281 (7%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPL 99 + EE+ L+++D+ V ++ ++ +K ++V Q+V+ +++ + ++L Sbjct: 29 IMEEIRLSLLQADVNYEVVEEFNSKVKSKALGQEVLKSLNPSQQVIKILNDTLVEVLNSK 88 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS----KKMSDAGLKVMLAAGDTFRSAAI 155 + N+ ++ +++G+ G GKTT GKL+ KK KV+L A D +R AI Sbjct: 89 NIHLNFANNNEITTFMLIGLQGSGKTTTAGKLAILAHKKFQK---KVLLIACDIYRPGAI 145 Query: 156 DQLKIWADRTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 +QL+ +R + + F ++ + E K A + DV+IIDTAG L N ++ Sbjct: 146 EQLQDIGNRININVFFKKDVT--VENIISEGLKYASLNQYDVVIIDTAGTLSINKAMIQE 203 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + KMI+ L P + V+D G+ + F+ TG+I+TKMD +GG Sbjct: 204 L-KMIKNLSN-----PSEIFLVVDVLFGKEITNVAKTFNEKLQVTGVILTKMDADVKGGA 257 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ++ + T +P+ + E INDLE F AK ++ + G D Sbjct: 258 VLSVKATTNLPIKLMSSSEKINDLEFFDAKRMASRLLGMGD 298 >gi|195438862|ref|XP_002067351.1| GK16226 [Drosophila willistoni] gi|194163436|gb|EDW78337.1| GK16226 [Drosophila willistoni] Length = 624 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 83/303 (27%), Positives = 145/303 (47%), Gaps = 44/303 (14%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP--- 102 E++ D LI ++ +A K+ + + T K + + + V E + + L+ + P Sbjct: 330 EKMRDHLISKNVASEIAIKLCDSVATSLEGKQMGTFDSIATLVKEALTQSLVRILSPKRR 389 Query: 103 -------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 + +P+ I+ GVNGVGK+T + K+ + + V++AA DTFR+ A+ Sbjct: 390 IDIIRDALESKRNGKPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAV 449 Query: 156 DQLKIWA-------------DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +QL+ +R+ G DAA +A EA K A KVDV+++DTA Sbjct: 450 EQLRTHTRHLNALHPPAKHNNRSMVQLYEKGYGKDAAGIAMEAIKYAHDTKVDVVLVDTA 509 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259 GR+ +N LM + K+I+V + P VL V +A G A+ Q+ F+ ++A + Sbjct: 510 GRMQDNEPLMRSLSKLIKV------NNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSN 563 Query: 260 -------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 G+++TK D + G I + P+ F+G G+ DL+ A + +AV+ Sbjct: 564 ENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLK---AINVNAVVN 620 Query: 312 GCL 314 + Sbjct: 621 SLM 623 >gi|86747479|ref|YP_483975.1| signal recognition particle protein [Rhodopseudomonas palustris HaA2] gi|86570507|gb|ABD05064.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rhodopseudomonas palustris HaA2] Length = 514 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/279 (28%), Positives = 135/279 (48%), Gaps = 13/279 (4%) Query: 43 DGVREELEDLLIRSDIGVAVAQ----KIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + K+ E+ + K V Q V+ V++ + ML Sbjct: 28 DAAMREIRRALLEADVALEVVRSFTDKVREQAVGATVVKSVKPGQMVVKIVNDELIAMLG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156 S+ + + + P I++VG+ G GKTT KL+++M S KV++A+ D +R AA++ Sbjct: 88 SDSQAIDLN-AVAPVPIMMVGLQGSGKTTTTAKLARRMTSRDKRKVLMASLDVYRPAAME 146 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL + S D + G +A A + + DV+++DTAGR + +M Sbjct: 147 QLAVLGRDLSIDTLPIVAGQKPPDIARRAMEAGRLGGYDVVLLDTAGRTTLDEDMMTEAA 206 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 ++ PH VL V D+ TGQ+A+ F G TG+++T++DG RGG + Sbjct: 207 EIKAAAN------PHEVLLVADSLTGQDAVNLARAFDERVGLTGIVLTRIDGDGRGGAAL 260 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + P+ +G GE + LE F + I G D Sbjct: 261 SMRAVTGKPIKLMGTGEKTDALEDFHPSRIAGRILGMGD 299 >gi|14719791|pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From A. Ambivalens T112a Mutant Length = 297 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 89/315 (28%), Positives = 146/315 (46%), Gaps = 38/315 (12%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV----AVA 63 S+ L +R + F + S + + D I +EL+ LI +D+ V ++ Sbjct: 1 SKLLDNLRDTVRKFLTGSSSYDKAVEDFI----------KELQKSLISADVNVKLVFSLT 50 Query: 64 QKIVEELLTKRYAKDVSVQ----RVLYDVSELIHKMLMPLSKPFNWDFSHR------PHV 113 KI E L ++ + + +++YD LS F D + P+V Sbjct: 51 NKIKERLKNEKPPTYIERREWFIKIVYD----------ELSNLFGGDKEPKVIPDKIPYV 100 Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 I++VGV G GK T GKL+ G KV L D +R AA++QL+ + Sbjct: 101 IMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEP 160 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 D +A ++ ++K++++I+DTAGR H A + +M + + + P V Sbjct: 161 GEKDVVGIAKRGVEKFLSEKMEIIIVDTAGR-HGYGEEAALLEEMKNIYEAIKPD---EV 216 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 V+DA+ GQ A F+ + +I+TKMDGTA+GGG + V + F+G GE Sbjct: 217 TLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAVAATGATIKFIGTGE 276 Query: 294 GINDLEPFVAKDFSA 308 I++LE F + F A Sbjct: 277 KIDELEVFNPRRFVA 291 >gi|15835651|ref|NP_300175.1| signal recognition particle GTPase [Chlamydophila pneumoniae J138] gi|16752929|ref|NP_445200.1| signal recognition particle protein FFH [Chlamydophila pneumoniae AR39] gi|33241451|ref|NP_876392.1| signal recognition particle chain [Chlamydophila pneumoniae TW-183] gi|7189572|gb|AAF38471.1| signal recognition particle protein FFH [Chlamydophila pneumoniae AR39] gi|8978489|dbj|BAA98326.1| signal recognition particle GTPase [Chlamydophila pneumoniae J138] gi|33235959|gb|AAP98049.1| signal recognition particle chain [Chlamydophila pneumoniae TW-183] Length = 448 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 92/309 (29%), Positives = 149/309 (48%), Gaps = 30/309 (9%) Query: 23 STSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLTKR 74 S S KL + ++SSRR+ ++ + E + ++ L+ +D+ V + K+ E++L + Sbjct: 4 SLSQKLSSIFSFLVSSRRINEENISESIREVRLALLDADVNYHVVKDFISKVKEKILGEE 63 Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS--HRPHVILVVGVNGVGKTTVIGKLS 132 K VS + +H+ L+ +F+ P +IL+ G+ G GKTT KL+ Sbjct: 64 IWKHVSPGQQFI---RCLHEELVAFLSDGREEFTIQKTPSIILLCGLQGAGKTTTAAKLA 120 Query: 133 KKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE----IGSDAAALAYEAF 186 + + KV++ D R AA+DQLKI +T A+F S+ I ALAY Sbjct: 121 DYVIKNKKAKKVLVVPCDLKRFAAVDQLKILVAQTKAEFYQSQENKPIDVVVKALAY--- 177 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A+ D +I+DTAGRL+ ++ LM + + +V + L V++ GQ+ L Sbjct: 178 --AKENGHDFVILDTAGRLNIDNELMEELTAIQKV------SQANERLFVMNVAMGQDVL 229 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 V+ F TG+I++ DG AR G + I P+ F G GE I DL F + Sbjct: 230 ATVQAFDQSLDLTGVILSMTDGDARAGAVFSIKHVLGKPIKFEGCGERIQDLRSFDPQSM 289 Query: 307 SAVITGCLD 315 + I G D Sbjct: 290 AERILGMGD 298 >gi|316931782|ref|YP_004106764.1| signal recognition particle protein [Rhodopseudomonas palustris DX-1] gi|315599496|gb|ADU42031.1| signal recognition particle protein [Rhodopseudomonas palustris DX-1] Length = 514 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/214 (30%), Positives = 109/214 (50%), Gaps = 8/214 (3%) Query: 104 NWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIW 161 + D + P V I++VG+ G GKTT KL+++M++ KV++A+ D +R AA++QL + Sbjct: 92 SIDLNAVPPVPIMMVGLQGSGKTTTTAKLARRMTERDKRKVLMASLDVYRPAAMEQLAVL 151 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 S D + G +A A + + DV+++DTAGR + +M ++ Sbjct: 152 GRDLSIDTLPIVAGQQPPDIARRAMEAGKLGGYDVVLLDTAGRTTLDEEMMTEAAEIKAA 211 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 PH VL V D+ TGQ+A+ F G TG+++T++DG RGG + + Sbjct: 212 AN------PHEVLLVADSLTGQDAVNLARAFDQRVGLTGIVLTRIDGDGRGGAALSMRAV 265 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ +G GE + LE F ++ I G D Sbjct: 266 TGKPIKLMGTGEKTDALEDFHPSRIASRILGMGD 299 >gi|311898552|dbj|BAJ30960.1| putative signal recognition particle protein [Kitasatospora setae KM-6054] Length = 519 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/281 (27%), Positives = 140/281 (49%), Gaps = 15/281 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V + ++++ + +VS Q+++ V+E + +L Sbjct: 28 DATAREIRIALLEADVALPVVRAFIKQVKDRALGSEVSGALNPAQQIIKIVNEELISILG 87 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 ++ + + P VI++ G+ G GKTT+ GKL + +L A D R A+ Q Sbjct: 88 GETRRLRFAKTG-PTVIMLAGLQGAGKTTLAGKLGHWLKSQKHTPLLVACDLQRPNAVTQ 146 Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 L + A+R F + G+ D +A ++ + A+ K+ DV+I+DTAGRL ++ LM Sbjct: 147 LGVVAERAGVAFYGPQPGNGVGDPVQVARDSIEYAKQKQYDVVIVDTAGRLGIDAELMR- 205 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + + +DP VL V+DA GQ+A+ + F TG++++K+DG ARGG Sbjct: 206 --QAADIRAAIDPD---EVLFVVDAMVGQDAVTTAQAFLEGVDFTGVVLSKLDGDARGGA 260 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + + F GE ++D + F ++ I G D Sbjct: 261 ALSVAHVTGRQIMFASNGEKVDDFDAFHPDRMASRILGMGD 301 >gi|321473979|gb|EFX84945.1| hypothetical protein DAPPUDRAFT_300824 [Daphnia pulex] Length = 621 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 83/295 (28%), Positives = 140/295 (47%), Gaps = 41/295 (13%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-----VSELIHKMLMP- 98 V +++ D LI ++ +A K+ + + K K + L + ++E + ++L P Sbjct: 325 VLDKMRDHLIAKNVASEIAGKLCDSVAAKLNGKVLGTFESLANTVKASLTESLVQILSPR 384 Query: 99 -----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 L F +RP+V+ GVNGVGK+T + K+ + + +V++AA DTFR+ Sbjct: 385 RRVDILRDVFESQRQNRPYVMSFCGVNGVGKSTNLAKICFWLIENNFRVLIAACDTFRAG 444 Query: 154 AIDQLKI-------------WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 A++QL+ R G DAA +A EA A+ +DV++ID Sbjct: 445 AVEQLRTHMRHLNSIHPPEKHGGRQMVQLYEKGYGKDAAGIALEAINYARDGGIDVVMID 504 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT 259 TAGR+ +N LM + K+I+V + P VL V +A G A+ Q+ F+ A+A + Sbjct: 505 TAGRMQDNEPLMRALAKLIKV------NEPDLVLFVGEALVGNEAVDQLVKFNQALADYS 558 Query: 260 ---------GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 G+++TK D + G I + P+ F+G G+ DL+ K Sbjct: 559 NSENPHTIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFIGTGQTYADLKTLNVK 613 >gi|298526385|ref|ZP_07013794.1| signal peptide binding domain-containing protein [Mycobacterium tuberculosis 94_M4241A] gi|298496179|gb|EFI31473.1| signal peptide binding domain-containing protein [Mycobacterium tuberculosis 94_M4241A] Length = 462 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/212 (34%), Positives = 108/212 (50%), Gaps = 13/212 (6%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P V+++ G+ G GKTT+ GKL+ ++ G +L A D R AA++QL++ +R Sbjct: 37 PTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVF 96 Query: 171 CSEIGS-------DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 G+ D A+A +A+AK DV+I+DTAGRL + LMA IR Sbjct: 97 APHPGASPESGPGDPVAVAAAGLAEARAKHFDVVIVDTAGRLGIDEELMA-QAAAIR--- 152 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 D P VL VLDA GQ+A+ F G TG+ +TK+DG ARGG + + Sbjct: 153 --DAINPDEVLFVLDAMIGQDAVTTAAAFGEGVGFTGVALTKLDGDARGGAALSVREVTG 210 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +P+ F GE + D + F ++ I G D Sbjct: 211 VPILFASTGEKLEDFDVFHPDRMASRILGMGD 242 >gi|330993998|ref|ZP_08317928.1| Signal recognition particle protein [Gluconacetobacter sp. SXCC-1] gi|329758944|gb|EGG75458.1| Signal recognition particle protein [Gluconacetobacter sp. SXCC-1] Length = 453 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 112/215 (52%), Gaps = 8/215 (3%) Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKI 160 P N + + P IL+VG+ G GKTT GK++++++ K V+LA+ DT R AA QL Sbjct: 82 PLNLNAAP-PVPILMVGLQGSGKTTTSGKIARRLAQRERKKVLLASLDTQRPAAQLQLAQ 140 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A+R + G +A A + + D++I+DTAGRL + LM + + IR Sbjct: 141 LAERAGVASLPIIAGQTPVQIAQRAMDTGRREGYDIVILDTAGRLSIDEALMDEV-RAIR 199 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 P L V+DA TGQ+A+ + F+ G TG++MT+MDG ARGG + + Sbjct: 200 A-----ETDPAETLLVVDAMTGQDAVNTAKAFNEAVGVTGVVMTRMDGDARGGAALSMRA 254 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ G GE ++ LE F + + I G D Sbjct: 255 ITGAPIKLTGSGEKLDALEEFHPERVAGRILGLGD 289 >gi|15895031|ref|NP_348380.1| Signal recognition particle GTPase Ffh [Clostridium acetobutylicum ATCC 824] gi|15024723|gb|AAK79720.1|AE007684_8 Signal recognition particle GTPase Ffh [Clostridium acetobutylicum ATCC 824] gi|325509168|gb|ADZ20804.1| Signal recognition particle GTPase Ffh [Clostridium acetobutylicum EA 2018] Length = 449 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 89/307 (28%), Positives = 153/307 (49%), Gaps = 22/307 (7%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F S KL+ + + +S + + D +RE ++ L+ +D+ + + V+ + K Sbjct: 3 FEGLSTKLQAAMKKLRGKGKLSEKDIKDAMRE-VKLALLEADVNYKIVKNFVKVVGEKCL 61 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +V Q+V+ V+E + ++ ++ + VI+ VG+ G GKTT+ GK Sbjct: 62 GNEVMESLTPGQQVIKIVNEELTNLMGKEESKIEFE-ENGITVIMAVGLQGAGKTTMCGK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--DAAALAYEAFKQ 188 LS + K +L A D +R AAI QL++ S D +G + ++ A K Sbjct: 121 LSLSLKKKNKKPLLVACDIYRPAAIKQLEVVG--KSIDVPVFSMGDKVNPVDISKAAMKH 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ ++V+IIDTAGRLH + LM + + + P +L V+D+ TGQ+A+ Sbjct: 179 AKENGLNVVIIDTAGRLHIDDQLMNELENIKSEVN------PKEILLVVDSMTGQDAVNV 232 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 E F TG+++TK+DG RGG + I P+ ++G+GE +ND+E F ++ Sbjct: 233 AESFDNKLELTGVVLTKLDGDTRGGAALSIREMTGKPIKYVGLGEKMNDIEIFHPDRMAS 292 Query: 309 VITGCLD 315 I G D Sbjct: 293 RILGMGD 299 >gi|269955965|ref|YP_003325754.1| signal recognition particle protein [Xylanimonas cellulosilytica DSM 15894] gi|269304646|gb|ACZ30196.1| signal recognition particle protein [Xylanimonas cellulosilytica DSM 15894] Length = 532 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 83/301 (27%), Positives = 137/301 (45%), Gaps = 27/301 (8%) Query: 21 FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 F S S +L ++ RL D E+ L+ +D+ V V ++ + + Sbjct: 2 FNSLSDRLTATFKNLRGRGRLSEADIDATVREIRRALLDADVAVPVVREFTSAIRERALG 61 Query: 77 KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VS Q+V+ V+E + ++L ++ P VI++ G+ G GKTT+ GKL Sbjct: 62 AEVSGALNPAQQVVKIVNEELVEILGGATRTLVL-AKVPPTVIMLAGLQGAGKTTLAGKL 120 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-----------DAAA 180 + + G +L A D R A+ QL + A+R G+ D Sbjct: 121 AHALKAQGHTPVLVAADLQRPNAVTQLSVVAERAGVPVFAPHPGNQGAVDLDVVIGDPVG 180 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 +A + A+ K+ DV+I+DTAGRL +++LM + + P VL V+DA Sbjct: 181 VARDGVAFARDKQHDVVIVDTAGRLGVDAVLMQQAADIRAAIN------PDEVLFVIDAM 234 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQ+A+ F TG++++K+DG ARGG + + P+ F GE + D E Sbjct: 235 IGQDAVATASAFLEGVDFTGVVLSKLDGDARGGAALSVAKVTGRPIMFASTGEKLTDFEV 294 Query: 301 F 301 F Sbjct: 295 F 295 >gi|297559205|ref|YP_003678179.1| signal recognition particle protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843653|gb|ADH65673.1| signal recognition particle protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 531 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 87/311 (27%), Positives = 151/311 (48%), Gaps = 25/311 (8%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +LT F+S K + DI ++ R E+ L+ +D+ + V ++ + + + Sbjct: 8 RLTSVFSSLRGKGRLSEEDINATAR-------EIRLALLEADVALPVVREFIARIKERAR 60 Query: 76 AKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 ++VS Q+V+ V+E + +L ++ + + P VI++ G+ G GKTT+ GK Sbjct: 61 GEEVSKALNPAQQVIKIVNEELVGILGGETRQIRF-AKNPPTVIMLAGLQGAGKTTLAGK 119 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187 L++ ++ +L A D R A+ QL++ +R E G+ D +A ++ + Sbjct: 120 LARWLAADRNTPLLVAADLQRPNAVTQLQVVGERAGTPVFAPEPGNGVGDPVQVARQSVE 179 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ +V+IIDTAGRL +S +M IR D P +L V+DA GQ+A+ Sbjct: 180 HARRNNHNVVIIDTAGRLGVDSEMMQQAAD-IR-----DAVNPDEILFVVDAMIGQDAVN 233 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F G + +TK+DG ARGG + I P+ F GE + D + F + Sbjct: 234 TAQAFLDGVGYDAVALTKLDGDARGGAALSIRHITGRPIMFASTGEKLEDFDLFHPDRMA 293 Query: 308 AVITGCLDYGE 318 + I LD G+ Sbjct: 294 SRI---LDMGD 301 >gi|268323505|emb|CBH37093.1| signal recognition 54 kDa protein [uncultured archaeon] Length = 443 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 89/301 (29%), Positives = 146/301 (48%), Gaps = 25/301 (8%) Query: 25 SLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRYAKDV- 79 S LKE I I ++R+D +EL + L+++D+ +++ +++ + + + + + Sbjct: 6 SSSLKESIRKIAKAKRIDKRTVDELVRDIQRALLQADVKISLVKELSDHIRERSLKEKML 65 Query: 80 -----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134 V +V+Y+ ELI+ + + P +P I++VG++G GKT+ KL++ Sbjct: 66 LNPREHVIKVVYE--ELINIIGKGVEVPL------KPQKIMMVGLHGAGKTSSCAKLARY 117 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 GLK + D +R A DQL+ D+ F + D L + K Sbjct: 118 FQKKGLKPAVICADVYRPGASDQLRQLCDKIGVPFYDGQ-PEDRNVLRIVTSGVNEFDKY 176 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D+ IIDTAGR ++ I + + K P VLDA+ GQ A Q + F Sbjct: 177 DIKIIDTAGRHALEPEMIDEIMDIEKATK------PEQRFIVLDASIGQQASVQAKAFDD 230 Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 G TG+I+TKMDGTA+GGG + V V F+G GE ++D E F + F + + G Sbjct: 231 AIGITGIIITKMDGTAKGGGALSAVAETDSGVAFIGTGETVDDFEKFESDGFISRLLGMG 290 Query: 315 D 315 D Sbjct: 291 D 291 >gi|332827673|gb|EGK00412.1| signal recognition particle protein [Dysgonomonas gadei ATCC BAA-286] Length = 439 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 97/311 (31%), Positives = 150/311 (48%), Gaps = 19/311 (6%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 ESLS +L + F LK + IT+I + L D VR L D +D+ A++ E Sbjct: 3 ESLS--NRLERSF--KILKGEGKITEINVAETLKD-VRRALLD----ADVNYKTAKQFTE 53 Query: 69 ELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PHVILVVGVNGVGKT 125 + K ++V + + + +++H L L D + + P VIL+ G+ G GKT Sbjct: 54 TVKEKALGQNVLTAVKPEQLMVKIVHDELAALMGGTATDINLKGSPAVILMSGLQGSGKT 113 Query: 126 TV-IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 T S G +L AGD +R AAI+QLKI + E + +A Sbjct: 114 TFSGKLAKLLKSKKGKNPLLVAGDVYRPAAIEQLKILGTQIEVPVYSEEDSKNPVQIAQN 173 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A K A+ D++IIDTAGRL + +M K I +K D P +L V+D+ TGQ+ Sbjct: 174 AIKFAKQNGNDLVIIDTAGRLAIDEEMM----KEITAVK--DAVKPDEILFVVDSMTGQD 227 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ + F+ G+++TK+DG RGG + I P+ F+G GE ++ L+ F + Sbjct: 228 AVNTAKEFNDRLNFDGVVLTKLDGDTRGGAALSIRSVVDKPIKFVGTGEKMDALDVFHPE 287 Query: 305 DFSAVITGCLD 315 + I G D Sbjct: 288 RMADRILGMGD 298 >gi|72161065|ref|YP_288722.1| signal recognition particle subunit FFH/SRP54 (srp54) [Thermobifida fusca YX] gi|71914797|gb|AAZ54699.1| signal recognition particle subunit FFH/SRP54 (srp54) [Thermobifida fusca YX] Length = 535 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 88/311 (28%), Positives = 150/311 (48%), Gaps = 25/311 (8%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 +LT F+S K + DI ++ R E+ L+ +D+ + V ++ + + + Sbjct: 8 RLTTVFSSLRGKGRLSEEDINTTAR-------EIRVALLEADVALPVVREFIARVKERAR 60 Query: 76 AKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +VS Q+V+ V E + ++L ++ + + P VI++ G+ G GKTT+ GK Sbjct: 61 GAEVSKALNPAQQVIKIVHEELIEVLGGETRTIRFAKTP-PTVIMLAGLQGAGKTTLAGK 119 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187 L+K ++D +L A D R A+ QL++ +R + E G+ D +A + Sbjct: 120 LAKWLADQRNTPLLVAADLQRPNAVTQLQVLGERANVAVYAPEPGNGVGDPVEVARSSID 179 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ +V+IIDTAGRL + +M IR D +P +L V+DA GQ+A+ Sbjct: 180 YARRNNYNVVIIDTAGRLGIDEEMMQQAAD-IR-----DAVSPDEILFVVDAMIGQDAVT 233 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 + F G + +TK+DG ARGG + I P+ F GE + D + F + Sbjct: 234 TAQAFLEGVGYDAVALTKLDGDARGGAALSIRHLTGRPIMFASTGEKLEDFDLFHPDRMA 293 Query: 308 AVITGCLDYGE 318 + I LD G+ Sbjct: 294 SRI---LDMGD 301 >gi|210633180|ref|ZP_03297716.1| hypothetical protein COLSTE_01629 [Collinsella stercoris DSM 13279] gi|210159220|gb|EEA90191.1| hypothetical protein COLSTE_01629 [Collinsella stercoris DSM 13279] Length = 494 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 105/208 (50%), Gaps = 7/208 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P+VI++VG+ G GKTT KL+ + G +LAA D +R AA DQL Sbjct: 104 SRIPNVIMLVGLQGSGKTTAAVKLAYMLKKQGKSPLLAACDVYRPAAADQLATLGGEIGV 163 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + G+ +A + ++A DV+I+DTAGRL + +M + + +K Sbjct: 164 PVFRGD-GAHPVEIARASIREAVDTMRDVVIVDTAGRLQIDEEMMQEAVDIKKAVK---- 218 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P VL V+DA TGQ+ + V F G+I++K+DG ARGGG + + P+ Sbjct: 219 --PDQVLMVVDAMTGQDIVNVVSTFAERTDFDGVIISKLDGDARGGGALSVREVTGKPIK 276 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ +GE + LE F + + I G D Sbjct: 277 FVSMGEKPDSLEVFSPERMAKRILGMGD 304 >gi|229815430|ref|ZP_04445762.1| hypothetical protein COLINT_02478 [Collinsella intestinalis DSM 13280] gi|229808963|gb|EEP44733.1| hypothetical protein COLINT_02478 [Collinsella intestinalis DSM 13280] Length = 493 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 105/208 (50%), Gaps = 7/208 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P+VI++VG+ G GKTT KL+ + G +LAA D +R AA DQL Sbjct: 99 SRIPNVIMLVGLQGSGKTTAAVKLAYMLKKQGKSPLLAACDVYRPAAADQLATLGGEIGV 158 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + G+ +A + ++A DV+I+DTAGRL + +M + + +K Sbjct: 159 PVFRGD-GAHPVDIARASIREAVDNMRDVVIVDTAGRLQIDEQMMQEAVDIKKAVK---- 213 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P VL V+DA TGQ+ + V F G+I++K+DG ARGGG + + P+ Sbjct: 214 --PDQVLMVVDAMTGQDIVNVVSTFAERTDFDGVIISKLDGDARGGGALSVREVTGKPIK 271 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ +GE + LE F + + I G D Sbjct: 272 FVSMGEKPDSLEVFNPERMAKRILGMGD 299 >gi|258542793|ref|YP_003188226.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter pasteurianus IFO 3283-01] gi|256633871|dbj|BAH99846.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter pasteurianus IFO 3283-01] gi|256636930|dbj|BAI02899.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter pasteurianus IFO 3283-03] gi|256639983|dbj|BAI05945.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter pasteurianus IFO 3283-07] gi|256643039|dbj|BAI08994.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter pasteurianus IFO 3283-22] gi|256646094|dbj|BAI12042.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter pasteurianus IFO 3283-26] gi|256649147|dbj|BAI15088.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter pasteurianus IFO 3283-32] gi|256652134|dbj|BAI18068.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655191|dbj|BAI21118.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter pasteurianus IFO 3283-12] Length = 467 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 113/215 (52%), Gaps = 8/215 (3%) Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKI 160 P N + S P +L+VG+ G GKTT GKL+ ++ + KV+LA+ DT R AA QL Sbjct: 93 PLNLN-STPPVPVLMVGLQGSGKTTTSGKLALRLKTRERKKVLLASLDTQRPAAQLQLAQ 151 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A++ + G +A A + + DV+I+DTAGRL + LM + + IR Sbjct: 152 LAEQVGVTSLPIVAGQTPVEIAKRALDTGRREGYDVVILDTAGRLSIDEALMDEV-RQIR 210 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 D P L V+DA TGQ+A+ + F+ G TG++MT+MDG +RGG + + Sbjct: 211 -----DVTHPAETLLVVDAMTGQDAVNTAKAFNEAVGVTGVVMTRMDGDSRGGAALSMRA 265 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ +G GE ++ L+ F + + I G D Sbjct: 266 ITGAPIKLIGTGEKLDGLDEFYPERVAGRILGLGD 300 >gi|269215483|ref|ZP_06159337.1| signal recognition particle protein [Slackia exigua ATCC 700122] gi|269130970|gb|EEZ62045.1| signal recognition particle protein [Slackia exigua ATCC 700122] Length = 472 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 100/208 (48%), Gaps = 7/208 (3%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 S P+VI++VG+ G GKTT KL+ + G +L A DT+R AA DQL+ Sbjct: 97 SRIPNVIMLVGLQGSGKTTAAAKLAYLLKSKGHSPLLVACDTYRPAAADQLETLGSEIGV 156 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + G+ +A E + A DV+I+DTAGRL + +MA + ++ Sbjct: 157 KVFRGD-GAHPVGIAQEGVRFAIDNLRDVVIVDTAGRLQVDEAMMAEAADIKAAVE---- 211 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P + V+DA TGQ + F G I++KMDG ARGGG + ++ P+ Sbjct: 212 --PDQIFMVVDAMTGQEIVNVASAFAERVDFDGAIVSKMDGDARGGGALSLMQVTGKPIK 269 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+ GE + LE F + I G D Sbjct: 270 FISAGEKPDSLEEFHPDRMAKRILGMGD 297 >gi|294952735|ref|XP_002787438.1| signal recognition particle receptor alpha subunit, putative [Perkinsus marinus ATCC 50983] gi|239902410|gb|EER19234.1| signal recognition particle receptor alpha subunit, putative [Perkinsus marinus ATCC 50983] Length = 882 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 82/299 (27%), Positives = 150/299 (50%), Gaps = 33/299 (11%) Query: 21 FASTSLKLKEGIT--DIISSRRLDDGVREELEDLLIRS---DIGVAVAQKIVEELLTKRY 75 FA+ + +LK IT ++++R L+ + E L+ ++ D+ A+A + L+ R Sbjct: 296 FATLTRQLK-NITGNQVLTNRDLEPVLATFCEQLMSKNVAMDVANAIADGVSSSLVGTRT 354 Query: 76 AKDVSVQRVLYD-VSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + SV + D +++ I ++L P L + + + I+ +GVNGVGK+T + Sbjct: 355 GQFTSVHTTVKDALTQSISRILTPKKSVDVLRAAMQAKANGQVYSIVFLGVNGVGKSTNL 414 Query: 129 GKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 K++ + GL+V++ A DTFR+ A++QL+ A + D G DAA +A + Sbjct: 415 SKVAYYLRKKGGLRVLICACDTFRAGAVEQLRTHARCLNVDLFEKGYGKDAAEIAKQGLY 474 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ DV++IDTAGR+ +N LM + +++ V + P +L V +A G +A+ Sbjct: 475 YAKHNAYDVVLIDTAGRMQDNEPLMKSLARLVAV------NNPDLILFVGEALVGYDAID 528 Query: 248 QVEMF------------HAVAGTTGLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGE 293 Q+ F + G G+++TK D + G + +V P+ F+G G+ Sbjct: 529 QLTKFDRALMDYSLSNKDSSNGIDGILLTKYDTVDDKVGAALSMVYITGEPIVFVGTGQ 587 >gi|189531921|ref|XP_697518.3| PREDICTED: signal recognition particle receptor subunit alpha isoform 2 [Danio rerio] Length = 650 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 82/295 (27%), Positives = 141/295 (47%), Gaps = 41/295 (13%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP- 102 V ++++D LI ++ +A ++ + + K K + + V V + + L+ + +P Sbjct: 353 VLDKMKDHLIAKNVAAEIASQLCDSVAKKLEGKVMGTFTTVASTVKQALQDSLVQILQPK 412 Query: 103 ---------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 +P VI GVNGVGK+T + K+S + + G V++AA DTFR+ Sbjct: 413 RRVDILRDVLEARSQRKPFVITFCGVNGVGKSTNLAKISYWLIENGFTVLIAACDTFRAG 472 Query: 154 AIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 A++QL+ R ++ G DAA +A EA A+ + DV++ID Sbjct: 473 AVEQLRTHQRRLNSLHPPEKHGGQPAVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLID 532 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT 259 TAGR+ +N+ LM + K+I V + P VL V +A G A+ Q+ F+ A+A + Sbjct: 533 TAGRMQDNAPLMTALAKLIAV------NTPDLVLFVGEALVGNEAVDQLVKFNRALADHS 586 Query: 260 ---------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 G+++TK D + G I + P+ F+G G+ +DL A+ Sbjct: 587 KSDKPRLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYSDLRSLNAR 641 >gi|323453480|gb|EGB09351.1| hypothetical protein AURANDRAFT_36905 [Aureococcus anophagefferens] Length = 577 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 39/289 (13%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTK---RYAK---------DVSV 81 +R L D E+L L+ ++ V VA I E L+ K R+A+ +V Sbjct: 287 TRELVDPAMEKLRTTLMEKNVAVEVADAITATVSESLVGKKVERFARAKTLVRDALKDAV 346 Query: 82 QRVLYD--VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139 RVL ++++ ++L +P P+ I+ VG+NGVGK+T + K++ + + G Sbjct: 347 ARVLTPKRSTDVLREVLAAKKRP------KGPYSIVFVGINGVGKSTSLSKVAYYLKEHG 400 Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199 + VM+ A DTFRS A++QL+ A + D +A + A+++ + ++I Sbjct: 401 VDVMITACDTFRSGAVEQLRSHAKCLDVELYEKGYLKDPGDVAKASLDHAKSRGKECVLI 460 Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT- 258 DTAGR+ NN LM + K+I V ++P VL V +A G + + Q+ MF+ Sbjct: 461 DTAGRMQNNERLMRELAKLISV------NSPDLVLFVGEALVGNDGIDQLNMFNKSLAQF 514 Query: 259 -------TGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 GL++TK D + G + + P+ F+GVG+ L+ Sbjct: 515 CPDGRQIDGLVLTKFDTIDDKVGATLSMTYKTGQPIMFIGVGQKYTHLK 563 >gi|116193091|ref|XP_001222358.1| hypothetical protein CHGG_06263 [Chaetomium globosum CBS 148.51] gi|88182176|gb|EAQ89644.1| hypothetical protein CHGG_06263 [Chaetomium globosum CBS 148.51] Length = 651 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 93/281 (33%), Positives = 141/281 (50%), Gaps = 31/281 (11%) Query: 40 RLDDGVREELEDLLIRSDIGV-AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98 RL +GV +EL + + + A QK +E LTK S+ +L ++ + Sbjct: 376 RLCEGVEKELLGVKTGNFESINARIQKAMEASLTKMLTPTSSLD-LLREIDAITAPSATS 434 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 L K RP+V+ +VGVNGVGK+T + K+ + KV++AAGDTFRS A++QL Sbjct: 435 LRK-------ARPYVMSIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVEQL 487 Query: 159 KIWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 + R + E G DAAA+A +A A + DV++IDTAGR HN+ Sbjct: 488 AVHV-RNLKELTAREGGQVELYQKGYGKDAAAVAKDAVAFAAQEGFDVVLIDTAGRRHND 546 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMT 264 LM+ + K + + P +L V +A G +++ Q F+A G+ G I++ Sbjct: 547 QRLMSSLEKFAKFAQ------PDKILMVGEALVGTDSVAQARNFNAAFGSGRSLDGFIIS 600 Query: 265 KMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 K D G L+ IV +PV F+GVG+ +DL F K Sbjct: 601 KCDTVGDMVGTLVSIVHATNVPVLFVGVGQHYSDLRNFSVK 641 >gi|326676235|ref|XP_003200533.1| PREDICTED: signal recognition particle receptor subunit alpha isoform 1 [Danio rerio] Length = 622 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 82/295 (27%), Positives = 141/295 (47%), Gaps = 41/295 (13%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP- 102 V ++++D LI ++ +A ++ + + K K + + V V + + L+ + +P Sbjct: 325 VLDKMKDHLIAKNVAAEIASQLCDSVAKKLEGKVMGTFTTVASTVKQALQDSLVQILQPK 384 Query: 103 ---------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 +P VI GVNGVGK+T + K+S + + G V++AA DTFR+ Sbjct: 385 RRVDILRDVLEARSQRKPFVITFCGVNGVGKSTNLAKISYWLIENGFTVLIAACDTFRAG 444 Query: 154 AIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 A++QL+ R ++ G DAA +A EA A+ + DV++ID Sbjct: 445 AVEQLRTHQRRLNSLHPPEKHGGQPAVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLID 504 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT 259 TAGR+ +N+ LM + K+I V + P VL V +A G A+ Q+ F+ A+A + Sbjct: 505 TAGRMQDNAPLMTALAKLIAV------NTPDLVLFVGEALVGNEAVDQLVKFNRALADHS 558 Query: 260 ---------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 G+++TK D + G I + P+ F+G G+ +DL A+ Sbjct: 559 KSDKPRLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYSDLRSLNAR 613 >gi|39933322|ref|NP_945598.1| signal recognition particle protein [Rhodopseudomonas palustris CGA009] gi|39652947|emb|CAE25689.1| signal recognition particle protein [Rhodopseudomonas palustris CGA009] Length = 516 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/281 (27%), Positives = 136/281 (48%), Gaps = 17/281 (6%) Query: 43 DGVREELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKML 96 D E+ L+ +D+ + V +++ E+ + K V +++ + ELI + Sbjct: 28 DAAMREIRRALLEADVALEVVRSFTERVREQAVGATVVKSVKPGQMVVKIVNDELIATLG 87 Query: 97 MPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAA 154 S+ + D + P V I++VG+ G GKTT KL+++M++ KV++A+ D +R AA Sbjct: 88 ---SEVQSIDLNAVPPVPIMMVGLQGSGKTTTTAKLARRMTERDKRKVLMASLDVYRPAA 144 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 ++QL + D + G +A A + + DV+++DTAGR + +M Sbjct: 145 MEQLAVLGRDLQIDTLPIVAGQQPPDIARRAMEAGKLGGYDVVLLDTAGRTTLDEDMMTE 204 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 ++ PH VL V D+ TGQ+A+ F G TG+++T++DG RGG Sbjct: 205 AAEIKAAAN------PHEVLLVADSLTGQDAVNLARAFDQRVGLTGIVLTRIDGDGRGGA 258 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ +G GE + LE F ++ I G D Sbjct: 259 ALSMRAVTGKPIKLMGTGEKTDALEDFHPSRIASRILGMGD 299 >gi|225028000|ref|ZP_03717192.1| hypothetical protein EUBHAL_02269 [Eubacterium hallii DSM 3353] gi|224954714|gb|EEG35923.1| hypothetical protein EUBHAL_02269 [Eubacterium hallii DSM 3353] Length = 451 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 81/304 (26%), Positives = 147/304 (48%), Gaps = 15/304 (4%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S + KL+ ++ S RL + V+E ++++ L+ +D+ V + V+ + + Sbjct: 3 FESLTDKLQNVFKNLRSKGRLTEADVKEAMKEVKRALLEADVNFRVVKSFVKTVTDRAIG 62 Query: 77 KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +DV Q V+ V E + ++ + V L+ G+ G GKTT K+ Sbjct: 63 QDVLTGLNPGQMVIKIVKEEMESLMGSEMTELVIKQGNEITVFLMAGLQGAGKTTTCAKI 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + ++ G K +L A D +R AAI QL++ + + +A + + A+ Sbjct: 123 AGQLKKKGKKPLLVACDVYRPAAIKQLEVNGAKQGVPVFTMGDKQNPVDIAKASIEHAKE 182 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 +++I+DTAGRLH + +M + + + + +VL V+DA TGQ+A+ + Sbjct: 183 NDNNIVILDTAGRLHVDESMMEELQNI-----KANVDVTQTVL-VVDAMTGQDAVNVAKT 236 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F G G+I+TK+DG RGG + I P+ ++G+GE + DL+ F ++ I Sbjct: 237 FEEKVGIDGVILTKLDGDTRGGAALSIRAVTGKPILYVGMGEKLEDLQQFYPDRMTSRIL 296 Query: 312 GCLD 315 G D Sbjct: 297 GMGD 300 >gi|329114608|ref|ZP_08243367.1| Signal recognition particle protein [Acetobacter pomorum DM001] gi|326696088|gb|EGE47770.1| Signal recognition particle protein [Acetobacter pomorum DM001] Length = 481 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 113/215 (52%), Gaps = 8/215 (3%) Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKI 160 P N + S P +L+VG+ G GKTT GKL+ ++ + KV+LA+ DT R AA QL Sbjct: 107 PLNLN-STPPVPVLMVGLQGSGKTTTSGKLALRLKTRERKKVLLASLDTQRPAAQLQLAQ 165 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A++ + G +A A + + DV+I+DTAGRL + LM + + IR Sbjct: 166 LAEQVGVTSLPIIAGQTPVEIAKRALDTGRLEGYDVVILDTAGRLSIDEALMDEV-RQIR 224 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 D P L V+DA TGQ+A+ + F+ G TG++MT+MDG +RGG + + Sbjct: 225 -----DVTHPAETLLVVDAMTGQDAVNTAKAFNEAVGVTGVVMTRMDGDSRGGAALSMRA 279 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ +G GE ++ L+ F + + I G D Sbjct: 280 ITGAPIKLIGTGEKLDGLDEFYPERVAGRILGLGD 314 >gi|156186088|gb|ABU55362.1| cell division ABC transporter periplasmic substrate-binding protein FtsY [Callosobruchus chinensis] gi|156186090|gb|ABU55363.1| cell division ABC transporter periplasmic substrate-binding protein FtsY [Callosobruchus chinensis] Length = 102 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 52/102 (50%), Positives = 66/102 (64%) Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+ K + G VML A DTFR+AA QL IWA+ + V E GSD+ ++A Sbjct: 1 GKTTTIGKLAYKYKEMGKSVMLVACDTFRAAASKQLNIWAENSDCLIVTGEHGSDSPSVA 60 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 Y A QA VDV++IDTAGRL NN LM + K+ R +K+ Sbjct: 61 YRAVSQAIKDNVDVVLIDTAGRLQNNVNLMEKLSKIYRTIKK 102 >gi|118575617|ref|YP_875360.1| signal recognition particle GTPase [Cenarchaeum symbiosum A] gi|118194138|gb|ABK77056.1| signal recognition particle GTPase [Cenarchaeum symbiosum A] Length = 397 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 78/269 (28%), Positives = 135/269 (50%), Gaps = 20/269 (7%) Query: 51 DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110 D+ + +I + ++ V E+ ++ + ++LYD + K+L S +FS + Sbjct: 2 DVRLVKEIAGRLEERCVGEVPPPGLSRKDHIVKILYDE---LAKLLGGES-----EFSFK 53 Query: 111 P---HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 P + +L++G+ G GK+T+ KL+K ++ G K + DT+R A+ QL+ +R++ Sbjct: 54 PGRTNKVLMLGIQGSGKSTITAKLAKLLTRQGYKTGVVGADTYRPGALVQLRTMCERSNV 113 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + E SDA A+ + DV+++DTAGR H G+++ +KR+ Sbjct: 114 EVYGEEGESDAPAVVRRGLRHF-GDSCDVILVDTAGR-HKEE------GELLDEMKRIGK 165 Query: 228 HA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 A P L V+D T G Q E FH G+++TK+D +A+GGG I V Sbjct: 166 AAEPDLALLVIDGTIGNRCYAQAEAFHKTVPVGGIVVTKLDSSAKGGGAIAASAATGSSV 225 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ++G GE I+D+E F + F + G D Sbjct: 226 MYIGTGERIDDIEQFSSTRFVGRLLGMGD 254 >gi|262277884|ref|ZP_06055677.1| signal recognition particle protein [alpha proteobacterium HIMB114] gi|262224987|gb|EEY75446.1| signal recognition particle protein [alpha proteobacterium HIMB114] Length = 453 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 146/291 (50%), Gaps = 24/291 (8%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSE 90 + ++ D+G+R+ + L+ SD+ ++V +K +E++ K ++V S+ Q ++ V++ Sbjct: 22 LDEKQADEGLRK-IRQALLESDVALSVTKKFIEDVKPKIIGQEVLKSITPGQMIIKIVND 80 Query: 91 LIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLS----KKMSDAGLKVMLA 145 + +L S+ + + + P V ILVVG+ G GKTT KL+ KK++ KV++ Sbjct: 81 ELINVLG--SEKSDLNLENVPPVKILVVGLQGSGKTTSTAKLAHFLQKKLTK---KVLMT 135 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 + D +R AA QL++ + + G ++ A DV+I DTAGR Sbjct: 136 SLDIYRPAAQQQLQVLGNDNDIKTLPIIEGQLPVEISKRALNAVSLSGEDVVIFDTAGRT 195 Query: 206 HNNSILMAGIGKMIRVLKRLDPH-APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 + +M+ LK+L+ PH ++ V D+ TGQ+A+ + F + +I+T Sbjct: 196 QIDQ-------QMMMELKQLENEIRPHEIILVADSLTGQDAVNIAQEFQKTVNLSSIILT 248 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ++DG +GG + + P+ FL GE I+ LE F + I G D Sbjct: 249 RIDGDGKGGAALSMKAVTGCPIKFLATGEKIDQLETFHPDRIANRILGMGD 299 >gi|328766891|gb|EGF76943.1| hypothetical protein BATDEDRAFT_14566 [Batrachochytrium dendrobatidis JAM81] Length = 634 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 104/207 (50%), Gaps = 24/207 (11%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-- 167 RP+ + VGVNGVGK+T + K+ + +V++AA DTFRS A++QL++ A Sbjct: 420 RPYTFVFVGVNGVGKSTNLSKICFWLLQNKKRVLIAACDTFRSGAVEQLRVHVKNLKALE 479 Query: 168 -----DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 D G D AA+A EA A ++ D+++IDTAGR+ +N LM + K+I Sbjct: 480 KGAVVDLFDRGYGKDPAAIAKEAIAYATLERYDIVLIDTAGRMQDNEPLMRALAKLIST- 538 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQV----EMFHAVAGT------TGLIMTKMDG-TAR 271 + P +L V +A G A+ Q+ + F +G G+I+TK D + Sbjct: 539 -----NNPDKILFVGEALVGNGAVDQLTKFNQAFRDFSGMREPRQIDGMILTKFDTIDDK 593 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDL 298 G + + P+ F+G G+ DL Sbjct: 594 VGAALSMTYATGKPILFVGTGQTYTDL 620 >gi|328857956|gb|EGG07070.1| hypothetical protein MELLADRAFT_35731 [Melampsora larici-populina 98AG31] Length = 601 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 84/280 (30%), Positives = 146/280 (52%), Gaps = 35/280 (12%) Query: 47 EELEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYD-VSELIHKMLMP--- 98 ++++ L++ ++ +VA++I + ELL K+ S++ ++ D +S + ++L P Sbjct: 314 QQMQTQLLKKNVARSVAEEICDKLGVELLGKKR-DGTSLRELVRDALSTSLRQILTPRTS 372 Query: 99 --LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 L S +P+VI VGVNGVGK+T + K++ + L+V++AA DTFRS A++ Sbjct: 373 VDLLMEVRRRQSGKPYVITFVGVNGVGKSTNLAKVAFWLLQNRLRVLIAACDTFRSGAVE 432 Query: 157 QLKIWADRTSA--------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 QL+ S+ + G DAA +A A A+ DV++IDTAGR+ +N Sbjct: 433 QLRTHVRNLSSIDQPNGMVELFEKGYGKDAAGIAKAAIAHAETNGFDVVLIDTAGRMQDN 492 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA----VAGTT----- 259 LM +GK+I V + P V+ V +A G A+ Q++ F+ +G Sbjct: 493 EPLMRALGKLISV------NEPDKVIFVGEALVGNEAVDQLQGFNTSIQKFSGPISRSLD 546 Query: 260 GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 G+I+TK D + G + + + P++F+G G+ DL Sbjct: 547 GMILTKFDTIDDQVGAAVSMTFVTRQPIWFVGTGQTYTDL 586 >gi|242070027|ref|XP_002450290.1| hypothetical protein SORBIDRAFT_05g003290 [Sorghum bicolor] gi|241936133|gb|EES09278.1| hypothetical protein SORBIDRAFT_05g003290 [Sorghum bicolor] Length = 539 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 6/177 (3%) Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 G ML A D +R AAIDQL I + + + A ++A++K +D ++ Sbjct: 188 GKSCMLVAADVYRPAAIDQLTILGKQVGVPVYSEGTEAKPTQITKNAMEEAKSKNIDAIV 247 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +DTAGRL + +M + ++ + + P VL V+DA TGQ A V F+ G Sbjct: 248 VDTAGRLQIDKSMMDELKEVKKAVN------PTEVLLVVDAMTGQEAAALVTTFNIEIGI 301 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TG I+TK+DG +RGG + + P+ F+G GE + DLE F + + G D Sbjct: 302 TGAILTKLDGDSRGGAALSVKEVSGKPIKFVGRGERLEDLELFYPDRMAQRVLGMGD 358 >gi|157134401|ref|XP_001663285.1| signal recognition particle 54 kda protein [Aedes aegypti] gi|108870487|gb|EAT34712.1| signal recognition particle 54 kda protein [Aedes aegypti] Length = 401 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 94/195 (48%), Gaps = 6/195 (3%) Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT KL+ K L DTFR+ A DQ+K A + F S D Sbjct: 8 GSGKTTTCTKLAYHYQKKNWKSCLVCADTFRAGAYDQIKQNATKARIPFYGSYTEVDPVV 67 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 +A + + + + +I+DT+GR L +M+ V + P +++ V+DAT Sbjct: 68 IAQDGVDMFKKEGFEFIIVDTSGRHKQEESLFE---EMLAVATAV---KPDNIIFVMDAT 121 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQ Q + F +I+TK+DG A+GGG + V P+ F+G GE I+DLEP Sbjct: 122 IGQACEAQAKAFKEKVDIGSVIITKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDLEP 181 Query: 301 FVAKDFSAVITGCLD 315 F K F + + G D Sbjct: 182 FKTKPFISKLLGMGD 196 >gi|329766980|ref|ZP_08258508.1| signal recognition particle protein [Gemella haemolysans M341] gi|328837705|gb|EGF87330.1| signal recognition particle protein [Gemella haemolysans M341] Length = 450 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 85/305 (27%), Positives = 148/305 (48%), Gaps = 20/305 (6%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L+ I + ++ + V+E + ++ L+ +D+ V ++ V+++ + Sbjct: 3 FENLSQRLQNTIAKLTGKGKVSEADVKEMMREVRLALLEADVNFKVVKEFVKKISERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V Q+++ V+E + ++L + N + +++VG+ G GKTT GKL Sbjct: 63 TEVMKSLTPAQQIVKIVNEELVELLGGSNVELNQ--GGKITTVMMVGLQGAGKTTTAGKL 120 Query: 132 S-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 + K K +L A D +R AA+ QLK + D + D + + A+ Sbjct: 121 ALKVKKTMKKKPLLIAADVYRPAAVQQLKTLGKQL--DIEVFYVDKDPVDIVKDGLAFAK 178 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + +IIDTAGRLH + +LM + K I+ P +L V+DA GQ A+ Sbjct: 179 ENYFNYVIIDTAGRLHIDELLMDEL-KDIKA-----ATTPDEILLVIDAMIGQEAVNIAS 232 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F TGL++TK+DG RGG + I P+ +G+GE +NDLE F + ++ I Sbjct: 233 SFDEQLDITGLVLTKLDGDTRGGAALSIKSITGKPIKLVGMGEKMNDLEIFHPERMASRI 292 Query: 311 TGCLD 315 G D Sbjct: 293 LGMGD 297 >gi|240047246|ref|YP_002960634.1| Signal recognition particle protein [Mycoplasma conjunctivae HRC/581] gi|239984818|emb|CAT04805.1| Signal recognition particle protein [Mycoplasma conjunctivae] Length = 441 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 103/204 (50%), Gaps = 10/204 (4%) Query: 114 ILVVGVNGVGKTTVIGKLS--KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 I++VG+ G GKTT KLS K K +L A D +R AAI+QLK + + Sbjct: 102 IILVGLQGSGKTTTAAKLSLFAKNKKHSQKPLLVACDIYRPAAIEQLKQLGKQIGIEVFS 161 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 + + +A A + AQ D++I DTAGRL + LM + + +++ P Sbjct: 162 QD--ATPQEIAKNAIQYAQDNDFDLIIFDTAGRLAIDEPLMDELVDLKKIIH------PD 213 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 +L V DA +GQ+ + ++F+ G I+TK+D ARGG + I KIP+ F+G Sbjct: 214 QILFVTDALSGQDVINVAQVFNDRIKLNGAIITKLDSDARGGSALSITHLLKIPINFIGS 273 Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315 GE I+ LE F + I G D Sbjct: 274 GEKISSLEIFHPNRIADRILGMGD 297 >gi|261416795|ref|YP_003250478.1| signal recognition particle protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373251|gb|ACX75996.1| signal recognition particle protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302328200|gb|ADL27401.1| signal recognition particle protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 454 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 102/206 (49%), Gaps = 8/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P I++VG+ G GKTT GK++ M S K +L A D +R AAI QL++ Sbjct: 100 PVGIMMVGLQGSGKTTFAGKIALWMRSKKKRKPLLVAADVYRPAAIKQLQVLGKSIGVP- 158 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V E + + ++ A+ D++I DTAGRL + LM + K D Sbjct: 159 VYDEGQGNPVEIIKHGYQYAKDNGFDLVIYDTAGRLQIDEELMQ------ELEKARDAVH 212 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P +L V DA GQ A+ E F TG+ ++KMDG RGG + I +P+ F+ Sbjct: 213 PDEILFVADAMIGQEAVNVAETFWNRLNFTGVCLSKMDGDTRGGAALSIKKMTGVPICFI 272 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 GVGE +N+++ F ++ I G D Sbjct: 273 GVGEKLNEIDLFHPDRMASRILGMGD 298 >gi|192288677|ref|YP_001989282.1| signal recognition particle protein [Rhodopseudomonas palustris TIE-1] gi|192282426|gb|ACE98806.1| signal recognition particle protein [Rhodopseudomonas palustris TIE-1] Length = 516 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 78/281 (27%), Positives = 137/281 (48%), Gaps = 17/281 (6%) Query: 43 DGVREELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKML 96 D E+ L+ +D+ + V +++ E+ + K V +++ + ELI + Sbjct: 28 DAAMREIRRALLEADVALEVVRSFTERVREQAVGATVVKSVKPGQMVVKIVNDELIATLG 87 Query: 97 MPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAA 154 S+ + D + P V I++VG+ G GKTT KL+++M++ KV++A+ D +R AA Sbjct: 88 ---SEVQSIDLNAVPPVPIMMVGLQGSGKTTTTAKLARRMTERDKRKVLMASLDVYRPAA 144 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 ++QL + D + G +A A + + DV+++DTAGR + +MA Sbjct: 145 MEQLAVLGRDLQIDTLPIVAGQQPPDIARRAMEAGKLGGYDVVLLDTAGRTTLDEDMMAE 204 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 ++ PH VL V D+ TGQ+A+ F G TG+++T++DG RGG Sbjct: 205 AAEIKAAAN------PHEVLLVADSLTGQDAVNLARAFDQRVGLTGIVLTRIDGDGRGGA 258 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ +G GE + LE F ++ I G D Sbjct: 259 ALSMRAVTGKPIKLMGTGEKTDALEDFHPSRIASRILGMGD 299 >gi|71891959|ref|YP_277689.1| 4.5S-RNP protein [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796065|gb|AAZ40816.1| 4.5S-RNP protein [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 453 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 90/310 (29%), Positives = 148/310 (47%), Gaps = 26/310 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S K+ + I +I+ S RL ++ ++E L + L+ D+ + V V + Sbjct: 2 FKKLSNKISQSIRNIVGSGRLTENNIKETLNMVKIALLEGDVALPVVHGFVNTVKEGIIG 61 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 D++ + L E I M L S N + + P +IL+VG G GKTT G Sbjct: 62 SDIN--KHLTPGQEFIKIMHASLVKIMGEGSNDLNLN-TQTPSIILIVGAQGSGKTTTTG 118 Query: 130 KLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSE---IGSDAAALAYEA 185 KL+K + K + +A+ D +R A + QLK S D + E + + + A Sbjct: 119 KLAKFLKIKKNKKILVASTDVYRPAGVQQLKSLIK--SEDIIFFEDCNVRNKPIDILKAA 176 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 +++ DVL+IDTAG L + L++ + +M + P L ++D+ GQ A Sbjct: 177 SIVSRSLSYDVLLIDTAGCLETDDSLLSELAEMHSCVN------PIETLFIVDSMIGQVA 230 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + + +F+ TG+I+TK+DG +RGG + I P+ F+G GE I+ LEPF + Sbjct: 231 INSINVFNKTLPLTGIILTKLDGDSRGGVALSIKYLTGKPIKFIGTGEKIDALEPFNSYR 290 Query: 306 FSAVITGCLD 315 + I G D Sbjct: 291 IAGRILGMGD 300 >gi|296126133|ref|YP_003633385.1| GTP-binding signal recognition particle SRP54 G- domain protein [Brachyspira murdochii DSM 12563] gi|296017949|gb|ADG71186.1| GTP-binding signal recognition particle SRP54 G- domain protein [Brachyspira murdochii DSM 12563] Length = 451 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 74/272 (27%), Positives = 130/272 (47%), Gaps = 12/272 (4%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPF 103 +++ L+ +D+ + A K +EE + K+ + + DV + + M+ Sbjct: 34 IKEALLSADVSLEAANKFLEEATNRAIGKEKIEGVEPANQFIADVHDTLVNMIGEGESGL 93 Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 + + + L+ G+ G GKTT KL+K D +VM+ D R AA++QL + A Sbjct: 94 KLEPVEKTTITLLFGLQGSGKTTTTAKLAKYYKDK-RRVMMVGLDVHRPAAMEQLAVLAR 152 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + A + +A A+ ++ +++++DTAGRL + +M ++ RV+ Sbjct: 153 EVGVPYHIDTKEKKAYKILKKALAIAKKEQYNMILVDTAGRLEIDENMMM---ELRRVVN 209 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 D L V+D+T GQ+ + F + G G+I+TK D RGG + + Sbjct: 210 SADVTEK---LLVVDSTAGQSVYDVAKSFQSNIGINGVILTKFDSGVRGGAALSLKYATG 266 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 PV F+GVGE I+D++ F AK + I G D Sbjct: 267 SPVKFVGVGEHIDDIDVFDAKRVAGQILGMGD 298 >gi|24641198|ref|NP_524887.2| GTP-binding protein [Drosophila melanogaster] gi|47117334|sp|Q9U5L1|SRPR_DROME RecName: Full=Signal recognition particle receptor subunit alpha homolog; Short=DP-alpha; Short=Docking protein alpha; Short=SR-alpha; AltName: Full=GTP-binding protein gi|22832080|gb|AAF48002.2| GTP-binding protein [Drosophila melanogaster] gi|201065707|gb|ACH92263.1| FI05231p [Drosophila melanogaster] Length = 614 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 139/288 (48%), Gaps = 41/288 (14%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP--- 98 E++ D LI ++ +A K+ + + K D +V ++E + ++L P Sbjct: 320 EKMRDHLISKNVASEIAAKLCDSVAASLDGKQMGTFDSIASQVKEALTESLVRILSPKRR 379 Query: 99 ---LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 + + RP+ I+ GVNGVGK+T + K+ + + V++AA DTFR+ A+ Sbjct: 380 IDIIRDALESKRNGRPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAV 439 Query: 156 DQLKIWADRTSADFVCSE-------------IGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 +QL+ +A ++ G DAA +A EA K A +VDV+++DTA Sbjct: 440 EQLRTHTRHLNALHPAAKHDGRNMVQLYEKGYGKDAAGIAMEAIKFAHDTRVDVVLVDTA 499 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259 GR+ +N LM + K+I+V + P VL V +A G A+ Q+ F+ ++A + Sbjct: 500 GRMQDNEPLMRSLSKLIKV------NNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSN 553 Query: 260 -------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 G+++TK D + G I + P+ F+G G+ DL+ Sbjct: 554 ENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLK 601 >gi|296116586|ref|ZP_06835196.1| signal recognition particle protein [Gluconacetobacter hansenii ATCC 23769] gi|295976798|gb|EFG83566.1| signal recognition particle protein [Gluconacetobacter hansenii ATCC 23769] Length = 453 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 114/215 (53%), Gaps = 8/215 (3%) Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKI 160 P N + + P IL+VG+ G GKTT GK++ +++ KV+LA+ DT R AA QL+ Sbjct: 82 PLNLNAAA-PVPILMVGLQGSGKTTTSGKIALRLATRERRKVLLASLDTQRPAAQLQLQQ 140 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A+R + G +A A + + + D++I+DTAGRL + LM + + IR Sbjct: 141 LAERAGVASLPIIAGQSPVEIARRAMEVGRREGYDIVILDTAGRLSIDEALMDEV-RAIR 199 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 + P L V+DA TGQ+A+ + F+ G TG++MT+MDG ARGG + + Sbjct: 200 AETQ-----PAETLLVVDAMTGQDAVNTAKAFNEAVGVTGVVMTRMDGDARGGAALSMRA 254 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ G GE ++ LE F + + I G D Sbjct: 255 ITGAPIKLTGSGEKLDALEEFHPERVAGRILGLGD 289 >gi|31544492|ref|NP_853070.1| signal recognition particle protein Ffh [Mycoplasma gallisepticum str. R(low)] gi|31541337|gb|AAP56638.1| signal recognition particle protein Ffh [Mycoplasma gallisepticum str. R(low)] gi|284930548|gb|ADC30487.1| signal recognition particle protein Ffh [Mycoplasma gallisepticum str. R(high)] Length = 451 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 8/203 (3%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCS 172 I++VG+ G GKTT + KL+K ++ K L G D +R AAIDQL A++ + F + Sbjct: 109 IMLVGLQGSGKTTTVAKLAKFLNKQKQKNSLLVGLDVYRPAAIDQLNTLAEQINMPF-YN 167 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 E SD A + + A+ K D++I DTAGRL N LM +++ + +DP Sbjct: 168 EGLSDPVKTAKNSIEIAKEKNCDLIIYDTAGRLQTNVELM---NELVNIRNTVDPD---E 221 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 ++ V+D +GQ + F+ +G+I+TK+D AR G + + +P+ F G Sbjct: 222 IILVVDGLSGQEIINIATEFNNYLKLSGIIITKLDSDARAGAALSLRSILNVPIKFTTSG 281 Query: 293 EGINDLEPFVAKDFSAVITGCLD 315 E ++ +E F + + I G D Sbjct: 282 EKLDAIELFYPERIADRILGFGD 304 >gi|115951464|ref|XP_001188635.1| PREDICTED: similar to signal recognition particle receptor alpha subunit (sr-alpha), partial [Strongylocentrotus purpuratus] Length = 584 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 80/271 (29%), Positives = 132/271 (48%), Gaps = 44/271 (16%) Query: 35 IISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVS 89 ++ S+ LD V +++ D L ++ +A+K+ E + TK K + + RV V Sbjct: 315 LVGSKTLDKETMAPVLDKMRDHLTAKNVARDIAEKLCESVATKLEGKVLGTFGRVTSVVK 374 Query: 90 ELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139 E + + L+ + P ++P I GVNGVGK+T + K+ + + G Sbjct: 375 ETLQESLVQILSPRRRVDILRDALEAKARNKPFSITFCGVNGVGKSTNLAKICFWLIENG 434 Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAF 186 +V++AA DTFR+ A++QL+ +A G DAA +A EA Sbjct: 435 FRVLIAACDTFRAGAVEQLRTHERHLNALHPAEKHGGHAPVQLYEKGYGKDAAGIAMEAI 494 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 K A+ + DV++IDTAGR+ +N LM + K+I+V + P VL V +A G A+ Sbjct: 495 KFARDYRFDVVLIDTAGRMQDNEPLMRALSKLIKV------NRPDLVLFVGEALVGNEAV 548 Query: 247 RQVEMF-HAVAGTT---------GLIMTKMD 267 Q+ F HA+A + G+++TK D Sbjct: 549 DQLTKFNHALADFSDSDDPRLIDGIVLTKFD 579 >gi|58038679|ref|YP_190643.1| Signal recognition particle protein [Gluconobacter oxydans 621H] gi|58001093|gb|AAW59987.1| Signal recognition particle protein [Gluconobacter oxydans 621H] Length = 475 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 83/277 (29%), Positives = 140/277 (50%), Gaps = 23/277 (8%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSELIHKMLMPLSKPFN 104 ++ +D+ + V + V ++ + ++V +V +++ D LI + + P N Sbjct: 38 MLEADVALPVVRDFVNKVRERSVGQEVLESVSPGQAVAKIVNDA--LIDALGGAGAVPLN 95 Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWAD 163 ++ P +L+VG+ G GKTT GK++ ++S KV+LA+ D R AA QL+ A+ Sbjct: 96 LS-ANPPVPVLMVGLQGSGKTTTSGKIALRLSGRENKKVLLASLDVQRPAAQLQLQQLAE 154 Query: 164 RTSADFVCSEI-----GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 R +A + G +A A + + + DV+I+DTAGRL + LM + + Sbjct: 155 RVNAKTGRVQALPIISGQSPVQIAKRALETGRLEGYDVVILDTAGRLSIDEALMDEV-RE 213 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 IR L + P L V+DA TGQ+A+ + F+ G TG++M++MDG ARGG + + Sbjct: 214 IRTLTK-----PAETLLVVDAMTGQDAVNTAKAFNEAVGITGVVMSRMDGDARGGAALSM 268 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ G GE + LE F + + I G D Sbjct: 269 KAITGAPIKLTGSGENLEALEEFHPERVAGRILGLGD 305 >gi|317495250|ref|ZP_07953620.1| signal recognition particle protein [Gemella moribillum M424] gi|316914672|gb|EFV36148.1| signal recognition particle protein [Gemella moribillum M424] Length = 450 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 84/305 (27%), Positives = 146/305 (47%), Gaps = 20/305 (6%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L+ I + ++ + V+E + ++ L+ +D+ V + V+++ + Sbjct: 3 FENLSERLQNTIAKLTGKGKVSEADVKEMMREVRLALLEADVNFKVVKDFVKKISERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V Q+++ V+E + ++L + N + ++VG+ G GKTT GKL Sbjct: 63 TEVMKSLTPAQQIVKIVNEELVELLGGTNVELNQ--GGKITTTMMVGLQGAGKTTTAGKL 120 Query: 132 S-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 + K K +L A D +R AA+ QLK + D + D + E + A+ Sbjct: 121 ALKVKKTMKKKPLLIAADVYRPAAVQQLKTLGKQL--DIEVFYVDKDPVDIVKEGLEFAR 178 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + +IIDTAGRLH + +LM + + + P +L V+DA GQ A+ Sbjct: 179 EHYYNYVIIDTAGRLHIDELLMDELKDIKSAVN------PDEILLVVDAMIGQEAVNIAT 232 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F TGL++TK+DG RGG + I P+ +G+GE +NDLE F + ++ I Sbjct: 233 SFDEQLDITGLVLTKLDGDTRGGAALSIKSITGKPIKLVGMGEKMNDLELFHPERMASRI 292 Query: 311 TGCLD 315 G D Sbjct: 293 LGMGD 297 >gi|313623288|gb|EFR93529.1| signal recognition particle protein [Listeria innocua FSL J1-023] Length = 415 Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 108/211 (51%), Gaps = 17/211 (8%) Query: 111 PHVILVVGVNGVGKTTV----IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P VI++VG+ G GKTT L KK + K +L A D +R AAI QL+ + Sbjct: 66 PTVIMMVGLQGAGKTTTSXXXANLLRKKYNR---KPLLVAADIYRPAAIKQLETLGKQL- 121 Query: 167 ADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 D +G + +A +A +A+ + +D +IIDTAGRLH + LM + ++ + Sbjct: 122 -DMPVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEI--- 177 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P +L V+D+ TGQ+A+ + F+ TG+++TK+DG RGG + I Sbjct: 178 ---ATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGK 234 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+ GE + +E F ++ I G D Sbjct: 235 PIKFVATGEKMEAIETFHPDRMASRILGMGD 265 >gi|159467803|ref|XP_001692081.1| alpha subunit of the SRP receptor [Chlamydomonas reinhardtii] gi|158278808|gb|EDP04571.1| alpha subunit of the SRP receptor [Chlamydomonas reinhardtii] Length = 687 Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 113/232 (48%), Gaps = 43/232 (18%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P+VI+ GVNGVGK+T + K++ + +KVM+AA DTFR+ A++QLK R Sbjct: 454 KPYVIVFCGVNGVGKSTNLAKIAYWLGSHNIKVMIAACDTFRAGAVEQLKTHCARLRVPL 513 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 D A +AYEA +QA+ V V+++DTAGR+ +N LM + +I + + Sbjct: 514 YERGYEKDPAKVAYEAVRQAEKDGVHVVLVDTAGRMQDNQPLMRALSTLISL------NN 567 Query: 230 PHSVLQVLDATTGQNALRQVEMFHA----VAGTT-------------------------- 259 P+ VL V +A G +A+ Q+ F+ +A TT Sbjct: 568 PNLVLFVGEALVGNDAVDQLTKFNKSLSDLAPTTAGAGGPGEGTGAVGRGQADGSALTRR 627 Query: 260 ------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 G+++TK D + G + +V T PV F+G G+ DL+ K Sbjct: 628 HGGVIDGIVLTKFDTIDEKVGAALSMVYTSGAPVMFVGCGQTYVDLKKLNVK 679 >gi|302753916|ref|XP_002960382.1| hypothetical protein SELMODRAFT_75660 [Selaginella moellendorffii] gi|300171321|gb|EFJ37921.1| hypothetical protein SELMODRAFT_75660 [Selaginella moellendorffii] Length = 633 Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 85/296 (28%), Positives = 133/296 (44%), Gaps = 52/296 (17%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPF---- 103 L+D L+ ++ +A+KI E + K + + RV V E + L+ + P Sbjct: 330 LKDRLMTKNVAEEIAEKICESVAASLLGKKLGTFTRVSSAVKEAMGDALLRILTPKRSID 389 Query: 104 ------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 + RP+VI+ VGVNGVGK+T + K++ + L V++AA DTFRS A++Q Sbjct: 390 ILRDVKSAKDEGRPYVIVFVGVNGVGKSTSLAKVAYWLKSHELSVLIAACDTFRSGAVEQ 449 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL------------ 205 L+ A R D A +A EA A K DV+++DTAGR+ Sbjct: 450 LRTHAKRLQTTLYEKGYEKDPANVAREAIATAAKTKHDVVLVDTAGRMQASFSKLCFSLF 509 Query: 206 ------------HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +N LM + +I V K P VL V +A G A+ Q+ F+ Sbjct: 510 SLRSYNTYVFFFQDNEPLMRALANLINVNK------PDLVLFVGEALVGNEAVDQLSKFN 563 Query: 254 A----VAGTT------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 ++ T G+++TK D + G + +V P+ FLG G+ +DL Sbjct: 564 QTLADLSATAKRKPIDGILLTKFDTIDDKVGAALSMVYVSGAPIMFLGCGQSYHDL 619 >gi|229824955|ref|ZP_04451024.1| hypothetical protein GCWU000182_00304 [Abiotrophia defectiva ATCC 49176] gi|229790958|gb|EEP27072.1| hypothetical protein GCWU000182_00304 [Abiotrophia defectiva ATCC 49176] Length = 446 Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 82/309 (26%), Positives = 143/309 (46%), Gaps = 19/309 (6%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S KLTK F + K K D+ ++ + E++ L+ +D+ VA+ ++ + Sbjct: 5 SLTEKLTKVFKNLRGKGKLNENDVKAALK-------EVKIALLEADVNFKVAKNFIKTVE 57 Query: 72 TKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 + +DV Q V+ V+E + +L + VI++ G+ G GKTT Sbjct: 58 ERAIGQDVMNSLTPGQMVIKIVNEEMTALLGSEKTELTLKPTQEITVIMMCGLQGAGKTT 117 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 K++ K K +L A D +R AAI QL++ ++ G +A A Sbjct: 118 TTAKIAAKFK-GTRKPLLVACDVYRPAAIKQLQVNGEKVGVPVFTMGDGHKPPNIAKAAI 176 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+ +++ +DTAGRL + +M +++ + + +D L V+DA TGQ A+ Sbjct: 177 EHAKNNDYNMIFLDTAGRLQIDEDMMQ---ELVDIKEAVDVT---QTLLVVDAMTGQEAV 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 F + G+++TK+DG RGG + I P+ + G+GE ++DLE F Sbjct: 231 NVATTFDSKIELDGVVLTKLDGDTRGGAALSIRSVTGKPILYAGMGEKLSDLEQFYPDRM 290 Query: 307 SAVITGCLD 315 + I G D Sbjct: 291 ANRILGMGD 299 >gi|284931538|gb|ADC31476.1| signal recognition particle protein Ffh [Mycoplasma gallisepticum str. F] Length = 451 Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 8/203 (3%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCS 172 I++VG+ G GKTT + KL+K ++ K L G D +R AAIDQL A++ + F + Sbjct: 109 IMLVGLQGSGKTTTVAKLAKFLNKQKQKNSLLVGLDVYRPAAIDQLNTLAEQINMPF-YN 167 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 E SD A + + A+ K D++I DTAGRL N LM +++ + +DP Sbjct: 168 EGLSDPVKTAKNSIEIAKEKNCDLIIYDTAGRLQTNVELM---NELVNIRNTVDPD---E 221 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 ++ V+D +GQ + F+ +G+I+TK+D AR G + + +P+ F G Sbjct: 222 IILVVDGLSGQEIINIATEFNNYLKLSGIIITKLDSDARAGAALSLRSILNVPIKFTTSG 281 Query: 293 EGINDLEPFVAKDFSAVITGCLD 315 E ++ +E F + + I G D Sbjct: 282 EKLDAIELFYPERIADRILGFGD 304 >gi|284032661|ref|YP_003382592.1| signal recognition particle protein [Kribbella flavida DSM 17836] gi|283811954|gb|ADB33793.1| signal recognition particle protein [Kribbella flavida DSM 17836] Length = 537 Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 81/282 (28%), Positives = 134/282 (47%), Gaps = 16/282 (5%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLM 97 D E+ L+ +D+ + V ++ + + + +V Q+V+ V+E + +L Sbjct: 40 DATAREIRIALLEADVALPVVKEFIAAVKERASGAEVRGGLNPAQQVIKIVNEELVTILG 99 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAID 156 ++ P VI++ G+ G GKTT+ GKL+K + + + ML A D R A+ Sbjct: 100 GATRELRM-AKKPPTVIMLAGLQGAGKTTLAGKLAKWLKETRHQTPMLVAADLQRPNAVT 158 Query: 157 QLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 QL++ R E G+ D +A A +A+ K+ V+I+DTAGRL + LM Sbjct: 159 QLQVVGQRAGVPVFAPEPGNGVGDPVEVARRAMDEARTKQHSVVIVDTAGRLGVDEELMK 218 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 IR D +P +L V+DA GQ+A+ + F G G++++K+DG ARGG Sbjct: 219 QAAD-IR-----DAVSPDEILFVVDAMIGQDAVTTAQAFLDGVGFDGVVLSKLDGDARGG 272 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I V F GE + D + F ++ I G D Sbjct: 273 AALSIAQVTGRQVMFASNGEKLEDFDVFHPDRMASRILGMGD 314 >gi|91762614|ref|ZP_01264579.1| signal recognition particle protein [Candidatus Pelagibacter ubique HTCC1002] gi|91718416|gb|EAS85066.1| signal recognition particle protein [Candidatus Pelagibacter ubique HTCC1002] Length = 452 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/294 (26%), Positives = 143/294 (48%), Gaps = 14/294 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 LT F LK+ + + +++D+G+R + L+ +D+ + VA+ + ++ Sbjct: 1 MFENLTNKFEEIFSSLKKAPS--LDEKQVDEGLRA-IRQALLEADVSLDVAKDFITKVKP 57 Query: 73 KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVI 128 K +++ D V ++++ L+ L N D + P +++VG+ G GKTT Sbjct: 58 KVLGQEIIRSTSPGDMVVKIVYDELVSLLGESNTDINLNAVPPVPMMLVGLQGSGKTTTT 117 Query: 129 GKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 KL+K + K +M+ + D +R AA +QL+ ++ + + G A + A Sbjct: 118 AKLAKYLEKNKKKKIMMVSLDVYRPAAQEQLRSLGEQNNILTLPIIEGQLPADICRRAVS 177 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A ++++ DTAGR + +M+ I ++ ++ P V D+ TGQ A Sbjct: 178 AASLNGAEIILFDTAGRTQIDLQMMSEIKQIENIIN------PTETFLVADSLTGQVAAE 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F TG+++T+ DG ARGG + + ++P+ FLGVGE I +LE F Sbjct: 232 VAKEFKNTVNLTGIVLTRADGDARGGAALSMKYVSQVPIKFLGVGEKIENLEVF 285 >gi|71082962|ref|YP_265681.1| signal recognition particle protein [Candidatus Pelagibacter ubique HTCC1062] gi|71062075|gb|AAZ21078.1| signal recognition particle protein [Candidatus Pelagibacter ubique HTCC1062] Length = 452 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/294 (26%), Positives = 143/294 (48%), Gaps = 14/294 (4%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 LT F LK+ + + +++D+G+R + L+ +D+ + VA+ + ++ Sbjct: 1 MFENLTNKFEEIFSSLKKAPS--LDEKQVDEGLRA-IRQALLEADVSLDVAKDFIAKVKP 57 Query: 73 KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVI 128 K +++ D V ++++ L+ L N D + P +++VG+ G GKTT Sbjct: 58 KVLGQEIIRSTSPGDMVVKIVYDELVSLLGESNTDINLNAVPPVPMMLVGLQGSGKTTTT 117 Query: 129 GKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 KL+K + K +M+ + D +R AA +QL+ ++ + + G A + A Sbjct: 118 AKLAKYLEKNKKKKIMMVSLDVYRPAAQEQLRSLGEQNNILTLPIIEGQLPADICRRAVS 177 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A ++++ DTAGR + +M+ I ++ ++ P V D+ TGQ A Sbjct: 178 AASLNGAEIILFDTAGRTQIDLQMMSEIKQIENIIN------PTETFLVADSLTGQVAAE 231 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F TG+++T+ DG ARGG + + ++P+ FLGVGE I +LE F Sbjct: 232 VAKEFKNTVNLTGIVLTRADGDARGGAALSMKYVSQVPIKFLGVGEKIENLEVF 285 >gi|319406337|emb|CBI79974.1| signal recognition particle protein [Bartonella sp. AR 15-3] Length = 519 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/209 (33%), Positives = 112/209 (53%), Gaps = 13/209 (6%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADR---TS 166 P V+++VG+ G GKTT KL+K+++D KV++A+ DT R AA +QL+ ++ S Sbjct: 100 PVVVMLVGLQGSGKTTTTAKLAKRLTDKHNKKVLMASLDTRRPAAQEQLRQLGEQVQIAS 159 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 V + D +A A +A A+ DV+++DTAGR H + LM + K I+ + Sbjct: 160 LPVVPDQSAVDISARAVQA---AKLGGYDVVLLDTAGRNHIDEALMLEL-KEIKASSK-- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P+ ++ V D+ TGQ+A+ F G TG+I+T+M+ RGG + + P+ Sbjct: 214 ---PYEIMLVADSLTGQDAVNLARSFDERIGITGIILTRMESDGRGGAALSMRAVTGKPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G GE + LE F + + I G D Sbjct: 271 KAIGTGEKMEALEEFHPRRIADRILGMGD 299 >gi|123473765|ref|XP_001320069.1| SRP54-type protein [Trichomonas vaginalis G3] gi|121902866|gb|EAY07846.1| SRP54-type protein, putative [Trichomonas vaginalis G3] Length = 533 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 101/201 (50%), Gaps = 18/201 (8%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD- 168 +P+V +GVNGVGK+T + K++ M KV++ DTFRS A+ QL A+R + Sbjct: 323 KPYVFSFIGVNGVGKSTTLAKVAYLMKSHDFKVLIVGCDTFRSGAVKQLAEHAERLGIEL 382 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 F D +A +A + A KK+DV+++DTAGR+ N+ LM I ++I +K Sbjct: 383 FQRGNDRRDPVPVAKDAIQYAIDKKIDVVLVDTAGRMQNSEGLMKQIARLINEVK----- 437 Query: 229 APHSVLQVLDATTGQNALRQVEMFHA----------VAGTTGLIMTKMDGT-ARGGGLIP 277 P L V +A G N Q+ F G G+++TK D + G + Sbjct: 438 -PDLSLFVAEALVGGNGSDQISSFDMNLKRYAGVKDAKGIDGIVLTKFDTIDDKVGAALT 496 Query: 278 IVVTHKIPVYFLGVGEGINDL 298 +V P+ +LGVG+ DL Sbjct: 497 LVYETGHPIIYLGVGQTYRDL 517 >gi|156847719|ref|XP_001646743.1| hypothetical protein Kpol_1023p54 [Vanderwaltozyma polyspora DSM 70294] gi|156117423|gb|EDO18885.1| hypothetical protein Kpol_1023p54 [Vanderwaltozyma polyspora DSM 70294] Length = 612 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 86/305 (28%), Positives = 145/305 (47%), Gaps = 56/305 (18%) Query: 48 ELEDLLIRSDIGVAVA----QKIVEELLTKRYAKDVSVQRVLYD-------------VS- 89 +L+D LI ++ A Q++ +L+ + A SV+ ++ VS Sbjct: 308 KLKDQLITKNVAPEAADFLTQQVSRDLVGSKTANWTSVENAAHESLTKAITQILTPGVSV 367 Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 +L+H++ S+P D P+V VVGVNGVGK+T + KL+ + LKV++ A DT Sbjct: 368 DLLHQIQKKTSQP-GPDGKKVPYVFSVVGVNGVGKSTNLSKLAFWLLQNNLKVLIVACDT 426 Query: 150 FRSAAIDQLKIWAD-------------------RTSADFV----CSEIGSD-AAALAYEA 185 FRS A++QL++ + ++ D+V GSD +A +A Sbjct: 427 FRSGAVEQLRVHVENLAQLTDESHVRGSKNKRGKSGNDYVELFEAGYGGSDLVTKIAKQA 486 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 K A D++++DTAGR HN++ LM+ + K P ++ V +A G ++ Sbjct: 487 IKYASDNDFDIVLMDTAGRRHNDATLMSPLKSFAEQAK------PDKIIMVGEALVGTDS 540 Query: 246 LRQVEMFHAVAGTTG----LIMTKMDGTARG--GGLIPIVVTHKIPVYFLGVGEGINDLE 299 ++Q + F+ G I++K D T G G ++ +V IP+ F+GVG+ DL Sbjct: 541 VQQAKNFNNAFGKNRNLDFFIVSKCD-TVGGMLGTMVNMVYATGIPILFVGVGQTYTDLR 599 Query: 300 PFVAK 304 K Sbjct: 600 TLSVK 604 >gi|118351025|ref|XP_001008791.1| SRP54-type protein, GTPase domain containing protein [Tetrahymena thermophila] gi|89290558|gb|EAR88546.1| SRP54-type protein, GTPase domain containing protein [Tetrahymena thermophila SB210] Length = 618 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/276 (26%), Positives = 135/276 (48%), Gaps = 42/276 (15%) Query: 47 EELEDLLIRSDIGVAVAQKIVEEL---LTKRYAKDVSV--QRVLYDVSELIHKMLMP--- 98 ++ ++ L+ ++G +AQ++ + + L AK +++ + V + + I K+L P Sbjct: 337 DKFKEQLMNKNVGEQIAQQLCDSIKKNLINTQAKALTLLNKTVKESLQDAISKILTPKRN 396 Query: 99 ---LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 +++ +P++I +GVNGVGK+T + K++ G VM AA D FR+ A+ Sbjct: 397 IDIIAEAMRSREKGKPYIITFIGVNGVGKSTNLAKVAYLFKKEGFSVMFAACDNFRAGAV 456 Query: 156 DQLKIWADRTSADFVCSEI-------GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 +Q+K C EI + A +A++A ++AQAKKVDVL+IDTAGR+ +N Sbjct: 457 EQIKTHG-------RCLEIPVFDRGYKDEPADIAFQAIREAQAKKVDVLLIDTAGRMQDN 509 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA----------VAGT 258 LM + ++ + P ++ + +A G + Q+ F+ + Sbjct: 510 EPLMKQLSTLVV------QNNPDLIVFIGEALVGNDGTDQLMKFNKALIDLSPKDRIREI 563 Query: 259 TGLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGE 293 +I++K D + G + + P+ F GVG+ Sbjct: 564 DAIILSKFDTVDDKVGAALSMTYNTGKPILFCGVGQ 599 >gi|115702556|ref|XP_797190.2| PREDICTED: similar to signal recognition particle receptor alpha subunit (sr-alpha), partial [Strongylocentrotus purpuratus] Length = 563 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 80/271 (29%), Positives = 133/271 (49%), Gaps = 44/271 (16%) Query: 35 IISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVS 89 ++ S+ LD V +++ D L ++ +A+K+ E + TK K + + RV V Sbjct: 294 LVGSKTLDKETMAPVLDKMRDHLTAKNVARDIAEKLCESVATKLEGKVLGTFGRVTSVVK 353 Query: 90 ELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139 E + + L+ + P ++P I GVNGVGK+T + K+ + + G Sbjct: 354 ETLQESLVQILSPRRRVDILRDALEAKARNKPFSITFCGVNGVGKSTNLAKICFWLIENG 413 Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-------------IGSDAAALAYEAF 186 +V++AA DTFR+ A++QL+ +A + G DAA +A EA Sbjct: 414 FRVLIAACDTFRAGAVEQLRTHERHLNALHPAEKHGGHAPVQLYEKGYGKDAAGIAMEAI 473 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 K A+ + DV++IDTAGR+ +N LM + K+I+V + P VL V +A G A+ Sbjct: 474 KFARDYRFDVVLIDTAGRMQDNEPLMRALSKLIKV------NRPDLVLFVGEALVGNEAV 527 Query: 247 RQVEMF-HAVAGTT---------GLIMTKMD 267 Q+ F HA+A + G+++TK D Sbjct: 528 DQLTKFNHALADFSDSDDPRLIDGIVLTKFD 558 >gi|189219288|ref|YP_001939929.1| Signal recognition particle GTPase [Methylacidiphilum infernorum V4] gi|189186146|gb|ACD83331.1| Signal recognition particle GTPase [Methylacidiphilum infernorum V4] Length = 440 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 120/260 (46%), Gaps = 8/260 (3%) Query: 44 GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIH-KMLMPLSK 101 G E+ L+ SD+ V V ++I EE+ K K V R ++ H +++ L Sbjct: 33 GAIREIRLALLASDVHVQVVKEICEEVKQKSLGKKVLETIRPGDQFIKIFHDELIQYLEA 92 Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 N + RP IL+ G+NG GKTT KL+ +V L A D R AAI QL Sbjct: 93 DKNGLSTDRPLRILLCGLNGSGKTTTAAKLALWCKKNRERVGLVAADLTRPAAIAQLSKL 152 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 A + A + ++ ++ V+I DTAGRL + L+ + + + Sbjct: 153 ASQVGAPVYSPQEAEKLDDFLLRVATESVQDRLSVVIYDTAGRLDLDDELLEELHHIYEL 212 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 + +P VL V+D+ TGQ + V F TGLI++K DG ARGG + Sbjct: 213 V------SPQEVLIVIDSATGQKGVDVVAAFRQKIPLTGLILSKFDGDARGGAAFSVKKV 266 Query: 282 HKIPVYFLGVGEGINDLEPF 301 +P+ F+G GE I LE F Sbjct: 267 TGVPILFMGTGEKIESLEVF 286 >gi|241890047|ref|ZP_04777345.1| signal recognition particle protein [Gemella haemolysans ATCC 10379] gi|241863669|gb|EER68053.1| signal recognition particle protein [Gemella haemolysans ATCC 10379] Length = 450 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 85/305 (27%), Positives = 147/305 (48%), Gaps = 20/305 (6%) Query: 21 FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + S +L+ I + ++ + V+E + ++ L+ +D+ V ++ V+++ + Sbjct: 3 FENLSERLQNTIAKLTGKGKVSEADVKEMMREVRLALLEADVNFKVVKEFVKKISERAVG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V Q+V+ V+E + +L + N + +++VG+ G GKTT GKL Sbjct: 63 TEVMKSLTPAQQVVKIVNEELVDLLGGSNVELNQ--GGKITTVMMVGLQGAGKTTTAGKL 120 Query: 132 S-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 + K K +L A D +R AA+ QLK + D + D + + A+ Sbjct: 121 ALKVKKTMKKKPLLIAADVYRPAAVQQLKTLGKQL--DIEVFYVDKDPVDIVKDGLAFAK 178 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + +IIDTAGRLH + +LM + K I+ P +L V+D+ GQ A+ Sbjct: 179 ENYFNYVIIDTAGRLHIDELLMDEL-KNIKA-----ATTPDEILLVVDSMIGQEAVNIAT 232 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F TGL++TK+DG RGG + I P+ +G+GE +NDLE F + ++ I Sbjct: 233 SFDEQLDITGLVLTKLDGDTRGGAALSIKSITGKPIKLVGMGEKMNDLELFHPERMASRI 292 Query: 311 TGCLD 315 G D Sbjct: 293 LGMGD 297 >gi|71005446|ref|XP_757389.1| hypothetical protein UM01242.1 [Ustilago maydis 521] gi|46096616|gb|EAK81849.1| hypothetical protein UM01242.1 [Ustilago maydis 521] Length = 705 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 106/214 (49%), Gaps = 32/214 (14%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA---DRTSA 167 P+ I VGVNGVGK+T + K+ + L+V++AA DTFR+ A++QL++ + Sbjct: 483 PYSICFVGVNGVGKSTNLAKVCFWLLQNRLRVLIAACDTFRAGAVEQLRVHVRNLGQLRV 542 Query: 168 DFVCSE------------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 D V E G DAA +A +A A+A+ DV++IDTAGR+ +N LM + Sbjct: 543 DGVALEEQKGHIELYERGYGKDAAGIAKDALSYAKAEGFDVVLIDTAGRMQDNEPLMRAL 602 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV----------AGTTGLIMTK 265 K++ V + P ++ V +A G A+ Q+ F G G ++TK Sbjct: 603 AKLVSV------NRPDKIIFVGEALVGNEAVDQITKFDGAMKDFSGVSNPRGLDGSLLTK 656 Query: 266 MDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 D + G + +P+YFLG G+ DL Sbjct: 657 WDTVDDKVGTALTTTSATGLPIYFLGTGQTYTDL 690 >gi|229019040|ref|ZP_04175881.1| Signal recognition particle protein [Bacillus cereus AH1273] gi|228742280|gb|EEL92439.1| Signal recognition particle protein [Bacillus cereus AH1273] Length = 316 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 10/175 (5%) Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIID 200 ML A D +R AAI QL+ + D +G + +A +A +A+ D ++ID Sbjct: 1 MLVAADIYRPAAIKQLETLGKQL--DMPVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLID 58 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRLH + LM + K+ V K P + V+DA TGQ+A+ + FH G TG Sbjct: 59 TAGRLHIDEELMDELAKVKEVAK------PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTG 112 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +++TK+DG RGG + I P+ F G+GE ++ +E F + ++ I G D Sbjct: 113 VVLTKLDGDTRGGAALSIKAVTNTPIKFAGMGEKLDAIEAFHPERMASRILGMGD 167 >gi|58699702|ref|ZP_00374368.1| signal recognition particle protein [Wolbachia endosymbiont of Drosophila ananassae] gi|58533780|gb|EAL58113.1| signal recognition particle protein [Wolbachia endosymbiont of Drosophila ananassae] Length = 230 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 12/232 (5%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDVS-VQRVLYDVSELIHKMLMPLSKP 102 E+ LI +D+ + VA+K + ++ K + K VS Q ++ V + + +L Sbjct: 3 EIRIALIEADVSLEVAKKFINDIKDKVIGEKVIKSVSPAQMIIKIVQDNLVAVLGSEKSD 62 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 N P VI++VG+ G GKTT GKL+ K+ KVMLA+ D +R AA QL++ Sbjct: 63 LNLAVKP-PAVIMMVGLQGAGKTTTSGKLALKLKKQKKKVMLASLDIYRPAAQKQLEVLG 121 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 + + I + A A+ DVLI+DTAGRLH ++ +M ++ + Sbjct: 122 KQIDVQTLPVVIDEKPITITKRALAAAKNDNYDVLILDTAGRLHIDNNMM----NELKAV 177 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 K + +P V+ V DA GQ+A+ + F+ V G TG+I+T++DG ARGG Sbjct: 178 KEI--ASPAEVILVADAMIGQDAVNIAKSFNEVIGVTGIILTRVDGDARGGA 227 >gi|296504340|ref|YP_003666040.1| signal recognition particle protein [Bacillus thuringiensis BMB171] gi|296325392|gb|ADH08320.1| signal recognition particle protein [Bacillus thuringiensis BMB171] Length = 316 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 10/175 (5%) Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIID 200 ML A D +R AAI QL+ + D +G + +A +A +A+ D ++ID Sbjct: 1 MLVAADIYRPAAIKQLETLGKQL--DMPVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLID 58 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRLH + LM + K+ V K P + V+DA TGQ+A+ + FH G TG Sbjct: 59 TAGRLHIDEELMDELAKVKEVAK------PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTG 112 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +++TK+DG RGG + I P+ F G+GE ++ +E F + ++ I G D Sbjct: 113 VVLTKLDGDTRGGAALSIKAVTNTPIKFAGMGEKLDAIEAFHPERMASRILGMGD 167 >gi|299142906|ref|ZP_07036033.1| signal recognition particle protein [Prevotella oris C735] gi|298575635|gb|EFI47514.1| signal recognition particle protein [Prevotella oris C735] Length = 449 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/192 (34%), Positives = 101/192 (52%), Gaps = 7/192 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT GKL+ + + K L A D +R AAI+QLK+ ++ Sbjct: 99 PAVILMSGLQGSGKTTFSGKLANLLKNKKNKKPLLVACDVYRPAAIEQLKVVGEQIGVPV 158 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 D +A A ++A+AK DV+I+DTAGRL + +M I + L Sbjct: 159 YSEPESKDVLTIANNAVREAKAKGNDVVIVDTAGRLAVDEEMMTEIANLKNALH------ 212 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + I P+ F+ Sbjct: 213 PDETLFVVDSMTGQDAVNTAKEFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVTKPIKFV 272 Query: 290 GVGEGINDLEPF 301 G GE + ++ F Sbjct: 273 GTGEKMEAIDAF 284 >gi|281424055|ref|ZP_06254968.1| signal recognition particle protein [Prevotella oris F0302] gi|281401838|gb|EFB32669.1| signal recognition particle protein [Prevotella oris F0302] Length = 449 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/192 (34%), Positives = 101/192 (52%), Gaps = 7/192 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADF 169 P VIL+ G+ G GKTT GKL+ + + K L A D +R AAI+QLK+ ++ Sbjct: 99 PAVILMSGLQGSGKTTFSGKLANLLKNKKNKKPLLVACDVYRPAAIEQLKVVGEQIGVPV 158 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 D +A A ++A+AK DV+I+DTAGRL + +M I + L Sbjct: 159 YSEPESKDVLTIANNAVREAKAKGNDVVIVDTAGRLAVDEEMMTEIANLKNALH------ 212 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + I P+ F+ Sbjct: 213 PDETLFVVDSMTGQDAVNTAKEFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVTKPIKFV 272 Query: 290 GVGEGINDLEPF 301 G GE + ++ F Sbjct: 273 GTGEKMEAIDAF 284 >gi|89891049|ref|ZP_01202557.1| Signal recognition protein [Flavobacteria bacterium BBFL7] gi|89516693|gb|EAS19352.1| Signal recognition protein [Flavobacteria bacterium BBFL7] Length = 442 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 105/212 (49%), Gaps = 7/212 (3%) Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 + + P VIL+ G+ G GKTT GKL+ + + + +L A D +R AAIDQL + + Sbjct: 93 LNLTGNPTVILMSGLQGSGKTTFSGKLANFLKTKKSKRPLLVACDIYRPAAIDQLHVVGE 152 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + + D ++ A A+ +V+IIDTAGRL + +M I + +K Sbjct: 153 SVGVEVFSNRDEKDPVKISEAAIAHAKQNGFNVVIIDTAGRLAVDEEMMTEIANVHAAVK 212 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 P L V+D+ TGQ+A+ + F+ G+I+TK+DG RGG + I Sbjct: 213 ------PQETLFVVDSMTGQDAVNTAKAFNERLNFDGVILTKLDGDTRGGAALSIKSVVD 266 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+G GE + ++ F + I G D Sbjct: 267 KPIKFIGTGEKMEAIDVFYPSRMADRILGMGD 298 >gi|162148863|ref|YP_001603324.1| signal recognition particle protein [Gluconacetobacter diazotrophicus PAl 5] gi|209545388|ref|YP_002277617.1| signal recognition particle protein [Gluconacetobacter diazotrophicus PAl 5] gi|161787440|emb|CAP57035.1| putative signal recognition particle protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533065|gb|ACI53002.1| signal recognition particle protein [Gluconacetobacter diazotrophicus PAl 5] Length = 461 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/215 (34%), Positives = 111/215 (51%), Gaps = 8/215 (3%) Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKI 160 P N + + P IL+VG+ G GKTT GK++ +++ K V+LA+ DT R AA QL+ Sbjct: 93 PLNLN-AVPPVPILMVGLQGSGKTTTSGKIALRLATRERKRVLLASLDTQRPAAQLQLQQ 151 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A+R + G +A A + + DV+I+DTAGRL + LM + + IR Sbjct: 152 LAERAGVASLPIVPGQTPVEIARRAMDTGRREGYDVVILDTAGRLSIDEALMDEV-RAIR 210 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 P L V+DA TGQ+A+ F+ G TG++MT+MDG ARGG + + Sbjct: 211 T-----ETTPAETLLVVDAMTGQDAVNTARAFNEAVGVTGVVMTRMDGDARGGAALSMRA 265 Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ G GE ++ LE F + + I G D Sbjct: 266 MTGAPIKLTGSGEKLDALEEFHPERVAGRILGLGD 300 >gi|27904844|ref|NP_777970.1| signal recognition particle protein [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31340420|sp|Q89AE4|SRP54_BUCBP RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog gi|27904242|gb|AAO27075.1| signal recognition particle protein [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 450 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +IL++G+ G GKTT KL + + + KV++ + D +R AAI QLK+ + + F Sbjct: 100 PAIILMIGLQGSGKTTTTAKLGQLIRTKYKKKVIVTSIDIYRLAAIKQLKMLSKQAKISF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S + A + A+ K DVL+IDTAGRL + +M +L + Sbjct: 160 FPSNNTQSPKDIVQHAIQHAKLKFYDVLLIDTAGRLQIDKKMMN------ELLDVYNISH 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P V DA GQ+++ + F+ + I+TK D R G ++ I K P+ F+ Sbjct: 214 PIETFFVADAMFGQDSINVINEFNKYLPVSSFIITKTDSDTRAGIILSIKYLTKKPIKFI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE + +LE F ++ I G D Sbjct: 274 GTGEKLEELELFYPDRIASRILGMGD 299 >gi|289740369|gb|ADD18932.1| signal recognition particle receptor alpha subunit [Glossina morsitans morsitans] Length = 618 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 33/231 (14%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW------ 161 ++ P+ I+ GVNGVGK+T + K+ + + V++AA DTFR+ A++QL+ Sbjct: 396 NNTPYTIIFCGVNGVGKSTNLAKICFWLIENDFSVLIAACDTFRAGAVEQLRTHTRHLNA 455 Query: 162 ---ADR----TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 ADR + G DAA +A EA K A+ +VDV+++DTAGR+ +N LM Sbjct: 456 LHPADRHDGRSMVQLYEKGYGKDAAGIAMEAIKFARDTRVDVVLVDTAGRMQDNEPLMRS 515 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT---------GLIMT 264 + K+I+V + P VL V +A G A+ Q+ F+ ++A + G+++T Sbjct: 516 LAKLIKV------NDPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSDGNPHIIDGIVLT 569 Query: 265 KMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 K D + G I + P+ F+G G+ DL+ A + +AV+ + Sbjct: 570 KFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLK---AINVNAVVNSLM 617 >gi|312792668|ref|YP_004025591.1| flagellar biosynthetic protein flhf [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179808|gb|ADQ39978.1| flagellar biosynthetic protein FlhF [Caldicellulosiruptor kristjanssonii 177R1B] Length = 372 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 94/322 (29%), Positives = 152/322 (47%), Gaps = 43/322 (13%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGI----------TDIISSRRLDDGVREELEDLLIRSD 57 S ++ I++L K S LKE I T +S + D +RE L Sbjct: 75 SLQMTQIKELEKKIDSLEKALKEVIKKEQEEGINQTKELSKKNFLDVMRENL-------- 126 Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML---MPLSKPFNWDFSHRPHVI 114 I V +IV+ LL+ A + S+ V+ ++ + I ML PLS FN F P ++ Sbjct: 127 IKNGVENEIVDMLLSNLSA-EASINAVVNNMYKEIKNMLGAAAPLS--FNSKF---PKIV 180 Query: 115 LVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCS 172 VG GVGKTT I K++ K M + G KV DT+R AA++QLK +A+ + V Sbjct: 181 FFVGPTGVGKTTTIAKIAAKLMFEDGKKVGFITADTYRIAAVEQLKTYAEIMNIKTKVWY 240 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 E+ D E+F + DV+++DTAGR H N M + + P Sbjct: 241 EV--DEYDRIIESFADS-----DVVLVDTAGRSHKNQEHMDELKAFVA------KANPDE 287 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 V +L ATT + ++V ++ +I+TK+D + G ++ I + P+ ++ G Sbjct: 288 VFLLLSATTQPSVFKEVVNTYSFLDDYKVIITKVDEVSTYGNILNIRYFTQKPIAYITTG 347 Query: 293 EGI-NDLEPFVAKDFSAVITGC 313 + + +D+E F + F+ +I G Sbjct: 348 QNVPDDIEQFNPEQFAKLIIGS 369 >gi|146296300|ref|YP_001180071.1| GTP-binding signal recognition particle [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409876|gb|ABP66880.1| GTP-binding signal recognition particle SRP54, G- domain [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 370 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 90/321 (28%), Positives = 153/321 (47%), Gaps = 43/321 (13%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDI--------ISSRRLDDGVREELEDLLIRSDIG 59 S LS I++L K S +KE I D +S + D +RE L+ Sbjct: 75 SLQLSQIKELEKKIDSLEKTIKEVIKDTNIIPEVKEVSKKNFLDVMRENLK--------K 126 Query: 60 VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVG 118 V ++IVE LL K D S+ ++ ++ + I +L P++ + S +P V+ VG Sbjct: 127 NGVEEEIVEGLLAK-VNWDGSINNMVNNMYKEIKNILGTPVTLSLD---SKQPQVVFFVG 182 Query: 119 VNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 GVGKTT I K++ K M + G KV DT+R AA++QLK +A EI + Sbjct: 183 PTGVGKTTTIAKIAAKLMFEEGKKVGFITADTYRIAAVEQLKTYA----------EIMNI 232 Query: 178 AAALAYEAFKQAQAKK----VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 + YE + Q K DV+++DTAGR H N M + + + +P V Sbjct: 233 KTKVWYEVDEYDQIIKSFDDSDVVLVDTAGRSHKNQEHMDELRAFV------EKASPDEV 286 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 +L ATT + +++ ++ +I+TK+D + G ++ I + P+ ++ G+ Sbjct: 287 FLLLSATTQPSVFKEIVNTYSFIDNYKVIITKVDEVSTYGNILNIKHYTQKPIAYVTTGQ 346 Query: 294 GI-NDLEPFVAKDFSAVITGC 313 + +D++ F + F+ +I G Sbjct: 347 NVPDDIQQFNPEHFAKLIIGS 367 >gi|156086872|ref|XP_001610843.1| signal recognition particle SRP54 protein [Babesia bovis T2Bo] gi|154798096|gb|EDO07275.1| signal recognition particle SRP54 protein, putative [Babesia bovis] Length = 499 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/268 (29%), Positives = 131/268 (48%), Gaps = 12/268 (4%) Query: 53 LIRSDIGVAVAQKIVE--ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS---KPFNWDF 107 L+ +D+ V + +++ E +L + +A + + + +I + + LS KP+ Sbjct: 39 LLSADVNVKLVRQLRENVKLQVRLHADALGANKRKFIQKAVIEEFINMLSSDRKPYVPKK 98 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 H ++I+ VG+ G GKTT K + G + L DTFR+ A DQLK A + Sbjct: 99 GH-ANIIMFVGLQGAGKTTTCTKFAYHYQKKGWRTALICADTFRAGAFDQLKQNAAKVKI 157 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 F S ++A +A E + + +K D++I+DT+GR L + + +K Sbjct: 158 PFFGSYSEANAVRVAAEGVAKFKEEKYDIIIVDTSGRHKQEESLFEEMRLIHEAVK---- 213 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 P V+ V+D+ GQ Q F+ V +I+TK+DG A+GGG + V P+ Sbjct: 214 --PDDVIFVMDSHIGQACYDQAAAFNKVVDVGSVIITKLDGHAKGGGALAAVAATNSPII 271 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315 F+G GE ++ E F AK F + + G D Sbjct: 272 FIGTGEHFDNFEKFDAKSFVSRMLGMGD 299 >gi|254586281|ref|XP_002498708.1| ZYRO0G16720p [Zygosaccharomyces rouxii] gi|238941602|emb|CAR29775.1| ZYRO0G16720p [Zygosaccharomyces rouxii] Length = 605 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 110/218 (50%), Gaps = 35/218 (16%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA------- 162 +P+V VVGVNGVGK+T + KL+ + L+V++ A DTFRS A++QL++ Sbjct: 380 QPYVFSVVGVNGVGKSTNLSKLAFWLLQNNLRVLVVASDTFRSGAVEQLRVHVENLAELT 439 Query: 163 ------------DRTSAD----FVCSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRL 205 D+T D F GSD +A +A K A+ ++ D++++DTAGR Sbjct: 440 DESHIRGSKNRRDKTGNDHVELFEAGYGGSDLVTKIAKQAIKYAKEQEFDIVLMDTAGRR 499 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG----L 261 HN+ LM+ + K P ++ V +A G ++++Q + F+ G Sbjct: 500 HNDPTLMSPLKSFAEQAK------PDKIIMVGEALVGTDSVQQAKNFNEAFGRVRNLDFF 553 Query: 262 IMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 I++K D G ++ +V IP+ F+GVG+ DL Sbjct: 554 IISKCDTVGEMLGTMVNMVYATGIPILFVGVGQTYTDL 591 >gi|328352201|emb|CCA38600.1| Signal recognition particle receptor subunit alpha [Pichia pastoris CBS 7435] Length = 558 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 113/206 (54%), Gaps = 21/206 (10%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD---R 164 + +P+VI VVGVNGVGK+T + KL+ + +V++ A DTFRS A++QL++ + + Sbjct: 345 ARKPYVISVVGVNGVGKSTNLSKLAFWLLSNKYRVLITACDTFRSGAVEQLRVHVNNLKK 404 Query: 165 TSADFVCSEI------GSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 + D E+ G+D + +A A + A+ K D++++DTAGR HN++ LMA + Sbjct: 405 LTEDESHVELFQGGYGGADLVSKIAKGAIQYAEENKFDIVLLDTAGRRHNDAQLMAPLQG 464 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARG- 272 ++ K P ++ V +A G ++++Q + F+ G I++K D Sbjct: 465 FVKAAK------PDKIIMVGEALVGTDSVQQAKNFNGAFGPGRTLDFFIISKCDTVGDLI 518 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDL 298 G ++ +V IP+ F+G G+ DL Sbjct: 519 GSMVNMVYATGIPILFVGTGQTYTDL 544 >gi|254568342|ref|XP_002491281.1| Signal recognition particle (SRP) receptor-alpha subunit [Pichia pastoris GS115] gi|238031078|emb|CAY69001.1| Signal recognition particle (SRP) receptor-alpha subunit [Pichia pastoris GS115] Length = 558 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 113/206 (54%), Gaps = 21/206 (10%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD---R 164 + +P+VI VVGVNGVGK+T + KL+ + +V++ A DTFRS A++QL++ + + Sbjct: 345 ARKPYVISVVGVNGVGKSTNLSKLAFWLLSNKYRVLITACDTFRSGAVEQLRVHVNNLKK 404 Query: 165 TSADFVCSEI------GSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 + D E+ G+D + +A A + A+ K D++++DTAGR HN++ LMA + Sbjct: 405 LTEDESHVELFQGGYGGADLVSKIAKGAIQYAEENKFDIVLLDTAGRRHNDAQLMAPLQG 464 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARG- 272 ++ K P ++ V +A G ++++Q + F+ G I++K D Sbjct: 465 FVKAAK------PDKIIMVGEALVGTDSVQQAKNFNGAFGPGRTLDFFIISKCDTVGDLI 518 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDL 298 G ++ +V IP+ F+G G+ DL Sbjct: 519 GSMVNMVYATGIPILFVGTGQTYTDL 544 >gi|320582191|gb|EFW96409.1| Signal recognition particle (SRP) receptor-alpha subunit [Pichia angusta DL-1] Length = 550 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 83/284 (29%), Positives = 138/284 (48%), Gaps = 39/284 (13%) Query: 45 VREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100 V+ L LI+ ++ VA ++ +EL+ A SVQ + + K L+ L Sbjct: 262 VKSALSTHLIKKNVAPDVANSLISEIEKELVGSTTANFTSVQDT---AKKSLEKQLIKLL 318 Query: 101 KPFNW-DF----------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149 P N D ++ P+VI VVGVNGVGK+T + KL+ + +V++ A DT Sbjct: 319 TPNNSIDLLKEIQAKKASNNLPYVISVVGVNGVGKSTNLSKLAYWLLQNNYRVLITACDT 378 Query: 150 FRSAAIDQLKIWAD---RTSADFVCSEI------GSD-AAALAYEAFKQAQAKKVDVLII 199 FRS A++QL+ + + S D E+ G+D A +A A K A+ D++++ Sbjct: 379 FRSGAVEQLRTHVNNLTKLSPDQKQIELFEGGYGGADLVAKIATGAIKYAKQNNFDIVLL 438 Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 DTAGR HN++ LMA + + P ++ V +A G +++ Q + F+ G+ Sbjct: 439 DTAGRRHNDTQLMAPLASFAKAAN------PDKIIMVGEALVGTDSVLQAQNFNKAFGSN 492 Query: 260 G----LIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 I++K D G ++ +V IP+ F+G G+ DL Sbjct: 493 RHLDFFIVSKCDTVGDLIGSMVNLVYATGIPILFVGNGQTYTDL 536 >gi|301299298|ref|ZP_07205584.1| signal peptide binding domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300853142|gb|EFK80740.1| signal peptide binding domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 345 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 6/172 (3%) Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 + A D +R AAIDQLKI + D + + ++A+ KK D +IIDTAG Sbjct: 1 MIAADVYRPAAIDQLKILGKDIDVPVFSLGVDVDPVEIVRQGLEEAKDKKNDYVIIDTAG 60 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 RL + LM + + + + P +L +DA TGQNA+ + F+ TG+++ Sbjct: 61 RLQIDEKLMQELSSIKELAQ------PDEILLTVDAMTGQNAVEVAKGFNDQLDVTGVVL 114 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TK+DG RGG + I P+ F+G GE + DL+ F ++ I G D Sbjct: 115 TKLDGDTRGGAALSIRAVTGKPIKFIGQGEKMTDLDVFYPDRMASRILGMGD 166 >gi|213416645|ref|ZP_03349789.1| cell division protein FtsY [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 94 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 42/85 (49%), Positives = 59/85 (69%) Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 +K+LD APH V+ +DA+TGQNA+ Q ++FH G TG+ +TK+DGTA+GG + + Sbjct: 1 MKKLDEEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQ 60 Query: 282 HKIPVYFLGVGEGINDLEPFVAKDF 306 IP+ ++GVGE I DL PF A DF Sbjct: 61 FGIPIRYIGVGERIEDLRPFKADDF 85 >gi|49471607|gb|AAT66125.1| signal recognition particle [Mycoplasma arthritidis] Length = 265 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 67/188 (35%), Positives = 100/188 (53%), Gaps = 17/188 (9%) Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS-----KKMSDAGLKVMLAAGDTFRSAA 154 + P P I++VG+ G GKTT KL+ KK+ L L D +R AA Sbjct: 88 TNPIEISLKKIPTTIMMVGLQGSGKTTTAAKLATFFKKKKLCQNPL---LVGDDIYRPAA 144 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 +QL+ A +T DF E +DA +A EA K+A + D++I+DTAGRL + LM Sbjct: 145 REQLEQLAKQTQTDFFTKE-KNDAIFIAKEAIKRANDNRNDLVIVDTAGRLAIDENLM-- 201 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 ++I + K + H P +L V+DA +GQ+ + ++FH + I+TK+D ARGG Sbjct: 202 -DELINIKKAI--H-PDYILLVVDAMSGQDVINVAKIFHENLNLSATIITKLDSDARGGA 257 Query: 275 LIPIVVTH 282 + I TH Sbjct: 258 ALSI--TH 263 >gi|332652596|ref|ZP_08418341.1| signal recognition particle protein [Ruminococcaceae bacterium D16] gi|332517742|gb|EGJ47345.1| signal recognition particle protein [Ruminococcaceae bacterium D16] Length = 459 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 87/305 (28%), Positives = 152/305 (49%), Gaps = 28/305 (9%) Query: 30 EGITDIISSR--------RLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAK 77 EG+T+ +S+ RL + V+E + ++ L+ +D+ V ++ + ++ K Sbjct: 4 EGLTEKLSAAFKKLRGKGRLSEADVKEAMREIRLALLEADVSYKVVKQFIAQVTEKAVGA 63 Query: 78 DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 DV Q ++ V++ + ++ S S P ++++VG+ G GKTT KL+ Sbjct: 64 DVLEALSPAQMIIKIVNQELTDLMGGTSAKLEI-ASKPPTIVMMVGLQGAGKTTNCAKLA 122 Query: 133 KKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALAYEAFKQAQ 190 M G + +LAA D +R AAI QL++ + D ++G ++ +A A A+ Sbjct: 123 GLMKKQNGKRPLLAACDIYRPAAIKQLEVVGQQL--DLPVFQMGQANPVDIAKAAIAHAK 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 D++ +DTAGRLH + LM +R +K P +L V+DA GQ+A+ + Sbjct: 181 EHGNDMVFLDTAGRLHVDEELM----DELRAIKA--AVEPTEILLVVDAMIGQDAVNAAK 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G+++TK+DG ARGG + I P+ F+GVGE ++ +E F ++ I Sbjct: 235 AFDDALDIDGVVLTKLDGDARGGAALSIKAVTGKPIKFVGVGEKLDQIEVFHPDRMASRI 294 Query: 311 TGCLD 315 G D Sbjct: 295 LGMGD 299 >gi|302692290|ref|XP_003035824.1| hypothetical protein SCHCODRAFT_74228 [Schizophyllum commune H4-8] gi|300109520|gb|EFJ00922.1| hypothetical protein SCHCODRAFT_74228 [Schizophyllum commune H4-8] Length = 645 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 110/227 (48%), Gaps = 31/227 (13%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW--------- 161 P+ I VGVNGVGK+T + K+ + GL+V++AA DTFRS A++QL++ Sbjct: 424 PYTIAFVGVNGVGKSTNLSKVCFWLIQNGLRVLIAACDTFRSGAVEQLRVHVRNLGMLGV 483 Query: 162 ---AD-RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 AD + + G DAAA+ EA + A+ DV++IDTAGR+ +N LM + K Sbjct: 484 NGAADSKGRVELFERGYGKDAAAIGKEAIQYAKDNDFDVVLIDTAGRMQDNEPLMRALAK 543 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-----------AGTTGLIMTKM 266 ++ V + P ++ V +A G A+ Q+ F G G+++TK Sbjct: 544 LVAV------NNPDKIVFVGEALVGNEAVDQLTKFDRALRDFSSMSGVGRGIDGMLVTKW 597 Query: 267 DGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 D + G + + P+ F+G G+ DL ++ I G Sbjct: 598 DTVDDKVGAALSMTYITGQPILFVGCGQTYTDLRQLRVQNVVQAILG 644 >gi|56758718|gb|AAW27499.1| SJCHGC06360 protein [Schistosoma japonicum] Length = 659 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 81/320 (25%), Positives = 154/320 (48%), Gaps = 45/320 (14%) Query: 17 LTKGFAST---SLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73 L GFAS+ L++ G +++ + + E+L + L+ ++ +++A+++ + + Sbjct: 333 LNGGFASSLLRGLRIAGGTGRVLTQEDITPCL-EQLRERLVSKNVAMSIAERVCSSVSDR 391 Query: 74 RYAKDVSV-----QRVLYDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGV 122 + RV + ++ ++L+ L + RP+ I+ GVNGV Sbjct: 392 LVGTSLGTFERIYPRVKASLEDVCSRILVSGRRVDVLRDALDARTPGRPYSIVFCGVNGV 451 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS----ADFVCSEI---- 174 GK+T + K++ + + +V++AA DTFRS A++QL+ + + AD +I Sbjct: 452 GKSTNLAKIAFWLIEKNFRVLIAACDTFRSGAVEQLRTHVRKLNYIHPADQHGGQIMVEL 511 Query: 175 -----GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 G DAA++A A A+ + DV+++DTAGR+ +N LM + +I+ + Sbjct: 512 YEQGYGRDAASIARSAINYARDRHFDVVLVDTAGRMQDNEPLMRALALLIQT------NQ 565 Query: 230 PHSVLQVLDATTGQNALRQVEMF------HAVAG----TTGLIMTKMDG-TARGGGLIPI 278 P VL V +A G A+ Q+ F H+ + G+++TK D + G I + Sbjct: 566 PDLVLFVGEALVGNEAVDQLVKFNQSLADHSYSDHPRCIDGIVLTKFDTIDDKVGAAISM 625 Query: 279 VVTHKIPVYFLGVGEGINDL 298 P+ F+G G+ +DL Sbjct: 626 ACISNQPIVFVGTGQTYSDL 645 >gi|50556754|ref|XP_505785.1| YALI0F23375p [Yarrowia lipolytica] gi|4838528|gb|AAD31027.1|AF132597_1 signal sequence receptor alpha subunit [Yarrowia lipolytica] gi|49651655|emb|CAG78596.1| YALI0F23375p [Yarrowia lipolytica] Length = 557 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 132/285 (46%), Gaps = 57/285 (20%) Query: 62 VAQKIVEELLTKRYAKDVSV----------------------QRVLYDVSELIHKMLMPL 99 V K+ E+L+ K AK+V+V Q V +++ + K+L P Sbjct: 268 VTAKVEEQLMKKNVAKEVAVHLCDQVSRSLVGCTTNSWTTVEQTVQQAMADALRKILTPS 327 Query: 100 SKPFNWDFSH-----------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 + + D H RP+VI VVGVNGVGK+T + K+ + +++++AA D Sbjct: 328 A---SLDLLHEVQRHKKLGGGRPYVISVVGVNGVGKSTNLSKIGFWLLQNKMRLLVAACD 384 Query: 149 TFRSAAIDQLKIWADRTS----------ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 TFRS A++QL + +R S + G D A A +A + + DV++ Sbjct: 385 TFRSGAVEQLGVHVNRLSELAGRQGTGEVELFAQGYGKDPAHTAEKAVEYGEKHGFDVVL 444 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 IDTAGR H++ LM + K + + P+ ++ V +A G ++++Q F+ G Sbjct: 445 IDTAGRRHSDKRLMGDLEKFAKRAR------PNKIIMVGEALVGTDSVQQARNFNDAFGK 498 Query: 259 TG----LIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 +++K D G ++ + IPV F+G G+ DL Sbjct: 499 DRNLDFFLISKCDTVGDMIGSIVNMTYATNIPVLFVGTGQHYTDL 543 >gi|330813439|ref|YP_004357678.1| signal recognition particle, subunit Ffh SRP54 [Candidatus Pelagibacter sp. IMCC9063] gi|327486534|gb|AEA80939.1| signal recognition particle, subunit Ffh SRP54 [Candidatus Pelagibacter sp. IMCC9063] Length = 381 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 102/207 (49%), Gaps = 9/207 (4%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P ILVVG+ G GKTT KL+K + K ML + D +R AA QL++ + S Sbjct: 28 PIKILVVGLQGSGKTTTSAKLAKYLEKQYSKKSMLVSLDIYRPAAQRQLEVLGNSNSIKT 87 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH- 228 + G ++ A A DV+I DTAGR + +M+ LK+L+ Sbjct: 88 LPIMDGQFPLEISKRAINAASLSGEDVIIFDTAGRTQIDQ-------QMMMELKQLENDI 140 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P ++ V D+ TGQ+A+ F + +I+T++DG +GG + + T P+ F Sbjct: 141 QPSEIILVADSLTGQDAVNIASEFKKTVSLSSIILTRIDGDGKGGAALSMKSTTGCPIKF 200 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 LG GEGI+++E F + I G D Sbjct: 201 LGTGEGIDEMEVFHPDRIANRILGMGD 227 >gi|207108639|ref|ZP_03242801.1| signal recognition particle receptor [Helicobacter pylori HPKX_438_CA4C1] Length = 186 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 97/174 (55%), Gaps = 20/174 (11%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQRVL-----YDVSE 90 ++ ++ +EELE++LI DI + + +++ L L +V++ R + YD + Sbjct: 19 EKKRENIPKEELEEILIGFDIQYDLIESLLQHLGDLVTPKQLEVALLRFVRGESYYDKTR 78 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 L + +P V L+VGVNG GKTT I KL+K K +L AGDTF Sbjct: 79 L-------------KTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKTLLGAGDTF 125 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 R+AA+ QL++W ++ + + ++ GSD ++LAY + A AK +D + IDTAGR Sbjct: 126 RAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGR 179 >gi|85714453|ref|ZP_01045441.1| Signal recognition particle protein [Nitrobacter sp. Nb-311A] gi|85698900|gb|EAQ36769.1| Signal recognition particle protein [Nitrobacter sp. Nb-311A] Length = 511 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P I++VG+ G GKTT KL++++++ KV++A+ D +R AA++QL + Sbjct: 100 PITIMMVGLQGSGKTTTTAKLARRLTERDKRKVLMASLDIYRPAAMEQLAVLGRDLDIKT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + +G +A A + + DV+++DTAGR + +M+ + + H Sbjct: 160 LPIVVGQKPEQIARRALEAGKLGGYDVVLLDTAGRTTLDEEMMSEAANI-----KTAAH- 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH VL V D+ TGQ+A+ F G TG+++T++DG RGG + + P+ + Sbjct: 214 PHEVLLVADSLTGQDAVNLARSFDERVGLTGIVLTRVDGDGRGGAALSMRQVTGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE + LE F + I G D Sbjct: 274 GTGEKTDALEDFHPSRIAGRILGMGD 299 >gi|309806528|ref|ZP_07700531.1| Signal peptide binding domain protein [Lactobacillus iners LactinV 03V1-b] gi|308167071|gb|EFO69247.1| Signal peptide binding domain protein [Lactobacillus iners LactinV 03V1-b] Length = 342 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/173 (36%), Positives = 88/173 (50%), Gaps = 7/173 (4%) Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 ML AGD +R AAIDQLK + V SE +D A+ QA D +IIDTA Sbjct: 1 MLIAGDIYRPAAIDQLKTIGASLNVP-VYSENNTDVVAIVENGLMQADRNHNDYVIIDTA 59 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GRL + LM + ++ V P +++ V DA TGQ A E F++ TGLI Sbjct: 60 GRLEIDDQLMDELKNIVDVAH------PENIILVADAMTGQVAATVAEGFNSKLKLTGLI 113 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +TK+DG RGG + I +P+ F G GE + +L+ F ++ I G D Sbjct: 114 LTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTELDTFHPDRMASRILGMGD 166 >gi|312135833|ref|YP_004003171.1| flagellar biosynthetic protein flhf [Caldicellulosiruptor owensensis OL] gi|311775884|gb|ADQ05371.1| flagellar biosynthetic protein FlhF [Caldicellulosiruptor owensensis OL] Length = 371 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 84/313 (26%), Positives = 150/313 (47%), Gaps = 26/313 (8%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGIT-DIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 S ++ I++L K S LKE I + S++ + R+ D++ + I V +I Sbjct: 75 SLQMTQIKELEKKIDSLEKALKEVIKKEQEESQQTKEASRKNFLDVMRENLIKNGVENEI 134 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 V+ LL+ + D S+ ++ + I ML + P ++D S P ++ VG GVGKTT Sbjct: 135 VDILLS-NVSGDGSINTIVNSMYREIKNMLGS-AAPLSFD-SKFPRIVFFVGPTGVGKTT 191 Query: 127 VIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWAD----RTSADFVCSEIGSDAAAL 181 I K++ K M + G KV DT+R AA++QLK +A+ +T + E +L Sbjct: 192 TIAKIAAKLMFENGKKVGFITADTYRIAAVEQLKTYAEIMNIKTKVWYEVDEYDGIIESL 251 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 A DV+++DTAGR H N M + + P + +L ATT Sbjct: 252 A----------DSDVVLVDTAGRSHKNQEHMDELKAYVA------KANPDEIFLLLSATT 295 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEP 300 + ++V ++ +I+TK+D + G ++ I + P+ ++ G+ + +D+E Sbjct: 296 QPSVFKEVVNTYSFLDNYKVIITKVDEVSTYGNILNIRYFTQKPIAYITTGQNVPDDIEQ 355 Query: 301 FVAKDFSAVITGC 313 F + ++ +I G Sbjct: 356 FNPEQYAKLIIGS 368 >gi|316972676|gb|EFV56341.1| signal recognition particle receptor subunit alpha [Trichinella spiralis] Length = 665 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 85/286 (29%), Positives = 140/286 (48%), Gaps = 36/286 (12%) Query: 44 GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSE--LIHKMLM 97 G E++++ LI ++ VA K+ + + T V + V+ D L+ +L Sbjct: 373 GPLEKMKEQLIGKNVAAEVADKLCQSVRTSLRGSVVGQFSLIAGVVRDAFRQCLVQLLLK 432 Query: 98 P------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 P L F S R + I+ GVNGVGK+T + K++ +++ G +V++AA DTFR Sbjct: 433 PERNSCLLRDIFQARESARCYSIVFCGVNGVGKSTNLAKVAFWLNENGFRVLIAACDTFR 492 Query: 152 SAAIDQLKI---WADRTSADFVC---SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 + A++QL+ + D V G DAAA+A A A+A +DV+++DTAGR+ Sbjct: 493 AGAVEQLRTHVRYLDELHPGLVQLYEQGYGKDAAAVAASAISYAEANNLDVVLVDTAGRM 552 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV---------- 255 +N LM +GK+IRV + P VL V +A G A+ Q++ F Sbjct: 553 QDNEPLMRALGKLIRV------NEPDLVLFVGEALVGNEAVDQLQKFSRALIDCAAVDQQ 606 Query: 256 -AGTTGLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 G+++TK D + G + + P+ F+G G+ DL+ Sbjct: 607 DTPIDGIMLTKFDTIDDKVGAAVSMTYITGKPILFVGTGQTYKDLK 652 >gi|92119038|ref|YP_578767.1| signal recognition particle protein [Nitrobacter hamburgensis X14] gi|91801932|gb|ABE64307.1| signal recognition particle subunit FFH/SRP54 (srp54) [Nitrobacter hamburgensis X14] Length = 511 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P I++VG+ G GKTT KL++++++ KV++A+ D +R AA++QL + Sbjct: 100 PITIMMVGLQGSGKTTTTAKLARRLTERDKRKVLMASLDIYRPAAMEQLAVLGRDLDIQT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + + DV+++DTAGR ++ +M+ I+ R Sbjct: 160 LPILAGQKPEQIARRALEAGKLGGYDVVLLDTAGRTTLDNEMMSEAAN-IKAAAR----- 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH VL V D+ TGQ+A+ F G TG+++T++DG RGG + + P+ + Sbjct: 214 PHEVLLVADSLTGQDAVNLARSFDERVGLTGIVLTRVDGDGRGGAALSMRQVTGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE + LE F + I G D Sbjct: 274 GTGEKTDALEDFHPSRIAGRILGMGD 299 >gi|222834682|gb|EEE73145.1| predicted protein [Populus trichocarpa] Length = 250 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 75/258 (29%), Positives = 130/258 (50%), Gaps = 32/258 (12%) Query: 28 LKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKI--------VEELLTKRY 75 L+ I I+SS+ +D+ + EL + LIRSD+ V + ++I V E+ Sbjct: 9 LRSAIKKIVSSQGVDEKLIHELALDVQRALIRSDVDVRLVKEIAGRLEERCVGEVPPPGL 68 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLS 132 ++ + ++LYD + K+L S +FS +P + +L++G+ G GK+T+ KL+ Sbjct: 69 SRKDHIVKILYDE---LAKLLGGES-----EFSFKPGRTNKVLMLGIQGSGKSTITAKLA 120 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 K ++ G K + DT+R A+ QL+ +R++ + E SDA A+ + Sbjct: 121 KLLTRQGYKTGVVGADTYRPGALVQLRTMCERSNVEVYGEEGESDAPAVVRRGLRHF-GD 179 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEM 251 DV+++DTAGR H G+++ +KR+ A P L V+D T G Q E Sbjct: 180 SCDVILVDTAGR-HKEE------GELLDEMKRIGKAAEPDLALLVIDGTIGNRCYAQAEA 232 Query: 252 FHAVAGTTGLIMTKMDGT 269 FH G+++TK+D + Sbjct: 233 FHKTVPVGGIVVTKLDSS 250 >gi|154346124|ref|XP_001568999.1| signal recognition particle receptor like protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134066341|emb|CAM44132.1| putative signal recognition particle receptor like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 601 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 81/282 (28%), Positives = 134/282 (47%), Gaps = 34/282 (12%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-----LIHKMLMPLSKP 102 +L + LI ++ V VA+++ + + K + LY E + ++L P + Sbjct: 320 DLREKLIAKNVAVEVAEQVCKSVEVSLAGKRLGTFDSLYKTVEDAMTASLRRILQP-KRE 378 Query: 103 FNW-------DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 N +H+P+ I++ GVNGVGK+T + K++ + V+LAAGDTFR A+ Sbjct: 379 VNLLRDVAVAKAAHKPYSIILCGVNGVGKSTSLAKIAYWLQQNDNSVLLAAGDTFRHGAV 438 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 +QL++ G+D +A+A A A + DV+IIDTAGR+ ++ M + Sbjct: 439 EQLEVHGRCLGVPVFQLGYGTDPSAVAAAAIVHASKQHTDVVIIDTAGRMQDHESRMRAL 498 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-----------AGTTGLIMT 264 K+I + P VL V +A G N + Q+ F+ G G+++T Sbjct: 499 AKLIH------DNQPDLVLFVGEALVGNNGIDQLRKFNQCLVDFAPVGSRSRGIDGIVLT 552 Query: 265 KMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDL---EPFV 302 K D + G + +V P+ F+GVG+ DL EP V Sbjct: 553 KFDTIDDKVGAALSMVYELGQPIVFVGVGQTYQDLKVIEPEV 594 >gi|299133089|ref|ZP_07026284.1| signal recognition particle protein [Afipia sp. 1NLS2] gi|298593226|gb|EFI53426.1| signal recognition particle protein [Afipia sp. 1NLS2] Length = 510 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 9/207 (4%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P I++VG+ G GKTT KL+++++ K V++A+ D +R AA +QL + S + Sbjct: 100 PIAIMMVGLQGSGKTTTTAKLARRLTQRDKKKVLMASLDVYRPAAQEQLAVLGRDLSIET 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ D++++DTAGR + +M+R + A Sbjct: 160 LPVVAGQMPPQIAQRALQAAKLGGYDIVLLDTAGRTTLDE-------EMMREAATVKTAA 212 Query: 230 -PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 PH VL V D+ TGQ+A+ F G TG+++T++DG RGG + + P+ Sbjct: 213 NPHEVLLVADSLTGQDAVNLARAFDERVGLTGIVLTRVDGDGRGGAALSMRAVTGKPIKL 272 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +G GE + LE F + I G D Sbjct: 273 IGTGEKTDALEDFHPSRIAGRILGMGD 299 >gi|148251976|ref|YP_001236561.1| signal recognition particle subunit FFH/SRP54 (srp54) [Bradyrhizobium sp. BTAi1] gi|146404149|gb|ABQ32655.1| signal recognition particle subunit FFH/SRP54 (srp54) [Bradyrhizobium sp. BTAi1] Length = 515 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 101/206 (49%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P I++VG+ G GKTT KL+++M KV++A+ D +R AA++QL + Sbjct: 100 PVPIMMVGLQGSGKTTTTAKLARRMVQRDKRKVLMASLDVYRPAAMEQLAVLGRDLDIPT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ DV+++DTAGR + +M ++ V Sbjct: 160 LPIVAGQMPPQIARRAIEAAKLGGYDVVLLDTAGRTTLDEDMMKEAAEIKAVAN------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH VL V D+ TGQ+A+ F G TG+ +T++DG RGG + + P+ L Sbjct: 214 PHEVLLVADSLTGQDAVNLARAFDQRVGLTGIALTRIDGDGRGGAALSMRAVTGKPIKLL 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE + LE F + I G D Sbjct: 274 GTGEKTDALEDFYPSRIAGRILGMGD 299 >gi|290994923|ref|XP_002680081.1| predicted protein [Naegleria gruberi] gi|284093700|gb|EFC47337.1| predicted protein [Naegleria gruberi] Length = 470 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 107/203 (52%), Gaps = 9/203 (4%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 VI+V G+ G GKTT KL+ ++ +V+L + DT+R AA QL+ A + + + Sbjct: 96 VIMVTGIQGSGKTTSSAKLALQLKRKENRRVLLVSLDTYRPAAQMQLQTLAQQIQVESLP 155 Query: 172 SEIGSDAAALAYEAFKQ--AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + +A A + ++ D +I DTAGR+H + LM + ++ +++ Sbjct: 156 IIPEQNPIEIAKRAMEYVGPNGEQFDTVIFDTAGRMHIDEQLMTELEELRAIVQ------ 209 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P+ L V D+ G +A+ FH G +G+++T+MDGT+ GG I + + V ++ Sbjct: 210 PNETLLVADSMLGNDAVNIATQFHDRVGLSGIVLTRMDGTSSGGCAISMKQVVGLSVKYI 269 Query: 290 GVGEGINDLEPFVAKDFSAVITG 312 G+GE ++DLE F + + I G Sbjct: 270 GIGERMDDLETFDPQSLAKRILG 292 >gi|146337525|ref|YP_001202573.1| signal recognition particle protein [Bradyrhizobium sp. ORS278] gi|146190331|emb|CAL74327.1| 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA, ffh family (fifty four homolog) [Bradyrhizobium sp. ORS278] Length = 515 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 101/206 (49%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P I++VG+ G GKTT KL+++M KV++A+ D +R AA++QL + Sbjct: 100 PVPIMMVGLQGSGKTTTTAKLARRMVQRDKRKVLMASLDVYRPAAMEQLAVLGRDLDIPT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + A+ DV+++DTAGR + +M ++ V Sbjct: 160 LPIVAGQMPPQIARRAIEAAKLGGYDVVLLDTAGRTTLDEDMMKEAAEIKAVAN------ 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH VL V D+ TGQ+A+ F G TG+ +T++DG RGG + + P+ L Sbjct: 214 PHEVLLVADSLTGQDAVNLARSFDQRVGLTGIALTRIDGDGRGGAALSMRAVTGKPIKLL 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE + LE F + I G D Sbjct: 274 GTGEKTDALEDFYPSRIAGRILGMGD 299 >gi|242010419|ref|XP_002425965.1| signal recognition particle receptor alpha subunit, putative [Pediculus humanus corporis] gi|212509956|gb|EEB13227.1| signal recognition particle receptor alpha subunit, putative [Pediculus humanus corporis] Length = 615 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 76/285 (26%), Positives = 132/285 (46%), Gaps = 35/285 (12%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP- 102 V ++L+D LI ++ +A K+ + + K K + + R+ V +++ L+ + P Sbjct: 333 VLDKLKDHLIAKNVAADIAGKLCDSVAVKLQGKILGTFDRIATTVEATLNESLVQILSPR 392 Query: 103 ---------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153 F RP+V++ GVNGVGK+T + K+ + + +V++AA DTFR+ Sbjct: 393 RRVDILRDAFEAKKQSRPYVMVFCGVNGVGKSTNLAKICFWLIENKFRVLIAACDTFRAG 452 Query: 154 AIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 A++QL+ +A G DAA +A EA A+ +D++++D Sbjct: 453 AVEQLRTHTRHLNALHPPEKNNNLQMVQLYEKGYGKDAAGIAMEAIGYARDSNIDIVLVD 512 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGR+ +N LM + K+I+V ++P V V AL G Sbjct: 513 TAGRMQDNEPLMKALAKLIKV------NSPDLVXXV----KFNQALADFSQSINPHLIDG 562 Query: 261 LIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 +++TK D + G I + P+ F+G G+ DL+ AK Sbjct: 563 IVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAK 607 >gi|269302996|gb|ACZ33096.1| signal recognition particle protein [Chlamydophila pneumoniae LPCoLN] Length = 448 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 104/211 (49%), Gaps = 17/211 (8%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 P +IL+ G+ G GKTT KL+ + + KV++ D R AA+DQLKI +T A+ Sbjct: 99 PSIILLCGLQGAGKTTTAAKLADYVIKNKKAKKVLVVPCDLKRFAAVDQLKILVAQTKAE 158 Query: 169 FVCSE----IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 F S+ I ALAY A+ D +I+DTAGRL+ ++ LM + + +V Sbjct: 159 FYQSQENKPIDVVVKALAY-----AKENGHDFVILDTAGRLNIDNELMEELTAIQKV--- 210 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 + L V++ GQ+ L V+ F TG+I++ DG AR G + I Sbjct: 211 ---SQANERLFVMNVAMGQDVLATVQAFDQSLDLTGVILSMTDGDARAGAVFSIKHVLGK 267 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F G GE I DL F + + I G D Sbjct: 268 PIKFEGCGERIQDLRSFDPQSMAERILGMGD 298 >gi|218679901|ref|ZP_03527798.1| signal recognition particle protein [Rhizobium etli CIAT 894] Length = 388 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 94/175 (53%), Gaps = 6/175 (3%) Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 KV++A+ DT R AA +QL+ + S D + G +A A + A+ DV+I+D Sbjct: 14 KVLMASLDTRRPAAQEQLRQLGAQASIDTLPVISGQSPTDIAARAVQAARLGGHDVVILD 73 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGR H + LM +M + K+ +PH +L V D+ TGQ+A+ F G TG Sbjct: 74 TAGRTHIDEPLMV---EMADIKKKSNPH---EILLVADSLTGQDAVNLARNFDERVGITG 127 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 L++T+MDG RGG + + P+ +GVGE +++LE F + + I G D Sbjct: 128 LVLTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMSELEEFHPRRIADRILGMGD 182 >gi|209883424|ref|YP_002287281.1| signal recognition particle protein [Oligotropha carboxidovorans OM5] gi|209871620|gb|ACI91416.1| signal recognition particle protein [Oligotropha carboxidovorans OM5] Length = 515 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 9/207 (4%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P I++VG+ G GKTT KL+++++ K +++A+ D +R AA +QL + S + Sbjct: 100 PIAIMMVGLQGSGKTTTTAKLARRLTQRDKKKILMASLDVYRPAAQEQLAVLGRDLSVET 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + + DV+++DTAGR + +M+R + A Sbjct: 160 LPVVAGQMPQQIAQRALQAGKLGGYDVVLLDTAGRTTLDE-------EMMREAAAVKTAA 212 Query: 230 -PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 PH VL V DA TGQ+A+ F G TG+++T++DG RGG + + P+ Sbjct: 213 NPHEVLLVADALTGQDAVNLARAFDERVGLTGIVLTRVDGDGRGGAALSMRAVTGKPIKL 272 Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315 +G GE + LE F ++ I G D Sbjct: 273 IGTGEKTDALEDFHPSRIASRILGMGD 299 >gi|224476349|ref|YP_002633955.1| hypothetical protein Sca_0860 [Staphylococcus carnosus subsp. carnosus TM300] gi|222420956|emb|CAL27770.1| truncated signal recognition particle homolog (fragment 1) [Staphylococcus carnosus subsp. carnosus TM300] Length = 271 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 116/232 (50%), Gaps = 13/232 (5%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107 L+ +D+ V + ++ + + DV Q+V+ V + + +++ + N Sbjct: 39 LLEADVNFKVVKSFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTQLMGGENSTINM-A 97 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + P V+++VG+ G GKTT GKL+ M K +L A D +R AAIDQL+ + + Sbjct: 98 NKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPLLVAADIYRPAAIDQLETVGKQLN 157 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + A K A+ + +D +IIDTAGRLH + LM+ + ++ + K Sbjct: 158 LPVYSEGDQVKPQQIVENALKYAKEEHLDFVIIDTAGRLHIDEALMSELTEVKEISK--- 214 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 P ++ V+DA TGQ+A+ + F TG+ +TK+DG RGG + I Sbjct: 215 ---PDEIMLVVDAMTGQDAVNVAQSFDDQLDVTGVTLTKLDGDTRGGAALSI 263 >gi|321253682|ref|XP_003192816.1| signal recognition particle binding protein [Cryptococcus gattii WM276] gi|317459285|gb|ADV21029.1| signal recognition particle binding protein, putative [Cryptococcus gattii WM276] Length = 671 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/264 (28%), Positives = 120/264 (45%), Gaps = 36/264 (13%) Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 Q ++ LT+ S +L ++ L L + D P+ + VGVNGVG Sbjct: 401 QSVLSTSLTRVLTPKTSTD-ILLEIQRKRSSHLATLGTTSSPDSGPDPYTLTFVGVNGVG 459 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-------------DFV 170 K+T + K+ + GLKV++AA DTFRS A++QL++ A + Sbjct: 460 KSTNLSKVCFWLLQNGLKVLIAACDTFRSGAVEQLRVHVRNLGALGEEMGQGKGKRIELF 519 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 G DAA +A +A A+ DV++IDTAGR+ +N LM + K++ V + P Sbjct: 520 ERGYGKDAAGIAKDAIAYAKEHAFDVVLIDTAGRMQDNEPLMRALAKLVTV------NNP 573 Query: 231 HSVLQVLDATTGQNALRQVEMFH------------AVA---GTTGLIMTKMDGT-ARGGG 274 ++ V +A G A+ Q+ F VA G G+I+TK D + G Sbjct: 574 DKIVFVGEALVGNEAVDQLTKFDRALRDFSGAGVGGVARKRGIDGIILTKFDTIDDKVGA 633 Query: 275 LIPIVVTHKIPVYFLGVGEGINDL 298 + + P+ F+G G+ DL Sbjct: 634 ALSMTYITGQPILFVGCGQTYTDL 657 >gi|315651824|ref|ZP_07904828.1| signal recognition particle protein [Eubacterium saburreum DSM 3986] gi|315485954|gb|EFU76332.1| signal recognition particle protein [Eubacterium saburreum DSM 3986] Length = 451 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 86/306 (28%), Positives = 156/306 (50%), Gaps = 19/306 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F S S KL+ ++ RL +D VR L+++ L+ +D+ V + ++ + K Sbjct: 3 FESLSEKLQNVFKNLRGKGRLSEDDVRIGLKEVRLALLEADVSFKVVKDFIKGIQEKATG 62 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V Q+V+ V+E + ++ + S VI++ G+ G GKTT KL Sbjct: 63 SNVLNSLTPAQQVIKIVNEEMVSLMGSETTELKIKPSGDITVIMMAGLQGAGKTTTTAKL 122 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD--AAALAYEAFKQA 189 + K+ G +L D +R AAI+QLK ++ D ++G++ +A +A + A Sbjct: 123 AAKLKKKGNSPVLVGCDIYRPAAIEQLKRNGEKV--DVPVFDMGTNHKPVEIAKKALEYA 180 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + +++ +DTAGRLH + +M ++I + ++ ++ V+DA TGQ+A+ Sbjct: 181 KENHHNIVFLDTAGRLHIDEDMM---NELIEIKDNVNVD---DIILVVDAMTGQDAVNVA 234 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F+ TG+I+TK+DG RGG + + P+ ++G+GE ++DLE F ++ Sbjct: 235 ETFNEKLDITGVILTKLDGDTRGGAALSVRAVTGKPILYVGMGEKLSDLEQFYPDRMASR 294 Query: 310 ITGCLD 315 I G D Sbjct: 295 ILGMGD 300 >gi|75676963|ref|YP_319384.1| Signal recognition particle protein [Nitrobacter winogradskyi Nb-255] gi|74421833|gb|ABA06032.1| signal recognition particle subunit FFH/SRP54 (srp54) [Nitrobacter winogradskyi Nb-255] Length = 516 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 7/206 (3%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I++VG+ G GKTT KL++++++ KV++A+ D +R AA++QL + Sbjct: 100 PVIIMMVGLQGSGKTTTTAKLARRLTERDKRKVLMASLDIYRPAAMEQLAVLGRDLDIKT 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G +A A + + DV+++DTAGR + +M+ + + H Sbjct: 160 LPIVAGQKPEQIARRALEAGKLGGYDVVLLDTAGRTTLDEDMMSEAASI-----KTAAH- 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 PH VL V D+ TGQ+A+ F G TG+++T++DG RGG + + P+ + Sbjct: 214 PHEVLLVADSLTGQDAVNLARSFDERVGLTGIVLTRVDGDGRGGAALSMRQVTGKPIKLI 273 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE + LE F + I G D Sbjct: 274 GTGEKTDALEDFHPSRIAGRILGMGD 299 >gi|302872551|ref|YP_003841187.1| flagellar biosynthetic protein FlhF [Caldicellulosiruptor obsidiansis OB47] gi|302575410|gb|ADL43201.1| flagellar biosynthetic protein FlhF [Caldicellulosiruptor obsidiansis OB47] Length = 371 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 85/313 (27%), Positives = 149/313 (47%), Gaps = 26/313 (8%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGIT-DIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 S ++ I++L K S LKE I + S+ + R+ D++ + I V +I Sbjct: 75 SLQMTQIKELEKKIDSLEKALKEVIKKEQEESQHTKEASRKNFLDVMRENLIKNGVENEI 134 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 V+ LL+ + D S+ ++ + I ML + P ++D S P ++ VG GVGKTT Sbjct: 135 VDILLS-NVSGDGSINTIVNSMYREIKNMLGS-AAPLSFD-SKFPKIVFFVGPTGVGKTT 191 Query: 127 VIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWAD----RTSADFVCSEIGSDAAAL 181 I K++ K M + G +V DT+R AA++QLK +A+ +T + E +L Sbjct: 192 TIAKIAAKLMFEDGKRVGFITADTYRIAAVEQLKTYAEIMNIKTKVWYEVDEYDGIIESL 251 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 A DV+++DTAGR H N M + + P V +L ATT Sbjct: 252 A----------DSDVVLVDTAGRSHKNQEHMDELKAYVA------KANPDEVFLLLSATT 295 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEP 300 + ++V ++ +I+TK+D + G ++ I + P+ ++ G+ + +D+E Sbjct: 296 QPSVFKEVVNTYSFLDNYKVIVTKVDEVSAYGNILNIRYFTQKPIAYITTGQNVPDDIEQ 355 Query: 301 FVAKDFSAVITGC 313 F + F+ +I G Sbjct: 356 FNPEQFAKLIIGS 368 >gi|146103857|ref|XP_001469660.1| signal recognition particle receptor like protein [Leishmania infantum] gi|134074030|emb|CAM72771.1| putative signal recognition particle receptor like protein [Leishmania infantum JPCM5] Length = 605 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 82/281 (29%), Positives = 134/281 (47%), Gaps = 32/281 (11%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-----LIHKMLMP---- 98 +L + LI ++ V VA+ + + + K + LY E + ++L P Sbjct: 324 DLREKLIAKNVAVEVAEHVCKSVEASLAGKRLGTFDSLYKTVEDAMMASLRRILQPKCEV 383 Query: 99 --LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 L + +P+ I++ GVNGVGK+T + K++ + G V+LAAGDTFR A++ Sbjct: 384 NLLRDVAAAKAAGKPYSIVLCGVNGVGKSTSLAKITYWLQQNGNSVLLAAGDTFRHGAVE 443 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL + A G+D +A+A A QA + +DV++IDTAGR+ ++ M + Sbjct: 444 QLGVHGRCLGAPVFQLGYGTDPSAVAAAAMAQASKQHIDVVMIDTAGRMQDHESRMRALA 503 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-----------AGTTGLIMTK 265 K+I + P VL V +A G N + Q+ F+ G G+++TK Sbjct: 504 KLIH------DNQPDLVLFVGEALVGNNGIDQLRKFNQCLVDFAPVGSRSRGIDGIVLTK 557 Query: 266 MDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDL---EPFV 302 D + G + +V P+ F+GVG+ DL EP V Sbjct: 558 FDTIDDKVGAALSMVYELGQPIVFVGVGQTYQDLKVIEPEV 598 >gi|322503724|emb|CBZ38810.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 605 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 82/281 (29%), Positives = 134/281 (47%), Gaps = 32/281 (11%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-----LIHKMLMP---- 98 +L + LI ++ V VA+ + + + K + LY E + ++L P Sbjct: 324 DLREKLIAKNVAVEVAEHVCKSVEASLAGKRLGTFDSLYKTVEDAMMASLRRILQPKCEV 383 Query: 99 --LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 L + +P+ I++ GVNGVGK+T + K++ + G V+LAAGDTFR A++ Sbjct: 384 NLLRDVAAAKAAGKPYSIVLCGVNGVGKSTSLAKITYWLQQNGNSVLLAAGDTFRHGAVE 443 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL + A G+D +A+A A QA + +DV++IDTAGR+ ++ M + Sbjct: 444 QLGVHGRCLGAPVFQLGYGTDPSAVAAAAMAQASKQHIDVVMIDTAGRMQDHESRMRALA 503 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-----------AGTTGLIMTK 265 K+I + P VL V +A G N + Q+ F+ G G+++TK Sbjct: 504 KLIH------DNQPDLVLFVGEALVGNNGIDQLRKFNQCLVDFAPVGSRSRGIDGIVLTK 557 Query: 266 MDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDL---EPFV 302 D + G + +V P+ F+GVG+ DL EP V Sbjct: 558 FDTIDDKVGAALSMVYELGQPIVFVGVGQTYQDLKVIEPEV 598 >gi|167045712|gb|ABZ10359.1| putative SRP54-type protein, GTPase domain protein [uncultured marine bacterium HF4000_APKG2098] Length = 448 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 140/291 (48%), Gaps = 16/291 (5%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76 LT F LK+ + ++ ++D+G+R+ + L+ +D+ + VA+++++ + K Sbjct: 5 LTSKFEEIFSSLKKAPS--LNEAQVDEGLRK-IRQALLEADVALPVAKELIKNIKPKAVG 61 Query: 77 KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +++ Q ++ V + + K+L N + S P +++VG+ G GKTT KL Sbjct: 62 QEIIKSTTPGQMIVKVVFDEVVKILGDTKSELNLN-SVPPICVMLVGLQGSGKTTTAAKL 120 Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 +K + + K ++ + D +R AA +QL I ++ S + + A A Sbjct: 121 AKYLEKNNKKKSLMVSLDVYRPAAQEQLNILGEKNSIQTLPIVKDQLPINIVKRALNAAS 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 D +I DTAGR + +M I K I+ L P + V D+ TGQ A+ + Sbjct: 181 LSGADAIIFDTAGRTQIDLSMMNEI-KEIKSLAN-----PIETILVADSLTGQVAVNVAQ 234 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 F TG+I+T++DG RGG + + P+ F+G GE I L+ F Sbjct: 235 EFKKAVDLTGIILTRVDGDGRGGAALSMKFATNTPIKFMGTGEKIEQLDVF 285 >gi|319407814|emb|CBI81465.1| signal recognition particle protein [Bartonella sp. 1-1C] Length = 515 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 13/209 (6%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRT---S 166 P VI++VG+ G GKTT KL+K++ D KV++A+ DT R AA +QL+ ++ S Sbjct: 100 PVVIMLVGLQGSGKTTTTAKLAKRLIDKHNKKVLVASLDTRRPAAQEQLRQLGEQVQVPS 159 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + + D +A A +A A+ DV+++DTAGR H + LM + K I+ + Sbjct: 160 LPIIPDQSPVDISARAVQA---AKLGGYDVVLLDTAGRNHIDEALMLEL-KEIKAASQ-- 213 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P+ ++ V D+ TGQ+A+ F G TG+I+T+M+ RGG + + P+ Sbjct: 214 ---PYEIMLVADSLTGQDAVNLARSFDERIGITGIILTRMESDGRGGAALSMRAVTGKPI 270 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +G GE ++ LE F + I G D Sbjct: 271 KAIGTGEKMDALEEFHPSRIADRILGMGD 299 >gi|27375592|ref|NP_767121.1| signal recognition particle protein [Bradyrhizobium japonicum USDA 110] gi|27348729|dbj|BAC45746.1| signal recognition particle protein [Bradyrhizobium japonicum USDA 110] Length = 630 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 79/283 (27%), Positives = 136/283 (48%), Gaps = 21/283 (7%) Query: 43 DGVREELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVS----VQRVLYDVSELIHK 94 D E+ L+ +D+ + V +++ E+ + K V+ V ++++D ELI+ Sbjct: 143 DAAMREVRRALLEADVALEVVRSFTERVREQAIGATVVKSVTPGQMVVKIVHD--ELINT 200 Query: 95 MLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGL-KVMLAAGDTFRS 152 + ++ D + P V I++VG+ G GKTT KL+++M KV++A+ D +R Sbjct: 201 LG---AEGQTIDINSVPPVPIMMVGLQGSGKTTTTAKLARRMVQRDRRKVLMASLDVYRP 257 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 AA++QL + + G A +A A + + DV+++DTAGR + +M Sbjct: 258 AAMEQLAVLGRDLDIPTLPIVAGQQPAQIAKRALEAGKLGGYDVVLLDTAGRTTLDEDMM 317 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 A + PH VL V D+ TGQ+A+ F G TG+++T++DG RG Sbjct: 318 AEAAAIKAAAN------PHEVLLVADSLTGQDAVNLARAFDERVGLTGIVLTRVDGDGRG 371 Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G + + P+ +G GE + LE F + I G D Sbjct: 372 GAALSMRAVTGKPIKLIGTGEKTDALEDFHPDRIAGRILGMGD 414 >gi|312126840|ref|YP_003991714.1| flagellar biosynthetic protein flhf [Caldicellulosiruptor hydrothermalis 108] gi|311776859|gb|ADQ06345.1| flagellar biosynthetic protein FlhF [Caldicellulosiruptor hydrothermalis 108] Length = 372 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 93/322 (28%), Positives = 151/322 (46%), Gaps = 43/322 (13%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGI----------TDIISSRRLDDGVREELEDLLIRSD 57 S ++ I++L K S LKE I T +S + + +RE L Sbjct: 75 SLQMTQIKELEKKIDSLEKALKEVIKKEQEEGISQTKELSKKNFLNVMRENL-------- 126 Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML---MPLSKPFNWDFSHRPHVI 114 I V +IV+ LL+ A + S+ V+ ++ + I ML PLS FN S P ++ Sbjct: 127 IKNGVENEIVDMLLSNLSA-EASINSVVNNMYKEIKNMLGAAAPLS--FN---SKLPKIV 180 Query: 115 LVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCS 172 VG GVGKTT I K++ K M + G KV DT+R AA++QLK +A+ + V Sbjct: 181 FFVGPTGVGKTTTIAKIAAKLMFEDGKKVGFITADTYRIAAVEQLKTYAEIMNIKTKVWY 240 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 E+ D E F + DV+++DTAGR H N M + + P Sbjct: 241 EV--DEYDRIIENFSDS-----DVVLVDTAGRSHKNQEHMDELKAFVT------KANPDE 287 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 V +L ATT + ++V ++ +I+TK+D + G ++ I + P+ ++ G Sbjct: 288 VFLLLSATTQPSVFKEVVNTYSFLDDYKVIITKVDEVSTYGNILNIRYFTQKPIAYITTG 347 Query: 293 EGI-NDLEPFVAKDFSAVITGC 313 + + +D+E F + F+ +I G Sbjct: 348 QNVPDDIEQFNPEQFAKLIIGS 369 >gi|114328274|ref|YP_745431.1| signal recognition particle, subunit FFH/SRP54 [Granulibacter bethesdensis CGDNIH1] gi|114316448|gb|ABI62508.1| signal recognition particle, subunit FFH/SRP54 [Granulibacter bethesdensis CGDNIH1] Length = 455 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 123/237 (51%), Gaps = 10/237 (4%) Query: 80 SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139 V ++++D LI ++ + P N + + P +L+VG+ G GKTT GKL+ +++ Sbjct: 73 QVMKIVHDA--LIEQLGGAGAVPLNLN-AVAPVPVLMVGLQGSGKTTTSGKLALRLAKKE 129 Query: 140 LK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 + V+LA+ DT R AA QL+ A++ + G +A A + + + D++I Sbjct: 130 RRRVLLASLDTQRPAAQLQLQQLAEQAGVASLPIIQGQTPVEIARRAMETGRREVYDIVI 189 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +DTAGRL + LM + K IR P L V+DA TGQ+A+ F+ G Sbjct: 190 LDTAGRLAIDEELMEEV-KAIRA-----ETNPSETLLVVDAMTGQDAVNTARAFNEAVGV 243 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TG++MT+MDG ARGG + + P+ G GE ++ LE F + + I G D Sbjct: 244 TGIVMTRMDGDARGGAALSMRAVTGAPIKLTGSGEKLDALEDFHPERVAGRILGLGD 300 >gi|319404853|emb|CBI78454.1| signal recognition particle protein [Bartonella rochalimae ATCC BAA-1498] Length = 515 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 127/249 (51%), Gaps = 27/249 (10%) Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM-----LMPLSKPFNWDFSHRPHVILV 116 V +K V + K V ++++D EL+H + L L+ P P VI++ Sbjct: 55 VREKAVGTTIVKSIKPGQMVVKIVHD--ELVHMLGGEGVLSDLNAPA-------PVVIML 105 Query: 117 VGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRT---SADFVCS 172 VG+ G GKTT KL+K++ D KV++A+ DT R AA +QL+ ++ S + Sbjct: 106 VGLQGSGKTTTTAKLAKRLRDKHNKKVLIASLDTRRPAAQEQLRQLGEQVQVPSLPIIPD 165 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 + D +A A +A A+ DV+++D AGR H + LM + K I+ + P+ Sbjct: 166 QSPVDISARAVQA---AKLGGYDVVLLDAAGRNHIDEALMLEL-KEIKAASQ-----PYE 216 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 ++ V D+ TGQ+A+ F G TG+I+T+M+ RGG + + P+ +G G Sbjct: 217 IMLVADSLTGQDAVNLARSFDERIGITGIILTRMESDGRGGAALSMRAVTGKPIKAIGTG 276 Query: 293 EGINDLEPF 301 E ++ LE F Sbjct: 277 EKMDALEEF 285 >gi|54299348|ref|NP_982463.2| AAL079Cp [Ashbya gossypii ATCC 10895] gi|51890935|gb|AAS50287.2| AAL079Cp [Ashbya gossypii ATCC 10895] Length = 586 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 83/314 (26%), Positives = 147/314 (46%), Gaps = 59/314 (18%) Query: 36 ISSRRLDDG----VREELEDLLIRSDIGVAVA----QKIVEELLTKRYAKDVSVQRVLYD 87 + ++ +D+G + E+ + LI ++ A A ++ E+L+ + A SV++ D Sbjct: 267 LGNKTIDEGDLHAILEKFKKHLIGKNVAPAAADYLTSRVSEQLVGLKTASWTSVEQTARD 326 Query: 88 VSE--------------LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 E L+H++ + D P+V +VGVNGVGK+T + KL+ Sbjct: 327 ALEQALISILTPGVSVDLLHEIQKKVGNKV--DAKCDPYVFSIVGVNGVGKSTNLSKLAF 384 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWAD-----------RTSAD------------FV 170 + KV++ A DTFRS A++QL++ + R S + F Sbjct: 385 WLLQNKFKVLIVACDTFRSGAVEQLRVHVENLAQLTDDNHVRGSKNKRGKSGNDAVELFE 444 Query: 171 CSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 GSD +A +A K A+ ++ DV+++DTAGR HN++ LM+ + D Sbjct: 445 AGYGGSDLVTKIAKQAIKYAREQQFDVVLMDTAGRRHNDATLMSPLKSFA------DQAK 498 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTG----LIMTKMDGTARG-GGLIPIVVTHKI 284 P ++ V +A G ++++Q + F+ G I++K D G ++ +V I Sbjct: 499 PDKIIMVGEALVGTDSVQQAKNFNQAFGKDRNLDFFIISKCDTVGEMLGTMVNMVYATGI 558 Query: 285 PVYFLGVGEGINDL 298 P+ F+GVG+ DL Sbjct: 559 PILFIGVGQTYTDL 572 >gi|297180325|gb|ADI16543.1| signal recognition particle GTPase [uncultured bacterium HF4000_009C18] Length = 448 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 142/295 (48%), Gaps = 16/295 (5%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 LT F LK+ + ++ ++++G+R+ + L+ +D+ + VA+++++ + Sbjct: 1 MFENLTSKFEEIFSSLKKAPS--LNEAQVEEGLRK-IRQALLEADVALPVAKELIKNIKP 57 Query: 73 KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 K +++ Q ++ V + I K+L N + + P +++VG+ G GKTT Sbjct: 58 KAIGQEIIRSTTPGQMIVKVVFDEIVKILGDTQSELNLN-AVPPVCLMLVGLQGSGKTTT 116 Query: 128 IGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 KL+K + + K ++ + D +R AA +QL I ++ S + + + A Sbjct: 117 AAKLAKYLEQNNKKKSLMVSLDVYRPAAQEQLNILGEKNSIQTLPTVKDQLPLDIVKRAL 176 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A VDV+I DTAGR + +M I K I+ + P + V D+ TGQ A+ Sbjct: 177 NAASLSGVDVIIFDTAGRTQIDLSMMNEI-KEIKSMAN-----PTETILVADSLTGQVAV 230 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + F T +I+T++DG RGG + + P+ F+G GE I L+ F Sbjct: 231 NVAQEFKKTVDLTSIILTRVDGDGRGGAALSMKFATNTPIKFMGTGEKIEQLDVF 285 >gi|74024974|ref|XP_829053.1| signal recognition particle receptor subunit alpha [Trypanosoma brucei] gi|70834439|gb|EAN79941.1| signal recognition particle receptor alpha subunit, putative [Trypanosoma brucei] Length = 582 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 18/203 (8%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 ++P+ I++ GVNGVGK+T + K++ + G VM+AAGDTFR A++QL++ D Sbjct: 373 NKPYSIVLCGVNGVGKSTTLAKITYWLQQNGHTVMIAAGDTFRHGAVEQLEVHGRCLGVD 432 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 G+D +A+A A +A DV++IDTAGR+ ++ M + K+I + Sbjct: 433 VFQMGYGTDPSAVAAAAISRATRDGCDVVMIDTAGRMQDHESRMRALAKLIH------DN 486 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAV-----------AGTTGLIMTKMDGT-ARGGGLI 276 P VL V +A G + Q+ F+ G G+++TK D + G + Sbjct: 487 QPDLVLFVGEALVGNTGVDQLRRFNQCLVDFVPVGSVPRGIDGIVLTKFDTIDDKVGAAV 546 Query: 277 PIVVTHKIPVYFLGVGEGINDLE 299 +V P+ F+G G+ DL+ Sbjct: 547 SMVYELGQPIVFVGAGQTYQDLK 569 >gi|58264896|ref|XP_569604.1| signal recognition particle binding protein [Cryptococcus neoformans var. neoformans JEC21] gi|134109623|ref|XP_776926.1| hypothetical protein CNBC4160 [Cryptococcus neoformans var. neoformans B-3501A] gi|50259606|gb|EAL22279.1| hypothetical protein CNBC4160 [Cryptococcus neoformans var. neoformans B-3501A] gi|57225836|gb|AAW42297.1| signal recognition particle binding protein, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 674 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 105/217 (48%), Gaps = 35/217 (16%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA--- 167 P+ + VGVNGVGK+T + K+ + GL+V++AA DTFRS A++QL++ A Sbjct: 450 PYTLTFVGVNGVGKSTNLSKVCFWLLQNGLRVLIAACDTFRSGAVEQLRVHVRNLGALGE 509 Query: 168 ----------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 + G DAA +A +A A+ DV++IDTAGR+ +N LM + K Sbjct: 510 EMGQGQGKRIELFERGYGKDAAGIAKDAIAYAKEHAFDVVLIDTAGRMQDNEPLMRALAK 569 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH------------AVA---GTTGLI 262 ++ V + P ++ V +A G A+ Q+ F VA G G+I Sbjct: 570 LVTV------NNPDKIVFVGEALVGNEAVDQLTKFDRALRDFSGAGVGGVARKRGIDGII 623 Query: 263 MTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 +TK D + G + + P+ F+G G+ DL Sbjct: 624 LTKFDTIDDKVGAALSMTYITGQPILFVGCGQTYTDL 660 >gi|261334999|emb|CBH17993.1| signal recognition particle receptor alpha subunit, putative [Trypanosoma brucei gambiense DAL972] Length = 582 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 18/203 (8%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 ++P+ I++ GVNGVGK+T + K++ + G VM+AAGDTFR A++QL++ D Sbjct: 373 NKPYSIVLCGVNGVGKSTTLAKITYWLQQNGHTVMIAAGDTFRHGAVEQLEVHGRCLGVD 432 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 G+D +A+A A +A DV++IDTAGR+ ++ M + K+I + Sbjct: 433 VFQMGYGTDPSAVAAAAISRATRDGCDVVMIDTAGRMQDHESRMRALAKLIH------DN 486 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAV-----------AGTTGLIMTKMDGT-ARGGGLI 276 P VL V +A G + Q+ F+ G G+++TK D + G + Sbjct: 487 QPDLVLFVGEALVGNTGVDQLRRFNQCLVDFVPVGSVPRGIDGIVLTKFDTIDDKVGAAV 546 Query: 277 PIVVTHKIPVYFLGVGEGINDLE 299 +V P+ F+G G+ DL+ Sbjct: 547 SMVYELGQPIVFVGAGQTYQDLK 569 >gi|172707|gb|AAA35093.1| SRP receptor alpha-chain homologue [Saccharomyces cerevisiae] Length = 621 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 109/223 (48%), Gaps = 35/223 (15%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD------- 163 P+V +VGVNGVGK+T + KL+ + KV++ A DTFRS A++QL++ + Sbjct: 397 PYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMD 456 Query: 164 ------------RTSADFV----CSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 +T D+V GSD +A +A K A+ + D++++DTAGR H Sbjct: 457 DSHVRGSKNKRGKTGNDYVELFEAGYGGSDLVTKIAKQAIKYARDQNFDIVLMDTAGRRH 516 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLI 262 N+ LM+ + D P ++ V +A G ++++Q + F+ G I Sbjct: 517 NDPTLMSPLKSFA------DQAKPDKIIMVGEALVGTDSVQQAKNFNDAFGKGRNLDFFI 570 Query: 263 MTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 ++K D G ++ +V IP+ F+GVG+ DL K Sbjct: 571 ISKCDTVGEMLGTMVNMVYATGIPILFVGVGQTYTDLRTLSVK 613 >gi|299753684|ref|XP_002911906.1| signal recognition particle binding protein [Coprinopsis cinerea okayama7#130] gi|298410414|gb|EFI28412.1| signal recognition particle binding protein [Coprinopsis cinerea okayama7#130] Length = 661 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 103/215 (47%), Gaps = 33/215 (15%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA-------- 162 P+ I VGVNGVGK+T + K+ + GL+V++AA DTFRS A++QL++ Sbjct: 438 PYSITFVGVNGVGKSTNLSKVCFWLIQNGLRVLIAACDTFRSGAVEQLRVHVRNLGMLGV 497 Query: 163 -----DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 + + G DAA +A EA A+ DV++IDTAGR+ +N LM + K Sbjct: 498 NGAGDSKGRVELFERGYGKDAAGIAKEAILYAKDNDFDVVLIDTAGRMQDNEPLMRALAK 557 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-------------AGTTGLIMT 264 ++ V + P ++ V +A G A+ Q+ F G G+++T Sbjct: 558 LVAV------NNPDKIIFVGEALVGNEAVDQLTKFDRALRDFSSASGAGKGRGIDGMLVT 611 Query: 265 KMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 K D + G + + P+ F+G G+ DL Sbjct: 612 KWDTVDDKVGAALSMTYVTGQPIIFVGCGQTYTDL 646 >gi|312621589|ref|YP_004023202.1| flagellar biosynthetic protein flhf [Caldicellulosiruptor kronotskyensis 2002] gi|312202056|gb|ADQ45383.1| flagellar biosynthetic protein FlhF [Caldicellulosiruptor kronotskyensis 2002] Length = 372 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 89/317 (28%), Positives = 152/317 (47%), Gaps = 33/317 (10%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGI-----TDIISSRRLDDGVREELEDLLIRSDIGVAV 62 S L+ I++L + S LKE I DI ++ L ++ D++ + I V Sbjct: 75 SLQLTQIKELERKIDSLEKILKEVIKKEQEEDISQTKELS---KKNFIDVMRENLIKNGV 131 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML---MPLSKPFNWDFSHRPHVILVVGV 119 +I++ L + + + S+ V+ ++ + I ML PLS FN S P ++ VG Sbjct: 132 ESEIIDMLFS-NLSGEASINNVVNNIYKEIKNMLGVAAPLS--FN---SKIPKIVFFVGP 185 Query: 120 NGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSD 177 GVGKTT I K++ K M + G KV DT+R AA++QLK +A+ + V E+ D Sbjct: 186 TGVGKTTTIAKIAAKLMFEDGKKVGFITADTYRIAAVEQLKTYAEIMNIKTKVWYEV--D 243 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 E F + DV+++DTAGR H N M + + P V +L Sbjct: 244 EYDRIIENFSDS-----DVVLVDTAGRSHKNQEHMDELKAFVA------KANPDEVFLLL 292 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-N 296 ATT + ++V ++ +I+TK+D + G ++ I + P+ ++ G+ + + Sbjct: 293 SATTQPSVFKEVVNTYSFLNDYKVIITKVDEVSTYGNILNIRYFTQKPIAYITTGQNVPD 352 Query: 297 DLEPFVAKDFSAVITGC 313 D+E F + F+ +I G Sbjct: 353 DIEQFNPEQFAKLIIGS 369 >gi|299541618|ref|ZP_07051967.1| signal recognition particle-docking protein FtsY [Lysinibacillus fusiformis ZC1] gi|298725853|gb|EFI66468.1| signal recognition particle-docking protein FtsY [Lysinibacillus fusiformis ZC1] Length = 124 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/127 (39%), Positives = 80/127 (62%), Gaps = 9/127 (7%) Query: 56 SDIGVAVAQKIVEEL---LTKRYAKDVSV--QRVLYDVSELIHKMLMPLSKPFNWDFSHR 110 +D+GV QK++ +L ++ KD ++ ++ +D++ L+ + PL+ P N Sbjct: 2 ADVGVDTTQKLIRQLEQHADRKALKDSALLFDKLQHDMAALLQDVEQPLT-PVN---PAG 57 Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VIL+VGVNGVGKTT IGK++++ G VMLAAGDTFR+AA++QL++W +R + Sbjct: 58 PFVILMVGVNGVGKTTTIGKMAQQFKQQGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVI 117 Query: 171 CSEIGSD 177 G+D Sbjct: 118 AQHTGAD 124 >gi|254230467|ref|ZP_04923844.1| SRP54-type protein, GTPase domain [Vibrio sp. Ex25] gi|151937016|gb|EDN55897.1| SRP54-type protein, GTPase domain [Vibrio sp. Ex25] Length = 326 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 84/170 (49%), Gaps = 6/170 (3%) Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 + D +R AAI QL+ A DF S +A A A+ K DVLI+DTAGRL Sbjct: 2 SADVYRPAAIKQLETLASDIGVDFFPSSPDQKPIDIANAAIDHAKKKFYDVLIVDTAGRL 61 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 + +M I + + P L V+DA TGQ+A + F TG+++TK Sbjct: 62 AIDEEMMGEIKDLHAAIN------PVETLFVVDAMTGQDAANTAKAFGDALPLTGVVLTK 115 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +DG ARGG + + P+ FLGVGE + LEPF ++ I G D Sbjct: 116 VDGDARGGAALSVRHVTGKPIKFLGVGEKTDALEPFHPDRVASRILGMGD 165 >gi|255718069|ref|XP_002555315.1| KLTH0G06380p [Lachancea thermotolerans] gi|238936699|emb|CAR24878.1| KLTH0G06380p [Lachancea thermotolerans] Length = 586 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 108/217 (49%), Gaps = 35/217 (16%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD------- 163 P++ VVGVNGVGK+T + KL+ + L+V++ A DTFRS A++QL++ + Sbjct: 362 PYIFSVVGVNGVGKSTNLSKLAFWLLQNNLRVLVVACDTFRSGAVEQLRVHVENLAQLTD 421 Query: 164 ----RTSAD------------FVCSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 R S + F GSD +A +A K A + DV+++DTAGR H Sbjct: 422 EAHIRGSKNRRGKSGNDHIELFEAGYGGSDLVTKIAKQAIKYASDQNFDVVLMDTAGRRH 481 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG----LI 262 N+ LM+ + D P ++ V +A G ++++Q + F+A G I Sbjct: 482 NDPTLMSPLKPFA------DQAKPDKIIMVGEALVGTDSVQQAKNFNAAFGKERNLDFFI 535 Query: 263 MTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 ++K D G ++ +V IP+ F+GVG+ DL Sbjct: 536 ISKCDTVGEMLGTMVNMVYATGIPILFVGVGQTYTDL 572 >gi|157877214|ref|XP_001686937.1| signal recognition particle receptor like protein [Leishmania major strain Friedlin] gi|68130012|emb|CAJ09320.1| putative signal recognition particle receptor like protein [Leishmania major strain Friedlin] Length = 605 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 79/281 (28%), Positives = 133/281 (47%), Gaps = 32/281 (11%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-----LIHKMLMP---- 98 +L + LI ++ V VA+ + + + K + LY E + ++L P Sbjct: 324 DLREKLIVKNVAVEVAEHVCKSVEASLAGKRLGTFDSLYKTVEDAMMASLRRILQPKCEV 383 Query: 99 --LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 L + +P+ I++ GVNGVGK+T + K++ + G V+LAAGDTFR A++ Sbjct: 384 NLLRNVAAAKAAGKPYSIVLCGVNGVGKSTSLAKIAYWLQQNGNSVLLAAGDTFRHGAVE 443 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL + G+D + +A A QA + +DV+++DTAGR+ ++ M + Sbjct: 444 QLGVHGRCLGVPIFQLGYGTDPSTVAAAAMAQASKQHIDVVMVDTAGRMQDHESRMRALA 503 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-----------AVAGTTGLIMTK 265 K+I + P VL V +A G N + Q+ F+ + G G+++TK Sbjct: 504 KLIH------DNQPDLVLFVGEALVGNNGIDQLRKFNQCLVDFAPVGSQLRGIDGIVLTK 557 Query: 266 MDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDL---EPFV 302 D + G + +V P+ F+GVG+ DL EP V Sbjct: 558 FDTIDDKVGAALSMVYELGQPIVFVGVGQTYQDLKVIEPEV 598 >gi|312876519|ref|ZP_07736502.1| flagellar biosynthetic protein FlhF [Caldicellulosiruptor lactoaceticus 6A] gi|311796730|gb|EFR13076.1| flagellar biosynthetic protein FlhF [Caldicellulosiruptor lactoaceticus 6A] Length = 372 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 93/322 (28%), Positives = 151/322 (46%), Gaps = 43/322 (13%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGI----------TDIISSRRLDDGVREELEDLLIRSD 57 S ++ I++L K S LKE I T +S + D +RE L Sbjct: 75 SLQMTQIKELEKKIDSLEKALKEVIKKEQEEGINQTKELSKKNFLDVMRENL-------- 126 Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML---MPLSKPFNWDFSHRPHVI 114 I V +IV+ LL+ + + S+ V+ + + I ML PLS FN F P ++ Sbjct: 127 IKNGVENEIVDMLLS-NVSGEASINGVVNFMYKEIKNMLGAAAPLS--FNSKF---PKIV 180 Query: 115 LVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCS 172 VG GVGKTT I K++ K M + G KV DT+R AA++QLK +A+ + V Sbjct: 181 FFVGPTGVGKTTTIAKIAAKLMFEDGKKVGFITADTYRIAAVEQLKTYAEIMNIKTKVWY 240 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 E+ D E+F + DV+++DTAGR H N M + + P Sbjct: 241 EV--DEYDRIIESFADS-----DVVLVDTAGRSHKNQEHMDELKAFVA------KANPDE 287 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 V +L ATT + ++V ++ +I+TK+D + G ++ I + P+ ++ G Sbjct: 288 VFLLLSATTQPSVFKEVVNTYSFLDDYKVIITKVDEVSTYGNILNIRYFTQKPIAYITTG 347 Query: 293 EGI-NDLEPFVAKDFSAVITGC 313 + + +D+E F + F+ +I G Sbjct: 348 QNVPDDIEQFNPEQFAKLIIGS 369 >gi|50305435|ref|XP_452677.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49641810|emb|CAH01528.1| KLLA0C10714p [Kluyveromyces lactis] Length = 600 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 110/218 (50%), Gaps = 37/218 (16%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD------- 163 P+V VVGVNGVGK+T + KL+ + LKV++ A DTFRS A++QL++ + Sbjct: 376 PYVFSVVGVNGVGKSTNLSKLAFWLLKNNLKVLIVACDTFRSGAVEQLRVHVENLAQLTD 435 Query: 164 ------------RTSADFV-CSEIGSDAAAL----AYEAFKQAQAKKVDVLIIDTAGRLH 206 +T ++V E G + L A +A K A+ + DV+++DTAGR H Sbjct: 436 HNHVRGTKNRRGKTGNEYVELFEGGYGGSNLVTKIAKQAIKYAKTEHFDVVLMDTAGRRH 495 Query: 207 NNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTG----L 261 N++ LM+ LK A P ++ V +A G ++++Q F+ G Sbjct: 496 NDATLMSP-------LKSFAEQANPDKIIMVGEALVGTDSVQQAHNFNQAFGKERNLDFF 548 Query: 262 IMTKMDGTAR-GGGLIPIVVTHKIPVYFLGVGEGINDL 298 I++K D G ++ +V IP+ F+GVG+ DL Sbjct: 549 IISKCDTVGELLGTMVNMVYATSIPILFIGVGQTYTDL 586 >gi|151942264|gb|EDN60620.1| Signal recognition particle (SRP) subunit [Saccharomyces cerevisiae YJM789] gi|259145529|emb|CAY78793.1| Srp101p [Saccharomyces cerevisiae EC1118] Length = 621 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 109/223 (48%), Gaps = 35/223 (15%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD------- 163 P+V +VGVNGVGK+T + KL+ + KV++ A DTFRS A++QL++ + Sbjct: 397 PYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMD 456 Query: 164 ------------RTSADFV----CSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 +T D+V GSD +A +A K ++ + D++++DTAGR H Sbjct: 457 DSHVRGSKNKRGKTGNDYVELFEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRH 516 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLI 262 N+ LM+ + D P ++ V +A G ++++Q + F+ G I Sbjct: 517 NDPTLMSPLKSFA------DQAKPDKIIMVGEALVGTDSVQQAKNFNDAFGKGRNLDFFI 570 Query: 263 MTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 ++K D G ++ +V IP+ F+GVG+ DL K Sbjct: 571 ISKCDTVGEMLGTMVNMVYATGIPILFVGVGQTYTDLRTLSVK 613 >gi|256271803|gb|EEU06834.1| Srp101p [Saccharomyces cerevisiae JAY291] Length = 621 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 109/223 (48%), Gaps = 35/223 (15%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD------- 163 P+V +VGVNGVGK+T + KL+ + KV++ A DTFRS A++QL++ + Sbjct: 397 PYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMD 456 Query: 164 ------------RTSADFV----CSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 +T D+V GSD +A +A K ++ + D++++DTAGR H Sbjct: 457 DSHVRGSKNKRGKTGNDYVELFEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRH 516 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLI 262 N+ LM+ + D P ++ V +A G ++++Q + F+ G I Sbjct: 517 NDPTLMSPLKSFA------DQAKPDKIIMVGEALVGTDSVQQAKNFNDAFGKGRNLDFFI 570 Query: 263 MTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 ++K D G ++ +V IP+ F+GVG+ DL K Sbjct: 571 ISKCDTVGEMLGTMVNMVYATGIPILFVGVGQTYTDLRTLSVK 613 >gi|6320498|ref|NP_010578.1| Srp101p [Saccharomyces cerevisiae S288c] gi|2507410|sp|P32916|SRPR_YEAST RecName: Full=Signal recognition particle receptor subunit alpha homolog; Short=SR-alpha; AltName: Full=Docking protein alpha; Short=DP-alpha gi|1230656|gb|AAB64468.1| Srp101p: Signal recognition particle receptor alpha subunit homolog (Swiss Prot. accession number P32916) [Saccharomyces cerevisiae] gi|285811307|tpg|DAA12131.1| TPA: Srp101p [Saccharomyces cerevisiae S288c] Length = 621 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 109/223 (48%), Gaps = 35/223 (15%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD------- 163 P+V +VGVNGVGK+T + KL+ + KV++ A DTFRS A++QL++ + Sbjct: 397 PYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMD 456 Query: 164 ------------RTSADFV----CSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 +T D+V GSD +A +A K ++ + D++++DTAGR H Sbjct: 457 DSHVRGSKNKRGKTGNDYVELFEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRH 516 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLI 262 N+ LM+ + D P ++ V +A G ++++Q + F+ G I Sbjct: 517 NDPTLMSPLKSFA------DQAKPDKIIMVGEALVGTDSVQQAKNFNDAFGKGRNLDFFI 570 Query: 263 MTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 ++K D G ++ +V IP+ F+GVG+ DL K Sbjct: 571 ISKCDTVGEMLGTMVNMVYATGIPILFVGVGQTYTDLRTLSVK 613 >gi|190404765|gb|EDV08032.1| hypothetical protein SCRG_00238 [Saccharomyces cerevisiae RM11-1a] gi|323355613|gb|EGA87433.1| Srp101p [Saccharomyces cerevisiae VL3] Length = 621 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 109/223 (48%), Gaps = 35/223 (15%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD------- 163 P+V +VGVNGVGK+T + KL+ + KV++ A DTFRS A++QL++ + Sbjct: 397 PYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMD 456 Query: 164 ------------RTSADFV----CSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 +T D+V GSD +A +A K ++ + D++++DTAGR H Sbjct: 457 DSHVRGSKNKRGKTGNDYVELFEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRH 516 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLI 262 N+ LM+ + D P ++ V +A G ++++Q + F+ G I Sbjct: 517 NDPTLMSPLKSFA------DQAKPDKIIMVGEALVGTDSVQQAKNFNDAFGKGRNLDFFI 570 Query: 263 MTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 ++K D G ++ +V IP+ F+GVG+ DL K Sbjct: 571 ISKCDTVGEMLGTMVNMVYATGIPILFVGVGQTYTDLRTLSVK 613 >gi|323309627|gb|EGA62835.1| Srp101p [Saccharomyces cerevisiae FostersO] Length = 621 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 109/223 (48%), Gaps = 35/223 (15%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD------- 163 P+V +VGVNGVGK+T + KL+ + KV++ A DTFRS A++QL++ + Sbjct: 397 PYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMD 456 Query: 164 ------------RTSADFV----CSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 +T D+V GSD +A +A K ++ + D++++DTAGR H Sbjct: 457 DSHVRGSKNKRGKTGNDYVELFEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRH 516 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLI 262 N+ LM+ + D P ++ V +A G ++++Q + F+ G I Sbjct: 517 NDPTLMSPLKSFA------DQAKPDKIIMVGEALVGTDSVQQAKNFNDAFGKGRNLDFFI 570 Query: 263 MTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 ++K D G ++ +V IP+ F+GVG+ DL K Sbjct: 571 ISKCDTVGEMLGTMVNMVYATGIPILFVGVGQTYTDLRTLSVK 613 >gi|313608189|gb|EFR84222.1| putative cell division protein [Listeria monocytogenes FSL F2-208] Length = 107 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/90 (51%), Positives = 62/90 (68%) Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 K+ RV+ R P+APH VL VLDATTGQNA Q + F TG+I+TK+DGTA+GG +I Sbjct: 5 KVKRVITREIPNAPHEVLLVLDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVI 64 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 I IPV F+G+GE ++DL+ F A ++ Sbjct: 65 AIRNELDIPVKFVGLGEQMDDLQAFDANEY 94 >gi|225375344|ref|ZP_03752565.1| hypothetical protein ROSEINA2194_00969 [Roseburia inulinivorans DSM 16841] gi|225212833|gb|EEG95187.1| hypothetical protein ROSEINA2194_00969 [Roseburia inulinivorans DSM 16841] Length = 420 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 134/296 (45%), Gaps = 37/296 (12%) Query: 30 EGITDIISSRRLDDGVRE------------ELED-----LLIRSDIGVAVAQKIVEELLT 72 E +++I+ + +DG RE LE+ +L R+ + V +K V ++L Sbjct: 125 ENLSNILEKKLSEDGAREAEMPVTPKASPKNLENFKFMKMLYRTMLNNDVNEKYVNQILD 184 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKL 131 + S V +S + KM++ L +P D S +PHVI VG GVGKTT I K+ Sbjct: 185 EAEKVTNSGSNVDIILSNVYQKMILKLGEPNCIDLSGKKPHVIFFVGPTGVGKTTTIAKI 244 Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD----FVCSEIGSDAAALAYEAF 186 + K + KV + DT+R AA +QLKI+A+ A + E+ LA Sbjct: 245 AAKYKVEHDKKVAMLTADTYRIAAAEQLKIYANILDAPVKIIYSAEELNQSLETLA---- 300 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + D++ +DTAG H N I K++ LD V VL ATT L Sbjct: 301 ------EYDLVFVDTAGFSHKNEEQREDIKKLVN---GLDLKYEKEVYLVLSATTKYKDL 351 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPF 301 ++ + +I TK+D T G ++ I + + ++ G+ + +DLE F Sbjct: 352 MEIVDIYREIAEYKIIFTKLDETTSFGNILNIRLYSGADLSYMTNGQSVPDDLEVF 407 >gi|330907618|ref|XP_003295869.1| hypothetical protein PTT_03573 [Pyrenophora teres f. teres 0-1] gi|311332427|gb|EFQ96034.1| hypothetical protein PTT_03573 [Pyrenophora teres f. teres 0-1] Length = 1411 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 98/189 (51%), Gaps = 21/189 (11%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT---- 165 RP+V+ +VGVNGVGK+T + K++ + +V++AA DTFRS A++QL++ DR Sbjct: 430 RPYVLSIVGVNGVGKSTNLSKIAFFLLQNHHRVLIAAADTFRSGAVEQLRVHVDRLKELS 489 Query: 166 -----SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 + G DAA +A +A A ++++IDTAGR HN+ LM+ + K + Sbjct: 490 QREGGQVELFEKGYGKDAANIAADAVTFATKNNFNIVLIDTAGRRHNDQRLMSSLEKFGK 549 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLI 276 + P +L V +A G +++ Q F+A G G I++K D G L+ Sbjct: 550 LAN------PDKILMVGEALVGTDSVAQARNFNASFGVGRTLDGFIISKCDTV--GDMLL 601 Query: 277 PIVVTHKIP 285 V K P Sbjct: 602 TDVFREKTP 610 >gi|170291202|ref|YP_001738018.1| GTP-binding signal recognition particle [Candidatus Korarchaeum cryptofilum OPF8] gi|170175282|gb|ACB08335.1| GTP-binding signal recognition particle SRP54 G- domain protein [Candidatus Korarchaeum cryptofilum OPF8] Length = 437 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 83/284 (29%), Positives = 139/284 (48%), Gaps = 37/284 (13%) Query: 48 ELEDLLIRSDIGV----AVAQKIVEELLTKRYA-----KDVSVQRVLYDVSELIHKMLMP 98 E++ LI +D+ V ++++I E L + +D++V+ + +++ L+ + P Sbjct: 34 EVQRSLIEADVDVKLVLEISRRIKERALKESPPPGFSRRDLAVKILYEELTNLLGRK--P 91 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA---I 155 P S + +VI++VG+ G GKTT + KL+ +S KV + + D R A+ I Sbjct: 92 AEIPME---SKKTNVIMMVGIEGSGKTTTVAKLAFWLSKRFGKVGIISADVMRPASKLQI 148 Query: 156 DQLKIWADRTSADF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 +QL D V S+ D + E + + ++ + +IIDTAGR + S LM+ Sbjct: 149 EQL------VGPDIPVFSKESKDPVEIMREGIEFFKRERYNFVIIDTAGRHKDESSLMS- 201 Query: 215 IGKMIRVLKRLDPH---APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 LD + P V+ +D T GQ A Q F G+I+TK+DG A+ Sbjct: 202 ---------ELDAYREIGPDLVILTIDGTIGQAAYAQARAFAEKVPVGGVIVTKLDGAAK 252 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 GGG + V P+ F+G GE ++DLE F + F + + G D Sbjct: 253 GGGALSAVAASGAPILFIGTGERVDDLERFDPERFVSRLLGGGD 296 >gi|222530118|ref|YP_002574000.1| GTP-binding signal recognition particle SRP54 G- domain-containing protein [Caldicellulosiruptor bescii DSM 6725] gi|222456965|gb|ACM61227.1| GTP-binding signal recognition particle SRP54 G- domain protein [Caldicellulosiruptor bescii DSM 6725] Length = 372 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 88/315 (27%), Positives = 150/315 (47%), Gaps = 33/315 (10%) Query: 10 SLSWIRKLTKGFASTSLKLKEGI-----TDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 L+ I++L + S LKE I DI ++ L ++ D++ + I V Sbjct: 77 QLTQIKELERKIDSLEKVLKEVIKKEQEEDISQTKELS---KKNFIDVMRENLIKNGVES 133 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKML---MPLSKPFNWDFSHRPHVILVVGVNG 121 +I+ L + + + S+ V+ ++ + I ML PLS FN S P ++ VG G Sbjct: 134 EIINMLFS-NLSGEASINNVVNNIYKGIKNMLGVAAPLS--FN---SKIPKIVFFVGPTG 187 Query: 122 VGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAA 179 VGKTT I K++ K M + G KV DT+R AA++QLK +A+ + V E+ D Sbjct: 188 VGKTTTIAKIAAKLMFEDGKKVGFITADTYRIAAVEQLKTYAEIMNIKTKVWYEV--DEY 245 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 E F + DV+++DTAGR H N M + + P V +L A Sbjct: 246 DRIIENFSDS-----DVVLVDTAGRSHKNQEHMDELKAFVA------KANPDEVFLLLSA 294 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDL 298 TT + ++V ++ +I+TK+D + G ++ I + P+ ++ G+ + +D+ Sbjct: 295 TTQPSVFKEVVNTYSFLNDYKVIVTKVDEVSTYGNILNIRYFTQKPIAYITTGQNVPDDI 354 Query: 299 EPFVAKDFSAVITGC 313 E F + F+ +I G Sbjct: 355 EQFNPEQFAKLIIGS 369 >gi|322490946|emb|CBZ26210.1| putative signal recognition particle receptor like protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 605 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 80/281 (28%), Positives = 133/281 (47%), Gaps = 32/281 (11%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-----LIHKMLMP---- 98 +L + LI ++ V VA+ + + + K + LY E + ++L P Sbjct: 324 DLREKLIAKNVAVEVAEHVCKSVEASLAGKRLGTFDSLYKTVEDAMMASLRRILQPKREV 383 Query: 99 --LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 L + +P+ I++ GVNGVGK+T + K++ + G V+LAAGDTFR A++ Sbjct: 384 NLLRDVAAAKAAGKPYSIVLCGVNGVGKSTSLAKITYWLQQNGNSVLLAAGDTFRHGAVE 443 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL + G+D +A+A A QA + +DV+++DTAGR+ ++ M + Sbjct: 444 QLGVHGRCLGVPVFQLGYGTDPSAVAAAAMAQANKQHIDVVMVDTAGRMQDHESRMRALA 503 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-----------AGTTGLIMTK 265 K+I + P VL V +A G N + Q+ F+ G G+++TK Sbjct: 504 KLIH------DNQPDLVLFVGEALVGNNGIDQLRKFNQCLVDFAPVGSRSRGIDGIVLTK 557 Query: 266 MDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDL---EPFV 302 D + G + +V P+ F+GVG+ DL EP V Sbjct: 558 FDTIDDKVGAALSMVYELGQPIVFVGVGQTYQDLKVIEPEV 598 >gi|225620952|ref|YP_002722210.1| signal recognition particle GTPase [Brachyspira hyodysenteriae WA1] gi|225215772|gb|ACN84506.1| Signal recognition particle GTPase [Brachyspira hyodysenteriae WA1] Length = 451 Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 70/272 (25%), Positives = 128/272 (47%), Gaps = 12/272 (4%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPF 103 +++ L+ +D+ + A K +EE + K+ + + DV + + M+ Sbjct: 34 IKEALLSADVSLEAADKFLEEATNRAIGKEKLEGVEPANQFVADVHDTLVNMIGEGESGL 93 Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 + + + L+ G+ G GKTT KL+K D +VML D R AA++QL + A Sbjct: 94 KLEPVEKTTITLLFGLQGSGKTTTSAKLAKYYKDK-RRVMLVGLDVHRPAAMEQLAVLAR 152 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + A + +A A+ ++ +++++DTAGRL + +M + +++ Sbjct: 153 EVGVPYHIDTKEKKAYKILKKALSIAKKEQYNMILVDTAGRLEIDEEMMLELRRVVN--- 209 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 + +L V+D+T GQ+ + F G G+I+TK D RGG + + Sbjct: 210 --SANVTEKLL-VVDSTAGQSVYDVAKSFQNNIGINGVILTKFDSGVRGGAALSLKYATG 266 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 V F+GVGE ++D++ F AK + I G D Sbjct: 267 SSVKFVGVGEHLDDIDVFDAKRVAGQILGMGD 298 >gi|309800530|ref|ZP_07694681.1| signal recognition particle protein [Streptococcus infantis SK1302] gi|308115841|gb|EFO53366.1| signal recognition particle protein [Streptococcus infantis SK1302] Length = 223 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 6/176 (3%) Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199 L +++ A D +R AAIDQLK + A + + +QA+A D ++I Sbjct: 2 LVLLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQAKANHNDYVLI 61 Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 DTAGRL + +LM +R +K L P+ +L V+DA GQ A F+A T Sbjct: 62 DTAGRLQIDELLM----NELRDVKAL--AQPNEILLVIDAMIGQEAANVAREFNAQLEVT 115 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G+I+TK+DG RGG + + P+ F G GE I D+E F ++ I G D Sbjct: 116 GVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMASRILGMGD 171 >gi|221057428|ref|XP_002261222.1| signal recognition particle receptor alpha subunit [Plasmodium knowlesi strain H] gi|194247227|emb|CAQ40627.1| signal recognition particle receptor alpha subunit, putative [Plasmodium knowlesi strain H] Length = 595 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/203 (34%), Positives = 114/203 (56%), Gaps = 20/203 (9%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 + I+ +GVNGVGK+T + K+ + G LK+M+AA DTFR+ A++QL+ A+ Sbjct: 390 YSIVFLGVNGVGKSTNLAKVCYYLKTKGNLKIMIAACDTFRAGAVEQLRTHANCLDVFLY 449 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 G DAAA+A EA A+ + +V++IDTAGR+ +N LM +GK+I + + P Sbjct: 450 EKGYGKDAAAIAKEAIAYAKKENFNVILIDTAGRMQDNEPLMRSLGKLILI------NNP 503 Query: 231 HSVLQVLDATTGQNALRQVEMFH-AVAGTT---------GLIMTKMDGTAR--GGGLIPI 278 +L V +A G +A+ Q++ F+ A+ T G+++TK D G L + Sbjct: 504 DFILFVGEALVGNDAIDQLKKFNQALTDATCNSNKRTIDGILLTKFDTVDDKVGTALSMV 563 Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301 +T K P+ F+G+G+ L+ F Sbjct: 564 YLTGK-PIVFVGIGQKYTHLKKF 585 >gi|237844315|ref|XP_002371455.1| signal recognition particle protein, putative [Toxoplasma gondii ME49] gi|211969119|gb|EEB04315.1| signal recognition particle protein, putative [Toxoplasma gondii ME49] Length = 564 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 95/320 (29%), Positives = 153/320 (47%), Gaps = 42/320 (13%) Query: 7 ASESLSWIRKLT---KGFASTSLKLKEGITDIISSRRL---DDGVREELEDLLIRSDIGV 60 A+ + W R LT + F L I +++ + R + V EE+ DLL+ S Sbjct: 247 AAAASGWFRSLTSKLQSFTGNKLLTNADIAEVLPAFRAHLAEKNVAEEVIDLLLHS---- 302 Query: 61 AVAQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMP------LSKPFNWDFSHRPHV 113 + L R A SV Q V + + I K+L P L R Sbjct: 303 -----VQSRLKGTRTASFTSVHQTVRMAMRDAIVKILTPKKTVDVLRLALEAKAEGRVFS 357 Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 I+ +GVNGVGK+T + K++ + G L V++AA DTFR+ A++QL+ + Sbjct: 358 IVFLGVNGVGKSTNLAKVAYYLKHKGNLDVLIAACDTFRAGAVEQLRTHSRCLQVPLFER 417 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 G DAAA+A EA A+ + DV++IDTAGR+ +N LM + K++ + ++P Sbjct: 418 GYGKDAAAIAREALATARQEGRDVVLIDTAGRMQDNEPLMRSLAKLVAM------NSPDM 471 Query: 233 VLQVLDATTGQNALRQVEMFH-------AVAG-----TTGLIMTKMDGT-ARGGGLIPIV 279 +L V +A G +A+ Q++ F+ A+ G G+I+TK D + G + +V Sbjct: 472 ILFVGEALVGNDAVDQLKKFNQALVDLTALGGRPPRTVDGIILTKFDTVDDKVGAALSMV 531 Query: 280 VTHKIPVYFLGVGEGINDLE 299 PV F+G G+ +L+ Sbjct: 532 YITGQPVVFVGTGQKYPNLK 551 >gi|167519717|ref|XP_001744198.1| hypothetical protein [Monosiga brevicollis MX1] gi|163777284|gb|EDQ90901.1| predicted protein [Monosiga brevicollis MX1] Length = 317 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 78/281 (27%), Positives = 132/281 (46%), Gaps = 40/281 (14%) Query: 53 LIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYD-VSELIHKMLMP------LSK 101 LI ++ +A+K+ E +L+ + S+ V+ +S+ + ++L P L Sbjct: 30 LIEKNVAQNIAEKLCESVEEQLVGTEKSSFSSIATVVRQAISDALTRILTPKRQVNILRD 89 Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK-- 159 RP+VI GVNGVGK+T + K++ + ++V++AA DTFRS A++QLK Sbjct: 90 VREAQRQQRPYVITFCGVNGVGKSTNLSKIAFWLLSNNMRVLIAACDTFRSGAVEQLKTH 149 Query: 160 -------IWADRTSADFVC---SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 + D A V G D A +A A A+ + DV+++DTAGR+ +N Sbjct: 150 CTKLRNMLQQDDQQAPIVSIFDQGYGKDDAGVAALAISLAKTEGYDVVLVDTAGRMQDNE 209 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV----------AGTT 259 LM + K+I+ + P VL V +A G A+ Q+ F+ Sbjct: 210 PLMRSLTKLIK------HNKPDLVLFVGEALVGNEAVDQLTKFNKALQDFSESSQPRTLD 263 Query: 260 GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 G++++K D + G I + P+ F+G G+ DL+ Sbjct: 264 GIVLSKFDTVDDKVGSAISMTYITGQPIVFVGTGQDYYDLK 304 >gi|148762461|dbj|BAF63932.1| signal recognition particle GTPase [Virgibacillus sp. Sa12-3XX] Length = 260 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 95/168 (56%), Gaps = 13/168 (7%) Query: 111 PHVILVVGVNGVGKTTVIGKLS----KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P V+++VG+ G GKTT GKL+ KK + + L L A D +R AAI QL+ ++ + Sbjct: 96 PTVVMMVGLQGAGKTTTTGKLANLLRKKHNRSPL---LVACDVYRPAAIKQLETLGEQLT 152 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 ++ +A +A ++A+ + D +IIDTAGRLH ++ LM + ++ +K Sbjct: 153 MPVFSMGTEANPVDIATKAIEKAREEHHDYVIIDTAGRLHVDNELMDELQEIKANVK--- 209 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 P + V+D+ TGQ+A+ E F+ +G+++TK+DG RGG Sbjct: 210 ---PDEIFLVVDSMTGQDAVNVAESFNEQLDLSGVVLTKLDGDTRGGA 254 >gi|221481269|gb|EEE19666.1| signal recognition particle protein, putative [Toxoplasma gondii GT1] Length = 588 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 95/320 (29%), Positives = 153/320 (47%), Gaps = 42/320 (13%) Query: 7 ASESLSWIRKLT---KGFASTSLKLKEGITDIISSRRL---DDGVREELEDLLIRSDIGV 60 A+ + W R LT + F L I +++ + R + V EE+ DLL+ S Sbjct: 247 AAAASGWFRSLTSKLQSFTGNKLLTNADIAEVLPAFRAHLAEKNVAEEVIDLLLHS---- 302 Query: 61 AVAQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMP------LSKPFNWDFSHRPHV 113 + L R A SV Q V + + I K+L P L R Sbjct: 303 -----VQSRLKGTRTASFTSVHQTVRMAMRDAIVKILTPKKTVDVLRLALEAKAEGRVFS 357 Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 I+ +GVNGVGK+T + K++ + G L V++AA DTFR+ A++QL+ + Sbjct: 358 IVFLGVNGVGKSTNLAKVAYYLKHKGNLDVLIAACDTFRAGAVEQLRTHSRCLQVPLFER 417 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 G DAAA+A EA A+ + DV++IDTAGR+ +N LM + K++ + ++P Sbjct: 418 GYGKDAAAIAREALATARQEGRDVVLIDTAGRMQDNEPLMRSLAKLVAM------NSPDM 471 Query: 233 VLQVLDATTGQNALRQVEMFH-------AVAG-----TTGLIMTKMDGT-ARGGGLIPIV 279 +L V +A G +A+ Q++ F+ A+ G G+I+TK D + G + +V Sbjct: 472 ILFVGEALVGNDAVDQLKKFNQALVDLTALGGRPPRTVDGIILTKFDTVDDKVGAALSMV 531 Query: 280 VTHKIPVYFLGVGEGINDLE 299 PV F+G G+ +L+ Sbjct: 532 YITGQPVVFVGTGQKYPNLK 551 >gi|299783402|gb|ADJ41400.1| Sec family type I general secretory pathway protein signal recognition particle protein [Lactobacillus fermentum CECT 5716] Length = 268 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 115/219 (52%), Gaps = 20/219 (9%) Query: 45 VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML 96 +RE + ++ L+ +D+ V + V+ + K +V Q+++ V++ + +M+ Sbjct: 28 LRETMREIRLALLEADVNFKVVKDFVKTVREKAAGAEVLKGLNPAQQIVKIVNDELTEMM 87 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAI 155 + P N +H P VI++VG+ G GKTT GKL+K++ + + + A D +R AAI Sbjct: 88 GETATPLN-KSAHIPTVIMMVGLQGAGKTTTAGKLAKRLKKEENARPLFIAADVYRPAAI 146 Query: 156 DQLKIWADRTSADFVCSEIGS--DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 QL+ A S D E+G+ D + + + A+ K D +IIDTAGRL + LM Sbjct: 147 TQLQQVA--ASIDVPVFEMGTDVDPVEIVRQGMEVAKEKHNDYVIIDTAGRLQIDEQLME 204 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 + K+ + K P +L V+DA TGQNA+ + F Sbjct: 205 ELAKIKELAK------PDEILLVVDAMTGQNAVNTAQGF 237 >gi|156101509|ref|XP_001616448.1| signal recognition particle receptor [Plasmodium vivax SaI-1] gi|148805322|gb|EDL46721.1| signal recognition particle receptor, putative [Plasmodium vivax] Length = 602 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 83/284 (29%), Positives = 148/284 (52%), Gaps = 32/284 (11%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELL-----TKRYAKDVSVQRVLYDV-SELIHKML 96 + V + +++ L+ ++ V + ++E++ K+ ++V++ + V SE I +L Sbjct: 316 ESVLQGVKNKLLSKNVAVGICDMLIEKMKGNLIGKKKTLFSMNVKKTVSTVLSETIQSIL 375 Query: 97 MP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDT 149 +P L + + I+ +GVNGVGK+T + K+ + G LK+M+AA DT Sbjct: 376 IPKQSVDVLRAALEAKSIGKLYSIVFLGVNGVGKSTNLAKVCYYLKTKGNLKIMIAACDT 435 Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209 FR+ A++QL+ A+ G DAAA+A EA A+ + V++IDTAGR+ +N Sbjct: 436 FRAGAVEQLRTHANCLDVFLYEKGYGKDAAAIAKEAIAYAKKENFHVILIDTAGRMQDNE 495 Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT--------- 259 LM +GK+I + + P +L V +A G +A+ Q++ F+ A+ T Sbjct: 496 PLMRSLGKLILI------NNPDFILFVGEALVGNDAIDQLKKFNQALTDATCNGNKRTID 549 Query: 260 GLIMTKMDGTAR--GGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 G+++TK D G L + +T K P+ F+G+G+ L+ F Sbjct: 550 GILLTKFDTVDDKVGTALSMVYLTGK-PIVFVGIGQKYTHLKKF 592 >gi|50288847|ref|XP_446853.1| hypothetical protein [Candida glabrata CBS 138] gi|49526162|emb|CAG59786.1| unnamed protein product [Candida glabrata] Length = 605 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 109/223 (48%), Gaps = 37/223 (16%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD-- 163 D P+V VVGVNGVGK+T + KL+ + ++++ A DTFRS A++QL++ + Sbjct: 376 DGKKNPYVFSVVGVNGVGKSTNLSKLAFWLLQNNFRILIVACDTFRSGAVEQLRVHVENL 435 Query: 164 -----------------RTSADFV----CSEIGSD-AAALAYEAFKQAQAKKVDVLIIDT 201 ++ D++ GSD +A +A K A+ + D++++DT Sbjct: 436 AQLMDEKHIRGSKNSRGKSGNDYIELFEAGYGGSDLVTKIAKQAIKYAKEQDFDIVLMDT 495 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 AGR HN+ LM+ LK A P ++ V +A G ++++Q F+ G Sbjct: 496 AGRRHNDPTLMS-------PLKNFAEQANPDKIIMVGEALVGTDSVQQARNFNNAFGKNR 548 Query: 261 ----LIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298 I++K D G ++ +V IP+ F+GVG+ DL Sbjct: 549 NLDFFIISKCDTVGEMLGTMVNMVYATGIPILFVGVGQTYTDL 591 >gi|269120474|ref|YP_003308651.1| signal recognition particle protein [Sebaldella termitidis ATCC 33386] gi|268614352|gb|ACZ08720.1| signal recognition particle protein [Sebaldella termitidis ATCC 33386] Length = 444 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 6/205 (2%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P V+++ G+ G GKTT KL K + G K L D +R AA Q+K+ ++T Sbjct: 100 PTVVMLTGLQGAGKTTFSAKLGKYLKKKGEKPFLIGADVYRPAAKKQIKVLGEQTGISAF 159 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + ++ + ++A+ + +I DTAGRLH + LM + K I+ + P Sbjct: 160 TIDESTNVLEICKAGMEKAKEENATYVIFDTAGRLHIDEQLMNEL-KEIK-----ENFHP 213 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 +L V+D TGQ+A+ + F+ +G+++TK+DG RGG + I P+ F+ Sbjct: 214 DEILLVVDGMTGQDAVNVAKTFNEDLDISGVVLTKLDGDTRGGAALSIKEVSGKPIKFIS 273 Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315 GE ++D+ F ++ I G D Sbjct: 274 DGEKLDDVSAFHPDRLASRILGMGD 298 >gi|322802263|gb|EFZ22659.1| hypothetical protein SINV_03515 [Solenopsis invicta] Length = 275 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 6/165 (3%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 RP+VI+ VG+ G GKTT KL+ K L DTFR+ A DQ+K A + F Sbjct: 100 RPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQIKQNATKARIPF 159 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 S D A+A + + + +++I+DT+GR L +M++V + Sbjct: 160 YGSYTEVDPVAIAQDGVDMFKKEGYEIIIVDTSGRHKQEESLFE---EMLQVANAVQ--- 213 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 P +++ V+DAT GQ Q + F +I+TK+DG A+GGG Sbjct: 214 PDNIIFVMDATIGQACEAQAKAFKERVNVGSIIITKLDGHAKGGG 258 >gi|300870909|ref|YP_003785780.1| signal recognition particle GTPase [Brachyspira pilosicoli 95/1000] gi|300688608|gb|ADK31279.1| signal recognition particle GTPase [Brachyspira pilosicoli 95/1000] Length = 451 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 81/307 (26%), Positives = 141/307 (45%), Gaps = 21/307 (6%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLDD---GVREELEDLLIRSDIGVAVAQKIVEELLTK 73 LTK ++ KL++ ++S + ++D G++E L + +D+ + A K +EE + Sbjct: 5 LTKSISNVFSKLRD--KKVLSEKDIEDTLIGIKEAL----LSADVSLEAADKFLEEAKKR 58 Query: 74 RYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 K+ + + DV + + M+ + + V L+ G+ G GKTT Sbjct: 59 AIGKERLENVDPANQFVADVHDTLVSMIGEGESGLKLEPVEKTTVTLLFGLQGSGKTTTS 118 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+K D +V L D R AA++QL + A + A Sbjct: 119 AKLAKYYKDK-RRVFLVGLDVHRPAAMEQLAVLAKEVGVPCHIDTKEKKPYKILKRAMSI 177 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ ++ +++I+DTAGRL + +M ++ RV+ +D L V+D+T GQ+ Sbjct: 178 AKKEQYNMIIVDTAGRLEIDEEMML---ELRRVVNSVDVTEK---LLVVDSTAGQSVFDV 231 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 + F + G G+I+TK D RGG + + V F+G GE + D++ F AK + Sbjct: 232 AKSFQSNIGINGVILTKFDSGVRGGAALSLRYATGSSVKFIGTGEHLEDIDVFDAKRVAG 291 Query: 309 VITGCLD 315 I G D Sbjct: 292 QILGMGD 298 >gi|320163424|gb|EFW40323.1| GTP-binding protein-PA [Capsaspora owczarzaki ATCC 30864] Length = 631 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/267 (26%), Positives = 128/267 (47%), Gaps = 42/267 (15%) Query: 20 GFASTSLKLKEGIT--DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77 GF S L +G++ ++++ L E+ ++ LI ++ +++K+ + + T K Sbjct: 341 GFGSGLLSFFQGLSGNKVLTAEDLA-ATLEKTKEHLINKNVAADISEKLCDSVRTNLVGK 399 Query: 78 DVS-----VQRVLYDVSELIHKMLMP----------LSKPFNWDFSHRPHVILVVGVNGV 122 + V + E + +L P L+K D S RP I+ GVNGV Sbjct: 400 TMPSFTTITSTVTKSLEEAVTSILSPNRRVDILRDVLAK--RQDPSGRPFTIVFCGVNGV 457 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA----------------DRTS 166 GK+T + K+ + + +++AA DTFR+ A++QL++ D S Sbjct: 458 GKSTNLAKICYWLVQNDISILIAACDTFRAGAVEQLRVHTRCLNDLQRSNGKLGPNDPDS 517 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 G DAAA+A++A + ++ DV+++DTAGR+ +N LM + K+++ Sbjct: 518 VMLYEKGYGKDAAAIAFDAVNYGRDQRRDVVLVDTAGRMQDNEPLMRSLAKLVKT----- 572 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFH 253 + P VL V +A G A+ Q++ F+ Sbjct: 573 -NEPDLVLFVGEALVGNEAVDQLKRFN 598 >gi|282881745|ref|ZP_06290408.1| signal recognition particle protein [Prevotella timonensis CRIS 5C-B1] gi|281304504|gb|EFA96601.1| signal recognition particle protein [Prevotella timonensis CRIS 5C-B1] Length = 444 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 79/265 (29%), Positives = 137/265 (51%), Gaps = 13/265 (4%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99 V E L+D+ L+ +D+ VA+ +++ K +V + + + +++H L L Sbjct: 26 NVAETLKDVRRALLDADVNYKVAKNFTDKVKEKALGMNVLTAVKPGQLMVKIVHDELAEL 85 Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAID 156 + +P +IL+ G+ G GKTT GKL+ + K +L A D +R AAI+ Sbjct: 86 MGGEAVGLQLDSKPAIILMSGLQGSGKTTFTGKLANMLKTKQKKNPLLVACDVYRPAAIE 145 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QLK+ ++ + D A+A +A +QA+AK DV+I+DTAGRL + +M I Sbjct: 146 QLKVVGEQVGVEVYSELDNKDVVAIAQQAIQQAKAKGNDVVIVDTAGRLAVDEEMMNEIS 205 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 ++ + P L V+D+ TGQ+A+ + F+ G+++TK+DG RGG + Sbjct: 206 QLKNAIH------PDETLFVVDSMTGQDAVNTAKEFNDRLDFDGVVLTKLDGDTRGGAAL 259 Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301 I P+ F+G GE ++ ++ F Sbjct: 260 SIRTVVTKPIKFVGTGEKMDAIDVF 284 >gi|326436082|gb|EGD81652.1| hypothetical protein PTSG_02368 [Salpingoeca sp. ATCC 50818] Length = 668 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 108/218 (49%), Gaps = 29/218 (13%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD--RTSA 167 RP ++ GVNGVGK+T + K++ + ++VM+AA DTFRS A++QL+ RT Sbjct: 445 RPFSMVFCGVNGVGKSTNLSKIAFWLLSNNMRVMIAACDTFRSGAVEQLRTHCRKLRTML 504 Query: 168 DFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 D G + A +A +A + A+++K DV++IDTAGR+ +N+ LM + + Sbjct: 505 DDTDDAHPRVVVYDRGYGRNDAEVAADAIRIAKSEKYDVVLIDTAGRMQDNAPLMRSLTQ 564 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----------TGLIMTKMD 267 +IR K P VL V +A G A+ Q+ F+ G+++TK D Sbjct: 565 LIRTNK------PDLVLFVGEALVGNEAVDQLTKFNRALQDYSEERNPRVIDGILLTKFD 618 Query: 268 GT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 + G I + P+ F+G G+ DL K Sbjct: 619 TVDDKVGSSISMTYITGQPIVFVGTGQHYFDLRKLNVK 656 >gi|13123461|gb|AAK12834.1|AF238499_1 chloroplast SRP54 precursor [Chlamydomonas reinhardtii] Length = 549 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 80/277 (28%), Positives = 137/277 (49%), Gaps = 25/277 (9%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV------SVQRVLYDVSELIHKMLMPLS 100 +E+ L+ +D+ + V ++ ++++ + V VQ + +ELI ++ + Sbjct: 97 KEVRRALLEADVSLPVVRRFIKKVEERALGTKVLEGVTPDVQFIKTVSNELID-LMGGGN 155 Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 + W + R +IL+ G+ GVG+ GKL+ + + +L D + AA QL Sbjct: 156 RGKTWSRASR-KIILMAGLQGVGRHCA-GKLALYLR---ARELLLLHDVY--AAHRQLSA 208 Query: 161 WADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 A + D E G+D + +A + ++A+ VD +IIDTAGRL + +MA + + Sbjct: 209 GA---AIDVPVFEDGTDVSPVRIAKKGVEEARRLGVDAVIIDTAGRLQVDEGMMAELRDV 265 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 ++ P L V+DA TGQ A V F+ +G I+TKMDG +RGG + + Sbjct: 266 KSAVR------PSDTLLVVDAMTGQEAANLVRSFNEAVDISGAILTKMDGDSRGGAALSV 319 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F+GVGE + LEPF + ++ I G D Sbjct: 320 REVSGKPIKFVGVGEKMEALEPFYPERMASRILGMGD 356 >gi|270589333|ref|ZP_06221440.1| signal recognition particle protein [Haemophilus influenzae HK1212] gi|270318457|gb|EFA29565.1| signal recognition particle protein [Haemophilus influenzae HK1212] Length = 150 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 52/138 (37%), Positives = 77/138 (55%), Gaps = 6/138 (4%) Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 KV++ + D +R AAI QL+ A DF S++ + +A EA A+ K DVLI+D Sbjct: 11 KVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKEALAGAKLKFYDVLIVD 70 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRLH ++ +M I ++ L P L +DA TGQ+A + F+ TG Sbjct: 71 TAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAKAFNEALPLTG 124 Query: 261 LIMTKMDGTARGGGLIPI 278 +++TK+DG ARGG + I Sbjct: 125 VVLTKVDGDARGGAALSI 142 >gi|85706771|ref|ZP_01037863.1| signal recognition particle protein [Roseovarius sp. 217] gi|85668829|gb|EAQ23698.1| signal recognition particle protein [Roseovarius sp. 217] Length = 367 Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 87/172 (50%), Gaps = 6/172 (3%) Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 +A+ DT R AA++QL I + D + G D +A A QA DV ++DTAG Sbjct: 1 MASLDTNRPAAMEQLAILGKQIGVDTLPIVKGEDPVQIAKRAKTQAALGGYDVYMLDTAG 60 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263 RLH ++ L+A + D P L V+D TGQ+A+ F G TG+++ Sbjct: 61 RLHIDAELIA------QAAAVRDVANPRETLLVVDGLTGQDAVNVATEFDDKIGVTGVVL 114 Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 T+MDG RGG + + P+ F+G+GE ++ LE F + + I G D Sbjct: 115 TRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDALETFEPERIAGRILGMGD 166 >gi|326504320|dbj|BAJ90992.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 632 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 82/278 (29%), Positives = 134/278 (48%), Gaps = 28/278 (10%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFN--- 104 L+D L+ ++ +A+K+ E + K + S R+ V + + L+ + P Sbjct: 353 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSID 412 Query: 105 -------WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 +P+V++ VGVNGVGK+T + K++ + L VM+AA DTFRS A++Q Sbjct: 413 ILRDVQAAKERGKPYVVVFVGVNGVGKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQ 472 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ A R D A +A EA ++A K DV+++DTAGR+ +N LM + K Sbjct: 473 LRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSK 532 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----------TGLIMTKMD 267 +I + K P VL V +A G +A+ Q+ F+ G+++TK D Sbjct: 533 LINLNK------PDLVLFVGEALVGNDAVDQLNKFNQKLADLSTVPTARLIDGILLTKFD 586 Query: 268 G-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 + G + +V PV F+G G+ DL+ K Sbjct: 587 TIDDKVGAALSMVYISGSPVMFVGCGQSYTDLKKLNVK 624 >gi|326523427|dbj|BAJ88754.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 268 Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 110/206 (53%), Gaps = 17/206 (8%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P+V++ VGVNGVGK+T + K++ + L VM+AA DTFRS A++QL+ A R Sbjct: 61 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPI 120 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 D A +A EA ++A K DV+++DTAGR+ +N LM + K+I + K Sbjct: 121 FEKGYEKDPAVVAKEAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSKLINLNK------ 174 Query: 230 PHSVLQVLDATTGQNALRQVEMFH------AVAGTT----GLIMTKMDGT-ARGGGLIPI 278 P VL V +A G +A+ Q+ F+ + T G+++TK D + G + + Sbjct: 175 PDLVLFVGEALVGNDAVDQLNKFNQKLADLSTVPTARLIDGILLTKFDTIDDKVGAALSM 234 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAK 304 V PV F+G G+ DL+ K Sbjct: 235 VYISGSPVMFVGCGQSYTDLKKLNVK 260 >gi|322829127|gb|EFZ32662.1| signal recognition particle receptor like protein, putative [Trypanosoma cruzi] Length = 576 Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 130/274 (47%), Gaps = 29/274 (10%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-----LIHKMLMP----- 98 L + LI ++ V VA+ + + + T + L+ E +H++L P Sbjct: 296 LREKLIAKNVAVEVAEHVCKSVETSLEGMKLGTFDSLHQCIEKAMTSALHRILQPKHEVN 355 Query: 99 -LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 L + +P+ I++ GVNGVGK+T + K++ + +M+AAGDTFR A++Q Sbjct: 356 ILRAVASAQSRKKPYSIVLCGVNGVGKSTTLAKIAYWLQQNDHSIMIAAGDTFRHGAVEQ 415 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L++ G+D +A+A A QA ++ DV++IDTAGR+ ++ M + K Sbjct: 416 LEVHGRCLGVPVFQMGYGTDPSAVAAAAIAQATRQQYDVVMIDTAGRMQDHESRMRALAK 475 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-----------AGTTGLIMTKM 266 +I + P VL V +A G + + Q+ F+ G G+++TK Sbjct: 476 LIH------DNQPDLVLFVGEALVGNSGVDQLRRFNQCLVDFSPVGTVPRGIDGIVLTKF 529 Query: 267 DGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 D + G + +V P+ F+G G+ DL+ Sbjct: 530 DTIDDKVGAALSMVYELGQPIVFVGSGQTYQDLK 563 >gi|71652778|ref|XP_815039.1| signal recognition particle receptor like protein [Trypanosoma cruzi strain CL Brener] gi|70880063|gb|EAN93188.1| signal recognition particle receptor like protein, putative [Trypanosoma cruzi] Length = 574 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 130/274 (47%), Gaps = 29/274 (10%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-----LIHKMLMP----- 98 L + LI ++ V VA+ + + + T + L+ E +H++L P Sbjct: 294 LREKLIAKNVAVEVAEHVCKSVETSLEGMKLGTFDSLHQCIEKAMTSALHRILQPKHEVN 353 Query: 99 -LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 L + +P+ I++ GVNGVGK+T + K++ + +M+AAGDTFR A++Q Sbjct: 354 ILRAVASAQSRKKPYSIVLCGVNGVGKSTTLAKIAYWLQQNDHSIMIAAGDTFRHGAVEQ 413 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L++ G+D +A+A A QA ++ DV++IDTAGR+ ++ M + K Sbjct: 414 LEVHGRCLGVPVFQMGYGTDPSAVAAAAIAQATRQQYDVVMIDTAGRMQDHESRMRALAK 473 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-----------AGTTGLIMTKM 266 +I + P VL V +A G + + Q+ F+ G G+++TK Sbjct: 474 LIH------DNQPDLVLFVGEALVGNSGVDQLRRFNQCLVDFSPVGTVPRGIDGIVLTKF 527 Query: 267 DGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 D + G + +V P+ F+G G+ DL+ Sbjct: 528 DTIDDKVGAALSMVYELGQPIVFVGSGQTYQDLK 561 >gi|189206976|ref|XP_001939822.1| signal recognition particle 54 kDa protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187975915|gb|EDU42541.1| signal recognition particle 54 kDa protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 489 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 82/277 (29%), Positives = 127/277 (45%), Gaps = 40/277 (14%) Query: 47 EELEDLLIRSDIGVAVA----QKIVEELLTKRYAKDVS----VQRVLYDVSELIHKMLMP 98 +E+ + L+ +D+ V + Q I + K A V+ +Q+ ++D EL+ KM+ P Sbjct: 3 KEISNALVEADVNVKLVMNLRQSIKRTVDFKHLAPGVNKKRLIQKAVFD--ELV-KMVDP 59 Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 ++PF + +VI+ VG+ G GKTT KL++ G K L DTFR+ A DQL Sbjct: 60 HAEPFKPR-KGKSNVIMFVGLQGAGKTTTCTKLARWYQARGFKACLVCADTFRAGAFDQL 118 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 K A + + S +D +A E ++ + ++ +++I+DT+GR L Sbjct: 119 KQNATKAKIPYYGSHTQTDPVVVAGEGVEKFKKERFEIIIVDTSGRHRQEKDL------- 171 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 D A S Q F A +I+TK DG A GGG I Sbjct: 172 ------FDEMAAES---------------QARAFKEAADFGAIIITKTDGAAAGGGAISA 210 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 V P+ FLG GE + DLE F + F + + G D Sbjct: 211 VAATHTPIVFLGNGEHMLDLERFAPQAFVSKLLGMGD 247 >gi|145494914|ref|XP_001433451.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124400568|emb|CAK66054.1| unnamed protein product [Paramecium tetraurelia] Length = 436 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/281 (23%), Positives = 134/281 (47%), Gaps = 19/281 (6%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEEL---LTKRYAKDVSVQRVLY-----DVSELIHK 94 D + E+ L ++D+ ++ Q++ E + + +++QR+L ++++L+ Sbjct: 29 DQILNEISIALQKTDVNESLIQELRENIRLEFKLHLLEFINLQRLLQKSIIEELTKLLQN 88 Query: 95 MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 +M +P+V++++G+ G GKT+ K + G KV + + + Sbjct: 89 DIMSFQPK-----KGQPNVMMLIGLKGSGKTSTCFKYAYYFQKRGWKVGIICAGSSQLQE 143 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 ID +K A + F S SD + + + + +D+++IDT G+ + L Sbjct: 144 IDWVKQQAKKIKVLFYGSYFESDPVNATQDGVQIFKKEGIDIILIDTVGKYEKETDLCKE 203 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + +M +++ P +++ V+D++ GQ QV +F + +I+TK+D ++GGG Sbjct: 204 MKQMEYMIQ------PDNIIFVMDSSIGQICQDQVFVFKSAFNQGSIIITKVDRHSKGGG 257 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 I VV P+ F+ GEG DL F + F + + G D Sbjct: 258 AISAVVATNTPIDFICNGEGHEDLLEFQSSQFISKLLGFED 298 >gi|326516596|dbj|BAJ92453.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 218 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 17/206 (8%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P+V++ VGVNGVGK+T + K++ + L VM+AA DTFRS A++QL+ A R Sbjct: 11 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPI 70 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 D A +A EA ++A K DV+++DTAGR+ +N LM + K+I + K Sbjct: 71 FEKGYEKDPAVVAKEAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSKLINLNK------ 124 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDGT-ARGGGLIPI 278 P VL V +A G +A+ Q+ F+ G+++TK D + G + + Sbjct: 125 PDLVLFVGEALVGNDAVDQLNKFNQKLADLSTVPTARLIDGILLTKFDTIDDKVGAALSM 184 Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAK 304 V PV F+G G+ DL+ K Sbjct: 185 VYISGSPVMFVGCGQSYTDLKKLNVK 210 >gi|153810625|ref|ZP_01963293.1| hypothetical protein RUMOBE_01009 [Ruminococcus obeum ATCC 29174] gi|149833021|gb|EDM88103.1| hypothetical protein RUMOBE_01009 [Ruminococcus obeum ATCC 29174] Length = 111 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/110 (43%), Positives = 65/110 (59%), Gaps = 3/110 (2%) Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M + K+ R+L+R P A L VLD TTGQNAL Q + F VA G+I+TK+DGTA+ Sbjct: 1 MEELRKIYRILEREYPEAYLETLVVLDGTTGQNALAQAKQFAEVANVNGIILTKLDGTAK 60 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEKI 321 GG + I IPV ++GVGE I+DL+ F D A + D E+ + Sbjct: 61 GGIAVAIQSELDIPVKYIGVGETIDDLQKF---DADAFVNALFDIDEKDL 107 >gi|167945835|ref|ZP_02532909.1| signal recognition particle-docking protein FtsY [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 227 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 95/153 (62%), Gaps = 2/153 (1%) Query: 16 KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +L + + T L +G+ +++ R+ +DD + EELE LL+ +D+GV +I+++L + Sbjct: 28 RLKERLSRTRSNLSDGLANLLLGRKEIDDELLEELETLLLTADVGVDATSRIIDDLTGRV 87 Query: 75 YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 K++S L + + + +L + P RP V+L+VG+NG GKTT IGKL++ Sbjct: 88 KRKELSDPEALSRILKQQLLAILESCATPPPPPPPGRPLVVLMVGINGAGKTTTIGKLTR 147 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 ++ G +VMLAAGDTFR+AA++QL+ W +R Sbjct: 148 RLKHEGQEVMLAAGDTFRAAAVEQLQSWGERNQ 180 >gi|56807691|ref|ZP_00365570.1| COG0541: Signal recognition particle GTPase [Streptococcus pyogenes M49 591] Length = 386 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 92/174 (52%), Gaps = 10/174 (5%) Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDT 201 + A D +R AAIDQLK + + ++G+D +A + + +QA+ + D ++IDT Sbjct: 1 MIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVRKGLEQARENRNDYVLIDT 58 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AGRL + LM + +R +K L P+ +L V+D+ GQ A F+ TG+ Sbjct: 59 AGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQEAANIAYEFNHQLSITGV 112 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 ++TK+DG RGG + + P+ F G+GE I D+E F S+ I G D Sbjct: 113 VLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRMSSRILGMGD 166 >gi|270489364|ref|ZP_06206438.1| signal peptide binding domain protein [Yersinia pestis KIM D27] gi|270337868|gb|EFA48645.1| signal peptide binding domain protein [Yersinia pestis KIM D27] Length = 282 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 53/131 (40%), Positives = 74/131 (56%), Gaps = 6/131 (4%) Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A +QA+ K DVLI+DTAGRLH + +M I ++ +K P L V+DA TGQ+ Sbjct: 4 ALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMTGQD 57 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A + F+ TG+++TK+DG ARGG + I P+ FLGVGE + LEPF Sbjct: 58 AANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKSDALEPFHPD 117 Query: 305 DFSAVITGCLD 315 ++ I G D Sbjct: 118 RIASRILGMGD 128 >gi|34581773|gb|AAQ76042.1| signal recognition particle receptor protein [Cucumis sativus] Length = 313 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 81/278 (29%), Positives = 137/278 (49%), Gaps = 28/278 (10%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFN--- 104 L+D L+ ++ +A+K+ E + K + S R+ V + + L+ + P Sbjct: 34 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEEALVRILTPRRSID 93 Query: 105 -------WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 +P+V++ VGVNGVGK+T + K++ + + VM+AA DTFRS A++Q Sbjct: 94 ILRDVHAAKEQKKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQ 153 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ A R D A +A EA ++A DV+++DTAGR+ +N LM + K Sbjct: 154 LRTHARRLQIPIFEKGYEKDPAVVAKEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSK 213 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH---AVAGTT-------GLIMTKMD 267 +I + ++P VL V +A G +A+ Q+ F+ A T+ G+++TK D Sbjct: 214 LINL------NSPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPEPRLIDGILLTKFD 267 Query: 268 GT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 + G + +V PV F+G G+ DL+ K Sbjct: 268 TIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVK 305 >gi|4538527|emb|CAB39375.1| signal recognition particle [Corynebacterium glutamicum] Length = 263 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 118/238 (49%), Gaps = 26/238 (10%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKP 102 E+ L+ +D+ + V + + + + +VS Q+V+ V+E + ++L ++ Sbjct: 33 EIRLALLEADVSLTVVRAFINRIKERAVGAEVSQALNPAQQVIKIVNEELVQILGGETRR 92 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 + + P VI++ G+ G GKTT+ GKLSK + G ML A D R A+ QL+I Sbjct: 93 LSL-AKNPPTVIMLAGLQGAGKTTLAGKLSKHLVKQGHTPMLVACDLQRPGAVQQLQIVG 151 Query: 163 DR-----------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 +R TS D + E+G+ D +A ++A+ + D++I+DTAGRL + Sbjct: 152 ERAGVTTFAPDPGTSIDSLEHEMGTSHGDPVEVARAGIEEAKRTQHDIVIVDTAGRLGID 211 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 LM + + P VL V+D+ GQ+A+ E F TG+++TK+ Sbjct: 212 ETLMTQARNIREAIN------PDEVLFVIDSMIGQDAVDTAEAFRDGVDFTGVVLTKL 263 >gi|297798906|ref|XP_002867337.1| signal recognition particle receptor alpha subunit family protein [Arabidopsis lyrata subsp. lyrata] gi|297313173|gb|EFH43596.1| signal recognition particle receptor alpha subunit family protein [Arabidopsis lyrata subsp. lyrata] Length = 633 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 110/207 (53%), Gaps = 17/207 (8%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +P+V++ VGVNGVGK+T + K++ + + VM+AA DTFRS A++QL+ A R Sbjct: 425 RKPYVVVFVGVNGVGKSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIP 484 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 D A +A EA ++A DV+++DTAGR+ +N LM + K+I + + Sbjct: 485 IFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLINL------N 538 Query: 229 APHSVLQVLDATTGQNALRQVEMFH------AVAGTT----GLIMTKMDG-TARGGGLIP 277 P VL V +A G +A+ Q+ F+ + +G G+++TK D + G + Sbjct: 539 QPDLVLFVGEALVGNDAVDQLSKFNQKLSDLSTSGNPRLIDGILLTKFDTIDDKVGAALS 598 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAK 304 +V PV F+G G+ DL+ K Sbjct: 599 MVYISGSPVMFVGCGQSYTDLKKLNVK 625 >gi|15234792|ref|NP_194789.1| signal recognition particle receptor alpha subunit family protein [Arabidopsis thaliana] gi|7269961|emb|CAB79778.1| signal recognition particle receptor-like protein [Arabidopsis thaliana] gi|18086492|gb|AAL57699.1| AT4g30600/F17I23_60 [Arabidopsis thaliana] gi|22137194|gb|AAM91442.1| AT4g30600/F17I23_60 [Arabidopsis thaliana] gi|332660385|gb|AEE85785.1| signal recognition particle receptor subunit alpha [Arabidopsis thaliana] Length = 634 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 110/207 (53%), Gaps = 17/207 (8%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +P+V++ VGVNGVGK+T + K++ + + VM+AA DTFRS A++QL+ A R Sbjct: 426 RKPYVVVFVGVNGVGKSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIP 485 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 D A +A EA ++A DV+++DTAGR+ +N LM + K+I + + Sbjct: 486 IFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLINL------N 539 Query: 229 APHSVLQVLDATTGQNALRQVEMFH------AVAGTT----GLIMTKMDG-TARGGGLIP 277 P VL V +A G +A+ Q+ F+ + +G G+++TK D + G + Sbjct: 540 QPDLVLFVGEALVGNDAVDQLSKFNQKLSDLSTSGNPRLIDGILLTKFDTIDDKVGAALS 599 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAK 304 +V PV F+G G+ DL+ K Sbjct: 600 MVYISGSPVMFVGCGQSYTDLKKLNVK 626 >gi|225445848|ref|XP_002278056.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 616 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 81/278 (29%), Positives = 136/278 (48%), Gaps = 28/278 (10%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFN--- 104 L+D L+ ++ +A+K+ E + K + S RV V + + L+ + P Sbjct: 337 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRVSSTVQAAMEEALVRILTPRRSID 396 Query: 105 -------WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 +P+V++ VGVNGVGK+T + K++ + + VM+AA DTFRS A++Q Sbjct: 397 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHNVSVMMAACDTFRSGAVEQ 456 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ A R D A +A EA ++A DV+++DTAGR+ +N LM + K Sbjct: 457 LRTHARRLQIPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSK 516 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH---AVAGTT-------GLIMTKMD 267 ++ + + P VL V +A G +A+ Q+ F+ A T+ G+++TK D Sbjct: 517 LVNL------NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPKPQLIDGILLTKFD 570 Query: 268 G-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 + G + +V PV F+G G+ DL+ K Sbjct: 571 TIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVK 608 >gi|147768335|emb|CAN66971.1| hypothetical protein VITISV_013670 [Vitis vinifera] gi|297743653|emb|CBI36536.3| unnamed protein product [Vitis vinifera] Length = 313 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 81/278 (29%), Positives = 136/278 (48%), Gaps = 28/278 (10%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFN--- 104 L+D L+ ++ +A+K+ E + K + S RV V + + L+ + P Sbjct: 34 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRVSSTVQAAMEEALVRILTPRRSID 93 Query: 105 -------WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 +P+V++ VGVNGVGK+T + K++ + + VM+AA DTFRS A++Q Sbjct: 94 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHNVSVMMAACDTFRSGAVEQ 153 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ A R D A +A EA ++A DV+++DTAGR+ +N LM + K Sbjct: 154 LRTHARRLQIPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSK 213 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH---AVAGTT-------GLIMTKMD 267 ++ + + P VL V +A G +A+ Q+ F+ A T+ G+++TK D Sbjct: 214 LVNL------NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPKPQLIDGILLTKFD 267 Query: 268 GT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 + G + +V PV F+G G+ DL+ K Sbjct: 268 TIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVK 305 >gi|224142381|ref|XP_002324537.1| predicted protein [Populus trichocarpa] gi|222865971|gb|EEF03102.1| predicted protein [Populus trichocarpa] Length = 312 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 82/278 (29%), Positives = 138/278 (49%), Gaps = 28/278 (10%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPF-NWD 106 L+D L+ ++ +A+K+ E + K + S R+ V + + L+ + P + D Sbjct: 33 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEEALVRILTPRRSID 92 Query: 107 F---------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 +P+V++ VGVNGVGK+T + K++ + + VM+AA DTFRS A++Q Sbjct: 93 ILRDVHAAREQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQ 152 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ A R D A +A EA ++A DV+++DTAGR+ +N LM + K Sbjct: 153 LRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSK 212 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH---AVAGTT-------GLIMTKMD 267 +I + + P VL V +A G +A+ Q+ F+ A T+ G+++TK D Sbjct: 213 LINL------NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPNPRLIDGILLTKFD 266 Query: 268 GT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 + G + +V PV F+G G+ DL+ K Sbjct: 267 TIDDKVGAALSMVYISGSPVMFVGCGQSYTDLKKLNVK 304 >gi|189212014|ref|XP_001942334.1| signal recognition particle receptor subunit alpha [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187979533|gb|EDU46159.1| signal recognition particle receptor subunit alpha [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 1338 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 99/182 (54%), Gaps = 16/182 (8%) Query: 49 LEDLLIRSDIGVAVAQKIVEEL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 +E+ L+R ++ A ++ E + LT + + + ++ ++L S L +L + + Sbjct: 357 MEEHLLRKNVAREAAVRLCESVERDLTLKTSMEKALTKILTPTSSL--DLLREIQHTNS- 413 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + RP+V+ +VGVNGVGK+T + K++ + +V++AA DTFRS A++QL++ DR Sbjct: 414 -TTTRPYVLSIVGVNGVGKSTNLSKIAFFLLQNHHRVLIAAADTFRSGAVEQLRVHVDRL 472 Query: 166 S---------ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 D G DAA +A +A A ++++IDTAGR HN+ LM+ + Sbjct: 473 KELSQREGGHVDLFEKGYGKDAANIAADAVTFAAKNNFNIVLIDTAGRRHNDQRLMSSLE 532 Query: 217 KM 218 K Sbjct: 533 KF 534 >gi|312600981|gb|ADQ90236.1| Cell division protein ftsY [Mycoplasma hyopneumoniae 168] Length = 116 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 40/97 (41%), Positives = 62/97 (63%) Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 + NN LM + K+ +++ + P+APH L V+DATTGQN + Q F + +G+I+T Sbjct: 1 MQNNVNLMQELKKINKIISQKVPNAPHESLLVIDATTGQNGVSQAANFAKITPVSGIILT 60 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 KMDGT++GG + I I V +G+GE ++DL+PF Sbjct: 61 KMDGTSKGGIIFSIKDQLDISVKLVGLGEAMDDLQPF 97 >gi|218513601|ref|ZP_03510441.1| signal recognition particle GTP-binding protein [Rhizobium etli 8C-3] Length = 250 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 83/160 (51%), Gaps = 6/160 (3%) Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 +QL+ + S D + G +A A + A+ DV+I+DTAGR H + LM Sbjct: 1 EQLRQLGAQASIDTLPVISGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMV-- 58 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 +M + KR +PH +L V D+ TGQ+A+ F G TGL++T+MDG RGG Sbjct: 59 -EMADIKKRSNPH---EILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAA 114 Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + + P+ +GVGE +++LE F + + I G D Sbjct: 115 LSMRAVTGKPIKLIGVGEKMSELEEFHPRRIADRILGMGD 154 >gi|224091775|ref|XP_002309350.1| predicted protein [Populus trichocarpa] gi|222855326|gb|EEE92873.1| predicted protein [Populus trichocarpa] Length = 624 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 81/278 (29%), Positives = 136/278 (48%), Gaps = 28/278 (10%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFN--- 104 L+D L+ ++ +A+K+ E + K +S R+ V + + L+ + P Sbjct: 345 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLSSFTRISSTVQAAMEEALVRILTPRRSID 404 Query: 105 -------WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 +P+V++ VGVNGVGK+T + K++ + + VM+AA DTFRS A++Q Sbjct: 405 ILRDVHAATEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQ 464 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ A R D A +A EA ++A DV+++DTAGR+ +N LM + K Sbjct: 465 LRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSK 524 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH---AVAGTT-------GLIMTKMD 267 +I + + P VL V +A G +A+ Q+ F+ A T+ G+++TK D Sbjct: 525 LIYL------NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPNPRLIDGILLTKFD 578 Query: 268 G-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 + G + +V PV F+G G+ DL+ K Sbjct: 579 TIDDKVGAALSMVYISGSPVMFVGCGQSYTDLKKLNVK 616 >gi|240145482|ref|ZP_04744083.1| flagellar biosynthesis protein FlhF [Roseburia intestinalis L1-82] gi|257202456|gb|EEV00741.1| flagellar biosynthesis protein FlhF [Roseburia intestinalis L1-82] Length = 416 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 123/260 (47%), Gaps = 26/260 (10%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWD 106 +L R+ + V +K V ++L + A+ V SV +L S + KM++ L +P Sbjct: 160 MLYRTLLENEVNEKYVNQILDE--AEKVMHSGSSVDAIL---SNVYQKMILKLGQPDTIC 214 Query: 107 FS-HRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADR 164 S +P +I VG GVGKTT I K++ K + G+K+ DT+R AA +QL+++A+ Sbjct: 215 VSGKKPRIIFFVGPTGVGKTTTIAKIASKYKLEMGMKIAFLTADTYRIAATEQLRVYANI 274 Query: 165 TSA--DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 A + S +AA + + D++ +DTAG H N M ++L Sbjct: 275 LDAPMSIIYSAEEMNAAI--------ERVSEYDLIFVDTAGFSHKND---EQCNDMKKML 323 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 LD V V+ ATT L ++ + LI TK+D T G + I + Sbjct: 324 AGLDAAYEREVYLVVSATTKYKDLLEIADRYKEIADYKLIFTKLDETEAYGNIYNIKMYS 383 Query: 283 KIPVYFLGVGEGI-NDLEPF 301 P+ ++ G+ + +D+E F Sbjct: 384 GAPLSYMTNGQNVPDDIEEF 403 >gi|291536023|emb|CBL09135.1| flagellar biosynthetic protein FlhF [Roseburia intestinalis M50/1] Length = 416 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 123/260 (47%), Gaps = 26/260 (10%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWD 106 +L R+ + V +K V ++L + A+ V SV +L S + KM++ L +P Sbjct: 160 MLYRTLLENEVNEKYVNQILDE--AEKVMHSGSSVDAIL---SNVYQKMILKLGQPDTIC 214 Query: 107 FS-HRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADR 164 S +P +I VG GVGKTT I K++ K + G+K+ DT+R AA +QL+++A+ Sbjct: 215 VSGKKPRIIFFVGPTGVGKTTTIAKIASKYKLEMGMKIAFLTADTYRIAATEQLRVYANI 274 Query: 165 TSA--DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 A + S +AA + + D++ +DTAG H N M ++L Sbjct: 275 LDAPMSIIYSAEEMNAAI--------ERVSEYDLIFVDTAGFSHKND---EQCNDMKKML 323 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 LD V V+ ATT L ++ + LI TK+D T G + I + Sbjct: 324 AGLDAAYEREVYLVVSATTKYKDLLEIADRYKEIADYKLIFTKLDETEAYGNIYNIKMYS 383 Query: 283 KIPVYFLGVGEGI-NDLEPF 301 P+ ++ G+ + +D+E F Sbjct: 384 GAPLSYMTNGQNVPDDIEEF 403 >gi|317129188|ref|YP_004095470.1| flagellar biosynthetic protein FlhF [Bacillus cellulosilyticus DSM 2522] gi|315474136|gb|ADU30739.1| flagellar biosynthetic protein FlhF [Bacillus cellulosilyticus DSM 2522] Length = 371 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 70/262 (26%), Positives = 136/262 (51%), Gaps = 27/262 (10%) Query: 44 GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK--DVSVQRVLYD-VSELIHKMLMPLS 100 G +E+ +LL D+ +++++LL + Y++ D + +++ E+I+ +L + Sbjct: 112 GHLKEINELLNSIDVEDVSRLQVMKQLLKRWYSENGDEKSKETIHEWTKEIINDLLSHID 171 Query: 101 -KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQL 158 PFN+ + + VVG GVGKTT + K++ K++ G KV DT+R AAI+QL Sbjct: 172 YSPFNY----KKRFLNVVGPTGVGKTTTLAKIAAKIAISDGRKVAFITTDTYRIAAIEQL 227 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK--KVDVLIIDTAGRLHNNSILMAGIG 216 K +A + V E+ + E FK A+ + + DV+++D+AGR N + + +G Sbjct: 228 KTYAKILN---VPVEV-----VYSIEDFKNAKDRLSEYDVILVDSAGRNFLNDLYVKQLG 279 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 ++I + ++ H VL T+ N +++ ++ F A+ +I TK D T G + Sbjct: 280 EVIDFNEEMETHL------VLSLTSKYNDMKKIIDQFQAI-NINKVIFTKADETQSHGAM 332 Query: 276 IPIVVTHKIPVYFLGVGEGIND 297 + + + + I ++ G+ + D Sbjct: 333 LNVALNYGIGSSYITFGQNVPD 354 >gi|255577019|ref|XP_002529394.1| signal recognition particle receptor alpha subunit, putative [Ricinus communis] gi|223531142|gb|EEF32990.1| signal recognition particle receptor alpha subunit, putative [Ricinus communis] Length = 618 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 81/278 (29%), Positives = 136/278 (48%), Gaps = 28/278 (10%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP----- 102 L+D L+ ++ +A+K+ E + K + S R+ V + + L+ + P Sbjct: 339 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEEALVRILTPKRSID 398 Query: 103 -----FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 +P+V++ VGVNGVGK+T + K++ + + VM+AA DTFRS A++Q Sbjct: 399 ILRDVHAAKEQKKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQ 458 Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 L+ A R D A +A EA ++A DV+++DTAGR+ +N LM + K Sbjct: 459 LRTHARRLQIPIFEKGYEKDPAIVAKEAIQEAARYGSDVVLVDTAGRMQDNEPLMRALSK 518 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH---AVAGTT-------GLIMTKMD 267 +I + + P VL V +A G +A+ Q+ F+ A T+ G+++TK D Sbjct: 519 LIYL------NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPNPRLIDGILLTKFD 572 Query: 268 G-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 + G + +V PV F+G G+ DL+ K Sbjct: 573 TIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVK 610 >gi|325116612|emb|CBZ52165.1| putative signal recognition particle protein [Neospora caninum Liverpool] Length = 520 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 85/276 (30%), Positives = 134/276 (48%), Gaps = 36/276 (13%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMP----- 98 V EE+ DLL+ S + L R A +V Q V + I K+L P Sbjct: 247 VAEEVIDLLLHS---------VQSRLKGTRTASFTTVHQTVRMATRDAIVKILTPKKTVD 297 Query: 99 -LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAID 156 L R I+ +GVNGVGK+T + K++ + G L V++AA DTFR+ A++ Sbjct: 298 VLRLALEAKAEGRVFSIVFLGVNGVGKSTNLAKVAYYLKHKGNLDVLIAACDTFRAGAVE 357 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 QL+ + G DAAA+A EA A+ + DV++IDTAGR+ +N LM + Sbjct: 358 QLRTHSRCLQVPLFERGYGKDAAAIAREALATARQEGRDVVLIDTAGRMQDNEPLMRSLA 417 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-------AVAG-----TTGLIMT 264 K++ + + P +L V +A G +A+ Q++ F+ A+ G G+I+T Sbjct: 418 KLVAI------NNPDMILFVGEALVGNDAVDQLKKFNQALVDLTALGGRPPRTVDGIILT 471 Query: 265 KMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 K D + G + +V PV F+G G+ +L+ Sbjct: 472 KFDTVDDKVGAALSMVYITGQPVVFVGTGQKYPNLK 507 >gi|283781324|ref|YP_003372079.1| GTP-binding signal recognition particle SRP54 G-domain-containing protein [Pirellula staleyi DSM 6068] gi|283439777|gb|ADB18219.1| GTP-binding signal recognition particle SRP54 G-domain protein [Pirellula staleyi DSM 6068] Length = 417 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 98/207 (47%), Gaps = 17/207 (8%) Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAI 155 +P+ P +S V+ +VG GVGKTT I KL+ K + G +V L DT+R AA+ Sbjct: 207 IPIGGPIRL-YSRERRVVALVGPTGVGKTTTIAKLAAKFRLEQGARVGLITVDTYRIAAV 265 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 DQL+ +A D A A E F D+++IDTAGR + + + Sbjct: 266 DQLQTYATIMQLPLEVVNQPRDMTA-ALERFA-----DFDLVLIDTAGRSPRDGARLQEL 319 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV-EMFHAVAGTTGLIMTKMDGTARGGG 274 M LD P V VL + + AL+ E F V G T L++TK+D A Sbjct: 320 RSM------LDIAQPDEVHLVLASVASREALQSAREAFERV-GATSLVITKLDEAASPAS 372 Query: 275 LIPIVVTHKIPVYFLGVGEGI-NDLEP 300 L+P++ IP+ + G+ + D+ P Sbjct: 373 LLPVLRDFAIPLSYTTSGQNVPEDIRP 399 >gi|308798719|ref|XP_003074139.1| SRP54_SYNY3 Signal recognition particle protein (ISS) [Ostreococcus tauri] gi|116000311|emb|CAL49991.1| SRP54_SYNY3 Signal recognition particle protein (ISS) [Ostreococcus tauri] Length = 426 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 57/145 (39%), Positives = 80/145 (55%), Gaps = 10/145 (6%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P VIL+ G+ GVGKTT GKLS M G V+L A D +R AAIDQLK T Sbjct: 41 PTVILMAGLQGVGKTTACGKLSLAMRKQGKTVLLVATDVYRPAAIDQLKTLG--TQIGVP 98 Query: 171 CSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 ++G DA+ +A ++A+ + +DV+I+DTAGRL+ + LM+ + +L Sbjct: 99 VFDMGVDASPPEVAARGVRKAKEEDIDVVIVDTAGRLNIDEKLMSELKDT-----KLATK 153 Query: 229 APHSVLQVLDATTGQNALRQVEMFH 253 A ++L V+DA TGQ A F Sbjct: 154 ADETLL-VVDAMTGQEAANLTASFQ 177 >gi|323490159|ref|ZP_08095379.1| GTP-binding signal recognition particle SRP54 G- domain protein [Planococcus donghaensis MPA1U2] gi|323396207|gb|EGA89033.1| GTP-binding signal recognition particle SRP54 G- domain protein [Planococcus donghaensis MPA1U2] Length = 369 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/261 (24%), Positives = 127/261 (48%), Gaps = 23/261 (8%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112 L + ++ V +K++E+L+T+ ++ + V+ K++ + + + P Sbjct: 117 LTQQEVSADVQEKLIEKLMTRDESETAPATENTWQVAR--EKLISMIVENQTHSTAENPR 174 Query: 113 VILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 + +G GVGKTT I K++ + ++ KV L DT+R AA++QLK + + Sbjct: 175 ITCFIGPTGVGKTTTIAKIAASHTLNSDKKVGLITADTYRIAAVEQLKTYGGILNIPVQV 234 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 E +D A E F+ D+++IDTAGR + + + + LK L P + Sbjct: 235 IESSADLTK-AIEDFEDC-----DIILIDTAGRNYQQT-------EYVEELKNLLPADSN 281 Query: 232 SVLQVLDATTG--QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 + ++ + T ++ R ++ F +++ T L++TK D T G ++ ++ + IP+ ++ Sbjct: 282 VQVHLVLSLTAKYEDMKRIIDNFQSIS-TNELLLTKKDETGSSGAILNLICHYDIPIRYI 340 Query: 290 GVGEGIND----LEPFVAKDF 306 G+ + D L P + DF Sbjct: 341 ANGQNVPDDLLALTPELVADF 361 >gi|55420633|gb|AAV52172.1| signal recognition particle receptor alpha subunit [Caenorhabditis remanei] Length = 183 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/175 (37%), Positives = 98/175 (56%), Gaps = 23/175 (13%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 RP+VI+ GVNGVGK+T + K++ +++ +V++AAGDTFR+ A++QL+ +A Sbjct: 8 RPYVIVFCGVNGVGKSTNLAKITFWLTENKHRVLIAAGDTFRAGAVEQLRTHTRHLNALH 67 Query: 170 VCS----EIG--SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 S E G DAA LA A K A + DV+++DTAGR+ +N LM + K+IRV Sbjct: 68 PQSVHLYEQGYGKDAAGLAAAAIKIAAERDFDVVLVDTAGRMQDNEPLMRELAKLIRV-- 125 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMF------HAVAGTT-----GLIMTKMD 267 + P VL V +A G A+ Q+ F HA G G+++TK D Sbjct: 126 ----NEPDLVLFVGEALVGNEAVDQLVKFNEALANHAAPGAKPRLIDGIVLTKFD 176 >gi|51894122|ref|YP_076813.1| flagellar GTP-binding protein [Symbiobacterium thermophilum IAM 14863] gi|51857811|dbj|BAD41969.1| flagellar GTP-binding protein [Symbiobacterium thermophilum IAM 14863] Length = 478 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 17/221 (7%) Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAA 154 LM P + R V+ ++G GVGKTT + KL+ + + GLKV L DTFR AA Sbjct: 272 LMGPGAPIQAEAGRR-RVVALIGPTGVGKTTTLAKLAAHFALERGLKVGLITADTFRIAA 330 Query: 155 IDQLKIWADRTSADFVCSEIGSDA-AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 +DQL+ +AD + E +D ALA+ A D++++DT GR H + MA Sbjct: 331 VDQLRTYADILAIPLYTVERPTDVHQALAHNA-------DADLVLMDTGGRSHKDEERMA 383 Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 ++ +L P H V+ + T ++ R +E + + G I TK D T+ G Sbjct: 384 ---ELQELLAEAQPDEVHLVVSL--NTNPRDVRRMLERYLPL-GVNRFIFTKADETSAPG 437 Query: 274 GLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITGC 313 ++ I +P+ ++ G+ + +DL P + D+S + G Sbjct: 438 LMLNIRAQWDLPISYVTDGQSVPDDLRPADSVDYSKLFMGA 478 >gi|326204604|ref|ZP_08194460.1| GTP-binding signal recognition particle SRP54 G- domain [Clostridium papyrosolvens DSM 2782] gi|325985171|gb|EGD46011.1| GTP-binding signal recognition particle SRP54 G- domain [Clostridium papyrosolvens DSM 2782] Length = 343 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 115/252 (45%), Gaps = 28/252 (11%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV--LYDVSELIHKMLMPLSKPFNWDFSHR 110 L+++++ +AQKI+E++ K A++++ V L +S ++ K ++P N+ + Sbjct: 94 LLKNEVDQDIAQKIIEKVAEKSDARNINDASVAMLSVISSILGK-----AEPINFRQDGK 148 Query: 111 PHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWAD----RT 165 P VIL VG GVGKTT + KL+ M V DT+R AA+DQLK +A+ Sbjct: 149 PTVILFVGPTGVGKTTTLAKLAASFMLTNNKNVGFITADTYRIAAVDQLKTYAEILGIPI 208 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 S + EI S + + DV++IDTAG + + + K+I V Sbjct: 209 SIAYSVEEISSQIENYSDK----------DVILIDTAGCSYRDKQKFEELQKIIEVCN-- 256 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 V VL AT R + + LI TK+D T G ++ P Sbjct: 257 ----ADEVFLVLSATVSSKNCRDIIKNYGFIPNYRLIFTKLDETPVYGSILNTKCYSDKP 312 Query: 286 VYFLGVGEGIND 297 + ++ G+ + D Sbjct: 313 LAYITNGQNVPD 324 >gi|68171945|ref|ZP_00545258.1| GTP-binding signal recognition particle SRP54, G-domain:Signal peptide binding (SRP54) M-domain [Ehrlichia chaffeensis str. Sapulpa] gi|67998635|gb|EAM85375.1| GTP-binding signal recognition particle SRP54, G-domain:Signal peptide binding (SRP54) M-domain [Ehrlichia chaffeensis str. Sapulpa] Length = 290 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 72/117 (61%), Gaps = 6/117 (5%) Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A AQ DVLI+DTAGRLH + ++M + +R +K D +P V+ V+D+ GQ+ Sbjct: 15 AMDNAQQANCDVLILDTAGRLHVDQVMM----EELRAIK--DLTSPSEVILVVDSMIGQD 68 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 A+ + F+ G TG+I+T++DG +RGG + + ++ P+ F+ GE ++DL+ F Sbjct: 69 AINVAKSFNDNIGITGIILTRIDGDSRGGAALSMKMSVGSPIKFIANGEKLSDLDDF 125 >gi|158320534|ref|YP_001513041.1| GTP-binding signal recognition particle [Alkaliphilus oremlandii OhILAs] gi|158140733|gb|ABW19045.1| GTP-binding signal recognition particle SRP54 G- domain [Alkaliphilus oremlandii OhILAs] Length = 409 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 106/203 (52%), Gaps = 15/203 (7%) Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAA 154 L+P S DF + V+ VG GVGKTT I K++ S + GLKV L + DT+R AA Sbjct: 203 LVPESINNKADF--KSKVVFFVGSTGVGKTTTIAKIAANYSLEKGLKVGLISADTYRIAA 260 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 + QLKI++D + + E+ + + A K+ + + DV++IDTAGR H N+ + Sbjct: 261 VAQLKIYSDILN---IPLEVIYSPEEI-HGAIKRLENR--DVILIDTAGRSHKNNEHVEE 314 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + K+++ + + V V+ ATT + LR + + +I TK+D + G Sbjct: 315 LSKLLKEIHEKE------VCLVVSATTKNSDLRDILHTYNFIDDYKIIFTKLDEVSTYGS 368 Query: 275 LIPIVVTHKIPVYFLGVGEGIND 297 ++ I + + + ++ G+ + D Sbjct: 369 ILNIAMKNPQSISYVTTGQSVPD 391 >gi|325972883|ref|YP_004249947.1| signal recognition particle protein [Mycoplasma suis str. Illinois] gi|323651485|gb|ADX97567.1| signal recognition particle protein [Mycoplasma suis str. Illinois] Length = 457 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 86/300 (28%), Positives = 139/300 (46%), Gaps = 28/300 (9%) Query: 32 ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT------KRYAKDVSVQRVL 85 + +IS + LD + E+L++ ++SD+ + VA + EL K + VQ+ L Sbjct: 20 LAKMISEKDLD-LIFEDLKEEFVKSDVNLDVATQFFNELKVVIKEEKKIFLGKEEVQKEL 78 Query: 86 YD-VSELIHKMLMPLSKPFNWDFSHRPHV--ILVVGVNGVGKTTVIGKLS---KKMSDAG 139 Y + E + + L S+P R V L+VGVNGVGKTT KLS +K D Sbjct: 79 YQRIKEKLIESLGQKSQPLKL---RRKGVNKYLLVGVNGVGKTTTAAKLSYYLQKKEDIK 135 Query: 140 LKVMLAAGDTFRSAAIDQLK--IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197 + + D R+AA QL + ++ FV E+ ++ + F K +V+ Sbjct: 136 T-IETVSLDYNRAAAFTQLHQLVTPLGINSSFV-DELTNEEQTNKFREF--LSGLKSEVV 191 Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257 I D+ G L N+ + + K+ ++ P + V+DA +GQ +L V+ F+ Sbjct: 192 IFDSGGILPNSPDSLVYLKKLAELIN------PTETIIVVDALSGQESLEIVKTFYNNIH 245 Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317 +I+TK D + G + K+P+ FLG GE I DL PF + I G D+ Sbjct: 246 IDSIIVTKSDSLSPLGAALSSHYFLKLPIKFLGEGEHIQDLIPFYPDRIVSRIIGEGDFA 305 >gi|15643669|ref|NP_228715.1| flagellar biosynthesis regulator FlhF [Thermotoga maritima MSB8] gi|4981443|gb|AAD35988.1|AE001755_11 flagellar biosynthesis protein FlhF [Thermotoga maritima MSB8] Length = 378 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 95/187 (50%), Gaps = 17/187 (9%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +L VG GVGKTT + KL+ + D +V + DT+R AA +QLKI+AD Sbjct: 175 VLFVGTTGVGKTTSLAKLAARFKIDEKKRVAILTLDTYRIAAAEQLKIYAD-------IM 227 Query: 173 EIGSDAAALAYEA-FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 +I A EA ++ K D++++DTAGR H N + M+ + + +K P+ Sbjct: 228 DIPMKIAYTPKEAEYEMMALKDYDIVLVDTAGRSHQNDLQMSELRALSEAVK------PN 281 Query: 232 SVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 VL + +++ VE F AV T +I+TKMD T+ G + I +P+ F+ Sbjct: 282 ITFLVLSMNYKLDDMKRIVERFSAVK-PTHIILTKMDETSVYGTFVNISEITGLPIAFVT 340 Query: 291 VGEGIND 297 G+ + D Sbjct: 341 NGQRVPD 347 >gi|207346488|gb|EDZ72970.1| YDR292Cp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 595 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 35/205 (17%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD------- 163 P+V +VGVNGVGK+T + KL+ + KV++ A DTFRS A++QL++ + Sbjct: 397 PYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMD 456 Query: 164 ------------RTSADFV----CSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 +T D+V GSD +A +A K ++ + D++++DTAGR H Sbjct: 457 DSHVRGSKNKRGKTGNDYVELFEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRH 516 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLI 262 N+ LM+ + D P ++ V +A G ++++Q + F+ G I Sbjct: 517 NDPTLMSPLKSFA------DQAKPDKIIMVGEALVGTDSVQQAKNFNDAFGKGRNLDFFI 570 Query: 263 MTKMDGTARG-GGLIPIVVTHKIPV 286 ++K D G ++ +V IP+ Sbjct: 571 ISKCDTVGEMLGTMVNMVYATGIPI 595 >gi|325067025|ref|ZP_08125698.1| signal recognition particle protein [Actinomyces oris K20] Length = 391 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 9/139 (6%) Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+A + A+ DV+++DTAGRL ++ +M + IR+ D +PH +L VLDA Sbjct: 2 AVARSGVEHARTNGYDVVVVDTAGRLGVDAEMMD---QAIRIR---DAVSPHEILFVLDA 55 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 GQ+A+ F G TG++++K+DG ARGG + + PV F GEG+ D E Sbjct: 56 MVGQDAVNTSVAFRDGVGFTGVVLSKLDGDARGGAALSVRGVTGAPVLFSSTGEGLTDFE 115 Query: 300 PFVAKDFSAVITGCLDYGE 318 F A ++ I LD G+ Sbjct: 116 RFHADRMASRI---LDMGD 131 >gi|124365569|gb|ABN09803.1| GTP-binding signal recognition particle SRP54, G-domain [Medicago truncatula] Length = 314 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 92/204 (45%), Gaps = 17/204 (8%) Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK-IWADRTSADFVCSEIGSDAAA 180 GKTT + + GLK L DT R+ A DQLK I+A+ + +G Sbjct: 83 CGKTTTCAQFANHYQKKGLKTGLVCTDTLRNGAFDQLKQIYAETNIPCY--GRVGY--CQ 138 Query: 181 LAYEAFKQAQAKKVDVLIID-TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 E Q Q D++I+D + G L+ I ++ + K P V+ V+D Sbjct: 139 NCRERCGQMQGGNCDLIIVDVSGGHKQEEDALIEEIHQVSKATK------PDLVILVIDG 192 Query: 240 TTGQNA-----LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 GQ+A L+Q F +I++KMDG A GGG + V K V F+G GE Sbjct: 193 NIGQHAFDHRSLKQATAFTQSVDIGAVIVSKMDGYAMGGGSLSAVAATKSSVIFIGTGEH 252 Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318 +++ E F K F + + G D+ E Sbjct: 253 MDEFEVFEVKPFVSSLLGMDDWYE 276 >gi|326519590|dbj|BAK00168.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 341 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 11/133 (8%) Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D +A E ++ + +K D++IIDT+GR + L + ++ K P V+ V Sbjct: 14 DPVKIAVEGLEKFRQEKSDLIIIDTSGRHMQEAALFEEMRQVAEATK------PDLVIFV 67 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 +D + GQ A Q + F A +I+TK+DG A+GGG + V K PV F+G GE I+ Sbjct: 68 MDGSIGQAAFDQAQAFKQSASVGAVIVTKLDGHAKGGGALSAVAATKSPVIFIGTGEHID 127 Query: 297 DL-----EPFVAK 304 D EPFVA+ Sbjct: 128 DFDVFNVEPFVAR 140 >gi|220929447|ref|YP_002506356.1| GTP-binding signal recognition particle SRP54 G- domain protein [Clostridium cellulolyticum H10] gi|219999775|gb|ACL76376.1| GTP-binding signal recognition particle SRP54 G- domain protein [Clostridium cellulolyticum H10] Length = 389 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 115/252 (45%), Gaps = 28/252 (11%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV--LYDVSELIHKMLMPLSKPFNWDFSHR 110 L+++++ +A KI+E++ K A++++ V L +S L+ K ++P N+ + Sbjct: 140 LLKNEVDQDIAHKIIEKVAEKSDARNINDASVVMLSVISSLLGK-----AEPINFRQDGK 194 Query: 111 PHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWAD----RT 165 P VIL VG GVGKTT + KL+ M V DT+R AA+DQLK +A+ Sbjct: 195 PTVILFVGPTGVGKTTTLAKLAASFMLTNNKNVGFITADTYRIAAVDQLKTYAEILGIPI 254 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 S + EI S + + DV++IDTAG + + + K+I V + Sbjct: 255 SIAYSVEEISSQIEDYSDK----------DVVLIDTAGCSYRDKQKFEELQKIIEVCQ-- 302 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 V VL AT R + + LI TK+D T G ++ P Sbjct: 303 ----ADEVFLVLSATVSSKNCRDIIKNYGFIQDYRLIFTKLDETPVYGSILNTKCYSNKP 358 Query: 286 VYFLGVGEGIND 297 + ++ G+ + D Sbjct: 359 LAYITNGQNVPD 370 >gi|160880826|ref|YP_001559794.1| GTP-binding signal recognition particle [Clostridium phytofermentans ISDg] gi|160429492|gb|ABX43055.1| GTP-binding signal recognition particle SRP54 G- domain [Clostridium phytofermentans ISDg] Length = 404 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 72/265 (27%), Positives = 123/265 (46%), Gaps = 21/265 (7%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RP 111 LI D+ A +++ E+ KD ++ +L K+++ L +P ++S + Sbjct: 153 LISHDVDEKYANQVIAEI-DPMLKKDTTIDYIL---GNFYQKIILKLGQPKTIEYSGGKT 208 Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 I +G GVGKTT I K++ + K+ L DT+R AA++QLK +AD D Sbjct: 209 KFIYFIGPTGVGKTTTIAKIASSYKVEKQAKIALMTSDTYRIAAVEQLKTYAD--ILDVP 266 Query: 171 CSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 I S+ K+A + K D+++IDTAGR H + I K++ ++ P Sbjct: 267 LRVIYSET------EMKEAMDEFKDYDLVLIDTAGRSHKSKEQRDDIDKLVHIV----PE 316 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 V VL ATT L ++ ++ LI TK+D T G + I + P+ + Sbjct: 317 EDREVYLVLSATTKYKDLIRIADTYSDIVNYRLIFTKLDETIGIGNIFNIRMYTNAPLSY 376 Query: 289 LGVGEGI-NDLEPFVAKDFSAVITG 312 G+ + +D+E A+ + + G Sbjct: 377 ATFGQNVPDDIEKLDAQSIARQLLG 401 >gi|168334566|ref|ZP_02692722.1| GTP-binding signal recognition particle SRP54, G- domain [Epulopiscium sp. 'N.t. morphotype B'] Length = 374 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 132/287 (45%), Gaps = 30/287 (10%) Query: 38 SRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELI 92 ++ ++D + E E +L +S + + + I++++L + V + R LY+ Sbjct: 109 TKNIEDTIISEEKIPFEKILKQSMLEEGIEESIIDDILDQVSENTVDGISRALYNT---- 164 Query: 93 HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFR 151 L + FN++ P V VG GVGKTT I KL+ K+ + KV+L DT+R Sbjct: 165 ---LTSVMPKFNYNI---PRVTFFVGSTGVGKTTTIAKLTAIKVLEENKKVVLLTADTYR 218 Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211 AA+ QLK +A+ + + SD + K D + IDTAGR H + Sbjct: 219 IAAVAQLKTYAEILNVEIETIFEPSDIPKYL------QKWKDADYIFIDTAGRSHKD--- 269 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTA 270 +G++ +L ++ V VL+ T ++ V ++ + LI+TK+D T Sbjct: 270 FNQLGELKELLATVE---EKQVFLVLNMNTQYKDIQSIVPIYKNLVDRFALIITKLDETD 326 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITGCLDY 316 G L+ I K + ++ G+ + D+E F + ++ G + Y Sbjct: 327 GIGNLLNIASCTKTEIAYITTGQNVPEDIEKFETLKYVRLLLGRIKY 373 >gi|164657404|ref|XP_001729828.1| hypothetical protein MGL_2814 [Malassezia globosa CBS 7966] gi|159103722|gb|EDP42614.1| hypothetical protein MGL_2814 [Malassezia globosa CBS 7966] Length = 540 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 85/170 (50%), Gaps = 26/170 (15%) Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW-- 161 N S P+ I VGVNGVGK+T + K+ + +V++AA DTFRS A++QL+ Sbjct: 362 NVSPSLNPYSIGFVGVNGVGKSTNLAKVCFWLLQNRYRVLIAACDTFRSGAVEQLRTHVR 421 Query: 162 ---------------ADRTSA---DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 A T A + G DAA +A +A A+ + DV++IDTAG Sbjct: 422 NLGELEVDGHRVADGAPGTGAAMLELYERGYGKDAAGIAKDALAYARNEGFDVVLIDTAG 481 Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 R+ +N LM + K+I V + P VL V +A G A+ Q+ F+ Sbjct: 482 RMQDNEPLMRALAKLIAV------NQPDKVLFVGEALVGNEAVDQLTKFN 525 >gi|239826633|ref|YP_002949257.1| flagellar biosynthesis regulator FlhF [Geobacillus sp. WCH70] gi|239806926|gb|ACS23991.1| GTP-binding signal recognition particle SRP54 G- domain protein [Geobacillus sp. WCH70] Length = 372 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 70/256 (27%), Positives = 119/256 (46%), Gaps = 24/256 (9%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAK--DVSVQRVLYDVSELIHKMLMPLSKPFNW 105 E+ L+R +I +AQ+I+ +LL K Y + ++V E++ + L PL PF Sbjct: 115 EVHYRLVRQEISAPLAQEIMADLLEKWYKSGGKAAEKQVFAWAKEIVKEKLSPL--PFG- 171 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 S + I VVG GVGKTT + K++ + + + G + DT+R AAIDQLK +A+ Sbjct: 172 GISFQKKYINVVGPTGVGKTTTLAKIAARCVLEHGKNIAFITTDTYRIAAIDQLKTYANI 231 Query: 165 TSADF-VCSEIGSDAAALAYEAFKQAQAK--KVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 + VC + + F +A+ K DV+ IDTAGR + + + MI Sbjct: 232 LNVPLEVCYNL---------QDFHEAKKKLSDRDVVFIDTAGRNFRHLQYVKDLRNMI-- 280 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 D + V T ++ + ++ I TK+D T G + +++ Sbjct: 281 ----DFNEEMETFLVFALTAKYEDMKTIYEQFSLIPIDRFIFTKLDETTHYGAMFNLMME 336 Query: 282 HKIPVYFLGVGEGIND 297 +K+ +L G+ + D Sbjct: 337 YKVGAAYLTNGQNVPD 352 >gi|225181590|ref|ZP_03735031.1| GTP-binding signal recognition particle SRP54 G- domain protein [Dethiobacter alkaliphilus AHT 1] gi|225167698|gb|EEG76508.1| GTP-binding signal recognition particle SRP54 G- domain protein [Dethiobacter alkaliphilus AHT 1] Length = 361 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 77/268 (28%), Positives = 126/268 (47%), Gaps = 29/268 (10%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELI--HKMLMPLSKPFNWDFSH 109 LI +D+ A+AQ+I+ E+ +D + + L D V ELI K+ L D Sbjct: 112 LIDNDVDPALAQQILTEI-----HEDFAAENALSDEVVELILQKKVREHLR---TADVPD 163 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 V+ VG GVGKTT + KL+ + + +V + D++R A++QL+ +AD T Sbjct: 164 TSRVLTFVGPTGVGKTTTLAKLAARFALYHNKQVGMITIDSYRIGAVEQLRTYADITGMP 223 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVD--VLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D QA + D ++++DTAGR NS+ ++ + + L Sbjct: 224 IEVVMTPKD--------MTQALERLADREIILVDTAGRNAKNSMQVSELAVFMEALP--- 272 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 AP + L VL ATT L+Q+ + LI TK+D T G L+ + T +P+ Sbjct: 273 --APETFL-VLSATTKTRDLQQIIAKFSKVNFNRLIFTKLDETETFGALLNVANTSNLPI 329 Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVITGC 313 +L G+ + +D+E A + +I G Sbjct: 330 TYLTTGQNVPDDIENATADKLAKLILGV 357 >gi|23099031|ref|NP_692497.1| flagellar biosynthesis regulator FlhF [Oceanobacillus iheyensis HTE831] gi|22777259|dbj|BAC13532.1| flagella-associated protein [Oceanobacillus iheyensis HTE831] Length = 372 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 124/250 (49%), Gaps = 28/250 (11%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDV--SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110 LI +I +A+++++E+ +D +++ +L +V +LI L + F +D HR Sbjct: 121 LIAQEISPTIAEQLIKEVRDDETNQDEYHNLESILINVKQLIVNRLEQVDIGFTYD--HR 178 Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +I VG GVGKTT I K++ K+ + KV DT+R AA+DQLK +A Sbjct: 179 --IIQFVGPTGVGKTTTIAKIAAKLYLEEKKKVAFITLDTYRIAAVDQLKTYA------- 229 Query: 170 VCSEIGSDAAALAY--EAFKQAQAK--KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 +I +AY E +++A K DV+++DTAGR + ++ + I + LK Sbjct: 230 ---KILHIPVEVAYSKEDYRKAVEKFSSFDVILVDTAGRNYRDNQYLNEIQEWPSSLKVT 286 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 + VL T+ + + + G G++ TK+D T + G L+ I +KI Sbjct: 287 N-------YLVLSMTSKPKDMLDIFQRFQLLGIHGVVFTKLDETEQYGNLLNISWNNKIR 339 Query: 286 VYFLGVGEGI 295 + ++ G+ + Sbjct: 340 IGYMTNGQDV 349 >gi|254478874|ref|ZP_05092238.1| SRP54-type protein, GTPase domain [Carboxydibrachium pacificum DSM 12653] gi|214035187|gb|EEB75897.1| SRP54-type protein, GTPase domain [Carboxydibrachium pacificum DSM 12653] Length = 341 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 128/296 (43%), Gaps = 42/296 (14%) Query: 6 VASESLSWIRKLTKGFAST-SLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 + ++ ++ L K A+ S ++ E I+ + ++ G+ +EL LL G+ Sbjct: 66 ITKSDINELKNLIKTIATNKSSEISENGVKSITLKLVEYGIEKELSQLLGE---GIDKLD 122 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 + +E+L KR K + +P + S R +L +G GVGK Sbjct: 123 DVGKEVLKKRI------------------KAFLGAPQPLD---SERSKKVLFIGPTGVGK 161 Query: 125 TTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 TT + K++ + + G KVML D FR AA+DQLK + D + + Sbjct: 162 TTTVAKIASHLILNEGKKVMLVTADVFRIAAVDQLKSYGDILG-------VPVKVVGNIF 214 Query: 184 EAFK-QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATT 241 E K Q + + DV++IDTAGR H + K I LK +A + L ATT Sbjct: 215 EFHKLQPEFEDYDVVLIDTAGRSHKDE-------KRINELKTFIKYAECDEIFLCLSATT 267 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 L++V + AG LI TK+D T ++ V P+ + G+ + D Sbjct: 268 RSQDLKEVINRYDFAGNYKLIFTKLDETDNYSSILNAVYYSGRPISYFTNGQIVPD 323 >gi|20807868|ref|NP_623039.1| flagellar GTP-binding protein [Thermoanaerobacter tengcongensis MB4] gi|20516432|gb|AAM24643.1| Flagellar GTP-binding protein [Thermoanaerobacter tengcongensis MB4] Length = 341 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 128/296 (43%), Gaps = 42/296 (14%) Query: 6 VASESLSWIRKLTKGFAST-SLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 + ++ ++ L K A+ S ++ E I+ + ++ G+ +EL LL G+ Sbjct: 66 ITKSDINELKNLIKTIATNKSSEISENGVKSITLKLVEYGIEKELSQLLGE---GIDKLD 122 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 + +E+L KR K + +P + S R +L +G GVGK Sbjct: 123 DVGKEVLKKRI------------------KAFLGAPQPLD---SERSKKVLFIGPTGVGK 161 Query: 125 TTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 TT + K++ + + G KVML D FR AA+DQLK + D + + Sbjct: 162 TTTVAKIASHLILNEGKKVMLVTADVFRIAAVDQLKSYGDILG-------VPVKVVGNIF 214 Query: 184 EAFK-QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATT 241 E K Q + + DV++IDTAGR H + K I LK +A + L ATT Sbjct: 215 EFHKLQPEFEDYDVVLIDTAGRSHKDE-------KRINELKTFVKYAECDEIFLCLSATT 267 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 L++V + AG LI TK+D T ++ V P+ + G+ + D Sbjct: 268 RSQDLKEVINRYDFAGNYKLIFTKLDETDNYSSILNAVYYSGRPISYFTNGQIVPD 323 >gi|325989376|ref|YP_004249075.1| Signal recognition particle protein [Mycoplasma suis KI3806] gi|323574461|emb|CBZ40111.1| Signal recognition particle protein [Mycoplasma suis] Length = 457 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 86/300 (28%), Positives = 142/300 (47%), Gaps = 28/300 (9%) Query: 32 ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT------KRYAKDVSVQRVL 85 + +IS + LD + E+L++ ++SD+ + VA + EL K + VQ+ L Sbjct: 20 LAKMISEKDLD-LIFEDLKEEFVKSDVNLDVATQFFNELKVVIKEEKKIFLGKEEVQKEL 78 Query: 86 YD-VSELIHKMLMPLSKPFNWDFSHRPHV--ILVVGVNGVGKTTVIGKLS---KKMSDAG 139 Y + E + + L S+P R V L+VGVNGVGKTT KLS +K D Sbjct: 79 YQRIKEKLIESLGQKSQPLKL---RRKGVNKYLLVGVNGVGKTTTAAKLSYYLQKKEDIK 135 Query: 140 LKVMLAAGDTFRSAAIDQLK--IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197 + + D R+AA QL + ++ FV E+ ++ + F K +V+ Sbjct: 136 T-IETVSLDYNRAAAFTQLHQLVTPLGINSSFV-DELTNEEQTNKFREF--LSGLKSEVV 191 Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257 I D+ G L N+ + + K+ ++ +A +++ V+DA +GQ +L V+ F+ Sbjct: 192 IFDSGGILPNSPDSLVYLKKLAELI-----NATETII-VVDALSGQESLEIVKTFYNNIH 245 Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317 +I+TK D + G + K+P+ FLG GE I DL PF + I G D+ Sbjct: 246 IDSIIVTKSDSLSPLGAALSSHYFLKLPIKFLGEGEHIQDLIPFYPDRIVSRIIGEGDFA 305 >gi|306820136|ref|ZP_07453784.1| flagellar biosynthesis protein FlhF [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551914|gb|EFM39857.1| flagellar biosynthesis protein FlhF [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 433 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 24/222 (10%) Query: 86 YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL-SKKMSDAGLKVML 144 YD +L +++L + DFS R + +G GVGKTT + K+ SK+ + K+ Sbjct: 217 YD--DLKNEVLDMFADYIKVDFSKRHKYYVFIGSTGVGKTTTLAKIASKETIENKKKIGF 274 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE----AFKQAQAKKVDVLIID 200 DT+R +A++QLK +A EI S +AYE +F + D++ ID Sbjct: 275 LTLDTYRISAVEQLKTYA----------EILSSPIEVAYEIQDLSFAIDRLSNRDMVFID 324 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGR HNN + I + +VL ++ V VL A T + + + ++ Sbjct: 325 TAGRSHNNK---SQIDDLKKVLTDIE---DKKVFLVLSANTSIDDIYDIIDTYSFVDEYE 378 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPF 301 +I+TK D T R G ++ I+ + ++ G+ + +D+E F Sbjct: 379 IIVTKTDETGRMGNILDIIKKTGKNISYITFGQNVPDDIEKF 420 >gi|323338216|gb|EGA79449.1| Srp101p [Saccharomyces cerevisiae Vin13] Length = 359 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 30/171 (17%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD------- 163 P+V +VGVNGVGK+T + KL+ + KV++ A DTFRS A++QL++ + Sbjct: 182 PYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMD 241 Query: 164 ------------RTSADFV----CSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 +T D+V GSD +A +A K ++ + D++++DTAGR H Sbjct: 242 DSHVRGSKNKRGKTGNDYVELFEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRH 301 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257 N+ LM+ + D P ++ V +A G ++++Q + F+ G Sbjct: 302 NDPTLMSPLKSFA------DQAKPDKIIMVGEALVGTDSVQQAKNFNDAFG 346 >gi|326791521|ref|YP_004309342.1| GTP-binding signal recognition particle SRP54 G- domain [Clostridium lentocellum DSM 5427] gi|326542285|gb|ADZ84144.1| GTP-binding signal recognition particle SRP54 G- domain [Clostridium lentocellum DSM 5427] Length = 381 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 103/211 (48%), Gaps = 17/211 (8%) Query: 89 SELIHKMLMPLSKPF-NWDFSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAA 146 E+I K+ L K + +I +G GVGKTT + KL+ K + + KV+L Sbjct: 161 EEMIRKIYSELEKSLREKEEKDLAQIIFFIGSTGVGKTTTLAKLTAKYVLEEHKKVVLFT 220 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY-EAFKQAQAKKVDVLIIDTAGRL 205 DT+R AA++QLK +AD + I ++A Y E +K +D ++IDTAGR Sbjct: 221 ADTYRIAAVEQLKTYADILGVEIEV--IYNEAELPQYIEKWKH-----MDYILIDTAGRS 273 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT-GQNALRQVEMFHAVAGTTGLIMT 264 H N + ++ ++K +D V VL+A+T ++ + V + LI+T Sbjct: 274 HKNE---EQVKELKALMKNVD---KKQVFLVLNASTAAKDVVTIVNTYEKAESEFDLIIT 327 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 K+D T G ++ I P+ +L G+ + Sbjct: 328 KLDETDEIGNVVNIGYYANKPIMYLTNGQNV 358 >gi|160902845|ref|YP_001568426.1| GTP-binding signal recognition particle [Petrotoga mobilis SJ95] gi|160360489|gb|ABX32103.1| GTP-binding signal recognition particle SRP54 G- domain [Petrotoga mobilis SJ95] Length = 438 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 86/181 (47%), Gaps = 14/181 (7%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 ++ +G GVGKTT + K++ + K+ L DT+R AA DQLK +AD Sbjct: 247 VMFIGPTGVGKTTTLAKIAANLKKLNKKIALITIDTYRIAATDQLKTYADILGVSLHICY 306 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 SD +A E+ DV++IDTAGR H N++ M ++V K D P Sbjct: 307 TPSD-LKIALESLLN-----FDVILIDTAGRSHKNNLQMGE----LKVFK--DVVEPDYN 354 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 + ++ + T + + + LI TKMD T+ G L + K+P+ LG+ + Sbjct: 355 IMLVSSNTNCEDMMHIYDNFSYLKPNALIFTKMDETSSYGQLFSFLEYSKLPL--LGITD 412 Query: 294 G 294 G Sbjct: 413 G 413 >gi|291524882|emb|CBK90469.1| flagellar biosynthetic protein FlhF [Eubacterium rectale DSM 17629] Length = 414 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 20/221 (9%) Query: 88 VSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLA 145 +S + K+++ +P + +P V+ VG GVGKTT I K++ K + + Sbjct: 193 LSNVYQKLILRFGQPETIKVNGKKPRVVFFVGPTGVGKTTTIAKIASKFKVNYNKNIAFI 252 Query: 146 AGDTFRSAAIDQLKIWAD----RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 DT+R AA DQL+ +A+ S + +E+ S A YE + DV+ +DT Sbjct: 253 TADTYRIAATDQLRTFANILDTPLSVIYTATELNS--AVAEYE--------QADVIFVDT 302 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AG H N M +L L P SV VL ATT L + + L Sbjct: 303 AGFSHKNETQR---NDMRALLAGLSPEYEKSVYLVLSATTKYRDLISIIDSYKDIDDYKL 359 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPF 301 I TK+D T+ G L+ I + + ++ G+ + +D+E F Sbjct: 360 IFTKLDETSSYGNLLNIKLYSDAGISYVTNGQNVPDDIEVF 400 >gi|238924149|ref|YP_002937665.1| GTP-binding signal recognition particle SRP54, G-domain protein [Eubacterium rectale ATCC 33656] gi|238875824|gb|ACR75531.1| GTP-binding signal recognition particle SRP54, G-domain protein [Eubacterium rectale ATCC 33656] gi|291529023|emb|CBK94609.1| flagellar biosynthetic protein FlhF [Eubacterium rectale M104/1] Length = 414 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 20/221 (9%) Query: 88 VSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLA 145 +S + K+++ +P + +P V+ VG GVGKTT I K++ K + + Sbjct: 193 LSNVYQKLILRFGQPETIKVNGKKPRVVFFVGPTGVGKTTTIAKIASKFKVNYNKNIAFI 252 Query: 146 AGDTFRSAAIDQLKIWAD----RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 DT+R AA DQL+ +A+ S + +E+ S A YE + DV+ +DT Sbjct: 253 TADTYRIAATDQLRTFANILDTPLSVIYTATELNS--AVAEYE--------QADVIFVDT 302 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AG H N M +L L P SV VL ATT L + + L Sbjct: 303 AGFSHKNETQR---NDMRALLAGLSPEYEKSVYLVLSATTKYRDLISIIDSYKDIDDYKL 359 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPF 301 I TK+D T+ G L+ I + + ++ G+ + +D+E F Sbjct: 360 IFTKLDETSSYGNLLNIKLYSDAGISYVTNGQNVPDDIEVF 400 >gi|119570967|gb|EAW50582.1| hCG2039249 [Homo sapiens] Length = 168 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 6/139 (4%) Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D +A E ++ + + +++I+DT+GR L +M++V + P +++ V Sbjct: 10 DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAI---QPDNIVYV 63 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 +DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+G GE I+ Sbjct: 64 MDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHID 123 Query: 297 DLEPFVAKDFSAVITGCLD 315 D EPF + F + + G D Sbjct: 124 DFEPFKTQPFISKLLGMGD 142 >gi|309804264|ref|ZP_07698341.1| SRP54-type protein, helical bundle domain protein [Lactobacillus iners LactinV 11V1-d] gi|308163667|gb|EFO65937.1| SRP54-type protein, helical bundle domain protein [Lactobacillus iners LactinV 11V1-d] Length = 209 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 105/209 (50%), Gaps = 14/209 (6%) Query: 20 GFASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 F + S KL++ + + IS ++ RE + L+ +D+ V +K ++ + + Sbjct: 2 AFENLSEKLQKALRKLTGKGKISENDINQASRE-IRLALLEADVNFKVVKKFIKTIKAEA 60 Query: 75 YAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 K+V Q+++ V++ + KM+ + + H P +I++VG+ G GKTT +G Sbjct: 61 LGKEVQESLNPGQQIIKIVNDELTKMMGSDTASI-IEAKHIPTIIMMVGLQGTGKTTTVG 119 Query: 130 KLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KL+ + + + +L AGD +R AAIDQLK + V SE +D A+ Q Sbjct: 120 KLANYLIKNKKARPLLIAGDIYRPAAIDQLKTIGASLNVP-VYSENNTDVVAIVENGLMQ 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 A D +IIDTAGRL + LM + K Sbjct: 179 ADRNHNDYVIIDTAGRLEIDDQLMDEVKK 207 >gi|89061728|ref|XP_944820.1| PREDICTED: signal recognition particle 54 kDa protein-like [Homo sapiens] Length = 168 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 6/139 (4%) Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D +A E ++ + + +++I+DT+GR L +M++V + P +++ V Sbjct: 9 DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAI---QPDNIVYV 62 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 +DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+G GE I+ Sbjct: 63 MDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHID 122 Query: 297 DLEPFVAKDFSAVITGCLD 315 D EPF + F + + G D Sbjct: 123 DFEPFKTQPFISKLLGMGD 141 >gi|255030848|ref|ZP_05302799.1| hypothetical protein LmonL_20161 [Listeria monocytogenes LO28] Length = 259 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 10/165 (6%) Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 AAI QL+ + D +G + +A +A +A+ + +D +IIDTAGRLH + Sbjct: 2 AAIKQLETLGKQL--DMPVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDET 59 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 LM + ++ + P +L V+D+ TGQ+A+ + F+ TG+++TK+DG Sbjct: 60 LMDELKQVKEI------ATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDT 113 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 RGG + I P+ F+ GE + LE F ++ I G D Sbjct: 114 RGGAALSIRSVTGKPIKFIATGEKMEALETFHPDRMASRILGMGD 158 >gi|148269165|ref|YP_001243625.1| flagellar biosynthesis regulator FlhF [Thermotoga petrophila RKU-1] gi|170287827|ref|YP_001738065.1| GTP-binding signal recognition particle [Thermotoga sp. RQ2] gi|281411463|ref|YP_003345542.1| flagellar biosynthetic protein FlhF [Thermotoga naphthophila RKU-10] gi|147734709|gb|ABQ46049.1| GTP-binding signal recognition particle SRP54, G- domain [Thermotoga petrophila RKU-1] gi|170175330|gb|ACB08382.1| GTP-binding signal recognition particle SRP54 G- domain [Thermotoga sp. RQ2] gi|281372566|gb|ADA66128.1| flagellar biosynthetic protein FlhF [Thermotoga naphthophila RKU-10] Length = 378 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 94/187 (50%), Gaps = 17/187 (9%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +L VG GVGKTT + KL+ + D +V + DT+R AA +QLKI+AD Sbjct: 175 VLFVGTTGVGKTTSLAKLAARFKIDEKKRVAILTLDTYRIAAAEQLKIYAD-------IM 227 Query: 173 EIGSDAAALAYEA-FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 +I A EA ++ K D++++DTAGR H N + M+ + + +K P+ Sbjct: 228 DIPMKIAYTPKEAEYEMMALKDYDIVLVDTAGRSHQNDLQMSELRALSEAVK------PN 281 Query: 232 SVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 V+ + +++ VE F V T +I+TKMD T+ G + I +P+ F+ Sbjct: 282 ITFLVISMNYKLDDVKRIVERFSTVKP-THIILTKMDETSVYGTFVNISEITGLPIAFVT 340 Query: 291 VGEGIND 297 G+ + D Sbjct: 341 NGQRVPD 347 >gi|317051540|ref|YP_004112656.1| flagellar biosynthetic protein FlhF [Desulfurispirillum indicum S5] gi|316946624|gb|ADU66100.1| flagellar biosynthetic protein FlhF [Desulfurispirillum indicum S5] Length = 464 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 76/278 (27%), Positives = 139/278 (50%), Gaps = 23/278 (8%) Query: 49 LEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 L DL L+R+ + + K+V+ L K + D + V+ + +L+ + ++P+ Sbjct: 203 LNDLYTKLLRAGVDRYICHKMVDALKAKLGSVD-DTELVMRNARQLVSR-IVPMGDGIEV 260 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 D H P ++ ++G GVGKTT I K++ + G+ V L DT+R AA++QLK +A+ Sbjct: 261 DGIH-PKIVALIGPTGVGKTTTIAKIAADHLLRQGVSVGLITLDTYRIAAVEQLKTYANI 319 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK- 223 + E+ + +L A ++ K D++++DTAGR H ++ + + + +R K Sbjct: 320 IK---IPVEVVNQNESLLL-ALRKNLDK--DLVLVDTAGRSHRDTQQIEDLMRFLREEKI 373 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 +++ H VL A+T + L + G I+TK+D ++ GG+ + Sbjct: 374 KVEVHI------VLSASTKEADLNDIMQSFEKVGIDRAIITKLDESSSFGGVFNCLAKRG 427 Query: 284 IPVYFLGVGEGI-NDLEPFVAKDFSAVITGCLDYGEEK 320 +PV + G+ + NDL P F ++TG EEK Sbjct: 428 LPVSYFANGQDVPNDLIPASNHAFFELLTGT--PAEEK 463 >gi|301622214|ref|XP_002940432.1| PREDICTED: signal recognition particle receptor subunit alpha [Xenopus (Silurana) tropicalis] Length = 578 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 30/192 (15%) Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADR-------------TSADFVCSEIGSDAAALAY 183 + G V++AA DTFR+ A++QL+ R T G DAA +A Sbjct: 384 ENGFSVLIAACDTFRAGAVEQLRTHTQRLNSRHPPEKHKGRTMVQLYEKGYGKDAAGIAM 443 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 EA A+ + DV+++DTAGR+ +N+ LM + K+I V + P VL V +A G Sbjct: 444 EAISYARNQAFDVVLVDTAGRMQDNAPLMTALAKLIAV------NVPDLVLFVGEALVGN 497 Query: 244 NALRQVEMFH-AVAGTT---------GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVG 292 A+ Q+ F+ A+A + G+++TK D + G I + P+ F+G G Sbjct: 498 EAVDQLVKFNKALADYSMADKPRLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTG 557 Query: 293 EGINDLEPFVAK 304 + DL AK Sbjct: 558 QTYCDLRLLNAK 569 >gi|183230399|ref|XP_001913435.1| signal recognition particle 54 kDa protein [Entamoeba histolytica HM-1:IMSS] gi|169802916|gb|EDS89786.1| signal recognition particle 54 kDa protein, putative [Entamoeba histolytica HM-1:IMSS] Length = 259 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/213 (26%), Positives = 107/213 (50%), Gaps = 14/213 (6%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYD--VSELIHKMLMPLS 100 +E+E L+ D+ +++V + K ++D+ ++++ D ELI+ ++ P + Sbjct: 17 KEIETSLLGEDVNPIFIRQMVNNIKKKINSEDIPDGIDKRKLIKDSVFEELIN-LVDPKT 75 Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 + F + V+++VG+ G GKTT I KL+ + G K + DTFR+ A +QL++ Sbjct: 76 EAFKPK-KGKTCVLMMVGLQGAGKTTTITKLALYYKNRGYKPAVVGADTFRAGAYEQLQM 134 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A R F + SD +A E + + +K D++++DT+GR + L + + Sbjct: 135 NAKRAGVPFFGIKEESDPVKVASEGVRTFRKEKNDIILVDTSGRHKQDKELFKEMQSVRD 194 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +K P S++ V+D GQ A Q + F Sbjct: 195 AIK------PDSIIFVMDGAIGQAAFGQAKAFK 221 >gi|148704789|gb|EDL36736.1| signal recognition particle 54, isoform CRA_b [Mus musculus] Length = 286 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 6/139 (4%) Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D +A E ++ + + +++I+DT+GR L +M++V + P +++ V Sbjct: 10 DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVSNAIQPD---NIVYV 63 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 +DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+G GE I+ Sbjct: 64 MDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHID 123 Query: 297 DLEPFVAKDFSAVITGCLD 315 D EPF + F + + G D Sbjct: 124 DFEPFKTQPFISKLLGMGD 142 >gi|330948622|gb|EGH48882.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. pisi str. 1704B] Length = 72 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 39/72 (54%), Positives = 48/72 (66%) Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257 I DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q + F+ Sbjct: 1 IADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQAKQFNQTVT 60 Query: 258 TTGLIMTKMDGT 269 TGL +TK+DGT Sbjct: 61 LTGLALTKLDGT 72 >gi|330950745|gb|EGH51005.1| signal recognition particle protein [Pseudomonas syringae Cit 7] Length = 209 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 13/206 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + + +L +D +++ L ++ L+ +D+ + V + V + K A Sbjct: 2 FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNV--KERA 59 Query: 77 KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130 V R L +++ L L N D P VIL+ G+ G GKTT GK Sbjct: 60 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119 Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 L++ + + K VM+ + D +R AAI QL+ A+ F S+I +A A K+A Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIAQAAIKEA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGI 215 + K +DV+I+D AGRLH + +M I Sbjct: 180 RLKFIDVVIVDPAGRLHVDVEMMGEI 205 >gi|237753384|ref|ZP_04583864.1| flagellar biosynthesis regulator FlhF [Helicobacter winghamensis ATCC BAA-430] gi|229375651|gb|EEO25742.1| flagellar biosynthesis regulator FlhF [Helicobacter winghamensis ATCC BAA-430] Length = 466 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 25/217 (11%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAA 146 E++ KM++ S+ + S+ ++I++VG GVGKTT + KL+ + S + KV + Sbjct: 249 EVLRKMVVARSEKLS---SNAKNIIMLVGPTGVGKTTTLAKLAARYSRLLNKNYKVGIIT 305 Query: 147 GDTFRSAAIDQLKIWADRT--SADFV--CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 DT+R A+DQL +A + S D V E S +L Y D ++IDT Sbjct: 306 LDTYRIGAVDQLMFYAKKMKLSIDTVVDTEEFVSALDSLKY----------CDYILIDTV 355 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 G ++ + + + DP+ V V+ ATT L+ + + G L+ Sbjct: 356 GSSQHDRAKLESLKSFVNA----DPNTKIDVSLVMSATTKYEDLKDIYHTFSTLGIDTLV 411 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDL 298 TK+D T G + ++ K PV + G+ + NDL Sbjct: 412 FTKLDETHSYGNVFSLIYETKKPVSYFSTGQEVPNDL 448 >gi|148704788|gb|EDL36735.1| signal recognition particle 54, isoform CRA_a [Mus musculus] Length = 325 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 6/139 (4%) Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D +A E ++ + + +++I+DT+GR L +M++V + P +++ V Sbjct: 49 DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVSNAIQPD---NIVYV 102 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 +DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+G GE I+ Sbjct: 103 MDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHID 162 Query: 297 DLEPFVAKDFSAVITGCLD 315 D EPF + F + + G D Sbjct: 163 DFEPFKTQPFISKLLGMGD 181 >gi|270684409|ref|ZP_06222801.1| cell division protein FtsY-like protein [Haemophilus influenzae HK1212] gi|270316251|gb|EFA28201.1| cell division protein FtsY-like protein [Haemophilus influenzae HK1212] Length = 83 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 35/70 (50%), Positives = 49/70 (70%) Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDA TGQNA+ Q ++F+ G TG+ +TK+DGTA+GG + I K+P+ ++GVGE I Sbjct: 4 LDAGTGQNAISQAKLFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIE 63 Query: 297 DLEPFVAKDF 306 DL F AK+F Sbjct: 64 DLREFNAKEF 73 >gi|149051248|gb|EDM03421.1| signal recognition particle 54 [Rattus norvegicus] Length = 278 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 6/139 (4%) Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D +A E ++ + + +++I+DT+GR L +M++V + P +++ V Sbjct: 2 DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVSNAIQPD---NIVYV 55 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 +DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+G GE I+ Sbjct: 56 MDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHID 115 Query: 297 DLEPFVAKDFSAVITGCLD 315 D EPF + F + + G D Sbjct: 116 DFEPFKTQPFISKLLGMGD 134 >gi|238916769|ref|YP_002930286.1| flagellar biosynthesis protein FlhF [Eubacterium eligens ATCC 27750] gi|238872129|gb|ACR71839.1| flagellar biosynthesis protein FlhF [Eubacterium eligens ATCC 27750] Length = 432 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 114/257 (44%), Gaps = 22/257 (8%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYA---KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 L+ + IG V K +E+++ A K+ ++ +L + + K+++ L P Sbjct: 173 LIYKKMIGNEVDTKYADEIISDIEASLKKESNIDSIL---AAVYQKIILKLGTPKTISLG 229 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWAD---- 163 +P VIL +G GVGKTT I K++ + KV DT+R AA+DQL +A Sbjct: 230 DKPKVILFIGPTGVGKTTTIAKIASHFKLEKETKVAFITSDTYRIAAVDQLNTYASIIDC 289 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + + EIG + FK + ++++DTAGR H + M + +I ++ Sbjct: 290 PVNVAYSADEIGE-----CLDEFKDYE-----LILVDTAGRSHKSEEQMEELDNLIEMIA 339 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 + L TT L + + LI TK+D T G ++ + + Sbjct: 340 SRADEFDLEIYLTLSVTTKYKDLVNIADKYRHIENWALIFTKLDETCYLGNMLNMKLYTG 399 Query: 284 IPVYFLGVGEGI-NDLE 299 P+ + G+ + ND+E Sbjct: 400 APLSYTTSGQNVPNDIE 416 >gi|255099433|ref|ZP_05328410.1| flagellar biosynthesis regulator FlhF [Clostridium difficile QCD-63q42] Length = 338 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 13/185 (7%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 I +VG GVGKTT I KL+ K+ + KV + DT+R A++QLKI+ D + F Sbjct: 146 IALVGPPGVGKTTTIAKLAAKLVFEENKKVGVITIDTYRIGAVEQLKIYTDIMNIPFK-G 204 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 I D LA +A K DV++IDT GR + NS+ + I +I D + Sbjct: 205 VISPDEMELALDAMKDC-----DVVLIDTTGRGYKNSMQILEIKNLI------DKAETDN 253 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 + VL+ TT ++ + + + LI+TK+D T G + I+ + P+ ++ G Sbjct: 254 IHLVLNCTTRESDTKAIIDSYRNVNFKSLIITKLDETITYGSIFNIMNYAQKPISYITTG 313 Query: 293 EGIND 297 + + D Sbjct: 314 QNVPD 318 >gi|169839024|ref|ZP_02872212.1| Signal recognition particle, subunit FFH/SRP54 [candidate division TM7 single-cell isolate TM7a] Length = 219 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 6/140 (4%) Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 +DA + + + ++A+ +IIDTAGRLH + LM + + D P+ +L Sbjct: 12 TDALEIVKQGIEASKAEHATYVIIDTAGRLHIDEQLMHELQDI------KDSFNPNEILL 65 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V+D TGQ+A+ + F+ TG+++TK+DG RGG + + P+ F+ GE + Sbjct: 66 VVDGMTGQDAVNVAKEFNEQLDITGVVLTKLDGDTRGGAALSVKEVAGKPIKFISEGEKL 125 Query: 296 NDLEPFVAKDFSAVITGCLD 315 +D+ PF ++ I G D Sbjct: 126 DDIAPFHPDRLASRILGMGD 145 >gi|260361313|ref|ZP_05774415.1| putative signal recognition particle protein [Vibrio parahaemolyticus K5030] gi|308115526|gb|EFO53066.1| putative signal recognition particle protein [Vibrio parahaemolyticus K5030] Length = 197 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 99/197 (50%), Gaps = 15/197 (7%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + + +I RL +D ++E L ++ L+ +D+ + V ++ V + K A Sbjct: 2 FENLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFVNRV--KEKA 59 Query: 77 KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 V V + L E I + L ++ N + P V+L+ G+ G GKTT +G Sbjct: 60 VGVEVSKSLTPGQEFIKIVQAELEAVMGESNEALNL-AAQPPAVLLMAGLQGAGKTTSVG 118 Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 KLSK + + K V++ + D +R AAI QL+ A DF S +A A Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSPDQKPLDIANAAIDH 178 Query: 189 AQAKKVDVLIIDTAGRL 205 A+ K DVLI+DTAGRL Sbjct: 179 AKKKFYDVLIVDTAGRL 195 >gi|302392374|ref|YP_003828194.1| flagellar biosynthetic protein FlhF [Acetohalobium arabaticum DSM 5501] gi|302204451|gb|ADL13129.1| flagellar biosynthetic protein FlhF [Acetohalobium arabaticum DSM 5501] Length = 360 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 87/309 (28%), Positives = 148/309 (47%), Gaps = 39/309 (12%) Query: 4 QKVASESLSWIRKL---------TKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLI 54 QKV SE L+ ++++ S+ L E + +++ R L G+ +EL Sbjct: 68 QKVESE-LNQVKQMMGNVLQKLEENKLQSSYTNLPENLKEVVD-RLLAQGITDEL----- 120 Query: 55 RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114 ++I +AV K L + +D + + L+ SE I L P+S P V+ Sbjct: 121 ATEILIAVNDK-----LGPKEIEDKEIIKSLF--SEEIKARLNPVS-PITLS-DQESKVV 171 Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 +G GVGKTT + KL+ S K V L DT+R AA++QLK +++ + V E Sbjct: 172 AFIGPTGVGKTTTVAKLAADFSLTKNKDVGLVTADTYRIAAVEQLKTYSEIIN---VPLE 228 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 + ++A L +A + AK D++++DTAGR NN + M+ + + L ++D H V Sbjct: 229 VVYNSAELE-QALDKFAAK--DLVLVDTAGRSQNNEMHMSELDAL---LAKIDVAEKHLV 282 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L + T ++ L + F + G I TK+D T G L+ I+ + ++ G+ Sbjct: 283 LSAI--TKFKDLLDIILSFQQI-GLDKFIFTKLDETKDLGMLVNIIDQFDAELSYITNGQ 339 Query: 294 GI-NDLEPF 301 + D+E F Sbjct: 340 NVPEDIEVF 348 >gi|310659022|ref|YP_003936743.1| flagella-associated protein [Clostridium sticklandii DSM 519] gi|308825800|emb|CBH21838.1| flagella-associated protein [Clostridium sticklandii] Length = 408 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 69/265 (26%), Positives = 133/265 (50%), Gaps = 28/265 (10%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112 L+ I ++++IV E L+K D + + ++I++ S+ N F + + Sbjct: 166 LVEKGISSLLSEEIVNEALSK--YNDCNRDSIF----KVINERFNNFSEN-NMKFLKKYN 218 Query: 113 VILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 V VG GVGKTT + K++ ++ + G ++ DT+R +A++QL+ +A+ + C Sbjct: 219 VF--VGPTGVGKTTTLAKIASNLAIEEGKRIGFMTLDTYRISAVEQLRTYAEILN----C 272 Query: 172 S-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 E+ D A ++ EA K+ +++ D + IDTAGR H N + M + ++I + Sbjct: 273 PIEVAYDKADVS-EAVKRLESR--DSIFIDTAGRSHRNKVHMIELEEIIESI------DE 323 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 V VL A + ++ + ++ +++TKMD T+R G + I+ PV ++ Sbjct: 324 KEVFLVLSANFNKEDIKDILEAYSFIDDFSIVITKMDETSREGLVFDIINAANKPVSYIT 383 Query: 291 VGEGI-NDLEPFVAKDFSAVITGCL 314 G+ + +D+E F DF+ + L Sbjct: 384 YGQNVPDDIEIF---DFNKFVNEFL 405 >gi|167037648|ref|YP_001665226.1| GTP-binding signal recognition particle [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040309|ref|YP_001663294.1| GTP-binding signal recognition particle [Thermoanaerobacter sp. X514] gi|256750761|ref|ZP_05491646.1| GTP-binding signal recognition particle SRP54 G- domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|300914393|ref|ZP_07131709.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter sp. X561] gi|307724371|ref|YP_003904122.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter sp. X513] gi|320116063|ref|YP_004186222.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166854549|gb|ABY92958.1| GTP-binding signal recognition particle SRP54, G- domain [Thermoanaerobacter sp. X514] gi|166856482|gb|ABY94890.1| GTP-binding signal recognition particle SRP54, G- domain [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750344|gb|EEU63363.1| GTP-binding signal recognition particle SRP54 G- domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|300889328|gb|EFK84474.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter sp. X561] gi|307581432|gb|ADN54831.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter sp. X513] gi|319929154|gb|ADV79839.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 341 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 86/192 (44%), Gaps = 15/192 (7%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + + IL +G GVGKTT I K++ + + G VML D FR AA+DQLK + + Sbjct: 145 TEKSKKILFIGPTGVGKTTTIAKIASNLILNEGKNVMLVTADIFRIAAVDQLKTYGEILG 204 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D L Q + +K DV++IDTAGR H + K I LK Sbjct: 205 VPVKVVNNIFDLHKL------QPEFEKYDVVLIDTAGRSHKDE-------KRINELKTFI 251 Query: 227 PHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 +A L ATT L++V + AG LI TK+D T ++ V P Sbjct: 252 KYANCDETYLCLSATTKSEDLKEVIKRYEFAGNYKLIFTKLDETDNYSSILNAVYYSGRP 311 Query: 286 VYFLGVGEGIND 297 + + G+ + D Sbjct: 312 ISYFTNGQIVPD 323 >gi|329575671|gb|EGG57198.1| SRP54-type protein, helical bundle domain protein [Enterococcus faecalis TX1467] Length = 322 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/129 (39%), Positives = 74/129 (57%), Gaps = 8/129 (6%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109 LI +D+G + KI E L ++ K +V++ + +I KM+ + N + Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230 Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +P+ VIL VGVNGVGKTT IGKL+ + G KV++AA DTFR+ AIDQL +W +R S Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAS 290 Query: 167 ADFVCSEIG 175 + V G Sbjct: 291 VEVVRGNAG 299 >gi|296133028|ref|YP_003640275.1| flagellar biosynthetic protein FlhF [Thermincola sp. JR] gi|296031606|gb|ADG82374.1| flagellar biosynthetic protein FlhF [Thermincola potens JR] Length = 389 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 122/259 (47%), Gaps = 26/259 (10%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 + +LI +++ A+A KI++ LL K Y + V+ S L ML L +P Sbjct: 131 QRFHQILIDNEVEEALAAKILKGLL-KTYPAEEPVEGHKLKKS-LEQSMLKILRRPKPIT 188 Query: 107 FSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWA 162 F + V+ ++G GVGKTT I KL+ S K V L DT+R AA++QLK + Sbjct: 189 FKKQGLHQQVVALIGPTGVGKTTTIAKLAATFSIVDKKKVALITADTYRVAAVEQLKTYG 248 Query: 163 DRTSADFVCSEIGSDAAALAY--EAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 EI + Y E + + Q D+++IDTAGR H N + +M Sbjct: 249 ----------EIIGIPVNVVYTPEELRDSIGQHTDKDLILIDTAGRSHKN------VAQM 292 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 + LD +L VL ATT + ++ ++ T L+ TK+D T+ G ++ I Sbjct: 293 AELKAYLDAADVTEILLVLSATTKYKDMLEIINSYSDIPLTKLVFTKLDETSTYGAILNI 352 Query: 279 VVTHKIPVYFLGVGEGIND 297 + + + ++ VG+ + D Sbjct: 353 INKTQKHLSYVTVGQNVPD 371 >gi|289755028|ref|ZP_06514406.1| signal recognition particle protein ffh [Mycobacterium tuberculosis EAS054] gi|289695615|gb|EFD63044.1| signal recognition particle protein ffh [Mycobacterium tuberculosis EAS054] Length = 394 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 85/175 (48%), Gaps = 13/175 (7%) Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYEAFKQAQAKKVDVLIID 200 D R AA++QL++ +R G+ D A+A +A+AK DV+I+D Sbjct: 13 DLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAAGLAEARAKHFDVVIVD 72 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAGRL + LMA IR D P VL VLDA GQ+A+ F G TG Sbjct: 73 TAGRLGIDEELMA-QAAAIR-----DAINPDEVLFVLDAMIGQDAVTTAAAFGEGVGFTG 126 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + +TK+DG ARGG + + +P+ F GE + D + F ++ I G D Sbjct: 127 VALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRILGMGD 181 >gi|126697836|ref|YP_001086733.1| flagellar biosynthesis regulator FlhF [Clostridium difficile 630] gi|115249273|emb|CAJ67086.1| Flagellar biosynthesis regulator FlhF (Flagella-associated GTP-binding protein) [Clostridium difficile] Length = 338 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 13/185 (7%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 I +VG GVGKTT I KL+ K+ + KV + DT+R A++QLKI+ D + F Sbjct: 146 IALVGPPGVGKTTTIAKLAAKLVFEENKKVGVITIDTYRIGAVEQLKIYTDIMNIPF-KG 204 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 I D LA + K DV++IDT GR + NS+ + I +I D + Sbjct: 205 VISPDEMELALDEMKDC-----DVVLIDTTGRGYKNSMQILEIKNLI------DKAETDN 253 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 + VL+ TT ++ + + + LI+TK+D T G + I+ + P+ ++ G Sbjct: 254 IHLVLNCTTRESDTKAIIDSYRNVNFKSLIITKLDETITYGSIFNIMNYAQKPISYITTG 313 Query: 293 EGIND 297 + + D Sbjct: 314 QNVPD 318 >gi|76154974|gb|AAX26359.2| SJCHGC03967 protein [Schistosoma japonicum] Length = 235 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 10/155 (6%) Query: 90 ELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 EL+H ++ P K W + P+VI++VG+ G GKTT KL+ G K + D Sbjct: 82 ELVH-LVDPQVKA--WQPARGSPNVIMLVGLQGCGKTTTATKLAYFYQRKGWKTCMICAD 138 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+ A DQLK A + F S +D +A + ++ K +++I+DT+GR Sbjct: 139 TFRAGAFDQLKQNATKARIPFYGSYTETDPVVIARDGVQKFVEDKFEIIIVDTSGRHRQE 198 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 L +M++V ++ P V+ VLDA+ GQ Sbjct: 199 DSLFE---EMLQVSNAIE---PDHVIYVLDASIGQ 227 >gi|311030110|ref|ZP_07708200.1| flagellar biosynthesis regulator FlhF [Bacillus sp. m3-13] Length = 381 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 89/314 (28%), Positives = 146/314 (46%), Gaps = 37/314 (11%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVRE---ELEDLLIRSDI 58 S QK++S + S I + K F S L++K+ + + ++ D + + LE+ L++S+I Sbjct: 78 SKQKISSPAASRIEQ-DKLFDSI-LEMKKMMKSLTQEKQRDPLLPDFFFHLEEKLLQSEI 135 Query: 59 GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVV 117 ++++E + K + L + E ++L L + F+ D S++ I +V Sbjct: 136 SSLHVEELMETIYEKWLENKTMTDKSLLKLLE--TEVLQSLGEVSFDQD-SYKKKFICLV 192 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLK----VMLAAGDTFRSAAIDQLKIWADRTSADF-VCS 172 G GVGKTT + KL+ +DA LK + DT+R AAI+QLK +A A VC Sbjct: 193 GPTGVGKTTTLAKLA---ADASLKKGKSIGFITTDTYRIAAIEQLKTYASILDAPIEVC- 248 Query: 173 EIGSDAAALAYEAFKQAQAK--KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR-LDPHA 229 + E F A+ K +DV+ IDTAGR N + + LK LD Sbjct: 249 --------YSAEDFSAAKNKLSHLDVVFIDTAGRNFLNE-------RFVEELKEVLDFKE 293 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 + VL T+ + ++++ G I TK D T G + I T++ F+ Sbjct: 294 EMTTFLVLSLTSKMSDMKKITDQFWNVGIHQFIFTKKDETTSIGSMYEISRTYQKSAAFV 353 Query: 290 GVGEGI-NDLEPFV 302 G+ + DL PF Sbjct: 354 TDGQNVPEDLIPFT 367 >gi|255305291|ref|ZP_05349463.1| flagellar biosynthesis regulator FlhF [Clostridium difficile ATCC 43255] Length = 338 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 13/185 (7%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 I +VG GVGKTT I KL+ K+ + KV + DT+R A++QLKI+ D + F Sbjct: 146 IALVGPPGVGKTTTIAKLAAKLVFEENKKVGVITIDTYRIGAVEQLKIYTDIMNIPFK-G 204 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 I D LA + K DV++IDT GR + NS+ + I +I D + Sbjct: 205 VISPDEMELALDEMKDC-----DVVLIDTTGRGYKNSMQILEIKNLI------DKAETDN 253 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 + VL+ TT ++ + + + LI+TK+D T G + I+ + P+ ++ G Sbjct: 254 IHLVLNCTTRESDTKAIIDSYRNVNFKSLIITKLDETITYGSIFNIMNYAQKPISYITTG 313 Query: 293 EGIND 297 + + D Sbjct: 314 QNVPD 318 >gi|218133684|ref|ZP_03462488.1| hypothetical protein BACPEC_01553 [Bacteroides pectinophilus ATCC 43243] gi|217991059|gb|EEC57065.1| hypothetical protein BACPEC_01553 [Bacteroides pectinophilus ATCC 43243] Length = 413 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/251 (27%), Positives = 114/251 (45%), Gaps = 16/251 (6%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112 LI +++ A I+ E+ + K+ S+ +L V + K+++ L +P +P Sbjct: 161 LIDNEVNEKYANAIINEV-SGSIKKEASIDSLLGCVYQ---KIILKLGEPVYMTKGDKPK 216 Query: 113 VILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWAD--RTSADF 169 VI+ +G GVGKTT I KL+ + KV DT+R AA++QL +A + Sbjct: 217 VIMFIGPTGVGKTTTIAKLASYYKLEKQYKVAFITADTYRIAAVEQLNTYASIIECPVNV 276 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V S D A + E FK D++ +DTAGR H + M + ++ ++ L Sbjct: 277 VYS---VDEIAQSLEDFKD-----FDLIFVDTAGRSHKDKEQMLELHELRDMVAGLSDTF 328 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 L ATT + + +A LI TK+D T G ++ I + + + Sbjct: 329 DLECYLTLSATTKYKDMLDITGMYADIPDYRLIFTKLDETCAYGNILNIRMATGAQLSYT 388 Query: 290 GVGEGI-NDLE 299 G+ + ND+E Sbjct: 389 TTGQNVPNDIE 399 >gi|149176709|ref|ZP_01855320.1| GTP-binding signal recognition particle SRP54, G-domain [Planctomyces maris DSM 8797] gi|148844350|gb|EDL58702.1| GTP-binding signal recognition particle SRP54, G-domain [Planctomyces maris DSM 8797] Length = 446 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 108/209 (51%), Gaps = 21/209 (10%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 HR V+ +VG GVGKTT I KL+ ++ D +K+ L DT+R AA++QL+ +A+ Sbjct: 249 HR-KVVALVGPTGVGKTTTIAKLAANFRLRD-NIKMGLVTVDTYRIAAVEQLRTYAE--I 304 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKV--DVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 D + + + +QA + V D+++IDTAGR ++ + + + ++ R + Sbjct: 305 IDLPMKVVSTP------KEMQQALDEMVGLDLVLIDTAGRSPSDDLKIQELERLFREVP- 357 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 +D V V+ T+ L + VA T +I+TK+D G L+ + K+ Sbjct: 358 ID-----EVSLVMSMTSSVKTLEAIAQRFQVARPTSMILTKLDEAPVMGSLLTLSQNVKL 412 Query: 285 PVYFLGVGEGI-NDLEPFVAKDFSAVITG 312 PV +L G+ + +D+EP A + +I G Sbjct: 413 PVRYLTTGQDVPDDIEPANAARMARLILG 441 >gi|229827379|ref|ZP_04453448.1| hypothetical protein GCWU000182_02767 [Abiotrophia defectiva ATCC 49176] gi|229788317|gb|EEP24431.1| hypothetical protein GCWU000182_02767 [Abiotrophia defectiva ATCC 49176] Length = 419 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 68/255 (26%), Positives = 117/255 (45%), Gaps = 26/255 (10%) Query: 52 LLIRSDIGVAVAQKIVEELLTK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 L+ R I V +K V E+ ++ KD + R+L + K+++ L +P D + Sbjct: 166 LIHRQLINNEVDEKYVNEITSEIESTIKKDAQLDRIL---GAVYQKLVLKLGQPSLVDIT 222 Query: 109 H-RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWAD--- 163 + + +G GVGKTT I K++ V L DT+R AA++QL+ +A+ Sbjct: 223 PGKTKYVFFLGPTGVGKTTTIAKIASSFKLKEKRSVGLLTADTYRIAAVEQLRTYANILG 282 Query: 164 -RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 S + SEI EA K+ + +V+++DTAGR N +A + +++ + Sbjct: 283 IPLSVVYSASEIE--------EARKELD--RYEVVLVDTAGRSDKNKEQIAELKRLLNAI 332 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 P V VL ATT N L ++ + LI TK+D T G + I++ Sbjct: 333 ----PEEDREVYLVLSATTKYNDLTRITDVYKNVARYKLIFTKVDETGTIGNIYNILMYT 388 Query: 283 KIPVYFLGVGEGIND 297 + ++ G+ + D Sbjct: 389 GADLSYMTFGQNVPD 403 >gi|295399829|ref|ZP_06809810.1| flagellar biosynthetic protein FlhF [Geobacillus thermoglucosidasius C56-YS93] gi|312111659|ref|YP_003989975.1| flagellar biosynthetic protein FlhF [Geobacillus sp. Y4.1MC1] gi|294978232|gb|EFG53829.1| flagellar biosynthetic protein FlhF [Geobacillus thermoglucosidasius C56-YS93] gi|311216760|gb|ADP75364.1| flagellar biosynthetic protein FlhF [Geobacillus sp. Y4.1MC1] Length = 376 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 71/276 (25%), Positives = 127/276 (46%), Gaps = 24/276 (8%) Query: 28 LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK--DVSVQRVL 85 LK+ T++ + G E+ LL ++ + Q+I+ +LL + Y + + ++V Sbjct: 99 LKQLSTNVRAGFSHYPGPLNEVHHLLANQEVSAPLVQEIMADLLDRWYTSGGNATEKQVF 158 Query: 86 YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VML 144 E+I + L PL PF S + I VVG GVGKTT + K++ K + Sbjct: 159 AWAKEIIKEKLSPL--PFG-GISFQKKYINVVGPTGVGKTTTLAKIAAHCVLHHRKNIAF 215 Query: 145 AAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYEAFKQAQAK--KVDVLIIDT 201 DT+R AAIDQLK +A + VC + + F +A+ K DV++IDT Sbjct: 216 ITTDTYRIAAIDQLKTYAKILNVPLEVCYNL---------QDFHEAKKKLSDRDVVLIDT 266 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AGR + + + +I + ++ V T + ++ + ++ Sbjct: 267 AGRNFRHPQYVKDLQSIIDFDEEME------TFLVFALTAKYDDMKAIYEQFSLIPIDRF 320 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 I TK+D T R G ++ +++ +K+ +L G+ + D Sbjct: 321 IFTKLDETTRYGAMLNLMMEYKVGASYLTNGQNVPD 356 >gi|15606450|ref|NP_213830.1| flagellar biosynthesis FlhF [Aquifex aeolicus VF5] gi|3913659|sp|O67266|FLHF_AQUAE RecName: Full=Flagellar biosynthesis protein flhF; AltName: Full=Flagella-associated GTP-binding protein gi|2983662|gb|AAC07228.1| flagellar biosynthesis FlhF [Aquifex aeolicus VF5] Length = 373 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 116/255 (45%), Gaps = 24/255 (9%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML---MPLSK 101 V+ LE L+I+ +I +A+KI+++ A + +YD + + L + + Sbjct: 109 VKRYLEKLVIK-NISKNIAEKIIQD------ACGYDIDNKIYDFKDEPYTSLRESIEKNI 161 Query: 102 PFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 N +F + P V+ +VG GVGKTT + KL+ KV + + D FR A +QLK Sbjct: 162 KLNEEFIQNPPKVVALVGPTGVGKTTTLAKLAHLFKKNKKKVGIISLDCFRVGAFEQLKA 221 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 +A+ F ++ A + + DV+++DTAGR H + I + + + Sbjct: 222 FAEVLEVPF---KLADSPRAFNIQLLEMDDR---DVILVDTAGRSHYDVIRLKELETYFK 275 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 V + SV L A + + + M + +GLI TK+D T G ++ + Sbjct: 276 V-------SDISVYLTLAANLSELVMYEAIMQFGMFSISGLIFTKLDETPYPGSMVNVAY 328 Query: 281 THKIPVYFLGVGEGI 295 + PV +G+ I Sbjct: 329 RTQYPVVCFTMGQSI 343 >gi|291335672|gb|ADD95278.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C93] Length = 164 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 3/144 (2%) Query: 30 EGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELL-TKRYAKDVSVQRVLYD 87 +G D +S + RLD+ ++E+ SD GV ++I+E + R K++ + V Sbjct: 13 QGAFDTLSGKSRLDESSLLDIEEAFYASDFGVETTEEILESIREAHRENKELRAEGVGEI 72 Query: 88 VSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 ++ K L + +P V+ ++GVNG GKTT KL ++ +G ++L A Sbjct: 73 ARSVLRKTLEGAEGVSMLGQSTEKPEVLCLIGVNGSGKTTTCAKLGYQLKSSGCSLILGA 132 Query: 147 GDTFRSAAIDQLKIWADRTSADFV 170 DTFR+AA +QLK W++R + V Sbjct: 133 CDTFRAAATEQLKEWSNRLDLEIV 156 >gi|219670143|ref|YP_002460578.1| GTP-binding signal recognition particle SRP54 G- domain protein [Desulfitobacterium hafniense DCB-2] gi|219540403|gb|ACL22142.1| GTP-binding signal recognition particle SRP54 G- domain protein [Desulfitobacterium hafniense DCB-2] Length = 412 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 109/214 (50%), Gaps = 19/214 (8%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWAD--RT 165 +P ++ +VG GVGKTT IGKL+ S +V L DT+R AA++QLK + + Sbjct: 214 RKPRIVALVGPTGVGKTTTIGKLAAGFSIVDKRRVALITADTYRVAAVEQLKTFGEIIGV 273 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 D V + G EA ++ + K +++ IDTAGR ++ + M+ ++ L++ Sbjct: 274 PVDVVMTPSG------LREAIQRHEDK--ELIFIDTAGRSPHHDLHMS---ELKAFLEKA 322 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P ++L + AT + R E F + TT LI TK+D T GG ++ ++ +P Sbjct: 323 QPEL--TMLVMSAATQAADLARIYERFEPL--TTHLIFTKLDETMGGGTILNLLERTDLP 378 Query: 286 VYFLGVGEGI-NDLEPFVAKDFSAVITGCLDYGE 318 V ++ G+ + +D+E + + I G D E Sbjct: 379 VAYITNGQNVPDDIEVATPERLTRYILGEGDRRE 412 >gi|297617159|ref|YP_003702318.1| flagellar biosynthetic protein FlhF [Syntrophothermus lipocalidus DSM 12680] gi|297144996|gb|ADI01753.1| flagellar biosynthetic protein FlhF [Syntrophothermus lipocalidus DSM 12680] Length = 386 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 132/295 (44%), Gaps = 25/295 (8%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 A E L +R++ + A + KL+E + R + + L + + + +AQ + Sbjct: 93 ADELLEELREMKQMMADLNHKLEEK-DKLKGMPRSVQSLYKALVNNQVNEKLAFRIAQSV 151 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKT 125 + + T+ D + V +E++ M KP +F+ RP V+ ++G GVGKT Sbjct: 152 KQRIETEEGHHDEDMMGV---CTEVLGSMF---KKPKPIEFNRGRPRVVAMIGPTGVGKT 205 Query: 126 TVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWAD--RTSADFVCSEIGSDAAALA 182 T I KL+ + K V L DT+R AA++QLK +A+ + V G + A Sbjct: 206 TTIAKLAANFALLERKRVGLVTIDTYRIAAVEQLKTYAEIIGVPLEVVFHPEGLETAL-- 263 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 A+ K DV+ IDTAGR N + + + +RV + P +L VL T Sbjct: 264 ------AKHKDKDVIFIDTAGRSPRNEPHINELAEFLRVAE------PDEILLVLSTNTP 311 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 L ++ V L+ TK+D R G ++ + K + ++ G+ + D Sbjct: 312 TLDLLEIYQRFNVVRIDKLVFTKVDECERFGQILNVAYKTKTGLAYITNGQNVPD 366 >gi|255523686|ref|ZP_05390652.1| GTP-binding signal recognition particle SRP54 G-domain protein [Clostridium carboxidivorans P7] gi|296186690|ref|ZP_06855092.1| flagellar biosynthesis protein FlhF [Clostridium carboxidivorans P7] gi|255512555|gb|EET88829.1| GTP-binding signal recognition particle SRP54 G-domain protein [Clostridium carboxidivorans P7] gi|296048727|gb|EFG88159.1| flagellar biosynthesis protein FlhF [Clostridium carboxidivorans P7] Length = 397 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 107/217 (49%), Gaps = 21/217 (9%) Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQ 157 L+KP + ++++VG GVGKTT I KL+ KM+ G KV L DT+R A++Q Sbjct: 195 LTKPMEEN-----DIVVLVGPTGVGKTTTIAKLAGKMALLEGKKVGLITIDTYRIGAVEQ 249 Query: 158 LKIWADRTSADF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 LK +AD + F V I AA+ DV+++DT GR N++ ++ + Sbjct: 250 LKTYADIMNIPFKVVLTIKEMEAAV-------ESMSNCDVILVDTTGRSSKNTMQISELR 302 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 I + +V V+ TT + + + + +I+TK+D T+ G ++ Sbjct: 303 AFIEKVN------TDNVNLVMSCTTKNRDIGVILEGYKPLNYSNIIITKLDETSTYGSIL 356 Query: 277 PIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312 I K P+ F+ G+ + +D++ +K+ + ++ G Sbjct: 357 NICEGSKKPISFVTTGQNVPDDIKFMTSKEITNLVLG 393 >gi|145631517|ref|ZP_01787285.1| Signal recognition particle protein [Haemophilus influenzae R3021] gi|144982862|gb|EDJ90379.1| Signal recognition particle protein [Haemophilus influenzae R3021] Length = 274 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 62/117 (52%), Gaps = 6/117 (5%) Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 +DTAGRLH ++ +M I ++ L P L +DA TGQ+A + F+ Sbjct: 1 MDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAKAFNEALPL 54 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TG+I+TK+DG ARGG + I P+ FLGVGE LEPF ++ I G D Sbjct: 55 TGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRILGMGD 111 >gi|254973930|ref|ZP_05270402.1| flagellar biosynthesis regulator FlhF [Clostridium difficile QCD-66c26] gi|255091316|ref|ZP_05320794.1| flagellar biosynthesis regulator FlhF [Clostridium difficile CIP 107932] gi|255312974|ref|ZP_05354557.1| flagellar biosynthesis regulator FlhF [Clostridium difficile QCD-76w55] gi|255515733|ref|ZP_05383409.1| flagellar biosynthesis regulator FlhF [Clostridium difficile QCD-97b34] gi|255648827|ref|ZP_05395729.1| flagellar biosynthesis regulator FlhF [Clostridium difficile QCD-37x79] gi|306518941|ref|ZP_07405288.1| flagellar biosynthesis regulator FlhF [Clostridium difficile QCD-32g58] Length = 338 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 13/185 (7%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 I +VG GVGKTT I KL+ K+ + KV + DT+R A++QLKI+ D + F Sbjct: 146 IALVGPPGVGKTTTIAKLAAKLVFEENKKVGVITIDTYRIGAVEQLKIYTDIMNIPF-KG 204 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 I D LA + K DV++IDT GR + NS+ + I +I D + Sbjct: 205 VISPDEMELALDEMKDC-----DVVLIDTTGRGYKNSMQILEIKNLI------DKAETDN 253 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 + V++ TT ++ + + + LI+TK+D T G + I+ + P+ ++ G Sbjct: 254 IHLVVNCTTRESDTKAIIDSYRNVNFKSLIITKLDETITYGSIFNIMNYAQKPISYITTG 313 Query: 293 EGIND 297 + + D Sbjct: 314 QNVPD 318 >gi|260682045|ref|YP_003213330.1| flagellar biosynthesis regulator FlhF [Clostridium difficile CD196] gi|260685643|ref|YP_003216776.1| flagellar biosynthesis regulator FlhF [Clostridium difficile R20291] gi|260208208|emb|CBA60561.1| signal recognition particle complex, GTP-binding subunit [Clostridium difficile CD196] gi|260211659|emb|CBE01924.1| signal recognition particle complex, GTP-binding subunit [Clostridium difficile R20291] Length = 337 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 13/185 (7%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 I +VG GVGKTT I KL+ K+ + KV + DT+R A++QLKI+ D + F Sbjct: 145 IALVGPPGVGKTTTIAKLAAKLVFEENKKVGVITIDTYRIGAVEQLKIYTDIMNIPF-KG 203 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 I D LA + K DV++IDT GR + NS+ + I +I D + Sbjct: 204 VISPDEMELALDEMKDC-----DVVLIDTTGRGYKNSMQILEIKNLI------DKAETDN 252 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 + V++ TT ++ + + + LI+TK+D T G + I+ + P+ ++ G Sbjct: 253 IHLVVNCTTRESDTKAIIDSYRNVNFKSLIITKLDETITYGSIFNIMNYAQKPISYITTG 312 Query: 293 EGIND 297 + + D Sbjct: 313 QNVPD 317 >gi|89895719|ref|YP_519206.1| hypothetical protein DSY2973 [Desulfitobacterium hafniense Y51] gi|89335167|dbj|BAE84762.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 412 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 109/214 (50%), Gaps = 19/214 (8%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWAD--RT 165 +P ++ +VG GVGKTT IGKL+ S +V L DT+R AA++QLK + + Sbjct: 214 RKPRIVALVGPTGVGKTTTIGKLAAGFSIVDKRRVALITADTYRVAAVEQLKTFGEIIGV 273 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 D V + G EA ++ + K +++ IDTAGR ++ + M+ ++ L++ Sbjct: 274 PVDVVMTPSG------LREAIQRHEDK--ELIFIDTAGRSPHHDLHMS---ELKAFLEKA 322 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P ++L + AT + R E F + TT LI TK+D T GG ++ ++ +P Sbjct: 323 QPEL--TMLVMSAATQAADLARIYERFEPL--TTHLIFTKLDETIGGGTILNLLERTDLP 378 Query: 286 VYFLGVGEGI-NDLEPFVAKDFSAVITGCLDYGE 318 V ++ G+ + +D+E + + I G D E Sbjct: 379 VAYITNGQNVPDDIEVATPERLTRYILGEGDRRE 412 >gi|114566405|ref|YP_753559.1| hypothetical protein Swol_0870 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337340|gb|ABI68188.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 395 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 89/202 (44%), Gaps = 21/202 (10%) Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLK 159 KP + ++ +VG GVGKTT I KL+ MS G +V L DT+R +A QL+ Sbjct: 189 KPIELQRDKKGALVFMVGPTGVGKTTTIAKLAANMSFLEGKEVALITLDTYRVSAAQQLR 248 Query: 160 IWAD----RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 +AD S F ++G EA KQ Q K D++ +DTAGR M + Sbjct: 249 TFADIIGIPISVVFNPQDLG--------EAIKQYQKK--DIIFVDTAGRSPYKDEHMGEL 298 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 I P + VL TT L + + G +I TK+D + G + Sbjct: 299 QDFIEAAN------PDETILVLSVTTDSRDLINIYQQFNLIGVDKIIFTKLDESCNYGRI 352 Query: 276 IPIVVTHKIPVYFLGVGEGIND 297 + + + P+ +L G+ + D Sbjct: 353 LNTIYHIRKPIAYLTTGQNVPD 374 >gi|326389462|ref|ZP_08211029.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter ethanolicus JW 200] gi|325994467|gb|EGD52892.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter ethanolicus JW 200] Length = 341 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 93/212 (43%), Gaps = 19/212 (8%) Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAA 146 + E I + P K N + S + IL +G GVGKTT I K++ + + G +ML Sbjct: 129 LKERIEAFMGPPQK-LNTEKSKK---ILFIGPTGVGKTTTIAKIASNLILNEGKNIMLVT 184 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 D FR AA+DQLK + + D L Q + +K D ++IDTAGR H Sbjct: 185 ADIFRIAAVDQLKTYGEILGVPVKVVNNIFDLHKL------QPELEKYDAVLIDTAGRSH 238 Query: 207 NNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 + K I LK +A L ATT L++V + AG LI TK Sbjct: 239 KDE-------KRINELKTFIKYANCDETYLCLSATTKSEDLKEVIKRYEFAGDYKLIFTK 291 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 +D T ++ V P+ + G+ + D Sbjct: 292 LDETDNYSSILNAVYYSGRPISYFTNGQIVPD 323 >gi|307264888|ref|ZP_07546450.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter wiegelii Rt8.B1] gi|306920146|gb|EFN50358.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter wiegelii Rt8.B1] Length = 341 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 93/212 (43%), Gaps = 19/212 (8%) Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAA 146 + E I + P K N + S + IL +G GVGKTT I K++ + + G +ML Sbjct: 129 LKERIEAFMGPPQK-LNTEKSKK---ILFIGPTGVGKTTTIAKIASNLILNEGKNIMLVT 184 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 D FR AA+DQLK + + D L Q + +K D ++IDTAGR H Sbjct: 185 ADIFRIAAVDQLKTYGEILGVPVKVVNNIFDLHKL------QPELEKYDAVLIDTAGRSH 238 Query: 207 NNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 + K I LK +A L ATT L++V + AG LI TK Sbjct: 239 KDE-------KRINELKTFIKYANCDETYLCLSATTKSEDLKEVIKRYEFAGDYKLIFTK 291 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 +D T ++ V P+ + G+ + D Sbjct: 292 LDETDNYSSILNAVYYSGRPISYFTNGQIVPD 323 >gi|196247618|ref|ZP_03146320.1| GTP-binding signal recognition particle SRP54 G- domain [Geobacillus sp. G11MC16] gi|196212402|gb|EDY07159.1| GTP-binding signal recognition particle SRP54 G- domain [Geobacillus sp. G11MC16] Length = 371 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 118/253 (46%), Gaps = 18/253 (7%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAK--DVSVQRVLYDVSELIHKMLMPLSKPFNW 105 E+E L+R + + +++++ LL + Y + S V E++ ML L PF Sbjct: 114 EVERRLVRQGMSESYVREVMDRLLERWYTDKGERSAAVVSEWAKEVVRDMLSSL--PFAE 171 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 + +VIL+ G GVGKTT + K++ + + + G KV DT+R AAIDQLK +A Sbjct: 172 AARQKKYVILL-GPTGVGKTTTLAKMAGRAVLEQGKKVGFITTDTYRIAAIDQLKTYAHI 230 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 A F D + A K+ A D++ +DTAGR N +A + + I Sbjct: 231 LHAPFAVCYNADD-----FRAAKRNLA-DCDLVFVDTAGRNFRNPQYVAELQQTIEF--- 281 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 + L VL AT + ++ V + LI+TK+D T G + +++ ++ Sbjct: 282 ---DSETETLLVLAATGKYDDMKAVYDRFSGLPLDRLIITKLDETDSYGAVFNLLLDSRL 338 Query: 285 PVYFLGVGEGIND 297 + G+ + D Sbjct: 339 GAAYFTNGQNVPD 351 >gi|284106148|ref|ZP_06386246.1| signal recognition particle-docking protein FtsY [Candidatus Poribacteria sp. WGA-A3] gi|283830083|gb|EFC34351.1| signal recognition particle-docking protein FtsY [Candidatus Poribacteria sp. WGA-A3] Length = 85 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 36/76 (47%), Positives = 48/76 (63%) Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 VL LD T GQNA+ Q + FH G TGL +TK+DGTA+GG ++ I IPV +G+ Sbjct: 1 EVLLTLDGTIGQNAVAQAKQFHEAIGVTGLALTKLDGTAKGGVVLAIAEELAIPVRLIGI 60 Query: 292 GEGINDLEPFVAKDFS 307 GE DL+ F A+ F+ Sbjct: 61 GEQEEDLQDFRAQAFA 76 >gi|34557958|ref|NP_907773.1| flagellar biosynthesis regulator FlhF [Wolinella succinogenes DSM 1740] gi|34483676|emb|CAE10673.1| FLAGELLAR BIOSYNTHESIS PROTEIN FLHF FLAGELLA ASSOCIATED GTP-BINDINGPROTEIN [Wolinella succinogenes] Length = 467 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 21/190 (11%) Query: 113 VILVVGVNGVGKTTVIGKLS---KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT--SA 167 ++++VG GVGKTT + KL+ +M KV + DT+R A+DQL +A + S Sbjct: 267 IVMLVGPTGVGKTTTLAKLAARYSRMMSKNYKVGIITLDTYRIGAVDQLMFYAKKMKLSI 326 Query: 168 DFVC--SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 D V +E +L Y D ++IDT G ++ + M+R Sbjct: 327 DTVVDPTEFVGAINSLKY----------CDYILIDTVGSSQHDKQKI----DMLRSYVNS 372 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 DPH V V+ +TT LR + +V LI+TK+D T G + ++ K P Sbjct: 373 DPHCSIDVSLVVSSTTKYEDLRDIYHTFSVLNVDTLILTKLDETRGFGNVFSLIHETKKP 432 Query: 286 VYFLGVGEGI 295 V +L +G+ + Sbjct: 433 VSYLSIGQEV 442 >gi|163782185|ref|ZP_02177184.1| flagellar biosynthesis FlhF [Hydrogenivirga sp. 128-5-R1-1] gi|159882717|gb|EDP76222.1| flagellar biosynthesis FlhF [Hydrogenivirga sp. 128-5-R1-1] Length = 380 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 133/293 (45%), Gaps = 43/293 (14%) Query: 27 KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV---AQKIVEELLTKRYAKDVSVQR 83 +LK +++++ + R D +E R D+G + AQ+++ ++ + KDV+ + Sbjct: 79 RLKSTLSEVMKNVRSQDEEKE-----TSRRDVGEGLSMRAQRVLSRMVYRGVRKDVARRL 133 Query: 84 VL----YDVS-------ELIHKMLMPLSKPFNWD--------FSHRPHVILVVGVNGVGK 124 V YD+ E I+ LM + F + F + P +++++G GVGK Sbjct: 134 VEEACGYDIELGKLDFKEEIYPSLM---ESFRKNIVIEGERVFRNTPRIMVLIGPTGVGK 190 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT I KLS AG + + D++R A++QL+ + + F +D + Sbjct: 191 TTTIAKLSYLFKRAGKRPGVITLDSYRVGAVEQLRAFINIMELPFRV----ADTPEEFLK 246 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 + ++ + D++++DTAGR ++ + + LK A + L A + Sbjct: 247 SLEEMDNR--DLILVDTAGRSQHDRLRLNE-------LKLFLESAETQIYLTLSANLSEL 297 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 + +V M + GLI +K+D T+ G +I + K+P+ G+ + D Sbjct: 298 VMYEVIMQFGMFPIKGLIFSKLDETSYPGNVINVAYRTKLPILCFTTGQTVPD 350 >gi|242381496|emb|CAY39211.1| signal recognition particle docking protein [Streptomyces clavuligerus ATCC 27064] Length = 328 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 77/214 (35%), Positives = 120/214 (56%), Gaps = 9/214 (4%) Query: 16 KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----- 70 +L A + L +G+ ++S LD+ EE+E+ L+ +D+GVA Q++VE L Sbjct: 118 RLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLTADVGVAPTQELVERLRERVK 177 Query: 71 -LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L R ++ ++ + + + D P V++VVGVNG GKTT G Sbjct: 178 VLGTRTPDELRTLLREELLTLVGTDLDRAVKTESGLDT---PGVVMVVGVNGTGKTTTTG 234 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL++ + G V+L A DTFR+AA DQL+ W +R A V G D A++A++A K+ Sbjct: 235 KLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEG 294 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 A+ DV++IDTAGRLH + LM +GK+ RV++ Sbjct: 295 IAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVE 328 >gi|289578413|ref|YP_003477040.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter italicus Ab9] gi|297544689|ref|YP_003676991.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528126|gb|ADD02478.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter italicus Ab9] gi|296842464|gb|ADH60980.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 341 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 89/194 (45%), Gaps = 19/194 (9%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + + IL +G GVGKTT I K++ + + G +ML D FR AA+DQLK + + Sbjct: 145 TEKSKKILFIGPTGVGKTTTIAKIASNLILNEGKNIMLVTADIFRIAAVDQLKTYGEILG 204 Query: 167 ADF-VCSEIGSDAAALAYEAFK-QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 V + I +E K Q + +K DV++IDTAGR H + K I LK Sbjct: 205 VPVKVVNNI--------FELHKLQLEFEKYDVVLIDTAGRSHKDE-------KRINELKT 249 Query: 225 LDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 +A L ATT L++V + A LI TK+D T ++ V Sbjct: 250 FIKYANCDETYLCLSATTKSEDLKEVIKRYEFAENYRLIFTKLDETDNYSSILNAVYYSG 309 Query: 284 IPVYFLGVGEGIND 297 P+ + G+ + D Sbjct: 310 RPISYFTNGQIVPD 323 >gi|224419051|ref|ZP_03657057.1| flagellar biosynthesis regulator FlhF [Helicobacter canadensis MIT 98-5491] Length = 265 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 99/217 (45%), Gaps = 25/217 (11%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS---KKMSDAGLKVMLAA 146 E++ KM+ ++ N S+ +++++VG GVGKTT + KL+ +M + KV + Sbjct: 47 EVLRKMVYARTENLN---SNVKNIMMLVGPTGVGKTTTLAKLAARYSRMLNKNYKVGIIT 103 Query: 147 GDTFRSAAIDQLKIWADRT--SADFVCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTA 202 DT+R A+DQL +A + S D V E F A K D ++IDT Sbjct: 104 LDTYRIGAVDQLMFYAKKMKLSIDTVVDT----------EEFINALDSLKYCDYILIDTV 153 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 G ++ + + + DP+ V V+ ATT L+ + + G LI Sbjct: 154 GSSQHDRSKLESLKSFVNA----DPNTKIDVSLVMSATTKYEDLKDIYHTFSTLGIDTLI 209 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDL 298 TK+D T G + ++ K + +G+ + NDL Sbjct: 210 FTKLDETHSYGNIFSLIYETKKATSYFSIGQEVPNDL 246 >gi|309808797|ref|ZP_07702682.1| Signal peptide binding domain protein [Lactobacillus iners LactinV 01V1-a] gi|308167923|gb|EFO70056.1| Signal peptide binding domain protein [Lactobacillus iners LactinV 01V1-a] Length = 300 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 6/128 (4%) Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 QA D +IIDTAGRL + LM + ++ V P +++ V DA TGQ A Sbjct: 3 QADRNHNDYVIIDTAGRLEIDDQLMDELKNIVDVAH------PENIILVADAMTGQVAAT 56 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 E F++ TGLI+TK+DG RGG + I +P+ F G GE + +L+ F + Sbjct: 57 VAEGFNSKLKLTGLILTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTELDTFHPDRMA 116 Query: 308 AVITGCLD 315 + I G D Sbjct: 117 SRILGMGD 124 >gi|313142558|ref|ZP_07804751.1| flagellar biosynthesis regulator FlhF [Helicobacter canadensis MIT 98-5491] gi|313131589|gb|EFR49206.1| flagellar biosynthesis regulator FlhF [Helicobacter canadensis MIT 98-5491] Length = 252 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 99/217 (45%), Gaps = 25/217 (11%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS---KKMSDAGLKVMLAA 146 E++ KM+ ++ N S+ +++++VG GVGKTT + KL+ +M + KV + Sbjct: 34 EVLRKMVYARTENLN---SNVKNIMMLVGPTGVGKTTTLAKLAARYSRMLNKNYKVGIIT 90 Query: 147 GDTFRSAAIDQLKIWADRT--SADFVCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTA 202 DT+R A+DQL +A + S D V E F A K D ++IDT Sbjct: 91 LDTYRIGAVDQLMFYAKKMKLSIDTVVDT----------EEFINALDSLKYCDYILIDTV 140 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 G ++ + + + DP+ V V+ ATT L+ + + G LI Sbjct: 141 GSSQHDRSKLESLKSFVNA----DPNTKIDVSLVMSATTKYEDLKDIYHTFSTLGIDTLI 196 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDL 298 TK+D T G + ++ K + +G+ + NDL Sbjct: 197 FTKLDETHSYGNIFSLIYETKKATSYFSIGQEVPNDL 233 >gi|237751041|ref|ZP_04581521.1| flagellar biosynthesis regulator FlhF [Helicobacter bilis ATCC 43879] gi|229373486|gb|EEO23877.1| flagellar biosynthesis regulator FlhF [Helicobacter bilis ATCC 43879] Length = 482 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 104/209 (49%), Gaps = 21/209 (10%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGD 148 E++ KM+ +P + D + + ++++VG GVGKTT + KL+ + S + KV + D Sbjct: 267 EVLRKMVY--CRPESKDMTKK--IMMLVGPTGVGKTTALAKLAARFSLEKKAKVGIITLD 322 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLH 206 ++R A+ QL+ +A+R S +A E F QA + D +++DTAGR Sbjct: 323 SYRIGALQQLEWYAERMRI--------SIQMVVAPEEFLQALDSLRYCDYILVDTAGRSQ 374 Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266 N+S +A I K ++ +++ V+ ATT LR + ++ LI +K+ Sbjct: 375 NDSERIAQIKKYLQGDYKINTSL------VMSATTKFEDLRDIYDAFSILNLDTLIFSKL 428 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 D + G + + K P+ + +G+ + Sbjct: 429 DESRGLGNIFSLAYETKKPISYFSIGQEV 457 >gi|311068162|ref|YP_003973085.1| flagellar biosynthesis regulator FlhF [Bacillus atrophaeus 1942] gi|310868679|gb|ADP32154.1| flagellar biosynthesis regulator FlhF [Bacillus atrophaeus 1942] Length = 368 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 71/265 (26%), Positives = 120/265 (45%), Gaps = 30/265 (11%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 L+D I+ I +V +++ + ++ A D++ + V+ + +++ + L P + W + Sbjct: 121 LQDAGIKDSIKTSVMSRLLRDSIS---AGDLTEENVVRKLQDVLCEALPPKDR---WQEA 174 Query: 109 HRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 I++ G G GKTT + KL+ M D K+ DT+R AA++QLK +A+ A Sbjct: 175 ISSQYIVLFGSTGAGKTTTLAKLAASSMLDKHKKIAFITTDTYRIAAVEQLKTYAELLQA 234 Query: 168 DF-VCSEIGSDAAALAYEAFKQAQA--KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 VC E F QA+ + D + IDTAGR + I LK Sbjct: 235 PMEVC---------YTKEEFLQAKETFSEYDHVFIDTAGRNFKEQ-------QYIEELKE 278 Query: 225 LDP--HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 P ++ S L VL AT+ ++ + + I TK D TA G + I+ Sbjct: 279 TIPFENSIQSFL-VLSATSKYEDMKDIVKRFSSVPVNQFIFTKADETASLGSVFHILAES 337 Query: 283 KIPVYFLGVGEGI-NDLEPFVAKDF 306 KI F+ G+ + D++ +DF Sbjct: 338 KIGAGFITNGQNVPEDIQSVSPQDF 362 >gi|319649546|ref|ZP_08003702.1| hypothetical protein HMPREF1013_00306 [Bacillus sp. 2_A_57_CT2] gi|317398708|gb|EFV79390.1| hypothetical protein HMPREF1013_00306 [Bacillus sp. 2_A_57_CT2] Length = 376 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 115/255 (45%), Gaps = 30/255 (11%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRY-----AKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 +L +I +V +++ LL K Y AKD + L++ ELI ++ PF Sbjct: 124 ILDEQEIDKSVQDHVLQALLEKWYLRGANAKDSEIDAWLHE--ELIKQIE---DIPFEG- 177 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 S I V G GVGKTT + K++ + + K DT+R AAIDQLK +A Sbjct: 178 ISFSKKYINVAGPTGVGKTTTLAKMAAECVIKHRKKAAFITADTYRIAAIDQLKTYASIL 237 Query: 166 SADF-VCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 + VC I E F+QA + K+ DV++IDTAGR N + + +I Sbjct: 238 NMPLEVCYTI---------EDFRQAADKLKEFDVVLIDTAGRNFRNKQYVEDLKNVIDFE 288 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 ++ VL T+ Q + ++ ++ LI TK D T+ G + I+ + Sbjct: 289 NEME------TFLVLSLTSKQKDMEEIYNQFSIIDIDKLIFTKADETSTYGSMYNIIHKY 342 Query: 283 KIPVYFLGVGEGIND 297 K ++ G+ + D Sbjct: 343 KKGAAYITNGQDVPD 357 >gi|253827991|ref|ZP_04870876.1| flagellar biosynthesis protein [Helicobacter canadensis MIT 98-5491] gi|253511397|gb|EES90056.1| flagellar biosynthesis protein [Helicobacter canadensis MIT 98-5491] Length = 465 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 21/215 (9%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAA 146 E++ KM+ ++ N S+ +++++VG GVGKTT + KL+ + S + KV + Sbjct: 247 EVLRKMVYARTENLN---SNVKNIMMLVGPTGVGKTTTLAKLAARYSRMLNKNYKVGIIT 303 Query: 147 GDTFRSAAIDQLKIWADRT--SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 DT+R A+DQL +A + S D V + ++ A ++ K D ++IDT G Sbjct: 304 LDTYRIGAVDQLMFYAKKMKLSIDTV---VDTEEFINALDSLKYC-----DYILIDTVGS 355 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 ++ + + + DP+ V V+ ATT L+ + + G LI T Sbjct: 356 SQHDRSKLESLKSFVNA----DPNTKIDVSLVMSATTKYEDLKDIYHTFSTLGIDTLIFT 411 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDL 298 K+D T G + ++ K + +G+ + NDL Sbjct: 412 KLDETHSYGNIFSLIYETKKATSYFSIGQEVPNDL 446 >gi|300871799|ref|YP_003786672.1| flagellar biosynthesis regulator FlhF [Brachyspira pilosicoli 95/1000] gi|300689500|gb|ADK32171.1| flagellar biosynthesis regulator, FlhF [Brachyspira pilosicoli 95/1000] Length = 606 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 104/217 (47%), Gaps = 22/217 (10%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 D + +++ VG GVGKTT I K++ + +G KV D +R AA+DQL+ +A Sbjct: 404 DIGSKKKIVVFVGPTGVGKTTTIPKIAAQYMRSGKKVSFVTIDNYRIAAVDQLQRYASIM 463 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVD---VLIIDTAGRLHNNSILMAGIGKMIRVL 222 F S AL +A+ +K+D +L IDT GR + + + K + Sbjct: 464 KVPFTS---ASTPEAL------RAEIRKLDSSSLLFIDTMGRSPKSVEEIVSMSKYFNTV 514 Query: 223 KRLDPHAPHSVLQVLDATTG-QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 R D V V+ +T ++AL+ + F A G+I+TK+D T + + Sbjct: 515 GRFD----MDVQLVMSSTAKYKDALKIMNAFKP-ANYKGIILTKVDETDYLASSLCAISK 569 Query: 282 HKIPVYFLGVGEGI-NDLEPFVAKDFS-AVITGCLDY 316 K+P+ ++ G+G+ D+ P AK ++ +I G Y Sbjct: 570 SKVPITYVTYGQGVPKDIAP--AKRYAHKMIEGLFGY 604 >gi|95929869|ref|ZP_01312610.1| GTP-binding signal recognition particle SRP54, G-domain [Desulfuromonas acetoxidans DSM 684] gi|95134165|gb|EAT15823.1| GTP-binding signal recognition particle SRP54, G-domain [Desulfuromonas acetoxidans DSM 684] Length = 437 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 68/259 (26%), Positives = 127/259 (49%), Gaps = 22/259 (8%) Query: 42 DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPL 99 D + + L L I ++ +A +L TK+ A D +V + ++EL+ L Sbjct: 178 DQQIHDGLTRLGIEAEAASTIAHYASSQLTTKQIA-DPAVLNAFFAKTIAELVQTTGSIL 236 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQL 158 +P S R I ++G GVGKTT I KL+ + G +V L DT+R AA++QL Sbjct: 237 PQPGE---SKR---IALIGPTGVGKTTTIAKLAASHLLAGGKRVALVTIDTYRIAAVEQL 290 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 K++ + + + E+ +A L +E ++ K D+++IDTAGR +S+ + + + Sbjct: 291 KVYGEIMN---LPVEVVMNADQL-HEVLERHSDK--DLVLIDTAGRSPKDSVSLQELEEF 344 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 + V ++ H V+ ATT + L ++ + +++TK+D G L+ I Sbjct: 345 LHVDPNIEAHL------VMSATTRERDLYEIYGRFSALSPQSMLLTKLDECNSLGVLLNI 398 Query: 279 VVTHKIPVYFLGVGEGIND 297 + + P+ +L G+ + + Sbjct: 399 HLRNNCPISYLANGQKVPE 417 >gi|28211315|ref|NP_782259.1| flagellar biosynthesis regulator FlhF [Clostridium tetani E88] gi|28203755|gb|AAO36196.1| flagellar biosynthesis protein flhF [Clostridium tetani E88] Length = 377 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 66/268 (24%), Positives = 120/268 (44%), Gaps = 28/268 (10%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107 E++ +L +DI + +KI++EL + +++E + K + Sbjct: 130 EIKSILKDNDISEDIIEKILDEL------------NEVENITEALEKTKEFIEDRVRVSS 177 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +++VG GVGKTT I KL+ ++S KV L DT+R A++QLK +AD Sbjct: 178 EDLKGAVVLVGPTGVGKTTTIAKLAGRLSLVEKKKVGLITVDTYRIGAVEQLKTYADIMK 237 Query: 167 ADF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 F V I A+ K +V+++DT GR N + ++ + I + Sbjct: 238 IPFKVVFSIKDMEDAIE-------DMKNCEVILVDTTGRSSKNVMQISELRAFIEKVNSE 290 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 + H V+ +TT + + + G +I+TK+D T G ++ I + K P Sbjct: 291 NIHL------VISSTTKNKDIDSIVEGYKTLGYKSVIITKLDETTTYGSILNIANSTKKP 344 Query: 286 VYFLGVGEGI-NDLEPFVAKDFSAVITG 312 + F+ G+ + D+ K+ + +I G Sbjct: 345 ISFITTGQNVPEDIRLVTPKEITGLILG 372 >gi|225850279|ref|YP_002730513.1| flagellar biosynthetic protein FlhF [Persephonella marina EX-H1] gi|225646263|gb|ACO04449.1| flagellar biosynthetic protein FlhF [Persephonella marina EX-H1] Length = 374 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 70/275 (25%), Positives = 132/275 (48%), Gaps = 27/275 (9%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK--------MLMPL 99 EL + L+ D+ VA+K+V+E D+ R +D++ L K + Sbjct: 116 ELINQLLNRDVLPDVAKKLVKEGC----GLDIDTNR--WDLNTLTSKEALIKGIRKYIKF 169 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAAIDQL 158 + PF+ + ++ VG GVGKTT + K+ S + + +KV + + DTF+ A Q Sbjct: 170 TGPFDQE-KEGLKILTFVGPTGVGKTTNLFKIASHFVINQKMKVAVISTDTFKVGATQQA 228 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 +I+A+ + F + S++ L ++ + D ++IDT GR H + +G++ Sbjct: 229 RIYANILNIPFYSA---SESKKLKSTV---SELENYDFILIDTVGRSHYD---YWRLGEI 279 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +L L + H VL V ++A V + + L+ TK+D T++ G L+ + Sbjct: 280 KEILGDLSENM-HIVLTVSCNFKNEDAFEVVNRYSSFFDIDSLLFTKIDETSKPGLLLNL 338 Query: 279 VVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312 V KIPV ++ G+ + D++ ++ ++ I G Sbjct: 339 PVETKIPVSYISTGQRVPEDIKILKPENITSYILG 373 >gi|188586040|ref|YP_001917585.1| GTP-binding signal recognition particle SRP54 G- domain [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350727|gb|ACB84997.1| GTP-binding signal recognition particle SRP54 G- domain [Natranaerobius thermophilus JW/NM-WN-LF] Length = 466 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 121/258 (46%), Gaps = 23/258 (8%) Query: 51 DLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSH 109 DLL+ D+ +AQ+++ + + + + + Q + ++ +I K L P + Sbjct: 210 DLLLEHDVIDQLAQELISQTMKEMDFRGLEDEQAFVRELKTIIGKKLSEQVTPLKDKNTT 269 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK---MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P +I ++G GVGKTT + KL+ + M +A +V L DT+R AA++QLK + D S Sbjct: 270 GPRIISMIGPTGVGKTTTVAKLAARHTLMENA--EVGLITIDTYRIAAVEQLKTYGDILS 327 Query: 167 ADFVCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + + K A + K D++IIDTAGR H N + M + I Sbjct: 328 LPV--------EVVMTPQELKDAMHKLKDKDLIIIDTAGRSHKNEMQMKELKGFIET--- 376 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 +PH H VL + T L+ + + LI+TK D T G L+ ++ + Sbjct: 377 CEPHINHLVLSL---GTKYKDLKNIIAKYNHINFNSLILTKTDETDNLGNLLNLLWEFQT 433 Query: 285 PVYFLGVGEGI-NDLEPF 301 ++ G+ + +DLE F Sbjct: 434 GCSYVTTGQNVPDDLEEF 451 >gi|253682194|ref|ZP_04862991.1| flagellar biosynthetic protein FlhF [Clostridium botulinum D str. 1873] gi|253561906|gb|EES91358.1| flagellar biosynthetic protein FlhF [Clostridium botulinum D str. 1873] Length = 382 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 67/270 (24%), Positives = 126/270 (46%), Gaps = 34/270 (12%) Query: 49 LEDLLIRSDIGVAVAQKIVE--ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 +E++L SD+ V KI+ E T+ + V++ + D++ + H Sbjct: 136 IEEMLEESDLNKNVIAKILSIVENNTEDIDEKEKVRKAIKDITSINH------------- 182 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADR 164 + ++++VG GVGKTT I KL+ K++ D KV L DT+R AI+QL +A+ Sbjct: 183 -TKMEGIVVLVGPTGVGKTTTIAKLAGKLALIDKK-KVGLITVDTYRIGAIEQLSTYANI 240 Query: 165 TSADF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 S F I AAL + K+ DV+++DT GR N + +A + I+ Sbjct: 241 MSIPFESVFSIKEMEAAL-------DRMKECDVVLVDTTGRSSKNIMQIAELNAFIQ--- 290 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 ++ V+ +TT + + + +I+TK+D T G ++ I+ Sbjct: 291 ---KTNTENIYLVISSTTKDRDVESIVEGYKTLNYANVIITKLDETTTYGSILNILTKAN 347 Query: 284 IPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312 P+ F+ G+ + +D + +++ + ++ G Sbjct: 348 KPLSFVTTGQNVPDDFKNITSEEIARLVLG 377 >gi|328948395|ref|YP_004365732.1| GTP-binding signal recognition particle SRP54 G- domain protein [Treponema succinifaciens DSM 2489] gi|328448719|gb|AEB14435.1| GTP-binding signal recognition particle SRP54 G- domain protein [Treponema succinifaciens DSM 2489] Length = 447 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 24/197 (12%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS----------DAGLKVMLAAGDTFRSAAIDQLKI 160 P VI++VG GVGKTT + K+S ++S ++ + DT R AAI+QLK Sbjct: 225 PKVIIIVGPTGVGKTTTVAKMSSRISIDYKKNREKYKYPPRIRMITTDTMRVAAIEQLKR 284 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 WA+ + + +E D L + D + IDT+G N+ I KM Sbjct: 285 WAEIINVNVDKAESSEDLKILC-----DSYVSNSDYIFIDTSGYSPND---YENIAKMRT 336 Query: 221 VL--KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +L K L+ + ++ + A +N +R E F + +I+TK D T G +I + Sbjct: 337 ILNVKNLNENVYLAITAGVSAKDLENIIRNYEGFDFKS----IIVTKCDETTSFGRVISV 392 Query: 279 VVTHKIPVYFLGVGEGI 295 + PV ++ G+ + Sbjct: 393 LSEKNKPVSWITTGQDV 409 >gi|288573008|ref|ZP_06391365.1| GTP-binding signal recognition particle SRP54 G- domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568749|gb|EFC90306.1| GTP-binding signal recognition particle SRP54 G- domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 447 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 17/189 (8%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 ++ +G GVGKTT I KL+ S KV+LA DT+R AA++QL+ +A V Sbjct: 255 VMFIGPTGVGKTTTIAKLAAANSLWEDRKVLLATADTYRIAAVEQLRTYAKILG---VPV 311 Query: 173 EIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 E+ D L K + K+ V+++++DTAGR +S + ++ AP Sbjct: 312 EVIFDPQDL-----KGIREKRDVELILLDTAGRSQRDSRRLDEAKELYEAF------APE 360 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 SV V+ A++ + V + LI TK+D T G ++ I + IP+ FL V Sbjct: 361 SVHLVISASSKYRDMLDVIERMGNMPISHLIFTKLDETLTLGPVLEIALNFDIPISFLTV 420 Query: 292 GEGI-NDLE 299 G+ + ND+E Sbjct: 421 GQNVPNDIE 429 >gi|121533741|ref|ZP_01665568.1| GTP-binding signal recognition particle SRP54, G- domain [Thermosinus carboxydivorans Nor1] gi|121307732|gb|EAX48647.1| GTP-binding signal recognition particle SRP54, G- domain [Thermosinus carboxydivorans Nor1] Length = 363 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 119/254 (46%), Gaps = 23/254 (9%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRY---AKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 L LL+++D+ +A+ +V+ L A V+++L+D + + ++ P N Sbjct: 111 LYQLLVKNDVEPDIARNLVQGLPDDNSIIGASQPIVRQLLFDRLCNYFQKIEGITIPQNG 170 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADR 164 V+ ++G GVGKTT I KL+ + G KV L DT+R AA++QLK +AD Sbjct: 171 T-----KVVALIGPTGVGKTTTIAKLAANFALRDGYKVALITADTYRIAAVEQLKTYADI 225 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + A Y + + +++IDTAGR NN +A + ++ V Sbjct: 226 IGIPIEIVYTPDEMKAALY------RHRDKHLVLIDTAGRSPNNQYQLAELQALLSVDPY 279 Query: 225 LDPHAPHSVLQVLDATTG-QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 +D H VL TT ++AL V+ F +V + TK+D + G ++ ++ Sbjct: 280 IDTHL------VLSTTTKYKDALELVKKF-SVCSPQKFLFTKIDEASNLGTVLNLLYQFP 332 Query: 284 IPVYFLGVGEGIND 297 + ++ G+ + D Sbjct: 333 TKLSYVTNGQNVPD 346 >gi|78042670|ref|YP_359857.1| flagellar biosynthesis regulator FlhF [Carboxydothermus hydrogenoformans Z-2901] gi|77994785|gb|ABB13684.1| flagellar biosynthesis protein FlhF [Carboxydothermus hydrogenoformans Z-2901] Length = 350 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 112/248 (45%), Gaps = 27/248 (10%) Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS-------ELIHKMLMPLSKPFNWDFSHR 110 + + +A IVE++L + +Q L +V+ E + + L+ L KP+ + Sbjct: 104 LKLELAPDIVEQIL-------LELQDFLEEVAPEETSGVERVKEYLINLIKPYYENIQDF 156 Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169 P L+ G GVGKTT + K++ +++ K + DTFR A++QLKI+ Sbjct: 157 PLKALI-GPTGVGKTTTLAKIAGRLAIHEEKPIRFITLDTFRVGAVEQLKIYGKYLGT-- 213 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 ++ L KQ + + + IDTAGR + + + +K+ Sbjct: 214 -TVKVAGSPMELWRAVQKQNEG---ETIFIDTAGRPSKKQNQIQELAGFLEAVKK----- 264 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 + V+ AT ++ + G I+TK+D T + G LI ++V K P+ +L Sbjct: 265 EKDIYLVISATVKPEDAEKIAKDFSPCGFNKFIVTKIDETDKFGVLINLIVKFKKPIVYL 324 Query: 290 GVGEGIND 297 GVG+ + D Sbjct: 325 GVGQNVPD 332 >gi|269792923|ref|YP_003317827.1| GTP-binding signal recognition particle SRP54 G- domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100558|gb|ACZ19545.1| GTP-binding signal recognition particle SRP54 G- domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 402 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 116/251 (46%), Gaps = 32/251 (12%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL-SKPFNWDFSHRP 111 L+ +D+ VAQ+I+ S +R D+ EL+ + + S P + R Sbjct: 162 LVEADVDPEVAQRIL------------SSRRGGEDLLELLSSRVRVMGSDPVSAMGGRR- 208 Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 ++ VG GVGKTT I KL+ S G KV LA DT+R AA++QL+ +A Sbjct: 209 --VMFVGPTGVGKTTTIAKLAAVHSLWEGRKVALATADTYRIAAVEQLRTYAKILGIPME 266 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL-DPHA 229 D L ++ + D++++DTAGR ++ K + LK L D Sbjct: 267 VVFEAKDFEGLV------SKHQGCDLIMLDTAGRSSRDA-------KKMEELKWLYDAFQ 313 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P +V VL A + +V AV +I TK+D T G L+ ++ +PV F Sbjct: 314 PDAVHLVLAANLKYKDMLKVIDRMAVVPIGSVIFTKLDETYSFGPLLNVLEDFNLPVSFF 373 Query: 290 GVGEGI-NDLE 299 VG+ + ND+E Sbjct: 374 TVGQNVPNDIE 384 >gi|260438785|ref|ZP_05792601.1| flagellar biosynthesis protein FlhF [Butyrivibrio crossotus DSM 2876] gi|292808774|gb|EFF67979.1| flagellar biosynthesis protein FlhF [Butyrivibrio crossotus DSM 2876] Length = 415 Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 62/253 (24%), Positives = 106/253 (41%), Gaps = 30/253 (11%) Query: 62 VAQKIVEELLTKRYA------------KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109 + K++E + ++YA K+ ++ +L + + K+++ L +P + Sbjct: 158 IYNKLMENEMDEKYANAIINDINASLKKESNIDSIL---AAVYQKIILKLGEPDGIETDE 214 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWAD----R 164 R +I +G GVGKTT I KL+ + G V + DT+R AA++QL +A Sbjct: 215 RKKIIFFIGPTGVGKTTTIAKLASDFKLNKGKSVAMVTADTYRIAAVEQLNTYAGILDVP 274 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 S + SEI + DV+ +DTAGR H N + ++I +K Sbjct: 275 VSVAYSPSEICGCLNEFS----------GYDVIFVDTAGRSHKNEEQKDELIELINNVKN 324 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 A VL TT L + + L+ TK+D T G +I + Sbjct: 325 GGYDADIETFLVLSVTTKYKDLINIADTYKEIDDYRLLFTKLDETVTLGNIINLKCYTGA 384 Query: 285 PVYFLGVGEGIND 297 P+ + G+ + D Sbjct: 385 PLSYTTSGQNVPD 397 >gi|187778766|ref|ZP_02995239.1| hypothetical protein CLOSPO_02361 [Clostridium sporogenes ATCC 15579] gi|187772391|gb|EDU36193.1| hypothetical protein CLOSPO_02361 [Clostridium sporogenes ATCC 15579] Length = 408 Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 23/191 (12%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD-- 168 V ++VG GVGKTT I KL+ K+S D KV L DT+R A++QLK +AD + Sbjct: 214 VTVLVGPTGVGKTTTIAKLAGKLSLIDKK-KVGLITIDTYRIGAVEQLKTYADIMNIPFK 272 Query: 169 --FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 F ++ L Y DV+++DT GR N + ++ + I +K Sbjct: 273 VVFSIKDMEKSIIDLDY----------CDVILVDTTGRSSKNMMQISELRAFIEKIK--- 319 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 SV V++A+T + + + + +I+TK+D T+ G ++ I+ K P+ Sbjct: 320 ---EKSVHLVINASTKNKDIETIIKGYTILEYENIIITKLDETSTYGSILTILDKGKKPI 376 Query: 287 YFLGVGEGIND 297 F+ G+ + D Sbjct: 377 SFITTGQDVPD 387 >gi|309359570|emb|CAP32620.2| hypothetical protein CBG_13942 [Caenorhabditis briggsae AF16] Length = 608 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 73/275 (26%), Positives = 122/275 (44%), Gaps = 44/275 (16%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMP--- 98 E++ D LI ++ A+KI + +++K K V + Q V V E + ++L P Sbjct: 341 EKMRDNLIMKNVAAEPAEKICQSVVSKLEGKVVNNFSRTAQEVRTAVRESLVQLLTPKHR 400 Query: 99 ---LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 L RP+VI+ GVNGVGK+T + K++ +++ +V++AAGDTFR+ A+ Sbjct: 401 VDILRDVIEAKKEGRPYVIVFCGVNGVGKSTNLAKITFWLTENKHRVLIAAGDTFRAGAV 460 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 +QL+ +A + + L + + + A I A R Sbjct: 461 EQLRTHTRHLNA------LHPQSVHLYEQGYGKDAAGLAAAAIKIAAER---------DF 505 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF------HAVAGTT-----GLIMT 264 +IRV + P VL V +A G A+ Q+ F HA G G+++T Sbjct: 506 DVLIRV------NEPDLVLFVGEALVGNEAVDQLVKFNEALANHAAPGQKPRLIDGIVLT 559 Query: 265 KMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 K D + G + + P+ F+G G+ DL Sbjct: 560 KFDTIDDKVGAAVSMTYITGQPIVFVGCGQTYADL 594 >gi|221109366|ref|XP_002169179.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 159 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 29/150 (19%) Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSA------------DFVCSE-IGSDAAALAYEAFK 187 +VM+AA DTFRS A++QL+ R A F+ + G DAAA++ EA Sbjct: 11 RVMIAACDTFRSGAVEQLRTHTCRLKALHPKASPSAPEQVFLYDKGYGKDAAAVSMEAIN 70 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+ K DV+++DTAGR+ +N LM + K+I++ + P+ VL V +A G + + Sbjct: 71 LAKDLKCDVVLVDTAGRMQDNEPLMRSLAKLIKI------NEPNLVLFVGEALVGNDGVD 124 Query: 248 QVEMFH-AVAGTT---------GLIMTKMD 267 Q+ F+ A+A + G+++TK D Sbjct: 125 QLRKFNQALADHSDVNNPHLIDGIVLTKFD 154 >gi|312879608|ref|ZP_07739408.1| flagellar biosynthetic protein FlhF [Aminomonas paucivorans DSM 12260] gi|310782899|gb|EFQ23297.1| flagellar biosynthetic protein FlhF [Aminomonas paucivorans DSM 12260] Length = 428 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 119/249 (47%), Gaps = 26/249 (10%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112 L+RS++ VA +++EE + ++++ + L ++ + + P+N R Sbjct: 184 LLRSEVDPEVASRLLEEF-HREPGENLA--------AWLAGRIPVLAADPWNALGGKR-- 232 Query: 113 VILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 I+ VG GVGKTT I K++ S G KV+L DT+R AA++QL+ +A + Sbjct: 233 -IMFVGPTGVGKTTSIAKIAAIHSLWEGRKVVLVTADTYRIAAVEQLRTYAKILG---IP 288 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 E+ D L K + D++++DTAGR H ++ M + + + P Sbjct: 289 LEVAFDPQELEGILTKH---RNADLVLLDTAGRSHKDAKRMDELKGLHEIF------CPD 339 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 +V VL + + V V ++ TKMD T+ G L+ +V +P+ F V Sbjct: 340 AVHLVLASNLKYRDMLDVIDRMGVVPLKSILFTKMDETSTFGPLLNVVEDFDLPLSFFTV 399 Query: 292 GEGI-NDLE 299 G+ + ND+E Sbjct: 400 GQNVPNDIE 408 >gi|325107976|ref|YP_004269044.1| flagellar biosynthetic protein FlhF [Planctomyces brasiliensis DSM 5305] gi|324968244|gb|ADY59022.1| flagellar biosynthetic protein FlhF [Planctomyces brasiliensis DSM 5305] Length = 437 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 95/196 (48%), Gaps = 26/196 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF- 169 ++ +VG GVGKTT I KL+ ++ D L++ L DT+R AA++QL+ +A+ Sbjct: 242 IVALVGPTGVGKTTTIAKLASNFRLRD-NLRLGLITVDTYRIAAVEQLRTYAEIIDLPMK 300 Query: 170 ---VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 E+ A LA +D+++IDTAGR + + I ++ L R+ Sbjct: 301 VVTTPDEMPQAVAELA----------DMDLILIDTAGRSPQDEL---RIQELKTFLDRIP 347 Query: 227 PHAPHSVLQVLDATTGQNALR-QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 H VL ATT Q LR VE F+ + ++TK+D G ++ + +P Sbjct: 348 VDETHLVL---SATTSQRNLRLTVETFNVIQPQAA-VLTKLDEAPERGAIVTLSAQLGLP 403 Query: 286 VYFLGVGEGI-NDLEP 300 V + G+ + D+EP Sbjct: 404 VSYFTTGQNVPQDIEP 419 >gi|291278830|ref|YP_003495665.1| flagellar biosynthesis protein FlhF [Deferribacter desulfuricans SSM1] gi|290753532|dbj|BAI79909.1| flagellar biosynthesis protein FlhF [Deferribacter desulfuricans SSM1] Length = 386 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 115/241 (47%), Gaps = 21/241 (8%) Query: 67 VEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK---PFNWDF--SHRPHVILVVGVN 120 V++L+ ++ K V +RV D + ++K+L+ L P D+ S + V+ ++G Sbjct: 138 VDDLIAYKFLKKVE-KRVSTDFNRAQLNKLLVQLLSELIPIEKDYFSSLKQKVVAMIGPT 196 Query: 121 GVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 GVGKTT I K++ +S KV L DTFR A++QL+ +AD + ++ S+ Sbjct: 197 GVGKTTTIAKIAATLSLKLQKKVALITIDTFRIGAVEQLRTYADIVD---IPLKVASNPE 253 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 L + A+ D + +D+ GR + + + K + V + P + VL Sbjct: 254 ELKSQI---AELSGFDYIFLDSMGRSQFDDSQIRELAKYMEVSPVITP------VLVLSM 304 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDL 298 ++ L + + LI TK+D T R G L+ + V KIP+ L G+ + D+ Sbjct: 305 SSNHAELYDTFDRYRLLKPEYLIFTKLDETRRFGPLLNLPVLKKIPLLLLSTGQNVPEDI 364 Query: 299 E 299 E Sbjct: 365 E 365 >gi|153953793|ref|YP_001394558.1| flagellar biosynthesis regulator FlhF [Clostridium kluyveri DSM 555] gi|219854409|ref|YP_002471531.1| hypothetical protein CKR_1066 [Clostridium kluyveri NBRC 12016] gi|146346674|gb|EDK33210.1| FlhF [Clostridium kluyveri DSM 555] gi|219568133|dbj|BAH06117.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 397 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 15/192 (7%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADR 164 D HV+++VG GVGKTT I KL+ K+ KV L DT+R A++QL+ +AD Sbjct: 196 DNKELEHVVVLVGPTGVGKTTTIAKLAGKLVLIEKKKVGLITIDTYRIGAVEQLRTYADI 255 Query: 165 TSADF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + F V + A A+ K D+++IDT GR N + ++ + I Sbjct: 256 MNIPFQVIFSMKDMAKAI-------DNMKSCDIILIDTTGRSSKNEMQISELRAFI---- 304 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 D +V V+ TT + + + + +I+TK+D T+ G ++ I+ K Sbjct: 305 --DKVQTSNVHLVISCTTKNKDIDVIVNGYKKLNYSDIIITKLDETSTYGSILNILQLAK 362 Query: 284 IPVYFLGVGEGI 295 P+ F+ G+ + Sbjct: 363 KPISFVTTGQNV 374 >gi|237666591|ref|ZP_04526576.1| flagellar biosynthetic protein FlhF [Clostridium butyricum E4 str. BoNT E BL5262] gi|237657790|gb|EEP55345.1| flagellar biosynthesis protein FlhF [Clostridium butyricum E4 str. BoNT E BL5262] Length = 434 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 106/222 (47%), Gaps = 23/222 (10%) Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136 +DVS +L D+ E + ++ +K N ++++G GVGKTT I KL+ +++ Sbjct: 214 EDVSETEILRDIFE---RDILVTNKGLNGK-------VVLIGPTGVGKTTTIAKLAGRLA 263 Query: 137 -DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 KV L DT+R AI+QLK +A+ + F I A E+ + D Sbjct: 264 LVEKKKVGLITIDTYRIGAIEQLKTYAEIMNIPFKVV-ITIKEMENAIESMEDC-----D 317 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 V++IDT GR N++ ++ + ++ P V V+ ATT ++ + ++ Sbjct: 318 VVLIDTTGRSSKNTMQISELRAFVQ------KANPDHVNMVISATTKNKDIKGILKGYSE 371 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 G +I+TK+D T G + I P+ F+ +G+ + D Sbjct: 372 LGYESVIVTKLDETTAYGSIYNISRNSNKPISFITIGQNVPD 413 >gi|71913237|gb|AAZ53359.1| signal recognition particle-docking protein [Flavobacterium psychrophilum] Length = 74 Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 34/68 (50%), Positives = 45/68 (66%) Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 +TGQNA Q + F A T L +TK+DGTA+GG +I I +IPV ++GVGEGINDL Sbjct: 1 GSTGQNAFEQAKQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGINDL 60 Query: 299 EPFVAKDF 306 + F +F Sbjct: 61 QVFNKYEF 68 >gi|125973007|ref|YP_001036917.1| GTP-binding signal recognition particle [Clostridium thermocellum ATCC 27405] gi|256004804|ref|ZP_05429779.1| GTP-binding signal recognition particle SRP54 G- domain [Clostridium thermocellum DSM 2360] gi|281417218|ref|ZP_06248238.1| flagellar biosynthetic protein FlhF [Clostridium thermocellum JW20] gi|125713232|gb|ABN51724.1| GTP-binding signal recognition particle SRP54, G-domain [Clostridium thermocellum ATCC 27405] gi|255991254|gb|EEU01361.1| GTP-binding signal recognition particle SRP54 G- domain [Clostridium thermocellum DSM 2360] gi|281408620|gb|EFB38878.1| flagellar biosynthetic protein FlhF [Clostridium thermocellum JW20] gi|316940757|gb|ADU74791.1| flagellar biosynthetic protein FlhF [Clostridium thermocellum DSM 1313] Length = 403 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 67/257 (26%), Positives = 119/257 (46%), Gaps = 29/257 (11%) Query: 51 DLLIRSDIGVAVAQKIVEELLT---KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107 DL + + V +IV++L++ + ++VSV + LI +M+ KP + Sbjct: 147 DLFYNNLLKNEVDTEIVKQLISVVRGKVKENVSVSETASILYNLISEMM---GKPSDIKL 203 Query: 108 SH--RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWAD- 163 + +P V+++VG GVGKTT + K++ S + V L DT+R AA++QLK +AD Sbjct: 204 RNDGKPTVVMLVGPTGVGKTTTLAKIAANYSLNLNKNVGLITADTYRIAAVEQLKTYADI 263 Query: 164 ---RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 + +EI +A K+ K D+++IDTAGR + N + ++ Sbjct: 264 LGMPLKVIYSANEIQ--------DAIKEYSDK--DLILIDTAGRSYKNKEHFDELKTLVE 313 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 V + VL TTG R++ ++ LI TK+D ++ G ++ Sbjct: 314 VTN------ADEIYLVLSTTTGMRNCREIIEHYSFLENYKLIFTKLDESSALGLILNSRR 367 Query: 281 THKIPVYFLGVGEGIND 297 + F+ G+ + D Sbjct: 368 LTNRDLSFVTTGQSVPD 384 >gi|182418485|ref|ZP_02949779.1| flagellar biosynthesis protein FlhF [Clostridium butyricum 5521] gi|182377867|gb|EDT75411.1| flagellar biosynthesis protein FlhF [Clostridium butyricum 5521] Length = 448 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 106/222 (47%), Gaps = 23/222 (10%) Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136 +DVS +L D+ E + ++ +K N ++++G GVGKTT I KL+ +++ Sbjct: 228 EDVSETEILRDIFE---RDILVTNKGLNGK-------VVLIGPTGVGKTTTIAKLAGRLA 277 Query: 137 -DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 KV L DT+R AI+QLK +A+ + F I A E+ + D Sbjct: 278 LVEKKKVGLITIDTYRIGAIEQLKTYAEIMNIPFKVV-ITIKEMENAIESMEDC-----D 331 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 V++IDT GR N++ ++ + ++ P V V+ ATT ++ + ++ Sbjct: 332 VVLIDTTGRSSKNTMQISELRAFVQ------KANPDHVNMVISATTKNKDIKGILKGYSE 385 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 G +I+TK+D T G + I P+ F+ +G+ + D Sbjct: 386 LGYESVIVTKLDETTAYGSIYNISRNSNKPISFITIGQNVPD 427 >gi|89098623|ref|ZP_01171505.1| flagellar biosynthesis regulator FlhF [Bacillus sp. NRRL B-14911] gi|89086585|gb|EAR65704.1| flagellar biosynthesis regulator FlhF [Bacillus sp. NRRL B-14911] Length = 381 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 72/275 (26%), Positives = 121/275 (44%), Gaps = 22/275 (8%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 +++++ L ++ ++ ++++E+LL K Y D+ ++ + ++L + + Sbjct: 123 KKVQEELAGQEVEPSIIEELMEKLLVKWYKSDLEPD--FNKINSWLRELLTAKLETAQYG 180 Query: 107 ---FSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 F H+ +I VG GVGKTT + K++ + + K DT+R AAIDQLK +A Sbjct: 181 GIAFDHK--IINFVGPTGVGKTTTLAKIAAECVIKQKKKTAFITTDTYRIAAIDQLKTYA 238 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 D D A A + FK +V++IDTAGR N K ++ L Sbjct: 239 DILDVPMEVCYTEEDFKA-AVDTFKD-----FEVILIDTAGRNFRNP-------KYVQEL 285 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 K L VL T+ Q + + +V I TK D T+ G L+ I+ Sbjct: 286 KSLLEAESSQTYLVLSLTSKQRDMEETIKQFSVVDINRFIFTKADETSTFGPLLNIIDKT 345 Query: 283 KIPVYFLGVGEGI-NDLEPFVAKDFSAVITGCLDY 316 +L G+ + +DL P K + I G Y Sbjct: 346 GKGAAYLTTGQNVPDDLVPAGPKTIAGAIMGESKY 380 >gi|325288794|ref|YP_004264975.1| flagellar biosynthetic protein FlhF [Syntrophobotulus glycolicus DSM 8271] gi|324964195|gb|ADY54974.1| flagellar biosynthetic protein FlhF [Syntrophobotulus glycolicus DSM 8271] Length = 396 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 17/203 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 V+ ++G GVGKTT IGKL+ S KV L DT+R AA++QL+ + + V Sbjct: 206 VVALIGPTGVGKTTTIGKLAAGFSIIDRRKVALVTADTYRVAAVEQLRTFGEIIG---VP 262 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 EI L EA K+ K +++ IDTAGR ++ M+ + K L+ +P Sbjct: 263 VEIAMTPDDLQ-EAIKRHSDK--ELVFIDTAGRSPHHEAHMSELQKF------LEKASPD 313 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAG-TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 + V+ TT NA Q ++ +T LI+TK+D + G ++ +V +P+ +L Sbjct: 314 LTMLVMSVTT--NADDQAKVLEKFKKYSTHLILTKLDESTHLGSILDLVTKTPLPIAYLT 371 Query: 291 VGEGI-NDLEPFVAKDFSAVITG 312 G+ + +D+E + + I G Sbjct: 372 NGQNVPDDIEAATPEKLAQSILG 394 >gi|212639546|ref|YP_002316066.1| flagellar biosynthesis regulator FlhF [Anoxybacillus flavithermus WK1] gi|212561026|gb|ACJ34081.1| Flagellar GTP-binding protein FlhF [Anoxybacillus flavithermus WK1] Length = 368 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 117/254 (46%), Gaps = 30/254 (11%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHK-MLMPLSKPFNWDFSHR 110 LI +I V ++ LL + Y S + YD V + +H+ ++ LS S + Sbjct: 116 LIDQEISDDVRAMLMSTLLQRWYT---SEKNATYDEVKQWLHEEIVRALSSLSFGGISFQ 172 Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK----VMLAAGDTFRSAAIDQLKIWADRTS 166 I VVG GVGKTT + K++ +D +K V DT+R AAIDQLK +A + Sbjct: 173 KKFINVVGPTGVGKTTTLAKMA---ADCVIKHRKKVAFITTDTYRIAAIDQLKTYAKILN 229 Query: 167 ADF-VCSEIGSDAAALAYEAFKQAQAK--KVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 VC + + F++A+ K D++ IDTAGR N+ + + +MI Sbjct: 230 VPLEVCYNL---------DDFRKAKEKLASYDIVFIDTAGRNFRNAQYVNDLKEMI---- 276 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 D + VL T ++ + ++ I TK+D T+R G ++ +++ + Sbjct: 277 --DFNEEMETFLVLSLTAKWRDMKDIYTQFSLIPIHKFIFTKVDETSRHGAMLNMMIQCR 334 Query: 284 IPVYFLGVGEGIND 297 I ++ G+ + D Sbjct: 335 IGAAYMTHGQNVPD 348 >gi|218288315|ref|ZP_03492614.1| GTP-binding signal recognition particle SRP54 G- domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218241674|gb|EED08847.1| GTP-binding signal recognition particle SRP54 G- domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 381 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 13/187 (6%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V+ VG GVGKTT I K++ AG + V L DTFR AA++QLK +AD + Sbjct: 186 RVVAFVGPTGVGKTTTIAKIAALHVLAGQRRVGLLTTDTFRIAAVEQLKTYADILNVPIA 245 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 ++ DA++ A + D++++DTAGR N + A I + R+L ++ A Sbjct: 246 IADQPEDASS------ALASLQSCDLVLVDTAGR---NFLNPASIEQTKRMLTPIE--AD 294 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 +L V AT +AL+ M ++ I TK+D T G + +V ++P+ ++ Sbjct: 295 EVLLVVSLATKPTDALKVANMAKPLS-VDKFIFTKLDETESVGMIPSLVALCQLPIAYVT 353 Query: 291 VGEGIND 297 G+ + D Sbjct: 354 TGQNVPD 360 >gi|150019064|ref|YP_001311318.1| flagellar biosynthesis regulator FlhF [Clostridium beijerinckii NCIMB 8052] gi|149905529|gb|ABR36362.1| GTP-binding signal recognition particle SRP54, G- domain [Clostridium beijerinckii NCIMB 8052] Length = 446 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 17/187 (9%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +++VG GVGKTT I KL+ +++ KV L DT+R AI+QLK +A+ + F Sbjct: 253 VVLVGPTGVGKTTTIAKLAGRLALIEKKKVGLITVDTYRIGAIEQLKTYAEIMNIPF--- 309 Query: 173 EIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + + + A + DV++IDT GR N++ ++ + ++ P Sbjct: 310 -----KVVITMKEMEDAIEEMNNCDVVLIDTTGRSSKNAMQISELRAFVQ------KANP 358 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 V V+ ATT + ++ + ++ +I+TK+D T G L I PV F+ Sbjct: 359 DHVNMVISATTKNSDIKSILSGYSELEYDNIIITKLDETTVYGSLYNIAKIANKPVSFIT 418 Query: 291 VGEGIND 297 +G+ + D Sbjct: 419 IGQNVPD 425 >gi|170754532|ref|YP_001782261.1| flagellar biosynthesis regulator FlhF [Clostridium botulinum B1 str. Okra] gi|169119744|gb|ACA43580.1| flagellar biosynthesis protein FlhF [Clostridium botulinum B1 str. Okra] Length = 408 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 95/190 (50%), Gaps = 19/190 (10%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V ++VG GVGKTT I KL+ K+S D KV L DT+R A++QLK +AD + F Sbjct: 213 KVTVLVGPTGVGKTTTIAKLAGKLSLIDKK-KVGLITIDTYRIGAVEQLKTYADIMNIPF 271 Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V S + A + + DV+++DT GR N + ++ + I +K Sbjct: 272 KVVFSMRDMEKAIIDLDY--------CDVILVDTTGRSSKNMMQISELRAFIEKIK---- 319 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 SV V+ A+T + + +++ +I+TK+D T+ G ++ I+ K P+ Sbjct: 320 --EKSVHLVISASTKNKDIETIVKGYSILEYENIIITKLDETSIYGSILTILDKGKKPIS 377 Query: 288 FLGVGEGIND 297 F+ G+ + D Sbjct: 378 FITTGQDVPD 387 >gi|289759036|ref|ZP_06518414.1| signal recognition particle protein ffh [Mycobacterium tuberculosis T85] gi|289714600|gb|EFD78612.1| signal recognition particle protein ffh [Mycobacterium tuberculosis T85] Length = 349 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/124 (37%), Positives = 63/124 (50%), Gaps = 6/124 (4%) Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K DV+I+DTAGRL + LMA IR D P VL VLDA GQ+A+ Sbjct: 12 KHFDVVIVDTAGRLGIDEELMA-QAAAIR-----DAINPDEVLFVLDAMIGQDAVTTAAA 65 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F G TG+ +TK+DG ARGG + + +P+ F GE + D + F ++ I Sbjct: 66 FGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRIL 125 Query: 312 GCLD 315 G D Sbjct: 126 GMGD 129 >gi|215447178|ref|ZP_03433930.1| signal recognition particle protein ffh [Mycobacterium tuberculosis T85] Length = 350 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/124 (37%), Positives = 63/124 (50%), Gaps = 6/124 (4%) Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 K DV+I+DTAGRL + LMA IR D P VL VLDA GQ+A+ Sbjct: 13 KHFDVVIVDTAGRLGIDEELMA-QAAAIR-----DAINPDEVLFVLDAMIGQDAVTTAAA 66 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F G TG+ +TK+DG ARGG + + +P+ F GE + D + F ++ I Sbjct: 67 FGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRIL 126 Query: 312 GCLD 315 G D Sbjct: 127 GMGD 130 >gi|319790428|ref|YP_004152061.1| GTP-binding signal recognition particle SRP54 G- domain protein [Thermovibrio ammonificans HB-1] gi|317114930|gb|ADU97420.1| GTP-binding signal recognition particle SRP54 G- domain protein [Thermovibrio ammonificans HB-1] Length = 383 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 19/206 (9%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 S P +I +G GVGKTT + K++ K + LKV + DTF+ A+ Q +++A + Sbjct: 186 SGEPKLIAFLGPTGVGKTTNLFKVASKFVIEQDLKVGVITTDTFKVGAVQQARVYASILN 245 Query: 167 ADFVCSEIGSDAAALAYEAFKQ--AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 F + +D + FK+ A + +DV++IDT GR H + +G++ +L Sbjct: 246 VPFF---VATDQ-----KKFKEILASVENLDVVLIDTVGRSHYD---YWRLGEIKAILSG 294 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 +++L + T + AL V+ + + L TK+D ++R G ++ + ++ Sbjct: 295 ASLPIEYTLLISCNYDT-KEALEVVKRYRGFFPVSSLFFTKVDESSRPGVMVNVPYYTEL 353 Query: 285 PVYFLGVG----EGINDLEPFVAKDF 306 P+ +L G E I L P V D+ Sbjct: 354 PLAYLSTGQRVPEDIKLLTPEVVTDY 379 >gi|157363485|ref|YP_001470252.1| flagellar biosynthesis regulator FlhF [Thermotoga lettingae TMO] gi|157314089|gb|ABV33188.1| GTP-binding signal recognition particle SRP54 G- domain [Thermotoga lettingae TMO] Length = 367 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 15/184 (8%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +L VG GVGKTT + K++ K+ K V + DT+R AA +QLK +A Sbjct: 170 VLFVGPTGVGKTTTLAKIAAKLKLIHKKQVAILTLDTYRIAATEQLKTYA-------AIM 222 Query: 173 EIGSDAAALAYEAFKQAQA-KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 +I A EA + A DV++IDTAGR NN I M+ + ++ + P Sbjct: 223 DIPMRVAYTPKEAKLELDAMHDFDVILIDTAGRSQNNDIQMSELRALVETI------TPS 276 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 V+ + L+ + VA T I+TKMD T G +I I IP+ ++ Sbjct: 277 VCFLVVGMNCKYSDLKDIVKKFDVAKYTHTILTKMDETRSYGHIINISQLSGIPLAYITN 336 Query: 292 GEGI 295 G+ + Sbjct: 337 GQRV 340 >gi|77918765|ref|YP_356580.1| flagellar GTP-binding protein [Pelobacter carbinolicus DSM 2380] gi|77544848|gb|ABA88410.1| flagellar GTP-binding protein [Pelobacter carbinolicus DSM 2380] Length = 419 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 107/210 (50%), Gaps = 21/210 (10%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 R I +VG GVGKTT I K++ K++ + +V L DT+R AA++QLK++ + + Sbjct: 219 PRRQKRIALVGPTGVGKTTTIAKMAAKQLLNGTGRVALVTIDTYRIAAVEQLKVYGEIMN 278 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + E+ + L ++A + Q K ++++IDTAGR + + +A + + Sbjct: 279 ---LPVEVVTTPEQL-HQALARHQDK--ELILIDTAGRSPRDDMSIAELAAFLG------ 326 Query: 227 PHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 A L VL ATT L + V+ F + L+ TK+D + G L+ I +T ++P Sbjct: 327 -KAETENLLVLSATTRDRELTEAVQRFSRIP-LHSLVFTKLDECEQCGTLLNISLTQQLP 384 Query: 286 VYFLGVGEGINDLEPFVAKDFSAV---ITG 312 + FL G+ + E V D A+ ITG Sbjct: 385 LSFLTNGQRVP--EDLVEADTEAITGFITG 412 >gi|260893859|ref|YP_003239956.1| flagellar biosynthetic protein FlhF [Ammonifex degensii KC4] gi|260866000|gb|ACX53106.1| flagellar biosynthetic protein FlhF [Ammonifex degensii KC4] Length = 350 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 93/188 (49%), Gaps = 14/188 (7%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V +VG GVGKTT + KL+ ++S +V+L DT+R A++QL+ +A+ F Sbjct: 147 RVFALVGPTGVGKTTTLAKLAARLSLYQHRRVVLVTIDTYRIGAVEQLRTYAEVMGVPFG 206 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + ++ A+ E + +A D ++DT GR +A + + + VL +P Sbjct: 207 VAMTPAELRAI-LERYPEA-----DHFLVDTVGRPGRRWEEIAELQEFLAVLP-----SP 255 Query: 231 HSVLQVLDATTG-QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 V VL T ++ +R E F + G LI TK+D T G ++ +V K+P ++ Sbjct: 256 RDVGLVLSLNTRYRDLVRTAEAFREL-GPNLLIFTKLDETDSWGPMLNLVYRLKLPALYV 314 Query: 290 GVGEGIND 297 G+ + D Sbjct: 315 TTGQSVPD 322 >gi|291519575|emb|CBK74796.1| Flagellar GTP-binding protein [Butyrivibrio fibrisolvens 16/4] Length = 283 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 91/207 (43%), Gaps = 7/207 (3%) Query: 93 HKMLMPLSKPFNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTF 150 KM++ L P RP V+ +G GVGKTT I K++ K + G KV L DTF Sbjct: 64 QKMVLKLGTPTKIVPGEKRPKVVFFIGPTGVGKTTTIAKIASKFKVEEGKKVGLITADTF 123 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AA +QL+ +A+ + I S L + + + +DV+++DT G H N Sbjct: 124 RMAAANQLQTYANILGVPL--NVIYSADELLDTVKRQNREYQDLDVILVDTIGFSHKNQD 181 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 K+I L + V VL ATT Q L + + LI TK+D T Sbjct: 182 QKNDTKKLITALGDI---YDSEVYLVLSATTKQKDLMDIADAYMEFTKFNLIFTKLDETK 238 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGIND 297 G L + + ++ G+ + D Sbjct: 239 CLGNLFNMKQYTGSSLSYITTGQNVPD 265 >gi|221133142|ref|XP_002171139.1| PREDICTED: similar to F21D5.7, partial [Hydra magnipapillata] Length = 259 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 6/120 (5%) Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 V+I+DTAGRL + ++M + ++ + + P +L V+D+ TGQ+A+ + F+ Sbjct: 5 VVIVDTAGRLAVDEVMMKEVEEIKKAI------TPSEILFVVDSMTGQDAVNTAKTFNER 58 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G+++TK+DG +RGG + I P+ F+ GE ++ L+ F ++ I G D Sbjct: 59 LDFDGVVLTKLDGDSRGGAALSIKAVVNKPIKFISTGEKMDALDIFYPDRMASRILGMGD 118 >gi|242309560|ref|ZP_04808715.1| flagellar biosynthesis regulator FlhF [Helicobacter pullorum MIT 98-5489] gi|239524131|gb|EEQ63997.1| flagellar biosynthesis regulator FlhF [Helicobacter pullorum MIT 98-5489] Length = 404 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 22/195 (11%) Query: 112 HVILVVGVNGVGKTTVIGKLS---KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT--S 166 +++++VG GVGKTT + KL+ +M + KV + DT+R A+DQL +A + S Sbjct: 205 NIMMLVGPTGVGKTTTLAKLAARYSRMLNKNYKVGIITLDTYRIGAVDQLMFYAKKMKLS 264 Query: 167 ADFVCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 D V E F A K D ++IDT G ++ + + + Sbjct: 265 IDTVVDT----------EEFINALDSLKYCDYILIDTVGSSQHDRAKLESLKNFVNA--- 311 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 DP+ V V+ ATT L+ + + G LI TK+D T G + ++ K Sbjct: 312 -DPNTKIDVSLVMSATTKYEDLKDIYHTFSTLGIDTLIFTKLDETHSYGNIFSLIYETKK 370 Query: 285 PVYFLGVGEGI-NDL 298 + +G+ + NDL Sbjct: 371 ATSYFSIGQEVPNDL 385 >gi|331269332|ref|YP_004395824.1| flagellar biosynthesis protein flhF [Clostridium botulinum BKT015925] gi|329125882|gb|AEB75827.1| flagellar biosynthesis protein flhF [Clostridium botulinum BKT015925] Length = 381 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 18/204 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF- 169 ++++VG GVGKTT I KL+ K++ D KV L DT+R AI+QL +A+ S F Sbjct: 187 IVVLVGPTGVGKTTTIAKLAGKLALIDKK-KVGLITVDTYRIGAIEQLSTYANIMSIPFE 245 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 I AAL + K DV+++DT GR N + +A + ++ Sbjct: 246 SVFSIKEMEAAL-------DRMKDCDVILVDTTGRSSKNIMQIAELNAFVQ------KTN 292 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 ++ V+ ATT + + + +I+TK+D T G ++ I+ P+ F+ Sbjct: 293 TENIYLVISATTKDKDVESIVEGYKTLNYANVIITKLDETTTYGSILNILSNANKPLSFV 352 Query: 290 GVGEGI-NDLEPFVAKDFSAVITG 312 G+ + +D + +++ + ++ G Sbjct: 353 TTGQNVPDDFKKITSEEIARLVLG 376 >gi|322806974|emb|CBZ04544.1| flagellar biosynthesis protein FlhF [Clostridium botulinum H04402 065] Length = 408 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 17/189 (8%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V ++VG GVGKTT I KL+ K+S D KV L DT+R A++QLK +AD + F Sbjct: 213 KVTVLVGPTGVGKTTTIAKLAGKLSLIDKK-KVGLITIDTYRIGAVEQLKTYADIMNIPF 271 Query: 170 -VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V I A+ + DV+++DT GR N + ++ + I +K Sbjct: 272 KVVFSIKDMEKAIIDLDY-------CDVILVDTTGRSSKNMMQISELRAFIEKIK----- 319 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 SV V+ A+T + + +++ +I+TK+D T+ G ++ I+ K P+ F Sbjct: 320 -EKSVHLVISASTKNKDIETIVKGYSILEYENIIITKLDETSIYGSILTILDKGKNPISF 378 Query: 289 LGVGEGIND 297 + G+ + D Sbjct: 379 ITTGQDVPD 387 >gi|170759882|ref|YP_001787965.1| flagellar biosynthesis regulator FlhF [Clostridium botulinum A3 str. Loch Maree] gi|169406871|gb|ACA55282.1| flagellar biosynthesis protein FlhF [Clostridium botulinum A3 str. Loch Maree] Length = 408 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 17/189 (8%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V ++VG GVGKTT I KL+ K+S D KV L DT+R A++QLK +AD + F Sbjct: 213 KVTVLVGPTGVGKTTTIAKLAGKLSLIDKK-KVGLITIDTYRIGAVEQLKTYADIMNIPF 271 Query: 170 -VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V I A+ + DV+++DT GR N + ++ + I +K Sbjct: 272 KVVFSIKDMEKAIVDLDY-------CDVILVDTTGRSSKNMMQISELRAFIEKIK----- 319 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 SV V+ A+T + + +++ +I+TK+D T+ G ++ I+ K P+ F Sbjct: 320 -EKSVHLVISASTKNKDIETIIKGYSILEYENIIITKLDETSIYGSVLTILDKGKKPISF 378 Query: 289 LGVGEGIND 297 + G+ + D Sbjct: 379 ITTGQDVPD 387 >gi|218513807|ref|ZP_03510647.1| cell division protein [Rhizobium etli 8C-3] Length = 269 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 54/82 (65%), Gaps = 1/82 (1%) Query: 4 QKVASES-LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62 Q +A + LSW ++L G A TS +L IT + + R+LDD ++LEDLLI++D+GV Sbjct: 135 QPIAPQPKLSWFQRLRNGLARTSSQLTGQITALFTKRKLDDETLQDLEDLLIQADLGVET 194 Query: 63 AQKIVEELLTKRYAKDVSVQRV 84 A ++ + L ++RY KDV+ + V Sbjct: 195 ALRVTDTLASERYGKDVTGEDV 216 >gi|153939997|ref|YP_001391945.1| flagellar biosynthesis regulator FlhF [Clostridium botulinum F str. Langeland] gi|152935893|gb|ABS41391.1| flagellar biosynthesis protein FlhF [Clostridium botulinum F str. Langeland] Length = 408 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 17/188 (9%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF- 169 V ++VG GVGKTT I KL+ K+S D KV L DT+R A++QLK +AD + F Sbjct: 214 VTVLVGPTGVGKTTTIAKLAGKLSLIDKK-KVGLITIDTYRIGAVEQLKTYADIMNIPFK 272 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V I A+ + DV+++DT GR N + ++ + I +K Sbjct: 273 VVFSIKDMEKAIIDLDY-------CDVILVDTTGRSSKNMMQISELRAFIEKIK------ 319 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 SV V+ A+T + + +++ +I+TK+D T+ G ++ I+ K P+ F+ Sbjct: 320 EKSVHLVISASTKNKDIETIIKGYSILEYENIIITKLDETSIYGSILTILDKGKKPISFI 379 Query: 290 GVGEGIND 297 G+ + D Sbjct: 380 TTGQDVPD 387 >gi|291277486|ref|YP_003517258.1| flagellar biosynthesis protein [Helicobacter mustelae 12198] gi|290964680|emb|CBG40535.1| flagellar biosynthesis protein [Helicobacter mustelae 12198] Length = 447 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 111/223 (49%), Gaps = 27/223 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-- 136 V+++R E++ KML ++ N D S + +I+++G GVGKTT + KL+ + S Sbjct: 218 VTIKRYF---REILRKMLYCRNE--NLDMSSK-KIIMLIGPTGVGKTTTLAKLAARYSRL 271 Query: 137 -DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA-KKV 194 D +V + DT+R A+DQL +A + +I + + ++ A + Sbjct: 272 LDHKYRVGIITLDTYRIGALDQLTWYARKM-------KISIETVIEPEDFLREIDALRYC 324 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 DV+++DTAG ++ + + + ++ ++D V VL ATT L+ +++HA Sbjct: 325 DVILVDTAGHSQHDKQKIQQLRRFVQNDYKID------VSLVLSATTKFGDLK--DIYHA 376 Query: 255 VA--GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 + G + +K+D + G L + K P+ +L +G+ + Sbjct: 377 FSDLGVDSFVFSKLDESRGLGNLFSLAYETKKPISYLSIGQEV 419 >gi|15895415|ref|NP_348764.1| flagellar biosynthesis regulator FlhF [Clostridium acetobutylicum ATCC 824] gi|15025138|gb|AAK80104.1|AE007715_9 Flagellar GTP-binding protein, FlhF [Clostridium acetobutylicum ATCC 824] gi|325509561|gb|ADZ21197.1| flagellar biosynthesis regulator FlhF [Clostridium acetobutylicum EA 2018] Length = 389 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/267 (25%), Positives = 116/267 (43%), Gaps = 33/267 (12%) Query: 36 ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95 ISS D + E+E L +DI ++IV+ ++ + D+++ K+ Sbjct: 130 ISSSNADQEEKSEIELKLEEADINEGYIKEIVKNIMDDKSDIDLNL------------KL 177 Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAA 154 L K + +I VG GVGKTT I KL+ K S KV L DT+R A Sbjct: 178 KSALEKNIEISKTEEKGIITFVGPTGVGKTTTIAKLAGKFSLIEKKKVGLITVDTYRIGA 237 Query: 155 IDQLKIWADRTSADF----VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 ++QL+ +AD + F E+ EA K Q D++++DT GR N + Sbjct: 238 VEQLRTYADIMNLPFKVVLTLKEMD--------EAIKSMQ--NCDIILVDTTGRSSKNKM 287 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 ++ + + L+ + V+ ATT L + + +I+TK+D T Sbjct: 288 QISELRAFVSKTNSLNINL------VISATTKNRDLEAIIDGYRQLDFQNVIITKLDETT 341 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGIND 297 G +I I+ P+ ++ G+ + D Sbjct: 342 TYGSIINILNYAHKPLSYVTTGQNVPD 368 >gi|328479900|gb|EGF48970.1| signal recognition particle-docking protein FtsY [Lactobacillus rhamnosus MTCC 5462] Length = 81 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/76 (44%), Positives = 50/76 (65%) Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 VL VLDATTGQNAL Q + F+ TG+++TK+DG+ +GG ++ I +PV +G+G Sbjct: 1 VLLVLDATTGQNALNQAKEFNQTTQITGIVLTKLDGSGKGGIVLAIRNELHVPVKLVGLG 60 Query: 293 EGINDLEPFVAKDFSA 308 E ++DL+ F F A Sbjct: 61 EKMDDLQAFDPTKFVA 76 >gi|225619296|ref|YP_002720522.1| flagellar biosynthesis regulator FlhF [Brachyspira hyodysenteriae WA1] gi|225214115|gb|ACN82849.1| flagellar biosynthesis regulator FlhF [Brachyspira hyodysenteriae WA1] Length = 679 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 18/190 (9%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +I+ VG GVGKTT I K++ + +G KV D +R AA+DQL+ +A F Sbjct: 483 KKKIIVFVGPTGVGKTTTIPKIAAQYLKSGKKVSFVTIDNYRIAAVDQLQRYASIMKVPF 542 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVD---VLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 S AL +A+ +K+D +L IDT GR + + + K + R D Sbjct: 543 TS---ASTPEAL------RAEIRKMDNSSLLFIDTMGRSPKGAEDIVAMSKYFTTVGRFD 593 Query: 227 PHAPHSVLQVLDATTG-QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 + V+ AT ++AL+ + F G+I+TK+D T I + K+P Sbjct: 594 ----MDIQLVMSATAKYKDALKILNGFKPT-NYKGVILTKVDETDYLASSICAITKKKLP 648 Query: 286 VYFLGVGEGI 295 + ++ G+G+ Sbjct: 649 ITYITHGQGV 658 >gi|52080243|ref|YP_079034.1| flagellar biosynthesis regulator FlhF [Bacillus licheniformis ATCC 14580] gi|52785620|ref|YP_091449.1| flagellar biosynthesis regulator FlhF [Bacillus licheniformis ATCC 14580] gi|319645978|ref|ZP_08000208.1| FlhF protein [Bacillus sp. BT1B_CT2] gi|52003454|gb|AAU23396.1| flagella-associated protein [Bacillus licheniformis ATCC 14580] gi|52348122|gb|AAU40756.1| FlhF [Bacillus licheniformis ATCC 14580] gi|317391728|gb|EFV72525.1| FlhF protein [Bacillus sp. BT1B_CT2] Length = 370 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 102/212 (48%), Gaps = 25/212 (11%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 H +V+L G GVGKTT + KL+ + + K+ DT+R AA++QL+ +A+ +A Sbjct: 177 HSQYVVLF-GSTGVGKTTTLAKLAASSVLEKQKKIAFITTDTYRIAAVEQLRTYAELLNA 235 Query: 168 DF-VCSEIGSDAAALAYEAFKQAQAKKVDV--LIIDTAGRLHNNSILMAGIGKMIRVLKR 224 VC E FK AQ K D + IDTAGR + G+ +R LK Sbjct: 236 PLEVC---------YTKEEFKAAQQKFADFDHVFIDTAGRNFKD-------GQYVRELKE 279 Query: 225 LDPHAPH-SVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 + P V+ AT+ +++ ++ F ++ LI TK+D T G ++ ++ Sbjct: 280 IIPFERKIQAFLVMSATSKYEDMKELIKQFSSIP-IDQLIFTKVDETDSLGSVMNLLAES 338 Query: 283 KIPVYFLGVGEGI-NDLEPFVAKDFSAVITGC 313 +I + ++ G+ + D+ F ++TGC Sbjct: 339 RIGLGYITNGQNVPEDIRYLSNAAFVRLLTGC 370 >gi|148380602|ref|YP_001255143.1| flagellar biosynthesis protein FlhF [Clostridium botulinum A str. ATCC 3502] gi|153933547|ref|YP_001384889.1| flagellar biosynthesis regulator FlhF [Clostridium botulinum A str. ATCC 19397] gi|153935713|ref|YP_001388358.1| flagellar biosynthesis regulator FlhF [Clostridium botulinum A str. Hall] gi|148290086|emb|CAL84205.1| putative flagellar biosynthesis protein [Clostridium botulinum A str. ATCC 3502] gi|152929591|gb|ABS35091.1| flagellar biosynthesis protein FlhF [Clostridium botulinum A str. ATCC 19397] gi|152931627|gb|ABS37126.1| flagellar biosynthesis protein FlhF [Clostridium botulinum A str. Hall] Length = 408 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 17/189 (8%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V ++VG GVGKTT I KL+ K+S D KV L DT+R A++QLK +AD + F Sbjct: 213 KVTVLVGPTGVGKTTTIAKLAGKLSLIDKK-KVGLITIDTYRIGAVEQLKTYADIMNIPF 271 Query: 170 -VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V I A+ + DV+++DT GR N + ++ + I +K Sbjct: 272 KVVFSIKDMEKAIIDLDY-------CDVILVDTTGRSSKNMMQISELRAFIEKIK----- 319 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 SV V+ A+T + + +++ +I+TK+D T+ G ++ I+ K P+ F Sbjct: 320 -EKSVHLVISASTKNKDIETIVKGYSILEYENIIITKLDETSIYGSILTILDKGKNPISF 378 Query: 289 LGVGEGIND 297 + G+ + D Sbjct: 379 ITTGQDVPD 387 >gi|254519404|ref|ZP_05131460.1| flagellar biosynthesis regulator FlhF [Clostridium sp. 7_2_43FAA] gi|226913153|gb|EEH98354.1| flagellar biosynthesis regulator FlhF [Clostridium sp. 7_2_43FAA] Length = 383 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/275 (22%), Positives = 135/275 (49%), Gaps = 29/275 (10%) Query: 28 LKEGITDI--ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85 +KE + +I + +R + + +EE +D+++ + + ++++E+LT +Y ++ Sbjct: 112 IKEEVKEIKDLLNRVIKNTNKEEEKDIVLEYLKDIDIDDELIKEVLTDKYD---NIDEFK 168 Query: 86 YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVML 144 EL+ + ++ + +++VG GVGKTT I KL+ +++ KV L Sbjct: 169 TYFKELLENEIQVCTESLSGK-------VVLVGPTGVGKTTTIAKLAGRLALIEKKKVGL 221 Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTA 202 DT+R A++QLK +A+ + F + + + A + + DV++IDT Sbjct: 222 ITIDTYRIGAVEQLKTYAEIMNIPF--------KVVITLKEMENAVSELEDCDVILIDTT 273 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GR N++ ++ + + + +A H L V+ TT ++ + ++ G +I Sbjct: 274 GRSSKNTMQISELRAFTQKV-----NADHIAL-VISGTTKNRDIQTIINGYSEIGYEKII 327 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 +TK+D T+ G + I+ + P+ ++ G+ + D Sbjct: 328 ITKLDETSSYGCIYNIIKKAQKPIAYITTGQNVPD 362 >gi|313672890|ref|YP_004051001.1| flagellar biosynthetic protein flhf [Calditerrivibrio nitroreducens DSM 19672] gi|312939646|gb|ADR18838.1| flagellar biosynthetic protein FlhF [Calditerrivibrio nitroreducens DSM 19672] Length = 390 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 97/203 (47%), Gaps = 15/203 (7%) Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAA 154 L+P+ K ++ S R V+ +VG GVGKTT I K++ ++ KV L + DTFR A Sbjct: 178 LIPVEK--DYFSSIRQKVLALVGPTGVGKTTTIAKIAANLALKLQKKVCLISVDTFRIGA 235 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 ++QLK +++ + +D + + K D +++D+ GR ++ ++ Sbjct: 236 VEQLKTYSEIIDVPLYVASNPADLDEII------GEVKHYDYILLDSMGRSQFDTEQISE 289 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + K + V + SV V+ ++ L + +A +I TK+D T G Sbjct: 290 LKKFMDVSPLI------SVALVMSMSSNHIELYDIYDRYARLMPNFVIFTKLDETRYFGP 343 Query: 275 LIPIVVTHKIPVYFLGVGEGIND 297 L+ I + KIP+ L G+ + D Sbjct: 344 LVNIPLIKKIPIMLLSTGQNVPD 366 >gi|257487159|ref|ZP_05641200.1| signal recognition particle protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 269 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 6/116 (5%) Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 DTAGRLH + +M I + K P L V+DA TGQ+A + F T Sbjct: 1 DTAGRLHVDVEMMGEIQALHAATK------PAETLFVVDAMTGQDAANTAKAFGDALPLT 54 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 G+I+TK+DG ARGG + + P+ F+G+GE LEPF ++ I G D Sbjct: 55 GVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASRILGMGD 110 >gi|226950057|ref|YP_002805148.1| flagellar biosynthesis protein FlhF [Clostridium botulinum A2 str. Kyoto] gi|226843456|gb|ACO86122.1| flagellar biosynthesis protein FlhF [Clostridium botulinum A2 str. Kyoto] Length = 408 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 19/189 (10%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF- 169 V ++VG GVGKTT I KL+ K+S D KV L DT+R A++QLK +AD + F Sbjct: 214 VTVLVGPTGVGKTTTIAKLAGKLSLIDKK-KVGLITIDTYRIGAVEQLKTYADIMNIPFK 272 Query: 170 -VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V S + A + + DV+++DT GR N + ++ + I +K Sbjct: 273 VVFSMKDMEKAIIDLDY--------CDVILVDTTGRSSKNMMQISELRAFIEKIK----- 319 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 SV V+ A+T + + +++ +I+TK+D T+ G ++ ++ K P+ F Sbjct: 320 -EKSVHLVISASTKNKDVETIIKGYSILEYENIIITKLDETSIYGSILTVLDKGKKPISF 378 Query: 289 LGVGEGIND 297 + G+ + D Sbjct: 379 ITTGQDVPD 387 >gi|332297779|ref|YP_004439701.1| GTP-binding signal recognition particle SRP54 G- domain protein [Treponema brennaborense DSM 12168] gi|332180882|gb|AEE16570.1| GTP-binding signal recognition particle SRP54 G- domain protein [Treponema brennaborense DSM 12168] Length = 432 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 21/202 (10%) Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKM------SDAGLKVMLAAGDTFRSAAIDQLKI 160 F RP V+++VG GVGKTT + KL+ + +D L + + D FR AA +QL Sbjct: 191 FKRRPKVLILVGPTGVGKTTTVAKLAAQYRFQKGDNDERLSIRMVTIDRFRIAAQEQLAK 250 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 + + +E D + + K+DV++IDT G ++ IG+M + Sbjct: 251 YGEHMDIPTTAAESADDIRDIL-----AIHSGKLDVMLIDTIGYSPHD---YESIGRMRK 302 Query: 221 VL--KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +L L P +V A+ ++ +R E F A +I+TK D T G ++ + Sbjct: 303 ILDVPGLKPEVYLTVSAATKASDLRDIMRNYETFDYKA----VIVTKYDETNHIGNVLSV 358 Query: 279 VVTHKIPVYFLGVGEGI-NDLE 299 + PV ++ G+ + D+E Sbjct: 359 LAEKDKPVAYISTGQKVPRDIE 380 >gi|320538193|ref|ZP_08038088.1| SRP54-type protein, GTPase domain protein [Treponema phagedenis F0421] gi|320145010|gb|EFW36731.1| SRP54-type protein, GTPase domain protein [Treponema phagedenis F0421] Length = 439 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 88/191 (46%), Gaps = 20/191 (10%) Query: 114 ILVVGVNGVGKTTVIGKLS-------KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 I +VG GVGKTT + KL+ K +V + D FR A+ ++ + + Sbjct: 233 IALVGPTGVGKTTTLAKLAAFYFKFESKRKQKQQRVKVITTDFFRIGAVSHMERYCEVMG 292 Query: 167 ADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 DF C G+D + Y Q +A DV+ IDTAGR N++ + + K Sbjct: 293 IDF-C---GADTIPTFVTYLTLYQNEA---DVVCIDTAGRAANDTNNIKKTVEYFEAAKN 345 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 +D + + A T + LR++ + V T LI+TK D T R G L+ + KI Sbjct: 346 ID----FEMYLTVAAGTKTSDLREIFQQYDVFNYTSLIITKFDETLRIGNLLSALKDIKI 401 Query: 285 PVYFLGVGEGI 295 P+ ++ G+ + Sbjct: 402 PISYITFGQTV 412 >gi|330944144|gb|EGH46267.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. pisi str. 1704B] gi|330980007|gb|EGH78273.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 77 Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 30/66 (45%), Positives = 44/66 (66%) Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL Sbjct: 1 TGQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRT 60 Query: 301 FVAKDF 306 F A+ F Sbjct: 61 FEAEPF 66 >gi|150390464|ref|YP_001320513.1| GTP-binding signal recognition particle [Alkaliphilus metalliredigens QYMF] gi|149950326|gb|ABR48854.1| GTP-binding signal recognition particle SRP54, G- domain [Alkaliphilus metalliredigens QYMF] Length = 391 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 21/192 (10%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD- 168 P +I VG GVGKTT I KL+ + + G V L + DT+R AA++QL+ ++D + Sbjct: 197 PQIIFFVGPTGVGKTTTIAKLAAHHALNEGQSVGLISADTYRIAAVEQLRTYSDILNIPL 256 Query: 169 ---FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 + SEI L ++ D++ IDTAGR H N I ++ +L+++ Sbjct: 257 EVVYKSSEINKAIDNLKHK----------DLIFIDTAGRSHKNK---EQILELETLLQQI 303 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 + V V+ TT ++++ + LI TK+D + G +I + + P Sbjct: 304 E---CKEVYFVISCTTRTVDIKEMIKAYDFLKDYKLIFTKLDEASTFGTIINTAMFIQKP 360 Query: 286 VYFLGVGEGIND 297 + ++ G+ + D Sbjct: 361 LSYITTGQSVPD 372 >gi|168182728|ref|ZP_02617392.1| flagellar biosynthesis protein FlhF [Clostridium botulinum Bf] gi|182674220|gb|EDT86181.1| flagellar biosynthesis protein FlhF [Clostridium botulinum Bf] Length = 408 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 19/189 (10%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF- 169 V ++VG GVGKTT I KL+ K+S D KV L DT+R A++QLK +AD + F Sbjct: 214 VTVLVGPTGVGKTTTIAKLAGKLSLIDKK-KVGLITIDTYRIGAVEQLKTYADIMNIPFK 272 Query: 170 -VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V S + A + + DV+++DT GR N + ++ + I +K Sbjct: 273 VVFSMKDMEKAIIDLDY--------CDVILVDTTGRSSKNMMQISELRAFIEKIK----- 319 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 SV V+ A+T + + +++ +I+TK+D T+ G ++ ++ K P+ F Sbjct: 320 -EKSVHLVISASTKNKDVETIIRGYSILEYENIIITKLDETSIYGSILTVLDKGKKPISF 378 Query: 289 LGVGEGIND 297 + G+ + D Sbjct: 379 ITTGQDVPD 387 >gi|319957082|ref|YP_004168345.1| GTP-binding signal recognition particle srp54 g- domain protein [Nitratifractor salsuginis DSM 16511] gi|319419486|gb|ADV46596.1| GTP-binding signal recognition particle SRP54 G- domain protein [Nitratifractor salsuginis DSM 16511] Length = 353 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 96/211 (45%), Gaps = 20/211 (9%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 P V+++VG GVGKTT I KL+ + S D KV L DT+R+ A +QL +A Sbjct: 154 PRVMMMVGPTGVGKTTTIAKLAARYSYLLDREYKVALINLDTWRAGAYEQLDNFARILHL 213 Query: 168 DFVCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAG-RLHNNSILMAGIGKMIRVLKR 224 + +E E F Q K DV+++DTAG ++ L+ K I LK Sbjct: 214 EHRRAE--------RIEEFAQHLDALKDYDVVLVDTAGISPYDTDRLI----KTIEFLKS 261 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 + + L V+ AT +R++ I+TK D T R G LI + + Sbjct: 262 VQNREITTSL-VISATAKYEDIREIYEHFNFIRVDNAIVTKFDETQRVGDLIAFLTEKHL 320 Query: 285 PVYFLGVGEGI-NDLEPFVAKDFSAVITGCL 314 PV ++ G+ + +DL P + TG L Sbjct: 321 PVSYISTGQKVPDDLLPASKERILEAFTGEL 351 >gi|237796084|ref|YP_002863636.1| flagellar biosynthesis protein FlhF [Clostridium botulinum Ba4 str. 657] gi|229260865|gb|ACQ51898.1| flagellar biosynthesis protein FlhF [Clostridium botulinum Ba4 str. 657] Length = 408 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 19/189 (10%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF- 169 V ++VG GVGKTT I KL+ K+S D KV L DT+R A++QLK +AD + F Sbjct: 214 VTVLVGPTGVGKTTTIAKLAGKLSLIDKK-KVGLITIDTYRIGAVEQLKTYADIMNIPFK 272 Query: 170 -VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V S + A + + DV+++DT GR N + ++ + I +K Sbjct: 273 VVFSMKDMEKAIIDLDY--------CDVILVDTTGRSSKNMMQISELRAFIEKIK----- 319 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 SV V+ A+T + + +++ +I+TK+D T+ G ++ ++ K P+ F Sbjct: 320 -EKSVHLVISASTKNKDVETIIRGYSILEYENIIITKLDETSIYGSILTVLDKGKKPISF 378 Query: 289 LGVGEGIND 297 + G+ + D Sbjct: 379 ITTGQDVPD 387 >gi|302670741|ref|YP_003830701.1| flagellar biosynthesis protein FlhF [Butyrivibrio proteoclasticus B316] gi|302395214|gb|ADL34119.1| flagellar biosynthesis protein FlhF [Butyrivibrio proteoclasticus B316] Length = 422 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 85/188 (45%), Gaps = 10/188 (5%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P + +G GVGKTT I KL+ ++S KV L DT+R AA +QL+ +A F Sbjct: 225 PRAEIFIGPTGVGKTTTIAKLASELSVTQKKKVALVTVDTYRIAAAEQLRTYASILEIPF 284 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 D E FK D +++DTAG +N L + I IR L+ L Sbjct: 285 RVI-YSVDEMKQVAEDFKD-----YDYIMVDTAGHSQHNDELKSDIEAYIRTLEDLMDCE 338 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 + VL ATT L ++ ++ LI TKMD T G + + + PV ++ Sbjct: 339 NYLVLS---ATTKYRDLIEIADSYSELVAYKLIFTKMDETGAKGNVYNMRMHTGAPVAYI 395 Query: 290 GVGEGIND 297 G+ + D Sbjct: 396 TNGQNVPD 403 >gi|153818948|ref|ZP_01971615.1| signal recognition particle-docking protein FtsY [Vibrio cholerae NCTC 8457] gi|126510510|gb|EAZ73104.1| signal recognition particle-docking protein FtsY [Vibrio cholerae NCTC 8457] Length = 266 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 75/133 (56%), Gaps = 1/133 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ KI+ L Sbjct: 81 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 140 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + + + LY + E + ++L + +P D +P+VIL+VGVNGVGKTT IGK Sbjct: 141 ARASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 200 Query: 131 LSKKMSDAGLKVM 143 L+K+ G KVM Sbjct: 201 LAKQFQAQGKKVM 213 >gi|258511393|ref|YP_003184827.1| flagellar biosynthetic protein FlhF [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478119|gb|ACV58438.1| flagellar biosynthetic protein FlhF [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 381 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 94/187 (50%), Gaps = 13/187 (6%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V+ VG GVGKTT I K++ AG + V L DTFR AA++QLK +AD + Sbjct: 186 RVVAFVGPTGVGKTTTIAKIAALHVLAGQRRVGLLTTDTFRIAAVEQLKTYADILNVPIA 245 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 ++ D ++ A + D++++DTAGR N + A I + R+L ++ A Sbjct: 246 IADEPEDVSS------ALASLQSCDLVLVDTAGR---NFLNPASIEQTKRMLTPIE--AD 294 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 +L V AT +AL+ M ++ I TK+D T G + +V ++P+ ++ Sbjct: 295 EVLLVVSLATKPTDALKVANMAKPLS-VDKFIFTKLDETESVGMIPSLVALCQLPIAYVT 353 Query: 291 VGEGIND 297 G+ + D Sbjct: 354 TGQNVPD 360 >gi|150021315|ref|YP_001306669.1| flagellar biosynthesis regulator FlhF [Thermosipho melanesiensis BI429] gi|149793836|gb|ABR31284.1| GTP-binding signal recognition particle SRP54, G- domain [Thermosipho melanesiensis BI429] Length = 373 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 22/243 (9%) Query: 57 DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116 D+ + +K++E + K D + + +SE+ +P K N D + + ++ Sbjct: 126 DVNQEIIEKVIEYIRIKYGKIDFEDENTRFVLSEI----FLPFIKTDNPDITGK---VMF 178 Query: 117 VGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VG GVGKTT + KL+ KMS + KV + DT+R AA +QLK +A +I Sbjct: 179 VGPTGVGKTTTLAKLAAKMSINEHKKVGILTLDTYRIAATEQLKTYA-------TLMDIP 231 Query: 176 SDAAALAYEAFKQAQA-KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 A EA + +A +V+ IDTAGR N + M I M ++ +P Sbjct: 232 MRVAYTPKEAKIELEAMADFEVVFIDTAGRSQKNELQMNEIKAMAEII------SPDYKF 285 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 V+ + L + T +I+TKMD T+ G + P+ ++ G+ Sbjct: 286 LVVGMQYRSSDLELISKKFNDVSPTHIILTKMDETSSLGHFLNAGHFINKPIIYITNGQR 345 Query: 295 IND 297 + D Sbjct: 346 VPD 348 >gi|295706265|ref|YP_003599340.1| flagellar biosynthetic protein FlhF [Bacillus megaterium DSM 319] gi|294803924|gb|ADF40990.1| flagellar biosynthetic protein FlhF [Bacillus megaterium DSM 319] Length = 365 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 90/195 (46%), Gaps = 18/195 (9%) Query: 116 VVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 VVG GVGKTT + KL+ K + + K+ DT+R +AI+QLK +A +A Sbjct: 174 VVGPTGVGKTTTLAKLAAKCVLEHNQKIAFITTDTYRISAIEQLKTYASILNAPLTICYN 233 Query: 175 GSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 G+D FK+A + + DV+ IDTAGR + + K+I + L Sbjct: 234 GAD--------FKKALLETEAYDVIFIDTAGRNFLEQQYVNDLKKIITFQEDL------Q 279 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 VL T+ + ++ V A LI TK D T R G L+ ++ + F G Sbjct: 280 TFLVLALTSKVSDMKAVYERFASLPVDHLIFTKQDETTRKGSLLNMLYHYGQRAAFTTNG 339 Query: 293 EGI-NDLEPFVAKDF 306 + + D+ F K+F Sbjct: 340 QDVPEDVSAFKIKEF 354 >gi|32266642|ref|NP_860674.1| flagellar biosynthesis regulator FlhF [Helicobacter hepaticus ATCC 51449] gi|32262693|gb|AAP77740.1| flagellar GTP-binding protein FlhF [Helicobacter hepaticus ATCC 51449] Length = 483 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 100/217 (46%), Gaps = 27/217 (12%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAA 146 E++ KM+ +P N S+ +I++VG GVGKTT + KL+ + S + +V + Sbjct: 264 EVLRKMI--YCRPENLQ-SNAKKIIMLVGPTGVGKTTTLAKLAARYSLMLNQRYRVGVVT 320 Query: 147 GDTFRSAAIDQLKIWAD--RTSADFVC--SEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 DT+R AA+DQL +A + S D V E G +L K D ++IDTA Sbjct: 321 LDTYRLAAVDQLMAYARMMKLSIDTVVEPEEFGKAIDSL----------KHCDYILIDTA 370 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 G ++ + + + ++D V VL LR + LI Sbjct: 371 GHSQHDRSKLQALKSYLNNDYKID------VSLVLAINAKYEDLRDTYNAFSEMNIDTLI 424 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDL 298 +K+D + G + +V K P+ +L +G+G+ NDL Sbjct: 425 FSKLDESRNFGNMFSLVYETKKPISYLSIGQGVPNDL 461 >gi|302761688|ref|XP_002964266.1| hypothetical protein SELMODRAFT_81201 [Selaginella moellendorffii] gi|300167995|gb|EFJ34599.1| hypothetical protein SELMODRAFT_81201 [Selaginella moellendorffii] Length = 221 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 12/173 (6%) Query: 47 EELEDLLIRSDIGVAVAQ-------KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99 E+ L+++D+ + Q K VE+L + + + V +++ + ++ Sbjct: 33 NEITHALLQADVQFKLVQALSSNVRKSVEKLAAGHDKRHIIQKAVFHEL-----RAMLDA 87 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 KP R +V+++VG+ G GKTT K + G L DTFR+ A DQLK Sbjct: 88 GKPSFTPTKGRTNVVMLVGLQGCGKTTTCSKYALHYRKKGFNPALVCADTFRAGAFDQLK 147 Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 A + F S +D +A E ++ K D++I+DT+GR + L Sbjct: 148 QNATKVKIPFYGSYTETDPVVIAQEGVRKFADAKHDLIILDTSGRHKQENALF 200 >gi|251778674|ref|ZP_04821594.1| flagellar biosynthesis protein FlhF [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082989|gb|EES48879.1| flagellar biosynthesis protein FlhF [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 403 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 115/246 (46%), Gaps = 27/246 (10%) Query: 58 IGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116 I + V ++ EE+L+K D ++ D E++ K+ + + D S + I + Sbjct: 161 IEIDVDEQFHEEILSKINNTDDENI-----DKYEVLRKIFEDVFLECSKDISGK---IAL 212 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VG GVGKTT I KL+ K+S K V L DT+R AI+QLK +A+ + F Sbjct: 213 VGPTGVGKTTTIAKLAGKLSLIDKKRVGLITVDTYRIGAIEQLKTYAEIMNIPF------ 266 Query: 176 SDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 + + ++A DV++IDT GR N++ ++ + + + P V Sbjct: 267 --KVVITIKEMEEAINAMNDCDVILIDTTGRSSKNTMQISELRAFV------EKANPDYV 318 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 V+ ATT + + ++ +I+TK+D T G L I+ PV ++ G+ Sbjct: 319 SMVISATTKNRDIVSILNGYSDLSYDNVIITKLDETTVYGSLYNIMKISNKPVKYITTGQ 378 Query: 294 GI-NDL 298 + ND+ Sbjct: 379 NVPNDI 384 >gi|296125234|ref|YP_003632486.1| GTP-binding signal recognition particle SRP54 G- domain protein [Brachyspira murdochii DSM 12563] gi|296017050|gb|ADG70287.1| GTP-binding signal recognition particle SRP54 G- domain protein [Brachyspira murdochii DSM 12563] Length = 657 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 18/194 (9%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 D + +I+ VG GVGKTT I K++ + +G KV D +R AA+DQL+ +A Sbjct: 455 DVGAKKKIIVFVGPTGVGKTTTIPKIAAQHMKSGKKVSFVTIDNYRIAAVDQLQRYASIM 514 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVD---VLIIDTAGRLHNNSILMAGIGKMIRVL 222 F S AL +A+ +K+D +L IDT GR ++ + + K + Sbjct: 515 KVPFTS---ASTPEAL------RAEIRKMDNSSLLFIDTMGRSPKSAEEIVAMSKYFTTV 565 Query: 223 KRLDPHAPHSVLQVLDATTG-QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 R D + V+ AT ++A++ + F G+I+TK+D T I + Sbjct: 566 GRFD----MDIQLVMSATAKYKDAVKILNGFKPT-NYKGVILTKVDETDYLASSICAITR 620 Query: 282 HKIPVYFLGVGEGI 295 K+P+ ++ G+G+ Sbjct: 621 KKLPITYITHGQGV 634 >gi|226223312|ref|YP_002757419.1| flagellar biosynthesis protein FlhF [Listeria monocytogenes Clip81459] gi|225875774|emb|CAS04477.1| Putative flagellar biosynthesis protein FlhF [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 407 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 15/192 (7%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 +HR +I ++G GVGKTT + KL ++ V DTFRS A++Q + +AD+ A Sbjct: 205 NHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDA 262 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + + + + A L VD ++IDT GR + ++ I V+ Sbjct: 263 ELI---VATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVV----- 314 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVVTHKIP 285 H L ++G + + + +A G I+TKMD T R G L ++ +P Sbjct: 315 ---HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLP 371 Query: 286 VYFLGVGEGIND 297 V ++ G+ I + Sbjct: 372 VLYMTDGQNITE 383 >gi|195953857|ref|YP_002122147.1| GTP-binding signal recognition particle SRP54 G- domain [Hydrogenobaculum sp. Y04AAS1] gi|195933469|gb|ACG58169.1| GTP-binding signal recognition particle SRP54 G- domain [Hydrogenobaculum sp. Y04AAS1] Length = 373 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 61/247 (24%), Positives = 106/247 (42%), Gaps = 17/247 (6%) Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114 I + V Q I +++L D+++ R+ + + LSK + DFS I Sbjct: 123 ISMGVEQDIAKKILEDSCGFDININRLDLKYEDDYESLKEGLSKNISLKTLDFSKSILSI 182 Query: 115 L-VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 L +VG GVGKTT I KL+ G K + D++R+ A+ QL+ + + Sbjct: 183 LALVGPTGVGKTTTIAKLAYMYKTQGFKTGVITLDSYRTGAVQQLQSYVNLLEMPLRV-- 240 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +D E + +D++ IDTAGR +SI + + + + L+ + Sbjct: 241 --ADTPQKLRECI--GELSSLDIIFIDTAGRSQYDSIRLKELKHYLENVPSLE------I 290 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 + TT + + G +I TK+D T G ++ +P+ FL G+ Sbjct: 291 ALTVSTTTDERIILDSAKRFGELGIKSIIFTKLDETVYPGCIVNAAFKTNLPISFLTFGQ 350 Query: 294 GI-NDLE 299 + ND+E Sbjct: 351 KVPNDIE 357 >gi|217077811|ref|YP_002335529.1| flagellar biosynthesis regulator FlhF [Thermosipho africanus TCF52B] gi|217037666|gb|ACJ76188.1| flagellar biosynthesis protein FlhF [Thermosipho africanus TCF52B] Length = 378 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 86/186 (46%), Gaps = 15/186 (8%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 ++ VG GVGKTT + KL+ KMS + KV + DT+R AA +QLK +A Sbjct: 177 VMFVGPTGVGKTTTLAKLAAKMSINNHKKVGILTLDTYRIAATEQLKTYA-------TLM 229 Query: 173 EIGSDAAALAYEAFKQAQA-KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 +I A EA + +A D++ IDTAGR N + M I M ++ P Sbjct: 230 DIPMRVAYTPKEAKIELEAMADFDLVFIDTAGRSQKNDLQMNEIKAMSEIIN------PD 283 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 + V+ N + + + T +I+TKMD T+ G + I P+ F+ Sbjct: 284 FIFLVVGMQYRSNDVELITKKFSSVSPTHVILTKMDETSSLGHFLNIGHYINSPIIFVTN 343 Query: 292 GEGIND 297 G+ + D Sbjct: 344 GQRVPD 349 >gi|56419774|ref|YP_147092.1| flagellar biosynthesis regulator FlhF [Geobacillus kaustophilus HTA426] gi|56379616|dbj|BAD75524.1| flagellar biosynthetic protein (flagellar GTP-binding protein) [Geobacillus kaustophilus HTA426] Length = 409 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 118/258 (45%), Gaps = 28/258 (10%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYA-KDV-SVQRVLYDVSELIHKMLMPLSKPFNW 105 E E L+R + +++++ LL + YA KD S V E + +L L PF Sbjct: 152 EAERRLVRQGMADVYVRQVMDRLLERWYADKDSRSPAAVSAWTKEAVRDLLSTL--PFVK 209 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 + ++IL+ G GVGKTT + K++ + + + G KV DT+R AAIDQLK +AD Sbjct: 210 TAEQKKYMILL-GPTGVGKTTTLAKMAGRAVLEQGKKVGFITADTYRIAAIDQLKTYADI 268 Query: 165 TSADF-VCSEIGSDAAALAYEA--FKQAQAK--KVDVLIIDTAGRLHNNSILMAGIGKMI 219 A VC Y A F+ A+ K D++ +DTAGR N + + + + Sbjct: 269 LHAPLEVC-----------YNADDFRTAKRKLAGCDLVFVDTAGRNFRNPQYVDELQQTL 317 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 + V AT + ++ + + LI+TK+D T G ++ ++ Sbjct: 318 EF------DSETETFLVFAATGKYDDMKMIYNHFSRLPIDRLIVTKLDETDSFGTIVNVL 371 Query: 280 VTHKIPVYFLGVGEGIND 297 + ++ + G+ + D Sbjct: 372 LDSRLAAAYFTNGQNVPD 389 >gi|237755443|ref|ZP_04584068.1| flagellar biosynthesis protein FlhF [Sulfurihydrogenibium yellowstonense SS-5] gi|237692407|gb|EEP61390.1| flagellar biosynthesis protein FlhF [Sulfurihydrogenibium yellowstonense SS-5] Length = 399 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 75/304 (24%), Positives = 141/304 (46%), Gaps = 29/304 (9%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDD---GVREELEDLLIRSDIG 59 Q++ ++ I+ T + L +KE D I+ R + + G +L +LLI+ D+ Sbjct: 92 QEIVEKAEPVIKTTTHNDLNQKLNIKEEYYDNNITYREITEEFTGKALDLINLLIQKDVE 151 Query: 60 VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK--MLMPLSKPFNWD---F--SHRPH 112 + VA++IV R A + + D+ ++ ++ L K F + F S R Sbjct: 152 LTVAKEIV------RNACGLEMGSNKLDLKHFTYRESLIEGLEKSFIFKGDIFKDSDRRR 205 Query: 113 VILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 V+ +G GVGKTT + K++ K+ + KV + + DTF++ A DQ + + + F Sbjct: 206 VVAFLGPTGVGKTTNLFKVASKLILEENRKVAVVSIDTFKAGAGDQARSYCNILGIPF-- 263 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 +I SD L E VDVL+IDT GR H + + I + +R++ ++ Sbjct: 264 -QILSDPKKLR-ETVDDFDF--VDVLLIDTIGRSHYDHWKLGEIKETLRLIDEIE----- 314 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 ++ V + + ++ + L TK+D TA G ++ + K+P+ ++ Sbjct: 315 YMMVVSCNWKNKESYNLIQKYRKFFNINYLFFTKIDETAYPGTILNLAYKTKLPLTYIST 374 Query: 292 GEGI 295 G+ + Sbjct: 375 GQNV 378 >gi|297530586|ref|YP_003671861.1| flagellar biosynthetic protein FlhF [Geobacillus sp. C56-T3] gi|297253838|gb|ADI27284.1| flagellar biosynthetic protein FlhF [Geobacillus sp. C56-T3] Length = 390 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 118/258 (45%), Gaps = 28/258 (10%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYA-KD-VSVQRVLYDVSELIHKMLMPLSKPFNW 105 E E L+R + +++++ LL + YA KD S V E + +L L PF Sbjct: 133 EAERRLVRQGMADVYVRQVMDRLLERWYADKDGRSPAAVSAWTKEAVRDLLSTL--PFVK 190 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 + ++IL+ G GVGKTT + K++ + + + G KV DT+R AAIDQLK +AD Sbjct: 191 TAEQKKYMILL-GPTGVGKTTTLAKMAGRAVLEQGKKVGFITADTYRIAAIDQLKTYADI 249 Query: 165 TSADF-VCSEIGSDAAALAYEA--FKQAQAK--KVDVLIIDTAGRLHNNSILMAGIGKMI 219 A VC Y A F+ A+ K D++ +DTAGR N + + + + Sbjct: 250 LHAPLEVC-----------YNADDFRTAKRKLAGCDLVFVDTAGRNFRNPQYVDELQQTL 298 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 + V AT + ++ + + LI+TK+D T G ++ ++ Sbjct: 299 EF------DSETETFLVFAATGKYDDMKTIYNHFSRLPIDRLIVTKLDETDSFGTIVNVL 352 Query: 280 VTHKIPVYFLGVGEGIND 297 + ++ + G+ + D Sbjct: 353 LDSRLAAAYFTNGQNVPD 370 >gi|256088727|ref|XP_002580477.1| signal recognition particle receptor alpha subunit (sr-alpha) [Schistosoma mansoni] gi|238666057|emb|CAZ36716.1| signal recognition particle receptor alpha subunit (sr-alpha), putative [Schistosoma mansoni] Length = 658 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 63/288 (21%), Positives = 124/288 (43%), Gaps = 44/288 (15%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMP--- 98 E+L + L+ ++ +++A ++ + + + RV + E+ ++L+ Sbjct: 365 EQLRERLVGKNVAMSIADRVCSNVADRLVGTSLGTFERIYPRVRASLEEVCSRILVSGRR 424 Query: 99 ---LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK--------------LSKKMSDAGLK 141 L + RP+ I+ GVNGVGK+T + K + S K Sbjct: 425 VDVLRDALDARTQGRPYSIVFCGVNGVGKSTNLAKVCHLTKLLLQIFVFICAYQSCFCAK 484 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 V + F+ +++ K ++ V + + +A + +E Q + + DV+++DT Sbjct: 485 VPNTSMGRFKQTILNEFKRHPIAQASGRVDNAMAFEAKGIGFEC--QTRDRHFDVVLVDT 542 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF------HAV 255 AGR+ +N LM + +I+ + P VL V +A G A+ Q+ F H+ Sbjct: 543 AGRMQDNEPLMRALASLIQT------NQPDLVLFVGEALVGNEAVDQLVKFNQSLADHSY 596 Query: 256 AGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 + G+++TK D + G I + P+ F+G G+ +DL Sbjct: 597 SDRPRCIDGIVLTKFDTIDDKVGAAISMACISNQPIVFVGTGQTYSDL 644 >gi|256088725|ref|XP_002580476.1| signal recognition particle receptor alpha subunit (sr-alpha) [Schistosoma mansoni] gi|238666056|emb|CAZ36715.1| signal recognition particle receptor alpha subunit (sr-alpha), putative [Schistosoma mansoni] Length = 655 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 63/288 (21%), Positives = 124/288 (43%), Gaps = 44/288 (15%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMP--- 98 E+L + L+ ++ +++A ++ + + + RV + E+ ++L+ Sbjct: 362 EQLRERLVGKNVAMSIADRVCSNVADRLVGTSLGTFERIYPRVRASLEEVCSRILVSGRR 421 Query: 99 ---LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK--------------LSKKMSDAGLK 141 L + RP+ I+ GVNGVGK+T + K + S K Sbjct: 422 VDVLRDALDARTQGRPYSIVFCGVNGVGKSTNLAKVCHLTKLLLQIFVFICAYQSCFCAK 481 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 V + F+ +++ K ++ V + + +A + +E Q + + DV+++DT Sbjct: 482 VPNTSMGRFKQTILNEFKRHPIAQASGRVDNAMAFEAKGIGFEC--QTRDRHFDVVLVDT 539 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF------HAV 255 AGR+ +N LM + +I+ + P VL V +A G A+ Q+ F H+ Sbjct: 540 AGRMQDNEPLMRALASLIQT------NQPDLVLFVGEALVGNEAVDQLVKFNQSLADHSY 593 Query: 256 AGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 + G+++TK D + G I + P+ F+G G+ +DL Sbjct: 594 SDRPRCIDGIVLTKFDTIDDKVGAAISMACISNQPIVFVGTGQTYSDL 641 >gi|222832233|gb|EEE70710.1| predicted protein [Populus trichocarpa] Length = 143 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 2/114 (1%) Query: 32 ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSE 90 I + + +++D + EELED L+ +D GV + ++ +L + + AK V +++ Sbjct: 15 IATVFTGTQINDALYEELEDALLMADTGVKATEHLLADLRRRVKEAKATDPAAVKALLAD 74 Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 + +L PL KP H+P VI+V GVNG GKTT IGKL++ ++D G V+L Sbjct: 75 ALADLLRPLEKPLVIG-EHQPTVIMVAGVNGAGKTTSIGKLTRHLADEGQSVLL 127 >gi|187933078|ref|YP_001885060.1| flagellar biosynthesis regulator FlhF [Clostridium botulinum B str. Eklund 17B] gi|187721231|gb|ACD22452.1| flagellar biosynthesis protein FlhF [Clostridium botulinum B str. Eklund 17B] Length = 403 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 18/189 (9%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 I +VG GVGKTT I KL+ K+S K V L DT+R AI+QLK +A+ + F Sbjct: 210 IALVGPTGVGKTTTIAKLAGKLSLIDKKSVGLITVDTYRIGAIEQLKTYAEIMNIPF--- 266 Query: 173 EIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + + ++A DV++IDT GR N++ ++ + + + P Sbjct: 267 -----KVVITIKEMEEAINSMNDCDVILIDTTGRSSKNTMQISELRAFV------EKANP 315 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 V V+ ATT + + ++ +I+TK+D T G L I+ PV ++ Sbjct: 316 DYVSMVISATTKNRDIVSILNGYSDLSYDNVIITKLDETTVYGSLYNIMKRSNKPVKYIT 375 Query: 291 VGEGI-NDL 298 G+ + ND+ Sbjct: 376 TGQNVPNDM 384 >gi|118444135|ref|YP_877993.1| flagellar biosynthesis regulator FlhF [Clostridium novyi NT] gi|118134591|gb|ABK61635.1| flagellar biosynthesis protein flhF [Clostridium novyi NT] Length = 411 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 53/202 (26%), Positives = 96/202 (47%), Gaps = 14/202 (6%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 V+ +VG GVGKTT I KL+ +++ KV L DT+R AI+QL +A S F Sbjct: 217 VVALVGPTGVGKTTTIAKLAGRLALIEKKKVGLITVDTYRIGAIEQLSTYASIMSIPF-K 275 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 S A E+ K + ++++DT GR N + +A + ++ Sbjct: 276 SVFSIKEMEAALESMKDCE-----IILLDTTGRSSKNIMQIAELNAFVQ------KANSK 324 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 +V V+ ATT + + + T +I+TK+D T G ++ I+ + P+ F+ Sbjct: 325 NVFLVISATTKNRDIESIIEGYKTLNYTNVIITKLDETTTYGSILNILNSANKPLSFVTT 384 Query: 292 GEGI-NDLEPFVAKDFSAVITG 312 G+ + +D + ++ + ++ G Sbjct: 385 GQNVPDDFKSITKEEVAKLVLG 406 >gi|322379815|ref|ZP_08054112.1| flagellar biosynthesis regulator FlhF [Helicobacter suis HS5] gi|321147783|gb|EFX42386.1| flagellar biosynthesis regulator FlhF [Helicobacter suis HS5] Length = 459 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS---KKM 135 V+V+R E++ KM+ + + ++ ++++VG GVGKTT + KL+ KM Sbjct: 230 VTVKRYF---REVLRKMIYCRHEGLDLNYKK---ILMLVGPTGVGKTTTLAKLAARYSKM 283 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRT--SADFV--CSEIGSDAAALAYEAFKQAQA 191 D KV + DT+R A++QL +A + S + V + + AL Y Sbjct: 284 LDKKYKVGILTLDTYRIGAVEQLVWYAKKMKISIETVMDTQDFDREMQALEY-------- 335 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 DV++IDT G ++S + + K ++D VL TT L+ + Sbjct: 336 --CDVVLIDTTGHSQHDSKKIENLKKFTENGYKID------TTLVLSLTTKYEDLKDIYQ 387 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 + LI TK+D + G L +V K P+ +L +G+ + Sbjct: 388 AFSPLEIDSLIFTKLDESRGFGNLFSLVYESKKPISYLSIGQEV 431 >gi|302874607|ref|YP_003843240.1| flagellar biosynthetic protein FlhF [Clostridium cellulovorans 743B] gi|307690782|ref|ZP_07633228.1| flagellar biosynthesis regulator FlhF [Clostridium cellulovorans 743B] gi|302577464|gb|ADL51476.1| flagellar biosynthetic protein FlhF [Clostridium cellulovorans 743B] Length = 410 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 95/191 (49%), Gaps = 14/191 (7%) Query: 107 FSHRPH-VILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADR 164 F P+ V+++VG GVGKTT I KL+ + S KV L DT+R A++QLK +++ Sbjct: 209 FEKTPNKVVILVGPTGVGKTTTIAKLAGRYSLMEKKKVGLITLDTYRIGAVEQLKTYSEI 268 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + F SD +A + F D+++IDT GR N++ ++ + + + Sbjct: 269 MNIPFKVIFNMSD-MEIAIKEFDYC-----DIILIDTTGRSSKNAMQISELRAYLHKV-- 320 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 A ++ VL +TT + + + +I+TK+D T+ G +I I+ + Sbjct: 321 ----ATDNIYLVLSSTTKNKDIEAIIEGYRPLNYNAVIITKLDETSTYGSVINILQDSQK 376 Query: 285 PVYFLGVGEGI 295 P+ F+ G+ + Sbjct: 377 PLGFITTGQSV 387 >gi|261419439|ref|YP_003253121.1| flagellar biosynthesis regulator FlhF [Geobacillus sp. Y412MC61] gi|319766254|ref|YP_004131755.1| flagellar biosynthetic protein FlhF [Geobacillus sp. Y412MC52] gi|261375896|gb|ACX78639.1| flagellar biosynthetic protein FlhF [Geobacillus sp. Y412MC61] gi|317111120|gb|ADU93612.1| flagellar biosynthetic protein FlhF [Geobacillus sp. Y412MC52] Length = 400 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 70/258 (27%), Positives = 119/258 (46%), Gaps = 28/258 (10%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYA-KD-VSVQRVLYDVSELIHKMLMPLSKPFNW 105 E E L+R + +++++ LL + YA KD S V E + +L L PF Sbjct: 143 EAERRLVRQGMADVYVRQVMDRLLERWYADKDGRSPAAVSAWTKEAVRDLLSTL--PFVK 200 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 + ++IL+ G GVGKTT + K++ + + + G KV DT+R AAIDQLK +AD Sbjct: 201 TAEQKKYMILL-GPTGVGKTTTLAKMAGRAVLEQGKKVGFITADTYRIAAIDQLKTYADI 259 Query: 165 TSADF-VCSEIGSDAAALAYEA--FKQAQAK--KVDVLIIDTAGRLHNNSILMAGIGKMI 219 A VC Y A F+ A+ K D++ +DTAGR N + + + Sbjct: 260 LHAPLEVC-----------YNADDFRTAKRKLAGCDLVFVDTAGRNFRNPQYVDELQQT- 307 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 L+ + V AT + ++ + + LI+TK+D T G ++ ++ Sbjct: 308 -----LEFDSETETFLVFAATGKYDDMKTIYNHFSRLPIDRLIVTKLDETDSFGTIVNVL 362 Query: 280 VTHKIPVYFLGVGEGIND 297 + ++ + G+ + D Sbjct: 363 LDSRLAAAYFTNGQNVPD 380 >gi|220932504|ref|YP_002509412.1| GTP-binding signal recognition particle SRP54 G- domain protein [Halothermothrix orenii H 168] gi|219993814|gb|ACL70417.1| GTP-binding signal recognition particle SRP54 G- domain protein [Halothermothrix orenii H 168] Length = 356 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 58/250 (23%), Positives = 120/250 (48%), Gaps = 14/250 (5%) Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 +EL+ K V Q+ L + E ++ +P + + + V+L G GVGKTT Sbjct: 118 QELMKKLKNASVDSQKSLISLLERKLNQVIGNPEPIRVNRNEQ-KVVLFAGPTGVGKTTT 176 Query: 128 IGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 I KL+ + + D +KV L DT+R AA+ QL+ ++D + + + + + Sbjct: 177 IAKLAARFALDKEVKVGLITADTYRIAAVQQLQTYSDIINIPLHVVYNERELSQIIRDKL 236 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 K+ Q ++++DTAG N+ + +G++ + R H ++ + +T + Sbjct: 237 KKYQ-----LILVDTAGSSWNDQL---QLGRLKKFASRNYVDEIHLLISM---STKSEDI 285 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKD 305 + + ++ L++TK+D T G ++ I +K+P ++ G+ + +D++P ++ Sbjct: 286 KGILKKFSIIKPDKLLLTKLDETTTYGDIVNIKREYKLPYSYITYGQDVPDDIKPARKEE 345 Query: 306 FSAVITGCLD 315 I G L+ Sbjct: 346 LIQYILGDLN 355 >gi|224151767|ref|XP_002189896.1| PREDICTED: hypothetical protein, partial [Taeniopygia guttata] Length = 173 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 49/86 (56%) Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P +++ V+DA+ GQ Q + F +I+TK+DG A+GGG + V K P+ F+ Sbjct: 2 PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 61 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE I+D EPF + F + + G D Sbjct: 62 GTGEHIDDFEPFKTQPFISKLLGMGD 87 >gi|168180931|ref|ZP_02615595.1| flagellar biosynthesis protein FlhF [Clostridium botulinum NCTC 2916] gi|182668293|gb|EDT80272.1| flagellar biosynthesis protein FlhF [Clostridium botulinum NCTC 2916] Length = 408 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 93/189 (49%), Gaps = 17/189 (8%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 V ++VG GVGKTT I KL+ K+S D KV L DT+R A++QLK +AD + F Sbjct: 213 KVTVLVGPTGVGKTTTIAKLAGKLSLIDKK-KVGLITIDTYRIGAVEQLKTYADIMNIPF 271 Query: 170 -VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V I A+ + D +++DT GR N + ++ + I +K Sbjct: 272 KVVFSIKDMEKAIIDLGY-------CDAILVDTTGRSSKNMMQISELRAFIEKIK----- 319 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 SV V+ A+T + + +++ +I+TK+D T+ G ++ I+ K P+ F Sbjct: 320 -EKSVHLVISASTKNKDIETIIKGYSILEYENIIITKLDETSIYGSILTILDKGKKPISF 378 Query: 289 LGVGEGIND 297 + G+ + D Sbjct: 379 ITTGQDVPD 387 >gi|258514020|ref|YP_003190242.1| flagellar biosynthesis regulator FlhF [Desulfotomaculum acetoxidans DSM 771] gi|257777725|gb|ACV61619.1| GTP-binding signal recognition particle SRP54 G- domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 438 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 65/249 (26%), Positives = 118/249 (47%), Gaps = 20/249 (8%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111 +L+ +D+ + ++++E+ RY S + + V+ LI+K + L +P D S Sbjct: 180 ILLDTDMDEVLVERLLEDA-NDRYDSGRSDRDEMLKVN-LINK-ITGLIEPAYQDISF-G 235 Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWAD--RTSAD 168 V +G GVGKTT + KL+ + S K + L DT+R A++QLK + + S D Sbjct: 236 KVYAFIGPTGVGKTTTLAKLAAQFSLFYQKDIALITIDTYRIGAVEQLKTYGEIIGVSLD 295 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V + + + K D+++IDTAG NN++ + + + V+ Sbjct: 296 VVMTPEDLHRVIMRH--------KDKDIILIDTAGHPSNNAVYVQELKGFLDVI-----S 342 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 P + VL ATT + ++ + +I TK+D T G ++ I+ IP+Y+ Sbjct: 343 LPLDIFLVLSATTKNKDMFKIIDEFGRKDISKIIFTKIDETESLGAMLNIIYRTNIPIYY 402 Query: 289 LGVGEGIND 297 + G+ + D Sbjct: 403 VTDGQSVPD 411 >gi|322378961|ref|ZP_08053375.1| flagellar biosynthesis regulator FlhF [Helicobacter suis HS1] gi|321148637|gb|EFX43123.1| flagellar biosynthesis regulator FlhF [Helicobacter suis HS1] Length = 443 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS---KKM 135 V+V+R E++ KM+ + + ++ ++++VG GVGKTT + KL+ KM Sbjct: 214 VTVKRYF---REVLRKMIYCRHEGLDLNYKK---ILMLVGPTGVGKTTTLAKLAARYSKM 267 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRT--SADFV--CSEIGSDAAALAYEAFKQAQA 191 D KV + DT+R A++QL +A + S + V + + AL Y Sbjct: 268 LDKKYKVGILTLDTYRIGAVEQLVWYAKKMKISIETVMDTQDFDREMQALEY-------- 319 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 DV++IDT G ++S + + K ++D VL TT L+ + Sbjct: 320 --CDVVLIDTTGHSQHDSKKIENLKKFTENGYKID------TTLVLSLTTKYEDLKDIYQ 371 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 + LI TK+D + G L +V K P+ +L +G+ + Sbjct: 372 AFSPLEIDSLIFTKLDESRGFGNLFSLVYESKKPISYLSIGQEV 415 >gi|300854224|ref|YP_003779208.1| flagellar biosynthesis protein FlhF [Clostridium ljungdahlii DSM 13528] gi|300434339|gb|ADK14106.1| flagellar biosynthesis protein FlhF [Clostridium ljungdahlii DSM 13528] Length = 397 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 15/186 (8%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF- 169 +++++VG GVGKTT I KL+ K+S KV L DT+R A++QLK +AD + F Sbjct: 202 NIVVLVGPTGVGKTTTIAKLAGKLSLIEKKKVGLITIDTYRIGAVEQLKTYADIMNIPFQ 261 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V I A+ DV++IDT GR N + ++ + I D Sbjct: 262 VVFTIKDMGKAI-------ENMSDCDVILIDTTGRSSKNKMQISELRAFI------DKVN 308 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 ++ V+ TT + + + +I+TK+D T+ G ++ I+ K P+ F+ Sbjct: 309 TDNIHLVISCTTKNRDIDVIVEGYKELNYNNVIITKLDETSTYGSILNILQAAKKPISFV 368 Query: 290 GVGEGI 295 G+ + Sbjct: 369 TTGQNV 374 >gi|251797423|ref|YP_003012154.1| GTP-binding signal recognition particle SRP54 G- domain protein [Paenibacillus sp. JDR-2] gi|247545049|gb|ACT02068.1| GTP-binding signal recognition particle SRP54 G- domain protein [Paenibacillus sp. JDR-2] Length = 416 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 112/219 (51%), Gaps = 17/219 (7%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGD 148 EL+ + L P S + S ++ VG GVGKTT I KL+ S G ++ L D Sbjct: 202 ELLLEWLDPYS---HQSISESARIVHFVGPTGVGKTTTIAKLAAGQSIKFGRQIGLITSD 258 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 T+R AA+DQL+ +A+ + V E+ L +AFKQ + + +++ +DTAGR N Sbjct: 259 TYRIAAVDQLRTYANILN---VPMEVVFSPMDLP-KAFKQLEDR--ELIYMDTAGRNFRN 312 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 + ++ + +++ ++ + +VL VL T + V G ++ TK+D Sbjct: 313 ELHVSEVNSLLQSSQQSE-----TVL-VLSLTGKTKDMMAVADNFVKYGVRKVLFTKLDE 366 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDF 306 T+ G ++ + + +++ F+ G+ + +D+ PF A+ + Sbjct: 367 TSVYGSILNLALKNELQPVFVASGQTVPDDIAPFNAERY 405 >gi|257457598|ref|ZP_05622765.1| SRP54-type protein, GTPase domain [Treponema vincentii ATCC 35580] gi|257444984|gb|EEV20060.1| SRP54-type protein, GTPase domain [Treponema vincentii ATCC 35580] Length = 448 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 20/209 (9%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLS----KKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 D + V+L+VG GVGKTT + K++ +K S+ L+V + D +R A Q+K + Sbjct: 222 DDQPKTRVVLLVGPTGVGKTTTLAKIAVQYIRKNSEHPLRVKVITIDNWRIGAAYQMKRY 281 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 + + + + A Y A + +A DV+ IDT GR + I M Sbjct: 282 CELMGIPLMVA--SNPAEVRKYMALYREEA---DVICIDTIGRSPKDR---EKISTMQNY 333 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 L A V + A T N +R++ +AV LI+TK D T+ G L I+ Sbjct: 334 FAELGDDA--EVYLTVCAGTRINDIREIMKEYAVFKYKSLIITKFDETSYIGNLFSIISE 391 Query: 282 HKIPVYFLGVGEGIN------DLEPFVAK 304 IP+ ++ G+ + D+E F+ K Sbjct: 392 TNIPITYITAGQEVPQDFMLADIETFLKK 420 >gi|148266120|ref|YP_001232826.1| GTP-binding signal recognition particle [Geobacter uraniireducens Rf4] gi|146399620|gb|ABQ28253.1| GTP-binding signal recognition particle SRP54, G- domain [Geobacter uraniireducens Rf4] Length = 447 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 14/201 (6%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 ++ +VG GVGKTT I KL+ + + G +V + D FR AI+QLK ++ V Sbjct: 253 RIMAIVGPTGVGKTTTIAKLAAMYALNRGARVAMVTTDNFRVGAIEQLKTYSKIMD---V 309 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 E+ + A L K A D+++IDTAGR + K+ + L+ H Sbjct: 310 PLEVAATAKELETVLAKHADK---DLILIDTAGRSPKDR------EKLEELKVYLESHPA 360 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 + ATT + + +V T L+ TK+D + G ++ V +K P+ + Sbjct: 361 IETYLCISATTRDREMNDIVANFSVLPITRLLFTKLDESESYGCIVNAQVRNKYPLSYFT 420 Query: 291 VGEGI-NDLEPFVAKDFSAVI 310 G+ + D+E A+ + ++ Sbjct: 421 TGQKVPEDIEVATARKLANLV 441 >gi|118581845|ref|YP_903095.1| GTP-binding signal recognition particle [Pelobacter propionicus DSM 2379] gi|118504555|gb|ABL01038.1| GTP-binding signal recognition particle SRP54, G- domain protein [Pelobacter propionicus DSM 2379] Length = 446 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 14/191 (7%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I +VG GVGKTT KL+ + + G KV L D FR AI+QLK ++ Sbjct: 250 PRIIALVGPTGVGKTTTTAKLAAMHAFNRGNKVALITMDIFRVGAIEQLKTYSRIMG--- 306 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + E+ S L K A D++ IDTAGR H ++ K+ + + Sbjct: 307 IPIEVASTPKELESAVEKHAD---CDLIFIDTAGRSHKDT------EKLNEMKQFFADKI 357 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P V L ATT L ++ ++ + ++ TK+D + G +I +++ + V + Sbjct: 358 PMEVFLCLSATTKDRELTEILNCFSIFQISKVVFTKIDESESFGNMINVLMKGNLQVAYF 417 Query: 290 GVGEGI-NDLE 299 G+ + D+E Sbjct: 418 TTGQRVPEDIE 428 >gi|325295405|ref|YP_004281919.1| flagellar biosynthetic protein FlhF [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065853|gb|ADY73860.1| flagellar biosynthetic protein FlhF [Desulfurobacterium thermolithotrophum DSM 11699] Length = 376 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/249 (25%), Positives = 120/249 (48%), Gaps = 18/249 (7%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNWDFSHR 110 LI+ I V + I EEL+ + D+ +++ L ++ + K F +FS + Sbjct: 121 LIKVLIQKGVKKNIAEELVKEACGLDIETEKLDLSTPTLKGALIKGIEKHIEFRGEFSIK 180 Query: 111 P---HVILVVGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 P ++I VG GVGKTT + K+ S+ + + LKV + DTF+ A+ Q + +A + Sbjct: 181 PGEKNIIAFVGPTGVGKTTNLFKIASRFVIEKDLKVGVITTDTFKVGAVQQARTYASILN 240 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 F + +D+ L ++ + +DV+ IDT GR H + +G++ +L ++ Sbjct: 241 IPFF---VVTDSKKLKETV---SKMENLDVIFIDTVGRSHYD---YWRLGEIKAILSAIN 291 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 + ++L + T + A+ V + + TK+D T+ G LI I V +PV Sbjct: 292 LNV--TLLISCNYKTSE-AVEIVNRYRTFFPIDSIFFTKIDETSFPGILINIPVLTGLPV 348 Query: 287 YFLGVGEGI 295 ++ G+ + Sbjct: 349 SYISTGQRV 357 >gi|295696133|ref|YP_003589371.1| flagellar biosynthetic protein FlhF [Bacillus tusciae DSM 2912] gi|295411735|gb|ADG06227.1| flagellar biosynthetic protein FlhF [Bacillus tusciae DSM 2912] Length = 396 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 68/258 (26%), Positives = 115/258 (44%), Gaps = 40/258 (15%) Query: 60 VAVAQKIVEELLTKRYAKDVSVQRVL-------YDVS-------ELIHKMLMP-LSKPFN 104 V +A+ +V + +R A+ ++ Q VL +++S E++ L P + P Sbjct: 144 VHLAEALVAGGMDERRARALAEQAVLSIPDDGSWEISHTVEQLREIVRSRLQPWVGSPM- 202 Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 + VI + G GVGKTT I KL+ + DAG +V L DT+R AA+DQL+ +A Sbjct: 203 ---AAESRVIALAGPTGVGKTTTIAKLAAIETLDAGRRVALITADTYRIAAVDQLRTYAQ 259 Query: 164 RTSAD----FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 + E+ LA + D + +DTAGR + + +M+ Sbjct: 260 IIGIPCFVVYTPEEMRRTVGELA----------EYDRIFVDTAGRNYTQREHALSLREML 309 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 + K P + VL + + G++ R VE VA + TK D T + ++ Sbjct: 310 QAAK---PDETYLVLSL--SGKGRDLYRTVEALREVA-IDKYLFTKADETESLASAVDLL 363 Query: 280 VTHKIPVYFLGVGEGIND 297 + PV ++ G+G+ D Sbjct: 364 LAESRPVAYITTGQGVPD 381 >gi|188588736|ref|YP_001920221.1| flagellar biosynthesis regulator FlhF [Clostridium botulinum E3 str. Alaska E43] gi|188499017|gb|ACD52153.1| flagellar biosynthesis protein FlhF [Clostridium botulinum E3 str. Alaska E43] Length = 403 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 18/189 (9%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 I +VG GVGKTT I KL+ K+S K V L DT+R AI+QLK +A+ + F Sbjct: 210 IALVGPTGVGKTTTIAKLAGKLSLIDKKRVGLITVDTYRIGAIEQLKTYAEIMNIPF--- 266 Query: 173 EIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + + ++A DV++IDT GR N++ ++ + + + P Sbjct: 267 -----KVVITIKEMEEAINAMTDCDVILIDTTGRSSKNTMQISELRAFV------EKANP 315 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 V V+ ATT + + ++ +I+TK+D T G L I+ PV ++ Sbjct: 316 DYVSMVISATTKNRDIVSILNGYSDLSYDNVIITKLDETTVYGSLYNIMKISNKPVKYIT 375 Query: 291 VGEGI-NDL 298 G+ + ND+ Sbjct: 376 TGQNVPNDI 384 >gi|149927787|ref|ZP_01916038.1| flagellar biosynthesis regulator FlhF [Limnobacter sp. MED105] gi|149823409|gb|EDM82640.1| flagellar biosynthesis regulator FlhF [Limnobacter sp. MED105] Length = 444 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 68/258 (26%), Positives = 120/258 (46%), Gaps = 24/258 (9%) Query: 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 R EL + L +S A+ +VE+L D+S +V V +I K L + P N Sbjct: 170 RGELWNQLTQSGFSPLFARTVVEKL-----PADLSDSQVQDWVMNVIKKNLNVV--PANK 222 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D +VG GVGKTT KL+ + + + L D++R A DQL+I+ Sbjct: 223 DIVETGGTFALVGPTGVGKTTTTAKLAARCVVKYGADSLGLITTDSYRIGAQDQLRIYGK 282 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 ++ +D A L + ++ +++IDT G +S + + ++L Sbjct: 283 ILGVQVYTAQTHADLAQL------RNTMQRKRLILIDTVGMGQRDS----RVAEQTKILT 332 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 D H +L L+AT+ L V + G +G I++K+D + GG++ +V+ HK Sbjct: 333 --DSHVKRVLL--LNATSQPETLDDVVRHYKSTGLSGAILSKLDEAIKIGGVLDVVMRHK 388 Query: 284 IPVYFLGVGEGI-NDLEP 300 + ++++ G+ + DL P Sbjct: 389 LALHYIATGQRVPEDLFP 406 >gi|16799764|ref|NP_470032.1| flagellar biosynthesis regulator FlhF [Listeria innocua Clip11262] gi|16413141|emb|CAC95921.1| lin0689 [Listeria innocua Clip11262] Length = 407 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 16/197 (8%) Query: 104 NWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 ++D S HR +I ++G GVGKTT + KL ++ V DTFRS A++Q + +A Sbjct: 200 SFDLSNHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYA 257 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 D+ + + + + A L VD ++IDT GR + ++ I V+ Sbjct: 258 DKLDVELI---VATSPAELEEAVQYMTYVSGVDHILIDTVGRNYLAEESVSEIAAYTNVV 314 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVV 280 H L ++G + + + +A G I+TKMD T R G L ++ Sbjct: 315 --------HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQ 366 Query: 281 THKIPVYFLGVGEGIND 297 +PV ++ G+ I + Sbjct: 367 ETNLPVLYMTDGQNITE 383 >gi|313620090|gb|EFR91597.1| flagellar biosynthesis protein FlhF [Listeria innocua FSL S4-378] Length = 385 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 16/197 (8%) Query: 104 NWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 ++D S HR +I ++G GVGKTT + KL ++ V DTFRS A++Q + +A Sbjct: 200 SFDLSNHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYA 257 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 D+ + + + + A L VD ++IDT GR + ++ I V+ Sbjct: 258 DKLDVELI---VATSPAELEEAVQYMTYVSGVDHILIDTVGRNYLAEESVSEIAAYTNVV 314 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVV 280 H L ++G + + + +A G I+TKMD T R G L ++ Sbjct: 315 --------HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQ 366 Query: 281 THKIPVYFLGVGEGIND 297 +PV ++ G+ I + Sbjct: 367 ETNLPVLYMTDGQNITE 383 >gi|313624923|gb|EFR94831.1| flagellar biosynthesis protein FlhF [Listeria innocua FSL J1-023] Length = 407 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 16/197 (8%) Query: 104 NWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 ++D S HR +I ++G GVGKTT + KL ++ V DTFRS A++Q + +A Sbjct: 200 SFDLSNHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYA 257 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 D+ + + + + A L VD ++IDT GR + ++ I V+ Sbjct: 258 DKLDVELI---VATSPAELEEAVQYMTYVSGVDHILIDTVGRNYLAEESVSEIAAYTNVV 314 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVV 280 H L ++G + + + +A G I+TKMD T R G L ++ Sbjct: 315 --------HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQ 366 Query: 281 THKIPVYFLGVGEGIND 297 +PV ++ G+ I + Sbjct: 367 ETNLPVLYMTDGQNITE 383 >gi|87311167|ref|ZP_01093290.1| flagellar biosynthesis protein FlhF [Blastopirellula marina DSM 3645] gi|87286075|gb|EAQ77986.1| flagellar biosynthesis protein FlhF [Blastopirellula marina DSM 3645] Length = 382 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 116/251 (46%), Gaps = 23/251 (9%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN--WD 106 L D LI +++ +A ++ L ++++ D+ + +H+++ + N D Sbjct: 134 LHDELIAAEVAPQIAAQLAGHL------EEIAAVTHERDLRQRLHQIIAATFRIGNDLED 187 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 P I +VG GVGKTT I KL+ + L+V L DT+R AA+DQL+ +A+ Sbjct: 188 PRRGPLRIALVGPTGVGKTTTIAKLAARAKFTQKLRVGLITIDTYRIAAVDQLQAYAEIM 247 Query: 166 SADF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 V S A+ + A D + IDTAGR +++ + + ++R + Sbjct: 248 DLPMQVVSSPSEMRDAVDHLA-------GCDRIFIDTAGRSPRDAVQLQQLHSVLRAAET 300 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 + +L ATTG +L++ E A T LI TK+D G + ++ + Sbjct: 301 ------DARYLLLSATTGNRSLQEAERRFASIDPTALIATKLDEVETLGAMFNLINRTTL 354 Query: 285 PVYFLGVGEGI 295 P+ ++ G+ + Sbjct: 355 PISYVTHGQDV 365 >gi|322421666|ref|YP_004200889.1| flagellar biosynthetic protein FlhF [Geobacter sp. M18] gi|320128053|gb|ADW15613.1| flagellar biosynthetic protein FlhF [Geobacter sp. M18] Length = 478 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/202 (24%), Positives = 94/202 (46%), Gaps = 14/202 (6%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P ++ VVG GVGKTT I K++ + + + V + D FR A++QLK +A Sbjct: 284 PRIVAVVGPTGVGKTTTIAKIAAMYALNRRVSVAMVTMDNFRVGAVEQLKTYAKIMDLPL 343 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 E+ ++ L+ + + D+++IDTAGR ++ + + + +D Sbjct: 344 ---EVAGNSQELSKALARHSDK---DLILIDTAGRSPKDADRLDELKGYLETQTGID--- 394 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 V L ATT + Q+ T L+ TK+D + G ++ + HK P+ + Sbjct: 395 ---VYLCLSATTRSREIDQIIDTFGTLPVTKLLFTKLDESRSFGCIVDTCLKHKFPLSYF 451 Query: 290 GVGEGI-NDLEPFVAKDFSAVI 310 G+ + D+E ++ +A++ Sbjct: 452 STGQKVPEDIEVATSRKLAAMV 473 >gi|315453789|ref|YP_004074059.1| flagellar biosynthesis protein [Helicobacter felis ATCC 49179] gi|315132841|emb|CBY83469.1| flagellar biosynthesis protein [Helicobacter felis ATCC 49179] Length = 447 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 102/229 (44%), Gaps = 39/229 (17%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-- 136 V+V+R E++ KM+ + N D +++ ++++VG GVGKTT + KL+ + S Sbjct: 218 VTVKRYF---REVLRKMI--YCRHENLDPNYK-KILMLVGPTGVGKTTTLAKLAARYSKL 271 Query: 137 -DAGLKVMLAAGDTFRSAAIDQLKIWADRT---------SADFVCSEIGSDAAALAYEAF 186 D KV + DT+R A++QL +A + S DF + AL Y Sbjct: 272 LDRKYKVGILTLDTYRIGAVEQLNWYAKKMKISIETVMDSEDFT-----KEMKALEY--- 323 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 DV++IDT G + + + K + ++D VL TT L Sbjct: 324 -------CDVVLIDTTGHSQRDKKKIEALKKFTQNGYKID------TTLVLSLTTKYEDL 370 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 + + + LI TK+D + G L +V K P+ +L +G+ + Sbjct: 371 KDIYNAFSPLDIDSLIFTKLDESQGFGNLFSLVYESKKPISYLCIGQEV 419 >gi|109947671|ref|YP_664899.1| flagellar biosynthesis regulator FlhF [Helicobacter acinonychis str. Sheeba] gi|109714892|emb|CAJ99900.1| flagellar biosynthesis protein [Helicobacter acinonychis str. Sheeba] Length = 457 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 26/213 (12%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS---KKMSDAGLKVMLAA 146 E++ KM+ L +P + + + ++++VG GVGKTT + KL+ +M KV + Sbjct: 236 EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRMLTKKYKVGIIT 292 Query: 147 GDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 D +R A++QL +A++ A + + AL Y D +++DT Sbjct: 293 LDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY----------CDFILVDTT 342 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 G + +AG+ K I +D V VL TT ++ + V G LI Sbjct: 343 GHSQYDKEKIAGLKKFIDGGYNID------VSLVLSVTTKYEDMKDIYDSFGVLGIDTLI 396 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 TK+D + G L +V + P+ +L +G+ + Sbjct: 397 FTKLDESRGLGNLFSLVHESQKPISYLSIGQEV 429 >gi|294500919|ref|YP_003564619.1| flagellar biosynthetic protein FlhF [Bacillus megaterium QM B1551] gi|294350856|gb|ADE71185.1| flagellar biosynthetic protein FlhF [Bacillus megaterium QM B1551] Length = 365 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 89/195 (45%), Gaps = 18/195 (9%) Query: 116 VVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 VVG GVGKTT + KL+ K + + K+ DT+R +AI+QLK +A +A Sbjct: 174 VVGPTGVGKTTTLAKLAAKCVLEHNQKIAFITTDTYRISAIEQLKTYASILNAPLTICYN 233 Query: 175 GSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 G+D FK+A + + DV+ IDTAGR + + K+I + L Sbjct: 234 GAD--------FKKALLETEAYDVIFIDTAGRNFLEQQYVNDLKKIITFQEDL------Q 279 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 VL T+ + ++ V A LI TK D T G L+ ++ + F G Sbjct: 280 TFLVLALTSKVSDMKAVYERFASLPVDHLIFTKQDETTHKGSLLNMLYHYGKRAAFTTNG 339 Query: 293 EGI-NDLEPFVAKDF 306 + + D+ F K+F Sbjct: 340 QDVPEDVSAFKIKEF 354 >gi|167464147|ref|ZP_02329236.1| flagellar biosynthesis regulator FlhF [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382373|ref|ZP_08056280.1| flagellar biosynthesis regulator FlhF-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153726|gb|EFX46101.1| flagellar biosynthesis regulator FlhF-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 460 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 107/242 (44%), Gaps = 25/242 (10%) Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-----HVILVVGV 119 K +EELL + + Q + EL + L FN D S P +I VG Sbjct: 214 KWIEELLNQADSAAAGAQ-TTWTPDELRQSVASQLKDWFNRDGSPSPVSRTAKMIHFVGP 272 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAG----DTFRSAAIDQLKIWADRTSADFVCSEIG 175 GVGKTT I KL+ ++ LK AG DT+R +A++QL+ +A+ Sbjct: 273 TGVGKTTTIAKLA---AEQVLKHHKKAGFITSDTYRISAVEQLRTYANILGVPLEVVFSP 329 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 D A+EA + VDV+ +DTAGR + ++ + +++ + + Sbjct: 330 QD-LPRAFEALQD-----VDVIFMDTAGRNFRKELAVSELNALLQSCGETETYL------ 377 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 VL TT +R + G ++ TKMD TA G L+ + ++P +L G+ + Sbjct: 378 VLSLTTKYEDIRVITENFIKFGVDKVLFTKMDETATYGTLVNLKRDFQLPFSYLTDGQNV 437 Query: 296 ND 297 D Sbjct: 438 PD 439 >gi|328467250|gb|EGF38330.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes 1816] Length = 352 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 15/192 (7%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 +HR +I ++G GVGKTT + KL ++ V DTFRS A++Q + +AD+ Sbjct: 150 NHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV 207 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + + + + A L VD ++IDT GR + ++ I V+ Sbjct: 208 ELI---VATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVV----- 259 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVVTHKIP 285 H L ++G + + + +A G I+TKMD T R G L ++ +P Sbjct: 260 ---HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLP 316 Query: 286 VYFLGVGEGIND 297 V ++ G+ I + Sbjct: 317 VLYMTDGQNITE 328 >gi|317181754|dbj|BAJ59538.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori F57] Length = 458 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 108/235 (45%), Gaps = 30/235 (12%) Query: 69 ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 EL+ R ++ V+++R E++ KM+ L +P + + + ++++VG GVGKTT Sbjct: 218 ELMPLRMRENSVTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTT 271 Query: 128 IGKLSKKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAA 180 + KL+ + S KV + D +R A++QL +A++ A + + A Sbjct: 272 LAKLAARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEA 331 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 L Y D +++DT G + +AG+ + I +D V VL T Sbjct: 332 LEY----------CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVT 375 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 T ++ + V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 376 TKYEDMKDIYDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430 >gi|47095246|ref|ZP_00232857.1| flagellar biosynthesis protein FlhF, putative [Listeria monocytogenes str. 1/2a F6854] gi|224498763|ref|ZP_03667112.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes Finland 1988] gi|254900083|ref|ZP_05260007.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes J0161] gi|254911364|ref|ZP_05261376.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes J2818] gi|254935691|ref|ZP_05267388.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes F6900] gi|47016317|gb|EAL07239.1| flagellar biosynthesis protein FlhF, putative [Listeria monocytogenes str. 1/2a F6854] gi|258608273|gb|EEW20881.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes F6900] gi|293589300|gb|EFF97634.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes J2818] Length = 407 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 16/197 (8%) Query: 104 NWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 ++D S HR +I ++G GVGKTT + KL ++ V DTFRS A++Q + +A Sbjct: 200 SFDLSGHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYA 257 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 D+ + + + + A L VD ++IDT GR + ++ I V+ Sbjct: 258 DKLDVELI---VATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVV 314 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVV 280 H L ++G + + + +A G I+TKMD T R G L ++ Sbjct: 315 --------HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQ 366 Query: 281 THKIPVYFLGVGEGIND 297 +PV ++ G+ I + Sbjct: 367 ETNLPVLYMTDGQNITE 383 >gi|317180692|dbj|BAJ58478.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori F32] Length = 458 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 108/235 (45%), Gaps = 30/235 (12%) Query: 69 ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 EL+ R ++ V+++R E++ KM+ L +P + + + ++++VG GVGKTT Sbjct: 218 ELMPLRMRENSVTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTT 271 Query: 128 IGKLSKKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAA 180 + KL+ + S KV + D +R A++QL +A++ A + + A Sbjct: 272 LAKLAARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEA 331 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 L Y D +++DT G + +AG+ + I +D V VL T Sbjct: 332 LEY----------CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVT 375 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 T ++ + V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 376 TKYEDMKDIYDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430 >gi|308184216|ref|YP_003928349.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori SJM180] gi|308060136|gb|ADO02032.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori SJM180] Length = 458 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137 V+++R E++ KM+ L +P + + + ++++VG GVGKTT + KL+ + S Sbjct: 229 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 282 Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191 KV + D +R A++QL +A++ A + + AL Y Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 334 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +++DT G + +AG+ + I +D V VL TT ++ + Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430 >gi|46906932|ref|YP_013321.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes serotype 4b str. F2365] gi|47091644|ref|ZP_00229440.1| flagellar biosynthesis protein FlhF, putative [Listeria monocytogenes str. 4b H7858] gi|254824039|ref|ZP_05229040.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL J1-194] gi|254853115|ref|ZP_05242463.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL R2-503] gi|254932039|ref|ZP_05265398.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes HPB2262] gi|254992438|ref|ZP_05274628.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL J2-064] gi|255521622|ref|ZP_05388859.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL J1-175] gi|300764492|ref|ZP_07074485.1| flagellar biosynthesis protein FlhF [Listeria monocytogenes FSL N1-017] gi|46880198|gb|AAT03498.1| putative flagellar biosynthesis protein FlhF [Listeria monocytogenes serotype 4b str. F2365] gi|47019963|gb|EAL10700.1| flagellar biosynthesis protein FlhF, putative [Listeria monocytogenes str. 4b H7858] gi|258606465|gb|EEW19073.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL R2-503] gi|293583592|gb|EFF95624.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes HPB2262] gi|293593268|gb|EFG01029.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL J1-194] gi|300514846|gb|EFK41900.1| flagellar biosynthesis protein FlhF [Listeria monocytogenes FSL N1-017] gi|332311106|gb|EGJ24201.1| Flagellar biosynthesis regulator FlhF [Listeria monocytogenes str. Scott A] Length = 407 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 15/192 (7%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 +HR +I ++G GVGKTT + KL ++ V DTFRS A++Q + +AD+ Sbjct: 205 NHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV 262 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + + + + A L VD ++IDT GR + ++ I V+ Sbjct: 263 ELI---VATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVV----- 314 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVVTHKIP 285 H L ++G + + + +A G I+TKMD T R G L ++ +P Sbjct: 315 ---HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLP 371 Query: 286 VYFLGVGEGIND 297 V ++ G+ I + Sbjct: 372 VLYMTDGQNITE 383 >gi|16802723|ref|NP_464208.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes EGD-e] gi|224502014|ref|ZP_03670321.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL R2-561] gi|254829338|ref|ZP_05234025.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL N3-165] gi|254830328|ref|ZP_05234983.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes 10403S] gi|284801011|ref|YP_003412876.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes 08-5578] gi|284994153|ref|YP_003415921.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes 08-5923] gi|16410070|emb|CAC98759.1| lmo0681 [Listeria monocytogenes EGD-e] gi|258601750|gb|EEW15075.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL N3-165] gi|284056573|gb|ADB67514.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes 08-5578] gi|284059620|gb|ADB70559.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes 08-5923] Length = 407 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 16/197 (8%) Query: 104 NWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 ++D S HR +I ++G GVGKTT + KL ++ V DTFRS A++Q + +A Sbjct: 200 SFDLSGHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYA 257 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 D+ + + + + A L VD ++IDT GR + ++ I V+ Sbjct: 258 DKLDVELI---VATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVV 314 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVV 280 H L ++G + + + +A G I+TKMD T R G L ++ Sbjct: 315 --------HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQ 366 Query: 281 THKIPVYFLGVGEGIND 297 +PV ++ G+ I + Sbjct: 367 ETNLPVLYMTDGQNITE 383 >gi|261837845|gb|ACX97611.1| flagellar biosynthesis protein [Helicobacter pylori 51] Length = 459 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137 V+++R E++ KM+ L +P + + + ++++VG GVGKTT + KL+ + S Sbjct: 230 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 283 Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191 KV + D +R A++QL +A++ A + + AL Y Sbjct: 284 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 335 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +++DT G + +AG+ + I +D V VL TT ++ + Sbjct: 336 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 387 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 388 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 431 >gi|217965221|ref|YP_002350899.1| flagellar biosynthetic protein FlhF [Listeria monocytogenes HCC23] gi|217334491|gb|ACK40285.1| flagellar biosynthetic protein FlhF [Listeria monocytogenes HCC23] gi|307570220|emb|CAR83399.1| flagellar biosynthesis protein (flagella-associated GTP-binding protein), putative [Listeria monocytogenes L99] Length = 407 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 15/192 (7%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 +HR +I ++G GVGKTT + KL ++ V DTFRS A++Q + +AD+ Sbjct: 205 NHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV 262 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + + + + A L VD ++IDT GR + ++ I V+ Sbjct: 263 ELI---VATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVV----- 314 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVVTHKIP 285 H L ++G + + + +A G I+TKMD T R G L ++ +P Sbjct: 315 ---HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLP 371 Query: 286 VYFLGVGEGIND 297 V ++ G+ I + Sbjct: 372 VLYMTDGQNITE 383 >gi|307718619|ref|YP_003874151.1| flagellar-associated GTP-binding protein [Spirochaeta thermophila DSM 6192] gi|306532344|gb|ADN01878.1| flagellar-associated GTP-binding protein [Spirochaeta thermophila DSM 6192] gi|315186368|gb|EFU20128.1| flagellar biosynthetic protein FlhF [Spirochaeta thermophila DSM 6578] Length = 385 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 32/206 (15%) Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK------VMLAAGDTFRSAAID 156 + F+ RP + ++VG GVGKTT I KL+ M GL+ V + D +R AA Sbjct: 174 YPLKFTRRPEIFILVGPTGVGKTTTIAKLA-AMYGLGLEDNIRYDVRIITIDNYRIAARQ 232 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA--KKVDVLIIDTAGRLHNNSILMAG 214 Q++ +A+ C E +YE ++ + VD++ +DT G+ + +A Sbjct: 233 QIETYANIMGIPVACVE--------SYEELERQVRLFQDVDIIFVDTIGKSPRDYRKLAD 284 Query: 215 IGKMIRVL-KRLDPHAPHSVLQVLDATTGQ----NALRQVEMFHAVAGTTGLIMTKMDGT 269 + M+ R H L ATT L+Q E F+ T +++TK+D T Sbjct: 285 MKDMLEACGSRAQTHL------ALSATTKTADIYTVLQQFEPFNY----TSVVLTKLDET 334 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGI 295 G +I ++ P+ F+ G+ + Sbjct: 335 TTVGNIISVLEEKGKPISFITNGQAV 360 >gi|308182582|ref|YP_003926709.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori PeCan4] gi|308064767|gb|ADO06659.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori PeCan4] Length = 458 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137 V+++R E++ KM+ L +P + + + ++++VG GVGKTT + KL+ + S Sbjct: 229 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 282 Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191 KV + D +R A++QL +A++ A + + AL Y Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 334 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +++DT G + +AG+ + I +D V VL TT ++ + Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430 >gi|217033294|ref|ZP_03438725.1| hypothetical protein HP9810_9g47 [Helicobacter pylori 98-10] gi|216944235|gb|EEC23660.1| hypothetical protein HP9810_9g47 [Helicobacter pylori 98-10] Length = 458 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137 V+++R E++ KM+ L +P + + + ++++VG GVGKTT + KL+ + S Sbjct: 229 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 282 Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191 KV + D +R A++QL +A++ A + + AL Y Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDTKDFAKEIEALEY-------- 334 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +++DT G + +AG+ + I +D V VL TT ++ + Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430 >gi|308061764|gb|ADO03652.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori Cuz20] Length = 458 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137 V+++R E++ KM+ L +P + + + ++++VG GVGKTT + KL+ + S Sbjct: 229 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 282 Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191 KV + D +R A++QL +A++ A + + AL Y Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 334 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +++DT G + +AG+ + I +D V VL TT ++ + Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430 >gi|317179194|dbj|BAJ56982.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori F30] Length = 458 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137 V+++R E++ KM+ L +P + + + ++++VG GVGKTT + KL+ + S Sbjct: 229 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 282 Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191 KV + D +R A++QL +A++ A + + AL Y Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 334 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +++DT G + +AG+ + I +D V VL TT ++ + Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430 >gi|317177224|dbj|BAJ55013.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori F16] Length = 458 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137 V+++R E++ KM+ L +P + + + ++++VG GVGKTT + KL+ + S Sbjct: 229 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 282 Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191 KV + D +R A++QL +A++ A + + AL Y Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDTKDFAKEIEALEY-------- 334 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +++DT G + +AG+ + I +D V VL TT ++ + Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430 >gi|213422086|ref|ZP_03355152.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 97 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 6/101 (5%) Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 DF S++G + A K+A+ K DVL++DTAGRLH + +M I ++ +K Sbjct: 3 DFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK---- 58 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 P L V+DA TGQ+A + F+ TG+++TK+DG Sbjct: 59 --PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDG 97 >gi|332673259|gb|AEE70076.1| flagellar biosynthesis protein FlhF [Helicobacter pylori 83] Length = 458 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137 V+++R E++ KM+ L +P + + + ++++VG GVGKTT + KL+ + S Sbjct: 229 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 282 Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191 KV + D +R A++QL +A++ A + + AL Y Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 334 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +++DT G + +AG+ + I +D V VL TT ++ + Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430 >gi|315586404|gb|ADU40785.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori 35A] Length = 458 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137 V+++R E++ KM+ L +P + + + ++++VG GVGKTT + KL+ + S Sbjct: 229 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 282 Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191 KV + D +R A++QL +A++ A + + AL Y Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDTKDFAKEIEALEY-------- 334 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +++DT G + +AG+ + I +D V VL TT ++ + Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430 >gi|108562837|ref|YP_627153.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori HPAG1] gi|107836610|gb|ABF84479.1| GTP-binding flagellar biosynthesis protein [Helicobacter pylori HPAG1] Length = 459 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137 V+++R E++ KM+ L +P + + + ++++VG GVGKTT + KL+ + S Sbjct: 230 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 283 Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191 KV + D +R A++QL +A++ A + + AL Y Sbjct: 284 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 335 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +++DT G + +AG+ + I +D V VL TT ++ + Sbjct: 336 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 387 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 388 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 431 >gi|210134607|ref|YP_002301046.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori P12] gi|210132575|gb|ACJ07566.1| GTP-binding flagellar biosynthesis protein [Helicobacter pylori P12] Length = 458 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137 V+++R E++ KM+ L +P + + + ++++VG GVGKTT + KL+ + S Sbjct: 229 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 282 Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191 KV + D +R A++QL +A++ A + + AL Y Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 334 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +++DT G + +AG+ + I +D V VL TT ++ + Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430 >gi|317009057|gb|ADU79637.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori India7] Length = 457 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137 V+++R E++ KM+ L +P + + + ++++VG GVGKTT + KL+ + S Sbjct: 228 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 281 Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191 KV + D +R A++QL +A++ A + + AL Y Sbjct: 282 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 333 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +++DT G + +AG+ + I +D V VL TT ++ + Sbjct: 334 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 385 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 386 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 429 >gi|308063273|gb|ADO05160.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori Sat464] Length = 458 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137 V+++R E++ KM+ L +P + + + ++++VG GVGKTT + KL+ + S Sbjct: 229 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 282 Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191 KV + D +R A++QL +A++ A + + AL Y Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 334 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +++DT G + +AG+ + I +D V VL TT ++ + Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430 >gi|317012251|gb|ADU82859.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori Lithuania75] Length = 458 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137 V+++R E++ KM+ L +P + + + ++++VG GVGKTT + KL+ + S Sbjct: 229 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 282 Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191 KV + D +R A++QL +A++ A + + AL Y Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 334 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +++DT G + +AG+ + I +D V VL TT ++ + Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430 >gi|222053728|ref|YP_002536090.1| GTP-binding signal recognition particle SRP54 G- domain protein [Geobacter sp. FRC-32] gi|221563017|gb|ACM18989.1| GTP-binding signal recognition particle SRP54 G- domain protein [Geobacter sp. FRC-32] Length = 450 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/202 (24%), Positives = 96/202 (47%), Gaps = 14/202 (6%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P ++ VG GVGKTT I KL+ + + G +V + D FR A++QLK ++ Sbjct: 255 PRIMATVGPTGVGKTTTIAKLAAMYALNRGARVAMVTTDNFRVGAVEQLKTYSKIMDVPL 314 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 E+ + A L EA A K D+++IDTAGR + + + + ++ + Sbjct: 315 ---EVAATAKEL--EAVLAKHADK-DLILIDTAGRSPKDREKLEELKVYLESCPGIETYL 368 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 + ATT + ++ +++ T L+ TK+D + G ++ V ++ P+ + Sbjct: 369 ------CISATTRDREMNEIVAQYSLLPITRLLFTKLDESESYGCIVNAQVRNRFPLSYF 422 Query: 290 GVGEGI-NDLEPFVAKDFSAVI 310 G+ + D+E A+ + ++ Sbjct: 423 TTGQKVPEDIEVATARKLANLV 444 >gi|208434358|ref|YP_002266024.1| GTP-binding flagellar biosynthesis protein [Helicobacter pylori G27] gi|208432287|gb|ACI27158.1| GTP-binding flagellar biosynthesis protein [Helicobacter pylori G27] Length = 456 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137 V+++R E++ KM+ L +P + + + ++++VG GVGKTT + KL+ + S Sbjct: 227 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 280 Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191 KV + D +R A++QL +A++ A + + AL Y Sbjct: 281 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 332 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +++DT G + +AG+ + I +D V VL TT ++ + Sbjct: 333 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 384 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 385 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 428 >gi|188527221|ref|YP_001909908.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori Shi470] gi|188143461|gb|ACD47878.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori Shi470] Length = 459 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137 V+++R E++ KM+ L +P + + + ++++VG GVGKTT + KL+ + S Sbjct: 230 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 283 Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191 KV + D +R A++QL +A++ A + + AL Y Sbjct: 284 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 335 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +++DT G + +AG+ + I +D V VL TT ++ + Sbjct: 336 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 387 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 388 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 431 >gi|183220347|ref|YP_001838343.1| flagellar biosynthesis regulator FlhF [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910464|ref|YP_001962019.1| flagellar biosynthesis regulator FlhF [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775140|gb|ABZ93441.1| Endoflagellar biosynthesis protein, GTP-binding [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778769|gb|ABZ97067.1| Flagellar biosynthesis protein FlhF (Flagella associated GTP-binding protein) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 451 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/202 (31%), Positives = 92/202 (45%), Gaps = 23/202 (11%) Query: 107 FSHRPH----VILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIW 161 FS P V+ VG G GKTT I KL+ K S G KV L D +R AAIDQLK + Sbjct: 234 FSGTPRGKRKVVFFVGPTGSGKTTSIAKLAAKYSLHMGKKVSLYTTDNYRIAAIDQLKFY 293 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIR 220 AD F AA +K+ + +++++DTAG H S + + + Sbjct: 294 ADAMGLPFY--------AAKDLRKWKETILRDGSELILVDTAGYSHRKSENLEKLQEFYE 345 Query: 221 VLKRLDPHAPHSVLQVLDATTGQ-NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 V D H + VL +T + NAL + +V G +++TK+D G ++ + Sbjct: 346 VFGEKD-HI--ETILVLSSTVAKDNALAVTNAYESV-GYKRILLTKLDEAEFLGSVVELA 401 Query: 280 VTHKIPVYFLGVGEGINDLEPF 301 T FL VG+ + PF Sbjct: 402 DTIHREFAFLSVGQDV----PF 419 >gi|289433959|ref|YP_003463831.1| flagellar biosynthesis protein FlhF, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170203|emb|CBH26743.1| flagellar biosynthesis protein FlhF, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 407 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 15/192 (7%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 +HR +I ++G GVGKTT + KL ++ V DTFRS A++Q + +AD+ Sbjct: 205 NHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV 262 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + + + + A L VD ++IDT GR + + I V+ Sbjct: 263 ELI---VATSPAELEEAVQYMTYVSGVDHILIDTVGRNYLAEESVNEIAAYTNVV----- 314 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVVTHKIP 285 H L ++G + + + +A G I+TKMD T R G L ++ +P Sbjct: 315 ---HPDLTCFTFSSGMKSADVMSILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLP 371 Query: 286 VYFLGVGEGIND 297 V ++ G+ I + Sbjct: 372 VLYMTDGQNITE 383 >gi|254779104|ref|YP_003057209.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori B38] gi|254001015|emb|CAX28959.1| Flagellar biosynthesis protein FlhF (Flagella-associated GTP-binding protein) [Helicobacter pylori B38] Length = 457 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137 V+++R E++ KM+ L +P + + + ++++VG GVGKTT + KL+ + S Sbjct: 228 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 281 Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191 KV + D +R A++QL +A++ A + + AL Y Sbjct: 282 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 333 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +++DT G + +AG+ + I +D V VL TT ++ + Sbjct: 334 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 385 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 386 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 429 >gi|297379633|gb|ADI34520.1| Flagellar biosynthesis protein flhF [Helicobacter pylori v225d] Length = 458 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137 V+++R E++ KM+ L +P + + + ++++VG GVGKTT + KL+ + S Sbjct: 229 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 282 Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191 KV + D +R A++QL +A++ A + + AL Y Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 334 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +++DT G + +AG+ + I +D V VL TT ++ + Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430 >gi|315301914|ref|ZP_07872925.1| flagellar biosynthesis protein FlhF [Listeria ivanovii FSL F6-596] gi|313629710|gb|EFR97832.1| flagellar biosynthesis protein FlhF [Listeria ivanovii FSL F6-596] Length = 407 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 15/192 (7%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 +HR +I ++G GVGKTT + KL ++ V DTFRS A++Q + +AD+ Sbjct: 205 NHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV 262 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + + + + A L VD ++IDT GR + + I V+ Sbjct: 263 ELI---VATSPAELEEAVQYMTYVSGVDHILIDTVGRNYLAEESVNEIAAYTNVV----- 314 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVVTHKIP 285 H L ++G + + + +A G I+TKMD T R G L ++ +P Sbjct: 315 ---HPDLTCFTFSSGMKSADVMSILPKLAEIPMDGFIITKMDETTRIGDLYTVMQETNLP 371 Query: 286 VYFLGVGEGIND 297 V ++ G+ I + Sbjct: 372 VLYMTDGQNITE 383 >gi|288553044|ref|YP_003424979.1| flagellar biosynthesis regulator FlhF [Bacillus pseudofirmus OF4] gi|288544204|gb|ADC48087.1| flagellar biosynthesis regulator FlhF [Bacillus pseudofirmus OF4] Length = 386 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 17/188 (9%) Query: 113 VILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 +I +VG GVGKTT I K++ + + KV L DT+R AA++QLK +A + Sbjct: 192 IINIVGPTGVGKTTTIAKIAAECVLKQQKKVALITTDTYRIAAVEQLKTYAKILNIPI-- 249 Query: 172 SEIGSDAAALAYEAFKQAQ--AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 A + E FK+A+ K DV+++D+AGR N + + + K+ +D Sbjct: 250 ------EVAYSIEDFKKAKDLYKHFDVILVDSAGRNFRNKLYVEELSKV------MDFTE 297 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 L VL T+ ++Q+ ++ +I TK D T+ G I + + + ++ Sbjct: 298 EAETLLVLALTSKYEDMKQIIAQFSLLPIKQVIFTKQDETSSYGAYINVPLEFGLGAAYI 357 Query: 290 GVGEGIND 297 G+ + D Sbjct: 358 TNGQNVPD 365 >gi|261839260|gb|ACX99025.1| hypothetical protein HPKB_0417 [Helicobacter pylori 52] Length = 435 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137 V+++R E++ KM+ L +P + + + ++++VG GVGKTT + KL+ + S Sbjct: 206 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 259 Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191 KV + D +R A++QL +A++ A + + AL Y Sbjct: 260 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 311 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +++DT G + +AG+ + I +D V VL TT ++ + Sbjct: 312 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 363 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V G LI TK+D + G L +V + P+ +L +G+ + Sbjct: 364 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSIGQEV 407 >gi|317010687|gb|ADU84434.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori SouthAfrica7] Length = 457 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137 V+++R E++ KM+ L +P + + + ++++VG GVGKTT + KL+ + S Sbjct: 228 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 281 Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191 KV + D +R A++QL +A++ A + + AL Y Sbjct: 282 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 333 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +++DT G + +AG+ + I +D V VL TT ++ + Sbjct: 334 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 385 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V G LI TK+D + G L +V + P+ +L +G+ + Sbjct: 386 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSIGQEV 429 >gi|325995699|gb|ADZ51104.1| Flagellar biosynthesis protein [Helicobacter pylori 2018] Length = 455 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 108/235 (45%), Gaps = 30/235 (12%) Query: 69 ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 EL+ R ++ V+++R E++ KM+ L +P + + + ++++VG GVGKTT Sbjct: 215 ELMPLRMRENSVTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTT 268 Query: 128 IGKLSKKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAA 180 + KL+ + S KV + D +R A++QL +A++ A + + A Sbjct: 269 LAKLAARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEA 328 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 L Y D +++DT G + +AG+ + I +D V VL T Sbjct: 329 LEY----------CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVT 372 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 T ++ + V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 373 TKYEDMKDIYDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 427 >gi|116872070|ref|YP_848851.1| flagellar biosynthesis regulator FlhF [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740948|emb|CAK20068.1| flagellar biosynthesis protein FlhF, putative [Listeria welshimeri serovar 6b str. SLCC5334] Length = 407 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 15/192 (7%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 +HR +I ++G GVGKTT + KL ++ V DTFRS A++Q + +AD+ Sbjct: 205 NHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV 262 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + + + + A L VD ++IDT GR + + I V+ Sbjct: 263 ELI---VATSPAELEEAVQYMTYVSGVDHILIDTVGRNYLAEESVNEIAAYTNVV----- 314 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVVTHKIP 285 H L ++G + + + +A G I+TKMD T R G L ++ +P Sbjct: 315 ---HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLP 371 Query: 286 VYFLGVGEGIND 297 V ++ G+ I + Sbjct: 372 VLYMTDGQNITE 383 >gi|317013855|gb|ADU81291.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori Gambia94/24] Length = 456 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137 V+++R E++ KM+ L +P + + + ++++VG GVGKTT + KL+ + S Sbjct: 227 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 280 Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191 KV + D +R A++QL +A++ A + + AL Y Sbjct: 281 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 332 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +++DT G + +AG+ + I +D V VL TT ++ + Sbjct: 333 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 384 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V G LI TK+D + G L +V + P+ +L +G+ + Sbjct: 385 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSIGQEV 428 >gi|207091835|ref|ZP_03239622.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori HPKX_438_AG0C1] Length = 455 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137 V+++R E++ KM+ L +P + + + ++++VG GVGKTT + KL+ + S Sbjct: 226 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 279 Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC----SEIGSDAAALAYEAFKQAQA 191 KV + D +R A++QL +A++ + + AL Y Sbjct: 280 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDIKDFAKEIEALEY-------- 331 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +++DT G + +AG+ + I +D V VL TT ++ + Sbjct: 332 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 383 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 384 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 427 >gi|15645649|ref|NP_207825.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori 26695] gi|3913654|sp|O25679|FLHF_HELPY RecName: Full=Flagellar biosynthesis protein flhF; AltName: Full=Flagella-associated GTP-binding protein gi|2314179|gb|AAD08078.1| flagellar biosynthesis protein (flhF) [Helicobacter pylori 26695] Length = 459 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137 V+++R E++ KM++ + N + ++++VG GVGKTT + KL+ + S Sbjct: 230 VTIKRYF---REVLRKMILCCPEDLNL---RQKRILMLVGPTGVGKTTTLAKLAARYSRM 283 Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191 KV + D +R A++QL +A++ A + + AL Y Sbjct: 284 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 335 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +++DT G + +AG+ + I +D V VL TT ++ + Sbjct: 336 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 387 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 388 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 431 >gi|217031642|ref|ZP_03437147.1| hypothetical protein HPB128_21g200 [Helicobacter pylori B128] gi|298736648|ref|YP_003729174.1| flagellar biosynthesis protein FlhF [Helicobacter pylori B8] gi|216946842|gb|EEC25438.1| hypothetical protein HPB128_21g200 [Helicobacter pylori B128] gi|298355838|emb|CBI66710.1| flagellar biosynthesis protein FlhF [Helicobacter pylori B8] Length = 458 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137 V+++R E++ KM++ + N + ++++VG GVGKTT + KL+ + S Sbjct: 229 VTIKRYF---REVLRKMILCCPEDLNL---RQKRILMLVGPTGVGKTTTLAKLAARYSRM 282 Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191 KV + D +R A++QL +A++ A + + AL Y Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 334 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +++DT G + +AG+ + I +D V VL TT ++ + Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430 >gi|313634393|gb|EFS00982.1| flagellar biosynthesis protein FlhF [Listeria seeligeri FSL N1-067] gi|313639082|gb|EFS04062.1| flagellar biosynthesis protein FlhF [Listeria seeligeri FSL S4-171] Length = 260 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 15/192 (7%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 +HR +I ++G GVGKTT + KL ++ V DTFRS A++Q + +AD+ Sbjct: 58 NHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV 115 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + + + + A L VD ++IDT GR + + I V+ Sbjct: 116 ELI---VATSPAELEEAVQYMTYVSGVDHILIDTVGRNYLAEESVNEIAAYTNVV----- 167 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVVTHKIP 285 H L ++G + + + +A G I+TKMD T R G L ++ +P Sbjct: 168 ---HPDLTCFTFSSGMKSADVMSILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLP 224 Query: 286 VYFLGVGEGIND 297 V ++ G+ I + Sbjct: 225 VLYMTDGQNITE 236 >gi|307637108|gb|ADN79558.1| flagellar biosynthesis protein [Helicobacter pylori 908] gi|325997295|gb|ADZ49503.1| Flagellar biosynthesis protein [Helicobacter pylori 2017] Length = 455 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 108/235 (45%), Gaps = 30/235 (12%) Query: 69 ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 EL+ R ++ V+++R E++ KM+ L +P + + + ++++VG GVGKTT Sbjct: 215 ELMPLRMRENSVTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTT 268 Query: 128 IGKLSKKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAA 180 + KL+ + S KV + D +R A++QL +A++ A + + A Sbjct: 269 LAKLAARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEA 328 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 L Y D +++DT G + +AG+ + I +D V VL T Sbjct: 329 LEY----------CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVT 372 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 T ++ + V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 373 TKYEDMKDIYDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 427 >gi|302389681|ref|YP_003825502.1| flagellar biosynthetic protein FlhF [Thermosediminibacter oceani DSM 16646] gi|302200309|gb|ADL07879.1| flagellar biosynthetic protein FlhF [Thermosediminibacter oceani DSM 16646] Length = 374 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 90/202 (44%), Gaps = 20/202 (9%) Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQL 158 ++P + P I+ VG GVGKTT I KL+ + + G KV L DT+R A++QL Sbjct: 169 TEPIKF-LESEPSKIVFVGPTGVGKTTTIAKLAAFYTLNQGKKVALVTADTYRVGAVEQL 227 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEA---FKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 K + D EI + EA K+ D+++IDT G N + + I Sbjct: 228 KTYGD-------LLEIPVEVIFEPKEAPILLKKLSG--YDLILIDTMGTSPRNKMQIKKI 278 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 +I +K + H V+ ATT + ++ + LI TK+D T G + Sbjct: 279 KGLIENIKPTETH------MVISATTRTGDIYEILENYKEINYQKLIFTKLDETRTYGLI 332 Query: 276 IPIVVTHKIPVYFLGVGEGIND 297 + + + +L VG+ + D Sbjct: 333 LNAIYSTNCSPSYLTVGQNVPD 354 >gi|157099212|gb|ABO33259.2| Hypothetical protein F38A1.8 [Caenorhabditis elegans] Length = 468 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 71/127 (55%), Gaps = 11/127 (8%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKP--- 102 E++ + LI ++ A+KI + +++K K V+ RV +V + + L+ L P Sbjct: 337 EKMRENLILKNVASEPAEKICQSVVSKLEGKVVNNFSRVAQEVKTAVRESLVQLLTPKHR 396 Query: 103 -------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 RP+VI+ GVNGVGK+T + K++ +++ +V++AAGDTFR+ A+ Sbjct: 397 VDILRDVIEAKRDGRPYVIVFCGVNGVGKSTNLAKITFWLTENKHRVLIAAGDTFRAGAV 456 Query: 156 DQLKIWA 162 +QL+ A Sbjct: 457 EQLRTHA 463 >gi|295115824|emb|CBL36671.1| Signal recognition particle GTPase [butyrate-producing bacterium SM4/1] Length = 251 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 L ++DA TGQ+A+ MF+ G G+I+TKMDG RGG + I P+ ++G+ Sbjct: 16 QTLLIVDAMTGQDAVNVAGMFNDKIGIDGVILTKMDGDTRGGAALSIKAVTGKPILYVGM 75 Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315 GE ++DLE F ++ I G D Sbjct: 76 GEKLSDLEQFYPDRMASRILGMGD 99 >gi|315281333|ref|ZP_07869980.1| flagellar biosynthesis protein FlhF [Listeria marthii FSL S4-120] gi|313615021|gb|EFR88518.1| flagellar biosynthesis protein FlhF [Listeria marthii FSL S4-120] Length = 407 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 89/197 (45%), Gaps = 16/197 (8%) Query: 104 NWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 ++D S HR +I ++G GVGKTT + KL ++ V DTFRS A++Q + +A Sbjct: 200 SFDLSNHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYA 257 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 D+ + + + + A L VD ++IDT GR + + I V+ Sbjct: 258 DKLEVELI---VATSPAELEEAVQYMTYVSGVDHILIDTVGRNYLAEESVNEIAAYTDVV 314 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVV 280 H L ++G + + + +A G I+TKMD T R G L ++ Sbjct: 315 --------HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQ 366 Query: 281 THKIPVYFLGVGEGIND 297 +PV ++ G+ I + Sbjct: 367 ETNLPVLYMTDGQNITE 383 >gi|255028364|ref|ZP_05300315.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes LO28] Length = 266 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 15/191 (7%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 HR +I ++G GVGKTT + KL ++ V DTFRS A++Q + +AD+ + Sbjct: 65 HR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVE 122 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + + + A L VD ++IDT GR + ++ I V+ Sbjct: 123 LI---VATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVV------ 173 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVVTHKIPV 286 H L ++G + + + +A G I+TKMD T R G L ++ +PV Sbjct: 174 --HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPV 231 Query: 287 YFLGVGEGIND 297 ++ G+ I + Sbjct: 232 LYMTDGQNITE 242 >gi|289548938|ref|YP_003473926.1| flagellar biosynthetic protein FlhF [Thermocrinis albus DSM 14484] gi|289182555|gb|ADC89799.1| flagellar biosynthetic protein FlhF [Thermocrinis albus DSM 14484] Length = 378 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/216 (23%), Positives = 97/216 (44%), Gaps = 18/216 (8%) Query: 84 VLYDVSELIHKMLMPLSKPFN-W-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 VL ++E I + + + +P W DF VI ++G GVGKTT + KL+ + +G + Sbjct: 150 VLESLTEGIERNVPMIKEPMERWKDF----RVIALLGPTGVGKTTTLAKLAYVLKKSGKR 205 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 + + D++R A +QL+ +A F ++ + +D+L++DT Sbjct: 206 IGVITVDSYRVGAREQLRTYAHLMEIPFRIADTPQKLRECV------GELSSMDLLLVDT 259 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AGR + + + + L ++ + L A T + + + + GL Sbjct: 260 AGRSQYDEMRIRELATFFHRLPTVELYL------TLSANTDERIMYEAVEHFSFLPLEGL 313 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 + TK+D TA G +I + K+P+ G+ + + Sbjct: 314 VFTKVDETAYFGNIINVAFRTKLPILCFTNGQRVPE 349 >gi|62719471|gb|AAX93336.1| signal recognition particle protein Ffh [Lactobacillus sanfranciscensis] Length = 257 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 1/102 (0%) Query: 215 IGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 I K++ LK + A P +L V+DA TGQNA+ E F+ TG+++TK+DG RGG Sbjct: 24 IEKLMNELKAIKQVALPTDILLVVDAMTGQNAVNMAEGFNEALDITGVVLTKLDGDTRGG 83 Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 + I P+ F G GE +++L+ F ++ I G D Sbjct: 84 AALSIKAVTGKPILFTGQGEKMDNLDVFHPDRMASRILGMGD 125 >gi|224437146|ref|ZP_03658127.1| flagellar biosynthesis regulator FlhF [Helicobacter cinaedi CCUG 18818] gi|313143609|ref|ZP_07805802.1| flagellar GTP-binding protein FlhF [Helicobacter cinaedi CCUG 18818] gi|313128640|gb|EFR46257.1| flagellar GTP-binding protein FlhF [Helicobacter cinaedi CCUG 18818] Length = 513 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 23/215 (10%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAA 146 E++ KM+ S+ N ++ ++++VG GVGKTT + KL+ + S + +V + Sbjct: 294 EVLRKMIYCRSENLN---NNDKKIMMLVGPTGVGKTTTLAKLAARYSLMLNKRYRVGVIT 350 Query: 147 GDTFRSAAIDQLKIWAD--RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 DT+R AA+DQL +A + S D V + + A ++ K D ++IDTAG Sbjct: 351 LDTYRLAAVDQLMAYARMMKLSIDTV---VEPEELPKAIDSLKHC-----DYILIDTAGH 402 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 ++ GK+ + L+ + VL L+ + LI + Sbjct: 403 SQHDR------GKLQNIKSYLNTDYKIDISLVLALNAKYEDLKDTYNAFSELNIDTLIFS 456 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDL 298 K+D + G + +V K P+ +L +G+G+ NDL Sbjct: 457 KLDESRNFGNMFSLVYDTKKPISYLSIGQGVPNDL 491 >gi|260886654|ref|ZP_05897917.1| flagellar biosynthesis protein FlhF [Selenomonas sputigena ATCC 35185] gi|330839515|ref|YP_004414095.1| GTP-binding signal recognition particle SRP54 G- domain protein [Selenomonas sputigena ATCC 35185] gi|260863797|gb|EEX78297.1| flagellar biosynthesis protein FlhF [Selenomonas sputigena ATCC 35185] gi|329747279|gb|AEC00636.1| GTP-binding signal recognition particle SRP54 G- domain protein [Selenomonas sputigena ATCC 35185] Length = 578 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 92/191 (48%), Gaps = 13/191 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 S + + ++G GVGKTT + K++ + + + G+ DT+R +A++QLK +AD Sbjct: 384 SRKRKIAALLGPTGVGKTTTLAKIAAQCVLEKGISTAFITADTYRISAVEQLKTYADILG 443 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D A + F+Q Q +++IDTAGR +N MA + + + V + ++ Sbjct: 444 LPIAIV-YTPDELKEAIQKFRQKQ-----LILIDTAGRSQHNRRQMAELKEFLAVNQNIE 497 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 + VL ATT + + +V +I TK D T G ++ I+ ++ + Sbjct: 498 KYL------VLSATTKNEDAKDIIDKFSVCKPDKVIFTKTDETKSLGIILNILRRKEMRL 551 Query: 287 YFLGVGEGIND 297 +L G+ + D Sbjct: 552 SYLTNGQSVPD 562 >gi|56964014|ref|YP_175745.1| flagellar biosynthesis protein FlhF [Bacillus clausii KSM-K16] gi|56910257|dbj|BAD64784.1| flagellar biosynthesis protein FlhF [Bacillus clausii KSM-K16] Length = 325 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 96/215 (44%), Gaps = 30/215 (13%) Query: 91 LIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGD 148 L+H L +PF R ++V G GVGKTT I KL +K M + V D Sbjct: 115 LMHTFRASLQLQPF---VQKRQQTLIVAGPTGVGKTTTIAKLAAKAMFEENKTVSFITFD 171 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ------AKKVDVLIIDTA 202 T+R AA++QLK +A Y A+ +++ + D++++DTA Sbjct: 172 TYRIAAVEQLKTYAHILDCPI-------------YTAYNESELIDLCGRQTADLVLVDTA 218 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 GR + + + + + IR D V+ + A ++A + F GLI Sbjct: 219 GRNYLHEQMPVELVEYIRQSASCD-----LVVALSLAAKAEDARHMLSRFPKEL-VNGLI 272 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 +TK+D TA G L ++ + IPV + G+ + + Sbjct: 273 LTKLDETASLGTLCELLYSEAIPVACVTTGQNVPE 307 >gi|303240267|ref|ZP_07326786.1| flagellar biosynthetic protein FlhF [Acetivibrio cellulolyticus CD2] gi|302592177|gb|EFL61906.1| flagellar biosynthetic protein FlhF [Acetivibrio cellulolyticus CD2] Length = 394 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 90/193 (46%), Gaps = 21/193 (10%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWAD----R 164 +P V++ VG GVGKTT + K++ S + KV L DT+R AA++QLK +A+ Sbjct: 199 KPTVVIFVGPTGVGKTTTLAKIAANYSLNQKKKVGLITADTYRIAAVEQLKTYAEILGMP 258 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + +EI +A + Q K D+++IDTAGR + N + KM+ Sbjct: 259 VEVIYSINEIN--------DAKDKYQDK--DIILIDTAGRSYRNKSQFDEL-KML----- 302 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 +D V VL TTG R + + LI TK+D T G ++ Sbjct: 303 VDASHADEVFLVLSTTTGVRNCRDILASYDFLKDYKLIFTKLDETPALGIILNARRLTNR 362 Query: 285 PVYFLGVGEGIND 297 + ++ +G+ + D Sbjct: 363 NLSYVTIGQSVPD 375 >gi|258592483|emb|CBE68792.1| putative Flagellar biosynthesis protein flhF (Flagella-associated GTP-binding protein) [NC10 bacterium 'Dutch sediment'] Length = 388 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 115/258 (44%), Gaps = 46/258 (17%) Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYD--------VSELIHKML------MPLSKPFNWD 106 A+ + VEE + +R+ VSV+ L + VS L+ ++L +P+ K N Sbjct: 132 ALLSQEVEEGVARRWV--VSVRDRLREAASPDSTPVSALLAEVLAREIVGLPVPKAGNGR 189 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 V+ +VG GVGKTT I KL+ G +V L DT+R A QLK +A+ Sbjct: 190 -----RVVALVGPTGVGKTTTIAKLAAGCRFREGKRVALITTDTYRIAGAQQLKNYAELI 244 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQA--KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + + + +D K+A A + DV+ IDT GR L+ Sbjct: 245 GLPYCVAPLPAD--------LKRALAGDRDADVIFIDTVGRSARRK----------DQLE 286 Query: 224 RLDPHAP----HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 L +A + V VL ATT + L Q + G + +I TK+D TA G + Sbjct: 287 ELATYAGSDDGYEVHLVLSATTKRADLLQAVEAYRPLGFSSIIATKLDETATVGPVCEAA 346 Query: 280 VTHKIPVYFLGVGEGIND 297 +T +P+ +L G+ + D Sbjct: 347 LTAAVPISYLTTGQEVPD 364 >gi|312882108|ref|ZP_07741858.1| flagellar biosynthesis regulator FlhF [Vibrio caribbenthicus ATCC BAA-2122] gi|309370244|gb|EFP97746.1| flagellar biosynthesis regulator FlhF [Vibrio caribbenthicus ATCC BAA-2122] Length = 478 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 32/209 (15%) Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAA 154 +P++K D R V+ ++G GVGKTT + KL+ + M V L + DT+R A Sbjct: 254 IPIAK---QDILKRGGVVALLGPTGVGKTTTVAKLAARAAMEFGSDNVALVSTDTYRIGA 310 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN 208 +QL I+ ++ S+ A + Y Q + ++++DTAG RL Sbjct: 311 HEQLSIYGRIMGCPVKVAKDSSELADVIY------QLRNRRLVLVDTAGMGQRDVRLSEQ 364 Query: 209 -SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKM 266 LM G++I HS L VL AT + L++ +E F + +G IMTK+ Sbjct: 365 LDTLMQESGEII-----------HSYL-VLPATAQRKVLQETIEHFKRIP-LSGCIMTKL 411 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 D + G + +VV + +PV ++ G+ + Sbjct: 412 DESLSLGEFVSVVVQNSLPVAYIANGQRV 440 >gi|255024776|ref|ZP_05296762.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL J1-208] Length = 200 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 15/191 (7%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 +HR +I ++G GVGKTT + KL ++ V DTFRS A++Q + +AD+ Sbjct: 23 NHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV 80 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + + + + A L VD ++IDT GR + ++ I V+ Sbjct: 81 ELI---VATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVV----- 132 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVVTHKIP 285 H L ++G + + + +A G I+TKMD T R G L ++ +P Sbjct: 133 ---HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLP 189 Query: 286 VYFLGVGEGIN 296 V ++ G+ I Sbjct: 190 VLYMTDGQNIT 200 >gi|253702436|ref|YP_003023625.1| GTP-binding signal recognition particle SRP54 G- domain protein [Geobacter sp. M21] gi|251777286|gb|ACT19867.1| GTP-binding signal recognition particle SRP54 G- domain protein [Geobacter sp. M21] Length = 481 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 19/191 (9%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P ++ VVG GVGKTT I K++ + + + V + D FR A++QLK +A Sbjct: 286 PRIVAVVGPTGVGKTTTIAKIAALYALNRRVSVAMVTMDNFRVGAVEQLKTYAKIMDLPL 345 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 E+ ++ L + + D+++IDTAGR +S ++ + L+ H Sbjct: 346 ---EVAGNSQELGKALARHSDK---DLIMIDTAGRSPKDS------ERLDELKGYLEAHN 393 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGT---TGLIMTKMDGTARGGGLIPIVVTHKIPV 286 V L ATT R+++ A GT T L+ TK+D + G ++ + HK+P+ Sbjct: 394 GIDVYLCLSATT---RTREIDEIIATFGTLPITKLLFTKLDESRSLGCIVDTYLKHKVPL 450 Query: 287 YFLGVGEGIND 297 + G+ + + Sbjct: 451 SYFSTGQKVPE 461 >gi|188997551|ref|YP_001931802.1| GTP-binding signal recognition particle SRP54 G- domain [Sulfurihydrogenibium sp. YO3AOP1] gi|188932618|gb|ACD67248.1| GTP-binding signal recognition particle SRP54 G- domain [Sulfurihydrogenibium sp. YO3AOP1] Length = 399 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 69/283 (24%), Positives = 133/283 (46%), Gaps = 32/283 (11%) Query: 21 FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80 + ++ KE IT+ + + LD L +LLI+ D+ + VA++IV R A + Sbjct: 120 YYDNNITYKE-ITEEFTGKALD------LINLLIQKDVELDVAKEIV------RNACGLE 166 Query: 81 VQRVLYDVSELIHK--MLMPLSKPFNWD---F--SHRPHVILVVGVNGVGKTTVIGKLSK 133 + D+ ++ ++ + K F + F S R V+ +G GVGKTT + K++ Sbjct: 167 MGSNKLDLKHFTYRESLIEGIEKSFIFKGDIFKDSDRRRVVAFLGPTGVGKTTNLFKVAS 226 Query: 134 KMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 K+ + KV + + DTF++ A DQ + + + F +I SD L E Sbjct: 227 KLILEENKKVAVVSIDTFKAGAGDQARSYCNILGIPF---QILSDPKKLR-ETVDDLDF- 281 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 VDV++IDT GR H + + I + +R++ ++ ++ V + + ++ + Sbjct: 282 -VDVILIDTVGRSHYDHWKLGEIKETLRLIDEIE-----YMMVVSCNWKNKESYNLIQKY 335 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 + L TK+D TA G ++ + K+P+ ++ G+ + Sbjct: 336 RKFFNISYLFFTKIDETAYPGTILNLAYKTKLPLTYISTGQNV 378 >gi|157692320|ref|YP_001486782.1| flagellar biosynthesis regulator FlhF [Bacillus pumilus SAFR-032] gi|157681078|gb|ABV62222.1| flagellar biosynthesis protein FlhF [Bacillus pumilus SAFR-032] Length = 371 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 73/263 (27%), Positives = 115/263 (43%), Gaps = 46/263 (17%) Query: 41 LDDGVREE-LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99 LDD +R+E L+ LL + + QK +E+LLT S ++ Sbjct: 133 LDDAIRDECLKGLLTKGAVKEEQIQKELEQLLTDMLPSHTSDDPMI-------------- 178 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQL 158 R I++ G G GKTT I KL+ K + K+ DT+R AAI+QL Sbjct: 179 ----------RSKYIVLFGSTGAGKTTTIAKLAAKTAIQKQKKIAFITTDTYRIAAIEQL 228 Query: 159 KIWADRTSADF-VCSEIGSDAAALAYEAFKQAQA--KKVDVLIIDTAGRLHNNSILMAGI 215 K +A+ +A VC + E F +AQ K+ D + +DTAGR + + Sbjct: 229 KTYAELLNAPLEVC---------YSREDFVKAQETFKEYDHIFVDTAGRNFKEEAYIKEL 279 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTG-QNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 +I + + S L V+ AT+ Q+ V+ F V+ I TK+D T G Sbjct: 280 TDIIPFDESI-----QSFL-VMSATSKYQDMKAMVKRFEHVS-IDQFIFTKVDETDTMGT 332 Query: 275 LIPIVVTHKIPVYFLGVGEGIND 297 + I+ +I + FL G+ + + Sbjct: 333 IFQIIADSQIGLGFLTNGQNVPE 355 >gi|172057868|ref|YP_001814328.1| GTP-binding signal recognition particle [Exiguobacterium sibiricum 255-15] gi|171990389|gb|ACB61311.1| GTP-binding signal recognition particle SRP54 G- domain [Exiguobacterium sibiricum 255-15] Length = 356 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 22/189 (11%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 I+V G GVGKTT + KL+ KV L DT+R +A++QL+ +AD Sbjct: 165 IMVTGPTGVGKTTTLAKLAAYYRLTKQQKVGLITTDTYRISAVEQLRTYAD--------- 215 Query: 173 EIGSDAAALAY--EAFKQAQA--KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 I +AY + F+QA+ DV++IDTAGR + L AG + LK+ Sbjct: 216 -IIDIPLRVAYDLQEFEQAKVDLSDCDVILIDTAGR----NFLDAG---YVEQLKKRHDF 267 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 + V VL T+ L Q++ +G I TK D T + + ++P++ Sbjct: 268 SETDVFLVLSLTSKYRDLEQIQQRFDQVPLSGFIFTKADETIDLWSIYGLTKKTQLPLFC 327 Query: 289 LGVGEGIND 297 L G+ + + Sbjct: 328 LTTGQEVPE 336 >gi|42528186|ref|NP_973284.1| flagellar biosynthetic protein FlhF [Treponema denticola ATCC 35405] gi|41819456|gb|AAS13203.1| flagellar biosynthetic protein FlhF [Treponema denticola ATCC 35405] Length = 446 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 76/325 (23%), Positives = 145/325 (44%), Gaps = 49/325 (15%) Query: 3 NQKVASESLSWIRKLTKGFASTSLK----------LKEGITDIISSRRLDDGVREELED- 51 ++++A + + +I KL + +S+ +K L E + ++ RL + +E E+ Sbjct: 102 SEEMAEKMMPYIEKL-ENQSSSPIKTDIESKEFKNLAETVERLVEEIRLKNSPSQEHENI 160 Query: 52 -----LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM--------- 97 LL +D + I E++ +K++S+ L D EL+ K ++ Sbjct: 161 SKIAALLEENDFTAKYIRSIKEKI-----SKNLSLAE-LNDF-ELVQKKVLDWIASSIQI 213 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS-------KKMSDAGLKVMLAAGDTF 150 L + N D S + +I +VG G+GKTT + KL+ K+ L V + D + Sbjct: 214 KLEETNNDDPSKKQKLIALVGPTGIGKTTTLAKLAAYYILAVSKLEKRSLDVRVITIDQY 273 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R A Q+K + + + I +D L + D++ IDT GR + Sbjct: 274 RIGAAFQIKKYCEHMGIPLI---IATDP--LDLHKYLDLYKDSADIICIDTTGRSPTDP- 327 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 I +M + ++P + L V T + + ++ + +V + LI+TK+D TA Sbjct: 328 --EKILEMQKYFDEIEPGRIETHLVVSAVTKAADIIEIIKQY-SVFNFSSLIITKLDETA 384 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGI 295 G +I ++ +KIPV ++ G+ + Sbjct: 385 HVGSIISVLDEYKIPVAYITEGQTV 409 >gi|325474609|gb|EGC77795.1| flagellar biosynthetic protein FlhF [Treponema denticola F0402] Length = 446 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 76/325 (23%), Positives = 145/325 (44%), Gaps = 49/325 (15%) Query: 3 NQKVASESLSWIRKLTKGFASTSLK----------LKEGITDIISSRRLDDGVREELED- 51 ++++A + + +I KL + +S+ +K L E + ++ RL + +E E+ Sbjct: 102 SEEMAEKMMPYIEKL-ENQSSSPIKTDIESKEFKNLAETVERLVEEIRLKNSPSQEHENI 160 Query: 52 -----LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM--------- 97 LL +D + I E++ +K++S+ L D EL+ K ++ Sbjct: 161 SKIAALLEENDFTAKYIRSIKEKI-----SKNLSLAE-LNDF-ELVQKKVLDWIASSIQI 213 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS-------KKMSDAGLKVMLAAGDTF 150 L + N D S + +I +VG G+GKTT + KL+ K+ L V + D + Sbjct: 214 KLEETNNDDPSKKQKLIALVGPTGIGKTTTLAKLAAYYILAVSKLEKRSLDVRVITIDQY 273 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R A Q+K + + + I +D L + D++ IDT GR + Sbjct: 274 RIGAAFQIKKYCEHMGIPLI---IATDP--LDLHKYLDLYKDSADIICIDTTGRSPTDP- 327 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 I +M + ++P + L V T + + ++ + +V + LI+TK+D TA Sbjct: 328 --EKILEMQKYFDEIEPGRIETHLVVSAVTKAADIIEIIKQY-SVFNFSSLIITKLDETA 384 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGI 295 G +I ++ +KIPV ++ G+ + Sbjct: 385 HVGSIISVLDEYKIPVAYITEGQTV 409 >gi|297690657|ref|XP_002822734.1| PREDICTED: signal recognition particle receptor subunit alpha-like [Pongo abelii] Length = 568 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 11/141 (7%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96 SR + V +++ D LI ++ +A ++ E + K K + + V V + + + L Sbjct: 334 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 393 Query: 97 MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + + +P + RP+V+ GVNGVGK+T + K+S + + G V++AA Sbjct: 394 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 453 Query: 147 GDTFRSAAIDQLKIWADRTSA 167 DTFR+ A++QL+ R SA Sbjct: 454 CDTFRAGAVEQLRTHTRRLSA 474 >gi|332799196|ref|YP_004460695.1| flagellar biosynthetic protein FlhF [Tepidanaerobacter sp. Re1] gi|332696931|gb|AEE91388.1| flagellar biosynthetic protein FlhF [Tepidanaerobacter sp. Re1] Length = 383 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 14/194 (7%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADR 164 + S ++I VG GVGKTT I KL+ S KV + DTFR AI+QL+++ D Sbjct: 181 ELSKEKNIIAFVGPTGVGKTTTIAKLAAHFSLYKNKKVAMITADTFRVGAIEQLRLYGDL 240 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 D + A D+L+IDT G NN + I K+ +L Sbjct: 241 LEIPVFVVYSFEDVKTIL------ADTNDYDILLIDTMGFSPNNRM---QIKKIKGLLDY 291 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI-PIVVTHK 283 ++P+ H V+ AT Q+ + + + + +++TK+D T G L+ I +++ Sbjct: 292 INPNEIHIVISA--ATKNQDLVDILNNYKELQ-YKKIVVTKLDETKCYGMLLNAISISNG 348 Query: 284 IPVYFLGVGEGIND 297 + +L +G+ + D Sbjct: 349 CKLSYLTMGQNVPD 362 >gi|215431868|ref|ZP_03429787.1| cell division protein ftsY [Mycobacterium tuberculosis EAS054] gi|289755034|ref|ZP_06514412.1| cell division protein ftsY [Mycobacterium tuberculosis EAS054] gi|289695621|gb|EFD63050.1| cell division protein ftsY [Mycobacterium tuberculosis EAS054] Length = 280 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 78/131 (59%), Gaps = 7/131 (5%) Query: 42 DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLM 97 D+ +++ED L+ +D+G A +V +L ++ + +V + VL DV LI+++ Sbjct: 151 DEDSWQDVEDTLLVADLGPAATASVVSQLRSRLASGNVRTEADARAVLRDV--LINELQP 208 Query: 98 PLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 + + + P V+LVVGVNG GKTT +GKL++ + G +V+L A DTFR+AA D Sbjct: 209 GMDRSIRALPHAGHPSVLLVVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAAD 268 Query: 157 QLKIWADRTSA 167 QL+ WA R A Sbjct: 269 QLQTWAARVGA 279 >gi|291288735|ref|YP_003505551.1| flagellar biosynthetic protein FlhF [Denitrovibrio acetiphilus DSM 12809] gi|290885895|gb|ADD69595.1| flagellar biosynthetic protein FlhF [Denitrovibrio acetiphilus DSM 12809] Length = 395 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 56/251 (22%), Positives = 120/251 (47%), Gaps = 17/251 (6%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107 E +L++++ + +A K ++++ KR + ++ ++ V++L+ + L+P+ K + Sbjct: 136 EFYNLMVKNGVDEIIAYKFLKKI-EKRASHGLTPNQIRNLVTQLMSE-LIPVEKDYFSSI 193 Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 + + V+ +VG GVGKTT I K++ +S V L D FR A++QL+ +A+ Sbjct: 194 NKK--VLALVGPTGVGKTTTIAKIAANLSLKMNKSVALITVDNFRIGAVEQLRTYAEIVD 251 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + ++ + YE + D + +D+ GR + + IG +++ ++ + Sbjct: 252 IPLRVASTPTELERIIYE------CRDYDYVFVDSMGRSQFDD---SQIGDLLKFME-VS 301 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 P V V+ ++ + ++ LI TK+D T G L+ + + K P+ Sbjct: 302 PLV--KVALVMSMSSNHQEMADTYDRYSKLLPEYLIFTKLDETKYFGPLVNLPIKKKTPL 359 Query: 287 YFLGVGEGIND 297 L G+ + D Sbjct: 360 MLLAGGQNVPD 370 >gi|313681604|ref|YP_004059342.1| flagellar biosynthetic protein flhf [Sulfuricurvum kujiense DSM 16994] gi|313154464|gb|ADR33142.1| flagellar biosynthetic protein FlhF [Sulfuricurvum kujiense DSM 16994] Length = 422 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 103/239 (43%), Gaps = 35/239 (14%) Query: 91 LIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLSKKMS---DAGLKVML 144 L+ KM+ P + + RP VI++VG GVGKTT I KL+ + S + KV L Sbjct: 200 LMRKMI-----PVRLESAPRPGSKKVIMLVGPTGVGKTTSIAKLAARFSYLLEKKYKVGL 254 Query: 145 AAGDTFRSAAIDQLKIWAD------RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198 DT+R A++QL +A T D E S AL Y D ++ Sbjct: 255 VVLDTYRIGAVEQLMQYARMMKLGIETVVD--PPEFSSALNALRYS----------DYIL 302 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 IDT G ++ I K+ L+ + V+ V+ ++ + L+ A G Sbjct: 303 IDTMG---SSPYDKGKIEKIYECLRDNNTDYTVDVVLVMPSSIKYDDLKATYENFAPLGI 359 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317 ++ TK+D T G + +V K+P+ + VG+ + + DF + CL G Sbjct: 360 DTMMFTKLDETRGFGNIFSLVYETKVPISYFSVGQEVPEDLVVATSDF---LVDCLMNG 415 >gi|15611457|ref|NP_223108.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori J99] gi|12230112|sp|Q9ZM34|FLHF_HELPJ RecName: Full=Flagellar biosynthesis protein flhF; AltName: Full=Flagella-associated GTP-binding protein gi|4154928|gb|AAD05976.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99] Length = 455 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%) Query: 79 VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137 V+++R E++ K++ L +P + + + ++++VG GVGKTT + KL+ + S Sbjct: 226 VTIKRYF---REVLRKII--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 279 Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191 KV + D +R A++QL +A++ A + + AL Y Sbjct: 280 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 331 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 D +++DT G + +AG+ + I +D V VL TT ++ + Sbjct: 332 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 383 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 V G LI TK+D + G L +V + P+ +L VG+ + Sbjct: 384 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 427 >gi|291538514|emb|CBL11625.1| flagellar biosynthetic protein FlhF [Roseburia intestinalis XB6B4] Length = 330 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 16/163 (9%) Query: 52 LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HR 110 +L R+ + V +K V ++L + S V +S + KM++ L +P S + Sbjct: 160 MLYRTLLENEVNEKYVNQILDEAEKVMHSGSSVDAILSNVYQKMILKLGQPDTICVSGKK 219 Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I VG GVGKTT I K++ K + G+K+ DT+R AA +QL+++A+ A Sbjct: 220 PRIIFFVGPTGVGKTTTIAKIASKYKLEMGMKIAFLTADTYRIAATEQLRVYANILDAPM 279 Query: 170 VCSEIGSDAAALAYEAFKQAQA----KKVDVLIIDTAGRLHNN 208 ++ Y A + A + D++ +DTAG H N Sbjct: 280 ----------SIIYSAEEMNAAIERVSEYDLIFVDTAGFSHKN 312 >gi|304404265|ref|ZP_07385927.1| flagellar biosynthetic protein FlhF [Paenibacillus curdlanolyticus YK9] gi|304347243|gb|EFM13075.1| flagellar biosynthetic protein FlhF [Paenibacillus curdlanolyticus YK9] Length = 451 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 99/207 (47%), Gaps = 21/207 (10%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD-- 168 VI VG GVGKTT I KL+ + + G KV DT+R AA+DQL+ +A+ + Sbjct: 255 RVIYFVGPTGVGKTTTIAKLAAEQTIKYGRKVGFITSDTYRIAAVDQLRTYANILNVPME 314 Query: 169 --FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 F +E+ AF+Q Q + +++++DTAGR + + + ++ + ++ Sbjct: 315 VVFSPNEVP--------RAFEQLQEQ--EMILMDTAGRNYRSELHVSEVNSLM-----YH 359 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 A S VL T + V G + TK+D T G L+ + + + Sbjct: 360 KQAEGSAYLVLSMTGRTKDMAVVAERFLPYGIRNAVFTKLDETNVYGMLMNLTLEFGLMP 419 Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVITG 312 ++ G+ + +D+ PF A+ + A++ G Sbjct: 420 AYVTSGQTVPDDIAPFNAETYVALLLG 446 >gi|226225719|ref|YP_002759825.1| putative flagellar biosynthesis protein FlhF [Gemmatimonas aurantiaca T-27] gi|226088910|dbj|BAH37355.1| putative flagellar biosynthesis protein FlhF [Gemmatimonas aurantiaca T-27] Length = 292 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 23/204 (11%) Query: 110 RPHVILVVGVNGVGKTTVIGKLS--KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 RP+ I +VG G GKTT KL+ + M A +L DT+R ++QL +A+ Sbjct: 85 RPYCIALVGPTGAGKTTTAAKLAVRRGMFGAARPGLLTI-DTYRVGGMEQLATYAELADV 143 Query: 168 DF--VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 F V E DAA + ++ D++I+DT GR S A + + R L L Sbjct: 144 PFEVVYDEKEVDAA-------MKRLSQTCDIVIVDTPGR----SPASAELTERWRSL--L 190 Query: 226 DPHAPHSVLQVLDATTGQNAL----RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 D AP V V+ AT + R A GTT L+++K+D R G+ + ++ Sbjct: 191 DTIAPDEVHLVIPATLRADLAVDIGRAYRGTRAHCGTTHLLLSKLDEVPRETGVTDLALS 250 Query: 282 HKIPVYFLGVGEGIN-DLEPFVAK 304 ++P ++ G+ + DL+P VA+ Sbjct: 251 LEMPTRWIADGQDVPADLKPGVAR 274 >gi|221105682|ref|XP_002169513.1| PREDICTED: similar to signal recognition particle 54kDa, partial [Hydra magnipapillata] gi|221106571|ref|XP_002170252.1| PREDICTED: similar to signal recognition particle 54kDa, partial [Hydra magnipapillata] Length = 83 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 44/78 (56%) Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 +P +++ V+DA+ GQ Q F +I+TK+DG A+GGG + V P+ F Sbjct: 1 SPDNIIFVMDASIGQACEAQARAFKEKVDVASVIITKLDGHAKGGGALSAVAGTSSPIIF 60 Query: 289 LGVGEGINDLEPFVAKDF 306 +G GE I+D EPF + F Sbjct: 61 IGTGEHIDDFEPFKTQPF 78 >gi|87119468|ref|ZP_01075365.1| flagellar biosynthesis protein FlhF [Marinomonas sp. MED121] gi|86164944|gb|EAQ66212.1| flagellar biosynthesis protein FlhF [Marinomonas sp. MED121] Length = 427 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 103/217 (47%), Gaps = 31/217 (14%) Query: 117 VGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 +G GVGKTT IGK++ + + V+L DT+R AA +QL+ + + V Sbjct: 225 MGPTGVGKTTTIGKIAAQHVLKHGSDSVVLVTTDTYRIAAHEQLRTFGRILNVPVVVVNE 284 Query: 175 GSDAAAL--AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 SD + Y F ++++DTAG + + + + ++KR H+ Sbjct: 285 YSDLNEVLDKYSNFS--------LVLVDTAGMNPRDR----NLERQLLMMKRA--HSSLK 330 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 L VL T+ + L+ V +A G +++K+D +A G + +V+ ++PV ++ G Sbjct: 331 KLLVLPCTSQRQVLKTVVDVYAQVQLDGCVLSKLDESASLGEAVSVVIEERLPVVYIADG 390 Query: 293 EGI-NDLEP-----------FVAKDFSAVITGCLDYG 317 + I +D++P + A+ +S + + L YG Sbjct: 391 QRIPDDIQPARAHNIISRAVYTAEQYSHIYSS-LKYG 426 >gi|325971102|ref|YP_004247293.1| GTP-binding signal recognition particle SRP54 G- domain [Spirochaeta sp. Buddy] gi|324026340|gb|ADY13099.1| GTP-binding signal recognition particle SRP54 G- domain [Spirochaeta sp. Buddy] Length = 330 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 91/188 (48%), Gaps = 12/188 (6%) Query: 115 LVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 + VG GVGKTT + K + + + G KV L + DT R+ +++Q++ +A + + Sbjct: 129 IFVGAAGVGKTTTLVKTALYLRAQKGKKVALLSFDTQRTGSVEQIRQFAHEFALPLYEA- 187 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 SD +ALA A K D +++DT+GR + L A + M+ VL P S Sbjct: 188 --SDESALAGLL---ASLKGFDHILVDTSGRSAKDEELKAFLDGMLAVL----PFQGCST 238 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 V+ A+ ++ L + A +I TK+D T+ G L+ V +P+ FL G+ Sbjct: 239 YLVVSASHKESDLLAQQQLFAKQRVKAIICTKLDETSGIGNLLSFVQKSDVPLLFLADGQ 298 Query: 294 GI-NDLEP 300 I D P Sbjct: 299 TIPQDFHP 306 >gi|315179522|gb|ADT86436.1| flagellar biosynthesis regulator FlhF [Vibrio furnissii NCTC 11218] Length = 512 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 29/200 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 294 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 353 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 354 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 407 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 ++I HS L VL AT + L++ +E F + +G IMTK+D G Sbjct: 408 EII-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 454 Query: 276 IPIVVTHKIPVYFLGVGEGI 295 + +VV + +PV ++ G+ + Sbjct: 455 VSVVVQNSLPVAYIANGQRV 474 >gi|222100642|ref|YP_002535210.1| Flagellar biosynthesis protein FlhF [Thermotoga neapolitana DSM 4359] gi|221573032|gb|ACM23844.1| Flagellar biosynthesis protein FlhF [Thermotoga neapolitana DSM 4359] Length = 382 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 14/158 (8%) Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA-FKQAQAKKVDVLII 199 +V + DT+R AA +QLK +A+ +I A EA ++ K DVL+I Sbjct: 207 RVAILTLDTYRIAAAEQLKTYAE-------IMDIPMKIAYTPKEAEYEMMALKDYDVLLI 259 Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259 DTAGR H N + M+ + + +K P+ V+ + ++++ +V T Sbjct: 260 DTAGRSHQNDLQMSEVKALAEAVK------PNITFLVVAMNYKLDDMKKILEKFSVVRPT 313 Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 LI+TKMD T+ G + I IP+ F+ G+ + D Sbjct: 314 HLILTKMDETSVYGTFVNISEITDIPIAFVTNGQRVPD 351 >gi|308535387|ref|YP_002140554.2| flagellar biogenesis protein FlhF [Geobacter bemidjiensis Bem] gi|308052732|gb|ACH40758.2| flagellar biogenesis protein FlhF [Geobacter bemidjiensis Bem] Length = 484 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 20/205 (9%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P ++ VVG GVGKTT I K++ + + + V + D FR A++QLK +A Sbjct: 289 PRIVAVVGPTGVGKTTTIAKIAALYALNRRVSVAMVTMDNFRVGAVEQLKTYAKIMDLPL 348 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 E+ ++ L + + D+++IDTAGR ++ ++ + L+ H Sbjct: 349 ---EVAGNSQELGKALARHSDK---DLIMIDTAGRSPKDT------ERLDELKGYLEAHN 396 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGT---TGLIMTKMDGTARGGGLIPIVVTHKIPV 286 V L ATT R+++ A GT T L+ TK+D + G ++ + HK+P+ Sbjct: 397 GIDVYLCLSATT---RTREIDEIIATFGTLPITKLLFTKLDESRSLGCIVDTYLKHKVPL 453 Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVI 310 + G+ + D+E ++ ++++ Sbjct: 454 SYFSTGQKVPEDIEVASSRKLASLV 478 >gi|114320143|ref|YP_741826.1| GTP-binding signal recognition particle [Alkalilimnicola ehrlichii MLHE-1] gi|114226537|gb|ABI56336.1| GTP-binding signal recognition particle SRP54, G- domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 466 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 15/190 (7%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V+ +VG GVGKTT + KL+ + + +V L + DTFR A DQL+ +A Sbjct: 250 VMALVGPTGVGKTTTVAKLAARFALKHGRDQVALVSTDTFRIGAQDQLRNFASILQVPVY 309 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + G + A + + K++ +++DTAG + L + +RL Sbjct: 310 NAASGEELAGV----LENLDDKRL--VLVDTAGMSQRDVRLAEQFTALRESSRRL----- 358 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 VL A T + L + AVA G I TK+D GGL+ + + ++P+ +LG Sbjct: 359 -RTCLVLSAATQLSTLTESMRAFAVAEPQGCIFTKLDEATSLGGLLTVALRSRLPIAWLG 417 Query: 291 VGEGI-NDLE 299 G+ + DLE Sbjct: 418 TGQRVPEDLE 427 >gi|260767646|ref|ZP_05876581.1| flagellar biosynthesis protein FlhF [Vibrio furnissii CIP 102972] gi|260617155|gb|EEX42339.1| flagellar biosynthesis protein FlhF [Vibrio furnissii CIP 102972] Length = 517 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 29/200 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 299 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 358 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 359 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 412 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 ++I HS L VL AT + L++ +E F + +G IMTK+D G Sbjct: 413 EII-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 459 Query: 276 IPIVVTHKIPVYFLGVGEGI 295 + +VV + +PV ++ G+ + Sbjct: 460 VSVVVQNSLPVAYIANGQRV 479 >gi|167630312|ref|YP_001680811.1| GTP-binding signal recognition particle protein, putative [Heliobacterium modesticaldum Ice1] gi|167593052|gb|ABZ84800.1| GTP-binding signal recognition particle protein, putative [Heliobacterium modesticaldum Ice1] Length = 434 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 96/216 (44%), Gaps = 22/216 (10%) Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIW 161 F D V+++VG GVGKTT I KL+ S KV L DT+R AA++QLK + Sbjct: 231 FLPDSGKSQEVVMMVGPTGVGKTTTIAKLAATFSIVNRRKVGLITADTYRIAAVEQLKTF 290 Query: 162 AD--RTSADFVCSEIGSDAAALAYEAFKQAQAKKVD--VLIIDTAGRLHNNSILMAGIGK 217 D D V + +A + A + D +L++DTAGR H N + + Sbjct: 291 GDIIGVPVDVVFTP----------QALRSAIERHRDKELLLVDTAGRSHKNDSQLEELAA 340 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + HS+L VL ATT L Q+ + + TK+D T G ++ Sbjct: 341 YVE-----QSQPSHSIL-VLSATTKFKDLLQITEGFSRMNIDRYLFTKLDETNHYGSILN 394 Query: 278 IVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312 ++ + ++ G+ + +D+E S +I G Sbjct: 395 LIHRTGKSLSYITTGQNVPDDMEVADPNKLSNLIYG 430 >gi|149182525|ref|ZP_01860998.1| flagellar biosynthesis regulator FlhF [Bacillus sp. SG-1] gi|148849785|gb|EDL63962.1| flagellar biosynthesis regulator FlhF [Bacillus sp. SG-1] Length = 384 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 70/286 (24%), Positives = 125/286 (43%), Gaps = 30/286 (10%) Query: 23 STSLKLKEGITD---IISSRRLDDGVREELEDL------LIRSDIGVAVAQKIVEELLTK 73 ++SL+ K+ IT+ I+ + ++G ED+ L +I + E L++ Sbjct: 94 NSSLQFKKEITELKSIVQQLKSNNGFEHYPEDIRHLLLYLKEQEIDENYILEAAEHLVSL 153 Query: 74 RYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 R +KD ++ + VS+ + L LS F S++ + V+G GVGKTT + K++ Sbjct: 154 RESKDSLTASELKSTVSDFMKNKLETLS--FGGT-SYKKKYVNVIGPTGVGKTTTLAKMA 210 Query: 133 -KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-- 189 + + + K+ DT+R AAI+QLK +A + E F++A Sbjct: 211 YEAVLERRKKIAFITTDTYRIAAIEQLKTYAQLLNVPL--------EVVYKLEDFQKAIE 262 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + K D++ IDTAGR + + KMI D VL T + L Q+ Sbjct: 263 KFKDYDMVFIDTAGRNFREEKYVKDLEKMI------DFKNDMETFLVLSMTAKERDLNQI 316 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 + I +K+D T+ G + I+ + ++ G+ + Sbjct: 317 IHNFSTVPIEKFIFSKVDETSSYGTMYNILRNEEKGAAYITAGQSV 362 >gi|309388839|gb|ADO76719.1| flagellar biosynthetic protein FlhF [Halanaerobium praevalens DSM 2228] Length = 466 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 23/206 (11%) Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQL 158 +K D S R ++ +G GVGKTT + K++ + D V L DT+R AA++QL Sbjct: 261 NKEIEIDNSQR--IVSFIGPTGVGKTTTMAKIAAAFALDKDKNVGLITADTYRIAAVEQL 318 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 K +++ F S +L F D+++IDT G + Sbjct: 319 KTYSEIIDIPFAVCYSSSKLPSLIANQFNH-----CDLILIDTPG----------SSWRD 363 Query: 219 IRVLKRLDPHAPHSVLQ----VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 LKRL+ + H + +L T LR + + ++TK+D T+ G Sbjct: 364 KEQLKRLNGYVNHDFIDEVHLLLSLNTKSRDLRNIISKFSTLNPDKALLTKIDETSSYGD 423 Query: 275 LIPIVVTHKIPVYFLGVGEGI-NDLE 299 ++ I + +P+ +L G+ + DLE Sbjct: 424 ILNIKENYNLPLSYLTCGQDVPEDLE 449 >gi|308068673|ref|YP_003870278.1| flagellar GTP-binding protein [Paenibacillus polymyxa E681] gi|305857952|gb|ADM69740.1| Flagellar GTP-binding protein [Paenibacillus polymyxa E681] Length = 480 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 87/185 (47%), Gaps = 15/185 (8%) Query: 113 VILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 ++ V G GVGKTT I KL+ +++ KV DT+R +A++QL+ +A + Sbjct: 279 IVYVAGPTGVGKTTTIAKLAAEQLFKHHRKVGFITSDTYRISAVEQLRTYATILNVPLEV 338 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 + D + A ++ + D++++DTAGR + N +L++ + + L P Sbjct: 339 VQSPGDV----HRAIQRLE--HCDLILMDTAGRNYRNELLVSELQSL------LSPINES 386 Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 VL T+ + + + G ++ TKMD T GG+ ++ H+ P+ + Sbjct: 387 ETYLVLSLTSKSKDMLNITGHFSKFGLGKVVFTKMDETGSCGGMFNLL--HQFPMQLAYI 444 Query: 292 GEGIN 296 G N Sbjct: 445 TNGQN 449 >gi|254226077|ref|ZP_04919675.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae V51] gi|125621389|gb|EAZ49725.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae V51] Length = 482 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 264 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 323 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 324 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 377 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 + I HS L VL AT + L++ +E F + +G IMTK+D G Sbjct: 378 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 424 Query: 276 IPIVVTHKIPVYFLGVGEGIND 297 + +VV + +PV ++ G+ + + Sbjct: 425 VSVVVQNALPVAYIANGQRVPE 446 >gi|229522027|ref|ZP_04411444.1| flagellar biosynthesis protein FlhF [Vibrio cholerae TM 11079-80] gi|229340952|gb|EEO05957.1| flagellar biosynthesis protein FlhF [Vibrio cholerae TM 11079-80] Length = 495 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 277 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 336 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 337 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 390 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 + I HS L VL AT + L++ +E F + +G IMTK+D G Sbjct: 391 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 437 Query: 276 IPIVVTHKIPVYFLGVGEGIND 297 + +VV + +PV ++ G+ + + Sbjct: 438 VSVVVQNALPVAYIANGQRVPE 459 >gi|153826085|ref|ZP_01978752.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae MZO-2] gi|149740202|gb|EDM54355.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae MZO-2] Length = 495 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 277 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 336 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 337 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 390 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 + I HS L VL AT + L++ +E F + +G IMTK+D G Sbjct: 391 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 437 Query: 276 IPIVVTHKIPVYFLGVGEGIND 297 + +VV + +PV ++ G+ + + Sbjct: 438 VSVVVQNALPVAYIANGQRVPE 459 >gi|323499561|ref|ZP_08104531.1| flagellar biosynthesis regulator FlhF [Vibrio sinaloensis DSM 21326] gi|323315434|gb|EGA68475.1| flagellar biosynthesis regulator FlhF [Vibrio sinaloensis DSM 21326] Length = 492 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 34/212 (16%) Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAA 154 +P+SK D R V+ ++G GVGKTT + KL+ + M V L DT+R A Sbjct: 268 IPISK---QDILKRGGVVALLGPTGVGKTTTVAKLAARAAMEWGADNVALVTTDTYRIGA 324 Query: 155 IDQLKIWADRTSADFVCS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHN 207 +QL I+ C+ ++ D+ LA + Q + ++++DTAG RL Sbjct: 325 HEQLAIYGRIMG----CAVKVAKDSKELADVIY---QLRNRRLILVDTAGMGQRDVRLSE 377 Query: 208 N-SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTK 265 LM G+MI HS L VL AT + L++ ++ F + +G IMTK Sbjct: 378 QLDTLMHESGEMI-----------HSYL-VLPATAQRKVLQETIDHFKRIP-LSGCIMTK 424 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 +D + G + +VV + +PV ++ G+ + + Sbjct: 425 LDESLSLGEFVSVVVQNALPVAYIANGQRVPE 456 >gi|229528914|ref|ZP_04418304.1| flagellar biosynthesis protein FlhF [Vibrio cholerae 12129(1)] gi|229332688|gb|EEN98174.1| flagellar biosynthesis protein FlhF [Vibrio cholerae 12129(1)] gi|327484602|gb|AEA79009.1| Flagellar biosynthesis protein FlhF [Vibrio cholerae LMA3894-4] Length = 495 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 277 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 336 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 337 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 390 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 + I HS L VL AT + L++ +E F + +G IMTK+D G Sbjct: 391 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 437 Query: 276 IPIVVTHKIPVYFLGVGEGIND 297 + +VV + +PV ++ G+ + + Sbjct: 438 VSVVVQNALPVAYIANGQRVPE 459 >gi|15642068|ref|NP_231700.1| flagellar biosynthesis regulator FlhF [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586913|ref|ZP_01676693.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae 2740-80] gi|121727367|ref|ZP_01680506.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae V52] gi|147673602|ref|YP_001217595.1| flagellar biosynthesis regulator FlhF [Vibrio cholerae O395] gi|153818371|ref|ZP_01971038.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae NCTC 8457] gi|153821677|ref|ZP_01974344.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae B33] gi|227082195|ref|YP_002810746.1| putative flagellar biosynthetic protein FlhF [Vibrio cholerae M66-2] gi|229507842|ref|ZP_04397347.1| flagellar biosynthesis protein FlhF [Vibrio cholerae BX 330286] gi|229511922|ref|ZP_04401401.1| flagellar biosynthesis protein FlhF [Vibrio cholerae B33] gi|229519058|ref|ZP_04408501.1| flagellar biosynthesis protein FlhF [Vibrio cholerae RC9] gi|229607387|ref|YP_002878035.1| flagellar biosynthesis regulator FlhF [Vibrio cholerae MJ-1236] gi|254849155|ref|ZP_05238505.1| flagellar biosynthesis regulator FlhF [Vibrio cholerae MO10] gi|255745187|ref|ZP_05419136.1| flagellar biosynthesis protein FlhF [Vibrio cholera CIRS 101] gi|262155954|ref|ZP_06029075.1| flagellar biosynthesis protein FlhF [Vibrio cholerae INDRE 91/1] gi|262167688|ref|ZP_06035391.1| flagellar biosynthesis protein FlhF [Vibrio cholerae RC27] gi|298497904|ref|ZP_07007711.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9656614|gb|AAF95214.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548849|gb|EAX58892.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae 2740-80] gi|121630259|gb|EAX62657.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae V52] gi|126511061|gb|EAZ73655.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae NCTC 8457] gi|126520775|gb|EAZ77998.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae B33] gi|146315485|gb|ABQ20024.1| putative flagellar biosynthetic protein FlhF [Vibrio cholerae O395] gi|227010083|gb|ACP06295.1| putative flagellar biosynthetic protein FlhF [Vibrio cholerae M66-2] gi|227013965|gb|ACP10175.1| putative flagellar biosynthetic protein FlhF [Vibrio cholerae O395] gi|229343747|gb|EEO08722.1| flagellar biosynthesis protein FlhF [Vibrio cholerae RC9] gi|229351887|gb|EEO16828.1| flagellar biosynthesis protein FlhF [Vibrio cholerae B33] gi|229355347|gb|EEO20268.1| flagellar biosynthesis protein FlhF [Vibrio cholerae BX 330286] gi|229370042|gb|ACQ60465.1| flagellar biosynthesis protein FlhF [Vibrio cholerae MJ-1236] gi|254844860|gb|EET23274.1| flagellar biosynthesis regulator FlhF [Vibrio cholerae MO10] gi|255737017|gb|EET92413.1| flagellar biosynthesis protein FlhF [Vibrio cholera CIRS 101] gi|262023893|gb|EEY42591.1| flagellar biosynthesis protein FlhF [Vibrio cholerae RC27] gi|262030265|gb|EEY48908.1| flagellar biosynthesis protein FlhF [Vibrio cholerae INDRE 91/1] gi|297542237|gb|EFH78287.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 495 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 277 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 336 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 337 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 390 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 + I HS L VL AT + L++ +E F + +G IMTK+D G Sbjct: 391 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 437 Query: 276 IPIVVTHKIPVYFLGVGEGIND 297 + +VV + +PV ++ G+ + + Sbjct: 438 VSVVVQNALPVAYIANGQRVPE 459 >gi|167538766|ref|XP_001751042.1| hypothetical protein [Monosiga brevicollis MX1] gi|163770451|gb|EDQ84147.1| predicted protein [Monosiga brevicollis MX1] Length = 111 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 44/79 (55%) Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 +DA+ G+ Q + F +I+TK+DG A+GGG + + + PV F+G GE I Sbjct: 1 MDASIGKACFDQAKAFKDTVDVGAVIVTKLDGHAKGGGALSAIAATRSPVIFIGTGERIE 60 Query: 297 DLEPFVAKDFSAVITGCLD 315 DLEPF + F + + G D Sbjct: 61 DLEPFAPRSFVSKLLGLGD 79 >gi|229513724|ref|ZP_04403186.1| flagellar biosynthesis protein FlhF [Vibrio cholerae TMA 21] gi|229348905|gb|EEO13862.1| flagellar biosynthesis protein FlhF [Vibrio cholerae TMA 21] Length = 495 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 277 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 336 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 337 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 390 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 + I HS L VL AT + L++ +E F + +G IMTK+D G Sbjct: 391 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 437 Query: 276 IPIVVTHKIPVYFLGVGEGIND 297 + +VV + +PV ++ G+ + + Sbjct: 438 VSVVVQNALPVAYIANGQRVPE 459 >gi|153828897|ref|ZP_01981564.1| putative flagellar biosynthetic protein FlhF [Vibrio cholerae 623-39] gi|148875603|gb|EDL73738.1| putative flagellar biosynthetic protein FlhF [Vibrio cholerae 623-39] Length = 455 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 237 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 296 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 297 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 350 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 + I HS L VL AT + L++ +E F + +G IMTK+D G Sbjct: 351 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 397 Query: 276 IPIVVTHKIPVYFLGVGEGIND 297 + +VV + +PV ++ G+ + + Sbjct: 398 VSVVVQNALPVAYIANGQRVPE 419 >gi|323493325|ref|ZP_08098448.1| flagellar biosynthesis regulator FlhF [Vibrio brasiliensis LMG 20546] gi|323312411|gb|EGA65552.1| flagellar biosynthesis regulator FlhF [Vibrio brasiliensis LMG 20546] Length = 492 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 99/211 (46%), Gaps = 32/211 (15%) Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAA 154 +P+SK D R V+ ++G GVGKTT + KL+ + M V L + DT+R A Sbjct: 268 IPISK---QDILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVSTDTYRIGA 324 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN 208 +QL I+ ++ + A + Y Q + ++++DTAG RL Sbjct: 325 HEQLAIYGRIMGCPVKVAKDSKELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQ 378 Query: 209 -SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKM 266 LM G+MI HS L VL AT + L++ ++ F + +G IMTK+ Sbjct: 379 LDTLMHESGEMI-----------HSYL-VLPATAQRKVLQETIDHFKRIP-LSGCIMTKL 425 Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 D + G + + V + +PV ++ G+ + + Sbjct: 426 DESLSLGEFVSVTVQNSLPVAYIANGQRVPE 456 >gi|261209998|ref|ZP_05924297.1| flagellar biosynthesis protein FlhF [Vibrio sp. RC341] gi|260840944|gb|EEX67481.1| flagellar biosynthesis protein FlhF [Vibrio sp. RC341] Length = 490 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 272 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 331 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 332 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 385 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 + I HS L VL AT + L++ +E F + +G IMTK+D G Sbjct: 386 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 432 Query: 276 IPIVVTHKIPVYFLGVGEGIND 297 + +VV + +PV ++ G+ + + Sbjct: 433 VSVVVQNALPVAYIANGQRVPE 454 >gi|229524076|ref|ZP_04413481.1| flagellar biosynthesis protein FlhF [Vibrio cholerae bv. albensis VL426] gi|229337657|gb|EEO02674.1| flagellar biosynthesis protein FlhF [Vibrio cholerae bv. albensis VL426] Length = 495 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 277 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 336 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 337 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLPEQLDTLMQESG 390 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 + I HS L VL AT + L++ +E F + +G IMTK+D G Sbjct: 391 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 437 Query: 276 IPIVVTHKIPVYFLGVGEGIND 297 + +VV + +PV ++ G+ + + Sbjct: 438 VSVVVQNALPVAYIANGQRVPE 459 >gi|85859185|ref|YP_461387.1| flagellar biosynthesis protein [Syntrophus aciditrophicus SB] gi|85722276|gb|ABC77219.1| flagellar biosynthesis protein [Syntrophus aciditrophicus SB] Length = 390 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 18/221 (8%) Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAA 154 L+ S PF V + +G GVGKTT + KLS + + K V L DT+R AA Sbjct: 180 LIGQSLPFVNHSEKEKRVKVFIGPTGVGKTTTLAKLSAYHALSKKKTVGLITTDTYRIAA 239 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK--KVDVLIIDTAGRLHNNSILM 212 ++QLK +A + D FKQ+ K DV+++DT GR N+ + + Sbjct: 240 VEQLKTYARIIGIPLRVAPRKDD--------FKQSLKKFADKDVILVDTPGRSSNDIVNL 291 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 + + +R P ++ T+ + ++ +V + + + +I+TK D + R Sbjct: 292 KKLNETLR------SDIPFESNLLISLTSSRESMMEVALRYRIFDYDRIILTKADESLRV 345 Query: 273 GGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312 G L ++ PV ++ G+ + +D+E + + +I G Sbjct: 346 GFLWDVLDRISKPVSYITNGQNVPHDIEEATPQKIARMIIG 386 >gi|153213697|ref|ZP_01948949.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae 1587] gi|254286812|ref|ZP_04961765.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae AM-19226] gi|262189765|ref|ZP_06048117.1| flagellar biosynthesis protein FlhF [Vibrio cholerae CT 5369-93] gi|297579574|ref|ZP_06941502.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|124115758|gb|EAY34578.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae 1587] gi|150423103|gb|EDN15051.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae AM-19226] gi|262034352|gb|EEY52740.1| flagellar biosynthesis protein FlhF [Vibrio cholerae CT 5369-93] gi|297537168|gb|EFH76001.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 495 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 277 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 336 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 337 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 390 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 + I HS L VL AT + L++ +E F + +G IMTK+D G Sbjct: 391 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 437 Query: 276 IPIVVTHKIPVYFLGVGEGIND 297 + +VV + +PV ++ G+ + + Sbjct: 438 VSVVVQNALPVAYIANGQRVPE 459 >gi|158429530|pdb|2PX0|A Chain A, Crystal Structure Of Flhf Complexed With GmppnpMG(2+) gi|158429531|pdb|2PX0|B Chain B, Crystal Structure Of Flhf Complexed With GmppnpMG(2+) gi|158429532|pdb|2PX0|C Chain C, Crystal Structure Of Flhf Complexed With GmppnpMG(2+) gi|158429533|pdb|2PX0|D Chain D, Crystal Structure Of Flhf Complexed With GmppnpMG(2+) gi|158429534|pdb|2PX0|E Chain E, Crystal Structure Of Flhf Complexed With GmppnpMG(2+) gi|158429535|pdb|2PX0|F Chain F, Crystal Structure Of Flhf Complexed With GmppnpMG(2+) gi|158429536|pdb|2PX0|G Chain G, Crystal Structure Of Flhf Complexed With GmppnpMG(2+) gi|158429537|pdb|2PX0|H Chain H, Crystal Structure Of Flhf Complexed With GmppnpMG(2+) gi|158429538|pdb|2PX3|A Chain A, Crystal Structure Of Flhf Complexed With GtpMG(2+) Length = 296 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/258 (26%), Positives = 113/258 (43%), Gaps = 33/258 (12%) Query: 50 EDLLIRSDIGVAVAQKIVEELLTKRYAKD---VSVQRVLYDVSELIHKMLMPLSKPFNWD 106 E LL + I + +++LL R++ + ++ + V+ + E++ ML K W Sbjct: 46 EKLLQETGIKESTKTNTLKKLL--RFSVEAGGLTEENVVGKLQEILCDMLPSADK---WQ 100 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 I++ G G GKTT + KL+ M + K+ DT+R AA++QLK +A+ Sbjct: 101 EPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELL 160 Query: 166 SADF-VCSEIGSDAAALAYEAFKQAQA--KKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 A VC E F+QA+ + D + +DTAGR + + I L Sbjct: 161 QAPLEVC---------YTKEEFQQAKELFSEYDHVFVDTAGRNFKDP-------QYIDEL 204 Query: 223 KRLDPHAPHSVLQ---VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 K P S +Q VL AT ++ + + I TK+D T G + I+ Sbjct: 205 KETIPF--ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNIL 262 Query: 280 VTHKIPVYFLGVGEGIND 297 KI V F+ G+ + + Sbjct: 263 AESKIGVGFMTNGQNVPE 280 >gi|189426334|ref|YP_001953511.1| GTP-binding signal recognition particle SRP54 G- domain [Geobacter lovleyi SZ] gi|189422593|gb|ACD96991.1| GTP-binding signal recognition particle SRP54 G- domain [Geobacter lovleyi SZ] Length = 441 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/202 (25%), Positives = 94/202 (46%), Gaps = 14/202 (6%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I +VG GVGKTT KL+ + + G KV L D FR A++QLK + T Sbjct: 246 PRIIALVGPTGVGKTTTTAKLAAMYALNRGNKVALITMDIFRVGAVEQLKTY---TKIMG 302 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + E+ S L + A D+++IDTAGR H +S + + + + D Sbjct: 303 IPLEVASTPKELERAVERHADC---DLILIDTAGRSHKDSDKLEEMKGFLETTIQSD--- 356 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 + L ATT L ++ ++ + ++ TK+D G ++ +++ + + + Sbjct: 357 ---IYLCLSATTKDRELEEILNRFSIFPISKVVFTKLDECESVGCIVNLLLKANLQIAYF 413 Query: 290 GVGEGI-NDLEPFVAKDFSAVI 310 G+ + D+E ++ + +I Sbjct: 414 TTGQRVPEDIEVATSEKLAELI 435 >gi|254506956|ref|ZP_05119095.1| flagellar biosynthetic protein FlhF [Vibrio parahaemolyticus 16] gi|219550241|gb|EED27227.1| flagellar biosynthetic protein FlhF [Vibrio parahaemolyticus 16] Length = 493 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 34/212 (16%) Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAA 154 +P+SK D R V+ ++G GVGKTT + KL+ + M V L DT+R A Sbjct: 269 IPISK---QDILKRGGVVALLGPTGVGKTTTVAKLAARAAMEWGADNVALVTTDTYRIGA 325 Query: 155 IDQLKIWADRTSADFVCS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHN 207 +QL I+ C+ ++ D+ LA + Q + ++++DTAG RL Sbjct: 326 HEQLAIYG----RIMGCAVKVAKDSKELADVIY---QLRNRRLILVDTAGMGQRDVRLSE 378 Query: 208 N-SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTK 265 LM G+MI HS L VL AT + L++ ++ F + +G IMTK Sbjct: 379 QLDTLMHESGEMI-----------HSYL-VLPATAQRKVLQETIDHFKRIP-LSGCIMTK 425 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 +D + G + +VV + +PV ++ G+ + + Sbjct: 426 LDESLSLGEFVSVVVQNALPVAYIANGQRVPE 457 >gi|16078703|ref|NP_389522.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis subsp. subtilis str. 168] gi|221309518|ref|ZP_03591365.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis subsp. subtilis str. 168] gi|221313842|ref|ZP_03595647.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318765|ref|ZP_03600059.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis subsp. subtilis str. JH642] gi|221323037|ref|ZP_03604331.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis subsp. subtilis str. SMY] gi|321315407|ref|YP_004207694.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis BSn5] gi|544314|sp|Q01960|FLHF_BACSU RecName: Full=Flagellar biosynthesis protein flhF; AltName: Full=Flagella-associated GTP-binding protein gi|39919|emb|CAA47062.1| flhF [Bacillus subtilis subsp. subtilis str. 168] gi|2634012|emb|CAB13513.1| GTPase involved in the export of flagella [Bacillus subtilis subsp. subtilis str. 168] gi|320021681|gb|ADV96667.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis BSn5] Length = 366 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/258 (26%), Positives = 113/258 (43%), Gaps = 33/258 (12%) Query: 50 EDLLIRSDIGVAVAQKIVEELLTKRYAKD---VSVQRVLYDVSELIHKMLMPLSKPFNWD 106 E LL + I + +++LL R++ + ++ + V+ + E++ ML K W Sbjct: 116 EKLLQETGIKESTKTNTLKKLL--RFSVEAGGLTEENVVGKLQEILCDMLPSADK---WQ 170 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 I++ G G GKTT + KL+ M + K+ DT+R AA++QLK +A+ Sbjct: 171 EPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELL 230 Query: 166 SADF-VCSEIGSDAAALAYEAFKQAQA--KKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 A VC E F+QA+ + D + +DTAGR + + I L Sbjct: 231 QAPLEVC---------YTKEEFQQAKELFSEYDHVFVDTAGRNFKDP-------QYIDEL 274 Query: 223 KRLDPHAPHSVLQ---VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 K P S +Q VL AT ++ + + I TK+D T G + I+ Sbjct: 275 KETIPF--ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNIL 332 Query: 280 VTHKIPVYFLGVGEGIND 297 KI V F+ G+ + + Sbjct: 333 AESKIGVGFMTNGQNVPE 350 >gi|299822257|ref|ZP_07054143.1| flagellar biosynthesis regulator FlhF [Listeria grayi DSM 20601] gi|299815786|gb|EFI83024.1| flagellar biosynthesis regulator FlhF [Listeria grayi DSM 20601] Length = 408 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 92/197 (46%), Gaps = 11/197 (5%) Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 P+ + +I ++G GVGKTT + KL ++ + G V DTFRS A++Q + + Sbjct: 197 PYRPVILKQQRIISLIGQTGVGKTTTLVKLGWQLLEQGETVGFITTDTFRSGAVEQFQGY 256 Query: 162 ADRTSADFVCSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 AD+ A+ + ++ + A+ Y F VD ++IDT GR + ++ +A + + Sbjct: 257 ADKLEAELIVAKSPEELKEAIDYLTF----VSGVDHILIDTVGRNYFDAETIAELDAYYQ 312 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 +++ P V +A + ++ + G I+TK+D TA G Sbjct: 313 IIQ------PDLTCFVFNANSSTADIQLILGKLENIPIDGFIVTKLDETALLGNYYRFTQ 366 Query: 281 THKIPVYFLGVGEGIND 297 P+ ++ G+ I++ Sbjct: 367 ELTQPILWVTDGQTISE 383 >gi|262166182|ref|ZP_06033919.1| flagellar biosynthesis protein FlhF [Vibrio mimicus VM223] gi|262025898|gb|EEY44566.1| flagellar biosynthesis protein FlhF [Vibrio mimicus VM223] Length = 493 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 275 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 334 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 335 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 388 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 + I HS L VL AT + L++ +E F + +G IMTK+D G Sbjct: 389 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 435 Query: 276 IPIVVTHKIPVYFLGVGEGIND 297 + +VV + +PV ++ G+ + + Sbjct: 436 VSVVVQNALPVAYIANGQRVPE 457 >gi|320155679|ref|YP_004188058.1| flagellar biosynthesis protein FlhF [Vibrio vulnificus MO6-24/O] gi|319930991|gb|ADV85855.1| flagellar biosynthesis protein FlhF [Vibrio vulnificus MO6-24/O] Length = 497 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 29/200 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT I KL+ + M V L DT+R A +QL I+ Sbjct: 279 DILKRGGVVALLGPTGVGKTTTIAKLAARAAMEYGANNVALVTTDTYRIGAHEQLSIYGR 338 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ S+ A + Y Q + ++++DTAG RL LM G Sbjct: 339 IMGCPVKVAKDSSELADVIY------QLRNRKLILVDTAGMGQRDVRLSEQLDTLMQESG 392 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 ++I HS L VL AT + L++ ++ F + +G I+TK+D + G Sbjct: 393 EVI-----------HSYL-VLPATAQRRVLQETIDHFRRIP-LSGCILTKLDESLSLGEF 439 Query: 276 IPIVVTHKIPVYFLGVGEGI 295 + +V+ + +PV ++ G+ + Sbjct: 440 VSVVIQNALPVAYIANGQRV 459 >gi|262404420|ref|ZP_06080975.1| flagellar biosynthesis protein FlhF [Vibrio sp. RC586] gi|262349452|gb|EEY98590.1| flagellar biosynthesis protein FlhF [Vibrio sp. RC586] Length = 496 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 278 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 337 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 338 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 391 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 + I HS L VL AT + L++ +E F + +G IMTK+D G Sbjct: 392 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 438 Query: 276 IPIVVTHKIPVYFLGVGEGIND 297 + +VV + +PV ++ G+ + + Sbjct: 439 VSVVVQNALPVAYIANGQRVPE 460 >gi|154316352|ref|XP_001557497.1| hypothetical protein BC1G_04107 [Botryotinia fuckeliana B05.10] gi|150845907|gb|EDN21100.1| hypothetical protein BC1G_04107 [Botryotinia fuckeliana B05.10] Length = 325 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 44/86 (51%) Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P + V+DA+ GQ A Q + F A +I+TK DG A GGG I V P+ F+ Sbjct: 10 PDQTVMVMDASIGQQAEAQSKAFKETADFGAIIITKTDGHASGGGAISAVAATHTPIIFI 69 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE + DLE F F + + G D Sbjct: 70 GTGEHMLDLEKFAPTQFVSKLLGMGD 95 >gi|37680650|ref|NP_935259.1| flagellar biosynthesis regulator FlhF [Vibrio vulnificus YJ016] gi|161501816|ref|NP_760823.2| flagellar biosynthesis regulator FlhF [Vibrio vulnificus CMCP6] gi|37199398|dbj|BAC95230.1| flagellar biosynthesis protein FlhF [Vibrio vulnificus YJ016] gi|319999286|gb|AAO10350.2| Flagellar biosynthesis protein flhF [Vibrio vulnificus CMCP6] Length = 497 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 29/200 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT I KL+ + M V L DT+R A +QL I+ Sbjct: 279 DILKRGGVVALLGPTGVGKTTTIAKLAARAAMEYGANNVALVTTDTYRIGAHEQLSIYGR 338 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ S+ A + Y Q + ++++DTAG RL LM G Sbjct: 339 IMGCPVKVAKDSSELADVIY------QLRNRKLILVDTAGMGQRDVRLSEQLDTLMQESG 392 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 ++I HS L VL AT + L++ ++ F + +G I+TK+D + G Sbjct: 393 EVI-----------HSYL-VLPATAQRRVLQETIDHFRRIP-LSGCILTKLDESLSLGEF 439 Query: 276 IPIVVTHKIPVYFLGVGEGI 295 + +V+ + +PV ++ G+ + Sbjct: 440 VSVVIQNALPVAYIANGQRV 459 >gi|302343747|ref|YP_003808276.1| flagellar biosynthetic protein FlhF [Desulfarculus baarsii DSM 2075] gi|301640360|gb|ADK85682.1| flagellar biosynthetic protein FlhF [Desulfarculus baarsii DSM 2075] Length = 366 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 13/183 (7%) Query: 116 VVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 +VG GVGKTT + KL+ + AGL+V L DTFR AA +QLK++ D + Sbjct: 169 LVGPTGVGKTTTVAKLAASFAMKAGLRVGLVTLDTFRIAAAEQLKVYG--RIMDLPTVVV 226 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 G A Y+ + + +D++++DT GR ++ +A + ++ + + H L Sbjct: 227 GG---AKEYQRAVE-ELSGLDLILVDTVGRAPGDADNLAELRSILSAHPQTERH-----L 277 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 + T + R +E F A+ L+ TK+D T+ G ++ V K+PV +L G+ Sbjct: 278 VLACPTRDADQKRIIEGF-ALFEPKSLVFTKLDETSVYGPILNQVARAKLPVSYLTTGQR 336 Query: 295 IND 297 + D Sbjct: 337 VPD 339 >gi|261252373|ref|ZP_05944946.1| flagellar biosynthesis protein FlhF [Vibrio orientalis CIP 102891] gi|260935764|gb|EEX91753.1| flagellar biosynthesis protein FlhF [Vibrio orientalis CIP 102891] Length = 490 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 96/202 (47%), Gaps = 29/202 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT I KL+ + M V L + DT+R A +QL I+ Sbjct: 272 DILKRGGVVALLGPTGVGKTTTIAKLAARAAMEYGSDNVALVSTDTYRIGAHEQLAIYGR 331 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 332 IMGCPVKVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQETG 385 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 ++I HS L VL AT + L++ ++ F + +G IMTK+D + G Sbjct: 386 EVI-----------HSYL-VLPATAQRKVLQETIDHFKRIP-LSGCIMTKLDESLSLGEF 432 Query: 276 IPIVVTHKIPVYFLGVGEGIND 297 + +VV + +PV ++ G+ + + Sbjct: 433 LSVVVQNALPVTYIANGQRVPE 454 >gi|258621165|ref|ZP_05716199.1| Flagellar biosynthesis protein flhF [Vibrio mimicus VM573] gi|258586553|gb|EEW11268.1| Flagellar biosynthesis protein flhF [Vibrio mimicus VM573] Length = 483 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 265 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 324 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 325 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 378 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 + I HS L VL AT + L++ +E F + +G IMTK+D G Sbjct: 379 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 425 Query: 276 IPIVVTHKIPVYFLGVGEGIND 297 + +VV + +PV ++ G+ + + Sbjct: 426 VSVVVQNALPVAYIANGQRVPE 447 >gi|291484194|dbj|BAI85269.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis subsp. natto BEST195] Length = 366 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 86/200 (43%), Gaps = 25/200 (12%) Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 W I++ G G GKTT + KL+ M + K+ DT+R AA++QLK +A+ Sbjct: 169 WQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAE 228 Query: 164 RTSADF-VCSEIGSDAAALAYEAFKQAQA--KKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A VC E F+QA+ + D + +DTAGR + + I Sbjct: 229 LLQAPLEVC---------YTKEEFQQAKELFSEYDHVFVDTAGRNFKDP-------QYID 272 Query: 221 VLKRLDPHAPHSVLQ---VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 LK P S +Q VL AT ++ + + I TK+D T G + Sbjct: 273 ELKETIPF--ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFTKIDETTSLGSVFN 330 Query: 278 IVVTHKIPVYFLGVGEGIND 297 I+ KI V F+ G+ + + Sbjct: 331 ILAESKIGVGFMTNGQNVPE 350 >gi|262170941|ref|ZP_06038619.1| flagellar biosynthesis protein FlhF [Vibrio mimicus MB-451] gi|261892017|gb|EEY38003.1| flagellar biosynthesis protein FlhF [Vibrio mimicus MB-451] Length = 493 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 275 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 334 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 335 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 388 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 + I HS L VL AT + L++ +E F + +G IMTK+D G Sbjct: 389 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 435 Query: 276 IPIVVTHKIPVYFLGVGEGIND 297 + +VV + +PV ++ G+ + + Sbjct: 436 VSVVVQNALPVAYIANGQRVPE 457 >gi|310641564|ref|YP_003946322.1| gtp-binding signal recognition srp54 g [Paenibacillus polymyxa SC2] gi|309246514|gb|ADO56081.1| GTP-binding signal recognition SRP54 G [Paenibacillus polymyxa SC2] Length = 481 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 17/186 (9%) Query: 113 VILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-V 170 ++ V G GVGKTT I KL+ +++ KV DT+R +A++QL+ +A + V Sbjct: 280 IVYVAGPTGVGKTTTIAKLAAEQLFKHHRKVGFITSDTYRISAVEQLRTYATILNVPLEV 339 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 G A+ + + D++++DTAGR + N +L++ + + L P Sbjct: 340 VQSPGDVQRAIQ-------RLEHCDLILMDTAGRNYRNELLVSELQSL------LSPINE 386 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 VL T+ + + + G ++ TKMD T GG+ ++ H+ P+ Sbjct: 387 SETYLVLSLTSKSRDMLNITGHFSKFGLGKVVFTKMDETGSCGGMFNLL--HQFPMQLAY 444 Query: 291 VGEGIN 296 + G N Sbjct: 445 ITNGQN 450 >gi|51246528|ref|YP_066412.1| flagellar biosynthesis protein (FlhF) [Desulfotalea psychrophila LSv54] gi|50877565|emb|CAG37405.1| related to flagellar biosynthesis protein (FlhF) [Desulfotalea psychrophila LSv54] Length = 430 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 29/220 (13%) Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAID 156 PL K N I +VG GVGKTT + KL+ K+S + + DT+R AA++ Sbjct: 229 PLLKEINEQ-----QCIALVGPTGVGKTTTLAKLAAAKLSSGSASIAMITIDTYRIAAVE 283 Query: 157 QLKIWAD--RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 QLK++ + D V + +++ L + + ++++IDTAGR + + Sbjct: 284 QLKVYGEIMNIPVDVVITPEQLESSLLRH--------RDCELILIDTAGRSPKDDFSIDE 335 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + +R ++ H VL T+ ++ L + G + TK+D ++ G Sbjct: 336 LANFLRPEFNIEKHL------VLSTTSRESELAETIRQFGRLGIDSTVYTKIDECSQLGV 389 Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 ++ + +K P+ ++ G+ V +DF + C+ Sbjct: 390 ILNTQLHNKTPISYMTNGQR-------VPEDFIDISPKCI 422 >gi|224370769|ref|YP_002604933.1| FlhF [Desulfobacterium autotrophicum HRM2] gi|223693486|gb|ACN16769.1| FlhF [Desulfobacterium autotrophicum HRM2] Length = 368 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 91/200 (45%), Gaps = 17/200 (8%) Query: 102 PFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQL 158 PF D PH VG GVGKTT I KL+ ++ G K V L + D++R A +QL Sbjct: 162 PFAEDQGVPGMPHAAAFVGPTGVGKTTTIAKLAARLKFQGKKNVGLISIDSYRMGAFEQL 221 Query: 159 KIWADRTSADFVC-SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 K + T +C D A E Q +DV++IDTAG +++ + Sbjct: 222 KSYG--TIMGVMCVPAYNRDDLVKALERMGQ-----MDVVLIDTAGHSPSDTP------R 268 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 M V LD SV VL TTG +R+ + + TK+D T + G ++ Sbjct: 269 MEEVAHVLDGGFKVSVHLVLSVTTGFFNMRESAKAFSALNPESYVFTKIDETRQCGKIMD 328 Query: 278 IVVTHKIPVYFLGVGEGIND 297 V ++P+ F+ G+ + + Sbjct: 329 QVGDLRLPISFVTNGQRVPE 348 >gi|258626711|ref|ZP_05721535.1| Flagellar biosynthesis protein flhF [Vibrio mimicus VM603] gi|258581007|gb|EEW05932.1| Flagellar biosynthesis protein flhF [Vibrio mimicus VM603] Length = 483 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 265 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 324 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 325 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 378 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 + I HS L VL AT + L++ +E F + +G IMTK+D G Sbjct: 379 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 425 Query: 276 IPIVVTHKIPVYFLGVGEGIND 297 + +VV + +PV ++ G+ + + Sbjct: 426 VSVVVQNALPVAYIANGQRVPE 447 >gi|299534766|ref|ZP_07048096.1| flagellar biosynthesis regulator FlhF [Lysinibacillus fusiformis ZC1] gi|298729854|gb|EFI70399.1| flagellar biosynthesis regulator FlhF [Lysinibacillus fusiformis ZC1] Length = 398 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 28/221 (12%) Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 S+ I ++G GVGKTT I K++ + + + K+ DT+R AAI+QLK +A Sbjct: 199 LSYERKYINILGPTGVGKTTTIAKMAARAVLEKKKKIGFITTDTYRIAAIEQLKTYAGLL 258 Query: 166 SADFVCSEIGSDAAALAYEA--FKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 A +AY A F+QA + +D++ IDTAGR + + + ++I Sbjct: 259 QA----------PVEIAYNATDFEQAIQRLSHLDLVFIDTAGRNYKEVKYVDDLQRLI-- 306 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 + D HA + VL TT + + V+ F + I TK+D T G +I +++ Sbjct: 307 --KFDDHAESYL--VLAMTTKERDMENIVDQFKQLP-IQKFIFTKIDETNSIGTMINLMI 361 Query: 281 TH-KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEK 320 + K Y+ E D+E D AV+ GEEK Sbjct: 362 KYNKGLAYYTNGQEVPEDIE---EADLEAVLNLFFQ-GEEK 398 >gi|83589643|ref|YP_429652.1| flagellar biosynthesis regulator FlhF [Moorella thermoacetica ATCC 39073] gi|83572557|gb|ABC19109.1| GTP-binding signal recognition particle SRP54, G-domain [Moorella thermoacetica ATCC 39073] Length = 392 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 17/184 (9%) Query: 117 VGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VG GVGKTT + K++ + S KV L DT+R A+DQL+ +A+ Sbjct: 195 VGPTGVGKTTTLAKVAARHSLYLEQKVGLITLDTYRIGAVDQLRTYAEIMGLPLEV---- 250 Query: 176 SDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 A+ F++A + + D++++DTAGR N ++A + L+ + A + V Sbjct: 251 ----AMTPREFREALGRLEDRDIILVDTAGRAPENKAMLA---ETRGFLEAMPEGAVYLV 303 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L AT Q+ L+ VE F + LI TK+D T+ G ++ + +P+ ++ G+ Sbjct: 304 LS--SATRRQDLLQAVERFRPL-NYNRLIFTKLDETSCPGVMVTVAAAAGVPLAYVTAGQ 360 Query: 294 GIND 297 + D Sbjct: 361 DVPD 364 >gi|15639700|ref|NP_219150.1| flagellar-associated GTP-binding protein (flhF) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025938|ref|YP_001933710.1| flagellar-associated GTP-binding protein [Treponema pallidum subsp. pallidum SS14] gi|3913684|sp|Q56339|FLHF_TREPA RecName: Full=Flagellar biosynthesis protein flhF; AltName: Full=Flagella-associated GTP-binding protein gi|1216384|gb|AAB00551.1| flhF [Treponema pallidum] gi|3323015|gb|AAC65679.1| flagellar-associated GTP-binding protein (flhF) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018513|gb|ACD71131.1| flagellar-associated GTP-binding protein [Treponema pallidum subsp. pallidum SS14] gi|291060078|gb|ADD72813.1| flagellar biosynthetic protein FlhF [Treponema pallidum subsp. pallidum str. Chicago] Length = 437 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 16/189 (8%) Query: 114 ILVVGVNGVGKTTVIGKLS-------KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 I++VG GVGKTT + KL+ K + +V + D FR A Q++ + + Sbjct: 220 IVLVGPTGVGKTTTLAKLAAFYFVTEPKRTGIQPRVKIITTDNFRIGAAFQMERYCELMG 279 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 D + + L Y Q ++ DV+ +DT GR + + + + R +K + Sbjct: 280 LDLCV--VQAPVEFLTYMTLYQ---QETDVVFVDTEGRSPVDGQNIERMVEYFRAVKNFE 334 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 V +DA + N LR+V +A+ LI+TK+D T G LI + + P+ Sbjct: 335 ----LEVYLTIDAGSKANDLREVFKQYALFEYRALIVTKLDETTSIGNLISALSEARTPI 390 Query: 287 YFLGVGEGI 295 ++ G+ + Sbjct: 391 TYITTGQTV 399 >gi|296330855|ref|ZP_06873330.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674373|ref|YP_003866045.1| the export of flagella GTPase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151860|gb|EFG92734.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412617|gb|ADM37736.1| GTPase involved in the export of flagella [Bacillus subtilis subsp. spizizenii str. W23] Length = 366 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 88/210 (41%), Gaps = 26/210 (12%) Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 W I++ G G GKTT + KL+ M + K+ DT+R AA++QLK +A+ Sbjct: 169 WQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKQKKIAFITTDTYRIAAVEQLKTYAE 228 Query: 164 RTSADF-VCSEIGSDAAALAYEAFKQAQA--KKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A VC E F+QA+ + D + IDTAGR + I Sbjct: 229 LLQAPLEVC---------YTKEEFQQAKELFSEYDHVFIDTAGRNFKEQ-------QYID 272 Query: 221 VLKRLDPHAPHSVLQ---VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 LK P S +Q VL AT ++ + + I TK+D T G + Sbjct: 273 ELKETIPF--ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQFIFTKIDETTSLGSVFN 330 Query: 278 IVVTHKIPVYFLGVGEGI-NDLEPFVAKDF 306 I+ KI F+ G+ + D++ DF Sbjct: 331 ILAESKIGAGFITNGQNVPEDIQTVSPLDF 360 >gi|152997432|ref|YP_001342267.1| GTP-binding signal recognition particle [Marinomonas sp. MWYL1] gi|150838356|gb|ABR72332.1| GTP-binding signal recognition particle SRP54 G- domain [Marinomonas sp. MWYL1] Length = 427 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 107/221 (48%), Gaps = 31/221 (14%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 I +G GVGKTT IGK++ + + V+L DT+R AA +QL+ + + V Sbjct: 221 CIAFMGPTGVGKTTTIGKIAAQHVLKHGSEGVVLITTDTYRIAAHEQLRTFGRILN---V 277 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVD--VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 E+ ++ Y + AK + ++++DTAG +S + + + ++KR Sbjct: 278 PVEVVNE-----YSDLNEVLAKYANYSLVLVDTAGMNPRDS----NLERQLLMMKRA--R 326 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 A L VL T+ + L+ V ++ G +++K+D +A G I +V+ +PV + Sbjct: 327 ASLKKLLVLPCTSQRQVLKTVVDVYSQVQLDGCVLSKLDESASLGEAISVVIEEGLPVVY 386 Query: 289 LGVGEGI-NDLEP-----------FVAKDFSAVITGCLDYG 317 + G+ I +D+EP + A+ +S + G L YG Sbjct: 387 IADGQRIPDDIEPARAHNLISRAVYTAEHYSQ-LYGSLKYG 426 >gi|315648118|ref|ZP_07901219.1| flagellar biosynthetic protein FlhF [Paenibacillus vortex V453] gi|315276764|gb|EFU40107.1| flagellar biosynthetic protein FlhF [Paenibacillus vortex V453] Length = 479 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 60/257 (23%), Positives = 116/257 (45%), Gaps = 28/257 (10%) Query: 49 LEDLLIRSDIGVAVAQK---IVEELLTKRYAK--DVSVQRVLY-DVSELIHKMLMPLSKP 102 L DLL++ D+ + ++ EE T + + D +Q V+Y + I + +P Sbjct: 223 LRDLLLKQDLSAKLTEEWLMAAEEAWTANHMQLSDAELQDVIYKQAAAFIEGRIGGGVQP 282 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 ++ + G GVGKTT I K+ ++++ KV DT+R +A++QL+ + Sbjct: 283 -------ETRIVYIAGPTGVGKTTTIAKIAAEQLFRHQRKVGFITSDTYRISAVEQLRTY 335 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 A + + D A ++ Q D++++DTAGR + N +L++ Sbjct: 336 ASILNVPMEVVQSPGDMQ----RALQKLQ--DCDLILMDTAGRNYRNELLVSE------- 382 Query: 222 LKRLDPHAPHS-VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 L+ L H+ S VL T+ + + ++ +I TKMD T G + ++ Sbjct: 383 LQSLFSHSDQSETYLVLSLTSKSSDMIEIADHFNKYALDKVIFTKMDETGSYGSMFNLID 442 Query: 281 THKIPVYFLGVGEGIND 297 H + + ++ G+ + D Sbjct: 443 AHDLRLSYMTNGQNVPD 459 >gi|152992634|ref|YP_001358355.1| flagellar biosynthesis protein FlhF [Sulfurovum sp. NBC37-1] gi|151424495|dbj|BAF71998.1| flagellar biosynthesis protein FlhF [Sulfurovum sp. NBC37-1] Length = 362 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 18/197 (9%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAAGDTFRSAAIDQLKIWA 162 D H ++++VG GVGKTT I KL+ + + D KV L D+++ AI+QL +A Sbjct: 158 DLDHS-KIMMLVGPTGVGKTTTIAKLAARYAYLLDRPYKVALINLDSYKVGAIEQLAHYA 216 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 D + S +DA EA D++++DTAG ++ K ++ + Sbjct: 217 DIMQIEH-YSIASADAFGEKIEALSS-----YDIILVDTAGMSPYDT------QKFVKTI 264 Query: 223 KRLDPHAPH--SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 + ++ P V VL AT + + + +I++K D T G L+ ++ Sbjct: 265 EFVNTKIPKKIEVALVLAATVKYEDMEDIHENFSFLNLDSVIISKFDETKHFGTLLNFML 324 Query: 281 THKIPVYFLGVGEGIND 297 + +P+ + G+ + D Sbjct: 325 LYDLPMSYFSTGQEVPD 341 >gi|261407963|ref|YP_003244204.1| flagellar biosynthetic protein FlhF [Paenibacillus sp. Y412MC10] gi|261284426|gb|ACX66397.1| flagellar biosynthetic protein FlhF [Paenibacillus sp. Y412MC10] Length = 479 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 17/189 (8%) Query: 112 HVILVVGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF- 169 ++ V G GVGKTT I K+ ++++ KV DT+R +A++QL+ +A + Sbjct: 285 RIVYVAGPTGVGKTTTIAKIAAEQLFRNQRKVGFITSDTYRISAVEQLRTYASILNVPME 344 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V G AL + + D++++DTAGR + N +L++ L+ L H+ Sbjct: 345 VVQSPGDMQRAL-------QKLQDCDLVLMDTAGRNYRNELLVSE-------LQSLFSHS 390 Query: 230 PHS-VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 S VL T+ + + ++ + +I TKMD T G L ++ H + + + Sbjct: 391 DQSETYLVLSLTSKSSDMIEIADHFSKYELDKVIFTKMDETGSYGALFNLIDAHNLRLSY 450 Query: 289 LGVGEGIND 297 + G+ + D Sbjct: 451 MTNGQNVPD 459 >gi|262393603|ref|YP_003285457.1| flagellar biosynthesis protein FlhF [Vibrio sp. Ex25] gi|262337197|gb|ACY50992.1| flagellar biosynthesis protein FlhF [Vibrio sp. Ex25] Length = 505 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 29/200 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 287 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 346 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 347 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 400 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 ++I HS L VL AT + L++ ++ F + +G IMTK+D + G Sbjct: 401 EVI-----------HSYL-VLPATAQRRVLQETLDHFRRIP-LSGCIMTKLDESLSLGEF 447 Query: 276 IPIVVTHKIPVYFLGVGEGI 295 I +V+ + +PV ++ G+ + Sbjct: 448 ISVVIQNAMPVAYIANGQRV 467 >gi|91223560|ref|ZP_01258825.1| flagellar biosynthesis regulator FlhF [Vibrio alginolyticus 12G01] gi|91191646|gb|EAS77910.1| flagellar biosynthesis regulator FlhF [Vibrio alginolyticus 12G01] Length = 505 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 29/200 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 287 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 346 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 347 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 400 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 ++I HS L VL AT + L++ ++ F + +G IMTK+D + G Sbjct: 401 EVI-----------HSYL-VLPATAQRRVLQETLDHFRRIP-LSGCIMTKLDESLSLGEF 447 Query: 276 IPIVVTHKIPVYFLGVGEGI 295 I +V+ + +PV ++ G+ + Sbjct: 448 ISVVIQNAMPVAYIANGQRV 467 >gi|329929326|ref|ZP_08283079.1| flagellar biosynthesis protein FlhF [Paenibacillus sp. HGF5] gi|328936695|gb|EGG33138.1| flagellar biosynthesis protein FlhF [Paenibacillus sp. HGF5] Length = 479 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 90/188 (47%), Gaps = 15/188 (7%) Query: 112 HVILVVGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 ++ V G GVGKTT I K+ ++++ KV DT+R +A++QL+ +A + Sbjct: 285 RIVYVAGPTGVGKTTTIAKIAAEQLFRNQRKVGFITSDTYRISAVEQLRTYASILNVPME 344 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + D A ++ Q D++++DTAGR + N +L++ L+ L H+ Sbjct: 345 VVQSPGDMQ----RALQKLQ--DCDLVLMDTAGRNYRNELLVSE-------LQSLFSHSD 391 Query: 231 HS-VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 S VL T+ + + ++ + +I TKMD T G L ++ H + + ++ Sbjct: 392 QSETYLVLSLTSKSSDMIEIADHFSKYELDKVIFTKMDETGSYGALFNLIDAHNLRLSYM 451 Query: 290 GVGEGIND 297 G+ + D Sbjct: 452 TNGQNVPD 459 >gi|62241192|dbj|BAD93654.1| putative GTP-binding protein [Vibrio alginolyticus] Length = 505 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 29/200 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 287 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 346 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 347 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 400 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 ++I HS L VL AT + L++ ++ F + +G IMTK+D + G Sbjct: 401 EVI-----------HSYL-VLPATAQRRVLQETLDHFRRIP-LSGCIMTKLDESLSLGEF 447 Query: 276 IPIVVTHKIPVYFLGVGEGI 295 I +V+ + +PV ++ G+ + Sbjct: 448 ISVVIQNAMPVAYIANGQRV 467 >gi|254228446|ref|ZP_04921872.1| SRP54-type protein, GTPase domain [Vibrio sp. Ex25] gi|151939034|gb|EDN57866.1| SRP54-type protein, GTPase domain [Vibrio sp. Ex25] Length = 495 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 29/200 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 277 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 336 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 337 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 390 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 ++I HS L VL AT + L++ ++ F + +G IMTK+D + G Sbjct: 391 EVI-----------HSYL-VLPATAQRRVLQETLDHFRRIP-LSGCIMTKLDESLSLGEF 437 Query: 276 IPIVVTHKIPVYFLGVGEGI 295 I +V+ + +PV ++ G+ + Sbjct: 438 ISVVIQNAMPVAYIANGQRV 457 >gi|194015091|ref|ZP_03053708.1| flagellar biosynthetic protein FlhF [Bacillus pumilus ATCC 7061] gi|194014117|gb|EDW23682.1| flagellar biosynthetic protein FlhF [Bacillus pumilus ATCC 7061] Length = 371 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 21/193 (10%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 R I++ G G GKTT I KL+ K + K+ DT+R AAI+QLK +A+ +A Sbjct: 179 RSKYIVLFGSTGAGKTTTIAKLAAKTAIQKQKKIAFITTDTYRIAAIEQLKTYAELLNAP 238 Query: 169 F-VCSEIGSDAAALAYEAFKQAQA--KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 VC + E F +AQ K+ D + +DTAGR + + +I + + Sbjct: 239 LEVC---------YSREDFVKAQETFKEYDHIFVDTAGRNFKEEAYIKELTDIIPFNESI 289 Query: 226 DPHAPHSVLQVLDATTG-QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 S L V+ AT+ Q+ V+ F V I TK+D T G + I+ +I Sbjct: 290 -----QSFL-VMSATSKYQDMKAMVKRFEHVP-IDQFIFTKVDETDTMGTIFQIIADSQI 342 Query: 285 PVYFLGVGEGIND 297 + FL G+ + + Sbjct: 343 GLGFLTNGQNVPE 355 >gi|269965688|ref|ZP_06179801.1| Flagellar biosynthesis protein flhF [Vibrio alginolyticus 40B] gi|269829756|gb|EEZ83992.1| Flagellar biosynthesis protein flhF [Vibrio alginolyticus 40B] Length = 495 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 29/200 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 277 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 336 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 337 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 390 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 ++I HS L VL AT + L++ ++ F + +G IMTK+D + G Sbjct: 391 EVI-----------HSYL-VLPATAQRRVLQETLDHFRRIP-LSGCIMTKLDESLSLGEF 437 Query: 276 IPIVVTHKIPVYFLGVGEGI 295 I +V+ + +PV ++ G+ + Sbjct: 438 ISVVIQNAMPVAYIANGQRV 457 >gi|154249074|ref|YP_001409899.1| flagellar biosynthesis regulator FlhF [Fervidobacterium nodosum Rt17-B1] gi|154153010|gb|ABS60242.1| GTP-binding signal recognition particle SRP54 G- domain [Fervidobacterium nodosum Rt17-B1] Length = 372 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 73/266 (27%), Positives = 122/266 (45%), Gaps = 23/266 (8%) Query: 35 IISSRRLDDGV-REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH 93 +ISS+R ++ E L + DI ++ K++E K D S + +SE Sbjct: 102 MISSQRTNEPQWVESFRKALKKQDIDDEISDKLIEYSKMKYQELDFSNENTRLILSE--- 158 Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRS 152 M +P D R +L G GVGKTT + KL+ K+ + K V + DT+R Sbjct: 159 -MFLPFINTSVPDLKGR---VLFAGPTGVGKTTTLAKLAAKLKLSEKKRVAVITLDTYRI 214 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA-KKVDVLIIDTAGRLHNNSIL 211 AA+DQLK +A + ++ A EA + +A DV++IDTAGR N + Sbjct: 215 AAVDQLKTYA-------MLLDVPIRVAYTPKEAKLEVEALSDYDVILIDTAGRSQKNDLH 267 Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271 M+ I M ++ +P V+ +++V ++ T +I++KMD T+ Sbjct: 268 MSEIKAMSEIV------SPDFTFLVIGMQYRSEDVKEVLTKFSMISPTHVILSKMDETSA 321 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGIND 297 G + + K P+ F+ G+ + D Sbjct: 322 LGHFVNVPNFLKAPIAFITNGQRVPD 347 >gi|253573539|ref|ZP_04850882.1| GTP-binding signal recognition particle SRP54 G [Paenibacillus sp. oral taxon 786 str. D14] gi|251847067|gb|EES75072.1| GTP-binding signal recognition particle SRP54 G [Paenibacillus sp. oral taxon 786 str. D14] Length = 472 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 64/262 (24%), Positives = 113/262 (43%), Gaps = 38/262 (14%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 ++ L+ ++G +A + VEE+ Y +S + L D M L N Sbjct: 216 IQQQLMSQEVGPELADRWVEEV----YEAWLSSGKTLSD-----DDMQARLRTIVNSFLD 266 Query: 109 HR--------PHVILVVGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 HR ++ + G GVGKTT I KL + ++ KV DT+R +AI+QL+ Sbjct: 267 HRIDAGIGDQTRIVYIAGPTGVGKTTTIAKLAADQIFRLHKKVGFITADTYRISAIEQLR 326 Query: 160 IWADRTSADF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 +A + V G A+ + + D++++DTAGR + N + +A + + Sbjct: 327 TYATILNVPLEVVQSPGDVQRAM-------QRLEHCDLILMDTAGRNYLNELFVAELHSL 379 Query: 219 IRVLKRLDPHAPHSVLQ---VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 + AP V + VL T+ ++++ + LI TK+D T G + Sbjct: 380 L---------APSDVSETYLVLSLTSKAQDMKRITEHFSKYNLDKLIFTKLDETETTGAI 430 Query: 276 IPIVVTHKIPVYFLGVGEGIND 297 ++ + V FL G+ + D Sbjct: 431 FNLLNEYPFKVSFLTNGQNVPD 452 >gi|258404722|ref|YP_003197464.1| flagellar biosynthetic protein FlhF [Desulfohalobium retbaense DSM 5692] gi|257796949|gb|ACV67886.1| flagellar biosynthetic protein FlhF [Desulfohalobium retbaense DSM 5692] Length = 437 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 97/203 (47%), Gaps = 14/203 (6%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P I +VG GVGKTT I KL+ + + G ++L D FR AA +QL+++A+ + Sbjct: 237 PKRIALVGPTGVGKTTTIAKLAAQYLRRYGQGLLLVTMDNFRIAAAEQLRVYAEIMN--- 293 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V E+ + A + ++ + KK +++ID+AGR + M + + + D H Sbjct: 294 VPLEVVTSAEQM-RTVMQRHEDKK--LMLIDSAGRNPRDESGMQELHAFLGDSQLFDKHL 350 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 VL ATT ++ + GLI TK+D T G ++ + P+ +L Sbjct: 351 ------VLSATTRDEDMQSIVDRFGDLEINGLIFTKIDETQSYGSIVNVQHRTGCPLTYL 404 Query: 290 GVGEGI-NDLEPFVAKDFSAVIT 311 G+ + DL P + S +IT Sbjct: 405 TNGQRVPEDLLPADSVQLSQLIT 427 >gi|304311115|ref|YP_003810713.1| Flagellar biosynthetic protein [gamma proteobacterium HdN1] gi|301796848|emb|CBL45060.1| Flagellar biosynthetic protein [gamma proteobacterium HdN1] Length = 523 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 110/252 (43%), Gaps = 34/252 (13%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112 L R I + +++V +L + S++ + V + +HK L F+ D R Sbjct: 254 LHRMGIAAPICRRLVNQLPSS------SIREGMRVVLQRLHKEL----SIFSPDIRERGG 303 Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD--RTSAD 168 ++ ++G GVGKTT I K++ M +V L D++R A +QLK R Sbjct: 304 IVALLGPAGVGKTTSISKIAAAYAMKHGVDEVALVTTDSYRIAGHEQLKTLGKILRVPMR 363 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRL 225 V E L E Q K +++IDTAG H + M +G + R + RL Sbjct: 364 VVTEEY---PLTLVLE-----QLKNKKLILIDTAGLSHRDQDFEEQMKILGGLPRQITRL 415 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 VL +T+ + L + + G G I+TK+D A G + +VV ++P Sbjct: 416 ---------LVLASTSQKRILEKAVEDYQPLGLDGCILTKLDECASLGEALSVVVEARLP 466 Query: 286 VYFLGVGEGIND 297 V + G+ I D Sbjct: 467 VAYTTDGQNIPD 478 >gi|187478178|ref|YP_786202.1| flagellar biosynthesis regulator FlhF [Bordetella avium 197N] gi|115422764|emb|CAJ49292.1| flagellar biosynthesis protein [Bordetella avium 197N] Length = 818 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 71/285 (24%), Positives = 130/285 (45%), Gaps = 35/285 (12%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPF 103 RE + L RS + + +V LL +R ++ R + +E++ + P+ + Sbjct: 175 TREPVNASLFRSLLEAGFSMPLVRALL-ERLPPEIDAARARDWARNEVLTHL--PVLRDE 231 Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIW 161 N F V+ ++G GVGKTT + KL+ + + +V + D FR A++QL+I+ Sbjct: 232 N-AFLAAGGVLALLGPTGVGKTTTLAKLAARCVAREGRDQVAMLTTDNFRIGALEQLQIY 290 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNNSILMAGI 215 V + DAA L +A + ++K+ ++IDT G + + L+ G Sbjct: 291 GRLMG---VPARSVRDAAEL-RDALAELGSRKI--ILIDTTGISQRDRNVAEQAALLCGG 344 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE--MFHAVA-GTTGLIMTKMDGTARG 272 G+ +R L VL+A + + L +V H V G I+TK+D R Sbjct: 345 GRQVRRLL------------VLNAASQGDTLDEVAHAYRHGVGEDVVGCIITKLDEATRL 392 Query: 273 GGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITGCLDY 316 G + + H++P++++ G+ + +L P A+ CLD+ Sbjct: 393 GPALDTAIRHRLPIHYISNGQKVPENLVPAQAQPLVDHALACLDH 437 >gi|167633397|ref|ZP_02391722.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis str. A0442] gi|170686090|ref|ZP_02877312.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis str. A0465] gi|254683273|ref|ZP_05147134.1| flagellar biosynthesis regulator FlhF [Bacillus anthracis str. CNEVA-9066] gi|254741035|ref|ZP_05198723.1| flagellar biosynthesis regulator FlhF [Bacillus anthracis str. Kruger B] gi|167531435|gb|EDR94113.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis str. A0442] gi|170669787|gb|EDT20528.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis str. A0465] Length = 435 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 58/241 (24%), Positives = 107/241 (44%), Gaps = 19/241 (7%) Query: 62 VAQKIVEELLTKRYAKDVSV--QRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVV 117 + Q VE+ YA+ + V + E+I +L +S FN + F I ++ Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEVIEYILEDMSSHFNTENVFEKEVQTIALI 246 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 G GVGKTT + K++ + V D R + QL+ + + + + + Sbjct: 247 GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRDE 304 Query: 178 AA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 AA AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + L Sbjct: 305 AAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYICL 355 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 356 TLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQD 414 Query: 295 I 295 + Sbjct: 415 V 415 >gi|206603137|gb|EDZ39617.1| flagellar biosynthesis protein FlhF [Leptospirillum sp. Group II '5-way CG'] Length = 393 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 21/193 (10%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VIL+ G GVGKTT I KL+ + G KV L DT+R A++QL+I+ D Sbjct: 196 QVILLAGPTGVGKTTTIAKLAAGFTLKHGKKVRLINLDTYRIGALEQLRIYGDLMG---- 251 Query: 171 CSEIGSDAAALAYEAFKQAQAKKV---DVLIIDTAGRLHNNSILMAGI--GKMIRVLKRL 225 + D A + +A V D++++DTAG + + G + R Sbjct: 252 ---LPVDVAGTPERFLEILEAGSVSPEDLILVDTAGMSSRETAKLKPFIDGALSR----- 303 Query: 226 DPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 PH +V VL A+ + L +E F ++ LI+TK+D T G + P + + Sbjct: 304 -PHLDLNVSLVLAASAKTDDLDDALERFMPLS-LRSLILTKLDETNCLGSVYPFLSRAPV 361 Query: 285 PVYFLGVGEGIND 297 PV ++ G+ + D Sbjct: 362 PVSYVTTGQRVPD 374 >gi|217959254|ref|YP_002337802.1| flagellar biosynthesis regulator FlhF [Bacillus cereus AH187] gi|229138472|ref|ZP_04267061.1| hypothetical protein bcere0013_15890 [Bacillus cereus BDRD-ST26] gi|217066646|gb|ACJ80896.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus AH187] gi|228645009|gb|EEL01252.1| hypothetical protein bcere0013_15890 [Bacillus cereus BDRD-ST26] Length = 436 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 58/242 (23%), Positives = 108/242 (44%), Gaps = 20/242 (8%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + V+ + E+I +L +S FN + F I + Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIKYILEDMSSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ + + + + Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304 Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +AA AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414 Query: 294 GI 295 + Sbjct: 415 DV 416 >gi|228945374|ref|ZP_04107729.1| hypothetical protein bthur0007_15370 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814346|gb|EEM60612.1| hypothetical protein bthur0007_15370 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 436 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 58/242 (23%), Positives = 108/242 (44%), Gaps = 20/242 (8%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + V+ + E+I +L +S FN + F I + Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMSSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ + + + + Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304 Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +AA AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414 Query: 294 GI 295 + Sbjct: 415 DV 416 >gi|165869383|ref|ZP_02214042.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis str. A0488] gi|167638723|ref|ZP_02396998.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis str. A0193] gi|177650348|ref|ZP_02933315.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis str. A0174] gi|190566480|ref|ZP_03019398.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis Tsiankovskii-I] gi|227815456|ref|YP_002815465.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis str. CDC 684] gi|254734626|ref|ZP_05192338.1| flagellar biosynthesis regulator FlhF [Bacillus anthracis str. Western North America USA6153] gi|254755278|ref|ZP_05207312.1| flagellar biosynthesis regulator FlhF [Bacillus anthracis str. Vollum] gi|164714823|gb|EDR20341.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis str. A0488] gi|167513187|gb|EDR88558.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis str. A0193] gi|172083492|gb|EDT68552.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis str. A0174] gi|190562615|gb|EDV16582.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis Tsiankovskii-I] gi|227005419|gb|ACP15162.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis str. CDC 684] Length = 435 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 58/241 (24%), Positives = 107/241 (44%), Gaps = 19/241 (7%) Query: 62 VAQKIVEELLTKRYAKDVSV--QRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVV 117 + Q VE+ YA+ + V + E+I +L +S FN + F I ++ Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEVIEYILEDMSSHFNTENVFEKEVQTIALI 246 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 G GVGKTT + K++ + V D R + QL+ + + + + + Sbjct: 247 GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRDE 304 Query: 178 AA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 AA AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + L Sbjct: 305 AAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYICL 355 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 356 TLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQD 414 Query: 295 I 295 + Sbjct: 415 V 415 >gi|157165253|ref|YP_001467216.1| flagellar biosynthesis regulator FlhF [Campylobacter concisus 13826] gi|112802034|gb|EAT99378.1| flagellar biosynthesis protein [Campylobacter concisus 13826] Length = 452 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 61/247 (24%), Positives = 104/247 (42%), Gaps = 35/247 (14%) Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 A+ Q +E L + +V+R Y L+ ML P K + ++++VG Sbjct: 205 AIMQTTLENLPVSMKSNPTAVKRYFYS---LLRNML-PCRKELG---DKKQRIMMLVGPT 257 Query: 121 GVGKTTVIGKLSKKM---SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 GVGKTT + KL+ + ++ K + DT+R A++QL +A + Sbjct: 258 GVGKTTTLAKLAARFAYGNEKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPIL------- 310 Query: 178 AAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 + E F+ A Q DV++IDT G + L+RLD HS + Sbjct: 311 -DVIEVEDFQNAIKQLSYCDVILIDTTGNSQYDK----------EKLERLDKFLKHSGAK 359 Query: 236 V---LDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 + L + G +E+++ + LI+TK D T G + ++ PV + Sbjct: 360 IDVNLVLSAGSKVEDLIEIYNGFSFLQIDTLIITKFDETKIFGNVFSLIYETNTPVSYFS 419 Query: 291 VGEGIND 297 VG+ + D Sbjct: 420 VGQEVPD 426 >gi|326796450|ref|YP_004314270.1| flagellar biosynthetic protein FlhF [Marinomonas mediterranea MMB-1] gi|326547214|gb|ADZ92434.1| flagellar biosynthetic protein FlhF [Marinomonas mediterranea MMB-1] Length = 432 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 22/220 (10%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D +H I +G GVGKTT IGK++ + + + V+L DT+R AA +QL+ + Sbjct: 219 DMAHMSGCIAFMGPTGVGKTTSIGKIAAQHVLKNGADSVVLVTTDTYRIAAHEQLRTFGR 278 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG---RLHNNSILMAGIGKMIR 220 + V E+ ++ + L K + ++++DTAG R N + + K Sbjct: 279 ILN---VPVEVVNEYSDLNEVLDKYS---NYSLVLVDTAGMNPRDRNLERQLKMMQKARG 332 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 LK+L VL T+ + L+ V ++ G +++K+D +A G I +V+ Sbjct: 333 YLKKL---------LVLPCTSQRQVLKTVVDVYSQIQLDGCVLSKIDESASLGEAISVVI 383 Query: 281 THKIPVYFLGVGEGI-NDLEPFVAKDF-SAVITGCLDYGE 318 +PV ++ G+ I +D+EP A + S + YG+ Sbjct: 384 EEGLPVMYVADGQRIPDDIEPARAHNLISRAVYTAEQYGQ 423 >gi|254723856|ref|ZP_05185642.1| flagellar biosynthesis regulator FlhF [Bacillus anthracis str. A1055] gi|301053309|ref|YP_003791520.1| flagellar biosynthesis protein [Bacillus anthracis CI] gi|300375478|gb|ADK04382.1| flagellar biosynthesis protein [Bacillus cereus biovar anthracis str. CI] Length = 436 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 58/242 (23%), Positives = 108/242 (44%), Gaps = 20/242 (8%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + V+ + E+I +L +S FN + F I + Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMSSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ + + + + Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304 Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +AA AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414 Query: 294 GI 295 + Sbjct: 415 DV 416 >gi|148976428|ref|ZP_01813134.1| flagellar biosynthesis regulator FlhF [Vibrionales bacterium SWAT-3] gi|145964251|gb|EDK29507.1| flagellar biosynthesis regulator FlhF [Vibrionales bacterium SWAT-3] Length = 493 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 95/200 (47%), Gaps = 25/200 (12%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R ++ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 275 DILKRGGIVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 334 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 ++ S+ A + Y Q + ++++DTAG + +R+ + Sbjct: 335 IMGCPVRVAKDSSELADVIY------QLRNRRLILVDTAGMGQRD----------VRLSE 378 Query: 224 RLDP--HAPHSVLQ---VLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 +LD SV+ VL AT + L++ +E F + +G IMTK+D + G I Sbjct: 379 QLDTLMQESGSVINSYLVLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDESLSLGEFIS 437 Query: 278 IVVTHKIPVYFLGVGEGIND 297 +V+ + +PV ++ G+ + + Sbjct: 438 VVIQNALPVAYIANGQRVPE 457 >gi|47565440|ref|ZP_00236481.1| flagellar biosynthetic protein flhF, putative [Bacillus cereus G9241] gi|47557430|gb|EAL15757.1| flagellar biosynthetic protein flhF, putative [Bacillus cereus G9241] Length = 433 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 58/242 (23%), Positives = 108/242 (44%), Gaps = 20/242 (8%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + V+ + E+I +L +S FN + F I + Sbjct: 184 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMSSHFNTENVFEKEVQTIAL 243 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ + + + + Sbjct: 244 IGPTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 301 Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +AA AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + Sbjct: 302 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 352 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 353 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 411 Query: 294 GI 295 + Sbjct: 412 DV 413 >gi|251772427|gb|EES52994.1| flagellar biosynthesis protein FlhF [Leptospirillum ferrodiazotrophum] Length = 396 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 97/199 (48%), Gaps = 26/199 (13%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGL------KVMLAAGDTFRSAAIDQLKIWAD 163 RP V+L VG GVGKTT + K+ AGL +V L DT+R A++QL+I+ D Sbjct: 191 RPKVVLFVGPTGVGKTTTVAKIG-----AGLVARHKKRVGLLNLDTYRIGAVEQLRIYGD 245 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 V E+ + A+ L+ + ++ DV+++D+AGR G +++ L Sbjct: 246 LMG---VPVEVANTASRLSGAIGRLSEN---DVILVDSAGRSDG------GGEELLPFLS 293 Query: 224 RLDPHAPHSVLQVLDATTGQNA--LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 L + + VL + GQ A L + + L++TK+D T G L ++ Sbjct: 294 VLSSGQEYDLSVVLVVSAGQKARDLERTATAYQKIRPEALVVTKIDETGALGSLYGLLAH 353 Query: 282 HKIPVYFLGVGEGI-NDLE 299 ++PV ++ G+ + D+E Sbjct: 354 GRLPVSYVTTGQKVPEDIE 372 >gi|49184610|ref|YP_027862.1| flagellar biosynthesis regulator FlhF [Bacillus anthracis str. Sterne] gi|65319053|ref|ZP_00392012.1| COG1419: Flagellar GTP-binding protein [Bacillus anthracis str. A2012] gi|254759815|ref|ZP_05211839.1| flagellar biosynthesis regulator FlhF [Bacillus anthracis str. Australia 94] gi|49178537|gb|AAT53913.1| flagellar biosynthetic protein FlhF, putative [Bacillus anthracis str. Sterne] Length = 281 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 19/239 (7%) Query: 64 QKIVEELLTKRYAKDVSV--QRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGV 119 Q VE+ YA+ + V + E+I +L +S FN + F I ++G Sbjct: 35 QNDVEQYFIHAYAEKLKVKFENATMITEEVIEYILEDMSSHFNTENVFEKEVQTIALIGP 94 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 GVGKTT + K++ + V D R + QL+ + + + + +AA Sbjct: 95 TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRDEAA 152 Query: 180 ---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + L + Sbjct: 153 MTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYICLTL 203 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 + ++ + + F + G++ TK D TA G L+ I P+ + G+ + Sbjct: 204 SASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 261 >gi|153836967|ref|ZP_01989634.1| flagellar biosynthesis protein FlhF [Vibrio parahaemolyticus AQ3810] gi|161511052|ref|NP_798613.2| flagellar biosynthesis regulator FlhF [Vibrio parahaemolyticus RIMD 2210633] gi|260365246|ref|ZP_05777803.1| flagellar biosynthetic protein FlhF [Vibrio parahaemolyticus K5030] gi|260878796|ref|ZP_05891151.1| flagellar biosynthetic protein FlhF [Vibrio parahaemolyticus AN-5034] gi|260897391|ref|ZP_05905887.1| flagellar biosynthetic protein FlhF [Vibrio parahaemolyticus Peru-466] gi|149749740|gb|EDM60485.1| flagellar biosynthesis protein FlhF [Vibrio parahaemolyticus AQ3810] gi|308088246|gb|EFO37941.1| flagellar biosynthetic protein FlhF [Vibrio parahaemolyticus Peru-466] gi|308094264|gb|EFO43959.1| flagellar biosynthetic protein FlhF [Vibrio parahaemolyticus AN-5034] gi|308115462|gb|EFO53002.1| flagellar biosynthetic protein FlhF [Vibrio parahaemolyticus K5030] gi|328474455|gb|EGF45260.1| flagellar biosynthesis regulator FlhF [Vibrio parahaemolyticus 10329] Length = 503 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 29/200 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 285 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 344 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 345 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 398 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 ++I HS L VL AT + L++ ++ F + +G I+TK+D + G Sbjct: 399 EVI-----------HSYL-VLPATAQRRVLQETLDHFRRIP-LSGCILTKLDESLSLGEF 445 Query: 276 IPIVVTHKIPVYFLGVGEGI 295 I +V+ + +PV ++ G+ + Sbjct: 446 ISVVIQNAMPVAYIANGQRV 465 >gi|324325789|gb|ADY21049.1| flagellar biosynthesis regulator FlhF [Bacillus thuringiensis serovar finitimus YBT-020] Length = 436 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 58/242 (23%), Positives = 108/242 (44%), Gaps = 20/242 (8%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + V+ + E+I +L +S FN + F I + Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFESATMITEEEVIEYILEDMSSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ + + + + Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304 Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +AA AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414 Query: 294 GI 295 + Sbjct: 415 DV 416 >gi|6952811|gb|AAF32412.1| flagellar biosynthesis protein FlhF [Vibrio parahaemolyticus] Length = 503 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 29/200 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 285 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 344 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 345 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 398 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 ++I HS L VL AT + L++ ++ F + +G I+TK+D + G Sbjct: 399 EVI-----------HSYL-VLPATAQRRVLQETLDHFRRIP-LSGCILTKLDESLSLGEF 445 Query: 276 IPIVVTHKIPVYFLGVGEGI 295 I +V+ + +PV ++ G+ + Sbjct: 446 ISVVIQNAMPVAYIANGQRV 465 >gi|152975185|ref|YP_001374702.1| flagellar biosynthesis regulator FlhF [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023937|gb|ABS21707.1| GTP-binding signal recognition particle SRP54 G- domain [Bacillus cytotoxicus NVH 391-98] Length = 434 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 15/192 (7%) Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 F I ++G GVGKTT I K++ ++ V D R + QL+ + Sbjct: 235 FEKDVQTIALIGPTGVGKTTTIAKMAWQLHGQKKTVGFITTDHSRIGTVQQLQEYVKAIG 294 Query: 167 ADFVCSEIGSDAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 A+ + + +AA AL Y FK + ++D + IDTAG+ N + +MI ++K Sbjct: 295 AEVIA--VRDEAAMERALTY--FK--EEVRMDYIFIDTAGQ---NYRTAETVAEMIEMMK 345 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 R++ P S+ L A+ + ++ G+I TK D TA G L+ I Sbjct: 346 RVN---PDSICLTLSASMKSKDMIEIITNFKEIHIDGIIFTKFDETASSGELLKIPAVSS 402 Query: 284 IPVYFLGVGEGI 295 P+ + G+ + Sbjct: 403 APIVLMTDGQDV 414 >gi|332284012|ref|YP_004415923.1| flagellar biosynthesis regulator FlhF [Pusillimonas sp. T7-7] gi|330427965|gb|AEC19299.1| flagellar biosynthesis regulator FlhF [Pusillimonas sp. T7-7] Length = 769 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 36/210 (17%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGL-KVMLAAGDTFRSAAIDQLKIWAD 163 D R I +VG GVGKTT I KL+ + + AG ++L DT+R A +QLKI+ Sbjct: 157 DLWARGRAIALVGPTGVGKTTTIAKLAARCVRRAGPDSLVLLTTDTYRIGAHEQLKIYGQ 216 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKV---DVLIIDTAG---RLH---NNSILMAG 214 V + D L QA ++V L+ID G R H + ++AG Sbjct: 217 MMR---VPVHVAQDVDEL------QAIIRQVHPDQTLLIDNVGISQRDHYIAEQAAMLAG 267 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT---GLIMTKMDGTAR 271 G+ P S L VL+AT+ + L +V + G + G I+TK+D +R Sbjct: 268 AGR------------PVSRLLVLNATSHGDTLDEVARSYVNDGGSPLAGCIITKVDEASR 315 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGI-NDLEP 300 G + + +++P++F+ +G+ + DL P Sbjct: 316 TGASLDTALRYQLPIHFVSIGQKVPEDLMP 345 >gi|30261776|ref|NP_844153.1| flagellar biosynthesis regulator FlhF [Bacillus anthracis str. Ames] gi|30256004|gb|AAP25639.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis str. Ames] Length = 270 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 19/239 (7%) Query: 64 QKIVEELLTKRYAKDVSV--QRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGV 119 Q VE+ YA+ + V + E+I +L +S FN + F I ++G Sbjct: 24 QNDVEQYFIHAYAEKLKVKFENATMITEEVIEYILEDMSSHFNTENVFEKEVQTIALIGP 83 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 GVGKTT + K++ + V D R + QL+ + + + + +AA Sbjct: 84 TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRDEAA 141 Query: 180 ---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + L + Sbjct: 142 MTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYICLTL 192 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 + ++ + + F + G++ TK D TA G L+ I P+ + G+ + Sbjct: 193 SASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 250 >gi|332295034|ref|YP_004436957.1| GTP-binding signal recognition particle SRP54 G- domain protein [Thermodesulfobium narugense DSM 14796] gi|332178137|gb|AEE13826.1| GTP-binding signal recognition particle SRP54 G- domain protein [Thermodesulfobium narugense DSM 14796] Length = 352 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 84/207 (40%), Gaps = 33/207 (15%) Query: 102 PFNWDFSHRPHV--ILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQL 158 PF F+ R + +G G GKTT I K++ +MS K V L DTFR AA+DQL Sbjct: 140 PF---FNERDETSALAFLGPTGAGKTTTIAKIAARMSLLMKKRVCLITLDTFRIAALDQL 196 Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG--RLHNN------SI 210 K +AD F + + + + + +DV +IDT G +N + Sbjct: 197 KAYADIMDLPFFVAHSPKELKEVV-----KKEKSSIDVFLIDTMGFSPFQDNKFKEISAF 251 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 L GI I + VL A L + +I TK+D Sbjct: 252 LSTGINTEIHL--------------VLCANYKSQELGHYINKYKTLNPVSIIWTKLDEVI 297 Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGIND 297 G +I + + + +P+ G G+ + D Sbjct: 298 SLGHIIELSIENNLPISLFGTGQSVPD 324 >gi|149188100|ref|ZP_01866395.1| flagellar biosynthesis regulator FlhF [Vibrio shilonii AK1] gi|148838088|gb|EDL55030.1| flagellar biosynthesis regulator FlhF [Vibrio shilonii AK1] Length = 506 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 29/193 (15%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 ++ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 295 IVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVR 354 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIGKMIRVLK 223 ++ + A + Y Q + +++IDTAG RL LM G++I Sbjct: 355 VAKDSEELADVLY------QLRNRRLVLIDTAGMGQRDVRLSEQLDTLMQESGEVI---- 404 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 HS L VL AT + L++ ++ F + +G IMTK+D + G I +VV + Sbjct: 405 -------HSYL-VLPATAQRQVLQETLDHFRRIP-LSGCIMTKLDESLSLGEFISVVVQN 455 Query: 283 KIPVYFLGVGEGI 295 +PV ++ G+ + Sbjct: 456 ALPVTYIANGQRV 468 >gi|28807227|dbj|BAC60497.1| flagellar biosynthesis protein FlhF [Vibrio parahaemolyticus RIMD 2210633] Length = 489 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 29/200 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 271 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 330 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 331 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 384 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 ++I HS L VL AT + L++ ++ F + +G I+TK+D + G Sbjct: 385 EVI-----------HSYL-VLPATAQRRVLQETLDHFRRIP-LSGCILTKLDESLSLGEF 431 Query: 276 IPIVVTHKIPVYFLGVGEGI 295 I +V+ + +PV ++ G+ + Sbjct: 432 ISVVIQNAMPVAYIANGQRV 451 >gi|229160733|ref|ZP_04288725.1| hypothetical protein bcere0009_15230 [Bacillus cereus R309803] gi|228622748|gb|EEK79582.1| hypothetical protein bcere0009_15230 [Bacillus cereus R309803] Length = 435 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/245 (24%), Positives = 109/245 (44%), Gaps = 30/245 (12%) Query: 64 QKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118 Q VE+ YA+ + V+ + E+I +L + FN + F + I ++G Sbjct: 188 QNDVEQYFIHAYAEKLKVKFEKATMITEEEVIEYILEDMKSHFNTENVFEKKVQTIALIG 247 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 GVGKTT + K++ + V D R + QL+ D+V + IGS+ Sbjct: 248 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ--------DYVKT-IGSEV 298 Query: 179 AALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 A+ E+ FK + +VD ++IDTAG+ + S + +MI + +++P Sbjct: 299 IAVRDESAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP--D 351 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 + L + + ++ + + F + G++ TK D TA G L+ I P+ + Sbjct: 352 YICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMT 410 Query: 291 VGEGI 295 G+ + Sbjct: 411 DGQDV 415 >gi|70943991|ref|XP_741976.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56520694|emb|CAH80619.1| hypothetical protein PC000130.04.0 [Plasmodium chabaudi chabaudi] Length = 201 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 46/93 (49%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 +VIL VG+ G GKTT K + G K L DTFR+ A DQLK A + F Sbjct: 102 NVILFVGLQGSGKTTTCTKYAHYYQKKGFKTALICADTFRAGAFDQLKQNAAKVKIPFYG 161 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 S D +A + K D++I+D++GR Sbjct: 162 SYSEVDPVKIATDGVNAFLKDKYDLIIVDSSGR 194 >gi|145631516|ref|ZP_01787284.1| Signal recognition particle protein [Haemophilus influenzae R3021] gi|144982861|gb|EDJ90378.1| Signal recognition particle protein [Haemophilus influenzae R3021] Length = 180 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 11/159 (6%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72 F + S +L + + +I RL +D ++E L ++ L+ +D+ + V + K+ E L Sbjct: 2 FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61 Query: 73 KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K ++ Q L V + K + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNLA-TQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +K + + KV++ + D +R AAI QL+ A DF Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDF 159 >gi|260776435|ref|ZP_05885330.1| flagellar biosynthesis protein FlhF [Vibrio coralliilyticus ATCC BAA-450] gi|260607658|gb|EEX33923.1| flagellar biosynthesis protein FlhF [Vibrio coralliilyticus ATCC BAA-450] Length = 493 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 101/210 (48%), Gaps = 34/210 (16%) Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAA 154 +P+SK D R V+ ++G GVGKTT + KL+ + M V L DT+R A Sbjct: 269 IPISK---QDILKRGGVVALLGPTGVGKTTTVAKLAARAAMEFGSDNVALVTTDTYRIGA 325 Query: 155 IDQLKIWADRTSADFVCS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHN 207 +QL I+ C+ ++ D+ LA + Q + ++++DTAG RL Sbjct: 326 HEQLSIYGRIMG----CAVKVAKDSKELADVIY---QLRNRRLILVDTAGMGQRDVRLSE 378 Query: 208 N-SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTK 265 LM G++I HS L VL AT + L++ ++ F + +G I+TK Sbjct: 379 QLDTLMHESGEVI-----------HSYL-VLPATAQRKVLQETIDHFKRIP-LSGCILTK 425 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 +D + G + +VV + +PV ++ G+ + Sbjct: 426 LDESLSLGEFVSVVVQNSLPVAYIANGQRV 455 >gi|78485090|ref|YP_391015.1| flagellar biosynthesis regulator FlhF [Thiomicrospira crunogena XCL-2] gi|78363376|gb|ABB41341.1| Flagellar biosynthesis component FlhF [Thiomicrospira crunogena XCL-2] Length = 388 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/258 (23%), Positives = 121/258 (46%), Gaps = 28/258 (10%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112 L++ IG +AQ++V ++ D + VL + + ++P+ + D Sbjct: 123 LVKLGIGWDLAQRLVSDV---NANNDQAWSEVLASI-----EAMLPVD---DRDIIESGG 171 Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF- 169 ++ +VG GVGKTT I K++ + M ++ ++ L D ++ A QLK +AD Sbjct: 172 IVALVGPTGVGKTTTIAKMASRFVMRNSSSQIALVTTDCYKIGAQAQLKTFADLMGVPVH 231 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V + G + L+ A K+ +++IDTAG + +L + K L + + Sbjct: 232 VVNSEGEMYSLLSSLATKK-------LILIDTAGISQKDILLTQQLTKQKAGLNHIRNYL 284 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 V+ A T + ++ + G G I+TK+D + G ++ +++ +++ + +L Sbjct: 285 ------VMSAATQLSVMKDIVRSFDQVGLKGCILTKVDEALQLGNILTVLIENQLSLSYL 338 Query: 290 GVGEGI-NDLEPFVAKDF 306 G+ + DLEP A+D Sbjct: 339 SGGQRVPEDLEPVKARDL 356 >gi|309804278|ref|ZP_07698355.1| signal recognition particle protein [Lactobacillus iners LactinV 11V1-d] gi|308163681|gb|EFO65951.1| signal recognition particle protein [Lactobacillus iners LactinV 11V1-d] Length = 128 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 49/91 (53%) Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 +D P +++ V DA TGQ A E F++ TGLI+TK+DG RGG + I + Sbjct: 7 VDVAHPENIILVADAMTGQVAATVAEGFNSKLKLTGLILTKLDGDTRGGAALSIREVTGL 66 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ F G GE + +L+ F ++ I G D Sbjct: 67 PILFTGQGEKLTELDTFHPDRMASRILGMGD 97 >gi|260772377|ref|ZP_05881293.1| flagellar biosynthesis protein FlhF [Vibrio metschnikovii CIP 69.14] gi|260611516|gb|EEX36719.1| flagellar biosynthesis protein FlhF [Vibrio metschnikovii CIP 69.14] Length = 488 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 15/195 (7%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 270 DILQRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALITTDTYRIGAHEQLSIYGR 329 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + D+ LA + Q + +++ +++DTAG + + + + L Sbjct: 330 IMGCPV---RVAKDSKELA-DVIHQLRNRRL--ILVDTAGMGQRD----VRLSEQLDTLM 379 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 + HS L VL AT + L++ +E F + +G IMTK+D G + +VV + Sbjct: 380 QESDEVIHSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEFVSVVVQN 437 Query: 283 KIPVYFLGVGEGIND 297 +PV ++ G+ + + Sbjct: 438 ALPVAYIANGQRVPE 452 >gi|205356447|ref|ZP_03223211.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205345634|gb|EDZ32273.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 484 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 14/193 (7%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 + ++++VG GVGKTT + KL+ + + D K + DT+R A++QL +A Sbjct: 281 KQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKL 340 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + S D EA K +V+++DT G N+ + + K L + Sbjct: 341 PIIDSIEPKDLD----EAIKSLN--NCEVILVDTIG---NSQYDQSKLAKTKEFL--MHS 389 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 +A V V+ A T Q L ++ + LI+TK D T G + +V IP+ Sbjct: 390 NAEIDVNLVVSANTKQEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLS 449 Query: 288 FLGVGEGI-NDLE 299 F +G+ + +DLE Sbjct: 450 FFSIGQEVPDDLE 462 >gi|57237074|ref|YP_178086.1| flagellar biosynthesis regulator FlhF [Campylobacter jejuni RM1221] gi|57165878|gb|AAW34657.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni RM1221] gi|315057505|gb|ADT71834.1| Flagellar biosynthesis protein FlhF [Campylobacter jejuni subsp. jejuni S3] Length = 484 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 14/193 (7%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 + ++++VG GVGKTT + KL+ + + D K + DT+R A++QL +A Sbjct: 281 KQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKL 340 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + S D EA K +V+++DT G N+ + + K L + Sbjct: 341 PIIDSIEPKDLD----EAIKSLN--NCEVILVDTIG---NSQYDQSKLAKTKEFL--MHS 389 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 +A V V+ A T Q L ++ + LI+TK D T G + +V IP+ Sbjct: 390 NAEIDVNLVVSANTKQEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLS 449 Query: 288 FLGVGEGI-NDLE 299 F +G+ + +DLE Sbjct: 450 FFSIGQEVPDDLE 462 >gi|308173603|ref|YP_003920308.1| GTPase [Bacillus amyloliquefaciens DSM 7] gi|307606467|emb|CBI42838.1| GTPase involved in the export of flagella [Bacillus amyloliquefaciens DSM 7] gi|328553465|gb|AEB23957.1| flagellar biosynthesis regulator FlhF [Bacillus amyloliquefaciens TA208] gi|328911744|gb|AEB63340.1| GTPase involved in the export of flagella [Bacillus amyloliquefaciens LL3] Length = 363 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 109/252 (43%), Gaps = 21/252 (8%) Query: 50 EDLLIRSDIGVAVAQKIVEELLTKRYAK-DVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 E LL ++ + ++ ELL A D++ + V + +L+ K L + W Sbjct: 113 ERLLKQAGLPDHTQNAVLSELLRSSIASGDLTDENVNSKLQDLLVKKLPSADR---WQEG 169 Query: 109 HRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 + +++ G G GKTT + KL+ M K+ DT+R AA++QLK +A+ A Sbjct: 170 IQSKYVVLFGSTGAGKTTTLAKLAASSMLTEHKKIAFMTTDTYRIAAVEQLKTYAELLQA 229 Query: 168 DF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 VC + A E F + D + IDTAGR + + +MI L Sbjct: 230 PLEVC--YSKEECLKAQEKFAE-----YDHVFIDTAGRNFKEEQYITELQEMIPFDSGL- 281 Query: 227 PHAPHSVLQVLDATTGQNALRQV-EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 S L VL A+ ++QV + F V I TK D TA G + ++ +I Sbjct: 282 ----QSFL-VLSASAKYEDMKQVLKQFSGVP-VNQFIFTKADETASLGSVFQLLSESRIG 335 Query: 286 VYFLGVGEGIND 297 +L G+ + + Sbjct: 336 AAYLTNGQDVPE 347 >gi|269961635|ref|ZP_06175997.1| Flagellar biosynthesis protein flhF [Vibrio harveyi 1DA3] gi|269833676|gb|EEZ87773.1| Flagellar biosynthesis protein flhF [Vibrio harveyi 1DA3] Length = 493 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 29/200 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 275 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEFGADNVALVTTDTYRIGAHEQLSIYGR 334 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 335 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 388 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 ++I HS L VL AT + L++ ++ F + +G I+TK+D + G Sbjct: 389 EVI-----------HSYL-VLPATAQRRVLQETLDHFRRIP-LSGCILTKLDESLSLGEF 435 Query: 276 IPIVVTHKIPVYFLGVGEGI 295 I +V+ + +PV ++ G+ + Sbjct: 436 ISVVIQNAMPVAYIANGQRV 455 >gi|156975415|ref|YP_001446322.1| flagellar biosynthesis regulator FlhF [Vibrio harveyi ATCC BAA-1116] gi|156527009|gb|ABU72095.1| hypothetical protein VIBHAR_03146 [Vibrio harveyi ATCC BAA-1116] Length = 503 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 29/200 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 285 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEFGADNVALVTTDTYRIGAHEQLSIYGR 344 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ ++ A + Y Q + ++++DTAG RL LM G Sbjct: 345 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 398 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 ++I HS L VL AT + L++ ++ F + +G I+TK+D + G Sbjct: 399 EVI-----------HSYL-VLPATAQRRVLQETLDHFRRIP-LSGCILTKLDESLSLGEF 445 Query: 276 IPIVVTHKIPVYFLGVGEGI 295 I +V+ + +PV ++ G+ + Sbjct: 446 ISVVIQNAMPVAYIANGQRV 465 >gi|67624587|ref|XP_668576.1| signal recognition particle protein SRP54 [Cryptosporidium hominis TU502] gi|54659796|gb|EAL38359.1| signal recognition particle protein SRP54 [Cryptosporidium hominis] Length = 296 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 44/86 (51%) Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P V+ V+D+ GQ Q F +I+TK+DG A+GGG + V P+ F+ Sbjct: 10 PDDVVFVMDSHIGQACYDQAMAFCNAVDVGSVIITKLDGHAKGGGALSAVAATGAPIIFI 69 Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315 G GE ++ EPF K F + + G D Sbjct: 70 GTGEHFDEFEPFETKGFVSRLLGLGD 95 >gi|327441035|dbj|BAK17400.1| flagellar GTP-binding protein [Solibacillus silvestris StLB046] Length = 396 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 14/194 (7%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 S+ I V+G GVGKTT I K++ + + + K+ DT+R AAI+QLK +A Sbjct: 194 SYEKKYINVLGPTGVGKTTTIAKMAARAVLEKKKKIGFITTDTYRIAAIEQLKTYAALLQ 253 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 A +D A A + F +D++ IDTAGR + + + + +I+ ++++ Sbjct: 254 APVEVVYNPTDYAE-ALQKFDH-----LDLIFIDTAGRNYKEAKYVDDLKSLIQFSEQVE 307 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH-KIP 285 + VL T+ Q L + A I TK+D T G + +++ + K Sbjct: 308 SYL------VLSLTSKQKDLESIIEQFANLHIEKFIFTKLDETNSIGTMFNLMIKYNKGL 361 Query: 286 VYFLGVGEGINDLE 299 Y+ E D+E Sbjct: 362 AYYTNGQEVPEDIE 375 >gi|304438445|ref|ZP_07398385.1| flagellar biosynthesis protein FlhF [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368528|gb|EFM22213.1| flagellar biosynthesis protein FlhF [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 466 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 20/165 (12%) Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA--FKQAQAK-- 192 + LK L DT+R +A++QLK +A EI + Y A K+A A+ Sbjct: 301 EQNLKGALITADTYRISAVEQLKKYA----------EILGLPVEVVYSATDLKKAIARHR 350 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 D +++DTAGR N M + ++ R++ H L V T Q+A++ +E F Sbjct: 351 SKDFVLVDTAGRSQYNEFQMEELTSLLAAYARMEKH-----LVVSATTKEQDAVQIIERF 405 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 A +I TKMD T G ++ ++ +P+ FL G+ + D Sbjct: 406 -APCKPDCIIFTKMDETQTFGMVLNLLANRGLPLSFLSNGQSVPD 449 >gi|229166626|ref|ZP_04294378.1| hypothetical protein bcere0007_15970 [Bacillus cereus AH621] gi|228616880|gb|EEK73953.1| hypothetical protein bcere0007_15970 [Bacillus cereus AH621] Length = 436 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/240 (24%), Positives = 107/240 (44%), Gaps = 20/240 (8%) Query: 64 QKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118 Q VE+ YA+ + V+ + E+I +L + FN + F I ++G Sbjct: 189 QNDVEQYFIHAYAEKLKVKFENATMITEEEVIGYILEDMRSHFNTENVFEKEVQTIALIG 248 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 GVGKTT + K++ + V D R + QL+ + A+ + + +A Sbjct: 249 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGAEVIA--VRDEA 306 Query: 179 A---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 A AL Y FK+ + VD ++IDTAG+ + S + +MI + +++P + L Sbjct: 307 AMTRALTY--FKEEAS--VDYILIDTAGKNYRTS---ETVEEMIETMGQVEP--DYICLT 357 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 + + ++ + + F + G++ TK D TA G L+ I P+ + G+ + Sbjct: 358 LSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416 >gi|169831893|ref|YP_001717875.1| flagellar biosynthesis regulator FlhF [Candidatus Desulforudis audaxviator MP104C] gi|169638737|gb|ACA60243.1| GTP-binding signal recognition particle SRP54, G- domain [Candidatus Desulforudis audaxviator MP104C] Length = 413 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 15/202 (7%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 ++ VG GVGKTT + K++ + + G + DT+R A++QL I+A+ Sbjct: 217 IMAFVGPTGVGKTTTLAKMAAQYTLFHGKSCAIITIDTYRIGAVEQLNIYAEIMGVPLEI 276 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 + D A +A ++ Q K + + +DTAGR NS +A + VL P Sbjct: 277 AMSPQDFA----KAVQRHQNK--EFIFVDTAGRPARNSEKVAELHSYFAVLDE-----PA 325 Query: 232 SVLQVLDATTG-QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 V+ VL + T ++ LR V F V + LI TK+D T G ++ ++ +PV + Sbjct: 326 DVILVLSSNTKHRDLLRAVRHFGKV-NYSKLIFTKVDETDTLGCILNMICHTGMPVIQIT 384 Query: 291 VGEGI-NDLEPFVAKDFSAVIT 311 G+ + +D++ K + ++T Sbjct: 385 DGQNVPDDIQNMYPKKLAKLLT 406 >gi|42780863|ref|NP_978110.1| flagellar biosynthesis regulator FlhF [Bacillus cereus ATCC 10987] gi|42736783|gb|AAS40718.1| flagellar biosynthetic protein FlhF, putative [Bacillus cereus ATCC 10987] Length = 436 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 20/242 (8%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + V+ + E+I +L ++ FN + F I + Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMTSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ + + + + Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304 Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +AA AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414 Query: 294 GI 295 + Sbjct: 415 DV 416 >gi|320354337|ref|YP_004195676.1| flagellar biosynthetic protein FlhF [Desulfobulbus propionicus DSM 2032] gi|320122839|gb|ADW18385.1| flagellar biosynthetic protein FlhF [Desulfobulbus propionicus DSM 2032] Length = 437 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 17/193 (8%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWAD--R 164 S R I ++G GVGKTT + K++ + G ++ L DT+R AA++Q+K++ + R Sbjct: 235 STRQRRISLIGPTGVGKTTTLAKIAAHYLGRFGGRIGLITIDTYRIAAVEQIKVYGEIMR 294 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + V I A + F+ VD+++IDTAGR N + + + +R Sbjct: 295 LPVEVV---IKPRELEEALDKFRD-----VDLVLIDTAGRSPRNGLDIQELAAFLR---- 342 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P +L A T + + Q ++ + I +K+D + G L+ I H Sbjct: 343 --PQWGIENNLLLSAATREREIEQTIKRFSILPISNFIFSKIDECDQLGVLLNIHYKHDT 400 Query: 285 PVYFLGVGEGIND 297 P+ FL G+ + + Sbjct: 401 PISFLTNGQRVPE 413 >gi|154686057|ref|YP_001421218.1| flagellar biosynthesis regulator FlhF [Bacillus amyloliquefaciens FZB42] gi|154351908|gb|ABS73987.1| FlhF [Bacillus amyloliquefaciens FZB42] Length = 363 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 17/197 (8%) Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 W + +++ G G GKTT + KL+ M K+ DT+R AA++QLK +A Sbjct: 165 RWQEGIQSKYVVLFGSTGAGKTTTLAKLAASSMLTEHKKIAFMTTDTYRIAAVEQLKTYA 224 Query: 163 DRTSADF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 + A VC + A E F + D + IDTAGR + + +MI Sbjct: 225 ELLQAPLEVC--YSKEECLKALEKFAE-----YDHVFIDTAGRNFKEEQYITELQEMIPF 277 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 L S L VL A+ ++Q ++ F V I TK D TA G + ++ Sbjct: 278 ESGL-----QSFL-VLSASAKYEDMKQGLKQFSGVP-VNQFIFTKTDETASLGSVFQVLS 330 Query: 281 THKIPVYFLGVGEGIND 297 +I +L G+ + + Sbjct: 331 ESRIGAAYLTNGQDVPE 347 >gi|88813216|ref|ZP_01128456.1| GTP-binding signal recognition particle SRP54 [Nitrococcus mobilis Nb-231] gi|88789538|gb|EAR20665.1| GTP-binding signal recognition particle SRP54 [Nitrococcus mobilis Nb-231] Length = 439 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 15/198 (7%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R VI +VG GVGKTT + KL+ + + V L D FR +QL+ +A Sbjct: 215 DIVERGGVIAIVGPTGVGKTTTVAKLAARFALRHGRRHVALVTTDNFRIGGQEQLRSFAR 274 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + + AA+ A + +++IDTAG H + L + ++ L+ Sbjct: 275 ILGIPVHTAHDREELAAVL------ADLRDKQLVLIDTAGMSHRDMRL----SEQLQALE 324 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 D +P V+ A T AL ++ +G I++K+D G + ++ ++ Sbjct: 325 TAD--SPIRAYLVVSANTQLPALCEIVRGFRKVNPSGCILSKVDEATSLGSALTALLRYR 382 Query: 284 IPVYFLGVGEGI-NDLEP 300 +PV +LG G+ + DL+P Sbjct: 383 LPVAYLGTGQRVPEDLQP 400 >gi|229172417|ref|ZP_04299976.1| hypothetical protein bcere0006_15280 [Bacillus cereus MM3] gi|228610888|gb|EEK68151.1| hypothetical protein bcere0006_15280 [Bacillus cereus MM3] Length = 436 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 20/242 (8%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + V+ + E+I +L + FN + F I + Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIGYILEDMRSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ + + + + + Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQDYVKKIGFEVIA--VRD 304 Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +AA AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414 Query: 294 GI 295 + Sbjct: 415 DV 416 >gi|163801860|ref|ZP_02195757.1| flagellar biosynthesis protein [Vibrio sp. AND4] gi|159174368|gb|EDP59172.1| flagellar biosynthesis protein [Vibrio sp. AND4] Length = 503 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 29/202 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 285 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEFGADNVALVTTDTYRIGAHEQLSIYGR 344 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ + A + Y Q + ++++DTAG RL LM G Sbjct: 345 IMGCPVRVAKDSDELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 398 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 ++I HS L VL AT + L++ ++ F + +G I+TK+D + G Sbjct: 399 EVI-----------HSYL-VLPATAQRRVLQETLDHFRRIP-LSGCILTKLDESLSLGEF 445 Query: 276 IPIVVTHKIPVYFLGVGEGIND 297 I +V+ + +PV ++ G+ + + Sbjct: 446 ISVVIQNAMPVAYIANGQRVPE 467 >gi|196045051|ref|ZP_03112284.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus 03BB108] gi|196024053|gb|EDX62727.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus 03BB108] Length = 436 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 20/242 (8%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + V+ + E+I +L + FN + F I + Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFETATMITEEEVIEYILEDMRSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ + + + + Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304 Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +AA AL Y FK + +VD ++IDTAG+ + S + +MI+ + +++P + Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIKTMGQVEP--DYIC 355 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414 Query: 294 GI 295 + Sbjct: 415 DV 416 >gi|218708838|ref|YP_002416459.1| flagellar biosynthesis regulator FlhF [Vibrio splendidus LGP32] gi|218321857|emb|CAV17836.1| Flagellar biosynthesis protein flhF [Vibrio splendidus LGP32] Length = 503 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 29/202 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R ++ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 285 DILKRGGIVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 344 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ S+ A + Y Q + ++++DTAG RL LM G Sbjct: 345 IMGCPVRVAKDSSELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 398 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 +I +S L VL AT + L++ +E F + +G I+TK+D + G Sbjct: 399 SVI-----------NSYL-VLPATAQRKVLQETIEHFRRIP-LSGCILTKLDESLSLGEF 445 Query: 276 IPIVVTHKIPVYFLGVGEGIND 297 I +V+ + +PV ++ G+ + + Sbjct: 446 ISVVIQNALPVAYIANGQRVPE 467 >gi|229011064|ref|ZP_04168258.1| hypothetical protein bmyco0001_15160 [Bacillus mycoides DSM 2048] gi|228750236|gb|EEM00068.1| hypothetical protein bmyco0001_15160 [Bacillus mycoides DSM 2048] Length = 436 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 108/240 (45%), Gaps = 20/240 (8%) Query: 64 QKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118 Q VE+ YA+ + V+ + E+I +L + FN + F I ++G Sbjct: 189 QNDVEQYFIHAYAEKLKVKFENATMITEEEVIGYILEDMRSHFNTENVFEKEVQTIALIG 248 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 GVGKTT + K++ + V D R + QL+ + ++ + + +A Sbjct: 249 PTGVGKTTTLAKMAWQFHAKRKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIA--VRDEA 306 Query: 179 A---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 A AL+Y FK + +VD ++IDTAG+ + S + +MI + +++P + L Sbjct: 307 AMTRALSY--FK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP--DYICLT 357 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 + + ++ + + F + G++ TK D TA G L+ I P+ + G+ + Sbjct: 358 LSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416 >gi|228958052|ref|ZP_04119787.1| hypothetical protein bthur0005_15630 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801569|gb|EEM48451.1| hypothetical protein bthur0005_15630 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 436 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/241 (23%), Positives = 106/241 (43%), Gaps = 18/241 (7%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + ++ + E+I +L + FN + F I + Sbjct: 187 LEQNDVEQYFIHAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL + + + SE+ + Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQL-----QDNVKTIGSEVIA 301 Query: 177 --DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 D AA+A + +VD ++IDTAG+ + S + +MI + +++P + L Sbjct: 302 VRDEAAMARALTYFKEEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP--DYICL 356 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 357 TLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQD 415 Query: 295 I 295 I Sbjct: 416 I 416 >gi|15622442|dbj|BAB66433.1| 103aa long hypothetical signal recognition particle protein [Sulfolobus tokodaii str. 7] Length = 103 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 56/102 (54%), Gaps = 6/102 (5%) Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 +H + L++ + +++++ K P + VLD+ G +AL Q + F G +I+T Sbjct: 1 MHIDEDLVSELKRIVKIAK------PDLRILVLDSLAGNDALEQAKYFENNVGYDAVILT 54 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 K+D A+GG ++ + PV +LGVG+ + L PF A+ F Sbjct: 55 KVDADAKGGVILSLAYELNKPVIYLGVGQDYDSLIPFDAEWF 96 >gi|163939581|ref|YP_001644465.1| flagellar biosynthesis regulator FlhF [Bacillus weihenstephanensis KBAB4] gi|163861778|gb|ABY42837.1| GTP-binding signal recognition particle SRP54 G- domain [Bacillus weihenstephanensis KBAB4] Length = 436 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 108/240 (45%), Gaps = 20/240 (8%) Query: 64 QKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118 Q VE+ YA+ + V+ + E+I +L + FN + F I ++G Sbjct: 189 QNDVEQYFIHAYAEKLKVKFENATMITEEEVIGYILEDMRSHFNTENVFEKEVQTIALIG 248 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 GVGKTT + K++ + V D R + QL+ + ++ + + +A Sbjct: 249 PTGVGKTTTLAKMAWQFHAKRKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIA--VRDEA 306 Query: 179 A---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 A AL+Y FK + +VD ++IDTAG+ + S + +MI + +++P + L Sbjct: 307 AMTRALSY--FK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP--DYICLT 357 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 + + ++ + + F + G++ TK D TA G L+ I P+ + G+ + Sbjct: 358 LSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416 >gi|226939712|ref|YP_002794785.1| flagellar biosynthesis regulator FlhF [Laribacter hongkongensis HLHK9] gi|226714638|gb|ACO73776.1| FlhF [Laribacter hongkongensis HLHK9] Length = 506 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 101/220 (45%), Gaps = 32/220 (14%) Query: 89 SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS-----KKMSDAGLKVM 143 S LIH + + P + D + V +VG GVGKTT I KL+ +K +DA V Sbjct: 262 SALIHNLRV---LPESDDIVDKGGVYALVGPTGVGKTTTIAKLAARATLRKGADA---VA 315 Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 L D++R A DQLK++ + +D A K K + ++ID+ G Sbjct: 316 LITTDSYRIGAQDQLKLYGRILQISVYAVDNEADLAL----TLKDLSHKHL--VLIDSVG 369 Query: 204 ------RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257 RL+ + + A G+ R ++R+ VL A + L+ V + G Sbjct: 370 IGQRDPRLNGQTQMYAASGQGERAIRRI---------LVLAANAAGHTLQDVIQRYQGEG 420 Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 G I++K+D + G + + + H++PV+++ G+ + + Sbjct: 421 LVGTIISKLDESPALGVALDVAIRHRLPVFYIANGQRVPE 460 >gi|114777583|ref|ZP_01452564.1| GTP-binding signal recognition particle SRP54, G-domain [Mariprofundus ferrooxydans PV-1] gi|114552054|gb|EAU54571.1| GTP-binding signal recognition particle SRP54, G-domain [Mariprofundus ferrooxydans PV-1] Length = 353 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 22/205 (10%) Query: 100 SKPFNWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 SK W P H +L G G GK+T+I KL+ S G+++ L + DT R + Sbjct: 141 SKTIRWSRRINPGQQQHTVLFSGPAGCGKSTLIAKLAAHYSMKGIRIALISTDTERMGGL 200 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM--- 212 D LK +A F SDAA + +Q Q+ + +L+ID+ G I + Sbjct: 201 DSLKAYASTLGVPFFPLNKLSDAANI----LRQTQSAQ--LLLIDSEGWSPRRDIGLRRQ 254 Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272 G+ ++ +R VL A + Q+ H + T L +K+D T + Sbjct: 255 TGLWDAMQCTER---------FLVLPANMDEEDGMQLLAHHTASAMTHLAFSKLDETQKP 305 Query: 273 GGLIPIVVTHKIPVYFLGVGEGIND 297 G ++ + +P+ + G + + Sbjct: 306 GKIVNWSIAAGMPLGYCSFGPEVPE 330 >gi|229144384|ref|ZP_04272789.1| hypothetical protein bcere0012_15440 [Bacillus cereus BDRD-ST24] gi|228639015|gb|EEK95440.1| hypothetical protein bcere0012_15440 [Bacillus cereus BDRD-ST24] Length = 436 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/241 (22%), Positives = 106/241 (43%), Gaps = 18/241 (7%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + ++ + E+I +L + FN + F I + Sbjct: 187 LEQNDVEQYFIHAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL + + + SE+ + Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDYSRIGTVQQL-----QDNVKTIGSEVIA 301 Query: 177 --DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 D AA+ + +VD ++IDTAG+ + S + +MI ++ +++P + L Sbjct: 302 VRDEAAMTRALMYFKEEARVDYILIDTAGKNYRTS---ETVEEMIEMMGQVEP--DYICL 356 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 357 TLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQD 415 Query: 295 I 295 I Sbjct: 416 I 416 >gi|86146121|ref|ZP_01064447.1| flagellar biosynthesis protein [Vibrio sp. MED222] gi|85836068|gb|EAQ54200.1| flagellar biosynthesis protein [Vibrio sp. MED222] Length = 493 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 29/202 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R ++ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 275 DILKRGGIVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 334 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ S+ A + Y Q + ++++DTAG RL LM G Sbjct: 335 IMGCPVRVAKDSSELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 388 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 +I +S L VL AT + L++ +E F + +G I+TK+D + G Sbjct: 389 SVI-----------NSYL-VLPATAQRKVLQETIEHFRRIP-LSGCILTKLDESLSLGEF 435 Query: 276 IPIVVTHKIPVYFLGVGEGIND 297 I +V+ + +PV ++ G+ + + Sbjct: 436 ISVVIQNALPVAYIANGQRVPE 457 >gi|302878262|ref|YP_003846826.1| flagellar biosynthetic protein FlhF [Gallionella capsiferriformans ES-2] gi|302581051|gb|ADL55062.1| flagellar biosynthetic protein FlhF [Gallionella capsiferriformans ES-2] Length = 451 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 20/196 (10%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V ++G GVGKTT KL+ + + KV L D++R A +QLKI+ Sbjct: 220 DIVVRGGVYALIGPTGVGKTTTTAKLAARAVVRYGADKVALLTTDSYRIGAYEQLKIYG- 278 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + V + G+D L A + +++IDT G + RV++ Sbjct: 279 KILGVAVHAVKGADDLRLTLAALRHKH-----LVLIDTVGMGQRDE----------RVVE 323 Query: 224 RLDPHAPHSV--LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 + D V L VL++T+G + L V + G I TK+D A G ++ +VV Sbjct: 324 QGDMFDAAGVQRLLVLNSTSGGDTLEDVVRMYYSNKVIGCIATKLDEAANLGAILDVVVR 383 Query: 282 HKIPVYFLGVGEGIND 297 H++ +YF+ G+ + + Sbjct: 384 HRLVMYFMANGQRVPE 399 >gi|229096256|ref|ZP_04227229.1| hypothetical protein bcere0020_15040 [Bacillus cereus Rock3-29] gi|229115211|ref|ZP_04244621.1| hypothetical protein bcere0017_15060 [Bacillus cereus Rock1-3] gi|228668351|gb|EEL23783.1| hypothetical protein bcere0017_15060 [Bacillus cereus Rock1-3] gi|228687216|gb|EEL41121.1| hypothetical protein bcere0020_15040 [Bacillus cereus Rock3-29] Length = 436 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 30/247 (12%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + V+ + E+I +L + FN + F I + Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIGYILEDMRSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ D+V + IGS Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ--------DYVKT-IGS 297 Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + A+ EA FK + +VD ++IDTAG+ + S + +MI + +++P Sbjct: 298 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---DTVEEMIETMGQVEP- 351 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 + L + + ++ + + F + G++ TK D TA G L+ I P+ Sbjct: 352 -DYICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 409 Query: 289 LGVGEGI 295 + G+ + Sbjct: 410 MTDGQDV 416 >gi|229043527|ref|ZP_04191236.1| hypothetical protein bcere0027_15750 [Bacillus cereus AH676] gi|228725749|gb|EEL76997.1| hypothetical protein bcere0027_15750 [Bacillus cereus AH676] Length = 436 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + ++ + E+I +L + FN + F I + Sbjct: 187 LEQNDVEQYFIHAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ D V + IGS Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 297 Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + A+ EA FK + +VD ++IDTAG+ + S + +MI + +++P Sbjct: 298 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP- 351 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 + L + + ++ + + F + G++ TK D TA G L+ I P+ Sbjct: 352 -DYICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 409 Query: 289 LGVGEGI 295 + G+ I Sbjct: 410 MTDGQDI 416 >gi|56460227|ref|YP_155508.1| flagellar biosynthesis regulator FlhF [Idiomarina loihiensis L2TR] gi|56179237|gb|AAV81959.1| Flagellar biosynthetic protein FlhF [Idiomarina loihiensis L2TR] Length = 444 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 17/196 (8%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R + +VG GVGKTT I KL+ + + KV L DTFR A +QL+ + Sbjct: 222 DILTRGGAVALVGPTGVGKTTTIAKLAARYAQRHGADKVALITTDTFRIGASEQLQTYG- 280 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 R V + A A A +Q +++IDTAG + L + ++I+ + Sbjct: 281 RIIGCPVKVAKNAQELADALLALRQK-----SLILIDTAGMGQRDKRLNEQLSQLIQNSR 335 Query: 224 -RLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 R+ P+ VL AT+ L V+ F A+ +G I TK+D G I + + Sbjct: 336 LRIRPYL------VLSATSQSQVLMDAVKQFKALP-LSGCIFTKLDECLSLGESISVAIE 388 Query: 282 HKIPVYFLGVGEGIND 297 H +PV +L G+ + + Sbjct: 389 HGLPVGYLTNGQQVPE 404 >gi|330950744|gb|EGH51004.1| signal recognition particle protein [Pseudomonas syringae Cit 7] Length = 243 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 45/83 (54%) Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 L V+DA TGQ+A + F TG+I+TK+DG ARGG + + P+ F+G+G Sbjct: 2 TLFVVDAMTGQDAANTAKAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMG 61 Query: 293 EGINDLEPFVAKDFSAVITGCLD 315 E LEPF ++ I G D Sbjct: 62 EKSEALEPFHPDRIASRILGMGD 84 >gi|84388126|ref|ZP_00991022.1| flagellar biosynthesis protein [Vibrio splendidus 12B01] gi|84377193|gb|EAP94063.1| flagellar biosynthesis protein [Vibrio splendidus 12B01] Length = 521 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 29/200 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R ++ ++G GVGKTT + KL+ + M V L DT+R A +QL I+ Sbjct: 303 DILKRGGIVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 362 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216 ++ S+ A + Y Q + ++++DTAG RL LM G Sbjct: 363 IMGCPVRVAKDSSELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 416 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275 +I +S L VL AT + L++ +E F + +G I+TK+D + G Sbjct: 417 SVI-----------NSYL-VLPATAQRKVLQETIEHFRRIP-LSGCILTKLDESLSLGEF 463 Query: 276 IPIVVTHKIPVYFLGVGEGI 295 I +V+ + +PV ++ G+ + Sbjct: 464 ISVVIQNALPVAYIANGQRV 483 >gi|229069322|ref|ZP_04202612.1| hypothetical protein bcere0025_15270 [Bacillus cereus F65185] gi|228713809|gb|EEL65694.1| hypothetical protein bcere0025_15270 [Bacillus cereus F65185] Length = 439 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + ++ + E+I +L + FN + F I + Sbjct: 190 LEQNDVEQYFIHAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 249 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ D V + IGS Sbjct: 250 IGPTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 300 Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + A+ EA FK + +VD ++IDTAG+ + S + +MI + +++P Sbjct: 301 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP- 354 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 + L + + ++ + + F + G++ TK D TA G L+ I P+ Sbjct: 355 -DYICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 412 Query: 289 LGVGEGI 295 + G+ I Sbjct: 413 MTDGQDI 419 >gi|225849141|ref|YP_002729305.1| flagellar biosynthetic protein FlhF [Sulfurihydrogenibium azorense Az-Fu1] gi|225644292|gb|ACN99342.1| flagellar biosynthetic protein FlhF [Sulfurihydrogenibium azorense Az-Fu1] Length = 385 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 90/188 (47%), Gaps = 14/188 (7%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 R V++ +G GVGKTT + K++ + + KV + + DTF++ A DQ + +++ Sbjct: 189 RQKVLVFLGPTGVGKTTNLFKIASNLVLNKNKKVAVLSIDTFKAGAADQARSYSNILGIP 248 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 F + SD + VDV+++DT GR H + +G+M L+ LD Sbjct: 249 FY---LLSDPKKIRETV---DDLNFVDVILVDTIGRSHYDH---WKLGEMKETLRFLDEA 299 Query: 229 APHSVLQV-LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 VL ++ N +++ + F + L TK+D T+ G ++ + V IP+ Sbjct: 300 QYMMVLSANMNTKESFNIIKKYQKFFKIDY---LFFTKIDETSYPGVILNLTVKTGIPLT 356 Query: 288 FLGVGEGI 295 ++ G+ + Sbjct: 357 YISTGQNV 364 >gi|75762828|ref|ZP_00742648.1| Flagellar biosynthesis protein flhF [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228900354|ref|ZP_04064583.1| hypothetical protein bthur0014_15600 [Bacillus thuringiensis IBL 4222] gi|74489682|gb|EAO53078.1| Flagellar biosynthesis protein flhF [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228859241|gb|EEN03672.1| hypothetical protein bthur0014_15600 [Bacillus thuringiensis IBL 4222] Length = 436 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 20/242 (8%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + ++ + E+I +L + FN + F I + Sbjct: 187 LEQNDVEQYFIYAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ ++ + + Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQDNVKTIGSEVIA--VRD 304 Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +AA AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEPD--YIC 355 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414 Query: 294 GI 295 I Sbjct: 415 DI 416 >gi|229149976|ref|ZP_04278202.1| hypothetical protein bcere0011_15320 [Bacillus cereus m1550] gi|228633498|gb|EEK90101.1| hypothetical protein bcere0011_15320 [Bacillus cereus m1550] Length = 436 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + ++ + E+I +L + FN + F I + Sbjct: 187 LEQNDVEQYFIHAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ D V + IGS Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 297 Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + A+ EA FK + +VD ++IDTAG+ + S + +MI + +++P Sbjct: 298 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP- 351 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 + L + + ++ + + F + G++ TK D TA G L+ I P+ Sbjct: 352 -DYICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 409 Query: 289 LGVGEGI 295 + G+ I Sbjct: 410 MTDGQDI 416 >gi|229132599|ref|ZP_04261447.1| hypothetical protein bcere0014_15310 [Bacillus cereus BDRD-ST196] gi|228650831|gb|EEL06818.1| hypothetical protein bcere0014_15310 [Bacillus cereus BDRD-ST196] Length = 436 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/245 (24%), Positives = 108/245 (44%), Gaps = 30/245 (12%) Query: 64 QKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118 Q VE+ YA+ + V+ + E+I +L + FN + F I ++G Sbjct: 189 QNDVEQYFIHAYAEKLKVKFENATMITEEEVIGYILKDMRSHFNTENVFEKEVQTIALIG 248 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 GVGKTT + K++ + V D R + QL+ D+V + IGS+ Sbjct: 249 PTGVGKTTTLAKMAWQFHAKRKTVGFITTDHSRIGTVQQLQ--------DYVKT-IGSEV 299 Query: 179 AALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 A+ EA FK + +VD ++IDTAG+ + S + +MI + +++P Sbjct: 300 IAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP--D 352 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 + L + + ++ + + F + G++ TK D TA G L+ I P+ + Sbjct: 353 YICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMT 411 Query: 291 VGEGI 295 G+ + Sbjct: 412 DGQDV 416 >gi|209695724|ref|YP_002263654.1| flagellar biosynthesis regulator FlhF [Aliivibrio salmonicida LFI1238] gi|208009677|emb|CAQ79976.1| flagellar biosynthesis protein FlhF [Aliivibrio salmonicida LFI1238] Length = 484 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 94/192 (48%), Gaps = 27/192 (14%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 ++ ++G GVGKTT I KL+ + M +V L DTFR A +QL I+ Sbjct: 270 IVALLGPTGVGKTTTIAKLAARAAMEYGPDQVALVTTDTFRIGAQEQLAIYGRIMGCPV- 328 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM-IRVLKRLDPHA 229 I DA LA + Q + ++++DT AG+G+ +R+ ++LD Sbjct: 329 --RIAKDADELATVLY---QLRNRRLILVDT-----------AGMGQRDVRLTEQLDTLM 372 Query: 230 PHSVLQ-----VLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 HS Q V+ AT + L++ ++ F + +G I++K+D + G LI + + + Sbjct: 373 EHSGSQINSYLVMPATAQRRVLQETIDHFKRIP-LSGCILSKIDESLSLGELISVTIENG 431 Query: 284 IPVYFLGVGEGI 295 +P+ ++ G+ + Sbjct: 432 LPISYIANGQRV 443 >gi|228938884|ref|ZP_04101484.1| hypothetical protein bthur0008_15450 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971765|ref|ZP_04132386.1| hypothetical protein bthur0003_15420 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978374|ref|ZP_04138751.1| hypothetical protein bthur0002_15780 [Bacillus thuringiensis Bt407] gi|228781391|gb|EEM29592.1| hypothetical protein bthur0002_15780 [Bacillus thuringiensis Bt407] gi|228787855|gb|EEM35813.1| hypothetical protein bthur0003_15420 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820733|gb|EEM66758.1| hypothetical protein bthur0008_15450 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939384|gb|AEA15280.1| signal recognition particle protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 436 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + ++ + E+I +L + FN + F I + Sbjct: 187 LEQNDVEQYFIYAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ D V + IGS Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 297 Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + A+ EA FK + +VD ++IDTAG+ + S + +MI + +++P Sbjct: 298 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP- 351 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 + L + + ++ + + F + G++ TK D TA G L+ I P+ Sbjct: 352 -DYICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 409 Query: 289 LGVGEGI 295 + G+ I Sbjct: 410 MTDGQDI 416 >gi|218896705|ref|YP_002445116.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus G9842] gi|218541539|gb|ACK93933.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus G9842] Length = 436 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + ++ + E+I +L + FN + F I + Sbjct: 187 LEQNDVEQYFIYAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ D V + IGS Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 297 Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + A+ EA FK + +VD ++IDTAG+ + S + +MI + +++P Sbjct: 298 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEPD 352 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 + L + + ++ + + F + G++ TK D TA G L+ I P+ Sbjct: 353 --YICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 409 Query: 289 LGVGEGI 295 + G+ I Sbjct: 410 MTDGQDI 416 >gi|49477324|ref|YP_035890.1| flagellar biosynthesis regulator FlhF [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228933055|ref|ZP_04095918.1| hypothetical protein bthur0009_15260 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229121323|ref|ZP_04250554.1| hypothetical protein bcere0016_16290 [Bacillus cereus 95/8201] gi|49328880|gb|AAT59526.1| flagellar biosynthetic protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228662168|gb|EEL17777.1| hypothetical protein bcere0016_16290 [Bacillus cereus 95/8201] gi|228826656|gb|EEM72427.1| hypothetical protein bthur0009_15260 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 436 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 20/242 (8%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + V+ + E+I +L + FN + F I + Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ + + + + Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304 Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +AA AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414 Query: 294 GI 295 + Sbjct: 415 DV 416 >gi|218234981|ref|YP_002366456.1| flagellar biosynthesis regulator FlhF [Bacillus cereus B4264] gi|218162938|gb|ACK62930.1| flagellar biosynthesis protein FlhF [Bacillus cereus B4264] Length = 436 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + ++ + E+I +L + FN + F I + Sbjct: 187 LEQNDVEQYFIYAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ D V + IGS Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 297 Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + A+ EA FK + +VD ++IDTAG+ + S + +MI + +++P Sbjct: 298 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP- 351 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 + L + + ++ + + F + G++ TK D TA G L+ I P+ Sbjct: 352 -DYICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 409 Query: 289 LGVGEGI 295 + G+ I Sbjct: 410 MTDGQDI 416 >gi|229155342|ref|ZP_04283452.1| hypothetical protein bcere0010_15350 [Bacillus cereus ATCC 4342] gi|228628057|gb|EEK84774.1| hypothetical protein bcere0010_15350 [Bacillus cereus ATCC 4342] Length = 433 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 20/242 (8%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + V+ + E+I +L + FN + F I + Sbjct: 184 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTENVFEKEVQTIAL 243 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ + + + + Sbjct: 244 IGPTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 301 Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +AA AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + Sbjct: 302 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 352 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 353 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 411 Query: 294 GI 295 + Sbjct: 412 DV 413 >gi|229195984|ref|ZP_04322736.1| hypothetical protein bcere0001_15450 [Bacillus cereus m1293] gi|228587366|gb|EEK45432.1| hypothetical protein bcere0001_15450 [Bacillus cereus m1293] Length = 436 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 20/242 (8%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + V+ + E+I +L + FN + F I + Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ + + + + Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304 Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +AA AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414 Query: 294 GI 295 + Sbjct: 415 DV 416 >gi|229102370|ref|ZP_04233078.1| hypothetical protein bcere0019_15300 [Bacillus cereus Rock3-28] gi|228681017|gb|EEL35186.1| hypothetical protein bcere0019_15300 [Bacillus cereus Rock3-28] Length = 436 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 20/242 (8%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + V+ + E+I +L + FN + F I + Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIGYILEDMRSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ + ++ + + Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQGYVKTIGSEVIA--VRD 304 Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +AA AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRTS---DTVEEMIETMGQVEP--DYIC 355 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414 Query: 294 GI 295 + Sbjct: 415 DV 416 >gi|239817111|ref|YP_002946021.1| flagellar biosynthesis regulator FlhF [Variovorax paradoxus S110] gi|239803688|gb|ACS20755.1| GTP-binding signal recognition particle SRP54 G- domain protein [Variovorax paradoxus S110] Length = 784 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 60/260 (23%), Positives = 115/260 (44%), Gaps = 26/260 (10%) Query: 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 R+ + L+R+ +G + ++ + +L Q + + SELI + P + Sbjct: 128 RDPMRGRLLRTLLGAGFSARLSKAMLEHLPTGQSYAQGMAFVRSELIRTL------PVHE 181 Query: 106 D---FSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKI 160 D + V ++G GVGKTT KL+ + M K+ L D++R A +QL+I Sbjct: 182 DEDALLAQGGVYALMGPTGVGKTTTTAKLAARCVMRFGADKLALVTTDSYRIGAYEQLRI 241 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 + + + +D + + Q K + ++IDT G + + I + Sbjct: 242 YGQILNVPVYAVKDATDL----HLVLQDLQGKHM--VLIDTVGMSQRDRAVSDQIAMLC- 294 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQV-EMFHAVAGT--TGLIMTKMDGTARGGGLIP 277 + P L +L+AT+ + L +V + +G+ G I TK+D G LI Sbjct: 295 -----NSQRPVKRLLLLNATSHGDTLNEVVHAYRHGSGSDLAGCIFTKVDEATHPGALID 349 Query: 278 IVVTHKIPVYFLGVGEGIND 297 V+ H++PV+++ G+ + + Sbjct: 350 TVIRHRLPVHYVSSGQKVPE 369 >gi|126653728|ref|ZP_01725646.1| flagellar biosynthesis regulator FlhF [Bacillus sp. B14905] gi|126589692|gb|EAZ83828.1| flagellar biosynthesis regulator FlhF [Bacillus sp. B14905] Length = 398 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 28/221 (12%) Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 S+ I V+G GVGKTT I K++ + + + K+ DT+R AAI+QLK +A Sbjct: 199 LSYERKYINVLGPTGVGKTTTIAKMAARAVLEKKKKIGFITTDTYRIAAIEQLKTYAGLL 258 Query: 166 SADFVCSEIGSDAAALAYEA--FKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 A +AY A F+QA + +D++ IDTAGR + + + ++I Sbjct: 259 QA----------PVEIAYNATDFEQAIQRLSHLDLVFIDTAGRNYKEVKYVDDLQRLI-- 306 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 + D A + VL TT + + ++ F+ + I TK+D T G ++ +++ Sbjct: 307 --KFDDQAESYL--VLAMTTKEKDMANIIDQFNQLP-IEKFIFTKIDETNSIGTMLNLMI 361 Query: 281 TH-KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEK 320 + K Y+ E D+E D AV+ GEEK Sbjct: 362 KYNKGLAYYTNGQEVPEDIE---EADLEAVLNLFFQ-GEEK 398 >gi|228914349|ref|ZP_04077964.1| hypothetical protein bthur0012_15810 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845343|gb|EEM90379.1| hypothetical protein bthur0012_15810 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 436 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 20/242 (8%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + V+ + E+I +L + FN + F I + Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ + + + + Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304 Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +AA AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414 Query: 294 GI 295 + Sbjct: 415 DV 416 >gi|228964755|ref|ZP_04125862.1| hypothetical protein bthur0004_15990 [Bacillus thuringiensis serovar sotto str. T04001] gi|228795005|gb|EEM42504.1| hypothetical protein bthur0004_15990 [Bacillus thuringiensis serovar sotto str. T04001] Length = 416 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + ++ + E+I +L + FN + F I + Sbjct: 167 LEQNDVEQYFIYAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 226 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ D V + IGS Sbjct: 227 IGPTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 277 Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + A+ EA FK + +VD ++IDTAG+ + S + +MI + +++P Sbjct: 278 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEPD 332 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 + L + + ++ + + F + G++ TK D TA G L+ I P+ Sbjct: 333 --YICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 389 Query: 289 LGVGEGI 295 + G+ I Sbjct: 390 MTDGQDI 396 >gi|218902885|ref|YP_002450719.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus AH820] gi|218535361|gb|ACK87759.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus AH820] Length = 436 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 20/242 (8%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + V+ + E+I +L + FN + F I + Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ + + + + Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304 Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +AA AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + Sbjct: 305 EAAITRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414 Query: 294 GI 295 + Sbjct: 415 DV 416 >gi|229058420|ref|ZP_04196804.1| hypothetical protein bcere0026_15320 [Bacillus cereus AH603] gi|228719929|gb|EEL71519.1| hypothetical protein bcere0026_15320 [Bacillus cereus AH603] Length = 436 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 105/239 (43%), Gaps = 14/239 (5%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + V+ + E+I +L + FN + F I + Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIGYILEDMRSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ + +T V + Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYV-KTIGSEVIAVRDE 305 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 A A A FK + +VD ++IDTAG+ + S + +MI + +++P + L + Sbjct: 306 PAMARALTYFK--EEARVDYILIDTAGKNYRTS---DTVEEMIETMGQVEP--DYICLTL 358 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 + ++ + + F + G++ TK D TA G L+ I P+ + G+ + Sbjct: 359 SASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416 >gi|229918647|ref|YP_002887293.1| GTP-binding signal recognition particle SRP54 G- domain protein [Exiguobacterium sp. AT1b] gi|229470076|gb|ACQ71848.1| GTP-binding signal recognition particle SRP54 G- domain protein [Exiguobacterium sp. AT1b] Length = 353 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 26/191 (13%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 ++VVG GVGKTT + KL+ G V L DT+R AAI+QLK +A+ S + Sbjct: 154 VMVVGPTGVGKTTTLAKLAAHFKLTEGKTVGLITTDTYRIAAIEQLKTYAEIMS---IPV 210 Query: 173 EIGSDAAALAYEAFKQAQ---AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 E+ D + FK+A+ A+K D+++IDTAGR + +++ H Sbjct: 211 EVAYD-----FHDFKRAKQLFARK-DIVLIDTAGRNFRDPAY----------VEQFHEHH 254 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGT---TGLIMTKMDGTARGGGLIPIVVTHKIPV 286 + + + + ++ ++M ++ + + LI TK D T+ + +V +PV Sbjct: 255 DFTETSLSLVLSLTSKMKDMDMIYSQFESLPLSSLIFTKADETSDIHAMYRMVKKSGLPV 314 Query: 287 YFLGVGEGIND 297 ++ G+ + D Sbjct: 315 AWMTDGQEVPD 325 >gi|228952154|ref|ZP_04114246.1| hypothetical protein bthur0006_15630 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229078953|ref|ZP_04211505.1| hypothetical protein bcere0023_16150 [Bacillus cereus Rock4-2] gi|228704367|gb|EEL56801.1| hypothetical protein bcere0023_16150 [Bacillus cereus Rock4-2] gi|228807508|gb|EEM54035.1| hypothetical protein bthur0006_15630 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 439 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + ++ + E+I +L + FN + F I + Sbjct: 190 LEQNDVEQYFIHAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 249 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ D V + IGS Sbjct: 250 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 300 Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + A+ EA FK + +VD ++IDTAG+ + S + +MI + +++P Sbjct: 301 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP- 354 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 + L + + ++ + + F + G++ TK D TA G L+ I P+ Sbjct: 355 -DYICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 412 Query: 289 LGVGEGI 295 + G+ I Sbjct: 413 MTDGQDI 419 >gi|229189869|ref|ZP_04316879.1| hypothetical protein bcere0002_15430 [Bacillus cereus ATCC 10876] gi|228593543|gb|EEK51352.1| hypothetical protein bcere0002_15430 [Bacillus cereus ATCC 10876] Length = 439 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + ++ + E+I +L + FN + F I + Sbjct: 190 LEQNDVEQYFIHAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 249 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ D V + IGS Sbjct: 250 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 300 Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + A+ EA FK + +VD ++IDTAG+ + S + +MI + +++P Sbjct: 301 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP- 354 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 + L + + ++ + + F + G++ TK D TA G L+ I P+ Sbjct: 355 -DYICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 412 Query: 289 LGVGEGI 295 + G+ I Sbjct: 413 MTDGQDI 419 >gi|228926807|ref|ZP_04089875.1| hypothetical protein bthur0010_15230 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832920|gb|EEM78489.1| hypothetical protein bthur0010_15230 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 436 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 20/242 (8%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + V+ + E+I +L + FN + F I + Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ + + + + Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304 Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +AA AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSAAPIVLMTDGQ 414 Query: 294 GI 295 + Sbjct: 415 DV 416 >gi|169827141|ref|YP_001697299.1| flagellar biosynthesis regulator FlhF [Lysinibacillus sphaericus C3-41] gi|168991629|gb|ACA39169.1| Flagellar biosynthesis protein flhF (Flagella-associated GTP-binding protein) [Lysinibacillus sphaericus C3-41] Length = 398 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 28/221 (12%) Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 S+ I V+G GVGKTT I K++ + + + K+ DT+R AAI+QLK +A Sbjct: 199 LSYERKYINVLGPTGVGKTTTIAKMAARAVLEKKKKIGFITTDTYRIAAIEQLKTYAGLL 258 Query: 166 SADFVCSEIGSDAAALAYEA--FKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 A +AY A F+QA + +D++ IDTAGR + + + ++I Sbjct: 259 QA----------PVEIAYNATDFEQAIQRLSHLDLVFIDTAGRNYKEIKYVDDLQRLI-- 306 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 + D A S L VL TT + + ++ F+ + I TK+D T G ++ +++ Sbjct: 307 --KFDDQA-ESFL-VLAMTTKEKDMANIIDQFNQLP-IEKFIFTKIDETNSIGTMLNLMI 361 Query: 281 TH-KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEK 320 + K Y+ E D+E D AV+ GEEK Sbjct: 362 KYNKGLAYYTNGQEVPEDIE---EADLEAVLNLFFQ-GEEK 398 >gi|206974777|ref|ZP_03235692.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus H3081.97] gi|222095394|ref|YP_002529454.1| flagellar biosynthesis regulator flhf [Bacillus cereus Q1] gi|206746796|gb|EDZ58188.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus H3081.97] gi|221239452|gb|ACM12162.1| flagellar biosynthetic protein [Bacillus cereus Q1] Length = 436 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 106/240 (44%), Gaps = 20/240 (8%) Query: 64 QKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118 Q VE+ YA+ + V+ + E+I +L + FN + F I ++G Sbjct: 189 QNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTENVFEKEVQTIALIG 248 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 GVGKTT + K++ + V D R + QL+ + + + + +A Sbjct: 249 PTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRDEA 306 Query: 179 A---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 A AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + L Sbjct: 307 AMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYICLT 357 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 + + ++ + + F + G++ TK D TA G L+ I P+ + G+ + Sbjct: 358 LSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416 >gi|228920481|ref|ZP_04083826.1| hypothetical protein bthur0011_14950 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839111|gb|EEM84407.1| hypothetical protein bthur0011_14950 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 436 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + ++ + E+I +L + FN + F I + Sbjct: 187 LEQNDVEQYFIHAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ D V + IGS Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 297 Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + A+ EA FK + +VD ++IDTAG+ + S + +MI + +++P Sbjct: 298 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP- 351 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 + L + + ++ + + F + G++ TK D TA G L+ I P+ Sbjct: 352 -DYICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 409 Query: 289 LGVGEGI 295 + G+ I Sbjct: 410 MTDGQDI 416 >gi|229109227|ref|ZP_04238826.1| hypothetical protein bcere0018_14980 [Bacillus cereus Rock1-15] gi|229127098|ref|ZP_04256095.1| hypothetical protein bcere0015_15520 [Bacillus cereus BDRD-Cer4] gi|296502372|ref|YP_003664072.1| cell division protein FtsY [Bacillus thuringiensis BMB171] gi|110002656|emb|CAJ55244.1| flagellum-associated protein [Bacillus cereus ATCC 14579] gi|228656214|gb|EEL12055.1| hypothetical protein bcere0015_15520 [Bacillus cereus BDRD-Cer4] gi|228674237|gb|EEL29482.1| hypothetical protein bcere0018_14980 [Bacillus cereus Rock1-15] gi|296323424|gb|ADH06352.1| cell division protein ftsY [Bacillus thuringiensis BMB171] Length = 439 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + ++ + E+I +L + FN + F I + Sbjct: 190 LEQNDVEQYFIHAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 249 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ D V + IGS Sbjct: 250 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 300 Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + A+ EA FK + +VD ++IDTAG+ + S + +MI + +++P Sbjct: 301 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP- 354 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 + L + + ++ + + F + G++ TK D TA G L+ I P+ Sbjct: 355 -DYICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 412 Query: 289 LGVGEGI 295 + G+ I Sbjct: 413 MTDGQDI 419 >gi|149194329|ref|ZP_01871426.1| flagellar biosynthesis regulator FlhF [Caminibacter mediatlanticus TB-2] gi|149135504|gb|EDM23983.1| flagellar biosynthesis regulator FlhF [Caminibacter mediatlanticus TB-2] Length = 410 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/212 (24%), Positives = 93/212 (43%), Gaps = 21/212 (9%) Query: 111 PH--VILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 PH +++ VG GVGKTT I KL+ + + KV + DT+R A++QL +A Sbjct: 209 PHKKILMFVGPTGVGKTTTIAKLAARYAYKLSTRHKVGIITLDTYRIGAVEQLMTYAKMM 268 Query: 166 SADFVCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 +D F++A + D ++IDT G ++ + + ++V Sbjct: 269 KLPIETVVDPND--------FEEALNSLRHNDYILIDTVGSSQHDKEKIEKLNSFLKV-- 318 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 D A +V VL A T L + ++ + TK+D T G + +++ K Sbjct: 319 --DSFAEINVNLVLSAVTKYEDLIDIYKNFSILPIDTFVFTKLDETKSYGNVFSLLLDTK 376 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 P+ + +G+ + D + + +I G L+ Sbjct: 377 KPISYFSIGQEVPD--DLIVANADYLINGILN 406 >gi|196038895|ref|ZP_03106202.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus NVH0597-99] gi|196030040|gb|EDX68640.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus NVH0597-99] Length = 436 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 20/242 (8%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + V+ + E+I +L + FN + F I + Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIKYILEDMRSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ + + + + Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304 Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +AA AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414 Query: 294 GI 295 + Sbjct: 415 DV 416 >gi|285018165|ref|YP_003375876.1| flagellar GTP-binding protein flhf [Xanthomonas albilineans GPE PC73] gi|283473383|emb|CBA15888.1| probable flagellar gtp-binding protein flhf [Xanthomonas albilineans] Length = 527 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 87/191 (45%), Gaps = 23/191 (12%) Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI ++G G GKTT I KL+ +A V L DT R +QL + + Sbjct: 320 VIALIGPTGAGKTTTIAKLASLFLERNAARDVALVTTDTVRVGGREQLHSYGRQLG--IA 377 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVD--VLIIDTAGRLHNNSILMAGIG--KMIRVLKRLD 226 E SDA+ +Q + D +++IDTAG + L A + + RV++ Sbjct: 378 VHEADSDAS------LQQLLQRLADYKLVLIDTAGMGQRDRALAAQLHWLRASRVVR--- 428 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 L VL + L +V A A G+I+TK+D T R G + +VV H++P+ Sbjct: 429 ------SLLVLPTNAHFSDLDEVVRRFASADPQGVILTKLDETGRFGSALSVVVDHRLPI 482 Query: 287 YFLGVGEGIND 297 ++ G+ + D Sbjct: 483 TWVTDGQRVPD 493 >gi|229178179|ref|ZP_04305550.1| hypothetical protein bcere0005_15410 [Bacillus cereus 172560W] gi|228605309|gb|EEK62759.1| hypothetical protein bcere0005_15410 [Bacillus cereus 172560W] Length = 436 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + ++ + E+I +L + FN + F I + Sbjct: 187 LEQNDVEQYFIHAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ D V + IGS Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 297 Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + A+ EA FK + +VD ++IDTAG+ + S + +MI + +++P Sbjct: 298 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP- 351 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 + L + + ++ + + F + G++ TK D TA G L+ I P+ Sbjct: 352 -DYICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 409 Query: 289 LGVGEGI 295 + G+ I Sbjct: 410 MTDGQDI 416 >gi|206970576|ref|ZP_03231528.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus AH1134] gi|206734212|gb|EDZ51382.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus AH1134] Length = 439 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + ++ + E+I +L + FN + F I + Sbjct: 190 LEQNDVEQYFIHAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 249 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ D V + IGS Sbjct: 250 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 300 Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + A+ EA FK + +VD ++IDTAG+ + S + +MI + +++P Sbjct: 301 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP- 354 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 + L + + ++ + + F + G++ TK D TA G L+ I P+ Sbjct: 355 -DYICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 412 Query: 289 LGVGEGI 295 + G+ I Sbjct: 413 MTDGQDI 419 >gi|73539439|ref|YP_299806.1| flagellar biosynthesis protein [Ralstonia eutropha JMP134] gi|72122776|gb|AAZ64962.1| GTP-binding signal recognition particle SRP54, G-domain [Ralstonia eutropha JMP134] Length = 804 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 24/195 (12%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V+ ++G GVGKTT KL+ + + ++ L D+FR A +QL+I+ D V Sbjct: 177 VLALIGPTGVGKTTTTAKLAARYVLRHGPERLALLTTDSFRIGAHEQLRIYGDILG---V 233 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 DAA L F A K ++IIDT G + L I + V AP Sbjct: 234 PVHAVKDAADLR---FALAAMKDKHLVIIDTVGMSQRDRNLSEQIAMLAGV------QAP 284 Query: 231 HSVLQVLDATTGQNALRQVEMFHAV--------AGTTGLIMTKMDGTARGGGLIPIVVTH 282 + +L+ + + L E+ HA G G I++K+D G ++ +V+ H Sbjct: 285 VQRVLLLNGASHGDTLN--EVVHAYRHDAVPEGGGVDGCIISKLDEATHLGSVLDVVIRH 342 Query: 283 KIPVYFLGVGEGIND 297 ++PV+++ G+ + + Sbjct: 343 RLPVFYVSTGQRVPE 357 >gi|228907404|ref|ZP_04071262.1| hypothetical protein bthur0013_15710 [Bacillus thuringiensis IBL 200] gi|228852265|gb|EEM97061.1| hypothetical protein bthur0013_15710 [Bacillus thuringiensis IBL 200] Length = 436 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 20/242 (8%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + ++ + E+I +L + FN + F I + Sbjct: 187 LEQNDVEQYFIYAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ ++ + + Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDNVKTIGSEVIA--VRD 304 Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +AA AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEPD--YIC 355 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414 Query: 294 GI 295 I Sbjct: 415 DI 416 >gi|229017057|ref|ZP_04173976.1| hypothetical protein bcere0030_16210 [Bacillus cereus AH1273] gi|229023238|ref|ZP_04179748.1| hypothetical protein bcere0029_15790 [Bacillus cereus AH1272] gi|228738032|gb|EEL88518.1| hypothetical protein bcere0029_15790 [Bacillus cereus AH1272] gi|228744230|gb|EEL94313.1| hypothetical protein bcere0030_16210 [Bacillus cereus AH1273] Length = 436 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 27/217 (12%) Query: 89 SELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 E+I +L + FN + F I ++G GVGKTT + K++ + V Sbjct: 217 EEVIGYILEDMKSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHAKRKTVGFIT 276 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA--------FKQAQAKKVDVLI 198 D R + QL+ D+V + IGS+ A+ EA FK+ +VD ++ Sbjct: 277 TDHSRIGTVQQLQ--------DYVKT-IGSEVIAVRDEAAMTRALTYFKEES--RVDYIL 325 Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 IDTAG+ + S I +MI + +++P + L + + ++ + + F + Sbjct: 326 IDTAGKNYRTS---ETIEEMIETMGQVEP--DYICLTLSASMKSKDMIEIITNFKDI-HI 379 Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 G++ TK D TA G L+ I P+ + G+ + Sbjct: 380 DGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416 >gi|118477203|ref|YP_894354.1| flagellar biosynthesis regulator FlhF [Bacillus thuringiensis str. Al Hakam] gi|225863629|ref|YP_002749007.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus 03BB102] gi|229183963|ref|ZP_04311178.1| hypothetical protein bcere0004_15300 [Bacillus cereus BGSC 6E1] gi|118416428|gb|ABK84847.1| flagellar biosynthetic protein [Bacillus thuringiensis str. Al Hakam] gi|225788841|gb|ACO29058.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus 03BB102] gi|228599488|gb|EEK57093.1| hypothetical protein bcere0004_15300 [Bacillus cereus BGSC 6E1] Length = 436 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 20/242 (8%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + V+ + E+I +L + FN + F I + Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIKYILEDMRSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ + + + + Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304 Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +AA AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414 Query: 294 GI 295 + Sbjct: 415 DV 416 >gi|116694209|ref|YP_728420.1| flagellar biosynthesis regulator FlhF [Ralstonia eutropha H16] gi|113528708|emb|CAJ95055.1| Flagellar GTP-binding protein [Ralstonia eutropha H16] Length = 776 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 24/195 (12%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V+ +VG GVGKTT KL+ + + K+ L D+FR A +QL+I+ D V Sbjct: 173 VLALVGPTGVGKTTTTAKLAARFVLRHGADKLALLTTDSFRIGAHEQLRIYGDILG---V 229 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 DAA L F A K ++IIDT G + L I + V AP Sbjct: 230 PVHAVKDAADLR---FALAAMKDKHLVIIDTVGMSQRDRSLSEQIAMLAGV------PAP 280 Query: 231 HSVLQVLDATTGQNALRQVEMFHAV--------AGTTGLIMTKMDGTARGGGLIPIVVTH 282 + +L+ + + L E+ HA G G I++K+D G ++ +V+ H Sbjct: 281 VQRVLLLNGASHGDTLN--EVVHAYRHDAAPDGGGIDGCIISKLDEATHLGSVLDVVIRH 338 Query: 283 KIPVYFLGVGEGIND 297 ++PV++ G+ + + Sbjct: 339 RLPVFYASTGQRVPE 353 >gi|148926870|ref|ZP_01810548.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145844447|gb|EDK21555.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 484 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 14/190 (7%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 ++++VG GVGKTT + KL+ + + D K + DT+R A++QL +A + Sbjct: 284 IMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPII 343 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 S D EA K +V+++DT G N+ + + K L + +A Sbjct: 344 DSIEPKDLD----EAIKSLN--NCEVILVDTIG---NSQYDQSKLAKTKEFL--MHSNAE 392 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 V V+ A T L ++ + LI+TK D T G + +V IP+ F Sbjct: 393 IDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLSFFS 452 Query: 291 VGEGI-NDLE 299 +G+ + +DLE Sbjct: 453 IGQEVPDDLE 462 >gi|192359435|ref|YP_001982608.1| flagellar biosynthesis protein FlhF [Cellvibrio japonicus Ueda107] gi|190685600|gb|ACE83278.1| flagellar biosynthesis protein FlhF [Cellvibrio japonicus Ueda107] Length = 527 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 37/192 (19%) Query: 117 VGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWA-----------D 163 VG GVGKTT IGKL+ + + KV L DT+R AA DQL+ A + Sbjct: 331 VGPTGVGKTTTIGKLAARYVLQHGADKVALITTDTYRIAAHDQLRSLARILRVPVKVVDE 390 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 S D V + + +++IDTAG H + L A + + LK Sbjct: 391 ANSLDMVLRSL-----------------RHCSLVLIDTAGFRHGDPHLKAQLHALAE-LK 432 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 +++ + V+ + L+ + A G I+TK+D TA G + +V+ + Sbjct: 433 QVNTYL------VMSCNSQAQMLKASIHAYGAARLQGCILTKLDETASMGEALGVVMQSR 486 Query: 284 IPVYFLGVGEGI 295 +PV + G+ I Sbjct: 487 LPVAYTTDGQDI 498 >gi|70729055|ref|YP_258791.1| flagellar biosynthesis regulator FlhF [Pseudomonas fluorescens Pf-5] gi|68343354|gb|AAY90960.1| flagellar biosynthesis protein FlhF [Pseudomonas fluorescens Pf-5] Length = 440 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D++R A +QLK + Sbjct: 222 VIAMVGPAGMGKTTTLAKLAARYVLKYGAQNIALVSMDSYRIGAQEQLKTLGRILNVSVT 281 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G A +A K+V ++IDTAG ++ L + G+ IR L Sbjct: 282 HVDPGQSLA----QALDPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIRAKNYL- 334 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + ++H++PV Sbjct: 335 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 385 Query: 287 YFLGVGEGIND 297 +L G I D Sbjct: 386 AYLTDGPRIPD 396 >gi|86149714|ref|ZP_01067944.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597714|ref|ZP_01100947.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp. jejuni 84-25] gi|218561749|ref|YP_002343528.1| flagellar biosynthesis regulator FlhF [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|9297094|sp|O52908|FLHF_CAMJE RecName: Full=Flagellar biosynthesis protein flhF; AltName: Full=Flagella-associated GTP-binding protein gi|85839982|gb|EAQ57241.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190018|gb|EAQ93994.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp. jejuni 84-25] gi|112359455|emb|CAL34238.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925360|gb|ADC27712.1| flagellar biosynthesis regulator FlhF [Campylobacter jejuni subsp. jejuni IA3902] gi|315927747|gb|EFV07074.1| SRP54-type protein, GTPase domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929661|gb|EFV08839.1| SRP54-type protein, GTPase domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 484 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 14/193 (7%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 + ++++VG GVGKTT + KL+ + + D K + DT+R A++QL +A Sbjct: 281 KQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKL 340 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + S D EA K +V+++DT G N+ + + K L + Sbjct: 341 PIIDSIEPKDLD----EAIKSLN--NCEVILVDTIG---NSQYDQSKLAKTKEFL--MHS 389 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 +A V V+ A T L ++ + LI+TK D T G + +V IP+ Sbjct: 390 NAEIDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLS 449 Query: 288 FLGVGEGI-NDLE 299 F +G+ + +DLE Sbjct: 450 FFSIGQEVPDDLE 462 >gi|52143686|ref|YP_083141.1| flagellar biosynthesis regulator FlhF [Bacillus cereus E33L] gi|51977155|gb|AAU18705.1| flagellar biosynthetic protein [Bacillus cereus E33L] Length = 436 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 106/240 (44%), Gaps = 20/240 (8%) Query: 64 QKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118 Q VE+ YA+ + V+ + E+I +L + FN + F I ++G Sbjct: 189 QNDVEQYFIHAYAEKLKVKFENATMITEEEVIKYILEDMRSHFNTENVFEKEVQTIALIG 248 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 GVGKTT + K++ + V D R + QL+ + + + + +A Sbjct: 249 PTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRDEA 306 Query: 179 A---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 A AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + L Sbjct: 307 AMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYICLT 357 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 + + ++ + + F + G++ TK D TA G L+ I P+ + G+ + Sbjct: 358 LSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416 >gi|296121395|ref|YP_003629173.1| GTP-binding signal recognition particle SRP54 G- domain protein [Planctomyces limnophilus DSM 3776] gi|296013735|gb|ADG66974.1| GTP-binding signal recognition particle SRP54 G- domain protein [Planctomyces limnophilus DSM 3776] Length = 626 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 24/242 (9%) Query: 62 VAQKIVEELL---TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118 +A+K++++L T + D R+L + LI + L LS+P PHV+ +VG Sbjct: 363 IARKLLKKLACLATPKELTDPQASRLL--LLSLIEQELN-LSRPVQI-APGTPHVVALVG 418 Query: 119 VNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWAD--RTSADFVCSEIG 175 GVGKTT + KL+ + KV L DTFR AA++QLK +A+ V S Sbjct: 419 PTGVGKTTTLAKLAAQARLREHRKVGLITVDTFRIAAVEQLKTYAEIMELPMRVVSSPAE 478 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 +A Y D+++IDT+GR + + + ++ + HA H + Sbjct: 479 MRSAMDDYATM--------DLVLIDTSGRSPYDELKNQELKAIL-----AEAHA-HEIHL 524 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 + + + + G LI+TK+D G ++ + +P+ +L G+ + Sbjct: 525 CISMASDPRSTTMIASKFITIGANQLILTKLDEIQDYGAVLATNLNSTLPLSYLTTGQEV 584 Query: 296 ND 297 D Sbjct: 585 PD 586 >gi|157738157|ref|YP_001490841.1| flagellar biosynthesis (GTP-binding) protein FlhF [Arcobacter butzleri RM4018] gi|315636300|ref|ZP_07891550.1| flagellar biosynthesis (GTP-binding) protein FlhF [Arcobacter butzleri JV22] gi|157700011|gb|ABV68171.1| flagellar biosynthesis (GTP-binding) protein FlhF [Arcobacter butzleri RM4018] gi|315479389|gb|EFU70072.1| flagellar biosynthesis (GTP-binding) protein FlhF [Arcobacter butzleri JV22] Length = 383 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 16/202 (7%) Query: 102 PFNWDFSHRPH---VILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAAGDTFRSAAI 155 P + RP +I++VG GVGKTT I KL+ + + KV + D+FR A+ Sbjct: 170 PIKHEVPLRPQQRKIIMMVGPTGVGKTTTISKLAARYAYKLGQNYKVGIVTLDSFRVGAV 229 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 +QL+ + + + D A EA + K + + IDTAG + + I Sbjct: 230 EQLQAYTNIMRLPLEVVKKPDDLA----EAL--LRLKDCNYIFIDTAGSSQYDIDKIELI 283 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 + ++ L P + VL A + L ++ +++ L TK+D T G L Sbjct: 284 NDYQKKVEEL----PIEKILVLPANVKHSDLLEIYKNYSILDIDYLTFTKLDETRSFGNL 339 Query: 276 IPIVVTHKIPVYFLGVGEGIND 297 I K + + +G+ + D Sbjct: 340 ISFAHKTKKSITYFSIGQNVPD 361 >gi|296274011|ref|YP_003656642.1| flagellar biosynthetic protein FlhF [Arcobacter nitrofigilis DSM 7299] gi|296098185|gb|ADG94135.1| flagellar biosynthetic protein FlhF [Arcobacter nitrofigilis DSM 7299] Length = 386 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 94/216 (43%), Gaps = 18/216 (8%) Query: 87 DVSELIHKMLMPLSK--PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS---DAGLK 141 D +LI + ++P+ P H+ ++++VG GVGKTT I KL+ + + K Sbjct: 163 DFFKLILRRIIPIKNEVPLR---KHQRKIMMMVGPTGVGKTTTIAKLAARYAYKLGENYK 219 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 V + D+FR AI+QL+ + + EI L + K + + IDT Sbjct: 220 VGVVTLDSFRVGAIEQLQAYTNIMRLPL---EIVKKPEDLVESLLR---LKDCNYIFIDT 273 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 AG + + I + K++D VL VL A Q+ L + ++ L Sbjct: 274 AGSSQYD---IDKIELINEFQKKVDELPIEKVL-VLPANVKQSDLMDIYTNYSRLNIDYL 329 Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 TK+D T G LI K + ++ +G+ + D Sbjct: 330 TFTKLDETKSFGNLISFAHKTKKSITYMSIGQNVPD 365 >gi|209522289|ref|ZP_03270917.1| GTP-binding signal recognition particle SRP54 G- domain [Burkholderia sp. H160] gi|209497283|gb|EDZ97510.1| GTP-binding signal recognition particle SRP54 G- domain [Burkholderia sp. H160] Length = 338 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 95/211 (45%), Gaps = 18/211 (8%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 R V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 105 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG- 163 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V D+A L ++ + +++IDT G + ++ I + R + Sbjct: 164 --VSVHAVKDSADLQ---LALSELRNKHIVLIDTIGMSQRDRLVSDQIAMLCRAGQ---- 214 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHK 283 P L +L+AT+ + L +V + A G I+TK+D GG++ V+ +K Sbjct: 215 --PVQRLLLLNATSHGDTLNEVVQAYQRAPDQQPLAGCILTKIDEATNLGGVLDTVIRYK 272 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 +PV+++ G+ + + K F T C+ Sbjct: 273 LPVHYVSTGQKVPENLYVATKKFLIKSTFCI 303 >gi|3913656|sp|O52256|FLHF_PSEPU RecName: Full=Flagellar biosynthesis protein flhF; AltName: Full=Flagella-associated GTP-binding protein gi|7677123|gb|AAF67042.1|AF183382_2 flagellar protein FlhF [Pseudomonas putida] gi|2853595|gb|AAC08059.1| FlhF [Pseudomonas putida] Length = 437 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D+FR A +QLK + Sbjct: 220 VIAMVGPAGMGKTTTLAKLAARYVLKYGAQNLALVSMDSFRIGAQEQLKTLGRILNVPVT 279 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G AA A E + + V++IDTAG ++ L + G+ I L Sbjct: 280 YVDPGQSLAA-ALEPLLRKR-----VVLIDTAGLQASDPALRMQLETLAGRGIAAKNYL- 332 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + ++H++PV Sbjct: 333 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISHELPV 383 Query: 287 YFLGVGEGIND 297 +L G I D Sbjct: 384 AYLTDGPRIPD 394 >gi|86154015|ref|ZP_01072216.1| flagellar biosynthesis protein flhF [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613495|ref|YP_999790.1| flagellar biosynthesis regulator FlhF [Campylobacter jejuni subsp. jejuni 81-176] gi|167004765|ref|ZP_02270523.1| flagellar biosynthesis regulator FlhF [Campylobacter jejuni subsp. jejuni 81-176] gi|85842429|gb|EAQ59643.1| flagellar biosynthesis protein flhF [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249038|gb|EAQ72000.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp. jejuni 81-176] Length = 484 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 14/190 (7%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 ++++VG GVGKTT + KL+ + + D K + DT+R A++QL +A + Sbjct: 284 IMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPII 343 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 S D EA K +V+++DT G N+ + + K L + +A Sbjct: 344 DSIEPKDLD----EAIKSLN--NCEVILVDTIG---NSQYDQSKLAKTKEFL--MHSNAE 392 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 V V+ A T L ++ + LI+TK D T G + +V IP+ F Sbjct: 393 IDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLSFFS 452 Query: 291 VGEGI-NDLE 299 +G+ + +DLE Sbjct: 453 IGQEVPDDLE 462 >gi|188592107|ref|YP_001796705.1| flagellar biosynthesis regulator flhf [Cupriavidus taiwanensis LMG 19424] gi|170938481|emb|CAP63468.1| Putative flagellar biosynthesis protein, flagella-associated GTP-binding protein; GTP-binding SRP family [Cupriavidus taiwanensis LMG 19424] Length = 779 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 24/195 (12%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V+ +VG GVGKTT KL+ + + K+ L D+FR A +QL+I+ D V Sbjct: 177 VLALVGPTGVGKTTTTAKLAARYVLRHGADKLALLTTDSFRIGAHEQLRIYGDILG---V 233 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 DAA L F A K ++IIDT G + L I + V AP Sbjct: 234 PVHAVKDAADLR---FALAAMKDKHLVIIDTVGMSQRDRSLSEQIAMLAGV------PAP 284 Query: 231 HSVLQVLDATTGQNALRQVEMFHAV--------AGTTGLIMTKMDGTARGGGLIPIVVTH 282 + +L+ + + L E+ HA G G I++K+D G ++ +V+ H Sbjct: 285 VQRVLLLNGASHGDTLN--EVVHAYRHDAAPDGGGIDGCIISKLDEATHLGSVLDVVIRH 342 Query: 283 KIPVYFLGVGEGIND 297 ++PV++ G+ + + Sbjct: 343 RLPVFYASTGQRVPE 357 >gi|196033363|ref|ZP_03100775.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus W] gi|195993797|gb|EDX57753.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus W] Length = 433 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 20/242 (8%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + V+ + E+I +L + FN + F I + Sbjct: 184 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIKYILEDMRSHFNTENVFEKEVQTIAL 243 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ + + + + Sbjct: 244 IGPTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 301 Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +AA AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + Sbjct: 302 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 352 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 353 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 411 Query: 294 GI 295 + Sbjct: 412 DV 413 >gi|254246772|ref|ZP_04940093.1| Flagellar GTP-binding protein [Burkholderia cenocepacia PC184] gi|124871548|gb|EAY63264.1| Flagellar GTP-binding protein [Burkholderia cenocepacia PC184] Length = 421 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 18/191 (9%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ V Sbjct: 191 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 247 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 DA LA ++ + +++IDT G + + I +L +AP Sbjct: 248 PVHAVKDAGDLA---LALSELRNKHIVLIDTIGMSQRDR----AVSDQIAMLH--GANAP 298 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHKIPV 286 L +L+AT+ + L +V + AG G I+TK+D GG++ V+ +K+PV Sbjct: 299 VQRLLLLNATSHGDTLNEVVQAYRSAGEHPDLAGCILTKLDEATHLGGVLDTVIRYKLPV 358 Query: 287 YFLGVGEGIND 297 +++ G+ + + Sbjct: 359 HYVSTGQKVPE 369 >gi|254785488|ref|YP_003072917.1| flagellar biosynthetic protein FlhF [Teredinibacter turnerae T7901] gi|237684381|gb|ACR11645.1| flagellar biosynthetic protein FlhF [Teredinibacter turnerae T7901] Length = 506 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 18/194 (9%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGL-KVMLAAGDTFRSAAIDQLKIWAD 163 D + V VG GVGKTT I KL+ + + D G KV L DT+R A DQL+ Sbjct: 294 DLVQQGGVFAFVGQTGVGKTTTIAKLAARYVLDHGPGKVALITTDTYRVGAYDQLRSLG- 352 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM--IRV 221 + + ++ + L A K+ +++IDTAG H + +L + K+ Sbjct: 353 -RILNVPVRAVDAEHSLLRV----LASLKQFPLILIDTAGFRHGDPLLKEQLRKLDSCPA 407 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 +KR+ A +S Q + A+T A RQ G ++TK+D A G + ++V Sbjct: 408 VKRVLVLACNSQRQTMTASTHAYASRQ--------GIDACVLTKLDEAASLGEALSVLVE 459 Query: 282 HKIPVYFLGVGEGI 295 ++PV + G+ I Sbjct: 460 RQLPVAYTTNGQEI 473 >gi|167838292|ref|ZP_02465151.1| flagellar biosynthesis regulator FlhF [Burkholderia thailandensis MSMB43] Length = 459 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 23/196 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 224 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 283 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + G D A+ + +++IDT G + + I +L D P Sbjct: 284 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 331 Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGTT--------GLIMTKMDGTARGGGLIPIVVT 281 L +L+AT+ + L +V + + + AG + G I+TK+D + GG++ V+ Sbjct: 332 VQRLLLLNATSHGDTLNEVVQAYRSAAGQSEAALPDLAGCILTKLDEASNLGGVLDTVIR 391 Query: 282 HKIPVYFLGVGEGIND 297 +K+PV+++ G+ + + Sbjct: 392 YKLPVHYVSTGQKVPE 407 >gi|229090736|ref|ZP_04221969.1| hypothetical protein bcere0021_15600 [Bacillus cereus Rock3-42] gi|228692678|gb|EEL46404.1| hypothetical protein bcere0021_15600 [Bacillus cereus Rock3-42] Length = 370 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 106/240 (44%), Gaps = 20/240 (8%) Query: 64 QKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118 Q VE+ YA+ + V+ + E+I +L + FN + F I ++G Sbjct: 123 QNDVEQYFIHAYAEKLKVKFENATMITEEEVIKYILEDMRSHFNTENVFEKEVQTIALIG 182 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 GVGKTT + K++ + V D R + QL+ + + + + +A Sbjct: 183 PTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRDEA 240 Query: 179 A---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 A AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + L Sbjct: 241 AMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYICLT 291 Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 + + ++ + + F + G++ TK D TA G L+ I P+ + G+ + Sbjct: 292 LSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 350 >gi|59712443|ref|YP_205219.1| flagellar biosynthesis regulator FlhF [Vibrio fischeri ES114] gi|59480544|gb|AAW86331.1| flagellar regulator FlhF, GTP-binding protein [Vibrio fischeri ES114] Length = 492 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 62/260 (23%), Positives = 125/260 (48%), Gaps = 30/260 (11%) Query: 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 RE L +LI+ + +++++ ++L +DV + + +L+ + + P SK Sbjct: 216 REPLRAMLIKRLEKMGLSEELADQLACY-IPEDVPAKDAWPALLKLLAEQI-PTSK---V 270 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R +I ++G GVGKTT I KL+ + M +V L DTFR A +QL I+ Sbjct: 271 DTLSRGGIIALLGPTGVGKTTTIAKLAARAAMEYGPDQVALVTTDTFRIGAQEQLAIYGR 330 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 ++ + A++ Y Q + ++++DTAG + +R+ + Sbjct: 331 IMGCPVRIAKDADELASVLY------QLRNRRLVLVDTAGMGQRD----------VRLTE 374 Query: 224 RLDPHAPHSVLQ-----VLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 +LD +S Q V+ AT + L++ ++ F + +G I++K+D + G LI Sbjct: 375 QLDTIMENSGSQINSYLVMPATAQRRVLQETIDHFKRIP-LSGCILSKIDESLSLGELIS 433 Query: 278 IVVTHKIPVYFLGVGEGIND 297 + + + +P+ ++ G+ + + Sbjct: 434 VTIENGLPISYIANGQRVPE 453 >gi|116331223|ref|YP_800941.1| flagellar biosynthesis regulator FlhF [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124912|gb|ABJ76183.1| Endoflagellar biosynthesis protein, GTP-binding [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 433 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 35/200 (17%) Query: 113 VILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 V+ +VG G GKTT I KL+ K G V L D +R AAI+QLK +AD F Sbjct: 225 VVFLVGPTGSGKTTSIAKLAAKYFLHMGRSVSLYTTDNYRIAAIEQLKRYADTMGMPFY- 283 Query: 172 SEIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + FK+ A+ ++++IDTAG H N + L+R+ H+ Sbjct: 284 -------PVKDIKKFKETLARDGSELILIDTAGYSHRN----------LEQLERM--HSF 324 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVA---------GTTGLIMTKMDGTARGGGLIPIVVT 281 HS D+ L + +H +++TK+D G + + T Sbjct: 325 HSCFGERDSVENLLVLSAISSYHHTNTVLKAYESLNYRRILLTKLDEADFLGSFLELADT 384 Query: 282 HKIPVYFLGVGEGINDLEPF 301 + + VG+ + PF Sbjct: 385 YSKSFTYFSVGQEV----PF 400 >gi|197335858|ref|YP_002156662.1| flagellar biosynthetic protein FlhF [Vibrio fischeri MJ11] gi|197317348|gb|ACH66795.1| flagellar biosynthetic protein FlhF [Vibrio fischeri MJ11] Length = 492 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 62/260 (23%), Positives = 125/260 (48%), Gaps = 30/260 (11%) Query: 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 RE L +LI+ + +++++ ++L +DV + + +L+ + + P SK Sbjct: 216 REPLRAMLIKRLEKMGLSEELADQLACY-IPEDVPAKDAWPALLKLLAEQI-PTSK---V 270 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R +I ++G GVGKTT I KL+ + M +V L DTFR A +QL I+ Sbjct: 271 DTLSRGGIIALLGPTGVGKTTTIAKLAARAAMEYGPDQVALVTTDTFRIGAQEQLAIYGR 330 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 ++ + A++ Y Q + ++++DTAG + +R+ + Sbjct: 331 IMGCPVRIAKDADELASVLY------QLRNRRLVLVDTAGMGQRD----------VRLTE 374 Query: 224 RLDPHAPHSVLQ-----VLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 +LD +S Q V+ AT + L++ ++ F + +G I++K+D + G LI Sbjct: 375 QLDTIMENSGSQINSYLVMPATAQRRVLQETIDHFKRIP-LSGCILSKIDESLSLGELIS 433 Query: 278 IVVTHKIPVYFLGVGEGIND 297 + + + +P+ ++ G+ + + Sbjct: 434 VTIENGLPISYIANGQRVPE 453 >gi|188991597|ref|YP_001903607.1| flagellar biosynthesis regulator FlhF [Xanthomonas campestris pv. campestris str. B100] gi|167733357|emb|CAP51558.1| flhF Signal recognition 54 kDa protein (SRP54) [Xanthomonas campestris pv. campestris] Length = 590 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 25/192 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADR-----T 165 VI +VG G GKTT I KL+++ + A V L DT R +QL + + Sbjct: 383 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH 442 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 AD S + Y+ +++IDTAG + L A + +R +++ Sbjct: 443 EADSAESLLELLERLRDYK-----------LVLIDTAGMGQRDRALAAQLN-WLRAARQV 490 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 + L VL A + L +V A A G+++TK+D T R G + +VV H++P Sbjct: 491 ------TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMP 544 Query: 286 VYFLGVGEGIND 297 + ++ G+ + D Sbjct: 545 ITWVTDGQRVPD 556 >gi|167034907|ref|YP_001670138.1| flagellar biosynthesis regulator FlhF [Pseudomonas putida GB-1] gi|166861395|gb|ABY99802.1| GTP-binding signal recognition particle SRP54 G- domain [Pseudomonas putida GB-1] Length = 435 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D+FR A +QLK + Sbjct: 218 VIAMVGPAGMGKTTTLAKLAARYVLKYGAQNLALVSMDSFRIGAQEQLKTLGRILNVPVT 277 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G AA A E + + V++IDTAG ++ L + G+ I L Sbjct: 278 YVDPGQSLAA-ALEPLLRKR-----VVLIDTAGLQASDPALRMQLETLAGRGIAAKNYL- 330 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + ++H++PV Sbjct: 331 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISHELPV 381 Query: 287 YFLGVGEGIND 297 +L G I D Sbjct: 382 AYLTDGPRIPD 392 >gi|116328493|ref|YP_798213.1| flagellar biosynthesis regulator FlhF [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121237|gb|ABJ79280.1| Endoflagellar biosynthesis protein, GTP-binding [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 433 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 35/200 (17%) Query: 113 VILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 V+ +VG G GKTT I KL+ K G V L D +R AAI+QLK +AD F Sbjct: 225 VVFLVGPTGSGKTTSIAKLAAKYFLHMGRSVSLYTTDNYRIAAIEQLKRYADTMGMPFY- 283 Query: 172 SEIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + FK+ A+ ++++IDTAG H N + L+R+ H+ Sbjct: 284 -------PVKDIKKFKETLARDGSELILIDTAGYSHRN----------LEQLERM--HSF 324 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVA---------GTTGLIMTKMDGTARGGGLIPIVVT 281 HS D+ L + +H +++TK+D G + + T Sbjct: 325 HSCFGERDSVENLLVLSAISSYHHTNTVLKAYESLNYRRILLTKLDEADFLGSFLELADT 384 Query: 282 HKIPVYFLGVGEGINDLEPF 301 + + VG+ + PF Sbjct: 385 YSKSFTYFSVGQEV----PF 400 >gi|269836604|ref|YP_003318832.1| GTP-binding signal recognition particle SRP54 G- domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269785867|gb|ACZ38010.1| GTP-binding signal recognition particle SRP54 G- domain protein [Sphaerobacter thermophilus DSM 20745] Length = 358 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 15/191 (7%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 H V +VG +GVGKTT I KL+ S G +V L DT+R I QLK +A+ Sbjct: 152 HERVVAALVGPSGVGKTTTIAKLAAIFSATRGRRVALVTTDTYRVGGIAQLKTFAEILQL 211 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL-D 226 F D L + + A+A D++++DT G ++ M+R ++ L Sbjct: 212 PFYTVYTRED---LDHALEETAEA---DLVLVDTPGCNPYDA-------AMLREMRNLIG 258 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 + P + L T + L A+ GLI TK+D T R +I +V ++P+ Sbjct: 259 SNTPVTCYLTLAMTGDFDELIAASQRFALLNPAGLIATKLDETRRAPAVIGLVEQTRLPL 318 Query: 287 YFLGVGEGIND 297 + G + D Sbjct: 319 TYTCAGPLVPD 329 >gi|118475040|ref|YP_892642.1| flagellar biosynthesis regulator FlhF [Campylobacter fetus subsp. fetus 82-40] gi|261885660|ref|ZP_06009699.1| flagellar biosynthesis regulator FlhF [Campylobacter fetus subsp. venerealis str. Azul-94] gi|118414266|gb|ABK82686.1| flagellar biosynthesis protein [Campylobacter fetus subsp. fetus 82-40] Length = 435 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 62/243 (25%), Positives = 103/243 (42%), Gaps = 26/243 (10%) Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 A+ Q ++ + +V+R Y L+ ML S+ S + +++ VG Sbjct: 185 AIMQTTIQNMPASMKNNPSAVKRYFY---SLLRNMLPCRSESLE---SKKQRIMMFVGPT 238 Query: 121 GVGKTTVIGKLSKKMSDAG---LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 GVGKTT + KL+ K + +G K + DT+R A++QL +A S + Sbjct: 239 GVGKTTTLSKLAYKFAHSGDIRYKTGIITLDTYRLGAVEQLFQYAKIMSIPIL------- 291 Query: 178 AAALAYEAFKQA--QAKKVDVLIIDTAG-RLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 A+ E FK A D+++IDT G ++ L+ G + ++D V Sbjct: 292 -DAIELEDFKSALKSLASCDLILIDTMGSSQYDKDKLIKLNGFLKGCGTKID------VN 344 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VL A + L ++ + LI+TK D T G + +V PV F G+ Sbjct: 345 LVLSAGSKIEDLIEIYNNFSFLDIDTLIITKFDETKIFGNVFSLVYDTNTPVSFFSTGQN 404 Query: 295 IND 297 + D Sbjct: 405 VPD 407 >gi|304316888|ref|YP_003852033.1| flagellar biosynthetic protein FlhF [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778390|gb|ADL68949.1| flagellar biosynthetic protein FlhF [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 337 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 13/185 (7%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 ++ +G GVGKTT I K++ + K V+L D FR A +QLKI+ + Sbjct: 147 VVFIGPTGVGKTTTIAKIASHLILREKKNVLLITADIFRIAGAEQLKIYGEILGVPVKVV 206 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 D L +++ D+++IDTAGR H +S KM + L + Sbjct: 207 NNIFDLNRL------ESEISNYDIVLIDTAGRSHTDS------RKMQELKTFLQYGSYDD 254 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 + L ATT + +++ + L+ TK+D T ++ + K P+ ++ G Sbjct: 255 IYLCLSATTKNSDAKKIIKSYDFINDYNLLFTKLDETDNYSVILNSIYYSKKPISYVTTG 314 Query: 293 EGIND 297 + + D Sbjct: 315 QIVPD 319 >gi|332981454|ref|YP_004462895.1| flagellar biosynthetic protein FlhF [Mahella australiensis 50-1 BON] gi|332699132|gb|AEE96073.1| flagellar biosynthetic protein FlhF [Mahella australiensis 50-1 BON] Length = 353 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 61/248 (24%), Positives = 115/248 (46%), Gaps = 20/248 (8%) Query: 51 DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110 D+L D+ +A +I+++ + D+ Q+ + DV + +P+S + R Sbjct: 108 DILSAHDVNPDIASEIMDKAMAIYKGGDM--QQCVEDVIKEYLGQPVPISLD-----NGR 160 Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 VI+ +G GVGKTT + KL+ G KV L DT+R AA++QL+ ++D Sbjct: 161 QSVIIFLGPTGVGKTTTLAKLAAYYGIQLGKKVALITADTYRIAAVEQLRTYSDIMQLPL 220 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + + L E + + A D+++IDT GR N+ + GI + ++K Sbjct: 221 ---SVVYSSNELKQEIGRYSDA---DIIMIDTPGRSPND---IDGINDIKDLIK---ASE 268 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P V ++ A+ A +++ L+ TK+D T G ++ + + P+ ++ Sbjct: 269 PTDVFLLVSASFNYAACQRLWQRFGDIEDIRLLFTKLDETDCWGTILNMRHISRRPLSYI 328 Query: 290 GVGEGIND 297 G+ + D Sbjct: 329 TDGQVVPD 336 >gi|224373371|ref|YP_002607743.1| flagellar biosynthesis regulator FlhF [Nautilia profundicola AmH] gi|223588735|gb|ACM92471.1| flagellar biosynthesis protein flhf flagella associated gtp-bindingprotein [Nautilia profundicola AmH] Length = 416 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 19/194 (9%) Query: 111 PH--VILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 PH +++ VG GVGKTT I KL+ + + KV + DT+R A++QL +A Sbjct: 215 PHKKIMMFVGPTGVGKTTTIAKLAARYAYKLSQRHKVGIITLDTYRIGAVEQLMTYAKMM 274 Query: 166 SADFVCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 SD F+ A + D ++IDT G ++ I K+ LK Sbjct: 275 RLPIETVVDPSD--------FEDALNSLRHNDYILIDTVGSSQHDK---EKIEKLKSFLK 323 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 +D A ++ VL A T L + ++ + TK+D T G + +++ K Sbjct: 324 -VDTFAEININLVLSAVTKYEDLVDIYKNFSILPIDTFVFTKLDETKTYGNIFSLLLDTK 382 Query: 284 IPVYFLGVGEGIND 297 PV + +G+ + D Sbjct: 383 KPVSYFSIGQEVPD 396 >gi|327398762|ref|YP_004339631.1| flagellar biosynthetic protein FlhF [Hippea maritima DSM 10411] gi|327181391|gb|AEA33572.1| flagellar biosynthetic protein FlhF [Hippea maritima DSM 10411] Length = 398 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 21/189 (11%) Query: 114 ILVVGVNGVGKTTVIGKLS---KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 I+++G GVGKTT + KL+ K D KV + DT+R A+DQL +A + Sbjct: 204 IVLLGPTGVGKTTTLAKLAAIYKLKQDK--KVGIITTDTYRIGAVDQLLNYAKIMDIPAI 261 Query: 171 CSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 S + E FK A + K ++V+++DT GR + + + ++ + K D Sbjct: 262 VS--------ITKEDFKNALEELKDMNVVLVDTVGRSPQD---IKRLNELFGIFKNED-- 308 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 H L V+ T + + + LI TK+D T G ++ +VV K PV + Sbjct: 309 RLHLSL-VMAVNTKEEDCLNIHKRFGILPIDDLIFTKVDETKTPGSMLNLVVKLKKPVSY 367 Query: 289 LGVGEGIND 297 + G+ + D Sbjct: 368 VSFGQDVPD 376 >gi|254522702|ref|ZP_05134757.1| flagellar biosynthetic protein FlhF [Stenotrophomonas sp. SKA14] gi|219720293|gb|EED38818.1| flagellar biosynthetic protein FlhF [Stenotrophomonas sp. SKA14] Length = 540 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 15/187 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G GKTT I KL+ + ++ A V L DT R A +QL + + Sbjct: 333 VIALVGPTGAGKTTTIAKLASRFAEKHAPRDVALVTTDTTRIGAREQLYGYGRQLGIAVH 392 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + G+D L + K +++IDTAG + L A + + +R +++ Sbjct: 393 EANSGTDLDQLLE------RLKDYKLVLIDTAGLGPRDRALAAQL-QWLRAARQV----- 440 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 L VL A T + +V A GL+++K+D T R G + + V H +P+ ++ Sbjct: 441 -RTLLVLPANTSFGDMDEVVRRFGAANLQGLVLSKLDETGRFGNALSVAVDHALPITWVT 499 Query: 291 VGEGIND 297 G+ + + Sbjct: 500 DGQDVPE 506 >gi|167564490|ref|ZP_02357406.1| flagellar biosynthesis regulator FlhF [Burkholderia oklahomensis EO147] Length = 389 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 23/196 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 154 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 213 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + G D A+ + +++IDT G + + + I +L D P Sbjct: 214 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRM----VSDQIAMLHGAD--TP 261 Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPIVVT 281 L +L+AT+ + L +V + + + AG G I+TK+D + GG++ V+ Sbjct: 262 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPEAALPDLAGCILTKLDEASNLGGVLDTVIR 321 Query: 282 HKIPVYFLGVGEGIND 297 +K+PV+++ G+ + + Sbjct: 322 YKLPVHYVSTGQKVPE 337 >gi|307720634|ref|YP_003891774.1| flagellar biosynthetic protein FlhF [Sulfurimonas autotrophica DSM 16294] gi|306978727|gb|ADN08762.1| flagellar biosynthetic protein FlhF [Sulfurimonas autotrophica DSM 16294] Length = 426 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 15/205 (7%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 VI++VG GVGKTT I KL+ + S + KV L DT+R A++QL +A R Sbjct: 225 VIMLVGPTGVGKTTSIAKLAARYSFLMEKKYKVGLVVLDTYRIGAVEQLMQYA-RMMKLG 283 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + + + + A E+ K D ++IDT G + + I K+ L + Sbjct: 284 IETVVDPPEFSNALESLKYC-----DYILIDTMGSSPYDRV---KIEKIYECLNANNTEY 335 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 V+ V+ ++ L+ + G L+ TK+D T G + + K P+ + Sbjct: 336 NVDVVLVMPSSIKYEDLKVTYDNFSTLGVDTLMFTKLDETMGFGNIFSLAYETKKPISYF 395 Query: 290 GVGEGINDLEPFVAKDFSAVITGCL 314 VG+ + + + DF + CL Sbjct: 396 SVGQEVPEDLVCASSDF---LIECL 417 >gi|21231356|ref|NP_637273.1| flagellar biosynthesis regulator FlhF [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768591|ref|YP_243353.1| flagellar biosynthesis regulator FlhF [Xanthomonas campestris pv. campestris str. 8004] gi|21113017|gb|AAM41197.1| flagellar biosynthetic protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573923|gb|AAY49333.1| flagellar biosynthetic protein [Xanthomonas campestris pv. campestris str. 8004] Length = 555 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 25/192 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADR-----T 165 VI +VG G GKTT I KL+++ + A V L DT R +QL + + Sbjct: 348 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH 407 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 AD S + Y+ +++IDTAG + L A + +R +++ Sbjct: 408 EADSAESLLELLERLRDYK-----------LVLIDTAGMGQRDRALAAQLN-WLRAARQV 455 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 + L VL A + L +V A A G+++TK+D T R G + +VV H++P Sbjct: 456 ------TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMP 509 Query: 286 VYFLGVGEGIND 297 + ++ G+ + D Sbjct: 510 ITWVTDGQRVPD 521 >gi|315638328|ref|ZP_07893508.1| flagellar biosynthesis (GTP-binding) protein FlhF [Campylobacter upsaliensis JV21] gi|315481595|gb|EFU72219.1| flagellar biosynthesis (GTP-binding) protein FlhF [Campylobacter upsaliensis JV21] Length = 453 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 13/187 (6%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 ++++VG GVGKTT + KL+ + + D K + DT+R A++QL +A + Sbjct: 254 IMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPII 313 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 S D EA K + +V+++DT G + +A + + + +A Sbjct: 314 DSIEPKDLD----EAIKSLSS--CEVILVDTIGNSQYDQTKLAKTKEFL-----MHSNAE 362 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 V V+ A T L ++ + LI+TK D T G + ++ +P+ F Sbjct: 363 IDVNLVISANTKYEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLIYEINVPLSFFS 422 Query: 291 VGEGIND 297 VG+ + D Sbjct: 423 VGQEVPD 429 >gi|313497814|gb|ADR59180.1| FlhF [Pseudomonas putida BIRD-1] Length = 435 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D+FR A +QLK + Sbjct: 218 VIAMVGPAGMGKTTTLAKLAARYVLKYGAQNLALVSMDSFRIGAQEQLKTLGRILNVPVT 277 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G AA A E + + V++IDTAG ++ L + G+ I L Sbjct: 278 YVDPGQSLAA-ALEPLLRKR-----VVLIDTAGLQASDPALRMQLETLAGRGIAAKNYL- 330 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + ++H++PV Sbjct: 331 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISHELPV 381 Query: 287 YFLGVGEGIND 297 +L G I D Sbjct: 382 AYLTDGPRIPD 392 >gi|26991033|ref|NP_746458.1| flagellar biosynthesis regulator FlhF [Pseudomonas putida KT2440] gi|24986064|gb|AAN69922.1|AE016631_1 flagellar biosynthetic protein FlhF [Pseudomonas putida KT2440] Length = 435 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D+FR A +QLK + Sbjct: 218 VIAMVGPAGMGKTTTLAKLAARYVLKYGAQNLALVSMDSFRIGAQEQLKTLGRILNVPVT 277 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G AA A E + + V++IDTAG ++ L + G+ I L Sbjct: 278 YVDPGQSLAA-ALEPLLRKR-----VVLIDTAGLQASDPALRMQLETLAGRGIAAKNYL- 330 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + ++H++PV Sbjct: 331 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISHELPV 381 Query: 287 YFLGVGEGIND 297 +L G I D Sbjct: 382 AYLTDGPRIPD 392 >gi|148546763|ref|YP_001266865.1| flagellar biosynthesis regulator FlhF [Pseudomonas putida F1] gi|148510821|gb|ABQ77681.1| GTP-binding signal recognition particle SRP54, G- domain [Pseudomonas putida F1] Length = 435 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D+FR A +QLK + Sbjct: 218 VIAMVGPAGMGKTTTLAKLAARYVLKYGAQNLALVSMDSFRIGAQEQLKTLGRILNVPVT 277 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G AA A E + + V++IDTAG ++ L + G+ I L Sbjct: 278 YVDPGQSLAA-ALEPLLRKR-----VVLIDTAGLQASDPALRMQLETLAGRGIAAKNYL- 330 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + ++H++PV Sbjct: 331 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISHELPV 381 Query: 287 YFLGVGEGIND 297 +L G I D Sbjct: 382 AYLTDGPRIPD 392 >gi|194365641|ref|YP_002028251.1| flagellar biosynthesis regulator FlhF [Stenotrophomonas maltophilia R551-3] gi|194348445|gb|ACF51568.1| GTP-binding signal recognition particle SRP54 G- domain [Stenotrophomonas maltophilia R551-3] Length = 542 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 15/187 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G GKTT I KL+ + ++ A V L DT R A +QL + + Sbjct: 335 VIALVGPTGAGKTTTIAKLASRFAEKHAPRDVALVTTDTTRIGAREQLYGYGRQLGIAVH 394 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + G+D L + K +++IDTAG + L A + + +R +++ Sbjct: 395 EANSGTDLDQLLE------RLKDYKLVLIDTAGLGPRDRALAAQL-QWLRAARQV----- 442 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 L VL A T + +V A GL+++K+D T R G + + V H +P+ ++ Sbjct: 443 -RTLLVLPANTSFGDMDEVVRRFGAANLQGLVLSKLDETGRFGNALSVAVDHALPITWVT 501 Query: 291 VGEGIND 297 G+ + + Sbjct: 502 DGQDVPE 508 >gi|78221648|ref|YP_383395.1| GTP-binding signal recognition particle [Geobacter metallireducens GS-15] gi|78192903|gb|ABB30670.1| GTP-binding signal recognition particle SRP54, G-domain [Geobacter metallireducens GS-15] Length = 452 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 14/191 (7%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P ++ +VG GVGKTT I KL+ + + L D FR A++QLK ++ Sbjct: 257 PRIVALVGPTGVGKTTTIAKLAAHYALRENHRAALITIDNFRVGAVEQLKTYSRIMG--- 313 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V E+ S A L EA + + K ++++IDTAGR H ++ + + + ++ H Sbjct: 314 VPVEVASTPAEL--EAAIELHSDK-ELILIDTAGRSHKDNEKIEELKGFLESRFAIEIHL 370 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 L ATT + +V V + +I TK+D + G ++ + K P+ + Sbjct: 371 ------CLAATTRDREILEVVERFGVLPISRVIFTKLDESESYGTIVNAHLRTKFPLSYF 424 Query: 290 GVGEGI-NDLE 299 G+ + DLE Sbjct: 425 TTGQRVPEDLE 435 >gi|167896337|ref|ZP_02483739.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei 7894] Length = 360 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 23/199 (11%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 R V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 122 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV 181 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + G D A+ + +++IDT G + + I +L D Sbjct: 182 PVHAVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD- 230 Query: 228 HAPHSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPI 278 P L +L+AT+ + L +V + + + AG G I+TK+D + GG++ Sbjct: 231 -TPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDT 289 Query: 279 VVTHKIPVYFLGVGEGIND 297 V+ +K+PV+++ G+ + + Sbjct: 290 VIRYKLPVHYVSTGQKVPE 308 >gi|167571640|ref|ZP_02364514.1| flagellar biosynthesis regulator FlhF [Burkholderia oklahomensis C6786] Length = 383 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 92/200 (46%), Gaps = 23/200 (11%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 R V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 144 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 203 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + G D A+ + +++IDT G + + + I +L D Sbjct: 204 VPVHAVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRM----VSDQIAMLYGAD 253 Query: 227 PHAPHSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIP 277 P L +L+AT+ + L +V + + + AG G I+TK+D + GG++ Sbjct: 254 --TPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPEAALPDLAGCILTKLDEASNLGGVLD 311 Query: 278 IVVTHKIPVYFLGVGEGIND 297 V+ +K+PV+++ G+ + + Sbjct: 312 TVIRYKLPVHYVSTGQKVPE 331 >gi|167904711|ref|ZP_02491916.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei NCTC 13177] Length = 391 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 23/196 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 156 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 215 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + G D A+ + +++IDT G + + I +L D P Sbjct: 216 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 263 Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPIVVT 281 L +L+AT+ + L +V + + + AG G I+TK+D + GG++ V+ Sbjct: 264 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIR 323 Query: 282 HKIPVYFLGVGEGIND 297 +K+PV+++ G+ + + Sbjct: 324 YKLPVHYVSTGQKVPE 339 >gi|58426836|gb|AAW75873.1| flagellar biosynthetic protein FlhF [Xanthomonas oryzae pv. oryzae KACC10331] Length = 610 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 92/187 (49%), Gaps = 15/187 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G GKTT I KL+++ + V L DT R +QL + + Sbjct: 403 VIALVGPTGAGKTTTIAKLAQRFAAQHTPRDVALVTTDTQRVGGREQLHSYGRQ----LG 458 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + +D+A + F++ + K+ ++IDTAG + L A + +R +++ Sbjct: 459 VAVHEADSAESLLDLFERLRDYKL--VLIDTAGMGQRDRALAAQLN-WLRAAQQV----- 510 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 + L VL A + L +V A A G+++TK+D T R G + +VV H++P+ ++ Sbjct: 511 -TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVT 569 Query: 291 VGEGIND 297 G+ + D Sbjct: 570 DGQRVPD 576 >gi|167826239|ref|ZP_02457710.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei 9] Length = 369 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 23/199 (11%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 R V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 131 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV 190 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + G D A+ + +++IDT G + + I +L D Sbjct: 191 PVHAVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD- 239 Query: 228 HAPHSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPI 278 P L +L+AT+ + L +V + + + AG G I+TK+D + GG++ Sbjct: 240 -TPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDT 298 Query: 279 VVTHKIPVYFLGVGEGIND 297 V+ +K+PV+++ G+ + + Sbjct: 299 VIRYKLPVHYVSTGQKVPE 317 >gi|167817861|ref|ZP_02449541.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei 91] Length = 384 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 91/200 (45%), Gaps = 23/200 (11%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 R V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 145 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 204 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + G D A+ + +++IDT G + + I +L D Sbjct: 205 VPVHAVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD 254 Query: 227 PHAPHSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIP 277 P L +L+AT+ + L +V + + + AG G I+TK+D + GG++ Sbjct: 255 --TPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLD 312 Query: 278 IVVTHKIPVYFLGVGEGIND 297 V+ +K+PV+++ G+ + + Sbjct: 313 TVIRYKLPVHYVSTGQKVPE 332 >gi|167912989|ref|ZP_02500080.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei 112] Length = 386 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 91/200 (45%), Gaps = 23/200 (11%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 R V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 147 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 206 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + G D A+ + +++IDT G + + I +L D Sbjct: 207 VPVHAVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD 256 Query: 227 PHAPHSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIP 277 P L +L+AT+ + L +V + + + AG G I+TK+D + GG++ Sbjct: 257 --TPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLD 314 Query: 278 IVVTHKIPVYFLGVGEGIND 297 V+ +K+PV+++ G+ + + Sbjct: 315 TVIRYKLPVHYVSTGQKVPE 334 >gi|206558547|ref|YP_002229307.1| flagellar biosynthesis regulator FlhF [Burkholderia cenocepacia J2315] gi|198034584|emb|CAR50450.1| putative flagellar biosynthesis protein [Burkholderia cenocepacia J2315] Length = 599 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 18/191 (9%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ V Sbjct: 369 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 425 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 DA LA ++ + +++IDT G + + I +L +AP Sbjct: 426 PVHAVKDAGDLA---LALSELRNKHIVLIDTIGMSQRDR----AVSDQIAMLH--GANAP 476 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHKIPV 286 L +L+AT+ + L +V + AG G I+TK+D GG++ V+ +K+PV Sbjct: 477 VQRLLLLNATSHGDTLNEVVQAYRSAGEHPDLAGCILTKLDEATHLGGVLDTVIRYKLPV 536 Query: 287 YFLGVGEGIND 297 +++ G+ + + Sbjct: 537 HYVSTGQKVPE 547 >gi|167740653|ref|ZP_02413427.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei 14] gi|167847747|ref|ZP_02473255.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei B7210] Length = 367 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 23/199 (11%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 R V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 129 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV 188 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + G D A+ + +++IDT G + + I +L D Sbjct: 189 PVHAVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD- 237 Query: 228 HAPHSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPI 278 P L +L+AT+ + L +V + + + AG G I+TK+D + GG++ Sbjct: 238 -TPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDT 296 Query: 279 VVTHKIPVYFLGVGEGIND 297 V+ +K+PV+++ G+ + + Sbjct: 297 VIRYKLPVHYVSTGQKVPE 315 >gi|325917847|ref|ZP_08180025.1| flagellar GTP-binding protein [Xanthomonas vesicatoria ATCC 35937] gi|325535931|gb|EGD07749.1| flagellar GTP-binding protein [Xanthomonas vesicatoria ATCC 35937] Length = 331 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 15/187 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G GKTT I KL+++ + A V L DT R +QL + + Sbjct: 124 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTLRVGGREQLHSYGRQLG--IA 181 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 E +D+A E + + K+ ++IDTAG + L A + +R +++ Sbjct: 182 VHE--ADSAESLLELLDRLRDYKL--VLIDTAGMGQRDRALAAQL-NWLRAAQQV----- 231 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 + L VL A + L +V A A G+++TK+D T R G + +VV H++P+ ++ Sbjct: 232 -TSLLVLPANSHFADLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQLPITWVT 290 Query: 291 VGEGIND 297 G+ + D Sbjct: 291 DGQRVPD 297 >gi|228984856|ref|ZP_04145026.1| hypothetical protein bthur0001_15580 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774806|gb|EEM23202.1| hypothetical protein bthur0001_15580 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 436 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/241 (23%), Positives = 105/241 (43%), Gaps = 18/241 (7%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + V+ + E+I +L + FN + F I + Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC--SEI 174 +G GVGKTT + K++ + V D R + QL+ + + + E+ Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEV 306 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 AL Y FK + +VD ++IDTAG+ + S + +MI + +++P + L Sbjct: 307 AM-TRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYICL 356 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 357 TLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQD 415 Query: 295 I 295 + Sbjct: 416 V 416 >gi|167721671|ref|ZP_02404907.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei DM98] Length = 367 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 23/199 (11%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 R V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 129 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV 188 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + G D A+ + +++IDT G + + I +L D Sbjct: 189 PVHAVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD- 237 Query: 228 HAPHSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPI 278 P L +L+AT+ + L +V + + + AG G I+TK+D + GG++ Sbjct: 238 -TPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDT 296 Query: 279 VVTHKIPVYFLGVGEGIND 297 V+ +K+PV+++ G+ + + Sbjct: 297 VIRYKLPVHYVSTGQKVPE 315 >gi|229029451|ref|ZP_04185534.1| hypothetical protein bcere0028_15420 [Bacillus cereus AH1271] gi|228731910|gb|EEL82809.1| hypothetical protein bcere0028_15420 [Bacillus cereus AH1271] Length = 436 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 106/242 (43%), Gaps = 20/242 (8%) Query: 62 VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116 + Q VE+ YA+ + V+ + E+I +L + FN + F I + Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIGYILEDMRSHFNTENVFEKEVQTIAL 246 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 +G GVGKTT + K++ + V D R + QL+ + + + + Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTMGFEVIA--VRD 304 Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 +AA AL Y FK+ VD ++IDTAG+ + S + +MI + +++P + Sbjct: 305 EAAMTRALTY--FKEEAC--VDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L + + ++ + + F + G++ TK D TA G L+ I P+ + G+ Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414 Query: 294 GI 295 + Sbjct: 415 DV 416 >gi|170731606|ref|YP_001763553.1| flagellar biosynthesis regulator FlhF [Burkholderia cenocepacia MC0-3] gi|169814848|gb|ACA89431.1| GTP-binding signal recognition particle SRP54 G- domain [Burkholderia cenocepacia MC0-3] Length = 582 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 18/191 (9%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ V Sbjct: 352 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 408 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 DA LA ++ + +++IDT G + + I +L + AP Sbjct: 409 PVHAVKDAGDLA---LALSELRNKHIVLIDTIGMSQRDR----AVSDQIAMLHGAN--AP 459 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHKIPV 286 L +L+AT+ + L +V + AG G I+TK+D GG++ V+ +K+PV Sbjct: 460 VQRLLLLNATSHGDTLNEVVQAYRSAGDHPDLAGCILTKLDEATHLGGVLDTVIRYKLPV 519 Query: 287 YFLGVGEGIND 297 +++ G+ + + Sbjct: 520 HYVSTGQKVPE 530 >gi|70943367|ref|XP_741738.1| signal recognition particle 54 kDa protein [Plasmodium chabaudi chabaudi] gi|56520308|emb|CAH81656.1| signal recognition particle 54 kDa protein, putative [Plasmodium chabaudi chabaudi] Length = 279 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 41/78 (52%) Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 D+ GQ+ Q F +I+TK+DG A+GGG + V P+ F+G GE +ND Sbjct: 1 DSHIGQSCHDQAMAFKNSVKVGSIIITKIDGHAKGGGALSAVSAIGCPITFIGTGEHVND 60 Query: 298 LEPFVAKDFSAVITGCLD 315 E F AK F + + G D Sbjct: 61 FEKFEAKSFVSRLLGLGD 78 >gi|53724310|ref|YP_104356.1| flagellar biosynthesis regulator FlhF [Burkholderia mallei ATCC 23344] gi|67639809|ref|ZP_00438642.1| flagellar biosynthesis protein FlhF [Burkholderia mallei GB8 horse 4] gi|121598247|ref|YP_994699.1| putative flagellar biosynthetic protein FlhF [Burkholderia mallei SAVP1] gi|124385699|ref|YP_001027677.1| putative flagellar biosynthetic protein FlhF [Burkholderia mallei NCTC 10229] gi|167002949|ref|ZP_02268739.1| putative flagellar biosynthetic protein FlhF [Burkholderia mallei PRL-20] gi|52427733|gb|AAU48326.1| flagellar biosynthetic protein FlhF, putative [Burkholderia mallei ATCC 23344] gi|121227057|gb|ABM49575.1| putative flagellar biosynthetic protein FlhF [Burkholderia mallei SAVP1] gi|238520419|gb|EEP83879.1| flagellar biosynthesis protein FlhF [Burkholderia mallei GB8 horse 4] gi|243061440|gb|EES43626.1| putative flagellar biosynthetic protein FlhF [Burkholderia mallei PRL-20] Length = 374 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 23/199 (11%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 R V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV 195 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + G D A+ + +++IDT G + + I +L D Sbjct: 196 PVHAVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD- 244 Query: 228 HAPHSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPI 278 P L +L+AT+ + L +V + + + AG G I+TK+D + GG++ Sbjct: 245 -TPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDT 303 Query: 279 VVTHKIPVYFLGVGEGIND 297 V+ +K+PV+++ G+ + + Sbjct: 304 VIRYKLPVHYVSTGQKVPE 322 >gi|218778855|ref|YP_002430173.1| GTP-binding signal recognition particle SRP54 G- domain protein [Desulfatibacillum alkenivorans AK-01] gi|218760239|gb|ACL02705.1| Flagellar biosynthesis regulator FlhF (GTP-binding signal recognition particle SRP54 G- domain protein) [Desulfatibacillum alkenivorans AK-01] Length = 393 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 95/226 (42%), Gaps = 37/226 (16%) Query: 87 DVSELIHKMLMPLSKPFNWDFSHRP-------HVILVVGVNGVGKTTVIGKLSKKMSDAG 139 D + L ++ + K FN+ RP V VG GVGKTT I KL+ + Sbjct: 152 DPARLFKAVMNLVLKGFNF---SRPCEIKAGQAVCAFVGPTGVGKTTTIAKLAADLHLTR 208 Query: 140 LK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV---- 194 K V L + D +R A +QLK +A S +AF Q + Sbjct: 209 KKNVGLLSIDNYRIGAAEQLKTYA-------------SILGLPCLQAFNQKDLQYALGRL 255 Query: 195 ---DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 DV++IDTAG+ ++ M + + +R+D H VL A T ++ + + Sbjct: 256 ADKDVVLIDTAGQSQYDTQRMREMEALFDGERRIDIHL------VLSAVTCESEMEETAK 309 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 + + TK D T + G ++ V+ +PV F+ G+ + + Sbjct: 310 RFGGLDFSSYVFTKTDETKKRGAIVNQVLKRPMPVSFISTGQRVPE 355 >gi|167582697|ref|ZP_02375571.1| flagellar biosynthesis regulator FlhF [Burkholderia thailandensis TXDOH] Length = 506 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 23/196 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 271 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 330 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + G D A+ + +++IDT G + + I +L D P Sbjct: 331 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 378 Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPIVVT 281 L +L+AT+ + L +V + + + AG G I+TK+D + GG++ V+ Sbjct: 379 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPRSALPDLAGCILTKLDEASNLGGVLDTVIR 438 Query: 282 HKIPVYFLGVGEGIND 297 +K+PV+++ G+ + + Sbjct: 439 YKLPVHYVSTGQKVPE 454 >gi|122879200|ref|YP_201258.6| flagellar biosynthesis regulator FlhF [Xanthomonas oryzae pv. oryzae KACC10331] Length = 552 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 15/187 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G GKTT I KL+++ + V L DT R +QL + + Sbjct: 345 VIALVGPTGAGKTTTIAKLAQRFAAQHTPRDVALVTTDTQRVGGREQLHSYGRQLG--VA 402 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 E +D+A + F++ + K+ ++IDTAG + L A + +R +++ Sbjct: 403 VHE--ADSAESLLDLFERLRDYKL--VLIDTAGMGQRDRALAAQLN-WLRAAQQV----- 452 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 + L VL A + L +V A A G+++TK+D T R G + +VV H++P+ ++ Sbjct: 453 -TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVT 511 Query: 291 VGEGIND 297 G+ + D Sbjct: 512 DGQRVPD 518 >gi|255322023|ref|ZP_05363173.1| glutamine synthetase 1 [Campylobacter showae RM3277] gi|255301127|gb|EET80394.1| glutamine synthetase 1 [Campylobacter showae RM3277] Length = 488 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 66/256 (25%), Positives = 112/256 (43%), Gaps = 34/256 (13%) Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 VE + + A +V+R S L+ KML S+ + + ++++VG GVGKTT Sbjct: 249 VENMSPQMKANPTAVRRYF---SSLLRKMLPCRSE----EDDRKQKIMMLVGPTGVGKTT 301 Query: 127 VIGKLSKKMSDAG---LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 + KL+ + + K + DT+R A++QL +A + + Sbjct: 302 TLAKLAARFAYGDGKRAKTGIITLDTYRIGAVEQLFQYAKMMKLPIL--------DVIEV 353 Query: 184 EAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDAT 240 + FK A Q +V++IDT G + + ++ + LK D H H VL + Sbjct: 354 DDFKNALKQLNHCEVILIDTTGSSQYDK---EKLSRLEKFLKSSDTHIDVHLVL-----S 405 Query: 241 TGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 G +E+++ + LI+TK D T G + +V PV F VG+ + D Sbjct: 406 AGAKIEDMLEIYNGFSFLDIDTLIITKFDETKIFGNVFSLVYETNKPVSFFSVGQEVPD- 464 Query: 299 EPFVAKDFSAVITGCL 314 + VAK S + C+ Sbjct: 465 DILVAK--SEFLVSCV 478 >gi|229544413|ref|ZP_04433471.1| GTP-binding signal recognition particle SRP54 G- domain protein [Bacillus coagulans 36D1] gi|229324898|gb|EEN90575.1| GTP-binding signal recognition particle SRP54 G- domain protein [Bacillus coagulans 36D1] Length = 375 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 65/264 (24%), Positives = 120/264 (45%), Gaps = 31/264 (11%) Query: 38 SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM 97 +RL+ G+++ L++ L+ V + + EE ++ +++ +L L+ K L Sbjct: 119 QKRLNTGLQQGLDESLL-----VVIGDALYEEW--EKANGNLTENEILKQAKALLQKKLA 171 Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAID 156 L+ + S + +V L+ G GVGKTT + K++ + + + K+ DT+R AAI+ Sbjct: 172 HLT----YGGSQKKYVNLI-GPTGVGKTTTLAKMAAQAVLEKKEKIAFITTDTYRIAAIE 226 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK--KVDVLIIDTAGRLHNNSILMAG 214 QLK +A+ + SD FK+A K D + IDTAGR + + Sbjct: 227 QLKTYANLLNVPLEVVYKLSD--------FKKAIEKFSDFDRVFIDTAGRNYRELQYVRE 278 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV-EMFHAVAGTTGLIMTKMDGTARGG 273 + +I D HA L T + ++ V + F ++ I TK+D T+ G Sbjct: 279 LSGLI------DFHAEMETFLTLSLTMKEKDMKAVFDSFQSIR-IDRFIFTKLDETSTYG 331 Query: 274 GLIPIVVTHKIPVYFLGVGEGIND 297 I ++ + ++ G+ + D Sbjct: 332 AAINLMEQYGKGCAYVTNGQDVPD 355 >gi|152990365|ref|YP_001356087.1| flagellar biosynthesis protein FlhF [Nitratiruptor sp. SB155-2] gi|151422226|dbj|BAF69730.1| flagellar biosynthesis protein FlhF [Nitratiruptor sp. SB155-2] Length = 391 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 63/255 (24%), Positives = 115/255 (45%), Gaps = 22/255 (8%) Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107 EL LLI +D+ VA+ +V+E D+ ++ + S + + K + Sbjct: 131 ELIKLLIENDVDPKVAKMLVKE----SCGLDIDTNKLDLNTSFFKEALTTAIEKKIKFRG 186 Query: 108 SHRPH-----VILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIW 161 + VI VG GVGKTT + K++ ++ + LK+ + + DTF+ A+ Q + + Sbjct: 187 PLKIQKGNFKVIAFVGPTGVGKTTNLFKIASELVINQKLKIAVISIDTFKVGAVQQARSF 246 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQA-KKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 ++ + F +D+ L K Q +DV++IDT GR H + +G+M Sbjct: 247 SNILNIPFYAI---TDSKNLK----KTLQNLNGIDVVLIDTVGRSHYD---YWRLGEMRE 296 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 +L S++ + + AL V + L TK+D T + G L+ + + Sbjct: 297 ILGGGADFMDISLVLSCNYKNSE-ALEVVNRYRTFFPIHSLFFTKIDETYKPGILLNLPI 355 Query: 281 THKIPVYFLGVGEGI 295 IP+ F+ VG+ + Sbjct: 356 KTDIPLSFISVGQKV 370 >gi|289666122|ref|ZP_06487703.1| flagellar biosynthesis regulator FlhF [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 561 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 25/192 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADR-----T 165 VI +VG G GKTT I KL+++ + A V L DT R +QL + + Sbjct: 354 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH 413 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 AD S + Y+ +++IDTAG + L A + +R +++ Sbjct: 414 EADSAESLLELLERLRDYK-----------LVLIDTAGMGQRDRALAAQLN-WLRAAQQV 461 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 + L VL A + L +V A A G+++TK+D T R G + +VV H++P Sbjct: 462 ------TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMP 515 Query: 286 VYFLGVGEGIND 297 + ++ G+ + D Sbjct: 516 ITWVTDGQRVPD 527 >gi|84624135|ref|YP_451507.1| flagellar biosynthesis regulator FlhF [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368075|dbj|BAE69233.1| flagellar biosynthetic protein FlhF [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 552 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 15/187 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G GKTT I KL+++ + V L DT R +QL + + Sbjct: 345 VIALVGPTGAGKTTTIAKLAQRFAAQHTPRDVALVTTDTQRVGGREQLHSYGRQLG--VA 402 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 E +D+A + F++ + K+ ++IDTAG + L A + +R +++ Sbjct: 403 VHE--ADSAESLLDLFERLRDYKL--VLIDTAGMGQRDRALAAQLN-WLRAAQQV----- 452 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 + L VL A + L +V A A G+++TK+D T R G + +VV H++P+ ++ Sbjct: 453 -TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVT 511 Query: 291 VGEGIND 297 G+ + D Sbjct: 512 DGQRVPD 518 >gi|323705426|ref|ZP_08117001.1| flagellar biosynthetic protein FlhF [Thermoanaerobacterium xylanolyticum LX-11] gi|323535328|gb|EGB25104.1| flagellar biosynthetic protein FlhF [Thermoanaerobacterium xylanolyticum LX-11] Length = 337 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 15/183 (8%) Query: 117 VGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 +G GVGKTT I K++ + KV+L D FR A +QLKI+ + + Sbjct: 150 IGPTGVGKTTTIAKIASNLILREKKKVLLITADIFRIAGAEQLKIYGEILGVPVMVVNNI 209 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH-SVL 234 D L + + K DV++IDTAGR H +S K ++ LK + + V Sbjct: 210 FDLNRL------EGEISKYDVVLIDTAGRSHTDS-------KKMQELKTFLQYGTYDEVY 256 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 L A T + ++++ + L+ TK+D T ++ + K V ++ G+ Sbjct: 257 LCLSAATKNSDIKKIIKSYDFIDEYNLLFTKLDETDNYSVILNSIYYSKKSVSYVTDGQM 316 Query: 295 IND 297 + D Sbjct: 317 VPD 319 >gi|77457788|ref|YP_347293.1| flagellar biosynthesis regulator FlhF [Pseudomonas fluorescens Pf0-1] gi|77381791|gb|ABA73304.1| putative flagellar biosynthesis protein [Pseudomonas fluorescens Pf0-1] Length = 446 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D+FR A +QLK + Sbjct: 228 VIAMVGPAGMGKTTTLAKLAARYVLKYGAQNIALVSMDSFRIGAQEQLKTLGRILNVSVT 287 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G +A K+V ++IDTAG ++ L + G+ IR L Sbjct: 288 HVDPGQSLV----QALDPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIRSKNYL- 340 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + ++H++PV Sbjct: 341 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 391 Query: 287 YFLGVGEGIND 297 +L G I D Sbjct: 392 AYLTDGPRIPD 402 >gi|107024381|ref|YP_622708.1| flagellar biosynthesis regulator FlhF [Burkholderia cenocepacia AU 1054] gi|116688293|ref|YP_833916.1| flagellar biosynthesis regulator FlhF [Burkholderia cenocepacia HI2424] gi|105894570|gb|ABF77735.1| GTP-binding signal recognition particle SRP54, G-domain protein [Burkholderia cenocepacia AU 1054] gi|116646382|gb|ABK07023.1| GTP-binding signal recognition particle SRP54, G- domain protein [Burkholderia cenocepacia HI2424] Length = 592 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 18/191 (9%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ V Sbjct: 362 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 418 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 DA LA ++ + +++IDT G + + I +L + AP Sbjct: 419 PVHAVKDAGDLA---LALSELRNKHIVLIDTIGMSQRDR----AVSDQIAMLHGAN--AP 469 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHKIPV 286 L +L+AT+ + L +V + AG G I+TK+D GG++ V+ +K+PV Sbjct: 470 VQRLLLLNATSHGDTLNEVVQAYRSAGEHPDLAGCILTKLDEATHLGGVLDTVIRYKLPV 529 Query: 287 YFLGVGEGIND 297 +++ G+ + + Sbjct: 530 HYVSTGQKVPE 540 >gi|283955508|ref|ZP_06373003.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792969|gb|EFC31743.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni 1336] Length = 484 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 14/193 (7%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 + ++++VG GVGKTT + KL+ + + D K + DT+R A++QL +A Sbjct: 281 KQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKL 340 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + S D EA K +V+++DT G N+ + + K L + Sbjct: 341 PIIDSIEPKDLD----EAIKSLN--NCEVILVDTIG---NSQYDQSKLSKTKEFL--MHS 389 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 +A V V+ A T L ++ + LI+TK D T G + ++ IP+ Sbjct: 390 NAEIDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLIYETNIPLS 449 Query: 288 FLGVGEGI-NDLE 299 F G+ + +DLE Sbjct: 450 FFSTGQEVPDDLE 462 >gi|217423827|ref|ZP_03455327.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei 576] gi|226193076|ref|ZP_03788686.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei Pakistan 9] gi|217392890|gb|EEC32912.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei 576] gi|225934676|gb|EEH30653.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei Pakistan 9] Length = 583 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 23/196 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 348 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 407 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + G D A+ + +++IDT G + + I +L D P Sbjct: 408 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 455 Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPIVVT 281 L +L+AT+ + L +V + + + AG G I+TK+D + GG++ V+ Sbjct: 456 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIR 515 Query: 282 HKIPVYFLGVGEGIND 297 +K+PV+++ G+ + + Sbjct: 516 YKLPVHYVSTGQKVPE 531 >gi|190574222|ref|YP_001972067.1| flagellar biosynthesis regulator FlhF [Stenotrophomonas maltophilia K279a] gi|190012144|emb|CAQ45767.1| putative flagellar biosynthesis protein FlhF [Stenotrophomonas maltophilia K279a] Length = 540 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 15/187 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G GKTT I KL+ + ++ A V L DT R A +QL + + Sbjct: 333 VIALVGPTGAGKTTTIAKLASRFAEKHAPRDVALVTTDTTRIGAREQLYGYGRQLGIAVH 392 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + G+D L + K +++IDTAG + L A + + +R +++ Sbjct: 393 EANSGTDLDQLLE------RLKDYKLVLIDTAGLGPRDRALAAQL-QWLRAARQV----- 440 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 L VL A T + +V A GL+++K+D T R G + + V H +P+ ++ Sbjct: 441 -RTLLVLPANTSFGDMDEVVRRFGAANLQGLVLSKLDETGRFGNALSVAVDHALPINWVT 499 Query: 291 VGEGIND 297 G+ + + Sbjct: 500 DGQDVPE 506 >gi|53720903|ref|YP_109889.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei K96243] gi|76810293|ref|YP_331478.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei 1710b] gi|254186352|ref|ZP_04892869.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei Pasteur 52237] gi|254259130|ref|ZP_04950184.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei 1710a] gi|254298804|ref|ZP_04966255.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei 406e] gi|52211317|emb|CAH37306.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei K96243] gi|76579746|gb|ABA49221.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei 1710b] gi|157808601|gb|EDO85771.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei 406e] gi|157934037|gb|EDO89707.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei Pasteur 52237] gi|254217819|gb|EET07203.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei 1710a] Length = 583 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 23/196 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 348 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 407 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + G D A+ + +++IDT G + + I +L D P Sbjct: 408 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 455 Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPIVVT 281 L +L+AT+ + L +V + + + AG G I+TK+D + GG++ V+ Sbjct: 456 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIR 515 Query: 282 HKIPVYFLGVGEGIND 297 +K+PV+++ G+ + + Sbjct: 516 YKLPVHYVSTGQKVPE 531 >gi|78064849|ref|YP_367618.1| flagellar biosynthesis regulator FlhF [Burkholderia sp. 383] gi|77965594|gb|ABB06974.1| GTP-binding signal recognition particle SRP54, G-domain protein [Burkholderia sp. 383] Length = 587 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 18/191 (9%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ V Sbjct: 357 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 413 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 DA LA ++ + +++IDT G + + I +L +AP Sbjct: 414 PVHAVKDAGDLA---LALSELRNKHIVLIDTIGMSQRDR----AVSDQIAMLH--GANAP 464 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHKIPV 286 L +L+AT+ + L +V + AG G I+TK+D GG++ V+ +K+P+ Sbjct: 465 VQRLLLLNATSHGDTLNEVVQAYRSAGEHPDLAGCILTKLDEATHLGGVLDTVIRYKLPI 524 Query: 287 YFLGVGEGIND 297 +++ G+ + + Sbjct: 525 HYVSTGQKVPE 535 >gi|126454275|ref|YP_001068143.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei 1106a] gi|242314712|ref|ZP_04813728.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei 1106b] gi|126227917|gb|ABN91457.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei 1106a] gi|242137951|gb|EES24353.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei 1106b] Length = 583 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 23/196 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 348 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 407 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + G D A+ + +++IDT G + + I +L D P Sbjct: 408 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 455 Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPIVVT 281 L +L+AT+ + L +V + + + AG G I+TK+D + GG++ V+ Sbjct: 456 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIR 515 Query: 282 HKIPVYFLGVGEGIND 297 +K+PV+++ G+ + + Sbjct: 516 YKLPVHYVSTGQKVPE 531 >gi|154175094|ref|YP_001408773.1| flagellar biosynthesis regulator FlhF [Campylobacter curvus 525.92] gi|112802244|gb|EAT99588.1| ATP-dependent DNA helicase RecG [Campylobacter curvus 525.92] Length = 458 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/247 (24%), Positives = 101/247 (40%), Gaps = 35/247 (14%) Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 A+ Q ++ L + +V+R Y L+ ML P K + + ++++VG Sbjct: 208 AIMQATIQNLPASMKSNPTAVKRYFY---SLLRNML-PCRKERS---DKKQRIMMLVGPT 260 Query: 121 GVGKTTVIGKLSKKM---SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 GVGKTT + KL+ + ++ K + DT+R A++QL +A + Sbjct: 261 GVGKTTTLAKLAARFAYGNEKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPIL------- 313 Query: 178 AAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 + E FK A DV++IDT G + L +LD HS Q Sbjct: 314 -DVIEVEEFKDAIKTLSHCDVILIDTTGNSQYDK----------EKLDKLDKFLKHSGAQ 362 Query: 236 -----VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 VL A + L ++ + LI+TK D T G + ++ PV + Sbjct: 363 IDVNLVLSAGSKVEDLMEIYNGFSFLDIDTLIITKFDETRIFGNVFSLIYETNTPVSYFC 422 Query: 291 VGEGIND 297 VG+ + D Sbjct: 423 VGQEVPD 429 >gi|254194651|ref|ZP_04901082.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei S13] gi|169651401|gb|EDS84094.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei S13] Length = 583 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 23/196 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 348 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 407 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + G D A+ + +++IDT G + + I +L D P Sbjct: 408 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 455 Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPIVVT 281 L +L+AT+ + L +V + + + AG G I+TK+D + GG++ V+ Sbjct: 456 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIR 515 Query: 282 HKIPVYFLGVGEGIND 297 +K+PV+++ G+ + + Sbjct: 516 YKLPVHYVSTGQKVPE 531 >gi|254183874|ref|ZP_04890465.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei 1655] gi|184214406|gb|EDU11449.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei 1655] Length = 583 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 23/196 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 348 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 407 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + G D A+ + +++IDT G + + I +L D P Sbjct: 408 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 455 Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPIVVT 281 L +L+AT+ + L +V + + + AG G I+TK+D + GG++ V+ Sbjct: 456 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIR 515 Query: 282 HKIPVYFLGVGEGIND 297 +K+PV+++ G+ + + Sbjct: 516 YKLPVHYVSTGQKVPE 531 >gi|170722832|ref|YP_001750520.1| flagellar biosynthesis regulator FlhF [Pseudomonas putida W619] gi|169760835|gb|ACA74151.1| GTP-binding signal recognition particle SRP54 G- domain [Pseudomonas putida W619] Length = 435 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 30/195 (15%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D+FR A +QLK + Sbjct: 218 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNLALVSMDSFRIGAQEQLKTLGRILNVPVT 277 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG--------RLHNNSILMAGIGKMIRVL 222 + G A +A + K+V ++IDTAG R+ S+ GI Sbjct: 278 YVDPGQSLA----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLASRGI------- 324 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 A + L VL T+ + L + G G I+TK+D TA G ++ + ++H Sbjct: 325 ------ASKNYL-VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISH 377 Query: 283 KIPVYFLGVGEGIND 297 ++PV +L G I D Sbjct: 378 ELPVAYLTDGPRIPD 392 >gi|126440832|ref|YP_001060836.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei 668] gi|126220325|gb|ABN83831.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei 668] Length = 583 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 23/196 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 348 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 407 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + G D A+ + +++IDT G + + I +L D P Sbjct: 408 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 455 Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPIVVT 281 L +L+AT+ + L +V + + + AG G I+TK+D + GG++ V+ Sbjct: 456 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIR 515 Query: 282 HKIPVYFLGVGEGIND 297 +K+PV+++ G+ + + Sbjct: 516 YKLPVHYVSTGQKVPE 531 >gi|237814233|ref|YP_002898684.1| flagellar biosynthetic protein FlhF [Burkholderia pseudomallei MSHR346] gi|237506716|gb|ACQ99034.1| flagellar biosynthetic protein FlhF [Burkholderia pseudomallei MSHR346] Length = 583 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 23/196 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 348 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 407 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + G D A+ + +++IDT G + + I +L D P Sbjct: 408 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 455 Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPIVVT 281 L +L+AT+ + L +V + + + AG G I+TK+D + GG++ V+ Sbjct: 456 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIR 515 Query: 282 HKIPVYFLGVGEGIND 297 +K+PV+++ G+ + + Sbjct: 516 YKLPVHYVSTGQKVPE 531 >gi|83720875|ref|YP_443662.1| flagellar biosynthesis regulator FlhF [Burkholderia thailandensis E264] gi|167620813|ref|ZP_02389444.1| flagellar biosynthesis regulator FlhF [Burkholderia thailandensis Bt4] gi|83654700|gb|ABC38763.1| flagellar biosynthetic protein FlhF, putative [Burkholderia thailandensis E264] Length = 577 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 23/196 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 342 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 401 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + G D A+ + +++IDT G + + I +L D P Sbjct: 402 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 449 Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPIVVT 281 L +L+AT+ + L +V + + + AG G I+TK+D + GG++ V+ Sbjct: 450 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPRSALPDLAGCILTKLDEASNLGGVLDTVIR 509 Query: 282 HKIPVYFLGVGEGIND 297 +K+PV+++ G+ + + Sbjct: 510 YKLPVHYVSTGQKVPE 525 >gi|134281453|ref|ZP_01768161.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei 305] gi|134247120|gb|EBA47206.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei 305] Length = 583 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 23/196 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 348 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 407 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + G D A+ + +++IDT G + + I +L D P Sbjct: 408 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 455 Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPIVVT 281 L +L+AT+ + L +V + + + AG G I+TK+D + GG++ V+ Sbjct: 456 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIR 515 Query: 282 HKIPVYFLGVGEGIND 297 +K+PV+++ G+ + + Sbjct: 516 YKLPVHYVSTGQKVPE 531 >gi|86151220|ref|ZP_01069435.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp. jejuni 260.94] gi|157414378|ref|YP_001481634.1| flagellar biosynthesis regulator FlhF [Campylobacter jejuni subsp. jejuni 81116] gi|315123669|ref|YP_004065673.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841567|gb|EAQ58814.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp. jejuni 260.94] gi|157385342|gb|ABV51657.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni 81116] gi|307747024|gb|ADN90294.1| Flagellar biosynthesis protein flhF [Campylobacter jejuni subsp. jejuni M1] gi|315017391|gb|ADT65484.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 484 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 14/193 (7%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 + ++++VG GVGKTT + KL+ + + D K + DT+R A++QL +A Sbjct: 281 KQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKL 340 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + S D EA K +V+++DT G N+ + + K L + Sbjct: 341 PIIDSIEPKDLD----EAIKSLN--NCEVILVDTIG---NSQYDQSKLAKTKEFL--MHS 389 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 +A V V+ A T L ++ + LI+TK D T G + ++ IP+ Sbjct: 390 NAEIDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLIYETNIPLS 449 Query: 288 FLGVGEGI-NDLE 299 F G+ + +DLE Sbjct: 450 FFSTGQEVPDDLE 462 >gi|78047535|ref|YP_363710.1| flagellar biosynthesis regulator FlhF [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035965|emb|CAJ23656.1| flagellar GTP-binding protein FlhF [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 566 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 15/187 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G GKTT I KL+++ + A V L DT R +QL + + Sbjct: 359 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLG--IA 416 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 E +D+A + ++ + K+ ++IDTAG + L A + +R +++ Sbjct: 417 VHE--ADSAESLLDLLERLRDYKL--VLIDTAGMGQRDRALAAQLN-WLRAAQQV----- 466 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 + L VL A + L +V A A G+++TK+D T R G + +VV H++P+ ++ Sbjct: 467 -TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVT 525 Query: 291 VGEGIND 297 G+ + D Sbjct: 526 DGQRVPD 532 >gi|21242679|ref|NP_642261.1| flagellar biosynthesis regulator FlhF [Xanthomonas axonopodis pv. citri str. 306] gi|21108150|gb|AAM36797.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] Length = 566 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 15/187 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G GKTT I KL+++ + A V L DT R +QL + + Sbjct: 359 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLG--IA 416 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 E +D+A + ++ + K+ ++IDTAG + L A + +R +++ Sbjct: 417 VHE--ADSAESLLDLLERLRDYKL--VLIDTAGMGQRDRALAAQLN-WLRAAQQV----- 466 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 + L VL A + L +V A A G+++TK+D T R G + +VV H++P+ ++ Sbjct: 467 -TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVT 525 Query: 291 VGEGIND 297 G+ + D Sbjct: 526 DGQRVPD 532 >gi|167920928|ref|ZP_02508019.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei BCC215] Length = 583 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 23/196 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 348 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 407 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + G D A+ + +++IDT G + + I +L D P Sbjct: 408 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 455 Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGTT--------GLIMTKMDGTARGGGLIPIVVT 281 L +L+AT+ + L +V + + + AG G I+TK+D + GG++ V+ Sbjct: 456 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIR 515 Query: 282 HKIPVYFLGVGEGIND 297 +K+PV+++ G+ + + Sbjct: 516 YKLPVHYVSTGQKVPE 531 >gi|257484898|ref|ZP_05638939.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289629015|ref|ZP_06461969.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647086|ref|ZP_06478429.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. aesculi str. 2250] gi|298487815|ref|ZP_07005856.1| Flagellar biosynthesis protein flhF [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157907|gb|EFH98986.1| Flagellar biosynthesis protein flhF [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325132|gb|EFW81201.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. glycinea str. B076] gi|320329391|gb|EFW85384.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. glycinea str. race 4] gi|330866463|gb|EGH01172.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330986507|gb|EGH84610.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011082|gb|EGH91138.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 442 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D+FR A +QLK + Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G +A + K+V ++IDTAG ++ L + G+ I+ L Sbjct: 284 HVDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 336 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + ++H++PV Sbjct: 337 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 387 Query: 287 YFLGVGEGIND 297 +L G I D Sbjct: 388 AYLTDGPRIPD 398 >gi|330889041|gb|EGH21702.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. mori str. 301020] Length = 442 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D+FR A +QLK + Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G +A + K+V ++IDTAG ++ L + G+ I+ L Sbjct: 284 HVDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 336 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + ++H++PV Sbjct: 337 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 387 Query: 287 YFLGVGEGIND 297 +L G I D Sbjct: 388 AYLTDGPRIPD 398 >gi|71736999|ref|YP_275523.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557552|gb|AAZ36763.1| flagellar biosynthesis protein FlhF [Pseudomonas syringae pv. phaseolicola 1448A] Length = 442 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D+FR A +QLK + Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G +A + K+V ++IDTAG ++ L + G+ I+ L Sbjct: 284 HVDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 336 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + ++H++PV Sbjct: 337 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 387 Query: 287 YFLGVGEGIND 297 +L G I D Sbjct: 388 AYLTDGPRIPD 398 >gi|302185380|ref|ZP_07262053.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. syringae 642] Length = 442 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D+FR A +QLK + Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G +A + K+V ++IDTAG ++ L + G+ I+ L Sbjct: 284 HVDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 336 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + ++H++PV Sbjct: 337 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 387 Query: 287 YFLGVGEGIND 297 +L G I D Sbjct: 388 AYLTDGPRIPD 398 >gi|238593005|ref|XP_002393074.1| hypothetical protein MPER_07266 [Moniliophthora perniciosa FA553] gi|215460003|gb|EEB94004.1| hypothetical protein MPER_07266 [Moniliophthora perniciosa FA553] Length = 324 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 37/50 (74%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 P+ I VGVNGVGK+T + K+ + GL+V++AA DTFRS A++QL++ Sbjct: 221 PYSITFVGVNGVGKSTNLSKVCFWLIQNGLRVLIAACDTFRSGAVEQLRV 270 >gi|226313049|ref|YP_002772943.1| flagellar biosynthesis protein FlhF [Brevibacillus brevis NBRC 100599] gi|226095997|dbj|BAH44439.1| probable flagellar biosynthesis protein FlhF [Brevibacillus brevis NBRC 100599] Length = 448 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 23/186 (12%) Query: 118 GVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD----FVCS 172 G GVGKTT I KL+ M K+ DT+R AA++QLK +A+ + F Sbjct: 263 GPTGVGKTTTIAKLAANSMLKEKRKIGFITADTYRMAAVEQLKTYANILNVPLEVVFSPR 322 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 E+ + L+ D++ +DTAGR N + GI +++ H S Sbjct: 323 EMAAAMERLS----------DCDLIFVDTAGRNFRNDEYVEGIRELLE-------HGKDS 365 Query: 233 V-LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 V VL ++ N ++ + A +I TK D T G ++ + + + ++ Sbjct: 366 VNYLVLSLSSKFNDMKAIVQNFAEVQVKQVIFTKADETNSFGTMLNVCQEMNLQLSYVTT 425 Query: 292 GEGIND 297 G+ + D Sbjct: 426 GQNVPD 431 >gi|57241946|ref|ZP_00369886.1| flagellar biosynthesis protein FlhF, putative [Campylobacter upsaliensis RM3195] gi|57017138|gb|EAL53919.1| flagellar biosynthesis protein FlhF, putative [Campylobacter upsaliensis RM3195] Length = 453 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 13/187 (6%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 ++++VG GVGKTT + KL+ + + D K + DT+R A++QL +A + Sbjct: 254 IMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPII 313 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 S D EA K + +V+++DT G + +A + + + +A Sbjct: 314 DSIEPKDLD----EAIKSLSS--CEVILVDTIGNSQYDQTKLAKTKEFL-----MHSNAE 362 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 V V+ A T L ++ + LI+TK D T G + ++ +P+ F Sbjct: 363 IDVNLVISANTKYEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLIYEINVPLSFFS 422 Query: 291 VGEGIND 297 +G+ + D Sbjct: 423 MGQEVPD 429 >gi|134294345|ref|YP_001118080.1| flagellar biosynthesis regulator FlhF [Burkholderia vietnamiensis G4] gi|134137502|gb|ABO53245.1| GTP-binding signal recognition particle SRP54, G- domain protein [Burkholderia vietnamiensis G4] Length = 596 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 23/196 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ V Sbjct: 361 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 417 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 DA LA ++ + +++IDT G + L I + +AP Sbjct: 418 PVHAVKDAGDLA---LALSELRNKHIVLIDTIGMSQRDRALSDQIAMLHGA------NAP 468 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT---------TGLIMTKMDGTARGGGLIPIVVT 281 L +L+AT+ + L +V + AG G I+TK+D GG++ V+ Sbjct: 469 VQRLLLLNATSHGDTLNEVVQAYRSAGEHPHGPTPDLAGCILTKLDEATHLGGVLDTVIR 528 Query: 282 HKIPVYFLGVGEGIND 297 +K+PV+++ G+ + + Sbjct: 529 YKLPVHYVSTGQKVPE 544 >gi|330976013|gb|EGH76079.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 442 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D+FR A +QLK + Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G +A + K+V ++IDTAG ++ L + G+ I+ L Sbjct: 284 HIDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 336 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + ++H++PV Sbjct: 337 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 387 Query: 287 YFLGVGEGIND 297 +L G I D Sbjct: 388 AYLTDGPRIPD 398 >gi|283955441|ref|ZP_06372939.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni 414] gi|283793068|gb|EFC31839.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni 414] Length = 484 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 14/190 (7%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 ++++VG GVGKTT + KL+ + + D K + DT+R A++QL +A + Sbjct: 284 IMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPII 343 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 S D EA K +V+++DT G N+ + + K L + +A Sbjct: 344 DSIEPKDLD----EAIKSLN--NCEVILVDTIG---NSQYDQSKLAKTKEFL--MHSNAD 392 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 V V+ A T L ++ + LI+TK D T G + ++ IP+ F Sbjct: 393 IDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLIYETNIPLSFFS 452 Query: 291 VGEGI-NDLE 299 G+ + +DLE Sbjct: 453 TGQEVPDDLE 462 >gi|168008842|ref|XP_001757115.1| predicted protein [Physcomitrella patens subsp. patens] gi|162691613|gb|EDQ77974.1| predicted protein [Physcomitrella patens subsp. patens] Length = 281 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%) Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A Q + F +I+TKMDG A+GGG + V K P+ F+G GE +++ E F K Sbjct: 12 AFDQAQAFKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPIIFIGTGEHMDEFEAFETK 71 Query: 305 DFSAVITGCLDY 316 F + + G D+ Sbjct: 72 TFVSRLLGMGDW 83 >gi|297569690|ref|YP_003691034.1| flagellar biosynthetic protein FlhF [Desulfurivibrio alkaliphilus AHT2] gi|296925605|gb|ADH86415.1| flagellar biosynthetic protein FlhF [Desulfurivibrio alkaliphilus AHT2] Length = 391 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 17/200 (8%) Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLK 159 +P + P VI +VG GVGKTT K++ S +V L + D +R A DQL+ Sbjct: 170 RPLQLNGRTEPLVIALVGPTGVGKTTTAAKIAAWFSLHENARVALLSMDCYRIGATDQLR 229 Query: 160 IWAD--RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 +A R + V AA + ++ D++IIDTAG+ + + +G+ Sbjct: 230 TYARIMRLPCEIVLRRQDLQAALHKH--------RQKDLIIIDTAGKSPFDEDHIPELGQ 281 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + P+ VL AT + + + + G I+TK+D T L Sbjct: 282 WFADHGGITPYL------VLSATAKKEDINHIIATYRPLGVPAAILTKLDETRAYAALCQ 335 Query: 278 IVVTHKIPVYFLGVGEGIND 297 + ++P+ L G+ + + Sbjct: 336 QMARAELPIACLCTGQKVPE 355 >gi|166712014|ref|ZP_02243221.1| flagellar biosynthesis regulator FlhF [Xanthomonas oryzae pv. oryzicola BLS256] Length = 557 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 15/187 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G GKTT I KL+++ + A V L DT R +QL + + Sbjct: 350 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLG--IA 407 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 E +D+A + ++ + K+ ++IDTAG + L A + +R +++ Sbjct: 408 VHE--ADSAESLLDLLERLRDYKL--VLIDTAGMGQRDRALAAQLN-WLRAAQQV----- 457 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 + L VL A + L +V A A G+++TK+D T R G + +VV H++P+ ++ Sbjct: 458 -TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVT 516 Query: 291 VGEGIND 297 G+ + D Sbjct: 517 DGQRVPD 523 >gi|330955366|gb|EGH55626.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae Cit 7] Length = 269 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D+FR A +QLK + Sbjct: 51 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 110 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G +A + K+V ++IDTAG ++ L + G+ I+ L Sbjct: 111 HVDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 163 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + ++H++PV Sbjct: 164 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 214 Query: 287 YFLGVGEGIND 297 +L G I D Sbjct: 215 AYLTDGPRIPD 225 >gi|330815161|ref|YP_004358866.1| FlhF [Burkholderia gladioli BSR3] gi|327367554|gb|AEA58910.1| FlhF [Burkholderia gladioli BSR3] Length = 594 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 17/190 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 365 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGRILGVPVH 424 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + G D LA + +++IDT G + + I +L+ D P Sbjct: 425 AVKDGGDLQ-LALSELRNKH-----IVLIDTIGMSQRDRT----VSDQIAMLQGAD--TP 472 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT---TGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 L +L+AT+ + L +V + AG G I+TK+D GG++ V+ +++PV+ Sbjct: 473 VQRLLLLNATSHGDTLNEVVQAYRGAGQPDLAGCILTKLDEATNLGGVLDTVIRYQLPVH 532 Query: 288 FLGVGEGIND 297 ++ G+ + + Sbjct: 533 YVSTGQKVPE 542 >gi|330808233|ref|YP_004352695.1| flagellar biosynthesis regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376341|gb|AEA67691.1| flagellar biosynthesis regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 449 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D+FR A +QLK + Sbjct: 231 VIAMVGPAGMGKTTTLAKLAARYVLKYGAQSIALVSMDSFRIGAQEQLKTLGRILNVSVT 290 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G A +A + K+V ++IDTAG ++ L + G+ I+ L Sbjct: 291 HVDPGQSLA----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSKNYL- 343 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + + H++PV Sbjct: 344 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAIGHELPV 394 Query: 287 YFLGVGEGIND 297 +L G I D Sbjct: 395 AYLTDGPRIPD 405 >gi|187925772|ref|YP_001897414.1| flagellar biosynthesis regulator FlhF [Burkholderia phytofirmans PsJN] gi|187716966|gb|ACD18190.1| GTP-binding signal recognition particle SRP54 G- domain [Burkholderia phytofirmans PsJN] Length = 624 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 18/208 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 394 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVSVH 453 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + G+D LA + +++IDT G + ++ I + + P Sbjct: 454 AVKDGADLQ-LALSELRNKH-----IVLIDTIGMSQRDRLVSDQIAMLCHAGQ------P 501 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHKIPV 286 L +L+AT+ + L +V + A G I+TK+D GG++ V+ +K+PV Sbjct: 502 VQRLLLLNATSHGDTLNEVVQAYQRAPDQQPLAGCILTKLDEATNLGGVLDTVIRYKLPV 561 Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCL 314 +++ G+ + + K F T C+ Sbjct: 562 HYVSTGQKVPENLYVATKKFLIKSTFCI 589 >gi|57168746|ref|ZP_00367877.1| flagellar biosynthetic protein FlhF, putative [Campylobacter coli RM2228] gi|305432512|ref|ZP_07401674.1| flagellar biosynthesis protein FlhF [Campylobacter coli JV20] gi|57019793|gb|EAL56476.1| flagellar biosynthetic protein FlhF, putative [Campylobacter coli RM2228] gi|304444551|gb|EFM37202.1| flagellar biosynthesis protein FlhF [Campylobacter coli JV20] Length = 476 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 13/187 (6%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 ++++VG GVGKTT + KL+ + + D K + DT+R A++QL +A + Sbjct: 276 IMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPII 335 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 S D EA K +V+++DT G + +A + + + +A Sbjct: 336 DSIEPKDLD----EAIKSLN--NCEVILVDTIGNSQYDQNKLAKTKEFL-----MHSNAE 384 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 V V+ A T L ++ + LI+TK D T G + ++ IP+ F Sbjct: 385 IDVSLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLIYETNIPLSFFS 444 Query: 291 VGEGIND 297 G+ + D Sbjct: 445 TGQEVPD 451 >gi|325928016|ref|ZP_08189233.1| flagellar GTP-binding protein [Xanthomonas perforans 91-118] gi|325541612|gb|EGD13137.1| flagellar GTP-binding protein [Xanthomonas perforans 91-118] Length = 335 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 15/187 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G GKTT I KL+++ + A V L DT R +QL + + Sbjct: 128 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLG--IA 185 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 E +D+A + ++ + K+ ++IDTAG + L A + +R +++ Sbjct: 186 VHE--ADSAESLLDLLERLRDYKL--VLIDTAGMGQRDRALAAQL-NWLRAAQQV----- 235 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 + L VL A + L +V A A G+++TK+D T R G + +VV H++P+ ++ Sbjct: 236 -TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVT 294 Query: 291 VGEGIND 297 G+ + D Sbjct: 295 DGQRVPD 301 >gi|262303835|gb|ACY44510.1| signal recognition particle [Orchesella imitari] Length = 101 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 36/55 (65%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + PV F+G GE I+DLEPF K F + + G D Sbjct: 12 VIITKLDGHAKGGGALSAVAATESPVIFIGTGEHIDDLEPFKTKPFISKLLGMGD 66 >gi|262303811|gb|ACY44498.1| signal recognition particle [Ischnura verticalis] gi|262303819|gb|ACY44502.1| signal recognition particle [Plathemis lydia] Length = 101 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 36/55 (65%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + P+ F+G GE I+DLEPF K F + + G D Sbjct: 12 VIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 66 >gi|330972454|gb|EGH72520.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. aceris str. M302273PT] Length = 442 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D+FR A +QLK + Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G +A + K+V ++IDTAG ++ L + G+ I+ L Sbjct: 284 HIDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 336 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + ++H++PV Sbjct: 337 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 387 Query: 287 YFLGVGEGIND 297 +L G I D Sbjct: 388 AYLTDGPRIPD 398 >gi|330876036|gb|EGH10185.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 442 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D+FR A +QLK + Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G +A + K+V ++IDTAG ++ L + G+ I+ L Sbjct: 284 HVDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 336 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + ++H++PV Sbjct: 337 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 387 Query: 287 YFLGVGEGIND 297 +L G I D Sbjct: 388 AYLTDGPRIPD 398 >gi|330964677|gb|EGH64937.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. actinidiae str. M302091] Length = 442 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D+FR A +QLK + Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G +A + K+V ++IDTAG ++ L + G+ I+ L Sbjct: 284 HVDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 336 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + ++H++PV Sbjct: 337 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 387 Query: 287 YFLGVGEGIND 297 +L G I D Sbjct: 388 AYLTDGPRIPD 398 >gi|325922771|ref|ZP_08184504.1| flagellar GTP-binding protein [Xanthomonas gardneri ATCC 19865] gi|325546746|gb|EGD17867.1| flagellar GTP-binding protein [Xanthomonas gardneri ATCC 19865] Length = 360 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 29/201 (14%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R VI +VG G GKTT I KL+++ + A V L DT R +QL + Sbjct: 146 DPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGR 205 Query: 164 RT-----SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 + AD S + Y+ +++IDTAG + L A + + Sbjct: 206 QLGIAVHEADSAESLLELLERLRDYK-----------LVLIDTAGMGQRDRALAAQLNWL 254 Query: 219 IRVLKRLDPHAPHSV--LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 A H V L VL A + L +V A A G+++TK+D T R G + Sbjct: 255 ---------RAAHQVTSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSAL 305 Query: 277 PIVVTHKIPVYFLGVGEGIND 297 +VV H++P+ ++ G+ + D Sbjct: 306 SVVVDHQMPITWVTDGQRVPD 326 >gi|66046668|ref|YP_236509.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. syringae B728a] gi|63257375|gb|AAY38471.1| GTP-binding signal recognition particle SRP54, G-domain [Pseudomonas syringae pv. syringae B728a] Length = 442 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D+FR A +QLK + Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G +A + K+V ++IDTAG ++ L + G+ I+ L Sbjct: 284 HIDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 336 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + ++H++PV Sbjct: 337 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 387 Query: 287 YFLGVGEGIND 297 +L G I D Sbjct: 388 AYLTDGPRIPD 398 >gi|28869181|ref|NP_791800.1| flagellar biosynthesis protein FlhF [Pseudomonas syringae pv. tomato str. DC3000] gi|213967542|ref|ZP_03395690.1| flagellar biosynthesis protein FlhF [Pseudomonas syringae pv. tomato T1] gi|301382879|ref|ZP_07231297.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. tomato Max13] gi|302062795|ref|ZP_07254336.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. tomato K40] gi|302131295|ref|ZP_07257285.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852421|gb|AAO55495.1| flagellar biosynthesis protein FlhF [Pseudomonas syringae pv. tomato str. DC3000] gi|213927843|gb|EEB61390.1| flagellar biosynthesis protein FlhF [Pseudomonas syringae pv. tomato T1] gi|331016987|gb|EGH97043.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 442 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D+FR A +QLK + Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G +A + K+V ++IDTAG ++ L + G+ I+ L Sbjct: 284 HVDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 336 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + ++H++PV Sbjct: 337 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 387 Query: 287 YFLGVGEGIND 297 +L G I D Sbjct: 388 AYLTDGPRIPD 398 >gi|289678964|ref|ZP_06499854.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. syringae FF5] Length = 321 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D+FR A +QLK + Sbjct: 103 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 162 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G +A + K+V ++IDTAG ++ L + G+ I+ L Sbjct: 163 HIDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 215 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + ++H++PV Sbjct: 216 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 266 Query: 287 YFLGVGEGIND 297 +L G I D Sbjct: 267 AYLTDGPRIPD 277 >gi|262303791|gb|ACY44488.1| signal recognition particle [Eumesocampa frigilis] Length = 101 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG ARGGG + V + PV F+G GE I+D EPF K F + + G D Sbjct: 12 VIITKLDGHARGGGALSAVAATQSPVTFIGTGEHIDDFEPFKTKPFISKLLGMGD 66 >gi|269103163|ref|ZP_06155860.1| flagellar biosynthesis protein FlhF [Photobacterium damselae subsp. damselae CIP 102761] gi|268163061|gb|EEZ41557.1| flagellar biosynthesis protein FlhF [Photobacterium damselae subsp. damselae CIP 102761] Length = 528 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 31/196 (15%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V+ ++G GVGKTT I KL+ + M ++ L DTFR A +QL + Sbjct: 310 VVALLGPTGVGKTTTIAKLAARAAMEFGPEQIALVTTDTFRIGAHEQLATYGRIIG---- 365 Query: 171 CS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIGKMIRVL 222 C + DA LA + Q + +++ +++DTAG RL LM G IR L Sbjct: 366 CPVRVAKDAEELA-DILHQLRHRRL--VLLDTAGMGQRDIRLSEQLDTLMQNSGAHIRSL 422 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 V+ AT + +++ +E F + +G ++TK+D + G +I + + Sbjct: 423 L------------VMPATAQRRVMQETIEHFRRIP-LSGCVLTKLDESLSLGEVIAVTIQ 469 Query: 282 HKIPVYFLGVGEGIND 297 + +P+ +L G+ + + Sbjct: 470 NALPIAYLADGQRVPE 485 >gi|294828140|ref|NP_712787.2| flagellar biosynthesis regulator FlhF [Leptospira interrogans serovar Lai str. 56601] gi|293385987|gb|AAN49805.2| flagellar biosynthesis regulator FlhF [Leptospira interrogans serovar Lai str. 56601] Length = 426 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 107/247 (43%), Gaps = 22/247 (8%) Query: 62 VAQKIVEELLTKRYAKDVSVQR-----VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116 ++Q VEE+++K + + + VL E++ + + S F ++ VI Sbjct: 162 MSQSYVEEIISKVEERLSPLDQGRNHAVLERTIEILKERVSVDSDLFRGTGKNQRKVIFF 221 Query: 117 VGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VG G GKTT + KL+ K G V L D +R AAI+QLK +AD F Sbjct: 222 VGPTGSGKTTSVAKLAAKYFLHRGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY----- 276 Query: 176 SDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 + FK+ A+ ++++IDTAG H N + + +M +L L Sbjct: 277 ---PVKDIKKFKETLARDGSELILIDTAGYSHRN---LEQLERMNSLLSCFGEKDSVENL 330 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VL +T+ + V + +++TK+D GG + + T+ + VG+ Sbjct: 331 LVLSSTSSYHHTSTVLKAYESLNYRRILLTKLDEADFLGGFLELADTYSKSFTYYSVGQE 390 Query: 295 INDLEPF 301 + PF Sbjct: 391 V----PF 393 >gi|308513335|ref|NP_954097.2| flagellar biosynthetic protein FlhF [Geobacter sulfurreducens PCA] gi|41152916|gb|AAR36447.2| flagellar biosynthetic protein FlhF, putative [Geobacter sulfurreducens PCA] gi|298507083|gb|ADI85806.1| flagellar biogenesis protein FlhF [Geobacter sulfurreducens KN400] Length = 451 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 14/191 (7%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 P +I +VG GVGKTT I KL+ + G + L D FR A++QLK + + Sbjct: 256 PRIIALVGPTGVGKTTTIAKLAAHYALREGHRAALITIDNFRVGAVEQLKTY-----SRI 310 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + + A A EA + + K ++++IDTAGR H +S + + + ++ H Sbjct: 311 MGVPVEVAATAAELEAAIELHSDK-ELILIDTAGRSHKDSEKIEELKGFLESRFAIEIH- 368 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 L + T + L VE F V + +I TK+D + G ++ + K P+ + Sbjct: 369 ----LCLAATTRDREVLEIVERF-GVLSVSRVIFTKLDESESYGSIVNAHLRTKFPLSYF 423 Query: 290 GVGEGI-NDLE 299 G+ + DLE Sbjct: 424 TTGQRVPEDLE 434 >gi|330445381|ref|ZP_08309033.1| SRP54-type, GTPase domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489572|dbj|GAA03530.1| SRP54-type, GTPase domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 559 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 31/194 (15%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V+ ++G GVGKTT I KL+ + M ++ L DT+R A +QL + Sbjct: 341 VVALLGPTGVGKTTTIAKLAARAAMEYGPEQIALVTTDTYRIGAHEQLATYG----RIMG 396 Query: 171 CS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIGKMIRVL 222 C + DA LA + Q + +++ +++DTAG RL LM G IR Sbjct: 397 CPVRVAKDAEELA-DILHQLRHRRL--VLLDTAGMGQRDIRLSEQLDTLMKNSGAHIR-- 451 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 S L V+ AT+ + L++ +E F + +G ++TK+D + G +I + V Sbjct: 452 ---------SYL-VMPATSQRRVLQETIEHFRRIP-LSGCVLTKLDESLSLGEIICVAVQ 500 Query: 282 HKIPVYFLGVGEGI 295 + +P+ +L G+ + Sbjct: 501 NALPIAYLADGQRV 514 >gi|45657255|ref|YP_001341.1| flagellar biosynthesis regulator FlhF [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600493|gb|AAS69978.1| flagellar GTP-binding protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 428 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 107/247 (43%), Gaps = 22/247 (8%) Query: 62 VAQKIVEELLTKRYAKDVSVQR-----VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116 ++Q VEE+++K + + + VL E++ + + S F ++ VI Sbjct: 164 MSQSYVEEIISKVEERLSPLDQGRNHAVLERTIEILKERVSVDSDLFRGTGKNQRKVIFF 223 Query: 117 VGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VG G GKTT + KL+ K G V L D +R AAI+QLK +AD F Sbjct: 224 VGPTGSGKTTSVAKLAAKYFLHRGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY----- 278 Query: 176 SDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 + FK+ A+ ++++IDTAG H N + + +M +L L Sbjct: 279 ---PVKDIKKFKETLARDGSELILIDTAGYSHRN---LEQLERMNSLLSCFGEKDSVENL 332 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VL +T+ + V + +++TK+D GG + + T+ + VG+ Sbjct: 333 LVLSSTSSYHHTSTVLKAYESLNYRRILLTKLDEADFLGGFLELADTYSKSFTYYSVGQE 392 Query: 295 INDLEPF 301 + PF Sbjct: 393 V----PF 395 >gi|325067024|ref|ZP_08125697.1| signal recognition particle protein [Actinomyces oris K20] Length = 158 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 1/83 (1%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 Q+V+ V+E + ++L ++ +W P +I++ G+ G GKTT+ GKL + + D G + Sbjct: 72 QQVVKIVNEELIEVLGGQTREIHW-ADRGPTIIMLAGLQGAGKTTLAGKLGRWLRDQGKR 130 Query: 142 VMLAAGDTFRSAAIDQLKIWADR 164 V+L A D R A+ QL + A+R Sbjct: 131 VLLVASDLQRPNAVTQLSVVAER 153 >gi|195940204|ref|ZP_03085586.1| signal recognition particle protein [Escherichia coli O157:H7 str. EC4024] Length = 228 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 40/74 (54%) Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQ+A + F+ TG+++TK+DG ARGG + I P+ FLGVGE LEPF Sbjct: 1 GQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPF 60 Query: 302 VAKDFSAVITGCLD 315 ++ I G D Sbjct: 61 HPDRIASRILGMGD 74 >gi|262303769|gb|ACY44477.1| signal recognition particle [Artemia salina] Length = 101 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 36/55 (65%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + K P+ F+G GE I+D EPF A+ F + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVASTKSPIVFIGTGEHIDDFEPFKAEPFIRKLLGLGD 66 >gi|238927444|ref|ZP_04659204.1| flagellar biosynthesis protein FlhF [Selenomonas flueggei ATCC 43531] gi|238884726|gb|EEQ48364.1| flagellar biosynthesis protein FlhF [Selenomonas flueggei ATCC 43531] Length = 453 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 13/191 (6%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 +H V +G GVGKTT + K++ + LK L DT+R +A++QLK +A+ Sbjct: 258 THGARVFAFIGTTGVGKTTTLAKIAAHFVLEQNLKGALITADTYRISAVEQLKKYAEILG 317 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + E+ AA L +A + ++K D +++DTAGR N M + + R++ Sbjct: 318 ---LPVEVVYSAADL-RKAITRHRSK--DFILVDTAGRSQYNEFQMDELKDFLAAHPRME 371 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 H L V T Q+A + +E F A +I TK D T G ++ ++ H +P+ Sbjct: 372 KH-----LVVSATTKEQDAAQIIERF-APCHPDRIIFTKTDETQTVGMVLNLLADHSLPL 425 Query: 287 YFLGVGEGIND 297 FL G+ + D Sbjct: 426 SFLSNGQSVPD 436 >gi|262303797|gb|ACY44491.1| signal recognition particle [Endeis laevis] Length = 101 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V K P+ F+G GE I+D EPF K F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKVKPFVSKLLGMGD 66 >gi|302338098|ref|YP_003803304.1| flagellar biosynthetic protein FlhF [Spirochaeta smaragdinae DSM 11293] gi|301635283|gb|ADK80710.1| flagellar biosynthetic protein FlhF [Spirochaeta smaragdinae DSM 11293] Length = 401 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 22/195 (11%) Query: 111 PHVILVVGVNGVGKTTVIGKLS--KKMSDAGLK---VMLAAGDTFRSAAIDQLKIWADRT 165 P V++++G GVGKTT I K++ + G K V L D +R A Q++ + D Sbjct: 175 PQVMILIGPTGVGKTTTIAKMAAIHSLGTKGEKQKSVRLITIDNYRIGARQQIETYGDIM 234 Query: 166 SADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL- 222 C E + L Y K D++++DT G+ + + +A + +M+ Sbjct: 235 GVPVSCVETYQELQKQVLIY--------KDTDLVLVDTIGKSPKDYVNLAKMREMLSACG 286 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 R + H S A+ ++ L Q E F G + +++TK+D T R G +I + Sbjct: 287 TRAEVHLALSA--TTKASDVKDILAQFEPF----GYSSVVLTKLDETMRIGNIISSLYEK 340 Query: 283 KIPVYFLGVGEGIND 297 + + ++ G+ + + Sbjct: 341 RKTLSYITNGQSVPE 355 >gi|262303761|gb|ACY44473.1| signal recognition particle [Ammothea hilgendorfi] Length = 101 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V K P+ F+G GE I+D EPF K F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKVKPFVSKLLGMGD 66 >gi|330961238|gb|EGH61498.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. maculicola str. ES4326] Length = 442 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D+FR A +QLK + Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G +A + K+V ++IDTAG ++ L + G+ I+ L Sbjct: 284 HIDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 336 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + ++H++PV Sbjct: 337 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 387 Query: 287 YFLGVGEGIND 297 +L G I D Sbjct: 388 AYLTDGPRIPD 398 >gi|262303759|gb|ACY44472.1| signal recognition particle [Achelia echinata] Length = 101 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V K P+ F+G GE I+D EPF K F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKVKPFVSKLLGMGD 66 >gi|229591834|ref|YP_002873953.1| flagellar biosynthesis regulator FlhF [Pseudomonas fluorescens SBW25] gi|229363700|emb|CAY51079.1| putative flagellar biosynthesis protein [Pseudomonas fluorescens SBW25] Length = 438 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D++R A +QLK + Sbjct: 220 VIAMVGPAGMGKTTTLAKLAARYVLKYGAQNIALVSMDSYRIGAQEQLKTLGRILNVSVT 279 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G A A K+V ++IDTAG ++ L + G+ I+ L Sbjct: 280 HVDPGQSLA----NALDPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSKNYL- 332 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + ++H++PV Sbjct: 333 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 383 Query: 287 YFLGVGEGIND 297 +L G I D Sbjct: 384 AYLTDGPRIPD 394 >gi|261855328|ref|YP_003262611.1| flagellar biosynthetic protein FlhF [Halothiobacillus neapolitanus c2] gi|261835797|gb|ACX95564.1| flagellar biosynthetic protein FlhF [Halothiobacillus neapolitanus c2] Length = 485 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 105/229 (45%), Gaps = 15/229 (6%) Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 L K+ A+D + Q +S + + +S P F + +G GVGKTT + K Sbjct: 229 LAKKLAQDAARQEPDRALSAALKSLGENISAPAQSAFMQG-GMFAFIGPTGVGKTTTLAK 287 Query: 131 LSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 ++ + ++ V L D FR A +QL+ +A + + + D LA E Sbjct: 288 IAAQAVLAHGRDSVALITTDRFRIGAQEQLRNYARILN---IPLHVARDEQHLA-ELLPA 343 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 +K++ ++IDTAG + +M + K+ + +RL+ VL VL A +A+ Sbjct: 344 VSSKRL--VLIDTAGMSPRDMHMMDALKKLPVINERLN------VLLVLSAQAQYSAMTD 395 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 V G+I+TK+D T G + ++ ++P+ GVG+ + + Sbjct: 396 AINRFQVLPLAGMILTKLDETILLGSALAALIHGRLPLVCTGVGQRVPE 444 >gi|157813200|gb|ABV81345.1| putative signal recognition particle protein [Podura aquatica] Length = 101 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 36/55 (65%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V PV F+G+GE I+D+EPF K F + + G D Sbjct: 12 VIITKLDGHAKGGGALSAVAATNSPVIFIGIGEHIDDIEPFKTKPFISKLLGMGD 66 >gi|262276380|ref|ZP_06054189.1| flagellar biosynthesis protein FlhF [Grimontia hollisae CIP 101886] gi|262220188|gb|EEY71504.1| flagellar biosynthesis protein FlhF [Grimontia hollisae CIP 101886] Length = 536 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 29/193 (15%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS-DAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI ++G GVGKTT I KL+ + + D G + + L DTFR A +QL + Sbjct: 318 VIALLGPTGVGKTTTIAKLAARAAMDFGPEDIALVTTDTFRIGAHEQLATYGRILGCPVK 377 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIGKMIRVLK 223 ++ + A + Y Q + ++++DTAG RL L+ G IR L Sbjct: 378 VAKDADELADILY------QLRHRRLILLDTAGMGQRDLRLSEQLDTLIQNNGSHIRSLL 431 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 VL AT+ + L++ ++ F + +G ++TK+D + G L+ + + + Sbjct: 432 ------------VLPATSQRRVLQETIDHFRRIP-LSGCVLTKLDESLSLGELLSVTIEN 478 Query: 283 KIPVYFLGVGEGI 295 +PV +L G+ + Sbjct: 479 ALPVTYLADGQRV 491 >gi|94266373|ref|ZP_01290072.1| GTP-binding signal recognition particle SRP54, G-domain [delta proteobacterium MLMS-1] gi|93453025|gb|EAT03513.1| GTP-binding signal recognition particle SRP54, G-domain [delta proteobacterium MLMS-1] Length = 410 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 20/217 (9%) Query: 101 KPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQL 158 +P N D P +I +VG GVGKTT KL+ + KV L + D +R A DQL Sbjct: 187 RPLNLDQRGAGPLIIALVGPTGVGKTTTAAKLAAWFTLHENAKVALLSMDCYRIGATDQL 246 Query: 159 KIWAD--RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 + +A R + + +AA + + D++IIDTAG+ + + + Sbjct: 247 RTYARIMRLPCEIAMKQHDLEAALRKH--------RDRDLIIIDTAGKSPFDENHVPELD 298 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + + P+ VL AT + + ++ + G I+TK+D T L Sbjct: 299 RWFANHAEIMPYL------VLSATAKKEDINRIIATYRPLGIPAAILTKLDETRAYAALC 352 Query: 277 PIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312 + ++P+ L G+ + D P +KDF + G Sbjct: 353 QQMTKAELPIACLCTGQKVPEDFRP-ASKDFLKTLFG 388 >gi|32475305|ref|NP_868299.1| flagellar biosynthesis protein FlhF [Rhodopirellula baltica SH 1] gi|32445846|emb|CAD78577.1| flagellar biosynthesis protein FlhF [Rhodopirellula baltica SH 1] Length = 464 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 109/255 (42%), Gaps = 34/255 (13%) Query: 20 GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSD----IGVAVAQKIVEELLTKRY 75 G+AS L D +S R L GV E + S G+A ++ V+ Sbjct: 164 GYASGELS----PADSLSLRLLQAGVEESTARRWMASASSFAAGIANSESAVQ------- 212 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 S QR + + + + L L P R HV+ +VG GVGKTT + KL+ Sbjct: 213 ----SDQRWMEHLQRAVARELN-LCGPIRTQPGDR-HVVALVGPTGVGKTTTVAKLAAGF 266 Query: 136 S-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 +A +V L DT+R AA+ QLK +A+ E + A A V Sbjct: 267 RIEARRRVGLLTIDTYRIAAVQQLKAYAEIMDLPMQVVE-KPEQMETALSAL-----GDV 320 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D+++IDTAGR + A I ++ L+ P H VL ++G+N +E F Sbjct: 321 DLVLIDTAGRSPRSD---ARIEQLSEFLRAAHPDETHLVLSA--TSSGENIRTTLEGFAP 375 Query: 255 VAGTTGLIMTKMDGT 269 V + +TK+D T Sbjct: 376 VRA-NAVTLTKLDET 389 >gi|327540925|gb|EGF27483.1| flagellar biosynthesis protein FlhF [Rhodopirellula baltica WH47] Length = 463 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 109/255 (42%), Gaps = 34/255 (13%) Query: 20 GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSD----IGVAVAQKIVEELLTKRY 75 G+AS L D +S R L GV E + S G+A ++ V+ Sbjct: 163 GYASGELS----PADSLSLRLLQAGVEESTARRWMASASSFAAGIANSESAVQ------- 211 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 S QR + + + + L L P R HV+ +VG GVGKTT + KL+ Sbjct: 212 ----SDQRWMEHLQRAVARELN-LCGPIRTQPGDR-HVVALVGPTGVGKTTTVAKLAAGF 265 Query: 136 S-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 +A +V L DT+R AA+ QLK +A+ E + A A V Sbjct: 266 RIEARRRVGLLTIDTYRIAAVQQLKAYAEIMDLPMQVVE-KPEQMETALSAL-----GDV 319 Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254 D+++IDTAGR + A I ++ L+ P H VL ++G+N +E F Sbjct: 320 DLVLIDTAGRSPRSD---ARIEQLSEFLRAAHPDETHLVLSA--TSSGENIRTTLEGFAP 374 Query: 255 VAGTTGLIMTKMDGT 269 V + +TK+D T Sbjct: 375 VRA-NAVTLTKLDET 388 >gi|262303775|gb|ACY44480.1| signal recognition particle [Nymphon unguiculatum-charcoti complex sp. SEM-1997] Length = 101 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V K P+ F+G GE I+D EPF K F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKVKPFISKLLGMGD 66 >gi|22596847|gb|AAN03365.1|AF481091_2 FlhF [Pseudomonas fluorescens] Length = 438 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D++R A +QLK + Sbjct: 220 VIAMVGPAGMGKTTTLAKLAARYVLKYGAQNIALVSMDSYRIGAQEQLKTLGRILNVTVT 279 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G A A K+V ++IDTAG ++ L + G+ I+ L Sbjct: 280 HVDPGQSLA----NALDPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSKNYL- 332 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + ++H++PV Sbjct: 333 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 383 Query: 287 YFLGVGEGIND 297 +L G I D Sbjct: 384 AYLTDGPRIPD 394 >gi|92114136|ref|YP_574064.1| GTP-binding signal recognition particle SRP54, G-protein [Chromohalobacter salexigens DSM 3043] gi|91797226|gb|ABE59365.1| GTP-binding signal recognition particle SRP54, G-protein [Chromohalobacter salexigens DSM 3043] Length = 729 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 26/196 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V +VG GVGKTT K + + M G V L D +R A +QL+I+A D Sbjct: 170 VFALVGPTGVGKTTTTAKFAARYVMRFGGDDVALVTTDDYRIGAHEQLRIYARLLGVDVH 229 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDP 227 D L + + K++ +I+DT G + + +A +G R ++RL Sbjct: 230 AVHHEDDLEGL----LTRLEGKRM--VIVDTVGMSQRDQRVAGQIARLGGAARPVRRL-- 281 Query: 228 HAPHSVLQVLDATTGQNALRQV-EMFH-----AVAGTTGLIMTKMDGTARGGGLIPIVVT 281 +L+A + + L +V E + A A G ++TK+D R G ++ +V+ Sbjct: 282 -------LLLNAASHGDTLEEVVETYQRASRDAGAPLYGCLLTKVDEAPRLGAVLDVVMR 334 Query: 282 HKIPVYFLGVGEGIND 297 H++ +Y++ G+ + + Sbjct: 335 HRLRLYYVSHGQRVPE 350 >gi|308048767|ref|YP_003912333.1| flagellar biosynthetic protein FlhF [Ferrimonas balearica DSM 9799] gi|307630957|gb|ADN75259.1| flagellar biosynthetic protein FlhF [Ferrimonas balearica DSM 9799] Length = 486 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 15/188 (7%) Query: 113 VILVVGVNGVGKTTVIGKLSKK-MSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG GVGKTT I KL+ + ++ G+ +V L D +R A +QL + Sbjct: 273 VIALVGPTGVGKTTTIAKLAARFVARYGINQVALVTTDNYRIGAQEQLATFGKIMGCPVR 332 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + + ++ Y Q + +++IDTAG + L+ + ++ R RL P P Sbjct: 333 SAASVEELESVIY------QLRSRRLILIDTAGMGQRDMRLVEQLDQLTRS-TRL-PIKP 384 Query: 231 HSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 + VL AT L++ VE F + G I+TK+D G + +++ +++PV +L Sbjct: 385 YLVL---SATAQYRVLKETVERFRQI-DLAGCILTKLDEAHNIGEALSVLIQNRLPVCYL 440 Query: 290 GVGEGIND 297 G+ + + Sbjct: 441 TDGQRVPE 448 >gi|292493582|ref|YP_003529021.1| GTP-binding signal recognition particle SRP54 G- domain protein [Nitrosococcus halophilus Nc4] gi|291582177|gb|ADE16634.1| GTP-binding signal recognition particle SRP54 G- domain protein [Nitrosococcus halophilus Nc4] Length = 393 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 35/205 (17%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS-DAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 ++ ++G GVGKTT + K++ + + G+ V L D+FR A +QL + V Sbjct: 176 IVALIGPTGVGKTTSVAKIAARFALRRGIHSVALVTTDSFRIGAQEQLHTYGRILG---V 232 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNNSILMAGIGKMIRVLKR 224 ++ D AL E + +++IDTAG L ++AG G IR Sbjct: 233 PVKVAQDRQAL--EEILDGLLDR-QLVLIDTAGMSQRDMHLTKQFAMLAGGGPKIRNYL- 288 Query: 225 LDPHAPHSVLQVLDATTGQNALRQV-EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 VL A T +AL +V + F+ V +G I+TK+D A GG++ V+ H+ Sbjct: 289 -----------VLSAATQSSALDEVVQQFNRVE-LSGCILTKIDEAASLGGIVSTVIRHQ 336 Query: 284 IPVYFLGVGEGINDLEPFVAKDFSA 308 +P+ ++ G+ V +DF A Sbjct: 337 LPLAYISDGQ-------RVPEDFGA 354 >gi|293604996|ref|ZP_06687392.1| GTP-binding signal recognition particle SRP54 [Achromobacter piechaudii ATCC 43553] gi|292816601|gb|EFF75686.1| GTP-binding signal recognition particle SRP54 [Achromobacter piechaudii ATCC 43553] Length = 1117 Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 21/190 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V +VG GVGKTT + KL+ + + +V + D FR A++QL+I+ V Sbjct: 511 VYALVGPTGVGKTTTLAKLAARCVAREGRDQVAMLTTDLFRIGALEQLQIYGRLMG---V 567 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + DAA L + K +++IDT G + L+A M+ + P Sbjct: 568 PAHSVRDAAELRRILAELGNRK---IVLIDTTG-ISQRDRLVAEQAAML-----CNAGKP 618 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAG-----TTGLIMTKMDGTARGGGLIPIVVTHKIP 285 L VL+A + + L +V HA G I+TK+D R G + + H++P Sbjct: 619 VRRLLVLNAASQGDTLDEVA--HAYRNGVGEDVAGCIITKLDEATRLGAALDTAIRHRLP 676 Query: 286 VYFLGVGEGI 295 ++++ VG+ + Sbjct: 677 IHYMSVGQKV 686 >gi|170701721|ref|ZP_02892660.1| GTP-binding signal recognition particle SRP54 G- domain [Burkholderia ambifaria IOP40-10] gi|170133384|gb|EDT01773.1| GTP-binding signal recognition particle SRP54 G- domain [Burkholderia ambifaria IOP40-10] Length = 374 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 18/191 (9%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ V Sbjct: 144 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 200 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 DA L ++ + +++IDT G + L I + +AP Sbjct: 201 PVHAVKDAGDLE---LALSELRNKHIVLIDTIGMSQRDRALSDQIAMLHGA------NAP 251 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHKIPV 286 L +L+AT+ + L +V + A G I+TK+D GG++ V+ +K+PV Sbjct: 252 VQRLLLLNATSHGDTLNEVVQAYRSAAEYPDLAGCILTKLDEATHLGGVLDTVIRYKLPV 311 Query: 287 YFLGVGEGIND 297 +++ G+ + + Sbjct: 312 HYVSTGQKVPE 322 >gi|157813208|gb|ABV81349.1| putative signal recognition particle protein [Tanystylum orbiculare] Length = 101 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V P+ F+G GE I+DLEPF K F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDLEPFKVKPFVSKLLGMGD 66 >gi|262303861|gb|ACY44523.1| signal recognition particle [Tomocerus sp. 'Tom2'] Length = 101 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V P+ F+G GE I+DLEPF K F + + G D Sbjct: 12 VIITKLDGHAKGGGALSAVAATSSPIIFIGTGEHIDDLEPFKTKPFISKLLGMGD 66 >gi|94312632|ref|YP_585841.1| putative flagellar biosynthetic protein FlhF [Cupriavidus metallidurans CH34] gi|93356484|gb|ABF10572.1| putative flagellar biosynthetic protein FlhF [Cupriavidus metallidurans CH34] Length = 825 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 24/195 (12%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V+ ++G GVGKTT KL+ + + ++ L D FR A +QL+I+ D V Sbjct: 194 VLALIGPTGVGKTTTTAKLAARYVLRHGADRLALLTTDRFRIGAHEQLRIYGDILG---V 250 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 DAA L F + K ++IIDT G + L I + V AP Sbjct: 251 PVHAVKDAADLR---FALSAMKDKHLVIIDTVGMSQRDRSLSDQIAMLAGV------QAP 301 Query: 231 HSVLQVLDATTGQNALRQVEMFHA--------VAGTTGLIMTKMDGTARGGGLIPIVVTH 282 + +L+ + L E+ HA G G I++K+D G ++ +V+ H Sbjct: 302 MQRVLLLNGAAHGDTLN--EVVHAYRHDAAGDAGGIDGCIISKLDEATHLGSVLDVVIRH 359 Query: 283 KIPVYFLGVGEGIND 297 ++PV++ G+ + + Sbjct: 360 RLPVFYASTGQRVPE 374 >gi|157813188|gb|ABV81339.1| putative signal recognition particle protein [Lithobius forticatus] Length = 101 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + P+ F+G GE I+D EPF K F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATRSPIIFIGTGEHIDDFEPFKVKPFVSKLMGMGD 66 >gi|6969593|gb|AAF33830.1|AF226282_4 flagellar biosynthetic protein FlhF [Xanthomonas oryzae pv. oryzae] Length = 561 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 15/187 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G GKTT I KL+++ + V L DT R +QL + + Sbjct: 354 VIALVGPTGAGKTTTIAKLAQRFAAQHTPRDVALVTTDTQRVGGREQLHSYGRQLG--IA 411 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 E +D+A + F++ + K+ ++IDTAG + L A + +R +++ Sbjct: 412 VHE--ADSAESLLDLFERLRDYKL--VLIDTAGMGQRDRALAAQLN-WLRAAQQV----- 461 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 + L VL A + L +V A A G+++TK+D T G + +VV H++P+ ++ Sbjct: 462 -TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGSFGSALSVVVDHQMPITWVT 520 Query: 291 VGEGIND 297 G+ + D Sbjct: 521 DGQRVPD 527 >gi|330954980|gb|EGH55240.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae Cit 7] Length = 59 Score = 52.8 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 34/48 (70%) Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A+ F Sbjct: 1 TGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 48 >gi|157813206|gb|ABV81348.1| putative signal recognition particle protein [Triops longicaudatus] Length = 101 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 34/55 (61%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + PV F+G GE I D EPF K F + + G D Sbjct: 12 VIITKLDGHAKGGGALSAVAATRSPVIFIGTGEHIEDFEPFKTKPFVSKLLGLGD 66 >gi|157813204|gb|ABV81347.1| putative signal recognition particle protein [Thulinius stephaniae] Length = 101 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 37/64 (57%) Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F + +I+TK+DG ARGGG + V + PV F+G GE I++ E F AK F + + Sbjct: 3 FKSKVNVASVIITKLDGHARGGGALSAVAATQSPVIFIGTGEHIDEFELFKAKSFVSKLL 62 Query: 312 GCLD 315 G D Sbjct: 63 GMGD 66 >gi|312962256|ref|ZP_07776748.1| flagellar biosynthesis protein FlhF [Pseudomonas fluorescens WH6] gi|311283593|gb|EFQ62182.1| flagellar biosynthesis protein FlhF [Pseudomonas fluorescens WH6] Length = 438 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D++R A +QLK + Sbjct: 220 VIAMVGPAGMGKTTTLAKLAARYVLKYGAHNIALVSMDSYRIGAQEQLKTLGRILNVPVT 279 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G A A K+V ++IDTAG ++ L + G+ I+ L Sbjct: 280 HVDPGQSLA----NALDPLLRKRV--VLIDTAGLQASDPALRLQLESLAGRGIKSKNYL- 332 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + ++H++PV Sbjct: 333 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 383 Query: 287 YFLGVGEGIND 297 +L G I D Sbjct: 384 AYLTDGPRIPD 394 >gi|94264041|ref|ZP_01287841.1| GTP-binding signal recognition particle SRP54, G-domain [delta proteobacterium MLMS-1] gi|93455552|gb|EAT05739.1| GTP-binding signal recognition particle SRP54, G-domain [delta proteobacterium MLMS-1] Length = 410 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 19/206 (9%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWAD--RTSA 167 P +I +VG GVGKTT KL+ + KV L + D +R A DQL+ +A R Sbjct: 198 PLIIALVGPTGVGKTTTAAKLAAWFTLHENAKVALLSMDCYRIGATDQLRTYARIMRLPC 257 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 + + +AA + + D++IIDTAG+ + + + + + P Sbjct: 258 EIAMKQHDLEAALRKH--------RDRDLIIIDTAGKSPFDENHVPELDRWFANHAEIMP 309 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 + VL AT + + ++ + G I+TK+D T L + ++P+ Sbjct: 310 YL------VLSATAKKEDINRIIATYRPLGIPAAILTKLDETRAYAALCQQMTKAELPIA 363 Query: 288 FLGVGEGI-NDLEPFVAKDFSAVITG 312 L G+ + D P +KDF + G Sbjct: 364 CLCTGQKVPEDFRP-ASKDFLKTLFG 388 >gi|262303771|gb|ACY44478.1| signal recognition particle [Semibalanus balanoides] Length = 101 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V P+ F+G GE I+DLEPF K F + + G D Sbjct: 12 VIITKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDLEPFRTKPFISKLLGMGD 66 >gi|157813212|gb|ABV81351.1| putative signal recognition particle protein [Cydia pomonella] Length = 101 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + P+ F+G GE I+DLEPF K F + G D Sbjct: 12 VIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFINKLLGMGD 66 >gi|163856426|ref|YP_001630724.1| flagellar biosynthesis regulator FlhF [Bordetella petrii DSM 12804] gi|163260154|emb|CAP42456.1| flagellar biosynthesis protein FlhF [Bordetella petrii] Length = 778 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 29/196 (14%) Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V +VG GVGKTT + KL+ + + +V + D FR A++QL+I+ V Sbjct: 179 VYALVGPTGVGKTTTLAKLAARCVAREGREQVAMLTTDNFRIGALEQLQIYGRLMG---V 235 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG---RLHN---NSILMAGIGKMIRVLKR 224 + D A L + K V +IDT G R N + L+ G G+ +R L Sbjct: 236 PARSVRDVAELRATLAELGDRKMV---LIDTTGISQRDRNVAAQAALLCGAGRPVRRLL- 291 Query: 225 LDPHAPHSVLQVLDATTGQNALRQV-EMFHAVAG--TTGLIMTKMDGTARGGGLIPIVVT 281 VL+A + + L +V + AG G I+TK+D +R G + V Sbjct: 292 -----------VLNAASQGDTLDEVAHAYRHGAGEDVAGCIITKLDEASRLGPALDTAVR 340 Query: 282 HKIPVYFLGVGEGIND 297 H++PV+++ VG+ + + Sbjct: 341 HRLPVHYVCVGQKVPE 356 >gi|89073428|ref|ZP_01159951.1| flagellar biosynthesis protein [Photobacterium sp. SKA34] gi|89050692|gb|EAR56173.1| flagellar biosynthesis protein [Photobacterium sp. SKA34] Length = 511 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 93/194 (47%), Gaps = 31/194 (15%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V+ ++G GVGKTT I KL+ + M ++ L DT+R A +QL + Sbjct: 293 VVALLGPTGVGKTTTIAKLAARAAMEFGPEQIALVTTDTYRIGAHEQLATYG----RIMG 348 Query: 171 CS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIGKMIRVL 222 C + DA LA + Q + +++ +++DTAG RL LM G IR Sbjct: 349 CPVRVAKDAEELA-DILHQLRHRRL--VLLDTAGMGQRDIRLSEQLDTLMKNSGAHIR-- 403 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 S L V+ AT+ + L++ +E F + +G ++TK+D + G +I + + Sbjct: 404 ---------SYL-VMPATSQRRVLQETIEHFRRIP-LSGCVLTKLDESLSLGEIICVAIQ 452 Query: 282 HKIPVYFLGVGEGI 295 + +P+ +L G+ + Sbjct: 453 NALPIAYLADGQRV 466 >gi|188576805|ref|YP_001913734.1| flagellar biosynthesis regulator FlhF [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576998|ref|YP_001913927.1| flagellar biosynthesis regulator FlhF [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521257|gb|ACD59202.1| flagellar biosynthetic protein FlhF [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521450|gb|ACD59395.1| flagellar biosynthetic protein FlhF [Xanthomonas oryzae pv. oryzae PXO99A] Length = 551 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 15/187 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G GKTT I KL+++ + V L DT R +QL + + Sbjct: 344 VIALVGPTGAGKTTTIAKLAQRFAAQHTPRDVALVTTDTQRVGGREQLHSYGRQLG--IA 401 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 E +D+A + F++ + K+ ++IDTAG + L A + +R +++ Sbjct: 402 VHE--ADSAESLLDLFERLRDYKL--VLIDTAGMGQRDRALAAQLN-WLRAAQQV----- 451 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 + L VL A + L +V A A G+++TK+D T G + +VV H++P+ ++ Sbjct: 452 -TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGSFGSALSVVVDHQMPITWVT 510 Query: 291 VGEGIND 297 G+ + D Sbjct: 511 DGQRVPD 517 >gi|325524166|gb|EGD02312.1| flagellar biosynthesis regulator FlhF [Burkholderia sp. TJI49] Length = 330 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 23/199 (11%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 R V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 92 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG- 150 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V DA LA ++ + +++IDT G + + I +L + Sbjct: 151 --VPVHAVKDAGDLA---LALSELRNKHIVLIDTIGMSQRDR----AVSDQIAMLHGAN- 200 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGT---------TGLIMTKMDGTARGGGLIPI 278 AP L +L+AT+ + L +V + AG G I+TK+D GG + Sbjct: 201 -APVQRLLLLNATSHGDTLNEVVQAYRSAGQHPHAAAPDLAGCILTKLDEATHLGGALDT 259 Query: 279 VVTHKIPVYFLGVGEGIND 297 V+ +K+PV+++ G+ + + Sbjct: 260 VIRYKLPVHYVSTGQKVPE 278 >gi|85712285|ref|ZP_01043336.1| flagellar biosynthesis protein [Idiomarina baltica OS145] gi|85693912|gb|EAQ31859.1| flagellar biosynthesis protein [Idiomarina baltica OS145] Length = 433 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 17/196 (8%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R + +VG GVGKTT I KL+ + + V L DTFR A +QLK++ Sbjct: 213 DILTRGGAVALVGPTGVGKTTTIAKLAARYAQRHGSDSVALITTDTFRIGASEQLKVYGR 272 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 +I +DA LA +A + K+ +++IDTAG + L +G++++ + Sbjct: 273 IIGCPV---KIANDAKELA-DAMLSLRDKR--LILIDTAGMGQRDKRLSEQLGQILQNKR 326 Query: 224 -RLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 R+ P+ VL AT L V+ F + G I TK+D G I + + Sbjct: 327 LRIRPYL------VLSATAQTQVLNDTVKQFKTLP-LAGCIFTKLDECLSLGESISVAIE 379 Query: 282 HKIPVYFLGVGEGIND 297 + V +L G+ + + Sbjct: 380 QGLAVGYLTHGQQVPE 395 >gi|300311343|ref|YP_003775435.1| flagellar biosynthesis GTP-binding protein [Herbaspirillum seropedicae SmR1] gi|300074128|gb|ADJ63527.1| flagellar biosynthesis GTP-binding protein [Herbaspirillum seropedicae SmR1] Length = 494 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 59/260 (22%), Positives = 114/260 (43%), Gaps = 29/260 (11%) Query: 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 RE L+ ++++ + + + L+T+ + Q +++ V ++ + L L+ Sbjct: 203 REPLKGIVLKEMLAAGFSASL-SRLITENLPANSKSQDIMFWVKSVLARNLNTLAN--EN 259 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 + V +VG GVGKTT KL+ + M K+ L D +R +QL+I+ Sbjct: 260 ELLENGGVFAMVGPTGVGKTTTTAKLAARCVMRHGSGKLALITTDGYRIGGYEQLRIYG- 318 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI------LMAGIGK 217 + V S +A E K ++IDTAG + + ++ G G Sbjct: 319 KILGVMVHSVKDETDLRIALEELKGKH-----TVLIDTAGVGQRDQMVAEQDAMLTGAGV 373 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 I+ L L+AT L +V ++ +G G I+TK+D A G ++ Sbjct: 374 DIKRLL------------CLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATIGNVLD 421 Query: 278 IVVTHKIPVYFLGVGEGIND 297 +V+ HK+ ++++ G+ + + Sbjct: 422 VVIRHKLNLHYVANGQRVPE 441 >gi|262303773|gb|ACY44479.1| signal recognition particle [Ctenolepisma lineata] Length = 101 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + P+ F+G GE I+D EPF K F + + G D Sbjct: 12 VIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKTKPFVSKLLGMGD 66 >gi|223041121|ref|ZP_03611376.1| flagellar biosynthetic protein FlhF [Campylobacter rectus RM3267] gi|222877615|gb|EEF12741.1| flagellar biosynthetic protein FlhF [Campylobacter rectus RM3267] Length = 468 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 68/260 (26%), Positives = 111/260 (42%), Gaps = 38/260 (14%) Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 E + + A +V+R S L+ KML S+ N + ++++VG GVGKTT Sbjct: 231 ENMSPQMKANPTAVRRYF---SSLLRKMLPCRSEEDN----RKQKIMMLVGPTGVGKTTT 283 Query: 128 IGKLSKKMSDAG---LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 + KL+ + + K + DT+R A++QL +A + + E Sbjct: 284 LAKLAARFAYGEGRRAKTGIITLDTYRIGAVEQLFQYAKMMKLPIL--------DVIEVE 335 Query: 185 AFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV---LDA 239 FK A Q +V++IDT G + +A RL+ HS Q+ L Sbjct: 336 DFKNALKQLNHCEVILIDTTGSSQYDKEKLA----------RLEMFLKHSDAQIDVNLVL 385 Query: 240 TTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 + G +E+++ + LI+TK D T G + +V PV F +G+ + D Sbjct: 386 SAGSKIDDMLEIYNGFSFLDIDTLIITKFDETKIFGNVFSLVYEINKPVSFFCLGQEVPD 445 Query: 298 LEPFVAKDFSAVITGCLDYG 317 + VAK S + CL G Sbjct: 446 -DIMVAK--SEFLVDCLLQG 462 >gi|262303829|gb|ACY44507.1| signal recognition particle [Machiloides banksi] gi|262303849|gb|ACY44517.1| signal recognition particle [Pedetontus saltator] Length = 101 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + P+ F+G GE I+D EPF K F + + G D Sbjct: 12 VIITKLDGHAKGGGALSAVAATESPIIFIGTGEHIDDFEPFKTKPFVSKLLGMGD 66 >gi|262303853|gb|ACY44519.1| signal recognition particle [Scutigera coleoptrata] Length = 101 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + P+ F+G GE I+D EPF K F + + G D Sbjct: 12 VIITKLDGHAKGGGALSAVAATESPIIFIGTGEHIDDFEPFKVKPFVSKLMGLGD 66 >gi|262303781|gb|ACY44483.1| signal recognition particle [Craterostigmus tasmanianus] Length = 101 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + P+ F+G GE I+D EPF K F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKVKPFVSKLMGMGD 66 >gi|295678069|ref|YP_003606593.1| flagellar biosynthetic protein FlhF [Burkholderia sp. CCGE1002] gi|295437912|gb|ADG17082.1| flagellar biosynthetic protein FlhF [Burkholderia sp. CCGE1002] Length = 662 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 18/212 (8%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 R V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 428 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 487 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 V D+A L ++ + +++IDT G + ++ I + R + Sbjct: 488 ---VSVHAVKDSADLQ---LALSELRNKHIVLIDTIGMSQRDRLVSDQIAMLSRAGQ--- 538 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTH 282 P L +L+AT+ + L +V + A G I+TK+D GG++ V+ + Sbjct: 539 ---PVQRLLLLNATSHGDTLNEVVQAYQRAPDQQPLAGCILTKLDEATNLGGVLDTVIRY 595 Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 K+PV+++ G+ + + K F T C+ Sbjct: 596 KLPVHYVSTGQKVPENLYVATKKFLIKSTFCI 627 >gi|222823274|ref|YP_002574847.1| flagellar biosynthesis (GTP-binding) protein FlhF [Campylobacter lari RM2100] gi|222538495|gb|ACM63596.1| flagellar biosynthesis (GTP-binding) protein FlhF [Campylobacter lari RM2100] Length = 461 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 22/240 (9%) Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 A+ + +E + + A +VQR Y L+ ML P + + ++++VG Sbjct: 217 AIMKATIENMPSTMKANQEAVQRYFY---SLLRNML-----PCRIESEIKKQKIMMLVGP 268 Query: 120 NGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 GVGKTT + KL+ + + D K + DT+R A++QL +A + S +D Sbjct: 269 TGVGKTTTLAKLAFRYAYGDRRYKTGIITLDTYRIGAVEQLFQYAKMMKLPIIDSIEPTD 328 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 +A + +V+++DT G N+ A + K L +A V VL Sbjct: 329 LD----DAIRSLNT--CEVILVDTTG---NSQYDKAKLEKTKEFLSH--SNAQIDVNLVL 377 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 A T L + + LI+TK D T G + ++ P+ F +G+ + D Sbjct: 378 SANTKYEDLLETYNNFSFLNIDTLIITKFDETKVFGNVFSLLYETSTPMSFFSIGQEVPD 437 >gi|262303787|gb|ACY44486.1| signal recognition particle [Derocheilocaris typicus] Length = 101 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 36/57 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317 +I+TK+DG A+GGG + V + P+ F+G GE I+D EPF + F + + G D G Sbjct: 12 VIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKVRPFVSKLLGMGDIG 68 >gi|262303837|gb|ACY44511.1| signal recognition particle [Periplaneta americana] Length = 101 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + P+ F+G GE I+D EPF K F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKTKPFVSKLLGMGD 66 >gi|319787085|ref|YP_004146560.1| flagellar biosynthetic protein FlhF [Pseudoxanthomonas suwonensis 11-1] gi|317465597|gb|ADV27329.1| flagellar biosynthetic protein FlhF [Pseudoxanthomonas suwonensis 11-1] Length = 459 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 92/187 (49%), Gaps = 15/187 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKK-MSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G GKTT I KL+ + +++ G + + L DT R +QL + + Sbjct: 252 VIALVGPTGAGKTTTIAKLAARFVAEHGPRDIALVTTDTHRIGGREQLYGYGRQLG--IA 309 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 E SDAA ++ ++ Q ++ +++DTAG + L + + +R + + Sbjct: 310 VHEADSDAALVSL--LQRLQDYRL--VLVDTAGLGQRDRALASQL-NWLRAARNV----- 359 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 S L VL A L +V A G+++TK+D T R G + +VV H++P+ ++ Sbjct: 360 -STLLVLPANQHYADLDEVVRRFESARPQGVVLTKVDETGRLGSALSVVVDHQLPLTWMT 418 Query: 291 VGEGIND 297 G+ + + Sbjct: 419 DGQRVPE 425 >gi|157813186|gb|ABV81338.1| putative signal recognition particle protein [Forficula auricularia] gi|262303833|gb|ACY44509.1| signal recognition particle [Nicoletia meinerti] Length = 101 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + P+ F+G GE I+D EPF K F + + G D Sbjct: 12 VIITKLDGHAKGGGALSAVAATESPIIFIGTGEHIDDFEPFKTKPFVSKLLGMGD 66 >gi|241650810|ref|XP_002410250.1| signal recognition particle receptor, alpha subunit, putative [Ixodes scapularis] gi|215501564|gb|EEC11058.1| signal recognition particle receptor, alpha subunit, putative [Ixodes scapularis] Length = 145 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 17/127 (13%) Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ K+DV++IDTAGR+ +N LM + K+I V ++P VL V +A G A+ Q Sbjct: 17 ARETKIDVVLIDTAGRMQDNEPLMRALAKLITV------NSPDLVLFVGEALVGNEAVDQ 70 Query: 249 VEMFH-AVAGTT---------GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGIND 297 + F+ A+A + G+++TK D + G I + P+ F+G G+ D Sbjct: 71 LVKFNQALADHSSQENPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYID 130 Query: 298 LEPFVAK 304 L+ AK Sbjct: 131 LKTINAK 137 >gi|262303757|gb|ACY44471.1| signal recognition particle [Acheta domesticus] Length = 101 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + P+ F+G GE I+D EPF K F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATESPIIFIGTGEHIDDFEPFKTKPFVSKLLGMGD 66 >gi|149908442|ref|ZP_01897105.1| flagellar biosynthesis protein [Moritella sp. PE36] gi|149808605|gb|EDM68540.1| flagellar biosynthesis protein [Moritella sp. PE36] Length = 488 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 96/189 (50%), Gaps = 23/189 (12%) Query: 114 ILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 + +VG GVGKTT I KL+ K M V L DT+R A +QL + C Sbjct: 280 VALVGPTGVGKTTTIAKLAAKFAMLHGSDNVALITTDTYRIGAHEQLATYGRIMG----C 335 Query: 172 S-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI---RVLKRLDP 227 + ++ D A LA + Q ++K+ +++IDTAG ++ L + ++ +V+ R Sbjct: 336 TVKVARDDAELAQYLY-QLRSKR--LVLIDTAGMGQRDTRLSEQLDSLVNNDKVVIR--- 389 Query: 228 HAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 V+ AT + +++ +E FH + G I++K+D + G ++ +++ H++P+ Sbjct: 390 -----NYLVVPATAQRRVVQETLEHFHHIP-LAGCILSKVDESLSLGEVLSVLIQHQLPI 443 Query: 287 YFLGVGEGI 295 ++ G+ + Sbjct: 444 AYITNGQRV 452 >gi|90579942|ref|ZP_01235750.1| flagellar biosynthesis protein [Vibrio angustum S14] gi|90438827|gb|EAS64010.1| flagellar biosynthesis protein [Vibrio angustum S14] Length = 558 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 93/194 (47%), Gaps = 31/194 (15%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V+ ++G GVGKTT I KL+ + M ++ L DT+R A +QL + Sbjct: 340 VVALLGPTGVGKTTTIAKLAARAAMEFGPDQIALVTTDTYRIGAHEQLATYG----RIMG 395 Query: 171 CS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIGKMIRVL 222 C + DA LA + Q + +++ +++DTAG RL LM G IR Sbjct: 396 CPVRVAKDAEELA-DILHQLRHRRL--VLLDTAGMGQRDIRLSEQLDTLMKNSGAHIR-- 450 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 S L V+ AT+ + L++ +E F + +G ++TK+D + G +I + + Sbjct: 451 ---------SYL-VMPATSQRRVLQETIEHFRRIP-LSGCVLTKLDESLSLGEIICVAIQ 499 Query: 282 HKIPVYFLGVGEGI 295 + +P+ +L G+ + Sbjct: 500 NALPIAYLADGQRV 513 >gi|262303825|gb|ACY44505.1| signal recognition particle [Lynceus sp. 'Lyn'] Length = 101 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + P+ F+G GE I+D EPF K F + + G D Sbjct: 12 VIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFRTKPFISKLLGLGD 66 >gi|237799253|ref|ZP_04587714.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022108|gb|EGI02165.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. oryzae str. 1_6] Length = 443 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D+FR A +QLK + Sbjct: 225 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 284 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G +A + K+V ++IDTAG ++ L + G+ I+ L Sbjct: 285 HVDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 337 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + ++H++PV Sbjct: 338 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 388 Query: 287 YFLGVGEGIND 297 +L G I + Sbjct: 389 AYLTDGPRIPE 399 >gi|91785645|ref|YP_560851.1| flagellar biosynthesis regulator FlhF [Burkholderia xenovorans LB400] gi|91689599|gb|ABE32799.1| flagellar biosynthesis protein, flhF [Burkholderia xenovorans LB400] Length = 657 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 18/212 (8%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 R V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 423 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 482 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + G+D LA + +++IDT G + ++ I + + Sbjct: 483 VSVHAVKDGADLQ-LALSELRNKH-----IVLIDTIGMSQRDRLVSDQIAMLCHAGQ--- 533 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTH 282 P L +L+AT+ + L +V + A G I+TK+D GG++ V+ + Sbjct: 534 ---PVQRLLLLNATSHGDTLNEVVQAYQRAPDQQPLAGCILTKLDEATNLGGVLDTVIRY 590 Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 K+PV+++ G+ + + + F T C+ Sbjct: 591 KLPVHYVSTGQKVPENLYVATRKFLIKSTFCI 622 >gi|296157467|ref|ZP_06840302.1| flagellar biosynthetic protein FlhF [Burkholderia sp. Ch1-1] gi|295892239|gb|EFG72022.1| flagellar biosynthetic protein FlhF [Burkholderia sp. Ch1-1] Length = 650 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 18/212 (8%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 R V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 416 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 475 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + G+D LA + +++IDT G + ++ I + + Sbjct: 476 VSVHAVKDGADLQ-LALSELRNKH-----IVLIDTIGMSQRDRLVSDQIAMLCHAGQ--- 526 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTH 282 P L +L+AT+ + L +V + A G I+TK+D GG++ V+ + Sbjct: 527 ---PVQRLLLLNATSHGDTLNEVVQAYQRAPDQQPLAGCILTKLDEATNLGGVLDTVIRY 583 Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314 K+PV+++ G+ + + + F T C+ Sbjct: 584 KLPVHYVSTGQKVPENLYVATRKFLIKSTFCI 615 >gi|262303809|gb|ACY44497.1| signal recognition particle [Idiogaryops pumilis] Length = 101 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + P+ F+G GE I+D EPF K F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKVKPFVSKLLGMGD 66 >gi|262303779|gb|ACY44482.1| signal recognition particle [Cryptocellus centralis] gi|262303793|gb|ACY44489.1| signal recognition particle [Eremocosta gigasella] Length = 101 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + P+ F+G GE I+D EPF K F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKVKPFVSKLLGMGD 66 >gi|157813214|gb|ABV81352.1| putative signal recognition particle protein [Prodoxus quinquepunctellus] Length = 101 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 34/55 (61%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V P+ F+G GE I+DLEPF K F + G D Sbjct: 12 VIITKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDLEPFKTKPFINKLLGMGD 66 >gi|315127304|ref|YP_004069307.1| flagellar biosynthesis regulator FlhF [Pseudoalteromonas sp. SM9913] gi|315015818|gb|ADT69156.1| flagellar biosynthesis regulator FlhF [Pseudoalteromonas sp. SM9913] Length = 496 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 13/185 (7%) Query: 113 VILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V +VG GVGKTT + KL+ KV L DT+R A +QL + Sbjct: 280 VFALVGPTGVGKTTTVAKLAALGAQKYGADKVALITTDTYRIGAYEQLATYGRIIGCGVK 339 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + ++ A + Y + +++IDTAG + L + ++R +R+D Sbjct: 340 QVKDANELAEVLY------HLRNKRLVLIDTAGMSQRDLRLTEQLNTLMRN-QRVDIR-- 390 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 S L VL AT N L++ +G I TK+D + G +I I + +++P+ +L Sbjct: 391 -SYL-VLSATAQINVLQETVRHFKKVQLSGCIFTKLDESLSLGEIISIAIQNRLPIGYLT 448 Query: 291 VGEGI 295 G+ + Sbjct: 449 NGQRV 453 >gi|161723184|ref|NP_243303.2| flagellar biosynthesis regulator FlhF [Bacillus halodurans C-125] Length = 381 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 87/185 (47%), Gaps = 17/185 (9%) Query: 116 VVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 +VG GVGKTT I KL+ + KV L DT+R AA++QLK +A + Sbjct: 190 IVGPTGVGKTTTIAKLAAHSVLKKKKKVALITTDTYRIAAVEQLKTYAKILNIPL----- 244 Query: 175 GSDAAALAYEAFKQAQAKKV--DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 + E F++A+ + + D++++D+AGR N++ + + K+I H + Sbjct: 245 ---EVVYSMEDFQKAKNQFIHYDLVLVDSAGRNFRNALYVKELEKVIDF-----KHEAEN 296 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 L VL T ++ + ++ +I TK D T G ++ ++ V ++ G Sbjct: 297 YL-VLSLTGKYRDMKAIIEQFSLVPIKQIIFTKQDETDTYGAMLNMMFEQGKGVAYVTNG 355 Query: 293 EGIND 297 + + D Sbjct: 356 QNVPD 360 >gi|262303847|gb|ACY44516.1| signal recognition particle [Polyxenus fasciculatus] Length = 100 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + P+ F+G GE I+D EPF K F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKVKPFVSKLLGMGD 66 >gi|157813202|gb|ABV81346.1| putative signal recognition particle protein [Speleonectes tulumensis] Length = 101 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V P+ F+G GE I+D EPF K F + + G D Sbjct: 12 VIITKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDFEPFKTKPFVSKLLGMGD 66 >gi|104782803|ref|YP_609301.1| flagellar biosynthesis regulator FlhF [Pseudomonas entomophila L48] gi|95111790|emb|CAK16514.1| flagellar biosynthetic protein FlhF [Pseudomonas entomophila L48] Length = 436 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D++R A +QLK + Sbjct: 218 VIAMVGPAGMGKTTTLAKLAARYVLKYGANNLALVSMDSYRIGAQEQLKTLGRILNVPVT 277 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G A +A + K+V ++IDTAG ++ L + G+ I L Sbjct: 278 YVDPGESLA----QALEPLLRKRV--VLIDTAGLQASDPALRMQLETLAGRGIAAKNYL- 330 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL T+ + L + G G I+TK+D TA G ++ + ++H++PV Sbjct: 331 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETACLGEVLSLAISHELPV 381 Query: 287 YFLGVGEGIND 297 +L G I D Sbjct: 382 AYLTDGPRIPD 392 >gi|89094440|ref|ZP_01167380.1| flagellar biosynthetic protein FlhF, putative [Oceanospirillum sp. MED92] gi|89081332|gb|EAR60564.1| flagellar biosynthetic protein FlhF, putative [Oceanospirillum sp. MED92] Length = 474 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 24/199 (12%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D+ R ++ VG GVGKTT IGKL+ + + + L DT+R AA +QL+ + Sbjct: 255 DYIERGGMLAFVGPTGVGKTTTIGKLAARHVLKYGSSSLALVTTDTYRIAAHEQLRTFGR 314 Query: 164 RTSADF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG----RLHNNSILMAGIGKM 218 V E S E + K++ ++IDTAG H+ S L Sbjct: 315 ILDVPVRVVDENNS-----LDEVLHSLRNKRL--VLIDTAGLNAQEPHSESQLEMLASVT 367 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +R+ K L V+ ++ + + Q + G G +++KMD + G I + Sbjct: 368 LRLKKLL----------VVSCSSQRRVVEQAYNAYQSLGLNGCVLSKMDESGSLGEAISL 417 Query: 279 VVTHKIPVYFLGVGEGIND 297 +V ++PV ++ G+ I D Sbjct: 418 IVEKRLPVTYVTDGQRIPD 436 >gi|10175057|dbj|BAB06156.1| flagella-associated protein [Bacillus halodurans C-125] Length = 375 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 87/185 (47%), Gaps = 17/185 (9%) Query: 116 VVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 +VG GVGKTT I KL+ + KV L DT+R AA++QLK +A + Sbjct: 184 IVGPTGVGKTTTIAKLAAHSVLKKKKKVALITTDTYRIAAVEQLKTYAKILNIPL----- 238 Query: 175 GSDAAALAYEAFKQAQAKKV--DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 + E F++A+ + + D++++D+AGR N++ + + K+I H + Sbjct: 239 ---EVVYSMEDFQKAKNQFIHYDLVLVDSAGRNFRNALYVKELEKVIDF-----KHEAEN 290 Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 L VL T ++ + ++ +I TK D T G ++ ++ V ++ G Sbjct: 291 YL-VLSLTGKYRDMKAIIEQFSLVPIKQIIFTKQDETDTYGAMLNMMFEQGKGVAYVTNG 349 Query: 293 EGIND 297 + + D Sbjct: 350 QNVPD 354 >gi|262303831|gb|ACY44508.1| signal recognition particle [Milnesium tardigradum] Length = 101 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 36/64 (56%) Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F + +I+TK+DG ARGGG + V + P+ F+G GE I+D E F K F + + Sbjct: 3 FKSKVNVASVIITKLDGHARGGGALSAVAATQSPIIFIGTGEYIDDFESFKVKPFVSKLL 62 Query: 312 GCLD 315 G D Sbjct: 63 GMGD 66 >gi|262303857|gb|ACY44521.1| signal recognition particle [Scolopendra polymorpha] Length = 101 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V P+ F+G GE I+D EPF K F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATASPIIFIGTGEHIDDFEPFKVKPFVSKLMGMGD 66 >gi|268678934|ref|YP_003303365.1| flagellar biosynthetic protein FlhF [Sulfurospirillum deleyianum DSM 6946] gi|268616965|gb|ACZ11330.1| flagellar biosynthetic protein FlhF [Sulfurospirillum deleyianum DSM 6946] Length = 423 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 99/222 (44%), Gaps = 37/222 (16%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAAGDTFRSAAIDQLKIWAD--RTS 166 V++ VG GVGKTT I KL+ + S + KV + DT+R A++QL +A R Sbjct: 216 RVMMFVGPTGVGKTTTIAKLAARYSYIQEKRSKVGIITLDTYRIGAVEQLFAYAKMMRLP 275 Query: 167 ADFVC--SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + V ++ + ++L++ DV++IDT G + + + K ++ Sbjct: 276 IEDVVDPNDFNNALSSLSH----------CDVILIDTVGSSQYDKEKLVKLNKFLQ---- 321 Query: 225 LDPHAPHSVLQ-----VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 +S LQ VL A L+++ + LI TK D T G + ++ Sbjct: 322 ------NSQLQIDVNLVLSAGCKLEDLKEIYKNFSFLDIDTLIFTKFDETKAFGTIFSLI 375 Query: 280 VTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITGCLDYGEEK 320 PV + +G+ + +D+ P + DF + C+ G EK Sbjct: 376 YDTDKPVSYFSIGQEVPDDIVP-ASSDF---LVECILEGFEK 413 >gi|262303841|gb|ACY44513.1| signal recognition particle [Polyzonium germanicum] Length = 101 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + P+ F+G GE I+D EPF K F + + G D Sbjct: 12 VIITKLDGHAKGGGALSAVAATESPIIFIGSGEHIDDFEPFKVKPFVSKLLGMGD 66 >gi|262303763|gb|ACY44474.1| signal recognition particle [Abacion magnum] Length = 98 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + P+ F+G GE I+D EPF K F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATQSPIIFIGSGEHIDDFEPFKVKPFVSKLLGMGD 66 >gi|157813196|gb|ABV81343.1| putative signal recognition particle protein [Narceus americanus] Length = 101 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + P+ F+G GE I+D EPF K F + + G D Sbjct: 12 VIITKLDGHAKGGGALSAVAATESPIIFIGSGEHIDDFEPFKVKPFVSKLLGMGD 66 >gi|115350239|ref|YP_772078.1| flagellar biosynthesis regulator FlhF [Burkholderia ambifaria AMMD] gi|115280227|gb|ABI85744.1| GTP-binding signal recognition particle SRP54, G- domain protein [Burkholderia ambifaria AMMD] Length = 588 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 18/191 (9%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ V Sbjct: 358 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 414 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 DA L ++ + +++IDT G + L I + +AP Sbjct: 415 PVHAVKDAGDLE---LALSELRNKHIVLIDTIGMSQRDRALSDQIAMLHGA------NAP 465 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHKIPV 286 L +L+AT+ + L +V + A G I+TK+D GG++ V+ +K+P+ Sbjct: 466 VQRLLLLNATSHGDTLNEVVQAYRSAAEYPDLAGCILTKLDEATHLGGVLDTVIRYKLPI 525 Query: 287 YFLGVGEGIND 297 +++ G+ + + Sbjct: 526 HYVSTGQKVPE 536 >gi|262303767|gb|ACY44476.1| signal recognition particle [Argulus sp. Arg2] Length = 101 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + P+ F+G GE I+D EPF K F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKVKPFVSKLLGMGD 66 >gi|262303799|gb|ACY44492.1| signal recognition particle [Euperipatoides rowelli] gi|262303839|gb|ACY44512.1| signal recognition particle [Peripatus sp. 'Pep'] Length = 101 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 34/55 (61%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V PV F+G GE I+D EPF K F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATGSPVIFIGTGEHIDDFEPFKVKPFVSKLLGMGD 66 >gi|330720587|gb|EGG98854.1| Flagellar biosynthesis protein FlhF [gamma proteobacterium IMCC2047] Length = 482 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 20/193 (10%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 R VI ++G G GKTT I KL+ + + ++ L D++R AA ++L+ Sbjct: 261 RRGVIALLGATGAGKTTTIAKLAVRYALKFGPGQLALVTTDSYRLAAYEELRTLG--RIV 318 Query: 168 DFVCSEIGSDAAALAYEAFKQ--AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 D ++ Y + + A K +++IDTAG AG + ++ L+ L Sbjct: 319 DVPVRQVDE------YNSLDEVLASLKHKSMVLIDTAG-------FHAGDKERMKQLEML 365 Query: 226 DPHAPH-SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 + L VL +T+ N L+ + A G ++TK+D T G ++ +VV + + Sbjct: 366 ENSKVDIKKLLVLPSTSQSNVLKSMYELMATVSLQGCVLTKIDETNSLGEVLSLVVENTL 425 Query: 285 PVYFLGVGEGIND 297 PV ++ G+ I D Sbjct: 426 PVAYITNGQKIPD 438 >gi|289571108|ref|ZP_06451335.1| cell division protein ftsY [Mycobacterium tuberculosis T17] gi|289544862|gb|EFD48510.1| cell division protein ftsY [Mycobacterium tuberculosis T17] Length = 263 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 7/110 (6%) Query: 42 DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLM 97 D+ +++ED L+ +D+G A +V +L ++ + +V + VL DV LI+++ Sbjct: 151 DEDSWQDVEDTLLVADLGPAATASVVSQLRSRLASGNVRTEADARAVLRDV--LINELQP 208 Query: 98 PLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + + + P V+LVVGVNG GKTT +GKL++ + G+ LA+ Sbjct: 209 GMDRSIRALPHAGHPSVLLVVGVNGTGKTTTVGKLARVLVAGGVLAALAS 258 >gi|172059261|ref|YP_001806913.1| flagellar biosynthesis regulator FlhF [Burkholderia ambifaria MC40-6] gi|171991778|gb|ACB62697.1| GTP-binding signal recognition particle SRP54 G- domain protein [Burkholderia ambifaria MC40-6] Length = 588 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 18/191 (9%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ V Sbjct: 358 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 414 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 DA L ++ + +++IDT G + L I + +AP Sbjct: 415 PVHAVKDAGDLE---LALSELRNKHIVLIDTIGMSQRDRALSDQIAMLHGA------NAP 465 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHKIPV 286 L +L+AT+ + L +V + A G I+TK+D GG++ V+ +K+P+ Sbjct: 466 VQRLLLLNATSHGDTLNEVVQAYRSAAEYPDLAGCILTKLDEATHLGGVLDTVIRYKLPI 525 Query: 287 YFLGVGEGIND 297 +++ G+ + + Sbjct: 526 HYVSTGQKVPE 536 >gi|71280427|ref|YP_268259.1| flagellar biosynthesis regulator FlhF [Colwellia psychrerythraea 34H] gi|71146167|gb|AAZ26640.1| flagellar biosynthetic protein FlhF [Colwellia psychrerythraea 34H] Length = 513 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 91/198 (45%), Gaps = 25/198 (12%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWAD 163 D +R V+ +VG GVGKTT I KL+ S +V L + DTFR A +QL + Sbjct: 291 DIINRGGVVALVGPTGVGKTTTIAKLAAGFSQVHGSDQVALISTDTFRIAGFEQLATY-- 348 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM----- 218 + ++ + A + Q +KK +++IDTAG + L + + Sbjct: 349 ---GKIIGCQVSLAKDSQALDILLQQYSKK-KLILIDTAGMGQRDMRLAEQLTALVSNAR 404 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 +R+ L VL A T Q +++ V+ F V +G I TK+D + G +I Sbjct: 405 VRIRNYL----------VLAANTQQGVMQENVDRFKKVP-LSGCIYTKLDESISIGEIIT 453 Query: 278 IVVTHKIPVYFLGVGEGI 295 + + +P+ +L G+ + Sbjct: 454 TSIQNGLPIGYLTDGQRV 471 >gi|157813190|gb|ABV81340.1| putative signal recognition particle protein [Limulus polyphemus] gi|262303777|gb|ACY44481.1| signal recognition particle [Carcinoscorpius rotundicauda] Length = 101 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V P+ F+G GE I+D EPF K F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATHSPIIFIGTGEHIDDFEPFKVKPFVSKLLGMGD 66 >gi|167587838|ref|ZP_02380226.1| flagellar biosynthesis regulator FlhF [Burkholderia ubonensis Bu] Length = 365 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 23/199 (11%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 R V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 127 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG- 185 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V DA L ++ + +++IDT G + + I +L Sbjct: 186 --VPVHAVKDAGDLQ---LALSELRNKHIVLIDTIGMSQRDR----AVSDQIAMLH--GA 234 Query: 228 HAPHSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPI 278 + P L +L+AT+ + L +V + + + AG G I+TK+D GG++ Sbjct: 235 NTPVQRLLLLNATSHGDTLNEVVQAYRSAAGHPDAASAELAGCILTKLDEATHLGGVLDT 294 Query: 279 VVTHKIPVYFLGVGEGIND 297 V+ +K+PV+++ G+ + + Sbjct: 295 VIRYKLPVHYVSTGQKVPE 313 >gi|313200587|ref|YP_004039245.1| GTP-binding signal recognition particle srp54 g- domain-containing protein [Methylovorus sp. MP688] gi|312439903|gb|ADQ84009.1| GTP-binding signal recognition particle SRP54 G- domain protein [Methylovorus sp. MP688] Length = 451 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/255 (23%), Positives = 110/255 (43%), Gaps = 21/255 (8%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102 D V+ ++L+ + A++++I E + R + + + V ++ K L + P Sbjct: 161 DPVKSNTLNMLLSAGFSAALSRQIAENMPDHRTSAEANTW-----VQSILEKNLQAI--P 213 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKI 160 + +R V ++G GVGKTT KL+ + M K+ L D +R +QL+I Sbjct: 214 NEDEILNRGGVFALIGPTGVGKTTTTAKLAARFVMKHGPGKLGLITTDAYRIGGHEQLRI 273 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 + V D A L A ++ + K ++IDT G + ++ I + Sbjct: 274 YGKILG---VMVHAVKDEADLKI-ALEELKGKHT--ILIDTVGVSQKDRMVAEQIAMLSS 327 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 + P L L+AT L V + V G I+TK+D A G + +++ Sbjct: 328 TRQ------PIKKLLCLNATNTGETLTDVVRAYKVKQLDGCIITKLDEAATIGSALDVII 381 Query: 281 THKIPVYFLGVGEGI 295 K+ +Y++ G+ + Sbjct: 382 REKLRLYYVANGQRV 396 >gi|292669762|ref|ZP_06603188.1| flagellar biosynthesis protein FlhF [Selenomonas noxia ATCC 43541] gi|292648559|gb|EFF66531.1| flagellar biosynthesis protein FlhF [Selenomonas noxia ATCC 43541] Length = 457 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 115/253 (45%), Gaps = 21/253 (8%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108 + D L R D V +++ E+L K DV++ + + ++ L + K F Sbjct: 205 IRDALRRQD----VHEELCEDLSGKISITDVNLDSLDSRAAGVLAGYLTQVMK-FTDGLR 259 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMS----DAGLKVMLAAGDTFRSAAIDQLKIWADR 164 PH VV G L+K + + LK L DT+R +A++QLK +A+ Sbjct: 260 LSPHGSRVVAFIGTTGVGKTTTLAKIAAHFVLEQNLKGALITADTYRISAVEQLKKYAEI 319 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + E+ AA L +A + ++K D +++DTAGR N M + +++ R Sbjct: 320 LG---LPVEVVYSAADL-RKAITRHRSK--DFVLVDTAGRSQYNEFQMDELKELLMAHPR 373 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 ++ H L V T Q+A ++ F +V +I TK D T G ++ ++ ++ Sbjct: 374 MEKH-----LVVSATTKEQDAAEIIDRF-SVCAPNRIIFTKTDETRSIGMVLNLLAQREL 427 Query: 285 PVYFLGVGEGIND 297 P+ FL G+ + D Sbjct: 428 PLSFLSNGQSVPD 440 >gi|253998501|ref|YP_003050564.1| flagellar biosynthesis regulator FlhF [Methylovorus sp. SIP3-4] gi|253985180|gb|ACT50037.1| GTP-binding signal recognition particle SRP54 G- domain protein [Methylovorus sp. SIP3-4] Length = 452 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/255 (23%), Positives = 110/255 (43%), Gaps = 21/255 (8%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102 D V+ ++L+ + A++++I E + R + + + V ++ K L + P Sbjct: 162 DPVKSNTLNMLLSAGFSAALSRQIAENMPDHRTSAEANTW-----VQSILEKNLQAI--P 214 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKI 160 + +R V ++G GVGKTT KL+ + M K+ L D +R +QL+I Sbjct: 215 NEDEILNRGGVFALIGPTGVGKTTTTAKLAARFVMKHGPGKLGLITTDAYRIGGHEQLRI 274 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 + V D A L A ++ + K ++IDT G + ++ I + Sbjct: 275 YGKILG---VMVHAVKDEADLKI-ALEELKGKHT--ILIDTVGVSQKDRMVAEQIAMLSS 328 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 + P L L+AT L V + V G I+TK+D A G + +++ Sbjct: 329 TRQ------PIKKLLCLNATNTGETLTDVVRAYKVKQLDGCIITKLDEAATIGSALDVII 382 Query: 281 THKIPVYFLGVGEGI 295 K+ +Y++ G+ + Sbjct: 383 REKLRLYYVANGQRV 397 >gi|415431|gb|AAB27926.1| GTP-binding protein [Drosophila sp.] Length = 168 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 15/98 (15%) Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 +A +A EA K A +VDV+++DTAGR+ +N LM + K+I+V + P VL V Sbjct: 71 SAGIAMEAIKFAHDTRVDVVLVDTAGRMQDNEPLMRSLSKLIKV------NNPDLVLFVG 124 Query: 238 DATTGQNALRQVEMFH-AVAGTT--------GLIMTKM 266 +A G A+ Q+ F+ ++AG + G+++TK+ Sbjct: 125 EALVGNEAVDQLVKFNQSLAGYSSNENRHIDGIVLTKL 162 >gi|332533110|ref|ZP_08408979.1| flagellar biosynthesis protein FlhF [Pseudoalteromonas haloplanktis ANT/505] gi|332037392|gb|EGI73846.1| flagellar biosynthesis protein FlhF [Pseudoalteromonas haloplanktis ANT/505] Length = 422 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 13/187 (6%) Query: 113 VILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V +VG GVGKTT + KL+ KV L DT+R A +QL + Sbjct: 206 VYALVGPTGVGKTTTVAKLAALGAQKYGADKVALITTDTYRIGAYEQLATYGRIIGCGVK 265 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + ++ A + Y + +++IDTAG + L + ++R +R+D Sbjct: 266 QVKDANELAEVLY------HLRNKRLVLIDTAGMSQRDLRLTEQLNTLMRN-QRVDIR-- 316 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 S L VL AT N L++ +G I TK+D + G +I I + +++P+ +L Sbjct: 317 -SYL-VLSATAQINVLQETVRHFKKVQLSGCIFTKLDESLSLGEIISIAIQNRLPIGYLT 374 Query: 291 VGEGIND 297 G+ + + Sbjct: 375 NGQRVPE 381 >gi|262303817|gb|ACY44501.1| signal recognition particle [Limnadia lenticularis] Length = 101 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + PV F+G GE I+DLE F K F + + G D Sbjct: 12 VIITKLDGHAKGGGALSAVAATQSPVIFIGTGEHIDDLESFKTKPFVSKLLGLGD 66 >gi|262303755|gb|ACY44470.1| signal recognition particle [Acanthocyclops vernalis] Length = 101 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I++K+DG A+GGG + V + PV F+G GE I+D EPF K F + G D Sbjct: 12 VIISKLDGHAKGGGALSAVAATQSPVIFIGTGEHIDDFEPFKTKPFVQKLLGMGD 66 >gi|262303765|gb|ACY44475.1| signal recognition particle [Amblyomma sp. 'Amb2'] Length = 101 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V P+ F+G GE I+D EPF K F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATHSPIIFIGTGEHIDDFEPFKVKPFISKLLGMGD 66 >gi|302037623|ref|YP_003797945.1| putative flagellar biosynthetic protein FlhF, GTP binding [Candidatus Nitrospira defluvii] gi|300605687|emb|CBK42020.1| putative Flagellar biosynthetic protein FlhF, GTP binding [Candidatus Nitrospira defluvii] Length = 427 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 15/187 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 + L VG +GVGKT+ I KL+ + + V L DT+R AA++ L+++A+ + Sbjct: 207 IALFVGPSGVGKTSTIAKLATQYGIVEQRSVALITMDTYRPAAVEHLRLYAEVLGIELSV 266 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 + +A A AQA++ ++++IDT G I + R L L+ P Sbjct: 267 AASCEEARAAI------AQAREAELILIDTTGFNPYEPI----TAQRWRGL--LNGAYPM 314 Query: 232 SVLQVLDATTG-QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 V VL A T + + V G L+ TK+D TA GG+ IP+ + G Sbjct: 315 EVHLVLAAGTRVPDLVVSTSQCVDVPGLR-LLFTKLDETAGYGGIFEATHRTGIPLSYWG 373 Query: 291 VGEGIND 297 G+ + D Sbjct: 374 TGQRVPD 380 >gi|157813192|gb|ABV81341.1| putative signal recognition particle protein [Mesocyclops edax] Length = 101 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I++K+DG A+GGG + V + PV F+G GE I+D EPF K F + G D Sbjct: 12 VIISKLDGHAKGGGALSAVAATQSPVIFIGTGEHIDDFEPFKTKPFIQKLLGMGD 66 >gi|262303863|gb|ACY44524.1| signal recognition particle [Streptocephalus seali] Length = 101 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + P+ F+G GE I+D EPF ++ F + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVASTNSPIIFIGTGEHIDDFEPFKSQPFIKKLLGLGD 66 >gi|77359756|ref|YP_339331.1| flagellar biosynthesis regulator FlhF [Pseudoalteromonas haloplanktis TAC125] gi|76874667|emb|CAI85888.1| putative Flagellar biosynthetic protein FlhF(Flagella associated GTP-binding protein) [Pseudoalteromonas haloplanktis TAC125] Length = 496 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 13/185 (7%) Query: 113 VILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V +VG GVGKTT + KL+ KV L DT+R A +QL + Sbjct: 280 VYALVGPTGVGKTTTVAKLAALGAQKYGADKVALITTDTYRIGAYEQLATYGRIIGCGVK 339 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + ++ A + Y + +++IDTAG + L + ++R +R+D Sbjct: 340 QVKDANELAEVLY------HLRNKRLVLIDTAGMSQRDLRLTEQLNTLMRN-QRVDIRN- 391 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 VL AT N L++ +G I TK+D + G +I I + +++P+ +L Sbjct: 392 ---YLVLSATAQINVLQETVRHFKKVQLSGCIFTKLDESLSLGEIISIAIQNRLPIGYLT 448 Query: 291 VGEGI 295 G+ + Sbjct: 449 NGQRV 453 >gi|262303785|gb|ACY44485.1| signal recognition particle [Daphnia magna] Length = 101 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + PV F+G GE I+DLE F K F + + G D Sbjct: 12 VIITKLDGHAKGGGALSAVAATQSPVIFIGTGEHIDDLESFKTKPFISKLLGLGD 66 >gi|307731374|ref|YP_003908598.1| flagellar biosynthetic protein FlhF [Burkholderia sp. CCGE1003] gi|307585909|gb|ADN59307.1| flagellar biosynthetic protein FlhF [Burkholderia sp. CCGE1003] Length = 655 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 18/191 (9%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ V Sbjct: 425 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 481 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 D+A L ++ + +++IDT G + ++ I + R + P Sbjct: 482 SVHAVKDSADLQ---LALSELRNKHIVLIDTIGMSQRDRLVSDQIAMLSRAGQ------P 532 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHKIPV 286 L +L+AT+ + L +V + G I+TK+D GG++ V+ +K+PV Sbjct: 533 VQRLLLLNATSHGDTLNEVVQAYQRGPDQQPLAGCILTKLDEATNLGGVLDTVIRYKLPV 592 Query: 287 YFLGVGEGIND 297 +++ G+ + + Sbjct: 593 HYVSTGQKVPE 603 >gi|323527724|ref|YP_004229877.1| flagellar biosynthetic protein FlhF [Burkholderia sp. CCGE1001] gi|323384726|gb|ADX56817.1| flagellar biosynthetic protein FlhF [Burkholderia sp. CCGE1001] Length = 731 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 18/191 (9%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ V Sbjct: 501 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 557 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 D+A L ++ + +++IDT G + ++ I + R + P Sbjct: 558 SVHAVKDSADLQ---LALSELRNKHIVLIDTIGMSQRDRLVSDQIAMLSRAGQ------P 608 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHKIPV 286 L +L+AT+ + L +V + G I+TK+D GG++ V+ +K+PV Sbjct: 609 VQRLLLLNATSHGDTLNEVVQAYQRGPDQQPLAGCILTKLDEATNLGGVLDTVIRYKLPV 668 Query: 287 YFLGVGEGIND 297 +++ G+ + + Sbjct: 669 HYVSTGQKVPE 679 >gi|311105928|ref|YP_003978781.1| flagellar biosynthesis protein FlhF [Achromobacter xylosoxidans A8] gi|310760617|gb|ADP16066.1| flagellar biosynthesis protein FlhF [Achromobacter xylosoxidans A8] Length = 910 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 33/198 (16%) Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V +VG GVGKTT + KL+ + + +V + D FR A++QL+I+ V Sbjct: 303 VYALVGPTGVGKTTTLAKLAARCVAREGREQVAMLTTDNFRIGALEQLQIYGRLMG---V 359 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNNSILMAGIGKMIRVLKR 224 + DA L + ++K+ ++IDT G ++ + ++ GK +R L Sbjct: 360 PAHSVRDAGEL-RRILAELGSRKI--VLIDTTGISQRDRQVAEQAAMLCNAGKPVRRLL- 415 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG-----TTGLIMTKMDGTARGGGLIPIV 279 VL+A + + L +V HA G I+TK+D R G + Sbjct: 416 -----------VLNAASQGDTLDEVA--HAYRNGVGEDVAGCIITKLDEATRLGAALDTA 462 Query: 280 VTHKIPVYFLGVGEGIND 297 + H++P++++ VG+ + + Sbjct: 463 IRHRLPIHYMSVGQKVPE 480 >gi|254458953|ref|ZP_05072376.1| GTP-binding signal recognition particle SRP54, G-domain [Campylobacterales bacterium GD 1] gi|207084224|gb|EDZ61513.1| GTP-binding signal recognition particle SRP54, G-domain [Campylobacterales bacterium GD 1] Length = 423 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 15/205 (7%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 VI++VG GVGKTT I KL+ + S KV L DT+R A++QL +A R Sbjct: 222 VIMLVGPTGVGKTTSIAKLAARYSYLMQKRYKVGLVVLDTYRIGAVEQLMQYA-RMMKLG 280 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + + + A A + + D ++IDT G ++ I K+ L+ D Sbjct: 281 IETVVDPPEFATALNSLRYC-----DYILIDTMG---SSPYDKNKIEKIYECLEANDTEF 332 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 V+ V+ ++ L+ + ++ TK+D T G + + K P+ + Sbjct: 333 NVDVVLVMPSSIKYEDLKATYDNFSTLNVDTVMFTKLDETMGFGNIFSLAYETKRPISYF 392 Query: 290 GVGEGINDLEPFVAKDFSAVITGCL 314 VG+ + + + DF + CL Sbjct: 393 SVGQEVPEDLVCASSDF---LVECL 414 >gi|262303813|gb|ACY44499.1| signal recognition particle [Metajapyx subterraneus] Length = 101 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + PV F+G GE I+DLE F K F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATQSPVIFIGTGEHIDDLEAFKTKPFVSKLLGMGD 66 >gi|302851237|ref|XP_002957143.1| hypothetical protein VOLCADRAFT_98179 [Volvox carteri f. nagariensis] gi|300257550|gb|EFJ41797.1| hypothetical protein VOLCADRAFT_98179 [Volvox carteri f. nagariensis] Length = 510 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 12/120 (10%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-------SELIHKMLMPL 99 +E+ L+ +D+ + V ++ V+++ + V ++ V DV +ELI M + Sbjct: 113 KEVRRALLEADVSLPVVRRFVKKVEERALGTKV-IEGVTPDVQFIKVVSNELIELMGGGV 171 Query: 100 -SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +K F P +IL+ G+ GVGKTT GKL+ + A +L A D +R AAIDQL Sbjct: 172 GAKDLEPGF---PQIILMAGLQGVGKTTAAGKLALYLKKAKKSCLLVATDVYRPAAIDQL 228 >gi|330836611|ref|YP_004411252.1| GTP-binding signal recognition particle SRP54 G- domain-containing protein [Spirochaeta coccoides DSM 17374] gi|329748514|gb|AEC01870.1| GTP-binding signal recognition particle SRP54 G- domain protein [Spirochaeta coccoides DSM 17374] Length = 396 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/200 (24%), Positives = 87/200 (43%), Gaps = 17/200 (8%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSK-----KMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 +H H +++G GVGKTT I KL+ + V + D++R A +Q+ +A Sbjct: 178 THPAHNYVLLGPTGVGKTTTIAKLAAIFGVIPPPEERRSVAIITLDSYRVGAREQIFAFA 237 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQA-KKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 D + + A E F + + D+++IDT GR ++ L + ++ + Sbjct: 238 D-------ALNLPAHQAHDENELFSVLDSLEGTDLVLIDTIGRSPRDNELSIKLTSLLSI 290 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 + + ++A+RQ F GLI+TK+D T G I + Sbjct: 291 PTSESTAFYLCIGASMKKADIEDAVRQTAPF----SLRGLIITKLDETRTVGNFISLAAE 346 Query: 282 HKIPVYFLGVGEGINDLEPF 301 +P+ F+ G+ I+D+ P Sbjct: 347 KSLPLTFVTDGQKISDIHPM 366 >gi|262303827|gb|ACY44506.1| signal recognition particle [Hexagenia limbata] Length = 101 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + PV F+G GE I+DLE F K F + + G D Sbjct: 12 VIITKLDGHAKGGGALSAVAATQSPVIFIGTGEHIDDLESFKTKPFISKLLGMGD 66 >gi|170694381|ref|ZP_02885535.1| GTP-binding signal recognition particle SRP54 G- domain [Burkholderia graminis C4D1M] gi|170140804|gb|EDT08978.1| GTP-binding signal recognition particle SRP54 G- domain [Burkholderia graminis C4D1M] Length = 742 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 18/191 (9%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ V Sbjct: 512 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 568 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 D+A L ++ + +++IDT G + ++ I + R + P Sbjct: 569 SVHAVKDSADLQ---LALSELRNKHIVLIDTIGMSQRDRLVSDQIAMLSRAGQ------P 619 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHKIPV 286 L +L+AT+ + L +V + G I+TK+D GG++ V+ +K+PV Sbjct: 620 VQRLLLLNATSHGDTLNEVVQAYQRGPDQQPLAGCILTKLDEATNLGGVLDTVIRYKLPV 679 Query: 287 YFLGVGEGIND 297 +++ G+ + + Sbjct: 680 HYVSTGQKVPE 690 >gi|330502781|ref|YP_004379650.1| flagellar biosynthesis regulator FlhF [Pseudomonas mendocina NK-01] gi|328917067|gb|AEB57898.1| flagellar biosynthesis regulator FlhF [Pseudomonas mendocina NK-01] Length = 436 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 21/213 (9%) Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLA 145 ++ L H + P +P VI +VG G+GKTT + KL+ + + +V L Sbjct: 198 LAHLAHAIKTPKVEPLEEG-----GVIALVGPAGMGKTTTLAKLAARYVLKYGAQQVALV 252 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 + D+FR A +QLK + G S ALA A K+ V+++DTAG Sbjct: 253 SMDSFRIGAQEQLKTLGRILGVSVTQIDPGQSLLQALAPLAKKR-------VVLVDTAGL 305 Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264 N+ L + + + + VL AT+ L+ + G G I+T Sbjct: 306 PGNDPALRLQLESLASARIKAKNYL------VLAATSQSQVLKAAYHSYKRCGLAGCILT 359 Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 K+D A G ++ + + ++PV ++ G I D Sbjct: 360 KLDEAASLGEVLGLAIGQQLPVAYVTDGPRIPD 392 >gi|328479898|gb|EGF48969.1| signal recognition particle-docking protein FtsY [Lactobacillus rhamnosus MTCC 5462] Length = 67 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 38/65 (58%) Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 AI QL+ W R V + G D AA+ ++ ++A+ + DV+++DTAGRL N LM Sbjct: 1 AIQQLQEWGRRVEVPVVATNPGGDPAAVVFDGVRRAKDEGYDVVLVDTAGRLQNKVNLMN 60 Query: 214 GIGKM 218 + K+ Sbjct: 61 ELNKL 65 >gi|241628780|ref|XP_002410011.1| signal recognition particle 54 kD protein, putative [Ixodes scapularis] gi|215503285|gb|EEC12779.1| signal recognition particle 54 kD protein, putative [Ixodes scapularis] Length = 196 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 17/162 (10%) Query: 15 RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 RK+T S S I ++ + D + +E+ L+ +DI + + +++ E + R Sbjct: 42 RKITNALRSLS-------NATIINKEVLDSMLKEICTALLEADINIKLVKQLRENV---R 91 Query: 75 YAKDVSVQRVLYDVSELIH----KMLMPLSKP--FNWDFSH-RPHVILVVGVNGVGKTTV 127 A D+ + +I K L+ L P W + + ++I+ VG+ G GKTT Sbjct: 92 SAIDIDEMGAGLNKRRMIQSAVFKELIKLVDPGVKAWQPTKGKNNIIMFVGLQGSGKTTT 151 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 KL+ G K L DTFR+ A DQLK A + F Sbjct: 152 CTKLAYHYLKKGWKTCLVCADTFRAGAFDQLKQNATKARIPF 193 >gi|171320643|ref|ZP_02909662.1| GTP-binding signal recognition particle SRP54 G- domain [Burkholderia ambifaria MEX-5] gi|171094129|gb|EDT39217.1| GTP-binding signal recognition particle SRP54 G- domain [Burkholderia ambifaria MEX-5] Length = 379 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 23/196 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ V Sbjct: 144 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 200 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 DA L ++ + +++IDT G + L I + +AP Sbjct: 201 PVHAVKDAGDLE---LALSELRNKHIVLIDTIGMSQRDRALSDQIAMLHGA------NAP 251 Query: 231 HSVLQVLDATTGQNALRQVEMFH---------AVAGTTGLIMTKMDGTARGGGLIPIVVT 281 L +L+AT+ + L +V + A G I+TK+D GG++ V+ Sbjct: 252 VQRLLLLNATSHGDTLNEVVQAYRSAAEYPRAATPDLAGCILTKLDEATHLGGVLDTVIR 311 Query: 282 HKIPVYFLGVGEGIND 297 +K+P++++ G+ + + Sbjct: 312 YKLPIHYVSTGQKVPE 327 >gi|78776902|ref|YP_393217.1| flagellar biosynthesis regulator FlhF [Sulfurimonas denitrificans DSM 1251] gi|78497442|gb|ABB43982.1| GTP-binding signal recognition particle SRP54, G-domain [Sulfurimonas denitrificans DSM 1251] Length = 362 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 12/186 (6%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 VI++VG GVGKTT + KL+ + S KV L DT+R A++QL +A Sbjct: 161 VIMLVGPTGVGKTTSVAKLAARYSFLMQKKYKVGLIVLDTYRIGAVEQLMQYARMMKLAI 220 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 SD A+ A ++ K D ++IDT G ++ I K+ L D Sbjct: 221 ETVVDPSDFAS-ALDSLKYC-----DYILIDTMG---SSPYDRNKIEKIYECLDGNDTKY 271 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 V+ V+ ++ L+ + L+ TK+D T G + + K P+ + Sbjct: 272 NIDVVLVMPSSIKYEDLKATYENFSSLNVDTLMFTKLDETRGFGNIFSLAYEIKKPISYF 331 Query: 290 GVGEGI 295 VG+ + Sbjct: 332 SVGQEV 337 >gi|298528404|ref|ZP_07015808.1| GTP-binding signal recognition particle SRP54 G- domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298512056|gb|EFI35958.1| GTP-binding signal recognition particle SRP54 G- domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 367 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 25/199 (12%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 + ++G +GVGKTT + +L+ + + G+K+ L DT + LK +AD + F+ Sbjct: 166 IHCLMGPSGVGKTTTVLRLALESRNIKPGMKICLVNNDTQHAGGRLFLKHYADLSGFSFM 225 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR-LHNN---SILMAGIGKMIRVLKRLD 226 EI S A ++ KQA+ +K D++ +DT G H+N S+ M + + R L Sbjct: 226 --EIKS---AQDLKSLKQAR-EKFDLVFMDTPGLGPHDNVQDSLWMKHMKNIQRHL---- 275 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 VL L ++ LI TK+D G L+ +P Sbjct: 276 ---------VLSPVYAHEQLDNYLQKYSRDDLNSLIWTKLDEACSYGTLVNASWKSALPA 326 Query: 287 YFLGVGEGINDLEPFVAKD 305 +LG G+G+ ++D Sbjct: 327 SYLGFGKGLRHCSTSASRD 345 >gi|186477708|ref|YP_001859178.1| flagellar biosynthesis regulator FlhF [Burkholderia phymatum STM815] gi|184194167|gb|ACC72132.1| GTP-binding signal recognition particle SRP54 G- domain [Burkholderia phymatum STM815] Length = 644 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 36/200 (18%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIW--------- 161 V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 414 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVSVH 473 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 A + SAD LA + +++IDT G + ++ I + R Sbjct: 474 AVKDSADLT----------LALSELRNKH-----IVLIDTIGMSQRDRLVSDQIAMLCRA 518 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIP 277 + P L +L+AT+ + L +V + A G I+TK+D G ++ Sbjct: 519 GQ------PVQRLLLLNATSHGDTLNEVVQAYQNAPDQQPLAGCILTKLDEATNLGSVLD 572 Query: 278 IVVTHKIPVYFLGVGEGIND 297 V+ +K+PV++ G+ + + Sbjct: 573 TVIRYKLPVHYASTGQKVPE 592 >gi|262303855|gb|ACY44520.1| signal recognition particle [Scutigerella sp. 'Scu3'] Length = 101 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + P+ F+G GE +D EPF K F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHTDDFEPFKVKPFVSKLLGMGD 66 >gi|153952395|ref|YP_001397329.1| flagellar biosynthesis regulator FlhF [Campylobacter jejuni subsp. doylei 269.97] gi|152939841|gb|ABS44582.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp. doylei 269.97] Length = 481 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 14/190 (7%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 ++++VG GVGKTT + KL+ + + D K + DT+R A++QL +A + Sbjct: 283 IMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPII 342 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 S D EA K +V+++DT G N+ + + K L + +A Sbjct: 343 DSIEPKDLD----EAIKSLN--NCEVILVDTIG---NSQYDQSKLAKTKEFL--IHSNAE 391 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 V V+ A L + + LI+TK D T G + ++ IP+ F Sbjct: 392 IDVNLVVSANIKHEDLMENYKNFSFLNIDTLIITKFDETKVFGNIFSLIYETNIPLSFFS 451 Query: 291 VGEGI-NDLE 299 G+ + +DLE Sbjct: 452 TGQEVPDDLE 461 >gi|157813194|gb|ABV81342.1| putative signal recognition particle protein [Mastigoproctus giganteus] Length = 101 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + P+ F+G GE I+D EPF F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKVNPFVSKLLGMGD 66 >gi|42524689|ref|NP_970069.1| flagellar biosynthesis protein [Bdellovibrio bacteriovorus HD100] gi|39576899|emb|CAE78128.1| flagellar biosynthesis protein [Bdellovibrio bacteriovorus HD100] Length = 467 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 87/196 (44%), Gaps = 29/196 (14%) Query: 117 VGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VG G GKT+ + K++ +M G K+ L DTF+ A DQ+KI+A + F Sbjct: 269 VGPAGSGKTSALIKMASQMVVREGKKIALFTTDTFKVGAADQMKIYAQILNVPFSVIRTQ 328 Query: 176 SDAAALA-YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 +D L Y A VD +++D G L + I++LK L P P ++ Sbjct: 329 NDWTNLMRYLA-------NVDCVLVDYTG-------LSLKSNEEIQMLKSLLP--PAALN 372 Query: 235 QVLDATTGQNA----LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 + T NA ++ ++V G +I T +D + + G + + +P++ G Sbjct: 373 PNIHLTLSTNAKDGDATELGRRYSVLGYKDVIFTSLDESTQHGTIYNFMKRFDVPLHSFG 432 Query: 291 VGEGINDLEPFVAKDF 306 +G P V +DF Sbjct: 433 IG-------PRVPEDF 441 >gi|90021811|ref|YP_527638.1| flagellar biosynthetic protein FlhF [Saccharophagus degradans 2-40] gi|89951411|gb|ABD81426.1| GTP-binding signal recognition particle SRP54, G-domain [Saccharophagus degradans 2-40] Length = 527 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 92/199 (46%), Gaps = 31/199 (15%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V VG GVGKTT I KL+ + + + KV + DT+R A DQL+ + Sbjct: 319 VFAFVGPTGVGKTTTIAKLAARFVLENGPGKVAIITTDTYRVGAHDQLR---------SL 369 Query: 171 CSEIGSDAAALAYE---AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM--IRVLKRL 225 +G AL + A K+ ++++DTAG +++L + ++ ++R+ Sbjct: 370 GRILGVPVRALDKDHSLPVLLASLKQFPLILVDTAGFRQGDALLKEQLRQLDTCPTMRRI 429 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL---IMTKMDGTARGGGLIPIVVTH 282 A +S LQ L A+ HA AG G+ ++TK+D + G + ++V Sbjct: 430 LVMACNSQLQTLKASV-----------HAYAGMRGVDACVITKVDESLSMGEALSVLVEK 478 Query: 283 KIPVYFLGVGEGI-NDLEP 300 +PV + G+ I D+ P Sbjct: 479 SVPVAYTTDGQEIPKDIAP 497 >gi|167946142|ref|ZP_02533216.1| signal recognition particle protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 222 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 34/57 (59%) Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TG+I+TK DG ARGG + I P+ FLGVGE ++ LEPF ++ I G D Sbjct: 4 TGVILTKTDGDARGGAALSIRHITGKPIKFLGVGEKVDALEPFHPDRVASRILGMGD 60 >gi|325302918|tpg|DAA34489.1| TPA_inf: signal recognition particle subunit Srp54 [Amblyomma variegatum] Length = 160 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 17/152 (11%) Query: 15 RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT-- 72 RK+T S S I ++ + D + +E+ L+ +DI + + +++ E + + Sbjct: 15 RKITNALRSLS-------NATIINKEVLDSMLKEICTALLEADINIKLVKQLRENVRSVI 67 Query: 73 --KRYAKDVSVQRVLYDVSELIHKMLMPLSKP--FNWDFSH-RPHVILVVGVNGVGKTTV 127 A ++ +R+ + + K L+ L P W + + +VI+ VG+ G GKTT Sbjct: 68 DIDEMAAGLNKRRM---IQSAVFKELIKLVDPGVKAWQPTKGKNNVIMFVGLQGSGKTTT 124 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 KL+ G K L DTFR+ A DQLK Sbjct: 125 CTKLAYHYLKKGWKTCLVCADTFRAGAFDQLK 156 >gi|262303803|gb|ACY44494.1| signal recognition particle [Hanseniella sp. 'Han2'] Length = 101 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + P+ F+G GE +D EPF K F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHTDDFEPFKVKPFISKLLGMGD 66 >gi|289759043|ref|ZP_06518421.1| predicted protein [Mycobacterium tuberculosis T85] gi|289714607|gb|EFD78619.1| predicted protein [Mycobacterium tuberculosis T85] Length = 250 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 7/101 (6%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLMPLSKP 102 +++ED L+ +D+G A +V +L ++ + +V + VL DV LI+++ + + Sbjct: 152 QDVEDTLLVADLGPAATASVVSQLRSRLASGNVRTEADARAVLRDV--LINELQPGMDRS 209 Query: 103 FN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 + P V+LVVGVNG GKTT +GKL++ + G +V Sbjct: 210 IRALPHAGHPSVLLVVGVNGTGKTTTVGKLARVLVADGRRV 250 >gi|262303845|gb|ACY44515.1| signal recognition particle [Peripatoides novaezealandiae] Length = 101 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/46 (50%), Positives = 30/46 (65%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +I+TK+DG A+GGG + V PV F+G GE I+D EPF K F Sbjct: 12 VIVTKLDGLAKGGGALSAVAATGSPVIFIGTGEHIDDFEPFKVKPF 57 >gi|215447185|ref|ZP_03433937.1| cell division protein ftsY [Mycobacterium tuberculosis T85] Length = 254 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 60/106 (56%), Gaps = 7/106 (6%) Query: 42 DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLM 97 D+ +++ED L+ +D+G A +V +L ++ + +V + VL DV LI+++ Sbjct: 151 DEDSWQDVEDTLLVADLGPAATASVVSQLRSRLASGNVRTEADARAVLRDV--LINELQP 208 Query: 98 PLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 + + + P V+LVVGVNG GKTT +GKL++ + G +V Sbjct: 209 GMDRSIRALPHAGHPSVLLVVGVNGTGKTTTVGKLARVLVADGRRV 254 >gi|262303795|gb|ACY44490.1| signal recognition particle [Ephemerella inconstans] Length = 101 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + PV ++G GE I+DLE F K F + + G D Sbjct: 12 VIITKLDGHAKGGGALSAVAATQSPVIYIGTGEHIDDLESFKTKPFISKLLGMGD 66 >gi|262303843|gb|ACY44514.1| signal recognition particle [Phrynus marginemaculatus] Length = 101 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+D A+GGG + V + P+ F+G GE I+D EPF K F + + G D Sbjct: 12 VIVTKLDSHAKGGGALSAVAATQSPITFIGTGEHIDDFEPFKVKPFVSKLLGMGD 66 >gi|262303821|gb|ACY44503.1| signal recognition particle [Leiobunum verrucosum] Length = 101 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V P+ F+G GE ++D EPF K F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATCSPIIFIGTGEHVDDFEPFKVKPFVSKLLGMGD 66 >gi|119470001|ref|ZP_01612806.1| flagellar biosynthesis regulator FlhF [Alteromonadales bacterium TW-7] gi|119446711|gb|EAW27984.1| flagellar biosynthesis regulator FlhF [Alteromonadales bacterium TW-7] Length = 491 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 13/185 (7%) Query: 113 VILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V +VG GVGKTT + KL+ KV L DT+R A +QL + Sbjct: 275 VYALVGPTGVGKTTTVAKLAALGAQKYGADKVALITTDTYRIGAYEQLATYGRIIGCGVK 334 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + ++ A + Y + +++IDTAG + L + ++R +R+D Sbjct: 335 QVKDANELAEVLY------HLRNKRLVLIDTAGMSQRDLRLTEQLNTLMRN-QRVDIR-- 385 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 S L VL AT+ + L++ +G I TK+D + G +I I + +++P+ +L Sbjct: 386 -SYL-VLSATSQIHVLQETVRHFKKVQLSGCIFTKLDESLSLGEIISIAIQNRLPIGYLT 443 Query: 291 VGEGI 295 G+ + Sbjct: 444 NGQRV 448 >gi|207109480|ref|ZP_03243642.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori HPKX_438_CA4C1] Length = 185 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 23/178 (12%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + ++++VG GVGKTT + KL+ + S KV + D +R A++QL +A++ Sbjct: 20 RQKRILMLVGPTGVGKTTTLAKLAARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKM 79 Query: 166 ----SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 A + + AL Y D +++DT G + +AG+ + I Sbjct: 80 KMSIEAVIDIKDFAKEIEALEY----------CDFILVDTTGHSQYDKEKIAGLKEFI-- 127 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 D V VL TT ++ + V G LI TK+D + G L +V Sbjct: 128 ----DGGYNIDVSLVLSVTTKYEDMKDIYDSFGVLGIDTLIFTKLDESRGLGNLFSLV 181 >gi|300694353|ref|YP_003750326.1| flagellar biosynthetic protein flhf [Ralstonia solanacearum PSI07] gi|299076390|emb|CBJ35706.1| putative flagellar biosynthetic protein flhF [Ralstonia solanacearum PSI07] Length = 607 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 88/187 (47%), Gaps = 14/187 (7%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + + +V L + D++R +QL+I+ V Sbjct: 381 VFALMGPTGVGKTTTTAKLAARFVLRHGASRVALLSTDSYRIGGHEQLRIYGKILG---V 437 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 DA L+ ++ V++IDT G + + + + +L + P Sbjct: 438 TVHAVKDAQDLS---LALGDLREKHVVLIDTIGMSQRDR----AVSEQMAMLHAVGPSIK 490 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 L +L+AT+ L +V + A G I+TK+D A G + +++ H++P++++ Sbjct: 491 R--LLLLNATSNGKTLDEVVSAYRDANLAGCILTKIDEAASVGHAMDVMIRHRLPLHYVS 548 Query: 291 VGEGIND 297 G+ + + Sbjct: 549 YGQRVPE 555 >gi|90411038|ref|ZP_01219052.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK] gi|90328251|gb|EAS44562.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK] Length = 586 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 29/193 (15%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V+ ++G GVGKTT I KL+ + M ++ L DT+R A +QL + Sbjct: 368 VVALLGPTGVGKTTTIAKLAARAAMDFGADEIALVTTDTYRIGAHEQLATYG----RIMG 423 Query: 171 CS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIGKMIRVL 222 C + DA LA + Q + ++ ++++DTAG RL LM G IR Sbjct: 424 CPVRVAKDAEELA-DILHQLRHRR--LVLLDTAGMGQRDIRLSEQLDTLMQNSGAHIRSF 480 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 L A VLQ +E F + +G ++TK+D + G ++ + + + Sbjct: 481 LVLPSTAQRRVLQET-----------IEHFRRIP-LSGCVLTKLDESLSLGEVMCVTIQN 528 Query: 283 KIPVYFLGVGEGI 295 +P+ +L G+ + Sbjct: 529 ALPIAYLADGQRV 541 >gi|117926319|ref|YP_866936.1| GTP-binding signal recognition particle [Magnetococcus sp. MC-1] gi|117610075|gb|ABK45530.1| GTP-binding signal recognition particle SRP54, G- domain [Magnetococcus sp. MC-1] Length = 452 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 18/190 (9%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG----DTFRSAAIDQLKIWADRTSA 167 VI++VG GVGKTT + K++ +D L + G DTFR A+ QL+ +A Sbjct: 251 RVIVLVGPTGVGKTTTLAKIA---ADLLLNRRRSVGMITLDTFRVGAVAQLETYAKLLQV 307 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V + S+ A + + D +++DT G N + G ++ V+ Sbjct: 308 RLVVARSLSEVKAGMH------ALNRCDYILVDTVGSSPYNRRQVNSTGSLLPVMGE--- 358 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 L + A + + V + TGLI TK+D T G L+ + + ++P+ Sbjct: 359 --DRETLLCMAANVRETEQQAVFRRFSTLNPTGLIFTKLDETVTFGNLLNVGLRARLPLT 416 Query: 288 FLGVGEGIND 297 G+ + + Sbjct: 417 MYADGQRVPE 426 >gi|281207982|gb|EFA82160.1| ARF/SAR superfamily protein [Polysphondylium pallidum PN500] Length = 547 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 32/175 (18%) Query: 44 GVREELEDLLIRSDIGVAV------------AQKIVEELLTKRYAKDVSVQRVLYDVSEL 91 G++E L L +++D G+AV A+ + L KR V V+ + L Sbjct: 243 GMKEGLWSLFVQNDFGIAVSDLTTMVRLNSGARSLYANLYFKRRNSIVPVR----SPNPL 298 Query: 92 IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 I L P+SK FS + + IL+ G++GVGKTT++ K A G+ R Sbjct: 299 IRFFLKPISK-LPSLFSRKEYKILMYGLDGVGKTTLLYK-------------FARGEFVR 344 Query: 152 SAAIDQLKIW-ADRTSADFVCSEIGSDAAALAYEAFKQA-QAKKVDVLIIDTAGR 204 + + + + S DF+C +IG + + + Q + + IID+ R Sbjct: 345 TLPTNGYNVEVVEYKSCDFICWDIGYNTSKPVVPVWHHYIQDTQALIFIIDSTDR 399 >gi|94500296|ref|ZP_01306829.1| flagellar biosynthesis regulator FlhF [Oceanobacter sp. RED65] gi|94427595|gb|EAT12572.1| flagellar biosynthesis regulator FlhF [Oceanobacter sp. RED65] Length = 481 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 34/197 (17%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIW--------- 161 V +VG G GKTT I K++ + + + L D +R AA DQLK Sbjct: 272 VYAMVGPTGAGKTTTIAKMAVRFTLEHENASIGLVTMDNYRLAAHDQLKTLGQILGVPVQ 331 Query: 162 -ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 AD+ C + SD D+++IDTAG + +L + ++ Sbjct: 332 VADQEHTLSKCLDELSD----------------CDLVLIDTAGLTPQHPMLNYQLEQLAS 375 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280 + R+ H++L L AT+ LR+V + AG G ++TK+D + G + ++ Sbjct: 376 LRGRV-----HTLL-TLPATSTSRVLRKVYHNYKAAGIGGCVLTKLDEASSLGDALSALL 429 Query: 281 THKIPVYFLGVGEGIND 297 + + + G+ I D Sbjct: 430 ESGLDLSYATDGQRIPD 446 >gi|46912556|emb|CAG19348.1| hypothetical flagellar biosynthesis protein FlhF [Photobacterium profundum SS9] Length = 570 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 29/193 (15%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V+ ++G GVGKTT I KL+ + M ++ L DT+R A +QL + Sbjct: 352 VVALLGPTGVGKTTTIAKLAARAAMDFGADEIALVTTDTYRIGAHEQLATYG----RILG 407 Query: 171 CS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIGKMIRVL 222 C + DA LA + Q + ++ ++++DTAG RL LM G IR Sbjct: 408 CPVRVAKDAEELA-DILHQLRHRR--LVLLDTAGMGQRDIRLSEQLDTLMQNSGAHIRSF 464 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 L A VLQ +E F + +G ++TK+D + G ++ + + + Sbjct: 465 LVLPSTAQRRVLQ-----------ETIEHFRRIP-LSGCVLTKLDESLSLGEVMCVTIQN 512 Query: 283 KIPVYFLGVGEGI 295 +P+ +L G+ + Sbjct: 513 ALPIAYLADGQRV 525 >gi|161936323|ref|YP_129150.2| flagellar biosynthesis regulator FlhF [Photobacterium profundum SS9] Length = 580 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 29/193 (15%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V+ ++G GVGKTT I KL+ + M ++ L DT+R A +QL + Sbjct: 362 VVALLGPTGVGKTTTIAKLAARAAMDFGADEIALVTTDTYRIGAHEQLATYG----RILG 417 Query: 171 CS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIGKMIRVL 222 C + DA LA + Q + ++ ++++DTAG RL LM G IR Sbjct: 418 CPVRVAKDAEELA-DILHQLRHRR--LVLLDTAGMGQRDIRLSEQLDTLMQNSGAHIRSF 474 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 L A VLQ +E F + +G ++TK+D + G ++ + + + Sbjct: 475 LVLPSTAQRRVLQ-----------ETIEHFRRIP-LSGCVLTKLDESLSLGEVMCVTIQN 522 Query: 283 KIPVYFLGVGEGI 295 +P+ +L G+ + Sbjct: 523 ALPIAYLADGQRV 535 >gi|226944864|ref|YP_002799937.1| flagellar biosynthesis protein [Azotobacter vinelandii DJ] gi|226719791|gb|ACO78962.1| flagellar biosynthesis protein [Azotobacter vinelandii DJ] Length = 758 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 20/193 (10%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG GVGKTT KL+ + M +V L + D+FR A +QL+I+ A + Sbjct: 192 VIALVGPTGVGKTTTAAKLAARYVMRHGASQVALISTDSFRIGAHEQLRIY-----ARLL 246 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI------GKMIRVLKR 224 E+ + AA E A K ++IIDT G + L+ I G+ +R++ Sbjct: 247 GVEVHTLAAVAPLEPLLAGLADK-RLVIIDTVGMSQRDRRLLTQINQLGAAGRPVRLMLL 305 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 L+ L+ + T Q A A I++K D AR G ++ I++ H + Sbjct: 306 LNAACHGDTLEEVVGTY------QRAALAAGARLRDCIVSKCDEAARLGPVLDILMRHGL 359 Query: 285 PVYFLGVGEGIND 297 + +L G+ + + Sbjct: 360 RLNYLTSGQQVPE 372 >gi|203284191|ref|YP_002221931.1| flagellar-associated GTP-binding protein [Borrelia duttonii Ly] gi|203287730|ref|YP_002222745.1| flagellar-associated GTP-binding protein [Borrelia recurrentis A1] gi|201083634|gb|ACH93225.1| flagellar-associated GTP-binding protein [Borrelia duttonii Ly] gi|201084950|gb|ACH94524.1| flagellar-associated GTP-binding protein [Borrelia recurrentis A1] Length = 393 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 90/195 (46%), Gaps = 29/195 (14%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSK----KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + + ++VG GVGKTT I KL+ D L + + D +R A Q++ + D Sbjct: 178 KKRIFILVGPTGVGKTTTIAKLAAIYGINSDDKNLNIKIITIDNYRIGAKKQIQTYGDI- 236 Query: 166 SADFVCSEIGSDAAALAYEAFKQ-----AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 +G A+ E+FK Q+K D+++IDT G+ + + +A + +++ Sbjct: 237 --------MGIPVKAI--ESFKDLKEEITQSKDFDLVLIDTIGKSPKDFMKLAEMKELLN 286 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPI 278 R D +V +TT + ++ E+FH + +I TK+D T G LI + Sbjct: 287 ACGR-DAEFHLAV----SSTTKTSDIK--EIFHQFSPFSYKTVIFTKLDETTCVGNLISL 339 Query: 279 VVTHKIPVYFLGVGE 293 + + V ++ G+ Sbjct: 340 IHEMRKEVSYVTDGQ 354 >gi|290559167|gb|EFD92526.1| signal recognition particle GTPase SRP54 [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 107 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P + V D+ TG + ++Q E+F G I++K D +GG ++ I K P+ FL Sbjct: 24 PDLTIFVGDSLTGNDVVKQAEVFDKEIGIDVNILSKTDVDKKGGAVLSISYVTKKPILFL 83 Query: 290 GVGEGINDLEPF 301 G G+ DL PF Sbjct: 84 GTGQSYTDLIPF 95 >gi|262303805|gb|ACY44495.1| signal recognition particle [Hadrurus arizonensis] gi|262303807|gb|ACY44496.1| signal recognition particle [Heterometrus spinifer] Length = 101 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+D A+GGG + V + P+ F+G GE ++D EPF K F + + G D Sbjct: 12 VIVTKLDSHAKGGGALSAVAATQSPIIFIGTGEHVDDFEPFKVKPFVSKLLGMGD 66 >gi|313895912|ref|ZP_07829466.1| flagellar biosynthesis protein FlhF [Selenomonas sp. oral taxon 137 str. F0430] gi|312975337|gb|EFR40798.1| flagellar biosynthesis protein FlhF [Selenomonas sp. oral taxon 137 str. F0430] Length = 472 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 120/253 (47%), Gaps = 21/253 (8%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF- 107 + D L R D V +++ EEL K D+++ + E++ L + K F Sbjct: 220 IRDALKRQD----VRKELREELAAKVPVADINLDSLSPRAKEVLAGYLSQVMK-FTDGLR 274 Query: 108 --SHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADR 164 +H V+ +G GVGKTT + K++ + LK L DT+R +A++QLK +A+ Sbjct: 275 LGAHGSRVVAFIGTTGVGKTTTLAKVAAHFVLEQNLKGALITADTYRISAVEQLKKYAEI 334 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + E+ AA L +A + ++K D +++DTAGR N M + +++ R Sbjct: 335 LG---LPVEVVYSAADLK-KAIARHRSK--DFILVDTAGRSQYNDFQMDELKQLLAAHPR 388 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 ++ H V+ ATT + ++ + +I TK D T G ++ ++ ++ Sbjct: 389 MEKHL------VVSATTKEQDAAEIMARFSACKPDRIIFTKTDETRSVGVVLNLLAGKEL 442 Query: 285 PVYFLGVGEGIND 297 P+ FL G+ + D Sbjct: 443 PLSFLSNGQSVPD 455 >gi|38047671|gb|AAR09738.1| similar to Drosophila melanogaster Gtp-bp [Drosophila yakuba] Length = 126 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 20/133 (15%) Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 +VDV+++DTAGR+ +N LM + K+I+V + P VL V +A G A+ Q+ F Sbjct: 2 RVDVVLVDTAGRMQDNEPLMRSLSKLIKV------NNPDLVLFVGEALVGNEAVDQLVKF 55 Query: 253 H-AVAGTT---------GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 + ++A + G+++TK D + G I + P+ F+G G+ DL+ Sbjct: 56 NQSLADYSSNENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLK-- 113 Query: 302 VAKDFSAVITGCL 314 A + +AV+ + Sbjct: 114 -AINVNAVVNSLM 125 >gi|161523357|ref|YP_001578369.1| flagellar biosynthesis regulator FlhF [Burkholderia multivorans ATCC 17616] gi|189351870|ref|YP_001947498.1| flagellar biosynthesis regulator FlhF [Burkholderia multivorans ATCC 17616] gi|160340786|gb|ABX13872.1| GTP-binding signal recognition particle SRP54 G- domain [Burkholderia multivorans ATCC 17616] gi|189335892|dbj|BAG44962.1| flagellar biosynthesis protein [Burkholderia multivorans ATCC 17616] Length = 583 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 23/199 (11%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 R V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 345 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG- 403 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V DA L+ ++ + +++IDT G + + I +L Sbjct: 404 --VPVHAVKDAGDLS---LALSELRNKHIVLIDTIGMSQRDR----AVSDQIAMLH--GA 452 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGT---------TGLIMTKMDGTARGGGLIPI 278 P L +L+AT+ + L +V + AG G I+TK+D GG + Sbjct: 453 STPVQRLLLLNATSHGDTLNEVVQAYRSAGDRADLAGPDLAGCILTKLDEATHLGGALDT 512 Query: 279 VVTHKIPVYFLGVGEGIND 297 V+ +K+PV+++ G+ + + Sbjct: 513 VIRYKLPVHYVSTGQKVPE 531 >gi|322375335|ref|ZP_08049848.1| signal recognition particle-docking protein FtsY [Streptococcus sp. C300] gi|321279598|gb|EFX56638.1| signal recognition particle-docking protein FtsY [Streptococcus sp. C300] Length = 274 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/91 (41%), Positives = 50/91 (54%), Gaps = 8/91 (8%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FS 108 LI SD+GV VA + EEL + ++ L V +I K++ K N+D F Sbjct: 172 LIMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDEQIHFQ 229 Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSD 137 V+L VGVNGVGKTT IGKL+ + MSD Sbjct: 230 DGLTVMLFVGVNGVGKTTSIGKLAHEHSMSD 260 >gi|320529413|ref|ZP_08030501.1| flagellar biosynthesis protein FlhF [Selenomonas artemidis F0399] gi|320138379|gb|EFW30273.1| flagellar biosynthesis protein FlhF [Selenomonas artemidis F0399] Length = 472 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 120/253 (47%), Gaps = 21/253 (8%) Query: 49 LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF- 107 + D L R D V +++ EEL K D+++ + E++ L + K F Sbjct: 220 IRDALKRQD----VRKELREELAAKVPVADINLDSLSPRAKEVLAGYLSQVMK-FTDGLR 274 Query: 108 --SHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADR 164 +H V+ +G GVGKTT + K++ + LK L DT+R +A++QLK +A+ Sbjct: 275 LGAHGSRVVAFIGTTGVGKTTTLAKVAAHFVLEQNLKGALITADTYRISAVEQLKKYAEI 334 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + E+ AA L +A + ++K D +++DTAGR N M + +++ R Sbjct: 335 LG---LPVEVVYSAADLK-KAIARHRSK--DFILVDTAGRSQYNDFQMDELKQLLAAHPR 388 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 ++ H V+ ATT + ++ + +I TK D T G ++ ++ ++ Sbjct: 389 MEKHL------VVSATTKEQDAAEIMARFSACKPDRIIFTKTDETRSVGVVLNLLAGKEL 442 Query: 285 PVYFLGVGEGIND 297 P+ FL G+ + D Sbjct: 443 PLSFLSNGQSVPD 455 >gi|157813210|gb|ABV81350.1| putative signal recognition particle protein [Antheraea paukstadtorum] Length = 102 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%) Query: 261 LIMTKMDGTARGGG-LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG L + TH ++FL GE I+DLEPF K F + G D Sbjct: 12 VIITKLDGHAKGGGALSAVAATHSPIIFFLVTGEHIDDLEPFKTKPFINKLLGTGD 67 >gi|146282910|ref|YP_001173063.1| flagellar biosynthesis regulator FlhF [Pseudomonas stutzeri A1501] gi|145571115|gb|ABP80221.1| flagellar biosynthesis protein FlhF [Pseudomonas stutzeri A1501] Length = 430 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 83/190 (43%), Gaps = 20/190 (10%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWA---DRTSA 167 VI +VG GVGKTT + KL+ + + + LA+ D +R A +QLK D Sbjct: 212 VIALVGPAGVGKTTTLAKLAARYVLKYGAQSIALASMDNYRIGAQEQLKTLGRILDVPVL 271 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 SE S + LA A K+ V++IDTAG ++ L + + D Sbjct: 272 QLDPSEPLSKS--LASLARKR-------VILIDTAGLPASDPTLRMQLQALS------DK 316 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 VL AT+ L+ + G G I+TK+D G ++ + ++ +P+ Sbjct: 317 GVKSKNYLVLAATSQSQVLKAAWHNYRRCGLAGCILTKLDEAGSLGDVLGLTISQHLPIA 376 Query: 288 FLGVGEGIND 297 +L G I D Sbjct: 377 YLADGPRIPD 386 >gi|262303801|gb|ACY44493.1| signal recognition particle [Eurypauropus spinosus] Length = 101 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + P+ F+G GE I+D E F K F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATRSPIIFIGTGEHIDDFEQFKVKPFVSKLLGMGD 66 >gi|327481250|gb|AEA84560.1| flagellar biosynthesis regulator FlhF [Pseudomonas stutzeri DSM 4166] Length = 430 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 83/190 (43%), Gaps = 20/190 (10%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWA---DRTSA 167 VI +VG GVGKTT + KL+ + + + LA+ D +R A +QLK D Sbjct: 212 VIALVGPAGVGKTTTLAKLAARYVLKYGAQSIALASMDNYRIGAQEQLKTLGRILDVPVL 271 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 SE S + LA A K+ V++IDTAG ++ L + + D Sbjct: 272 QLDPSEPLSKS--LASLARKR-------VILIDTAGLPASDPTLRMQLQALS------DK 316 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 VL AT+ L+ + G G I+TK+D G ++ + ++ +P+ Sbjct: 317 GVKSKNYLVLAATSQSQVLKAAWHNYRRCGLAGCILTKLDEAGSLGDVLGLTISQHLPIA 376 Query: 288 FLGVGEGIND 297 +L G I D Sbjct: 377 YLADGPRIPD 386 >gi|119586297|gb|EAW65893.1| hCG2033479, isoform CRA_c [Homo sapiens] Length = 177 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 32/60 (53%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 >gi|34496479|ref|NP_900694.1| flagellar biosynthesis regulator FlhF [Chromobacterium violaceum ATCC 12472] gi|34102333|gb|AAQ58699.1| flagellar biosynthetic protein FlhF [Chromobacterium violaceum ATCC 12472] Length = 479 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 16/188 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD-F 169 + +VG GVGKTT + KL+ + M V L D++R A DQL+I+ F Sbjct: 263 IFALVGPTGVGKTTTVAKLAARATMRFGAQHVALITTDSYRIGAQDQLRIYGKILGVPVF 322 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 G LA + + ++ IDT G ++ ++A I M+R R Sbjct: 323 SIQNEGDLQLTLADLSNRH-------IVFIDTVGMGQRDARVLAQI-DMLRTAGR----- 369 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L +L A T + L V + G G I++K+D G + +++ +++ +Y++ Sbjct: 370 PIERLLLLAANTDGHTLEDVVKRYRGDGLAGCILSKIDEAVAQGPSLDVIIRNRLKLYYV 429 Query: 290 GVGEGIND 297 G+ + + Sbjct: 430 TNGQRVPE 437 >gi|299069776|emb|CBJ41055.1| putative flagellar biosynthetic protein flhF [Ralstonia solanacearum CMR15] Length = 615 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 65/282 (23%), Positives = 118/282 (41%), Gaps = 36/282 (12%) Query: 28 LKEGITDIISSR-----RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82 LK +TD +SS +L D VR L ++ + + RY D Q Sbjct: 306 LKSTLTDAMSSLASLGVKLGDPVRTRLFQTMLNAGFSAQLT----------RYVLDNMPQ 355 Query: 83 RVLYD-----VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--M 135 YD V + K L + P + V ++G GVGKTT KL+ + + Sbjct: 356 HGTYDSALDFVQRALEKNLTVV--PNENSLLDQGGVFALMGPTGVGKTTTTAKLAARFVL 413 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 +V L + D++R +QL+I+ + D + LA ++ Sbjct: 414 RHGASRVALLSTDSYRIGGHEQLRIYGKILGVSVHAVKDAQDLS-LALGDLREKH----- 467 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 V++IDT G + + + + +L + P L +L+AT+ L +V + Sbjct: 468 VVLIDTIGMSQRDR----AVSEQMAMLHAVGPSIKR--LLLLNATSNGKTLDEVVSAYRD 521 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 A G I+TK+D A G + ++ H++P++++ G+ + + Sbjct: 522 ANLAGCILTKIDEAASVGHAMDAMIRHRLPLHYVSYGQRVPE 563 >gi|262303823|gb|ACY44504.1| signal recognition particle [Loxothylacus texanus] Length = 101 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V P+ F+G GE I+DLE F K F + + G D Sbjct: 12 VIITKLDGHAKGGGALSAVAATSSPIIFIGTGEHIDDLETFRVKPFISKLLGMGD 66 >gi|262303789|gb|ACY44487.1| signal recognition particle [Eurytemora affinis] Length = 100 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +++TK+DG A+GGG + V K PV F+G GE I++LE F K F + + G D Sbjct: 12 VVITKLDGHAKGGGALSAVAATKSPVIFIGTGEHIDNLEMFEEKAFISKLLGMGD 66 >gi|297840121|ref|XP_002887942.1| hypothetical protein ARALYDRAFT_893071 [Arabidopsis lyrata subsp. lyrata] gi|297333783|gb|EFH64201.1| hypothetical protein ARALYDRAFT_893071 [Arabidopsis lyrata subsp. lyrata] Length = 189 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 32/52 (61%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 VIL+ G+ GVGKT V KL+ + G ML AGD +R A IDQL I ++ Sbjct: 125 VILLAGLQGVGKTMVCAKLACYLKKQGKSCMLIAGDVYRPATIDQLVILGEQ 176 >gi|90406804|ref|ZP_01214996.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3] gi|90312041|gb|EAS40134.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3] Length = 481 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 97/197 (49%), Gaps = 28/197 (14%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 I ++G GVGKTT I KL+ + M +V L DT+R A +QL + Sbjct: 272 AIALLGPTGVGKTTTIAKLAAQFAMKYGADQVALITTDTYRIGAHEQLATYGKIMG---- 327 Query: 171 CS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 CS + DA L+ + Q ++ +++IDTAG + IR+ ++LD Sbjct: 328 CSVRVAKDADELSTILY---QFREKRLVLIDTAGMGQRD----------IRLSEQLDTLM 374 Query: 230 PHSVLQ-----VLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 ++ + V+ +T+ + + + +E F + +G I+TK+D + G ++ +++ H Sbjct: 375 RNNSVNIKSYLVISSTSQRRIVEEALEHFKRIP-LSGCILTKIDESIGLGEVLSVMMQHA 433 Query: 284 IPVYFLGVGEGI-NDLE 299 +P+ ++ G+ + D+E Sbjct: 434 LPIAYMTTGQRVPEDIE 450 >gi|255636768|gb|ACU18718.1| unknown [Glycine max] Length = 175 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 13/158 (8%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVA-------QKIVE-ELLTKRYAKDVSVQRVLY 86 II + L+D + ++ L++SD+ + + IV E L + K +Q+ ++ Sbjct: 22 IIDEKVLNDCL-NDITRALLQSDVQFKLVRDMQTNIKNIVNLEDLAAGHNKRRIIQQAVF 80 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + EL K+L P KP + V++ VG+ G GKTT K + G K L Sbjct: 81 N--ELC-KILDP-GKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKYAFYHQKKGWKPALVC 136 Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 DTFR+ A DQLK A + F S + SD L ++ Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKLLWK 174 >gi|146307829|ref|YP_001188294.1| flagellar biosynthesis regulator FlhF [Pseudomonas mendocina ymp] gi|145576030|gb|ABP85562.1| GTP-binding signal recognition particle SRP54, G- domain protein [Pseudomonas mendocina ymp] Length = 437 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 19/212 (8%) Query: 88 VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLA 145 ++ L H + P +P VI +VG G+GKTT + KL+ + + +V L Sbjct: 199 LAHLAHAIKTPKVEPLEEG-----GVIALVGPAGMGKTTTLAKLAARYVLKYGAQQVALV 253 Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 + D+FR A +QLK + G +A K+V +++DTAG Sbjct: 254 SMDSFRIGAQEQLKTLGRILGVSVTQIDPGQSL----LQALTPLAKKRV--VLVDTAGLP 307 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265 N+ L + + + + VL AT+ L+ + G +G I+TK Sbjct: 308 GNDPALRLQLESLASARIKAKNYL------VLAATSQSQVLKAAYHSYKRCGLSGCILTK 361 Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 +D A G ++ + + +PV ++ G I D Sbjct: 362 LDEAASLGEVLGLAIGQHLPVAYVTDGPRIPD 393 >gi|262303859|gb|ACY44522.1| signal recognition particle [Stenochrus portoricensis] Length = 101 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + P+ F+G GE I+D E F K F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEQFKVKPFVSKLLGMGD 66 >gi|187918144|ref|YP_001883707.1| flagellar biosynthesis regulator FlhF [Borrelia hermsii DAH] gi|119860992|gb|AAX16787.1| flagellar biosynthesis protein FlhF [Borrelia hermsii DAH] Length = 393 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 29/195 (14%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSK----KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + + ++VG GVGKTT I KL+ D L + + D +R A Q++ + D Sbjct: 178 KKRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDI- 236 Query: 166 SADFVCSEIGSDAAALAYEAFKQ-----AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 +G A+ E+FK Q+K D+++IDT G+ + + +A + +++ Sbjct: 237 --------MGIPVKAI--ESFKDLKEEITQSKDFDLVLIDTIGKSPKDFMKLAEMKELLN 286 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPI 278 R D +V +TT ++ E+FH + +I TK+D T G LI + Sbjct: 287 ACGR-DAEFHLAV----SSTTKTADIK--EIFHQFSPFSYKTVIFTKLDETTCVGNLISL 339 Query: 279 VVTHKIPVYFLGVGE 293 + + V ++ G+ Sbjct: 340 IHEMRKEVSYITDGQ 354 >gi|17549611|ref|NP_522951.1| flagellar biosynthesis regulator FlhF [Ralstonia solanacearum GMI1000] gi|17431865|emb|CAD18543.1| probable flagellar biosynthetic protein flhf [Ralstonia solanacearum GMI1000] Length = 615 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 87/187 (46%), Gaps = 14/187 (7%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + + +V L + D++R +QL+I+ V Sbjct: 389 VFALMGPTGVGKTTTTAKLAARFVLRHGASRVALLSTDSYRIGGHEQLRIYGKILG---V 445 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 DA L+ ++ V++IDT G + + + + +L + P Sbjct: 446 TVHAVKDAQDLS---LALGDLREKHVVLIDTIGMSQRDR----AVSEQMAMLHAVGPSIK 498 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 L +L+AT+ L +V + A G I+TK+D A G + ++ H++P++++ Sbjct: 499 R--LLLLNATSNGKTLDEVVSAYRDANLAGCILTKIDEAASVGHAMDAMIRHRLPLHYVS 556 Query: 291 VGEGIND 297 G+ + + Sbjct: 557 YGQRVPE 563 >gi|300113618|ref|YP_003760193.1| flagellar biosynthetic protein FlhF [Nitrosococcus watsonii C-113] gi|299539555|gb|ADJ27872.1| flagellar biosynthetic protein FlhF [Nitrosococcus watsonii C-113] Length = 393 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 96/217 (44%), Gaps = 30/217 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDA-GL-KVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 +I +VG GVGKTT + KL+ + + GL V L D FR A +QL + + Sbjct: 176 IIALVGPTGVGKTTSVAKLAARFALCHGLHSVALVTTDCFRIGAQEQLHTYGRILG---I 232 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNNSILMAGIGKMIRVLKR 224 ++ D L E + +++ ++IDTAG L ++AG IR Sbjct: 233 PVKVAHDRQTL-QETLEYLADRRL--VLIDTAGMSQRDMHLTEQFSMLAGGTLAIRNYLV 289 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 L SVL + V F+ + G I+TK+D A GG++ + H + Sbjct: 290 LSAATQFSVLDEV-----------VRKFNRI-DLAGCILTKLDEAASLGGMVSTAIRHHL 337 Query: 285 PVYFLGVGEGI-NDLEPFVAKDFSAVITGCLDYGEEK 320 P+ ++ G+ + D P A++ +++ +Y EK Sbjct: 338 PLAYVCNGQRVPEDFAPACAQNVVHLLS---EYAHEK 371 >gi|119586298|gb|EAW65894.1| hCG2033479, isoform CRA_d [Homo sapiens] Length = 337 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 32/60 (53%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 >gi|119586299|gb|EAW65895.1| hCG2033479, isoform CRA_e [Homo sapiens] Length = 341 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 32/60 (53%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 >gi|119953069|ref|YP_945278.1| flagellar biosynthesis regulator FlhF [Borrelia turicatae 91E135] gi|119861840|gb|AAX17608.1| flagellar biosynthesis protein FlhF [Borrelia turicatae 91E135] Length = 393 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 29/195 (14%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSK----KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165 + + ++VG GVGKTT I KL+ D L + + D +R A Q++ + D Sbjct: 178 KKRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDI- 236 Query: 166 SADFVCSEIGSDAAALAYEAFKQ-----AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 +G A+ E+FK Q+K D+++IDT G+ + + +A + +++ Sbjct: 237 --------MGIPVKAI--ESFKDLKEEITQSKDFDLVLIDTIGKSPKDFMKLAEMKELLN 286 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPI 278 R D +V +TT ++ E+FH + +I TK+D T G LI + Sbjct: 287 ACGR-DAEFHLAV----SSTTKTADIK--EIFHQFSPFSYKTVIFTKLDETTCVGNLISL 339 Query: 279 VVTHKIPVYFLGVGE 293 + + V ++ G+ Sbjct: 340 IHEMRKEVSYVTDGQ 354 >gi|330904768|gb|EGH35340.1| cell division protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 49 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 28/38 (73%) Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 VMLAAGDTFR+AA++QL++W +R + G+D+A Sbjct: 12 VMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSA 49 >gi|88858093|ref|ZP_01132735.1| flagellar biosynthesis protein [Pseudoalteromonas tunicata D2] gi|88819710|gb|EAR29523.1| flagellar biosynthesis protein [Pseudoalteromonas tunicata D2] Length = 471 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 15/186 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V +VG GVGKTT + KL+ K+ L DT+R A +QL + Sbjct: 255 VFALVGPTGVGKTTTVAKLAALGAQKFGADKIALITTDTYRIGAYEQLATYGRIIGCPVK 314 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + ++ A + Y + +++IDTAG + L + +++ R+D + Sbjct: 315 QVKDANELAEMLY------HLRNKRLVLIDTAGMSQRDLRLTEQLNTLMKNA-RVDIRS- 366 Query: 231 HSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 VL AT L++ V+ F V +G I TK+D G +I I + +++P+ +L Sbjct: 367 ---YLVLSATAQHEVLQETVKHFKKV-HLSGCIFTKLDECLSLGEIISIAIQNRLPIGYL 422 Query: 290 GVGEGI 295 G+ + Sbjct: 423 TNGQRV 428 >gi|302792763|ref|XP_002978147.1| hypothetical protein SELMODRAFT_417824 [Selaginella moellendorffii] gi|300154168|gb|EFJ20804.1| hypothetical protein SELMODRAFT_417824 [Selaginella moellendorffii] Length = 175 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 8/130 (6%) Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 A DT R+ A D LK A + + SEI D +A E ++ K D++I+DT+GR Sbjct: 8 ACADTVRAGAFDPLKQNATKVK---IPSEI--DPVVIAQEGVRKFADAKHDLIILDTSGR 62 Query: 205 -LHNNSILMAGIGKMIRVLKRLDP--HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261 N L A +R+L P ++ V+D++ Q A Q F A + Sbjct: 63 HKQENEELAAARVFFLRILSICSRTLQNPDLIIFVMDSSIWQAANDQTLAFIESAKVGAV 122 Query: 262 IMTKMDGTAR 271 I+TKMDG A+ Sbjct: 123 IITKMDGHAK 132 >gi|207725000|ref|YP_002255397.1| cell division protein [Ralstonia solanacearum MolK2] gi|206590227|emb|CAQ37188.1| cell division protein [Ralstonia solanacearum MolK2] Length = 317 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 64/280 (22%), Positives = 118/280 (42%), Gaps = 36/280 (12%) Query: 28 LKEGITDIISSR-----RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82 LK +TD +SS +L D VR L ++ + + RY D Q Sbjct: 8 LKSTLTDAMSSLASLGVKLGDPVRTRLFQTMLNAGFSAQLT----------RYVLDNMPQ 57 Query: 83 RVLYD-----VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--M 135 YD V + K L + P + V ++G GVGKTT KL+ + + Sbjct: 58 HGTYDSALDFVQRALEKNLTVV--PDENSLLDQGGVFALMGPTGVGKTTTTAKLAARFVL 115 Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 +V L + D++R +QL+I+ V DA L+ ++ Sbjct: 116 RHGASRVALLSTDSYRIGGHEQLRIYGKILG---VTVHAVKDAQDLS---LALGDLREKH 169 Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 V++IDT G + + + + +L + P L +L++T+ L +V + Sbjct: 170 VVLIDTIGMSQRDR----AVSEQMAMLHAVGPSIKR--LLLLNSTSNGKTLDEVVSAYRD 223 Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 A G I+TK+D A G + +++ +++P++++ G+ + Sbjct: 224 ANLAGCILTKIDEAASVGHAMDVMIRNRLPLHYVSYGQRV 263 >gi|262303783|gb|ACY44484.1| signal recognition particle [Dinothrombium pandorae] Length = 101 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 33/55 (60%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +++TK+DG A+GGG + V P+ F+G GE I+D E F K F + + G D Sbjct: 12 VVVTKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDFEQFKVKPFVSKLLGMGD 66 >gi|317407054|gb|EFV87072.1| flagellar biosynthesis protein [Achromobacter xylosoxidans C54] Length = 592 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 62/265 (23%), Positives = 114/265 (43%), Gaps = 37/265 (13%) Query: 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105 RE L RS + + K+V L+ + A + + +EL+ + + S+ Sbjct: 42 REPAGAALFRSLLDAGFSTKLVRTLVERMPAGATPEAALAWARNELVTHLPVLGSE---- 97 Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D V +VG GVGKTT + KL+ + + +V + D FR A++QL+I+ Sbjct: 98 DEFLGGGVYALVGPTGVGKTTTLAKLAARCVAREGREQVAMLTTDNFRIGALEQLQIYGR 157 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNNSILMAGIGK 217 V + DA L + K +++IDT G ++ + ++ GK Sbjct: 158 LMG---VPAHSVRDAGELRRILGELGNRK---IVLIDTTGISQRDRQVAEQASMLCNAGK 211 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG-----TTGLIMTKMDGTARG 272 +R L VL+A + + L +V HA G I+TK+D +R Sbjct: 212 PVRRLL------------VLNAASQGDTLDEVA--HAYRNGVGEDVAGCIITKLDEASRL 257 Query: 273 GGLIPIVVTHKIPVYFLGVGEGIND 297 G + + H++P+++ +G+ + + Sbjct: 258 GAALDTAIRHRLPIHYSSIGQKVPE 282 >gi|207108795|ref|ZP_03242957.1| cell division protein (ftsY) [Helicobacter pylori HPKX_438_CA4C1] Length = 63 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 34/47 (72%) Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 G+IMTK+DGT++GG ++ ++ K+P+ +LG+GE +DL F + F Sbjct: 5 GVIMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERF 51 >gi|209964118|ref|YP_002297033.1| flagellar GTP-binding protein FlhF [Rhodospirillum centenum SW] gi|209957584|gb|ACI98220.1| flagellar GTP-binding protein FlhF [Rhodospirillum centenum SW] Length = 330 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 60/234 (25%), Positives = 105/234 (44%), Gaps = 27/234 (11%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104 V++++ D+L+R + ++ ++++ + D+S + L +S + + P Sbjct: 69 VQDQVSDVLLRHGVPQELSAQMLDSI------ADLSARDPLTALSAALDAVFA--FSPLP 120 Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 + RP I++VG G GKT I KL + + G V + + DT R+ I+QL+ + Sbjct: 121 ETRAPRP--IMLVGPPGCGKTLTIAKLCARSALRGRPVGVISTDTVRAGGIEQLQAFTRV 178 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + E D ALA Q + ++ ++ID+AGR N A + + L Sbjct: 179 LKLRLITVE---DPPALAGALEVQ---RGIEQVVIDSAGR---NPYSAADMRDLREYLAA 229 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLI 276 D V VL G +A+ E A A G T L+ T++D R G L+ Sbjct: 230 AD------VDPVLVMPAGLDAVEAAETARAFADVGVTRLLPTRLDLARRLGSLL 277 >gi|307248307|ref|ZP_07530332.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250534|ref|ZP_07532478.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307261759|ref|ZP_07543425.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306855177|gb|EFM87355.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857427|gb|EFM89539.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306868577|gb|EFN00388.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 548 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 97/225 (43%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG + S K + D ++S R E +L I G Sbjct: 257 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E LTK Y +R L D N FS + ++ ++G Sbjct: 312 LGDKVIEVSNLTKSYG-----ERTLID----------------NLSFSIPKGAIVGIIGA 350 Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS- 172 NG GK+T+ LS ++ D+G VM LA+ D FR + D+ +W + ++ + + Sbjct: 351 NGAGKSTLFRMLSGQEQPDSGSIVMGETVVLASVDQFRDSMDDKKTVWEEVSNGQDILTI 410 Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 411 GNFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 455 >gi|329904714|ref|ZP_08273915.1| Flagellar biosynthesis protein FlhF [Oxalobacteraceae bacterium IMCC9480] gi|327547858|gb|EGF32616.1| Flagellar biosynthesis protein FlhF [Oxalobacteraceae bacterium IMCC9480] Length = 443 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 14/187 (7%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V +VG GVGKTT KL+ + M K+ L D +R +QL+I+ + V Sbjct: 216 VFALVGPTGVGKTTTTAKLAARCVMRHGPGKLALIPTDGYRIGGYEQLRIYG-KILGVMV 274 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 S +A + K ++IDT G + ++ + + R+ Sbjct: 275 HSVKDESDLRIALDELKNKH-----TVLIDTVGVSQRDHMVTEQVAMLQGAGSRVKR--- 326 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 L L+AT+ L +V + +G G +MTK+D A G ++ +V+ K+ ++++ Sbjct: 327 ---LLCLNATSTGETLNEVVRAYQGSGLAGCVMTKLDEAATIGSVLDVVIRQKLNLFYVA 383 Query: 291 VGEGIND 297 G+ + + Sbjct: 384 NGQRVPE 390 >gi|262303815|gb|ACY44500.1| signal recognition particle [Libinia emarginata] Length = 101 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V + P+ F+G GE I++ E F K F + + G D Sbjct: 12 VIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDNFEEFKTKPFISKLLGMGD 66 >gi|52425295|ref|YP_088432.1| putative ABC transporter ATP-binding protein [Mannheimia succiniciproducens MBEL55E] gi|52307347|gb|AAU37847.1| Uup protein [Mannheimia succiniciproducens MBEL55E] Length = 560 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 94/224 (41%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG + S ++ S R E +L I G Sbjct: 269 ARQKSIEKELEWVRQNPKGRQAKSKARMARFEELNSGEYQK---RNETNELFIPP--GPR 323 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E E LTK Y +R L D + S P + ++ ++G N Sbjct: 324 LGDKVLEVEHLTKSYG-----ERTLIDD--------LSFSIP-------KGAIVGIIGPN 363 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS K+ D+G V+LA+ D FR A D+ +W + ++ + + Sbjct: 364 GAGKSTLFRMLSGKEQPDSGSITLGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 423 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 424 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 467 >gi|32035045|ref|ZP_00135111.1| COG0488: ATPase components of ABC transporters with duplicated ATPase domains [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208749|ref|YP_001053974.1| putative ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae L20] gi|165976702|ref|YP_001652295.1| putative ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303252088|ref|ZP_07338257.1| putative ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|126097541|gb|ABN74369.1| ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876803|gb|ABY69851.1| ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302649070|gb|EFL79257.1| putative ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 556 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 97/225 (43%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG + S K + D ++S R E +L I G Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E LTK Y +R L D N FS + ++ ++G Sbjct: 320 LGDKVIEVSNLTKSYG-----ERTLID----------------NLSFSIPKGAIVGIIGA 358 Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS- 172 NG GK+T+ LS ++ D+G VM LA+ D FR + D+ +W + ++ + + Sbjct: 359 NGAGKSTLFRMLSGQEQPDSGSIVMGETVVLASVDQFRDSMDDKKTVWEEVSNGQDILTI 418 Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 419 GNFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463 >gi|255564956|ref|XP_002523471.1| signal recognition particle 54 kD protein, putative [Ricinus communis] gi|223537299|gb|EEF38930.1| signal recognition particle 54 kD protein, putative [Ricinus communis] Length = 194 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 41/78 (52%) Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 + + Q A Q + F +++TKMDG A+GG + V V F+G GE +++ Sbjct: 40 EKSISQAAFDQAQAFKQRVAVGAMVITKMDGHAKGGVALSAVAATNSLVIFIGTGEHMSN 99 Query: 298 LEPFVAKDFSAVITGCLD 315 + F A+ F ++++G D Sbjct: 100 FQQFDAQSFVSLLSGMGD 117 >gi|145298361|ref|YP_001141202.1| flagellar biosynthesis protein FlhF [Aeromonas salmonicida subsp. salmonicida A449] gi|142851133|gb|ABO89454.1| flagellar biosynthesis protein FlhF [Aeromonas salmonicida subsp. salmonicida A449] Length = 472 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 58/254 (22%), Positives = 118/254 (46%), Gaps = 32/254 (12%) Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK-- 134 +D+S+ + + ++E++ L K D + + ++G GVGKTT I KL+ + Sbjct: 223 EDMSIHQAMAQLAEVLTAQL----KISEDDILRQGGAVALLGPTGVGKTTTIAKLAARFA 278 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 M +V L D +R A +QL+ + DA LA + Q + Sbjct: 279 MKYGAEQVALITTDNYRIGAHEQLQTYGRIMGCPVRQVR---DAEELANALY---QFRHR 332 Query: 195 DVLIIDTAGRLHNNSILMAGIGKM-IRVLKRLDPHAPHSVLQ-----VLDATTGQNALRQ 248 +++IDTAG +G+ IR+ ++LD ++ ++ V+ AT+ + +++ Sbjct: 333 RLVLIDTAG-----------VGQRDIRLTEQLDTLVKNAKVRIRSYLVMSATSQRRVMQE 381 Query: 249 -VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDF 306 V+ F + +G I+TK+D + G +I + + + +P+ ++ G+ + D++ A Sbjct: 382 AVDHFRRIP-LSGCILTKLDESLNLGEVINVCIQNALPISYITDGQRVPEDIQVANAAQL 440 Query: 307 SAVITGCLDYGEEK 320 G L+ E+ Sbjct: 441 VGAAMGSLEQETEE 454 >gi|88704272|ref|ZP_01101986.1| flagellar biosynthetic protein FlhF [Congregibacter litoralis KT71] gi|88701323|gb|EAQ98428.1| flagellar biosynthetic protein FlhF [Congregibacter litoralis KT71] Length = 360 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 95/192 (49%), Gaps = 18/192 (9%) Query: 106 DFSHRP-HVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVM-LAAGDTFRSAAIDQLKIWA 162 D P ++ V G GVGKT+ + +L+ + + G +++ L D +R A +QL +A Sbjct: 145 DLEQLPGNITAVYGGTGVGKTSTVARLAGRDIQRLGPEMVGLITLDNYRIGAQEQLASFA 204 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 D + SD L+ A ++ Q +++ IDTAG +++ L G +IR L Sbjct: 205 DALGIPLFSA---SDRHTLSL-ALRKMQGRRI---YIDTAGMSQHDARLQ-GQYALIREL 256 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 ++ P L VL A+ + R + A +G I++K+D GG++ ++++ Sbjct: 257 RK-----PVRHLMVLAASAQPSQCRALAANFAPHTLSGAIISKVDEAQSLGGVLDVLISS 311 Query: 283 KIPVYFLGVGEG 294 ++PV LG +G Sbjct: 312 QLPV--LGYSDG 321 >gi|330882866|gb|EGH17015.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. glycinea str. race 4] Length = 386 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 22/179 (12%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG G+GKTT + KL+ + + + L + D+FR A +QLK + Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226 + G +A + K+V ++IDTAG ++ L + G+ I+ L Sbjct: 284 HVDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 336 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 VL T+ + L + G G I+TK+D TA G ++ + ++H++P Sbjct: 337 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELP 386 >gi|116626503|ref|YP_828659.1| GTP-binding signal recognition particle [Candidatus Solibacter usitatus Ellin6076] gi|116229665|gb|ABJ88374.1| GTP-binding signal recognition particle SRP54, G- domain [Candidatus Solibacter usitatus Ellin6076] Length = 389 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 70/271 (25%), Positives = 117/271 (43%), Gaps = 30/271 (11%) Query: 44 GVREELEDL---LIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSELIHKML 96 GV +++ D L +D+ +A+++V+ L +R + + QR+ D + + Sbjct: 111 GVSQDVSDAYAALTAADVSAELAREVVQAAGNRLNGQRAPVNRTPQRI--DGAAFERALA 168 Query: 97 MPLSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTF 150 S F D + PH+ +VG G GKTT + KL+ A + V+L + DT+ Sbjct: 169 EEFSSRFTVDATLGRGPAEPHIAALVGPPGSGKTTTLVKLAIHFGLAARRPVLLLSMDTY 228 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 R AA +QL+ +A F E + A +A ++ + K ++++IDT G Sbjct: 229 RVAAAEQLRSYAAILGVGFQVLETVNSLA----QAIEENRGK--ELILIDTPGLGLGELE 282 Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL-RQVEMFHAVAGTTGLIMTKMDGT 269 A G + +D H VL A+ L R V+ F V L+ T++D T Sbjct: 283 DSASFGHFLSTRSDIDTHL------VLSASMKPADLSRMVDAF-GVLRPQHLLFTRLDET 335 Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGI-NDLE 299 G + P+ F G+ I DLE Sbjct: 336 GSYGQIFSEAARTGKPLSFFTHGQRIPEDLE 366 >gi|307824494|ref|ZP_07654719.1| flagellar biosynthetic protein FlhF [Methylobacter tundripaludum SV96] gi|307734478|gb|EFO05330.1| flagellar biosynthetic protein FlhF [Methylobacter tundripaludum SV96] Length = 475 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 65/270 (24%), Positives = 115/270 (42%), Gaps = 25/270 (9%) Query: 51 DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110 DLL R G+++++K+ ++ R+ + V EL+ K+L P++ D Sbjct: 207 DLLQRL-AGMSISRKLSVKI-ANRFTNHTDPELVFSQAQELLAKVL-PVA---GDDLLQH 260 Query: 111 PHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + +VG GVGKTT I KL+ K + +V L D +R A +QL + Sbjct: 261 GGIAALVGPTGVGKTTTIAKLAAKFILKHGPRQVALITTDNYRIGAHEQLNTYGRILD-- 318 Query: 169 FVCSEIGSDAAALAY--EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 V + S AA L F + +++IDTAG + L+ I + + + Sbjct: 319 -VPVRVASSAAELRNLINGFSDKR-----LILIDTAGMSQRDMKLVEQINTLQQSGIDIK 372 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 + V+ A T A+ ++ V I+TK+D A G + ++ + +P+ Sbjct: 373 SYL------VMSAATEYKAMNEIIKAFQVFEPQASILTKLDEAATIGSAVSSIIENNLPL 426 Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVITGCLD 315 F+ G+ + D+ A+ A LD Sbjct: 427 SFIADGQQVPEDMHSPCARTLIAQCVAELD 456 >gi|315634002|ref|ZP_07889291.1| ABC superfamily ATP binding cassette transporter, ABC protein [Aggregatibacter segnis ATCC 33393] gi|315477252|gb|EFU67995.1| ABC superfamily ATP binding cassette transporter, ABC protein [Aggregatibacter segnis ATCC 33393] Length = 556 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 94/224 (41%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG + S ++ S R E +L I G Sbjct: 265 ARQKSIEKELEWVRQNPKGRQAKSKARMARFEELNSGEYQK---RNETNELFIPP--GPR 319 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E + L+K Y R L D + S P + ++ ++G N Sbjct: 320 LGDKVIEVQHLSKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS K+ D+G V+LA+ D FR A D+ +W + ++ + + Sbjct: 360 GAGKSTLFRMLSGKEQPDSGSITLGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L AG Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQAG 463 >gi|251792937|ref|YP_003007663.1| putative ABC transporter ATP-binding protein [Aggregatibacter aphrophilus NJ8700] gi|247534330|gb|ACS97576.1| ABC transporter domain protein [Aggregatibacter aphrophilus NJ8700] Length = 556 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 94/224 (41%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG + S ++ S R E +L I G Sbjct: 265 ARQKSIEKELEWVRQNPKGRQAKSKARMARFEELNSGEYQK---RNETNELFIPP--GPR 319 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E + L+K Y R L D + S P + ++ ++G N Sbjct: 320 LGDKVIEVQHLSKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359 Query: 121 GVGKTTVIGKL-SKKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ L SK+ D+G V+LA+ D FR A D+ +W + ++ + + Sbjct: 360 GAGKSTLFRMLSSKEQPDSGTITLGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L AG Sbjct: 420 NFEIPSRAYVGRFNFKGIDQQKRVGELSGGERGRLHLAKLLQAG 463 >gi|77165622|ref|YP_344147.1| flagellar biosynthesis regulator FlhF [Nitrosococcus oceani ATCC 19707] gi|254434668|ref|ZP_05048176.1| SRP54-type protein, GTPase domain [Nitrosococcus oceani AFC27] gi|76883936|gb|ABA58617.1| GTP-binding signal recognition particle SRP54 [Nitrosococcus oceani ATCC 19707] gi|207091001|gb|EDZ68272.1| SRP54-type protein, GTPase domain [Nitrosococcus oceani AFC27] Length = 393 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 68/287 (23%), Positives = 123/287 (42%), Gaps = 37/287 (12%) Query: 44 GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103 G R + L+R +G+ +A + ++L A V+ + + + + K L L Sbjct: 112 GRRNPSKAQLLRRLMGLDLASDLCQQL-----AAQVNNEGAPHQIWQQALKGLTDLIPIA 166 Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GL-KVMLAAGDTFRSAAIDQLKIW 161 N D +I +VG GVGKTT + KL+ + + GL V L D FR A +QL + Sbjct: 167 NDDILSDGGIIALVGPTGVGKTTSVAKLAARFALCHGLHSVALVTTDCFRIGAQEQLHTY 226 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN-------SILMAG 214 + ++ D L E + +++ ++IDTAG + ++L G Sbjct: 227 GRILG---IPVKVARDQQTL-QETLEYLADRRL--VLIDTAGMSQRDMHLTEQFTMLAEG 280 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 ++ L VL A T + L +V G I+TK+D A GG Sbjct: 281 TLEIRNYL-------------VLSAATQFSVLDEVVRKFNRIDLAGCILTKLDEAASLGG 327 Query: 275 LIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITGCLDYGEEK 320 ++ + H +P+ ++ G+ + D P A++ +++ +Y E+ Sbjct: 328 MVSAAIRHHLPLAYVCDGQRVPEDFSPARAQNIVHLLS---EYAHEQ 371 >gi|262303851|gb|ACY44518.1| signal recognition particle [Prokoenenia wheeleri] Length = 101 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 33/55 (60%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V P+ F+G GE I+D E F K F + + G D Sbjct: 12 VIVTKLDGHAKGGGALSAVAATHSPIIFIGTGEHIDDFELFKVKPFVSKLLGMGD 66 >gi|301169992|emb|CBW29596.1| fused predicted transporter subunits of ABC superfamily: ATP-binding components [Haemophilus influenzae 10810] Length = 556 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG + S K + D ++S R E +L I G Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E + LTK Y R L D + S P + ++ ++G N Sbjct: 320 LGDKVIEVQNLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G +M LA+ D FR A D+ +W + ++ + + Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSVIMGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463 >gi|240948321|ref|ZP_04752707.1| putative ABC transporter ATP-binding protein [Actinobacillus minor NM305] gi|240297360|gb|EER47901.1| putative ABC transporter ATP-binding protein [Actinobacillus minor NM305] Length = 556 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 94/224 (41%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG + S ++ S R E +L I G Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKSKARMARFEELNSGEYQK---RNETNELFIPP--GPR 319 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E LTK Y R L D + S P + ++ ++G N Sbjct: 320 LGDKVIEVSNLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G VM LA+ D FR A D+ +W + ++ + + Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSIVMGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L AG Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQAG 463 >gi|311992311|gb|ADQ26729.1| master regulator for class II operons [Aeromonas hydrophila] Length = 473 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 57/254 (22%), Positives = 118/254 (46%), Gaps = 32/254 (12%) Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK-- 134 +D+S+ + + ++E++ L K + + + ++G GVGKTT I KL+ + Sbjct: 224 EDMSIHQAMAQLAEVLTAQL----KISEDEILRQGGAVALLGPTGVGKTTTIAKLAARFA 279 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 M +V L D +R A +QL+ + DA LA + Q + Sbjct: 280 MKYGAEQVALITTDNYRIGAHEQLQTYGRIMGCPVRQVR---DAEELANALY---QFRHR 333 Query: 195 DVLIIDTAGRLHNNSILMAGIGKM-IRVLKRLDPHAPHSVLQ-----VLDATTGQNALRQ 248 +++IDTAG +G+ IR+ ++LD ++ ++ V+ AT+ + +++ Sbjct: 334 RLVLIDTAG-----------VGQRDIRLTEQLDTLVKNAKVRIRSYLVMSATSQRRVMQE 382 Query: 249 -VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDF 306 V+ F + +G I+TK+D + G +I + + + +P+ ++ G+ + D++ A Sbjct: 383 AVDHFRRIP-LSGCILTKLDESLNLGEVINVCIQNALPISYITDGQRVPEDIQVANAAQL 441 Query: 307 SAVITGCLDYGEEK 320 G L+ E+ Sbjct: 442 VGAAMGSLERETEE 455 >gi|117618453|ref|YP_855919.1| flagellar biosynthesis protein FlhF [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559860|gb|ABK36808.1| flagellar biosynthesis protein FlhF [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 473 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 57/254 (22%), Positives = 118/254 (46%), Gaps = 32/254 (12%) Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK-- 134 +D+S+ + + ++E++ L K + + + ++G GVGKTT I KL+ + Sbjct: 224 EDMSIHQAMAQLAEVLAAQL----KISEDEILRQGGAVALLGPTGVGKTTTIAKLAARFA 279 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 M +V L D +R A +QL+ + DA LA + Q + Sbjct: 280 MKYGAEQVALITTDNYRIGAHEQLQTYGRIMGCPVRQVR---DAEELANALY---QFRHR 333 Query: 195 DVLIIDTAGRLHNNSILMAGIGKM-IRVLKRLDPHAPHSVLQ-----VLDATTGQNALRQ 248 +++IDTAG +G+ IR+ ++LD ++ ++ V+ AT+ + +++ Sbjct: 334 RLVLIDTAG-----------VGQRDIRLTEQLDTLVKNAKVRIRSYLVMSATSQRRVMQE 382 Query: 249 -VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDF 306 V+ F + +G I+TK+D + G +I + + + +P+ ++ G+ + D++ A Sbjct: 383 AVDHFRRIP-LSGCILTKLDESLNLGEVINVCIQNALPISYITDGQRVPEDIQVANAAQL 441 Query: 307 SAVITGCLDYGEEK 320 G L+ E+ Sbjct: 442 VGAAMGSLERETEE 455 >gi|152989657|ref|YP_001349228.1| flagellar biosynthesis regulator FlhF [Pseudomonas aeruginosa PA7] gi|150964815|gb|ABR86840.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa PA7] Length = 429 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 16/188 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V+ +VG G GKTT + K++ + + + L + D++R A +Q+K + Sbjct: 211 VLALVGPAGAGKTTTLAKMAARYVLKYGAQSLALVSMDSYRIGAQEQIKTLGRILNVPVT 270 Query: 171 CSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G S ALA A K+ +L+IDTAG ++ L + + P Sbjct: 271 LVDPGQSLIQALAPLARKR-------MLLIDTAGLPASDPALRMQLEALA------SPSL 317 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 V+ T+ LR + G G IMTK+D G + + + ++PV +L Sbjct: 318 NVKNYLVMATTSQSQVLRSAYQTYRHCGLAGCIMTKLDEAGSLGESMALAIAQRLPVAYL 377 Query: 290 GVGEGIND 297 G I D Sbjct: 378 ADGPRIPD 385 >gi|167856376|ref|ZP_02479103.1| putative ABC transporter ATP-binding component [Haemophilus parasuis 29755] gi|219871535|ref|YP_002475910.1| putative ABC transporter ATP-binding protein [Haemophilus parasuis SH0165] gi|167852514|gb|EDS23801.1| putative ABC transporter ATP-binding component [Haemophilus parasuis 29755] gi|219691739|gb|ACL32962.1| putative ABC transporter ATP-binding protein [Haemophilus parasuis SH0165] Length = 556 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 94/224 (41%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG + S ++ S R E +L I G Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKSKARMARFEELNSGEYQK---RNETNELFIPP--GPR 319 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E LTK Y R L D + S P + ++ ++G N Sbjct: 320 LGDKVIEVSNLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G VM LA+ D FR A D+ +W + ++ + + Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSIVMGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L AG Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQAG 463 >gi|260914236|ref|ZP_05920709.1| ABC superfamily ATP binding cassette transporter, ABC protein [Pasteurella dagmatis ATCC 43325] gi|260631869|gb|EEX50047.1| ABC superfamily ATP binding cassette transporter, ABC protein [Pasteurella dagmatis ATCC 43325] Length = 548 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 93/225 (41%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG + S ++ S R E +L I G Sbjct: 257 ARQKSIEKELEWVRQNPKGRQAKSKARMARFEELNSGEYQK---RNETNELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E + LTK Y R L D N FS + ++ ++G Sbjct: 312 LGDKVIEVQGLTKSYG-----DRTLID----------------NLSFSIPKGAIVGIIGP 350 Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172 NG GK+T+ LS ++ DAG V+LA+ D FR A D+ +W + ++ + Sbjct: 351 NGAGKSTLFRILSGQEKPDAGTVTLGDTVVLASVDQFRDAMDDKKTVWEEVSNGQDILRI 410 Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L AG Sbjct: 411 GNFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQAG 455 >gi|119476302|ref|ZP_01616653.1| flagellar biosynthesis protein [marine gamma proteobacterium HTCC2143] gi|119450166|gb|EAW31401.1| flagellar biosynthesis protein [marine gamma proteobacterium HTCC2143] Length = 515 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 14/185 (7%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V VG G GKTT IGKL+ + + + V L DT R AA +QL+ + R V Sbjct: 294 VFAFVGPTGAGKTTTIGKLATRYVLENGAENVALVTTDTMRIAAHEQLRTFG-RILKVPV 352 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 C +++ + + +++IDTAG + L + + + + R+ Sbjct: 353 CIVDKNNSLDRVLHSLRHKS-----LVLIDTAGLNRQDPKLQSQLSSLNELGDRV----- 402 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 S+L V+ T+ + +R + ++TK+D T GG + +++ + V + Sbjct: 403 QSIL-VIPTTSQPDVVRSAYHTYKTDNMNLCVLTKLDETMSLGGALTVIIDKSLSVAYST 461 Query: 291 VGEGI 295 G+ I Sbjct: 462 DGQAI 466 >gi|119775417|ref|YP_928157.1| flagellar biosynthesis regulator FlhF [Shewanella amazonensis SB2B] gi|119767917|gb|ABM00488.1| flagellar biosynthetic protein FlhF [Shewanella amazonensis SB2B] Length = 463 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 55/253 (21%), Positives = 114/253 (45%), Gaps = 29/253 (11%) Query: 55 RSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHR 110 R+D +G + +++E + A ++ Y+ +EL+ + L+ + D R Sbjct: 186 RTDPVGAMLETRLLEAEFSPAVAAKLAGLSQHYNPAELVKALPQSLANMLDNQGDDIVRR 245 Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 V+ VG GVGKTT I K++ + + +V L D +R A +QL + Sbjct: 246 GGVVAFVGPTGVGKTTSIAKIAARFAAHHGADQVALITTDHYRIGAFEQLATYGKIMGCP 305 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + ++ + Y Q + +++IDTAG + +R++++LD Sbjct: 306 VKQAHDLNELQQILY------QLRNRKLVLIDTAGMGQRD----------MRLVEQLDNL 349 Query: 229 APHSVLQ-----VLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 +S L VL AT+ + L+ V+ F + +G ++TK+D + G + +++ Sbjct: 350 TANSALPIRSYLVLSATSQRRVLQDAVKHFQRIP-LSGAVLTKLDESVSLAGALSVLIQS 408 Query: 283 KIPVYFLGVGEGI 295 +P+ ++ G+ + Sbjct: 409 GLPLSYVTDGQRV 421 >gi|330828814|ref|YP_004391766.1| flagellar biosynthesis protein FlhF [Aeromonas veronii B565] gi|328803950|gb|AEB49149.1| Flagellar biosynthesis protein FlhF [Aeromonas veronii B565] Length = 474 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 57/254 (22%), Positives = 118/254 (46%), Gaps = 32/254 (12%) Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK-- 134 +D+S+ + + ++E++ L K + + + ++G GVGKTT I KL+ + Sbjct: 225 EDMSIHQAMAQLAEVLTAQL----KISEDEIMRQGGAVALLGPTGVGKTTTIAKLAARFA 280 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 M +V L D +R A +QL+ + DA LA + Q + Sbjct: 281 MKYGAEQVALITTDNYRIGAHEQLQTYGRIMGCPVRQVR---DAEELANALY---QFRHR 334 Query: 195 DVLIIDTAGRLHNNSILMAGIGKM-IRVLKRLDPHAPHSVLQ-----VLDATTGQNALRQ 248 +++IDTAG +G+ IR+ ++LD ++ ++ V+ AT+ + +++ Sbjct: 335 RLVLIDTAG-----------VGQRDIRLTEQLDTLVKNAKVRIRSYLVMSATSQRRVMQE 383 Query: 249 -VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDF 306 V+ F + +G I+TK+D + G +I + + + +P+ ++ G+ + D++ A Sbjct: 384 AVDHFRRIP-LSGCILTKLDESLNLGEVINVCIQNSLPISYITDGQRVPEDIQVANAAQL 442 Query: 307 SAVITGCLDYGEEK 320 G L+ E+ Sbjct: 443 VGAAMGSLERETEE 456 >gi|147678406|ref|YP_001212621.1| flagellar biosynthesis regulator FlhF [Pelotomaculum thermopropionicum SI] gi|146274503|dbj|BAF60252.1| flagellar GTP-binding protein [Pelotomaculum thermopropionicum SI] Length = 415 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 24/243 (9%) Query: 62 VAQKIVEELLT-----KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116 V + IVE LL+ + D S +R +++ + + +L +P ++ Sbjct: 164 VQENIVEHLLSVAGSGGNLSGDGS-RRFFFNLQKRVIDLLETAYRP-----GENARILTF 217 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 VG G+GKTT + KL+ + S K + + A +T+R A+R A I Sbjct: 218 VGPAGMGKTTTLTKLAARFSLYDRKKIAVIAVNTYRIGG------EAERLLAYGNLLGIP 271 Query: 176 SDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 + E K ++ D ++IDT GR ++ + + + V+K PH + Sbjct: 272 VEVVMTPLELAKVLESHTDKDYILIDTNGRSARSTGQLLELKGFLDVVKE-----PHDIF 326 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VL + L ++ G T LI TK+D T G ++ +V PV +L G+ Sbjct: 327 LVLSSAAKNRDLSRIAWEFQKVGYTKLIFTKVDETETHGSILNLVCALGAPVAYLADGQE 386 Query: 295 IND 297 I D Sbjct: 387 IPD 389 >gi|82702440|ref|YP_412006.1| flagellar biosynthesis regulator FlhF [Nitrosospira multiformis ATCC 25196] gi|82410505|gb|ABB74614.1| GTP-binding signal recognition particle SRP54, G-domain [Nitrosospira multiformis ATCC 25196] Length = 570 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 27/196 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V +VG GVGKTT KL+ + + KV L D++R +QL+I+ Sbjct: 334 VYALVGPTGVGKTTTTAKLAARCVVRHGASKVALLTTDSYRIGGHEQLRIYGKILGVSIH 393 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI------LMAGIGKMIRVLKR 224 D A + E + +++IDT G + + +++G G I+ L Sbjct: 394 AVRDTQDLALVLNEL------RGKHIVLIDTVGVGQRDQMVAEQVAMLSGCGSEIKRL-- 445 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 +L+A + + L +V + G G I++K+D G + I + H + Sbjct: 446 ----------LLLNAASSWHTLDEVAEAYWGDGLAGAIISKLDEAVVTGCALDIAMRHNL 495 Query: 285 PVYFLGVGEGI-NDLE 299 P+Y++ G+ + D+E Sbjct: 496 PLYYVANGQRVPEDIE 511 >gi|223042148|ref|ZP_03612319.1| ABC transporter ATP-binding protein [Actinobacillus minor 202] gi|223017087|gb|EEF15528.1| ABC transporter ATP-binding protein [Actinobacillus minor 202] Length = 556 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 95/224 (42%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG + S ++ S R E +L I G Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKSKARMARFEELNSGEYQK---RNETNELFIPP--GPR 319 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E LTK Y + ++ D+S I K ++ ++G N Sbjct: 320 LGDKVIEVSNLTKSYGD----RTLIDDLSFTIPKGA----------------IVGIIGAN 359 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G VM LA+ D FR A D+ +W + ++ + + Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSIVMGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L AG Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQAG 463 >gi|15602290|ref|NP_245362.1| putative ABC transporter ATP-binding protein [Pasteurella multocida subsp. multocida str. Pm70] gi|12720677|gb|AAK02509.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 556 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 95/228 (41%), Gaps = 44/228 (19%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGV---REELEDLLIRSDI 58 + QK + L W+R+ KG + S + L++G R E +L I Sbjct: 265 ARQKSIEKELEWVRQNPKGRQAKSK------ARMARFEELNNGEYQKRNETNELFIPP-- 316 Query: 59 GVAVAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILV 116 G + K++E + LTK Y R L D N FS + ++ + Sbjct: 317 GPRLGDKVIEVQNLTKTYG-----DRTLID----------------NLSFSIPKGAIVGI 355 Query: 117 VGVNGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 +G NG GK+T+ LS ++ D+G V+LA+ D FR A D+ +W + ++ + Sbjct: 356 IGPNGAGKSTLFRMLSGQEQPDSGTITLGETVVLASVDQFRDAMDDKKTVWEEVSNGQDI 415 Query: 171 CS----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L AG Sbjct: 416 LRIGNFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQAG 463 >gi|325578224|ref|ZP_08148359.1| ABC superfamily ATP binding cassette transporter, ABC protein [Haemophilus parainfluenzae ATCC 33392] gi|325159960|gb|EGC72089.1| ABC superfamily ATP binding cassette transporter, ABC protein [Haemophilus parainfluenzae ATCC 33392] Length = 556 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 97/225 (43%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG + S K + D ++S R E +L I G Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E + LTK Y R L D N FS + ++ ++G Sbjct: 320 LGDKVIEVQNLTKSYG-----DRTLID----------------NLSFSIPKGAIVGIIGP 358 Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172 NG GK+T+ LS ++ D+G V+LA+ D FR + D+ +W + ++ V + Sbjct: 359 NGAGKSTLFRMLSGQEQPDSGSITMGETVVLASVDQFRDSMDDKKTVWEEVSNGQDVLTI 418 Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 419 GNFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463 >gi|307263947|ref|ZP_07545550.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306870709|gb|EFN02450.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 548 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG + S K + D ++S R E +L I G Sbjct: 257 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E LTK Y +R L D + S P + ++ ++G N Sbjct: 312 LGDKVIEVNNLTKSYG-----ERTLIDD--------LSFSIP-------KGAIVGIIGAN 351 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G VM LA+ D FR + D+ +W + ++ + + Sbjct: 352 GAGKSTLFRMLSGQEQPDSGSIVMGETVVLASVDQFRDSMDDKKTVWEEVSNGQDILTIG 411 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 412 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 455 >gi|308273534|emb|CBX30136.1| hypothetical protein N47_D29450 [uncultured Desulfobacterium sp.] Length = 351 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 17/173 (9%) Query: 128 IGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 I KL+ +++ +KV L + D +R AI+QLK +A+ + + D A Sbjct: 175 IAKLAAQLTLKNKIKVGLISIDNYRIGAIEQLKTYANILGIPCMPAFNRKDLVAAI---- 230 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL--DPHAPHSVLQVLDATTGQN 244 + VD +IIDTAG+ + GK I L+ + D S L +L+ T + Sbjct: 231 --GRLSNVDAIIIDTAGQSQYD-------GKRIEELRNIITDDLKIESHL-LLNVATAEE 280 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 + ++ + ++ I TK+D + + G +I ++ ++PV +L G+ + D Sbjct: 281 EMNKIAINFSLLEYKSYIFTKLDESEKYGSVINQLMKKQLPVSYLTTGQNVPD 333 >gi|254491645|ref|ZP_05104824.1| SRP54-type protein, GTPase domain [Methylophaga thiooxidans DMS010] gi|224463123|gb|EEF79393.1| SRP54-type protein, GTPase domain [Methylophaga thiooxydans DMS010] Length = 400 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/187 (22%), Positives = 81/187 (43%), Gaps = 14/187 (7%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 + +VG GVGKTT I K++ + + +V L D +R +QL+ +A Sbjct: 187 IFALVGPTGVGKTTTIAKMAARCALKYGAREVALVTTDCYRIGGQEQLRSYARILGVPVR 246 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + S+ A + + ++IDTAG + L +LK+ P Sbjct: 247 VARTHSELAYTLNDLLDRR------FILIDTAGMNQRDMQLTEKFA----LLKQQSPRVK 296 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 + L A T + + + + +G I+TK D T+ GG + ++ H++P+ ++ Sbjct: 297 TYL--TLSANTQASGINDIINAFSHLDLSGCIVTKTDETSSLGGALSALIRHRLPLAYVA 354 Query: 291 VGEGIND 297 G+ + + Sbjct: 355 NGQQVPE 361 >gi|145630881|ref|ZP_01786658.1| ABC transporter ATP-binding protein [Haemophilus influenzae R3021] gi|144983541|gb|EDJ91009.1| ABC transporter ATP-binding protein [Haemophilus influenzae R3021] Length = 556 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG + S K + D ++S R E +L I G Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E + LTK Y R L D + S P + ++ ++G N Sbjct: 320 LGDKVIEVQNLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G V+LA+ D FR A D+ +W + ++ + + Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSVTMGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463 >gi|307252917|ref|ZP_07534805.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859555|gb|EFM91580.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 548 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG + S K + D ++S R E +L I G Sbjct: 257 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E LTK Y +R L D + S P + ++ ++G N Sbjct: 312 LGDKVIEVNNLTKSYG-----ERTLIDD--------LSFSIP-------KGAIVGIIGAN 351 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G VM LA+ D FR + D+ +W + ++ + + Sbjct: 352 GAGKSTLFRMLSGQEQPDSGSIVMGETVVLASVDQFRDSMDDKKTVWEEVSNGQDILNIG 411 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 412 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 455 >gi|301156131|emb|CBW15602.1| fused predicted transporter subunits of ABC superfamily: ATP-binding components [Haemophilus parainfluenzae T3T1] Length = 548 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG + S K + D ++S R E +L I G Sbjct: 257 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E E LTK Y R L D + S P + ++ ++G N Sbjct: 312 LGDKVIEVEHLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGPN 351 Query: 121 GVGKTTVIGKLS-KKMSDA-----GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+ G V+LA+ D FR + D+ +W + ++ + + Sbjct: 352 GAGKSTLFRMLSGQEQPDSGSITMGETVVLASVDQFRDSMDDKKTVWEEVSNGQDILTIG 411 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 412 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 455 >gi|224154027|ref|XP_002337428.1| predicted protein [Populus trichocarpa] gi|222839177|gb|EEE77528.1| predicted protein [Populus trichocarpa] Length = 162 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 13/143 (9%) Query: 35 IISSRRLDDGVREELEDLLIRSDIGVAVA-------QKIVE-ELLTKRYAKDVSVQRVLY 86 II + L+D + E+ L++SD+ + +KIV + L + K +Q+ ++ Sbjct: 22 IIDEKALNDCL-NEITRALLQSDVQFKLVRDMQTNIKKIVNLDDLAAGHNKRRIIQQAIF 80 Query: 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 + EL K+L P F + V++ VG+ G GKTT K + G K L Sbjct: 81 N--ELC-KILDPGKSSFTPK-KGKTSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 Query: 147 GDTFRSAAIDQLKIWADRTSADF 169 DTFR+ A DQLK A + F Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPF 159 >gi|260582939|ref|ZP_05850723.1| ABC transporter ATP-binding protein [Haemophilus influenzae NT127] gi|260094039|gb|EEW77943.1| ABC transporter ATP-binding protein [Haemophilus influenzae NT127] Length = 556 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG + S K + D ++S R E +L I G Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E + LTK Y R L D + S P + ++ ++G N Sbjct: 320 LGDKVIEVQNLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G V+LA+ D FR A D+ +W + ++ + + Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSVTMGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463 >gi|238025870|ref|YP_002910101.1| flagellar biosynthesis regulator FlhF [Burkholderia glumae BGR1] gi|124695887|gb|ABN14281.1| FlhF [Burkholderia glumae BGR1] gi|237875064|gb|ACR27397.1| FlhF [Burkholderia glumae BGR1] Length = 574 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 88/196 (44%), Gaps = 21/196 (10%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 R V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 340 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGRILG 399 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 + G D LA + +++IDT G + + I +L+ D Sbjct: 400 VPVHAVKDGGDLQ-LALSELRNKH-----IVLIDTIGMSQRDRT----VSDQIAMLQGAD 449 Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-----TGLIMTKMDGTARGGGLIPIVVT 281 A L +L AT+ + L +V A G+ G I+TK+D GG++ V+ Sbjct: 450 --ARVQRLLLLAATSHGDTLNEV--VQAYRGSDQPDLAGCILTKLDEATNLGGVLDTVIR 505 Query: 282 HKIPVYFLGVGEGIND 297 +++PV+++ G+ + + Sbjct: 506 YQLPVHYVSTGQKVPE 521 >gi|190150602|ref|YP_001969127.1| ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189915733|gb|ACE61985.1| ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 556 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG + S K + D ++S R E +L I G Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E LTK Y +R L D + S P + ++ ++G N Sbjct: 320 LGDKVIEVNNLTKSYG-----ERTLIDD--------LSFSIP-------KGAIVGIIGAN 359 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G VM LA+ D FR + D+ +W + ++ + + Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSIVMGETVVLASVDQFRDSMDDKKTVWEEVSNGQDILTIG 419 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463 >gi|145636882|ref|ZP_01792547.1| ABC transporter ATP-binding protein [Haemophilus influenzae PittHH] gi|319776139|ref|YP_004138627.1| ABC transporter ATP-binding protein [Haemophilus influenzae F3047] gi|329123304|ref|ZP_08251870.1| ABC superfamily ATP binding cassette transporter, ABC protein [Haemophilus aegyptius ATCC 11116] gi|145269963|gb|EDK09901.1| ABC transporter ATP-binding protein [Haemophilus influenzae PittHH] gi|309972989|gb|ADO96190.1| Probable ABC transport system, ATP-binding protein [Haemophilus influenzae R2846] gi|317450730|emb|CBY86950.1| ABC transporter ATP-binding protein [Haemophilus influenzae F3047] gi|327471400|gb|EGF16850.1| ABC superfamily ATP binding cassette transporter, ABC protein [Haemophilus aegyptius ATCC 11116] Length = 556 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG + S K + D ++S R E +L I G Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E + LTK Y R L D + S P + ++ ++G N Sbjct: 320 LGDKVIEVQNLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G V+LA+ D FR A D+ +W + ++ + + Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSVTMGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463 >gi|303250636|ref|ZP_07336833.1| putative ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650624|gb|EFL80783.1| putative ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 556 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG + S K + D ++S R E +L I G Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E LTK Y +R L D + S P + ++ ++G N Sbjct: 320 LGDKVIEVNNLTKSYG-----ERTLIDD--------LSFSIP-------KGAIVGIIGAN 359 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G VM LA+ D FR + D+ +W + ++ + + Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSIVMGETVVLASVDQFRDSMDDKKTVWEEVSNGQDILNIG 419 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463 >gi|297787855|ref|XP_002862151.1| hypothetical protein ARALYDRAFT_359800 [Arabidopsis lyrata subsp. lyrata] gi|297307306|gb|EFH38409.1| hypothetical protein ARALYDRAFT_359800 [Arabidopsis lyrata subsp. lyrata] Length = 206 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 35/77 (45%) Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P V+ V+D++ GQ A Q + F I+T + G A+ G I V K P+ Sbjct: 2 PARVVYVMDSSIGQAAFDQAQAFKQCFPRGVAIITNIHGNAKACGAISAVAAAKCPMILA 61 Query: 290 GVGEGINDLEPFVAKDF 306 GE D E F A+ F Sbjct: 62 ETGEKREDFEAFEAEAF 78 >gi|253997222|ref|YP_003049286.1| flagellar biosynthesis regulator FlhF [Methylotenera mobilis JLW8] gi|253983901|gb|ACT48759.1| GTP-binding signal recognition particle SRP54 G- domain protein [Methylotenera mobilis JLW8] Length = 459 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 57/247 (23%), Positives = 110/247 (44%), Gaps = 21/247 (8%) Query: 51 DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110 ++L+ S A+A+ +L+++ +++ + L V ++ K L L P + Sbjct: 178 NILLSSGFSAALAR-----MLSEKMPANLNEAKALAWVKAILSKNLDNL--PSEMGMLDQ 230 Query: 111 PHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 + ++G GVGKTT KL+ + M + L D +R +QL+I+ Sbjct: 231 GGIFALIGPTGVGKTTTTAKLAARYVMKHGTESLGLITTDAYRIGGHEQLRIYGKILG-- 288 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 V D A L A + + K+ ++IDT G ++++ I + + + Sbjct: 289 -VMVHAVKDEADLKI-ALNELKNKRT--ILIDTVGVSQRDTMVTEQIAMLS------NTN 338 Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 A L L+AT+ L V + G G I+TK+D GG++ +++ K+ +Y+ Sbjct: 339 AGIKKLLCLNATSTGETLTDVIRAYKGKGLDGTIITKLDEAVTIGGVLDVIIRGKLKLYY 398 Query: 289 LGVGEGI 295 L G+ + Sbjct: 399 LANGQRV 405 >gi|253996638|ref|YP_003048702.1| flagellar biosynthesis regulator FlhF [Methylotenera mobilis JLW8] gi|253983317|gb|ACT48175.1| GTP-binding signal recognition particle SRP54 G- domain protein [Methylotenera mobilis JLW8] Length = 427 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 16/186 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + M + L D +R +QL+I+ + Sbjct: 203 VFALIGPTGVGKTTTTAKLAARYVMKHGTQNLGLITTDAYRVGGHEQLRIYGKILG--VI 260 Query: 171 CSEIGSDA-AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + +A ALA K +D + + R+ I + G + Sbjct: 261 VHAVKDEADLALALNELKHKHTILIDTVGVSQRDRMVTEQIALLSAG-----------NT 309 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 P L L AT L V + G G I+TK+D A G + +++ K+ +Y+ Sbjct: 310 PIKKLLCLSATNTGETLTDVISAYKGKGLDGCIITKLDEAATIGNTLDVIIREKLKLYYT 369 Query: 290 GVGEGI 295 G+ + Sbjct: 370 ATGQRV 375 >gi|148827041|ref|YP_001291794.1| putative ABC transporter ATP-binding protein [Haemophilus influenzae PittGG] gi|148718283|gb|ABQ99410.1| ABC transporter ATP-binding protein [Haemophilus influenzae PittGG] Length = 556 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG + S K + D ++S R E +L I G Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E + LTK Y R L D + S P + ++ ++G N Sbjct: 320 LGDKVIEVQNLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ SD+G V+LA+ D FR A ++ +W + ++ + + Sbjct: 360 GAGKSTLFRMLSGQEQSDSGSVTMGETVVLASVDQFRDAMDNKKTVWEEVSNGQDILTIG 419 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463 >gi|319896948|ref|YP_004135143.1| abc transporter ATP-binding protein [Haemophilus influenzae F3031] gi|317432452|emb|CBY80807.1| ABC transporter ATP-binding protein [Haemophilus influenzae F3031] Length = 556 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG + S K + D ++S R E +L I G Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E + LTK Y R L D + S P + ++ ++G N Sbjct: 320 LGDKVIEVQNLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G V+LA+ D FR A D+ +W + ++ + + Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSVTMGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463 >gi|145633288|ref|ZP_01789019.1| ABC transporter ATP-binding protein [Haemophilus influenzae 3655] gi|145634417|ref|ZP_01790127.1| ABC transporter ATP-binding protein [Haemophilus influenzae PittAA] gi|229845020|ref|ZP_04465156.1| putative ABC transporter ATP-binding protein [Haemophilus influenzae 6P18H1] gi|144986134|gb|EDJ92724.1| ABC transporter ATP-binding protein [Haemophilus influenzae 3655] gi|145268397|gb|EDK08391.1| ABC transporter ATP-binding protein [Haemophilus influenzae PittAA] gi|229811992|gb|EEP47685.1| putative ABC transporter ATP-binding protein [Haemophilus influenzae 6P18H1] Length = 556 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG + S K + D ++S R E +L I G Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E + LTK Y R L D + S P + ++ ++G N Sbjct: 320 LGDKVIEVQNLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G V+LA+ D FR A D+ +W + ++ + + Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSVTMGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463 >gi|317121834|ref|YP_004101837.1| GTP-binding signal recognition particle SRP54 G- domain [Thermaerobacter marianensis DSM 12885] gi|315591814|gb|ADU51110.1| GTP-binding signal recognition particle SRP54 G- domain [Thermaerobacter marianensis DSM 12885] Length = 451 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 88/208 (42%), Gaps = 23/208 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 + VVG G GKTTV+ L+ + + D G +V L A DT+R A L +AD Sbjct: 231 TVAVVGPTGAGKTTVVASLAARALLDEGREVALLAADTYRLGATSALSAYADLLGVPLEV 290 Query: 172 SEIGSDAAALAY-------EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + + AA A ++A + V ++DTAGR + A + +++ + Sbjct: 291 AYAPGEVAAWAGVRPGGADHRPEEATRRPDRVALVDTAGRNLLLPEVAAELAALVQAAR- 349 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 P VL VL AT + G T L++TK+D + + Sbjct: 350 -----PDRVLLVLPATLAPAEAAALVGVGRRLGVTDLVLTKLDECLDPRAALARAARWGL 404 Query: 285 PVYFLGVGEGIND---------LEPFVA 303 P+ +GVG+ + D LEP++A Sbjct: 405 PLALVGVGQRVPDDLLPGTPEALEPWLA 432 >gi|187926253|ref|YP_001892598.1| GTP-binding signal recognition particle SRP54 G- domain [Ralstonia pickettii 12J] gi|241665741|ref|YP_002984100.1| flagellar biosynthesis regulator FlhF [Ralstonia pickettii 12D] gi|187728007|gb|ACD29171.1| GTP-binding signal recognition particle SRP54 G- domain [Ralstonia pickettii 12J] gi|240867768|gb|ACS65428.1| GTP-binding signal recognition particle SRP54 G- domain protein [Ralstonia pickettii 12D] Length = 632 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 42/185 (22%), Positives = 85/185 (45%), Gaps = 14/185 (7%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + + +V L + D++R +QL+I+ Sbjct: 402 VFALMGPTGVGKTTTTAKLAARFVLRHGASRVALLSTDSYRIGGHEQLRIYGKILGVSVH 461 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + D + LA ++ V++IDT G + + + + +L + P Sbjct: 462 AVKDAQDLS-LALNDLREKH-----VVLIDTIGMSQRDR----AVSEQMAMLHAVGPSIK 511 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 L +L+A + L +V + A G I+TK+D A G + +++ ++P++++ Sbjct: 512 R--LLLLNAASNGKTLDEVVGAYRDANLAGCILTKIDEAASVGHAMDVMIRRRLPLHYVS 569 Query: 291 VGEGI 295 G+ + Sbjct: 570 YGQRV 574 >gi|300697967|ref|YP_003748628.1| flagellar biosynthetic protein flhF [Ralstonia solanacearum CFBP2957] gi|299074691|emb|CBJ54248.1| putative flagellar biosynthetic protein flhF [Ralstonia solanacearum CFBP2957] Length = 610 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 43/187 (22%), Positives = 88/187 (47%), Gaps = 14/187 (7%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + + +V L + D++R +QL+I+ V Sbjct: 384 VFALMGPTGVGKTTTTAKLAARFVLRHGASRVALLSTDSYRIGGHEQLRIYGKILG---V 440 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 DA L+ ++ V++IDT G + + + + +L + P Sbjct: 441 TVHAVKDAQDLS---LALGDLREKHVVLIDTIGMSQRDR----AVSEQMAMLHAVGPSIK 493 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 L +L++T+ L +V + A G I+TK+D A G + +++ +++P++++ Sbjct: 494 R--LLLLNSTSNGKTLDEVVSAYRDANLAGCILTKIDEAASVGHAMDVMIRNRLPLHYVS 551 Query: 291 VGEGIND 297 G+ + + Sbjct: 552 YGQRVPE 558 >gi|242280060|ref|YP_002992189.1| flagellar biosynthesis protein FlhF [Desulfovibrio salexigens DSM 2638] gi|242122954|gb|ACS80650.1| flagellar biosynthesis protein FlhF, putative [Desulfovibrio salexigens DSM 2638] Length = 362 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 51/203 (25%), Positives = 84/203 (41%), Gaps = 25/203 (12%) Query: 116 VVGVNGVGKTTVIGKLS--KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 + G +G GKT+ I +L+ +K + ++ LA+ D + L+ +AD + +F Sbjct: 160 LAGPHGAGKTSTIIRLALKEKKENPTARICLASADQGQGKGRLVLRHYADLSGLEFRELA 219 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP--- 230 D A L E+ +K D + ID G + G ++ L H P Sbjct: 220 SREDFAKLIGES------RKFDRVFIDLPG--------LGGNAELEGWLTACGMHGPCDL 265 Query: 231 --HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288 H VL A A ++ F + + LI TK+D G L+ +PV Sbjct: 266 AVHLVLNPYYAPAQYTAF--LKKFQS-SKVKSLIWTKLDEACNYGALVNTSYESGLPVSL 322 Query: 289 LGVGEGI-NDLEPFVAKDFSAVI 310 L G G+ N ++P KDF ++ Sbjct: 323 LSYGSGLRNSMQPACEKDFWRLV 345 >gi|289208352|ref|YP_003460418.1| flagellar biosynthetic protein FlhF [Thioalkalivibrio sp. K90mix] gi|288943983|gb|ADC71682.1| flagellar biosynthetic protein FlhF [Thioalkalivibrio sp. K90mix] Length = 424 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 57/216 (26%), Positives = 97/216 (44%), Gaps = 31/216 (14%) Query: 113 VILVVGVNGVGKTTVIGKLS-KKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V+ +VG GVGKTT + +++ +++ G V L DT R A QL+ +A Sbjct: 179 VLALVGPTGVGKTTTLARIALRQIRRMGADSVTLVTLDTQRIGATRQLQAFAQMAGVSLR 238 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN---NSILMAGIGKMIRVLKRLDP 227 + + +A A+A+ +++ DTAG+ + + L AG +R L Sbjct: 239 VLQNPRELRDMA------ARAEDGHLILADTAGQAPSVVGDESLFAGWPDRVRCESWL-- 290 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 V+ ATT +ALR+V L++TK+D + G + +++ + + Sbjct: 291 --------VVSATTQASALRRVLDAFRKTEPAALVLTKLDEAEQLGETLSVLLDQHLGLT 342 Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLDY---GEEK 320 F+ G+ I A+DF V TG L GEE+ Sbjct: 343 FVSDGQRI-------AEDFHRVETGDLTRRALGEER 371 >gi|134094537|ref|YP_001099612.1| flagellar biosynthesis regulator FlhF [Herminiimonas arsenicoxydans] gi|133738440|emb|CAL61485.1| putative flagellar biosynthesis regulator FlhF [Herminiimonas arsenicoxydans] Length = 423 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 26/193 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V +VG GVGKTT KL+ + M K+ L D +R +QL+I+ V Sbjct: 196 VYALVGPTGVGKTTTTAKLAARCVMRHGPGKLALITTDGYRIGGYEQLRIYGKILG---V 252 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI------LMAGIGKMIRVLKR 224 D A L A + + K ++IDT G +++ +++G G + KR Sbjct: 253 MVHSVKDEADLRI-ALDELKGKHT--VLIDTVGVSQRDNMVAEQIAMLSGAGSQV---KR 306 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 L L+AT+ L +V + G G I+TK+D A G + +V+ K+ Sbjct: 307 L---------LCLNATSTGETLNEVARSYMGDGLAGCILTKLDEAATIGSALDVVIRQKL 357 Query: 285 PVYFLGVGEGIND 297 +Y++ G+ + + Sbjct: 358 NLYYVANGQRVPE 370 >gi|83749401|ref|ZP_00946395.1| Probable flagellar biosynthesis protein (flhF) [Ralstonia solanacearum UW551] gi|207738853|ref|YP_002257246.1| flagellar biosynthetic protein flhf [Ralstonia solanacearum IPO1609] gi|83723928|gb|EAP71112.1| Probable flagellar biosynthesis protein (flhF) [Ralstonia solanacearum UW551] gi|206592223|emb|CAQ59129.1| flagellar biosynthetic protein flhf [Ralstonia solanacearum IPO1609] Length = 610 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 43/187 (22%), Positives = 88/187 (47%), Gaps = 14/187 (7%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + + +V L + D++R +QL+I+ V Sbjct: 384 VFALMGPTGVGKTTTTAKLAARFVLRHGASRVALLSTDSYRIGGHEQLRIYGKILG---V 440 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 DA L+ ++ V++IDT G + + + + +L + P Sbjct: 441 TVHAVKDAQDLS---LALGDLREKHVVLIDTIGMSQRDR----AVSEQMAMLHAVGPSIK 493 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 L +L++T+ L +V + A G I+TK+D A G + +++ +++P++++ Sbjct: 494 R--LLLLNSTSNGKTLDEVVSAYRDANLAGCILTKIDEAASVGHAMDVMIRNRLPLHYVS 551 Query: 291 VGEGIND 297 G+ + + Sbjct: 552 YGQRVPE 558 >gi|290889934|ref|ZP_06553021.1| hypothetical protein AWRIB429_0411 [Oenococcus oeni AWRIB429] gi|290480544|gb|EFD89181.1| hypothetical protein AWRIB429_0411 [Oenococcus oeni AWRIB429] Length = 198 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 9/86 (10%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH--- 109 LI +D+G +A KI EL + K+ S ++ + + +I K++ + N + + Sbjct: 115 LIAADVGFEMALKISNELQDEVRLKNASSKKDVQNT--IIEKLVNVYDQAGNGENNEMLF 172 Query: 110 ----RPHVILVVGVNGVGKTTVIGKL 131 +P V L VGVNGVGKTT IGK+ Sbjct: 173 AEAGQPSVFLFVGVNGVGKTTTIGKM 198 >gi|293385100|ref|ZP_06630926.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis R712] gi|293389073|ref|ZP_06633545.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis S613] gi|291077577|gb|EFE14941.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis R712] gi|291081541|gb|EFE18504.1| signal recognition particle-docking protein FtsY [Enterococcus faecalis S613] Length = 271 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 8/101 (7%) Query: 53 LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109 LI +D+G + KI E L ++ K +V++ + +I KM+ + N + Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230 Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147 +P+ VIL VGVNGVGKTT IGKL+ + G KV++AA Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAA 271 >gi|291613027|ref|YP_003523184.1| flagellar biosynthetic protein FlhF [Sideroxydans lithotrophicus ES-1] gi|291583139|gb|ADE10797.1| flagellar biosynthetic protein FlhF [Sideroxydans lithotrophicus ES-1] Length = 438 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 86/194 (44%), Gaps = 16/194 (8%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V +VG GVGKTT K++ + + KV L D++R A +QLKI+ Sbjct: 208 DVVARGGVYALVGPTGVGKTTTTAKMAARAVVRYGADKVALVTTDSYRIGAHEQLKIYG- 266 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + V + ++ L K +++IDT G +S ++ + Sbjct: 267 KILGVSVHAVRDTEDLKLTLSGLKHKH-----LVLIDTMGVGQRDS-------RVAEQAQ 314 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 D +L +L+AT+ L V + G G I TK+D G ++ +VV HK Sbjct: 315 MFDTVGVQRLL-LLNATSSGGTLEDVVKMYGGTGVIGCIPTKLDEAVTLGTVLDVVVRHK 373 Query: 284 IPVYFLGVGEGIND 297 + ++++ G+ + + Sbjct: 374 LTMHYVASGQRVPE 387 >gi|74055049|gb|AAZ95854.1| FlhF [Aeromonas hydrophila] Length = 472 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 57/254 (22%), Positives = 117/254 (46%), Gaps = 32/254 (12%) Query: 77 KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK-- 134 +D+S+ + + ++E++ L K D + + ++G GVGK T I KL+ + Sbjct: 223 EDMSIHQAMAQLAEVLTAQL----KISEDDILRQGGAVALLGPTGVGKATTIAKLAARFA 278 Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194 M +V L D +R A +QL+ + DA LA + Q + Sbjct: 279 MKYGAEQVALITTDNYRIGAHEQLQTYGRIMGCPVRQVR---DAEELANALY---QFRHR 332 Query: 195 DVLIIDTAGRLHNNSILMAGIGKM-IRVLKRLDPHAPHSVLQ-----VLDATTGQNALRQ 248 +++IDTAG +G+ IR+ ++LD ++ ++ V+ AT+ + +++ Sbjct: 333 RLVLIDTAG-----------VGQRDIRLTEQLDTLVKNAKVRIRSYLVMSATSQRRVMQE 381 Query: 249 -VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDF 306 V+ F + +G I+TK+D + G +I + + + +P+ ++ G+ + D++ A Sbjct: 382 AVDHFRRIP-LSGCILTKLDESLNLGEVINVCIQNALPISYITDGQRVPEDIQVANAAQL 440 Query: 307 SAVITGCLDYGEEK 320 G L+ E+ Sbjct: 441 VGAAMGSLERETEE 454 >gi|213421009|ref|ZP_03354075.1| signal recognition particle protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 150 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 78/150 (52%), Gaps = 13/150 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76 F + + +L + +I RL +D V+E L ++ L+ +D+ + V ++ + + K Sbjct: 2 FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61 Query: 77 KDVSV-----QRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +V+ Q + V SEL+ M ++ N + P V+L+ G+ G GKTT +GK Sbjct: 62 HEVNKSLTPGQEFVKIVRSELVAAM-GEENQTLNLA-AQPPAVVLMAGLQGAGKTTSVGK 119 Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLK 159 L K + + KV++ + D +R AAI QL+ Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLE 149 >gi|157813198|gb|ABV81344.1| putative signal recognition particle protein [Cypridopsis vidua] Length = 101 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 33/55 (60%) Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 +I+TK+DG A+GGG + V P+ F+G GE I+D E F + F + + G D Sbjct: 12 VIITKLDGHAKGGGALSAVAATMSPIIFIGTGEHIDDFEVFKVRPFVSKLLGMGD 66 >gi|145642242|ref|ZP_01797808.1| ABC transporter ATP-binding protein [Haemophilus influenzae R3021] gi|145273047|gb|EDK12927.1| ABC transporter ATP-binding protein [Haemophilus influenzae 22.4-21] Length = 470 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG + S K + D ++S R E +L I G Sbjct: 179 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 233 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E + LTK Y R L D + S P + ++ ++G N Sbjct: 234 LGDKVIEVQNLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 273 Query: 121 GVGKTTVIGKLS-KKMSDA-----GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+ G V+LA+ D FR A D+ +W + ++ + + Sbjct: 274 GAGKSTLFRMLSGQEQPDSGSVTMGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 333 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 334 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 377 >gi|330901773|gb|EGH33192.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv. japonica str. M301072PT] Length = 221 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 22/181 (12%) Query: 123 GKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GKTT + KL+ + + + L + D+FR A +QLK + + G Sbjct: 13 GKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVTHIDPGQSLV- 71 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLDPHAPHSVLQV 236 +A + K+V ++IDTAG ++ L + G+ I+ L V Sbjct: 72 ---QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL----------V 116 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 L T+ + L + G G I+TK+D TA G ++ + ++H++PV +L G I Sbjct: 117 LATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPVAYLTDGPRIP 176 Query: 297 D 297 D Sbjct: 177 D 177 >gi|167946939|ref|ZP_02534013.1| cell division protein FtsY [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 52 Score = 45.4 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 20/43 (46%), Positives = 29/43 (67%) Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 TK+DGTA+GG + I K+P+ F+GVGE + DL F ++F Sbjct: 1 TKLDGTAKGGVIFAIGDKLKLPIRFIGVGESVEDLREFNPQEF 43 >gi|167623394|ref|YP_001673688.1| flagellar biosynthesis regulator FlhF [Shewanella halifaxensis HAW-EB4] gi|167353416|gb|ABZ76029.1| GTP-binding signal recognition particle SRP54 G- domain [Shewanella halifaxensis HAW-EB4] Length = 470 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 54/251 (21%), Positives = 109/251 (43%), Gaps = 28/251 (11%) Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114 +G + K++E + AK +S Y +EL+ + L+ + D + V+ Sbjct: 197 VGAMLESKLLEAEFSPAIAKKLSSLSEHYSPAELVASLPRSLANMLDNQGDDIVRQGGVV 256 Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 VG GVGKTT + KL+ + + +V L D +R A +QL + + Sbjct: 257 AFVGPTGVGKTTTVAKLAARFAAYHGSDQVALITTDHYRIGAFEQLATYGKIMGCPVKQA 316 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 S+ + Y Q + +++IDTAG + R+ ++LD A +S Sbjct: 317 HDFSELEQILY------QFRNRKLVLIDTAGMGQRDQ----------RLFQQLDSLAANS 360 Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 L + + TGQ + + V+ F + +G ++TK+D + + +++ +P+ Sbjct: 361 RLPIRSYLVMSATGQRRVLEDAVKQFTRIP-LSGAVLTKLDESISLAPALSVLIQSGLPL 419 Query: 287 YFLGVGEGIND 297 ++ G+ + + Sbjct: 420 SYVTDGQRVPE 430 >gi|152978654|ref|YP_001344283.1| putative ABC transporter ATP-binding protein [Actinobacillus succinogenes 130Z] gi|150840377|gb|ABR74348.1| ABC transporter related [Actinobacillus succinogenes 130Z] Length = 560 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 95/224 (42%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG + S K + D ++S R E +L I G Sbjct: 269 ARQKSIEKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 323 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E E LTK Y R L D + S P + ++ ++G N Sbjct: 324 LGDKVIEVEHLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 363 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G VM LA+ D FR + D+ +W + ++ + + Sbjct: 364 GAGKSTLFRMLSGQEQPDSGSIVMGETVVLASVDQFRDSMDDKKTVWEEVSNGQDILTIG 423 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K V L GRLH +L G Sbjct: 424 NFEIPSRAYVGRFNFKGVDQQKLVGELSGGERGRLHLAKLLQRG 467 >gi|309778950|ref|ZP_07673720.1| flagellar biosynthesis protein FlhF [Ralstonia sp. 5_7_47FAA] gi|308922297|gb|EFP67924.1| flagellar biosynthesis protein FlhF [Ralstonia sp. 5_7_47FAA] Length = 639 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 42/185 (22%), Positives = 85/185 (45%), Gaps = 14/185 (7%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + + +V L + D++R +QL+I+ Sbjct: 409 VFALMGPTGVGKTTTTAKLAARFVLRHGASRVALLSTDSYRIGGHEQLRIYGKILGVSVH 468 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + D + LA ++ V++IDT G + + + + +L + P Sbjct: 469 AVKDAQDLS-LALNDLREKH-----VVLIDTIGMSQRDR----AVSEQMAMLHAVGPSIK 518 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 L +L+A + L +V + A G I+TK+D A G + +++ ++P++++ Sbjct: 519 R--LLLLNAASNGKTLDEVVGAYRDANLAGCILTKIDEAASVGHAMDVMIRRRLPLHYVS 576 Query: 291 VGEGI 295 G+ + Sbjct: 577 YGQRV 581 >gi|33151470|ref|NP_872823.1| putative ABC transporter ATP-binding protein [Haemophilus ducreyi 35000HP] gi|33147690|gb|AAP95212.1| ABC transporter ATP-binding protein [Haemophilus ducreyi 35000HP] Length = 556 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 95/224 (42%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG + S K + D ++S R E +L I G Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E + L K Y R L D + S P + ++ ++G N Sbjct: 320 LGDKVIEVQHLMKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359 Query: 121 GVGKTTVIGKLS-KKMSDA-----GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS K+ D+ G V LA+ D FR A D+ +W + ++ + + Sbjct: 360 GAGKSTLFRMLSGKEQPDSGSIMLGETVTLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463 >gi|16273171|ref|NP_439408.1| putative ABC transporter ATP-binding protein [Haemophilus influenzae Rd KW20] gi|68250216|ref|YP_249328.1| putative ABC transporter ATP-binding protein [Haemophilus influenzae 86-028NP] gi|145629314|ref|ZP_01785113.1| ABC transporter ATP-binding protein [Haemophilus influenzae 22.1-21] gi|145638825|ref|ZP_01794433.1| ABC transporter ATP-binding protein [Haemophilus influenzae PittII] gi|148825845|ref|YP_001290598.1| putative ABC transporter ATP-binding protein [Haemophilus influenzae PittEE] gi|229846844|ref|ZP_04466951.1| putative ABC transporter ATP-binding protein [Haemophilus influenzae 7P49H1] gi|260581170|ref|ZP_05848990.1| ABC transporter ATP-binding protein [Haemophilus influenzae RdAW] gi|1176478|sp|P45127|Y1252_HAEIN RecName: Full=Uncharacterized ABC transporter ATP-binding protein HI_1252 gi|1574184|gb|AAC22902.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd KW20] gi|68058415|gb|AAX88668.1| ABC transporter ATP-binding protein [Haemophilus influenzae 86-028NP] gi|144978817|gb|EDJ88540.1| ABC transporter ATP-binding protein [Haemophilus influenzae 22.1-21] gi|145271797|gb|EDK11706.1| ABC transporter ATP-binding protein [Haemophilus influenzae PittII] gi|148716005|gb|ABQ98215.1| hypothetical protein CGSHiEE_04020 [Haemophilus influenzae PittEE] gi|229810333|gb|EEP46052.1| putative ABC transporter ATP-binding protein [Haemophilus influenzae 7P49H1] gi|260092198|gb|EEW76141.1| ABC transporter ATP-binding protein [Haemophilus influenzae RdAW] gi|309750808|gb|ADO80792.1| Probable ABC transport system, ATP-binding protein [Haemophilus influenzae R2866] Length = 556 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG + S K + D ++S R E +L I G Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E + LTK Y R L D + S P + ++ ++G N Sbjct: 320 LGDKVIEVQNLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G V+LA+ D FR + D+ +W + ++ + + Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSVTMGETVVLASVDQFRDSMDDKKTVWEEVSNGQDILTIG 419 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463 >gi|221214211|ref|ZP_03587183.1| flagellar biosynthetic protein FlhF [Burkholderia multivorans CGD1] gi|221165866|gb|EED98340.1| flagellar biosynthetic protein FlhF [Burkholderia multivorans CGD1] Length = 597 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 33/209 (15%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 R V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 349 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG- 407 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V DA L+ ++ + +++IDT G + + I +L Sbjct: 408 --VPVHAVKDAGDLS---LALSELRNKHIVLIDTIGMSQRDR----AVSDQIAMLH--GA 456 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGT-------------------TGLIMTKMDG 268 P L +L+AT+ + L +V + AG G I+TK+D Sbjct: 457 STPVQRLLLLNATSHGDTLNEVVQAYRSAGDRADLAGPDLAGPDLAGPDLAGCILTKLDE 516 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGIND 297 GG + V+ +K+PV+++ G+ + + Sbjct: 517 ATHLGGALDTVIRYKLPVHYVSTGQKVPE 545 >gi|307246200|ref|ZP_07528281.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255180|ref|ZP_07536998.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259618|ref|ZP_07541342.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852809|gb|EFM85033.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862053|gb|EFM94029.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866263|gb|EFM98127.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 548 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 96/225 (42%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG + S K + D ++S R E +L I G Sbjct: 257 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E L+K Y R L D N FS + ++ ++G Sbjct: 312 LGDKVIEVSNLSKSYG-----DRTLID----------------NLSFSIPKGAIVGIIGA 350 Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS- 172 NG GK+T+ LS ++ D+G VM LA+ D FR + D+ +W + ++ + + Sbjct: 351 NGAGKSTLFRMLSGQEQPDSGSIVMGETVVLASVDQFRDSMDDKKTVWEEVSNGQDILTI 410 Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 411 GNFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 455 >gi|984323|gb|AAB17124.1| signal recognition particle 54 kDa subunit [Rattus norvegicus] Length = 70 Score = 45.1 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 33/70 (47%) Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 + VG+ G GKTT KL+ G K L DTFR+ A DQLK A + F S Sbjct: 1 MFVGLQGSGKTTTCSKLAYFYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYT 60 Query: 175 GSDAAALAYE 184 D +A E Sbjct: 61 EMDPVIIASE 70 >gi|78355428|ref|YP_386877.1| flagellar biosynthesis protein FlhF [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217833|gb|ABB37182.1| flagellar biosynthesis protein FlhF, putative [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 362 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 108/252 (42%), Gaps = 30/252 (11%) Query: 60 VAVAQKIVEELLTKRYAKD---VSVQRVLYDVSELIHKMLMPLSK--PF-NWDFSHRPHV 113 +A Q++ E L + +D +++ R L L +L PLS P W + P Sbjct: 101 LAPRQRVALEYLEREGVEDNVILALYRRLRGAPSL--SVLEPLSAVVPVKGWGGADWPQK 158 Query: 114 I-LVVGVNGVGKTTVIGK--LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 + +V G +GVGKT+ + + L+ + +AG+++ + D+ R + L+ +A+ + Sbjct: 159 MQIVCGPSGVGKTSAVVRMALALRRQNAGVRICVLNADSQRGSGRMVLRHYAELCGMGYH 218 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA--GRLHNNSILMAGIGKMIRVLKRLDPH 228 +DAAAL E D +++DT GR L+ G L L+ Sbjct: 219 EISGPADAAALLGEL------DGYDKILVDTPVPGRGATLRSLLEETG-----LDVLEQQ 267 Query: 229 APHSVLQVLDATTGQNALRQVEMF---HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 P +V V+ G Q+ F + GL+ TK+D G LI + +P Sbjct: 268 VPAAVQLVMSPLYGDA---QISFFLRQYECGLPCGLVWTKLDEACNFGALINVPAASGLP 324 Query: 286 VYFLGVGEGIND 297 V L G G+ + Sbjct: 325 VTALSFGSGLKN 336 >gi|152980692|ref|YP_001353775.1| flagellar biosynthesis regulator FlhF [Janthinobacterium sp. Marseille] gi|151280769|gb|ABR89179.1| FlhF flagellar biosynthesis protein [Janthinobacterium sp. Marseille] Length = 421 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 16/188 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V +VG GVGKTT KL+ + M K+ L D +R +QL+I+ + V Sbjct: 194 VYALVGPTGVGKTTTTAKLAARCVMRHGPSKLALITTDGYRIGGYEQLRIYG-KILGVMV 252 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM-AGIGKMIRVLKRLDPHA 229 S +A + K +D + + ++ + I M G G + KRL Sbjct: 253 HSVKDEADLRIALDELKGKHTVLIDTVGVSQRDQMVADQIAMLTGAGDQV---KRL---- 305 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 L+AT+ L +V + G G I+TK+D A G + +V+ K+ +Y++ Sbjct: 306 -----LCLNATSTGETLNEVVRSYMGDGLAGCILTKLDEAATIGSALDVVIRQKLNLYYV 360 Query: 290 GVGEGIND 297 G+ + + Sbjct: 361 ANGQRVPE 368 >gi|307257348|ref|ZP_07539118.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864198|gb|EFM96111.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 556 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 96/225 (42%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG + S K + D ++S R E +L I G Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E L+K Y R L D N FS + ++ ++G Sbjct: 320 LGDKVIEVSNLSKSYG-----DRTLID----------------NLSFSIPKGAIVGIIGA 358 Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS- 172 NG GK+T+ LS ++ D+G VM LA+ D FR + D+ +W + ++ + + Sbjct: 359 NGAGKSTLFRMLSGQEQPDSGSIVMGETVVLASVDQFRDSMDDKKTVWEEVSNGQDILTI 418 Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 419 GNFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463 >gi|221202385|ref|ZP_03575418.1| flagellar biosynthetic protein FlhF [Burkholderia multivorans CGD2M] gi|221208976|ref|ZP_03581972.1| flagellar biosynthetic protein FlhF [Burkholderia multivorans CGD2] gi|221171098|gb|EEE03549.1| flagellar biosynthetic protein FlhF [Burkholderia multivorans CGD2] gi|221177799|gb|EEE10213.1| flagellar biosynthetic protein FlhF [Burkholderia multivorans CGD2M] Length = 590 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 33/209 (15%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 R V ++G GVGKTT KL+ + M KV L D++R +QL+I+ Sbjct: 342 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG- 400 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 V DA L+ ++ + +++IDT G + + I +L Sbjct: 401 --VPVHAVKDAGDLS---LALSELRNKHIVLIDTIGMSQRDR----AVSDQIAMLH--GA 449 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGT-------------------TGLIMTKMDG 268 P L +L+AT+ + L +V + AG G I+TK+D Sbjct: 450 STPVQRLLLLNATSHGDTLNEVVQAYRSAGDRADLAGPDLAGPDLAGPDLAGCILTKLDE 509 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGIND 297 GG + V+ +K+PV+++ G+ + + Sbjct: 510 ATHLGGALDTVIRYKLPVHYVSTGQKVPE 538 >gi|254422095|ref|ZP_05035813.1| CobW/P47K family protein [Synechococcus sp. PCC 7335] gi|196189584|gb|EDX84548.1| CobW/P47K family protein [Synechococcus sp. PCC 7335] Length = 334 Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169 V ++ G G GKTT++ + GLKV + + F ID QL + +D+T + Sbjct: 25 VTIITGFLGSGKTTLLNHILNNAE--GLKVAVLVNE-FGDINIDTQLLVSSDQTMVELSN 81 Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +C I Y+ ++ + ++D L+I+T G I+M +G ++ L RLD Sbjct: 82 GCICCTINESLVDAVYQVLEREE--RIDYLVIETTGLADPLPIMMTFVGTSLKDLTRLD- 138 Query: 228 HAPHSVLQVLDA 239 SV+ V+DA Sbjct: 139 ----SVIGVVDA 146 >gi|83647841|ref|YP_436276.1| flagellar GTP-binding protein [Hahella chejuensis KCTC 2396] gi|83635884|gb|ABC31851.1| Flagellar GTP-binding protein [Hahella chejuensis KCTC 2396] Length = 432 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 16/200 (8%) Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQL 158 K N + H+ V ++G G GKTT + KL+ + + K+ L D FR A+ QL Sbjct: 206 KAENEELIHQRGVCALLGPTGSGKTTTLAKLAARFVVHYGAEKLALITTDRFRVASQQQL 265 Query: 159 KIWADRTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217 + + + +V E S L A K+ ++++DTAG L K Sbjct: 266 QSFGRLLNVPVYVVDEENSLDDLLDRLANKR-------LVLVDTAG-LTPQDPNWERQQK 317 Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 ++V + H + L VL A ++ ++ + +G IMTK+D G ++ Sbjct: 318 DLKVTR----HRIRNYL-VLSAVNQPQVMKSTYHYYKMLELSGCIMTKLDEAFSLGEVLS 372 Query: 278 IVVTHKIPVYFLGVGEGIND 297 + + +++PV ++ G+ I D Sbjct: 373 MAILNRLPVAYVTDGQKIPD 392 >gi|261494026|ref|ZP_05990529.1| ABC superfamily ATP binding cassette transporter, ABC protein [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496214|ref|ZP_05992620.1| ABC superfamily ATP binding cassette transporter, ABC protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308166|gb|EEY09463.1| ABC superfamily ATP binding cassette transporter, ABC protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310192|gb|EEY11392.1| ABC superfamily ATP binding cassette transporter, ABC protein [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 548 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 94/224 (41%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG + S ++ S R E +L I G Sbjct: 257 ARQKSIEKELEWVRQNPKGRQAKSKARMARFEELNSGEYQK---RNETNELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E + LTK Y + ++ D+S I K ++ ++G N Sbjct: 312 LGDKVIEVQNLTKSYGD----RTLIDDLSFAIPKGA----------------IVGIIGAN 351 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS K+ D+G V++A+ D FR A D+ +W + ++ + + Sbjct: 352 GAGKSTLFRMLSGKEQPDSGSIVLGETVVMASVDQFRDAMDDKKTVWEEVSNGQDILTIG 411 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 412 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 455 >gi|254361772|ref|ZP_04977907.1| ABC superfamily ATP binding cassette transporter, ABC protein [Mannheimia haemolytica PHL213] gi|153093307|gb|EDN74303.1| ABC superfamily ATP binding cassette transporter, ABC protein [Mannheimia haemolytica PHL213] Length = 556 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 94/224 (41%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG + S ++ S R E +L I G Sbjct: 265 ARQKSIEKELEWVRQNPKGRQAKSKARMARFEELNSGEYQK---RNETNELFIPP--GPR 319 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E + LTK Y + ++ D+S I K ++ ++G N Sbjct: 320 LGDKVIEVQNLTKSYGD----RTLIDDLSFAIPKGA----------------IVGIIGAN 359 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS K+ D+G V++A+ D FR A D+ +W + ++ + + Sbjct: 360 GAGKSTLFRMLSGKEQPDSGSIVLGETVVMASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463 >gi|113460518|ref|YP_718582.1| putative ABC transporter ATP-binding protein [Haemophilus somnus 129PT] gi|170718799|ref|YP_001783980.1| ABC transporter ATP-binding protein [Haemophilus somnus 2336] gi|112822561|gb|ABI24650.1| ABC transporter, ATP-binding protein [Haemophilus somnus 129PT] gi|168826928|gb|ACA32299.1| ABC transporter related [Haemophilus somnus 2336] Length = 556 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 97/226 (42%), Gaps = 40/226 (17%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG + S ++ SS R E +L I G Sbjct: 265 ARQKSIEKELEWVRQNPKGRQAKSKARMARFEELNSSEYQK---RNETNELFIPP--GPR 319 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E + LTK Y R L D N FS + ++ ++G Sbjct: 320 LGDKVIEVQNLTKSYG-----DRTLID----------------NLSFSIPKGAIVGIIGA 358 Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 NG GK+T+ LS ++ +D+G V++A+ D FR A D+ +W + S + Sbjct: 359 NGAGKSTLFRMLSGQEQADSGSITLGETVVMASVDQFRDAMDDKKTVW-EEVSGGLDIMK 417 Query: 174 IGS-DAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 IG+ + + AY FK Q K+V L GRLH +L G Sbjct: 418 IGNFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQVG 463 >gi|153001437|ref|YP_001367118.1| flagellar biosynthesis regulator FlhF [Shewanella baltica OS185] gi|304409944|ref|ZP_07391563.1| flagellar biosynthetic protein FlhF [Shewanella baltica OS183] gi|307302343|ref|ZP_07582101.1| flagellar biosynthetic protein FlhF [Shewanella baltica BA175] gi|151366055|gb|ABS09055.1| GTP-binding signal recognition particle SRP54 G-domain protein [Shewanella baltica OS185] gi|304351353|gb|EFM15752.1| flagellar biosynthetic protein FlhF [Shewanella baltica OS183] gi|306914381|gb|EFN44802.1| flagellar biosynthetic protein FlhF [Shewanella baltica BA175] Length = 460 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 56/275 (20%), Positives = 119/275 (43%), Gaps = 29/275 (10%) Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114 +G + K++E + A ++ Y +EL+ + L+ + D + V+ Sbjct: 187 VGAMLEAKLLEAEFSPAVANKLAALSQHYTPAELVRALPQSLANMLDNQGDDIVKQGGVV 246 Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +VG GVGKTT + KL+ + + V L D +R A +QL + + Sbjct: 247 ALVGPTGVGKTTSLAKLAARFAAHHGAEHVALITTDHYRIGAYEQLATYGKIMGCPVKQA 306 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 ++ + Y Q + +++IDTAG + +R+ ++LD +S Sbjct: 307 HDLNELEQILY------QFRNRKLVLIDTAGMGQRD----------MRLYQQLDNLTANS 350 Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 + + + TGQ + Q V F + +G+++TK+D + G + +++ + +P+ Sbjct: 351 RIPIRSYLVLSATGQRRVLQDAVNHFKRIP-LSGVVLTKLDESVSLAGALSVLIQNGLPL 409 Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVITGCLDYGEEK 320 ++ G+ + D++ D + LD E++ Sbjct: 410 SYVTDGQRVPEDMKVADTLDLAQQALAALDSTEQQ 444 >gi|126654835|ref|ZP_01726369.1| Cobalamin synthesis protein/P47K [Cyanothece sp. CCY0110] gi|126623570|gb|EAZ94274.1| Cobalamin synthesis protein/P47K [Cyanothece sp. CCY0110] Length = 339 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 16/161 (9%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRT----SA 167 V ++ G G GKTT++ + ++ LKV + + F ID QL + D S Sbjct: 22 VTIITGFLGSGKTTLVNHILT--NNQQLKVAVLVNE-FGDIDIDSQLLVSIDENMVALSN 78 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +C I D A Y+ F+Q +D LI++T G I + + +R + RLD Sbjct: 79 GCICCTINDDLVAAVYQVFEQG--DNIDYLILETTGVADPLPIALTFLNTELRDMTRLD- 135 Query: 228 HAPHSVLQVLDATTGQNALRQVE-MFHAVAGTTGLIMTKMD 267 S+L V+DA T + Q E H + +++ K D Sbjct: 136 ----SILTVVDAETFTSEHFQSEAALHQITYGDIILLNKTD 172 >gi|126175113|ref|YP_001051262.1| flagellar biosynthesis regulator FlhF [Shewanella baltica OS155] gi|125998318|gb|ABN62393.1| GTP-binding signal recognition particle SRP54, G- domain [Shewanella baltica OS155] Length = 460 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 56/275 (20%), Positives = 119/275 (43%), Gaps = 29/275 (10%) Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114 +G + K++E + A ++ Y +EL+ + L+ + D + V+ Sbjct: 187 VGAMLEAKLLEAEFSPAVANKLAALSQHYTPAELVRALPQSLANMLDNQGDDIVKQGGVV 246 Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +VG GVGKTT + KL+ + + V L D +R A +QL + + Sbjct: 247 ALVGPTGVGKTTSLAKLAARFAAHHGAEHVALITTDHYRIGAYEQLATYGKIMGCPVKQA 306 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 ++ + Y Q + +++IDTAG + +R+ ++LD +S Sbjct: 307 HDLNELEQILY------QFRNRKLVLIDTAGMGQRD----------MRLYQQLDNLTANS 350 Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 + + + TGQ + Q V F + +G+++TK+D + G + +++ + +P+ Sbjct: 351 RIPIRSYLVLSATGQRRVLQDAVNHFKRIP-LSGVVLTKLDESVSLAGALSVLIQNGLPL 409 Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVITGCLDYGEEK 320 ++ G+ + D++ D + LD E++ Sbjct: 410 SYVTDGQRVPEDMKVADTLDLAQQALAALDSTEQQ 444 >gi|160876162|ref|YP_001555478.1| flagellar biosynthesis regulator FlhF [Shewanella baltica OS195] gi|217972631|ref|YP_002357382.1| flagellar biosynthesis regulator FlhF [Shewanella baltica OS223] gi|160861684|gb|ABX50218.1| GTP-binding signal recognition particle SRP54 G- domain [Shewanella baltica OS195] gi|217497766|gb|ACK45959.1| GTP-binding signal recognition particle SRP54 G- domain protein [Shewanella baltica OS223] gi|315268358|gb|ADT95211.1| flagellar biosynthetic protein FlhF [Shewanella baltica OS678] Length = 460 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 56/275 (20%), Positives = 119/275 (43%), Gaps = 29/275 (10%) Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114 +G + K++E + A ++ Y +EL+ + L+ + D + V+ Sbjct: 187 VGAMLEAKLLEAEFSPAVANKLAALSQHYTPAELVRALPQSLANMLDNQGDDIVKQGGVV 246 Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +VG GVGKTT + KL+ + + V L D +R A +QL + + Sbjct: 247 ALVGPTGVGKTTSLAKLAARFAAHHGAEHVALITTDHYRIGAYEQLATYGKIMGCPVKQA 306 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 ++ + Y Q + +++IDTAG + +R+ ++LD +S Sbjct: 307 HDLNELEQILY------QFRNRKLVLIDTAGMGQRD----------MRLYQQLDNLTANS 350 Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 + + + TGQ + Q V F + +G+++TK+D + G + +++ + +P+ Sbjct: 351 RIPIRSYLVLSATGQRRVLQDAVNHFKRIP-LSGVVLTKLDESVSLAGALSVLIQNGLPL 409 Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVITGCLDYGEEK 320 ++ G+ + D++ D + LD E++ Sbjct: 410 SYVTDGQRVPEDMKVADTLDLAQQALAALDSTEQQ 444 >gi|224532110|ref|ZP_03672742.1| flagellar biosynthesis protein FlhF (Flagella-associated GTP-binding protein) [Borrelia valaisiana VS116] gi|224511575|gb|EEF81981.1| flagellar biosynthesis protein FlhF (Flagella-associated GTP-binding protein) [Borrelia valaisiana VS116] Length = 388 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 29/195 (14%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAG----LKVMLAAGDTFRSAAIDQLKIWADRT 165 + V ++VG GVGKTT I KL+ G L + + D +R A Q++ + D Sbjct: 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINGESKSLNIKIITIDNYRIGAKKQIQTYGDIM 232 Query: 166 SADFVCSEIGSDAAALAYEAFKQ-----AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A E+FK +K D++++DT G+ + + +A + +++ Sbjct: 233 G-----------IPVRAIESFKDLKDEITDSKDFDLILVDTIGKSPKDFMKLAEMKELLN 281 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPI 278 R D +V +TT + ++ E+FH + +I TK+D T G LI + Sbjct: 282 ACGR-DAEFHLAV----SSTTKTSDVK--EIFHQFSPFNYKTVIFTKVDETTCVGNLISL 334 Query: 279 VVTHKIPVYFLGVGE 293 + K V ++ G+ Sbjct: 335 IYEMKKVVSYVTDGQ 349 >gi|86157783|ref|YP_464568.1| GTP-binding signal recognition particle [Anaeromyxobacter dehalogenans 2CP-C] gi|85774294|gb|ABC81131.1| GTP-binding signal recognition particle SRP54, G-domain protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 378 Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 20/217 (9%) Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL-SKKMSDAGLK 141 R V +L+ + L+P P+ D VI VG GVGKTT + K+ ++ + + + Sbjct: 160 RAWRAVKDLLGERLVPCRAPWLHDGRR---VIAAVGPTGVGKTTTLAKVAARALLETRKR 216 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 V DT+R +QL +A V + G AL + VD++++D Sbjct: 217 VAFVTVDTYRLGGAEQLTRYAGIMEVPVLVARDRGELGRAL-------ERLSDVDLVLVD 269 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAG H + + ++R + R+ H + A TG L V + Sbjct: 270 TAG--HASVEDVERQAALVRSIPRVQLH------LTVSAATGALELAAVADRYRALAPDR 321 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 L++TK+D A G ++ V P+ + G+ + + Sbjct: 322 LVLTKLDEAAGPGSVLSAAVRVCRPIACVTDGQRVPE 358 >gi|134300230|ref|YP_001113726.1| flagellar biosynthesis regulator FlhF [Desulfotomaculum reducens MI-1] gi|134052930|gb|ABO50901.1| GTP-binding signal recognition particle SRP54, G- domain protein [Desulfotomaculum reducens MI-1] Length = 405 Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 118/263 (44%), Gaps = 32/263 (12%) Query: 43 DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102 D V + + L+ DI AVA+ +++ L K KD ++ V LI++ L P Sbjct: 143 DQVYQRWLEKLLEMDIQPAVAKTLLDAALLK--IKDSEALDMVELV--LINQTAELLKAP 198 Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGK-------LSKKMSDAGLKVMLAAGDTFRSAAI 155 + + + R + +G GVGKTT + K L KK V L T+R + Sbjct: 199 YKGEKNSR--FMTFIGQPGVGKTTTLTKLATKYQLLEKK------NVALITLYTYRYGST 250 Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215 D LKI+ D + E+ L+ +A ++ K D + IDT GR NN+ + + Sbjct: 251 DHLKIYGDNLD---LPVEVVMTPTELS-QAIEKHSNK--DYIFIDTVGRSSNNTGQVLEL 304 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATT-GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274 + V+ + + + VL+A+T ++ R + F + I TK+D TA G Sbjct: 305 KSFLEVIP-----SENDIFLVLNASTKDRDLFRTIHDFR-ITSFNKFIFTKVDETATLGS 358 Query: 275 LIPIVVTHKIPVYFLGVGEGIND 297 ++ +V +P+ + G+ I D Sbjct: 359 MLNVVGKTGLPIAYYTDGQSIPD 381 >gi|114562375|ref|YP_749888.1| flagellar biosynthesis regulator FlhF [Shewanella frigidimarina NCIMB 400] gi|114333668|gb|ABI71050.1| GTP-binding signal recognition particle SRP54, G- domain [Shewanella frigidimarina NCIMB 400] Length = 461 Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust. Identities = 64/297 (21%), Positives = 128/297 (43%), Gaps = 44/297 (14%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 E ++ +R L S+ +K ++ TD + + LE LI ++ AVA K+ Sbjct: 161 EEMASLRNLLTHQVSSLMKDQKKRTDPVGAM---------LESKLIAAEFSPAVAAKLAG 211 Query: 69 ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L++ Y V+ + ++ L+ D R V+ VG GVGKTT + Sbjct: 212 --LSQHYTPADLVRALPQSLANLLDNQ--------GDDIVKRGGVVAFVGPTGVGKTTSL 261 Query: 129 GKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 K++ + + +V L D +R A +QL + + ++ + Y Sbjct: 262 AKIAARFAAHHGPEQVALITTDHYRIGAYEQLATYGKIMGCPVKQAHDLTELEQILY--- 318 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD----ATTG 242 Q + +++IDTAG + +R+ ++LD +S + + + TG Sbjct: 319 ---QFRNRKLVLIDTAGMGQRD----------MRLYQQLDNLTANSRIPIRSYLVLSATG 365 Query: 243 QNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 Q + Q VE F + G I+TK+D + G + +++ +++P+ ++ G+ + + Sbjct: 366 QRRVLQDAVEHFKRIP-LAGAILTKLDESVSIAGALSVLIQNELPLSYVTDGQRVPE 421 >gi|33601534|ref|NP_889094.1| flagellar biosynthesis protein [Bordetella bronchiseptica RB50] gi|33575970|emb|CAE33049.1| flagellar biosynthesis protein [Bordetella bronchiseptica RB50] Length = 790 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 47/198 (23%), Positives = 90/198 (45%), Gaps = 33/198 (16%) Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V +VG GVGKTT + KL+ + + +V + D FR A++QL+I+ + Sbjct: 195 VFALVGPTGVGKTTTLAKLAARCVAREGREQVAMLTTDNFRIGALEQLQIYGRLMG---I 251 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNNSILMAGIGKMIRVLKR 224 + DA L +A +++ ++IDT G ++ + ++ GK +R L Sbjct: 252 PAHSVRDADEL-RDALGSLGNRRI--ILIDTTGISQRDRQVAGQAAMLCNAGKPVRRLL- 307 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG-----TTGLIMTKMDGTARGGGLIPIV 279 VL+A + + L +V HA G I+TK+D +R + Sbjct: 308 -----------VLNAASQGDTLDEVA--HAYRNGVGEDVVGCIITKLDEASRLAPALDTA 354 Query: 280 VTHKIPVYFLGVGEGIND 297 + H++P++++ G+ + + Sbjct: 355 IRHRLPIHYVSYGQKVPE 372 >gi|111115095|ref|YP_709713.1| flagellar biosynthesis regulator FlhF [Borrelia afzelii PKo] gi|216263765|ref|ZP_03435759.1| flagellar biosynthesis protein FlhF (Flagella-associated GTP-binding protein) [Borrelia afzelii ACA-1] gi|110890369|gb|ABH01537.1| flagellar-associated GTP-binding protein [Borrelia afzelii PKo] gi|215979809|gb|EEC20631.1| flagellar biosynthesis protein FlhF (Flagella-associated GTP-binding protein) [Borrelia afzelii ACA-1] Length = 388 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 29/195 (14%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAG----LKVMLAAGDTFRSAAIDQLKIWADRT 165 + V ++VG GVGKTT I KL+ G L + + D +R A Q++ + D Sbjct: 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINGESKSLNIKIITIDNYRIGAKKQIQTYGDIM 232 Query: 166 SADFVCSEIGSDAAALAYEAFKQ-----AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A E+FK +K D++++DT G+ + + +A + +++ Sbjct: 233 G-----------IPVRAIESFKDLKDEITDSKDFDLILVDTIGKSPKDFMKLAEMKELLN 281 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPI 278 R D +V +TT + ++ E+FH + +I TK+D T G LI + Sbjct: 282 ACGR-DAEFHLAV----SSTTKTSDVK--EIFHQFSPFNYKTVIFTKVDETTCVGNLISL 334 Query: 279 VVTHKIPVYFLGVGE 293 + K V ++ G+ Sbjct: 335 IYEMKKVVSYVTDGQ 349 >gi|268553693|ref|XP_002634833.1| Hypothetical protein CBG13942 [Caenorhabditis briggsae] Length = 450 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 11/110 (10%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMP--- 98 E++ D LI ++ A+KI + +++K K V + Q V V E + ++L P Sbjct: 341 EKMRDNLIMKNVAAEPAEKICQSVVSKLEGKVVNNFSRTAQEVRTAVRESLVQLLTPKHR 400 Query: 99 ---LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 L RP+VI+ GVNGVGK+T + K++ +++ +V++A Sbjct: 401 VDILRDVIEAKKEGRPYVIVFCGVNGVGKSTNLAKITFWLTENKHRVLIA 450 >gi|1185064|gb|AAB58973.1| putative [Borrelia burgdorferi] Length = 387 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 29/195 (14%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAG----LKVMLAAGDTFRSAAIDQLKIWADRT 165 + V ++VG GVGKTT I KL+ G L + + D +R A Q++ + D Sbjct: 172 KKRVFILVGPTGVGKTTTIAKLAAIYGINGESKSLNIKIITIDNYRIGAKKQIQTYGDIM 231 Query: 166 SADFVCSEIGSDAAALAYEAFKQ-----AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A E+FK +K D++++DT G+ + + +A + +++ Sbjct: 232 G-----------IPVRAIESFKDLKDEITDSKDFDLILVDTIGKSPKDFMKLAEMKELLN 280 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPI 278 R D +V +TT + ++ E+FH + +I TK+D T G LI + Sbjct: 281 ACGR-DAEFHLAV----SSTTKTSDVK--EIFHQFSPFNYKTVIFTKVDETTCVGNLISL 333 Query: 279 VVTHKIPVYFLGVGE 293 + K V ++ G+ Sbjct: 334 IYEMKKVVSYVTDGQ 348 >gi|224534267|ref|ZP_03674845.1| flagellar biosynthesis protein FlhF [Borrelia spielmanii A14S] gi|224514369|gb|EEF84685.1| flagellar biosynthesis protein FlhF [Borrelia spielmanii A14S] Length = 388 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 29/195 (14%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAG----LKVMLAAGDTFRSAAIDQLKIWADRT 165 + V ++VG GVGKTT I KL+ G L + + D +R A Q++ + D Sbjct: 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINGESKSLNIKIITIDNYRIGAKKQIQTYGDIM 232 Query: 166 SADFVCSEIGSDAAALAYEAFKQ-----AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A E+FK +K D++++DT G+ + + +A + +++ Sbjct: 233 G-----------IPVRAIESFKDLKDEITDSKDFDLILVDTIGKSPKDFMKLAEMKELLN 281 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPI 278 R D +V +TT + ++ E+FH + +I TK+D T G LI + Sbjct: 282 ACGR-DAEFHLAV----SSTTKTSDVK--EIFHQFSPFNYKTVIFTKVDETTCVGNLISL 334 Query: 279 VVTHKIPVYFLGVGE 293 + K V ++ G+ Sbjct: 335 IYEMKKVVSYVTDGQ 349 >gi|51598530|ref|YP_072718.1| flagellar biosynthesis regulator FlhF [Borrelia garinii PBi] gi|219684695|ref|ZP_03539638.1| flagellar biosynthesis protein FlhF (Flagella-associated GTP-binding protein) [Borrelia garinii PBr] gi|219685763|ref|ZP_03540574.1| flagellar biosynthesis protein FlhF (Flagella-associated GTP-binding protein) [Borrelia garinii Far04] gi|51573101|gb|AAU07126.1| flagellar-associated GTP-binding protein [Borrelia garinii PBi] gi|219672057|gb|EED29111.1| flagellar biosynthesis protein FlhF (Flagella-associated GTP-binding protein) [Borrelia garinii PBr] gi|219672702|gb|EED29730.1| flagellar biosynthesis protein FlhF (Flagella-associated GTP-binding protein) [Borrelia garinii Far04] Length = 388 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 29/195 (14%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAG----LKVMLAAGDTFRSAAIDQLKIWADRT 165 + V ++VG GVGKTT I KL+ G L + + D +R A Q++ + D Sbjct: 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINGESKSLNIKIITIDNYRIGAKKQIQTYGDIM 232 Query: 166 SADFVCSEIGSDAAALAYEAFKQ-----AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A E+FK +K D++++DT G+ + + +A + +++ Sbjct: 233 G-----------IPVRAIESFKDLKDEITDSKDFDLILVDTIGKSPKDFMKLAEMKELLN 281 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPI 278 R D +V +TT + ++ E+FH + +I TK+D T G LI + Sbjct: 282 ACGR-DAEFHLAV----SSTTKTSDVK--EIFHQFSPFNYKTVIFTKVDETTCVGNLISL 334 Query: 279 VVTHKIPVYFLGVGE 293 + K V ++ G+ Sbjct: 335 IYEMKKVVSYVTDGQ 349 >gi|225552424|ref|ZP_03773364.1| flagellar biosynthesis protein FlhF [Borrelia sp. SV1] gi|225371422|gb|EEH00852.1| flagellar biosynthesis protein FlhF [Borrelia sp. SV1] Length = 388 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 29/195 (14%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAG----LKVMLAAGDTFRSAAIDQLKIWADRT 165 + V ++VG GVGKTT I KL+ G L + + D +R A Q++ + D Sbjct: 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINGESKSLNIKIITIDNYRIGAKKQIQTYGDIM 232 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQ-----AKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A E+FK + +K D++++DT G+ + + +A + +++ Sbjct: 233 G-----------IPVRAIESFKDLKDEITDSKDFDLILVDTIGKSPKDFMKLAEMKELLN 281 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPI 278 R D +V +TT + ++ E+FH + +I TK+D T G LI + Sbjct: 282 ACGR-DAEFHLAV----SSTTKTSDVK--EIFHQFSPFNYKTVIFTKVDETTCVGNLISL 334 Query: 279 VVTHKIPVYFLGVGE 293 + K V ++ G+ Sbjct: 335 IYEMKKVVSYVTDGQ 349 >gi|15594615|ref|NP_212404.1| flagellar biosynthesis regulator FlhF [Borrelia burgdorferi B31] gi|195941376|ref|ZP_03086758.1| flagellar biosynthesis regulator FlhF [Borrelia burgdorferi 80a] gi|216264716|ref|ZP_03436708.1| flagellar biosynthesis protein FlhF (Flagella-associated GTP-binding protein) [Borrelia burgdorferi 156a] gi|218249313|ref|YP_002374793.1| flagellar biosynthesis protein FlhF (Flagella-associated GTP-binding protein) [Borrelia burgdorferi ZS7] gi|221217685|ref|ZP_03589153.1| flagellar biosynthesis protein FlhF (Flagella-associated GTP-binding protein) [Borrelia burgdorferi 72a] gi|223888784|ref|ZP_03623375.1| flagellar biosynthesis protein FlhF (Flagella-associated GTP-binding protein) [Borrelia burgdorferi 64b] gi|224533208|ref|ZP_03673808.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi WI91-23] gi|224533859|ref|ZP_03674447.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi CA-11.2a] gi|225549184|ref|ZP_03770159.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi 94a] gi|225550144|ref|ZP_03771104.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi 118a] gi|226320570|ref|ZP_03796130.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi 29805] gi|226321588|ref|ZP_03797114.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi Bol26] gi|3913665|sp|Q44758|FLHF_BORBU RecName: Full=Flagellar biosynthesis protein flhF; AltName: Full=Flagella-associated GTP-binding protein gi|1165255|gb|AAA85594.1| FlhF [Borrelia burgdorferi] gi|2688196|gb|AAC66678.1| flagellar-associated GTP-binding protein (flhF) [Borrelia burgdorferi B31] gi|215981189|gb|EEC21996.1| flagellar biosynthesis protein FlhF (Flagella-associated GTP-binding protein) [Borrelia burgdorferi 156a] gi|218164501|gb|ACK74562.1| flagellar biosynthesis protein FlhF (Flagella-associated GTP-binding protein) [Borrelia burgdorferi ZS7] gi|221192362|gb|EEE18581.1| flagellar biosynthesis protein FlhF (Flagella-associated GTP-binding protein) [Borrelia burgdorferi 72a] gi|223885600|gb|EEF56699.1| flagellar biosynthesis protein FlhF (Flagella-associated GTP-binding protein) [Borrelia burgdorferi 64b] gi|224511935|gb|EEF82336.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi WI91-23] gi|224513152|gb|EEF83515.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi CA-11.2a] gi|225369256|gb|EEG98709.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi 118a] gi|225370410|gb|EEG99848.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi 94a] gi|226232777|gb|EEH31530.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi Bol26] gi|226233989|gb|EEH32710.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi 29805] gi|312147780|gb|ADQ30439.1| flagellar biosynthesis protein FlhF (Flagella-associated GTP-bindingprotein) [Borrelia burgdorferi JD1] gi|312149574|gb|ADQ29645.1| flagellar biosynthesis protein FlhF (Flagella-associated GTP-bindingprotein) [Borrelia burgdorferi N40] Length = 388 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 29/195 (14%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAG----LKVMLAAGDTFRSAAIDQLKIWADRT 165 + V ++VG GVGKTT I KL+ G L + + D +R A Q++ + D Sbjct: 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINGESKSLNIKIITIDNYRIGAKKQIQTYGDIM 232 Query: 166 SADFVCSEIGSDAAALAYEAFKQ-----AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 A E+FK +K D++++DT G+ + + +A + +++ Sbjct: 233 G-----------IPVRAIESFKDLKDEITDSKDFDLILVDTIGKSPKDFMKLAEMKELLN 281 Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPI 278 R D +V +TT + ++ E+FH + +I TK+D T G LI + Sbjct: 282 ACGR-DAEFHLAV----SSTTKTSDVK--EIFHQFSPFNYKTVIFTKVDETTCVGNLISL 334 Query: 279 VVTHKIPVYFLGVGE 293 + K V ++ G+ Sbjct: 335 IYEMKKVVSYVTDGQ 349 >gi|322515309|ref|ZP_08068306.1| ABC superfamily ATP binding cassette transporter, ABC protein [Actinobacillus ureae ATCC 25976] gi|322118685|gb|EFX90897.1| ABC superfamily ATP binding cassette transporter, ABC protein [Actinobacillus ureae ATCC 25976] Length = 556 Score = 43.9 bits (102), Expect = 0.029, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 95/224 (42%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG + S K + D ++S R E +L I G Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E LTK Y R L D + S P + ++ ++G N Sbjct: 320 LGDKVIEVSNLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G VM LA+ D FR + D+ +W + ++ + + Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSIVMGETVTLASVDQFRDSMDDKKTVWEEVSNGQDILTIG 419 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K V L GRLH +L G Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKHVGELSGGERGRLHLAKLLQRG 463 >gi|257058774|ref|YP_003136662.1| cobalamin synthesis protein P47K [Cyanothece sp. PCC 8802] gi|256588940|gb|ACU99826.1| cobalamin synthesis protein P47K [Cyanothece sp. PCC 8802] Length = 346 Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 22/149 (14%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRT----SA 167 V ++ G G GKTT++ + ++ LKV + + F ID QL + D S Sbjct: 22 VTIITGFLGSGKTTLLNHILT--NNQQLKVAVLVNE-FGDIDIDSQLLVSVDENMVALSN 78 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +C I + Y+ +QA K+D LI++T G I + I +R + RLD Sbjct: 79 GCICCTINDNLVEAVYQILEQA--DKIDYLILETTGVADPLPIALTFINTELRDMTRLD- 135 Query: 228 HAPHSVLQVLDATT-------GQNALRQV 249 S+L V+DA T + ALRQ+ Sbjct: 136 ----SILTVVDAETFTPEHFESEAALRQI 160 >gi|320087982|emb|CBY97744.1| Cell division protein ftsY homolog [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 305 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 2/114 (1%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 + +L + T L G + +++DD + EELE+ L+ +D+GV +KI+ L Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248 Query: 73 KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 K + LY + + + ++L + +P N + P VIL+VGVNGVGKT Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKT 301 >gi|218245728|ref|YP_002371099.1| cobalamin synthesis protein P47K [Cyanothece sp. PCC 8801] gi|218166206|gb|ACK64943.1| cobalamin synthesis protein P47K [Cyanothece sp. PCC 8801] Length = 346 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 22/149 (14%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRT----SA 167 V ++ G G GKTT++ + ++ LKV + + F ID QL + D S Sbjct: 22 VTIITGFLGSGKTTLLNHILT--NNQQLKVAVLVNE-FGDIDIDSQLLVSVDENMVALSN 78 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +C I + Y+ +QA K+D LI++T G I + I +R + RLD Sbjct: 79 GCICCTINDNLVEAVYQILEQA--DKIDYLILETTGVADPLPIALTFINTELRDMTRLD- 135 Query: 228 HAPHSVLQVLDATT-------GQNALRQV 249 S+L V+DA T + ALRQ+ Sbjct: 136 ----SILTVVDAETFTPEHFESEAALRQI 160 >gi|30250408|ref|NP_842478.1| flagellar biosynthesis regulator FlhF [Nitrosomonas europaea ATCC 19718] gi|30181203|emb|CAD86401.1| possible flhF; flagellar biosynthetic protein FlhF [Nitrosomonas europaea ATCC 19718] Length = 419 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 14/184 (7%) Query: 116 VVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 ++G GVGKTT KL+ + + KV L D++R +QL+I+ + Sbjct: 190 LIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGISVRSIK 249 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 D + +E + +++IDT G + +L + I +L + H + Sbjct: 250 DIDDLQLMLHE------LRGKHMVLIDTVGMSQRDQML----AEQITMLSQCGTEVKHLL 299 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 L L+AT+ + L +V + G G I+TK+D A G + V+ K+ ++++ G+ Sbjct: 300 L--LNATSSGDTLDEVISAYQQHGIHGCIITKVDEAASLGIALDAVIRRKLVLHYVTNGQ 357 Query: 294 GIND 297 + + Sbjct: 358 KVPE 361 >gi|302807387|ref|XP_002985388.1| hypothetical protein SELMODRAFT_122109 [Selaginella moellendorffii] gi|300146851|gb|EFJ13518.1| hypothetical protein SELMODRAFT_122109 [Selaginella moellendorffii] Length = 157 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 16/78 (20%) Query: 254 AVAGTTGLIMTKMDGTA----------------RGGGLIPIVVTHKIPVYFLGVGEGIND 297 AVA LI+ MDG++ +GGG + V K P+ FLG GE +ND Sbjct: 35 AVATKPDLIVFVMDGSSSCVQGECPSWRCYHHGKGGGTLRAVAATKSPIIFLGTGERLND 94 Query: 298 LEPFVAKDFSAVITGCLD 315 LE F ++ F+ + G D Sbjct: 95 LEVFESRSFANKLLGMAD 112 >gi|257095370|ref|YP_003169011.1| flagellar biosynthesis regulator FlhF [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047894|gb|ACV37082.1| GTP-binding signal recognition particle SRP54 G- domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 458 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 87/199 (43%), Gaps = 26/199 (13%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V +VG GVGKTT KL+ + + K+ L D +R A +QL+I+ Sbjct: 229 DIVDRGGVYALVGPTGVGKTTTTAKLAARCVLRHGARKLALVTTDGYRIGAHEQLRIYGR 288 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG-----RLHNNSILMAGIGKM 218 V + DA L Q K + ++IDT G RL + + M G K+ Sbjct: 289 ILG---VSVHLARDAEDL-RTTLTDLQHKHM--VLIDTMGMSQRDRLVSEQVAMFGDSKV 342 Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +L +L AT+G + L V ++ G I+TK+D A + + Sbjct: 343 KSLL-------------LLSATSGGDTLDDVVRAYSGLHLAGCILTKVDEAAGLAASLDV 389 Query: 279 VVTHKIPVYFLGVGEGIND 297 ++ ++ ++++ G+ + + Sbjct: 390 IIRQRLRLFYVSNGQRVPE 408 >gi|254517022|ref|ZP_05129080.1| flagellar biosynthesis protein [gamma proteobacterium NOR5-3] gi|219674527|gb|EED30895.1| flagellar biosynthesis protein [gamma proteobacterium NOR5-3] Length = 362 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 27/193 (13%) Query: 113 VILVVGVNGVGKTTVIGKLS-KKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFV 170 + V G GVGKT+ + +L+ + G +++ L D +R A +QL +AD Sbjct: 155 ITAVYGGTGVGKTSTVARLAGADIQRLGPEMVGLITLDNYRIGAQEQLASFADTLGIPLF 214 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNNSILMAGIGKMIRVLKR 224 + +D +L+ A ++ Q +++ IDTAG RL L++ + K +R L Sbjct: 215 TA---NDRQSLSL-ALQKMQGRRI---YIDTAGMSQHDARLRGQYALISELRKPVRHLLV 267 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 L A S + L A AL +G I++K+D GG++ +V++ + Sbjct: 268 LAASAQASQCRALAANFSPRAL------------SGAIISKVDEAQSLGGVLDVVISAGL 315 Query: 285 PVYFLGVGEGIND 297 PV G+ I D Sbjct: 316 PVLAYSSGQRIPD 328 >gi|172036415|ref|YP_001802916.1| hypothetical protein cce_1500 [Cyanothece sp. ATCC 51142] gi|171697869|gb|ACB50850.1| hypothetical protein cce_1500 [Cyanothece sp. ATCC 51142] Length = 341 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 23/171 (13%) Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 + + +P P N P V ++ G G GKTT++ + ++ LKV + + F Sbjct: 1 MTQTLSVPNKSPLNLPKQGMP-VTIITGFLGSGKTTLVNHILT--NNQQLKVAVLVNE-F 56 Query: 151 RSAAID-QLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 ID QL + D S +C I D Y+ +Q +D LI++T G Sbjct: 57 GDIDIDSQLLVSIDENMVALSNGCICCTINDDLVEAVYQVLEQG--DNIDYLILETTGVA 114 Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT-------GQNALRQV 249 I + + +R + RLD S+L V+DA T + ALRQ+ Sbjct: 115 DPLPIALTFLNTELRDMTRLD-----SILTVVDAETFTSEHSQSEAALRQI 160 >gi|313610161|gb|EFR85466.1| flagellar biosynthesis protein FlhF [Listeria monocytogenes FSL F2-208] Length = 279 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 3/70 (4%) Query: 104 NWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 ++D S HR +I ++G GVGKTT + KL ++ V DTFRS A++Q + +A Sbjct: 200 SFDLSNHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYA 257 Query: 163 DRTSADFVCS 172 D+ + + + Sbjct: 258 DKLDVELIVA 267 >gi|149376627|ref|ZP_01894387.1| Flagellar GTP-binding protein [Marinobacter algicola DG893] gi|149359145|gb|EDM47609.1| Flagellar GTP-binding protein [Marinobacter algicola DG893] Length = 431 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 89/215 (41%), Gaps = 36/215 (16%) Query: 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFR 151 KML K +++ V +VG G GKTT IGKL+ + + L D +R Sbjct: 209 KMLAAGVKTARTEWADEGGVYALVGPTGSGKTTTIGKLAAHYVLRHGADSLALVTTDRYR 268 Query: 152 SAAIDQLKIWA----------DRT-SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 AA +QL ++ D T S D + E+ SD +++ID Sbjct: 269 VAAHEQLFVFGRILNVPVRVVDETHSLDDILDEL-SDR----------------HLVLID 311 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAG + + ++ R R+ H V+ AT+ ++ V + +A TG Sbjct: 312 TAGLTSTDKGYEEQLMELARSHHRIRTHL------VVSATSQPRIMKSVWHCYKMANLTG 365 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 +MTK+D G + V+ +PV + G+ I Sbjct: 366 CVMTKIDEALTLGESLGFVMETGLPVAYYTDGQKI 400 >gi|113969640|ref|YP_733433.1| flagellar biosynthesis regulator FlhF [Shewanella sp. MR-4] gi|113884324|gb|ABI38376.1| GTP-binding signal recognition particle SRP54, G- domain [Shewanella sp. MR-4] Length = 458 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 51/249 (20%), Positives = 109/249 (43%), Gaps = 28/249 (11%) Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114 +G + K++E + A ++ Y +EL+ + L+ + D + V+ Sbjct: 185 VGAMLESKLLEAEFSPAVANKLAALSQHYTPAELVRALPQSLANMLDNQGDDIVKQGGVV 244 Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +VG GVGKTT + KL+ + + +V L D +R A +QL + + Sbjct: 245 ALVGPTGVGKTTSLAKLAARFAAHHGADQVALITTDHYRIGAYEQLATYGKIMGCPVKQA 304 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 ++ + Y Q + +++IDTAG + +R+ ++LD +S Sbjct: 305 HDLAELEQILY------QFRNRKLVLIDTAGMGQRD----------MRLYQQLDNLTANS 348 Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 + + + TGQ + Q V F + +G+++TK+D + G + +++ +P+ Sbjct: 349 RIPIRSYLVLSATGQRRVLQDAVNHFKRIP-LSGVVLTKLDESVSLAGALSVLIQSGLPL 407 Query: 287 YFLGVGEGI 295 ++ G+ + Sbjct: 408 SYVTDGQRV 416 >gi|114046870|ref|YP_737420.1| flagellar biosynthesis regulator FlhF [Shewanella sp. MR-7] gi|113888312|gb|ABI42363.1| GTP-binding signal recognition particle SRP54, G- domain [Shewanella sp. MR-7] Length = 458 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 51/249 (20%), Positives = 109/249 (43%), Gaps = 28/249 (11%) Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114 +G + K++E + A ++ Y +EL+ + L+ + D + V+ Sbjct: 185 VGAMLESKLLEAEFSPAVANKLAALSQHYTPAELVRALPQSLANMLDNQGDDIVKQGGVV 244 Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +VG GVGKTT + KL+ + + +V L D +R A +QL + + Sbjct: 245 ALVGPTGVGKTTSLAKLAARFAAHHGADQVALITTDHYRIGAYEQLATYGKIMGCPVKQA 304 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 ++ + Y Q + +++IDTAG + +R+ ++LD +S Sbjct: 305 HDLAELEQILY------QFRNRKLVLIDTAGMGQRD----------MRLYQQLDNLTANS 348 Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 + + + TGQ + Q V F + +G+++TK+D + G + +++ +P+ Sbjct: 349 RIPIRSYLVLSATGQRRVLQDAVNHFKRIP-LSGVVLTKLDESVSLAGALSVLIQSGLPL 407 Query: 287 YFLGVGEGI 295 ++ G+ + Sbjct: 408 SYVTDGQRV 416 >gi|24374724|ref|NP_718767.1| flagellar biosynthesis regulator FlhF [Shewanella oneidensis MR-1] gi|24349384|gb|AAN56211.1|AE015759_3 flagellar biosynthetic protein FlhF [Shewanella oneidensis MR-1] Length = 458 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 51/249 (20%), Positives = 109/249 (43%), Gaps = 28/249 (11%) Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114 +G + K++E + A ++ Y +EL+ + L+ + D + V+ Sbjct: 185 VGAMLESKLLEAEFSPAVASKLAALSQHYTPAELVRALPQSLANMLDNQGDDIVKQGGVV 244 Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +VG GVGKTT + KL+ + + +V L D +R A +QL + + Sbjct: 245 ALVGPTGVGKTTSLAKLAARFAAHHGADQVALITTDHYRIGAYEQLATYGKIMGCPVKQA 304 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 ++ + Y Q + +++IDTAG + +R+ ++LD +S Sbjct: 305 HDLAELEQILY------QFRNRKLVLIDTAGMGQRD----------MRLYQQLDNLTANS 348 Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 + + + TGQ + Q V F + +G+++TK+D + G + +++ +P+ Sbjct: 349 RIPIRSYLVLSATGQRRVLQDAVNHFKRIP-LSGVVLTKLDESVSLAGALSVLIQSGLPL 407 Query: 287 YFLGVGEGI 295 ++ G+ + Sbjct: 408 SYVTDGQRV 416 >gi|75812510|ref|YP_320129.1| cobalamin synthesis protein/P47K [Anabaena variabilis ATCC 29413] gi|75705266|gb|ABA24940.1| Cobalamin synthesis protein/P47K [Anabaena variabilis ATCC 29413] Length = 353 Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 20/150 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169 V ++ G G GKTT++ ++ K D + V++ + F ID QL I D + Sbjct: 22 VTIITGFLGSGKTTLLNQILKNKQDLKVAVLV---NEFGDINIDSQLLISVDEDMVELTN 78 Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +C I + Y ++ ++D L+I+T G I++ +G +R L LD Sbjct: 79 GCICCTINDNLVDAVYRVLERED--RIDYLVIETTGVADPLPIILTFLGTELRDLTNLD- 135 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAG 257 S+L V+DA A + E FH+ A Sbjct: 136 ----SILTVVDA----EAFNE-EHFHSEAA 156 >gi|293390332|ref|ZP_06634666.1| ABC transporter domain protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950866|gb|EFE00985.1| ABC transporter domain protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 548 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 97/229 (42%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG + S ++ S R E +L I G Sbjct: 257 ARQKSIEKELEWVRQNPKGRQAKSKARMARFEELNSGEYQK---RNETNELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + +K++E + L+K Y R L D + S P + ++ ++G N Sbjct: 312 LGEKVIEVQHLSKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 351 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS K+ D+G V+LA+ FR A ++ +W + ++ + + Sbjct: 352 GAGKSTLFRMLSGKEKPDSGTITLGETVVLASVYQFRDAMDEKKTVWEEVSNGQDILTIG 411 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 EI S A + Q K+V L GRLH +L AG G M+ Sbjct: 412 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQAG-GNML 459 >gi|261868255|ref|YP_003256177.1| putative ABC transporter ATP-binding protein [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413587|gb|ACX82958.1| ABC transporter domain protein [Aggregatibacter actinomycetemcomitans D11S-1] Length = 548 Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 97/229 (42%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG + S ++ S R E +L I G Sbjct: 257 ARQKSIEKELEWVRQNPKGRQAKSKARMARFEELNSGEYQK---RNETNELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + +K++E + L+K Y R L D + S P + ++ ++G N Sbjct: 312 LGEKVIEVQHLSKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 351 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS K+ D+G V+LA+ FR A ++ +W + ++ + + Sbjct: 352 GAGKSTLFRMLSGKEKPDSGTITLGETVVLASVYQFRDAMDEKKTVWEEVSNGQDILTIG 411 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 EI S A + Q K+V L GRLH +L AG G M+ Sbjct: 412 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQAG-GNML 459 >gi|323703186|ref|ZP_08114839.1| flagellar biosynthetic protein FlhF [Desulfotomaculum nigrificans DSM 574] gi|323531845|gb|EGB21731.1| flagellar biosynthetic protein FlhF [Desulfotomaculum nigrificans DSM 574] Length = 434 Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 25/211 (11%) Query: 117 VGVNGVGKTTVIGK-------LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 VG GVGKTT + K L KK KV L T+R + DQLKI+ + Sbjct: 238 VGPPGVGKTTTLTKLATKFKLLEKK------KVALITVYTYRYGSADQLKIYGETLD--- 288 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 V E+ A L +A +Q K D ++IDT GR N+ + + + V+ P Sbjct: 289 VPVEVVMTPAELR-QAVEQHADK--DHILIDTVGRTSKNTGQVLELKGFLEVI----PEQ 341 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 L + +T ++ R + F +A I TK D T G ++ +V +P+ + Sbjct: 342 QDIFLVLAASTKDRDLFRTIRDFR-IAHFNKFIFTKTDETETLGSMLNVVSRTGLPIAYY 400 Query: 290 GVGEGI-NDLEPFVAKDFSAVITGCLDYGEE 319 G+ I +DLE K + ++ D EE Sbjct: 401 TDGQSIPDDLEKAYPKKLAHLLFRSADRYEE 431 >gi|117919805|ref|YP_868997.1| flagellar biosynthesis regulator FlhF [Shewanella sp. ANA-3] gi|117612137|gb|ABK47591.1| GTP-binding signal recognition particle SRP54, G- domain [Shewanella sp. ANA-3] Length = 458 Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust. Identities = 51/251 (20%), Positives = 110/251 (43%), Gaps = 28/251 (11%) Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114 +G + K++E + A ++ Y +EL+ + L+ + D + V+ Sbjct: 185 VGAMLESKLLEAEFSPAVANKLAALSQHYTPAELVRALPQSLANMLDNQGDDIVKQGGVV 244 Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +VG GVGKTT + KL+ + + +V L D +R A +QL + + Sbjct: 245 ALVGPTGVGKTTSLAKLAARFAAHHGADQVALITTDHYRIGAYEQLATYGKIMGCPVKQA 304 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 ++ + Y Q + +++IDTAG + +R+ ++LD +S Sbjct: 305 HDLAELEQILY------QFRNRKLVLIDTAGMGQRD----------MRLYQQLDNLTANS 348 Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 + + + TGQ + Q V F + +G+++TK+D + G + +++ +P+ Sbjct: 349 RIPIRSYLVLSATGQRRVLQDAVNHFKRIP-LSGVVLTKLDESVSLAGALSVLIQSGLPL 407 Query: 287 YFLGVGEGIND 297 ++ G+ + + Sbjct: 408 SYVTDGQRVPE 418 >gi|315639131|ref|ZP_07894297.1| DNA repair protein RadA [Campylobacter upsaliensis JV21] gi|315480768|gb|EFU71406.1| DNA repair protein RadA [Campylobacter upsaliensis JV21] Length = 446 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 60/106 (56%), Gaps = 14/106 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168 +IL+ G GVGK+T++ K++ ++ G KV+ +G+ ++ Q+K+ ADR A+ Sbjct: 91 LILIGGSPGVGKSTLLLKIASNLAQKGKKVLYVSGEESKT----QIKLRADRLEANSPNL 146 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 F+ +E+ + +A E +KQ + LIID+ L+++ I A Sbjct: 147 FLLTELCFE--NIAEELYKQ----DYEFLIIDSIQTLYSSKIASAA 186 >gi|288960023|ref|YP_003450363.1| flagellar biosynthesis protein [Azospirillum sp. B510] gi|288912331|dbj|BAI73819.1| flagellar biosynthesis protein [Azospirillum sp. B510] Length = 429 Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 83/196 (42%), Gaps = 23/196 (11%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 + +VG G GKT V KL+ + V + DT R+ +DQL + E Sbjct: 136 LALVGPPGSGKTLVAAKLAARAVFRKCSVGVITTDTVRAGGVDQLAAFTRLMKLKLATVE 195 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 DA A A+E ++ D++++DTAGR ++ M + M+ A V Sbjct: 196 -DPDALAGAFEVH-----RRTDLVLVDTAGRNPFDADDMQDLRTML---------AAGEV 240 Query: 234 LQVLDATTGQNALRQVEM---FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 VL G +AL +M F AV G +++T++D R G ++ I ++ Sbjct: 241 EPVLVLPAGLDALEAADMALAFKAV-GVRRMLVTRLDMARRLGSVLAIAARARLSFCDAS 299 Query: 291 ----VGEGINDLEPFV 302 V EG+ L P Sbjct: 300 ISSKVAEGLTALNPLA 315 >gi|91792699|ref|YP_562350.1| flagellar biosynthesis regulator FlhF [Shewanella denitrificans OS217] gi|91714701|gb|ABE54627.1| GTP-binding signal recognition particle SRP54, G-domain [Shewanella denitrificans OS217] Length = 462 Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust. Identities = 43/199 (21%), Positives = 88/199 (44%), Gaps = 23/199 (11%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V+ VG GVGKTT + KL+ + + +V L D +R A +QL + Sbjct: 240 DIVRRGGVVAFVGPTGVGKTTSLAKLAARFAAQHGPEQVALITTDHYRIGAFEQLATYGK 299 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + ++ + Y Q + +++IDTAG + +R+ + Sbjct: 300 IMGCPVKQAHDLAELEQIIY------QFRNRKLVLIDTAGMGQRD----------MRLYQ 343 Query: 224 RLDPHAPHSVLQ-----VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278 +LD +S + VL AT + L+ +G+++TK+D + G + + Sbjct: 344 QLDNLTANSKIPIRSYLVLSATGQRRVLQDAVTHFKRIPLSGVVLTKLDESVSIAGALSV 403 Query: 279 VVTHKIPVYFLGVGEGIND 297 ++ +++P+ ++ G+ + + Sbjct: 404 LIQNELPLSYVTDGQRVPE 422 >gi|57505626|ref|ZP_00371553.1| DNA repair protein RadA [Campylobacter upsaliensis RM3195] gi|57016173|gb|EAL52960.1| DNA repair protein RadA [Campylobacter upsaliensis RM3195] Length = 446 Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 60/106 (56%), Gaps = 14/106 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168 +IL+ G GVGK+T++ K++ ++ G KV+ +G+ ++ Q+K+ ADR A+ Sbjct: 91 LILIGGSPGVGKSTLLLKIASNLAQKGKKVLYVSGEESKT----QIKLRADRLEANSPNL 146 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 F+ +E+ + +A E +KQ + LIID+ L+++ I A Sbjct: 147 FLLTELCFE--NIAEELYKQ----DYEFLIIDSIQTLYSSKIASAA 186 >gi|224826339|ref|ZP_03699441.1| GTP-binding signal recognition particle SRP54 G- domain [Lutiella nitroferrum 2002] gi|224601440|gb|EEG07621.1| GTP-binding signal recognition particle SRP54 G- domain [Lutiella nitroferrum 2002] Length = 479 Score = 42.7 bits (99), Expect = 0.063, Method: Compositional matrix adjust. Identities = 55/260 (21%), Positives = 115/260 (44%), Gaps = 43/260 (16%) Query: 53 LIRSDIGVAVAQKIVEELLTK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109 L + + V ++ ++ +L+ K +Y +V+++ + S L+H + + + D Sbjct: 206 LFKHLLSVGLSATLIRQLIDKMPAQYQGEVTLK---WARSALMHNLKCADA---DRDVME 259 Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 R + +VG GVGKTT + KL+ + M V L D++R A DQL+I+ Sbjct: 260 RGGIYALVGPTGVGKTTTVAKLAARATMKFGAQHVALITTDSYRIGAQDQLRIYG----- 314 Query: 168 DFVCSEIGSDAAALAYEAFKQ---AQAKKVDVLIIDTAG------RLHNNSILMAGIGKM 218 +G ++ E+ Q A ++ IDT G R+ + + G G+ Sbjct: 315 ----KILGVPVYSIQNESELQLTLADLASRHIVFIDTVGMGQRDARVAAQTQMFDGTGRE 370 Query: 219 I-RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277 I R+L ++ A + L V + G G I++K+D + G + Sbjct: 371 IQRIL-------------LMAANADGHTLEDVVRHYRGHGLAGCILSKIDESVAMGPSLD 417 Query: 278 IVVTHKIPVYFLGVGEGIND 297 +++ +++ ++++ G+ + + Sbjct: 418 VIIRNRLKMFYITNGQRVPE 437 >gi|163750534|ref|ZP_02157772.1| flagellar biosynthesis protein [Shewanella benthica KT99] gi|161329689|gb|EDQ00678.1| flagellar biosynthesis protein [Shewanella benthica KT99] Length = 463 Score = 42.7 bits (99), Expect = 0.066, Method: Compositional matrix adjust. Identities = 70/312 (22%), Positives = 139/312 (44%), Gaps = 35/312 (11%) Query: 2 SNQKVASESLSWIRKL---TKGFASTSLKL-KEGITDIISSRRLDDGVREELEDLLIRSD 57 S+ K A E+ + K TKG AS L++ +E + + S L V + + R D Sbjct: 133 SSAKSAPETAHYSNKPSAETKGKASPELEMMREELASLRS--LLTHQVTALMSEQKSRLD 190 Query: 58 -IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHV 113 +G + K++E + AK +S Y ++L+ + L+ + D + V Sbjct: 191 PVGAMLESKLLEAEFSPTLAKKLSELSEHYTPADLVRALPRSLANMLDNQGDDIVRQGGV 250 Query: 114 ILVVGVNGVGKTTVIGKLSKKM-SDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 + VG GVGKTT + K++ + + G++ V L D +R A +QL + Sbjct: 251 VAFVGPTGVGKTTTLAKIAARYAAHHGVEHVALVTTDHYRIGAFEQLATYGKIMGCPVKQ 310 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231 + ++ + Y Q + +++IDTAG ++ R+ ++LD A + Sbjct: 311 AHDLNELEQILY------QFRNRKLVLIDTAGMGQRDT----------RLFQQLDNLAAN 354 Query: 232 SVLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 S L + ++TGQ + + V F + +G I+TK+D + + +++ +P Sbjct: 355 SRLPIRSYLVLSSTGQRRVLEEAVTQFSRIP-LSGAILTKLDESVSLAPALSVLIQSGLP 413 Query: 286 VYFLGVGEGIND 297 + ++ G+ + + Sbjct: 414 LSYVTDGQRVPE 425 >gi|157961204|ref|YP_001501238.1| flagellar biosynthesis regulator FlhF [Shewanella pealeana ATCC 700345] gi|157846204|gb|ABV86703.1| GTP-binding signal recognition particle SRP54 G- domain [Shewanella pealeana ATCC 700345] Length = 470 Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust. Identities = 52/251 (20%), Positives = 109/251 (43%), Gaps = 28/251 (11%) Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114 +G + K+++ + AK +S Y +EL+ + L+ + D + V+ Sbjct: 197 VGAMLESKLLDAEFSPAIAKKLSSLSEHYSPAELVASLPRSLANMLDNQGDDIVRQGGVV 256 Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 VG GVGKTT + KL+ + + +V L D +R A +QL + + Sbjct: 257 AFVGPTGVGKTTTVAKLAARFAAYHGSDQVALITTDHYRIGAFEQLATYGKIMGCPVKQA 316 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 ++ + Y Q + +++IDTAG + R+ ++LD A +S Sbjct: 317 HDFNELEQILY------QFRNRKLVLIDTAGMGQRDQ----------RLFQQLDSLAANS 360 Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 L + + TGQ + + V+ F + +G ++TK+D + + +++ +P+ Sbjct: 361 RLPIRSYLVMSATGQRRVLEDAVKQFTRIP-LSGAVLTKLDESISLAPALSVLIQSGLPL 419 Query: 287 YFLGVGEGIND 297 ++ G+ + + Sbjct: 420 SYVTDGQRVPE 430 >gi|212709098|ref|ZP_03317226.1| hypothetical protein PROVALCAL_00131 [Providencia alcalifaciens DSM 30120] gi|212688010|gb|EEB47538.1| hypothetical protein PROVALCAL_00131 [Providencia alcalifaciens DSM 30120] Length = 548 Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L WIR+ KG S K K + ++ R E +L I G Sbjct: 257 ARRKSIEKELEWIRQNPKGRQS---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E E L+K Y RVL D N +FS + ++ ++G Sbjct: 312 LGDKVIEVENLSKSYG-----DRVLID----------------NLNFSIPKGAIVGIIGP 350 Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172 NG GK+T+ +S ++ D+G V +A+ D FR A D +W + ++ + Sbjct: 351 NGAGKSTLFRMISGQEQPDSGSITLGDTVKIASVDQFRDAMDDSKTVWEEISNGQDIMRI 410 Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 411 GNFEIPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 455 >gi|91776298|ref|YP_546054.1| flagellar biosynthesis regulator FlhF [Methylobacillus flagellatus KT] gi|91710285|gb|ABE50213.1| GTP-binding signal recognition particle SRP54, G-domain [Methylobacillus flagellatus KT] Length = 536 Score = 42.7 bits (99), Expect = 0.074, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 14/187 (7%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 + +VG GVGKTT KL+ + M K+ L D++R +QL+I+ V Sbjct: 241 IYALVGPTGVGKTTTTAKLAARFVMKHGPRKLALITTDSYRIGGHEQLRIYGKILG---V 297 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 D A L A + + K ++IDT G + + + + I +L + P Sbjct: 298 MVHAVKDEADLRI-ALNELKGK--HTILIDTVGVSQRDRM----VAEQIAMLSKTG--LP 348 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 + ++AT+ L V + G G I+TK+D A G ++ I++ ++ +Y++ Sbjct: 349 IKKILCMNATSSGETLVDVMDVYKRYGLDGGIITKLDEAASIGSVLDIIIRERLKLYYVA 408 Query: 291 VGEGIND 297 G+ + + Sbjct: 409 NGQRVPE 415 >gi|113869308|ref|YP_727797.1| putative ABC transporter ATP-binding protein [Ralstonia eutropha H16] gi|113528084|emb|CAJ94429.1| ABC-type transporter, duplicated ATPase domains:Drug RA1 family [Ralstonia eutropha H16] Length = 555 Score = 42.7 bits (99), Expect = 0.077, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 97/228 (42%), Gaps = 44/228 (19%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG + S K + D ++S+ D R E +++ I +G Sbjct: 264 ARQKALHKELEWVRQNPKGRQAKS-KARLARFDELNSQ--DYQKRNETQEIFI--PVGER 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGV 119 + +++E + ++K Y R+L D N F P I+ ++G Sbjct: 319 LGNEVIEFDGVSKGYG-----DRLLID----------------NLSFKVPPGAIVGIIGP 357 Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 NG GK+T L+ K+ D+G + G T + A +DQ + D T F GSD Sbjct: 358 NGAGKSTFFRMLTGKEQPDSG---EIKIGPTVKMAFVDQSRDALDGTKTVFEEISGGSDI 414 Query: 179 AALA-YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214 + YE +A Q K+V L GRLH L+AG Sbjct: 415 LTVGRYETPSRAYIGRFNFKGGDQQKQVGTLSGGERGRLHMAKTLIAG 462 >gi|297538884|ref|YP_003674653.1| flagellar biosynthetic protein FlhF [Methylotenera sp. 301] gi|297258231|gb|ADI30076.1| flagellar biosynthetic protein FlhF [Methylotenera sp. 301] Length = 495 Score = 42.7 bits (99), Expect = 0.079, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 20/188 (10%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 + ++G GVGKTT KL+ + M + + D +R +QL+I+ Sbjct: 267 IFALIGPTGVGKTTTTAKLAARYVMKHGTENLGIITTDAYRIGGHEQLRIYGKI------ 320 Query: 171 CSEIGSDAAALAYEA-FKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +G A+ EA K A + K ++IDT G + ++ I + Sbjct: 321 ---LGVMVHAVKDEADLKIALNELKNKHTVLIDTVGVSQRDRMVAEQIAMLSST------ 371 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 + P L L+AT+ L V + G G I+TK+D A G + +V+ K+ +Y Sbjct: 372 NMPVKKLLCLNATSTGETLTDVIKAYKRKGLEGCIITKLDEAATIGNALDVVIREKLKLY 431 Query: 288 FLGVGEGI 295 ++ G+ + Sbjct: 432 YVANGQRV 439 >gi|212634382|ref|YP_002310907.1| flagellar biosynthesis regulator FlhF [Shewanella piezotolerans WP3] gi|212555866|gb|ACJ28320.1| GTP-binding signal recognition particle SRP54, G-domain protein [Shewanella piezotolerans WP3] Length = 455 Score = 42.7 bits (99), Expect = 0.079, Method: Compositional matrix adjust. Identities = 51/251 (20%), Positives = 109/251 (43%), Gaps = 28/251 (11%) Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114 +G + K++E + AK +S Y +EL+ + L+ + D + V+ Sbjct: 182 VGAMLESKLLEAEFSPAVAKKLSNLSEHYSPAELVASLPRSLANMLDNQGDDIVRQGGVV 241 Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 VG GVGKTT + KL+ + + +V L D +R A +QL + + Sbjct: 242 AFVGPTGVGKTTTVAKLAARFAAHHGSDQVALITTDHYRIGAFEQLATYGKIMGCPVKQA 301 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 ++ + Y Q + +++IDTAG + +R+ ++LD +S Sbjct: 302 HDFNELEQILY------QFRNRKLVLIDTAGMGQRD----------LRLFQQLDNLTANS 345 Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 + + + TGQ + + V+ F + +G ++TK+D + + +++ +P+ Sbjct: 346 AIPIRSYLVMSATGQRRVLEDAVKQFTRIP-LSGAVLTKLDESVSLAPALSVLIQSGLPL 404 Query: 287 YFLGVGEGIND 297 ++ G+ + + Sbjct: 405 SYVTDGQRVPE 415 >gi|325188163|emb|CCA22704.1| conserved hypothetical protein [Albugo laibachii Nc14] Length = 1077 Score = 42.4 bits (98), Expect = 0.094, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 15/104 (14%) Query: 59 GVAVAQKIVEELLTKRYAKDVSVQRV------LYD------VSELIHKMLMPLSKPFNWD 106 G +QK+V+E+L Y V+ V L D LI +ML + N Sbjct: 147 GSTTSQKLVQEILLPHYDAKPEVETVCTSPQSLLDSIKDNRTRNLISEMLQVTNDAEN-- 204 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 HRP +I++ G+ G GK+TV +LS+ + KV + + D + Sbjct: 205 -DHRPWIIILRGIPGSGKSTVARQLSRILPQIHWKVSICSADLY 247 >gi|330791563|ref|XP_003283862.1| hypothetical protein DICPUDRAFT_147576 [Dictyostelium purpureum] gi|325086248|gb|EGC39641.1| hypothetical protein DICPUDRAFT_147576 [Dictyostelium purpureum] Length = 412 Score = 42.4 bits (98), Expect = 0.095, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 15/116 (12%) Query: 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 LI L P+SK N F+ R L+ G++GVGKTT++ K A G+ Sbjct: 211 LIKYFLKPISKLPNL-FTRREFKTLMYGLDGVGKTTMLYK-------------FARGENV 256 Query: 151 RSAAIDQLKIW-ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 R+ + + + S DF+C +IG + + Q + + IID+ R+ Sbjct: 257 RTLHTNGYNVEVVEYKSCDFICWDIGFEQNPIVPVWHHYLQDTQAIIFIIDSTDRV 312 >gi|319427056|gb|ADV55130.1| flagellar biosynthetic protein FlhF [Shewanella putrefaciens 200] Length = 460 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 53/255 (20%), Positives = 112/255 (43%), Gaps = 29/255 (11%) Query: 55 RSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHR 110 R+D +G + K++E + A ++ Y +EL+ + L+ + D + Sbjct: 183 RTDPVGAMLESKLLEAEFSPAVAAKLAALSQHYTPAELVRALPQSLANMLDNQGDDIVRQ 242 Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 V+ +VG GVGKTT + KL+ + + +V L D +R A +QL + Sbjct: 243 GGVVALVGPTGVGKTTSLAKLAARFAAHHGPEQVALITTDHYRIGAYEQLATYGKIMGCP 302 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + ++ + Y Q + +++IDTAG + +R+ ++LD Sbjct: 303 VKQAHDLNELEQILY------QFRNRKLVLIDTAGMGQRD----------MRLYQQLDNL 346 Query: 229 APHSVLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 +S + + + TGQ + Q V F + +G ++TK+D + G + +++ Sbjct: 347 TANSRIPIRSYLVLSATGQRRVLQDAVNHFKRIP-LSGAVLTKLDESVSLAGALSVLIQS 405 Query: 283 KIPVYFLGVGEGIND 297 +P+ ++ G+ + + Sbjct: 406 GLPLSYVTDGQRVPE 420 >gi|239816653|ref|YP_002945563.1| ABC transporter ATP-binding protein [Variovorax paradoxus S110] gi|239803230|gb|ACS20297.1| ABC transporter related [Variovorax paradoxus S110] Length = 553 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 27/171 (15%) Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPF-------NWDFSHRPHVIL-V 116 EEL Y K Q + V+E + + + SK F N F+ P I+ + Sbjct: 294 EELSDMEYQKRNETQEIFIPVAERLGQQVFEFHNVSKSFGDRMLIDNLSFTVPPGAIVGI 353 Query: 117 VGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSA 167 +G NG GK+T+ L+ K+ D+G V+ G T + A +DQ + +W D ++ Sbjct: 354 IGPNGAGKSTLFKLLAGKEKPDSGEVVI---GQTVKMAFVDQHRDELANNKTVWEDISNG 410 Query: 168 DFVCS----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 + + ++ S A A + Q KKV L GRLH L+AG Sbjct: 411 LDIINVGKFQMASRAYAGRFNFNGADQQKKVGTLSGGERGRLHLAKTLIAG 461 >gi|86151058|ref|ZP_01069274.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni 260.94] gi|315124671|ref|YP_004066675.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85842228|gb|EAQ59474.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni 260.94] gi|315018393|gb|ADT66486.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 446 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 57/105 (54%), Gaps = 14/105 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168 ++L+ G GVGK+T++ K++ ++ G KV+ +G+ ++ Q+K+ ADR A+ Sbjct: 91 LVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKA----QIKLRADRLEANTPNL 146 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 F+ +E+ + ++ K +LIID+ L++N I A Sbjct: 147 FLLTELCLE------NILEELHKKDYSILIIDSIQTLYSNKITSA 185 >gi|283954763|ref|ZP_06372279.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni 414] gi|283793603|gb|EFC32356.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni 414] Length = 446 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 57/105 (54%), Gaps = 14/105 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168 ++L+ G GVGK+T++ K++ ++ G KV+ +G+ ++ Q+K+ ADR A+ Sbjct: 91 LVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKA----QIKLRADRLEANTPNL 146 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 F+ +E+ + ++ K +LIID+ L++N I A Sbjct: 147 FLLTELCLE------NILEELHKKDYSILIIDSIQTLYSNKITSA 185 >gi|197122903|ref|YP_002134854.1| GTP-binding signal recognition particle SRP54 G- domain [Anaeromyxobacter sp. K] gi|196172752|gb|ACG73725.1| GTP-binding signal recognition particle SRP54 G- domain [Anaeromyxobacter sp. K] Length = 382 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 33/229 (14%) Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL-SKKMSDAGLK 141 R V +L+ + L+P P+ D VI VG GVGKTT + K+ ++ + + + Sbjct: 164 RAWRAVKDLLGERLVPCRAPWLHDGRR---VIAAVGPTGVGKTTTLAKVAARALLETRKR 220 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 V DT+R +QL +A V + G AL + VD++++D Sbjct: 221 VAFVTVDTYRLGGAEQLARYAGIMEVPVLVARDRGELGRAL-------ERLSDVDLVLLD 273 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAG H + + ++R + R+ H L V A + + A+A Sbjct: 274 TAG--HASVEDVERQAALVRSVPRVQLH-----LTVSAAAGALELAAVADRYRALAPDR- 325 Query: 261 LIMTKMDGTARGGGLI--------PIVVT---HKIP--VYFLGVGEGIN 296 L++TK+D A G ++ PI ++P V+ LG GE ++ Sbjct: 326 LVLTKLDEAAGPGSVLSAAVRVCRPIACVTNGQRVPEDVHALGAGELVD 374 >gi|116049398|ref|YP_791799.1| flagellar biosynthesis regulator FlhF [Pseudomonas aeruginosa UCBPP-PA14] gi|296390180|ref|ZP_06879655.1| flagellar biosynthesis regulator FlhF [Pseudomonas aeruginosa PAb1] gi|313106452|ref|ZP_07792683.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa 39016] gi|115584619|gb|ABJ10634.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa UCBPP-PA14] gi|310879185|gb|EFQ37779.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa 39016] Length = 429 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 16/188 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V+ +VG G GKTT + K++ + + + L + D++R A +Q+K + Sbjct: 211 VLALVGPAGAGKTTTLAKMAARYVLKYGAQSLALVSMDSYRIGAQEQIKTLGRILNVPVT 270 Query: 171 CSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G S ALA A K+ +++IDTAG ++ L + + P Sbjct: 271 LVDPGQSLIQALAPLARKR-------MVLIDTAGLPASDPALRMQLEALA------SPSL 317 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 V+ T+ L+ + G G I+TK+D G + + + ++PV +L Sbjct: 318 NVKNYLVMATTSQSQVLKSAYQTYRHCGLAGCILTKLDEAGSLGESMALAIAQRLPVAYL 377 Query: 290 GVGEGIND 297 G I D Sbjct: 378 ADGPRIPD 385 >gi|288942620|ref|YP_003444860.1| flagellar biosynthetic protein FlhF [Allochromatium vinosum DSM 180] gi|288897992|gb|ADC63828.1| flagellar biosynthetic protein FlhF [Allochromatium vinosum DSM 180] Length = 432 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 21/190 (11%) Query: 113 VILVVGVNGVGKTTVIGKLS-KKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V+ +VG G GKTT + +L+ ++ G V L D R A QL+ + + Sbjct: 162 VLALVGPTGAGKTTTLSRLALHRIRRLGPDSVTLVTFDRQRIGAHKQLQAFGQMAGVPVI 221 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDP 227 E D ALA + ++++DT GR ++ L A I ++ + L Sbjct: 222 LLENERDLIALANRSASD------HLILVDTEGRSARDAAERKLFAQIRHLVEIETWL-- 273 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287 V+ AT LRQV T L++TK+D R G ++ +++ + + Sbjct: 274 --------VIPATHQAGVLRQVLKAFQSCEPTALVLTKIDEAERLGEILSVLLEQHLGLV 325 Query: 288 FLGVGEGIND 297 F G+ I + Sbjct: 326 FQSDGQRIEE 335 >gi|15596650|ref|NP_250144.1| flagellar biosynthesis regulator FlhF [Pseudomonas aeruginosa PAO1] gi|81857291|sp|Q9I3P8|FLHF_PSEAE RecName: Full=Flagellar biosynthesis protein flhF; AltName: Full=Flagella-associated GTP-binding protein gi|9947405|gb|AAG04842.1|AE004575_1 flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa PAO1] Length = 429 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 16/188 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V+ +VG G GKTT + K++ + + + L + D++R A +Q+K + Sbjct: 211 VLALVGPAGAGKTTTLAKMAARYVLKYGAQSLALVSMDSYRIGAQEQIKTLGRILNVPVT 270 Query: 171 CSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G S ALA A K+ +++IDTAG ++ L + + P Sbjct: 271 LVDPGQSLIQALAPLARKR-------MVLIDTAGLPASDPALRMQLEALA------SPSL 317 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 V+ T+ L+ + G G I+TK+D G + + + ++PV +L Sbjct: 318 NVKNYLVMATTSQSQVLKSAYQTYRHCGLAGCILTKLDEAGSLGESMALAIAQRLPVAYL 377 Query: 290 GVGEGIND 297 G I D Sbjct: 378 ADGPRIPD 385 >gi|145642025|ref|ZP_01797597.1| Signal recognition particle protein [Haemophilus influenzae R3021] gi|145273296|gb|EDK13170.1| Signal recognition particle protein [Haemophilus influenzae 22.4-21] Length = 137 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 10/122 (8%) Query: 21 FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72 F + S +L + + +I RL +D ++E L ++ L+ +D+ + V + K+ E L Sbjct: 2 FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61 Query: 73 KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + K ++ Q L V + K + ++ N + P VIL+ G+ G GKTT +GKL Sbjct: 62 EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNLA-TQPPAVILMAGLQGAGKTTSVGKL 120 Query: 132 SK 133 +K Sbjct: 121 AK 122 >gi|172054920|ref|YP_001806247.1| hypothetical protein cce_4834 [Cyanothece sp. ATCC 51142] gi|171701201|gb|ACB54181.1| hypothetical protein cce_4834 [Cyanothece sp. ATCC 51142] Length = 346 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 22/149 (14%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169 V ++ G G GKTT++ ++ + + + V++ + F ID QL I D + Sbjct: 22 VTIITGFLGSGKTTLLNQILQNKDNLKIAVLV---NEFGDINIDEQLLISVDSDMIELDN 78 Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +C I Y ++ + K+D L+I+T G I+M +G ++ L RLD Sbjct: 79 GCICCTINDGLVNAVYRVLEREE--KIDYLVIETTGLADPFPIIMTFLGTELKFLTRLD- 135 Query: 228 HAPHSVLQVLDATT-------GQNALRQV 249 +V+ V+DA ALRQ+ Sbjct: 136 ----AVITVVDAAAFDAKHFDSDAALRQI 160 >gi|107100887|ref|ZP_01364805.1| hypothetical protein PaerPA_01001917 [Pseudomonas aeruginosa PACS2] gi|218892674|ref|YP_002441543.1| flagellar biosynthesis regulator FlhF [Pseudomonas aeruginosa LESB58] gi|254234552|ref|ZP_04927875.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa C3719] gi|254239802|ref|ZP_04933124.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa 2192] gi|126166483|gb|EAZ51994.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa C3719] gi|126193180|gb|EAZ57243.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa 2192] gi|218772902|emb|CAW28714.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa LESB58] Length = 429 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 16/188 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V+ +VG G GKTT + K++ + + + L + D++R A +Q+K + Sbjct: 211 VLALVGPAGAGKTTTLAKMAARYVLKYGAQSLALVSMDSYRIGAQEQIKTLGRILNVPVT 270 Query: 171 CSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 + G S ALA A K+ +++IDTAG ++ L + + P Sbjct: 271 LVDPGQSLIQALAPLARKR-------MVLIDTAGLPASDPALRMQLEALA------SPSL 317 Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289 V+ T+ L+ + G G I+TK+D G + + + ++PV +L Sbjct: 318 NVKNYLVMATTSQSQVLKSAYQTYRHCGLAGCILTKLDEAGSLGESMALAIAQRLPVAYL 377 Query: 290 GVGEGIND 297 G I D Sbjct: 378 ADGPRIPD 385 >gi|146293657|ref|YP_001184081.1| flagellar biosynthesis regulator FlhF [Shewanella putrefaciens CN-32] gi|145565347|gb|ABP76282.1| GTP-binding signal recognition particle SRP54, G- domain [Shewanella putrefaciens CN-32] Length = 460 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 51/251 (20%), Positives = 109/251 (43%), Gaps = 28/251 (11%) Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114 +G + K++E + A ++ Y +EL+ + L+ + D + V+ Sbjct: 187 VGAMLESKLLEAEFSPAVAAKLAALSQHYTPAELVRALPQSLANMLDNQGDDIVRQGGVV 246 Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +VG GVGKTT + KL+ + + +V L D +R A +QL + + Sbjct: 247 ALVGPTGVGKTTSLAKLAARFAAHHGPEQVALITTDHYRIGAYEQLATYGKIMGCPVKQA 306 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 ++ + Y Q + +++IDTAG + +R+ ++LD +S Sbjct: 307 HDLNELEQILY------QFRNRKLVLIDTAGMGQRD----------MRLYQQLDNLTANS 350 Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 + + + TGQ + Q V F + +G ++TK+D + G + +++ +P+ Sbjct: 351 RIPIRSYLVLSATGQRRVLQDAVNHFKRIP-LSGAVLTKLDESVSLAGALSVLIQSGLPL 409 Query: 287 YFLGVGEGIND 297 ++ G+ + + Sbjct: 410 SYVTDGQRVPE 420 >gi|269137899|ref|YP_003294599.1| putative ABC transporter ATP-binding protein [Edwardsiella tarda EIB202] gi|267983559|gb|ACY83388.1| putative ABC transporter ATP-binding protein [Edwardsiella tarda EIB202] gi|304557951|gb|ADM40615.1| ABC transporter ATP-binding protein YjjK [Edwardsiella tarda FL6-60] Length = 555 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 94/229 (41%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + D R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTDYQKRNETSELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E L+K Y R+L D + S P + ++ ++G N Sbjct: 319 LGDKVLEVSNLSKSYG-----DRLLIDA--------LSFSIP-------KGAIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ +S ++ +D+G V LA+ D FR A D+ +W + + + Sbjct: 359 GAGKSTLFRMISGQEQADSGSITLGDTVTLASVDQFRDAMDDKKSVWEEISGGQDIMRIG 418 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 EI S A + Q K+V L GRLH +L G G M+ Sbjct: 419 NFEIASRAYVGRFNFKGTDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466 >gi|67921569|ref|ZP_00515087.1| Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K [Crocosphaera watsonii WH 8501] gi|67856681|gb|EAM51922.1| Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K [Crocosphaera watsonii WH 8501] Length = 301 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 22/149 (14%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169 V ++ G G GKTT++ ++ + + + V++ + F ID QL I + + Sbjct: 22 VTIITGFLGSGKTTLLNQILQNKDNLKIAVLV---NEFGDINIDEQLLISVESDMIELGN 78 Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +C I Y ++ + KVD L+I+T G I+M +G ++VL RLD Sbjct: 79 GCICCTINDGLVNAVYRVLEREE--KVDYLVIETTGLADPFPIIMTFVGTELKVLTRLD- 135 Query: 228 HAPHSVLQVLDATT-------GQNALRQV 249 +++ V+DA ALRQ+ Sbjct: 136 ----AIITVVDAAAFDAKHFDSDAALRQI 160 >gi|148359328|ref|YP_001250535.1| flagellar GTP-binding protein FlhF [Legionella pneumophila str. Corby] gi|296107375|ref|YP_003619075.1| flagellar GTP-binding protein FlhF [Legionella pneumophila 2300/99 Alcoy] gi|148281101|gb|ABQ55189.1| flagellar GTP-binding protein FlhF [Legionella pneumophila str. Corby] gi|295649276|gb|ADG25123.1| flagellar GTP-binding protein FlhF [Legionella pneumophila 2300/99 Alcoy] gi|307610484|emb|CBX00056.1| flagellar biosynthesis protein FlhF [Legionella pneumophila 130b] Length = 379 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 14/183 (7%) Query: 117 VGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 VG GVGKTT + K++ + + K+ L DT+R AA +QL ++ VC I Sbjct: 166 VGPTGVGKTTTLAKIAARFALRFGADKLGLVTMDTYRIAAQEQLILYGKILGVK-VC--I 222 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 D +LA +Q KK +++IDTAG ++ + + + L+ ++ VL Sbjct: 223 AQDEVSLA-RVLRQLNDKK--LILIDTAGMNPSDERVTKQMTVLSNYLQSIE-----KVL 274 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VL AT+ L + I+TK+D + GG I V+ + + +L G+ Sbjct: 275 -VLPATSHYQVLIDAIKRYQANHVDQCIITKLDESLAVGGAISAVIESNLALGYLTDGQR 333 Query: 295 IND 297 + + Sbjct: 334 VPE 336 >gi|120598265|ref|YP_962839.1| flagellar biosynthesis regulator FlhF [Shewanella sp. W3-18-1] gi|120558358|gb|ABM24285.1| GTP-binding signal recognition particle SRP54, G- domain [Shewanella sp. W3-18-1] Length = 460 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 51/251 (20%), Positives = 109/251 (43%), Gaps = 28/251 (11%) Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114 +G + K++E + A ++ Y +EL+ + L+ + D + V+ Sbjct: 187 VGAMLESKLLEAEFSPAVAAKLAALSQHYTPAELVRALPQSLANMLDNQGDDIVRQGGVV 246 Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +VG GVGKTT + KL+ + + +V L D +R A +QL + + Sbjct: 247 ALVGPTGVGKTTSLAKLAARFAAHHGPEQVALITTDHYRIGAYEQLATYGKIMGCPVKQA 306 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 ++ + Y Q + +++IDTAG + +R+ ++LD +S Sbjct: 307 HDLNELEQILY------QFRNRKLVLIDTAGMGQRD----------MRLYQQLDNLTANS 350 Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 + + + TGQ + Q V F + +G ++TK+D + G + +++ +P+ Sbjct: 351 RIPIRSYLVLSATGQRRVLQDAVNHFKRIP-LSGAVLTKLDESVSLAGALSVLIQSGLPL 409 Query: 287 YFLGVGEGIND 297 ++ G+ + + Sbjct: 410 SYVTDGQRVPE 420 >gi|157415468|ref|YP_001482724.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni 81116] gi|157386432|gb|ABV52747.1| DNA repair protein [Campylobacter jejuni subsp. jejuni 81116] gi|307748110|gb|ADN91380.1| DNA repair protein radA-like protein [Campylobacter jejuni subsp. jejuni M1] gi|315932350|gb|EFV11293.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni 327] Length = 446 Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 56/102 (54%), Gaps = 14/102 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168 ++L+ G GVGK+T++ K++ ++ G KV+ +G+ ++ Q+K+ ADR A+ Sbjct: 91 LVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKA----QIKLRADRLEANTPNL 146 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 F+ +E+ + ++ K +LIID+ L++N I Sbjct: 147 FLLTELCLE------NILEELHKKDYSILIIDSIQTLYSNKI 182 >gi|238918568|ref|YP_002932082.1| ABC transporter ATP-binding protein [Edwardsiella ictaluri 93-146] gi|238868136|gb|ACR67847.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 555 Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 93/229 (40%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + D R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTDYQKRNETSELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E L+K Y R+L D + S P + ++ ++G N Sbjct: 319 LGDKVLEVSNLSKSYG-----DRLLIDA--------LSFSIP-------KGAIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ +S ++ D+G V LA+ D FR A D+ +W + + + Sbjct: 359 GAGKSTLFRMISGQEQPDSGSITLGDTVTLASVDQFRDAMDDKKSVWEEVSGGQDIMRIG 418 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 EI S A + Q K+V L GRLH +L G G M+ Sbjct: 419 NFEIASRAYVGRFNFKGTDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466 >gi|205356227|ref|ZP_03222993.1| putative DNA repair protein RadA (ATP-dependant protease) [Campylobacter jejuni subsp. jejuni CG8421] gi|205345832|gb|EDZ32469.1| putative DNA repair protein RadA (ATP-dependant protease) [Campylobacter jejuni subsp. jejuni CG8421] Length = 446 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 14/105 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168 ++L+ G GVGK+T++ K++ ++ G KV+ +G+ ++ Q+K+ ADR A+ Sbjct: 91 LVLIGGSPGVGKSTLLLKIASNLAKQGRKVLYVSGEESKA----QIKLRADRLEANTPNL 146 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 F+ +E+ + ++ K +LIID+ L++N + A Sbjct: 147 FLLTELCLE------NILEELHKKDYSILIIDSIQTLYSNKVTSA 185 >gi|167534832|ref|XP_001749091.1| hypothetical protein [Monosiga brevicollis MX1] gi|163772515|gb|EDQ86166.1| predicted protein [Monosiga brevicollis MX1] Length = 722 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 25/42 (59%) Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +GGG + + + PV F+G GE I DLEPF + F + + G Sbjct: 428 QGGGALSAIAATRSPVIFIGTGERIEDLEPFAPRSFVSKLLG 469 >gi|52842011|ref|YP_095810.1| flagellar biosynthesis regulator FlhF [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629122|gb|AAU27863.1| flagellar GTP-binding protein FlhF [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 386 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 14/183 (7%) Query: 117 VGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 VG GVGKTT + K++ + + K+ L DT+R AA +QL ++ VC I Sbjct: 173 VGPTGVGKTTTLAKIAARFALRFGADKLGLVTMDTYRIAAQEQLILYGKILGVK-VC--I 229 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 D +LA +Q KK +++IDTAG ++ + + + L+ ++ VL Sbjct: 230 AQDEVSLA-RVLRQLNDKK--LILIDTAGMNPSDERVTKQMTVLSNYLQSIE-----KVL 281 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VL AT+ L + I+TK+D + GG I V+ + + +L G+ Sbjct: 282 -VLPATSHYQVLIDAIKRYQANHVDQCIITKLDESLAVGGAISAVIESNLALGYLTDGQR 340 Query: 295 IND 297 + + Sbjct: 341 VPE 343 >gi|283956598|ref|ZP_06374077.1| putative DNA repair protein RadA (ATP-dependant protease) [Campylobacter jejuni subsp. jejuni 1336] gi|283791847|gb|EFC30637.1| putative DNA repair protein RadA (ATP-dependant protease) [Campylobacter jejuni subsp. jejuni 1336] Length = 446 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 14/105 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168 ++L+ G GVGK+T++ K++ ++ G KV+ +G+ ++ Q+K+ ADR A+ Sbjct: 91 LVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKT----QIKLRADRLEANTPNL 146 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 F+ +E+ + ++ K +LI+D+ L++N I A Sbjct: 147 FLLTELCLE------NILEELHKKDYSILIVDSIQTLYSNKITSA 185 >gi|54294671|ref|YP_127086.1| flagellar biosynthesis regulator FlhF [Legionella pneumophila str. Lens] gi|53754503|emb|CAH15987.1| Flagellar biosynthesis protein FlhF [Legionella pneumophila str. Lens] Length = 379 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 14/183 (7%) Query: 117 VGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 VG GVGKTT + K++ + + K+ L DT+R AA +QL ++ VC I Sbjct: 166 VGPTGVGKTTTLAKIAARFALRFGADKLGLVTMDTYRIAAQEQLILYGKILGVK-VC--I 222 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 D +LA +Q KK +++IDTAG ++ + + + L+ ++ VL Sbjct: 223 AQDEVSLA-RVLRQLNDKK--LILIDTAGMNPSDERVTKQMTVLSNYLQSIE-----KVL 274 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VL AT+ L + I+TK+D + GG I V+ + + +L G+ Sbjct: 275 -VLPATSHYQVLIDAIKRYQANHVDQCIITKLDESLAVGGAISAVIESNLALGYLTDGQR 333 Query: 295 IND 297 + + Sbjct: 334 VPE 336 >gi|319794895|ref|YP_004156535.1| ABC transporter [Variovorax paradoxus EPS] gi|315597358|gb|ADU38424.1| ABC transporter related protein [Variovorax paradoxus EPS] Length = 553 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 74/171 (43%), Gaps = 27/171 (15%) Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPF-------NWDFSHRPHVIL-V 116 EEL Y K Q + V+E + + + SK F N F+ P I+ + Sbjct: 294 EELSDMEYQKRNETQEIFIPVAERLGQQVFEFHGVSKSFGDRMLIDNLSFTVPPGAIVGI 353 Query: 117 VGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSA 167 +G NG GK+T+ L+ K+ D G V+ G T + A +DQ + +W D ++ Sbjct: 354 IGPNGAGKSTLFKLLAGKEKPDTGEVVI---GSTVKMAFVDQHRDELANNKTVWEDISNG 410 Query: 168 DFVCS----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 + + ++ S A A + Q KKV L GRLH L+AG Sbjct: 411 LDIINVGKFQMASRAYAGRFNFNGADQQKKVGTLSGGERGRLHLAKTLIAG 461 >gi|282600391|ref|ZP_05974115.2| ABC transporter, ATP-binding protein YjiK [Providencia rustigianii DSM 4541] gi|282565461|gb|EFB70996.1| ABC transporter, ATP-binding protein YjiK [Providencia rustigianii DSM 4541] Length = 548 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 95/230 (41%), Gaps = 39/230 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L WIR+ KG S K K + ++ R E +L I G Sbjct: 257 ARRKSIEKELEWIRQNPKGRQS---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E E L+K Y RVL D N FS + ++ ++G Sbjct: 312 LGDKVLEIENLSKSYG-----DRVLID----------------NLSFSIPKGAIVGIIGP 350 Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172 NG GK+T+ +S ++ D+G V +A+ D FR A D +W + ++ + Sbjct: 351 NGAGKSTLFRMISGQEQPDSGSITLGDTVKIASVDQFRDAMDDSKTVWEEISNGQDIMRI 410 Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 EI S A + Q K+V L GRLH +L G G M+ Sbjct: 411 GNFEIPSRAYVGRFNFKGIDQGKRVGELSGGERGRLHLAKLLQVG-GNML 459 >gi|54297697|ref|YP_124066.1| flagellar biosynthesis regulator FlhF [Legionella pneumophila str. Paris] gi|53751482|emb|CAH12900.1| Flagellar biosynthesis protein FlhF [Legionella pneumophila str. Paris] Length = 379 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 14/183 (7%) Query: 117 VGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 VG GVGKTT + K++ + + K+ L DT+R AA +QL ++ VC I Sbjct: 166 VGPTGVGKTTTLAKIAARFALRFGADKLGLVTMDTYRIAAQEQLILYGKILGVK-VC--I 222 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 D +LA +Q KK +++IDTAG ++ + + + L+ ++ VL Sbjct: 223 AQDEVSLA-RVLRQLNDKK--LILIDTAGMNPSDERVTKQMTVLSNYLQSIE-----KVL 274 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VL AT+ L + I+TK+D + GG I V+ + + +L G+ Sbjct: 275 -VLPATSHYQVLIDAIKRYQANHVDQCIITKLDESLAVGGAISAVIESNLALGYLTDGQR 333 Query: 295 IND 297 + + Sbjct: 334 VPE 336 >gi|86150402|ref|ZP_01068628.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839227|gb|EAQ56490.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni CF93-6] Length = 446 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 14/105 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168 ++L+ G GVGK+T++ K++ ++ G KV+ +G+ ++ Q+K+ ADR A+ Sbjct: 91 LVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKA----QIKLRADRLEANTPNL 146 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 F+ +E+ + ++ K +LIID+ L++N + A Sbjct: 147 FLLTELCLE------NILEELHKKDYSILIIDSIQTLYSNKVTSA 185 >gi|148926208|ref|ZP_01809893.1| putative DNA repair protein RadA (ATP-dependant protease) [Campylobacter jejuni subsp. jejuni CG8486] gi|145845379|gb|EDK22472.1| putative DNA repair protein RadA (ATP-dependant protease) [Campylobacter jejuni subsp. jejuni CG8486] Length = 446 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 14/105 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168 ++L+ G GVGK+T++ K++ ++ G KV+ +G+ ++ Q+K+ ADR A+ Sbjct: 91 LVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKA----QIKLRADRLEANTPNL 146 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 F+ +E+ + ++ K +LIID+ L++N + A Sbjct: 147 FLLTELCLE------NILEELHKKDYSILIIDSIQTLYSNKVTSA 185 >gi|88596739|ref|ZP_01099976.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni 84-25] gi|218562817|ref|YP_002344596.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|17433166|sp|Q9PN90|RADA_CAMJE RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA repair protein Sms homolog gi|88191580|gb|EAQ95552.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni 84-25] gi|112360523|emb|CAL35320.1| putative DNA repair protein RadA (ATP-dependant protease) [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926429|gb|ADC28781.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni IA3902] gi|315927265|gb|EFV06610.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315928959|gb|EFV08209.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni 305] Length = 446 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 14/105 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168 ++L+ G GVGK+T++ K++ ++ G KV+ +G+ ++ Q+K+ ADR A+ Sbjct: 91 LVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKA----QIKLRADRLEANTPNL 146 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 F+ +E+ + ++ K +LI+D+ L++N I A Sbjct: 147 FLLTELCLE------NILEELHKKDYSILIVDSIQTLYSNKITSA 185 >gi|330685440|gb|EGG97096.1| ABC transporter, ATP-binding protein [Staphylococcus epidermidis VCU121] Length = 644 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P++KP N + S H I ++G NGVGKTT+I ++++ G +V A Q Sbjct: 344 PITKPINMEVSKGDH-IAIIGPNGVGKTTLIKTIAQRQRQLGGEVTFGANLKIGYYDQKQ 402 Query: 158 LKIWADRTSADFVCSE 173 + +++T D+V + Sbjct: 403 AEFKSNKTILDYVWDQ 418 >gi|170725988|ref|YP_001760014.1| flagellar biosynthesis regulator FlhF [Shewanella woodyi ATCC 51908] gi|169811335|gb|ACA85919.1| GTP-binding signal recognition particle SRP54 G- domain [Shewanella woodyi ATCC 51908] Length = 467 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 55/252 (21%), Positives = 109/252 (43%), Gaps = 30/252 (11%) Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114 +G + K++E + A +S Y +EL+ + L+ + D + V+ Sbjct: 194 VGAMLESKLLEAEFSPMVATKLSDLSEHYQPAELVKALPRCLANMLDNQGDDIVRQGGVV 253 Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 VG GVGKTT + KL+ + + +V L D +R A +QL + + Sbjct: 254 AFVGPTGVGKTTTVAKLAARFAAHHGSDQVALITTDHYRIGAFEQLATYGKIMGCPVKQA 313 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM-IRVLKRLDPHAPH 231 ++ + Y Q + +++IDT AG+G+ +R+ ++LD A + Sbjct: 314 HDLNELEQILY------QFRNRKLVLIDT-----------AGMGQRDLRLFQQLDNLAAN 356 Query: 232 SVLQ-----VLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 S L VL AT + L V F + +G ++TK+D + + +++ +P Sbjct: 357 SRLPIRSYLVLSATGQRRVLEDAVAQFKRIP-LSGAVLTKLDESVSLAPALSVLIQSGLP 415 Query: 286 VYFLGVGEGIND 297 + ++ G+ + + Sbjct: 416 LSYVTDGQRVPE 427 >gi|57238077|ref|YP_179326.1| DNA repair protein RadA [Campylobacter jejuni RM1221] gi|86152977|ref|ZP_01071182.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612483|ref|YP_001000880.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni 81-176] gi|167005790|ref|ZP_02271548.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni 81-176] gi|57166881|gb|AAW35660.1| DNA repair protein RadA [Campylobacter jejuni RM1221] gi|85843862|gb|EAQ61072.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249173|gb|EAQ72134.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni 81-176] gi|315058637|gb|ADT72966.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni S3] Length = 446 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 14/105 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168 ++L+ G GVGK+T++ K++ ++ G KV+ +G+ ++ Q+K+ ADR A+ Sbjct: 91 LVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKA----QIKLRADRLEANTPNL 146 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 F+ +E+ + ++ K +LI+D+ L++N I A Sbjct: 147 FLLTELCLE------NILEELHKKDYSILIVDSIQTLYSNKITSA 185 >gi|124027685|ref|YP_001013005.1| hypothetical protein Hbut_0807 [Hyperthermus butylicus DSM 5456] gi|123978379|gb|ABM80660.1| hypothetical protein Hbut_0807 [Hyperthermus butylicus DSM 5456] Length = 107 Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 30/39 (76%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 +PH+++V G GVGKTTV +L+ ++S +G KV+LA+ D Sbjct: 14 KPHIVIVTGKGGVGKTTVCIRLAYELSASGGKVLLASLD 52 >gi|37524561|ref|NP_927905.1| putative ABC transporter ATP-binding protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783985|emb|CAE12850.1| ATP-binding protein YjjK [Photorhabdus luminescens subsp. laumondii TTO1] Length = 555 Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 95/230 (41%), Gaps = 39/230 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG + K K + ++ R E +L I G Sbjct: 264 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + KI+E E LTK Y RVL D N +FS + ++ ++G Sbjct: 319 LGDKILEVENLTKSYG-----DRVLID----------------NLNFSLPKGAIVGIIGP 357 Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172 NG GK+T+ +S ++ D+G V LA+ D FR D+ +W + + + Sbjct: 358 NGAGKSTLFRMISNQEQPDSGTITLGETVKLASVDQFRDNMDDKKTVWEEISGGQDIMRI 417 Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 E+ S A + Q K+V L GRLH +L G G M+ Sbjct: 418 GNFELPSRAYVGRFNFKGIDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466 >gi|291326923|ref|ZP_06126371.2| ABC transporter, ATP-binding protein YjiK [Providencia rettgeri DSM 1131] gi|291312549|gb|EFE53002.1| ABC transporter, ATP-binding protein YjiK [Providencia rettgeri DSM 1131] Length = 548 Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 93/225 (41%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L WIR+ KG + K K + ++ R E +L I G Sbjct: 257 ARRKSIEKELEWIRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E E L+K Y RVL D N +FS + ++ ++G Sbjct: 312 LGDKVIEVENLSKSYG-----DRVLID----------------NLNFSIPKGAIVGIIGP 350 Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172 NG GK+T+ +S ++ D+G V +A+ D FR A D +W + ++ + Sbjct: 351 NGAGKSTLFRMISGQEQPDSGSITLGDTVKIASVDQFRDAMDDSKTVWEEISNGQDIMRI 410 Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 411 GNFEIPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 455 >gi|221112103|ref|XP_002157121.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 209 Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 6/117 (5%) Query: 47 EELEDLLIRSDIGVAVAQKIVEELLT----KRYAKDVSVQRVL-YDVSELIHKMLMPLSK 101 +E+ L+ +D+ V + QK+ + + A + +R++ + V + + K++ P K Sbjct: 43 KEICAALLEADVNVQLVQKLRANIKNAANFEEMAAGTNKRRLIQHTVFQELCKLVDPGVK 102 Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 + + +VI+ VG+ G GKTT KL+ G K L DTFR+ I+ L Sbjct: 103 AWQ-PIKGKNNVIMFVGLQGSGKTTTCTKLAYYYQRKGWKTCLVCADTFRADKINIL 158 >gi|298530156|ref|ZP_07017558.1| AAA ATPase [Desulfonatronospira thiodismutans ASO3-1] gi|298509530|gb|EFI33434.1| AAA ATPase [Desulfonatronospira thiodismutans ASO3-1] Length = 423 Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 21/110 (19%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 HRP V ++G GKTT++ + K++ DAG F S DQ +++ D S Sbjct: 19 HRPEVAFLIGPRQAGKTTLMQIIQKELKDAG------ENTVFLSLDYDQDRVFFD--SQQ 70 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218 + +I + + K + ID GRL N I + G+ M Sbjct: 71 HLLKKI-------------ELETGKSGFVFIDEIGRLDNAGIFLKGLQDM 107 >gi|126664992|ref|ZP_01735975.1| Flagellar GTP-binding protein [Marinobacter sp. ELB17] gi|126630362|gb|EBA00977.1| Flagellar GTP-binding protein [Marinobacter sp. ELB17] Length = 453 Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust. Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 27/197 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V +VG G GKTT IGKL+ + + + L D +R AA +QL FV Sbjct: 248 VFALVGPTGAGKTTTIGKLAARYVLRHGADSLALITTDRYRVAAHEQL----------FV 297 Query: 171 CSEIGS------DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 I + D + E + ++ +++IDTAG + + ++ R + Sbjct: 298 FGRILNVPVRVVDESHPLDEILDELSDRR--LVLIDTAGLTSTDRGYQEQLAELARSHHK 355 Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 + H V+ AT+ ++ V + +A G ++TK+D G + V+ + Sbjct: 356 IRTHL------VVSATSQPRIMKSVWHCYKMANLAGCVITKIDEALTLGEALGFVMETSL 409 Query: 285 PVYFLGVGEGI-NDLEP 300 PV + G+ I DL P Sbjct: 410 PVAWYTDGQKIPQDLHP 426 >gi|75908169|ref|YP_322465.1| cobalamin synthesis protein/P47K [Anabaena variabilis ATCC 29413] gi|75701894|gb|ABA21570.1| Cobalamin synthesis protein/P47K [Anabaena variabilis ATCC 29413] Length = 349 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 15/132 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRT----SA 167 V ++ G G GKTT++ ++ K D + V++ + F ID QL + D+ S Sbjct: 22 VTIITGFLGSGKTTLLNQILKNKHDLKVAVLV---NEFGDINIDSQLLVSVDQDMLELSN 78 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +C I Y ++ + ++D L+I+T G I++ +G +R L LD Sbjct: 79 GCICCTINDGLVDAVYRVLEREE--RIDYLVIETTGVADPLPIILTFLGTELRDLTNLD- 135 Query: 228 HAPHSVLQVLDA 239 S+L V+DA Sbjct: 136 ----SILTVVDA 143 >gi|113969437|ref|YP_733230.1| putative ABC transporter ATP-binding protein [Shewanella sp. MR-4] gi|114046665|ref|YP_737215.1| putative ABC transporter ATP-binding protein [Shewanella sp. MR-7] gi|113884121|gb|ABI38173.1| ABC transporter related [Shewanella sp. MR-4] gi|113888107|gb|ABI42158.1| ABC transporter related [Shewanella sp. MR-7] Length = 555 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 90/225 (40%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG S K K + D R E +L I G Sbjct: 264 ARQKTIAKELEWVRQGAKGRQS---KGKARMARFEELNTTDYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E + LTK Y RVL D N FS + ++ ++G Sbjct: 319 LGDKVIEVKNLTKSYG-----DRVLID----------------NLSFSIPKGAIVGIIGA 357 Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172 NG GK+T+ LS + D+G V LA+ + FR + D+ IW + + + Sbjct: 358 NGAGKSTLFRMLSGSEQPDSGTIELGETVQLASVEQFRDSMNDKNTIWQEISGGQDIMRI 417 Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K + L R+H +L AG Sbjct: 418 NNMEIPSRAYVGRFNFRGADQQKVIGTLSGGERNRVHLAKLLQAG 462 >gi|308048544|ref|YP_003912110.1| ABC transporter [Ferrimonas balearica DSM 9799] gi|307630734|gb|ADN75036.1| ABC transporter related protein [Ferrimonas balearica DSM 9799] Length = 554 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 92/224 (41%), Gaps = 42/224 (18%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 K + L W+R+ KG + S ++ SS D R E +L I G + Sbjct: 267 KSIQKELEWVRQNPKGRQAKSKARMARFEELNSS---DYQKRNETNELFIPP--GPRLGD 321 Query: 65 KIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 K++E LTK Y V LI + L K ++ ++G NG G Sbjct: 322 KVLEINHLTKSYNGRV-----------LIDDLSFTLPKG---------AIVGIIGPNGAG 361 Query: 124 KTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD----- 177 K+T+ LS ++ D+G V+ GDT + A++DQ + D + F G D Sbjct: 362 KSTLFRMLSGQETPDSGEIVL---GDTVQLASVDQFRDSMDDSKTVFQEVSNGQDILKIG 418 Query: 178 ---AAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 A AY + FK Q K+V L GRLH +L AG Sbjct: 419 SFEIPARAYVSRFNFKGTDQQKRVGELSGGERGRLHLAKLLQAG 462 >gi|91984111|gb|ABE68919.1| FlhF [Azospirillum brasilense] Length = 353 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 37/201 (18%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 +++VG G GKT ++ KL+ + V + DT R+ ++QL + E Sbjct: 138 LILVGPPGSGKTLIVAKLAAQAVFRKRSVGVITTDTVRAGGMEQLAAFTRLMKIKLATVE 197 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN--------SILMAGIGKMIRVLKRL 225 DA A A+E + A DV+++DTAGR N ++L AG+ + I VL Sbjct: 198 -DPDALAGAFEVSRGA-----DVVLVDTAGRNPYNREDMADLKALLSAGVAEPILVLP-- 249 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 LDA + + F A+ G +++T++D R G L + H+ Sbjct: 250 ---------AGLDAMEAADI---AQSFKAL-GVRRMLITRLDMARRLGSL--LGTAHRSR 294 Query: 286 VYFLG------VGEGINDLEP 300 + F V EG+ L P Sbjct: 295 MAFCNASVSSKVAEGLTPLNP 315 >gi|219871118|ref|YP_002475493.1| antitoxin/toxin system zeta toxin, signal recognition particle GTPase [Haemophilus parasuis SH0165] gi|219691322|gb|ACL32545.1| anititoxin/toxin system zeta toxin, signal recognition particle GTPase [Haemophilus parasuis SH0165] Length = 220 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 4/103 (3%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 +P+ I+V GV+G GK+T I L +K+S L D +R +LK + ++ D Sbjct: 30 KPYAIVVAGVSGSGKSTCIANLLEKIS---LNYFPIQADDYRKFH-PKLKEYREKFGNDQ 85 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 + G+ A A E +A K++++L T G + + L+ Sbjct: 86 AHKKTGNFAHRFAIELLNKAFDKQLNILYETTFGNIETATNLL 128 >gi|226322934|ref|ZP_03798452.1| hypothetical protein COPCOM_00706 [Coprococcus comes ATCC 27758] gi|225208720|gb|EEG91074.1| hypothetical protein COPCOM_00706 [Coprococcus comes ATCC 27758] Length = 518 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 ++L++ +L+ PLSKP N+ R H I +VG NG+GKTT + Sbjct: 323 KMLFETKDLVIGYDEPLSKPLNFQME-RGHKIAIVGTNGIGKTTFL 367 >gi|114332397|ref|YP_748619.1| flagellar biosynthesis regulator FlhF [Nitrosomonas eutropha C91] gi|114309411|gb|ABI60654.1| GTP-binding signal recognition particle SRP54, G- domain [Nitrosomonas eutropha C91] Length = 423 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 43/187 (22%), Positives = 85/187 (45%), Gaps = 14/187 (7%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V ++G GVGKTT KL+ + + KV L D++R +QL+I+ Sbjct: 193 VYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR 252 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + D + +E + +++IDT G + +L + I +L + Sbjct: 253 SIKDIEDLQLMLHE------LRGKHMVLIDTVGMSQRDQML----AEQIAMLSQCGTKIK 302 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290 H L +L+AT+ + L +V + G I+TK+D +A G + ++ K+ ++++ Sbjct: 303 H--LLLLNATSSGDTLDEVISAYQKHSIHGCIITKVDESASLGIALDAIIRRKLVLHYVT 360 Query: 291 VGEGIND 297 G+ + + Sbjct: 361 NGQKVPE 367 >gi|117919542|ref|YP_868734.1| putative ABC transporter ATP-binding protein [Shewanella sp. ANA-3] gi|117611874|gb|ABK47328.1| ABC transporter related [Shewanella sp. ANA-3] Length = 555 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 89/225 (39%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG S K K + D R E +L I G Sbjct: 264 ARQKTIAKELEWVRQGAKGRQS---KGKARMARFEELNTTDYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E LTK Y RVL D N FS + ++ ++G Sbjct: 319 LGDKVIEVNNLTKSYG-----DRVLID----------------NLSFSIPKGAIVGIIGA 357 Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172 NG GK+T+ LS + D+G V LA+ + FR + D+ IW + + + Sbjct: 358 NGAGKSTLFRMLSGSEQPDSGTIELGETVQLASVEQFRDSMNDKNTIWQEISGGQDIMRI 417 Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K + L R+H +L AG Sbjct: 418 NNMEIPSRAYVGRFNFRGADQQKVIGTLSGGERNRVHLAKLLQAG 462 >gi|17232214|ref|NP_488762.1| hypothetical protein all4722 [Nostoc sp. PCC 7120] gi|17133859|dbj|BAB76421.1| all4722 [Nostoc sp. PCC 7120] Length = 353 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 15/132 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRT----SA 167 V ++ G G GKTT++ ++ K D + V++ + F ID QL + D+ S Sbjct: 22 VTIITGFLGSGKTTLLNQILKNKHDLKVAVLV---NEFGDINIDSQLLVSVDQDMLELSN 78 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +C I Y ++ + ++D L+I+T G I++ +G +R L LD Sbjct: 79 GCICCTINDGLVDAVYRVLEREE--RIDYLVIETTGVADPLPIILTFLGTELRDLTNLD- 135 Query: 228 HAPHSVLQVLDA 239 S+L V+DA Sbjct: 136 ----SILTVVDA 143 >gi|294634703|ref|ZP_06713235.1| ABC transporter, ATP-binding protein YjiK [Edwardsiella tarda ATCC 23685] gi|291091879|gb|EFE24440.1| ABC transporter, ATP-binding protein YjiK [Edwardsiella tarda ATCC 23685] Length = 548 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 57/228 (25%), Positives = 91/228 (39%), Gaps = 35/228 (15%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + D R E +L I G Sbjct: 257 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTDYQKRNETSELFIPP--GPR 311 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 + K++E VS Y +LI + + K ++ ++G NG Sbjct: 312 LGDKVLE----------VSNLSKSYGDRQLIDNLSFAIPKG---------AIVGIIGPNG 352 Query: 122 VGKTTVIGKLS-KKMSDAG-----LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS--- 172 GK+T+ +S ++ D+G V+LA+ D FR A D+ +W + + + Sbjct: 353 AGKSTLFRMISGQEQPDSGDITLGETVVLASVDQFRDAMDDKKSVWEEVSGGQDIMRIGN 412 Query: 173 -EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 EI S A + Q K+V L GRLH +L G G M+ Sbjct: 413 FEIASRAYVGRFNFKGTDQGKRVGELSGGERGRLHLAKLLQVG-GNML 459 >gi|172054929|ref|YP_001806256.1| hypothetical protein cce_4843 [Cyanothece sp. ATCC 51142] gi|171701210|gb|ACB54190.1| hypothetical protein cce_4843 [Cyanothece sp. ATCC 51142] Length = 346 Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 15/132 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ---LKIWADRTSAD- 168 V ++ G G GKTT++ ++ + D + V++ + F ID+ + + +D D Sbjct: 22 VTIITGFLGSGKTTLLNQILQNKDDLKIAVLV---NEFGDINIDEKLLISVDSDMIELDN 78 Query: 169 -FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +C I Y A+ +KVD L+++T G I++ +G ++ L RLD Sbjct: 79 GCICCTINDGLINAVYRIL--AREEKVDYLVVETTGLADPLRIILTFLGTELKFLTRLD- 135 Query: 228 HAPHSVLQVLDA 239 S++ V+DA Sbjct: 136 ----SIITVVDA 143 >gi|239637780|ref|ZP_04678744.1| ATP-binding ABC transporter protein [Staphylococcus warneri L37603] gi|239596629|gb|EEQ79162.1| ATP-binding ABC transporter protein [Staphylococcus warneri L37603] Length = 644 Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P++KP N + S H I ++G NGVGKTT+I ++++ G +V A Q Sbjct: 344 PITKPINLEVSKGDH-IAIIGPNGVGKTTLIKTIAQRQRPLGGEVTFGANLQIGYYDQKQ 402 Query: 158 LKIWADRTSADFVCSE 173 + +++T D+V + Sbjct: 403 AEFKSNKTILDYVWDQ 418 >gi|57168085|ref|ZP_00367224.1| DNA repair protein RadA [Campylobacter coli RM2228] gi|305431764|ref|ZP_07400931.1| DNA repair protein RadA [Campylobacter coli JV20] gi|57020459|gb|EAL57128.1| DNA repair protein RadA [Campylobacter coli RM2228] gi|304444848|gb|EFM37494.1| DNA repair protein RadA [Campylobacter coli JV20] Length = 446 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 57/106 (53%), Gaps = 14/106 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168 ++L+ G GVGK+T++ K++ ++ KV+ +G+ ++ Q+K+ ADR A+ Sbjct: 91 LVLIGGSPGVGKSTLLLKIASNLAKKNKKVLYVSGEESKA----QIKLRADRLEANTPNL 146 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 F+ +E+ + ++ K ++LIID+ L++N I A Sbjct: 147 FLLTELCLE------NILEELHKKNYEILIIDSIQTLYSNKIASAA 186 >gi|253988005|ref|YP_003039361.1| ABC transporter ATP-binding protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779455|emb|CAQ82616.1| abc transporter atp-binding protein yjjk [Photorhabdus asymbiotica] Length = 555 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 94/230 (40%), Gaps = 39/230 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG + K K + ++ R E +L I G Sbjct: 264 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GSR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E E LTK Y RVL D N FS + ++ ++G Sbjct: 319 LGDKVLEVENLTKSYG-----DRVLID----------------NLSFSLPKGAIVGIIGP 357 Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172 NG GK+T+ LS ++ D+G V LA+ D FR D+ +W + + + Sbjct: 358 NGAGKSTLFRMLSNQEQPDSGTITLGETVKLASVDQFRDNMDDKKTVWEEISGGQDIMRI 417 Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 E+ S A + Q K+V L GRLH +L G G M+ Sbjct: 418 GNFELPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466 >gi|242371717|ref|ZP_04817291.1| ABC superfamily ATP binding cassette transporter, ABC protein [Staphylococcus epidermidis M23864:W1] gi|242350577|gb|EES42178.1| ABC superfamily ATP binding cassette transporter, ABC protein [Staphylococcus epidermidis M23864:W1] Length = 643 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P+++P N + S H I V+G NGVGKTT+I +++K + G + A Q Sbjct: 343 PITEPINIEVSKGDH-IAVIGPNGVGKTTLIKTIAQKQDNLGGSITFGANLQIGYYDQKQ 401 Query: 158 LKIWADRTSADFVCSE 173 + +++T D+V + Sbjct: 402 AEFKSNKTILDYVWDQ 417 >gi|157376183|ref|YP_001474783.1| flagellar biosynthesis regulator FlhF [Shewanella sediminis HAW-EB3] gi|157318557|gb|ABV37655.1| GTP-binding signal recognition particle SRP54, G-domain [Shewanella sediminis HAW-EB3] Length = 464 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 52/251 (20%), Positives = 108/251 (43%), Gaps = 28/251 (11%) Query: 58 IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114 +G + K+++ + A +S Y +EL+ + L+ + D + V+ Sbjct: 192 VGAMLESKLLDAEFSPAVATKLSDLSEHYTPAELVRTLPRSLANMLDNQGDDIVRQGGVV 251 Query: 115 LVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 VG GVGKTT + KL+ + +V L D +R A +QL + + Sbjct: 252 AFVGPTGVGKTTTVAKLAARYVAHHGADQVALITTDHYRIGAFEQLATYGKIMGCPVKQA 311 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232 S+ + Y Q + +++IDTAG + IR+ ++LD A +S Sbjct: 312 HDLSELEQILY------QFRNRKLVLIDTAGMGQRD----------IRLFQQLDNLAANS 355 Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286 + + ++TGQ + + V F + +G ++TK+D + + +++ +P+ Sbjct: 356 RIPIRSYLVLSSTGQRRVLEDAVAQFKRIP-LSGAVLTKLDESISLAPALSVLIQSGLPL 414 Query: 287 YFLGVGEGIND 297 ++ G+ + + Sbjct: 415 SYVTDGQRVPE 425 >gi|71906380|ref|YP_283967.1| flagellar biosynthesis regulator FlhF [Dechloromonas aromatica RCB] gi|71846001|gb|AAZ45497.1| GTP-binding signal recognition particle SRP54, G-domain [Dechloromonas aromatica RCB] Length = 487 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 20/196 (10%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V +VG GVGKTT KL+ + + KV L D +R A +QL+I+ Sbjct: 260 DIVDRGGVYALVGPTGVGKTTTTAKLAARCVLRHGPSKVALVTTDGYRIGAHEQLRIYGR 319 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 V + DAA L + + Q K + ++IDT G M+ K++ L Sbjct: 320 ILG---VSVHLVKDAAEL-RQTLIELQHKHM--VLIDTMG--------MSQKDKLVPELT 365 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVVT 281 + L +L++T+ + L V A AG T G I+TK+D A + +++ Sbjct: 366 DMLAGCAVQRLLLLNSTSRGDTLDDV--VRAYAGDTLAGCILTKIDEAASLATALDVIMR 423 Query: 282 HKIPVYFLGVGEGIND 297 H + + ++ G+ + + Sbjct: 424 HNLKLLYVSNGQRVPE 439 >gi|298490115|ref|YP_003720292.1| cobalamin synthesis protein P47K ['Nostoc azollae' 0708] gi|298232033|gb|ADI63169.1| cobalamin synthesis protein P47K ['Nostoc azollae' 0708] Length = 362 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 15/134 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT-----SA 167 V ++ G G GKTT++ + V++ + F ID I A S Sbjct: 23 VTIITGFLGSGKTTLLNHILTNQQGVKTAVLV---NEFGEIGIDNELIVATENNMLELSN 79 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +C I +D Y+ ++ + K+D L+++T G + M + +R+L RLD Sbjct: 80 GCICCTINNDLVDAVYKVLEREE--KLDYLVVETTGLADPLPVAMTFLSSELRILTRLD- 136 Query: 228 HAPHSVLQVLDATT 241 S++ V+DAT Sbjct: 137 ----SIVTVVDATN 146 >gi|294140218|ref|YP_003556196.1| flagellar biosynthetic protein FlhF [Shewanella violacea DSS12] gi|293326687|dbj|BAJ01418.1| flagellar biosynthetic protein FlhF [Shewanella violacea DSS12] Length = 464 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 61/290 (21%), Positives = 126/290 (43%), Gaps = 36/290 (12%) Query: 17 LTKGFASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 + + AS L +T ++S ++ D V LE L+ ++ AV++K+ E L++ Y Sbjct: 164 MREELASLRSLLTHQVTALMSEQKSRVDPVGAMLESKLLDAEFSPAVSKKLSE--LSEHY 221 Query: 76 AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 V+ + ++ ++ D + V+ VG GVGKTT + KL+ + Sbjct: 222 TPADLVRALPRSLANMLDNQ--------GDDIVRQGGVVAFVGPTGVGKTTTLAKLAARY 273 Query: 136 S--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 + V L D +R A +QL + + ++ + Y Q + Sbjct: 274 AAHHGAEHVALITTDHYRIGAFEQLATYGKIMGCPVKQAHDLNELEQILY------QFRN 327 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD----ATTGQNALRQ- 248 +++IDTAG + +R+ ++LD A +S L + ++TGQ + + Sbjct: 328 RKLVLIDTAGMGQRD----------MRLFQQLDNLAANSRLPIRSYLVLSSTGQRRVLEE 377 Query: 249 -VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 V F + +G I+TK+D + + +++ +P+ ++ G+ + + Sbjct: 378 AVTQFSRIP-LSGAILTKLDESVSLAPALSVLIQSGLPLSYVTDGQRVPE 426 >gi|237653598|ref|YP_002889912.1| flagellar biosynthesis regulator FlhF [Thauera sp. MZ1T] gi|237624845|gb|ACR01535.1| GTP-binding signal recognition particle SRP54 G- domain protein [Thauera sp. MZ1T] Length = 489 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 56/261 (21%), Positives = 106/261 (40%), Gaps = 50/261 (19%) Query: 53 LIRSDIGVAVAQKIVEEL------LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106 L+ + A+A+K+VE + + R A ++ R++ + + D Sbjct: 223 LLEAGFSAAIARKLVEAVHEDADRIEAREAVGAALDRLMRACAS-------------DED 269 Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 R V +VG GVGKTT KL+ + + ++ L D +R A +QL+I+ Sbjct: 270 LLDRGGVYALVGPTGVGKTTTTAKLAARCVVRHGAGRLALITTDGYRIGAQEQLRIYGRI 329 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQA--KKVDVLIIDTAGRLHNNSI------LMAGIG 216 +D +Q A + +++IDT G + + +++G G Sbjct: 330 LGVPVFSVRDAAD--------LRQTLAGLRNKHMVLIDTMGMSQRDRMVAEQAAMLSGAG 381 Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276 + R+L +L+AT + L V +A G I TK+D A + Sbjct: 382 DVRRLL-------------LLNATARGDTLDDVVRAYAGGDLAGCIFTKVDEAASLAPAL 428 Query: 277 PIVVTHKIPVYFLGVGEGIND 297 + V H++ + +L G+ + + Sbjct: 429 DVAVRHELDIRYLTNGQRVPE 449 >gi|220917695|ref|YP_002492999.1| GTP-binding signal recognition particle SRP54 G- domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955549|gb|ACL65933.1| GTP-binding signal recognition particle SRP54 G- domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 380 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 93/217 (42%), Gaps = 20/217 (9%) Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL-SKKMSDAGLK 141 R V +L+ + L+P P+ D VI VG GVGKTT + K+ ++ + + + Sbjct: 162 RAWRAVKDLLGERLVPCRAPWLHDGRR---VIAAVGPTGVGKTTTLAKVAARALLETRKR 218 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 V DT+R +QL +A V + G AL + VD++++D Sbjct: 219 VAFVTVDTYRLGGAEQLARYAGIMEVPVLVARDRGELGRAL-------ERLSDVDLVLLD 271 Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 TAG H + + ++R + R+ H L V A + + A+A Sbjct: 272 TAG--HASVEDVERQAALVRSVPRVQLH-----LTVSAAAGALELAAVADRYRALAPDR- 323 Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 L++TK+D A G ++ V P+ + G+ + + Sbjct: 324 LVLTKLDEAAGPGSVLSAAVRVCRPIACVTNGQRVPE 360 >gi|13541605|ref|NP_111293.1| GTPase [Thermoplasma volcanium GSS1] gi|14325004|dbj|BAB59930.1| guanylate kinase [Thermoplasma volcanium GSS1] Length = 315 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 14/111 (12%) Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 + ++ + H+I + G GVGK+T+IG LSK +S+ G KV + A D S+ + +R Sbjct: 40 YPYTGKAHIIGITGPPGVGKSTMIGILSKMLSEHGKKVSILAVDA--SSPFSGGTLLGNR 97 Query: 165 TSADFVCSEIGSDAAALAYEAF------------KQAQAKKVDVLIIDTAG 203 + S+ G ++A F K A D +II+T G Sbjct: 98 IRMQEILSKYGIYMRSVANRGFTGGLSRSTWNIVKVLDASGSDYIIIETVG 148 >gi|84683571|ref|ZP_01011474.1| putative branched-chain amino acid ABC transporter, ATP-binding protein [Maritimibacter alkaliphilus HTCC2654] gi|84668314|gb|EAQ14781.1| putative branched-chain amino acid ABC transporter, ATP-binding protein [Rhodobacterales bacterium HTCC2654] Length = 254 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 7/114 (6%) Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 ++G NG GKTT++G+LS ++ +V++ D R A + ++ RT F S + Sbjct: 35 LIGPNGAGKTTLVGQLSGVIAPTSGQVLIGGEDVTRLAPAKRTRMGLVRT---FQISNLF 91 Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 +D L +Q +++ V AGR +SI A +IR + RL+PHA Sbjct: 92 TDMTVLENVYLAVSQNRRMGVNPFRAAGR-DKDSIDRA--MDLIRKV-RLEPHA 141 >gi|311695195|gb|ADP98068.1| flagellar biosynthesis regulator FlhF [marine bacterium HP15] Length = 435 Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust. Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 36/195 (18%) Query: 116 VVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWA----------- 162 +VG G GKTT IGKL+ + + V L D +R AA +QL ++ Sbjct: 229 LVGPTGSGKTTTIGKLAARYVLKHGSDSVALVTTDRYRVAAHEQLFVFGRILNVPVRVVD 288 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 + S D + E+ SD +++IDTAG + + ++ R Sbjct: 289 ESHSLDDILDEL-SDR----------------HLVLIDTAGLTSADKGYQEQLAELARSH 331 Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 + H V+ AT+ ++ V + +A G +MTK+D G + V+ Sbjct: 332 HNIKTHL------VVSATSQPRIMKSVWHCYKMANLAGCLMTKIDEALTLGESLGFVMET 385 Query: 283 KIPVYFLGVGEGIND 297 +PV + G+ I + Sbjct: 386 GLPVAYYTDGQKIPE 400 >gi|206889549|ref|YP_002249861.1| flagellar GTP-binding protein, putative [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741487|gb|ACI20544.1| flagellar GTP-binding protein, putative [Thermodesulfovibrio yellowstonii DSM 11347] Length = 347 Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust. Identities = 71/287 (24%), Positives = 121/287 (42%), Gaps = 42/287 (14%) Query: 12 SW------IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 SW +++ K A SL L+E IT + S LDD + L + LI++++ +A Sbjct: 71 SWKFDHGVFKEIEKLKAEVSL-LRESITKLFPS--LDDISKRGLYNFLIKNNVEPYLALM 127 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 ++E+ A D++ R+ + +EL K +F I G+ GVGKT Sbjct: 128 LLEK------ANDMNELRMAIE-NEL---------KTCRNNFDEEKGYIFY-GLPGVGKT 170 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T I K+ + + D K+ML + D R +++ +K + C + Y+ Sbjct: 171 TTIFKIGQSLKDNNKKIMLISLDQ-RISSVAYIK----EVALKLKCEAKFINEPKELYKI 225 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + KK L+IDT G ++ I +AG LK L P ++DA+ + Sbjct: 226 MHKEIDKK--NLLIDTPGDVN---ISLAG------ELKNLLKDMPIKKCLIMDASMSMQS 274 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292 ++ A + +K+D G L + V PV F+ G Sbjct: 275 SFKILKTMDTASVDCIGFSKIDLAQTYGNLYNLSVLSGKPVSFITSG 321 >gi|317493996|ref|ZP_07952412.1| ABC transporter [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917769|gb|EFV39112.1| ABC transporter [Enterobacteriaceae bacterium 9_2_54FAA] Length = 555 Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 94/229 (41%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + ++ R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNVEYQKRNETSELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E + L+K Y + LI + L K ++ ++G N Sbjct: 319 LGDKVLEVQNLSKSYGDRL-----------LIEDLSFSLPKG---------AIVGIIGPN 358 Query: 121 GVGKTTVIGKLSKKMS------DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S K D G V+LA+ D FR + D+ +W + ++ + Sbjct: 359 GAGKSTLFRMISGKEQPDSGTIDLGETVVLASVDQFRDSMDDKKTVWEEVSNGQDIMRIG 418 Query: 175 GSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 + + AY FK Q K+V L GRLH +L G G M+ Sbjct: 419 NFEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466 >gi|268679515|ref|YP_003303946.1| DNA repair protein RadA [Sulfurospirillum deleyianum DSM 6946] gi|268617546|gb|ACZ11911.1| DNA repair protein RadA [Sulfurospirillum deleyianum DSM 6946] Length = 450 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 30/130 (23%) Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD----FV 170 L+ G GVGK+T++ K++ ++ G KV+ +G+ S Q+K+ A+R ++ ++ Sbjct: 94 LIGGSPGVGKSTLLLKIAGNLAREGKKVLYVSGEESSS----QIKLRANRVDSNYPTLYL 149 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 SEI D FK+ + +VLIID+ +++ I AP Sbjct: 150 LSEIRLDT------IFKELEKHAFEVLIIDSIQTIYSEKI----------------SSAP 187 Query: 231 HSVLQVLDAT 240 SV QV + T Sbjct: 188 GSVSQVREIT 197 >gi|229824207|ref|ZP_04450276.1| hypothetical protein GCWU000282_01511 [Catonella morbi ATCC 51271] gi|229786561|gb|EEP22675.1| hypothetical protein GCWU000282_01511 [Catonella morbi ATCC 51271] Length = 513 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 13/161 (8%) Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 R +++ ++L PL+KP + F R + ++G NG+GKTT++ L + G +V Sbjct: 323 RFIFEANQLEIGYSQPLTKPLDLVFE-RNQKVAIIGANGIGKTTLLKSLMGLIPALGGQV 381 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202 GD +Q +R + +A A+ A QA+ + T+ Sbjct: 382 --EQGDYLEIGYFEQEVASGNRQTP--------LEAVWNAFPAMNQAEVRAALARCGLTS 431 Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 + + +++G G+ +V L +APH+VL +LD T Sbjct: 432 KHIESQIQVLSG-GEQAKVRLCLLMNAPHNVL-ILDEPTNH 470 >gi|226329252|ref|ZP_03804770.1| hypothetical protein PROPEN_03155 [Proteus penneri ATCC 35198] gi|225202438|gb|EEG84792.1| hypothetical protein PROPEN_03155 [Proteus penneri ATCC 35198] Length = 548 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 93/229 (40%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + K + L WIR+ KG + K K + +D R E +L I G Sbjct: 257 ARHKSIQKELEWIRQNPKGRQA---KGKARLARFEELNSVDYQKRNETSELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E LTK Y RVL D + S P + ++ ++G N Sbjct: 312 LGDKVLEINNLTKSYG-----DRVLIDD--------LSFSIP-------KGAIVGIIGPN 351 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ +S ++ D+G V+ LA+ D FR + D +W + + + Sbjct: 352 GAGKSTLFRMISGQEQPDSGTLVLGDTVKLASVDQFRDSMDDSKTVWEEVSGGQDIMRIG 411 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 EI S A + Q K+V L GRLH +L G G M+ Sbjct: 412 NFEIPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 459 >gi|169839025|ref|ZP_02872213.1| Signal recognition particle, subunit FFH/SRP54 [candidate division TM7 single-cell isolate TM7a] Length = 99 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 28/50 (56%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 P ++++ G+ G GKTT GKL+K + G K L D +R AA +K Sbjct: 37 NPTIVMLSGLQGAGKTTFSGKLAKHLKSKGEKPFLIGADVYRPAAKKAIK 86 >gi|172036405|ref|YP_001802906.1| hypothetical protein cce_1490 [Cyanothece sp. ATCC 51142] gi|171697859|gb|ACB50840.1| hypothetical protein cce_1490 [Cyanothece sp. ATCC 51142] Length = 345 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 15/134 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169 V ++ G G GKTT++ ++ + GLKV + + F ID QL + + + Sbjct: 34 VTIITGFLGSGKTTLLNQILD--NKEGLKVAVLVNE-FGDINIDSQLLVSVEEDMVELGN 90 Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +C I Y ++ KVD LII+T G I++ +G ++ L R+D Sbjct: 91 GCICCTINDSLIEAVYRVLEKEN--KVDYLIIETTGLADPLPIILTFLGTELKFLTRID- 147 Query: 228 HAPHSVLQVLDATT 241 S++ V+DA T Sbjct: 148 ----SIITVVDAET 157 >gi|16332336|ref|NP_443064.1| 47 kD protein [Synechocystis sp. PCC 6803] gi|1653966|dbj|BAA18876.1| 47 kD protein [Synechocystis sp. PCC 6803] Length = 383 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 10/119 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169 V ++ G G GKTT++ + GLK + + F ID +L I +D+ + Sbjct: 23 VTIITGFLGSGKTTLLNYILSNQQ--GLKTAVLVNE-FGEIGIDNELVIASDKNMVELSN 79 Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 VC I D Y+ ++ Q K+D L+++T G + + +G +R + RLD Sbjct: 80 GCVCCTINEDLVEAVYKVLEREQ--KIDYLVVETTGLADPLPVALTFLGTELRDMTRLD 136 >gi|300869600|ref|ZP_07114180.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] gi|300332378|emb|CBN59380.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] Length = 358 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 15/134 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169 V ++ G G GKTT++ ++ K D + V++ + F ID QL I D + Sbjct: 22 VTIITGFLGSGKTTLLNQILKNKQDLKVAVLV---NEFGDINIDSQLLISTDDDMVELTN 78 Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +C I Y ++ ++D ++I+T G I++ +G +R L LD Sbjct: 79 GCICCTINDGLLDAVYRVLERDD--RIDYMVIETTGVADPLPIILTFVGTELRDLTNLD- 135 Query: 228 HAPHSVLQVLDATT 241 SVL V+DA T Sbjct: 136 ----SVLTVIDAET 145 >gi|282899564|ref|ZP_06307528.1| Cobalamin synthesis protein/P47K [Cylindrospermopsis raciborskii CS-505] gi|281195443|gb|EFA70376.1| Cobalamin synthesis protein/P47K [Cylindrospermopsis raciborskii CS-505] Length = 357 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 20/155 (12%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169 V ++ G G GKTT++ + V++ + F ID +L + D + Sbjct: 21 VTIITGFLGSGKTTLLNHILTNQQGVKTAVLV---NEFGEIGIDNELIVTTDDNMVELSN 77 Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +C I +D Y+ ++ + K+D L+++T G + M +G +R L RLD Sbjct: 78 GCICCTINNDLVDAVYQVLEREE--KIDYLVVETTGLADPLPVAMTFLGSELRDLTRLD- 134 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 S++ V+DA A +++F++ A + ++ Sbjct: 135 ----SIITVVDA-----ANYSLDLFNSQAAHSQIV 160 >gi|309808818|ref|ZP_07702703.1| SRP54-type protein, helical bundle domain protein [Lactobacillus iners LactinV 01V1-a] gi|308167944|gb|EFO70077.1| SRP54-type protein, helical bundle domain protein [Lactobacillus iners LactinV 01V1-a] Length = 134 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 12/122 (9%) Query: 21 FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F + S KL++ + + IS ++ RE + L+ +D+ V +K ++ + + Sbjct: 3 FENLSEKLQKALRKLTGKGKISENDINQASRE-IRLALLEADVNFKVVKKFIKTIKAEAL 61 Query: 76 AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K+V Q+++ V++ + KM+ + + H P +I++VG+ G GKTT +GK Sbjct: 62 GKEVQESLNPGQQIIKIVNDELTKMMGSDTASI-IEAKHIPTIIMMVGLQGTGKTTTVGK 120 Query: 131 LS 132 L+ Sbjct: 121 LA 122 >gi|188026522|ref|ZP_02962442.2| hypothetical protein PROSTU_04560 [Providencia stuartii ATCC 25827] gi|188019277|gb|EDU57317.1| hypothetical protein PROSTU_04560 [Providencia stuartii ATCC 25827] Length = 548 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 92/225 (40%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L WIR+ KG + K K + ++ R E +L I G Sbjct: 257 ARRKSIEKELEWIRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E E L+K Y RVL D N FS + ++ ++G Sbjct: 312 LGDKVIEVENLSKSYG-----DRVLID----------------NLSFSIPKGAIVGIIGP 350 Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172 NG GK+T+ +S ++ D+G V +A+ D FR + D +W + ++ + Sbjct: 351 NGAGKSTLFRMISGQEQPDSGTITLGDTVKIASVDQFRDSMDDSKTVWEEISNGQDIMRI 410 Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 411 GNFEIPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 455 >gi|194290899|ref|YP_002006806.1| ABC transporter ATP-binding protein [Cupriavidus taiwanensis LMG 19424] gi|193224734|emb|CAQ70745.1| putative ATPase component of ABC transporter with duplicated ATPase domains [Cupriavidus taiwanensis LMG 19424] Length = 555 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 71/171 (41%), Gaps = 27/171 (15%) Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPF-------NWDFSHRPHVIL-V 116 +EL ++ Y K Q + V E + ++ SK F N F P I+ + Sbjct: 295 DELNSQEYQKRNETQEIFIPVGERLGNEVIEFDNVSKGFGDRMLIENLSFKVPPGAIVGI 354 Query: 117 VGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 +G NG GK+T L+ K+ D+G + G T + A +DQ + D T F G Sbjct: 355 IGPNGAGKSTFFKMLTGKEQPDSG---EIKIGPTVKMAFVDQSRDALDGTKTVFEEISGG 411 Query: 176 SDAAALA-YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214 +D + YE +A Q K+V L GRLH L+AG Sbjct: 412 ADVLTVGRYETPSRAYIGRFNFKGGDQQKQVGTLSGGERGRLHMAKTLIAG 462 >gi|73542750|ref|YP_297270.1| putative ABC transporter ATP-binding protein [Ralstonia eutropha JMP134] gi|72120163|gb|AAZ62426.1| ABC transporter related [Ralstonia eutropha JMP134] Length = 555 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 71/171 (41%), Gaps = 27/171 (15%) Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPF-------NWDFSHRPHVIL-V 116 +EL ++ Y K Q + V E + ++ SK F N F P I+ + Sbjct: 295 DELNSQEYQKRNETQEIFIPVGERLGNEVIEFDNVSKGFGDRMLIENLSFKVPPGAIVGI 354 Query: 117 VGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 +G NG GK+T L+ K+ D+G + G T + A +DQ + D T F G Sbjct: 355 IGPNGAGKSTFFKMLTGKEQPDSG---EIKIGPTVKMAFVDQSRDALDGTKTVFEEISGG 411 Query: 176 SDAAALA-YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214 +D + YE +A Q K+V L GRLH L+AG Sbjct: 412 ADVLTVGRYETPSRAYIGRFNFKGGDQQKQVGTLSGGERGRLHMAKTLIAG 462 >gi|118475538|ref|YP_891692.1| DNA repair protein RadA [Campylobacter fetus subsp. fetus 82-40] gi|118414764|gb|ABK83184.1| DNA repair protein RadA [Campylobacter fetus subsp. fetus 82-40] Length = 446 Score = 40.0 bits (92), Expect = 0.41, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 58/105 (55%), Gaps = 14/105 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168 ++L+ G G+GK+T++ K+ ++++G KV+ +G+ + Q+K+ A+R A+ Sbjct: 91 LVLIGGSPGIGKSTLLLKIGSNLANSGEKVLYVSGEESST----QIKLRANRLDANSENL 146 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 ++ +EI D+ + K+ VLIID+ L+++ I A Sbjct: 147 YLLTEINLDS------ILAEISKKEYKVLIIDSIQTLYSDKITSA 185 >gi|197287515|ref|YP_002153387.1| ABC transporter ATP-binding protein [Proteus mirabilis HI4320] gi|194685002|emb|CAR47234.1| ABC transporter ATP-binding component [Proteus mirabilis HI4320] Length = 555 Score = 40.0 bits (92), Expect = 0.41, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 92/229 (40%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + K + L WIR+ KG + K K + +D R E +L I G Sbjct: 264 ARHKSIQKELEWIRQNPKGRQA---KGKARLARFEELNSVDYQKRNETSELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E LTK Y RVL D + S P + ++ ++G N Sbjct: 319 LGDKVLEVSHLTKSYG-----DRVLIDD--------LSFSIP-------KGAIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ +S ++ D+G V LA+ D FR + D +W + + + Sbjct: 359 GAGKSTLFRMISGQEQPDSGTVTLGETVKLASVDQFRDSMDDSKTVWEEVSGGQDIMRIG 418 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 EI S A + Q K+V L GRLH +L G G M+ Sbjct: 419 NFEIPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466 >gi|119897396|ref|YP_932609.1| flagellar biosynthesis regulator FlhF [Azoarcus sp. BH72] gi|119669809|emb|CAL93722.1| putative flagellar biosynthesis protein FlhF [Azoarcus sp. BH72] Length = 510 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 47/202 (23%), Positives = 85/202 (42%), Gaps = 31/202 (15%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163 D R V +VG GVGKTT KL+ + + K+ L D +R A +QL+I+ Sbjct: 289 DLIDRGGVFALVGPTGVGKTTTTAKLAARCVVRHGASKLALITTDGYRIGAQEQLRIYGR 348 Query: 164 RTSADFVCSEIGSDAAALAYEAFKQ--AQAKKVDVLIIDTAG------RLHNNSILMAGI 215 +D +Q A+ + +++IDT G + + ++ G Sbjct: 349 ILGVPVFSVRDAAD--------LRQTLAELRNKHMVLIDTMGVSQRDRMVAEQAAMLTGA 400 Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275 G++ R+L +L+AT + L V +A G+I +K+D A Sbjct: 401 GEVRRLL-------------LLNATCRGDTLDDVVRAYAGPDLAGVIFSKVDEAASLAPA 447 Query: 276 IPIVVTHKIPVYFLGVGEGIND 297 I + V K+ + ++ G+ + + Sbjct: 448 IDVAVRRKLDLLYVTNGQRVPE 469 >gi|227358224|ref|ZP_03842565.1| ABC superfamily ATP binding cassette transporter, ABC protein [Proteus mirabilis ATCC 29906] gi|227161560|gb|EEI46597.1| ABC superfamily ATP binding cassette transporter, ABC protein [Proteus mirabilis ATCC 29906] Length = 548 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 92/229 (40%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + K + L WIR+ KG + K K + +D R E +L I G Sbjct: 257 ARHKSIQKELEWIRQNPKGRQA---KGKARLARFEELNSVDYQKRNETSELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E LTK Y RVL D + S P + ++ ++G N Sbjct: 312 LGDKVLEVSHLTKSYG-----DRVLIDD--------LSFSIP-------KGAIVGIIGPN 351 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ +S ++ D+G V LA+ D FR + D +W + + + Sbjct: 352 GAGKSTLFRMISGQEQPDSGTVTLGETVKLASVDQFRDSMDDSKTVWEEVSGGQDIMRIG 411 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 EI S A + Q K+V L GRLH +L G G M+ Sbjct: 412 NFEIPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 459 >gi|171910580|ref|ZP_02926050.1| hypothetical protein VspiD_05390 [Verrucomicrobium spinosum DSM 4136] Length = 386 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 49/114 (42%), Gaps = 12/114 (10%) Query: 95 MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 M P P + R I++ G G GKTT IGKL++ ++D GLKV L D ++ Sbjct: 1 MSAPAPTPTSSPTKAR--YIMIGGFLGAGKTTAIGKLARHLTDQGLKVGLITND--QAGG 56 Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK-----KVDVLIIDTAG 203 + K+ RT F EI + A AK K DV I + G Sbjct: 57 LVDTKLL--RTQG-FATEEIAGGCFCCRFNTLVDAAAKLNDATKPDVFIAEPVG 107 >gi|290476502|ref|YP_003469407.1| putative ABC transporter ATP-binding protein [Xenorhabdus bovienii SS-2004] gi|289175840|emb|CBJ82643.1| putative transport protein (ABC superfamily, atp_bind) [Xenorhabdus bovienii SS-2004] Length = 555 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 92/229 (40%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L WIR+ KG + K K + +D R E +L I G Sbjct: 264 ARRKSIEKELEWIRQNPKGRQA---KGKARLARFEELNNVDYQKRNETSELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E LTK Y V LI + L K ++ ++G N Sbjct: 319 LGDKVLEVTNLTKSYGDRV-----------LIDNLSFALPKG---------AIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G V LA+ + FR + D+ +W + + + Sbjct: 359 GAGKSTLFRMLSGQEQPDSGSITLGETVTLASVEQFRDSMDDKKTVWEEVSGGQDIMRIG 418 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 EI S A + Q K+V L GRLH +L G G M+ Sbjct: 419 NFEIPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466 >gi|163750018|ref|ZP_02157262.1| ABC transporter, ATP-binding protein [Shewanella benthica KT99] gi|161330292|gb|EDQ01273.1| ABC transporter, ATP-binding protein [Shewanella benthica KT99] Length = 555 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 34/170 (20%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L WIR+ KG S ++ SS D R E +L I G Sbjct: 264 ARQKTIAKELEWIRQGAKGRQSKGKARMARFEELNSS---DYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E + LTK Y RVL D N FS + ++ ++G Sbjct: 319 LGDKVIEVKNLTKSYG-----DRVLID----------------NLSFSVPKGAIVGIIGA 357 Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWAD 163 NG GK+T+ ++ + D+G V LA+ D FR + D+ +W + Sbjct: 358 NGAGKSTLFKMITGAEQPDSGTIEIGESVKLASVDQFRDSMDDKKTVWQE 407 >gi|126658691|ref|ZP_01729836.1| hypothetical protein CY0110_32055 [Cyanothece sp. CCY0110] gi|126619953|gb|EAZ90677.1| hypothetical protein CY0110_32055 [Cyanothece sp. CCY0110] Length = 346 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 15/132 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169 V ++ G G GKTT++ ++ + + + V++ + F ID QL I D + Sbjct: 22 VTIITGFLGSGKTTLLNQILQNKDNLKIAVLV---NEFGDINIDEQLLISVDSDMIELDN 78 Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +C I Y ++ + KVD L+I+T G I++ +G ++ L RLD Sbjct: 79 GCICCTINDGLVNAVYRVLEREE--KVDYLVIETTGLADPLPIILTFLGTELKFLTRLD- 135 Query: 228 HAPHSVLQVLDA 239 +++ V+DA Sbjct: 136 ----AIITVVDA 143 >gi|126175364|ref|YP_001051513.1| putative ABC transporter ATP-binding protein [Shewanella baltica OS155] gi|160876412|ref|YP_001555728.1| putative ABC transporter ATP-binding protein [Shewanella baltica OS195] gi|125998569|gb|ABN62644.1| ABC transporter related [Shewanella baltica OS155] gi|160861934|gb|ABX50468.1| ABC transporter related [Shewanella baltica OS195] gi|315268602|gb|ADT95455.1| ABC transporter related protein [Shewanella baltica OS678] Length = 555 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG S ++ ++ D R E +L I G Sbjct: 264 ARQKTIAKELEWVRQGPKGRQSKGKARMARFEELNTN---DYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E LTK Y RVL D N FS + ++ ++G Sbjct: 319 LGDKVIEVNNLTKSYG-----DRVLID----------------NLSFSVPKGAIVGIIGA 357 Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172 NG GK+T+ LS + D+G V LA+ + FR + D+ IW + + + Sbjct: 358 NGAGKSTLFRMLSGAETPDSGTIELGDTVQLASVEQFRDSMNDKNTIWEEISGGQDIMRI 417 Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K + L R+H +L AG Sbjct: 418 NNMEIPSRAYVGRFNFRGGDQQKVIGTLSGGERNRVHLAKLLQAG 462 >gi|121997282|ref|YP_001002069.1| GTP-binding signal recognition particle [Halorhodospira halophila SL1] gi|121588687|gb|ABM61267.1| GTP-binding signal recognition particle SRP54, G- domain [Halorhodospira halophila SL1] Length = 585 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 28/194 (14%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V +VG GVGKTT + KL+ + + +V L + D +R A DQL +A Sbjct: 370 VYALVGPTGVGKTTTVAKLAARYALRHGREQVALVSTDNYRVGAQDQLLTYARILDVPV- 428 Query: 171 CSEIGSDAAALAYEAFKQAQAKKV-------DVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 Y A + + + + +++IDT G + + +A K + + Sbjct: 429 ------------YTATNRHELRTIVDDLMDRGLVLIDTVG-MSQRDVRLAEQFKTLGSAE 475 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 L VL A T L + A A G I TK+D + GG + + K Sbjct: 476 GL-----VKTYLVLSAATQMATLTESVSAFAGAEPVGCIFTKVDEASSLGGAMTCALRTK 530 Query: 284 IPVYFLGVGEGIND 297 +P+ +L VG+ + + Sbjct: 531 LPIAYLAVGQRVPE 544 >gi|120598054|ref|YP_962628.1| putative ABC transporter ATP-binding protein [Shewanella sp. W3-18-1] gi|120558147|gb|ABM24074.1| ABC transporter related [Shewanella sp. W3-18-1] gi|319427247|gb|ADV55321.1| REG family ATPase, YjjK [Shewanella putrefaciens 200] Length = 555 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG S ++ ++ D R E +L I G Sbjct: 264 ARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTN---DYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E LTK Y RVL D N FS + ++ ++G Sbjct: 319 LGDKVIEVNNLTKSYG-----DRVLID----------------NLSFSVPKGAIVGIIGA 357 Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172 NG GK+T+ LS + D+G V LA+ + FR + D+ IW + + + Sbjct: 358 NGAGKSTLFRMLSGAETPDSGTIELGETVQLASVEQFRDSMNDKNTIWQEISGGQDIMRI 417 Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K + L R+H +L AG Sbjct: 418 NNMEIPSRAYVGRFNFRGADQQKIIGTLSGGERNRVHLAKLLQAG 462 >gi|304410194|ref|ZP_07391813.1| ABC transporter related protein [Shewanella baltica OS183] gi|307302095|ref|ZP_07581853.1| ABC transporter related protein [Shewanella baltica BA175] gi|304351603|gb|EFM16002.1| ABC transporter related protein [Shewanella baltica OS183] gi|306914133|gb|EFN44554.1| ABC transporter related protein [Shewanella baltica BA175] Length = 555 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG S ++ ++ D R E +L I G Sbjct: 264 ARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTN---DYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E LTK Y RVL D N FS + ++ ++G Sbjct: 319 LGDKVIEVNNLTKSYG-----DRVLID----------------NLSFSVPKGAIVGIIGA 357 Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172 NG GK+T+ LS + D+G V LA+ + FR + D+ IW + + + Sbjct: 358 NGAGKSTLFRMLSGAETPDSGTIELGDTVQLASVEQFRDSMNDKNTIWEEISGGQDIMRI 417 Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K + L R+H +L AG Sbjct: 418 NNMEIPSRAYVGRFNFRGGDQQKVIGTLSGGERNRVHLAKLLQAG 462 >gi|88860933|ref|ZP_01135569.1| adenosine 5'-phosphosulfate kinase [Pseudoalteromonas tunicata D2] gi|88817146|gb|EAR26965.1| adenosine 5'-phosphosulfate kinase [Pseudoalteromonas tunicata D2] Length = 198 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 23/44 (52%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 HRP +I G +G GK+TV G L + AG+ L GD R Sbjct: 22 QHRPCIIWFTGFSGSGKSTVAGALEHALHQAGVHTYLLDGDNVR 65 >gi|167760716|ref|ZP_02432843.1| hypothetical protein CLOSCI_03101 [Clostridium scindens ATCC 35704] gi|167661603|gb|EDS05733.1| hypothetical protein CLOSCI_03101 [Clostridium scindens ATCC 35704] Length = 518 Score = 39.7 bits (91), Expect = 0.55, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 106 DFSHRPHVILVVGVNGVGKTTVIG----KLSKKMSDAGLKVMLAAGDTFRSAAIDQ-LKI 160 D +P V + G+NG+GK+TV+ +L + ++ + L+ D+F S ID+ + Sbjct: 21 DMPLKPDVYAITGINGIGKSTVLSSIAPRLVRPINFSMLRPFDYTDDSFISFTIDENTEK 80 Query: 161 WADRTSADFVCS 172 W +T+ + CS Sbjct: 81 WQPQTNGRWTCS 92 >gi|218192281|gb|EEC74708.1| hypothetical protein OsI_10425 [Oryza sativa Indica Group] Length = 505 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 5/68 (7%) Query: 99 LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF----RSAA 154 +S+ F + HRP++I +G G+ I ++ K SD G+K + DTF RSA+ Sbjct: 78 VSRAFRRSWQHRPNLIFCIGTLGLDFINKIDRIIKNHSDIGIKSLQLEYDTFCNARRSAS 137 Query: 155 ID-QLKIW 161 I L W Sbjct: 138 ISYHLNNW 145 >gi|91227653|ref|ZP_01261930.1| ABC transporter, ATP-binding protein [Vibrio alginolyticus 12G01] gi|254230252|ref|ZP_04923643.1| ABC transporter, ATP-binding protein [Vibrio sp. Ex25] gi|262395171|ref|YP_003287025.1| ABC transporter ATP-binding protein [Vibrio sp. Ex25] gi|91188432|gb|EAS74726.1| ABC transporter, ATP-binding protein [Vibrio alginolyticus 12G01] gi|151937232|gb|EDN56099.1| ABC transporter, ATP-binding protein [Vibrio sp. Ex25] gi|262338765|gb|ACY52560.1| ABC transporter ATP-binding protein [Vibrio sp. Ex25] Length = 555 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 30/178 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+RK KG + S ++ SS D R E +L I G Sbjct: 264 ARQKTIEKELEWVRKNPKGRQAKSKARMARFEELQSS---DHQKRNETNELFIPP--GER 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E + LTK + RVL D + S P + ++ ++G N Sbjct: 319 LGDKVIEVKNLTKSFDG-----RVLIDD--------LSFSIP-------KGAIVGIIGAN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 G GK+T+ LS + D+G M GDT + A++DQ + D + F G+D Sbjct: 359 GAGKSTLFKMLSGTEQPDSGTIEM---GDTVKLASVDQFRDSMDDSKTVFQEISEGAD 413 >gi|1213500|gb|AAC44500.1| signal recognition particle protein [Streptococcus mutans] Length = 142 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 33/142 (23%), Positives = 71/142 (50%), Gaps = 11/142 (7%) Query: 20 GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75 F S + +L+ ++ R+L + V +E+ L+ +D+ + VA++ ++ + + Sbjct: 2 AFESLTERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVAKEFIKRVRKRAV 61 Query: 76 AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 +V Q+++ V+E + +L + S P +I++VG+ G GKTT GK Sbjct: 62 GHEVIDTLDPSQQIIKIVNEELTAVLGSETAEIEKS-SKIPTIIMMVGLQGAGKTTFAGK 120 Query: 131 LSKKM-SDAGLKVMLAAGDTFR 151 L+ K+ + + ++ A D +R Sbjct: 121 LANKLVKEENARPLMIAADIYR 142 >gi|225012383|ref|ZP_03702819.1| DNA repair protein RadA [Flavobacteria bacterium MS024-2A] gi|225003360|gb|EEG41334.1| DNA repair protein RadA [Flavobacteria bacterium MS024-2A] Length = 450 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 17/102 (16%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168 VIL+ G G+GK+T++ ++S ++ V+ +G+ + Q+K+ ADR D Sbjct: 91 VILLGGEPGIGKSTLLLQVSLSLNST---VLYVSGEESQ----QQIKLRADRMELDGKKC 143 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 FV S+ + + F+Q Q K D++I+D+ LH+N I Sbjct: 144 FVLSQTETQ------KIFQQIQKVKPDLVIVDSIQTLHSNYI 179 >gi|281418344|ref|ZP_06249364.1| DNA repair protein RadA [Clostridium thermocellum JW20] gi|281409746|gb|EFB40004.1| DNA repair protein RadA [Clostridium thermocellum JW20] Length = 454 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 31/134 (23%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +ILV G G+GK+T++ ++ K+ K++ +G+ +I+Q+K+ ADR + Sbjct: 89 LILVGGDPGIGKSTLLLQICDKIK-TNAKILYVSGE----ESINQIKLRADRLNVR---- 139 Query: 173 EIGSDAAALAYEAFKQAQA----KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + L+ FK QA ++ D+++ID+ + N+ + P Sbjct: 140 --NPNLLMLSETNFKVIQALSETERPDLIVIDSIQTMFNDEL----------------PS 181 Query: 229 APHSVLQVLDATTG 242 AP SV QV + T+G Sbjct: 182 APGSVSQVREITSG 195 >gi|330860092|emb|CBX70416.1| uncharacterized ABC transporter ATP-binding protein yjjK [Yersinia enterocolitica W22703] Length = 555 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 92/229 (40%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG + K K + ++ R E +L I G Sbjct: 264 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E E L+K Y V LI + L K ++ ++G N Sbjct: 319 LGDKVLEVEHLSKSYGDRV-----------LIDDLTFALPKG---------AIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G V+LA+ D FR D +W + + + Sbjct: 359 GAGKSTLFRMLSGQEQPDSGTISLGDTVLLASVDQFRDNMDDSKTVWEEVSGGQDIMKIG 418 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 EI S A + Q K+V L GR+H +L G G M+ Sbjct: 419 NFEIPSRAYVGRFNFKGIDQGKRVGELSGGERGRIHLAKLLQVG-GNML 466 >gi|282897581|ref|ZP_06305581.1| Cobalamin synthesis protein/P47K [Raphidiopsis brookii D9] gi|281197504|gb|EFA72400.1| Cobalamin synthesis protein/P47K [Raphidiopsis brookii D9] Length = 359 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 20/155 (12%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169 V ++ G G GKTT++ + V++ + F ID +L + D + Sbjct: 23 VTIITGFLGSGKTTLLNHILTNQQGVKTAVLV---NEFGEIGIDNELIVSTDDNMVELSN 79 Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +C I +D Y+ ++ + K+D L+++T G + M G +R L RLD Sbjct: 80 GCICCTINNDLVDAVYQVLEREE--KIDYLVVETTGLADPLPVAMTFFGSELRDLTRLD- 136 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 S++ V+DA A +++F++ A + ++ Sbjct: 137 ----SIITVVDA-----ANYSLDLFNSQAAHSQIV 162 >gi|119774150|ref|YP_926890.1| putative ABC transporter ATP-binding protein [Shewanella amazonensis SB2B] gi|119766650|gb|ABL99220.1| ABC transporter, ATP-binding protein [Shewanella amazonensis SB2B] Length = 555 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK S+ L W+R+ KG S ++ +S D R E +L I G Sbjct: 264 ARQKTISKELEWVRQGAKGRQSKGKARMNRFEELNNS---DYQRRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E LTK Y RVL D N FS + ++ ++G Sbjct: 319 LGDKVIEVRNLTKSYG-----DRVLID----------------NLSFSVPKGAIVGIIGA 357 Query: 120 NGVGKTTVIGKLS-KKMSDA-----GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172 NG GK+T+ LS + D+ G V +A+ + FR + ++ IW + + + Sbjct: 358 NGAGKSTLFRMLSGAEQPDSGEIEIGETVKIASVEQFRDSMNNKATIWEEISGGQDIMRI 417 Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K + L R+H +L AG Sbjct: 418 NNMEIPSRAYVGRFNFRGADQQKIIGTLSGGERNRVHLAKLLQAG 462 >gi|24374978|ref|NP_719021.1| putative ABC transporter ATP-binding protein [Shewanella oneidensis MR-1] gi|24349704|gb|AAN56465.1|AE015783_8 ABC transporter, ATP-binding protein [Shewanella oneidensis MR-1] Length = 555 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG S ++ ++ D R E +L I G Sbjct: 264 ARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTN---DYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E LTK Y RVL D N FS + ++ ++G Sbjct: 319 LGDKVIEVNNLTKSYG-----DRVLID----------------NLSFSVPKGAIVGIIGA 357 Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172 NG GK+T+ LS + D+G V LA+ + FR + D+ IW + + + Sbjct: 358 NGAGKSTLFRMLSGSEQPDSGSIELGETVQLASVEQFRDSMNDKNTIWQEISGGQDIMRI 417 Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K + L R+H +L AG Sbjct: 418 NNMEIPSRAYVGRFNFRGGDQQKIIGTLSGGERNRVHLAKLLQAG 462 >gi|206896257|ref|YP_002246705.1| flagellar GTP-binding protein [Coprothermobacter proteolyticus DSM 5265] gi|206738874|gb|ACI17952.1| flagellar GTP-binding protein [Coprothermobacter proteolyticus DSM 5265] Length = 331 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 48/204 (23%), Positives = 85/204 (41%), Gaps = 36/204 (17%) Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG----DTFRSAAIDQLKIWA 162 F P V++++G GVGKTT KL+ + L+ +++G DTFR+ A++Q K++ Sbjct: 133 FQTFPKVVVLLGPTGVGKTTTAAKLAGYLL---LERNVSSGFVTIDTFRAGAVEQTKLFG 189 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQA-QAKKV-------DVLIIDTAGRLHNNSILMAG 214 A L E ++ Q +KV + +DT GR Sbjct: 190 --------------KAMNLPVEVVRRPHQMQKVLAKLPDAHYVFVDTIGRNPKE------ 229 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGG 273 IGK+ + LD + L+A + +++ E F+ V I+TK+D Sbjct: 230 IGKLTEIKMYLDELEEWIPVLCLNAGLRKEEMQKAFEYFNKVFHIEYFILTKVDEAENIS 289 Query: 274 GLIPIVVTHKIPVYFLGVGEGIND 297 + + + + L G+ + D Sbjct: 290 SAVEFMAENGLKTLALTNGQNVPD 313 >gi|123440950|ref|YP_001004939.1| putative ABC transporter ATP-binding protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332160219|ref|YP_004296796.1| putative ABC transporter ATP-binding protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122087911|emb|CAL10699.1| ABC transporter protein, ATP-binding component [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318607215|emb|CBY28713.1| ABC transporter, ATP-binding protein [Yersinia enterocolitica subsp. palearctica Y11] gi|325664449|gb|ADZ41093.1| putative ABC transporter ATP-binding protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 548 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 92/229 (40%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG + K K + ++ R E +L I G Sbjct: 257 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E E L+K Y V LI + L K ++ ++G N Sbjct: 312 LGDKVLEVEHLSKSYGDRV-----------LIDDLTFALPKG---------AIVGIIGPN 351 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G V+LA+ D FR D +W + + + Sbjct: 352 GAGKSTLFRMLSGQEQPDSGTISLGDTVLLASVDQFRDNMDDSKTVWEEVSGGQDIMKIG 411 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 EI S A + Q K+V L GR+H +L G G M+ Sbjct: 412 NFEIPSRAYVGRFNFKGIDQGKRVGELSGGERGRIHLAKLLQVG-GNML 459 >gi|294141973|ref|YP_003557951.1| ABC transporter ATP-binding protein [Shewanella violacea DSS12] gi|293328442|dbj|BAJ03173.1| ABC transporter, ATP-binding protein [Shewanella violacea DSS12] Length = 555 Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust. Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 34/190 (17%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG S ++ +S D R E +L I G Sbjct: 264 ARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTS---DYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E LTK Y RVL D N FS + ++ ++G Sbjct: 319 LGDKVIEVNNLTKSYG-----DRVLID----------------NLSFSVPKGAIVGIIGA 357 Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 NG GK+T+ ++ ++ D+G V LA+ D FR + D+ +W + + + Sbjct: 358 NGAGKSTLFKMITGEEQPDSGTVEIGESVQLASVDQFRDSMDDKKTVWQEISGGQDIMRI 417 Query: 174 IGSDAAALAY 183 ++ + AY Sbjct: 418 NNTEVPSRAY 427 >gi|238786642|ref|ZP_04630443.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia frederiksenii ATCC 33641] gi|238725010|gb|EEQ16649.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia frederiksenii ATCC 33641] Length = 548 Score = 39.3 bits (90), Expect = 0.70, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 92/229 (40%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG + K K + ++ R E +L I G Sbjct: 257 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E E L+K Y V LI + L K ++ ++G N Sbjct: 312 LGDKVLEVEHLSKSYGDRV-----------LIDDLTFALPKG---------AIVGIIGPN 351 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G V+LA+ D FR D +W + + + Sbjct: 352 GAGKSTLFRMLSGQEQPDSGTISLGDTVLLASVDQFRDNMDDSKTVWEEVSGGQDIMKIG 411 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 EI S A + Q K+V L GR+H +L G G M+ Sbjct: 412 NFEIPSRAYVGRFNFKGIDQGKRVGELSGGERGRIHLAKLLQVG-GNML 459 >gi|153001674|ref|YP_001367355.1| putative ABC transporter ATP-binding protein [Shewanella baltica OS185] gi|217972393|ref|YP_002357144.1| putative ABC transporter ATP-binding protein [Shewanella baltica OS223] gi|151366292|gb|ABS09292.1| ABC transporter related [Shewanella baltica OS185] gi|217497528|gb|ACK45721.1| ABC transporter related [Shewanella baltica OS223] Length = 555 Score = 39.3 bits (90), Expect = 0.72, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 89/225 (39%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG S ++ ++ D R E +L I G Sbjct: 264 ARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTN---DYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E LTK Y RVL D N FS + ++ ++G Sbjct: 319 LGDKVIEVNNLTKSYG-----DRVLID----------------NLSFSVPKGAIVGIIGA 357 Query: 120 NGVGKTTVIGKLSKKMS------DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172 NG GK+T+ LS + + G V LA+ + FR + D+ IW + + + Sbjct: 358 NGAGKSTLFRMLSGAETPDSGSIELGDTVQLASVEQFRDSMNDKNTIWEEISGGQDIMRI 417 Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K + L R+H +L AG Sbjct: 418 NNMEIPSRAYVGRFNFRGGDQQKVIGTLSGGERNRVHLAKLLQAG 462 >gi|306819803|ref|ZP_07453458.1| ABC superfamily ATP binding cassette transporter, ABC protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552172|gb|EFM40108.1| ABC superfamily ATP binding cassette transporter, ABC protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 517 Score = 39.3 bits (90), Expect = 0.74, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 RV+++ +L+ PLSKP N+ R I + G NG+GKTT++ L Sbjct: 323 RVIFETKDLVIGYDKPLSKPINFKLE-RNQKIAITGANGLGKTTLVKSL 370 >gi|110639980|ref|YP_680190.1| DNA repair protein RadA [Cytophaga hutchinsonii ATCC 33406] gi|110282661|gb|ABG60847.1| DNA repair protein [Cytophaga hutchinsonii ATCC 33406] Length = 455 Score = 39.3 bits (90), Expect = 0.77, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 18/100 (18%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 ++L+ G G+GK+T++ +++ K+S +KV+ +G+ + Q+K+ A+R Sbjct: 91 IVLIGGEPGIGKSTLMLQVALKLST--VKVLYVSGE----ESEQQIKMRAERI------- 137 Query: 173 EIGSDAAALAYEA-----FKQAQAKKVDVLIIDTAGRLHN 207 E+ SDA + E FKQ + + +VLIID+ LH+ Sbjct: 138 EVPSDACYILTETSTQNIFKQIEMLQPEVLIIDSIQTLHS 177 >gi|120601711|ref|YP_966111.1| ABC transporter ATP-binding protein [Desulfovibrio vulgaris DP4] gi|120561940|gb|ABM27684.1| ABC transporter related protein [Desulfovibrio vulgaris DP4] Length = 560 Score = 39.3 bits (90), Expect = 0.81, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 16/115 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLK--IWADRTSADF 169 ++ +VG NG GKTT+ ++ + DAG L GDT + A +DQ + + +T + Sbjct: 356 IVGIVGPNGAGKTTLFKMIAGLEQPDAG---TLTVGDTVKLAYVDQNRESLTPGKTVYEL 412 Query: 170 VCS----------EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 + E+ + A + Q Q KKVDVL RLH +L G Sbjct: 413 ISDGYDTVKLGTREVNARAYCSRFNFMGQDQQKKVDVLSGGERNRLHVARMLKEG 467 >gi|332140597|ref|YP_004426335.1| flagellar biosynthesis protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550619|gb|AEA97337.1| flagellar biosynthesis protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 477 Score = 39.3 bits (90), Expect = 0.81, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 21/153 (13%) Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DT+R AA +QL + ++ + A L + Q + +++IDTAG Sbjct: 304 DTYRIAAYEQLATYGKIIGCTVRKAQTSEELADLLF------QLRHKRLVLIDTAGFSQR 357 Query: 208 NSILMAGI-----GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 +S L+ I G+M +V K L V A T AL+++ + +G I Sbjct: 358 DSRLIKQIKQFDNGQMPKVKKYL----------VAQANTQYPALQRIIKAYDDIELSGCI 407 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 TK+D G ++ V +++PV ++ G+ + Sbjct: 408 FTKLDECYSLGEVLSAAVEYQLPVSYVTDGQKV 440 >gi|301109261|ref|XP_002903711.1| ATP-binding Cassette (ABC) Superfamily [Phytophthora infestans T30-4] gi|262096714|gb|EEY54766.1| ATP-binding Cassette (ABC) Superfamily [Phytophthora infestans T30-4] Length = 319 Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 17/110 (15%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 +LVVG NG GK+T++ L+ K A ++ D+FR ++ L+ + SAD+ Sbjct: 64 LLVVGGNGAGKSTLLSILAGKHLTADDTALIFGRDSFRDTTLNALRTF---VSADWGQRS 120 Query: 174 IGSDAAALAYEA--------------FKQAQAKKVDVLIIDTAGRLHNNS 209 + A+AY A + + K + VL ID RLH S Sbjct: 121 VAFATHAMAYSADMAVEEMMTKLQSEHPERRQKLLKVLRIDPKWRLHRLS 170 >gi|313676217|ref|YP_004054213.1| DNA repair protein rada [Marivirga tractuosa DSM 4126] gi|312942915|gb|ADR22105.1| DNA repair protein RadA [Marivirga tractuosa DSM 4126] Length = 454 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 58/102 (56%), Gaps = 16/102 (15%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168 ++L+ G G+GK+T++ +++ ++S+ LKV+ +G+ + Q+K+ ADR D Sbjct: 91 LVLIGGEPGIGKSTLMLQIALQLSN--LKVLYVSGEE----SAQQIKMRADRMEHDSKNC 144 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 F+ +E + + F++ +A D+L+ID+ LH+ I Sbjct: 145 FILTETHT------ADIFREVEALGPDLLVIDSIQTLHSPKI 180 >gi|94312152|ref|YP_585362.1| putative ABC transporter ATP-binding protein [Cupriavidus metallidurans CH34] gi|93356004|gb|ABF10093.1| putative fused transporter subunits of ABC superfamily: ATP-binding components [Cupriavidus metallidurans CH34] Length = 589 Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 70/171 (40%), Gaps = 27/171 (15%) Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPF-------NWDFSHRPHVIL-V 116 +EL ++ Y K Q + V E + ++ SK F N F P I+ + Sbjct: 329 DELNSQEYQKRNETQEIFIPVGERLGNEVIEFDNVSKGFGDRMLIENLSFKVPPGAIVGI 388 Query: 117 VGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 +G NG GK+T L+ K+ D+G + G T + A +DQ + D F G Sbjct: 389 IGPNGAGKSTFFKMLTGKEQPDSG---EIKIGPTVKMAFVDQSRDALDGNKTVFEEISGG 445 Query: 176 SDAAALA-YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214 SD + YE +A Q K+V L GRLH L+AG Sbjct: 446 SDILTVGRYETPSRAYIGRFNFKGGDQQKQVGTLSGGERGRLHMAKTLIAG 496 >gi|16081583|ref|NP_393942.1| hypothetical protein Ta0464 [Thermoplasma acidophilum DSM 1728] gi|10639634|emb|CAC11606.1| conserved hypothetical protein [Thermoplasma acidophilum] Length = 321 Score = 39.3 bits (90), Expect = 0.90, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 30/44 (68%) Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 + + R H+I + G GVGK+T+IG LS+K+++ G KV + A D Sbjct: 40 YGMTGRAHIIGITGPPGVGKSTMIGVLSRKLTEMGKKVSILAVD 83 >gi|83747510|ref|ZP_00944548.1| Hypothetical Protein RRSL_02748 [Ralstonia solanacearum UW551] gi|83725824|gb|EAP72964.1| Hypothetical Protein RRSL_02748 [Ralstonia solanacearum UW551] Length = 589 Score = 38.9 bits (89), Expect = 0.91, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 96/228 (42%), Gaps = 44/228 (19%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG + S K + D ++S+ R E +++ I +G Sbjct: 298 ARQKALKKELEWVRQNPKGRQAKS-KARLARFDELNSQEYQK--RNETQEIFI--PVGER 352 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGV 119 + +++E ++K Y R+L D N +F+ I+ ++G Sbjct: 353 LGNEVIEFTNVSKGYG-----DRLLID----------------NLNFTIPAGAIVGIIGP 391 Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 NG GK+T+ L+ K+ DAG M G T + A +DQ + D + F GSD Sbjct: 392 NGAGKSTLFRMLTGKEQPDAGTIKM---GPTVKLAYVDQSRDALDGSKTVFEEISGGSDI 448 Query: 179 AALA-YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214 + YE +A Q K V L GRLH L+AG Sbjct: 449 LTVGRYETPSRAYIGRFNFKGGDQQKHVGTLSGGERGRLHLAKTLIAG 496 >gi|83591872|ref|YP_425624.1| GTP-binding signal recognition particle [Rhodospirillum rubrum ATCC 11170] gi|83574786|gb|ABC21337.1| GTP-binding signal recognition particle SRP54, G-domain [Rhodospirillum rubrum ATCC 11170] Length = 368 Score = 38.9 bits (89), Expect = 0.92, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 16/168 (9%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 P IL+VG G GKT + KL+ + +G V + D+ R+ A +QL + D Sbjct: 150 PRPILLVGPPGTGKTIAVAKLAARARLSGRAVGVITADSVRAGAQEQLAAFTRILEIDLK 209 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 + G D A +Q + V+ ID+ G + M + +I + P Sbjct: 210 KAR-GPDGLATLVPNMQQ----QFGVIFIDSPGLNPFSQDDMDYLRALISAV-------P 257 Query: 231 HSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLI 276 VL+A G + + +E+ A A G + ++ T++D R GG++ Sbjct: 258 MDAALVLNA--GTDPMEAMEIAEAFAEVGASRILATRLDMARRLGGIL 303 >gi|292489434|ref|YP_003532321.1| putative ABC transporter ATP-binding protein [Erwinia amylovora CFBP1430] gi|292898349|ref|YP_003537718.1| ABC transporter ATP-binding protein [Erwinia amylovora ATCC 49946] gi|291198197|emb|CBJ45303.1| ABC transporter, ATP-binding protein [Erwinia amylovora ATCC 49946] gi|291554868|emb|CBA22767.1| putative ABC transport system, ATP-binding component [Erwinia amylovora CFBP1430] gi|312173601|emb|CBX81855.1| putative ABC transport system, ATP-binding component [Erwinia amylovora ATCC BAA-2158] Length = 555 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 91/226 (40%), Gaps = 40/226 (17%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + D R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTDYQKRNETNELFIPP--GAR 318 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 + K++E VS R Y LI + + K ++ ++G NG Sbjct: 319 LGDKVLE----------VSNLRKSYGDRLLIDDLTFSVPKG---------AIVGIIGPNG 359 Query: 122 VGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFVCS 172 GK+T+ +S ++ D+G V+ GDT + A++DQ + +W + + + Sbjct: 360 AGKSTLFRMMSGQEQPDSGSIVL---GDTVKLASVDQFRDSMDNSKTVWEEVSGGQDIMR 416 Query: 173 EIGSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 S+ + AY FK Q K+V L GRLH +L G Sbjct: 417 IGNSEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462 >gi|146293875|ref|YP_001184299.1| putative ABC transporter ATP-binding protein [Shewanella putrefaciens CN-32] gi|145565565|gb|ABP76500.1| ABC transporter related [Shewanella putrefaciens CN-32] Length = 555 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG S ++ ++ D R E +L I G Sbjct: 264 ARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTN---DYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E LTK Y RVL D N FS + ++ ++G Sbjct: 319 LGDKVIEVNNLTKSYG-----DRVLID----------------NLSFSVPKGAIVGIIGA 357 Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172 NG GK+T+ LS + D+G V LA+ + FR + D+ IW + + + Sbjct: 358 NGAGKSTLFRMLSGAEKPDSGSIELGDTVQLASVEQFRDSMNDKNTIWQEISGGQDIMRI 417 Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K + L R+H +L AG Sbjct: 418 NNMEIPSRAYVGRFNFRGADQQKIIGTLSGGERNRVHLAKLLQAG 462 >gi|315651279|ref|ZP_07904307.1| DNA repair protein RadA [Eubacterium saburreum DSM 3986] gi|315486431|gb|EFU76785.1| DNA repair protein RadA [Eubacterium saburreum DSM 3986] Length = 454 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 35/145 (24%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR----- 164 R ++LV G G+GK+T++ ++ K +SD+ KV+ +G+ ++ Q+K+ A R Sbjct: 88 RGSLVLVGGDPGIGKSTLLLQVCKNISDSKKKVLYISGEE----SLKQIKMRAKRIGDIT 143 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 + F+C ++ + F ++K DV++ID+ + N + Sbjct: 144 ENLSFLCE---TNLNIIKETVF----SEKPDVVVIDSIQTMFNEEV-------------- 182 Query: 225 LDPHAPHSVLQVLDATTGQNALRQV 249 AP SV QV ++T N L QV Sbjct: 183 --ASAPGSVSQVREST---NLLMQV 202 >gi|182412093|ref|YP_001817159.1| putative ABC transporter ATP-binding protein [Opitutus terrae PB90-1] gi|177839307|gb|ACB73559.1| ABC transporter related [Opitutus terrae PB90-1] Length = 561 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 90/226 (39%), Gaps = 44/226 (19%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 QK + L WIRK K + S + L + V E+ + I G + Sbjct: 271 QKAMARELEWIRKSAKARVAKSQARISAYEAM-----LKENVAEKEREFEILIPPGPRLG 325 Query: 64 QKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGVNG 121 +VE + LTK Y ++V + V +F+ P I+ V+G NG Sbjct: 326 NLVVEAQKLTKSYGENVLFENV---------------------NFALPPGGIVGVIGPNG 364 Query: 122 VGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFVCS 172 GKTT+ ++ + D G L GDT + A +DQ + IW + + + Sbjct: 365 AGKTTMFKLITGAEQPDGG---TLRVGDTVKIAHVDQSRESLPDKATIWEAISGGEEILK 421 Query: 173 EIGSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 + + AY A F A Q KKV VL R+H +L +G Sbjct: 422 LANREVNSRAYCAQFGFTGADQQKKVGVLSGGERNRVHLARLLKSG 467 >gi|241664393|ref|YP_002982753.1| ABC transporter ATP-binding protein [Ralstonia pickettii 12D] gi|309782938|ref|ZP_07677658.1| ABC transporter, ATP-binding protein [Ralstonia sp. 5_7_47FAA] gi|240866420|gb|ACS64081.1| ABC transporter related [Ralstonia pickettii 12D] gi|308918362|gb|EFP64039.1| ABC transporter, ATP-binding protein [Ralstonia sp. 5_7_47FAA] Length = 555 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 101/231 (43%), Gaps = 50/231 (21%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG + S K + D ++S+ R E +++ I + G Sbjct: 264 ARQKALKKELEWVRQNPKGRQAKS-KARLARFDELNSQEYQK--RNETQEIFIPA--GER 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGV 119 + +++E + ++K Y R+L D N F+ P I+ ++G Sbjct: 319 LGNEVIEFQNVSKSYG-----DRLLID----------------NLSFTIPPGAIVGIIGP 357 Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD-FVCSEI--G 175 NG GK+T+ ++ K+ D+G + G T + A +DQ + D SAD V EI G Sbjct: 358 NGAGKSTLFRMITGKEQPDSG---TIKIGPTVKLAYVDQSR---DALSADKTVFEEISNG 411 Query: 176 SDAAALA-YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214 SD + YE +A Q K V L GRLH L++G Sbjct: 412 SDILTVGRYETPSRAYIGRFNFKGGDQQKHVGTLSGGERGRLHLAKTLISG 462 >gi|22299819|ref|NP_683066.1| hypothetical protein tlr2276 [Thermosynechococcus elongatus BP-1] gi|22296003|dbj|BAC09828.1| tlr2276 [Thermosynechococcus elongatus BP-1] Length = 352 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 15/132 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADR----TSA 167 V ++ G G GKTT++ + + GLK + + F ID QL + D S Sbjct: 21 VTIITGFLGSGKTTLLNHI--LTNQEGLKTAVLVNE-FGEIGIDNQLLVSQDEGMVELSN 77 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +C I +D Y ++ KVD L+++T G + + +G +R L RLD Sbjct: 78 GCICCTINNDLINAVYRVLERP--DKVDYLVVETTGLADPLPVALTFLGTDLRDLTRLD- 134 Query: 228 HAPHSVLQVLDA 239 S++ V+DA Sbjct: 135 ----SIITVVDA 142 >gi|329298444|ref|ZP_08255780.1| putative ABC transporter ATP-binding protein [Plautia stali symbiont] Length = 555 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 92/224 (41%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + D R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTDYQKRNETNELFIPP--GAR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E + L+K Y RVL D + S P + ++ ++G N Sbjct: 319 LGDKVLEVKNLSKAYG-----DRVLIDD--------LSFSLP-------KGAIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S ++ D+G V LA+ D FR A + +W + + + Sbjct: 359 GAGKSTLFRMMSGQEQPDSGSIELGETVKLASVDQFRDAMDNSKTVWEEVSGGQDIMRIG 418 Query: 175 GSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 ++ + AY FK Q K+V L GRLH +L G Sbjct: 419 NTEMPSRAYVGRFNFKGTDQGKRVGELSGGERGRLHLAKLLQVG 462 >gi|282166383|gb|ADA80399.1| FtsK/SpoIIIE family protein [Staphylococcus epidermidis] Length = 353 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 L+PL K NWD S PH L+ GV G GK+ I L K Sbjct: 108 LIPLMKGVNWDISKEPHA-LITGVTGSGKSMFINYLFK 144 >gi|332346515|gb|AEE59848.1| plasmid partitioning protein ParA [Escherichia coli UMNK88] Length = 238 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 22/109 (20%) Query: 107 FSHRPH---VILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161 F+H + +I VVG N G GKTT+ L+ +++ G +V L GD R+AA K Sbjct: 16 FTHHIYEVAMITVVGGNKGGSGKTTIASNLAIALANKGREVCLLNGDLQRTAA----KHH 71 Query: 162 ADRTSADFVCSEIGSDAAALAYEAFK------QAQAKKVDVLIIDTAGR 204 A+R +A + A E F QA +K D +I+D AGR Sbjct: 72 AEREAAGLL-------PAITLVEKFDNLTQTLQALNEKFDDVIVDVAGR 113 >gi|187930226|ref|YP_001900713.1| putative ABC transporter ATP-binding protein [Ralstonia pickettii 12J] gi|187727116|gb|ACD28281.1| ABC transporter related [Ralstonia pickettii 12J] Length = 555 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 101/231 (43%), Gaps = 50/231 (21%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG + S K + D ++S+ R E +++ I + G Sbjct: 264 ARQKALKKELEWVRQNPKGRQAKS-KARLARFDELNSQEYQK--RNETQEIFIPA--GER 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGV 119 + +++E + ++K Y R+L D N F+ P I+ ++G Sbjct: 319 LGNEVIEFQNVSKSYG-----DRLLID----------------NLSFTIPPGAIVGIIGP 357 Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD-FVCSEI--G 175 NG GK+T+ ++ K+ D+G + G T + A +DQ + D SAD V EI G Sbjct: 358 NGAGKSTLFRMITGKEQPDSG---TIKIGPTVKLAYVDQSR---DALSADKTVFEEISNG 411 Query: 176 SDAAALA-YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214 SD + YE +A Q K V L GRLH L++G Sbjct: 412 SDILTVGRYETPSRAYIGRFNFKGGDQQKHVGTLSGGERGRLHLAKTLISG 462 >gi|127512115|ref|YP_001093312.1| putative ABC transporter ATP-binding protein [Shewanella loihica PV-4] gi|126637410|gb|ABO23053.1| ABC transporter-related protein [Shewanella loihica PV-4] Length = 554 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG S ++ ++ D R E +L I G Sbjct: 264 ARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTN---DYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E LTK Y RVL D N FS + ++ ++G Sbjct: 319 LGDKVIEVNNLTKSYG-----DRVLID----------------NLSFSVPKGAIVGIIGA 357 Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVC-- 171 NG GK+T+ +S + D+G V +A+ + FR A D+ +W + + + Sbjct: 358 NGAGKSTLFKMISGAEQPDSGSIEVGDTVQIASVEQFRDAMNDKATVWEEISGGQDIMRI 417 Query: 172 --SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 +EI S A + Q K + L R+H +L AG Sbjct: 418 NNTEIPSRAYVGRFNFRGGDQQKIIGTLSGGERNRVHLAKLLQAG 462 >gi|289618754|emb|CBI54728.1| unnamed protein product [Sordaria macrospora] Length = 745 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 1/100 (1%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR-TSADFV 170 H I G G GK+ V+ + K++ GLKV +AA + ++ + W+ S Sbjct: 218 HNIFFTGSAGSGKSRVLKAIVKRLKSRGLKVQVAAPTGKAAFNVNGMTTWSYAGWSPGLT 277 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 I AY + + KK DVLIID + N+ Sbjct: 278 GQSIKDLVFQSAYTEAARKRIKKTDVLIIDEISMVENHHF 317 >gi|300721706|ref|YP_003710982.1| putative ABC transporter ATP-binding protein [Xenorhabdus nematophila ATCC 19061] gi|297628199|emb|CBJ88754.1| putative transport protein (ABC superfamily, atp_bind) [Xenorhabdus nematophila ATCC 19061] Length = 555 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 94/230 (40%), Gaps = 39/230 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG + K K + ++ R E +L I G Sbjct: 264 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNNVEYQKRNETSELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E LTK Y RVL D + +FS + ++ ++G Sbjct: 319 LGDKVLEVTNLTKSYG-----DRVLID----------------DLNFSLPKGAIVGIIGP 357 Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172 NG GK+T+ LS ++ D+G V LA+ D FR D +W + + + Sbjct: 358 NGAGKSTLFHMLSGQEQPDSGSITLGETVKLASVDQFRDNMDDSKTVWEEVSGGQDIMRI 417 Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 EI S A + Q K+V L GRLH + +L G G M+ Sbjct: 418 GNFEIPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLSKLLQVG-GNML 466 >gi|38154361|gb|AAR12163.1| signal recognition particle [Streptococcus agalactiae] Length = 51 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 28/41 (68%) Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 +DGTA+GG ++ I IPV F+G GE I+D+ F ++DF Sbjct: 2 IDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIGEFNSEDF 42 >gi|237807322|ref|YP_002891762.1| putative ABC transporter ATP-binding protein [Tolumonas auensis DSM 9187] gi|237499583|gb|ACQ92176.1| ABC transporter related [Tolumonas auensis DSM 9187] Length = 555 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 92/225 (40%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG + S K ++ D R E +L I G Sbjct: 264 ARRKSIEKELEWVRQNPKGRQAKS---KARLSRFEELNGQDYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E E L+K Y R L D N FS + ++ ++G Sbjct: 319 LGDKVIEVEGLSKSYG-----DRQLID----------------NLSFSIPKGAIVGIIGP 357 Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172 NG GK+T+ LS K+ D+G V+LA+ D FR + D+ ++ + + + Sbjct: 358 NGAGKSTLFRMLSGKEQPDSGTITLGETVVLASVDQFRDSMDDKKTVFDEVANGQDILKI 417 Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K+V L GRLH +L G Sbjct: 418 GNFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQTG 462 >gi|75909921|ref|YP_324217.1| cobalamin synthesis protein/P47K [Anabaena variabilis ATCC 29413] gi|75703646|gb|ABA23322.1| Cobalamin synthesis protein/P47K [Anabaena variabilis ATCC 29413] Length = 379 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 20/150 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRT----SA 167 V ++ G G GKTT++ + GLK + + F ID +L + D S Sbjct: 10 VTIITGFLGSGKTTLLNHILSNQQ--GLKTAVLVNE-FGEIGIDNELIVSTDENMVELSN 66 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +C I +D Y+ ++ + K+D L+++T G + + +G +R L RLD Sbjct: 67 GCICCTINNDLVDAVYKVLEKEE--KLDYLVVETTGLADPLPVALTFLGTELRDLTRLD- 123 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAG 257 S++ V+DA A +++F++ A Sbjct: 124 ----SIITVVDA-----ANYSLDLFNSQAA 144 >gi|239995149|ref|ZP_04715673.1| flagellar biosynthesis protein [Alteromonas macleodii ATCC 27126] Length = 469 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 21/153 (13%) Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DT+R AA +QL + ++ + A L + Q + +++IDTAG Sbjct: 296 DTYRIAAYEQLATYGKIIGCTVRKAQTSEELADLLF------QLRHKRLVLIDTAGFSQR 349 Query: 208 NSILMAGI-----GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 +S L+ I G+M V K L V A T AL+++ + +G I Sbjct: 350 DSRLIKQIKQFDNGQMPNVKKYL----------VAQANTQYPALQRIIQAYDDIELSGCI 399 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 TK+D G ++ V +++PV ++ G+ + Sbjct: 400 FTKLDECYSLGEVLSAAVEYQLPVSYVTDGQKV 432 >gi|220934509|ref|YP_002513408.1| GTP-binding signal recognition particle SRP54 G- domain protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995819|gb|ACL72421.1| GTP-binding signal recognition particle SRP54 G- domain protein [Thioalkalivibrio sp. HL-EbGR7] Length = 424 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 26/196 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 VI +VG +GVGKTT + KL+ + + L D +R A QL+ + Sbjct: 205 VIALVGPSGVGKTTTVAKLAARHVQRHGRGSIALVTTDAYRIGAYRQLQTFGQILGVPVH 264 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDP 227 ++ G + + + + +DTAG + L MAG+ + R+ Sbjct: 265 LAQTGRQLGDILLGLGDKQR------IFVDTAGMSQRDLRLAEEMAGLAAIPRL------ 312 Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPIVVTHKIP 285 L V+ A Q L E F A TG ++TK+D A G ++ + +P Sbjct: 313 ----RTLLVVAANAQQAVLE--ETFRAFGHLPLTGAVLTKVDEAASLGPVLSALSHGDLP 366 Query: 286 VYFLGVGEGI-NDLEP 300 + ++ G+ + DL+P Sbjct: 367 LLYVSEGQRVPEDLQP 382 >gi|125974290|ref|YP_001038200.1| DNA repair protein RadA [Clostridium thermocellum ATCC 27405] gi|125714515|gb|ABN53007.1| DNA repair protein RadA [Clostridium thermocellum ATCC 27405] Length = 454 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 31/134 (23%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +ILV G G+GK+T++ ++ K+ K++ +G+ +I Q+K+ ADR + Sbjct: 89 LILVGGDPGIGKSTLLLQICDKIK-TNAKILYVSGE----ESIKQIKLRADRLNVR---- 139 Query: 173 EIGSDAAALAYEAFKQAQA----KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + L+ FK QA ++ D+++ID+ + N+ + P Sbjct: 140 --NPNLLMLSETNFKVIQALSETERPDLIVIDSIQTMFNDEL----------------PS 181 Query: 229 APHSVLQVLDATTG 242 AP SV QV + T+G Sbjct: 182 APGSVSQVREITSG 195 >gi|312795908|ref|YP_004028830.1| ABC transporter ATP-binding protein [Burkholderia rhizoxinica HKI 454] gi|312167683|emb|CBW74686.1| ABC transporter ATP-binding protein [Burkholderia rhizoxinica HKI 454] Length = 643 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 52/232 (22%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG + S K I ++ R E +++ I +G Sbjct: 352 ARQKAIHKELEWVRQNPKGRQAKS---KARIARFEELNSVEYQKRNETQEIFI--PVGER 406 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGV 119 + +++E + ++K + R+L D N FS P I+ ++G Sbjct: 407 LGNEVIEFQNVSKSFG-----DRLLID----------------NLSFSVPPGAIVGIIGP 445 Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--IWADRTSADFVCSEIGS 176 NG GK+T+ ++ ++ D G + G T + A +DQ + + AD+T V EI Sbjct: 446 NGAGKSTLFRMITGREQPDCG---TVKLGPTVKLAYVDQSRDALAADKT----VFEEISG 498 Query: 177 DAAALA---YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214 A L YE +A Q K+V L GRLH L+AG Sbjct: 499 GADVLTVGRYETPSRAYIGRFNFRGADQQKQVGNLSGGERGRLHMAKTLIAG 550 >gi|308185579|ref|YP_003929710.1| ABC transport system, ATP-binding protein [Pantoea vagans C9-1] gi|308056089|gb|ADO08261.1| Putative ABC transport system, ATP-binding protein [Pantoea vagans C9-1] Length = 555 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 94/229 (41%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+RK KG S K K + D R E +L I G Sbjct: 264 ARRKSIEKELEWVRKGPKGQQS---KGKARLARFEELNNTDYQKRNETNELFIPP--GAR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E L K Y RVL D + S P + ++ ++G N Sbjct: 319 LGDKVLEVSNLRKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S ++ D+G V+ LA+ D FR + + +W + + + Sbjct: 359 GAGKSTLFRMMSGQEQPDSGSIVLGETVKLASVDQFRDSMDNSKTVWEEVSGGQDIMRIG 418 Query: 175 GSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 ++ + AY FK Q K+V L GRLH +L G G M+ Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466 >gi|59711164|ref|YP_203940.1| putative ABC transporter ATP-binding protein [Vibrio fischeri ES114] gi|197335282|ref|YP_002155315.1| ABC transporter ATP-binding protein [Vibrio fischeri MJ11] gi|59479265|gb|AAW85052.1| fused predicted transporter subunits of ABC superfamily: ATP-binding components [Vibrio fischeri ES114] gi|197316772|gb|ACH66219.1| ABC transporter ATP-binding protein [Vibrio fischeri MJ11] Length = 555 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 30/178 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG + S ++ SS D R E +L I G Sbjct: 264 ARQKTIEKELEWVRQNPKGRQAKSKARMARFEELQSS---DHQKRNETNELFIPP--GER 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E LTK + RVL D + S P + ++ ++G N Sbjct: 319 LGDKVLEVNNLTKSFG-----DRVLIDD--------LSFSMP-------KGAIVGIIGAN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 G GK+T+ LS + D+G + G+T + A++DQ + D T F G+D Sbjct: 359 GAGKSTLFKMLSGAETPDSG---TIELGETVKLASVDQFRDSMDDTKTVFQEISEGAD 413 >gi|46580990|ref|YP_011798.1| putative ABC transporter ATP-binding protein [Desulfovibrio vulgaris str. Hildenborough] gi|46450410|gb|AAS97058.1| ABC transporter, ATP-binding protein [Desulfovibrio vulgaris str. Hildenborough] gi|311234678|gb|ADP87532.1| ABC transporter related protein [Desulfovibrio vulgaris RCH1] Length = 560 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 16/115 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLK--IWADRTSADF 169 ++ +VG NG GKTT+ ++ + DAG L GDT + A +DQ + + +T + Sbjct: 356 IVGIVGPNGAGKTTLFKIIAGLEQPDAG---TLTVGDTVKLAYVDQNRESLTPGKTVYEL 412 Query: 170 VCS----------EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 + E+ + A + Q Q KKVDVL RLH +L G Sbjct: 413 ISDGYDTVKLGTREVNARAYCSRFNFMGQDQQKKVDVLSGGERNRLHVARMLKEG 467 >gi|260771119|ref|ZP_05880046.1| ABC transporter ATP-binding protein [Vibrio furnissii CIP 102972] gi|260613716|gb|EEX38908.1| ABC transporter ATP-binding protein [Vibrio furnissii CIP 102972] Length = 555 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 28/159 (17%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+RK KG + S ++ S+ D R E +L I G Sbjct: 264 ARQKTIEKELEWVRKNPKGRQAKSKARMARFEELQST---DHQKRNETNELFIPP--GER 318 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 + K++E K +K + ++ D+S MP + ++ ++G NG Sbjct: 319 LGDKVIE---VKNLSKSFDGRLLIDDLS-----FNMP-----------KGAIVGIIGANG 359 Query: 122 VGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLK 159 GK+T+ LS + D+G M GDT + A++DQ + Sbjct: 360 AGKSTLFKMLSGVEQPDSGTIEM---GDTVKLASVDQFR 395 >gi|256003492|ref|ZP_05428482.1| DNA repair protein RadA [Clostridium thermocellum DSM 2360] gi|255992516|gb|EEU02608.1| DNA repair protein RadA [Clostridium thermocellum DSM 2360] gi|316941439|gb|ADU75473.1| DNA repair protein RadA [Clostridium thermocellum DSM 1313] Length = 454 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 31/134 (23%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +ILV G G+GK+T++ ++ K+ K++ +G+ +I Q+K+ ADR + Sbjct: 89 LILVGGDPGIGKSTLLLQICDKIK-TNAKILYVSGE----ESIKQIKLRADRLNVR---- 139 Query: 173 EIGSDAAALAYEAFKQAQA----KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 + L+ FK QA ++ D+++ID+ + N+ + P Sbjct: 140 --NPNLLMLSETNFKVIQALSETERPDLIVIDSIQTMFNDEL----------------PS 181 Query: 229 APHSVLQVLDATTG 242 AP SV QV + T+G Sbjct: 182 APGSVSQVREITSG 195 >gi|254508956|ref|ZP_05121063.1| ABC transporter, ATP-binding protein [Vibrio parahaemolyticus 16] gi|219548131|gb|EED25149.1| ABC transporter, ATP-binding protein [Vibrio parahaemolyticus 16] Length = 555 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 30/160 (18%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG S S ++ S R R E +L I G Sbjct: 264 ARQKTIEKELEWVRQNPKGRQSKSKARMARFEELQSGDRQK---RNETNELFIPP--GER 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E LTK + RVL D + S P + ++ ++G N Sbjct: 319 LGDKVIEVNNLTKSFDG-----RVLIDD--------LSFSIP-------KGAIVGIIGAN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK 159 G GK+T+ LS + DAG M GDT + A++DQ + Sbjct: 359 GAGKSTLFKMLSGTEQPDAGTIEM---GDTVKLASVDQFR 395 >gi|254422347|ref|ZP_05036065.1| CobW/P47K family protein [Synechococcus sp. PCC 7335] gi|196189836|gb|EDX84800.1| CobW/P47K family protein [Synechococcus sp. PCC 7335] Length = 399 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 17/162 (10%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ---LKIWADRT---S 166 V ++ G G GKTT++ + GLK + + F ID +K D S Sbjct: 21 VTIITGFLGSGKTTLLNHILTNQE--GLKTAVLVNE-FGEVGIDNDLLIKTSDDNMVELS 77 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 +C I +D Y+ +++ K+D L+++T G + + +G +R L RLD Sbjct: 78 NGCICCTINNDLLEAVYKVLERSD--KIDYLVVETTGLADPLPVALTFLGTELRDLTRLD 135 Query: 227 PHAPHSVLQVLDATTGQ-NALRQVEMFHAVAGTTGLIMTKMD 267 S++ V+DA + ++ +A +++ KMD Sbjct: 136 -----SIVTVVDAENYSLDLFNSQAAYNQIAYGDIILLNKMD 172 >gi|224532285|ref|ZP_03672917.1| ATP-dependent Clp protease, subunit C [Borrelia valaisiana VS116] gi|224511750|gb|EEF82156.1| ATP-dependent Clp protease, subunit C [Borrelia valaisiana VS116] Length = 739 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 18/128 (14%) Query: 46 REEL-EDLLIRSD---------IGVAVAQKIVEELLTKRYAKDVSVQRVL---YDVSELI 92 +EEL +D +I SD + + A I EE+L + ++ Q+V+ + VSE I Sbjct: 398 KEELTKDNIITSDDIQKAINEILSIKTANNIKEEILELKEVENKINQKVIGQKHAVSEFI 457 Query: 93 HKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTF 150 K ++ + N DF +P IL++G NG GKTT+ +LSKK + D + L D Sbjct: 458 -KEIIKVKLGLNDDF--KPLTSILLIGSNGCGKTTLTDELSKKIIKDQNSILKLDMSDYR 514 Query: 151 RSAAIDQL 158 +I +L Sbjct: 515 EENSISKL 522 >gi|294140273|ref|YP_003556251.1| adenylylsulfate kinase [Shewanella violacea DSS12] gi|293326742|dbj|BAJ01473.1| adenylylsulfate kinase [Shewanella violacea DSS12] Length = 215 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 24/43 (55%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 HRP V+ G++G GK+T+ + K + D G K L GD R Sbjct: 36 HRPAVLWFTGLSGSGKSTLANAVDKMLHDIGCKTYLLDGDNVR 78 >gi|325965510|ref|YP_004243414.1| plasmid segregation oscillating ATPase ParF [Arthrobacter phenanthrenivorans Sphe3] gi|323471597|gb|ADX75280.1| plasmid segregation oscillating ATPase ParF [Arthrobacter phenanthrenivorans Sphe3] Length = 210 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 19/100 (19%) Query: 113 VILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA-DRTSAD- 168 +I+VVG GVGK+TV+ L+ +++ G+++ + GD RS A WA DR A Sbjct: 1 MIIVVGSEKGGVGKSTVVTNLAVELAKRGMRIAVVDGDRQRSTA-----RWAGDREEAGH 55 Query: 169 ----FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 FV ++GS +E ++ DV+++D AG+ Sbjct: 56 EPRIFVVEKLGS-----LHETLRELDT-SYDVVLVDVAGK 89 >gi|207721794|ref|YP_002252232.1| atp-binding protein [Ralstonia solanacearum MolK2] gi|207744470|ref|YP_002260862.1| atp-binding protein [Ralstonia solanacearum IPO1609] gi|206586958|emb|CAQ17542.1| atp-binding protein [Ralstonia solanacearum MolK2] gi|206595876|emb|CAQ62803.1| atp-binding protein [Ralstonia solanacearum IPO1609] Length = 548 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 96/228 (42%), Gaps = 44/228 (19%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG + S K + D ++S+ R E +++ I +G Sbjct: 257 ARQKALKKELEWVRQNPKGRQAKS-KARLARFDELNSQEYQK--RNETQEIFI--PVGER 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGV 119 + +++E ++K Y R+L D N +F+ I+ ++G Sbjct: 312 LGNEVIEFTNVSKGYG-----DRLLID----------------NLNFTIPAGAIVGIIGP 350 Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 NG GK+T+ L+ K+ DAG M G T + A +DQ + D + F GSD Sbjct: 351 NGAGKSTLFRMLTGKEQPDAGTIKM---GPTVKLAYVDQSRDALDGSKTVFEEISGGSDI 407 Query: 179 AALA-YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214 + YE +A Q K V L GRLH L+AG Sbjct: 408 LTVGRYETPSRAYIGRFNFKGGDQQKHVGTLSGGERGRLHLAKTLIAG 455 >gi|304396485|ref|ZP_07378366.1| ABC transporter related protein [Pantoea sp. aB] gi|304355994|gb|EFM20360.1| ABC transporter related protein [Pantoea sp. aB] Length = 555 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 94/229 (41%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+RK KG S K K + D R E +L I G Sbjct: 264 ARRKSIEKELEWVRKGPKGQQS---KGKARLARFEELNNTDYQKRNETNELFIPP--GAR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E L K Y RVL D + S P + ++ ++G N Sbjct: 319 LGDKVLEVSNLRKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S ++ D+G V+ LA+ D FR + + +W + + + Sbjct: 359 GAGKSTLFRMMSGQEQPDSGSIVLGETVKLASVDQFRDSMDNSKTVWEEVSGGQDIMRIG 418 Query: 175 GSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 ++ + AY FK Q K+V L GRLH +L G G M+ Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466 >gi|242238015|ref|YP_002986196.1| ABC transporter ATP-binding protein [Dickeya dadantii Ech703] gi|242130072|gb|ACS84374.1| ABC transporter related [Dickeya dadantii Ech703] Length = 572 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 52/229 (22%), Positives = 92/229 (40%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG + K K + ++ R E +L I G Sbjct: 282 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFDELNNVEYQKRNETSELFIPP--GPR 336 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E LTK Y V + + +++ + ++ ++G N Sbjct: 337 LGDKVLEVAALTKSYGDRVLIDNLSFNIP--------------------KGAIVGIIGPN 376 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ DAG V LA+ D FR + + +W + + + Sbjct: 377 GAGKSTLFRLLSGQEQPDAGTMTLGDTVQLASVDQFRDSMDNNKTVWEEVSGGQDIMRIG 436 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 EI S A + Q K++ L GR+H +L G G M+ Sbjct: 437 NFEIPSRAYVGRFNFKGVDQGKRIGELSGGERGRVHLAKLLQVG-GNML 484 >gi|153951878|ref|YP_001397703.1| DNA repair protein RadA [Campylobacter jejuni subsp. doylei 269.97] gi|152939324|gb|ABS44065.1| DNA repair protein RadA [Campylobacter jejuni subsp. doylei 269.97] Length = 446 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 56/106 (52%), Gaps = 14/106 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168 ++L+ G GVGK+T++ K++ ++ KV+ +G+ ++ Q+K+ ADR A+ Sbjct: 91 LVLIGGSPGVGKSTLLLKIASNLAKQDKKVLYVSGEESKA----QIKLRADRLEANTPNL 146 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 F+ +E+ + ++ K +LI+D+ L++N I A Sbjct: 147 FLLTELCLE------NILEELHKKDYSILIVDSIQTLYSNKITSAA 186 >gi|291551082|emb|CBL27344.1| ATPase components of ABC transporters with duplicated ATPase domains [Ruminococcus torques L2-14] Length = 518 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 ++L++ +L+ PLSKP N+ R I +VG NG+GKTT++ Sbjct: 323 KMLFETKDLVTGYDEPLSKPLNFSME-RGQKIALVGTNGIGKTTLL 367 >gi|312884665|ref|ZP_07744366.1| adenylylsulfate kinase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367578|gb|EFP95129.1| adenylylsulfate kinase [Vibrio caribbenthicus ATCC BAA-2122] Length = 205 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 25/43 (58%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 +P V+ G++G GK+T+ G L ++++AG L GD R Sbjct: 30 QKPAVLWFTGLSGAGKSTIAGALETRLANAGFHTYLLDGDNVR 72 >gi|17228588|ref|NP_485136.1| hypothetical protein alr1093 [Nostoc sp. PCC 7120] gi|17130439|dbj|BAB73050.1| alr1093 [Nostoc sp. PCC 7120] Length = 374 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 21/163 (12%) Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QL 158 S+P + P V ++ G G GKTT++ + GLK + + F ID +L Sbjct: 9 SQPMDAPKQGMP-VTIITGFLGSGKTTLLNHILSNQQ--GLKTAVLVNE-FGEIGIDNEL 64 Query: 159 KIWADRT----SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 + D S +C I +D Y+ ++ + K+D L+++T G + + Sbjct: 65 IVSTDENMVELSNGCICCTINNDLVDAVYKVLEREE--KLDYLVVETTGLADPLPVALTF 122 Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257 +G +R L RLD S++ V+DA A +++F++ A Sbjct: 123 LGTELRDLTRLD-----SIITVVDA-----ANYSLDLFNSQAA 155 >gi|261250354|ref|ZP_05942930.1| ABC transporter ATP-binding protein [Vibrio orientalis CIP 102891] gi|260939470|gb|EEX95456.1| ABC transporter ATP-binding protein [Vibrio orientalis CIP 102891] Length = 555 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 30/178 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG + S ++ S D R E +L I G Sbjct: 264 ARQKTIEKELEWVRQNPKGRQAKSKARMARFEELQSG---DHQKRNETNELFIPP--GER 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E LTK + RVL D + S P + ++ ++G N Sbjct: 319 LGDKVIEVNNLTKSFDG-----RVLIDD--------LSFSMP-------KGAIVGIIGAN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 G GK+T+ LS + DAG M GDT + A++DQ + D + F G+D Sbjct: 359 GAGKSTLFKMLSGTEQPDAGTIEM---GDTVKLASVDQFRDSMDDSKTVFQEISEGAD 413 >gi|56750595|ref|YP_171296.1| hypothetical protein syc0586_c [Synechococcus elongatus PCC 6301] gi|81299765|ref|YP_399973.1| hypothetical protein Synpcc7942_0956 [Synechococcus elongatus PCC 7942] gi|56685554|dbj|BAD78776.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81168646|gb|ABB56986.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942] Length = 380 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 24/157 (15%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-- 170 V ++ G G GKTT++ + V++ + F ID I + TS D V Sbjct: 21 VTIITGFLGSGKTTLLNHILTNQQGVKTAVLV---NEFGEIGIDNELIVS--TSEDMVEL 75 Query: 171 -----CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 C I SD Y ++ + K+D L+++T G + + +G +R L RL Sbjct: 76 SNGCICCTINSDLMDAVYRVLERPE--KIDYLVVETTGLADPLPVALTFLGSELRDLTRL 133 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 D S++ V+DA +++F++ A L+ Sbjct: 134 D-----SIVTVVDAEN-----YSLDLFNSQAAYNQLL 160 >gi|289613812|emb|CBI59347.1| unnamed protein product [Sordaria macrospora] Length = 344 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKI 160 RP VI + GV GVGKTT++ L++ + + GL ++ + D F DQLK+ Sbjct: 57 RPFVIGLNGVQGVGKTTLVKALAETLQEREGLNTLVVSIDDFYLTHEDQLKL 108 >gi|313901499|ref|ZP_07834949.1| GTP-binding signal recognition particle SRP54 G- domain [Thermaerobacter subterraneus DSM 13965] gi|313468237|gb|EFR63701.1| GTP-binding signal recognition particle SRP54 G- domain [Thermaerobacter subterraneus DSM 13965] Length = 460 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Query: 102 PFNWDFSHRP--HVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQL 158 P + + RP V+ V+G G GKTT + KL+ + + D G V L A DT+R A L Sbjct: 179 PLRFPPAGRPLAGVVAVLGPTGAGKTTTVAKLAARAVLDEGRDVALLAADTYRLGATRSL 238 Query: 159 KIWAD 163 +A+ Sbjct: 239 AAYAE 243 >gi|225375913|ref|ZP_03753134.1| hypothetical protein ROSEINA2194_01549 [Roseburia inulinivorans DSM 16841] gi|225212234|gb|EEG94588.1| hypothetical protein ROSEINA2194_01549 [Roseburia inulinivorans DSM 16841] Length = 220 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 R +++ +L+ PLSKP N R H I +VG NG+GKTT++ Sbjct: 25 RYIFETKDLVIGYDEPLSKPLNISM-ERGHKIALVGANGIGKTTLL 69 >gi|242241814|ref|ZP_04796259.1| ABC superfamily ATP binding cassette transporter, ABC protein [Staphylococcus epidermidis W23144] gi|242234732|gb|EES37043.1| ABC superfamily ATP binding cassette transporter, ABC protein [Staphylococcus epidermidis W23144] Length = 644 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P+++P N + H I ++G NGVGKTT+I +++K G +++ A Q Sbjct: 343 PITRPINLEVFKGDH-IAIIGPNGVGKTTLIKTIAEKHPKLGGQIIFGANLQIGYYDQKQ 401 Query: 158 LKIWADRTSADFVCSE 173 + +++T D+V + Sbjct: 402 AEFKSNKTILDYVWDQ 417 >gi|187777834|ref|ZP_02994307.1| hypothetical protein CLOSPO_01426 [Clostridium sporogenes ATCC 15579] gi|187774762|gb|EDU38564.1| hypothetical protein CLOSPO_01426 [Clostridium sporogenes ATCC 15579] Length = 509 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + ++++ S LI PLSKP N R I + G NG+GKTT+I L Sbjct: 313 ENIIFNASNLIIGYNTPLSKPLNLKMK-RGQKIAITGANGIGKTTLIKTL 361 >gi|114562210|ref|YP_749723.1| putative ABC transporter ATP-binding protein [Shewanella frigidimarina NCIMB 400] gi|114333503|gb|ABI70885.1| ABC transporter related [Shewanella frigidimarina NCIMB 400] Length = 555 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG S K K + D R E +L I G Sbjct: 264 ARQKTIAKELEWVRQGAKGRQS---KGKARMARFEELNTNDYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E LTK Y V + + + V + ++ ++G N Sbjct: 319 LGDKVIEVTNLTKSYGDRVLIDDLTFTVP--------------------KGAIVGIIGAN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVC--- 171 G GK+T+ +S ++ D+G V +A+ D FR + D+ +W + + + Sbjct: 359 GAGKSTLFKMISGEEQPDSGSISVGDSVQIASVDQFRDSMNDKNTVWQEISGGQDIMRIN 418 Query: 172 -SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 +EI S A + Q K + L R+H +L AG Sbjct: 419 NTEISSRAYVGRFNFRGGDQQKIIGSLSGGERNRVHLAKLLQAG 462 >gi|13541683|ref|NP_111371.1| 2-phosphoglycerate kinase [Thermoplasma volcanium GSS1] Length = 203 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 31/154 (20%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +IL+ GV GVGKT++ G L++++ G+ +ML +GD R +F+ Sbjct: 5 IILIGGVPGVGKTSISGFLAREL---GIDIML-SGDYLR----------------EFLRP 44 Query: 173 EIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 G + Y+A+ QA +K D I+ G + I+MAGI R+L R + Sbjct: 45 LFGDNPLIQKSVYDAW-QAYGQKTDENIV--KGYIDQAKIMMAGID---RILIRAIENGE 98 Query: 231 HSVLQV---LDATTGQNALRQVEMFHAVAGTTGL 261 + +L+ L + A V MF+ G L Sbjct: 99 NLILETLYFLPEMLSEKARNNVHMFYLYIGDEKL 132 >gi|150015567|ref|YP_001307821.1| ABC transporter [Clostridium beijerinckii NCIMB 8052] gi|149902032|gb|ABR32865.1| ABC transporter related [Clostridium beijerinckii NCIMB 8052] Length = 518 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+++ +L+ PL+KP N F R I++VG NG+GK+T++ L Sbjct: 323 KVIFETKDLVIGYTSPLTKPLNM-FMERGQKIVLVGANGLGKSTLLKSL 370 >gi|315179276|gb|ADT86190.1| hypothetical ABC transporter ATP-binding protein [Vibrio furnissii NCTC 11218] Length = 443 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 28/159 (17%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+RK KG + S ++ S+ D R E +L I G Sbjct: 264 ARQKTIEKELEWVRKNPKGRQAKSKARMARFEELQST---DHQKRNETNELFIPP--GER 318 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 + K++E K +K + ++ D+S MP + ++ ++G NG Sbjct: 319 LGDKVIE---VKNLSKSFDGRLLIDDLS-----FNMP-----------KGAIVGIIGANG 359 Query: 122 VGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLK 159 GK+T+ LS + D+G M GDT + A++DQ + Sbjct: 360 AGKSTLFKMLSGVEQPDSGTIEM---GDTVKLASVDQFR 395 >gi|296101171|ref|YP_003611317.1| hypothetical protein ECL_00804 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055630|gb|ADF60368.1| conserved hypothetical protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 555 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 92/225 (40%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ TKG S K K + + R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGTKGRQS---KGKARLARFEELNNTEYQKRNETNELFIPP--GAR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K+VE L K Y RVL D + S P + ++ ++G N Sbjct: 319 LGDKVVEVSNLRKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S ++ D+G V LA+ D FR A + +W + S I Sbjct: 359 GAGKSTLFRMMSGQEQPDSGSITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMRI 417 Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 G ++ + AY FK Q K+V L GRLH +L G Sbjct: 418 GNTEMPSRAYVGRFNFKGTDQGKRVGELSGGERGRLHLAKLLQVG 462 >gi|14325083|dbj|BAB60008.1| 2-phosphoglycerate kinase [Thermoplasma volcanium GSS1] Length = 208 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 31/154 (20%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +IL+ GV GVGKT++ G L++++ G+ +ML +GD R +F+ Sbjct: 10 IILIGGVPGVGKTSISGFLAREL---GIDIML-SGDYLR----------------EFLRP 49 Query: 173 EIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 G + Y+A+ QA +K D I+ G + I+MAGI R+L R + Sbjct: 50 LFGDNPLIQKSVYDAW-QAYGQKTDENIV--KGYIDQAKIMMAGID---RILIRAIENGE 103 Query: 231 HSVLQV---LDATTGQNALRQVEMFHAVAGTTGL 261 + +L+ L + A V MF+ G L Sbjct: 104 NLILETLYFLPEMLSEKARNNVHMFYLYIGDEKL 137 >gi|327396422|dbj|BAK13844.1| ABC transporter ATP-binding protein YjjK [Pantoea ananatis AJ13355] Length = 548 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 94/229 (41%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+RK KG S K K + D R E +L I G Sbjct: 257 ARRKSIEKELEWVRKGPKGQQS---KGKARLARFEELNNTDYQKRNETNELFIPP--GAR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E L K Y RVL D + S P + ++ ++G N Sbjct: 312 LGDKVLEVSNLRKSYG-----DRVLIDG--------LSFSVP-------KGAIVGIIGPN 351 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S ++ D+G V+ LA+ D FR + + +W + + + Sbjct: 352 GAGKSTLFRMMSGQEQPDSGEIVLGETVKLASVDQFRDSMDNAKTVWEEVSGGQDIMRIG 411 Query: 175 GSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 ++ + AY FK Q K+V L GRLH +L G G M+ Sbjct: 412 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 459 >gi|317485256|ref|ZP_07944137.1| ABC transporter [Bilophila wadsworthia 3_1_6] gi|316923547|gb|EFV44752.1| ABC transporter [Bilophila wadsworthia 3_1_6] Length = 560 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 16/115 (13%) Query: 113 VILVVGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAAIDQLK--IWADRTSADF 169 ++ ++G NG GKTT+ L ++ DAG L GDT + A +DQ + + +T + Sbjct: 356 IVGIIGPNGAGKTTLFKMLVGQEKPDAG---TLTIGDTVQFAYVDQQRESLTPGKTVYEL 412 Query: 170 VCS----------EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 + EI + A + Q KKVDVL R+H +L +G Sbjct: 413 ISDGAETIKLGNREINARAYCSRFNFTGSDQQKKVDVLSGGERNRVHTARMLKSG 467 >gi|168183402|ref|ZP_02618066.1| ABC transporter, ATP-binding protein [Clostridium botulinum Bf] gi|182673469|gb|EDT85430.1| ABC transporter, ATP-binding protein [Clostridium botulinum Bf] Length = 517 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + ++++ S LI PLSKP N R I + G NG+GKTT+I L Sbjct: 321 ENIIFNASNLIIGYNTPLSKPLNLKMK-RGQKIAITGANGIGKTTLIKTL 369 >gi|332305674|ref|YP_004433525.1| flagellar biosynthetic protein FlhF [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173003|gb|AEE22257.1| flagellar biosynthetic protein FlhF [Glaciecola agarilytica 4H-3-7+YE-5] Length = 442 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 11/148 (7%) Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 D++R AA +Q+ +A ++ + + L + Q + +++IDTAG Sbjct: 266 DSYRIAAYEQISTYARIIGCSVKKAQNAEELSDLLF------QFRNKRLILIDTAGFGQR 319 Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 + L+ K + LK+ +S L V+ A + ++Q + G I TK+D Sbjct: 320 DVRLI----KQLETLKQSTTANINSYL-VMQANSQYQVMQQTIAAYKQISLQGCIFTKID 374 Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGI 295 G I + HK+PV F+ G+ + Sbjct: 375 ECYSLGEAISAAIEHKLPVSFITDGQKV 402 >gi|182417095|ref|ZP_02948473.1| ATPase component of ABC transporter [Clostridium butyricum 5521] gi|237667863|ref|ZP_04527847.1| drug resistance ABC transporter, RA1 family, ATP-binding protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379104|gb|EDT76608.1| ATPase component of ABC transporter [Clostridium butyricum 5521] gi|237656211|gb|EEP53767.1| drug resistance ABC transporter, RA1 family, ATP-binding protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 518 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%) Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 +V+++ +L+ PL+KP N + R I +VG NG+GK+T++ L K+ +V Sbjct: 323 KVIFETKDLVIGYDSPLTKPLNL-YMERGQKIALVGANGLGKSTLLKSLLGKIKPLSGEV 381 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 L GD +Q DRT C E Sbjct: 382 HL--GDYQYIGYFEQ----EDRTDNKNTCIE 406 >gi|153855387|ref|ZP_01996536.1| hypothetical protein DORLON_02550 [Dorea longicatena DSM 13814] gi|149752207|gb|EDM62138.1| hypothetical protein DORLON_02550 [Dorea longicatena DSM 13814] Length = 518 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 ++L++ +L+ PLSKP N+ R I +VG NG+GKTT++ Sbjct: 323 KMLFETHDLVTGYDEPLSKPLNFSME-RGQKIALVGTNGIGKTTLL 367 >gi|291616183|ref|YP_003518925.1| YjjK [Pantoea ananatis LMG 20103] gi|291151213|gb|ADD75797.1| YjjK [Pantoea ananatis LMG 20103] Length = 555 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 94/229 (41%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+RK KG S K K + D R E +L I G Sbjct: 264 ARRKSIEKELEWVRKGPKGQQS---KGKARLARFEELNNTDYQKRNETNELFIPP--GAR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E L K Y RVL D + S P + ++ ++G N Sbjct: 319 LGDKVLEVSNLRKSYG-----DRVLIDG--------LSFSVP-------KGAIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S ++ D+G V+ LA+ D FR + + +W + + + Sbjct: 359 GAGKSTLFRMMSGQEQPDSGEIVLGETVKLASVDQFRDSMDNAKTVWEEVSGGQDIMRIG 418 Query: 175 GSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 ++ + AY FK Q K+V L GRLH +L G G M+ Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466 >gi|126658690|ref|ZP_01729835.1| Cobalamin synthesis protein/P47K [Cyanothece sp. CCY0110] gi|126619952|gb|EAZ90676.1| Cobalamin synthesis protein/P47K [Cyanothece sp. CCY0110] Length = 319 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 20/163 (12%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKI-WAD---RTSA 167 V +++G G GKTT++ ++ + D + V++ + F ID QL + + D S Sbjct: 11 VTIIIGFLGSGKTTLLNQILQNDLDQKVAVLV---NEFGDINIDGQLLVSYEDDMVELSN 67 Query: 168 DFVCSEIGSDAAALAYEAFKQ--AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 +C I EA K+ A+ +KVD LII+T G I++ IG R RL Sbjct: 68 GCICCTINDGLV----EAVKRILARKEKVDRLIIETTGVADPLPIILTFIGSDFRYFTRL 123 Query: 226 DPHAPHSVLQVLDATTGQNALRQVEM-FHAVAGTTGLIMTKMD 267 D +V+ ++DA T E+ F +A L++ K D Sbjct: 124 D-----AVITLIDAETFTPEHFDSEVAFKQIAYGDILLLNKTD 161 >gi|300715207|ref|YP_003740010.1| ATP-binding component of a transport system [Erwinia billingiae Eb661] gi|299061043|emb|CAX58150.1| ATP-binding component of a transport system [Erwinia billingiae Eb661] Length = 555 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 43/232 (18%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + D R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTDYQKRNETNELFIPP--GAR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K+VE L K Y R+L D + S P + ++ ++G N Sbjct: 319 LGDKVVEVANLRKSYG-----DRLLIDD--------LSFSVP-------KGAIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFVC 171 G GK+T+ +S ++ +D+G V+ GDT + A++DQ + +W + + + Sbjct: 359 GAGKSTLFRMMSGQEEADSGSIVL---GDTVKLASVDQFRDSMDNSKTVWEEVSGGQDIM 415 Query: 172 SEIGSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 ++ + AY FK Q K+V L GRLH +L G G M+ Sbjct: 416 RVGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466 >gi|45357834|ref|NP_987391.1| putative ATP binding nickel incorporation protein [Methanococcus maripaludis S2] gi|45047394|emb|CAF29827.1| ATP binding putative nickel incorporation protein [Methanococcus maripaludis S2] Length = 232 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 27/163 (16%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQLKIWADRTSADF 169 +I+V G G GKT+V+ K++ + G K + D + +LKI + Sbjct: 1 MIIVAGTPGAGKTSVMTHTIKQLLNKGNKPAVVKIDCLYTDDDTRYGKLKIPTLVGLSKD 60 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229 +C + A E + A+ + VD LII+TAG H R P+ Sbjct: 61 MCPD--HFAIYNLEEMAEWAEKEGVDTLIIETAGLCH-----------------RCAPYT 101 Query: 230 PHSV-LQVLDATTGQNALRQVEMF----HAVAGTTGLIMTKMD 267 +S+ + V+DAT+G N R+V F VA T G I+++ + Sbjct: 102 KNSLGICVIDATSGPNTPRKVGPFLTSADVVAITKGDIISQAE 144 >gi|261211115|ref|ZP_05925404.1| adenylylsulfate kinase [Vibrio sp. RC341] gi|260839616|gb|EEX66227.1| adenylylsulfate kinase [Vibrio sp. RC341] Length = 208 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 24/44 (54%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 RP V+ G++G GK+TV G L ++++ G L GD R Sbjct: 29 QQRPAVLWFTGLSGAGKSTVAGALENRLAELGYHTYLLDGDNVR 72 >gi|126658708|ref|ZP_01729853.1| Cobalamin synthesis protein/P47K [Cyanothece sp. CCY0110] gi|126619970|gb|EAZ90694.1| Cobalamin synthesis protein/P47K [Cyanothece sp. CCY0110] Length = 327 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 15/132 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ-LKIWADRTSADF-- 169 V ++ G G GKTT++ ++ + + V++ + F ID+ L I D D Sbjct: 3 VTIITGFLGSGKTTLLNQILQNKDKLKIAVLV---NEFGDINIDEKLLISVDSDMIDLGN 59 Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +C I Y+ ++ + KVD L+++T G I++ + ++ L RLD Sbjct: 60 GCICCTINDGFVNTVYQVLEREE--KVDYLVVETTGLADPLPIILTFLSTELKFLTRLD- 116 Query: 228 HAPHSVLQVLDA 239 S++ V+DA Sbjct: 117 ----SIITVVDA 124 >gi|119491202|ref|ZP_01623299.1| hypothetical protein L8106_25340 [Lyngbya sp. PCC 8106] gi|119453543|gb|EAW34704.1| hypothetical protein L8106_25340 [Lyngbya sp. PCC 8106] Length = 343 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 15/132 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADR----TSA 167 V ++ G G GKTT++ ++ D + V++ + F ID QL I + S Sbjct: 18 VTIITGFLGSGKTTLLNEILANKQDLKVAVLV---NEFGDINIDAQLLISTEEDMLELSN 74 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +C I Y ++ + +VD ++I+T G I++ +G +R L RLD Sbjct: 75 GCICCTINEGLVDAVYRVLEREE--QVDYMVIETTGVADPLPIILTFLGTELRELTRLD- 131 Query: 228 HAPHSVLQVLDA 239 S++ ++DA Sbjct: 132 ----SIITLVDA 139 >gi|114569231|ref|YP_755911.1| GTP-binding signal recognition particle [Maricaulis maris MCS10] gi|114339693|gb|ABI64973.1| GTP-binding signal recognition particle SRP54, G- domain [Maricaulis maris MCS10] Length = 330 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 16/134 (11%) Query: 41 LDDGVREELE-DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99 ++ G+RE+ E D +IR+ +G A + L R A D+S + + ++ I Sbjct: 70 IERGLREDNELDRVIRA-LGFHRAPGSAAQALI-RSAHDLSDGQAVARLAHAIES----- 122 Query: 100 SKPFNWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155 + F P H +L G GVGKT+ + K + + AG L + D R+ A Sbjct: 123 ----RYTFQPLPAVPEHAVLFAGTPGVGKTSALAKTAARAITAGAVPTLISCDGERAGAS 178 Query: 156 DQLKIWADRTSADF 169 D+L+ A R A F Sbjct: 179 DRLQELARRMGAGF 192 >gi|222824208|ref|YP_002575782.1| DNA repair protein RadA [Campylobacter lari RM2100] gi|222539430|gb|ACM64531.1| DNA repair protein RadA [Campylobacter lari RM2100] Length = 446 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/101 (25%), Positives = 55/101 (54%), Gaps = 14/101 (13%) Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD----FVCSE 173 G GVGK+T++ K++ ++ +G KV+ +G+ ++ Q+K+ A+R A+ F+ +E Sbjct: 96 GSPGVGKSTLLLKIASNLAKSGKKVLYVSGEESKA----QIKLRANRLDANDENLFLLTE 151 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 + + + + K ++LIID+ +++N I A Sbjct: 152 LCLE------DILNELSKKDYEILIIDSIQTIYSNKITSAA 186 >gi|330862601|emb|CBX72754.1| hypothetical protein YEW_HW34940 [Yersinia enterocolitica W22703] Length = 42 Score = 38.1 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 15/23 (65%), Positives = 18/23 (78%) Query: 284 IPVYFLGVGEGINDLEPFVAKDF 306 IP+ ++GVGEGI DL PF A DF Sbjct: 11 IPIRYIGVGEGIEDLRPFKADDF 33 >gi|322805038|emb|CBZ02598.1| ABC transporter ATP-binding protein [Clostridium botulinum H04402 065] Length = 517 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + ++++ S LI PLSKP N R I + G NG+GKTT+I L Sbjct: 321 ENIIFNASNLIIGYNKPLSKPLNLKMK-RGQKIAITGANGIGKTTLIKTL 369 >gi|315221856|ref|ZP_07863768.1| ABC transporter, ATP-binding protein [Streptococcus anginosus F0211] gi|315189089|gb|EFU22792.1| ABC transporter, ATP-binding protein [Streptococcus anginosus F0211] Length = 513 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 R ++ EL PL+KP N F R + ++G NG+GKTT++ L Sbjct: 322 RFIFQAEELQIGYDCPLTKPLNLTFE-RNQKVAIIGANGIGKTTLLKSL 369 >gi|312198201|ref|YP_004018262.1| sulfate adenylyltransferase large subunit [Frankia sp. EuI1c] gi|311229537|gb|ADP82392.1| sulfate adenylyltransferase, large subunit [Frankia sp. EuI1c] Length = 642 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 23/43 (53%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 RP VI G++G GK+T+ + KK+ D G L GD R Sbjct: 461 QRPAVIWFTGLSGAGKSTIANLVEKKLHDEGFHTYLLDGDNVR 503 >gi|237794035|ref|YP_002861587.1| ABC transporter, ATP-binding protein [Clostridium botulinum Ba4 str. 657] gi|229260521|gb|ACQ51554.1| ABC transporter, ATP-binding protein [Clostridium botulinum Ba4 str. 657] Length = 517 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + ++++ S LI PLSKP N R I + G NG+GKTT+I L Sbjct: 321 ENIIFNASNLIIGYNKPLSKPLNLKMK-RGQKIAITGANGIGKTTLIKTL 369 >gi|170760247|ref|YP_001786086.1| ABC transporter, ATP-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169407236|gb|ACA55647.1| ABC transporter, ATP-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 517 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + ++++ S LI PLSKP N R I + G NG+GKTT+I L Sbjct: 321 ENIIFNASNLIIGYNKPLSKPLNLKMK-RGQKIAITGANGIGKTTLIKTL 369 >gi|148378721|ref|YP_001253262.1| ABC transporter, ATP-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153934277|ref|YP_001383106.1| ABC transporter, ATP-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153935432|ref|YP_001386656.1| ABC transporter, ATP-binding protein [Clostridium botulinum A str. Hall] gi|148288205|emb|CAL82274.1| ABC transporter, ATP-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152930321|gb|ABS35821.1| ABC transporter, ATP-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152931346|gb|ABS36845.1| ABC transporter, ATP-binding protein [Clostridium botulinum A str. Hall] Length = 517 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + ++++ S LI PLSKP N R I + G NG+GKTT+I L Sbjct: 321 ENIIFNASNLIIGYNKPLSKPLNLKMK-RGQKIAITGANGIGKTTLIKTL 369 >gi|168178113|ref|ZP_02612777.1| ABC transporter, ATP-binding protein [Clostridium botulinum NCTC 2916] gi|182670590|gb|EDT82564.1| ABC transporter, ATP-binding protein [Clostridium botulinum NCTC 2916] Length = 517 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + ++++ S LI PLSKP N R I + G NG+GKTT+I L Sbjct: 321 ENIIFNASNLIIGYNKPLSKPLNLKMK-RGQKIAITGANGIGKTTLIKTL 369 >gi|319400709|gb|EFV88931.1| ABC transporter family protein [Staphylococcus epidermidis FRI909] Length = 644 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P+++P N + H I ++G NGVGKTT+I +++K G +++ A Q Sbjct: 343 PITQPINLEVFKGDH-IAIIGPNGVGKTTLIKTIAEKHPKLGGQIIFGANLQIGYYDQKQ 401 Query: 158 LKIWADRTSADFVCSE 173 + +++T D+V + Sbjct: 402 AEFKSNKTILDYVWDQ 417 >gi|312199338|ref|YP_004019399.1| sulfate adenylyltransferase large subunit [Frankia sp. EuI1c] gi|311230674|gb|ADP83529.1| sulfate adenylyltransferase, large subunit [Frankia sp. EuI1c] Length = 644 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 23/43 (53%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 RP VI G++G GK+T+ + KK+ D G L GD R Sbjct: 461 QRPAVIWFTGLSGAGKSTIANLVEKKLHDEGFHTYLLDGDNVR 503 >gi|157374409|ref|YP_001473009.1| putative ABC transporter ATP-binding protein [Shewanella sediminis HAW-EB3] gi|157316783|gb|ABV35881.1| ABC transporter-related protein [Shewanella sediminis HAW-EB3] Length = 555 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 53/224 (23%), Positives = 90/224 (40%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG S ++ ++ D R E +L I G Sbjct: 264 ARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTN---DYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E + LTK Y RVL D + S P + ++ ++G N Sbjct: 319 LGDKVIEVKNLTKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGAN 358 Query: 121 GVGKTTVIGKLSKKMS------DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC--- 171 G GK+T+ +S + G V LA+ + FR + D+ +W + + + Sbjct: 359 GAGKSTLFKMISGAEQPDSGSVEVGESVQLASVEQFRDSMNDKNTVWQEISEGQDIMRIN 418 Query: 172 -SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 +EI S A + Q K + L R+H +L AG Sbjct: 419 NTEIPSRAYVGRFNFRGGDQQKIIGTLSGGERNRVHLAKLLQAG 462 >gi|153938210|ref|YP_001390081.1| ABC transporter, ATP-binding protein [Clostridium botulinum F str. Langeland] gi|152934106|gb|ABS39604.1| ABC transporter, ATP-binding protein [Clostridium botulinum F str. Langeland] gi|295318174|gb|ADF98551.1| ABC transporter, ATP-binding protein [Clostridium botulinum F str. 230613] Length = 517 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + ++++ S LI PLSKP N R I + G NG+GKTT+I L Sbjct: 321 ENIIFNASNLIIGYNKPLSKPLNLKMK-RGQKIAITGANGIGKTTLIKTL 369 >gi|58000330|ref|YP_190184.1| putative plasmid partitioning protein [Escherichia coli] gi|168758403|ref|ZP_02783410.1| ParA [Escherichia coli O157:H7 str. EC4401] gi|168770700|ref|ZP_02795707.1| ParA [Escherichia coli O157:H7 str. EC4486] gi|301646993|ref|ZP_07246829.1| partitioning protein, ParA-family protein [Escherichia coli MS 146-1] gi|57903230|gb|AAW58860.1| putative plasmid partitioning protein [Escherichia coli] gi|189354767|gb|EDU73186.1| ParA [Escherichia coli O157:H7 str. EC4401] gi|189360440|gb|EDU78859.1| ParA [Escherichia coli O157:H7 str. EC4486] gi|301074838|gb|EFK89644.1| partitioning protein, ParA-family protein [Escherichia coli MS 146-1] Length = 214 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 19/100 (19%) Query: 113 VILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 +I VVG N G GKTT+ L+ +++ G +V L GD R+AA K A+R +A + Sbjct: 1 MITVVGGNKGGSGKTTIASNLAIALANKGREVCLLNGDLQRTAA----KHHAEREAAGLL 56 Query: 171 CSEIGSDAAALAYEAFK------QAQAKKVDVLIIDTAGR 204 A E F QA +K D +I+D AGR Sbjct: 57 -------PAITLVEKFDNLTQTLQALNEKFDDVIVDVAGR 89 >gi|332290359|ref|YP_004421211.1| putative ABC transporter ATP-binding protein [Gallibacterium anatis UMN179] gi|330433255|gb|AEC18314.1| putative ABC transporter ATP-binding protein [Gallibacterium anatis UMN179] Length = 556 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 94/226 (41%), Gaps = 40/226 (17%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG + S ++ +S D R E +L I G Sbjct: 265 ARQKSIEKELEWVRQNPKGRQAKSKARMARFEELNNS---DYQKRNETNELFIPP--GPR 319 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E E L+K Y R L D N FS + ++ ++G Sbjct: 320 LGDKVIEVENLSKSYG-----DRTLID----------------NLSFSIPKGAIVGIIGA 358 Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 NG GK+T+ LS ++ D G V+L++ + FR + +W + S + Sbjct: 359 NGAGKSTLFKMLSGQEQPDKGTITLGDTVVLSSVEQFRDKMDNSKTVW-EEVSGGLDIMK 417 Query: 174 IGS-DAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 IG+ + + AY FK Q K+V L GRLH +L G Sbjct: 418 IGNFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463 >gi|291526177|emb|CBK91764.1| DNA repair protein RadA [Eubacterium rectale DSM 17629] Length = 456 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 32/136 (23%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 R ++LV G G+GK+T++ ++ +++S + ++ +G+ ++ Q+K+ ADR DF Sbjct: 90 RGSLVLVGGDPGIGKSTLLLQVCRELSQKKVPLLYVSGEE----SLHQIKMRADRL-GDF 144 Query: 170 VCSEIGSDAAALAYE-----AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 +D+ L E A Q KK +V++ID+ ++N I Sbjct: 145 ------TDSLELLCETSLDIAKDVIQRKKPEVVVIDSIQTMYNEEI-------------- 184 Query: 225 LDPHAPHSVLQVLDAT 240 AP SV QV + T Sbjct: 185 --ASAPGSVSQVRETT 198 >gi|238755498|ref|ZP_04616837.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia ruckeri ATCC 29473] gi|238706254|gb|EEP98632.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia ruckeri ATCC 29473] Length = 548 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 92/229 (40%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG + K K + ++ R E +L I G Sbjct: 257 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E E L+K Y V LI + L K ++ ++G N Sbjct: 312 LGDKVLEVEHLSKSYGDRV-----------LIDDLTFALPKG---------AIVGIIGPN 351 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G V LA+ D FR + D +W + + + Sbjct: 352 GAGKSTLFRMLSGQEQPDSGSISLGDTVQLASVDQFRDSMDDSKTVWEEVSGGQDIMKIG 411 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 E+ S A + Q K+V L GR+H +L G G M+ Sbjct: 412 NFELPSRAYVGRFNFKGVDQGKRVGELSGGERGRIHLAKLLQVG-GNML 459 >gi|163749770|ref|ZP_02157016.1| adenylylsulfate kinase [Shewanella benthica KT99] gi|161330583|gb|EDQ01541.1| adenylylsulfate kinase [Shewanella benthica KT99] Length = 234 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 24/43 (55%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 HRP V+ G++G GK+T+ + K + D G K L GD R Sbjct: 55 HRPAVLWFTGLSGSGKSTLANAVDKMLHDIGCKTYLLDGDNVR 97 >gi|120554894|ref|YP_959245.1| GTP-binding signal recognition particle [Marinobacter aquaeolei VT8] gi|120324743|gb|ABM19058.1| GTP-binding signal recognition particle SRP54, G- domain [Marinobacter aquaeolei VT8] Length = 437 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 37/201 (18%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWA-------- 162 + +VG G GKTT IGKL+ + + + L D +R AA +QL ++ Sbjct: 232 IYALVGPTGSGKTTTIGKLAARYVLEHGPDSLALVTTDRYRVAAHEQLFVFGRILNVPVR 291 Query: 163 ---DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 + S D + E+ SD +++IDTAG + + ++ Sbjct: 292 VVDESHSLDDILDEL-SDR----------------HLVLIDTAGLTSADRGYQEQLAELA 334 Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279 R + H V+ AT+ ++ V + +A G IMTK+D G + V Sbjct: 335 RSDHNIRTHL------VVSATSQPRIMKSVWHCYKMASLAGCIMTKIDEALTLGEALGFV 388 Query: 280 VTHKIPVYFLGVGEGI-NDLE 299 + +PV + G+ I DL+ Sbjct: 389 METSLPVAWYTDGQKIPEDLQ 409 >gi|291527090|emb|CBK92676.1| DNA repair protein RadA [Eubacterium rectale M104/1] Length = 456 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 32/136 (23%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 R ++LV G G+GK+T++ ++ +++S + ++ +G+ ++ Q+K+ ADR DF Sbjct: 90 RGSLVLVGGDPGIGKSTLLLQVCRELSQKKVPLLYVSGEE----SLHQIKMRADRL-GDF 144 Query: 170 VCSEIGSDAAALAYE-----AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 +D+ L E A Q KK +V++ID+ ++N I Sbjct: 145 ------TDSLELLCETSLDIAKDVIQRKKPEVVVIDSIQTMYNEEI-------------- 184 Query: 225 LDPHAPHSVLQVLDAT 240 AP SV QV + T Sbjct: 185 --ASAPGSVSQVRETT 198 >gi|170757680|ref|YP_001780362.1| ABC transporter, ATP-binding protein [Clostridium botulinum B1 str. Okra] gi|169122892|gb|ACA46728.1| ABC transporter, ATP-binding protein [Clostridium botulinum B1 str. Okra] Length = 517 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + ++++ S LI PLSKP N R I + G NG+GKTT+I L Sbjct: 321 ENIIFNASNLIIGYNKPLSKPLNLKMK-RGQKIAITGANGIGKTTLIKTL 369 >gi|127512312|ref|YP_001093509.1| flagellar biosynthesis regulator FlhF [Shewanella loihica PV-4] gi|126637607|gb|ABO23250.1| GTP-binding signal recognition particle SRP54, G- domain [Shewanella loihica PV-4] Length = 474 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 48/217 (22%), Positives = 92/217 (42%), Gaps = 27/217 (12%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V+ VG GVGKTT + KL+ + + +V L D +R A +QL + Sbjct: 260 VVAFVGPTGVGKTTSVAKLAARFAAQHGSDQVALITTDHYRIGAYEQLATYGKIMGCPVK 319 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM-IRVLKRLDPHA 229 + ++ + Y Q + +++IDT AG+G+ +R+ ++LD Sbjct: 320 QAHDLNELEQILY------QFRNRKLVLIDT-----------AGMGQRDVRLFQQLDNLT 362 Query: 230 PHSVLQ-----VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284 +S L VL +T+ + L +G I+TK+D + + +++ + Sbjct: 363 ANSRLPIRSYLVLSSTSQRRVLEDAVAQFTRIPLSGAILTKLDESVALAPALSVLIQSGL 422 Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEKI 321 P+ ++ G+ + E D A+ L E+K+ Sbjct: 423 PLSYVTDGQRVP--EDMQVADTLALANKALSVLEKKV 457 >gi|312196661|ref|YP_004016722.1| sulfate adenylyltransferase large subunit [Frankia sp. EuI1c] gi|311227997|gb|ADP80852.1| sulfate adenylyltransferase, large subunit [Frankia sp. EuI1c] Length = 642 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 23/43 (53%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 RP VI G++G GK+T+ + KK+ D G L GD R Sbjct: 461 QRPAVIWFTGLSGAGKSTIANLVEKKLHDEGFHTYLLDGDNVR 503 >gi|262401847|ref|ZP_06078412.1| adenylylsulfate kinase [Vibrio sp. RC586] gi|262351819|gb|EEZ00950.1| adenylylsulfate kinase [Vibrio sp. RC586] Length = 208 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 24/44 (54%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 RP V+ G++G GK+TV G L ++++ G L GD R Sbjct: 29 QQRPAVLWFTGLSGAGKSTVAGTLENRLAELGYHTYLLDGDNVR 72 >gi|325273561|ref|ZP_08139789.1| flagellar biosynthesis regulator FlhF [Pseudomonas sp. TJI-51] gi|324101300|gb|EGB98918.1| flagellar biosynthesis regulator FlhF [Pseudomonas sp. TJI-51] Length = 129 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 32/62 (51%) Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 VL T+ + L + G G I+TK+D TA G ++ + ++H +PV +L G I Sbjct: 25 VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISHDLPVAYLTDGPRI 84 Query: 296 ND 297 D Sbjct: 85 PD 86 >gi|270263876|ref|ZP_06192144.1| transporter [Serratia odorifera 4Rx13] gi|270042069|gb|EFA15165.1| transporter [Serratia odorifera 4Rx13] Length = 555 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 40/226 (17%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S ++ S+ R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQSKGKARLARFEELNSTEYQK---RNETNELFIPP--GAR 318 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 + K+VE VS R Y LI + + K ++ ++G NG Sbjct: 319 LGDKVVE----------VSNLRKSYGDRLLIDDLSFAVPKG---------AIVGIIGPNG 359 Query: 122 VGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFVCS 172 GK+T+ +S ++ D+G +A GDT + A++DQ + +W + + + Sbjct: 360 AGKSTLFRMMSGQEQPDSG---SIALGDTVKLASVDQFRDSMDNAKTVWEEVSGGQDIMR 416 Query: 173 EIGSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 ++ + AY FK Q K+V L GRLH +L G Sbjct: 417 VGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462 >gi|218440765|ref|YP_002379094.1| cobalamin synthesis protein P47K [Cyanothece sp. PCC 7424] gi|218173493|gb|ACK72226.1| cobalamin synthesis protein P47K [Cyanothece sp. PCC 7424] Length = 341 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 15/132 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWAD----RTSA 167 V L+ G G GKTT++ + + ++ LKV + + F ID QL + + S Sbjct: 16 VTLITGFLGSGKTTLLNHILQ--NNQNLKVAVLVNE-FGDINIDSQLLVSYENGIVELSN 72 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +C I Y +Q +VD L+I+T G I++ +G +R L RLD Sbjct: 73 GCICCTINDGLVEAVYRILEQE--DRVDYLVIETTGVADLLPIILTFVGSELRELTRLD- 129 Query: 228 HAPHSVLQVLDA 239 S+L ++D+ Sbjct: 130 ----SILTLVDS 137 >gi|226947999|ref|YP_002803090.1| ABC transporter, ATP-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226843025|gb|ACO85691.1| ABC transporter, ATP-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 517 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + ++++ S LI PLSKP N R I + G NG+GKTT+I L Sbjct: 321 ENIIFNASNLIIGYNKPLSKPLNLKMK-RGQKIAITGANGIGKTTLIKTL 369 >gi|323492589|ref|ZP_08097735.1| putative ABC transporter ATP-binding protein [Vibrio brasiliensis LMG 20546] gi|323313191|gb|EGA66309.1| putative ABC transporter ATP-binding protein [Vibrio brasiliensis LMG 20546] Length = 555 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 30/160 (18%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG S S ++ S R R E +L I G Sbjct: 264 ARQKTIEKELEWVRQNPKGRQSKSKARMARFEELQSGDRQK---RNETNELFIPP--GER 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E LTK + V + + +++ + ++ ++G N Sbjct: 319 LGDKVIEVNNLTKSFDGRVLIDDLSFNIP--------------------KGAIVGIIGAN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK 159 G GK+T+ LS + D+G M GDT + A++DQ + Sbjct: 359 GAGKSTLFKMLSGTEQPDSGTIEM---GDTVKLASVDQFR 395 >gi|238924656|ref|YP_002938172.1| DNA repair protein RadA [Eubacterium rectale ATCC 33656] gi|238876331|gb|ACR76038.1| DNA repair protein RadA [Eubacterium rectale ATCC 33656] Length = 456 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 32/136 (23%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 R ++LV G G+GK+T++ ++ +++S + ++ +G+ ++ Q+K+ ADR DF Sbjct: 90 RGSLVLVGGDPGIGKSTLLLQVCRELSQKKVPLLYVSGEE----SLHQIKMRADRL-GDF 144 Query: 170 VCSEIGSDAAALAYE-----AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224 +D+ L E A Q KK +V++ID+ ++N I Sbjct: 145 ------TDSLELLCETSLDIAKDVIQRKKPEVVVIDSIQTMYNEEI-------------- 184 Query: 225 LDPHAPHSVLQVLDAT 240 AP SV QV + T Sbjct: 185 --ASAPGSVSQVRETT 198 >gi|146342053|ref|YP_001207101.1| putative bifunctional sulfate adenylyltransferase/adenylyl-sulfate kinase CysN/CysC [Bradyrhizobium sp. ORS278] gi|146194859|emb|CAL78884.1| putative CysN/CysC bifunctional enzyme: Sulfate adenylyltransferase (SAT) subunit 1 (N-terminal); Adenylyl-sulfate kinase (APS kinase)(C-terminal) [Bradyrhizobium sp. ORS278] Length = 620 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 23/41 (56%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 P V+ G++G GK+T+ L KK+ AG ML GD R Sbjct: 450 PAVVWFTGLSGAGKSTIANCLEKKLHTAGFHTMLLDGDNIR 490 >gi|298245528|ref|ZP_06969334.1| DNA replication factor Dna2 [Ktedonobacter racemifer DSM 44963] gi|297553009|gb|EFH86874.1| DNA replication factor Dna2 [Ktedonobacter racemifer DSM 44963] Length = 1067 Score = 37.7 bits (86), Expect = 2.0, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 3/55 (5%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168 +LV G G GKT+VI ++ K+++ G +V+LAA F + A+D + + +R D Sbjct: 625 LLVHGPPGTGKTSVIAEIVKRLTQQGQRVLLAA---FTNQAVDNILLRLEREGFD 676 >gi|258622751|ref|ZP_05717769.1| adenylylsulfate kinase [Vibrio mimicus VM573] gi|258584939|gb|EEW09670.1| adenylylsulfate kinase [Vibrio mimicus VM573] Length = 220 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 24/44 (54%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 RP V+ G++G GK+TV G L ++++ G L GD R Sbjct: 41 EQRPAVLWFTGLSGAGKSTVAGALENRLAELGYHTYLLDGDNVR 84 >gi|259907350|ref|YP_002647706.1| putative ABC transporter ATP-binding protein [Erwinia pyrifoliae Ep1/96] gi|224962972|emb|CAX54453.1| Putative ATP-binding component of a transport system [Erwinia pyrifoliae Ep1/96] gi|283477172|emb|CAY73079.1| putative ABC transport system, ATP-binding component [Erwinia pyrifoliae DSM 12163] Length = 555 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 55/226 (24%), Positives = 91/226 (40%), Gaps = 40/226 (17%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + D R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTDYQKRNETNELFIPP--GAR 318 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 + K++E VS R Y LI + + K ++ ++G NG Sbjct: 319 LGDKVLE----------VSNLRKSYGDRLLIDDLTFSVPKG---------AIVGIIGPNG 359 Query: 122 VGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFVCS 172 GK+T+ +S ++ D+G V+ GDT + A++DQ + +W + + + Sbjct: 360 AGKSTLFRMMSGQEQPDSGSIVL---GDTVKLASVDQFRDTMDNSKTVWEEVSGGQDIMR 416 Query: 173 EIGSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 ++ + AY FK Q K+V L GRLH +L G Sbjct: 417 IGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462 >gi|10955419|ref|NP_053131.1| hypothetical protein pB171_069 [Escherichia coli] gi|91206306|ref|YP_538660.1| hypothetical protein UTI89_P061 [Escherichia coli UTI89] gi|116006840|ref|YP_788023.1| plasmid partitioning protein [Escherichia coli] gi|190014956|ref|YP_001965468.1| Putative partitioning protein [Escherichia coli] gi|191174405|ref|ZP_03035909.1| plasmid stability protein ParA [Escherichia coli F11] gi|194430311|ref|ZP_03062804.1| ParA [Escherichia coli B171] gi|215276273|ref|YP_002332236.1| ParA-like protein, putative partitioning protein [Escherichia coli O127:H6 str. E2348/69] gi|218511242|ref|YP_002415700.1| putative plasmid partitioning protein [Escherichia coli 55989] gi|218692930|ref|YP_002406042.1| hypothetical protein p1ECUMN_0152 [Escherichia coli UMN026] gi|256026285|ref|ZP_05440150.1| hypothetical protein E4_23141 [Escherichia sp. 4_1_40B] gi|256855304|ref|YP_003162548.1| hypothetical protein pEC14_55 [Escherichia coli] gi|293404647|ref|ZP_06648640.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|300897134|ref|ZP_07115591.1| partitioning protein, ParA-family protein [Escherichia coli MS 198-1] gi|6009445|dbj|BAA84904.1| orf69 [Escherichia coli] gi|91075757|gb|ABE10637.1| hypothetical protein UTI89_P061 [Escherichia coli UTI89] gi|109389677|gb|ABG29596.1| Putative partitioning protein [Escherichia coli] gi|115500695|dbj|BAF33926.1| plasmid partitioning protein [Escherichia coli] gi|190905338|gb|EDV64973.1| plasmid stability protein ParA [Escherichia coli F11] gi|194411641|gb|EDX27970.1| ParA [Escherichia coli B171] gi|215267869|emb|CAS07539.1| ParA-like protein, putative partitioning protein [Escherichia coli O127:H6 str. E2348/69] gi|218350093|emb|CAQ87512.1| conserved hypothetical protein [Escherichia coli UMN026] gi|218359343|emb|CAU95829.1| putative plasmid partitioning protein [Escherichia coli 55989] gi|256275516|gb|ACU68789.1| conserved hypothetical protein [Escherichia coli] gi|281181670|dbj|BAI57999.1| ParA protein [Escherichia coli SE15] gi|291428359|gb|EFF01385.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|300359076|gb|EFJ74946.1| partitioning protein, ParA-family protein [Escherichia coli MS 198-1] gi|307629857|gb|ADN74160.1| hypothetical protein UM146_24431 [Escherichia coli UM146] gi|315290867|gb|EFU50236.1| partitioning protein, ParA-family protein [Escherichia coli MS 153-1] gi|323954212|gb|EGB50000.1| hypothetical protein ERLG_04487 [Escherichia coli H263] gi|324005324|gb|EGB74543.1| partitioning protein, ParA-family protein [Escherichia coli MS 57-2] gi|324015229|gb|EGB84448.1| partitioning protein, ParA-family protein [Escherichia coli MS 60-1] gi|332084726|gb|EGI89913.1| plasmid partitioning protein [Shigella boydii 3594-74] gi|332084759|gb|EGI89944.1| plasmid partitioning protein [Shigella boydii 3594-74] Length = 214 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 19/100 (19%) Query: 113 VILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 +I VVG N G GKTT+ L+ +++ G +V L GD R+AA K A+R +A + Sbjct: 1 MITVVGGNKGGSGKTTIASNLAIALANKGREVCLLNGDLQRTAA----KHHAEREAAGLL 56 Query: 171 CSEIGSDAAALAYEAFK------QAQAKKVDVLIIDTAGR 204 A E F QA +K D +I+D AGR Sbjct: 57 -------PAITLVEKFDNLTQTLQALNEKFDDVIVDVAGR 89 >gi|323492295|ref|ZP_08097451.1| adenylylsulfate kinase [Vibrio brasiliensis LMG 20546] gi|323313459|gb|EGA66567.1| adenylylsulfate kinase [Vibrio brasiliensis LMG 20546] Length = 205 Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 27/51 (52%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 S +P V+ G++G GK+TV G L +++++G L GD R L Sbjct: 29 SQKPVVLWFTGLSGAGKSTVAGALETRLAESGYHTYLLDGDNVRHGLCSDL 79 >gi|223044463|ref|ZP_03614494.1| vga protein [Staphylococcus capitis SK14] gi|222442152|gb|EEE48266.1| vga protein [Staphylococcus capitis SK14] Length = 645 Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P+++P N + H I V+G NGVGKTT+I ++ K + G ++ A Q Sbjct: 343 PITQPINIEVFKGDH-IAVIGPNGVGKTTLIKTIADKQNKLGGEITFGANLQIGYYDQKQ 401 Query: 158 LKIWADRTSADFVCSE 173 + +++T D+V + Sbjct: 402 AEFKSNKTILDYVWDQ 417 >gi|67922236|ref|ZP_00515750.1| Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K [Crocosphaera watsonii WH 8501] gi|67855939|gb|EAM51184.1| Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K [Crocosphaera watsonii WH 8501] Length = 348 Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 22/149 (14%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169 V ++ G G GKTT++ ++ + + + V++ + F ID QL I + + Sbjct: 22 VTIITGFLGSGKTTLLNQILQNKDNLKIAVLV---NEFGDINIDEQLLISVESDMIELGN 78 Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +C I Y+ ++ + K+D L+I+T G I+M + + L RLD Sbjct: 79 GCICCTINDSFINTVYQVLEREE--KIDYLVIETTGLADPFPIIMTFLSTELNFLTRLD- 135 Query: 228 HAPHSVLQVLDAT-------TGQNALRQV 249 +++ V+DA ALRQ+ Sbjct: 136 ----AIITVVDAAGFDAKHFDSDAALRQI 160 >gi|310765153|gb|ADP10103.1| putative ABC transporter ATP-binding protein [Erwinia sp. Ejp617] Length = 555 Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust. Identities = 55/226 (24%), Positives = 91/226 (40%), Gaps = 40/226 (17%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + D R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTDYQKRNETNELFIPP--GAR 318 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 + K++E VS R Y LI + + K ++ ++G NG Sbjct: 319 LGDKVLE----------VSNLRKSYGDRLLIDDLTFSVPKG---------AIVGIIGPNG 359 Query: 122 VGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFVCS 172 GK+T+ +S ++ D+G V+ GDT + A++DQ + +W + + + Sbjct: 360 AGKSTLFRMMSGQEQPDSGSIVL---GDTVKLASVDQFRDSMDNSKTVWEEVSGGQDIMR 416 Query: 173 EIGSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 ++ + AY FK Q K+V L GRLH +L G Sbjct: 417 IGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462 >gi|262166581|ref|ZP_06034318.1| adenylylsulfate kinase [Vibrio mimicus VM223] gi|262026297|gb|EEY44965.1| adenylylsulfate kinase [Vibrio mimicus VM223] Length = 208 Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 24/44 (54%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 RP V+ G++G GK+TV G L ++++ G L GD R Sbjct: 29 EQRPAVLWFTGLSGAGKSTVAGALENRLAELGYHTYLLDGDNVR 72 >gi|114800519|ref|YP_759669.1| flagellar biosynthesis protein FlhF-like protein [Hyphomonas neptunium ATCC 15444] gi|114740693|gb|ABI78818.1| flagellar biosynthesis protein FlhF homolog [Hyphomonas neptunium ATCC 15444] Length = 315 Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 14/179 (7%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 IL+VG G G+T+ KL+++ S A ++ A D SA +QL + +R A +E Sbjct: 115 ILLVGPPGAGRTSTAAKLTRRASVARTEITPLAADLDGSAGGEQLAAYLERERAQIRVAE 174 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 DA A + + +ID +A +G ++ + R +P Sbjct: 175 T-PDALFSELRALRNESRR----CVIDLPAINPFEGDDLASLGDLVAAI-RAEP------ 222 Query: 234 LQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291 + VL A + L + FH AG I+TK+D R GG I + + I L + Sbjct: 223 VLVLSAEGHPDDLAESARAFHR-AGVRRAILTKLDVVRRRGGAIAALTSSGIAFSHLAI 280 >gi|289644823|ref|ZP_06476876.1| cell division protein FtsY [Frankia symbiont of Datisca glomerata] gi|289505379|gb|EFD26425.1| cell division protein FtsY [Frankia symbiont of Datisca glomerata] Length = 51 Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 29/47 (61%) Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 +DGTA+GG +I + +PV +G+GEG +DL PF + F + G Sbjct: 1 LDGTAKGGIVIAVQRELGVPVKLIGLGEGPDDLAPFEPEAFVDALLG 47 >gi|238761918|ref|ZP_04622892.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia kristensenii ATCC 33638] gi|238700032|gb|EEP92775.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia kristensenii ATCC 33638] Length = 548 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 95/232 (40%), Gaps = 43/232 (18%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG + K K + ++ R E +L I G Sbjct: 257 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E E L+K Y V LI + L K ++ ++G N Sbjct: 312 LGDKVLEVEHLSKSYGDRV-----------LIDDLTFALPKG---------AIVGIIGPN 351 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFVC 171 G GK+T+ LS ++ D+G ++ GDT + A++DQ + +W + + + Sbjct: 352 GAGKSTLFRMLSGQEQPDSG---TISLGDTVQLASVDQFRDNMDGSKTVWEEVSGGQDIM 408 Query: 172 S----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 EI S A + Q K+V L GR+H +L G G M+ Sbjct: 409 KIGNFEIPSRAYVGRFNFKGIDQGKRVGELSGGERGRIHLAKLLQVG-GNML 459 >gi|262170504|ref|ZP_06038182.1| adenylylsulfate kinase [Vibrio mimicus MB-451] gi|261891580|gb|EEY37566.1| adenylylsulfate kinase [Vibrio mimicus MB-451] Length = 208 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 25/51 (49%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 RP V+ G++G GK+TV G L ++++ G L GD R L Sbjct: 29 EQRPAVLWFTGLSGAGKSTVAGALENRLAELGYHTYLLDGDNVRHGLCSDL 79 >gi|317153076|ref|YP_004121124.1| GTP-binding signal recognition particle SRP54 G- domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316943327|gb|ADU62378.1| GTP-binding signal recognition particle SRP54 G- domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 356 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 58/247 (23%), Positives = 99/247 (40%), Gaps = 24/247 (9%) Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL------SKPFNWDFSHRPHVI-LV 116 Q++ E L + D ++ R+ ++ E + ++ + KPF S P VI Sbjct: 102 QRLALEYLEREDVDDRAMTRIFCELREDADRSIITVLESMVEVKPFQ--ASRWPGVIHAF 159 Query: 117 VGVNGVGKTTVIGKLS--KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G G GKT+ + +L+ +K S+ ++ LA D R LK +A+ + F Sbjct: 160 AGPGGAGKTSSLIRLALREKKSNPKARICLATADGGRGKGRLVLKHYAELSCLAFRELMT 219 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 D L EA + D+++ID G L N+ L + L L S+ Sbjct: 220 RDDFMLLRREA------DQFDMILIDLPG-LPGNTTL-----EEFTALYGLSTCENLSIH 267 Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294 VL+ Q + + +I TK+D T G L+ + +P+ L G Sbjct: 268 LVLNPYYSQTQFDRFMEKYKSEQLASVIWTKLDETCTFGALLNMAFASGLPISALSYGAD 327 Query: 295 I-NDLEP 300 + N + P Sbjct: 328 LKNSIAP 334 >gi|258625778|ref|ZP_05720657.1| adenylylsulfate kinase [Vibrio mimicus VM603] gi|258582016|gb|EEW06886.1| adenylylsulfate kinase [Vibrio mimicus VM603] Length = 220 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 24/44 (54%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 RP V+ G++G GK+TV G L ++++ G L GD R Sbjct: 41 EQRPAVLWFTGLSGAGKSTVAGALENRLAELGYHTYLLDGDNVR 84 >gi|50545697|ref|XP_500387.1| YALI0B01452p [Yarrowia lipolytica] gi|49646253|emb|CAG82604.1| YALI0B01452p [Yarrowia lipolytica] Length = 465 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 13/107 (12%) Query: 111 PHVILVVGVNGVGKTTVIGKLSKK--------MSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 P ILV G GK+TV+ L K+ +++ L + TFR+ D K A Sbjct: 36 PQSILVHGEPSTGKSTVLKHLLKQSSINHSIILAEQCLTTRILLQRTFRAVVEDSGKTLA 95 Query: 163 DRTSADFVCSEIGSDAAALAYEAFK-QAQAKKVDVLIIDTAGRLHNN 208 D + +C + + A L E FK Q K V+++D +LH N Sbjct: 96 D--DFEIICENVTAFMALL--ERFKAQYDFTKPHVIVLDGLDKLHEN 138 >gi|121535285|ref|ZP_01667099.1| Rhodanese domain protein [Thermosinus carboxydivorans Nor1] gi|121306170|gb|EAX47098.1| Rhodanese domain protein [Thermosinus carboxydivorans Nor1] Length = 346 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%) Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 F RP +I++ G GVGKT ++GKL+KK + L + R + Q+ + +T+ Sbjct: 136 FELRPEIIVICGSTGVGKTALLGKLAKKQIPV---IDLESLANHRGSVFGQVGLGKPQTA 192 Query: 167 ADF 169 +F Sbjct: 193 QNF 195 >gi|291548415|emb|CBL21523.1| ATPase components of ABC transporters with duplicated ATPase domains [Ruminococcus sp. SR1/5] Length = 518 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 ++L++ +L+ PLSKP N+ R I +VG NG+GKTT++ L Sbjct: 323 KMLFETHDLVIGYDEPLSKPLNFTME-RGQKIALVGTNGIGKTTLLRSL 370 >gi|269103376|ref|ZP_06156073.1| putative ABC transporter ATP-binding protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268163274|gb|EEZ41770.1| putative ABC transporter ATP-binding protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 529 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 91/222 (40%), Gaps = 36/222 (16%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 QK + L W+R+ KG + S ++ S+ D R E +L I G + Sbjct: 240 QKTIEKELEWVRQNPKGRQAKSKARMARFEELQSN---DHQKRNETNELFIPP--GERLG 294 Query: 64 QKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 K++E + LTK + RVL D + S P + ++ ++G NG Sbjct: 295 DKVIEVKNLTKSFG-----DRVLIDD--------LSFSMP-------KGAIVGIIGANGA 334 Query: 123 GKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWAD-RTSADFV---CS 172 GK+T+ LS K+ D+G V LA+ D FR + D ++ + AD + Sbjct: 335 GKSTLFKMLSGKEQPDSGTIELGETVSLASVDQFRDSMNDNNTVYQEISEGADIIKINSF 394 Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI + A + K++ L R+H +L AG Sbjct: 395 EIPARAYVSRFNFKGSDHQKRIGDLSGGERNRVHLAKLLKAG 436 >gi|197303582|ref|ZP_03168620.1| hypothetical protein RUMLAC_02308 [Ruminococcus lactaris ATCC 29176] gi|197297316|gb|EDY31878.1| hypothetical protein RUMLAC_02308 [Ruminococcus lactaris ATCC 29176] Length = 518 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 ++L++ +L+ PLSKP N+ R + +VG NG+GKTT++ Sbjct: 323 KMLFETKDLVTGYDEPLSKPLNFSME-RGQKVALVGTNGIGKTTLL 367 >gi|157147595|ref|YP_001454914.1| putative ABC transporter ATP-binding protein [Citrobacter koseri ATCC BAA-895] gi|157084800|gb|ABV14478.1| hypothetical protein CKO_03395 [Citrobacter koseri ATCC BAA-895] Length = 571 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 94/229 (41%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ TKG S ++ S+ R E +L I G Sbjct: 280 ARRKSIEKELEWVRQGTKGRQSKGKARLARFEELNSTEYQK---RNETNELFIPP--GPR 334 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 + K+VE VS R Y LI + + K ++ ++G NG Sbjct: 335 LGDKVVE----------VSNLRKSYGDRLLIDDLSFSVPKG---------AIVGIIGPNG 375 Query: 122 VGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 GK+T+ +S ++ D+G V LA+ D FR A + +W + S +IG Sbjct: 376 AGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKIG 434 Query: 176 -SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 ++ + AY FK Q K+V L GRLH +L G G M+ Sbjct: 435 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 482 >gi|325675122|ref|ZP_08154808.1| sulfate adenylate transferase/adenylyl-sulfate kinase [Rhodococcus equi ATCC 33707] gi|325554083|gb|EGD23759.1| sulfate adenylate transferase/adenylyl-sulfate kinase [Rhodococcus equi ATCC 33707] Length = 633 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 24/43 (55%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 HRP ++ G++G GK+T+ +L +++ G L GD R Sbjct: 458 HRPQIVWFTGLSGSGKSTIANELERRLYTLGCHTYLLDGDNVR 500 >gi|294678636|ref|YP_003579251.1| ABC transporter ATP-binding protein [Rhodobacter capsulatus SB 1003] gi|294477456|gb|ADE86844.1| ABC transporter, ATP-binding protein [Rhodobacter capsulatus SB 1003] Length = 551 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 98/228 (42%), Gaps = 44/228 (19%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QKV + L WIR K + S K + D ++ ++GV+E + I G Sbjct: 260 AKQKVMEKELEWIRAGAKARQAKS-KARIAAYDKMA----EEGVKERVGKAQIIIPNGPR 314 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGVN 120 + K++E K++ D K+L+ N FS P IL V+G N Sbjct: 315 LGGKVIEVEGLKKHMGD---------------KLLIE-----NLSFSLPPGGILGVIGPN 354 Query: 121 GVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSA---- 167 G GK+T+I L + D G + GDT + A +DQ + +W + + Sbjct: 355 GAGKSTLIKMLVGAEAPDEG---TITLGDTVKLAYVDQSRDALDANKNVWEEISGGAELI 411 Query: 168 DFVCSEIGSDAAALAYEAFKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 + +++ S A A+ FK A Q KKV +L R+H +L +G Sbjct: 412 ELGDAQVNSRAYCGAFN-FKGADQQKKVGLLSGGERNRVHMAKLLKSG 458 >gi|312964750|ref|ZP_07778991.1| plasmid partitioning protein [Escherichia coli 2362-75] gi|312290599|gb|EFR18478.1| plasmid partitioning protein [Escherichia coli 2362-75] Length = 150 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 19/100 (19%) Query: 113 VILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 +I VVG N G GKTT+ L+ +++ G +V L GD R+AA K A+R +A + Sbjct: 1 MITVVGGNKGGSGKTTIASNLAIALANKGREVCLLNGDLQRTAA----KHHAEREAAGLL 56 Query: 171 CSEIGSDAAALAYEAFK------QAQAKKVDVLIIDTAGR 204 A E F QA +K D +I+D AGR Sbjct: 57 -------PAITLVEKFDNLTQTLQALNEKFDDVIVDVAGR 89 >gi|312137726|ref|YP_004005062.1| sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase cysnc [Rhodococcus equi 103S] gi|311887065|emb|CBH46374.1| sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase CysNC [Rhodococcus equi 103S] Length = 633 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 24/43 (55%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 HRP ++ G++G GK+T+ +L +++ G L GD R Sbjct: 458 HRPQIVWFTGLSGSGKSTIANELERRLYTLGCHTYLLDGDNVR 500 >gi|251799674|ref|YP_003014405.1| DNA repair protein RadA [Paenibacillus sp. JDR-2] gi|247547300|gb|ACT04319.1| DNA repair protein RadA [Paenibacillus sp. JDR-2] Length = 455 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 30/132 (22%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR----TSAD 168 +ILV G G+GK+T++ + S ++ GLKV+ +G+ ++ Q ++ ADR T + Sbjct: 91 LILVGGDPGIGKSTLLLQTSHALASKGLKVLYISGEE----SVRQTRLRADRLGALTESL 146 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228 FV E + A E+ + D L+ID+ +++ ++ Sbjct: 147 FVLCETNMEQINDAIESVQP------DFLVIDSIQTVYDPNV----------------QS 184 Query: 229 APHSVLQVLDAT 240 AP SV QV + T Sbjct: 185 APGSVAQVRECT 196 >gi|170726043|ref|YP_001760069.1| adenylyl-sulfate kinase [Shewanella woodyi ATCC 51908] gi|169811390|gb|ACA85974.1| Adenylyl-sulfate kinase [Shewanella woodyi ATCC 51908] Length = 222 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 24/43 (55%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 H+P V+ G++G GK+TV + K + D G K L GD R Sbjct: 46 HKPAVLWFTGLSGSGKSTVANAVDKLLYDLGCKTYLLDGDNVR 88 >gi|320527021|ref|ZP_08028210.1| ABC transporter, ATP-binding protein [Solobacterium moorei F0204] gi|320132606|gb|EFW25147.1| ABC transporter, ATP-binding protein [Solobacterium moorei F0204] Length = 520 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 RV+++ +L+ PLSKP ++ + VIL G NG+GKTT++ L Sbjct: 325 RVIFETKQLVIGYDTPLSKPLDFLVERKEKVILS-GANGIGKTTLLKSL 372 >gi|260772131|ref|ZP_05881048.1| adenylylsulfate kinase [Vibrio metschnikovii CIP 69.14] gi|260612998|gb|EEX38200.1| adenylylsulfate kinase [Vibrio metschnikovii CIP 69.14] Length = 205 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 RP V+ G++G GK+T+ G L +++++ G L GD R Sbjct: 29 QQRPAVLWFTGLSGAGKSTIAGALEQRLAELGYHTYLLDGDNVR 72 >gi|238758585|ref|ZP_04619761.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia aldovae ATCC 35236] gi|238703285|gb|EEP95826.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia aldovae ATCC 35236] Length = 548 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 91/229 (39%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG + K K + ++ R E +L I G Sbjct: 257 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E E L+K Y + LI + L K ++ ++G N Sbjct: 312 LGDKVLEVEHLSKSYGDRL-----------LIDDLTFALPKG---------AIVGIIGPN 351 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G V LA+ D FR D +W + + + Sbjct: 352 GAGKSTLFRMLSGQEQPDSGTISLGDTVQLASVDQFRDNMDDSKTVWEEVSGGQDIMKIG 411 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 EI S A + Q K+V L GR+H +L G G M+ Sbjct: 412 NFEIPSRAYVGRFNFKGIDQGKRVGELSGGERGRIHLAKLLQVG-GNML 459 >gi|164687582|ref|ZP_02211610.1| hypothetical protein CLOBAR_01223 [Clostridium bartlettii DSM 16795] gi|164603356|gb|EDQ96821.1| hypothetical protein CLOBAR_01223 [Clostridium bartlettii DSM 16795] Length = 516 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 18/103 (17%) Query: 46 REELEDLLIRSDIGVAVA------QKIVE--ELL---------TKRYAKDVSVQRVLYDV 88 R++LED + R+ VA QKI++ E+L T + + R++++ Sbjct: 267 RKKLEDFVARNKARVATRGMANSRQKILDKMEILERPKEKLKPTFNFRNARAAARIIFET 326 Query: 89 SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +L+ PL+KP N+ R I + G+NG+GK+T++ L Sbjct: 327 KDLVLGYNEPLTKPLNFQLE-RGQKIALKGMNGIGKSTLLRTL 368 >gi|167623136|ref|YP_001673430.1| putative ABC transporter ATP-binding protein [Shewanella halifaxensis HAW-EB4] gi|167353158|gb|ABZ75771.1| ABC transporter related [Shewanella halifaxensis HAW-EB4] Length = 555 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG S ++ ++ D R E +L I G Sbjct: 264 ARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTN---DYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E LTK Y V + + + V + ++ ++G N Sbjct: 319 LGDKVIEINNLTKSYGDRVLIDDLTFSVP--------------------KGAIVGIIGAN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVC--- 171 G GK+T+ +S + D+G V +A+ + FR + D+ +W + + + Sbjct: 359 GAGKSTLFKMISGAEQPDSGTVELGESVQIASVEQFRDSMNDKNTVWQEISDGQDIMRIN 418 Query: 172 -SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 +EI S A + Q K + L R+H +L AG Sbjct: 419 NTEIPSRAYVGRFNFRGGDQQKIIGTLSGGERNRVHLAKLLQAG 462 >gi|74317196|ref|YP_314936.1| flagellar biosynthetic protein FlhF [Thiobacillus denitrificans ATCC 25259] gi|74056691|gb|AAZ97131.1| flagellar biosynthetic protein FlhF [Thiobacillus denitrificans ATCC 25259] Length = 375 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 18/184 (9%) Query: 116 VVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173 +VG G GKTT + KL+ + + V L A D +R A QL ++A+ V Sbjct: 159 LVGSTGSGKTTTLAKLAARAVEHHGSEGVALVAADPYRVGAHAQLAVYAELLG---VALH 215 Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233 + D LA + A + ++IDTAG A R RLD + Sbjct: 216 LAGDPDELA-NLLPRLSAHTL--VLIDTAG--------FAPSDPRSRAFDRLDAIGVQRL 264 Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293 V A + Q A + M G I+TK+D T + G + ++ H++ + ++ G+ Sbjct: 265 AVV--AASQQGAAIEQAMARFGRGAKACILTKLDETPQLGAALDSLIRHRLALAYVTGGQ 322 Query: 294 GIND 297 + + Sbjct: 323 RVPE 326 >gi|166033418|ref|ZP_02236247.1| hypothetical protein DORFOR_03144 [Dorea formicigenerans ATCC 27755] gi|166026603|gb|EDR45360.1| hypothetical protein DORFOR_03144 [Dorea formicigenerans ATCC 27755] Length = 526 Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 RY K + + L++ +L+ PLSKP N R I +VG NG+GKTT++ Sbjct: 324 RYGK--TPGKFLFETHDLVTGYDEPLSKPLNLSME-RGQKIALVGTNGIGKTTLL 375 >gi|238797534|ref|ZP_04641032.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia mollaretii ATCC 43969] gi|238718675|gb|EEQ10493.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia mollaretii ATCC 43969] Length = 548 Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 91/229 (39%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG + K K + ++ R E +L I G Sbjct: 257 ARRKSIQKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E E L+K Y + LI + L K ++ ++G N Sbjct: 312 LGDKVLEVEHLSKSYGDRL-----------LIDDLTFALPKG---------AIVGIIGPN 351 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G V LA+ D FR D +W + + + Sbjct: 352 GAGKSTLFRMLSGQEQPDSGTISLGDTVQLASVDQFRDNMDDSKTVWEEVSGGQDIMKIG 411 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 EI S A + Q K+V L GR+H +L G G M+ Sbjct: 412 NFEIPSRAYVGRFNFKGIDQGKRVGELSGGERGRIHLAKLLQVG-GNML 459 >gi|300866452|ref|ZP_07111144.1| cobalamin synthesis protein, P47K [Oscillatoria sp. PCC 6506] gi|300335556|emb|CBN56304.1| cobalamin synthesis protein, P47K [Oscillatoria sp. PCC 6506] Length = 382 Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 15/132 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169 V ++ G G GKTT++ + + GLK + + F ID +L + +D + Sbjct: 23 VTIITGFLGSGKTTLLNHI--LTNQEGLKTAVLVNE-FGEIGIDNELIVTSDDNMVELNN 79 Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +C I D Y+ ++ + K+D L+++T G + + +G +R + RLD Sbjct: 80 GCICCTINEDLVNAVYKVLERPE--KLDYLVVETTGLADPLPVALTFLGTELRDMTRLD- 136 Query: 228 HAPHSVLQVLDA 239 S++ V+DA Sbjct: 137 ----SIVTVVDA 144 >gi|172038140|ref|YP_001804641.1| hypothetical protein cce_3227 [Cyanothece sp. ATCC 51142] gi|171699594|gb|ACB52575.1| unknown [Cyanothece sp. ATCC 51142] Length = 359 Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 16/170 (9%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSA 167 H V ++ G G GKTT++ + G+K + + F ID +L + D Sbjct: 19 HGLPVTIITGFLGSGKTTLLNHILTNQE--GIKTAVLVNE-FGEIGIDNELIVTTDDNMV 75 Query: 168 DF----VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + VC I D Y+ ++ + KVD LI++T G + + +G +R + Sbjct: 76 ELNNGCVCCTINEDLVQAVYKVLERPE--KVDYLIVETTGLADPLPVALTFLGTELRDMT 133 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHA-VAGTTGLIMTKMDGTARG 272 RLD S++ ++D L E H+ +A +++ K D G Sbjct: 134 RLD-----SIVTMVDCANFSLDLFNSEAAHSQIAYGDIIVLNKTDLVDEG 178 >gi|119952760|ref|YP_950167.1| partitioning protein parA family [Arthrobacter aurescens TC1] gi|119951890|gb|ABM10799.1| putative partitioning protein, parA-family [Arthrobacter aurescens TC1] Length = 210 Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 19/100 (19%) Query: 113 VILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA-DRTSAD- 168 +I+VVG GVGK+TV+ L+ +++ G +V + GD RS A WA DR A Sbjct: 1 MIIVVGSEKGGVGKSTVVTNLAVELAKRGRRVAVVDGDRQRSTA-----RWAVDREEAGH 55 Query: 169 ----FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 FV ++GS +E ++ + DV+++D AG+ Sbjct: 56 QPRIFVVEKLGS-----LHETLRELD-EGYDVVLVDVAGK 89 >gi|300690266|ref|YP_003751261.1| ATPase component of ABC transporter [Ralstonia solanacearum PSI07] gi|299077326|emb|CBJ49952.1| putative ATPase component of ABC transporter [Ralstonia solanacearum PSI07] Length = 555 Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 97/228 (42%), Gaps = 44/228 (19%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG + S K + D ++S+ R E +++ I +G Sbjct: 264 ARQKALKKELEWVRQNPKGRQAKS-KARLARFDELNSQEYQK--RNETQEIFI--PVGER 318 Query: 62 VAQKIVEEL-LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGV 119 + ++VE + ++K Y R+L D N +F+ I+ ++G Sbjct: 319 LGNEVVEFVNVSKGYG-----DRLLID----------------NLNFTIPAGAIVGIIGP 357 Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 NG GK+T+ L+ K+ D G+ M G T + A +DQ + D + F G+D Sbjct: 358 NGAGKSTLFRMLTGKEQPDTGVIKM---GPTVKLAYVDQSRDALDGSKTVFEEISGGADI 414 Query: 179 AALA-YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214 + YE +A Q K V L GRLH L+AG Sbjct: 415 LTVGRYETPSRAYIGRFNFKGGDQQKHVGTLSGGERGRLHLAKTLIAG 462 >gi|261823106|ref|YP_003261212.1| ABC transporter ATP-binding protein [Pectobacterium wasabiae WPP163] gi|261607119|gb|ACX89605.1| ABC transporter related protein [Pectobacterium wasabiae WPP163] Length = 555 Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 91/224 (40%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + + R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTEYQKRNETNELFIPP--GAR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K+VE L+K Y +R L D + S P + ++ ++G N Sbjct: 319 LGDKVVEVTNLSKSYG-----ERQLIDG--------LSFSVP-------KGAIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S ++ D+G V LA+ D FR A + +W + + + Sbjct: 359 GAGKSTLFRMMSGQEQPDSGAIELGETVKLASVDQFRDAMDNSKTVWEEVSGGQDIMRVG 418 Query: 175 GSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 ++ + AY FK Q K+V L GRLH +L G Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462 >gi|149177888|ref|ZP_01856486.1| hypothetical protein PM8797T_06095 [Planctomyces maris DSM 8797] gi|148843228|gb|EDL57593.1| hypothetical protein PM8797T_06095 [Planctomyces maris DSM 8797] Length = 368 Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 25/41 (60%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 +H+ I+V G G GKTT +G+L+K SD GL V + D Sbjct: 2 AHQIKFIMVGGFLGAGKTTTLGRLAKYYSDQGLNVGVVTND 42 >gi|86147607|ref|ZP_01065917.1| adenylylsulfate kinase [Vibrio sp. MED222] gi|85834646|gb|EAQ52794.1| adenylylsulfate kinase [Vibrio sp. MED222] Length = 206 Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 99 LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 + K F D S +P V+ G++G GK+TV G L +++ G L GD R Sbjct: 19 IDKTFRADLKSQKPAVLWFTGLSGSGKSTVAGALENRLAQLGYHTYLLDGDNVRHGLCSD 78 Query: 158 L 158 L Sbjct: 79 L 79 >gi|218710703|ref|YP_002418324.1| adenylylsulfate kinase [Vibrio splendidus LGP32] gi|218323722|emb|CAV20071.1| Adenylylsulfate kinase [Vibrio splendidus LGP32] Length = 206 Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 99 LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 + K F D S +P V+ G++G GK+TV G L +++ G L GD R Sbjct: 19 IDKTFRADLKSQKPAVLWFTGLSGSGKSTVAGALENRLAQLGYHTYLLDGDNVRHGLCSD 78 Query: 158 L 158 L Sbjct: 79 L 79 >gi|329735442|gb|EGG71731.1| ABC transporter, ATP-binding protein [Staphylococcus epidermidis VCU028] Length = 644 Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P++ P N + H I ++G NGVGKTT+I +++K + G +++ A Q Sbjct: 343 PITLPINLEVFKGDH-IAIIGPNGVGKTTLIKTIAEKQNKLGGQIIFGANLQIGYYDQKQ 401 Query: 158 LKIWADRTSADFVCSE 173 + +++T D+V + Sbjct: 402 AEFKSNKTILDYVWDQ 417 >gi|254508974|ref|ZP_05121080.1| adenylylsulfate kinase [Vibrio parahaemolyticus 16] gi|219548078|gb|EED25097.1| adenylylsulfate kinase [Vibrio parahaemolyticus 16] Length = 205 Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 25/51 (49%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +P V+ G++G GK+TV G L K+++ G L GD R L Sbjct: 29 QQKPAVLWFTGLSGAGKSTVAGALENKLAELGYHTYLLDGDNVRHGLCSDL 79 >gi|16763372|ref|NP_458989.1| ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144850|ref|NP_808192.1| ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213051982|ref|ZP_03344860.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427582|ref|ZP_03360332.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213650715|ref|ZP_03380768.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289825540|ref|ZP_06544741.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25384378|pir||AE1074 conserved hypothetical ABC transporter STY4928 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505681|emb|CAD03412.1| conserved hypothetical ABC transporter [Salmonella enterica subsp. enterica serovar Typhi] gi|29140489|gb|AAO72052.1| conserved hypothetical ABC transporter [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 555 Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 92/225 (40%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + ++ R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNSVEYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E L K Y V + + + V + ++ ++G N Sbjct: 319 LGDKVIEVSNLRKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 GVGK+T+ +S ++ D+G V LA+ D FR A + +W + S +I Sbjct: 359 GVGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 417 Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 G ++ + AY FK Q K+V L GRLH +L G Sbjct: 418 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462 >gi|220931234|ref|YP_002508142.1| hydrogenase accessory protein HypB [Halothermothrix orenii H 168] gi|219992544|gb|ACL69147.1| hydrogenase accessory protein HypB [Halothermothrix orenii H 168] Length = 215 Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 6/92 (6%) Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 +VG G GKTT++ K+ +K D K+++ GD + + ++LK + + + +G Sbjct: 35 LVGSPGAGKTTILEKIIEKF-DNTRKIVVIEGDLYTTRDAERLKKYEIQVVQ---INTMG 90 Query: 176 SD--AAALAYEAFKQAQAKKVDVLIIDTAGRL 205 + A + ++A K+ +++D LII+ G L Sbjct: 91 ACHLEAGMVWQALKEVNLEEIDFLIIENVGNL 122 >gi|294497176|ref|YP_003560876.1| putative efflux ABC transporter ATP-binding protein [Bacillus megaterium QM B1551] gi|294347113|gb|ADE67442.1| putative efflux ABC transporter, ATP-binding protein [Bacillus megaterium QM B1551] Length = 518 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 +++++ S+L+ PLSKP N R I +VG NG+GKTT++ Sbjct: 323 KLIFETSDLVIGYEEPLSKPLNLKME-RGQKIALVGANGIGKTTLL 367 >gi|271502122|ref|YP_003335148.1| ABC transporter-like protein [Dickeya dadantii Ech586] gi|270345677|gb|ACZ78442.1| ABC transporter related protein [Dickeya dadantii Ech586] Length = 554 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 100/233 (42%), Gaps = 45/233 (19%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG + K + D ++S ++ R E +L I G Sbjct: 264 ARRKSIEKELEWVRQNPKGRQAKG-KARLARFDELNS--VEYQKRNETSELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E + LTK Y RVL D N F+ + ++ ++G Sbjct: 319 LGDKVLEVQNLTKSYG-----DRVLID----------------NLSFAIPKGSIVGIIGP 357 Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFV 170 NG GK+T+ LS ++ D+G ++ GDT + A++DQ + +W + + + Sbjct: 358 NGAGKSTLFRMLSAQEQPDSG---SISLGDTVQLASVDQFRDKMDGSKTVWEEVSGGQDI 414 Query: 171 CS----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 EI S A + Q K++ L GR+H +L G G M+ Sbjct: 415 MRIGNFEIPSRAYVGRFNFKGVDQGKRIGELSGGERGRVHLAKLLQVG-GNML 466 >gi|170696258|ref|ZP_02887390.1| ABC transporter related [Burkholderia graminis C4D1M] gi|170138818|gb|EDT07014.1| ABC transporter related [Burkholderia graminis C4D1M] Length = 555 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 92/227 (40%), Gaps = 42/227 (18%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG + S K I D R E +++ I +G Sbjct: 264 ARQKAIKKELEWVRQNPKGRQAKS---KARIARFEELNSQDYQKRNETQEIFI--PVGDR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + +++E + ++K Y + + V + V P ++ ++G N Sbjct: 319 LGNEVIEFKNVSKSYGDRLLLDNVSFKV---------PAGA-----------IVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 G GK+T+ L+ ++ D+G VM G T + A +DQ + D T F G+D Sbjct: 359 GAGKSTLFRMLTGREQPDSGEIVM---GPTVKLAYVDQSRDALDSTKTVFEEISGGADVL 415 Query: 180 ALA-YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214 + YE +A Q K V L GRLH L+AG Sbjct: 416 TVGKYETPSRAYIGRFNFKGGDQQKTVGNLSGGERGRLHLAKTLIAG 462 >gi|293392951|ref|ZP_06637268.1| ABC superfamily ATP binding cassette transporter, ABC protein [Serratia odorifera DSM 4582] gi|291424485|gb|EFE97697.1| ABC superfamily ATP binding cassette transporter, ABC protein [Serratia odorifera DSM 4582] Length = 548 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 93/227 (40%), Gaps = 42/227 (18%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S ++ S+ R E +L I G Sbjct: 257 ARRKSIEKELEWVRQGAKGRQSKGKARLARFEELNSTEYQK---RNETNELFIPP--GAR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K+VE L K Y RVL D + S P + ++ ++G N Sbjct: 312 LGDKVVEVSNLRKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGPN 351 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFVC 171 G GK+T+ +S ++ D+G V+ GDT + A++DQ + +W + + + Sbjct: 352 GAGKSTLFRMMSGQEQPDSGSIVL---GDTVKLASVDQFRDSMDNGKTVWEEVSGGQDIM 408 Query: 172 SEIGSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 ++ + AY FK Q K+V L GRLH +L G Sbjct: 409 RIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 455 >gi|188532826|ref|YP_001906623.1| putative ABC transporter ATP-binding protein [Erwinia tasmaniensis Et1/99] gi|188027868|emb|CAO95725.1| Putative ATP-binding component of a transport system [Erwinia tasmaniensis Et1/99] Length = 555 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 55/226 (24%), Positives = 91/226 (40%), Gaps = 40/226 (17%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + D R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNSTDYQKRNETNELFIPP--GAR 318 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 + K++E VS R Y LI + + K ++ ++G NG Sbjct: 319 LGDKVLE----------VSNLRKSYGDRLLIDDLTFSVPKG---------AIVGIIGPNG 359 Query: 122 VGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFVCS 172 GK+T+ +S ++ D+G V+ GDT + A++DQ + +W + + + Sbjct: 360 AGKSTLFRMMSGQEQPDSGSIVL---GDTVKLASVDQFRDSMDNSKTVWEEVSGGQDIMR 416 Query: 173 EIGSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 ++ + AY FK Q K+V L GRLH +L G Sbjct: 417 IGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462 >gi|169351352|ref|ZP_02868290.1| hypothetical protein CLOSPI_02132 [Clostridium spiroforme DSM 1552] gi|169291574|gb|EDS73707.1| hypothetical protein CLOSPI_02132 [Clostridium spiroforme DSM 1552] Length = 517 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +VL++ +L+ PL+KP N F R I + GVNG+GKTT++ L Sbjct: 323 KVLFECKDLVIGYNSPLTKPMNIIFE-RNKKIAIKGVNGLGKTTLLKTL 370 >gi|32475116|ref|NP_868110.1| bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein [Rhodopirellula baltica SH 1] gi|81660239|sp|Q7UMW2|CYSNC_RHOBA RecName: Full=Bifunctional enzyme CysN/CysC; Includes: RecName: Full=Sulfate adenylyltransferase subunit 1; AltName: Full=ATP-sulfurylase large subunit; AltName: Full=Sulfate adenylate transferase; Short=SAT; Includes: RecName: Full=Adenylyl-sulfate kinase; AltName: Full=APS kinase; AltName: Full=ATP adenosine-5'-phosphosulfate 3'-phosphotransferase gi|32445656|emb|CAD75662.1| cysN/cysC bifunctionyal enzyme [Rhodopirellula baltica SH 1] Length = 647 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 F +P +L+ G+ G GKT++ + +K+ DAG V + G+ R L AD S Sbjct: 470 FGQKPATVLLTGLTGSGKTSIARAVERKLFDAGRSVAVVDGEFVRRGLSRDLGFSADDRS 529 Query: 167 ADF 169 + Sbjct: 530 ENL 532 >gi|327539002|gb|EGF25637.1| bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein [Rhodopirellula baltica WH47] Length = 647 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 F +P +L+ G+ G GKT++ + +K+ DAG V + G+ R L AD S Sbjct: 470 FGQKPATVLLTGLTGSGKTSIARAVERKLFDAGRSVAVVDGEFVRRGLSRDLGFSADDRS 529 Query: 167 ADF 169 + Sbjct: 530 ENL 532 >gi|309775448|ref|ZP_07670451.1| ABC transporter, ATP-binding protein [Erysipelotrichaceae bacterium 3_1_53] gi|308916837|gb|EFP62574.1| ABC transporter, ATP-binding protein [Erysipelotrichaceae bacterium 3_1_53] Length = 517 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + D + RV++D EL+ PL+KP + V + GVNG+GKTT++ L Sbjct: 315 FLSDRAPGRVIFDAQELVIGYDEPLTKPMRLELERNARVA-IKGVNGLGKTTLLKTL 370 >gi|238782713|ref|ZP_04626743.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia bercovieri ATCC 43970] gi|238716373|gb|EEQ08355.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia bercovieri ATCC 43970] Length = 548 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 91/229 (39%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG + K K + ++ R E +L I G Sbjct: 257 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E E L+K Y + LI + L K ++ ++G N Sbjct: 312 LGDKVLEVEHLSKSYGDRL-----------LIDDLTFALPKG---------AIVGIIGPN 351 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G V LA+ D FR D +W + + + Sbjct: 352 GAGKSTLFRMLSGQEQPDSGTISLGDTVQLASVDQFRDNMDDSKTVWEEVSGGQDIMKIG 411 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 EI S A + Q K+V L GR+H +L G G M+ Sbjct: 412 NFEIPSRAYVGRFNFKGIDQGKRVGELSGGERGRIHLAKLLQVG-GNML 459 >gi|326804276|ref|YP_004322094.1| DNA repair protein RadA [Aerococcus urinae ACS-120-V-Col10a] gi|326650375|gb|AEA00558.1| DNA repair protein RadA [Aerococcus urinae ACS-120-V-Col10a] Length = 462 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 62/111 (55%), Gaps = 15/111 (13%) Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR---TSADFVC 171 L+ G G+GK+T++ +++K++SD G +V+ +G+ ++ Q+K+ ADR ADF Sbjct: 95 LIGGDPGIGKSTLLLQVAKQLSDNGGRVLYVSGEE----SLHQIKMRADRLGYQDADFF- 149 Query: 172 SEIGSDAAALAYE-AFKQAQAKKVDVLIIDTAGRL-HNNSILMAGIGKMIR 220 + ++ LA + A QA D ++ID+ + H N+ +AG +R Sbjct: 150 --VYAETDLLAIQAAISDTQA---DFVVIDSIQTMVHPNNESLAGSVSQVR 195 >gi|325285965|ref|YP_004261755.1| DNA repair protein RadA [Cellulophaga lytica DSM 7489] gi|324321419|gb|ADY28884.1| DNA repair protein RadA [Cellulophaga lytica DSM 7489] Length = 453 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 17/100 (17%) Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD----FV 170 L+ G G+GK+T++ ++S K+ K + +G+ + Q+K+ ADR + + F+ Sbjct: 95 LLGGEPGIGKSTLLLQISLKLP---YKTLYVSGEESQK----QIKMRADRITTNNDTCFI 147 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 +E + FKQ +A + D+L+ID+ LH++ I Sbjct: 148 LTETKTQ------NIFKQVEAIEPDILVIDSIQTLHSDYI 181 >gi|148978552|ref|ZP_01815004.1| fused predicted transporter subunit of ABC superfamily: ATP-binding component [Vibrionales bacterium SWAT-3] gi|145962341|gb|EDK27622.1| fused predicted transporter subunit of ABC superfamily: ATP-binding component [Vibrionales bacterium SWAT-3] Length = 555 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 30/178 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG + S ++ + + R E +L I G Sbjct: 264 ARQKTIEKELEWVRQNPKGRQAKSKARMARFEELTTGQYQK---RNETNELFIPP--GER 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E + LTK Y RVL D + S P + ++ +VG N Sbjct: 319 LGDKVLEVKNLTKSYG-----DRVLIDD--------LSFSMP-------KGAIVGIVGAN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 G GK+T+ LS + D+G + G+T + A++DQ + D T F G+D Sbjct: 359 GAGKSTLFKMLSGAEQPDSG---TVELGETVKLASVDQFRDSMDDTKTVFQEISEGAD 413 >gi|157368916|ref|YP_001476905.1| putative ABC transporter ATP-binding protein [Serratia proteamaculans 568] gi|157320680|gb|ABV39777.1| ABC transporter-related protein [Serratia proteamaculans 568] Length = 555 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 40/226 (17%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S ++ S+ R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQSKGKARLARFEELNSTEYQK---RNETNELFIPP--GAR 318 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 + K+VE VS R Y LI + + K ++ ++G NG Sbjct: 319 LGDKVVE----------VSNLRKSYGDRVLIDDLTFAVPKG---------AIVGIIGPNG 359 Query: 122 VGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFVCS 172 GK+T+ +S ++ D+G V+ GDT + A++DQ + +W + + + Sbjct: 360 AGKSTLFRMMSGQEQPDSGSIVL---GDTVKLASVDQFRDSMDNSKTVWEEVSGGQDIMR 416 Query: 173 EIGSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 ++ + AY FK Q K+V L GRLH +L G Sbjct: 417 IGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462 >gi|158319160|ref|YP_001511667.1| ABC transporter related [Alkaliphilus oremlandii OhILAs] gi|158139359|gb|ABW17671.1| ABC transporter related [Alkaliphilus oremlandii OhILAs] Length = 518 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 18/172 (10%) Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 R++++ +L+ PLSKP N R I +VG NG+GKTT++ + ++ +V Sbjct: 323 RLIFETRDLVIGYDEPLSKPLNLRME-RGQKIALVGANGLGKTTLLRSILGEIKALSGEV 381 Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA------KKVDV 196 L GDT + Q A+ + E+ D +L+ + A A K ++ Sbjct: 382 EL--GDTLYTGYFQQEIKEANYNTC---IEEVWHDFPSLSQYEVRAALAKCGLTTKHIES 436 Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVL------KRLDPHAPHSVLQVLDATTG 242 I+ +G H L I K VL LD A + + L A G Sbjct: 437 KIVVLSGGEHAKVRLCKLINKETNVLVLDEPTNHLDVDAKEELKRALKAYKG 488 >gi|84387778|ref|ZP_00990793.1| adenylylsulfate kinase [Vibrio splendidus 12B01] gi|84377293|gb|EAP94161.1| adenylylsulfate kinase [Vibrio splendidus 12B01] Length = 206 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 99 LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 + K F D S +P V+ G++G GK+TV G L +++ G L GD R Sbjct: 19 IDKTFRSDLKSQKPAVLWFTGLSGSGKSTVAGALENRLAQLGYHTYLLDGDNVRHGLCSD 78 Query: 158 L 158 L Sbjct: 79 L 79 >gi|284052505|ref|ZP_06382715.1| cobalamin synthesis protein P47K [Arthrospira platensis str. Paraca] Length = 247 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 12/121 (9%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA---DRTSADF 169 V ++ G G GKTT++ + GLK + + F ID I A D T + Sbjct: 22 VTIITGFLGSGKTTLLNYILSNQQ--GLKTAVLVNE-FGEVGIDNELIVATDADNTMVEL 78 Query: 170 ----VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 VC I D Y+ ++ + KVD ++++T G + + +G +R + RL Sbjct: 79 SNGCVCCTINEDLVNAVYKVLERPE--KVDYMVVETTGLADPLPVALTFLGTELRDMTRL 136 Query: 226 D 226 D Sbjct: 137 D 137 >gi|289208062|ref|YP_003460128.1| ABC transporter [Thioalkalivibrio sp. K90mix] gi|288943693|gb|ADC71392.1| ABC transporter related protein [Thioalkalivibrio sp. K90mix] Length = 555 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 89/221 (40%), Gaps = 36/221 (16%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 K L W+R KG + S + +I SS D R E +++ I G + Sbjct: 267 KAMESELEWVRSNPKGRGAKSKARLKRFEEIASS---DYQKRSETKEIYIPP--GPRLGD 321 Query: 65 KIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 K++E E L+K + RVLY + S P R +I V+G NGVG Sbjct: 322 KVLEVENLSKHFG-----DRVLY--------QGLSFSVP-------RGALIGVIGPNGVG 361 Query: 124 KTTVIGKLSKKMS------DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 KTT+ ++ + + G V LA D R A D+ +W + ++ + Sbjct: 362 KTTLFRMIAGQDQPDDGSIELGETVQLAYVDQSRDALQDEKTVWEEISNGQDIIQVGNFQ 421 Query: 178 AAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 + AY FK Q K++ L R+H +L +G Sbjct: 422 MPSRAYVGRFNFKGTDQQKRMKELSGGERNRVHLAKLLQSG 462 >gi|253690039|ref|YP_003019229.1| ABC transporter related [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756617|gb|ACT14693.1| ABC transporter related [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 555 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 91/224 (40%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + + R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTEYQKRNETNELFIPP--GAR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K+VE L+K Y +R L D + S P + ++ ++G N Sbjct: 319 LGDKVVEVTNLSKSYG-----ERQLIDG--------LSFSVP-------KGAIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S ++ D+G V LA+ D FR A + +W + + + Sbjct: 359 GAGKSTLFRMMSGQEQPDSGTIELGETVKLASVDQFRDAMDNSKTVWEEVSGGQDIMRIG 418 Query: 175 GSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 ++ + AY FK Q K+V L GRLH +L G Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462 >gi|159030631|emb|CAO88299.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 365 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 10/119 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169 V ++ G G GKTT++ + + GLK + + F ID +L I +D + + Sbjct: 21 VTIITGFLGSGKTTLLNHILS--NQQGLKTAVLVNE-FGEIGIDNELIISSDDSMVELNN 77 Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 +C I D Y+ ++ + K+D L+++T G + + +G +R + RLD Sbjct: 78 GCICCTINEDLIQAVYKILERPE--KIDYLVVETTGLADPLPVALTFLGTELREMTRLD 134 >gi|109897971|ref|YP_661226.1| adenylylsulfate kinase [Pseudoalteromonas atlantica T6c] gi|109700252|gb|ABG40172.1| adenylylsulfate kinase [Pseudoalteromonas atlantica T6c] Length = 198 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 25/43 (58%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 +P V+ + G++G GK+T+ L KK++D G L GD R Sbjct: 23 QKPCVVWLTGLSGSGKSTIANLLEKKLADNGKHTYLLDGDNVR 65 >gi|71907429|ref|YP_285016.1| putative ABC transporter ATP-binding protein [Dechloromonas aromatica RCB] gi|71847050|gb|AAZ46546.1| ABC transporter related protein [Dechloromonas aromatica RCB] Length = 554 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 103/242 (42%), Gaps = 45/242 (18%) Query: 12 SWIRKLTKGFA-------STSLKLKEGITDIISSRRLD---DGVREELEDLLIRSDIGVA 61 WI +L +G S+ L+ KE + ++++D +++ELE +RS+ Sbjct: 226 EWILELDRGHGIPYKGNYSSWLEQKEARLET-ENKQIDAHMKAMKQELE--WVRSNPKAR 282 Query: 62 VAQKI-----VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPF-------NWD 106 A+ EE+ ++ Y K Q + V E + ++ +K F N Sbjct: 283 QAKSKSRLARFEEMSSQEYQKRNETQEIFIPVGERLGDKVIEFNGVTKSFGDKLLMDNVS 342 Query: 107 FSHRPHVIL-VVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 F+ I+ ++G NG GK+T+ ++ ++ D+G ++ G T + A +DQ + D Sbjct: 343 FNIPAGAIVGIIGPNGAGKSTLFKMITGQQQPDSGEVII---GPTVKMAYVDQSRDCLDG 399 Query: 165 TSADFVCSEIGSD-----------AAALAYEAFKQA-QAKKVDVLIIDTAGRLHNNSILM 212 T F GSD A + FK A Q K+V L GRLH LM Sbjct: 400 TKTVFEELAQGSDILQIGKFEMPSRAYIGRFNFKGADQGKQVGNLSGGERGRLHLAKTLM 459 Query: 213 AG 214 AG Sbjct: 460 AG 461 >gi|14521377|ref|NP_126853.1| adenylylsulfate kinase [Pyrococcus abyssi GE5] gi|7387598|sp|P56858|CYSC_PYRAB RecName: Full=Probable adenylyl-sulfate kinase; AltName: Full=APS kinase; AltName: Full=ATP adenosine-5'-phosphosulfate 3'-phosphotransferase; AltName: Full=Adenosine-5'-phosphosulfate kinase gi|5458595|emb|CAB50083.1| cysC adenylylsulfate kinase (EC 2.7.1.25) APS kinase [Pyrococcus abyssi GE5] Length = 174 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 I + G +G GKTT+ KL+KK+ + G KV + GDT R L Sbjct: 6 IWLTGPSGAGKTTLAVKLAKKLREMGYKVEILDGDTIRKTLYPNL 50 >gi|260779464|ref|ZP_05888354.1| adenylylsulfate kinase [Vibrio coralliilyticus ATCC BAA-450] gi|260604273|gb|EEX30577.1| adenylylsulfate kinase [Vibrio coralliilyticus ATCC BAA-450] Length = 205 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 24/44 (54%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 +P V+ G++G GK+TV G L K+++ G L GD R Sbjct: 29 QQKPVVLWFTGLSGAGKSTVAGALENKLAEQGYHTYLLDGDNVR 72 >gi|213852193|ref|ZP_03381725.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 275 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 12/113 (10%) Query: 113 VILVVGVNGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTS 166 ++ ++G NGVGK+T+ +S ++ D+G V LA+ D FR A + +W + S Sbjct: 71 IVGIIGPNGVGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVS 129 Query: 167 ADFVCSEIG-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 +IG ++ + AY FK Q K+V L GRLH +L G Sbjct: 130 GGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 182 >gi|153813767|ref|ZP_01966435.1| hypothetical protein RUMOBE_04201 [Ruminococcus obeum ATCC 29174] gi|149830140|gb|EDM85234.1| hypothetical protein RUMOBE_04201 [Ruminococcus obeum ATCC 29174] Length = 518 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 ++L++ +L+ PLSKP N+ R I +VG NG+GKTT++ Sbjct: 323 KMLFETHDLVIGYDEPLSKPLNFTME-RGQKIALVGTNGIGKTTLL 367 >gi|212224855|ref|YP_002308091.1| cysC adenylylsulfate kinase [Thermococcus onnurineus NA1] gi|212009812|gb|ACJ17194.1| cysC adenylylsulfate kinase [Thermococcus onnurineus NA1] Length = 181 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 27/45 (60%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 I + G +G GKTT+ KL+KK+ + G +V + GDT R +L Sbjct: 13 IWLTGPSGAGKTTLAVKLAKKLREMGYRVEILDGDTIRKTLYPEL 57 >gi|307155312|ref|YP_003890696.1| cobalamin synthesis protein P47K [Cyanothece sp. PCC 7822] gi|306985540|gb|ADN17421.1| cobalamin synthesis protein P47K [Cyanothece sp. PCC 7822] Length = 373 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 10/123 (8%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSA 167 H V ++ G G GKTT++ + GLK + + F ID +L I D Sbjct: 19 HGLPVTIITGFLGSGKTTLLNHILTNQQ--GLKTAVLVNE-FGEIGIDNELIISTDDNMV 75 Query: 168 DF----VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + +C I D Y+ ++ + KVD L+++T G + + +G +R + Sbjct: 76 ELNNGCICCTINEDLVNAVYKVLERPE--KVDYLVVETTGLADPLPVALTFLGTELRDMT 133 Query: 224 RLD 226 RLD Sbjct: 134 RLD 136 >gi|332307039|ref|YP_004434890.1| adenylylsulfate kinase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174368|gb|AEE23622.1| adenylylsulfate kinase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 198 Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 25/43 (58%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 +P V+ + G++G GK+T+ L KK++D G L GD R Sbjct: 23 QKPCVVWLTGLSGSGKSTIANLLEKKLADNGKHTYLLDGDNVR 65 >gi|115522361|ref|YP_779272.1| sulfate adenylyltransferase, large subunit [Rhodopseudomonas palustris BisA53] gi|115516308|gb|ABJ04292.1| sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase [Rhodopseudomonas palustris BisA53] Length = 631 Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 25/43 (58%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 RP V+ + G++G GK+T+ + K++SD G L GD R Sbjct: 457 QRPCVLWLTGLSGAGKSTIANLVEKRLSDLGHHTYLLDGDNLR 499 >gi|323495542|ref|ZP_08100616.1| adenylylsulfate kinase [Vibrio sinaloensis DSM 21326] gi|323319423|gb|EGA72360.1| adenylylsulfate kinase [Vibrio sinaloensis DSM 21326] Length = 206 Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 24/51 (47%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 +P V+ G++G GK+TV G L K++ G L GD R L Sbjct: 29 QQKPAVLWFTGLSGAGKSTVAGALENKLAQQGYHTYLLDGDNVRHGLCSDL 79 >gi|166365887|ref|YP_001658160.1| cobalamin synthesis protein cobW-like protein [Microcystis aeruginosa NIES-843] gi|166088260|dbj|BAG02968.1| cobalamin synthesis protein cobW homolog [Microcystis aeruginosa NIES-843] Length = 367 Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 10/119 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169 V ++ G G GKTT++ + + GLK + + F ID +L I +D + + Sbjct: 21 VTIITGFLGSGKTTLLNHILS--NQQGLKTAVLVNE-FGEIGIDNELIISSDDSMVELNN 77 Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 +C I D Y+ ++ + K+D L+++T G + + +G +R + RLD Sbjct: 78 GCICCTINEDLIQAVYKILERPE--KIDYLVVETTGLADPLPVALTFLGTELREMTRLD 134 >gi|158339981|ref|YP_001521151.1| cobalamin synthesis protein/P47K [Acaryochloris marina MBIC11017] gi|158310222|gb|ABW31837.1| cobalamin synthesis protein/P47K [Acaryochloris marina MBIC11017] Length = 367 Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 15/143 (10%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169 V ++ G G GKTT++ + D + V++ + F ID QL D+ Sbjct: 25 VTIITGFLGSGKTTLLNHILNTSQDLKVAVLV---NEFGDIDIDSQLLTTIDQDMVQLTN 81 Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +C I D Y ++ + K+D ++I+T G I++ +G +R L LD Sbjct: 82 GCICCTINDDLVEAVYSVLEREE--KIDHMVIETTGVADPLPIILTFVGSQLRDLTTLD- 138 Query: 228 HAPHSVLQVLDATTGQNALRQVE 250 SV+ ++D+ T Q E Sbjct: 139 ----SVITLVDSETFTPECFQSE 157 >gi|222833281|gb|EEE71758.1| predicted protein [Populus trichocarpa] Length = 356 Score = 37.0 bits (84), Expect = 3.5, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 24/177 (13%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V+ ++G GVGKTT KL+ + + ++ L D FR A +QL+I+ D V Sbjct: 194 VLALIGPTGVGKTTTTAKLAARYVLRHGADRLALLTTDRFRIGAHEQLRIYGDILG---V 250 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 DAA L F + K ++IIDT G + L I + V AP Sbjct: 251 PVHAVKDAADL---RFALSAMKDKHLVIIDTVGMSQRDRSLSDQIAMLAGV------QAP 301 Query: 231 HSVLQVLDATTGQNALRQVEMFHA--------VAGTTGLIMTKMDGTARGGGLIPIV 279 + +L+ + L E+ HA G G I++K+D G ++ +V Sbjct: 302 MQRVLLLNGAAHGDTLN--EVVHAYRHDAAGDAGGIDGCIISKLDEATHLGSVLDVV 356 >gi|119512535|ref|ZP_01631613.1| hypothetical protein N9414_10832 [Nodularia spumigena CCY9414] gi|119462796|gb|EAW43755.1| hypothetical protein N9414_10832 [Nodularia spumigena CCY9414] Length = 344 Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 10/119 (8%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRT----SA 167 V L+ G G GKTT++ ++ K + + V++ + F ID QL + D+ S Sbjct: 22 VTLITGFLGSGKTTLLNQILKNKENLKVAVLV---NEFGDINIDSQLLVSVDQDMMELSN 78 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 +C I Y ++ + ++D L+I+T G I++ +G +R L LD Sbjct: 79 GCICCTINDGLVDAVYRILEREE--RIDYLVIETTGVADPLPIILTFLGTELRDLTNLD 135 >gi|27364177|ref|NP_759705.1| adenylylsulfate kinase [Vibrio vulnificus CMCP6] gi|37678598|ref|NP_933207.1| adenylylsulfate kinase [Vibrio vulnificus YJ016] gi|320157563|ref|YP_004189942.1| adenylylsulfate kinase [Vibrio vulnificus MO6-24/O] gi|29336649|sp|Q8DE75|CYSC_VIBVU RecName: Full=Adenylyl-sulfate kinase; AltName: Full=APS kinase; AltName: Full=ATP adenosine-5'-phosphosulfate 3'-phosphotransferase; AltName: Full=Adenosine-5'-phosphosulfate kinase gi|56748738|sp|Q7MPF0|CYSC_VIBVY RecName: Full=Adenylyl-sulfate kinase; AltName: Full=APS kinase; AltName: Full=ATP adenosine-5'-phosphosulfate 3'-phosphotransferase; AltName: Full=Adenosine-5'-phosphosulfate kinase gi|27360295|gb|AAO09232.1| Adenylylsulfate kinase [Vibrio vulnificus CMCP6] gi|37197338|dbj|BAC93178.1| adenylylsulfate kinase [Vibrio vulnificus YJ016] gi|319932875|gb|ADV87739.1| adenylylsulfate kinase [Vibrio vulnificus MO6-24/O] Length = 207 Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 24/44 (54%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 +P V+ G++G GK+TV G L ++++ G L GD R Sbjct: 29 QQKPAVLWFTGLSGAGKSTVAGALENRLAEQGFHTYLLDGDNVR 72 >gi|291086094|ref|ZP_06354796.2| ABC transporter, ATP-binding protein YjiK [Citrobacter youngae ATCC 29220] gi|291069347|gb|EFE07456.1| ABC transporter, ATP-binding protein YjiK [Citrobacter youngae ATCC 29220] Length = 548 Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 94/230 (40%), Gaps = 39/230 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + + R E +L I G Sbjct: 257 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTEYQKRNETNELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 ++ K+VE L K Y V + + + V + ++ ++G N Sbjct: 312 LSDKVVEVSNLRKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 351 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S ++ D+G V LA+ D FR A + +W + S +I Sbjct: 352 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 410 Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 G ++ + AY FK Q K+V L GRLH +L G G M+ Sbjct: 411 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 459 >gi|213618532|ref|ZP_03372358.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 527 Score = 37.0 bits (84), Expect = 3.7, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + ++ R E +L I G Sbjct: 236 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNSVEYQKRNETNELFIPP--GPR 290 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E L K Y RVL D + S P + ++ ++G N Sbjct: 291 LGDKVIEVSNLRKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGPN 330 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 GVGK+T+ +S ++ D+G V LA+ D FR A + +W + S +I Sbjct: 331 GVGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 389 Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 G ++ + AY FK Q K+V L GRLH +L G Sbjct: 390 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 434 >gi|251809842|ref|ZP_04824315.1| ABC superfamily ATP binding cassette transporter, ABC protein [Staphylococcus epidermidis BCM-HMP0060] gi|282874499|ref|ZP_06283384.1| ABC transporter, ATP-binding protein [Staphylococcus epidermidis SK135] gi|251806615|gb|EES59272.1| ABC superfamily ATP binding cassette transporter, ABC protein [Staphylococcus epidermidis BCM-HMP0060] gi|281296638|gb|EFA89147.1| ABC transporter, ATP-binding protein [Staphylococcus epidermidis SK135] Length = 644 Score = 37.0 bits (84), Expect = 3.7, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P++ P N + H I ++G NGVGKTT+I +++K G +++ A Q Sbjct: 343 PITLPINLEIFKGDH-IAIIGPNGVGKTTLIKTIAEKQHKLGGQIIFGANLQIGYYDQKQ 401 Query: 158 LKIWADRTSADFVCSE 173 + +++T D+V + Sbjct: 402 AEFKSNKTILDYVWDQ 417 >gi|148977807|ref|ZP_01814363.1| adenylylsulfate kinase [Vibrionales bacterium SWAT-3] gi|145963021|gb|EDK28291.1| adenylylsulfate kinase [Vibrionales bacterium SWAT-3] Length = 206 Score = 37.0 bits (84), Expect = 3.7, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 99 LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 + K F D S +P V+ G++G GK+TV G L +++ G L GD R Sbjct: 19 IDKGFRADLKSQKPAVLWFTGLSGSGKSTVAGALENRLAQLGYHTYLLDGDNVRHGLCSD 78 Query: 158 L 158 L Sbjct: 79 L 79 >gi|116250555|ref|YP_766393.1| gluconokinase [Rhizobium leguminosarum bv. viciae 3841] gi|115255203|emb|CAK06277.1| putative gluconokinase [Rhizobium leguminosarum bv. viciae 3841] Length = 178 Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 75/191 (39%), Gaps = 53/191 (27%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA-----------IDQ 157 +RPH I+V+GV+G GK++V KL++ L + GD AA D+ Sbjct: 6 NRPHAIIVMGVSGCGKSSVGEKLAE-----ALHLAFVEGDALHPAANVEKMSKGIPLTDE 60 Query: 158 LKI-WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216 ++ W DR D S S ++ A K RL+ + + A G Sbjct: 61 DRMPWLDRIGEDIKASLEKSKGIIVSCSALK----------------RLYRDRLRAAAGG 104 Query: 217 KMIRV---------LKRLDPHAPH--------SVLQVLDATTGQNALRQVEMFHAVAGTT 259 K+ V +KR+ H S L L+ TG+ + V++ V G T Sbjct: 105 KLFFVYLEGSRALLMKRMGERKGHFMPVSLLDSQLATLEVPTGEPGVVTVDIDDTVDGIT 164 Query: 260 GLIMTKMDGTA 270 T ++G A Sbjct: 165 A---TALEGLA 172 >gi|170725740|ref|YP_001759766.1| putative ABC transporter ATP-binding protein [Shewanella woodyi ATCC 51908] gi|169811087|gb|ACA85671.1| ABC transporter related [Shewanella woodyi ATCC 51908] Length = 554 Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust. Identities = 51/224 (22%), Positives = 89/224 (39%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ +KG S K K + D R E +L I G Sbjct: 264 ARQKTIAKELEWVRQGSKGRQS---KGKARMARFEELNTNDYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E LTK Y V + + + V + ++ ++G N Sbjct: 319 LGDKVIEINNLTKSYGDRVLIDDLSFTVP--------------------KGAIVGIIGAN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVC--- 171 G GK+T+ +S + D+G V +A+ + FR + D+ +W + + + Sbjct: 359 GAGKSTLFKMISGAEQPDSGTVELGESVQIASVEQFRDSMNDKNTVWQEISGGQDIMRIN 418 Query: 172 -SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 +EI S A + Q K + L R+H +L AG Sbjct: 419 NTEIPSRAYVGRFNFRGGDQQKIIGTLSGGERNRVHLAKLLQAG 462 >gi|27468566|ref|NP_765203.1| vga protein [Staphylococcus epidermidis ATCC 12228] gi|293367725|ref|ZP_06614374.1| ABC superfamily ATP binding cassette transporter, ABC protein [Staphylococcus epidermidis M23864:W2(grey)] gi|27316113|gb|AAO05247.1|AE016749_193 vga protein [Staphylococcus epidermidis ATCC 12228] gi|291318064|gb|EFE58461.1| ABC superfamily ATP binding cassette transporter, ABC protein [Staphylococcus epidermidis M23864:W2(grey)] gi|329736879|gb|EGG73143.1| ABC transporter, ATP-binding protein [Staphylococcus epidermidis VCU045] Length = 644 Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P++ P N + H I ++G NGVGKTT+I +++K G +++ A Q Sbjct: 343 PITLPINLEIFKGDH-IAIIGPNGVGKTTLIKTIAEKQHKLGGQIIFGANLQIGYYDQKQ 401 Query: 158 LKIWADRTSADFVCSE 173 + +++T D+V + Sbjct: 402 AEFKSNKTILDYVWDQ 417 >gi|291571155|dbj|BAI93427.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 367 Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 12/121 (9%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA---DRTSADF 169 V ++ G G GKTT++ + GLK + + F ID I A D T + Sbjct: 22 VTIITGFLGSGKTTLLNYILSNQQ--GLKTAVLVNE-FGEVGIDNELIVATDADNTMVEL 78 Query: 170 ----VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 VC I D Y+ ++ + KVD ++++T G + + +G +R + RL Sbjct: 79 SNGCVCCTINEDLVNAVYKVLERPE--KVDYMVVETTGLADPLPVALTFLGTELRDMTRL 136 Query: 226 D 226 D Sbjct: 137 D 137 >gi|218886159|ref|YP_002435480.1| ABC transporter ATP-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757113|gb|ACL08012.1| ABC transporter related [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 560 Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 16/107 (14%) Query: 113 VILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLK--IWADRTSADF 169 ++ ++G NG GKTT+ L+ + DAG L GDT + A +DQ + + A +T + Sbjct: 356 IVGIIGPNGAGKTTLFKMLAGVETPDAG---ELKIGDTVQVAFVDQNRDSLEAGKTVYEV 412 Query: 170 VCS----------EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206 + E+ + A + Q Q KKVDVL R+H Sbjct: 413 ISEGYETVKLGNREVNARAYCSRFNLMGQDQQKKVDVLSGGERNRVH 459 >gi|156935488|ref|YP_001439405.1| putative ABC transporter ATP-binding protein [Cronobacter sakazakii ATCC BAA-894] gi|156533742|gb|ABU78568.1| hypothetical protein ESA_03347 [Cronobacter sakazakii ATCC BAA-894] Length = 548 Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 93/230 (40%), Gaps = 39/230 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + + R E +L I G Sbjct: 257 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTEYQKRNETNELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K+VE L K Y V + + + V + ++ ++G N Sbjct: 312 LGDKVVEVSHLRKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 351 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S ++ D+G V LA+ D FR A + +W + S +I Sbjct: 352 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 410 Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 G ++ + AY FK Q K+V L GRLH +L G G M+ Sbjct: 411 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 459 >gi|157960987|ref|YP_001501021.1| putative ABC transporter ATP-binding protein [Shewanella pealeana ATCC 700345] gi|157845987|gb|ABV86486.1| ABC transporter related [Shewanella pealeana ATCC 700345] Length = 555 Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust. Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG S ++ ++ D R E +L I G Sbjct: 264 ARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTN---DYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E LTK Y V + + + V + ++ ++G N Sbjct: 319 LGDKVIEITNLTKSYGDRVLIDDLTFSVP--------------------KGAIVGIIGAN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVC--- 171 G GK+T+ +S + D+G V +A+ + FR + D+ +W + + + Sbjct: 359 GAGKSTLFKMISGAEQPDSGTVELGESVQIASVEQFRDSMNDKNTVWQEISDGQDIMRIN 418 Query: 172 -SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 +EI S A + Q K + L R+H +L AG Sbjct: 419 NTEIPSRAYVGRFNFRGGDQQKIIGTLSGGERNRVHLAKLLQAG 462 >gi|88859172|ref|ZP_01133813.1| putative ABC transporter, ATP-binding protein [Pseudoalteromonas tunicata D2] gi|88819398|gb|EAR29212.1| putative ABC transporter, ATP-binding protein [Pseudoalteromonas tunicata D2] Length = 554 Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 91/232 (39%), Gaps = 41/232 (17%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 + QK S+ L W+R KG + S K + ++ D R E +L I G Sbjct: 263 QARQKSISQELEWVRSNPKGRQAKS---KARMAQFAELQQSDYQKRNETNELFIPP--GP 317 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E VS R Y LI + + K ++ ++G N Sbjct: 318 RLGDKVLE----------VSNLRKSYGNRLLIDNLSFAIPKG---------AIVGIIGAN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV--------- 170 G GK+T+ LS ++ +D+G V+ G+T + A ++Q + + + F Sbjct: 359 GAGKSTLFRMLSGQEQADSGEIVL---GETVQLATVEQFRDNMNENNTVFNEVSDGLDML 415 Query: 171 ---CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 EI S A + Q K V L RLH +L AG G MI Sbjct: 416 KIGNFEIPSRAYVSRFNFKGNDQQKFVKELSGGERNRLHLAKLLKAG-GNMI 466 >gi|226943426|ref|YP_002798499.1| bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein [Azotobacter vinelandii DJ] gi|226718353|gb|ACO77524.1| Adenylylsulfate kinase/ Sulfate Adenylyltransferase subunit 1 [Azotobacter vinelandii DJ] Length = 633 Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 24/45 (53%) Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 F RP IL G++G GK+T+ L +K+ D G V + G R Sbjct: 461 FGQRPATILFTGLSGAGKSTLAYALERKLFDMGRAVYVLDGQNLR 505 >gi|329939125|ref|ZP_08288499.1| gluconokinase [Streptomyces griseoaurantiacus M045] gi|329302010|gb|EGG45903.1| gluconokinase [Streptomyces griseoaurantiacus M045] Length = 172 Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 5/46 (10%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 H PHV++V+GV+G GKTT+ L+ + L V A GD F A Sbjct: 2 HTPHVVVVMGVSGTGKTTIGPLLAAR-----LGVPYAEGDDFHPQA 42 >gi|302348006|ref|YP_003815644.1| Adenylate kinase [Acidilobus saccharovorans 345-15] gi|302328418|gb|ADL18613.1| Adenylate kinase [Acidilobus saccharovorans 345-15] Length = 209 Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 41/126 (32%) Query: 96 LMPLS----KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTF 150 +MP S PF VI+V GV GVGKTTV+ L +K + GL++ +L GD Sbjct: 1 MMPASGVKRNPF--------KVIVVTGVPGVGKTTVLSLLQEKAKERGLRLRVLNFGDFM 52 Query: 151 RSAAI--------DQLKIWADRT-------SADFVCSEIGSDAAALAYEAFKQAQAKKVD 195 A+ DQ++ + R +A + E GSD K+ D Sbjct: 53 LDNAVRKGLIKNRDQIRYLSFREQLELQDIAASSIIEEAGSD-------------LKEGD 99 Query: 196 VLIIDT 201 LI+DT Sbjct: 100 YLIVDT 105 >gi|312197130|ref|YP_004017191.1| sulfate adenylyltransferase large subunit [Frankia sp. EuI1c] gi|311228466|gb|ADP81321.1| sulfate adenylyltransferase, large subunit [Frankia sp. EuI1c] Length = 637 Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 25/43 (58%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 HRP V+ G++G GK+T+ + +++ G+ +L GD R Sbjct: 459 HRPAVVWFTGLSGAGKSTIANRTEQRLHSLGVHTVLLDGDNVR 501 >gi|54307843|ref|YP_128863.1| putative ABC transporter ATP-binding protein [Photobacterium profundum SS9] gi|46912269|emb|CAG19061.1| putative ABC transporter, ATP-binding protein [Photobacterium profundum SS9] Length = 555 Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG + S ++ +S D R E +L I G Sbjct: 264 ARQKTIAKELEWVRQNPKGRQAKSKARMARFEELNTS---DHQKRNETNELFIPP--GER 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K+++ LTK Y RVL D + S P + ++ ++G N Sbjct: 319 LGDKVIDVTNLTKSYG-----DRVLIDD--------LSFSMP-------KGAIVGIIGAN 358 Query: 121 GVGKTTVIGKLS-KKMSDA-----GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ LS + D+ G V LA+ D FR + D ++ + + + Sbjct: 359 GAGKSTLFKMLSGAEQPDSGTIELGTTVSLASVDQFRDSMNDSNTVYQEISEGAEIIRIN 418 Query: 175 GSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 + A AY + F+ + Q K++ L R+H +L AG Sbjct: 419 NYEVPARAYVSRFNFRGSDQQKRIGDLSGGERNRVHLAKLLKAG 462 >gi|86134687|ref|ZP_01053269.1| DNA repair protein RadA/Sms [Polaribacter sp. MED152] gi|85821550|gb|EAQ42697.1| DNA repair protein RadA/Sms [Polaribacter sp. MED152] Length = 453 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 17/102 (16%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 V L+ G G+GK+T++ +++ +S KV+ +G+ +S Q+K+ A+R A Sbjct: 93 VTLLGGEPGIGKSTLLLQVALNISQ---KVLYVSGEESQS----QIKMRAERLEA----- 140 Query: 173 EIGSDAAALA----YEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 + S+ L + FK + + +VL+ID+ LH NSI Sbjct: 141 -VNSNCLILTETNTQQIFKNIEETEPEVLVIDSIQTLHTNSI 181 >gi|213583272|ref|ZP_03365098.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 431 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + ++ R E +L I G Sbjct: 199 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNSVEYQKRNETNELFIPP--GPR 253 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E L K Y RVL D + S P + ++ ++G N Sbjct: 254 LGDKVIEVSNLRKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGPN 293 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 GVGK+T+ +S ++ D+G V LA+ D FR A + +W + S +I Sbjct: 294 GVGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 352 Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 G ++ + AY FK Q K+V L GRLH +L G Sbjct: 353 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 397 >gi|85058378|ref|YP_454080.1| putative ABC transporter ATP-binding protein [Sodalis glossinidius str. 'morsitans'] gi|84778898|dbj|BAE73675.1| putative ABC transporter ATP-binding component [Sodalis glossinidius str. 'morsitans'] Length = 554 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 56/228 (24%), Positives = 89/228 (39%), Gaps = 35/228 (15%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R KG S K K + +D R E +L I G Sbjct: 264 ARRKSIEKELEWVRSNAKGRQS---KGKARLARFEELNNVDYQKRNETSELFIPP--GPR 318 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 + K++E VS R Y LI + L K ++ ++G NG Sbjct: 319 LGDKVLE----------VSQLRKSYGDRLLIDDLSFSLPKG---------AIVGIIGPNG 359 Query: 122 VGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS--- 172 GK+T+ LS K+ D+G V LA+ D FR + + +W + + + Sbjct: 360 AGKSTLFRLLSGKEQPDSGSITLGDTVQLASVDQFRDSMDNSKTVWEEISGGQDIMRIGN 419 Query: 173 -EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 E+ S A + Q K++ L GR+H +L G G M+ Sbjct: 420 FELPSRAYVGRFNFKGVDQGKRIGELSGGERGRVHLAKLLQVG-GNML 466 >gi|88861503|ref|ZP_01136122.1| Cell division transporter substrate-binding protein FtsY [Pseudoalteromonas tunicata D2] gi|88816498|gb|EAR26334.1| Cell division transporter substrate-binding protein FtsY [Pseudoalteromonas tunicata D2] Length = 388 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 38/77 (49%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S+ +L K T + G +I S +++DD + EELE L+ +D+GV K++ L Sbjct: 308 SFFSRLKKSLIKTKQSIGSGFINIFSGKKIDDELFEELETQLLTADLGVDTTLKLIARLT 367 Query: 72 TKRYAKDVSVQRVLYDV 88 K + LYD+ Sbjct: 368 EAADRKQLKDGDALYDL 384 >gi|116662278|ref|YP_829332.1| cobyrinic acid a,c-diamide synthase [Arthrobacter sp. FB24] gi|116613042|gb|ABK05751.1| plasmid segregation oscillating ATPase ParF [Arthrobacter sp. FB24] Length = 210 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 19/100 (19%) Query: 113 VILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA-DRTSAD- 168 +I+VVG GVGK+TV+ L+ +++ G ++ + GD RS A WA DR A Sbjct: 1 MIIVVGSEKGGVGKSTVVTNLAVELAKRGKRIAVVDGDRQRSTA-----RWAVDREEAGH 55 Query: 169 ----FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204 FV ++GS +E ++ DV+++D AG+ Sbjct: 56 EPRIFVVEKLGS-----LHETLRELDT-SYDVVLVDVAGK 89 >gi|113478002|ref|YP_724063.1| cobalamin synthesis protein, P47K [Trichodesmium erythraeum IMS101] gi|110169050|gb|ABG53590.1| cobalamin synthesis protein, P47K [Trichodesmium erythraeum IMS101] Length = 327 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 33/214 (15%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT------S 166 V ++ G G GKTT+I ++ + D + V++ + F ID ++ D S Sbjct: 16 VTIITGFLGSGKTTLINQILQNKQDLKVAVLV---NEFGDLNIDT-QLLTDMNDNMIELS 71 Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226 +C I Y+ + KK+D LII+T G I++ + ++ L LD Sbjct: 72 NGCICCTINEGLVDAVYQVLESD--KKIDYLIIETTGVADPLPIILTFLSTDLKDLTHLD 129 Query: 227 PHAPHSVLQVLDATT-GQNALRQVEMFHAVAGTTGLIMTKMD--------------GTAR 271 SVL ++D + F +A +I+ K+D T R Sbjct: 130 -----SVLTLVDCENFTPDHFDSEAAFKQIAYGDIIILNKIDLASQDKVDYLDSYIKTIR 184 Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 G I IP Y + + I+ L+P+ +D Sbjct: 185 SGARILRSEHSNIPSYLI-LDVNISRLQPYSLED 217 >gi|295702547|ref|YP_003595622.1| putative efflux ABC transporter ATP-binding protein [Bacillus megaterium DSM 319] gi|294800206|gb|ADF37272.1| putative efflux ABC transporter, ATP-binding protein [Bacillus megaterium DSM 319] Length = 518 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 +++++ S+L+ PLSKP N R I +VG NG+GKTT++ Sbjct: 323 KLIFETSDLVIGYGEPLSKPLNLKME-RGQKIALVGANGIGKTTLL 367 >gi|88798982|ref|ZP_01114563.1| flagellar biosynthesis protein [Reinekea sp. MED297] gi|88778209|gb|EAR09403.1| flagellar biosynthesis protein [Reinekea sp. MED297] Length = 439 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 48/203 (23%), Positives = 80/203 (39%), Gaps = 42/203 (20%) Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 V + G G GKTT I KL+ V + + D F+ + LK D DF Sbjct: 237 VFALTGPTGAGKTTTIAKLAAHAVKKQGAESVAVVSMDWFQVGGQEILKSVTDILGVDF- 295 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 Y +Q +K T RL + S+++ LK + Sbjct: 296 ------------YPLTEQDSLQK-------TLQRLSSKSLVLIDTSGSADALKHWNQQTS 336 Query: 231 HSVLQ-------VLDATTGQNALRQV------EMFHAVAGTTGLIMTKMDGTARGGGLIP 277 + L VL AT +A+ Q FH G++++K+D +A GG + Sbjct: 337 NGALANRIQSLLVLPATMTPSAVSQFISQLRGPRFH------GVVLSKVDESASFGGALE 390 Query: 278 IVVTHKIPVYFLGVGEGI-NDLE 299 V+ ++ P++++ G+ I D+E Sbjct: 391 PVLRNRWPLWYITTGQNIPQDIE 413 >gi|330447346|ref|ZP_08310995.1| putative ABC transporter, ATP-binding protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491537|dbj|GAA05492.1| putative ABC transporter, ATP-binding protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 555 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 30/158 (18%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 QK + L W+R+ KG + S ++ S+ D R E +L I G + Sbjct: 266 QKTIEKELEWVRQNPKGRQAKSKARMARFEELQSN---DHQKRNETNELFIPP--GERLG 320 Query: 64 QKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 K++E LTK + RVL D + S P + ++ ++G NG Sbjct: 321 DKVIEVNNLTKSFG-----DRVLIDD--------LSFSIP-------KGAIVGIIGANGA 360 Query: 123 GKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK 159 GK+T+ LS + DAG + GDT + A+++Q + Sbjct: 361 GKSTLFKMLSGTEQPDAG---TIELGDTVKLASVEQFR 395 >gi|317046821|ref|YP_004114469.1| ABC transporter-like protein [Pantoea sp. At-9b] gi|316948438|gb|ADU67913.1| ABC transporter related protein [Pantoea sp. At-9b] Length = 555 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 54/223 (24%), Positives = 88/223 (39%), Gaps = 34/223 (15%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + + R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTEYQKRNETNELFIPP--GAR 318 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 + K++E V+ R Y LI + L K ++ ++G NG Sbjct: 319 LGDKVLE----------VANLRKSYGDRVLIDDLSFSLPKG---------AIVGIIGPNG 359 Query: 122 VGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 GK+T+ +S ++ D+G V LA+ D FR A + +W + + + Sbjct: 360 AGKSTLFRMMSGQEQPDSGTIELGETVKLASVDQFRDAMDNSKTVWEEVSGGQDIMRIGN 419 Query: 176 SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 ++ + AY FK Q K+V L GRLH +L G Sbjct: 420 TEMPSRAYVGRFNFKGTDQGKRVGELSGGERGRLHLAKLLQVG 462 >gi|209523107|ref|ZP_03271663.1| cobalamin synthesis protein P47K [Arthrospira maxima CS-328] gi|209496258|gb|EDZ96557.1| cobalamin synthesis protein P47K [Arthrospira maxima CS-328] Length = 374 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 12/121 (9%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA---DRTSADF 169 V ++ G G GKTT++ + GLK + + F ID I A D T + Sbjct: 22 VTIITGFLGSGKTTLLNYILSNQQ--GLKTAVLVNE-FGEVGIDNELIVATDSDNTMVEL 78 Query: 170 ----VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225 VC I D Y+ ++ + KVD ++++T G + + +G +R + RL Sbjct: 79 SNGCVCCTINEDLVNAVYKVLERPE--KVDYIVVETTGLADPLPVALTFLGTELRDMTRL 136 Query: 226 D 226 D Sbjct: 137 D 137 >gi|299065538|emb|CBJ36709.1| putative ATPase component of ABC transporter [Ralstonia solanacearum CMR15] Length = 545 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 95/228 (41%), Gaps = 44/228 (19%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG + S K + D +SS+ R E +++ I + G Sbjct: 254 ARQKALKKELEWVRQNPKGRQAKS-KARLARFDELSSQEYQK--RNETQEIFIPA--GER 308 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGV 119 + ++VE +TK Y R+L D N F+ I+ ++G Sbjct: 309 LGNEVVEFTNVTKGYG-----DRLLID----------------NLSFTIPAGAIVGIIGP 347 Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 NG GK+T+ L+ K+ DAG + G T + A +DQ + D + F G+D Sbjct: 348 NGAGKSTLFRMLTGKEQPDAG---TVKIGPTVKLAYVDQSRDALDGSKTVFEEISGGADI 404 Query: 179 AALA-YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214 + YE +A Q K V L GRLH L++G Sbjct: 405 LTVGRYETPSRAYIGRFNFKGGDQQKHVGTLSGGERGRLHLAKTLISG 452 >gi|34498815|ref|NP_903030.1| putative ABC transporter ATP-binding protein [Chromobacterium violaceum ATCC 12472] gi|34332876|gb|AAQ61024.2| probable ABC transporter ATP-binding protein [Chromobacterium violaceum ATCC 12472] Length = 555 Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 88/227 (38%), Gaps = 42/227 (18%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG + S K I + R E +++ I Sbjct: 264 ARQKAMKQELEWVRQNPKGRQAKS---KARIARFEELSSFETQKRNETQEIFI------P 314 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGVN 120 VA+++ E++ R+L D N F P I+ ++G N Sbjct: 315 VAERLGNEVIEFEGVSKGFGDRLLID----------------NLSFKAPPGAIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-- 177 G GK+T+ ++ K+ D+G + G T + A ++Q + D F G+D Sbjct: 359 GAGKSTLFKMIAGKEQPDSG---TVKIGQTVQMAFVEQSREGLDGDKTVFEDVAAGADIL 415 Query: 178 ---------AAALAYEAFKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 A L FK A Q KKV +L GRLH L+ G Sbjct: 416 TVGKFEMSSRAYLGRFNFKGADQQKKVGMLSGGERGRLHLAKTLLKG 462 >gi|329725981|gb|EGG62458.1| ABC transporter, ATP-binding protein [Staphylococcus epidermidis VCU144] Length = 644 Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P++ P N + H I ++G NGVGKTT+I +++K G +++ A Q Sbjct: 343 PITLPINLEVFKGDH-IAIIGPNGVGKTTLIKTIAEKQHKLGGQIIFGANLQIGYYDQKQ 401 Query: 158 LKIWADRTSADFVCSE 173 + +++T D+V + Sbjct: 402 AEFKSNKTILDYVWDQ 417 >gi|320333006|ref|YP_004169717.1| plasmid partitioning protein [Deinococcus maricopensis DSM 21211] gi|319754295|gb|ADV66052.1| plasmid partitioning protein [Deinococcus maricopensis DSM 21211] Length = 221 Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 36/142 (25%) Query: 107 FSHRPHVILVVGV----NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162 S++ L++G+ GVGKTT ++ ++D GL+V+LA GD R+A+ W Sbjct: 9 MSNKRSGPLIIGLASLKGGVGKTTSAVHIAAHLADRGLQVLLADGDRIRTAS-----AWG 63 Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL----------- 211 F ++GS AA L A+A D ++ID+ G + +L Sbjct: 64 RGGRLPF---KVGS-AAML-------ARAGDYDAVVIDSRGGPEDTELLDLAENSDQLIL 112 Query: 212 -----MAGIGKMIRVLKRLDPH 228 ++G+ MI+ ++ LD H Sbjct: 113 PTTPDLSGMDGMIQTIEVLDRH 134 >gi|220930936|ref|YP_002507844.1| DNA repair protein RadA [Halothermothrix orenii H 168] gi|219992246|gb|ACL68849.1| DNA repair protein RadA [Halothermothrix orenii H 168] Length = 451 Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 14/93 (15%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172 +IL+ G G+GK+T++ ++++ S+ KV+ +G+ S QLK+ A R A Sbjct: 85 LILLGGAPGIGKSTLVLQMARHFSEKYGKVLYVSGEESAS----QLKMRAGRLGA----- 135 Query: 173 EIGSDAAALAYEAFKQ----AQAKKVDVLIIDT 201 I D L+ F+Q Q +K +++IID+ Sbjct: 136 -INEDLYVLSETNFQQIYGVIQNEKYELIIIDS 167 >gi|257093923|ref|YP_003167564.1| putative ABC transporter ATP-binding protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046447|gb|ACV35635.1| ABC transporter related [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 554 Score = 36.6 bits (83), Expect = 4.9, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 71/171 (41%), Gaps = 27/171 (15%) Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPF-------NWDFSHRPHVIL-V 116 EEL + Y K Q + V E + ++ SK F F+ P I+ + Sbjct: 294 EELSSVEYQKRNETQEIFIPVGERLGSKVIEFRNVSKSFGDRLLIDKLSFNVPPGAIVGI 353 Query: 117 VGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 +G NG GK+T+ L ++ D+G + G T R A +DQ + D + F G Sbjct: 354 IGPNGAGKSTLFRMLIGQEQPDSG---EVEIGSTVRLAYVDQSRDCLDGSKTVFEEVSGG 410 Query: 176 SDAAALA-YEA----------FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 +D + YE FK A Q K+V L GRLH L+AG Sbjct: 411 ADILTVGRYETPSRAYIGRFNFKGADQQKQVGQLSGGERGRLHMAKTLIAG 461 >gi|50122822|ref|YP_051989.1| putative ABC transporter ATP-binding protein [Pectobacterium atrosepticum SCRI1043] gi|49613348|emb|CAG76799.1| putative ABC transporter ATP-binding protein [Pectobacterium atrosepticum SCRI1043] Length = 555 Score = 36.6 bits (83), Expect = 4.9, Method: Compositional matrix adjust. Identities = 54/224 (24%), Positives = 89/224 (39%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S ++ S+ R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQSKGKARLARFEELNSTEYQK---RNETNELFIPP--GAR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K+VE L+K Y +R L D + S P + ++ ++G N Sbjct: 319 LGDKVVEVTNLSKSYG-----ERQLIDG--------LSFSVP-------KGAIVGIIGPN 358 Query: 121 GVGKTTVIGKLSKKMS------DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S + + G V LA+ D FR A + +W + + + Sbjct: 359 GAGKSTLFRMMSGQEQPDDGTIELGETVKLASVDQFRDAMDNSKTVWEEVSGGQDIMRVG 418 Query: 175 GSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 ++ + AY FK Q K+V L GRLH +L G Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462 >gi|291280184|ref|YP_003497019.1| DNA repair protein RadA [Deferribacter desulfuricans SSM1] gi|290754886|dbj|BAI81263.1| DNA repair protein RadA [Deferribacter desulfuricans SSM1] Length = 442 Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 6/93 (6%) Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G+GK+T++ ++S K+S G +V+ +G+ ++ QLK+ DR + + E+ A Sbjct: 95 GIGKSTIMLQISDKLSKHGKRVIYFSGE----ESLTQLKLRCDRLNIN--GDELFFSATN 148 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213 + K+ DV+IID+ ++++ I A Sbjct: 149 NIEDVLDSLSDKRADVIIIDSIQTIYSSEISSA 181 >gi|227114281|ref|ZP_03827937.1| putative ABC transporter ATP-binding protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227327999|ref|ZP_03832023.1| putative ABC transporter ATP-binding protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 555 Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 89/224 (39%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + + R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTEYQKRNETNELFIPP--GAR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K+VE L+K Y +R L D + S P + ++ ++G N Sbjct: 319 LGDKVVEVTNLSKSYG-----ERQLIDG--------LSFSVP-------KGAIVGIIGPN 358 Query: 121 GVGKTTVIGKLSKKMS------DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S + + G V LA+ D FR A + +W + + + Sbjct: 359 GAGKSTLFRMMSGQEQPDGGSIELGETVKLASVDQFRDAMDNSKTVWEEVSGGQDIMRIG 418 Query: 175 GSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 ++ + AY FK Q K+V L GRLH +L G Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462 >gi|146310216|ref|YP_001175290.1| putative ABC transporter ATP-binding protein [Enterobacter sp. 638] gi|145317092|gb|ABP59239.1| ABC transporter related protein [Enterobacter sp. 638] Length = 555 Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 90/224 (40%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S ++ SS R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQSKGKARLARFEELNSSEYQK---RNETNELFIPP--GAR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K+VE L K Y R+L D + S P + ++ ++G N Sbjct: 319 LGDKVVEVNNLRKSYG-----DRLLIDD--------LSFSVP-------KGAIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S ++ D+G V LA+ D FR + + +W + + + Sbjct: 359 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDSMDNSKTVWEEVSGGQDIMRIG 418 Query: 175 GSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 ++ + AY FK Q K+V L GRLH +L G Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462 >gi|325981883|ref|YP_004294285.1| flagellar biosynthetic protein FlhF [Nitrosomonas sp. AL212] gi|325531402|gb|ADZ26123.1| flagellar biosynthetic protein FlhF [Nitrosomonas sp. AL212] Length = 433 Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust. Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 32/194 (16%) Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD------R 164 + ++G GVGKTT KL+ + + +V L D++R +QL+I+ R Sbjct: 202 IYALIGPTGVGKTTTTAKLAARCVIRHGADRVALLTTDSYRIGGHEQLRIYGRLLGIPVR 261 Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV--- 221 T D ++ L + +++IDT G + +L I + Sbjct: 262 TIKD-------TEDLQLTLSELRNKH-----MVLIDTVGMSQRDQMLAEQITMLSNCGTD 309 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281 +KR + +L A + L +V + G G I+TK+D A G + V+ Sbjct: 310 IKR---------MLILSAASNGKTLDEVISAYHKNGIYGCIITKVDEAASLGVALDAVIR 360 Query: 282 HKIPVYFLGVGEGI 295 K+ ++++ G+ + Sbjct: 361 RKLVLHYVANGQKV 374 >gi|298292312|ref|YP_003694251.1| ABC transporter [Starkeya novella DSM 506] gi|296928823|gb|ADH89632.1| ABC transporter related protein [Starkeya novella DSM 506] Length = 551 Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 10/112 (8%) Query: 113 VILVVGVNGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTS 166 ++ V+G NG GKTT+ ++ ++ DAG V L D R A D+ +W + + Sbjct: 347 IVGVIGPNGAGKTTLFRMIAGQEKPDAGTITIGDSVKLGYVDQNRDALDDKKTVWEEISG 406 Query: 167 ADFVC----SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 + V EI S A A+ Q KKV +L R+H IL G Sbjct: 407 GNEVLYLGKREINSRAYCGAFNFKGGDQQKKVGMLSGGERNRVHLARILQQG 458 >gi|237729290|ref|ZP_04559771.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226909019|gb|EEH94937.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 555 Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 94/230 (40%), Gaps = 39/230 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + + R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTEYQKRNETNELFIPP--GAR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K+VE L K Y RVL D + S P + ++ ++G N Sbjct: 319 LGDKVVEVTNLRKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S ++ D+G V LA+ D FR A + +W + S I Sbjct: 359 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMRI 417 Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 G ++ + AY FK Q K+V L GRLH +L G G M+ Sbjct: 418 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466 >gi|225026398|ref|ZP_03715590.1| hypothetical protein EUBHAL_00647 [Eubacterium hallii DSM 3353] gi|224956287|gb|EEG37496.1| hypothetical protein EUBHAL_00647 [Eubacterium hallii DSM 3353] Length = 518 Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 3/58 (5%) Query: 74 RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 RY + + ++L++ +L+ PLSKP ++ + R I ++G NG+GKTT++ L Sbjct: 316 RYGR--TPGKMLFETKKLVIGYDEPLSKPLDF-YMERGQKIALIGTNGIGKTTLLKSL 370 >gi|238794809|ref|ZP_04638411.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia intermedia ATCC 29909] gi|238725889|gb|EEQ17441.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia intermedia ATCC 29909] Length = 548 Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 43/232 (18%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG + K K + ++ R E +L I G Sbjct: 257 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E E L+K Y + LI + L K ++ ++G N Sbjct: 312 LGDKVLEVEHLSKSYGDRL-----------LIDDLTFALPKG---------AIVGIIGPN 351 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFVC 171 G GK+T+ LS ++ D+G ++ GDT + A++DQ + +W + + + Sbjct: 352 GAGKSTLFRMLSGQEQPDSG---TISLGDTVQLASVDQFRDNMDNSKTVWEEVSGGQDIM 408 Query: 172 S----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 EI S A + Q K+V L GR+H +L G G M+ Sbjct: 409 KIGNFEIPSRAYVGRFNFKGIDQGKRVGELSGGERGRIHLAKLLQVG-GNML 459 >gi|219847270|ref|YP_002461703.1| cobalamin synthesis protein P47K [Chloroflexus aggregans DSM 9485] gi|219541529|gb|ACL23267.1| cobalamin synthesis protein P47K [Chloroflexus aggregans DSM 9485] Length = 364 Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 15/132 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169 V ++ G G GKTT++ ++ K +D GL+V + D F S ID QL I + + Sbjct: 10 VTILTGFLGAGKTTLLNRILK--ADHGLRVAVLVND-FGSINIDAQLVIDVESETISLAN 66 Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 VC I D A+ ++ Q + LII+ +G +I + +R RLD Sbjct: 67 GCVCCTIRDDLLQTAFTLLERPQPP--EYLIIEASGVSDPWAIADTFLLPELRTYFRLD- 123 Query: 228 HAPHSVLQVLDA 239 SV+ V+DA Sbjct: 124 ----SVITVIDA 131 >gi|325478424|gb|EGC81538.1| DNA repair protein RadA [Anaerococcus prevotii ACS-065-V-Col13] Length = 455 Score = 36.6 bits (83), Expect = 5.3, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 R V ++ G GK+T++ +LSK +D GLKV+ +G+ S Q+K ADR D Sbjct: 85 RDSVSILTARPGAGKSTLLLQLSKSYADLGLKVIYISGEESES----QIKSRADRIMNDS 140 Query: 170 VCSEI---GSDAAALAYEAFKQAQAKKVDVLIIDT 201 + + +++ LA + K+ A D++ +D+ Sbjct: 141 LPENVWILSTNSMDLAIKEIKKIDA---DIVFLDS 172 >gi|260596409|ref|YP_003208980.1| putative ABC transporter ATP-binding protein [Cronobacter turicensis z3032] gi|260215586|emb|CBA27815.1| Uncharacterized ABC transporter ATP-binding protein yjjK [Cronobacter turicensis z3032] Length = 555 Score = 36.6 bits (83), Expect = 5.3, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 95/230 (41%), Gaps = 39/230 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + + R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTEYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K+VE L K Y RVL D + S P + ++ ++G N Sbjct: 319 LGDKVVEVSNLRKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S ++ D+G V LA+ D FR A + +W + S +I Sbjct: 359 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 417 Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 G ++ + AY FK Q K+V L GRLH +L G G M+ Sbjct: 418 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466 >gi|212634184|ref|YP_002310709.1| putative ABC transporter ATP-binding protein [Shewanella piezotolerans WP3] gi|212555668|gb|ACJ28122.1| ABC transporter, ATP-binding protein [Shewanella piezotolerans WP3] Length = 555 Score = 36.6 bits (83), Expect = 5.3, Method: Compositional matrix adjust. Identities = 53/224 (23%), Positives = 91/224 (40%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG S ++ ++ D R E +L I G Sbjct: 264 ARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTN---DYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E LTK Y RVL D + S P + ++ ++G N Sbjct: 319 LGDKVIEINNLTKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGAN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVC--- 171 G GK+T+ +S + D+G V +A+ + FR + D+ +W + + + Sbjct: 359 GAGKSTLFKMISGAEQPDSGSVELGESVQIASVEQFRDSMNDKNTVWQEISEGQDIMRIN 418 Query: 172 -SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 +EI S A + Q K + L R+H +L AG Sbjct: 419 NTEIPSRAYVGRFNFRGGDQQKIIGTLSGGERNRVHLAKLLQAG 462 >gi|126660901|ref|ZP_01731992.1| hypothetical protein CY0110_21450 [Cyanothece sp. CCY0110] gi|126617798|gb|EAZ88576.1| hypothetical protein CY0110_21450 [Cyanothece sp. CCY0110] Length = 362 Score = 36.6 bits (83), Expect = 5.3, Method: Compositional matrix adjust. Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 16/171 (9%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSA 167 H V ++ G G GKTT++ + + G+K + + F ID +L + + Sbjct: 19 HGLPVTIITGFLGSGKTTLLNHIL--TNQEGIKTAVLVNE-FGEIGIDNELIVTTEDNMV 75 Query: 168 DF----VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 + VC I D Y+ ++ + KVD LI++T G + + +G +R + Sbjct: 76 ELNNGCVCCTINEDLVQAVYKVLERPE--KVDYLIVETTGLADPLPVALTFLGTELRDMT 133 Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHA-VAGTTGLIMTKMDGTARGG 273 RLD S++ ++D L E H+ +A +++ K D G Sbjct: 134 RLD-----SIITMVDCANFSLDLFNSEAAHSQIAYGDIIVLNKTDLVDEGN 179 >gi|14601042|ref|NP_147568.1| hypothetical protein APE_0880 [Aeropyrum pernix K1] gi|5104547|dbj|BAA79862.1| hypothetical protein [Aeropyrum pernix K1] Length = 534 Score = 36.6 bits (83), Expect = 5.4, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 7/100 (7%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIWAD-----RT 165 +VI+++G G GKT V+ + G +GD F+ A A + +KI ++ Sbjct: 52 NVIIILGGRGCGKTLVMRYIKHYFEPEGWDYKYFSGDQFKEADAQELMKIISETRDLLEN 111 Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205 S D+ +G D A EA + ++ L++D AGR+ Sbjct: 112 SEDYKVI-VGIDDVVEASEAIRDTIKNQLVPLVVDYAGRI 150 >gi|312130659|ref|YP_003997999.1| abc transporter related protein [Leadbetterella byssophila DSM 17132] gi|311907205|gb|ADQ17646.1| ABC transporter related protein [Leadbetterella byssophila DSM 17132] Length = 553 Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 34/158 (21%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 QK L W+R KG + S ++++ D REE +L I G + Sbjct: 267 QKTLERELEWVRMSPKGRTAKSKARLNAYDNLLNQ---DAKEREEKLELYIPP--GPRLG 321 Query: 64 QKIVEELLTKRYAKDVSV---QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGV 119 K++E AKD+ + R+LY+ N +FS P I+ ++G Sbjct: 322 NKVIE-------AKDIKMGFGDRLLYE----------------NLNFSLPPAGIVGIIGP 358 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 NG GKTT+ ++ ++ L+ G+T + + +DQ Sbjct: 359 NGAGKTTLFKLITGQLQP--LEGTFEVGETVQLSYVDQ 394 >gi|57867540|ref|YP_189223.1| ABC transporter ATP-binding protein [Staphylococcus epidermidis RP62A] gi|57638198|gb|AAW54986.1| ABC transporter, ATP-binding protein [Staphylococcus epidermidis RP62A] Length = 644 Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P++ P N + H I ++G NGVGKTT+I +++K G +++ A Q Sbjct: 343 PITLPINLEIFKGDH-IAIIGPNGVGKTTLIKTIAEKKHKLGGQIIFGANLQIGYYDQKQ 401 Query: 158 LKIWADRTSADFVCSE 173 + +++T D+V + Sbjct: 402 AEFKSNKTILDYVWDQ 417 >gi|311693379|gb|ADP96252.1| ABC transporter ATP-binding protein-like protein [marine bacterium HP15] Length = 553 Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 97/228 (42%), Gaps = 45/228 (19%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 S+QK + L W+R KG S S K + + +SS+ R E +L I G Sbjct: 264 SHQKAIKQELEWVRSNAKGRQSKS-KARLARFEEMSSQEFQK--RNETNELYIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVG 118 + K++E + ++K + R+LY DVS FS P I+ ++G Sbjct: 319 LGNKVIEVDGISKSFG-----DRMLYEDVS-----------------FSVPPGAIVGIIG 356 Query: 119 VNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLK-------IWADRTSADFV 170 NG GK+T+ ++ D+G + G+T A +DQ++ +W + + + + Sbjct: 357 GNGAGKSTLFKMIAGFDKPDSG---DITVGETVELAYVDQMRDLDGSKTVWEELSDGNDI 413 Query: 171 CSEIGSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 + + AY FK + Q K+V L RLH +L G Sbjct: 414 IKVGNYETPSRAYVGRFNFKGSDQQKRVGDLSGGERNRLHLAKLLKQG 461 >gi|59710930|ref|YP_203706.1| adenylylsulfate kinase [Vibrio fischeri ES114] gi|59479031|gb|AAW84818.1| adenosine 5'-phosphosulfate kinase [Vibrio fischeri ES114] Length = 204 Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 24/43 (55%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 +P V+ G++G GK+T+ G L K+++ G L GD R Sbjct: 30 QKPAVLWFTGLSGAGKSTIAGALESKLAELGYHTYLLDGDNVR 72 >gi|300770602|ref|ZP_07080481.1| DNA repair protein RadA [Sphingobacterium spiritivorum ATCC 33861] gi|300763078|gb|EFK59895.1| DNA repair protein RadA [Sphingobacterium spiritivorum ATCC 33861] Length = 461 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 33/133 (24%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168 ++L+ G G+GK+T++ +L+ +S +K + +G+ + Q+K+ A+R S Sbjct: 97 LVLIGGEPGIGKSTLMLQLA--LSIPQVKTLYISGEE----SEQQIKMRAERLSQSSKAN 150 Query: 169 -FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 ++ +E + FKQ +A + DV++ID+ LH++ I Sbjct: 151 CYILTETSTQ------NIFKQIEAVQPDVIVIDSIQTLHSSQI----------------E 188 Query: 228 HAPHSVLQVLDAT 240 AP SV QV + T Sbjct: 189 SAPGSVSQVRECT 201 >gi|160946559|ref|ZP_02093762.1| hypothetical protein PEPMIC_00517 [Parvimonas micra ATCC 33270] gi|158446943|gb|EDP23938.1| hypothetical protein PEPMIC_00517 [Parvimonas micra ATCC 33270] Length = 515 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 80 SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 S R++++ +L+ P+SKP N R I +VG NG+GKTT++ Sbjct: 319 STSRLIFETEDLVIGYDKPISKPLNLRME-RGDRIAIVGANGLGKTTLVN 367 >gi|91792499|ref|YP_562150.1| putative ABC transporter ATP-binding protein [Shewanella denitrificans OS217] gi|91714501|gb|ABE54427.1| ABC transporter related [Shewanella denitrificans OS217] Length = 555 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 54/224 (24%), Positives = 90/224 (40%), Gaps = 36/224 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK ++ L W+R+ KG S ++ ++ D R E +L I G Sbjct: 264 ARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTN---DYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E LTK Y RVL D + S P + ++ ++G N Sbjct: 319 LGDKVIEVTNLTKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGAN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ +S + D+G V LA+ + FR + D+ +W + + + Sbjct: 359 GAGKSTLFRMISGDEQPDSGSISVGESVQLASVEQFRDSMNDKNTVWQEISGGQDIMRIN 418 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI S A + Q K + L R+H +L AG Sbjct: 419 NMEIPSRAYVGRFNFRGGDQQKIIGTLSGGERNRVHLAKLLQAG 462 >gi|322834499|ref|YP_004214526.1| ABC transporter [Rahnella sp. Y9602] gi|321169700|gb|ADW75399.1| ABC transporter related protein [Rahnella sp. Y9602] Length = 586 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 52/231 (22%), Positives = 92/231 (39%), Gaps = 41/231 (17%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + + R E +L I G Sbjct: 295 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTEYQKRNETNELFIPP--GPR 349 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K+V+ + L+K Y V + + + V + ++ ++G N Sbjct: 350 LGDKVVDVKNLSKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 389 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFV-- 170 G GK+T+ +S + G + L GDT + A++DQ + +W + + + Sbjct: 390 GAGKSTLFRMMSGQEEANGGTIEL--GDTVKLASVDQFRDSMDNSKTVWEEVSGGQDIMR 447 Query: 171 --CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 +E+ S A + Q K+V L GRLH +L G G M+ Sbjct: 448 IGTTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 497 >gi|159118657|ref|XP_001709547.1| ATP-binding protein [Giardia lamblia ATCC 50803] gi|157437664|gb|EDO81873.1| ATP-binding protein [Giardia lamblia ATCC 50803] Length = 369 Score = 36.6 bits (83), Expect = 5.8, Method: Compositional matrix adjust. Identities = 14/28 (50%), Positives = 22/28 (78%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMS 136 HRP V+LV+G+ G GKTT I +L+ +++ Sbjct: 24 HRPPVLLVIGMAGAGKTTFIQRLAAELN 51 >gi|329116697|ref|ZP_08245414.1| ABC transporter, ATP-binding protein [Streptococcus parauberis NCFD 2020] gi|326907102|gb|EGE54016.1| ABC transporter, ATP-binding protein [Streptococcus parauberis NCFD 2020] Length = 625 Score = 36.6 bits (83), Expect = 5.8, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 16/98 (16%) Query: 69 ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 +LL ++ +K V + V D+S LIH DF + ++GVNG GKTT++ Sbjct: 3 DLLVEKLSKTVGDKTVFKDISFLIH------------DFDR----VGIIGVNGTGKTTLL 46 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 LS+K+ G + + + A + Q ++ D+T+ Sbjct: 47 DVLSEKIGFDGDISPITKANGYNIAYLTQDPVFDDQTT 84 >gi|29833171|ref|NP_827805.1| gluconokinase [Streptomyces avermitilis MA-4680] gi|29610293|dbj|BAC74340.1| putative gluconokinase [Streptomyces avermitilis MA-4680] Length = 178 Score = 36.2 bits (82), Expect = 5.9, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 5/46 (10%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 H PHV++V+GV G GKTT+ L+ + L V A GD F A Sbjct: 5 HTPHVVVVMGVAGTGKTTIGPLLAAR-----LGVPYAEGDDFHPPA 45 >gi|227539098|ref|ZP_03969147.1| DNA repair protein RadA [Sphingobacterium spiritivorum ATCC 33300] gi|227241048|gb|EEI91063.1| DNA repair protein RadA [Sphingobacterium spiritivorum ATCC 33300] Length = 461 Score = 36.2 bits (82), Expect = 6.0, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 33/133 (24%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168 ++L+ G G+GK+T++ +L+ +S +K + +G+ + Q+K+ A+R S Sbjct: 97 LVLIGGEPGIGKSTLMLQLA--LSIPQVKTLYISGEE----SEQQIKMRAERLSQSSKAN 150 Query: 169 -FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 ++ +E + FKQ +A + DV++ID+ LH++ I Sbjct: 151 CYILTETSTQ------NIFKQIEAVQPDVIVIDSIQTLHSSQI----------------E 188 Query: 228 HAPHSVLQVLDAT 240 AP SV QV + T Sbjct: 189 SAPGSVSQVRECT 201 >gi|224502920|ref|ZP_03671227.1| arsenical pump-driving ATPase [Listeria monocytogenes FSL R2-561] Length = 574 Score = 36.2 bits (82), Expect = 6.0, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 24/36 (66%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 +I +G GVGKTTV K++KK++ G KV LA D Sbjct: 327 IIFTMGKGGVGKTTVAIKIAKKLAQEGKKVHLATTD 362 >gi|21220175|ref|NP_625954.1| gluconokinase [Streptomyces coelicolor A3(2)] gi|256788713|ref|ZP_05527144.1| gluconokinase [Streptomyces lividans TK24] gi|289772607|ref|ZP_06531985.1| shikimate kinase [Streptomyces lividans TK24] gi|13620205|emb|CAC36382.1| putative gluconokinase [Streptomyces coelicolor A3(2)] gi|289702806|gb|EFD70235.1| shikimate kinase [Streptomyces lividans TK24] Length = 175 Score = 36.2 bits (82), Expect = 6.0, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 5/46 (10%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 H PHV++V+GV G GKTT+ L+ + L V A GD F A Sbjct: 5 HTPHVVVVMGVAGTGKTTIGPLLAAR-----LGVPYAEGDDFHPPA 45 >gi|288937255|ref|YP_003441314.1| ABC transporter [Klebsiella variicola At-22] gi|288891964|gb|ADC60282.1| ABC transporter related protein [Klebsiella variicola At-22] Length = 555 Score = 36.2 bits (82), Expect = 6.0, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + ++ R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNVEYQKRNETNELFIPP--GAR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E L K Y RVL D + S P + ++ ++G N Sbjct: 319 LGDKVLEVSHLRKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S ++ D+G V LA+ D FR A + +W + S +I Sbjct: 359 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 417 Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 G ++ + AY FK Q K+V L GRLH +L G Sbjct: 418 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462 >gi|108810482|ref|YP_646249.1| ATPase [Yersinia pestis Nepal516] gi|229840330|ref|ZP_04460489.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842410|ref|ZP_04462565.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis biovar Orientalis str. India 195] gi|229900670|ref|ZP_04515794.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis Nepal516] gi|108774130|gb|ABG16649.1| ATPase [Yersinia pestis Nepal516] gi|229682009|gb|EEO78101.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis Nepal516] gi|229690720|gb|EEO82774.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis biovar Orientalis str. India 195] gi|229696696|gb|EEO86743.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis biovar Orientalis str. PEXU2] gi|320016991|gb|ADW00563.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 381 Score = 36.2 bits (82), Expect = 6.0, Method: Compositional matrix adjust. Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG + K K + ++ R E +L I G Sbjct: 90 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 144 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E E L+K Y + LI + L K ++ ++G N Sbjct: 145 LGDKVLEVEHLSKSYGDRL-----------LIDDLTFALPKG---------AIVGIIGPN 184 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G V LA+ D FR D +W + + + Sbjct: 185 GAGKSTLFRMLSGQEQPDSGTISLGDTVQLASVDQFRDNMDDSKTVWEEVSGGQDIMKIG 244 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 E+ S A + Q K++ L GR+H +L G G M+ Sbjct: 245 NFELPSRAYVGRFNFKGVDQGKRIGELSGGERGRIHLAKLLQVG-GNML 292 >gi|47459449|ref|YP_016311.1| putative ATPase/GTPase [Mycoplasma mobile 163K] gi|47458779|gb|AAT28100.1| putative ATPase/GTPase [Mycoplasma mobile 163K] Length = 632 Score = 36.2 bits (82), Expect = 6.1, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 22/116 (18%) Query: 96 LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM---SDAGLKVMLAAGDTFRS 152 L + F F + HV+ + G G GKT + KL + + +K+ML G FR+ Sbjct: 243 FYSLKETFLKSFETKKHVVFISGAAGSGKTVIAFKLLGYIMSNHNKSVKLML-PGPEFRA 301 Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 AA QLK + +F+ G+D A K DV+IID A + +N Sbjct: 302 AAKSQLK---NNNLVEFIG---GADMHA------------KHDVVIIDEAHKARSN 339 >gi|260775134|ref|ZP_05884032.1| ABC transporter ATP-binding protein [Vibrio coralliilyticus ATCC BAA-450] gi|260608835|gb|EEX34997.1| ABC transporter ATP-binding protein [Vibrio coralliilyticus ATCC BAA-450] Length = 555 Score = 36.2 bits (82), Expect = 6.1, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 30/178 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L W+R+ KG + S ++ S D R E +L I G Sbjct: 264 ARQKTIEKELEWVRQNPKGRQAKSKARMARFEELQSG---DHQKRNETNELFIPP--GER 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E LTK + RVL D + S P + ++ ++G N Sbjct: 319 LGDKVIEVNNLTKSFDG-----RVLIDD--------LSFSMP-------KGAIVGIIGAN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 G GK+T+ LS + D+G + GDT + A++DQ + D + F G+D Sbjct: 359 GAGKSTLFKMLSGTEQPDSG---SIDMGDTVKLASVDQFRDSMDDSKTVFQEISEGAD 413 >gi|159044740|ref|YP_001533534.1| putative ABC transporter ATP-binding protein [Dinoroseobacter shibae DFL 12] gi|157912500|gb|ABV93933.1| hypothetical protein Dshi_2197 [Dinoroseobacter shibae DFL 12] Length = 551 Score = 36.2 bits (82), Expect = 6.2, Method: Compositional matrix adjust. Identities = 54/228 (23%), Positives = 89/228 (39%), Gaps = 44/228 (19%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + QK + L WIR K + ++ RE++ I G Sbjct: 260 AKQKTLARELEWIRAGAKARQAKQKARINAYEELAGQSE-----REKVGKAQIIIPNGPR 314 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGV 119 + K++E E LTK Y + ++ N FS P I+ V+G Sbjct: 315 LGSKVIEVENLTKAYGDKLLIE---------------------NLSFSLPPGGIVGVIGP 353 Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFV 170 NG GK+T+ L+ ++ D G L+ GDT + A +DQ + +W + + + Sbjct: 354 NGAGKSTLFRMLTGQEQPDGG---TLSYGDTVQLAYVDQSRDTLDPAATVWEEISGGGEI 410 Query: 171 C----SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 ++I S A A+ Q KKV +L R+H +L +G Sbjct: 411 IELGDAQINSRAYCGAFNFKGGDQQKKVGLLSGGERNRVHMAKLLKSG 458 >gi|197334231|ref|YP_002155081.1| adenylylsulfate kinase [Vibrio fischeri MJ11] gi|197315721|gb|ACH65168.1| adenylylsulfate kinase [Vibrio fischeri MJ11] Length = 204 Score = 36.2 bits (82), Expect = 6.2, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 24/43 (55%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 +P V+ G++G GK+T+ G L K+++ G L GD R Sbjct: 30 QKPAVLWFTGLSGAGKSTIAGALESKLAELGYHTYLLDGDNVR 72 >gi|206578916|ref|YP_002240559.1| ABC transporter, ATP-binding protein [Klebsiella pneumoniae 342] gi|290512659|ref|ZP_06552025.1| ABC transporter ATP-binding protein yjjK [Klebsiella sp. 1_1_55] gi|206567974|gb|ACI09750.1| ABC transporter, ATP-binding protein [Klebsiella pneumoniae 342] gi|289775000|gb|EFD83002.1| ABC transporter ATP-binding protein yjjK [Klebsiella sp. 1_1_55] Length = 555 Score = 36.2 bits (82), Expect = 6.3, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + ++ R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNVEYQKRNETNELFIPP--GAR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E L K Y RVL D + S P + ++ ++G N Sbjct: 319 LGDKVLEVSHLRKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S ++ D+G V LA+ D FR A + +W + S +I Sbjct: 359 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 417 Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 G ++ + AY FK Q K+V L GRLH +L G Sbjct: 418 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462 >gi|51594941|ref|YP_069132.1| ABC transporter ATP-binding protein [Yersinia pseudotuberculosis IP 32953] gi|153949023|ref|YP_001402444.1| ABC transporter ATP-binding protein [Yersinia pseudotuberculosis IP 31758] gi|170025833|ref|YP_001722338.1| putative ABC transporter ATP-binding protein [Yersinia pseudotuberculosis YPIII] gi|186893941|ref|YP_001871053.1| putative ABC transporter ATP-binding protein [Yersinia pseudotuberculosis PB1/+] gi|51588223|emb|CAH19830.1| putative ABC drug efflux transporter, fused ATP binding domains [Yersinia pseudotuberculosis IP 32953] gi|152960518|gb|ABS47979.1| ABC transporter, ATP-binding protein [Yersinia pseudotuberculosis IP 31758] gi|169752367|gb|ACA69885.1| ABC transporter related [Yersinia pseudotuberculosis YPIII] gi|186696967|gb|ACC87596.1| ABC transporter related [Yersinia pseudotuberculosis PB1/+] Length = 555 Score = 36.2 bits (82), Expect = 6.3, Method: Compositional matrix adjust. Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG + K K + ++ R E +L I G Sbjct: 264 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E E L+K Y + LI + L K ++ ++G N Sbjct: 319 LGDKVLEVEHLSKSYGDRL-----------LIDDLTFALPKG---------AIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G V LA+ D FR D +W + + + Sbjct: 359 GAGKSTLFRMLSGQEQPDSGTISLGDTVQLASVDQFRDNMDDSKTVWEEVSGGQDIMKIG 418 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 E+ S A + Q K++ L GR+H +L G G M+ Sbjct: 419 NFELPSRAYVGRFNFKGVDQGKRIGELSGGERGRIHLAKLLQVG-GNML 466 >gi|283788567|ref|YP_003368432.1| ABC transporter ATP-binding protein [Citrobacter rodentium ICC168] gi|282952021|emb|CBG91750.1| ABC transporter, ATP-binding protein [Citrobacter rodentium ICC168] Length = 555 Score = 36.2 bits (82), Expect = 6.4, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 93/229 (40%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + + R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTEYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 + K+VE VS R Y LI + + K ++ ++G NG Sbjct: 319 LGDKVVE----------VSNLRKSYGDRLLIDDLSFSVPKG---------AIVGIIGPNG 359 Query: 122 VGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 GK+T+ +S ++ D+G V LA+ D FR A + +W + S +IG Sbjct: 360 AGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKIG 418 Query: 176 -SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 ++ + AY FK Q K+V L GRLH +L G G M+ Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466 >gi|157376092|ref|YP_001474692.1| adenylyl-sulfate kinase [Shewanella sediminis HAW-EB3] gi|157318466|gb|ABV37564.1| Adenylyl-sulfate kinase [Shewanella sediminis HAW-EB3] Length = 228 Score = 36.2 bits (82), Expect = 6.4, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 5/124 (4%) Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW-ADRTSA 167 H P V+ G++G GK+TV + K + D G K + GD R L ADR Sbjct: 47 HAPAVLWFTGLSGSGKSTVANAVDKMLHDLGCKTYVLDGDNVRHGLNGDLGFSDADRVEN 106 Query: 168 DFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS-ILMAGIGKMIRVLK 223 E+ DA L AF + + + + H+NS + I I V + Sbjct: 107 IRRIGEVSKLFVDAGLLVSTAFISPFVEDRESVRAQLSDSQHSNSQFIEVYIDTPIEVCE 166 Query: 224 RLDP 227 + DP Sbjct: 167 QRDP 170 >gi|219667957|ref|YP_002458392.1| cobalamin synthesis protein P47K [Desulfitobacterium hafniense DCB-2] gi|219538217|gb|ACL19956.1| cobalamin synthesis protein P47K [Desulfitobacterium hafniense DCB-2] Length = 363 Score = 36.2 bits (82), Expect = 6.4, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 10/99 (10%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 + +ILV G GVGKTT++G+ ++++S G KV L D S +D ++ ++T + Sbjct: 2 KTKLILVGGFLGVGKTTLLGEAARRLSQTGRKVGLITNDQ-ASELVD--TVYLEQTGTEV 58 Query: 170 VCSEIGSDAAALAYEAFKQA-----QAKKVDVLIIDTAG 203 SE+ + F +A K D++I + G Sbjct: 59 --SEVSGSCFCCNFPGFMEAIDHVNAHKPADIIIAEPVG 95 >gi|251788164|ref|YP_003002885.1| putative ABC transporter ATP-binding protein [Dickeya zeae Ech1591] gi|247536785|gb|ACT05406.1| ABC transporter related [Dickeya zeae Ech1591] Length = 554 Score = 36.2 bits (82), Expect = 6.5, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 96/230 (41%), Gaps = 39/230 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG + K + D ++S ++ R E +L I G Sbjct: 264 ARRKSIEKELEWVRQNPKGRQAKG-KARLARFDELNS--VEYQKRNETSELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K+++ E LTK Y RVL D N FS + ++ ++G Sbjct: 319 LGDKVLDVENLTKSYG-----DRVLID----------------NLSFSIPKGAIVGIIGP 357 Query: 120 NGVGKTTVIGKL-SKKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172 NG GK+T+ L S++ D+G V LA+ D FR + +W + + + Sbjct: 358 NGAGKSTLFRMLSSQEQPDSGAISLGETVQLASVDQFRDKMDNSKTVWEEISGGQDIMRI 417 Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 E+ S A + Q K++ L GR+H +L G G M+ Sbjct: 418 GNFELPSRAYVGRFNFKGVDQGKRIGELSGGERGRVHLAKLLQVG-GNML 466 >gi|205373670|ref|ZP_03226473.1| YfmM [Bacillus coahuilensis m4-4] Length = 518 Score = 36.2 bits (82), Expect = 6.6, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +V+++ +L+ PLS+P N R I +VG NG+GKTT++ L Sbjct: 323 KVIFETKDLVIGYDQPLSQPLNLRME-RGQKIALVGANGIGKTTLLKSL 370 >gi|306836412|ref|ZP_07469389.1| cell division protein FtsY [Corynebacterium accolens ATCC 49726] gi|304567693|gb|EFM43281.1| cell division protein FtsY [Corynebacterium accolens ATCC 49726] Length = 551 Score = 36.2 bits (82), Expect = 6.7, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 11/127 (8%) Query: 30 EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 +G+ I+S+ LD+ EE+ED LI +D+G K+ + L K + VS + + Sbjct: 429 QGLMGILSAGDLDEDAWEEIEDTLIMADLGTKSTMKVTDSLRDKIAERGVSSEE---EAR 485 Query: 90 ELIHKMLMPLSKPFNWDFSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142 ++ + L+ P D S R P +++VVGVNG GKTT GKL++ + V Sbjct: 486 AMLRECLIEACHP-EMDRSIRAMPNDGKPAIVMVVGVNGTGKTTTTGKLARVLVSMDHSV 544 Query: 143 MLAAGDT 149 +L A DT Sbjct: 545 LLGAADT 551 >gi|262044965|ref|ZP_06018007.1| ABC superfamily ATP binding cassette transporter [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037692|gb|EEW38921.1| ABC superfamily ATP binding cassette transporter [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 548 Score = 36.2 bits (82), Expect = 6.7, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + ++ R E +L I G Sbjct: 257 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNVEYQKRNETNELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E L K Y V + + + V + ++ ++G N Sbjct: 312 LGDKVLEVSHLCKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 351 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S ++ D+G V LA+ D FR A + +W + S +I Sbjct: 352 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 410 Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 G ++ + AY FK Q K+V L GRLH +L G Sbjct: 411 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 455 >gi|218703140|ref|YP_002410769.1| putative ABC transporter ATP-binding protein [Escherichia coli IAI39] gi|218373126|emb|CAR21020.1| fused putative transporter subunits of ABC superfamily: ATP-binding components [Escherichia coli IAI39] Length = 555 Score = 36.2 bits (82), Expect = 6.7, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 94/229 (41%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ TKG S ++ S+ R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGTKGRQSKGKARLARFEELNSTEYQK---RNETNELFIPP--GPR 318 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 + K++E VS R Y LI + + K ++ ++G NG Sbjct: 319 LGDKVLE----------VSNLRKSYGDRLLIDDLSFSIPKG---------AIVGIIGPNG 359 Query: 122 VGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 GK+T+ +S ++ D+G V LA+ D FR + + +W + S +IG Sbjct: 360 AGKSTLFSMISGQEQPDSGTITLGETVKLASVDQFRDSMDNSKTVW-EEVSGGLDIMKIG 418 Query: 176 -SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 ++ + AY FK Q K+V L GRLH +L G G M+ Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466 >gi|29829443|ref|NP_824077.1| LuxR family transcriptional regulator [Streptomyces avermitilis MA-4680] gi|15823973|dbj|BAB69190.1| luxR-family transcriptional regulatory protein [Streptomyces avermitilis] gi|29606551|dbj|BAC70612.1| LuxR-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 942 Score = 36.2 bits (82), Expect = 6.7, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 40/215 (18%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA----IDQLKIWADRTSAD 168 V+LV GVG+T ++ +K +++G +V AAG + + A + QL A Sbjct: 12 VVLVNAGPGVGRTALLDAFLRKATESGARVCAAAGSSAETEAEFGVVGQLFPPTGPLGAG 71 Query: 169 F-VCSEIGSDAAALA------YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221 F + IGS A ++A Q ++ V+ +D A +L + + L + +R Sbjct: 72 FRLARAIGSRDAGPGLDADRLFDALCQELRRRPTVIAVDDA-QLADAASL-----RFLRY 125 Query: 222 LKRLDPHAPHSVLQVLDATTGQNALR---QVEMF-HAVAGTTGLIMTKMDGTARGGGLIP 277 L R AP V+ VL TG +AL Q E+ H GL+ DG + Sbjct: 126 LVRRLRTAP--VMMVLTEPTGPDALPPSFQAELLRHPQCRRLGLLPLSRDGVTQ------ 177 Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 VV+ ++ +D P +A DF A+ G Sbjct: 178 -VVSAQV----------GSDRVPRLAADFHAISGG 201 >gi|291563822|emb|CBL42638.1| ATPase components of ABC transporters with duplicated ATPase domains [butyrate-producing bacterium SS3/4] Length = 517 Score = 36.2 bits (82), Expect = 6.7, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 83 RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 +++++ +L+ PLSKP N+ R I V+G NG+GKTT + Sbjct: 323 KLIFETRDLVIGYDEPLSKPLNF-LMERGEKIAVIGANGIGKTTFL 367 >gi|288549364|ref|ZP_05966866.2| hypothetical protein ENTCAN_05213 [Enterobacter cancerogenus ATCC 35316] gi|288318839|gb|EFC57777.1| ABC transporter, ATP-binding protein YjiK [Enterobacter cancerogenus ATCC 35316] Length = 548 Score = 36.2 bits (82), Expect = 6.8, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 91/225 (40%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + + R E +L I G Sbjct: 257 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTEYQKRNETNELFIPP--GAR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K+VE L K Y RVL D + S P + ++ ++G N Sbjct: 312 LGDKVVEVSNLRKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGPN 351 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S ++ D+G V LA+ D FR A + +W + S I Sbjct: 352 GAGKSTLFRMMSGQEQPDSGSITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMRI 410 Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 G ++ + AY FK Q K+V L GRLH +L G Sbjct: 411 GNTEMPSRAYVGRFNFKGTDQGKRVGELSGGERGRLHLAKLLQVG 455 >gi|170079656|ref|YP_001736290.1| DNA helicase, TrwC and TraI like protein [Synechococcus sp. PCC 7002] gi|169887325|gb|ACB01034.1| DNA helicase, TrwC and TraI like protein [Synechococcus sp. PCC 7002] Length = 1249 Score = 36.2 bits (82), Expect = 6.8, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 27/170 (15%) Query: 37 SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96 + R + G+R E+ LIR + +A+ Q A + +L ++L + Sbjct: 344 NPRLIRRGLRLATEESLIREKMTIALMQ-----------AGQGKLAPMLTTQTQLSEVLT 392 Query: 97 MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156 + N S + V+ VGV G GKT + L K G++V A D Sbjct: 393 TSQTDAVNHALSSQDRVVGWVGVAGAGKTFTLNTLVKIAQAQGIEVSGFAPDA------- 445 Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ-AKKVDVLIIDTAGRL 205 +SA+ + E+G +AY +Q + ++K + +ID AG+L Sbjct: 446 --------SSAEVLGDEVGIGTDTVAYHLLQQHEPSQKRQLWLIDEAGKL 487 >gi|150017889|ref|YP_001310143.1| ABC transporter [Clostridium beijerinckii NCIMB 8052] gi|149904354|gb|ABR35187.1| ABC transporter related [Clostridium beijerinckii NCIMB 8052] Length = 517 Score = 36.2 bits (82), Expect = 6.8, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 + ++ +VS LI PLSKP N R I V G NG+GKTT++ L Sbjct: 321 ESIILEVSNLIIGYNRPLSKPLNLKMK-RGQKIAVTGANGLGKTTLLKTL 369 >gi|332158693|ref|YP_004423972.1| adenylylsulfate kinase [Pyrococcus sp. NA2] gi|331034156|gb|AEC51968.1| adenylylsulfate kinase [Pyrococcus sp. NA2] Length = 178 Score = 36.2 bits (82), Expect = 6.9, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 26/45 (57%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 I + G +G GKTT+ KL+KK+ + G +V + GDT R L Sbjct: 10 IWLTGPSGAGKTTLAVKLAKKLREMGYRVEILDGDTIRKTLYPNL 54 >gi|332994106|gb|AEF04161.1| flagellar biosynthesis protein [Alteromonas sp. SN2] Length = 463 Score = 36.2 bits (82), Expect = 7.0, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 21/153 (13%) Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207 DT+R AA +QL + ++ + + L + Q + +++IDTAG Sbjct: 287 DTYRIAAFEQLATYGKIIGCTVRKAQSSEELSDLLF------QLRHKRLVLIDTAGFSQR 340 Query: 208 NSILMAGI-----GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262 +S L+ I G+M V K L V A T AL+++ + +G I Sbjct: 341 DSRLIKQINQFDNGQMQPVKKYL----------VAQANTQYAALQRIIDAYEGVELSGCI 390 Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295 TK+D G ++ V +++PV ++ G+ + Sbjct: 391 FTKLDECYSLGEVLSAAVEYQLPVSYVTDGQKV 423 >gi|45443468|ref|NP_995007.1| putative ABC transporter ATP-binding protein [Yersinia pestis biovar Microtus str. 91001] gi|145600442|ref|YP_001164518.1| putative ABC transporter ATP-binding protein [Yersinia pestis Pestoides F] gi|162419068|ref|YP_001605397.1| putative ABC transporter ATP-binding protein [Yersinia pestis Angola] gi|229836973|ref|ZP_04457138.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis Pestoides A] gi|45438337|gb|AAS63884.1| ATPase components of ABC transporters with duplicated ATPase domains [Yersinia pestis biovar Microtus str. 91001] gi|145212138|gb|ABP41545.1| ATPase [Yersinia pestis Pestoides F] gi|162351883|gb|ABX85831.1| ABC transporter, ATP-binding protein [Yersinia pestis Angola] gi|229705916|gb|EEO91925.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis Pestoides A] Length = 555 Score = 36.2 bits (82), Expect = 7.0, Method: Compositional matrix adjust. Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG + K K + ++ R E +L I G Sbjct: 264 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E E L+K Y + LI + L K ++ ++G N Sbjct: 319 LGDKVLEVEHLSKSYGDRL-----------LIDDLTFALPKG---------AIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G V LA+ D FR D +W + + + Sbjct: 359 GAGKSTLFRMLSGQEQPDSGTISLGDTVQLASVDQFRDNMDDSKTVWEEVSGGQDIMKIG 418 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 E+ S A + Q K++ L GR+H +L G G M+ Sbjct: 419 NFELPSRAYVGRFNFKGVDQGKRIGELSGGERGRIHLAKLLQVG-GNML 466 >gi|319404038|emb|CBI77626.1| DNA repair protein [Bartonella rochalimae ATCC BAA-1498] Length = 471 Score = 36.2 bits (82), Expect = 7.1, Method: Compositional matrix adjust. Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 5/99 (5%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 R +L+ G G+GK+T++ + + +S G V+ +G+ AI Q+++ A R +A Sbjct: 88 RGSALLIAGDPGIGKSTLLTQTAAALSQKGYNVIYVSGE----EAITQIRLRAQRLNATN 143 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 ++ ++ A KK+D++I+D+ L +N Sbjct: 144 TAVQLAAETNVEDILATLNTH-KKLDMVIVDSIQTLWSN 181 >gi|325000894|ref|ZP_08122006.1| cobalamin synthesis protein [Pseudonocardia sp. P1] Length = 336 Score = 36.2 bits (82), Expect = 7.2, Method: Compositional matrix adjust. Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 9/96 (9%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA----- 167 V+++ G G GKTT++ L DA + V++ + F S ID +++ Sbjct: 7 VVVLAGFLGAGKTTLLNHLLATGGDARIGVVV---NDFGSVGIDAMRLAGQAGEVVGLGN 63 Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 +C E+G D A E + + ++DV++I+ +G Sbjct: 64 GCLCCEVGEDGVAGVLENLTR-RRDEIDVIVIEASG 98 >gi|294502543|ref|YP_003566605.1| ATPase [Yersinia pestis Z176003] gi|262360573|gb|ACY57294.1| ATPase [Yersinia pestis D106004] gi|262364519|gb|ACY61076.1| ATPase [Yersinia pestis D182038] gi|294353002|gb|ADE63343.1| ATPase [Yersinia pestis Z176003] Length = 343 Score = 36.2 bits (82), Expect = 7.5, Method: Compositional matrix adjust. Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG + K K + ++ R E +L I G Sbjct: 52 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 106 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E E L+K Y + LI + L K ++ ++G N Sbjct: 107 LGDKVLEVEHLSKSYGDRL-----------LIDDLTFALPKG---------AIVGIIGPN 146 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G V LA+ D FR D +W + + + Sbjct: 147 GAGKSTLFRMLSGQEQPDSGTISLGDTVQLASVDQFRDNMDDSKTVWEEVSGGQDIMKIG 206 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 E+ S A + Q K++ L GR+H +L G G M+ Sbjct: 207 NFELPSRAYVGRFNFKGVDQGKRIGELSGGERGRIHLAKLLQVG-GNML 254 >gi|126464405|ref|YP_001045518.1| LAO/AO transport system ATPase [Rhodobacter sphaeroides ATCC 17029] gi|126106216|gb|ABN78746.1| LAO/AO transport system ATPase [Rhodobacter sphaeroides ATCC 17029] Length = 323 Score = 36.2 bits (82), Expect = 7.5, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 26/37 (70%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 HV+ + GV G GK+T++ KL +K+ DAG +V + A D Sbjct: 52 HVVGITGVPGSGKSTMVSKLVRKLLDAGERVAVVAID 88 >gi|307132673|ref|YP_003884689.1| ABC transporter ATP-binding protein yjjK [Dickeya dadantii 3937] gi|306530202|gb|ADN00133.1| ABC transporter ATP-binding protein yjjK [Dickeya dadantii 3937] Length = 554 Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust. Identities = 56/233 (24%), Positives = 100/233 (42%), Gaps = 45/233 (19%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG + K + D ++S ++ R E +L I G Sbjct: 264 ARRKSIEKELEWVRQNPKGRQAKG-KARLARFDELNS--VEYQKRNETSELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119 + K++E + LTK Y RVL D N F+ + ++ ++G Sbjct: 319 LGDKVLEVQNLTKSYG-----DRVLID----------------NLSFAIPKGSIVGIIGP 357 Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFV 170 NG GK+T+ LS ++ D+G ++ G+T + A++DQ + +W + + + Sbjct: 358 NGAGKSTLFRMLSAQEQPDSG---TISLGETVQLASVDQFRDKMDGSKTVWEEVSGGQDI 414 Query: 171 CS----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 EI S A + Q K++ L GR+H +L G G M+ Sbjct: 415 MRIGNFEIPSRAYVGRFNFKGVDQGKRIGELSGGERGRVHLAKLLQVG-GNML 466 >gi|257416619|ref|ZP_05593613.1| arsenical pump-driving ATPase ArsA [Enterococcus faecalis AR01/DG] gi|257158447|gb|EEU88407.1| arsenical pump-driving ATPase ArsA [Enterococcus faecalis ARO1/DG] Length = 580 Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 13/94 (13%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 E + +++ P + P D + H VI +G GVGKTT+ ++ ++D G KV L Sbjct: 299 EFLTEIVTPRAFPRLKDIVNELHQSGKKVIFTMGKGGVGKTTIAAAIATGLADKGKKVHL 358 Query: 145 AAGDT-----FRSAAIDQLKIW---ADRTSADFV 170 A D F + DQ+K+ D+ AD+ Sbjct: 359 ATTDPAAHLQFVISESDQIKVSHIDEDKELADYT 392 >gi|301299290|ref|ZP_07205576.1| SRP54-type protein, helical bundle domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300853134|gb|EFK80732.1| SRP54-type protein, helical bundle domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 138 Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust. Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 6/96 (6%) Query: 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPL 99 V E+ L+ +D+ V + V+ + ++ +V Q+++ V+E + K++ Sbjct: 31 VMREIRLALLEADVNFKVVKDFVKTVRSRAIGAEVLESLTPAQQIVKIVNEELVKVMGEE 90 Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 + P N + P +I++VG+ G GKTT KL+ K+ Sbjct: 91 AAPLNKS-AKIPTIIMMVGLQGAGKTTTASKLANKV 125 >gi|303327220|ref|ZP_07357662.1| ABC transporter, ATP-binding protein [Desulfovibrio sp. 3_1_syn3] gi|302863208|gb|EFL86140.1| ABC transporter, ATP-binding protein [Desulfovibrio sp. 3_1_syn3] Length = 560 Score = 35.8 bits (81), Expect = 7.7, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 89/230 (38%), Gaps = 52/230 (22%) Query: 4 QKVASESLSWIRKLTKGF---ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 QK S L WIR KG + E + S +R D L I G Sbjct: 271 QKTLSRELEWIRMSPKGRHAKGKARINAYEAMLSHESEKRAPD--------LEIYIPPGP 322 Query: 61 AVAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117 + + ++E KDVS R+L D +E L+P ++ ++ Sbjct: 323 RLGKSVIE-------LKDVSKSMGDRLLMDKAE----ALIPAGA-----------IVGII 360 Query: 118 GVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAAIDQLK--IWADRTSADFVCS-- 172 G NG GKTT+ L ++ D+G L+ G+T A +DQ + + +T + + Sbjct: 361 GPNGAGKTTLFKMLVGQEKPDSG---SLSVGETVEFAYVDQGRESLTPGKTVYELISDGQ 417 Query: 173 --------EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 EI + A + Q KKVD+L RLH +L +G Sbjct: 418 ETIRLGGREINARAYCTRFNFHGADQQKKVDMLSGGERNRLHLARMLKSG 467 >gi|256618579|ref|ZP_05475425.1| arsenical pump-driving ATPase ArsA [Enterococcus faecalis ATCC 4200] gi|256598106|gb|EEU17282.1| arsenical pump-driving ATPase ArsA [Enterococcus faecalis ATCC 4200] Length = 580 Score = 35.8 bits (81), Expect = 7.8, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-----FRSAAIDQLKIW---ADR 164 VI +G GVGKTT+ ++ ++D G KV LA D F A DQ+K+ D+ Sbjct: 327 VIFTMGKGGVGKTTIAAAIATGLADKGKKVHLATTDPAAHLQFVIAESDQIKVSHIDEDK 386 Query: 165 TSADFV 170 AD+ Sbjct: 387 ELADYT 392 >gi|153855897|ref|ZP_01996859.1| hypothetical protein DORLON_02884 [Dorea longicatena DSM 13814] gi|149751800|gb|EDM61731.1| hypothetical protein DORLON_02884 [Dorea longicatena DSM 13814] Length = 455 Score = 35.8 bits (81), Expect = 7.9, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 69/139 (49%), Gaps = 29/139 (20%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS--ADFV 170 ++LV G G+GK+T++ ++ +K++D KV+ +G+ ++ Q+K+ A+R AD + Sbjct: 93 LVLVGGDPGIGKSTLLLQVCQKLADKQKKVLYISGE----ESLKQIKLRANRMGEFADSL 148 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 ++ AA+ K+ DV++ID+ ++N + AP Sbjct: 149 FLLCETNLAAIQSVIEKETP----DVVVIDSIQTMYNEEV----------------SSAP 188 Query: 231 HSVLQVLDATTGQNALRQV 249 SV QV ++T N L Q+ Sbjct: 189 GSVSQVREST---NVLMQL 204 >gi|315171675|gb|EFU15692.1| arsenite-activated ATPase [Enterococcus faecalis TX1342] Length = 580 Score = 35.8 bits (81), Expect = 8.0, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-----FRSAAIDQLKIW---ADR 164 VI +G GVGKTT+ ++ ++D G KV LA D F A DQ+K+ D+ Sbjct: 327 VIFTMGKGGVGKTTIAAAIATGLADKGKKVHLATTDPAAHLQFVIAESDQIKVSHIDEDK 386 Query: 165 TSADFV 170 AD+ Sbjct: 387 ELADYT 392 >gi|257079614|ref|ZP_05573975.1| arsenical pump-driving ATPase ArsA [Enterococcus faecalis JH1] gi|294780894|ref|ZP_06746248.1| putative arsenite-transporting ATPase [Enterococcus faecalis PC1.1] gi|256987644|gb|EEU74946.1| arsenical pump-driving ATPase ArsA [Enterococcus faecalis JH1] gi|294452020|gb|EFG20468.1| putative arsenite-transporting ATPase [Enterococcus faecalis PC1.1] Length = 580 Score = 35.8 bits (81), Expect = 8.1, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 13/94 (13%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 E + +++ P + P D + H VI +G GVGKTT+ ++ ++D G KV L Sbjct: 299 EFLTEIVTPRAFPRLKDIVNELHQSGKKVIFTMGKGGVGKTTIAAAIATGLADKGKKVHL 358 Query: 145 AAGDT-----FRSAAIDQLKIW---ADRTSADFV 170 A D F + DQ+K+ D+ AD+ Sbjct: 359 ATTDPAAHLQFVISESDQIKVSHIDEDKELADYT 392 >gi|315161703|gb|EFU05720.1| arsenite-activated ATPase [Enterococcus faecalis TX0645] Length = 580 Score = 35.8 bits (81), Expect = 8.1, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 13/94 (13%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 E + +++ P + P D + H VI +G GVGKTT+ ++ ++D G KV L Sbjct: 299 EFLTEIVTPRAFPRLKDIVNELHQSGKKVIFTMGKGGVGKTTIAAAIATGLADKGKKVHL 358 Query: 145 AAGDT-----FRSAAIDQLKIW---ADRTSADFV 170 A D F + DQ+K+ D+ AD+ Sbjct: 359 ATTDPAAHLQFVISESDQIKVSHIDEDKELADYT 392 >gi|74318448|ref|YP_316188.1| putative ABC transporter ATP-binding protein [Thiobacillus denitrificans ATCC 25259] gi|74057943|gb|AAZ98383.1| ABC transporter ATPase [Thiobacillus denitrificans ATCC 25259] Length = 595 Score = 35.8 bits (81), Expect = 8.1, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 31/173 (17%) Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPF-------NWDFSHRPHVIL-V 116 EEL + Y K Q + V E + ++ SK F + FS P I+ + Sbjct: 335 EELNSAEYQKRNETQEIFIPVGERLGDKVIDFHNVSKSFGDRLLIDDLSFSVPPGAIVGI 394 Query: 117 VGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--IWADRTSADFVCSE 173 +G NG GK+T ++ ++ D+G + G T + A +DQ + + AD+T D V Sbjct: 395 IGPNGAGKSTFFKMITGQEKPDSG---EVEIGQTVKLAYVDQSRDALAADKTVFDEVAE- 450 Query: 174 IGSDAAALA-YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214 G D A+ YE +A Q K+V L GRLH L++G Sbjct: 451 -GRDILAVGRYEIPSRAYLGRFNFKGGDQQKRVGDLSGGERGRLHMAKTLISG 502 >gi|260847281|ref|YP_003225059.1| fused putative transporter subunits of ABC superfamily: ATP-binding components [Escherichia coli O103:H2 str. 12009] gi|257762428|dbj|BAI33925.1| fused predicted transporter subunits of ABC superfamily: ATP-binding components [Escherichia coli O103:H2 str. 12009] Length = 555 Score = 35.8 bits (81), Expect = 8.2, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 94/229 (41%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ TKG S ++ S+ R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGTKGRQSKGKARLARFEELNSTEYQK---RNETNELFIPP--GPR 318 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 + K++E VS R Y LI + + K ++ ++G NG Sbjct: 319 LGDKVLE----------VSNLRKSYGDRLLIDDLSFSIPKG---------AIVGIIGPNG 359 Query: 122 VGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 GK+T+ +S ++ D+G V LA+ D FR + + +W + S +IG Sbjct: 360 AGKSTLFRMISGQEQPDSGTITLGETVKLASVDQFRDSMDNSKTVW-EEVSGGLDIMKIG 418 Query: 176 -SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 ++ + AY FK Q K+V L GRLH +L G G M+ Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKVLQVG-GNML 466 >gi|257065653|ref|YP_003151909.1| DNA repair protein RadA [Anaerococcus prevotii DSM 20548] gi|256797533|gb|ACV28188.1| DNA repair protein RadA [Anaerococcus prevotii DSM 20548] Length = 456 Score = 35.8 bits (81), Expect = 8.2, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 13/96 (13%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 R V ++ G GK+T++ +LSK +D GLKV+ +G+ S Q+K ADR ++ Sbjct: 85 RDSVSILTARPGAGKSTLLLQLSKSYADKGLKVIYISGEESES----QIKSRADRIMSEL 140 Query: 170 VCSE----IGSDAAALAYEAFKQAQAKKVDVLIIDT 201 SE + +++ LA + K A D++ +D+ Sbjct: 141 --SENIWILSTNSMDLAIKEIKNVDA---DIVFLDS 171 >gi|221368952|ref|YP_002520048.1| LAO/AO transport system ATPase [Rhodobacter sphaeroides KD131] gi|221162004|gb|ACM02975.1| LAO/AO transport system ATPase [Rhodobacter sphaeroides KD131] Length = 323 Score = 35.8 bits (81), Expect = 8.2, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 26/37 (70%) Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 HV+ + GV G GK+T++ KL +K+ DAG +V + A D Sbjct: 52 HVVGITGVPGSGKSTMVSKLVRKLLDAGERVAVVAID 88 >gi|152973310|ref|YP_001338456.1| putative ABC transporter ATP-binding protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330006931|ref|ZP_08305800.1| ATP-binding cassette protein, ChvD family [Klebsiella sp. MS 92-3] gi|150958159|gb|ABR80189.1| putative ATP-binding component of a transport system [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328535618|gb|EGF62070.1| ATP-binding cassette protein, ChvD family [Klebsiella sp. MS 92-3] Length = 548 Score = 35.8 bits (81), Expect = 8.2, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + ++ R E +L I G Sbjct: 257 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNVEYQKRNETNELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E L K Y V + + + V + ++ ++G N Sbjct: 312 LGDKVLEVSHLRKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 351 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S ++ D+G V LA+ D FR A + +W + S +I Sbjct: 352 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 410 Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 G ++ + AY FK Q K+V L GRLH +L G Sbjct: 411 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 455 >gi|238892977|ref|YP_002917711.1| putative ABC transporter ATP-binding protein [Klebsiella pneumoniae NTUH-K2044] gi|238545293|dbj|BAH61644.1| putative ATP-binding component of a transport system [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 555 Score = 35.8 bits (81), Expect = 8.3, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + ++ R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNVEYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E L K Y V + + + V + ++ ++G N Sbjct: 319 LGDKVLEVSHLRKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S ++ D+G V LA+ D FR A + +W + S +I Sbjct: 359 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 417 Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 G ++ + AY FK Q K+V L GRLH +L G Sbjct: 418 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462 >gi|18450319|ref|NP_569190.1| hypothetical protein pli0037 [Listeria innocua Clip11262] gi|16415820|emb|CAC42035.1| pli0037 [Listeria innocua Clip11262] gi|332312689|gb|EGJ25784.1| Arsenical pump-driving ATPase [Listeria monocytogenes str. Scott A] Length = 580 Score = 35.8 bits (81), Expect = 8.3, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 13/94 (13%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 E + +++ P + P D + H VI +G GVGKTT+ ++ ++D G KV L Sbjct: 299 EFLTEIVTPRAFPRLKDIVNELHQSGKKVIFTMGKGGVGKTTIAAAIATGLADKGKKVHL 358 Query: 145 AAGDT-----FRSAAIDQLKIW---ADRTSADFV 170 A D F + DQ+K+ D+ AD+ Sbjct: 359 ATTDPAAHLQFVISESDQIKVSHIDEDKELADYT 392 >gi|218780796|ref|YP_002432114.1| DNA repair protein RadA [Desulfatibacillum alkenivorans AK-01] gi|218762180|gb|ACL04646.1| DNA repair protein RadA [Desulfatibacillum alkenivorans AK-01] Length = 456 Score = 35.8 bits (81), Expect = 8.4, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 42/66 (63%), Gaps = 8/66 (12%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168 ++L+ G G+GK+T++ ++ + ++ AGLKV+ +G+ ++ Q+K+ + RT + Sbjct: 93 MVLIGGDPGIGKSTLMLQVMQSLAYAGLKVLYVSGEE----SVRQIKLRSQRTGSPSPNL 148 Query: 169 FVCSEI 174 FV SEI Sbjct: 149 FVYSEI 154 >gi|313889467|ref|ZP_07823115.1| arsenite-transporting ATPase [Streptococcus pseudoporcinus SPIN 20026] gi|157419736|gb|ABV55425.1| arsenical pump-driving ATPase ArsA [Streptococcus dysgalactiae subsp. equisimilis] gi|313122299|gb|EFR45390.1| arsenite-transporting ATPase [Streptococcus pseudoporcinus SPIN 20026] Length = 580 Score = 35.8 bits (81), Expect = 8.4, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 13/94 (13%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 E + +++ P + P D + H VI +G GVGKTT+ ++ ++D G KV L Sbjct: 299 EFLTEIVTPRAFPRLKDIVNELHQSDKKVIFTMGKGGVGKTTIAAAIATGLADKGKKVHL 358 Query: 145 AAGDT-----FRSAAIDQLKIW---ADRTSADFV 170 A D F + DQ+K+ D+ AD+ Sbjct: 359 ATTDPAAHLQFVISESDQIKVSHIDEDKELADYT 392 >gi|238752649|ref|ZP_04614121.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia rohdei ATCC 43380] gi|238709163|gb|EEQ01409.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia rohdei ATCC 43380] Length = 529 Score = 35.8 bits (81), Expect = 8.5, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 91/229 (39%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG + K K + ++ R E +L I G Sbjct: 238 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 292 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E E L+K Y V LI + L K ++ ++G N Sbjct: 293 LGDKVLEVEHLSKSYGDRV-----------LIDDLTFALPKG---------AIVGIIGPN 332 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172 G GK+T+ LS ++ D+G V+LA+ D FR +W + + + Sbjct: 333 GAGKSTLFRMLSGQEQPDSGTISLGDTVILASVDQFRDNMDGSKTVWEEVSGGQDIMKIG 392 Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 EI S A + Q K+V L GR+H +L G G M+ Sbjct: 393 NFEIPSRAYVGRFNFKGIDQGKRVGELSGGERGRIHLAKLLQVG-GNML 440 >gi|326626260|gb|EGE32605.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 548 Score = 35.8 bits (81), Expect = 8.6, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + ++ R E +L I G Sbjct: 257 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNSVEYQKRNETNELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E L K Y V + + + V + ++ ++G N Sbjct: 312 LGDKVIEVSNLRKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 351 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S ++ D+G V LA+ D FR A + +W + S +I Sbjct: 352 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 410 Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 G ++ + AY FK Q K+V L GRLH +L G Sbjct: 411 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 455 >gi|255976358|ref|ZP_05426944.1| arsenical pump-driving ATPase ArsA [Enterococcus faecalis T2] gi|255969230|gb|EET99852.1| arsenical pump-driving ATPase ArsA [Enterococcus faecalis T2] Length = 580 Score = 35.8 bits (81), Expect = 8.6, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 13/94 (13%) Query: 90 ELIHKMLMPLSKPFNWDFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144 E + +++ P + P D + H VI +G GVGKTT+ ++ ++D G KV L Sbjct: 299 EFLTEIVTPRAFPRLKDIVNELHQSGKKVIFTMGKGGVGKTTIAAAIATGLADKGKKVHL 358 Query: 145 AAGDT-----FRSAAIDQLKIW---ADRTSADFV 170 A D F + DQ+K+ D+ AD+ Sbjct: 359 ATTDPAAHLQFVISESDQIKVSHIDEDKELADYT 392 >gi|161504876|ref|YP_001571988.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866223|gb|ABX22846.1| hypothetical protein SARI_03002 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 548 Score = 35.8 bits (81), Expect = 8.6, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + ++ R E +L I G Sbjct: 257 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNSVEYQKRNETNELFIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E L K Y V + + + V + ++ ++G N Sbjct: 312 LGDKVIEVSNLRKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 351 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S ++ D+G V LA+ D FR A + +W + S +I Sbjct: 352 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 410 Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 G ++ + AY FK Q K+V L GRLH +L G Sbjct: 411 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 455 >gi|119953215|ref|YP_945424.1| DNA repair protein RadA [Borrelia turicatae 91E135] gi|119861986|gb|AAX17754.1| DNA repair protein RadA [Borrelia turicatae 91E135] Length = 462 Score = 35.8 bits (81), Expect = 8.6, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 67/134 (50%), Gaps = 22/134 (16%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR---TSADFV 170 IL+ G G+GK+T + ++S +S + V+ AG+ +I Q+K+ A+R +S + Sbjct: 91 ILISGEPGIGKSTFLLQISSILSLSDKNVLYLAGE----ESIPQIKLRANRLRISSDILI 146 Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230 +EI D+ K ++D +++D+ LH+ + G+G + ++ Sbjct: 147 TNEINVDS------LIKMLANIELDFIVVDSIQTLHSKEV-QGGLGGVAQL--------K 191 Query: 231 HSVLQVLDATTGQN 244 H V ++++ G+N Sbjct: 192 HCVYKLIEWARGKN 205 >gi|149377813|ref|ZP_01895545.1| ATPase component of ABC transporter with duplicated ATPase domains [Marinobacter algicola DG893] gi|149357928|gb|EDM46418.1| ATPase component of ABC transporter with duplicated ATPase domains [Marinobacter algicola DG893] Length = 546 Score = 35.8 bits (81), Expect = 8.6, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 96/230 (41%), Gaps = 49/230 (21%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 S QK L W+R KG S S K + + +SS+ R E +L I G Sbjct: 257 SRQKTIKHELEWVRSNAKGRQSKS-KARLARFEEMSSQEFQK--RNETNELYIPP--GPR 311 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVG 118 + K++E + ++K + R+LY DVS LS P P I+ ++G Sbjct: 312 LGDKVIEIDGISKSFD-----DRLLYEDVS---------LSVP--------PGAIVGIIG 349 Query: 119 VNGVGKTTV---IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK-------IWADRTSAD 168 NG GK+T+ IG K S + G+T R A +DQ++ +W + + + Sbjct: 350 GNGAGKSTLFRMIGDYDKPNSGT-----ITVGETVRLAYVDQMRDLNGDNTVWEELSDGN 404 Query: 169 FVCSEIGSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 + + + AY FK + Q K+V L RLH +L G Sbjct: 405 DIIKIGNYETPSRAYVGRFNFKGSDQQKRVADLSGGERNRLHLAKLLKEG 454 >gi|108809829|ref|YP_653745.1| ATPase [Yersinia pestis Antiqua] gi|167400607|ref|ZP_02306116.1| ATPase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|108781742|gb|ABG15800.1| ATPase [Yersinia pestis Antiqua] gi|167049975|gb|EDR61383.1| ATPase [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 278 Score = 35.8 bits (81), Expect = 8.7, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 11/117 (9%) Query: 113 VILVVGVNGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTS 166 ++ ++G NG GK+T+ LS ++ D+G V LA+ D FR D +W + + Sbjct: 74 IVGIIGPNGAGKSTLFRMLSGQEQPDSGTISLGDTVQLASVDQFRDNMDDSKTVWEEVSG 133 Query: 167 ADFVCS----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 + E+ S A + Q K++ L GR+H +L G G M+ Sbjct: 134 GQDIMKIGNFELPSRAYVGRFNFKGVDQGKRIGELSGGERGRIHLAKLLQVG-GNML 189 >gi|110808179|ref|YP_691699.1| putative ABC transporter ATP-binding protein [Shigella flexneri 5 str. 8401] gi|110617727|gb|ABF06394.1| putative ATP-binding component of a transport system [Shigella flexneri 5 str. 8401] Length = 548 Score = 35.8 bits (81), Expect = 8.8, Method: Compositional matrix adjust. Identities = 55/228 (24%), Positives = 90/228 (39%), Gaps = 35/228 (15%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ TKG S ++ S+ R E +L I G Sbjct: 257 ARRKSIEKELEWVRQGTKGRQSKGKARLARFEELNSTEYQK---RNETNELFIPP--GPR 311 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 + K++E VS R Y LI + + K ++ ++G NG Sbjct: 312 LGDKVLE----------VSNLRKSYGDRLLIDDLSFSIPKG---------AIVGIIGPNG 352 Query: 122 VGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSA----DFVC 171 GK+T+ +S ++ D+G V LA+ D FR + + +W + + Sbjct: 353 AGKSTLFRMISGQEQPDSGTITLGETVKLASVDQFRDSMDNSKTVWEEVSGGLDIMKIGN 412 Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 +EI S A + Q K+V L GRLH +L G G M+ Sbjct: 413 TEIPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 459 >gi|261249661|emb|CBG27532.1| conserved hypothetical ABC transporter [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 555 Score = 35.8 bits (81), Expect = 8.8, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + ++ R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNSVEYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E L K Y V + + + V + ++ ++G N Sbjct: 319 LGDKVIEVSNLRKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S ++ D+G V LA+ D FR A + +W + S +I Sbjct: 359 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 417 Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 G ++ + AY FK Q K+V L GRLH +L G Sbjct: 418 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462 >gi|168234714|ref|ZP_02659772.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194738154|ref|YP_002117492.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713656|gb|ACF92877.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291789|gb|EDY31139.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 555 Score = 35.8 bits (81), Expect = 8.9, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + ++ R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNSVEYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E L K Y V + + + V + ++ ++G N Sbjct: 319 LGDKVIEVSNLRKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S ++ D+G V LA+ D FR A + +W + S +I Sbjct: 359 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 417 Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 G ++ + AY FK Q K+V L GRLH +L G Sbjct: 418 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462 >gi|89072601|ref|ZP_01159173.1| putative ABC transporter, ATP-binding protein [Photobacterium sp. SKA34] gi|89051705|gb|EAR57158.1| putative ABC transporter, ATP-binding protein [Photobacterium sp. SKA34] Length = 555 Score = 35.8 bits (81), Expect = 8.9, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 30/158 (18%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 QK + L W+R+ KG + S K + + +S+ + R E +L I G + Sbjct: 266 QKTIEKELEWVRQNPKGRQAKS-KARMARFEELSTN--EHQKRNETNELFIPP--GERLG 320 Query: 64 QKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 K++E + LTK + RVL D + S P + ++ ++G NG Sbjct: 321 DKVIEVKNLTKSFG-----DRVLIDD--------LSFSMP-------KGAIVGIIGANGA 360 Query: 123 GKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK 159 GK+T+ LS + D+G + GDT + A++DQ + Sbjct: 361 GKSTLFKMLSGTEQPDSG---TIELGDTVKLASVDQFR 395 >gi|222110404|ref|YP_002552668.1| ABC transporter ATP-binding protein [Acidovorax ebreus TPSY] gi|221729848|gb|ACM32668.1| ABC transporter related [Acidovorax ebreus TPSY] Length = 553 Score = 35.8 bits (81), Expect = 9.0, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 10/112 (8%) Query: 113 VILVVGVNGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTS 166 ++ ++G NG GK+T+ ++ K+ D+G V +A D R A D +W D + Sbjct: 350 IVGIIGPNGAGKSTLFKLIAGKEQPDSGTVEIGQTVKMAFVDQHRDALADDKTVWEDISG 409 Query: 167 ADFVCS----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 + + ++ S A A + Q Q KKV L GRLH L+ G Sbjct: 410 GLDIINVGKFQMASRAYAGRFNFNGQDQQKKVGNLSGGERGRLHLAKTLIQG 461 >gi|162452744|ref|YP_001615111.1| twitching motility protein [Sorangium cellulosum 'So ce 56'] gi|161163326|emb|CAN94631.1| twitching motility protein [Sorangium cellulosum 'So ce 56'] Length = 379 Score = 35.8 bits (81), Expect = 9.0, Method: Compositional matrix adjust. Identities = 45/191 (23%), Positives = 74/191 (38%), Gaps = 47/191 (24%) Query: 102 PFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160 P D + +P ++LV G G GKTT + + K++ +L D +L + Sbjct: 126 PVVLDITAKPRGLVLVTGPTGSGKTTTLASIIDKINSEQRLHILTIEDPIEYLHPHKLSL 185 Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI---------IDTA--------- 202 R EIGSD A+ +A + A + DV++ +++A Sbjct: 186 VNQR--------EIGSDTASFK-DALRYALRQDPDVVLVGEMRDLETVESALTIAETGHL 236 Query: 203 --GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260 LH NS I + R++ PH Q+ +RQ F VA T Sbjct: 237 VFATLHTNS----AISTINRIIDVFPPHQ-------------QSQVRQQLSFTLVAVMTQ 279 Query: 261 LIMTKMDGTAR 271 L++ + +G R Sbjct: 280 LLLPRANGPGR 290 >gi|296110940|ref|YP_003621321.1| transcriptional regulator, LysR family [Leuconostoc kimchii IMSNU 11154] gi|295832471|gb|ADG40352.1| transcriptional regulator, LysR family [Leuconostoc kimchii IMSNU 11154] Length = 274 Score = 35.8 bits (81), Expect = 9.2, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 10/87 (11%) Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI- 210 S A+DQL + D +S ++ E GS + FKQ L I NN + Sbjct: 160 SIAVDQLVLAGDLSSDTWLVREKGSGVYHYMQQYFKQEYIVPSQFLTIS------NNDVI 213 Query: 211 ---LMAGIGKMIRVLKRLDPHAPHSVL 234 L AGIGK I ++ L H P+ L Sbjct: 214 VKMLSAGIGKSIVSIQSLPEHVPYKTL 240 >gi|253577149|ref|ZP_04854469.1| DNA repair protein RadA [Paenibacillus sp. oral taxon 786 str. D14] gi|251843393|gb|EES71421.1| DNA repair protein RadA [Paenibacillus sp. oral taxon 786 str. D14] Length = 455 Score = 35.8 bits (81), Expect = 9.2, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 14/93 (15%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR---TSAD- 168 ++LV G G+GK+T++ + S +M+ +GL+V+ +G+ ++ Q K+ A+R SA+ Sbjct: 91 LVLVGGDPGIGKSTLLLQTSHEMARSGLRVLYISGEE----SVRQTKLRAERLGTLSAEL 146 Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 FV E D A E K + L+ID+ Sbjct: 147 FVLCESSMDGIEEAIEQVKP------NFLVIDS 173 >gi|257060212|ref|YP_003138100.1| cobalamin synthesis protein P47K [Cyanothece sp. PCC 8802] gi|256590378|gb|ACV01265.1| cobalamin synthesis protein P47K [Cyanothece sp. PCC 8802] Length = 378 Score = 35.8 bits (81), Expect = 9.2, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 15/134 (11%) Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P+ P H V ++ G G GKTT++ + GLK + + F ID Sbjct: 13 PMDTP-----KHGLPVTIITGFLGSGKTTLLNHILSNQE--GLKTAVLVNE-FGEIGIDN 64 Query: 158 LKIWAD-----RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 I S VC I D Y+ ++ + KVD L+++T G + + Sbjct: 65 ELIVTTSDNMVELSNGCVCCTINEDLIQAVYKVLERPE--KVDYLVVETTGIADPLPVAL 122 Query: 213 AGIGKMIRVLKRLD 226 +G +R + RLD Sbjct: 123 TFLGTELRDMTRLD 136 >gi|294816849|ref|ZP_06775491.1| Amino acid adenylation domain protein [Streptomyces clavuligerus ATCC 27064] gi|294321664|gb|EFG03799.1| Amino acid adenylation domain protein [Streptomyces clavuligerus ATCC 27064] Length = 867 Score = 35.8 bits (81), Expect = 9.3, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 52/131 (39%), Gaps = 26/131 (19%) Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF- 186 IG+L + SD G +L GD RS WA T D V + +G+D +AL+Y Sbjct: 216 IGQLPGQASDPGPGDLLMPGDLVRS--------WAVATP-DAV-ALLGADGSALSYRELS 265 Query: 187 -----------KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 + + V VL D+ G ++ M R LDP APHS Sbjct: 266 ALADSLAARLERAGRGGPVAVLASDSEG----AALAMVACQFADRCFVMLDPDAPHSRNT 321 Query: 236 VLDATTGQNAL 246 L A G L Sbjct: 322 ALVAAAGCEVL 332 >gi|307717859|ref|YP_003873391.1| hypothetical protein STHERM_c01420 [Spirochaeta thermophila DSM 6192] gi|306531584|gb|ADN01118.1| hypothetical protein STHERM_c01420 [Spirochaeta thermophila DSM 6192] Length = 447 Score = 35.8 bits (81), Expect = 9.4, Method: Compositional matrix adjust. Identities = 26/101 (25%), Positives = 56/101 (55%), Gaps = 7/101 (6%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 R V+LV G GVGK+T++ +++ +++ G+KV+ AAG+ ++ Q+ A R Sbjct: 85 RGSVVLVGGEPGVGKSTLVLQVAARLA-GGVKVVYAAGEE----SVGQVAARAARLGCGK 139 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 E+ ++ + EA + ++ DV+++D+ L++ + Sbjct: 140 AEVELAAETQVESLEAL--LRQRRADVVVVDSLQMLYSPQM 178 >gi|254389577|ref|ZP_05004803.1| phenyloxazoline synthase mbtB [Streptomyces clavuligerus ATCC 27064] gi|197703290|gb|EDY49102.1| phenyloxazoline synthase mbtB [Streptomyces clavuligerus ATCC 27064] Length = 883 Score = 35.8 bits (81), Expect = 9.4, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 51/122 (41%), Gaps = 8/122 (6%) Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAI---DQLKIWADRTSADFVCSEIGSDAAALAYE 184 IG+L + SD G +L GD RS A+ D + + SA E+ + A +LA Sbjct: 232 IGQLPGQASDPGPGDLLMPGDLVRSWAVATPDAVALLGADGSA-LSYRELSALADSLAAR 290 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 + + V VL D+ G ++ M R LDP APHS L A G Sbjct: 291 LERAGRGGPVAVLASDSEG----AALAMVACQFADRCFVMLDPDAPHSRNTALVAAAGCE 346 Query: 245 AL 246 L Sbjct: 347 VL 348 >gi|16767822|ref|NP_463437.1| ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56416351|ref|YP_153426.1| ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161617892|ref|YP_001591857.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552195|ref|ZP_02345948.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167989825|ref|ZP_02570925.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230229|ref|ZP_02655287.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168464498|ref|ZP_02698401.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822122|ref|ZP_02834122.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444102|ref|YP_002043823.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194469367|ref|ZP_03075351.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197249939|ref|YP_002149524.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262659|ref|ZP_03162733.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197365273|ref|YP_002144910.1| ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198244231|ref|YP_002218452.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388552|ref|ZP_03215164.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204927165|ref|ZP_03218367.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205355295|ref|YP_002229096.1| ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859702|ref|YP_002246353.1| ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238910740|ref|ZP_04654577.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16423147|gb|AAL23396.1| putative transport protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56130608|gb|AAV80114.1| conserved hypothetical ABC transporter [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161367256|gb|ABX71024.1| hypothetical protein SPAB_05759 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402765|gb|ACF62987.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194455731|gb|EDX44570.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195632583|gb|EDX51037.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197096750|emb|CAR62373.1| conserved hypothetical ABC transporter [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213642|gb|ACH51039.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240914|gb|EDY23534.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197938747|gb|ACH76080.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605650|gb|EDZ04195.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323830|gb|EDZ09025.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205275076|emb|CAR40165.1| conserved hypothetical ABC transporter [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205323135|gb|EDZ10974.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331494|gb|EDZ18258.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335037|gb|EDZ21801.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205341427|gb|EDZ28191.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206711505|emb|CAR35890.1| conserved hypothetical ABC transporter [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|267996945|gb|ACY91830.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301161060|emb|CBW20597.1| conserved hypothetical ABC transporter [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915675|dbj|BAJ39649.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320089010|emb|CBY98766.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222450|gb|EFX47522.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615742|gb|EFY12662.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620590|gb|EFY17450.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322621783|gb|EFY18633.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627508|gb|EFY24299.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630815|gb|EFY27579.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637967|gb|EFY34668.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642237|gb|EFY38845.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644958|gb|EFY41490.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651122|gb|EFY47507.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656622|gb|EFY52910.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658720|gb|EFY54977.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661838|gb|EFY58054.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666416|gb|EFY62594.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672428|gb|EFY68540.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676264|gb|EFY72335.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679647|gb|EFY75692.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684357|gb|EFY80361.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323132922|gb|ADX20352.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323191839|gb|EFZ77088.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196690|gb|EFZ81837.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200959|gb|EFZ86028.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209356|gb|EFZ94289.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212957|gb|EFZ97759.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216700|gb|EGA01425.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219803|gb|EGA04282.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226133|gb|EGA10350.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228786|gb|EGA12915.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236603|gb|EGA20679.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239897|gb|EGA23944.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242056|gb|EGA26085.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247504|gb|EGA31459.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250605|gb|EGA34487.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259335|gb|EGA42977.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263788|gb|EGA47309.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265618|gb|EGA49114.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270063|gb|EGA53511.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326630463|gb|EGE36806.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332991387|gb|AEF10370.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 555 Score = 35.8 bits (81), Expect = 9.4, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + ++ R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNSVEYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E L K Y V + + + V + ++ ++G N Sbjct: 319 LGDKVIEVSNLRKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S ++ D+G V LA+ D FR A + +W + S +I Sbjct: 359 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 417 Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 G ++ + AY FK Q K+V L GRLH +L G Sbjct: 418 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462 >gi|327400904|ref|YP_004341743.1| adenylyl-sulfate kinase [Archaeoglobus veneficus SNP6] gi|327316412|gb|AEA47028.1| Adenylyl-sulfate kinase [Archaeoglobus veneficus SNP6] Length = 172 Score = 35.8 bits (81), Expect = 9.5, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 25/40 (62%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152 VI + G +G GKTT+ L +K+S+ GL V + GD RS Sbjct: 4 VIWLTGPSGAGKTTLANALYEKLSEMGLNVEVLDGDGIRS 43 >gi|319407050|emb|CBI80687.1| DNA repair protein [Bartonella sp. 1-1C] Length = 462 Score = 35.8 bits (81), Expect = 9.5, Method: Compositional matrix adjust. Identities = 25/99 (25%), Positives = 52/99 (52%), Gaps = 5/99 (5%) Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169 R +L+ G G+GK+T++ + + +S G V+ +G+ AI Q+++ A R +A Sbjct: 88 RGSALLIAGDPGIGKSTLLTQTAAALSQKGYNVIYVSGE----EAITQIRLRAQRLNATD 143 Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 ++ ++ A A +K+D++I+D+ L +N Sbjct: 144 TAVQLAAETNVEDILATLNAH-EKLDMVIVDSIQTLWSN 181 >gi|317130043|ref|YP_004096325.1| adenylylsulfate kinase [Bacillus cellulosilyticus DSM 2522] gi|315474991|gb|ADU31594.1| adenylylsulfate kinase [Bacillus cellulosilyticus DSM 2522] Length = 202 Score = 35.8 bits (81), Expect = 9.5, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 26/44 (59%) Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151 +H+ V+ G++G GK+T+ + KK+ D G++ + GD R Sbjct: 27 NHKGSVVWFTGLSGSGKSTLANAVEKKLHDQGIRTYVLDGDNIR 70 >gi|114777095|ref|ZP_01452115.1| ABC transporter related protein [Mariprofundus ferrooxydans PV-1] gi|114552616|gb|EAU55076.1| ABC transporter related protein [Mariprofundus ferrooxydans PV-1] Length = 556 Score = 35.8 bits (81), Expect = 9.5, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 30/158 (18%) Query: 2 SNQKVASESLSWIRKLTKG-FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 S QK E L W+R TKG A + +LK D +SSR + + R + + I S Sbjct: 266 SRQKAMREELEWVRAGTKGRHAKSKARLK--AFDNLSSREMQE--RNATKQIFIPSG--- 318 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 E L K V V++ D ++L+ + N+D R ++ ++G N Sbjct: 319 --------ERLGDIVFKAVDVKKGFGD------RLLV---ENLNFDLP-RGGIVGIIGAN 360 Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQ 157 G GKTT+ L+ + D+G L G+T + + +DQ Sbjct: 361 GAGKTTLFRMLTGQDKPDSG---ELIVGETVKVSYVDQ 395 >gi|121594946|ref|YP_986842.1| putative ABC transporter ATP-binding protein [Acidovorax sp. JS42] gi|120607026|gb|ABM42766.1| ABC transporter related protein [Acidovorax sp. JS42] Length = 579 Score = 35.8 bits (81), Expect = 9.5, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 10/112 (8%) Query: 113 VILVVGVNGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTS 166 ++ ++G NG GK+T+ ++ K+ D+G V +A D R A D +W D + Sbjct: 376 IVGIIGPNGAGKSTLFKLIAGKEQPDSGTVEIGQTVKMAFVDQHRDALADDKTVWEDISG 435 Query: 167 ADFVCS----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 + + ++ S A A + Q Q KKV L GRLH L+ G Sbjct: 436 GLDIINVGKFQMASRAYAGRFNFNGQDQQKKVGNLSGGERGRLHLAKTLIQG 487 >gi|306815411|ref|ZP_07449560.1| putative ABC transporter ATP-binding protein [Escherichia coli NC101] gi|305851073|gb|EFM51528.1| putative ABC transporter ATP-binding protein [Escherichia coli NC101] Length = 555 Score = 35.8 bits (81), Expect = 9.5, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 94/229 (41%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ TKG S ++ S+ R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGTKGRQSKGKARLARFEELNSTEYQK---RNETNELFIPP--GPR 318 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 + K++E VS R Y LI + + K ++ ++G NG Sbjct: 319 LGDKVLE----------VSNLRKSYGDRLLIDSLSFSIPKG---------AIVGIIGPNG 359 Query: 122 VGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 GK+T+ +S ++ D+G V LA+ D FR + + +W + S +IG Sbjct: 360 AGKSTLFRMISGQEQPDSGTITLGETVKLASVDQFRDSMDNSKTVW-EEVSGGLDIMKIG 418 Query: 176 -SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 ++ + AY FK Q K+V L GRLH +L G G M+ Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466 >gi|218247141|ref|YP_002372512.1| cobalamin synthesis protein P47K [Cyanothece sp. PCC 8801] gi|218167619|gb|ACK66356.1| cobalamin synthesis protein P47K [Cyanothece sp. PCC 8801] Length = 378 Score = 35.8 bits (81), Expect = 9.5, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 15/134 (11%) Query: 98 PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157 P+ P H V ++ G G GKTT++ + GLK + + F ID Sbjct: 13 PMDTP-----KHGLPVTIITGFLGSGKTTLLNHILSNQE--GLKTAVLVNE-FGEIGIDN 64 Query: 158 LKIWAD-----RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212 I S VC I D Y+ ++ + KVD L+++T G + + Sbjct: 65 ELIVTTSDNMVELSNGCVCCTINEDLIQAVYKVLERPE--KVDYLVVETTGIADPLPVAL 122 Query: 213 AGIGKMIRVLKRLD 226 +G +R + RLD Sbjct: 123 TFLGTELRDMTRLD 136 >gi|168262364|ref|ZP_02684337.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205348804|gb|EDZ35435.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 555 Score = 35.8 bits (81), Expect = 9.6, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ KG S K K + ++ R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNSVEYQKRNETNELFIPP--GPR 318 Query: 62 VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + K++E L K Y V + + + V + ++ ++G N Sbjct: 319 LGDKVIEVSNLRKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 358 Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 G GK+T+ +S ++ D+G V LA+ D FR A + +W + S +I Sbjct: 359 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 417 Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214 G ++ + AY FK Q K+V L GRLH +L G Sbjct: 418 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462 >gi|301167756|emb|CBW27340.1| putative ATP-binding component of ABC transporter [Bacteriovorax marinus SJ] Length = 561 Score = 35.8 bits (81), Expect = 9.7, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 93/229 (40%), Gaps = 51/229 (22%) Query: 4 QKVASESLSWIRKLTKGF-ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62 QK E L WIR K A + ++K SS+ R E DL I + G + Sbjct: 272 QKAMKEELEWIRSSPKARQAKSKARIKSYDERFKSSQE----KRNETNDLFIPT--GPRL 325 Query: 63 AQKIVEELLTKRYAKDVSV---QRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVG 118 ++E A++VS +VLYD N +F P V+ ++G Sbjct: 326 GNSVIE-------AENVSKAFDDKVLYD----------------NLNFQLPPGGVVGIIG 362 Query: 119 VNGVGKTTVIGKLS--KKMSDAGLKVMLAAGDTFRSAAIDQLK-IWADRTSADFVC---- 171 NG GKTT+ ++ ++ + KV GDT + + +DQ + + ++T + V Sbjct: 363 ANGAGKTTLFRMITGEQEPTSGTFKV----GDTVKLSYVDQGRALDPEKTIYETVSGGTE 418 Query: 172 ------SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 E+ S A + + Q KKV L R+H + L+ G Sbjct: 419 FIKLGEQEVNSRAYIAKFNFSGEDQKKKVSELSGGERNRVHLAATLLTG 467 >gi|332519260|ref|ZP_08395727.1| DNA repair protein RadA [Lacinutrix algicola 5H-3-7-4] gi|332045108|gb|EGI81301.1| DNA repair protein RadA [Lacinutrix algicola 5H-3-7-4] Length = 452 Score = 35.8 bits (81), Expect = 9.8, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 9/96 (9%) Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174 L+ G G+GK+T++ ++S K+ K + +G+ + Q+K+ A+R + D I Sbjct: 95 LLGGEPGIGKSTLLLQISLKLP---YKTLYVSGEESQK----QIKMRAERINPDNESCYI 147 Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210 ++ FKQ +A + D++IID+ LH++ I Sbjct: 148 LTETKT--QNIFKQIEALEPDIVIIDSIQTLHSDYI 181 >gi|294054330|ref|YP_003547988.1| LAO/AO transport system ATPase [Coraliomargarita akajimensis DSM 45221] gi|293613663|gb|ADE53818.1| LAO/AO transport system ATPase [Coraliomargarita akajimensis DSM 45221] Length = 322 Score = 35.8 bits (81), Expect = 9.8, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 21/125 (16%) Query: 98 PLSKPFNWDFSHR--PHV-----ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150 P P+ + R PH + + GV G GK+T I L + G KV + A D Sbjct: 34 PKHAPYAKELMKRLLPHTGGSIRVGLTGVPGAGKSTTIEALGMYLCKEGKKVAVLAVDP- 92 Query: 151 RSAAIDQLKIWADRTSADFVCSEIGS------------DAAALAYEAFKQAQAKKVDVLI 198 S+++ I D+T + +C E + AA EA +A DV+I Sbjct: 93 -SSSVHGGSILGDKTRMEDLCREENAFIRPSPSGNSLGGVAARTREALLICEAAGYDVVI 151 Query: 199 IDTAG 203 ++T G Sbjct: 152 VETVG 156 >gi|270293594|ref|ZP_06199796.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275061|gb|EFA20921.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 491 Score = 35.8 bits (81), Expect = 9.9, Method: Compositional matrix adjust. Identities = 52/240 (21%), Positives = 97/240 (40%), Gaps = 46/240 (19%) Query: 82 QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141 Q ++ ++ L+ L++P DF H I +VG NG GK+ ++ L++K + Sbjct: 4 QHTIHIAGGVVRNPLVRLTEPVTLDFLAGEH-IAIVGPNGAGKSLLVDMLTEKYPLRDGE 62 Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201 + + A D +K A R + GS A Y+ A ++ L+ + Sbjct: 63 LTYDFSPSLTKTAYDNIKYIAFRDT-------YGSADANYYYQQRWNAHDQEDAPLVREV 115 Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV------ 255 G + ++ +L + ++ + LD +++ ++G+ LR+ ++ A+ Sbjct: 116 LGEVKDD-VLRRQLFELFSIEPMLDK-------KIILLSSGE--LRKFQLTKALLTVPRI 165 Query: 256 -----------AGTTGLIMTKMDGTARGGGL-----------IPIVVTHKIPVYFLGVGE 293 A T L+ +D R G L IP VTH +PV + VGE Sbjct: 166 LIMDNPFIGLDAPTRELLFNLLDRLTRLGELQIVLVLSMLDDIPSFVTHVVPVEEMKVGE 225 >gi|254168450|ref|ZP_04875294.1| hypothetical protein ABOONEI_2618 [Aciduliprofundum boonei T469] gi|197622505|gb|EDY35076.1| hypothetical protein ABOONEI_2618 [Aciduliprofundum boonei T469] Length = 633 Score = 35.8 bits (81), Expect = 9.9, Method: Compositional matrix adjust. Identities = 15/34 (44%), Positives = 25/34 (73%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146 ++LV+G G GKT VI K++K+ SD G +V++ + Sbjct: 185 LLLVIGPPGTGKTRVIAKIAKEFSDRGERVLITS 218 >gi|26251284|ref|NP_757324.1| putative ABC transporter ATP-binding protein [Escherichia coli CFT073] gi|91214109|ref|YP_544095.1| putative ABC transporter ATP-binding protein [Escherichia coli UTI89] gi|110644830|ref|YP_672560.1| putative ABC transporter ATP-binding protein [Escherichia coli 536] gi|117626751|ref|YP_860074.1| putative ABC transporter ATP-binding protein [Escherichia coli APEC O1] gi|170683563|ref|YP_001746848.1| putative ABC transporter ATP-binding protein [Escherichia coli SMS-3-5] gi|191173202|ref|ZP_03034734.1| ABC transporter, ATP-binding protein [Escherichia coli F11] gi|218561624|ref|YP_002394537.1| ABC transporter ATP-binding protein [Escherichia coli S88] gi|218692781|ref|YP_002400993.1| putative ABC transporter ATP-binding protein [Escherichia coli ED1a] gi|331661026|ref|ZP_08361958.1| ABC transporter, ATP-binding protein YjiK [Escherichia coli TA206] gi|26111717|gb|AAN83898.1|AE016772_76 ABC transporter ATP-binding protein yjjK [Escherichia coli CFT073] gi|91075683|gb|ABE10564.1| ABC transporter ATP-binding protein YjjK [Escherichia coli UTI89] gi|110346422|gb|ABG72659.1| ABC transporter ATP-binding protein YjjK [Escherichia coli 536] gi|115515875|gb|ABJ03950.1| ABC transporter ATP-binding protein YjjK [Escherichia coli APEC O1] gi|170521281|gb|ACB19459.1| ABC transporter, ATP-binding protein [Escherichia coli SMS-3-5] gi|190906587|gb|EDV66194.1| ABC transporter, ATP-binding protein [Escherichia coli F11] gi|218368393|emb|CAR06213.1| fused putative transporter subunits of ABC superfamily: ATP-binding components [Escherichia coli S88] gi|218430345|emb|CAV18220.1| fused putative transporter subunits of ABC superfamily: ATP-binding components [Escherichia coli ED1a] gi|222036134|emb|CAP78879.1| Uncharacterized ABC transporter ATP-binding protein yjjK [Escherichia coli LF82] gi|294493398|gb|ADE92154.1| ABC transporter, ATP-binding protein [Escherichia coli IHE3034] gi|307556626|gb|ADN49401.1| ABC transporter ATP-binding protein YjjK [Escherichia coli ABU 83972] gi|307629563|gb|ADN73867.1| putative ABC transporter ATP-binding protein [Escherichia coli UM146] gi|312949023|gb|ADR29850.1| putative ABC transporter ATP-binding protein [Escherichia coli O83:H1 str. NRG 857C] gi|320195345|gb|EFW69973.1| ABC transporter, ATP-binding protein [Escherichia coli WV_060327] gi|323950521|gb|EGB46399.1| ABC transporter [Escherichia coli H252] gi|323964765|gb|EGB60233.1| ABC transporter [Escherichia coli M863] gi|330909836|gb|EGH38346.1| ABC transporter, ATP-binding protein [Escherichia coli AA86] gi|331052068|gb|EGI24107.1| ABC transporter, ATP-binding protein YjiK [Escherichia coli TA206] Length = 555 Score = 35.8 bits (81), Expect = 9.9, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 94/229 (41%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ TKG S ++ S+ R E +L I G Sbjct: 264 ARRKSIEKELEWVRQGTKGRQSKGKARLARFEELNSTEYQK---RNETNELFIPP--GPR 318 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 + K++E VS R Y LI + + K ++ ++G NG Sbjct: 319 LGDKVLE----------VSNLRKSYGDRLLIDSLSFSIPKG---------AIVGIIGPNG 359 Query: 122 VGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 GK+T+ +S ++ D+G V LA+ D FR + + +W + S +IG Sbjct: 360 AGKSTLFRMISGQEQPDSGTITLGETVKLASVDQFRDSMDNSKTVW-EEVSGGLDIMKIG 418 Query: 176 -SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 ++ + AY FK Q K+V L GRLH +L G G M+ Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466 >gi|83592764|ref|YP_426516.1| cobyrinic acid a,c-diamide synthase [Rhodospirillum rubrum ATCC 11170] gi|6226573|sp|P31897|COOC_RHORU RecName: Full=Carbon monoxide dehydrogenase accessory protein CooC gi|1498749|gb|AAC45124.1| CooC [Rhodospirillum rubrum] gi|83575678|gb|ABC22229.1| Cobyrinic acid a,c-diamide synthase [Rhodospirillum rubrum ATCC 11170] Length = 263 Score = 35.8 bits (81), Expect = 9.9, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167 I V G GVGK+T++G L++ +SD G +VM D + A + + A+R SA Sbjct: 3 IAVTGKGGVGKSTIVGMLARALSDEGWRVMAIDADPDANLA-SAIGVPAERLSA 55 >gi|323190330|gb|EFZ75606.1| ABC transporter family protein [Escherichia coli RN587/1] Length = 548 Score = 35.8 bits (81), Expect = 9.9, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 94/229 (41%), Gaps = 37/229 (16%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +K + L W+R+ TKG S ++ S+ R E +L I G Sbjct: 257 ARRKSIEKELEWVRQGTKGRQSKGKARLARFEELNSTEYQK---RNETNELFIPP--GPR 311 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 + K++E VS R Y LI + + K ++ ++G NG Sbjct: 312 LGDKVLE----------VSNLRKSYGDRLLIDSLSFSIPKG---------AIVGIIGPNG 352 Query: 122 VGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175 GK+T+ +S ++ D+G V LA+ D FR + + +W + S +IG Sbjct: 353 AGKSTLFRMISGQEQPDSGTITLGETVKLASVDQFRDSMDNSKTVW-EEVSGGLDIMKIG 411 Query: 176 -SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219 ++ + AY FK Q K+V L GRLH +L G G M+ Sbjct: 412 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 459 >gi|159028098|emb|CAO87175.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 343 Score = 35.8 bits (81), Expect = 9.9, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 15/134 (11%) Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169 V ++ G G GKTT++ + + GLKV + + F ID QL + D + Sbjct: 22 VTIITGFLGSGKTTLLNHILD--NKEGLKVAVLVNE-FGDINIDSQLLVSIDEDMVELSN 78 Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227 +C I Y+ ++ VD LII+T G I++ + ++ L RLD Sbjct: 79 GCICCTINDSLIETVYQVLEKEIP--VDYLIIETTGLADPLPIILTFLATELKYLTRLD- 135 Query: 228 HAPHSVLQVLDATT 241 S++ ++D+ T Sbjct: 136 ----SIITLVDSET 145 Searching..................................................done Results from round 2 >gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040386|gb|ACT57182.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 321 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 321/321 (100%), Positives = 321/321 (100%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV Sbjct: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN Sbjct: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA Sbjct: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT Sbjct: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP Sbjct: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 Query: 301 FVAKDFSAVITGCLDYGEEKI 321 FVAKDFSAVITGCLDYGEEKI Sbjct: 301 FVAKDFSAVITGCLDYGEEKI 321 >gi|315121874|ref|YP_004062363.1| cell division protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495276|gb|ADR51875.1| cell division protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 315 Score = 356 bits (913), Expect = 3e-96, Method: Composition-based stats. Identities = 254/314 (80%), Positives = 280/314 (89%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 S+S SWI+K KGFASTSLKLKEGI +ISS+RLDD VR+ELEDLLIR+DIG+ AQ+IV Sbjct: 2 SKSFSWIQKKAKGFASTSLKLKEGIAAVISSKRLDDSVRDELEDLLIRADIGLEAAQEIV 61 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 +L+ KRY KDVS+Q VL DVSE I+K+LMP+SK F+ DFSHRPHVILVVGVNG GKTT Sbjct: 62 GDLVAKRYNKDVSIQCVLQDVSEKIYKILMPISKSFDLDFSHRPHVILVVGVNGAGKTTA 121 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKLSKKMSD+GLK+MLAAGDTFRSAA+DQLKIWADRTS+DFV SEIGSDAAALAYEAF+ Sbjct: 122 IGKLSKKMSDSGLKIMLAAGDTFRSAAVDQLKIWADRTSSDFVGSEIGSDAAALAYEAFR 181 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 QAQAK VDVLIIDTAGRLHNNS LMAGIGKMIRVLKRLDP APHSVLQVLDAT GQNALR Sbjct: 182 QAQAKNVDVLIIDTAGRLHNNSALMAGIGKMIRVLKRLDPDAPHSVLQVLDATVGQNALR 241 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 QVE+F +VAGTTGLIMTK+DGTARGG L+ I + HKIPVYFLG GEGINDLEPFVAKDFS Sbjct: 242 QVELFQSVAGTTGLIMTKLDGTARGGILVSIAIKHKIPVYFLGTGEGINDLEPFVAKDFS 301 Query: 308 AVITGCLDYGEEKI 321 ITG DY E+KI Sbjct: 302 TAITGYFDYNEKKI 315 >gi|227823743|ref|YP_002827716.1| signal recognition particle-docking protein FtsY [Sinorhizobium fredii NGR234] gi|227342745|gb|ACP26963.1| signal recognition particle-docking protein FtsY [Sinorhizobium fredii NGR234] Length = 532 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 184/310 (59%), Positives = 235/310 (75%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 + LSW ++L G A TS +L I + + R+LD+ E+LEDLLI++D+GV A Sbjct: 221 PASQPKLSWYQRLRHGLARTSSQLTGQIASLFTKRKLDEATLEDLEDLLIQADLGVETAM 280 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 +I + L ++RY KDV+ + V ++ I K+L P+++P D S +PHVILVVGVNG GK Sbjct: 281 RITDTLASERYGKDVTGEDVSRIMAGEIAKVLAPVARPLELDLSQKPHVILVVGVNGTGK 340 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT +D V S++G+DAA LAYE Sbjct: 341 TTTIGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTKSDIVASKLGADAAGLAYE 400 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 AF+ A+ KK DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQN Sbjct: 401 AFQLAREKKSDVLIIDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQN 460 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 AL+QVE+F VAG +GLIMTK+DGTARGG L+ I HK+PVYF+GVGEGI+DLEPF AK Sbjct: 461 ALQQVEIFRNVAGVSGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGIDDLEPFEAK 520 Query: 305 DFSAVITGCL 314 DF+ I G Sbjct: 521 DFAEAIAGVG 530 >gi|86359533|ref|YP_471425.1| cell division protein [Rhizobium etli CFN 42] gi|86283635|gb|ABC92698.1| cell division protein [Rhizobium etli CFN 42] Length = 522 Score = 352 bits (904), Expect = 3e-95, Method: Composition-based stats. Identities = 185/314 (58%), Positives = 242/314 (77%), Gaps = 1/314 (0%) Query: 1 MSNQKVASE-SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59 + Q +A + LSW ++L G A TS +L IT + + R+LDD ++LEDLLI++D+G Sbjct: 207 IEPQPIAPQPKLSWFQRLRNGLARTSSQLTNQITALFTKRKLDDETLQDLEDLLIQADLG 266 Query: 60 VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 V A ++ + L ++RY KDV+ + V ++ I K+L P++KP D SH+PHVILVVGV Sbjct: 267 VETALRVTDTLASERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGV 326 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NG GKTT IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT+++FV +++G+DAA Sbjct: 327 NGTGKTTTIGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTNSEFVGTKLGADAA 386 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 LAY+AF+QA+AKK DVLI+DTAGRL N + LMA + K++RVL RLDP APH+VLQ LDA Sbjct: 387 GLAYDAFEQAKAKKCDVLIVDTAGRLQNKAELMAELEKIVRVLGRLDPDAPHTVLQTLDA 446 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNAL QVE+F VAG GLIMTK+DGTARGG L+ I HK+PVYF+GVGE ++DLE Sbjct: 447 TTGQNALSQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEAVDDLE 506 Query: 300 PFVAKDFSAVITGC 313 PF A+DF+ I G Sbjct: 507 PFEAEDFARAIAGL 520 >gi|118591327|ref|ZP_01548725.1| GTP-binding signal recognition particle (SRP54) G-domain:ATP/GTP-binding site motif A (P-loop):AAA [Stappia aggregata IAM 12614] gi|118435999|gb|EAV42642.1| GTP-binding signal recognition particle (SRP54) G-domain:ATP/GTP-binding site motif A (P-loop):AAA [Stappia aggregata IAM 12614] Length = 474 Score = 351 bits (902), Expect = 7e-95, Method: Composition-based stats. Identities = 165/304 (54%), Positives = 225/304 (74%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 LSW ++L G + +S L EGI+ I + R+LD + EELED+LI++D+GV A I + Sbjct: 170 KLSWFQRLKNGLSRSSASLTEGISSIFTKRKLDASMLEELEDILIQADLGVDTAMAITDR 229 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L RY K++S + V ++E + K+L P+++P + D +PHV+L+VGVNG GKTT IG Sbjct: 230 LSDGRYNKEISPEEVRAILAEEVEKVLAPVARPLDLDTGKKPHVVLMVGVNGTGKTTTIG 289 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KLS+K+ G VMLAAGDTFR+AA++QLKIW +RT A+ + + G+DAA LAY+A K+A Sbjct: 290 KLSQKLRSEGKTVMLAAGDTFRAAAVEQLKIWGERTGAEVIARDTGADAAGLAYDAMKEA 349 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +AK VDVL++DTAGRL N + LM + K+IRV+K+ DP APH+VL LDATTGQNAL QV Sbjct: 350 KAKGVDVLLVDTAGRLQNKAELMDELEKVIRVIKKHDPEAPHTVLLTLDATTGQNALNQV 409 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E+F VAG TGL+MTK+DGTARGG L+ I H +PV+F+GVGEG+ DLEPF A++F++ Sbjct: 410 EIFGKVAGVTGLVMTKLDGTARGGILVAIAAKHAMPVHFIGVGEGVADLEPFSAREFASA 469 Query: 310 ITGC 313 I G Sbjct: 470 IAGM 473 >gi|327190191|gb|EGE57296.1| cell division protein [Rhizobium etli CNPAF512] Length = 524 Score = 351 bits (901), Expect = 8e-95, Method: Composition-based stats. Identities = 184/314 (58%), Positives = 242/314 (77%), Gaps = 1/314 (0%) Query: 1 MSNQKVASE-SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59 + Q +A + LSW ++L G A TS +L IT + + R+LDD ++LEDLLI++D+G Sbjct: 209 VEPQPIAPQPKLSWFQRLRNGLARTSSQLTNQITALFTKRKLDDETLQDLEDLLIQADLG 268 Query: 60 VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 V A ++ + L ++RY KDV+ + V ++ I K+L P++K D SH+PHVILVVGV Sbjct: 269 VETALRVTDTLASERYGKDVTGEDVSRIMASEIAKVLKPVAKSLQLDLSHKPHVILVVGV 328 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NG GKTT IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT+++FV +++G+DAA Sbjct: 329 NGTGKTTTIGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTNSEFVGTKLGADAA 388 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 LAY+AF+QA+AKK DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDA Sbjct: 389 GLAYDAFEQAKAKKCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDA 448 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNAL QVE+F VAG GLIMTK+DGTARGG L+ I HK+PVYF+GVGEG++DLE Sbjct: 449 TTGQNALSQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVDDLE 508 Query: 300 PFVAKDFSAVITGC 313 PF A+DF+ I G Sbjct: 509 PFEAEDFAHAIAGL 522 >gi|209551317|ref|YP_002283234.1| signal recognition particle-docking protein FtsY [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537073|gb|ACI57008.1| signal recognition particle-docking protein FtsY [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 528 Score = 351 bits (901), Expect = 8e-95, Method: Composition-based stats. Identities = 182/308 (59%), Positives = 238/308 (77%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 V LSW ++L G A TS +L IT + + R+LDD ++LEDLLI++D+GV A + Sbjct: 219 VPQPKLSWFQRLRNGLARTSSQLTGQITALFTKRKLDDETLQDLEDLLIQADLGVETALR 278 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 + + L ++RY KDV+ + V ++ I K+L P++KP D SH+PHVILVVGVNG GKT Sbjct: 279 VTDTLASERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGVNGTGKT 338 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT+++F+ +++G+DAA LAY+A Sbjct: 339 TTIGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTNSEFIGTKLGADAAGLAYDA 398 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 F+QA+A+K DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNA Sbjct: 399 FEQAKARKCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNA 458 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QVE+F VAG GLIMTK+DGTARGG L+ I HK+PVYF+GVGEG+ DLEPF A+D Sbjct: 459 LSQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVEDLEPFEAED 518 Query: 306 FSAVITGC 313 F+ I G Sbjct: 519 FAHAIAGL 526 >gi|237802351|ref|ZP_04590812.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025208|gb|EGI05264.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. oryzae str. 1_6] Length = 514 Score = 351 bits (901), Expect = 9e-95, Method: Composition-based stats. Identities = 128/312 (41%), Positives = 194/312 (62%), Gaps = 2/312 (0%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGV 60 Q+ + + + +L +G + TS + EG+ + ++ +DD + EE+E L+ +D+GV Sbjct: 197 PAQESEAGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGV 256 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 I++ L K K ++ + LY + + ML P+ +P H+P VILVVGV Sbjct: 257 EATSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKSEHKPFVILVVGV 316 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NG GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A Sbjct: 317 NGAGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSA 376 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA Sbjct: 377 SVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDA 436 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQNA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL Sbjct: 437 GTGQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLR 496 Query: 300 PFVAKDFSAVIT 311 F A+ F + Sbjct: 497 TFEAEPFVQALF 508 >gi|241206753|ref|YP_002977849.1| signal recognition particle-docking protein FtsY [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860643|gb|ACS58310.1| signal recognition particle-docking protein FtsY [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 533 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 183/307 (59%), Positives = 237/307 (77%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 LSW ++L G A TS +L IT + + R+LDD ++LEDLLI++D+GV A ++ Sbjct: 226 QPKLSWFQRLRNGLARTSSQLTGQITALFTKRKLDDETLQDLEDLLIQADLGVETAMRVT 285 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 + L ++RY KDV+ + V ++ I K+L P++KP D SH+PHVILVVGVNG GKTT Sbjct: 286 DTLASERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGVNGTGKTTT 345 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWADRT+++F+ +++G+DAA LAY+AF+ Sbjct: 346 IGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWADRTNSEFIGTKLGADAAGLAYDAFE 405 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 QA+AKK DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNAL Sbjct: 406 QAKAKKCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNALS 465 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 QVE+F VAG GLIMTK+DGTARGG L+ I HK+PVYF+GVGEG+ DLEPF A+DF+ Sbjct: 466 QVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVEDLEPFEAEDFA 525 Query: 308 AVITGCL 314 I G Sbjct: 526 HAIAGLG 532 >gi|116254270|ref|YP_770108.1| cell division protein [Rhizobium leguminosarum bv. viciae 3841] gi|115258918|emb|CAK10027.1| putative SRP receptor [Rhizobium leguminosarum bv. viciae 3841] Length = 531 Score = 350 bits (899), Expect = 1e-94, Method: Composition-based stats. Identities = 182/307 (59%), Positives = 236/307 (76%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 LSW ++L G A TS +L IT + + R+LDD ++LEDLLI++D+GV A ++ Sbjct: 224 QPKLSWFQRLRNGLARTSSQLTGQITALFTKRKLDDETLQDLEDLLIQADLGVETAMRVT 283 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 + L ++RY KDV+ + V ++ I K+L P+++P D SH+PHVILVVGVNG GKTT Sbjct: 284 DTLASERYGKDVTGEDVSRIMASEIAKVLKPVARPLQLDLSHKPHVILVVGVNGTGKTTT 343 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWADRT ++F+ +++G+DAA LAY+AF+ Sbjct: 344 IGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWADRTKSEFIGTKLGADAAGLAYDAFE 403 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 QA+AKK DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNAL Sbjct: 404 QAKAKKCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNALS 463 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 QVE+F VAG GLIMTK+DGTARGG L+ I HK+PVYF+GVGEG+ DLEPF A+DF+ Sbjct: 464 QVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVEDLEPFEAEDFA 523 Query: 308 AVITGCL 314 I G Sbjct: 524 HAIAGLG 530 >gi|190893800|ref|YP_001980342.1| cell division protein [Rhizobium etli CIAT 652] gi|190699079|gb|ACE93164.1| cell division protein [Rhizobium etli CIAT 652] Length = 520 Score = 350 bits (899), Expect = 1e-94, Method: Composition-based stats. Identities = 184/314 (58%), Positives = 243/314 (77%), Gaps = 1/314 (0%) Query: 1 MSNQKVASE-SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59 + Q +A + LSW ++L G A TS +L IT + + R+LDD ++LEDLLI++D+G Sbjct: 205 VEPQPIAPQPKLSWFQRLRNGLARTSSQLTGQITALFTKRKLDDETLQDLEDLLIQADLG 264 Query: 60 VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 V A ++ + L ++RY KDV+ + V ++ I K+L P++KP D SH+PHVILVVGV Sbjct: 265 VETALRVTDTLASERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGV 324 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NG GKTT IGKL+ K+S AGLKVM+AAGDTFR+AAI+QLKIWA+RT+++FV +++G+DAA Sbjct: 325 NGTGKTTTIGKLAAKLSGAGLKVMVAAGDTFRAAAIEQLKIWAERTNSEFVGTKLGADAA 384 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 LAY+AF+QA+AKK DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDA Sbjct: 385 GLAYDAFEQAKAKKCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDA 444 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNAL QVE+F VAG GLIMTK+DGTARGG L+ I HK+PVYF+GVGEG++DLE Sbjct: 445 TTGQNALSQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVDDLE 504 Query: 300 PFVAKDFSAVITGC 313 PF A+DF+ I G Sbjct: 505 PFEAEDFAHAIAGL 518 >gi|254504835|ref|ZP_05116986.1| signal recognition particle-docking protein FtsY, putative [Labrenzia alexandrii DFL-11] gi|222440906|gb|EEE47585.1| signal recognition particle-docking protein FtsY, putative [Labrenzia alexandrii DFL-11] Length = 465 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 169/308 (54%), Positives = 226/308 (73%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 V E LSW ++L KG + +S L +GI+ I + R+LD + EELED+LI++D+GV A Sbjct: 157 VEEEKLSWFQRLKKGLSRSSSALTDGISSIFTKRKLDAAMLEELEDILIQADLGVDTAMA 216 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 I E L RY K++S + V +SE + K+L +++P + + +PHV+L+VGVNG GKT Sbjct: 217 ITERLSDGRYDKEISPEEVREILSEEVEKVLASVAEPLDLNSGKKPHVVLMVGVNGTGKT 276 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKLSKK+ + G VMLAAGDTFR+AA++QLKIW +RT A+ + + G+DAA LA++A Sbjct: 277 TTIGKLSKKLREEGKTVMLAAGDTFRAAAVEQLKIWGERTGAEVIARDTGADAAGLAFDA 336 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 K+A K+VDVL+IDTAGRL N + LM + K+IRV+K+ DP APH+ L LDATTGQNA Sbjct: 337 MKEATEKQVDVLLIDTAGRLQNKAELMDELEKVIRVIKKHDPDAPHTCLLTLDATTGQNA 396 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QVE+F VAG TGL+MTK+DGTARGG L+ I H +PV+F+GVGEG+ DLEPF AKD Sbjct: 397 LNQVEIFGKVAGVTGLVMTKLDGTARGGILVAIAAKHGLPVHFIGVGEGVEDLEPFSAKD 456 Query: 306 FSAVITGC 313 FS+ I G Sbjct: 457 FSSAIAGL 464 >gi|15966990|ref|NP_387343.1| putative cell division protein [Sinorhizobium meliloti 1021] gi|307302458|ref|ZP_07582215.1| signal recognition particle-docking protein FtsY [Sinorhizobium meliloti BL225C] gi|307316212|ref|ZP_07595656.1| signal recognition particle-docking protein FtsY [Sinorhizobium meliloti AK83] gi|15076263|emb|CAC47816.1| Putative cell division protein [Sinorhizobium meliloti 1021] gi|306898052|gb|EFN28794.1| signal recognition particle-docking protein FtsY [Sinorhizobium meliloti AK83] gi|306903128|gb|EFN33718.1| signal recognition particle-docking protein FtsY [Sinorhizobium meliloti BL225C] Length = 548 Score = 349 bits (897), Expect = 2e-94, Method: Composition-based stats. Identities = 181/308 (58%), Positives = 236/308 (76%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 L+W ++L G A TS +L I + + R+LD+ ++LEDLLI++D+GV A Sbjct: 237 PAPQAKLNWYQRLRLGLARTSSQLTGQIASLFTKRKLDEATLQDLEDLLIQADLGVETAM 296 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 +I + L ++RY KDVS + V ++ I K+L P+++P D SH+PHVILVVGVNG GK Sbjct: 297 RITDTLASERYGKDVSGEDVSRIMAGEITKVLAPVARPLELDLSHKPHVILVVGVNGTGK 356 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT ++ V S++G+DAA LAYE Sbjct: 357 TTTIGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTKSEIVSSKLGADAAGLAYE 416 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 AF++A+ +K DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQN Sbjct: 417 AFQRAREQKADVLIIDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQN 476 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 AL+QVE+F VAG +GLIMTK+DGTARGG L+ I HK+PVYF+GVGEGI+DLEPF AK Sbjct: 477 ALQQVEIFRNVAGVSGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGIDDLEPFEAK 536 Query: 305 DFSAVITG 312 +F+ I G Sbjct: 537 EFAEAIAG 544 >gi|150398285|ref|YP_001328752.1| signal recognition particle-docking protein FtsY [Sinorhizobium medicae WSM419] gi|150029800|gb|ABR61917.1| signal recognition particle-docking protein FtsY [Sinorhizobium medicae WSM419] Length = 520 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 181/308 (58%), Positives = 237/308 (76%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 A L+W ++L G A TS +L I + + R+LD+ ++LEDLLI++D+GV A Sbjct: 209 PAAQPKLNWYQRLRLGLARTSSQLTGQIASLFTKRKLDEATLQDLEDLLIQADLGVETAM 268 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 +I + L ++RY KDVS + V ++ I K+L P++KP D +H+PHVILVVGVNG GK Sbjct: 269 RITDALASERYGKDVSGEDVSRIMAGEITKVLAPVAKPLELDLNHKPHVILVVGVNGTGK 328 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+ K+S AGLKVM+AAGDTFR+AAI+QLKIWA+RT ++ V S++G+DAA LAYE Sbjct: 329 TTTIGKLAAKLSGAGLKVMMAAGDTFRAAAIEQLKIWAERTRSEIVSSKLGADAAGLAYE 388 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 AF++A+ +K DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQN Sbjct: 389 AFQRAREQKADVLIIDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQN 448 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 AL+QVE+F VAG +GLIMTK+DGTARGG L+ I HK+PVYF+GVGEG++DLEPF AK Sbjct: 449 ALQQVEIFRNVAGVSGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVDDLEPFEAK 508 Query: 305 DFSAVITG 312 DF+ I G Sbjct: 509 DFAEAIAG 516 >gi|222087518|ref|YP_002546055.1| cell division protein [Agrobacterium radiobacter K84] gi|221724966|gb|ACM28122.1| cell division protein [Agrobacterium radiobacter K84] Length = 505 Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats. Identities = 178/312 (57%), Positives = 238/312 (76%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + + LSW ++L G A TS +L I + + R+LDD ++LEDLLI++D+GV Sbjct: 188 PAPEAPKQKLSWFQRLRAGLARTSSQLTGQIAALFTKRKLDDQTLQDLEDLLIQADLGVE 247 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 A ++ + L ++RY KDV+ + V +++ I K+L P++KP D SH+PHVIL+VGVNG Sbjct: 248 TAMRVTDTLASERYGKDVTGEDVSRIMAQEIAKVLKPVAKPLQLDLSHKPHVILIVGVNG 307 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+ K+S AGLKVM+AAGDTFR+AAI+QLKIWADRT ++F+ +++G+DAA L Sbjct: 308 TGKTTTIGKLAAKLSGAGLKVMVAAGDTFRAAAIEQLKIWADRTKSEFIGTKLGADAAGL 367 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 A++AF+QA+A K DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATT Sbjct: 368 AFDAFQQAKANKSDVLIIDTAGRLQNKTELMAELEKIVRVLGKLDPDAPHTVLQTLDATT 427 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL QVE+F VAG GLIMTK+DGTARGG L+ I HK+PVYF+GVGEG++DLEPF Sbjct: 428 GQNALNQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVDDLEPF 487 Query: 302 VAKDFSAVITGC 313 A++F+ I G Sbjct: 488 EAEEFAQAIAGI 499 >gi|307943541|ref|ZP_07658885.1| signal recognition particle-docking protein FtsY [Roseibium sp. TrichSKD4] gi|307773171|gb|EFO32388.1| signal recognition particle-docking protein FtsY [Roseibium sp. TrichSKD4] Length = 371 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 170/313 (54%), Positives = 232/313 (74%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 +++ A LSW +KL KG + +S L +GI+ I + R+LD + EELED+LI++D+GV Sbjct: 58 VADSSEAEPKLSWFQKLKKGLSRSSSALTDGISSIFTKRKLDASMLEELEDILIQADLGV 117 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 A I + L RY K+++ V +SE + K+L P+++P N + +PHV+L+VGVN Sbjct: 118 DTAMAITDRLSDGRYDKEIAPDEVRAILSEEVEKVLAPVAQPLNLETGKKPHVVLMVGVN 177 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKLS+K++ G KVMLAAGDTFR+AA++QLKIW +RT A+ + + G+DAA Sbjct: 178 GTGKTTTIGKLSQKLAAEGKKVMLAAGDTFRAAAVEQLKIWGERTGAEVIARDTGADAAG 237 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LA++A K+A AK VDVL+IDTAGRL N + LM + K+IRV+K+ DP APH+VL LDAT Sbjct: 238 LAFDAMKEAMAKDVDVLLIDTAGRLQNKAELMDELEKVIRVIKKHDPEAPHTVLLTLDAT 297 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNAL QVE+F VAG TGL+MTK+DGTARGG L+ I H++PV+F+GVGEG++DLEP Sbjct: 298 TGQNALNQVEIFGKVAGVTGLVMTKLDGTARGGILVAIAAKHQMPVHFIGVGEGVDDLEP 357 Query: 301 FVAKDFSAVITGC 313 F AKDF++ I G Sbjct: 358 FSAKDFASAIAGL 370 >gi|153008260|ref|YP_001369475.1| signal recognition particle-docking protein FtsY [Ochrobactrum anthropi ATCC 49188] gi|151560148|gb|ABS13646.1| signal recognition particle-docking protein FtsY [Ochrobactrum anthropi ATCC 49188] Length = 494 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 168/309 (54%), Positives = 224/309 (72%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + LSW +L +G +S L E I I + R+LDD ++LED+LI++D+G+ A Sbjct: 184 EAAPQPKLSWFERLRRGLLRSSNSLSESIGGIFTKRKLDDDTLQDLEDVLIQADLGLETA 243 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 ++ + L + RY KDV+ + V + I K+L P++KP D SH+PHVILVVGVNG G Sbjct: 244 MRVTDALASGRYGKDVTGEEVRTIMGAEIEKVLGPVAKPLELDLSHKPHVILVVGVNGTG 303 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY Sbjct: 304 KTTTIGKLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAY 363 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A+++A+ DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQ Sbjct: 364 DAWEKAKEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQ 423 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NAL QVE+F +AG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEG++DLEPF A Sbjct: 424 NALNQVEIFKNIAGVNGLVMTKLDGTARGGILVAISAKHKLPIYFIGVGEGVDDLEPFAA 483 Query: 304 KDFSAVITG 312 KDF+ I G Sbjct: 484 KDFARAIAG 492 >gi|319780718|ref|YP_004140194.1| signal recognition particle-docking protein FtsY [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166606|gb|ADV10144.1| signal recognition particle-docking protein FtsY [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 601 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 164/306 (53%), Positives = 222/306 (72%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 + SW +++ G A +S +L I + + R+LD+ ++LED+LIR+D+G+ A ++ Sbjct: 294 PAPRRSWFQRMKDGLARSSKELTGNIAGVFTKRKLDEETLQDLEDVLIRADLGMETALRV 353 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 + L RY KDVS V ++ + K+L ++ P D SH+PHVILVVGVNG GKTT Sbjct: 354 TDALAASRYGKDVSDTEVRAIMAAEVEKVLTHVAMPLELDLSHKPHVILVVGVNGTGKTT 413 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+ K++D GL VMLAAGDTFR+AAI+QLKIW +RT + + S++G+DAA LAY+AF Sbjct: 414 TIGKLAAKLTDGGLSVMLAAGDTFRAAAIEQLKIWGERTKSPVIASKLGADAAGLAYDAF 473 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 ++A+ DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ +DATTGQNAL Sbjct: 474 ERAKEAGSDVLIIDTAGRLQNKTELMAELEKIVRVLGKLDPEAPHTVLQTVDATTGQNAL 533 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QVE+F VAG GL+MTK+DGTARGG L+ I HK+PVYF+GVGE ++DLEPF A +F Sbjct: 534 NQVEIFRNVAGVNGLVMTKLDGTARGGILVAIAAKHKLPVYFIGVGEQVDDLEPFSASEF 593 Query: 307 SAVITG 312 + I G Sbjct: 594 ARAIAG 599 >gi|325294064|ref|YP_004279928.1| cell division particle [Agrobacterium sp. H13-3] gi|325061917|gb|ADY65608.1| cell division particle [Agrobacterium sp. H13-3] Length = 476 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 182/308 (59%), Positives = 237/308 (76%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 + LSW ++L G A TS +L I+ + + R+LD+ +ELEDLLI+SD+GV A Sbjct: 168 EAPQPKLSWFQRLRAGLARTSSQLTTQISALFTKRKLDEDTLDELEDLLIQSDLGVETAM 227 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 +I L ++RY KDVS + V ++ I K+L P++KP D SH+PHVILVVGVNG GK Sbjct: 228 RITGALSSERYGKDVSGEDVARIMAGEITKVLKPVAKPLELDLSHKPHVILVVGVNGTGK 287 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+ K+S +GLKVMLAAGDTFR+AAI+QLKIWADRT + F+ +++G+DA+ LAY+ Sbjct: 288 TTTIGKLASKLSGSGLKVMLAAGDTFRAAAIEQLKIWADRTGSQFIGTKLGADASGLAYD 347 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A++QA+A+K DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQN Sbjct: 348 AYEQARAQKSDVLIIDTAGRLQNKTELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQN 407 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 AL QVE+F VAG +GLIMTK+DGTARGG L+ I HK+PVYF+GVGEG++DLEPF A+ Sbjct: 408 ALNQVEIFRNVAGVSGLIMTKLDGTARGGILVAIAAKHKLPVYFIGVGEGVDDLEPFEAE 467 Query: 305 DFSAVITG 312 DF+ I G Sbjct: 468 DFAKAIAG 475 >gi|320326373|gb|EFW82426.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. glycinea str. B076] Length = 498 Score = 346 bits (887), Expect = 3e-93, Method: Composition-based stats. Identities = 128/310 (41%), Positives = 193/310 (62%), Gaps = 2/310 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62 Q+ + + + +L +G + TS + EG+ + ++ +DD + EE+E L+ +D+GV Sbjct: 183 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 242 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 I+ L K K ++ + LY + + ML P+ +P H+P VILVVGVNG Sbjct: 243 TSVIINSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKVEHKPFVILVVGVNG 302 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 303 AGKTTTIGKLAKKLQLGGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 362 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA T Sbjct: 363 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 422 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F Sbjct: 423 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 482 Query: 302 VAKDFSAVIT 311 A+ F + Sbjct: 483 EAEPFVQALF 492 >gi|320331637|gb|EFW87575.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. glycinea str. race 4] gi|330872359|gb|EGH06508.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. glycinea str. race 4] Length = 500 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 128/310 (41%), Positives = 193/310 (62%), Gaps = 2/310 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62 Q+ + + + +L +G + TS + EG+ + ++ +DD + EE+E L+ +D+GV Sbjct: 185 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 244 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 I+ L K K ++ + LY + + ML P+ +P H+P VILVVGVNG Sbjct: 245 TSVIINSLTRKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKVEHKPFVILVVGVNG 304 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 305 AGKTTTIGKLAKKLQLGGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 364 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA T Sbjct: 365 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 424 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F Sbjct: 425 GQNAINQAKQFNQTVMLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 484 Query: 302 VAKDFSAVIT 311 A+ F + Sbjct: 485 EAEPFVQALF 494 >gi|330957085|gb|EGH57345.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. maculicola str. ES4326] Length = 506 Score = 345 bits (886), Expect = 4e-93, Method: Composition-based stats. Identities = 128/310 (41%), Positives = 194/310 (62%), Gaps = 2/310 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62 Q+ + + + +L +G + TS + EG+ + ++ +DD + EE+E L+ +D+GV Sbjct: 191 QEPENAKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 250 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 I++ L K K ++ + LY + + ML P+ +P H+P VILVVGVNG Sbjct: 251 TSVIIQSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNG 310 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 311 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 370 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA T Sbjct: 371 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 430 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F Sbjct: 431 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 490 Query: 302 VAKDFSAVIT 311 A+ F + Sbjct: 491 EAEPFVQALF 500 >gi|239833060|ref|ZP_04681389.1| signal recognition particle-docking protein FtsY [Ochrobactrum intermedium LMG 3301] gi|239825327|gb|EEQ96895.1| signal recognition particle-docking protein FtsY [Ochrobactrum intermedium LMG 3301] Length = 490 Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats. Identities = 168/309 (54%), Positives = 224/309 (72%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + LSW +L +G +S L E I I + R+LDD ++LED+LI++D+G+ A Sbjct: 180 EAAPEPKLSWFERLRRGLLRSSNSLSESIGGIFTKRKLDDDTLQDLEDVLIQADLGLETA 239 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 ++ + L + RY KDV+ + V + I K+L P++KP D SH+PHVILVVGVNG G Sbjct: 240 MRVTDALASGRYGKDVTGEEVRTIMGAEIEKVLGPVAKPLELDLSHKPHVILVVGVNGTG 299 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY Sbjct: 300 KTTTIGKLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAY 359 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A+++A+ DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQ Sbjct: 360 DAWEKAKEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQ 419 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NAL QVE+F +AG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEG++DLEPF A Sbjct: 420 NALNQVEIFKNIAGVNGLVMTKLDGTARGGILVAISAKHKLPIYFIGVGEGVDDLEPFAA 479 Query: 304 KDFSAVITG 312 KDF+ I G Sbjct: 480 KDFARAIAG 488 >gi|328541784|ref|YP_004301893.1| Cell division transporter substrate-binding protein FtsY (Signal recognition particle receptor) [polymorphum gilvum SL003B-26A1] gi|326411536|gb|ADZ68599.1| Cell division transporter substrate-binding protein FtsY (Signal recognition particle receptor) [Polymorphum gilvum SL003B-26A1] Length = 419 Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats. Identities = 166/312 (53%), Positives = 227/312 (72%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + A+ LSW +L +G + +S L EGI+ I + RRLD + +ELED+LI++D+GV Sbjct: 107 APDPAAAPRLSWFGRLKQGLSRSSSALTEGISSIFTKRRLDAAMLDELEDVLIQADLGVD 166 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 A I E L R+ K++S + V ++E + K+L P+++P + D HRPHV+L+VGVNG Sbjct: 167 TATAITERLSVGRFDKEISAEEVRAVLAEEVEKVLAPVARPLDLDGEHRPHVVLMVGVNG 226 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKLS K++ G VMLAAGDTFR+AA++QLKIW RT A+ V + G+DAA L Sbjct: 227 TGKTTTIGKLSSKLAAEGRTVMLAAGDTFRAAAVEQLKIWGSRTGAEVVARDTGADAAGL 286 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 A++A + A+ K VDVL++DTAGRL N + LMA + K+IRVL+++DP APH+VL LDATT Sbjct: 287 AFDALQAARDKGVDVLLVDTAGRLQNKAELMAELEKVIRVLRKIDPAAPHTVLLTLDATT 346 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL QVE+F AG TGL+MTK+DGTARGG L+ I + +PV+F+GVGEG++DLEPF Sbjct: 347 GQNALSQVEIFGRTAGVTGLVMTKLDGTARGGILVAIAAKYGLPVHFIGVGEGVDDLEPF 406 Query: 302 VAKDFSAVITGC 313 AKD++ I G Sbjct: 407 SAKDYARAIAGL 418 >gi|257482993|ref|ZP_05637034.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011768|gb|EGH91824.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 496 Score = 344 bits (884), Expect = 8e-93, Method: Composition-based stats. Identities = 128/310 (41%), Positives = 194/310 (62%), Gaps = 2/310 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62 Q+ + + + +L +G + TS + EG+ + ++ +DD + EE+E L+ +D+GV Sbjct: 181 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 240 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 I++ L K K ++ + LY + + ML P+ +P H+P VILVVGVNG Sbjct: 241 TSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNG 300 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 301 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 360 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA T Sbjct: 361 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 420 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F Sbjct: 421 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 480 Query: 302 VAKDFSAVIT 311 A+ F + Sbjct: 481 EAEPFVQALF 490 >gi|71736424|ref|YP_276881.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556977|gb|AAZ36188.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. phaseolicola 1448A] Length = 500 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 128/310 (41%), Positives = 193/310 (62%), Gaps = 2/310 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62 Q+ + + + +L +G + TS + EG+ + ++ +DD + EE+E L+ +D+GV Sbjct: 185 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 244 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 I+ L K K ++ + LY + + ML P+ +P H+P VILVVGVNG Sbjct: 245 TSVIINSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKVEHKPFVILVVGVNG 304 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 305 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 364 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA T Sbjct: 365 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 424 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F Sbjct: 425 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 484 Query: 302 VAKDFSAVIT 311 A+ F + Sbjct: 485 EAEPFVQALF 494 >gi|289624656|ref|ZP_06457610.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|298485261|ref|ZP_07003354.1| signal recognition particle docking protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160249|gb|EFI01277.1| signal recognition particle docking protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330871132|gb|EGH05841.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 496 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 128/310 (41%), Positives = 194/310 (62%), Gaps = 2/310 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62 Q+ + + + +L +G + TS + EG+ + ++ +DD + EE+E L+ +D+GV Sbjct: 181 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 240 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 I++ L K K ++ + LY + + ML P+ +P H+P VILVVGVNG Sbjct: 241 TSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNG 300 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 301 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 360 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA T Sbjct: 361 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 420 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F Sbjct: 421 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 480 Query: 302 VAKDFSAVIT 311 A+ F + Sbjct: 481 EAEPFVQALF 490 >gi|289648495|ref|ZP_06479838.1| cell division transporter substrate-binding protein FtsY [Pseudomonas syringae pv. aesculi str. 2250] Length = 494 Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 128/310 (41%), Positives = 194/310 (62%), Gaps = 2/310 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62 Q+ + + + +L +G + TS + EG+ + ++ +DD + EE+E L+ +D+GV Sbjct: 179 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 238 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 I++ L K K ++ + LY + + ML P+ +P H+P VILVVGVNG Sbjct: 239 TSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNG 298 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 299 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 358 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA T Sbjct: 359 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 418 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F Sbjct: 419 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 478 Query: 302 VAKDFSAVIT 311 A+ F + Sbjct: 479 EAEPFVQALF 488 >gi|302187229|ref|ZP_07263902.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. syringae 642] Length = 502 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 127/312 (40%), Positives = 195/312 (62%), Gaps = 2/312 (0%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGV 60 + ++ + + + +L +G + TS + EG+ + ++ +DD + EE+E L+ +D+GV Sbjct: 185 ATPELETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGV 244 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 I++ L K K ++ + LY + + ML P+ +P H+P VILVVGV Sbjct: 245 EATSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKSEHKPFVILVVGV 304 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NG GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A Sbjct: 305 NGAGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSA 364 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA Sbjct: 365 SVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDA 424 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQNA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL Sbjct: 425 GTGQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLR 484 Query: 300 PFVAKDFSAVIT 311 F A+ F + Sbjct: 485 TFEAEPFVQALF 496 >gi|330970953|gb|EGH71019.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. aceris str. M302273PT] Length = 499 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 127/312 (40%), Positives = 193/312 (61%), Gaps = 2/312 (0%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGV 60 + + + + +L +G + TS + EG+ + ++ +DD + EE+E L+ +D+GV Sbjct: 182 PAPEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGV 241 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 I++ L K K ++ + LY + + ML P+ +P H+P VILVVGV Sbjct: 242 EATSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGV 301 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NG GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A Sbjct: 302 NGAGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSA 361 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA Sbjct: 362 SVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDA 421 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQNA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL Sbjct: 422 GTGQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLR 481 Query: 300 PFVAKDFSAVIT 311 F A+ F + Sbjct: 482 TFEAEPFVQALF 493 >gi|15889947|ref|NP_355628.1| cell division particle [Agrobacterium tumefaciens str. C58] gi|15157906|gb|AAK88413.1| cell division particle [Agrobacterium tumefaciens str. C58] Length = 478 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 181/303 (59%), Positives = 236/303 (77%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 L+W ++L G A TS +L I+ + + R+LD+ +ELEDLLI+SD+GV A +I Sbjct: 175 KLTWFQRLRAGLARTSSQLTTQISALFTKRKLDEDTLDELEDLLIQSDLGVETAMRITGA 234 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L ++RY KDVS + V ++ I K+L P++KP D SH+PHVILVVGVNG GKTT IG Sbjct: 235 LSSERYGKDVSGEDVARIMAGEITKVLKPVAKPLELDLSHKPHVILVVGVNGTGKTTTIG 294 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ K+S +GLKVMLAAGDTFR+AAI+QLKIWADRT ++F+ +++G+DAA LAY+A++QA Sbjct: 295 KLAAKLSGSGLKVMLAAGDTFRAAAIEQLKIWADRTGSEFIGTKLGADAAGLAYDAYEQA 354 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+K DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNA+ QV Sbjct: 355 RAQKSDVLIIDTAGRLQNKTELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNAMNQV 414 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E+F VAG +GLIMTK+DGTARGG L+ I HK+PVYF+GVGEG+ DLEPF A+DF+ Sbjct: 415 EIFRNVAGVSGLIMTKLDGTARGGILVAIAAKHKLPVYFIGVGEGVEDLEPFEAEDFAKA 474 Query: 310 ITG 312 I G Sbjct: 475 IAG 477 >gi|330965439|gb|EGH65699.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. actinidiae str. M302091] Length = 514 Score = 341 bits (876), Expect = 7e-92, Method: Composition-based stats. Identities = 127/312 (40%), Positives = 193/312 (61%), Gaps = 2/312 (0%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGV 60 + + + + +L +G + TS + EG+ + ++ +DD + EE+E L+ +D+GV Sbjct: 197 PAPEAEAGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGV 256 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 I++ L K K ++ + LY + + ML P+ +P H+P VILVVGV Sbjct: 257 EATSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGV 316 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NG GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A Sbjct: 317 NGAGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSA 376 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA Sbjct: 377 SVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDA 436 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQNA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL Sbjct: 437 GTGQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLR 496 Query: 300 PFVAKDFSAVIT 311 F A+ F + Sbjct: 497 TFEAEPFVQALF 508 >gi|66047975|ref|YP_237816.1| cell division transporter substrate-binding protein FtsY [Pseudomonas syringae pv. syringae B728a] gi|63258682|gb|AAY39778.1| Cell division transporter substrate-binding protein FtsY [Pseudomonas syringae pv. syringae B728a] Length = 505 Score = 341 bits (876), Expect = 7e-92, Method: Composition-based stats. Identities = 127/312 (40%), Positives = 193/312 (61%), Gaps = 2/312 (0%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGV 60 + + + + +L +G + TS + EG+ + ++ +DD + EE+E L+ +D+GV Sbjct: 188 PAPESETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGV 247 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 I++ L K K ++ + LY + + ML P+ +P H+P VILVVGV Sbjct: 248 EATSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGV 307 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NG GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A Sbjct: 308 NGAGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSA 367 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA Sbjct: 368 SVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDA 427 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQNA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL Sbjct: 428 GTGQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLR 487 Query: 300 PFVAKDFSAVIT 311 F A+ F + Sbjct: 488 TFEAEPFVQALF 499 >gi|28867657|ref|NP_790276.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. tomato str. DC3000] gi|28850892|gb|AAO53971.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. tomato str. DC3000] gi|331014970|gb|EGH95026.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 513 Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats. Identities = 127/304 (41%), Positives = 191/304 (62%), Gaps = 2/304 (0%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVE 68 + + +L +G + TS + EG+ + ++ +DD + EE+E L+ +D+GV I++ Sbjct: 204 KVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIK 263 Query: 69 ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L K K ++ + LY + + ML P+ +P H+P VILVVGVNG GKTT Sbjct: 264 SLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNGAGKTTT 323 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + Sbjct: 324 IGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQ 383 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Sbjct: 384 AAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAIN 443 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A+ F Sbjct: 444 QAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPFV 503 Query: 308 AVIT 311 + Sbjct: 504 QALF 507 >gi|148550186|ref|YP_001270288.1| signal recognition particle-docking protein FtsY [Pseudomonas putida F1] gi|148514244|gb|ABQ81104.1| signal recognition particle-docking protein FtsY [Pseudomonas putida F1] Length = 497 Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats. Identities = 130/311 (41%), Positives = 192/311 (61%), Gaps = 2/311 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQK 65 + +L +G + TS + EG+ + ++ +DD + +E+E L+ +D+GV Sbjct: 187 EQAKPGFFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSA 246 Query: 66 IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 IV+ L K K ++ LY + E + +L P+ +P ++P+VILVVGVNG GK Sbjct: 247 IVQNLTQKVARKQLADADALYKSLQEELAALLRPVEQPLKVQAQNKPYVILVVGVNGAGK 306 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++ Sbjct: 307 TTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFD 366 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + A+A+ VDVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQN Sbjct: 367 AVQAAKARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDVEAPHEVLLVLDAGTGQN 426 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ Q + F+ TGL +TK+DGTA+GG + + IP+ F+GVGEGI+DL F A+ Sbjct: 427 AISQAKYFNQSVELTGLALTKLDGTAKGGVIFALAKQFNIPIRFIGVGEGIDDLRTFEAE 486 Query: 305 DFSAVITGCLD 315 F + D Sbjct: 487 PFVKALFAERD 497 >gi|307128891|ref|YP_003880907.1| signal recognition particle (SRP) receptor [Dickeya dadantii 3937] gi|306526420|gb|ADM96350.1| signal recognition particle (SRP) receptor [Dickeya dadantii 3937] Length = 446 Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats. Identities = 126/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 +S ++ + +L + T L G + +++DD + +ELE+ L+ +D+GV Sbjct: 132 VSQEQERPTKEGFFARLKRSLVKTRQNLGSGFVGLFRGKKIDDDLFDELEEQLLIADVGV 191 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +KI++ L K + L + + +L + P + D S P VIL+VGV Sbjct: 192 ETTRKIIDRLTEHASRKQLKDAEALIALLKAEMSDILAKVDAPLDID-SKTPFVILMVGV 250 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W R + V G+D+A Sbjct: 251 NGVGKTTTIGKLARQYQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVPVVAQHTGADSA 310 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+A+ VDVLI DTAGRL N S LM + K++RV+K+LD +APH V+ LDA Sbjct: 311 SVIFDALQAARARGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDENAPHEVMLTLDA 370 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++F+ G +G+ +TK+DGTA+GG + I IP+ ++GVGE I+DL Sbjct: 371 STGQNAVSQAKLFNETVGLSGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGESIDDLR 430 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + D Sbjct: 431 PFKADDFIEALFARED 446 >gi|146284304|ref|YP_001174457.1| signal recognition particle receptor FtsY [Pseudomonas stutzeri A1501] gi|145572509|gb|ABP81615.1| signal recognition particle receptor FtsY [Pseudomonas stutzeri A1501] Length = 477 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 131/313 (41%), Positives = 195/313 (62%), Gaps = 2/313 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIG 59 ++ A L + +L +G + TS + EG+ + ++ +DD + +ELE L+ +D+G Sbjct: 159 VAATPEAPAKLGFFARLRQGLSKTSASIGEGMASLFLGKKAIDDDLLDELETRLLTADVG 218 Query: 60 VAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118 V I++ L + K+++ LY + E + +L P+ +P D S RP+VILVVG Sbjct: 219 VEATTAIMQNLTRRVSRKELADSGALYTALQEELVGLLKPVEQPLAIDASKRPYVILVVG 278 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNGVGKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+ Sbjct: 279 VNGVGKTTTIGKLAKKLQLDGKKVMLAAGDTFRAAAVEQLQVWGERNGIPVIAQHTGADS 338 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 A++ ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLD Sbjct: 339 ASVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVMGKLDESAPHEVLLVLD 398 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A TGQNA+ Q F+ TGL +TK+DGTA+GG + + P+ ++GVGEGI+DL Sbjct: 399 AGTGQNAINQTRQFNQAVELTGLALTKLDGTAKGGVIFALAKQFGTPIRYIGVGEGIDDL 458 Query: 299 EPFVAKDFSAVIT 311 F A F + Sbjct: 459 RTFEADAFVKALF 471 >gi|330985908|gb|EGH84011.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. lachrymans str. M301315] Length = 502 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 127/310 (40%), Positives = 193/310 (62%), Gaps = 2/310 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62 Q+ + + + +L +G + TS + EG+ + ++ +DD + EE+E L+ +D+GV Sbjct: 187 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 246 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 I++ L K K ++ + LY + + ML P+ +P H+ VILVVGVNG Sbjct: 247 TSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKSFVILVVGVNG 306 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 307 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 366 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA T Sbjct: 367 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 426 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F Sbjct: 427 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 486 Query: 302 VAKDFSAVIT 311 A+ F + Sbjct: 487 EAEPFVQALF 496 >gi|26991787|ref|NP_747212.1| signal recognition particle-docking protein FtsY [Pseudomonas putida KT2440] gi|24986898|gb|AAN70676.1|AE016711_4 signal recognition particle receptor FtsY [Pseudomonas putida KT2440] Length = 494 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 131/311 (42%), Positives = 193/311 (62%), Gaps = 2/311 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQK 65 + +L +G + TS + EG+ + ++ +DD + +E+E L+ +D+GV Sbjct: 184 EQAKPGFFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSA 243 Query: 66 IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 IV+ L K K ++ LY + E + +L P+ +P N ++P+VILVVGVNG GK Sbjct: 244 IVQNLTQKVARKQLADADALYKSLQEELAALLRPVEQPLNVQAQNKPYVILVVGVNGAGK 303 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++ Sbjct: 304 TTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFD 363 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + A+A+ VDVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQN Sbjct: 364 AVQAAKARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDVEAPHEVLLVLDAGTGQN 423 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ Q + F+ TGL +TK+DGTA+GG + + IP+ F+GVGEGI+DL F A+ Sbjct: 424 AISQAKYFNQSVELTGLALTKLDGTAKGGVIFALAKQFNIPIRFIGVGEGIDDLRTFEAE 483 Query: 305 DFSAVITGCLD 315 F + D Sbjct: 484 PFVKALFAERD 494 >gi|167036150|ref|YP_001671381.1| signal recognition particle-docking protein FtsY [Pseudomonas putida GB-1] gi|166862638|gb|ABZ01046.1| signal recognition particle-docking protein FtsY [Pseudomonas putida GB-1] Length = 510 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 130/311 (41%), Positives = 192/311 (61%), Gaps = 2/311 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQK 65 + +L +G + TS + EG+ + ++ +DD + +E+E L+ +D+GV Sbjct: 200 EQAKPGFFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSA 259 Query: 66 IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 IV+ L K K ++ LY + E + +L P+ +P ++P+VILVVGVNG GK Sbjct: 260 IVQNLTQKVARKQLADADALYKSLQEELAALLRPVEQPLKVQAQNKPYVILVVGVNGAGK 319 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++ Sbjct: 320 TTTIGKLAKKLQLDGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFD 379 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + A+A+ VDVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQN Sbjct: 380 AVQAAKARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDAEAPHEVLLVLDAGTGQN 439 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ Q + F+ TGL +TK+DGTA+GG + + IP+ F+GVGEGI+DL F A+ Sbjct: 440 AISQAKYFNQSVELTGLALTKLDGTAKGGVIFALAKQFNIPIRFIGVGEGIDDLRTFEAE 499 Query: 305 DFSAVITGCLD 315 F + D Sbjct: 500 PFVKALFAERD 510 >gi|330898961|gb|EGH30380.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. japonica str. M301072PT] Length = 494 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 128/304 (42%), Positives = 191/304 (62%), Gaps = 2/304 (0%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVE 68 + + +L +G + TS + EG+ + ++ +DD + EE+E L+ +D+GV I++ Sbjct: 185 KVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIK 244 Query: 69 ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L K K ++ + LY + + ML P+ +P HRP VILVVGVNG GKTT Sbjct: 245 SLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKSEHRPFVILVVGVNGAGKTTT 304 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + Sbjct: 305 IGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQ 364 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Sbjct: 365 AAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAIN 424 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A+ F Sbjct: 425 QAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPFV 484 Query: 308 AVIT 311 + Sbjct: 485 QALF 488 >gi|218661335|ref|ZP_03517265.1| cell division protein [Rhizobium etli IE4771] Length = 335 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 184/308 (59%), Positives = 241/308 (78%), Gaps = 1/308 (0%) Query: 1 MSNQKVASE-SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59 + Q +A + LSW ++L G A TSL+L IT + + R+LDD ++LEDLLI++D+G Sbjct: 28 VEPQPIAPQAKLSWFQRLRNGLARTSLQLTNQITALFTKRKLDDETLQDLEDLLIQADLG 87 Query: 60 VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 V A ++ + L ++RY KDV+ + V ++ I K+L P++KP D SH+PHVILVVGV Sbjct: 88 VETALRVTDTLASERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGV 147 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NG GKTT IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT ++FV +++G+DAA Sbjct: 148 NGTGKTTTIGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTKSEFVGTKLGADAA 207 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 LAY+AF+QA+AKK DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDA Sbjct: 208 GLAYDAFEQAKAKKCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDA 267 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNAL QVE+F VAG GLIMTK+DGTARGG L+ I HK+PVYF+GVGEG++DLE Sbjct: 268 TTGQNALSQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVDDLE 327 Query: 300 PFVAKDFS 307 PF A+DF+ Sbjct: 328 PFEAEDFA 335 >gi|104779581|ref|YP_606079.1| cell division protein FtsY [Pseudomonas entomophila L48] gi|95108568|emb|CAK13262.1| cell division protein FtsY [Pseudomonas entomophila L48] Length = 524 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 129/304 (42%), Positives = 192/304 (63%), Gaps = 2/304 (0%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVE 68 + +L +G + TS + EG+ + ++ +DD + +E+E L+ +D+GV IV+ Sbjct: 215 KPGFFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSTIVQ 274 Query: 69 ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L K K ++ LY + E + +L P+ +P + ++P+VILVVGVNG GKTT Sbjct: 275 NLTQKVARKQLADADALYKSLQEELAALLRPVEQPLKIEAQNKPYVILVVGVNGAGKTTT 334 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + Sbjct: 335 IGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFDAVQ 394 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+A+ VDVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Sbjct: 395 AAKARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDAEAPHEVLLVLDAGTGQNAIS 454 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 Q + F+ TGL +TK+DGTA+GG + + IP+ F+GVGEGI+DL F A+ F Sbjct: 455 QAKYFNQSVELTGLALTKLDGTAKGGVIFALAKQFNIPIRFIGVGEGIDDLRTFEAEPFV 514 Query: 308 AVIT 311 + Sbjct: 515 KALF 518 >gi|330874697|gb|EGH08846.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 516 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 126/304 (41%), Positives = 191/304 (62%), Gaps = 2/304 (0%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVE 68 + + +L +G + TS + EG+ + ++ +DD + EE+E L+ +D+GV I++ Sbjct: 207 KVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIK 266 Query: 69 ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L K K ++ + LY + + +L P+ +P H+P VILVVGVNG GKTT Sbjct: 267 SLTQKVARKQLTDAQALYTSLQAELAALLKPVEQPLVIKAEHKPFVILVVGVNGAGKTTT 326 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + Sbjct: 327 IGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQ 386 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Sbjct: 387 AAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAIN 446 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A+ F Sbjct: 447 QAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPFV 506 Query: 308 AVIT 311 + Sbjct: 507 QALF 510 >gi|110635717|ref|YP_675925.1| signal recognition particle-docking protein FtsY [Mesorhizobium sp. BNC1] gi|110286701|gb|ABG64760.1| signal recognition particle-docking protein FtsY [Chelativorans sp. BNC1] Length = 500 Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats. Identities = 167/307 (54%), Positives = 224/307 (72%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 V W ++L +G +S +L++ I I R+LD+ ++LED+L+R+D+G+ A + Sbjct: 192 VEEPRKPWFQRLREGLYRSSRELRDNIAGIFLKRKLDEDTLQDLEDVLLRADLGLETAMR 251 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 + + L RY KD++ V ++E I K+L P++ P D SH+PHVILVVGVNG GKT Sbjct: 252 VTDALSVGRYGKDITGAEVQAVMAEEIEKVLKPVALPLELDLSHKPHVILVVGVNGTGKT 311 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+ K++ GL VMLAAGDTFR+AAI+QLKIW +RT + + S +G+DAA LAYEA Sbjct: 312 TTIGKLAAKLAQGGLNVMLAAGDTFRAAAIEQLKIWGERTGSAVISSRLGADAAGLAYEA 371 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 +++A+A DVLIIDTAGRL N + LMA + K++RVL + DP APH+VLQ LDATTGQNA Sbjct: 372 YEKAKAAGSDVLIIDTAGRLQNKAELMAELEKIVRVLGKHDPEAPHTVLQTLDATTGQNA 431 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L QVE+F VAG +GL+MTK+DGTARGG L+ I HK+PVYF+GVGEG++DLEPF A D Sbjct: 432 LNQVEIFRNVAGVSGLVMTKLDGTARGGILVAIAAKHKLPVYFIGVGEGVDDLEPFSASD 491 Query: 306 FSAVITG 312 F+ I G Sbjct: 492 FAKAIAG 498 >gi|269140670|ref|YP_003297371.1| cell division protein [Edwardsiella tarda EIB202] gi|267986331|gb|ACY86160.1| cell division protein [Edwardsiella tarda EIB202] gi|304560455|gb|ADM43119.1| Signal recognition particle receptor protein FtsY [Edwardsiella tarda FL6-60] Length = 589 Score = 338 bits (867), Expect = 6e-91, Method: Composition-based stats. Identities = 127/313 (40%), Positives = 194/313 (61%), Gaps = 2/313 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++ + +L + T L G + +++DD + +ELE+ LI +D+GV Sbjct: 278 EQEKPVKEGFFARLKRSLVKTRQNLGSGFFGLFRGKKIDDDLFDELEEQLIVADVGVETT 337 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 +KI++ L K++ LY + E + ++L + P + H+P VIL+VGVNGV Sbjct: 338 RKIIDSLTAHASRKELKDAEALYGKLKEEMGEILQKVDAPLDIS-GHQPFVILMVGVNGV 396 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+++ G VMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 397 GKTTTIGKLARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVI 456 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+A+KVDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TG Sbjct: 457 FDAIQAAKARKVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEQAPHEVMLTIDASTG 516 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q +F+ G TG+ +TK+DGTA+GG + + IP+ ++GVGEGI DL PF Sbjct: 517 QNAVSQARLFNEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGEGIEDLRPFK 576 Query: 303 AKDFSAVITGCLD 315 A DF + D Sbjct: 577 ADDFIEALFARED 589 >gi|70733142|ref|YP_262915.1| signal recognition particle-docking protein FtsY [Pseudomonas fluorescens Pf-5] gi|68347441|gb|AAY95047.1| signal recognition particle-docking protein FtsY [Pseudomonas fluorescens Pf-5] Length = 497 Score = 338 bits (867), Expect = 7e-91, Method: Composition-based stats. Identities = 125/309 (40%), Positives = 190/309 (61%), Gaps = 2/309 (0%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVA 63 + + +L +G + TS + EG+ + ++ +DD + E+LE L+ +D+GV Sbjct: 183 PAEESKIGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDELLEDLETRLLTADVGVEAT 242 Query: 64 QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 I++ L K K ++ LY + + ML P+ +P ++P VILVVGVNG Sbjct: 243 SVIIQNLTQKVARKQLTDSDALYASLQAELTSMLKPVEQPLQIVAQNKPFVILVVGVNGA 302 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 303 GKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVI 362 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TG Sbjct: 363 FDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTG 422 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q + F+ +GL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F Sbjct: 423 QNAINQAKQFNQTVQLSGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFE 482 Query: 303 AKDFSAVIT 311 A+ F + Sbjct: 483 AEPFVQALF 491 >gi|257455444|ref|ZP_05620679.1| cell division protein FtsY [Enhydrobacter aerosaccus SK60] gi|257447406|gb|EEV22414.1| cell division protein FtsY [Enhydrobacter aerosaccus SK60] Length = 404 Score = 338 bits (867), Expect = 7e-91, Method: Composition-based stats. Identities = 135/307 (43%), Positives = 195/307 (63%), Gaps = 2/307 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 + W ++ +G + + L EG+T+I I + +DD + EE+ED L+ +DIGV + Sbjct: 94 PEQKGGWFSRMKQGLSKSRKNLTEGLTNILIGGKEIDDELLEEVEDQLLVADIGVNATNR 153 Query: 66 IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 I++ L D+ LY + + + +L P P D S +P VILVVGVNGVGK Sbjct: 154 IIKNLTEATARGDLIYSHSLYKALQKELTDILTPKVAPLVVDASTKPFVILVVGVNGVGK 213 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+K++ G VMLAAGDTFR+AA +QL++W +R + V GSD+A++ ++ Sbjct: 214 TTTIGKLAKRLQGEGKSVMLAAGDTFRAAATEQLQVWGERNNIPVVAQGHGSDSASVIFD 273 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + A+A+ +DVLI DTAGRL N + LM + K+IRV+++ DP APH + VLDA TGQN Sbjct: 274 AIQSAKARGIDVLIADTAGRLQNKTNLMEELKKVIRVMQKADPTAPHESMIVLDAGTGQN 333 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 AL QVE+F+ TG+ +TK+DGTA+GG + I +P+ F+GVGE I+DL PF A Sbjct: 334 ALNQVEIFNEAVPLTGVTVTKLDGTAKGGVVFNIAENTNVPIRFIGVGEKIDDLRPFQAD 393 Query: 305 DFSAVIT 311 DF + Sbjct: 394 DFVKALF 400 >gi|37527951|ref|NP_931296.1| cell division protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787387|emb|CAE16476.1| cell division protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 424 Score = 338 bits (867), Expect = 7e-91, Method: Composition-based stats. Identities = 131/316 (41%), Positives = 199/316 (62%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 +S ++ + +L + T L G + S +++DD + +ELE+ L+ +D+GV Sbjct: 110 ISKEQERPTKEGFFSRLKRSLVKTRQNLGSGFLSLFSGKKIDDDLFDELEEQLLIADVGV 169 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +KI+ L K++ LY + E + +L ++KP + + P+VIL+VGV Sbjct: 170 DTTRKIISSLTEHASRKELKDAEALYAKLKEEMSGILTKVNKPLDIE-GKTPYVILMVGV 228 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W +R V G+D A Sbjct: 229 NGVGKTTTIGKLARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQHTGADPA 288 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+AK VDVLI DTAGRL N S LM + K++RV+K+LD +APH ++ +LDA Sbjct: 289 SVIFDAIQSAKAKSVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDENAPHEIMLILDA 348 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++FH G TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL Sbjct: 349 STGQNAISQAKLFHEAVGLTGISLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLR 408 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + D Sbjct: 409 PFKADDFIEALFARED 424 >gi|220924283|ref|YP_002499585.1| signal recognition particle-docking protein FtsY [Methylobacterium nodulans ORS 2060] gi|219948890|gb|ACL59282.1| signal recognition particle-docking protein FtsY [Methylobacterium nodulans ORS 2060] Length = 437 Score = 338 bits (867), Expect = 8e-91, Method: Composition-based stats. Identities = 151/304 (49%), Positives = 205/304 (67%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 W +LT G TS L E +T + + R+LD EELED LI++D GV A +I E Sbjct: 130 KRGWWSRLTGGLRRTSSALSERVTGLFTKRKLDATTLEELEDALIQADFGVETAMRISEA 189 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + RY K ++ V ++ + + L P+++P D +P V+L+VGVNG GKTT IG Sbjct: 190 VGKGRYEKGIAPDEVRAILATEVERALEPVARPLALDPGAKPFVLLMVGVNGAGKTTTIG 249 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL++K G VMLAAGDTFR+AAI+QLK+W +RT A V G+DAA LA++A + A Sbjct: 250 KLAQKFRAQGRSVMLAAGDTFRAAAIEQLKVWGERTGAPVVTRPQGADAAGLAFDALQAA 309 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DVL+IDTAGRL N + LMA + K++RV+++LD APH+VL VLDAT GQNA+ QV Sbjct: 310 RESGTDVLMIDTAGRLQNKAGLMAELEKIVRVIRKLDESAPHAVLLVLDATVGQNAISQV 369 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E+F AG TGL+MTK+DGTARGG L+ + +PV+F+GVGEG++DLEPF A+DF+ Sbjct: 370 ELFQKTAGVTGLVMTKLDGTARGGILVALAAKFGLPVHFIGVGEGVDDLEPFTARDFARA 429 Query: 310 ITGC 313 I G Sbjct: 430 IAGL 433 >gi|213967799|ref|ZP_03395946.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. tomato T1] gi|301382436|ref|ZP_07230854.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. tomato Max13] gi|302061172|ref|ZP_07252713.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. tomato K40] gi|302132035|ref|ZP_07258025.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927575|gb|EEB61123.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. tomato T1] Length = 513 Score = 337 bits (866), Expect = 8e-91, Method: Composition-based stats. Identities = 126/304 (41%), Positives = 190/304 (62%), Gaps = 2/304 (0%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVE 68 + + +L +G + TS + EG+ + ++ +DD + EE+E L+ +D+GV I++ Sbjct: 204 KVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIK 263 Query: 69 ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L K K ++ + LY + + ML + +P H+P VILVVGVNG GKTT Sbjct: 264 SLTQKVARKQLTDAQALYTSLQGELAAMLKLVEQPLVIKAEHKPFVILVVGVNGAGKTTT 323 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + Sbjct: 324 IGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQ 383 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Sbjct: 384 AAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAIN 443 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A+ F Sbjct: 444 QAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPFV 503 Query: 308 AVIT 311 + Sbjct: 504 QALF 507 >gi|192360531|ref|YP_001983953.1| signal recognition particle receptor FtsY [Cellvibrio japonicus Ueda107] gi|190686696|gb|ACE84374.1| signal recognition particle receptor FtsY [Cellvibrio japonicus Ueda107] Length = 374 Score = 337 bits (866), Expect = 9e-91, Method: Composition-based stats. Identities = 131/311 (42%), Positives = 202/311 (64%), Gaps = 2/311 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQK 65 A L + ++ +G + TS EG+ + + +D+ + EELE L+ +D+G+ + Sbjct: 63 AEPKLGFFARIKRGLSRTSSHFAEGLGKLFLGRKTIDEELFEELETQLLIADVGMEATSE 122 Query: 66 IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 I++ L ++ K ++ L+ + E + ++L P+ +P +++P+VILVVGVNGVGK Sbjct: 123 IIDNLTSRVARKQLADSDALFAALREQLAELLRPVEQPLVIPAANKPYVILVVGVNGVGK 182 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+K++ + G KVMLAAGDTFR+AA++QL++W R + + G+D+A++ ++ Sbjct: 183 TTTIGKLAKRLQNDGRKVMLAAGDTFRAAAVEQLQVWGQRNNVPVIAQHSGADSASVIFD 242 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A AQ++ +DV+I DTAGRLHN + LM + K+ RV+ +LD APH VL VLDA TGQN Sbjct: 243 ALSAAQSRGIDVVIADTAGRLHNKNHLMDELAKVKRVMAKLDVSAPHEVLLVLDAGTGQN 302 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 AL Q E F AG TG+ +TK+DGTA+GG + + +PV F+GVGEGI+DL+PF A+ Sbjct: 303 ALNQAEQFRDAAGVTGIALTKLDGTAKGGVIFALSKKFGLPVRFIGVGEGIDDLQPFAAE 362 Query: 305 DFSAVITGCLD 315 F + D Sbjct: 363 PFINALFNVAD 373 >gi|218507763|ref|ZP_03505641.1| cell division protein [Rhizobium etli Brasil 5] Length = 303 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 180/301 (59%), Positives = 236/301 (78%) Query: 13 WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72 W ++L G A TS +L IT + + R+LDD ++LEDLLI++D+GV A ++ + L + Sbjct: 1 WFQRLRNGLARTSSQLTGQITALFTKRKLDDETLQDLEDLLIQADLGVETALRVTDTLAS 60 Query: 73 KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 +RY KDV+ + V ++ I K+L P++KP D SH+PHVILVVGVNG GKTT IGKL+ Sbjct: 61 ERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGVNGTGKTTTIGKLA 120 Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 K+S AGLKVM+AAGDTFR+AAI+QLKIWA+RT+++FV +++G+DAA LAY+AF+QA+AK Sbjct: 121 AKLSGAGLKVMVAAGDTFRAAAIEQLKIWAERTNSEFVGTKLGADAAGLAYDAFEQAKAK 180 Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252 K DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNAL QVE+F Sbjct: 181 KCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNALSQVEIF 240 Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 VAG GLIMTK+DGTARGG L+ I HK+PVYF+GVGEG++DLEPF A+DF+ I G Sbjct: 241 RNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVDDLEPFEAEDFAHAIAG 300 Query: 313 C 313 Sbjct: 301 L 301 >gi|251791621|ref|YP_003006342.1| signal recognition particle-docking protein FtsY [Dickeya zeae Ech1591] gi|247540242|gb|ACT08863.1| signal recognition particle-docking protein FtsY [Dickeya zeae Ech1591] Length = 452 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 124/316 (39%), Positives = 189/316 (59%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 +S ++ + +L + T L G + +++DD + +ELE+ L+ +D+GV Sbjct: 138 VSQEQERPTKEGFFARLKRSLIKTRQNLGSGFVGLFRGKKIDDDLFDELEEQLLIADVGV 197 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +KI++ L K + L + + +L + P D P VIL+VGV Sbjct: 198 ETTRKIIDRLTEHASRKQLKDAEALIALLKAEMSDILAKVDAPLAID-GKTPFVILMVGV 256 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W R + V G+D+A Sbjct: 257 NGVGKTTTIGKLARQYQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVPVVAQHTGADSA 316 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+A+ VDVLI DTAGRL N + LM + K++RV+K+LD APH V+ LDA Sbjct: 317 SVIFDALQAAKARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEEAPHEVMLTLDA 376 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++F+ G G+ +TK+DGTA+GG + I IP+ ++GVGE I+DL Sbjct: 377 STGQNAVSQAKLFNEAVGLNGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGESIDDLR 436 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + D Sbjct: 437 PFKADDFIEALFARED 452 >gi|170741579|ref|YP_001770234.1| signal recognition particle-docking protein FtsY [Methylobacterium sp. 4-46] gi|168195853|gb|ACA17800.1| signal recognition particle-docking protein FtsY [Methylobacterium sp. 4-46] Length = 473 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 151/309 (48%), Positives = 208/309 (67%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 E W +LT G TS L E +T + + R+LD EELED LI++D GV A +I E Sbjct: 165 ERRGWWSRLTGGLRRTSSALSERVTGLFTKRKLDATTLEELEDALIQADFGVETATRIAE 224 Query: 69 ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + RY K +S V ++ + + L P+++P + + +P V+L+VGVNG GKTT I Sbjct: 225 AVGKGRYEKGISPDEVRAILAAEVERALEPVARPLTLEGAAKPFVLLMVGVNGAGKTTTI 284 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL++K G VMLAAGDTFR+AAI+QLK+W +RT A + G+DAA LA++A + Sbjct: 285 GKLAQKFRAQGRSVMLAAGDTFRAAAIEQLKVWGERTGAPVLSRPQGADAAGLAFDALQA 344 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ DVL+IDTAGRL N + LMA + K++RV+++LD APH+VL VLDAT GQNA+ Q Sbjct: 345 AREAGTDVLMIDTAGRLQNKAGLMAELEKIVRVIRKLDETAPHAVLLVLDATVGQNAISQ 404 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 VE+F AG +GL+MTK+DGTARGG L+ + +PV+F+GVGEG++DLEPF A+DF+ Sbjct: 405 VELFQKTAGVSGLVMTKLDGTARGGILVALAAKFGLPVHFIGVGEGVDDLEPFTARDFAR 464 Query: 309 VITGCLDYG 317 I G G Sbjct: 465 AIAGLDKDG 473 >gi|271502549|ref|YP_003335575.1| signal recognition particle-docking protein FtsY [Dickeya dadantii Ech586] gi|270346104|gb|ACZ78869.1| signal recognition particle-docking protein FtsY [Dickeya dadantii Ech586] Length = 466 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 126/316 (39%), Positives = 190/316 (60%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 +S ++ + +L + T L G + +++DD + +ELE+ L+ +D+GV Sbjct: 152 VSQEQERPTKEGFFARLKRSLIKTRQNLGSGFVGLFRGKKIDDDLFDELEEQLLIADVGV 211 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +KI+ L K + L + + +L + P D S P VIL+VGV Sbjct: 212 ETTRKIIARLTEHASRKQLKDAEALIALLKSEMSDILAKVDVPLAID-SKTPFVILMVGV 270 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W R + V G+D+A Sbjct: 271 NGVGKTTTIGKLARQYQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVPVVAQHTGADSA 330 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+A+ VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ LDA Sbjct: 331 SVIFDALQAAKARGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEVMLTLDA 390 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++F+ G +G+ +TK+DGTA+GG + I IP+ ++GVGE I+DL Sbjct: 391 STGQNAVSQAKLFNEAVGLSGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGESIDDLR 450 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + D Sbjct: 451 PFKADDFIEALFARED 466 >gi|284008656|emb|CBA75288.1| cell division protein [Arsenophonus nasoniae] Length = 414 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 128/309 (41%), Positives = 202/309 (65%), Gaps = 2/309 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ ++ +L +G T + G +++DD + +ELE+ L+ +D+G+ Sbjct: 103 QQKKPAKENFFSRLRRGLLKTRQNMGIGFVSFFRGKKIDDDLFDELEEQLLIADVGLETT 162 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 +KI++ L K+++ +LY + E + +L + KP + + P+VIL+VGVNGV Sbjct: 163 RKIIDSLTNHANRKELNDAAMLYSKLREEMANILSGVEKPLVIE-NKLPYVILMVGVNGV 221 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+++ G VMLAAGDTFR+AA++QL++W +R + V + G+D A++ Sbjct: 222 GKTTTIGKLARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQQTGADPASVI 281 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+AK +D+LI DTAGRL N + LM + K++RV+++LD HAPH V+ LDA+TG Sbjct: 282 FDAIQSAKAKGIDILIADTAGRLQNKTHLMEELKKIVRVMQKLDQHAPHEVMLTLDASTG 341 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++FH G TG+I+TK+DGTA+GG + I KIP+ ++G+GEGI+DL PFV Sbjct: 342 QNAINQAKIFHEAVGLTGIILTKLDGTAKGGVIFAIADQFKIPIRYIGIGEGIDDLRPFV 401 Query: 303 AKDFSAVIT 311 A DF + Sbjct: 402 AHDFIEALF 410 >gi|320539370|ref|ZP_08039039.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein [Serratia symbiotica str. Tucson] gi|320030495|gb|EFW12505.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein [Serratia symbiotica str. Tucson] Length = 440 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 127/313 (40%), Positives = 190/313 (60%), Gaps = 2/313 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++ + +L T L G + +R+DD + +ELE+ L+ +D+GV Sbjct: 129 EQERPTKEGFFTRLKHSLLKTKQNLGSGFISLFRGKRIDDDLFDELEEQLLIADVGVETT 188 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 +KI+ L K + LY + + ++L + +P N P+VIL+VGVNGV Sbjct: 189 RKIITTLTQHASRKQLKDAEALYGKLKAEMSEILTNVDRPLNVS-GKAPYVILMVGVNGV 247 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ Sbjct: 248 GKTTTIGKLARQFQAKGKSVMLAAGDTFRAAAVEQLQVWGERNRIPVVAQHTGADSASVI 307 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+A+ VDVLI DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TG Sbjct: 308 FDAVQAAKARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDTQAPHEVMLTLDASTG 367 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF Sbjct: 368 QNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFK 427 Query: 303 AKDFSAVITGCLD 315 A DF + D Sbjct: 428 ADDFIEALFAQED 440 >gi|17986415|ref|NP_539049.1| signal recognition particle receptor FTSY [Brucella melitensis bv. 1 str. 16M] gi|17982009|gb|AAL51313.1| signal recognition particle receptor ftsy [Brucella melitensis bv. 1 str. 16M] Length = 314 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 171/312 (54%), Positives = 225/312 (72%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 M + LSW +L +G A +S L + I I + R+LDD ++LED+LI++D+G+ Sbjct: 1 MPAEVAPEPKLSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGL 60 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 A ++ + L + Y KDV + V +S I K+L P++KP D SH+PHVILVVGVN Sbjct: 61 ETAMRVTDALASGHYGKDVPGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVN 120 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA Sbjct: 121 GTGKTTTIGKLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAG 180 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LAY+A+++A+ DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDAT Sbjct: 181 LAYDAWEKAKEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDAT 240 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNAL QVE+F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEGI+DLEP Sbjct: 241 TGQNALNQVEIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEP 300 Query: 301 FVAKDFSAVITG 312 F AKDF+ I G Sbjct: 301 FAAKDFARAIAG 312 >gi|90421123|ref|ZP_01229025.1| cell division protein FtsY [Aurantimonas manganoxydans SI85-9A1] gi|90334615|gb|EAS48395.1| cell division protein FtsY [Aurantimonas manganoxydans SI85-9A1] Length = 362 Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 161/303 (53%), Positives = 219/303 (72%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + W+++L +G A +S +L I I + RRLD+ ++ ED+LI++D+GV A KI + Sbjct: 55 RVPWLQRLREGLARSSTQLTGSIGAIFTKRRLDEDTLQDFEDVLIQADLGVETALKITDR 114 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L R+ +++S Q V ++E I K L P++ P D + +PHVILVVGVNG GKTT IG Sbjct: 115 LSEGRFGREISGQDVRTILAEEIEKALDPVALPLELDLAKKPHVILVVGVNGTGKTTTIG 174 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ K++ GLKV L AGDTFR+AA++QLKIW +RT ++ V IG+DAA+LAYE + +A Sbjct: 175 KLAAKLTRGGLKVTLCAGDTFRAAAVEQLKIWGERTQSEVVAKAIGADAASLAYEGYDRA 234 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 DVLIIDTAGRL N + LMA + K++RVL++ +P APH+VL LDATTGQNA+ QV Sbjct: 235 VENGSDVLIIDTAGRLQNKTELMAELEKIVRVLQKREPDAPHTVLLTLDATTGQNAMNQV 294 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E+F VAG GL+MTK+DG+ARGG L+ I ++PVYF+GVGEGI+DLEPF AKDF+A Sbjct: 295 EIFRNVAGVNGLVMTKLDGSARGGILVAIAAKFRLPVYFVGVGEGIDDLEPFKAKDFAAA 354 Query: 310 ITG 312 I G Sbjct: 355 IAG 357 >gi|294638159|ref|ZP_06716415.1| cell division protein FtsY [Edwardsiella tarda ATCC 23685] gi|291088726|gb|EFE21287.1| cell division protein FtsY [Edwardsiella tarda ATCC 23685] Length = 500 Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 127/315 (40%), Positives = 196/315 (62%), Gaps = 2/315 (0%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + ++ + +L + T L G + +++DD + +ELE+ L+ +D+GV Sbjct: 187 AREQEKPTKEGFFARLKRSLVKTRQNLGSGFFGLFRGKKIDDDLFDELEEQLLVADVGVD 246 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 +KI++ L T K++ LY + + + ++L + P + H+P VIL+VGVN Sbjct: 247 TTRKIIDTLTTHASRKELKDAEALYGKLKQEMGEILHKVDAPLDIS-GHQPFVILMVGVN 305 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W +R + G+D+A+ Sbjct: 306 GVGKTTTIGKLARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSAS 365 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++A + A+A+KVDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+ Sbjct: 366 VIFDAIQAAKARKVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEQAPHEVMLTIDAS 425 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNA+ Q +FH G TG+ +TK+DGTA+GG + + IP+ ++GVGEGI DL P Sbjct: 426 TGQNAISQARLFHEAVGLTGITLTKLDGTAKGGVIFAVADQFGIPIRYIGVGEGIEDLRP 485 Query: 301 FVAKDFSAVITGCLD 315 F A DF + D Sbjct: 486 FKADDFIEALFARED 500 >gi|327482688|gb|AEA85998.1| signal recognition particle receptor FtsY [Pseudomonas stutzeri DSM 4166] Length = 442 Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 131/307 (42%), Positives = 193/307 (62%), Gaps = 2/307 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQK 65 A L + +L +G + TS + EG+ + ++ +DD + +ELE L+ +D+GV Sbjct: 130 APAKLGFFARLRQGLSKTSASIGEGMASLFLGKKAIDDDLLDELETRLLTADVGVEATTA 189 Query: 66 IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 I++ L + K+++ LY + E + +L P+ +P D S RP+VILVVGVNGVGK Sbjct: 190 IMQNLTRRVSRKELADSGALYTALQEELVGLLKPVEQPLAVDASKRPYVILVVGVNGVGK 249 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++ Sbjct: 250 TTTIGKLAKKLQLDGKKVMLAAGDTFRAAAVEQLQVWGERNGIPVIAQHTGADSASVIFD 309 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQN Sbjct: 310 AVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVMGKLDESAPHEVLLVLDAGTGQN 369 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ Q F+ TGL +TK+DGTA+GG + + P+ ++GVGEGI+DL F A Sbjct: 370 AINQTRQFNQAVELTGLALTKLDGTAKGGVIFALAKQFGTPIRYIGVGEGIDDLRTFEAD 429 Query: 305 DFSAVIT 311 F + Sbjct: 430 AFVKALF 436 >gi|92115105|ref|YP_575033.1| signal recognition particle-docking protein FtsY [Chromohalobacter salexigens DSM 3043] gi|91798195|gb|ABE60334.1| signal recognition particle-docking protein FtsY [Chromohalobacter salexigens DSM 3043] Length = 501 Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats. Identities = 126/310 (40%), Positives = 189/310 (60%), Gaps = 3/310 (0%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63 + + W ++ G T EG+ + +++DD + E+LE L+ +D+G+ Sbjct: 184 QERPKKAGWFARIKAGLGKTRANFTEGLAGLFLGKKQIDDDLMEDLETQLLMADVGIEAT 243 Query: 64 QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNG 121 +I++ L + K++ + LY + E + +L P+++P P VIL+VGVNG Sbjct: 244 TEIIDRLTERVSRKELKDPQALYSALQEELQDLLDPVAQPLALPPKGQGPFVILMVGVNG 303 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT IGKL+++ G VMLAAGDTFR+AA++QLK+W +R V G+D+A++ Sbjct: 304 VGKTTTIGKLTQRFQREGRSVMLAAGDTFRAAAVEQLKVWGERNHVPVVAQHTGADSASV 363 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 Y+A A+A+ VDVLI DTAGRLHN S LM + K+ RV+ +LD APH V+ VLDA T Sbjct: 364 IYDALSAAKARGVDVLIADTAGRLHNKSHLMEELKKVRRVMAKLDEQAPHEVMLVLDAGT 423 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL Q F+ TG+ +TK+DGTA+GG + + P+ F+GVGE ++DL PF Sbjct: 424 GQNALSQASTFNEAVPVTGITLTKLDGTAKGGIIFALAKQLGTPIRFIGVGETLDDLRPF 483 Query: 302 VAKDFSAVIT 311 A+DF + + Sbjct: 484 AAEDFVSALF 493 >gi|254490588|ref|ZP_05103774.1| signal recognition particle-docking protein FtsY [Methylophaga thiooxidans DMS010] gi|224464332|gb|EEF80595.1| signal recognition particle-docking protein FtsY [Methylophaga thiooxydans DMS010] Length = 354 Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats. Identities = 130/316 (41%), Positives = 198/316 (62%), Gaps = 2/316 (0%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGV 60 + + E + +L +G + TS KL EG I+ + +DD + EELE LI +D+G+ Sbjct: 38 AEKPDQPEKTGFFGRLKQGLSRTSNKLTEGFASLILGRKTIDDDLLEELETQLITADLGI 97 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +I+ +L + K +S L+D + + + +L P S+P P+VIL+VG+ Sbjct: 98 DATNRIISDLTQRVARKQLSDVEALFDAMRDDMVTILQPSSQPLTVPDKPGPYVILMVGI 157 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+K+ G VMLAAGDTFR+AA++QL++W +R S + G+D+A Sbjct: 158 NGVGKTTTIGKLAKQFQQQGKSVMLAAGDTFRAAAVEQLQVWGERNSIPVIAQPKGADSA 217 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+++ D+LI DTAGRLH S LM + K+ RV+ ++D APH ++ VLDA Sbjct: 218 SVIFDALQAAKSRGADILIADTAGRLHTQSNLMEELKKVKRVMGKIDETAPHEIMLVLDA 277 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQNAL+Q + F+ G TG+ +TK+DGTA+GG + I +P+ ++GVGE I+DL Sbjct: 278 GTGQNALQQAQQFNDAVGVTGITLTKLDGTAKGGIIFAIADKTGLPIRYIGVGEKIDDLR 337 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + G D Sbjct: 338 PFDAADFVDALLGRED 353 >gi|154244370|ref|YP_001415328.1| signal recognition particle-docking protein FtsY [Xanthobacter autotrophicus Py2] gi|154158455|gb|ABS65671.1| signal recognition particle-docking protein FtsY [Xanthobacter autotrophicus Py2] Length = 529 Score = 335 bits (859), Expect = 6e-90, Method: Composition-based stats. Identities = 155/309 (50%), Positives = 218/309 (70%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 + + +L G A T+ L +GITD++S R+LD EELED+LIR+D+GV + Sbjct: 220 EPQPAKKGFWSRLASGLARTASSLGQGITDLVSKRKLDADTLEELEDVLIRADLGVETSM 279 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 +IVE + R+ K +S + V ++E + ++L+P+++P D +H+P V+L+VGVNG GK Sbjct: 280 RIVETVGKGRHDKMISPEEVKRLIAEEVERILIPVAQPLVVDTAHKPFVVLMVGVNGSGK 339 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+ + G KV+LAAGDTFR+AAI+QLK+W RT A + E GSDAA +A+E Sbjct: 340 TTTIGKLAAQWRTEGKKVVLAAGDTFRAAAIEQLKVWGTRTGATVIAREQGSDAAGVAHE 399 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A +A+A D+L++DTAGRL N + LMA + K++RV+K+L+P APH+VL VLDAT GQN Sbjct: 400 AVVEARAAGADILMVDTAGRLQNRTELMAELEKVVRVIKKLEPSAPHAVLLVLDATVGQN 459 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 AL QVE F +AG TG++MTK+DGTARGG L+ I HK+PV+ +GVGE DL+PF A+ Sbjct: 460 ALSQVEAFTRIAGVTGMVMTKLDGTARGGILVAIAAKHKLPVHLIGVGEAAEDLQPFAAR 519 Query: 305 DFSAVITGC 313 DF+ I G Sbjct: 520 DFARAIAGL 528 >gi|114705326|ref|ZP_01438234.1| GTP-binding signal recognition particle (SRP54) G-domain:ATP/GTP-binding site motif A (P-loop):AAA [Fulvimarina pelagi HTCC2506] gi|114540111|gb|EAU43231.1| GTP-binding signal recognition particle (SRP54) G-domain:ATP/GTP-binding site motif A (P-loop):AAA [Fulvimarina pelagi HTCC2506] Length = 403 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 167/307 (54%), Positives = 222/307 (72%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 A+ L W+++L + +S L IT I + RRLDD V ++ ED+LI++D+GV A +I Sbjct: 87 AAPKLPWLQRLREALGRSSSNLTGSITSIFTKRRLDDDVLQDFEDVLIQADLGVETAMRI 146 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 + L RY K++S V ++E I K L P+++P D PHVILVVGVNG GKTT Sbjct: 147 TDRLSEGRYGKEISGSEVKRVLAEEIEKTLDPVAQPLELDLDKVPHVILVVGVNGTGKTT 206 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+ K++ AG+ V LAAGDTFR+AA++QLKIW +RT+++ V +IG+DAA LA++A+ Sbjct: 207 TIGKLAAKLTRAGISVTLAAGDTFRAAAVEQLKIWGERTNSEVVARQIGADAAGLAFDAY 266 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A K DVLIIDTAGRL N + LMA + K+IRVL++ DP +PH+VLQ LDATTGQNA+ Sbjct: 267 DVAVKNKSDVLIIDTAGRLQNKAELMAELEKIIRVLQKRDPDSPHTVLQTLDATTGQNAM 326 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QV++F VAG GL+MTK+DGTARGG L+ I HK+PVYF+GVGEGI+DLEPF AKDF Sbjct: 327 NQVDIFRNVAGVNGLVMTKLDGTARGGILVAIGSKHKLPVYFVGVGEGIDDLEPFKAKDF 386 Query: 307 SAVITGC 313 + I G Sbjct: 387 ANAIAGI 393 >gi|253991203|ref|YP_003042559.1| cell division protein ftsy [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782653|emb|CAQ85817.1| cell division protein ftsy [Photorhabdus asymbiotica] Length = 494 Score = 334 bits (858), Expect = 7e-90, Method: Composition-based stats. Identities = 128/316 (40%), Positives = 196/316 (62%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 +S ++ + +L + T L G + +++DD + +ELE+ L+ +D+GV Sbjct: 180 VSKEQERPTKEGFFTRLKRSLVKTRQNLGSGFLSLFRGKKIDDDLFDELEEQLLIADVGV 239 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +KI+ L K++ LY + E + +L+ + KP + + P+VIL+VGV Sbjct: 240 DTTRKIIGSLTAHASRKELKDAEALYAKLKEEMSGILVKVDKPLDIE-GKTPYVILMVGV 298 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W +R V G+D A Sbjct: 299 NGVGKTTTIGKLARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQHTGADPA 358 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+AK +D+LI DTAGRL N S LM + K++RV+K+LD APH ++ LDA Sbjct: 359 SVIFDAMQSAKAKGIDILIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEIMLTLDA 418 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++FH G TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL Sbjct: 419 STGQNAISQAKLFHEAVGLTGISLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLR 478 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + D Sbjct: 479 PFKADDFIEALFARED 494 >gi|306842917|ref|ZP_07475553.1| signal recognition particle-docking protein FtsY [Brucella sp. BO2] gi|306286940|gb|EFM58460.1| signal recognition particle-docking protein FtsY [Brucella sp. BO2] Length = 470 Score = 334 bits (858), Expect = 8e-90, Method: Composition-based stats. Identities = 171/303 (56%), Positives = 225/303 (74%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 LSW +L +G A +S L + I I + R+LDD ++LED+LI++D+G+ A ++ + Sbjct: 166 KLSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDA 225 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L + RY KDVS + V +S I K+L P++KP D SH+PHVILVVGVNG GKTT IG Sbjct: 226 LASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIG 285 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+A+++A Sbjct: 286 KLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKA 345 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QV Sbjct: 346 KEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQV 405 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E+F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEG++DLEPF AKDF+ Sbjct: 406 EIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGVDDLEPFAAKDFARA 465 Query: 310 ITG 312 I G Sbjct: 466 IAG 468 >gi|306843384|ref|ZP_07475985.1| signal recognition particle-docking protein FtsY [Brucella sp. BO1] gi|306276075|gb|EFM57775.1| signal recognition particle-docking protein FtsY [Brucella sp. BO1] Length = 469 Score = 334 bits (858), Expect = 8e-90, Method: Composition-based stats. Identities = 170/303 (56%), Positives = 225/303 (74%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 LSW +L +G A +S L + I I + R+LDD ++LED+LI++D+G+ A ++ + Sbjct: 165 KLSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDA 224 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L + RY KDVS + V +S I K+L P++KP + SH+PHVILVVGVNG GKTT IG Sbjct: 225 LASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELNLSHKPHVILVVGVNGTGKTTTIG 284 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+A+++A Sbjct: 285 KLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKA 344 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QV Sbjct: 345 KEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQV 404 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E+F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEG++DLEPF AKDF+ Sbjct: 405 EIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGVDDLEPFAAKDFARA 464 Query: 310 ITG 312 I G Sbjct: 465 IAG 467 >gi|238921553|ref|YP_002935068.1| cell division protein FtsY, [Edwardsiella ictaluri 93-146] gi|238871122|gb|ACR70833.1| cell division protein FtsY, putative [Edwardsiella ictaluri 93-146] Length = 557 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 127/313 (40%), Positives = 194/313 (61%), Gaps = 2/313 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++ + +L + T L G + +++DD + +ELE+ LI +D+GV Sbjct: 246 EQEKPVKEGFFARLKRSLVKTRQNLGSGFFSLFRGKKIDDDLFDELEEQLIVADVGVETT 305 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 +KI++ L K++ LY + E + ++L + P + H+P VIL+VGVNGV Sbjct: 306 RKIIDSLTAHASRKELKDAEALYGKLKEEMGEILQKVDAPLDIS-GHQPFVILMVGVNGV 364 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+++ G VMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 365 GKTTTIGKLARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNHISVIAQHTGADSASVI 424 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+A+KVDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA+TG Sbjct: 425 FDAIQAAKARKVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEQAPHEVMLTIDASTG 484 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q +F+ G TG+ +TK+DGTA+GG + + IP+ ++GVGEGI DL PF Sbjct: 485 QNAVSQARLFNEAVGLTGITLTKLDGTAKGGVIFSVADRFGIPIRYIGVGEGIEDLRPFK 544 Query: 303 AKDFSAVITGCLD 315 A DF + D Sbjct: 545 ADDFIEALFARED 557 >gi|23502784|ref|NP_698911.1| signal recognition particle-docking protein FtsY [Brucella suis 1330] gi|62290788|ref|YP_222581.1| signal recognition particle-docking protein FtsY [Brucella abortus bv. 1 str. 9-941] gi|82700699|ref|YP_415273.1| GTP-binding signal recognition particle [Brucella melitensis biovar Abortus 2308] gi|254708922|ref|ZP_05170733.1| cell division protein FtsY [Brucella pinnipedialis B2/94] gi|256370336|ref|YP_003107847.1| signal recognition particle-docking protein FtsY [Brucella microti CCM 4915] gi|260546052|ref|ZP_05821792.1| cell division protein FtsY [Brucella abortus NCTC 8038] gi|260758838|ref|ZP_05871186.1| signal recognition particle-docking protein FtsY [Brucella abortus bv. 4 str. 292] gi|260760562|ref|ZP_05872905.1| signal recognition particle-docking protein FtsY [Brucella abortus bv. 2 str. 86/8/59] gi|261315022|ref|ZP_05954219.1| signal recognition particle-docking protein FtsY [Brucella pinnipedialis M163/99/10] gi|261321389|ref|ZP_05960586.1| signal recognition particle-docking protein FtsY [Brucella ceti M644/93/1] gi|261751083|ref|ZP_05994792.1| signal recognition particle-docking protein FtsY [Brucella suis bv. 5 str. 513] gi|297247175|ref|ZP_06930893.1| signal recognition particle receptor [Brucella abortus bv. 5 str. B3196] gi|23348805|gb|AAN30826.1| signal recognition particle-docking protein FtsY [Brucella suis 1330] gi|62196920|gb|AAX75220.1| FtsY, signal recognition particle-docking protein [Brucella abortus bv. 1 str. 9-941] gi|82616800|emb|CAJ11890.1| GTP-binding signal recognition particle (SRP54) G-domain:ATP/GTP-binding site motif A (P-loop):AAA ATPase:Cell division trans [Brucella melitensis biovar Abortus 2308] gi|256000499|gb|ACU48898.1| signal recognition particle-docking protein FtsY [Brucella microti CCM 4915] gi|260096159|gb|EEW80035.1| cell division protein FtsY [Brucella abortus NCTC 8038] gi|260669156|gb|EEX56096.1| signal recognition particle-docking protein FtsY [Brucella abortus bv. 4 str. 292] gi|260670994|gb|EEX57815.1| signal recognition particle-docking protein FtsY [Brucella abortus bv. 2 str. 86/8/59] gi|261294079|gb|EEX97575.1| signal recognition particle-docking protein FtsY [Brucella ceti M644/93/1] gi|261304048|gb|EEY07545.1| signal recognition particle-docking protein FtsY [Brucella pinnipedialis M163/99/10] gi|261740836|gb|EEY28762.1| signal recognition particle-docking protein FtsY [Brucella suis bv. 5 str. 513] gi|297174344|gb|EFH33691.1| signal recognition particle receptor [Brucella abortus bv. 5 str. B3196] Length = 463 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 172/303 (56%), Positives = 225/303 (74%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 LSW +L +G A +S L + I I + R+LDD ++LED+LI++D+G+ A ++ + Sbjct: 159 KLSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDA 218 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L + RY KDVS + V +S I K+L P++KP D SH+PHVILVVGVNG GKTT IG Sbjct: 219 LASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIG 278 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+A+++A Sbjct: 279 KLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKA 338 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QV Sbjct: 339 KEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQV 398 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E+F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEGI+DLEPF AKDF+ Sbjct: 399 EIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARA 458 Query: 310 ITG 312 I G Sbjct: 459 IAG 461 >gi|256059908|ref|ZP_05450094.1| GTP-binding signal recognition particle [Brucella neotomae 5K33] gi|261323880|ref|ZP_05963077.1| signal recognition particle-docking protein FtsY [Brucella neotomae 5K33] gi|261299860|gb|EEY03357.1| signal recognition particle-docking protein FtsY [Brucella neotomae 5K33] Length = 465 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 172/303 (56%), Positives = 224/303 (73%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 LSW +L +G A +S L I I + R+LDD ++LED+LI++D+G+ A ++ + Sbjct: 161 KLSWFERLRRGLARSSSSLSNSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDA 220 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L + RY KDVS + V +S I K+L P++KP D SH+PHVILVVGVNG GKTT IG Sbjct: 221 LASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIG 280 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+A+++A Sbjct: 281 KLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKA 340 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QV Sbjct: 341 KEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQV 400 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E+F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEGI+DLEPF AKDF+ Sbjct: 401 EIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARA 460 Query: 310 ITG 312 I G Sbjct: 461 IAG 463 >gi|148560595|ref|YP_001259756.1| cell division protein FtsY [Brucella ovis ATCC 25840] gi|163843957|ref|YP_001628361.1| signal recognition particle-docking protein FtsY [Brucella suis ATCC 23445] gi|189025002|ref|YP_001935770.1| cell division protein FtsY [Brucella abortus S19] gi|237816295|ref|ZP_04595288.1| signal recognition particle-docking protein FtsY [Brucella abortus str. 2308 A] gi|254690075|ref|ZP_05153329.1| GTP-binding signal recognition particle [Brucella abortus bv. 6 str. 870] gi|254694563|ref|ZP_05156391.1| GTP-binding signal recognition particle [Brucella abortus bv. 3 str. Tulya] gi|254696188|ref|ZP_05158016.1| GTP-binding signal recognition particle [Brucella abortus bv. 2 str. 86/8/59] gi|254700575|ref|ZP_05162403.1| GTP-binding signal recognition particle [Brucella suis bv. 5 str. 513] gi|254704945|ref|ZP_05166773.1| GTP-binding signal recognition particle [Brucella suis bv. 3 str. 686] gi|254707541|ref|ZP_05169369.1| GTP-binding signal recognition particle [Brucella pinnipedialis M163/99/10] gi|254713651|ref|ZP_05175462.1| GTP-binding signal recognition particle [Brucella ceti M644/93/1] gi|254715995|ref|ZP_05177806.1| GTP-binding signal recognition particle [Brucella ceti M13/05/1] gi|254731106|ref|ZP_05189684.1| GTP-binding signal recognition particle [Brucella abortus bv. 4 str. 292] gi|256030448|ref|ZP_05444062.1| GTP-binding signal recognition particle [Brucella pinnipedialis M292/94/1] gi|256158432|ref|ZP_05456330.1| GTP-binding signal recognition particle [Brucella ceti M490/95/1] gi|256253852|ref|ZP_05459388.1| GTP-binding signal recognition particle [Brucella ceti B1/94] gi|256258328|ref|ZP_05463864.1| GTP-binding signal recognition particle [Brucella abortus bv. 9 str. C68] gi|260755613|ref|ZP_05867961.1| signal recognition particle-docking protein FtsY [Brucella abortus bv. 6 str. 870] gi|260884639|ref|ZP_05896253.1| signal recognition particle-docking protein FtsY [Brucella abortus bv. 9 str. C68] gi|261214887|ref|ZP_05929168.1| signal recognition particle-docking protein FtsY [Brucella abortus bv. 3 str. Tulya] gi|261217763|ref|ZP_05932044.1| signal recognition particle-docking protein FtsY [Brucella ceti M13/05/1] gi|261220990|ref|ZP_05935271.1| signal recognition particle-docking protein FtsY [Brucella ceti B1/94] gi|261316421|ref|ZP_05955618.1| signal recognition particle-docking protein FtsY [Brucella pinnipedialis B2/94] gi|261755645|ref|ZP_05999354.1| signal recognition particle-docking protein FtsY [Brucella suis bv. 3 str. 686] gi|265987492|ref|ZP_06100049.1| signal recognition particle-docking protein FtsY [Brucella pinnipedialis M292/94/1] gi|265996949|ref|ZP_06109506.1| signal recognition particle-docking protein FtsY [Brucella ceti M490/95/1] gi|294851176|ref|ZP_06791849.1| signal recognition particle receptor [Brucella sp. NVSL 07-0026] gi|148371852|gb|ABQ61831.1| cell division protein FtsY [Brucella ovis ATCC 25840] gi|163674680|gb|ABY38791.1| signal recognition particle-docking protein FtsY [Brucella suis ATCC 23445] gi|189020574|gb|ACD73296.1| cell division protein FtsY [Brucella abortus S19] gi|237788362|gb|EEP62577.1| signal recognition particle-docking protein FtsY [Brucella abortus str. 2308 A] gi|260675721|gb|EEX62542.1| signal recognition particle-docking protein FtsY [Brucella abortus bv. 6 str. 870] gi|260874167|gb|EEX81236.1| signal recognition particle-docking protein FtsY [Brucella abortus bv. 9 str. C68] gi|260916494|gb|EEX83355.1| signal recognition particle-docking protein FtsY [Brucella abortus bv. 3 str. Tulya] gi|260919574|gb|EEX86227.1| signal recognition particle-docking protein FtsY [Brucella ceti B1/94] gi|260922852|gb|EEX89420.1| signal recognition particle-docking protein FtsY [Brucella ceti M13/05/1] gi|261295644|gb|EEX99140.1| signal recognition particle-docking protein FtsY [Brucella pinnipedialis B2/94] gi|261745398|gb|EEY33324.1| signal recognition particle-docking protein FtsY [Brucella suis bv. 3 str. 686] gi|262551417|gb|EEZ07407.1| signal recognition particle-docking protein FtsY [Brucella ceti M490/95/1] gi|264659689|gb|EEZ29950.1| signal recognition particle-docking protein FtsY [Brucella pinnipedialis M292/94/1] gi|294819765|gb|EFG36764.1| signal recognition particle receptor [Brucella sp. NVSL 07-0026] Length = 465 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 172/303 (56%), Positives = 225/303 (74%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 LSW +L +G A +S L + I I + R+LDD ++LED+LI++D+G+ A ++ + Sbjct: 161 KLSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDA 220 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L + RY KDVS + V +S I K+L P++KP D SH+PHVILVVGVNG GKTT IG Sbjct: 221 LASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIG 280 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+A+++A Sbjct: 281 KLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKA 340 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QV Sbjct: 341 KEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQV 400 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E+F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEGI+DLEPF AKDF+ Sbjct: 401 EIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARA 460 Query: 310 ITG 312 I G Sbjct: 461 IAG 463 >gi|300114349|ref|YP_003760924.1| signal recognition particle-docking protein FtsY [Nitrosococcus watsonii C-113] gi|299540286|gb|ADJ28603.1| signal recognition particle-docking protein FtsY [Nitrosococcus watsonii C-113] Length = 352 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 131/307 (42%), Positives = 194/307 (63%), Gaps = 2/307 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 A E S ++L + T L GI D+ + + +DD + EE+E L+ +D+GV Q Sbjct: 27 AREKQSLFKRLRERLGRTRNNLTGGIADLMLGKKSIDDELLEEIEAQLLIADVGVEATQA 86 Query: 66 IVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 I+++L + K + L + E + +L P ++P + +P VIL+VGVNGVGK Sbjct: 87 IIKDLTVRTSRKQLQDAEALMAALRENMQALLTPCNQPLIIPAAIQPFVILMVGVNGVGK 146 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+KK G VMLAAGDTFR+AA++QL++W +R + G+D+A++ ++ Sbjct: 147 TTTIGKLAKKFQAEGRSVMLAAGDTFRAAAVEQLQVWGERNQVPVMAQHGGADSASVIFD 206 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + AQA+ +DVLI DTAGRLH LM + K+ RV+ +++PHAPH ++ +DA TGQN Sbjct: 207 AVQSAQARGIDVLIADTAGRLHTQINLMEELKKIKRVMGKVNPHAPHEIMLTVDAGTGQN 266 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 AL Q + FH G TG+I+TK+DGTA+GG + I IP+ F+GVGEGI+DL PF A+ Sbjct: 267 ALNQAKQFHEAVGLTGIILTKLDGTAKGGVIFAIAKKMGIPIRFIGVGEGIDDLRPFNAE 326 Query: 305 DFSAVIT 311 +F + Sbjct: 327 EFVDALL 333 >gi|265993697|ref|ZP_06106254.1| signal recognition particle-docking protein FtsY [Brucella melitensis bv. 3 str. Ether] gi|262764678|gb|EEZ10599.1| signal recognition particle-docking protein FtsY [Brucella melitensis bv. 3 str. Ether] Length = 463 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 171/303 (56%), Positives = 224/303 (73%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 LSW +L +G A +S L + I I + R+LDD ++LED+LI++D+G+ A ++ + Sbjct: 159 KLSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDA 218 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L + RY KDV + V +S I K+L P++KP D SH+PHVILVVGVNG GKTT IG Sbjct: 219 LASGRYGKDVPGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIG 278 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+A+++A Sbjct: 279 KLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKA 338 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QV Sbjct: 339 KEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQV 398 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E+F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEGI+DLEPF AKDF+ Sbjct: 399 EIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARA 458 Query: 310 ITG 312 I G Sbjct: 459 IAG 461 >gi|163869370|ref|YP_001610626.1| cell division protein [Bartonella tribocorum CIP 105476] gi|161019073|emb|CAK02631.1| cell division protein [Bartonella tribocorum CIP 105476] Length = 390 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 162/312 (51%), Positives = 222/312 (71%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 + V + +W +L KG + +S +L I+D+ R+LD+ +ELED+LI++D+GV Sbjct: 76 LPEPSVEQKKTAWFGRLRKGLSLSSQRLSGSISDLFLKRKLDEETLQELEDILIQADLGV 135 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 A +I L + RY KD+S + V++ I K+L P++ P D SH+PHVIL+VGVN Sbjct: 136 ETATRITNTLASSRYGKDLSSDDIHTIVADEIKKVLEPVAMPLELDLSHKPHVILLVGVN 195 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+ K+++ GL VMLAAGDTFR+AAI+QL IW R + + +++G+DAA+ Sbjct: 196 GTGKTTTIGKLAAKLTEGGLNVMLAAGDTFRAAAIEQLHIWGKRIDSPVISTKLGADAAS 255 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LA++AF++A+ DVLIIDTAGRL N S LM + K+IRVL++ P APH++LQ LDAT Sbjct: 256 LAFDAFEKAKKANSDVLIIDTAGRLQNKSELMDELAKIIRVLRKHSPQAPHTILQTLDAT 315 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNAL QVE+F +AG GL+MTK+DGTARGG LI I HK+P+YF+GVGE I DL+P Sbjct: 316 TGQNALSQVEIFRNIAGVNGLVMTKLDGTARGGILIAIAAKHKLPIYFIGVGENIEDLQP 375 Query: 301 FVAKDFSAVITG 312 F A DF+ I G Sbjct: 376 FSASDFAETIVG 387 >gi|225853372|ref|YP_002733605.1| signal recognition particle-docking protein FtsY [Brucella melitensis ATCC 23457] gi|256112266|ref|ZP_05453187.1| signal recognition particle-docking protein FtsY [Brucella melitensis bv. 3 str. Ether] gi|256263146|ref|ZP_05465678.1| cell division protein FtsY [Brucella melitensis bv. 2 str. 63/9] gi|225641737|gb|ACO01651.1| signal recognition particle-docking protein FtsY [Brucella melitensis ATCC 23457] gi|263093049|gb|EEZ17199.1| cell division protein FtsY [Brucella melitensis bv. 2 str. 63/9] gi|326409935|gb|ADZ67000.1| signal recognition particle-docking protein FtsY [Brucella melitensis M28] gi|326539648|gb|ADZ87863.1| signal recognition particle-docking protein FtsY [Brucella melitensis M5-90] Length = 465 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 171/303 (56%), Positives = 224/303 (73%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 LSW +L +G A +S L + I I + R+LDD ++LED+LI++D+G+ A ++ + Sbjct: 161 KLSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDA 220 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L + RY KDV + V +S I K+L P++KP D SH+PHVILVVGVNG GKTT IG Sbjct: 221 LASGRYGKDVPGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIG 280 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+A+++A Sbjct: 281 KLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKA 340 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QV Sbjct: 341 KEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQV 400 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E+F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEGI+DLEPF AKDF+ Sbjct: 401 EIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARA 460 Query: 310 ITG 312 I G Sbjct: 461 IAG 463 >gi|77165401|ref|YP_343926.1| cell division transporter substrate-binding protein FtsY [Nitrosococcus oceani ATCC 19707] gi|254433367|ref|ZP_05046875.1| signal recognition particle-docking protein FtsY [Nitrosococcus oceani AFC27] gi|76883715|gb|ABA58396.1| signal recognition particle-docking protein FtsY [Nitrosococcus oceani ATCC 19707] gi|207089700|gb|EDZ66971.1| signal recognition particle-docking protein FtsY [Nitrosococcus oceani AFC27] Length = 362 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 129/312 (41%), Positives = 196/312 (62%), Gaps = 2/312 (0%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGV 60 S++ A E S ++L T L GI D+ + + +DD + EE+E L+ +D+GV Sbjct: 32 SSETGAGEKQSLFKRLRDRLGRTRGNLTGGIADLMLGKKSIDDELLEEIETQLLIADLGV 91 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 Q I+E+L + + + L + + E + ++L P ++P + +P VIL+VGV Sbjct: 92 EATQAIIEDLTIRTSREQLQDAEALMEALRENMQELLTPCNQPLIIPAAIKPFVILMVGV 151 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+KK G VMLAAGDTFR+AA++QL++W +R + G+D+A Sbjct: 152 NGVGKTTTIGKLAKKFQAEGRSVMLAAGDTFRAAAVEQLQVWGERNQVPVMAQHSGADSA 211 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + AQ + +DVLI DTAGRLH + LM + K+ RV+ +++PHAPH ++ +DA Sbjct: 212 SVIFDAVQSAQVRGIDVLIADTAGRLHTQTNLMEELKKVKRVMGKVNPHAPHEIMLTVDA 271 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQNAL Q FH TG+I+TK+DGTA+GG + I +P+ F+GVGEGI+DL Sbjct: 272 GTGQNALNQARQFHEAVDLTGIILTKLDGTAKGGVIFAIAKKMGLPIRFIGVGEGIDDLR 331 Query: 300 PFVAKDFSAVIT 311 PF A++F + Sbjct: 332 PFNAEEFVNALL 343 >gi|83592517|ref|YP_426269.1| signal recognition particle-docking protein FtsY [Rhodospirillum rubrum ATCC 11170] gi|83575431|gb|ABC21982.1| signal recognition particle-docking protein FtsY [Rhodospirillum rubrum ATCC 11170] Length = 506 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 145/316 (45%), Positives = 220/316 (69%), Gaps = 4/316 (1%) Query: 3 NQKVASE-SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + VA +S+ +L G + TS KL GI ++S R+LDD E+LEDLLI +DIGV Sbjct: 194 PEPVAEPVKVSFFARLRGGLSRTSGKLVGGIMGLVSERKLDDQALEDLEDLLITADIGVE 253 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 A K+ L +R+ K+V+ + + ++ I +L P+++P D S +PHV+LVVGVNG Sbjct: 254 TAGKLTRSLAKERFGKNVTGEEIRGHFADEIATILGPVARPLEIDGSLKPHVVLVVGVNG 313 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGK++ ++ +V+LAAGDTFR+AA++QL+IW DRT + + + G+D+A L Sbjct: 314 SGKTTTIGKIANQLVHENKRVLLAAGDTFRAAAVEQLRIWGDRTGCEVIARDTGADSAGL 373 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 A++A ++A+A+ DVL+IDTAGRLHN + LM + K++RVL+++DP PH+ LQVLDAT Sbjct: 374 AFDALQKARAEGYDVLLIDTAGRLHNKTELMEELKKVVRVLRKIDPAVPHTCLQVLDATV 433 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA +QV++F + +GL+MTK+DGTA+GG ++ + +PV+++G+GEGI+DL PF Sbjct: 434 GQNAHQQVKVFQEMTDVSGLVMTKLDGTAKGGVVVALADKFGLPVHYVGIGEGIDDLRPF 493 Query: 302 VAKDFSAVITGCLDYG 317 A+DF+ G +D Sbjct: 494 SARDFAR---GLMDLD 506 >gi|225628133|ref|ZP_03786168.1| signal recognition particle-docking protein FtsY [Brucella ceti str. Cudo] gi|260169358|ref|ZP_05756169.1| signal recognition particle-docking protein FtsY [Brucella sp. F5/99] gi|261758876|ref|ZP_06002585.1| cell division protein FtsY [Brucella sp. F5/99] gi|225616958|gb|EEH14005.1| signal recognition particle-docking protein FtsY [Brucella ceti str. Cudo] gi|261738860|gb|EEY26856.1| cell division protein FtsY [Brucella sp. F5/99] Length = 465 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 171/303 (56%), Positives = 225/303 (74%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 LSW +L +G A +S L + I I + R+LDD ++LED+LI++D+G+ A ++ + Sbjct: 161 KLSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDA 220 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L + RY KDVS + V +S I K+L P++KP D SH+PHVILVVGVNG GKTT IG Sbjct: 221 LASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIG 280 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+A+++A Sbjct: 281 KLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKA 340 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QV Sbjct: 341 KEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQV 400 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 ++F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEGI+DLEPF AKDF+ Sbjct: 401 DIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARA 460 Query: 310 ITG 312 I G Sbjct: 461 IAG 463 >gi|170719541|ref|YP_001747229.1| signal recognition particle-docking protein FtsY [Pseudomonas putida W619] gi|169757544|gb|ACA70860.1| signal recognition particle-docking protein FtsY [Pseudomonas putida W619] Length = 514 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 129/304 (42%), Positives = 191/304 (62%), Gaps = 2/304 (0%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVE 68 + +L +G + TS + EG+ + ++ +DD + +E+E L+ +D+GV IV+ Sbjct: 205 KPGFFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSTIVQ 264 Query: 69 ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L K K ++ LY + E + +L P+ +P ++P+VILVVGVNG GKTT Sbjct: 265 NLTQKVARKQLADADALYKSLQEELAALLRPVEQPLKIQAQNKPYVILVVGVNGAGKTTT 324 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + Sbjct: 325 IGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFDAVQ 384 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+A+ VDVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Sbjct: 385 AAKARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDAEAPHEVLLVLDAGTGQNAIS 444 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 Q + F+ TGL +TK+DGTA+GG + + IP+ F+GVGEGI+DL F A+ F Sbjct: 445 QAKYFNQSVELTGLALTKLDGTAKGGVIFALAKQFNIPIRFIGVGEGIDDLRTFEAEPFV 504 Query: 308 AVIT 311 + Sbjct: 505 KALF 508 >gi|312114981|ref|YP_004012577.1| signal recognition particle-docking protein FtsY [Rhodomicrobium vannielii ATCC 17100] gi|311220110|gb|ADP71478.1| signal recognition particle-docking protein FtsY [Rhodomicrobium vannielii ATCC 17100] Length = 409 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 161/306 (52%), Positives = 221/306 (72%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 + W+++L +G TS KL EGIT + + R+LDD EELEDLLI+SD+G+AV+ ++ Sbjct: 102 EKPRVGWLQRLKQGLTKTSSKLTEGITGVFTKRKLDDDTLEELEDLLIQSDLGLAVSARV 161 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 + L RY D+S + V ++ + K+L P+++P D S +P+V+L+VGVNG GKTT Sbjct: 162 IAALKKARYNSDISPEEVRAILAAEVEKVLGPVAQPLEIDTSKKPYVVLMVGVNGTGKTT 221 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGK +K+ ++ GLKVMLAAGDTFR+AAI+QLK+W +RT A V G+DAA LA++A Sbjct: 222 TIGKYAKQFTEQGLKVMLAAGDTFRAAAIEQLKVWGERTGAPVVSGAQGADAAGLAFDAL 281 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 +A+ + D+LIIDTAGRL N + LMA + K+IRV++++DP APHSVL LDATTGQNAL Sbjct: 282 TRAKKEGADLLIIDTAGRLQNKTGLMAELEKIIRVIRKVDPEAPHSVLLTLDATTGQNAL 341 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QVE+F AG TGLIMTK+DGTARGG L+ I H +PV+ +GVGE +DL+ F A+DF Sbjct: 342 SQVEIFGKTAGVTGLIMTKLDGTARGGILVAIAAKHGLPVHAIGVGESASDLQAFSAQDF 401 Query: 307 SAVITG 312 + I G Sbjct: 402 ARAIAG 407 >gi|265991964|ref|ZP_06104521.1| signal recognition particle-docking protein FtsY [Brucella melitensis bv. 1 str. Rev.1] gi|263003030|gb|EEZ15323.1| signal recognition particle-docking protein FtsY [Brucella melitensis bv. 1 str. Rev.1] Length = 463 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 170/303 (56%), Positives = 223/303 (73%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 LSW +L +G A +S L + I I + R+LDD ++LED+LI++D+G+ A ++ + Sbjct: 159 KLSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDA 218 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L + Y KDV + V +S I K+L P++KP D SH+PHVILVVGVNG GKTT IG Sbjct: 219 LASGHYGKDVPGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIG 278 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+A+++A Sbjct: 279 KLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKA 338 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QV Sbjct: 339 KEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQV 398 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E+F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEGI+DLEPF AKDF+ Sbjct: 399 EIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARA 458 Query: 310 ITG 312 I G Sbjct: 459 IAG 461 >gi|182677358|ref|YP_001831504.1| signal recognition particle-docking protein FtsY [Beijerinckia indica subsp. indica ATCC 9039] gi|182633241|gb|ACB94015.1| signal recognition particle-docking protein FtsY [Beijerinckia indica subsp. indica ATCC 9039] Length = 408 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 156/314 (49%), Positives = 214/314 (68%), Gaps = 1/314 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 + SW +L G + +S + G+ DI + R+LD+ + E+LED+LIR+D+G AVAQ+I Sbjct: 95 EAPQGSWWTRLRDGLSRSSSSIGTGLVDIFTKRKLDEAMLEDLEDILIRADLGTAVAQRI 154 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 E + RY DV + V ++ + ++L P +KP D + +P VILVVGVNG GKTT Sbjct: 155 TEAVGKGRYNWDVDPREVKTILASEVEQVLTPYAKPLVIDTTKKPFVILVVGVNGSGKTT 214 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+ + S G KVMLAAGDTFR+AAI+QL+IW R + GSDA+ LA++A Sbjct: 215 TIGKLAAQFSREGHKVMLAAGDTFRAAAIEQLQIWGQRLGCTVIARPQGSDASGLAFDAI 274 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 K A+++ D+L++DTAGRL N + LM + K+IRV+++ D APH+VL VLDAT GQNAL Sbjct: 275 KTARSEGADLLLMDTAGRLQNRAELMDELEKIIRVMRKQDEEAPHAVLLVLDATVGQNAL 334 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QVE+F VAG TGL+MTK+DGTARGG L+ I K+P++F+GVGE ++DLEPF A DF Sbjct: 335 NQVEIFGRVAGVTGLVMTKLDGTARGGILVAITEKFKLPIHFIGVGEKVDDLEPFAASDF 394 Query: 307 SAVITGCLDYGEEK 320 I G D E + Sbjct: 395 GLAIAGL-DKDESQ 407 >gi|256045538|ref|ZP_05448421.1| signal recognition particle receptor FTSY [Brucella melitensis bv. 1 str. Rev.1] gi|260562848|ref|ZP_05833334.1| cell division protein FtsY [Brucella melitensis bv. 1 str. 16M] gi|260152864|gb|EEW87956.1| cell division protein FtsY [Brucella melitensis bv. 1 str. 16M] Length = 465 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 170/303 (56%), Positives = 223/303 (73%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 LSW +L +G A +S L + I I + R+LDD ++LED+LI++D+G+ A ++ + Sbjct: 161 KLSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDA 220 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L + Y KDV + V +S I K+L P++KP D SH+PHVILVVGVNG GKTT IG Sbjct: 221 LASGHYGKDVPGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIG 280 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+A+++A Sbjct: 281 KLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKA 340 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QV Sbjct: 341 KEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQV 400 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E+F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEGI+DLEPF AKDF+ Sbjct: 401 EIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARA 460 Query: 310 ITG 312 I G Sbjct: 461 IAG 463 >gi|238789411|ref|ZP_04633197.1| Cell division protein ftsY [Yersinia frederiksenii ATCC 33641] gi|238722554|gb|EEQ14208.1| Cell division protein ftsY [Yersinia frederiksenii ATCC 33641] Length = 520 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 127/315 (40%), Positives = 194/315 (61%), Gaps = 2/315 (0%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + ++ + +L + T L G + S +++DD + +ELE+ L+ +D+GV Sbjct: 207 AQEQERPTKEGFFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFDELEEQLLIADVGVE 266 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 +KI+ L K + LY + E + ++L + KP + P+VIL+VGVN Sbjct: 267 TTRKIITSLTEHASRKQLKDAEALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVN 325 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W DR V G+D+A+ Sbjct: 326 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNKIAVVAQHTGADSAS 385 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++A + A+A+ +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+ Sbjct: 386 VIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDAS 445 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNA+ Q ++F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL P Sbjct: 446 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRP 505 Query: 301 FVAKDFSAVITGCLD 315 F A DF + D Sbjct: 506 FKADDFIEALFARED 520 >gi|13473652|ref|NP_105220.1| cell division protein FtsY [Mesorhizobium loti MAFF303099] gi|14024402|dbj|BAB51006.1| mlr4320 [Mesorhizobium loti MAFF303099] Length = 313 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 165/306 (53%), Positives = 224/306 (73%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 + SW +++ G A +S +L I + + R+LD+ ++LED+LIR+D+G+ A +I Sbjct: 6 PAPRRSWFQRMRDGLARSSRELTGNIAGVFTKRKLDEDTLQDLEDVLIRADLGMETALRI 65 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 + L RY KDVS V ++ + K+L P+++P D SH+PHVILVVGVNG GKTT Sbjct: 66 TDALAASRYGKDVSDTDVRTVMAAEVEKVLTPVARPLELDLSHKPHVILVVGVNGTGKTT 125 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+ K++D GL VMLAAGDTFR+AAI+QLKIW +RT + + S++G+DAA LAY+AF Sbjct: 126 TIGKLAAKLTDGGLSVMLAAGDTFRAAAIEQLKIWGERTKSPVIASKLGADAAGLAYDAF 185 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 ++A+ DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ +DATTGQNAL Sbjct: 186 EKAKEAGSDVLIIDTAGRLQNKTELMAELEKIVRVLGKLDPEAPHTVLQTVDATTGQNAL 245 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QVE+F +AG GL+MTK+DGTARGG L+ I HK+PVYF+GVGE ++DLEPF A +F Sbjct: 246 NQVEIFRNIAGVNGLVMTKLDGTARGGILVAIAAKHKLPVYFIGVGEQVDDLEPFSASEF 305 Query: 307 SAVITG 312 + I G Sbjct: 306 ARAIAG 311 >gi|254717993|ref|ZP_05179804.1| cell division protein FtsY [Brucella sp. 83/13] gi|265982939|ref|ZP_06095674.1| signal recognition particle-docking protein FtsY [Brucella sp. 83/13] gi|306839772|ref|ZP_07472573.1| signal recognition particle-docking protein FtsY [Brucella sp. NF 2653] gi|264661531|gb|EEZ31792.1| signal recognition particle-docking protein FtsY [Brucella sp. 83/13] gi|306405127|gb|EFM61405.1| signal recognition particle-docking protein FtsY [Brucella sp. NF 2653] Length = 475 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 170/303 (56%), Positives = 224/303 (73%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 LSW +L +G A +S L + I I + R+LDD ++LED+LI++D+G+ A ++ + Sbjct: 171 KLSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDA 230 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L + RY KDVS + V +S I K+L P++KP D SH+PHVILVVGVNG GKTT IG Sbjct: 231 LASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIG 290 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+ +++A Sbjct: 291 KLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDTWEKA 350 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QV Sbjct: 351 KEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQV 410 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E+F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEG++DLEPF AKDF+ Sbjct: 411 EIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGVDDLEPFAAKDFARA 470 Query: 310 ITG 312 I G Sbjct: 471 IAG 473 >gi|212711016|ref|ZP_03319144.1| hypothetical protein PROVALCAL_02085 [Providencia alcalifaciens DSM 30120] gi|212686184|gb|EEB45712.1| hypothetical protein PROVALCAL_02085 [Providencia alcalifaciens DSM 30120] Length = 601 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 128/309 (41%), Positives = 193/309 (62%), Gaps = 2/309 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++ + + +L KG T L G + +++DD + +ELE+ L+ +D+GV Sbjct: 290 EQEKPKKEGFFSRLKKGLLKTRQNLGSGFLGLFKGKKIDDDLFDELEEQLLIADVGVETT 349 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 +KI++ L K++ LY + E + +L + KP + +P+VIL+VGVNGV Sbjct: 350 RKIIDNLTHHASRKELKDAEALYGKLREEMSDILSTVDKPLVIE-GKKPYVILMVGVNGV 408 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+++ G VMLAAGDTFR+AA++QL++W +R V G+D A++ Sbjct: 409 GKTTTIGKLARQYQSEGKSVMLAAGDTFRAAAVEQLQVWGERNKISVVAQHTGADPASVI 468 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + AQAK DVLI DTAGRL N + LM + K++RV+K+LD APH ++ LDA+TG Sbjct: 469 YDAIQSAQAKGADVLIADTAGRLQNKAHLMEELKKIVRVMKKLDESAPHEIMLTLDASTG 528 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F+ G TG+ +TK+DGTA+GG + I IP+ ++G+GEGI DL PF Sbjct: 529 QNAVSQAKIFNDAVGLTGITLTKLDGTAKGGVIFSIADQFGIPIRYIGIGEGIEDLRPFK 588 Query: 303 AKDFSAVIT 311 A DF + Sbjct: 589 ADDFIEALF 597 >gi|188582090|ref|YP_001925535.1| signal recognition particle-docking protein FtsY [Methylobacterium populi BJ001] gi|179345588|gb|ACB81000.1| signal recognition particle-docking protein FtsY [Methylobacterium populi BJ001] Length = 493 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 153/307 (49%), Positives = 206/307 (67%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 +E W +LT G TS L + +T + + R+LD E+LED LI++D GV A ++ Sbjct: 184 GTEKQGWWSRLTAGMRRTSSALSDRVTGLFTKRKLDATTLEDLEDALIQADFGVETAMRM 243 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 E + RY K +S V ++ I + L P++ P D + +P+VIL VGVNG GKTT Sbjct: 244 SEAVGKGRYEKGISPDEVRAILATEIERALEPVATPIAIDSAKKPYVILTVGVNGAGKTT 303 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKLS K G VMLAAGDTFR+AAI+QL++W +RT + GSDAA LA++AF Sbjct: 304 TIGKLSLKFKAEGRSVMLAAGDTFRAAAIEQLRVWGERTGTPVISRAQGSDAAGLAFDAF 363 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 K+A+ DVL+IDTAGRL N + LMA + K++RV+++LDP APH+ L VLDAT GQNAL Sbjct: 364 KEARENGTDVLLIDTAGRLQNKAGLMAELEKIVRVIRKLDPEAPHATLLVLDATVGQNAL 423 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QVE+F A +GL+MTK+DGTARGG L+ + +PV+F+GVGEG+ DLEPF A+DF Sbjct: 424 SQVELFSQAAPVSGLVMTKLDGTARGGILVALAAKFGLPVHFIGVGEGVEDLEPFAARDF 483 Query: 307 SAVITGC 313 + ITG Sbjct: 484 ARAITGL 490 >gi|330812382|ref|YP_004356844.1| signal recognition particle receptor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380490|gb|AEA71840.1| putative signal recognition particle receptor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 477 Score = 332 bits (851), Expect = 5e-89, Method: Composition-based stats. Identities = 125/307 (40%), Positives = 190/307 (61%), Gaps = 2/307 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQK 65 + + +L +G + TS + EG+ + ++ +DD + E++E L+ +D+GV Sbjct: 165 EENKVGFFARLKQGLSKTSASIGEGMASLFLGKKVIDDELLEDIETRLLTADVGVEATSV 224 Query: 66 IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 I++ L K K ++ LY + + +L P+ KP ++P VILVVGVNG GK Sbjct: 225 IIQSLTQKVARKQLTDADALYKSLQGELTSLLKPVEKPLVIASQNKPFVILVVGVNGAGK 284 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++ Sbjct: 285 TTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVIFD 344 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQN Sbjct: 345 AVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQN 404 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A+ Sbjct: 405 AINQAKQFNQTVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAE 464 Query: 305 DFSAVIT 311 F + Sbjct: 465 PFVQALF 471 >gi|183598034|ref|ZP_02959527.1| hypothetical protein PROSTU_01390 [Providencia stuartii ATCC 25827] gi|188022813|gb|EDU60853.1| hypothetical protein PROSTU_01390 [Providencia stuartii ATCC 25827] Length = 640 Score = 332 bits (851), Expect = 5e-89, Method: Composition-based stats. Identities = 127/310 (40%), Positives = 195/310 (62%), Gaps = 2/310 (0%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62 ++ + + +L KG T L G + + +++DD + +ELE+ L+ +D+GV Sbjct: 328 TEQEKPKKEGFFARLKKGLLKTRQNLGSGFLGLFTGKKIDDDLFDELEEQLLIADVGVDT 387 Query: 63 AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 +KI++ L K++ LY + E + +L + KP + +P+VIL+VGVNG Sbjct: 388 TRKIIDNLTAHASRKELKDAEALYSKLREEMSDILAGVDKPLVIE-DKKPYVILMVGVNG 446 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W +R V G+D A++ Sbjct: 447 VGKTTTIGKLARQYQSEGKTVMLAAGDTFRAAAVEQLQVWGERNRIPVVAQHTGADPASV 506 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+AK VDVLI DTAGRL N + LM + K++RV+K+LD APH ++ LDA+T Sbjct: 507 IFDAIQSAKAKGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEEAPHEIMLTLDAST 566 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q ++F+ G TG+ +TK+DGTA+GG + I IP+ ++G+GEGI DL PF Sbjct: 567 GQNAVSQAKLFNDAVGLTGITLTKLDGTAKGGVIFSIADQFGIPIRYIGIGEGIEDLRPF 626 Query: 302 VAKDFSAVIT 311 A DF + Sbjct: 627 KADDFIEALF 636 >gi|161619852|ref|YP_001593739.1| signal recognition particle-docking protein FtsY [Brucella canis ATCC 23365] gi|260567579|ref|ZP_05838049.1| cell division protein FtsY [Brucella suis bv. 4 str. 40] gi|161336663|gb|ABX62968.1| signal recognition particle-docking protein FtsY [Brucella canis ATCC 23365] gi|260157097|gb|EEW92177.1| cell division protein FtsY [Brucella suis bv. 4 str. 40] Length = 465 Score = 331 bits (850), Expect = 7e-89, Method: Composition-based stats. Identities = 172/303 (56%), Positives = 226/303 (74%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 LSW +L +G A +S L + I+ I + R+LDD ++LED+LI++D+G+ A ++ + Sbjct: 161 KLSWFERLRRGLARSSSSLSDSISGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDA 220 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L + RY KDVS + V +S I K+L P++KP D SH+PHVILVVGVNG GKTT IG Sbjct: 221 LASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIG 280 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT + V S++G+DAA LAY+A+++A Sbjct: 281 KLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSSVVSSKLGADAAGLAYDAWEKA 340 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DVLIIDTAGRL N + LM + K++RVL + DP APH+VLQ LDATTGQNAL QV Sbjct: 341 KEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQV 400 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E+F VAG GL+MTK+DGTARGG L+ I HK+P+YF+GVGEGI+DLEPF AKDF+ Sbjct: 401 EIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARA 460 Query: 310 ITG 312 I G Sbjct: 461 IAG 463 >gi|218198435|gb|EEC80862.1| hypothetical protein OsI_23481 [Oryza sativa Indica Group] Length = 473 Score = 331 bits (849), Expect = 9e-89, Method: Composition-based stats. Identities = 126/315 (40%), Positives = 194/315 (61%), Gaps = 2/315 (0%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + ++ + +L + T L G + +++DD + +ELE+ L+ +D+GV Sbjct: 160 AQEQERPTKEGFFARLKRSLLKTKQNLGSGFMGLFRGKKIDDDLFDELEEQLLIADVGVD 219 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 +KI+ L K + LY + E + ++L + +P + + P+VIL+VGVN Sbjct: 220 TTRKIITSLTQHASRKQLKDAEALYGKLKEEMSEILAKVDQPLDVS-GNTPYVILMVGVN 278 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W +R V G+D+A+ Sbjct: 279 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNRIPVVAQHTGADSAS 338 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++A + A+A+ +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ LDA+ Sbjct: 339 VIFDAVQAAKARGIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDDQAPHEVMLTLDAS 398 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNA+ Q ++F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL P Sbjct: 399 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRP 458 Query: 301 FVAKDFSAVITGCLD 315 F A DF + D Sbjct: 459 FKADDFIEALFARED 473 >gi|145300820|ref|YP_001143661.1| cell division protein FtsY [Aeromonas salmonicida subsp. salmonicida A449] gi|142853592|gb|ABO91913.1| cell division protein FtsY [Aeromonas salmonicida subsp. salmonicida A449] Length = 631 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 126/308 (40%), Positives = 194/308 (62%), Gaps = 1/308 (0%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 + + + +L + T + G + S +++DD + EELE L+ +D+GV + Sbjct: 320 QDKPQREGFFARLKRSLVRTKENIGSGFFGLFSGKKIDDDLFEELETQLLTADLGVDTTR 379 Query: 65 KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 +I++ L+ K + LY + + + ML + +P D S +P+VIL+VGVNGVG Sbjct: 380 RIIDGLVQHADRKQLKDAEALYGLLKQDMGAMLAQVEQPLVIDTSKKPYVILMVGVNGVG 439 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+K+ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ Y Sbjct: 440 KTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIY 499 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A + A+++ DVLI DTAGRL N S LM + K++RV+K+LD APH ++ LDA TGQ Sbjct: 500 DAIEAARSRGADVLIADTAGRLQNKSNLMEELKKVVRVMKKLDEEAPHEIMLTLDAGTGQ 559 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NAL Q ++F G G+++TK+DGTA+GG + + +IP+ ++GVGEGI+DL PFVA Sbjct: 560 NALSQAKLFSEAVGLDGIVLTKLDGTAKGGVIFAVADKFQIPIRYIGVGEGIDDLRPFVA 619 Query: 304 KDFSAVIT 311 DF + Sbjct: 620 NDFIEALF 627 >gi|163852142|ref|YP_001640185.1| signal recognition particle-docking protein FtsY [Methylobacterium extorquens PA1] gi|163663747|gb|ABY31114.1| signal recognition particle-docking protein FtsY [Methylobacterium extorquens PA1] Length = 488 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 156/307 (50%), Positives = 206/307 (67%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 SE W +LT G TS L + +T + + R+LD E+LED LI++D GV A ++ Sbjct: 179 GSEKQGWWSRLTAGMRRTSSALSDRVTGLFTKRKLDATTLEDLEDALIQADFGVETAARM 238 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 E + RY K +S V ++ I + L P++ P D + +P+VIL VGVNG GKTT Sbjct: 239 SEAVGKGRYEKGISPDEVRAILATEIERALEPVALPIEIDSAKKPYVILTVGVNGAGKTT 298 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKLS K G VMLAAGDTFR+AAI+QL++W DRT + GSDAA LA++AF Sbjct: 299 TIGKLSLKFKAEGRSVMLAAGDTFRAAAIEQLRVWGDRTGTPVISRAQGSDAAGLAFDAF 358 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 K+A+ DVL+IDTAGRL N + LMA + K++RV+++LDP APHS L VLDAT GQNAL Sbjct: 359 KEARENGTDVLLIDTAGRLQNKAGLMAELEKIVRVIRKLDPEAPHSTLLVLDATVGQNAL 418 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QVE+F A +GL+MTK+DGTARGG L+ + +PV+F+GVGEG+ DLEPF A+DF Sbjct: 419 SQVELFSQAAPVSGLVMTKLDGTARGGILVALATKFGLPVHFIGVGEGVEDLEPFAARDF 478 Query: 307 SAVITGC 313 + ITG Sbjct: 479 ARAITGL 485 >gi|218530901|ref|YP_002421717.1| signal recognition particle-docking protein FtsY [Methylobacterium chloromethanicum CM4] gi|218523204|gb|ACK83789.1| signal recognition particle-docking protein FtsY [Methylobacterium chloromethanicum CM4] Length = 488 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 155/307 (50%), Positives = 206/307 (67%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 SE W +LT G TS L + +T + + R+LD E+LED LI++D GV A ++ Sbjct: 179 GSEKQGWWSRLTAGMRRTSSALSDRVTGLFTKRKLDATTLEDLEDALIQADFGVETATRM 238 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 E + RY K +S V ++ I + L P++ P D + +P+VIL VGVNG GKTT Sbjct: 239 SEAVGKGRYEKGISPDEVRAILATEIERALEPVALPIEIDSAKKPYVILTVGVNGAGKTT 298 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKLS K G VMLAAGDTFR+AAI+QL++W DRT + GSDAA LA++AF Sbjct: 299 TIGKLSLKFKAEGRSVMLAAGDTFRAAAIEQLRVWGDRTGTPVISRAQGSDAAGLAFDAF 358 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 K+A+ DVL+IDTAGRL N + LMA + K++RV+++LDP APH+ L VLDAT GQNAL Sbjct: 359 KEARENGTDVLLIDTAGRLQNKAGLMAELEKIVRVIRKLDPEAPHATLLVLDATVGQNAL 418 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QVE+F A +GL+MTK+DGTARGG L+ + +PV+F+GVGEG+ DLEPF A+DF Sbjct: 419 SQVELFSQAAPVSGLVMTKLDGTARGGILVALATKFGLPVHFIGVGEGVEDLEPFAARDF 478 Query: 307 SAVITGC 313 + ITG Sbjct: 479 ARAITGL 485 >gi|240139474|ref|YP_002963949.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein [Methylobacterium extorquens AM1] gi|240009446|gb|ACS40672.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein [Methylobacterium extorquens AM1] Length = 488 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 155/307 (50%), Positives = 206/307 (67%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 SE W +LT G TS L + +T + + R+LD E+LED LI++D GV A ++ Sbjct: 179 GSEKQGWWSRLTAGMRRTSSALSDRVTGLFTKRKLDATTLEDLEDALIQADFGVETATRM 238 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 E + RY K +S V ++ I + L P++ P D + +P+VIL VGVNG GKTT Sbjct: 239 SEAVGKGRYEKGISPDEVRAILATEIERALEPVALPIEIDSAKKPYVILTVGVNGAGKTT 298 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKLS K G VMLAAGDTFR+AAI+QL++W DRT + GSDAA LA++AF Sbjct: 299 TIGKLSLKFKAEGRSVMLAAGDTFRAAAIEQLRVWGDRTGTPVISRAQGSDAAGLAFDAF 358 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 K+A+ DVL+IDTAGRL N + LMA + K++RV+++LDP APH+ L VLDAT GQNAL Sbjct: 359 KEARENGTDVLLIDTAGRLQNKAGLMAELEKIVRVIRKLDPEAPHATLLVLDATVGQNAL 418 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QVE+F A +GL+MTK+DGTARGG L+ + +PV+F+GVGEG+ DLEPF A+DF Sbjct: 419 SQVELFSQAAPVSGLVMTKLDGTARGGILVALATKFGLPVHFIGVGEGVEDLEPFAARDF 478 Query: 307 SAVITGC 313 + ITG Sbjct: 479 ARAITGL 485 >gi|313501087|gb|ADR62453.1| Signal recognition particle-docking protein FtsY [Pseudomonas putida BIRD-1] Length = 372 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 131/311 (42%), Positives = 193/311 (62%), Gaps = 2/311 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQK 65 + +L +G + TS + EG+ + ++ +DD + +E+E L+ +D+GV Sbjct: 62 EQAKPGFFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSA 121 Query: 66 IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 IV+ L K K ++ LY + E + +L P+ +P N ++P+VILVVGVNG GK Sbjct: 122 IVQNLTQKVARKQLADADALYKSLQEELAALLRPVEQPLNVQAQNKPYVILVVGVNGAGK 181 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++ Sbjct: 182 TTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFD 241 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + A+A+ VDVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQN Sbjct: 242 AVQAAKARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDAEAPHEVLLVLDAGTGQN 301 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ Q + F+ TGL +TK+DGTA+GG + + IP+ F+GVGEGI+DL F A+ Sbjct: 302 AISQAKYFNQSVELTGLALTKLDGTAKGGVIFALAKQFNIPIRFIGVGEGIDDLRTFEAE 361 Query: 305 DFSAVITGCLD 315 F + D Sbjct: 362 PFVKALFAERD 372 >gi|300024820|ref|YP_003757431.1| signal recognition particle-docking protein FtsY [Hyphomicrobium denitrificans ATCC 51888] gi|299526641|gb|ADJ25110.1| signal recognition particle-docking protein FtsY [Hyphomicrobium denitrificans ATCC 51888] Length = 390 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 156/301 (51%), Positives = 210/301 (69%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 W +KL G TS KL GITD+ S R+LD ++LEDLLI++D+G+A +I + + Sbjct: 89 GWFQKLKSGLGKTSAKLTSGITDLFSKRKLDAATLDDLEDLLIQADLGIATTGRITDAIG 148 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 R+ K +S V +S + ++L P++KP D + +PHVI++VGVNG GKTT IGKL Sbjct: 149 KGRFEKGISADEVRAILSSEVERVLKPVAKPLEVDAARKPHVIMMVGVNGTGKTTTIGKL 208 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 ++K+ G V+LAAGDTFR+AAIDQLK+W +RT V ++G DA+ LA++A KQAQ Sbjct: 209 AQKLKAEGKSVVLAAGDTFRAAAIDQLKVWGERTGCPVVARQVGEDASGLAFDALKQAQG 268 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 DVL++DTAGRL N LM + K+IRVLK+LD APH V+ VLDATTGQNAL+QVE+ Sbjct: 269 TGADVLLLDTAGRLQNKQALMEELEKVIRVLKKLDSTAPHDVILVLDATTGQNALQQVEV 328 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F AG TGL+MTK+DGTARGG L+ I +PV+ +GVGEG +DL+PF A +F+ I Sbjct: 329 FRDRAGVTGLVMTKLDGTARGGILVAIADKFGLPVHAIGVGEGADDLQPFEAAEFARAIA 388 Query: 312 G 312 G Sbjct: 389 G 389 >gi|254561888|ref|YP_003068983.1| fused Signal Recognition Particle [Methylobacterium extorquens DM4] gi|254269166|emb|CAX25132.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein [Methylobacterium extorquens DM4] Length = 488 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 155/307 (50%), Positives = 206/307 (67%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 SE W +LT G TS L + +T + + R+LD E+LED LI++D GV A ++ Sbjct: 179 GSEKQGWWSRLTAGMRRTSSALSDRVTGLFTKRKLDATTLEDLEDALIQADFGVETATRM 238 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 E + RY K +S V ++ I + L P++ P D + +P+VIL VGVNG GKTT Sbjct: 239 SEAVGKGRYEKGISPDEVRAILATEIERALEPVALPIEIDSAKKPYVILTVGVNGAGKTT 298 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKLS K G VMLAAGDTFR+AAI+QL++W DRT + GSDAA LA++AF Sbjct: 299 TIGKLSLKFKAEGRSVMLAAGDTFRAAAIEQLRVWGDRTGTPVISRAQGSDAAGLAFDAF 358 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 K+A+ DVL+IDTAGRL N + LMA + K++RV+++LDP APH+ L VLDAT GQNAL Sbjct: 359 KEARENGTDVLLIDTAGRLQNKAGLMAELEKIVRVIRKLDPEAPHATLLVLDATVGQNAL 418 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QVE+F A +GL+MTK+DGTARGG L+ + +PV+F+GVGEG+ DLEPF A+DF Sbjct: 419 SQVELFSQAAPVSGLVMTKLDGTARGGILVALATKFGLPVHFIGVGEGVEDLEPFAARDF 478 Query: 307 SAVITGC 313 + ITG Sbjct: 479 ARAITGL 485 >gi|85710834|ref|ZP_01041895.1| Signal recognition particle GTPase [Idiomarina baltica OS145] gi|85695238|gb|EAQ33175.1| Signal recognition particle GTPase [Idiomarina baltica OS145] Length = 426 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 133/311 (42%), Positives = 200/311 (64%), Gaps = 1/311 (0%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + + ++ +LT+G TS + G+ + +++DD + EELE L+ +D+GV Sbjct: 109 TPEAAPAKKKGLWARLTEGLKRTSGSIGSGLFGVFKGKKIDDDLFEELETQLLMADLGVK 168 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 KI++ L + K + LY++ E + +L P+ KP D S P+VILV GVN Sbjct: 169 TTTKIIDNLTQQADRKQLKDAEALYELLQEQMEALLEPVDKPLAIDTSKTPYVILVTGVN 228 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT IGKL+K+ G VMLAAGDTFR+AA++QL+IW +R + + GSD+A+ Sbjct: 229 GVGKTTTIGKLAKQFKREGKSVMLAAGDTFRAAAVEQLQIWGERNEIPVIAQQTGSDSAS 288 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++A + A+A+ +DVLI DTAGRL N S LM + K++RV+K+ DP APH V+ LDA Sbjct: 289 VLFDAMQAAKARGIDVLIADTAGRLQNKSNLMEELKKIVRVMKKQDPEAPHEVMLTLDAG 348 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNA+ Q ++F G +G++MTK+DGTA+GG + + KIP+ ++GVGE ++DL P Sbjct: 349 TGQNAISQAKLFTEAVGVSGIVMTKLDGTAKGGVIFAVADEFKIPIRYIGVGEQLDDLRP 408 Query: 301 FVAKDFSAVIT 311 FVA+DF + Sbjct: 409 FVARDFIQALF 419 >gi|121602701|ref|YP_988356.1| signal recognition particle-docking protein FtsY [Bartonella bacilliformis KC583] gi|120614878|gb|ABM45479.1| signal recognition particle-docking protein FtsY [Bartonella bacilliformis KC583] Length = 387 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 158/312 (50%), Positives = 222/312 (71%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 + V + ++W +L G + +S +L I + + R+L+ +ELED+LI++D+GV Sbjct: 73 LPTPPVEQKEVAWFERLKHGLSRSSQQLGGSIGALFTKRKLNADTLQELEDILIQADLGV 132 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 A I + L + RY K++S+ + V++ I K+L P++ P D S++PHVIL VGVN Sbjct: 133 ETASHITDILSSGRYGKNLSLDDIHTIVADEIKKVLEPVAIPLELDLSYKPHVILFVGVN 192 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+ K++ GLKVMLAAGDTFR+AAI+QL IW +RT A V ++ G+DAA+ Sbjct: 193 GTGKTTTIGKLAAKLTSNGLKVMLAAGDTFRAAAIEQLHIWGERTGAPVVSTQSGADAAS 252 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LA+EA+++A+ DVLIIDTAGRL N + LM + K+IRVL++ DP APH++LQ LDAT Sbjct: 253 LAFEAYEKAKKANNDVLIIDTAGRLQNKTELMDELAKIIRVLRKHDPQAPHTILQTLDAT 312 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNAL QV++F +AG GL+MTK+DGTARGG L+ + +K+PVYF+G+GE DLEP Sbjct: 313 TGQNALNQVDIFRNIAGVNGLVMTKLDGTARGGILVALAAKYKLPVYFIGIGENTEDLEP 372 Query: 301 FVAKDFSAVITG 312 F A DF+ ITG Sbjct: 373 FSASDFAQAITG 384 >gi|227329287|ref|ZP_03833311.1| cell division protein FtsY [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 488 Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats. Identities = 124/316 (39%), Positives = 194/316 (61%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 ++ ++ + +L + T L G + +++DD + +ELE+ L+ +D+GV Sbjct: 174 VAQEQERPTKEGFFARLKRSLVKTRQNLGSGFIGLFRGKKIDDDLFDELEEQLLVADVGV 233 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +KI+ L + + L+ + E + ++L + P N + P+VIL+VGV Sbjct: 234 ETTRKIIGSLTEHASRRQLKDADTLFVKLKEEMAEILAKVDAPLNIE-GKTPYVILMVGV 292 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGK++++ G VMLAAGDTFR+AA++QL++W R + V G+D+A Sbjct: 293 NGVGKTTTIGKMARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVAVVAQHTGADSA 352 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+A+ VDVLI DTAGRL N + LM + K++RV+K+LD APH V+ LDA Sbjct: 353 SVIFDAIQAAKARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTLDA 412 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL Sbjct: 413 STGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFAIPIRYIGVGEGIEDLR 472 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + D Sbjct: 473 PFKADDFIEALFARED 488 >gi|308188478|ref|YP_003932609.1| Cell division protein ftsY [Pantoea vagans C9-1] gi|308058988|gb|ADO11160.1| Cell division protein ftsY [Pantoea vagans C9-1] Length = 564 Score = 328 bits (842), Expect = 6e-88, Method: Composition-based stats. Identities = 122/313 (38%), Positives = 188/313 (60%), Gaps = 2/313 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++ + +L + T L G + +++DD + +ELE+ L+ +D+GV Sbjct: 253 EQERPSKEGFFSRLKRSLVKTRQNLGSGFISLFRGKKIDDDLFDELEEQLLIADVGVDTT 312 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 ++I+ L + K + LY + + +L + P + P VIL+VGVNGV Sbjct: 313 RRIITNLTQQANRKQLRDAEALYGLLKAEMASILAKVDAPLDVS-GKTPFVILMVGVNGV 371 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ Sbjct: 372 GKTTTIGKLARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 431 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+++ VDVLI DTAGRL N S LM + K+ RV+K+LD APH V+ LDA+TG Sbjct: 432 FDAIQAAKSRGVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDDSAPHEVMLTLDASTG 491 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q +F+ G TG+ +TK+DGTA+GG + + IP+ ++GVGEGI DL PF Sbjct: 492 QNAVSQARLFNEAVGLTGIALTKLDGTAKGGVIFSVADQFGIPIRYIGVGEGIEDLRPFK 551 Query: 303 AKDFSAVITGCLD 315 A+DF + D Sbjct: 552 AEDFIEALFARED 564 >gi|260469862|ref|ZP_05814009.1| signal recognition particle-docking protein FtsY [Mesorhizobium opportunistum WSM2075] gi|259028368|gb|EEW29697.1| signal recognition particle-docking protein FtsY [Mesorhizobium opportunistum WSM2075] Length = 326 Score = 328 bits (842), Expect = 7e-88, Method: Composition-based stats. Identities = 164/311 (52%), Positives = 225/311 (72%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + + SW +++ G A +S +L I + + R+LD+ ++LED+LIR+D+G+ Sbjct: 14 AKAPEPAPRRSWFQRMRDGLARSSRELTGNIAGVFTKRKLDEDTLQDLEDVLIRADLGME 73 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 A ++ + L + RY KDVS V ++ + K+L ++ P D SH+PHVILVVGVNG Sbjct: 74 TALRVTDALASSRYGKDVSDTEVRAIMAAEVEKVLTHVAMPLELDLSHKPHVILVVGVNG 133 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+ K++D GL VMLAAGDTFR+AAI+QLKIW +RT++ + S++G+DAA L Sbjct: 134 TGKTTTIGKLAAKLTDGGLSVMLAAGDTFRAAAIEQLKIWGERTNSPVIASKLGADAAGL 193 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 AY+AF++A+ DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ +DATT Sbjct: 194 AYDAFERAKEAGSDVLIIDTAGRLQNKTELMAELEKIVRVLGKLDPEAPHTVLQTVDATT 253 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL QVE+F VAG GL+MTK+DGTARGG L+ I HK+PVYF+GVGE ++DLEPF Sbjct: 254 GQNALNQVEIFRNVAGVNGLVMTKLDGTARGGILVAIAAKHKLPVYFIGVGEQVDDLEPF 313 Query: 302 VAKDFSAVITG 312 A +F+ I G Sbjct: 314 SASEFARAIAG 324 >gi|304397880|ref|ZP_07379756.1| signal recognition particle-docking protein FtsY [Pantoea sp. aB] gi|304354591|gb|EFM18962.1| signal recognition particle-docking protein FtsY [Pantoea sp. aB] Length = 566 Score = 328 bits (841), Expect = 7e-88, Method: Composition-based stats. Identities = 122/313 (38%), Positives = 187/313 (59%), Gaps = 2/313 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++ + +L + T L G + +++DD + +ELE+ L+ +D+GV Sbjct: 255 EQERPSKEGFFARLKRSLVKTRQNLGSGFISLFRGKKIDDDLFDELEEQLLIADVGVDTT 314 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 ++I+ L + K + LY + + +L + P P VIL+VGVNGV Sbjct: 315 RRIITHLTQQANRKQLRDAEALYGLLKAEMASILANVDAPLEVS-GKTPFVILMVGVNGV 373 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ Sbjct: 374 GKTTTIGKLARQYQAEGKTVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 433 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+++ VDVLI DTAGRL N S LM + K+ RV+K+LD APH V+ LDA+TG Sbjct: 434 FDAIQAAKSRGVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDDSAPHEVMLTLDASTG 493 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q +F+ G TG+ +TK+DGTA+GG + + IP+ ++GVGEGI DL PF Sbjct: 494 QNAVSQARLFNEAVGVTGIALTKLDGTAKGGVIFSVADQFGIPIRYIGVGEGIEDLRPFK 553 Query: 303 AKDFSAVITGCLD 315 A+DF + D Sbjct: 554 AEDFIEALFARED 566 >gi|319404905|emb|CBI78506.1| cell division protein [Bartonella rochalimae ATCC BAA-1498] Length = 413 Score = 328 bits (841), Expect = 8e-88, Method: Composition-based stats. Identities = 153/312 (49%), Positives = 221/312 (70%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 +S V + +W +L KG + +S +L + I + ++LD+ +ELED+LI++D+G+ Sbjct: 99 LSALTVEQKKAAWFERLKKGLSRSSQQLSDSIGTLFVKKKLDENTLQELEDILIQADLGI 158 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 +I++ L T+ Y K++S + + V+ I K+L P++ P D +H+PHVIL+VGVN Sbjct: 159 ETTTRIIDILSTRYYEKNLSPKDIYTIVTNEIKKVLEPIAFPLEIDLNHKPHVILLVGVN 218 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+ K++ GLKVML AGDTFR+AA++QL IW +R A +++G+DAA+ Sbjct: 219 GTGKTTTIGKLAAKLTMGGLKVMLVAGDTFRAAAVEQLHIWGERAKAPVFSTKLGADAAS 278 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LA++A+++A+ + DVL+IDTAGRL N LM + K+IRVL + +P APH+VLQ LDA+ Sbjct: 279 LAFDAYEKAKKENYDVLLIDTAGRLQNKIELMDELAKIIRVLGKHNPQAPHTVLQTLDAS 338 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNAL QV +F +AG GL+MTK+DGTARGG L+ I HKIPV+F+GVGE + DLEP Sbjct: 339 TGQNALNQVNVFRDIAGVNGLVMTKLDGTARGGILVAIASKHKIPVHFIGVGENVEDLEP 398 Query: 301 FVAKDFSAVITG 312 F A DF+ I G Sbjct: 399 FSASDFAEAIIG 410 >gi|170751708|ref|YP_001757968.1| signal recognition particle-docking protein FtsY [Methylobacterium radiotolerans JCM 2831] gi|170658230|gb|ACB27285.1| signal recognition particle-docking protein FtsY [Methylobacterium radiotolerans JCM 2831] Length = 466 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 151/309 (48%), Positives = 203/309 (65%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 + E+ W +LT G TS L + +T + + R+LD E+LED LI++D G+ A Sbjct: 155 EREPEAKGWWSRLTSGMKRTSSALSDRVTGLFTKRKLDATTLEDLEDALIQADFGLETAM 214 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 ++ E + RY K +S V ++ + + L P++ P D + +P VIL VGVNG GK Sbjct: 215 RVSEAVGKGRYEKGISPDEVRAILAAEVERALEPVAVPLTIDAARKPFVILTVGVNGAGK 274 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT +GKL+ K+ G VMLAAGDTFR+AAIDQLK+W RT V G+DAA LA++ Sbjct: 275 TTTLGKLASKLRAEGRTVMLAAGDTFRAAAIDQLKVWGARTGTPVVSGAQGADAAGLAFD 334 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A KQA A DVL+IDTAGRL N + LMA + K++RVL++ DP APH+ L VLDAT GQN Sbjct: 335 ALKQAGAAGTDVLLIDTAGRLQNKAGLMAELEKIVRVLRKQDPDAPHATLLVLDATVGQN 394 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 AL QVE+F A +GL+MTK+DGTARGG L+ + +PV+F+GVGEG+ DLEPF A+ Sbjct: 395 ALSQVELFSQAAPVSGLVMTKLDGTARGGILVALAAKFGLPVHFIGVGEGVEDLEPFAAR 454 Query: 305 DFSAVITGC 313 DF+ I G Sbjct: 455 DFARAIAGL 463 >gi|256823779|ref|YP_003147742.1| signal recognition particle-docking protein FtsY [Kangiella koreensis DSM 16069] gi|256797318|gb|ACV27974.1| signal recognition particle-docking protein FtsY [Kangiella koreensis DSM 16069] Length = 427 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 130/311 (41%), Positives = 205/311 (65%), Gaps = 4/311 (1%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +E + +L G + T +L + + ++ + S+ +DD + E++E L+ +D+GV+ +K Sbjct: 115 PAEKQGFFSRLKAGLSRTRGQLADSLANLVLGSKEIDDDLLEDIETQLLMADVGVSATRK 174 Query: 66 IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 I+++L K K++ + L D + +L+ +++ P ++P + +H+P VIL+VGVNGVGK Sbjct: 175 IIDDLTDKAARKELKDPQALMDRLRQLLSEIIEPCTQPL--ELTHKPFVILMVGVNGVGK 232 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+KK G VMLAAGDTFR+AA++QL++W +R + G+D+A++ ++ Sbjct: 233 TTTIGKLAKKFQGEGKSVMLAAGDTFRAAAVEQLQVWGERNNIHVTAQHTGADSASVIFD 292 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + AQA+K+DVLI DTAGRLH S LM + K+ RV+++LDP APH V+ V+DA TGQN Sbjct: 293 ALQAAQARKIDVLIADTAGRLHTKSNLMDELSKVQRVMQKLDPSAPHEVMLVVDAGTGQN 352 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 AL Q E F+ +G+ +TK+DGTA+GG + + K P+ F+GVGEGI+DL F + Sbjct: 353 ALNQAEHFNKAVPLSGITITKLDGTAKGGIIFALADKMKTPIRFIGVGEGIDDLREFNGQ 412 Query: 305 DFSAVITGCLD 315 DF + D Sbjct: 413 DFIQALFATDD 423 >gi|217979345|ref|YP_002363492.1| signal recognition particle-docking protein FtsY [Methylocella silvestris BL2] gi|217504721|gb|ACK52130.1| signal recognition particle-docking protein FtsY [Methylocella silvestris BL2] Length = 483 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 146/307 (47%), Positives = 209/307 (68%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 S W +L +G A +S + G+ I + R+LD + +ELE++LIR+D+GVA A I Sbjct: 169 ESAPKGWWTRLRQGLARSSDSIGSGLKAIFTKRKLDAAMLDELEEVLIRADLGVATATHI 228 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 + RY K + V V ++E + ++L P ++P D + +P VILVVGVNG GKTT Sbjct: 229 AGLVGKGRYDKSIEVDEVKTILAEEVERVLAPYARPLEIDPAIKPFVILVVGVNGSGKTT 288 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+ + S G KV+LAAGDTFR+AAI+QL++W DR + + GSDA+ALA++A Sbjct: 289 TIGKLAAQFSQEGRKVLLAAGDTFRAAAIEQLRLWGDRLNCAVIAGNQGSDASALAFDAI 348 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+ D+LI+DTAGRL N + LMA + K++RV+K+++P APH+VL VLDAT GQNA+ Sbjct: 349 RAARESGADILIMDTAGRLQNRAELMAELEKIVRVMKKVEPAAPHAVLLVLDATVGQNAV 408 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q E+F VAG TGL+MTK+DGTARGG L+ + ++P++++GVGE DL PF A+DF Sbjct: 409 SQTEIFSKVAGVTGLVMTKLDGTARGGILVALAEKFQLPIHYVGVGETAADLAPFAARDF 468 Query: 307 SAVITGC 313 + I G Sbjct: 469 ARAIAGL 475 >gi|117620356|ref|YP_854900.1| cell division protein FtsY [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561763|gb|ABK38711.1| cell division protein FtsY [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 633 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 127/308 (41%), Positives = 193/308 (62%), Gaps = 1/308 (0%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 + + + +L + T + G + +++DD + EELE L+ +D+GV Sbjct: 322 QEKPQREGFFARLKRSLVRTRENIGSGFFGLFRGKKIDDELFEELETQLLTADLGVDTTS 381 Query: 65 KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 +I+E L+ K + LY + + + +ML + +P D S +P+VIL+VGVNGVG Sbjct: 382 RIIEGLVQHADRKQLKDAEALYGLLKQDMGEMLAKVEQPLVIDTSKKPYVILMVGVNGVG 441 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+K+ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ Y Sbjct: 442 KTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIY 501 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A + A+++ DVLI DTAGRL N S LM + K++RV+K+LD APH ++ LDA TGQ Sbjct: 502 DAIEAARSRGADVLIADTAGRLQNKSNLMEELKKVVRVMKKLDDAAPHEIMLTLDAGTGQ 561 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NAL Q ++F G TG+ +TK+DGTA+GG + + +IP+ ++GVGEGI+DL PFVA Sbjct: 562 NALSQAKLFSEAVGLTGITLTKLDGTAKGGVIFAVADKFQIPIRYIGVGEGIDDLRPFVA 621 Query: 304 KDFSAVIT 311 DF + Sbjct: 622 NDFIEALF 629 >gi|242241271|ref|YP_002989452.1| signal recognition particle-docking protein FtsY [Dickeya dadantii Ech703] gi|242133328|gb|ACS87630.1| signal recognition particle-docking protein FtsY [Dickeya dadantii Ech703] Length = 432 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 126/313 (40%), Positives = 187/313 (59%), Gaps = 2/313 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++ + +L + T L G + +++DD + +ELE+ L+ +D+GV Sbjct: 121 EQERPTKEGFFARLKRSLVKTRQNLGSGFVGLFRGKKIDDDLFDELEEQLLIADVGVETT 180 Query: 64 QKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 +KI+E L K + L + + +L +P + P VIL+VGVNGV Sbjct: 181 RKIIERLTEHADRKQLKDADALLSLLKTEMSGILAKADEPLVIE-GKTPFVILMVGVNGV 239 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+++ G VMLAAGDTFR+AA++QL++W R + V G+D+A++ Sbjct: 240 GKTTTIGKLARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNVPVVAQHTGADSASVI 299 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+A+ VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ LDA+TG Sbjct: 300 FDAIQAAKARGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDDDAPHEVMLTLDASTG 359 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q +F G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI+DL PF Sbjct: 360 QNAVSQARLFDEAVGLTGIALTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIDDLRPFK 419 Query: 303 AKDFSAVITGCLD 315 A DF + D Sbjct: 420 ADDFIEALFARED 432 >gi|56459337|ref|YP_154618.1| Signal recognition particle GTPase [Idiomarina loihiensis L2TR] gi|56178347|gb|AAV81069.1| Signal recognition particle GTPase [Idiomarina loihiensis L2TR] Length = 449 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 134/308 (43%), Positives = 198/308 (64%), Gaps = 1/308 (0%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 K E + +LT+G TS + G+ + +++DD + EELE L+ +D+GVA Sbjct: 129 KEKGEKKGFWARLTQGLRRTSGSIGSGLIGVFRGKKIDDDLFEELETQLLMADLGVATTT 188 Query: 65 KIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 KI++ L + K + LY++ E + ++L P+ K S P+VIL+ GVNGVG Sbjct: 189 KIIDNLTKQADRKQLKDAEALYELLQEQLAEILKPVDKRLEIPESDSPYVILMTGVNGVG 248 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+K+ G VMLAAGDTFR+AA++QL++W +R + G+D+A++ Y Sbjct: 249 KTTTIGKLAKQFKAEGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGADSASVLY 308 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A + A+A+ VDVLI DTAGRL N + LM + K++RV+K+LDP APH V+ LDA TGQ Sbjct: 309 DALQAAKARDVDVLIADTAGRLQNKANLMEELKKLVRVMKKLDPEAPHEVMLTLDAGTGQ 368 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NA+ Q ++F G +G++MTK+DGTA+GG + + IP+ ++GVGE + DL PFVA Sbjct: 369 NAISQAKLFTEAVGVSGIVMTKLDGTAKGGVIFAVADQFAIPIRYIGVGESLEDLRPFVA 428 Query: 304 KDFSAVIT 311 KDF A + Sbjct: 429 KDFIAALF 436 >gi|319407865|emb|CBI81518.1| cell division protein [Bartonella sp. 1-1C] Length = 413 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 153/312 (49%), Positives = 223/312 (71%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 +S + + +W +L KG + +S +L + I + ++LD+ +ELED+LI++D+G+ Sbjct: 99 LSTLTIEQKKAAWFERLKKGLSRSSQQLSDSIGTLFVKQKLDENTLQELEDVLIQADLGI 158 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 +I++ L T+ Y K++S + + V++ I K+L P++ P D +H+PHVIL+VGVN Sbjct: 159 ETTTRIIDILSTRYYEKNLSPKDIYAIVTDEIKKVLEPIAFPLEIDLNHKPHVILLVGVN 218 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+ K++ GLKVML AGDTFR+AA++QL IW +RT A +++G+DAA+ Sbjct: 219 GTGKTTTIGKLAAKLTMGGLKVMLVAGDTFRAAAVEQLHIWGERTKAPVFSTKLGADAAS 278 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LA++A+++A+ + DVL+IDTAGRL N LM + K+IRVL + +P APH+VLQ LDA+ Sbjct: 279 LAFDAYEKAKKEGYDVLLIDTAGRLQNKIELMDELAKIIRVLGKHNPQAPHTVLQTLDAS 338 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNAL QV +F +AG GL+MTK+DGTARGG L+ I HKIPV+F+GVGE + DLEP Sbjct: 339 TGQNALNQVNVFRDIAGVNGLVMTKLDGTARGGILVAIASKHKIPVHFIGVGENVEDLEP 398 Query: 301 FVAKDFSAVITG 312 F A DF+ I G Sbjct: 399 FSASDFAEAIIG 410 >gi|332995325|gb|AEF05380.1| signal recognition particle GTPase [Alteromonas sp. SN2] Length = 530 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 129/320 (40%), Positives = 197/320 (61%), Gaps = 6/320 (1%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 E S +L + + T L G+ + + +DD + E+LE L+ +D+G+ Q Sbjct: 211 PAPKEKKSLFSRLKESLSRTKANLGSGLVSLFKGKAIDDELYEDLETQLLVADVGMDTTQ 270 Query: 65 KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFS-----HRPHVILVVG 118 KI+ L KD+ L D + + + ML +++P + + P VIL+VG Sbjct: 271 KIITHLTDSASRKDLKDAEALLDILKQQMAGMLSKVNEPLSDAINAHNSDEGPFVILMVG 330 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNGVGKTT IGKL+K+ G KVMLAAGDTFR+AA++QL++W +R S + G+D+ Sbjct: 331 VNGVGKTTTIGKLAKQFQQQGKKVMLAAGDTFRAAAVEQLQVWGERNSIPVIAQHTGADS 390 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 A++ Y+A + A+++K D+LI DTAGRL N LM + K++RV+K+L+P+APH V+ LD Sbjct: 391 ASVLYDALEAAKSRKTDILIADTAGRLQNKDNLMEELKKVVRVMKKLNPNAPHEVMLTLD 450 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A TGQNA+ Q ++F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI+DL Sbjct: 451 AGTGQNAISQAKLFNQAVGLTGITLTKLDGTAKGGVIFSIADKFGIPIRYIGVGEGIDDL 510 Query: 299 EPFVAKDFSAVITGCLDYGE 318 F ++F + +D GE Sbjct: 511 RQFDGQEFIDALFSEIDSGE 530 >gi|289672445|ref|ZP_06493335.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. syringae FF5] Length = 339 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 128/304 (42%), Positives = 191/304 (62%), Gaps = 2/304 (0%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVE 68 + + +L +G + TS + EG+ + ++ +DD + EE+E L+ +D+GV I++ Sbjct: 30 KVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIK 89 Query: 69 ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L K K ++ + LY + + ML P+ +P HRP VILVVGVNG GKTT Sbjct: 90 SLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKSEHRPFVILVVGVNGAGKTTT 149 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + Sbjct: 150 IGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQ 209 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Sbjct: 210 AAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAIN 269 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A+ F Sbjct: 270 QAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPFV 329 Query: 308 AVIT 311 + Sbjct: 330 QALF 333 >gi|330891336|gb|EGH23997.1| signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. mori str. 301020] Length = 354 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 128/310 (41%), Positives = 195/310 (62%), Gaps = 2/310 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62 Q+ + + + +L +G + TS + EG+ + ++ +DD + EE+E L+ +D+GV Sbjct: 39 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLPADVGVEA 98 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 I++ L K K ++ + LY + + ML P+ +P H+P VILVVGVNG Sbjct: 99 TSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNG 158 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 159 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 218 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA T Sbjct: 219 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 278 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q + F+ TGL +TK+DGTA+GG + + +P++++GVGEGI+DL F Sbjct: 279 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIHYIGVGEGIDDLRTF 338 Query: 302 VAKDFSAVIT 311 A+ F + Sbjct: 339 EAEPFVQALF 348 >gi|227113848|ref|ZP_03827504.1| cell division protein FtsY [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 503 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 124/316 (39%), Positives = 194/316 (61%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 ++ ++ + +L + T L G + +++DD + +ELE+ L+ +D+GV Sbjct: 189 VAQEQERPTKEGFFARLKRSLVKTRQNLGSGFIGLFRGKKIDDDLFDELEEQLLVADVGV 248 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +KI+ L + + L+ + E + ++L + P N + P+VIL+VGV Sbjct: 249 ETTRKIITSLTEHASRRQLKDADTLFVKLKEEMAEILAKVDAPLNIE-GKTPYVILMVGV 307 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGK++++ G VMLAAGDTFR+AA++QL++W R + V G+D+A Sbjct: 308 NGVGKTTTIGKMARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVAVVAQHTGADSA 367 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+A+ VDVLI DTAGRL N + LM + K++RV+K+LD APH V+ LDA Sbjct: 368 SVIFDAIQAAKARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTLDA 427 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL Sbjct: 428 STGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFAIPIRYIGVGEGIEDLR 487 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + D Sbjct: 488 PFKADDFIEALFARED 503 >gi|50123266|ref|YP_052433.1| cell division protein FtsY [Pectobacterium atrosepticum SCRI1043] gi|49613792|emb|CAG77243.1| cell division protein [Pectobacterium atrosepticum SCRI1043] Length = 469 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 123/313 (39%), Positives = 193/313 (61%), Gaps = 2/313 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++ + +L + T L G + +++DD + +ELE+ L+ +D+GV Sbjct: 158 EQERPTKEGFFARLKRSLVKTRENLGSGFIGLFRGKKIDDDLFDELEEQLLIADVGVETT 217 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 +KI++ L + + L+ + E + ++L + P N + P+VIL+VGVNGV Sbjct: 218 RKIIDSLTEHASRRQLKDADTLFVKLKEEMAEILAKVDVPLNIE-GKTPYVILMVGVNGV 276 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGK++++ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ Sbjct: 277 GKTTTIGKMARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVPVIAQHTGADSASVI 336 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+A+ VDVLI DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TG Sbjct: 337 FDAIQAAKARGVDVLIADTAGRLQNKAYLMEELKKIVRVMKKLDEDAPHEVMLTLDASTG 396 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF Sbjct: 397 QNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFAIPIRYIGVGEGIEDLRPFK 456 Query: 303 AKDFSAVITGCLD 315 A DF + D Sbjct: 457 ADDFIEALFARED 469 >gi|307546425|ref|YP_003898904.1| signal recognition particle receptor [Halomonas elongata DSM 2581] gi|307218449|emb|CBV43719.1| K03110 signal recognition particle receptor [Halomonas elongata DSM 2581] Length = 455 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 128/311 (41%), Positives = 188/311 (60%), Gaps = 3/311 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAV 62 +K E W ++ G T L +G+ + +++DD + EELE L+ +D+G+ Sbjct: 138 EKPRGEKKGWFARIKDGLGKTRANLTDGLAGLFLGRKQIDDDLMEELETQLLMADVGIEA 197 Query: 63 AQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVN 120 +I++ L + K++ L + E + +L +++P P VILVVGVN Sbjct: 198 TTEIIDRLTERVSRKELKDPEALFKALQEELASLLDGVTQPLELPPKGEGPFVILVVGVN 257 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT IGKL+++ G VMLAAGDTFR+AA++QLK+W +R S V G+D+A+ Sbjct: 258 GVGKTTTIGKLTQRFQREGRSVMLAAGDTFRAAAVEQLKVWGERNSVPVVAQHTGADSAS 317 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + Y+A A+A+ VDVLI DTAGRLHN S LM + K+ RV+ +LD APH V+ VLDA Sbjct: 318 VVYDALAAARARGVDVLIADTAGRLHNKSHLMEELKKVRRVMGKLDADAPHEVMLVLDAG 377 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNAL Q F+ TG+ +TK+DGTA+GG + + P+ F+GVGE ++DL P Sbjct: 378 TGQNALSQASTFNEAVPVTGITLTKLDGTAKGGIIFALAQQLGTPIRFIGVGETLDDLRP 437 Query: 301 FVAKDFSAVIT 311 F A++F + Sbjct: 438 FAAREFVDALF 448 >gi|110835427|ref|YP_694286.1| cell division protein FtsY [Alcanivorax borkumensis SK2] gi|110648538|emb|CAL18014.1| Cell division protein FtsY [Alcanivorax borkumensis SK2] Length = 397 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 130/311 (41%), Positives = 199/311 (63%), Gaps = 2/311 (0%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVA 61 + +V + ++ ++ +G + T L +G+ D++ ++ +DD + EE+E L+ +D+GV Sbjct: 82 SPEVNDDEGNFWTRMKQGMSKTRKGLGKGLADLLVGAKEIDDEIFEEIETQLLVADVGVE 141 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 IV+ L + +++ LY+ + + K+L+P+ +P D S +P+VIL+VGVN Sbjct: 142 ATDVIVQALTDQVSREELVDADALYESLQNELRKLLVPVDQPMQIDSSKKPYVILMVGVN 201 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT IGKL+ + G VMLAAGDTFR+AA++QL++W +R V G+D+A+ Sbjct: 202 GVGKTTTIGKLACRFKAEGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVVAQHTGADSAS 261 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + Y+A + AQ++ D+LI DTAGRLH LM + K+ RV+K+L P APH VL VLDA Sbjct: 262 VVYDAVQAAQSRGADILIADTAGRLHTRGNLMDELTKVTRVMKKLIPDAPHEVLLVLDAG 321 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNA+ Q E F AG TGL +TK+DGTA+GG L + +P+ F+GVGE + DL P Sbjct: 322 TGQNAINQAEQFRDAAGVTGLALTKLDGTAKGGILFALAKRTGLPIRFIGVGEQLEDLRP 381 Query: 301 FVAKDFSAVIT 311 F A++F + Sbjct: 382 FHAEEFVQALF 392 >gi|93006307|ref|YP_580744.1| signal recognition particle-docking protein FtsY [Psychrobacter cryohalolentis K5] gi|92393985|gb|ABE75260.1| signal recognition particle-docking protein FtsY [Psychrobacter cryohalolentis K5] Length = 477 Score = 326 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 138/317 (43%), Positives = 200/317 (63%), Gaps = 2/317 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIG 59 + ++ +S+ SW ++ G + + L EG+ I I + +DD + EE+ED L+ +DIG Sbjct: 159 LQEEQESSKKGSWFNRMKTGLSKSRKNLAEGMVSILIGGKEIDDELLEEVEDQLLVADIG 218 Query: 60 VAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118 V +I++ L + D+ LY + + +L P P D S +P VILVVG Sbjct: 219 VNATNRIIKSLTEQTDRGDLIYAHSLYKALQTELVDILTPKVAPLIIDSSKKPFVILVVG 278 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNGVGKTT IGKL+K++ G VMLAAGDTFR+AA +QL+IW +R V GSD+ Sbjct: 279 VNGVGKTTTIGKLAKRLQGEGKSVMLAAGDTFRAAATEQLQIWGERNHIPVVAQGHGSDS 338 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 A++ ++A + A+AK +DVLI DTAGRL N + LMA + K++RV+++ DP APH + VLD Sbjct: 339 ASVIFDAMQSAKAKNIDVLIADTAGRLQNKTHLMAELEKVVRVMRKADPSAPHEGMIVLD 398 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A TGQNA+ QVE+F+ V TG+ +TK+DGTA+GG + I T +P+ ++GVGE I+DL Sbjct: 399 AGTGQNAINQVELFNKVVPLTGITITKLDGTAKGGVVFNIAETTDVPIRYIGVGESIDDL 458 Query: 299 EPFVAKDFSAVITGCLD 315 F K F A + D Sbjct: 459 RAFSPKQFVAALFETDD 475 >gi|109900243|ref|YP_663498.1| signal recognition particle-docking protein FtsY [Pseudoalteromonas atlantica T6c] gi|109702524|gb|ABG42444.1| signal recognition particle-docking protein FtsY [Pseudoalteromonas atlantica T6c] Length = 485 Score = 326 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 123/312 (39%), Positives = 191/312 (61%), Gaps = 2/312 (0%) Query: 2 SNQKVASE-SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 ++ + KL + + T L G + + +DD + EELE L+ +D+G+ Sbjct: 161 PEEEPEKPVKMGLFAKLRQSLSRTKENLGSGFISLFRGKAIDDDLFEELETQLLVADVGI 220 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 KI+ L + LY + + + +L +S+P P VIL+VGV Sbjct: 221 DTTSKIISRLTDSAKRNQLKDGEALYQLLKQQMSNILQEVSQPLEPKSEDGPFVILMVGV 280 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGK++K+ G KVMLAAGDTFR+AA++QL++W +R + + + GSD+A Sbjct: 281 NGVGKTTTIGKMAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQKTGSDSA 340 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ Y+A + A+A+ VDVLI DTAGRL N LM + K++RV+++++P+APH V+ LDA Sbjct: 341 SVIYDALESAKARNVDVLIADTAGRLQNKDHLMEELKKVVRVMRKINPNAPHEVMLTLDA 400 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQNA+ Q ++F+ G TG+ +TK+DGTA+GG + + KIP+ ++GVGEGI+DL Sbjct: 401 ATGQNAVSQTKLFNQAVGLTGITLTKLDGTAKGGVIFALADQFKIPIRYIGVGEGIDDLR 460 Query: 300 PFVAKDFSAVIT 311 PF + +F + Sbjct: 461 PFASDEFVEALF 472 >gi|237809748|ref|YP_002894188.1| signal recognition particle-docking protein FtsY [Tolumonas auensis DSM 9187] gi|237502009|gb|ACQ94602.1| signal recognition particle-docking protein FtsY [Tolumonas auensis DSM 9187] Length = 435 Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats. Identities = 125/308 (40%), Positives = 190/308 (61%), Gaps = 1/308 (0%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 + + S +L KG T + G + ++LDD + +ELE L+ +D+GV Q Sbjct: 123 QEKPKRTSLFGRLVKGLMRTRESIGAGFMALFRGKKLDDDLFDELETQLLTADLGVETTQ 182 Query: 65 KIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 +I++ L+ + + LYD+ + + +L P+S+P D S P+VIL++GVNGVG Sbjct: 183 RIMQGLIKQAKFHQLKDAEALYDLLKQEMAAILQPVSQPLQIDSSKTPYVILMIGVNGVG 242 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+K G VMLAAGDTFR+AA++QL++W R + G+D+A++ + Sbjct: 243 KTTTIGKLAKHFQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNHIPVIAQHTGADSASVIF 302 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A + A+++ +D+LI DTAGRL N LM + K++RV+K+LD APH V+ LDA+TGQ Sbjct: 303 DAIQAAKSRNIDILIADTAGRLQNKGHLMEELKKIVRVMKKLDDSAPHEVMLTLDASTGQ 362 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NA+ Q ++F G G+ +TK+DGTA+GG + I IP+ ++GVGE I DL PF A Sbjct: 363 NAISQAKLFGEAVGVNGITLTKLDGTAKGGVIFAIANQFGIPIRYIGVGEAIEDLRPFEA 422 Query: 304 KDFSAVIT 311 DF + Sbjct: 423 NDFIEALF 430 >gi|312963639|ref|ZP_07778120.1| signal recognition particle-docking protein FtsY [Pseudomonas fluorescens WH6] gi|311282148|gb|EFQ60748.1| signal recognition particle-docking protein FtsY [Pseudomonas fluorescens WH6] Length = 463 Score = 325 bits (833), Expect = 6e-87, Method: Composition-based stats. Identities = 125/307 (40%), Positives = 189/307 (61%), Gaps = 3/307 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQK 65 + + +L +G + TS + EG+ + ++ +DD + E++E L+ +D+GV Sbjct: 152 ETSKTGFFARLKQGLSKTSASIGEGMASLFLGKKVIDDELLEDIETRLLTADVGVEATAV 211 Query: 66 IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 I++ L K K ++ LY + + ML P+ P ++P VILVVGVNG GK Sbjct: 212 IIQSLTQKVARKQLTDADALYKSLQAELAAMLKPVEAPLVI-TPNKPFVILVVGVNGAGK 270 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++ Sbjct: 271 TTTIGKLAKKLQGEGKKVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVIFD 330 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQN Sbjct: 331 AVQAAKARNIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQN 390 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A+ Sbjct: 391 AISQAKQFNQTVQLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAE 450 Query: 305 DFSAVIT 311 F + Sbjct: 451 PFVQALF 457 >gi|253686507|ref|YP_003015697.1| signal recognition particle-docking protein FtsY [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753085|gb|ACT11161.1| signal recognition particle-docking protein FtsY [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 495 Score = 325 bits (833), Expect = 6e-87, Method: Composition-based stats. Identities = 123/316 (38%), Positives = 194/316 (61%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 ++ ++ + +L + T L G + +++DD + +ELE+ L+ +D+GV Sbjct: 181 VAQEQERPTKEGFFARLKRSLVKTRQNLGSGFIGLFRGKKIDDDLFDELEEQLLVADVGV 240 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +KI+ L + + L+ + + + ++L + P N + P+VIL+VGV Sbjct: 241 ETTRKIITSLTEHASRRQLKDADTLFVKLKDEMAEILAKVDAPLNIE-GKTPYVILMVGV 299 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGK++++ G VMLAAGDTFR+AA++QL++W R + V G+D+A Sbjct: 300 NGVGKTTTIGKMARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVAVVAQHTGADSA 359 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+A+ VDVLI DTAGRL N + LM + K++RV+K+LD APH V+ LDA Sbjct: 360 SVIFDAIQAAKARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTLDA 419 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL Sbjct: 420 STGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFAIPIRYIGVGEGIEDLR 479 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + D Sbjct: 480 PFKADDFIEALFARED 495 >gi|229593151|ref|YP_002875270.1| cell division protein [Pseudomonas fluorescens SBW25] gi|229365017|emb|CAY53174.1| cell division protein [Pseudomonas fluorescens SBW25] Length = 469 Score = 325 bits (833), Expect = 6e-87, Method: Composition-based stats. Identities = 126/309 (40%), Positives = 189/309 (61%), Gaps = 3/309 (0%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVA 63 V + + +L +G + TS + EG+ + ++ +DD + E++E L+ +D+GV Sbjct: 156 PVETSKAGFFSRLKQGLSKTSASIGEGMASLFLGKKVIDDELLEDIETRLLTADVGVEAT 215 Query: 64 QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 I++ L K K ++ LY + + ML P+ P +P VILVVGVNG Sbjct: 216 AVIIQSLTQKVARKQLTDADALYKSLQAELAAMLKPVEAPLVI-TPKKPFVILVVGVNGA 274 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 275 GKTTTIGKLAKKLQSEGKKVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVI 334 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TG Sbjct: 335 FDAVQAAKARNIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTG 394 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F Sbjct: 395 QNAISQAKQFNQTVQLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFE 454 Query: 303 AKDFSAVIT 311 A+ F + Sbjct: 455 AEPFVQALF 463 >gi|149378431|ref|ZP_01896125.1| signal recognition particle-docking protein FtsY [Marinobacter algicola DG893] gi|149357281|gb|EDM45809.1| signal recognition particle-docking protein FtsY [Marinobacter algicola DG893] Length = 400 Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats. Identities = 126/304 (41%), Positives = 193/304 (63%), Gaps = 2/304 (0%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 +S ++ KG T L G D+ S +++D+ + EE+E L+ +D+GV +I+E Sbjct: 91 QVSVFERIRKGLGKTRANLTGGFADLFSIGKKVDEDLLEEIETTLLMADVGVTATSEIIE 150 Query: 69 ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L K + L + + +H +L ++KP D S +P+VIL+VGVNGVGKTT Sbjct: 151 SLTDKLERNQLKDGEALRKALRDELHGLLADVTKPLEIDASKKPYVILMVGVNGVGKTTT 210 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+K G VMLAAGDTFR+AA++QL++W +R + V G+D+A++ ++A + Sbjct: 211 IGKLTKLFQRDGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVIFDAVQ 270 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 AQ++ VDV+I DTAGRL N LM+ + K++RV+K+LD APH V+ VLDA TGQNAL Sbjct: 271 SAQSRGVDVVIADTAGRLQNKDNLMSELEKVVRVMKKLDESAPHEVMLVLDAGTGQNALS 330 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 Q ++F G +G+ +TK+DGTA+GG + I ++P+ ++GVGE ++DL F A+ F Sbjct: 331 QAQVFQQAVGVSGITLTKLDGTAKGGIVFAIARQLQLPIRYIGVGEQVDDLRSFDARTFV 390 Query: 308 AVIT 311 + Sbjct: 391 DALF 394 >gi|261819462|ref|YP_003257568.1| cell division protein FtsY [Pectobacterium wasabiae WPP163] gi|261603475|gb|ACX85961.1| signal recognition particle-docking protein FtsY [Pectobacterium wasabiae WPP163] Length = 471 Score = 324 bits (832), Expect = 8e-87, Method: Composition-based stats. Identities = 124/316 (39%), Positives = 194/316 (61%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 ++ ++ + +L + T L G + +++DD + +ELE+ L+ +D+GV Sbjct: 157 VAQEQERPTKEGFFARLKRSLVKTRQNLGSGFIGLFRGKKIDDDLFDELEEQLLIADVGV 216 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +KI+ L + + L+ + E + ++L + P N + P+VIL+VGV Sbjct: 217 ETTRKIISSLTEHVSRRQLKDADTLFVKLKEEMAEILAKVDAPLNIE-GKTPYVILMVGV 275 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGK++++ G VMLAAGDTFR+AA++QL++W R + V G+D+A Sbjct: 276 NGVGKTTTIGKMARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVAVVAQHTGADSA 335 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+A+ VDVLI DTAGRL N + LM + K++RV+K+LD APH V+ LDA Sbjct: 336 SVIFDAIQAAKARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTLDA 395 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL Sbjct: 396 STGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFAIPIRYIGVGEGIEDLR 455 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + D Sbjct: 456 PFKADDFIEALFARED 471 >gi|148652808|ref|YP_001279901.1| signal recognition particle-docking protein FtsY [Psychrobacter sp. PRwf-1] gi|148571892|gb|ABQ93951.1| signal recognition particle-docking protein FtsY [Psychrobacter sp. PRwf-1] Length = 397 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 134/310 (43%), Positives = 198/310 (63%), Gaps = 2/310 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62 QK + W ++ G + + L EG+ +I I + +DD + EE+ED L+ +DIGV Sbjct: 84 QKEDKKRGGWFSRMKSGLSKSRKNLAEGVANILIGGKEIDDELLEEVEDQLLVADIGVEA 143 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 KI++ L + D+ LY + + + ++L P P D S +P VILVVGVNG Sbjct: 144 TDKIIKSLTEQTARGDLIYSHSLYKALQKELVEILEPKVAPLIIDTSKKPFVILVVGVNG 203 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT IGKL+K++ G VMLAAGDTFR+AA +QL++W +R + V G+D+A++ Sbjct: 204 VGKTTTIGKLAKRLQGEGKSVMLAAGDTFRAAATEQLQVWGERNNIPVVAQGHGADSASV 263 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A+AK +DVLI DTAGRL N + LMA + K++R++++ DP APH + VLDA T Sbjct: 264 VFDAMQSAKAKNIDVLIADTAGRLQNKTHLMAELEKVVRIMRKSDPTAPHEGMIVLDAGT 323 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ QV++F+ TG+ +TK+DGTA+GG + I T IP+ ++GVGE I+DL F Sbjct: 324 GQNAINQVKIFNDAVPLTGITITKLDGTAKGGVVFNIANTTDIPIRYIGVGESIDDLRAF 383 Query: 302 VAKDFSAVIT 311 K F A + Sbjct: 384 SPKQFVAALF 393 >gi|120556651|ref|YP_961002.1| signal recognition particle-docking protein FtsY [Marinobacter aquaeolei VT8] gi|120326500|gb|ABM20815.1| signal recognition particle-docking protein FtsY [Marinobacter aquaeolei VT8] Length = 405 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 123/307 (40%), Positives = 191/307 (62%), Gaps = 2/307 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQK 65 +S ++ +G T L G+ D+ S +++D+ + EE+E L+ +D+GV + Sbjct: 97 PETRVSVFERIKQGLGKTRASLTGGLADLFSVGKKIDEDLLEEIETTLLMADVGVTATSE 156 Query: 66 IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 I++ L K + L + + +H +L +++P D +P+VIL+VGVNGVGK Sbjct: 157 IIDALTEKLERNQLKDGEALRKALRDELHGLLKEVARPLEIDAGKQPYVILMVGVNGVGK 216 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+KK G VMLAAGDTFR+AA++QL++W +R + V G+D+A++ ++ Sbjct: 217 TTTIGKLTKKFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVIFD 276 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + AQ++ VDV+I DTAGRL N LM + K++RV+K+LD APH V+ VLDA TGQN Sbjct: 277 AIQSAQSRGVDVVIADTAGRLQNKDNLMNELSKVVRVMKKLDESAPHEVMLVLDAGTGQN 336 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 AL Q ++F G +G+ +TK+DGTA+GG + I ++P+ ++GVGE DL F A+ Sbjct: 337 ALSQAQVFQQAVGVSGITLTKLDGTAKGGIVFAIARQLQLPIRYIGVGEQAEDLRSFDAE 396 Query: 305 DFSAVIT 311 F + Sbjct: 397 TFVDALF 403 >gi|238021574|ref|ZP_04602000.1| hypothetical protein GCWU000324_01474 [Kingella oralis ATCC 51147] gi|237866188|gb|EEP67230.1| hypothetical protein GCWU000324_01474 [Kingella oralis ATCC 51147] Length = 542 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 116/309 (37%), Positives = 184/309 (59%), Gaps = 2/309 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + W +L +G + + + + + ++D+ + EELE +L+ SD+G+ Sbjct: 234 ETEPETKPGWASRLKQGLTKSRNHMAKSLAGVFGGGQIDEDLYEELETVLLTSDMGIEAT 293 Query: 64 QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 ++++ E+ + K + L + + ++ +L PL +P + P VI++ G+NG Sbjct: 294 EQLMREVRDRVSLKGLKDGNELRQALKDAVYDLLKPLEQPLAIPENGAPFVIMLAGINGA 353 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K G V+LAAGDTFR+AA +QL+ W +R + S+ D+AA+ Sbjct: 354 GKTTSIGKLAKYFQAQGKSVILAAGDTFRAAAREQLQEWGERNGVTVI-SQAKGDSAAVC 412 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+A+++D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA G Sbjct: 413 FDAVEAAKARQIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKSLPDAPHEIIVVLDANIG 472 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ QV F G TGLI+TK+DGTA+GG L + + IPV ++GVGE I+DL PF Sbjct: 473 QNAVNQVVAFDDALGVTGLIVTKLDGTAKGGVLAALASSRAIPVRYIGVGESIDDLRPFN 532 Query: 303 AKDFSAVIT 311 AKDF + Sbjct: 533 AKDFVDALL 541 >gi|296114906|ref|ZP_06833554.1| signal recognition particle-docking protein FtsY [Gluconacetobacter hansenii ATCC 23769] gi|295978612|gb|EFG85342.1| signal recognition particle-docking protein FtsY [Gluconacetobacter hansenii ATCC 23769] Length = 331 Score = 324 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 136/303 (44%), Positives = 208/303 (68%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +L + +L G + ++ KL G++ + + R+LDD E+LEDLLI +D+G VA K+++ Sbjct: 2 ALGFFSRLKAGLSRSTQKLSGGLSAVFTRRKLDDQALEDLEDLLISADLGPNVAAKVIDS 61 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + ++ K+V+ + V ++E I K+L P++ PF D +H+PHV+LVVGVNG GKTT IG Sbjct: 62 FRSSKFGKEVTDEEVRTALAEEIAKILEPVAIPFEPDPAHKPHVVLVVGVNGTGKTTTIG 121 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 K+++ + G KVM+ AGDTFR+AA++QL++W +R A + +DAA LA+EA K+ Sbjct: 122 KMARYYGEQGKKVMMVAGDTFRAAAVEQLQVWGERVGAPVIAGPPNADAAGLAFEALKKG 181 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ D+L++DTAGRLHN LM + K+IRV+++ D APHSV VLDATTGQNA+ QV Sbjct: 182 KAEGADLLLVDTAGRLHNKGALMEELAKIIRVMRKFDETAPHSVFLVLDATTGQNAMEQV 241 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 +F + TGL++TK+DG+ARGG ++ + +PV+ +GVGE DL PF A+ F+ Sbjct: 242 RVFKELVNVTGLVVTKLDGSARGGIVVALADAFGLPVHMVGVGEQAEDLRPFSAQAFAQG 301 Query: 310 ITG 312 + G Sbjct: 302 LVG 304 >gi|119944395|ref|YP_942075.1| signal recognition particle-docking protein FtsY [Psychromonas ingrahamii 37] gi|119862999|gb|ABM02476.1| signal recognition particle-docking protein FtsY [Psychromonas ingrahamii 37] Length = 453 Score = 324 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 125/310 (40%), Positives = 199/310 (64%), Gaps = 1/310 (0%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62 QK ++L + + + T L + G+ + S +++D + EELE+ LI +DIGV Sbjct: 137 KQKTEEKALGFFARFKQSLTKTRLSIGSGLYSLFSGKKIDADLFEELEEQLILADIGVDT 196 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 KI+++L + K + LY + E + +L + +P D + P+VIL+VGVNG Sbjct: 197 TLKIIDKLTAQANRKQLKDAEALYTLLKEDLSGILQEVEQPLVIDETKSPYVILMVGVNG 256 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT IGKL+KK G VMLAAGDTFR+AA++QL++W +R + + + GSD+A++ Sbjct: 257 VGKTTTIGKLAKKYQQQGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQQTGSDSASV 316 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A A+A+ +DVLI DTAGRL N LM + K++R++++ DP APH ++ +DA+T Sbjct: 317 LFDAMDAAKARGIDVLIADTAGRLQNKEHLMDELSKVVRIMRKKDPSAPHEIMLTIDAST 376 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q ++F+ G TG+ +TK+DGTA+GG + I +K+P+ ++G GEGI+DL F Sbjct: 377 GQNAISQADLFNKAVGITGITLTKLDGTAKGGVIFSIADKYKLPIRYIGTGEGIDDLREF 436 Query: 302 VAKDFSAVIT 311 A++F + Sbjct: 437 NAREFIDALF 446 >gi|23015509|ref|ZP_00055283.1| COG0552: Signal recognition particle GTPase [Magnetospirillum magnetotacticum MS-1] Length = 330 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 148/306 (48%), Positives = 212/306 (69%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 E+ SW +L G A +S KL +G+ D+ + R+LDD E+LEDLLI +D+GVA A ++ Sbjct: 24 EETASWFGRLKSGLAKSSSKLTQGLGDLFTKRKLDDEALEDLEDLLITADLGVATAARVT 83 Query: 68 EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 + L R+ +DV+ + ++E I ++L P+++P D + +PHV+LVVGVNG GKTT Sbjct: 84 KHLAKTRFGQDVTSDEIKATLAEEITRILAPVARPLAIDPNRKPHVVLVVGVNGSGKTTT 143 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGK++K DAGL V LAAGDTFR+AA++QLK+W +RT+ + E G+DAA LAY+A + Sbjct: 144 IGKMAKTYKDAGLSVTLAAGDTFRAAAVEQLKVWGERTNCPVIARETGADAAGLAYDAVE 203 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 Q++A+ D+L IDTAGRL N + LMA + K++R +K++D APHSVL VLDAT GQNA Sbjct: 204 QSRARGDDLLFIDTAGRLQNKADLMAELAKLVRSIKKVDETAPHSVLLVLDATVGQNAHS 263 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 QVE+F + +GL++TK+DGTARGG L+ + +PV+ +GVGE DL PF A F+ Sbjct: 264 QVEIFKDMVAVSGLVLTKLDGTARGGVLVALAEKFGLPVHAIGVGEKAEDLRPFEADAFA 323 Query: 308 AVITGC 313 + G Sbjct: 324 KSLVGM 329 >gi|325267267|ref|ZP_08133929.1| cell division protein FtsY [Kingella denitrificans ATCC 33394] gi|324981204|gb|EGC16854.1| cell division protein FtsY [Kingella denitrificans ATCC 33394] Length = 521 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 123/312 (39%), Positives = 186/312 (59%), Gaps = 2/312 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q E L+W +L +G + + + + + ++D+ + EELE +L+ SD+G+ Sbjct: 208 QPEEEEPLNWTARLVRGLDKSRNHMAKSLAGVFGGGKIDEDLYEELETVLLTSDMGIEAT 267 Query: 64 QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + +++E+ + + + + L + E I+ +L PL KP + +P VI++ G+NG Sbjct: 268 EHLMKEVRERVSLRGLKDGKELRQALKEAIYDLLKPLEKPLVLPENGQPFVIMMAGINGA 327 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K G VMLAAGDTFR+AA +QL+ W +R + E G A A+ Sbjct: 328 GKTTSIGKLAKYFQKQGKSVMLAAGDTFRAAAREQLQEWGERNGVVVISQEKGDSA-AVC 386 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+A+K+DV++ DTAGRL LM I K+ RVL++ P APH ++ VLDA G Sbjct: 387 FDAVEAAKARKIDVVLADTAGRLPTQLHLMEEIKKVKRVLQKSMPDAPHEIIVVLDANIG 446 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ QV F G TGLI+TK+DGTA+GG L + + IPV F+GVGE I+DL PF Sbjct: 447 QNAVNQVVAFDDALGVTGLIVTKLDGTAKGGVLAALASSRAIPVRFIGVGERIDDLRPFN 506 Query: 303 AKDFSAVITGCL 314 A+ F + Sbjct: 507 ARAFVDALLDEG 518 >gi|169633653|ref|YP_001707389.1| cell division protein [Acinetobacter baumannii SDF] gi|169152445|emb|CAP01410.1| cell division protein [Acinetobacter baumannii] Length = 368 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 133/312 (42%), Positives = 196/312 (62%), Gaps = 2/312 (0%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGV 60 + + + ++ +G + T +G+ +I I + +DD + EE+E L+ +DIGV Sbjct: 53 PSTEPEQPKSGFFGRMKEGLSKTRRNFTDGMVNILIGGKEIDDELLEEVEGQLLVADIGV 112 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 + I+ L + D+ LY + E + +L P KP + D + P+VIL+VGV Sbjct: 113 DATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGV 172 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+K++ G KVMLAAGDTFR+AA +QL+IW +R V G+D+A Sbjct: 173 NGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSA 232 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+AK +DVLI DTAGRLHN S LM + K+ RV++++D APH ++ V+DA Sbjct: 233 SVIFDASESARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDA 292 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQNA+ QV+ F G TG+ +TK+DGTA+GG L I +P+ F+GVGE I+DL Sbjct: 293 GTGQNAINQVQEFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLR 352 Query: 300 PFVAKDFSAVIT 311 PF AK F A + Sbjct: 353 PFSAKSFVAALF 364 >gi|71278165|ref|YP_266925.1| signal recognition particle-docking protein FtsY [Colwellia psychrerythraea 34H] gi|71143905|gb|AAZ24378.1| signal recognition particle-docking protein FtsY [Colwellia psychrerythraea 34H] Length = 481 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 133/308 (43%), Positives = 197/308 (63%), Gaps = 1/308 (0%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 + A L + +L +G + T L G+ D+ +++DD + EELE L+ +D+GV Sbjct: 172 EKAESKLGFFARLKQGLSKTRQNLGGGLIDLFRGKQIDDDLFEELETHLLLADVGVETTM 231 Query: 65 KIVEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 KI+E L K + LYD+ + + K++ +S+P P VIL+VGVNGVG Sbjct: 232 KIIESLTQSANRKQLKDASALYDLLKIELKKVIEDVSQPLVIPEDDGPFVILMVGVNGVG 291 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+K+ G VMLAAGDTFR+AA++QL++W +R + + G+D+A++ + Sbjct: 292 KTTTIGKLAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQHTGADSASVIF 351 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A A+A+KVD++I DTAGRL N + LM + K++RV+K+LD +APH V+ LDA TGQ Sbjct: 352 DAISAAKARKVDIIIADTAGRLQNKAHLMEELKKVVRVMKKLDVNAPHEVMLTLDAGTGQ 411 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NAL Q ++F G TGL +TK+DGTA+GG + + H IP+ +LGVGEGI+DL PF + Sbjct: 412 NALSQTKLFDEAVGLTGLTITKLDGTAKGGVIFAVADKHSIPIRYLGVGEGIDDLRPFNS 471 Query: 304 KDFSAVIT 311 DF + Sbjct: 472 DDFIDALF 479 >gi|304415087|ref|ZP_07395823.1| fused Signal Recognition Particle (SRP) receptor and membrane binding protein/conserved protein [Candidatus Regiella insecticola LSR1] gi|304283060|gb|EFL91487.1| fused Signal Recognition Particle (SRP) receptor and membrane binding protein/conserved protein [Candidatus Regiella insecticola LSR1] Length = 426 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 125/315 (39%), Positives = 196/315 (62%), Gaps = 2/315 (0%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 SN + ++ +L K T + G+ ++ +++DD E+LE+ L+ +DIGV Sbjct: 113 SNVQKQPNKENFFTRLKKSLLKTKQNIGFGLLNLFRGKKIDDDFFEQLEEKLLIADIGVE 172 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 KI++ L K + VLY+ + E + ++L + KP + + P VIL+VGVN Sbjct: 173 TTHKIIKSLTEHANRKQLKDAEVLYEKLKETMAEILAKVDKPLETNGKN-PCVILMVGVN 231 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT IGKL+ + G VMLAAGDTFR+AA++QL++W +R + + G+D+A+ Sbjct: 232 GVGKTTTIGKLAYQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQHTGADSAS 291 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++AF+ A+A+ +DVL+ DTAGRL N + LM + K++RV+K++D APH ++ LDA+ Sbjct: 292 VIFDAFQAAKARNIDVLLADTAGRLQNKTDLMIELQKIVRVMKKIDEKAPHEIMLTLDAS 351 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNA+ Q ++FH G TG+ +TK+DG+A+GG + I IP+ ++GVGE I DL Sbjct: 352 TGQNAVNQAKLFHEAVGLTGINLTKLDGSAKGGVIFAIADQFGIPIRYIGVGEAIEDLRL 411 Query: 301 FVAKDFSAVITGCLD 315 F A DF + D Sbjct: 412 FKADDFIEALFARED 426 >gi|329896518|ref|ZP_08271576.1| Signal recognition particle receptor protein FtsY [gamma proteobacterium IMCC3088] gi|328921735|gb|EGG29108.1| Signal recognition particle receptor protein FtsY [gamma proteobacterium IMCC3088] Length = 375 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 125/305 (40%), Positives = 191/305 (62%), Gaps = 3/305 (0%) Query: 9 ESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIV 67 E W +L +G + T +L G+ ++ R+ +D + E+LE L+ +D+G+ IV Sbjct: 67 EKSGWYARLKQGLSRTRGQLSSGLGNLFLGRKVIDADLLEDLESTLLMADVGIEATTHIV 126 Query: 68 EELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 E+L + K+++ +L + + + M+ P K + P VIL+VGVNG GKTT Sbjct: 127 EQLTAQVSRKELADGDALLRALKQALTNMVGPYEKALPLAATA-PTVILMVGVNGAGKTT 185 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+++ G VMLAAGDTFR+AA++QL++W +R + V G+D+A++ ++A Sbjct: 186 TIGKLAQRYKAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQHTGADSASVIFDAL 245 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + AQA+ VDVLI DTAGRLHN LM + K++RV+K+L+P APH V+ VLDAT GQNA+ Sbjct: 246 QAAQARGVDVLIADTAGRLHNKDNLMEELKKVVRVMKKLNPEAPHEVMLVLDATMGQNAI 305 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 Q + F A +G+ +TK+DGTA+GG + I IP+ ++GVGE + DL PF A+ F Sbjct: 306 AQAQHFKAAVDVSGITLTKLDGTAKGGVIFAIAHKLGIPIRYIGVGESLEDLRPFEAEPF 365 Query: 307 SAVIT 311 + Sbjct: 366 VNALF 370 >gi|224827259|ref|ZP_03700353.1| signal recognition particle-docking protein FtsY [Lutiella nitroferrum 2002] gi|224600548|gb|EEG06737.1| signal recognition particle-docking protein FtsY [Lutiella nitroferrum 2002] Length = 358 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 116/309 (37%), Positives = 188/309 (60%), Gaps = 3/309 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + V + SW +L G + T KL + + + ++D+ + +ELE +L+ +D+GV Sbjct: 51 EAVPPKKPSWTERLKAGLSKTRDKLGKSLAGLFGGGKIDEDLYDELETVLLTADMGVDAT 110 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 +++++ + + + L + + ++ ++ PL +P + +P+VI++ GVNG Sbjct: 111 LHLLKDVRERVSLRGLKDAAELKGALKDSLNDLIGPLEQPLDI-AGRKPYVIMMAGVNGA 169 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K G V+LAAGDTFR+AA +QL W +R + + + G A A+ Sbjct: 170 GKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLIAWGERNNVTVIAQQSGDSA-AVC 228 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A K AQA+ +D+++ DTAGRL LM I K+ RV+++ P APH V+ VLDA G Sbjct: 229 FDAIKAAQARGIDIVLADTAGRLPTQLHLMEEIKKVKRVIQKALPEAPHEVMLVLDANIG 288 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ QV++F G TGLI+TK+DGTA+GG + I + +P+ F+GVGE I+DL PF Sbjct: 289 QNAINQVKVFDEALGLTGLILTKLDGTAKGGVIAAIAKQNPVPLRFVGVGESIDDLRPFN 348 Query: 303 AKDFSAVIT 311 A+D+ + Sbjct: 349 ARDYVDALF 357 >gi|330831384|ref|YP_004394336.1| ABC transporter permease [Aeromonas veronii B565] gi|328806520|gb|AEB51719.1| ABC transporter permease component [Aeromonas veronii B565] Length = 557 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 127/308 (41%), Positives = 193/308 (62%), Gaps = 1/308 (0%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 + + + +L + T + G + +++DD + EELE L+ +D+GV Sbjct: 246 QDKPQREGFFARLKRSLVRTKENIGSGFFGLFRGKKIDDELFEELETQLLTADLGVDTTT 305 Query: 65 KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 +I+E L+ K + LY + + + +ML + +P D S +P+VIL+VGVNGVG Sbjct: 306 RIIEGLVQHADRKQLKDAEALYGLLKQDMGEMLAKVEQPLVIDTSKKPYVILMVGVNGVG 365 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+K+ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ Y Sbjct: 366 KTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIY 425 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A + A+++ DVLI DTAGRL N S LM + K++RV+K+LD APH ++ LDA TGQ Sbjct: 426 DAIEAARSRGADVLIADTAGRLQNKSNLMEELKKVVRVMKKLDEEAPHEIMLTLDAGTGQ 485 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NAL Q ++F G TG+ +TK+DGTA+GG + + +IP+ ++GVGEGI+DL PFVA Sbjct: 486 NALSQAKLFSEAVGLTGITLTKLDGTAKGGVIFAVADKFQIPIRYIGVGEGIDDLRPFVA 545 Query: 304 KDFSAVIT 311 DF + Sbjct: 546 NDFIEALF 553 >gi|254427512|ref|ZP_05041219.1| signal recognition particle-docking protein FtsY, putative [Alcanivorax sp. DG881] gi|196193681|gb|EDX88640.1| signal recognition particle-docking protein FtsY, putative [Alcanivorax sp. DG881] Length = 394 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 129/302 (42%), Positives = 194/302 (64%), Gaps = 2/302 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + ++ +G + T L +G+ D++ ++ +DD + EE+E L+ +D+GV IV+ L Sbjct: 88 GFWTRMKQGMSKTRKGLGKGLADLLVGAKEIDDEIFEEIETQLLVADVGVEATDVIVQAL 147 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + +++ LY+ + + K+L+P+ +P D S +P+VIL+VGVNGVGKTT IG Sbjct: 148 TDQVTREELVDADALYESLQNELRKLLVPVDQPMQIDGSKKPYVILMVGVNGVGKTTTIG 207 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ + G VMLAAGDTFR+AA++QL++W +R V G+D+A++ Y+A + A Sbjct: 208 KLACRFKAEGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVVAQHTGADSASVVYDAVQAA 267 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 Q++ D+LI DTAGRLH LM + K+ RV+K+L P APH VL VLDA TGQNA+ Q Sbjct: 268 QSRGADILIADTAGRLHTRGNLMEELTKVTRVMKKLIPDAPHEVLLVLDAGTGQNAINQA 327 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F AG TGL +TK+DGTA+GG L + +P+ F+GVGE + DL PF A++F Sbjct: 328 EQFRDAAGVTGLALTKLDGTAKGGILFALAKRTGLPIRFIGVGERLEDLRPFHAEEFVQA 387 Query: 310 IT 311 + Sbjct: 388 LF 389 >gi|126664539|ref|ZP_01735523.1| signal recognition particle-docking protein FtsY [Marinobacter sp. ELB17] gi|126630865|gb|EBA01479.1| signal recognition particle-docking protein FtsY [Marinobacter sp. ELB17] Length = 406 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 123/307 (40%), Positives = 193/307 (62%), Gaps = 2/307 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQK 65 +S + ++ +G T G+ D+ S +++D + EE+E L+ +D+GV + Sbjct: 99 PEPQISVLERIRRGLGKTRASFTGGLADMFSAGKKIDADLLEEIETTLLMADVGVTATTE 158 Query: 66 IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 I+E L K + L + + +H +L +SKP D +P+VIL+VGVNGVGK Sbjct: 159 IIESLTEKLKRDQLKDGEALRQALRDQLHGLLKDVSKPLVIDAQTKPYVILMVGVNGVGK 218 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+KK D G+ V+LAAGDTFR+AA++QL++W DR + G+D+A++ ++ Sbjct: 219 TTTIGKLTKKFQDEGMSVLLAAGDTFRAAAMEQLQVWGDRNKVPVIAQHTGADSASVIFD 278 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + A+++ +DV+I DTAGRL N LM+ + K++RV+K+LD APH V+ VLDA TGQN Sbjct: 279 AIQSAKSRGIDVVIADTAGRLQNKDNLMSELEKVVRVMKKLDTAAPHEVMLVLDAGTGQN 338 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 AL Q ++F G +G+ +TK+DGTA+GG + I ++P+ F+G+GE + DL F A+ Sbjct: 339 ALNQAQVFQQAVGVSGITLTKLDGTAKGGIVFAIARQLQLPIRFIGIGEQVEDLRSFDAR 398 Query: 305 DFSAVIT 311 F + Sbjct: 399 AFVDALF 405 >gi|292492241|ref|YP_003527680.1| signal recognition particle-docking protein FtsY [Nitrosococcus halophilus Nc4] gi|291580836|gb|ADE15293.1| signal recognition particle-docking protein FtsY [Nitrosococcus halophilus Nc4] Length = 356 Score = 322 bits (825), Expect = 5e-86, Method: Composition-based stats. Identities = 130/311 (41%), Positives = 192/311 (61%), Gaps = 4/311 (1%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVA 61 + V + L ++L T L GI D+ + + +DD + EE+E L+ +D+GV Sbjct: 36 TETVKKQRL--FKRLRNRLGRTRGNLTGGIADLMLGKKNIDDELLEEIETQLLVADVGVE 93 Query: 62 VAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 Q I++ L + K + L + E + ++L+P S P +P VIL+VGVN Sbjct: 94 ATQSIIDNLTVRVSRKQLKDPAALMAALRENMQELLLPSSHPLVIPEGIKPFVILMVGVN 153 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT IGKL+KK G VMLAAGDTFR+AA++QL+ W +R + G+D+A+ Sbjct: 154 GVGKTTTIGKLAKKFQAEGRSVMLAAGDTFRAAAVEQLQAWGERNQVPVIAQRSGADSAS 213 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++A + AQA+ +DVLI DTAGRLH + LM + K+ RV+ ++DP APH ++ +DA Sbjct: 214 VIFDALQSAQARGIDVLIADTAGRLHTQANLMEELKKVKRVMGKVDPQAPHEIMLTVDAG 273 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNAL Q + FH G TG+ +TK+DGTA+GG + I +P+ F+GVGEGI+DL P Sbjct: 274 TGQNALNQAKQFHEAVGLTGITLTKLDGTAKGGVIFAIAKKMALPIRFIGVGEGIDDLRP 333 Query: 301 FVAKDFSAVIT 311 F A++F A + Sbjct: 334 FDAEEFVAALL 344 >gi|332308276|ref|YP_004436127.1| signal recognition particle-docking protein FtsY [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175605|gb|AEE24859.1| signal recognition particle-docking protein FtsY [Glaciecola agarilytica 4H-3-7+YE-5] Length = 483 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 124/310 (40%), Positives = 199/310 (64%), Gaps = 3/310 (0%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62 ++K A + + KL + + T + L G + + +DD + EELE L+ +D+G+ Sbjct: 163 SEKPA--KMGLLAKLRQSLSRTKVNLGSGFVSLFRGKAIDDDLYEELETQLLVADVGMDT 220 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 KI+++L + LY + + + ++L +S+P + P VIL+VGVNG Sbjct: 221 TNKIIKKLTDGAKRNQLKDGDALYQLLKQQMSEILQEVSQPLVPEADEGPFVILMVGVNG 280 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT IGK++K+ G KVMLAAGDTFR+AA++QL++W +R + + + GSD+A++ Sbjct: 281 VGKTTTIGKMAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQKTGSDSASV 340 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 Y+A + A+A+ VDVLI DTAGRL N LM + K++RV+++++P+APH V+ LDA T Sbjct: 341 IYDALESAKARNVDVLIADTAGRLQNKEHLMEELKKVLRVMRKINPNAPHEVMLTLDAAT 400 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q ++F+ G +G+ +TK+DGTA+GG + + KIP+ ++GVGEGI+DL PF Sbjct: 401 GQNAVSQTKLFNQAVGLSGITLTKLDGTAKGGVIFALADQFKIPIRYIGVGEGIDDLRPF 460 Query: 302 VAKDFSAVIT 311 + +F + Sbjct: 461 ASDEFVEALF 470 >gi|332975302|gb|EGK12201.1| cell division protein FtsY [Psychrobacter sp. 1501(2011)] Length = 407 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 133/309 (43%), Positives = 196/309 (63%), Gaps = 2/309 (0%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVA 63 + + W ++ G + L EG+ +I I + +DD + EE+ED L+ +DIGV Sbjct: 95 EEDKKRGGWFSRMKSGLTKSRKNLAEGVANILIGGKEIDDELLEEVEDQLLVADIGVEAT 154 Query: 64 QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI++ L + D+ LY + + + ++L P P D S +P VILVVGVNGV Sbjct: 155 DKIIKSLTEQTARGDLIYSHSLYKALQKELVEILEPKVAPLIIDTSKKPFVILVVGVNGV 214 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K++ G VMLAAGDTFR+AA +QL+IW +R + V G+D+A++ Sbjct: 215 GKTTTIGKLAKRLQAEGKSVMLAAGDTFRAAATEQLQIWGERNNIPVVAQGHGADSASVV 274 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+AK +DVLI DTAGRL N + LMA + K++R++++ DP APH + VLDA TG Sbjct: 275 FDAMQSAKAKNIDVLIADTAGRLQNKTHLMAELEKVVRIMRKSDPTAPHEGMIVLDAGTG 334 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ QV++F+ TG+ +TK+DGTA+GG + I T IP+ ++GVGE I+DL F Sbjct: 335 QNAINQVKIFNDAVPLTGITITKLDGTAKGGVVFNIANTTDIPIRYIGVGESIDDLRAFS 394 Query: 303 AKDFSAVIT 311 K F A + Sbjct: 395 PKQFVAALF 403 >gi|325275629|ref|ZP_08141529.1| signal recognition particle-docking protein FtsY [Pseudomonas sp. TJI-51] gi|324099236|gb|EGB97182.1| signal recognition particle-docking protein FtsY [Pseudomonas sp. TJI-51] Length = 329 Score = 321 bits (824), Expect = 7e-86, Method: Composition-based stats. Identities = 130/310 (41%), Positives = 193/310 (62%), Gaps = 2/310 (0%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKI 66 + +L +G + TS + EG+ + ++ +DD + +E+E L+ +D+GV I Sbjct: 20 QAKPGFFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSTI 79 Query: 67 VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 V+ L K K ++ LY + E + +L P+ +P ++P+VILVVGVNG GKT Sbjct: 80 VQNLTQKVARKQLADADALYKSLQEELAALLRPVEQPLKVQAQNKPYVILVVGVNGAGKT 139 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A Sbjct: 140 TTIGKLAKKLQQEGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFDA 199 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + A+A+ VDVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA Sbjct: 200 VQAAKARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDAEAPHEVLLVLDAGTGQNA 259 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + Q + F+ TGL +TK+DGTA+GG + + K+P+ F+GVGEGI+DL F A+ Sbjct: 260 ISQAKYFNQSVELTGLALTKLDGTAKGGVIFALAKQFKLPIRFIGVGEGIDDLRTFEAEP 319 Query: 306 FSAVITGCLD 315 F + D Sbjct: 320 FVKALFAERD 329 >gi|301155326|emb|CBW14792.1| fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein [Haemophilus parainfluenzae T3T1] Length = 485 Score = 321 bits (824), Expect = 8e-86, Method: Composition-based stats. Identities = 124/310 (40%), Positives = 194/310 (62%), Gaps = 2/310 (0%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62 Q+ SE + +L KG T + G +++DD + +ELE+ L+ +DIGV Sbjct: 171 TQEKPSEG-GFFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDDLFDELEEQLLIADIGVPT 229 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 KI++ L K + +LY + + ++L P+++P D + +P+VIL+VGVNG Sbjct: 230 TNKIIKNLTEHASRKQLQDAELLYQQLKVEMVEILKPVAQPLVIDTTKKPYVILMVGVNG 289 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT IGKL++K + G VMLAAGDTFR+AA++QL++W +R + V GSD+A++ Sbjct: 290 VGKTTTIGKLARKFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASV 349 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A + A A+ +D+LI DTAGRL N + LM + K++RV+++ D APH ++ LDA T Sbjct: 350 IFDAMQSAAARNIDILIADTAGRLQNKNNLMDELKKIVRVMRKYDETAPHEIMLTLDAGT 409 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q ++F G TG+ +TK+DGTA+GG + I +P+ ++GVGE I DL F Sbjct: 410 GQNAISQAKLFDEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLREF 469 Query: 302 VAKDFSAVIT 311 A++F + Sbjct: 470 NAEEFIEALF 479 >gi|34499658|ref|NP_903873.1| cell division protein FtsY [Chromobacterium violaceum ATCC 12472] gi|34105508|gb|AAQ61863.1| cell division protein FtsY [Chromobacterium violaceum ATCC 12472] Length = 375 Score = 321 bits (823), Expect = 9e-86, Method: Composition-based stats. Identities = 117/312 (37%), Positives = 186/312 (59%), Gaps = 3/312 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 + ++ V + +SW +L G A T KL + + + ++D+ + EELE +L+ +D+G+ Sbjct: 65 IPDEPVPLKKMSWTERLKAGLAKTRDKLGKQLAGLFGGGKIDEDLYEELETVLLTADMGM 124 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 + +++++ + K + L + + + ++ PL P N + +P VI++ GV Sbjct: 125 DATEHLLQDVRERVSLKGLKDSSELKGALKDSLQDLIGPLEVPLNVE-GKKPFVIMMTGV 183 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NG GKTT IGKL+K G V+LAAGDTFR+AA +QL W +R + + + G A Sbjct: 184 NGAGKTTSIGKLAKYYQSQGKSVLLAAGDTFRAAAREQLIAWGERNNVTVIAQQGGDSA- 242 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ Y+A + A A+ +D+++ DTAGRL LM I K+ RV+++ P APH V+ VLDA Sbjct: 243 AVCYDAIQAAIARGIDIVLADTAGRLPTQLHLMEEIKKVKRVIQKALPDAPHEVVLVLDA 302 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 GQN + QV+ F G TGLI+TK+DGTA+GG + I IP+ F+GVGE I+DL Sbjct: 303 NIGQNTVNQVKAFDDALGLTGLILTKLDGTAKGGVIAAIAKQRPIPLRFVGVGESIDDLR 362 Query: 300 PFVAKDFSAVIT 311 PF ++D+ + Sbjct: 363 PFDSRDYIDALF 374 >gi|13377875|gb|AAK20880.1|AF334761_1 cell division protein FtsY [Aeromonas hydrophila] Length = 333 Score = 321 bits (823), Expect = 9e-86, Method: Composition-based stats. Identities = 126/308 (40%), Positives = 193/308 (62%), Gaps = 1/308 (0%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 + + + + + T + G + S +++DD + EELE L+ +D+GV + Sbjct: 22 QDKPQREGFFARFKRSMVRTKENIGSGFFGLFSGKKIDDELFEELETQLLTADLGVDTTR 81 Query: 65 KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 +I++ L+ K + LY + + + ML + +P D S +P+VIL+VGVNGVG Sbjct: 82 RIIDGLVQHADRKQLKDAEALYGLLKQDMGAMLAQVEQPLVIDTSKKPYVILMVGVNGVG 141 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+K+ G VMLAAGDTFR+AA++QL++W R + + G+D+A++ Y Sbjct: 142 KTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIY 201 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A + A+++ DVLI DTAGRL N S LM + K++RV+K+LD APH V+ LDA TGQ Sbjct: 202 DAIEAARSRGADVLIADTAGRLQNKSNLMEELKKVVRVMKKLDEEAPHEVMLTLDAGTGQ 261 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NAL Q ++F G G+++TK+DGTA+GG + + +IP+ ++GVGEGI+DL PFVA Sbjct: 262 NALSQAKLFSEAVGLDGIVLTKLDGTAKGGVIFAVADKFQIPIRYIGVGEGIDDLRPFVA 321 Query: 304 KDFSAVIT 311 DF + Sbjct: 322 NDFIEALF 329 >gi|326560132|gb|EGE10522.1| signal recognition particle-docking protein FtsY [Moraxella catarrhalis 46P47B1] gi|326573383|gb|EGE23351.1| signal recognition particle-docking protein FtsY [Moraxella catarrhalis 101P30B1] Length = 313 Score = 321 bits (823), Expect = 9e-86, Method: Composition-based stats. Identities = 133/307 (43%), Positives = 197/307 (64%), Gaps = 2/307 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +E W ++ G + +S L EG+ + ++ +++DD + EE+ED L+ +DIGV + Sbjct: 3 ENEKGGWFSRMKAGLSKSSKNLSEGLVNVLVGGKQIDDELLEEVEDQLLVADIGVNATNR 62 Query: 66 IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 I++ L + D+ LY + + +L P P D + +P+VIL+VGVNGVGK Sbjct: 63 IIKNLTEQTARGDLIYSHALYKALKTELTDILTPKVAPLIIDTTKKPYVILMVGVNGVGK 122 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+K++ + G VMLAAGDTFR+AA +QL+IW +R V GSD+A++ ++ Sbjct: 123 TTTIGKLAKRLQNEGKSVMLAAGDTFRAAATEQLQIWGERNGIPVVAQGHGSDSASVIFD 182 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + A+AK +DVLI DTAGRL N + LM + K++RV+K+ D APH + VLDA TGQN Sbjct: 183 AMQSAKAKGIDVLIADTAGRLQNKTHLMNELEKVVRVMKKGDETAPHETMIVLDAGTGQN 242 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ QV++F TG+ +TK+DGTA+GG + I IP+ F+GVGEGI+DL+PF K Sbjct: 243 AINQVQVFSEAVNLTGISVTKLDGTAKGGVVFNIAQNTDIPIRFIGVGEGIDDLQPFKPK 302 Query: 305 DFSAVIT 311 DF + Sbjct: 303 DFVDALL 309 >gi|78486281|ref|YP_392206.1| signal recognition particle-docking protein FtsY [Thiomicrospira crunogena XCL-2] gi|78364567|gb|ABB42532.1| signal recognition particle-docking protein FtsY [Thiomicrospira crunogena XCL-2] Length = 373 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 126/313 (40%), Positives = 192/313 (61%), Gaps = 2/313 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIG 59 +S + + +L + T E + ++ + +DD + +ELE +L+ +D+G Sbjct: 55 VSTESQKTTRPGLFSRLKNSLSKTRKGFTENLATLVMGRKEIDDDLLDELEMILLTADVG 114 Query: 60 VAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118 V I++ L + K++ ++++ + + + +L P+++P P VIL+VG Sbjct: 115 VEATDTIIQNLTGQVSRKELKEPEKLIQALKQQLETLLEPVTQPLVLPEKEGPFVILMVG 174 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNGVGKTT IGKL+KK + G VMLAAGDTFR+AA++QL+ W +R V + G+D+ Sbjct: 175 VNGVGKTTTIGKLAKKFQNEGKSVMLAAGDTFRAAAVEQLQTWGERNQVPVVAQKTGADS 234 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 AA+ ++A + A AK +DVLI DTAGRLH S LM + K+ RV++++D APH V+ VLD Sbjct: 235 AAVIFDAIQSATAKNIDVLIADTAGRLHTQSNLMEELKKVKRVIQKVDSSAPHEVMLVLD 294 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A TGQNAL Q + F+ TGL +TK+DGTA+GG + + IPV F+GVGE I+DL Sbjct: 295 AGTGQNALSQAQQFYEAVEITGLTLTKLDGTAKGGIIFALAEKLGIPVRFIGVGEAIDDL 354 Query: 299 EPFVAKDFSAVIT 311 PF A +FS + Sbjct: 355 RPFDANEFSEALF 367 >gi|326565395|gb|EGE15572.1| signal recognition particle-docking protein FtsY [Moraxella catarrhalis 103P14B1] gi|326575720|gb|EGE25643.1| signal recognition particle-docking protein FtsY [Moraxella catarrhalis CO72] Length = 313 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 132/307 (42%), Positives = 197/307 (64%), Gaps = 2/307 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +E W ++ G + +S L EG+ + ++ +++DD + EE+ED L+ +DIGV + Sbjct: 3 ENEKGGWFSRMKAGLSKSSKNLSEGLVNVLVGGKQIDDELLEEVEDQLLVADIGVNATNR 62 Query: 66 IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 I++ L + D+ LY + + +L P P D + +P+VIL+VGVNGVGK Sbjct: 63 IIKNLTEQTARGDLIYSHALYKALKTELTDILTPKVAPLIIDTTKKPYVILMVGVNGVGK 122 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+K++ + G VMLAAGDTFR+AA +QL+IW +R + GSD+A++ ++ Sbjct: 123 TTTIGKLAKRLQNEGKSVMLAAGDTFRAAATEQLQIWGERNGIPVIAQGHGSDSASVIFD 182 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + A+AK +DVLI DTAGRL N + LM + K++RV+K+ D APH + VLDA TGQN Sbjct: 183 AMQSAKAKGIDVLIADTAGRLQNKTHLMNELEKVVRVMKKGDETAPHETMIVLDAGTGQN 242 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ QV++F TG+ +TK+DGTA+GG + I IP+ F+GVGEGI+DL+PF K Sbjct: 243 AINQVQVFSEAVNLTGISVTKLDGTAKGGVVFNIAQNTDIPIRFIGVGEGIDDLQPFKPK 302 Query: 305 DFSAVIT 311 DF + Sbjct: 303 DFVDALL 309 >gi|294669442|ref|ZP_06734519.1| signal recognition particle-docking protein FtsY [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308646|gb|EFE49889.1| signal recognition particle-docking protein FtsY [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 500 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 121/311 (38%), Positives = 194/311 (62%), Gaps = 2/311 (0%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + ++ +E+ W +L +G + + K+ + + + ++D+ + EELE +L+ SD+G+ Sbjct: 189 AAEEQPAETGGWTARLKQGLSKSRDKMAKSLAGVFGGGKIDEDLYEELETVLLTSDMGIE 248 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + +++E+ + K +S R L + E ++ +L PL KP + +P VI++ G+N Sbjct: 249 ATEHLMDEVRRRVSLKGLSDGRELRQALKEAVYDLLSPLEKPLEIPDNGQPFVIMMAGIN 308 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+K G V+LAAGDTFR+AA +QL+ W +R + S++ D+AA Sbjct: 309 GAGKTTSIGKLAKYFQSQGKSVILAAGDTFRAAAREQLQEWGERNGVTVI-SQVKGDSAA 367 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++A + A+A+K+D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA Sbjct: 368 VCFDAVEAAKARKIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKSMPDAPHEIIVVLDAN 427 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQNA+ QV F G TGLI+TK+DGTA+GG L + + IPV ++GVGE I+DL P Sbjct: 428 IGQNAVGQVAAFDDTLGVTGLIVTKLDGTAKGGVLAALASSRPIPVRYIGVGEKIDDLRP 487 Query: 301 FVAKDFSAVIT 311 F A+ F + Sbjct: 488 FDARAFVDALI 498 >gi|85713492|ref|ZP_01044482.1| cell division transporter substrate-binding protein FtsY [Nitrobacter sp. Nb-311A] gi|85699396|gb|EAQ37263.1| cell division transporter substrate-binding protein FtsY [Nitrobacter sp. Nb-311A] Length = 315 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 158/313 (50%), Positives = 219/313 (69%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 M++ SW R+L+ G TS L + D+++ R+LD + +++ED+L+R+D+G Sbjct: 1 MNDSTEDKPKQSWWRRLSGGLKRTSTSLGTAVADLVTKRKLDRAMLDDIEDVLLRADLGA 60 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 AVA++I E + RY K +S V V+ + K+L P+++P D + P VILVVGVN Sbjct: 61 AVAERIAEAVGEGRYDKAISADEVKAVVATEVEKVLAPVARPLVIDGTFTPFVILVVGVN 120 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+ K+S G KVM+AAGDTFR+AAI+QLK+W +RT + + E GSD+A+ Sbjct: 121 GSGKTTTIGKLAAKLSAEGRKVMMAAGDTFRAAAIEQLKVWGERTGSPVIAGEQGSDSAS 180 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LA+ A A+ +K DVL+IDTAGRL N + LM + KM+RV++R+D APH VL VLDAT Sbjct: 181 LAFNALTAARNEKRDVLLIDTAGRLQNKAELMNELEKMVRVIRRVDAAAPHVVLLVLDAT 240 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQNAL QVE FH AG TGL+MTK+DGTARGG L+ + HK+PV+F+GVGEG++DL P Sbjct: 241 VGQNALSQVEAFHRTAGVTGLVMTKLDGTARGGILVALAEKHKLPVHFIGVGEGVDDLAP 300 Query: 301 FVAKDFSAVITGC 313 F A+DF+ + G Sbjct: 301 FTARDFARAVAGI 313 >gi|75674514|ref|YP_316935.1| cell division transporter substrate-binding protein FtsY [Nitrobacter winogradskyi Nb-255] gi|74419384|gb|ABA03583.1| signal recognition particle-docking protein FtsY [Nitrobacter winogradskyi Nb-255] Length = 315 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 158/313 (50%), Positives = 218/313 (69%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 MS+ SW R+L+ G TS L + D+++ R+LD + +++ED+L+R+D+G Sbjct: 1 MSDSSEDQPKQSWWRRLSGGLKRTSASLGTAVADLVTKRKLDRAMLDDIEDVLLRADLGT 60 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 AVA++I E + RY K +S V V+ + K+L P+++P D + +P VILVVGVN Sbjct: 61 AVAERIAEAVGEGRYDKAISADEVKAVVATEVEKVLAPVARPLIIDETVKPFVILVVGVN 120 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+ K+S G KVM+AAGDTFR+AAIDQLK+W +RT + + GSD+A+ Sbjct: 121 GSGKTTTIGKLAAKLSAEGRKVMMAAGDTFRAAAIDQLKVWGERTGSPVIAGAQGSDSAS 180 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LA+ A +A+ + DVL+IDTAGRL N + LM + KM+RV++R+D APH VL VLDAT Sbjct: 181 LAFNALTEARNQNSDVLLIDTAGRLQNKAELMNELEKMVRVIRRVDSSAPHVVLLVLDAT 240 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQNAL QVE FH AG TGL+MTK+DGTARGG L+ + HK+PV+F+GVGEG++DL P Sbjct: 241 VGQNALSQVEAFHRTAGVTGLVMTKLDGTARGGILVALAEKHKLPVHFIGVGEGVDDLAP 300 Query: 301 FVAKDFSAVITGC 313 F A DF+ + G Sbjct: 301 FTAGDFARAVAGI 313 >gi|71065494|ref|YP_264221.1| signal recognition particle-docking protein FtsY [Psychrobacter arcticus 273-4] gi|71038479|gb|AAZ18787.1| signal recognition particle-docking protein FtsY [Psychrobacter arcticus 273-4] Length = 478 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 137/317 (43%), Positives = 199/317 (62%), Gaps = 2/317 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIG 59 + ++ S+ SW ++ G + + L EG+ I I + +DD + EE+ED L+ +DIG Sbjct: 160 LQEEQENSKKGSWFNRMKTGLSKSRKNLAEGMVGILIGGKEIDDELLEEVEDQLLVADIG 219 Query: 60 VAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118 V +I++ L + D+ LY + + +L P P D S +P VILVVG Sbjct: 220 VNATNRIIKSLTEQTDRGDLIYAHSLYKALQTELVDILTPKVAPLIIDTSKQPFVILVVG 279 Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178 VNGVGKTT IGKL+K++ G VMLAAGDTFR+AA +QL+IW +R + V GSD+ Sbjct: 280 VNGVGKTTTIGKLAKRLQGEGKSVMLAAGDTFRAAATEQLQIWGERNNIPVVAQGHGSDS 339 Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238 A++ ++A + A+AK +DVLI DTAGRL N + LMA + K++RV+++ D APH + VLD Sbjct: 340 ASVIFDAMQSAKAKNIDVLIADTAGRLQNKTHLMAELEKVVRVMRKADSSAPHEGMIVLD 399 Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298 A TGQNA+ QVE+F+ V TG+ +TK+DGTA+GG + I T +P+ ++GVGE I+DL Sbjct: 400 AGTGQNAINQVELFNKVVPLTGITITKLDGTAKGGVVFNIAETTDVPIRYIGVGESIDDL 459 Query: 299 EPFVAKDFSAVITGCLD 315 F K F A + D Sbjct: 460 RAFSPKQFVAALFETDD 476 >gi|91775086|ref|YP_544842.1| signal recognition particle-docking protein FtsY [Methylobacillus flagellatus KT] gi|91709073|gb|ABE49001.1| signal recognition particle-docking protein FtsY [Methylobacillus flagellatus KT] Length = 335 Score = 319 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 119/306 (38%), Positives = 188/306 (61%), Gaps = 3/306 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 SLSW +L + A T + + + + ++D+ V EELE +L+ SD+G+A Q + Sbjct: 31 EKPSLSWAERLKRSLAKTRSQWGQQLARLFGGGKIDENVYEELETILLTSDVGIAATQAL 90 Query: 67 VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 +E++ T+ +++S L + + + + ++L PL KP + + P VI++ GVNG GKT Sbjct: 91 LEQIRTRVKRQNLSDTTQLKEALKQSLLELLTPLEKPLDTTTAQ-PFVIMLAGVNGAGKT 149 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+ G V++AAGDTFR+AA +QL+ W +R + V E D AA+ ++A Sbjct: 150 TTIGKLANLFQAQGKSVLIAAGDTFRAAAREQLQAWGERNNVHVVAQE-SGDPAAVIFDA 208 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 A+A+ +D+++ DTAGRL LM I K+ RV+ + P APH VL VLD+ TGQNA Sbjct: 209 VNSAKARGIDIVLADTAGRLPTQLNLMEEIRKVQRVIDKALPGAPHEVLLVLDSNTGQNA 268 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + QV+ F G TGL+++K+DGTA+GG + I + +P+ ++G+GE I+DL PF A + Sbjct: 269 VTQVKAFDDALGVTGLVLSKLDGTAKGGVIAAIAQSRPVPIRYIGIGESIDDLRPFKASE 328 Query: 306 FSAVIT 311 F + Sbjct: 329 FIDALF 334 >gi|326564152|gb|EGE14388.1| signal recognition particle-docking protein FtsY [Moraxella catarrhalis 12P80B1] Length = 313 Score = 319 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 132/307 (42%), Positives = 197/307 (64%), Gaps = 2/307 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +E W ++ G + +S L EG+ + ++ +++DD + EE+ED L+ +DIGV + Sbjct: 3 ENEKGGWFSRMKAGLSKSSKNLSEGLVNVLVGGKQIDDELLEEVEDQLLVADIGVNATNR 62 Query: 66 IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 I++ L + D+ LY + + +L P P D + +P+VIL+VGVNGVGK Sbjct: 63 IIKNLTEQAARGDLIYSHALYKALKTELTDILTPKVAPLIIDTTKKPYVILMVGVNGVGK 122 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+K++ + G VMLAAGDTFR+AA +QL+IW +R + GSD+A++ ++ Sbjct: 123 TTTIGKLAKRLQNEGKSVMLAAGDTFRAAATEQLQIWGERNGIAVIAQGHGSDSASVIFD 182 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + A+AK +DVLI DTAGRL N + LM + K++RV+K+ D APH + VLDA TGQN Sbjct: 183 AMQSAKAKGIDVLIADTAGRLQNKTHLMNELEKVVRVMKKGDETAPHETMIVLDAGTGQN 242 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ QV++F TG+ +TK+DGTA+GG + I IP+ F+GVGEGI+DL+PF K Sbjct: 243 AINQVQVFSEAVNLTGISVTKLDGTAKGGVVFNIAQNTDIPIRFIGVGEGIDDLQPFKPK 302 Query: 305 DFSAVIT 311 DF + Sbjct: 303 DFVDALL 309 >gi|146337532|ref|YP_001202580.1| cell division transporter substrate-binding protein FtsY [Bradyrhizobium sp. ORS278] gi|146190338|emb|CAL74334.1| Cell division transporter substrate-binding protein FtsY (Signal recognition particle receptor) [Bradyrhizobium sp. ORS278] Length = 315 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 155/315 (49%), Positives = 218/315 (69%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 M++ + SW R+L+ G TS L + D+++ R+LD + +++ED+L+R+D+G Sbjct: 1 MNDTTSETPKRSWWRRLSDGLKRTSGALGTAVADLVTKRKLDRAMLDDIEDVLLRADLGT 60 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 VA +I E + RY K +S V V+ + K+L P++KP + H+P VILVVGVN Sbjct: 61 QVAARIAEAVGAGRYDKAISADEVKAVVATEVEKVLSPVAKPLTIEPGHKPFVILVVGVN 120 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL++K + G VMLAAGDTFR+AAI+QLK+W +RT A + GSD+A+ Sbjct: 121 GSGKTTTIGKLAQKFASEGKHVMLAAGDTFRAAAIEQLKVWGERTKAPVIAGAQGSDSAS 180 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LA+ A A+ + D+L+IDTAGRL N + LM + K++RV++++D APH+VL VLDAT Sbjct: 181 LAFNAITAAKEQGRDILLIDTAGRLQNKAELMNELEKVVRVIRKVDASAPHAVLLVLDAT 240 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQNAL QVE FH AG TGL+MTK+DGTARGG L+ + K+PV+F+GVGEG++DL+P Sbjct: 241 VGQNALSQVEAFHRTAGVTGLVMTKLDGTARGGILVALSEKFKLPVHFIGVGEGVDDLQP 300 Query: 301 FVAKDFSAVITGCLD 315 F AKDF+ I G D Sbjct: 301 FAAKDFARAIAGIED 315 >gi|254470691|ref|ZP_05084094.1| signal recognition particle-docking protein FtsY [Pseudovibrio sp. JE062] gi|211959833|gb|EEA95030.1| signal recognition particle-docking protein FtsY [Pseudovibrio sp. JE062] Length = 517 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 158/306 (51%), Positives = 217/306 (70%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 SW ++L G + +S L EGI+ I + R+LD EELED+LI++D+G+ A I + Sbjct: 209 KKSWFQRLKAGLSRSSNALTEGISSIFTKRKLDADTLEELEDILIQADLGIDTAIAITDR 268 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + RY K++S + V +++ I +L P++KP + + H+PH++L+VGVNG GKTT IG Sbjct: 269 VSDGRYDKEISGEEVRAILADEIESVLEPVAKPLDLNIGHKPHIVLMVGVNGTGKTTTIG 328 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KLS + + G KVMLAAGDTFR+AA++QLK+W RT A+ V + G+DAA LAY+A A Sbjct: 329 KLSSLLHEQGKKVMLAAGDTFRAAAVEQLKVWGQRTGAEVVARDTGADAAGLAYDAVDAA 388 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + DVL+IDTAGRL N + LM + K+IRV+++ P APH+ L LDATTGQNAL QV Sbjct: 389 LSNDTDVLLIDTAGRLQNKAELMDELEKIIRVIRKRVPDAPHTTLLTLDATTGQNALSQV 448 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E+F VAG TGL+MTK+DGTARGG L+ I + +PV+F+GVGEG++DLEPF AKDF+A Sbjct: 449 EIFGKVAGVTGLVMTKLDGTARGGILVAIARKYGLPVHFIGVGEGVDDLEPFSAKDFAAA 508 Query: 310 ITGCLD 315 I G D Sbjct: 509 IAGKDD 514 >gi|115522346|ref|YP_779257.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris BisA53] gi|115516293|gb|ABJ04277.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris BisA53] Length = 316 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 153/311 (49%), Positives = 213/311 (68%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62 N S+ SW R+L+ G TS + + + +S R+LD + EE+ED+L+R+D+G V Sbjct: 2 NDTSESKKPSWWRRLSSGLKRTSSSIGTALAEFVSKRKLDRAMLEEIEDVLLRADLGTEV 61 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + +I + RY K +S V V+ + K+L P+++P D + +P VIL+VGVNG Sbjct: 62 SARIAAAVGEGRYDKMISASDVKEIVAAEVEKVLAPVARPLVIDGAKKPFVILMVGVNGS 121 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+ ++S G KVMLAAGDTFR+AAI+QLK+W +RT + V GSD+A+LA Sbjct: 122 GKTTTIGKLAARLSGEGRKVMLAAGDTFRAAAIEQLKVWGERTGSPVVAGAQGSDSASLA 181 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 + A QA+ + DVL+IDTAGRL N + LM + K++RV++++D APH+VL VLDAT G Sbjct: 182 FNALTQAKDEGRDVLLIDTAGRLQNRTELMNELEKVVRVIRKVDSSAPHAVLLVLDATVG 241 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL QVE F AG TGL+MTK+DGTARGG L+ + HK+PV+F+GVGE ++DL PF Sbjct: 242 QNALSQVEAFSRTAGVTGLVMTKLDGTARGGILVALAEKHKLPVHFIGVGESVDDLAPFT 301 Query: 303 AKDFSAVITGC 313 A DF+ I G Sbjct: 302 APDFAKAIAGI 312 >gi|37678296|ref|NP_932905.1| signal recognition particle GTPase [Vibrio vulnificus YJ016] gi|37197035|dbj|BAC92876.1| signal recognition particle GTPase [Vibrio vulnificus YJ016] Length = 437 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 129/309 (41%), Positives = 199/309 (64%), Gaps = 1/309 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ Sbjct: 125 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLVADVGMDTT 184 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+E L K +D+ LY + E + ++L + +P D S P+VIL+VGVNGV Sbjct: 185 LKIIENLTEKASRRDLKDGEALYGLLKEEMAEILSKVEQPLQVDSSKTPYVILMVGVNGV 244 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ + G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 245 GKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 304 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TG Sbjct: 305 YDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 364 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF Sbjct: 365 QNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFNIPIRYIGVGEGIEDLRPFE 424 Query: 303 AKDFSAVIT 311 ++F + Sbjct: 425 TQEFIDALF 433 >gi|39933286|ref|NP_945562.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris CGA009] gi|192288638|ref|YP_001989243.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris TIE-1] gi|39652911|emb|CAE25653.1| putative cell division protein FtsY [Rhodopseudomonas palustris CGA009] gi|192282387|gb|ACE98767.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris TIE-1] Length = 315 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 157/310 (50%), Positives = 212/310 (68%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62 + + SW R+L+ G TS + +++ +S R+LD + EE+ED+L+R+D+G V Sbjct: 2 SDTPENSKQSWWRRLSSGLKRTSSSIGTALSEFVSKRKLDRAMLEEIEDVLLRADLGTEV 61 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 A +I + + RY K +S V V+ + K+L P+++P D ++P VIL+VGVNG Sbjct: 62 AARIAKAVGEGRYDKMISASDVKEIVAAEVEKVLAPVAQPLEVDAGNKPFVILMVGVNGS 121 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKLS + + G KVMLAAGDTFR+AAIDQLK+W DRT V GSDAA LA Sbjct: 122 GKTTTIGKLSARFASEGHKVMLAAGDTFRAAAIDQLKVWGDRTGTPVVAGAQGSDAAGLA 181 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 + A A+ + DVL+IDTAGRL N + LM+ + K++RV+K++D APH+VL VLDAT G Sbjct: 182 FNALTAAKEQGRDVLLIDTAGRLQNRTELMSELEKVVRVIKKVDATAPHAVLLVLDATVG 241 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL QVE F AG TGL+MTK+DGTARGG L+ I HK+PV+F+GVGEG+ DL PF Sbjct: 242 QNALSQVEAFTKTAGVTGLVMTKLDGTARGGILVAIAEKHKLPVHFIGVGEGVEDLAPFT 301 Query: 303 AKDFSAVITG 312 A+DF+ I G Sbjct: 302 ARDFAKAIAG 311 >gi|316931820|ref|YP_004106802.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris DX-1] gi|315599534|gb|ADU42069.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris DX-1] Length = 315 Score = 319 bits (817), Expect = 4e-85, Method: Composition-based stats. Identities = 155/310 (50%), Positives = 211/310 (68%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62 + + SW R+L+ G TS + +++ +S R+LD + EE+ED+L+R+D+G V Sbjct: 2 SDTPENSKQSWWRRLSSGLKRTSSSIGTALSEFVSKRKLDRAMLEEIEDVLLRADLGAEV 61 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 A +I + RY K +S V V+ + K+L P+++P D +P V+L+VGVNG Sbjct: 62 ASRIASAVGEGRYDKMISASDVKEIVAAEVEKVLAPVAQPLVVDAGKKPFVVLMVGVNGS 121 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKLS + + G KVMLAAGDTFR+AAIDQLK+W +RT V GSDAA LA Sbjct: 122 GKTTTIGKLSARFASEGHKVMLAAGDTFRAAAIDQLKVWGERTGTPVVAGAQGSDAAGLA 181 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 + A A+ + DVL+IDTAGRL N + LM+ + K++RV+K++D APH+VL VLDAT G Sbjct: 182 FNALTAAKEQGRDVLLIDTAGRLQNRTELMSELEKVVRVIKKVDATAPHAVLLVLDATVG 241 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL QVE F AG TGL+MTK+DGTARGG L+ I HK+PV+F+GVGEG++DL PF Sbjct: 242 QNALSQVEAFTKTAGVTGLVMTKLDGTARGGILVAIAEKHKLPVHFIGVGEGVDDLSPFT 301 Query: 303 AKDFSAVITG 312 A+DF+ I G Sbjct: 302 ARDFAKAIAG 311 >gi|323137224|ref|ZP_08072303.1| signal recognition particle-docking protein FtsY [Methylocystis sp. ATCC 49242] gi|322397582|gb|EFY00105.1| signal recognition particle-docking protein FtsY [Methylocystis sp. ATCC 49242] Length = 353 Score = 319 bits (817), Expect = 4e-85, Method: Composition-based stats. Identities = 150/310 (48%), Positives = 213/310 (68%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 + SW +LT G A TS + +G+ DI + R+LD EELED+L+R+D+GV A Sbjct: 32 EAPEEPKRSWWSRLTGGLARTSQAISQGVADIFTKRKLDALTLEELEDVLLRADLGVGAA 91 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 +I + + RY KD+ V ++ + +L P++ PF D S +P ++LVVGVNG G Sbjct: 92 MRITKAVGKARYEKDIEPDEVRAILAREVEAVLEPVAVPFEIDESKKPFIVLVVGVNGSG 151 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT I KL+ K + G KV+LAAGDTFR+AA++QL+IW R A+ V G+DAA LA+ Sbjct: 152 KTTTIAKLASKWTGEGKKVVLAAGDTFRAAAVEQLRIWGARLDAEVVAGNEGADAAGLAF 211 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +A K+A D++++DTAGRL N + LMA + K++RV+K+ +P APH+VL VLDAT GQ Sbjct: 212 DAIKRAGESGADIMLMDTAGRLQNRAELMAELEKIVRVMKKAEPEAPHAVLLVLDATVGQ 271 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NA++QVE+F +AG TGL+MTK+DGTARGG L+ I + +P++F+GVGEG +DLEPF A Sbjct: 272 NAMQQVEVFQRMAGVTGLVMTKLDGTARGGILVAIAEAYGLPIHFIGVGEGQDDLEPFTA 331 Query: 304 KDFSAVITGC 313 +DF+ I G Sbjct: 332 RDFARAIAGL 341 >gi|304311581|ref|YP_003811179.1| Cell division protein, SRP docking protein [gamma proteobacterium HdN1] gi|301797314|emb|CBL45534.1| Cell division protein, SRP docking protein [gamma proteobacterium HdN1] Length = 416 Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 128/306 (41%), Positives = 192/306 (62%), Gaps = 4/306 (1%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVE 68 S+ ++ +G + T E + +++ ++ +D + EE+E L+ +D+GV+ Q+IV Sbjct: 108 KESFFSRVKRGLSRTRSGFTEAMASLLAGKKAIDADLLEEIETQLLMADVGVSATQRIVT 167 Query: 69 ELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKT 125 L K +++ LY + + + +L ++P+ +P VIL+VGVNGVGKT Sbjct: 168 ALTQKVSRRELVDSDALYHALQQELAALLSGHAEPWQLGKTAEGKPRVILMVGVNGVGKT 227 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K++ G +VMLAAGDTFR+AA++QL++W R V G+D+A++ ++A Sbjct: 228 TTIGKLAKRLQIEGKQVMLAAGDTFRAAAVEQLQVWGQRNEIAVVAQHTGADSASVIFDA 287 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + A AKKVDVLI DTAGRLH S LM + K+ RV+++LDP APH VL VLDA TGQNA Sbjct: 288 LQSATAKKVDVLIADTAGRLHTKSNLMEELKKVKRVMQKLDPQAPHEVLLVLDAGTGQNA 347 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L Q F+ G TG+++TK+DGTA+GG + I IP+ +GVGE I+DL PF + Sbjct: 348 LSQATQFNEAVGVTGIVLTKLDGTAKGGIVFAIAEKTGIPIRLIGVGETIDDLRPFEPQQ 407 Query: 306 FSAVIT 311 F + Sbjct: 408 FVKALF 413 >gi|163757350|ref|ZP_02164439.1| putative cell division protein [Hoeflea phototrophica DFL-43] gi|162284852|gb|EDQ35134.1| putative cell division protein [Hoeflea phototrophica DFL-43] Length = 529 Score = 318 bits (816), Expect = 5e-85, Method: Composition-based stats. Identities = 172/306 (56%), Positives = 225/306 (73%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 W ++L +G + TS +L IT I + R+LD+ EELED+L+++D+GV A +I Sbjct: 221 PEPQGGWWQRLRQGLSRTSGQLTGQITGIFTKRKLDEETLEELEDVLLQADLGVETALRI 280 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 + L + RY KD+S V +++ I ++L P++KP D SH+PHVILVVGVNG GKTT Sbjct: 281 TDALASGRYGKDISPAEVQKVMADEIARVLEPVAKPLELDLSHKPHVILVVGVNGTGKTT 340 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+ K+ GLKV LAAGDTFR+AAI+QLKIW DRT + V +++G+DAA LAYEAF Sbjct: 341 TIGKLAAKLHSGGLKVTLAAGDTFRAAAIEQLKIWGDRTGSKVVSTKLGADAAGLAYEAF 400 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+A DVLIIDTAGRL N + LM + K++RV+ +LDP APH+VLQ LDATTGQNAL Sbjct: 401 ETARADGADVLIIDTAGRLQNRTELMDELAKVVRVIGKLDPDAPHTVLQTLDATTGQNAL 460 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QVE+F VAG GL+MTK+DGTARGG L+ I HK+PVYF+GVGEG++DLEPF A DF Sbjct: 461 NQVEIFKNVAGVNGLVMTKLDGTARGGILVAIAAKHKLPVYFIGVGEGVDDLEPFEAADF 520 Query: 307 SAVITG 312 ++ I G Sbjct: 521 ASAIAG 526 >gi|86747488|ref|YP_483984.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris HaA2] gi|86570516|gb|ABD05073.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris HaA2] Length = 315 Score = 318 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 154/310 (49%), Positives = 213/310 (68%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62 + + SW R+L+ G TS + +++ IS R+LD + +E+ED+L+R+D+G V Sbjct: 2 SDTPENAKPSWWRRLSSGLKRTSSSIGTALSEFISKRKLDRAMLDEIEDVLLRADLGTEV 61 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 A +I + + RY K +S V V+ + K+L P++KP D + +P V+LVVGVNG Sbjct: 62 ATRISDAVGEGRYDKMISAGDVKEIVAAEVEKVLAPVAKPLVIDRAKKPFVVLVVGVNGS 121 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKLS + + G KVM+AAGDTFR+AAI+QLK+W +RT + GSD+A+LA Sbjct: 122 GKTTTIGKLSARYAAEGHKVMMAAGDTFRAAAIEQLKVWGERTGTPVIAGAQGSDSASLA 181 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 + A A+ + DVL+IDTAGRL N + LM +GK++RV+K++D APH+VL VLDAT G Sbjct: 182 FNALTTAKEQARDVLLIDTAGRLQNRTELMNELGKVVRVIKKVDDTAPHAVLLVLDATVG 241 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL QVE F AG TGL+MTK+DGTARGG L+ I HK+PV+F+GVGEG+ DL PF Sbjct: 242 QNALSQVEAFTKTAGVTGLVMTKLDGTARGGILVAIAEKHKLPVHFIGVGEGVEDLAPFT 301 Query: 303 AKDFSAVITG 312 A+DF+ I G Sbjct: 302 ARDFAQAIAG 311 >gi|296113141|ref|YP_003627079.1| signal recognition particle-docking protein FtsY [Moraxella catarrhalis RH4] gi|295920835|gb|ADG61186.1| signal recognition particle-docking protein FtsY [Moraxella catarrhalis RH4] gi|326560515|gb|EGE10897.1| signal recognition particle-docking protein FtsY [Moraxella catarrhalis 7169] gi|326565755|gb|EGE15917.1| signal recognition particle-docking protein FtsY [Moraxella catarrhalis BC1] gi|326570406|gb|EGE20446.1| signal recognition particle-docking protein FtsY [Moraxella catarrhalis BC8] gi|326571092|gb|EGE21116.1| signal recognition particle-docking protein FtsY [Moraxella catarrhalis BC7] gi|326577186|gb|EGE27080.1| signal recognition particle-docking protein FtsY [Moraxella catarrhalis O35E] Length = 313 Score = 318 bits (816), Expect = 7e-85, Method: Composition-based stats. Identities = 132/307 (42%), Positives = 197/307 (64%), Gaps = 2/307 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 +E W ++ G + +S L EG+ + ++ +++DD + EE+ED L+ +DIGV + Sbjct: 3 ENEKGGWFSRMKAGLSKSSKNLSEGLVNVLVGGKQIDDELLEEVEDQLLVADIGVNATNR 62 Query: 66 IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124 I++ L + D+ LY + + +L P P D + +P+VIL+VGVNGVGK Sbjct: 63 IIKNLTEQTARGDLIYSHALYKALKTELTDILTPKVAPLIIDTTKKPYVILMVGVNGVGK 122 Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 TT IGKL+K++ + G VMLAAGDTFR+AA +QL+IW +R + GSD+A++ ++ Sbjct: 123 TTTIGKLAKRLQNEGKSVMLAAGDTFRAAATEQLQIWGERNGIAVIAQGHGSDSASVIFD 182 Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 A + A+AK +DVLI DTAGRL N + LM + K++RV+K+ D APH + VLDA TGQN Sbjct: 183 AMQSAKAKGIDVLIADTAGRLQNKTHLMNELEKVVRVMKKGDETAPHETMIVLDAGTGQN 242 Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 A+ QV++F TG+ +TK+DGTA+GG + I IP+ F+GVGEGI+DL+PF K Sbjct: 243 AINQVQVFSEAVNLTGISVTKLDGTAKGGVVFNIAQNTDIPIRFIGVGEGIDDLQPFKPK 302 Query: 305 DFSAVIT 311 DF + Sbjct: 303 DFVDALL 309 >gi|144898020|emb|CAM74884.1| Signal recognition particle GTPase [Magnetospirillum gryphiswaldense MSR-1] Length = 357 Score = 318 bits (815), Expect = 7e-85, Method: Composition-based stats. Identities = 139/312 (44%), Positives = 201/312 (64%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + +A SW+ +L G +S KL +G+ D+ + R+LDD E+LEDLLI +D+GV Sbjct: 45 PAEILAEAPQSWLSRLKSGLTKSSSKLTQGLGDLFTKRKLDDEALEDLEDLLITTDLGVG 104 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 A ++ + L R+ +DV + + ++E + ++L P++KP RPHV+LVVGVNG Sbjct: 105 TAARVTKRLAKTRFGQDVGAEEIKQVLAEEVAQILAPVAKPLQPACVARPHVVLVVGVNG 164 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGK++K D G +V LAAGDTFR+AA++QLK+W +RT E G+DAA L Sbjct: 165 SGKTTTIGKMAKHFKDQGKQVALAAGDTFRAAAVEQLKVWGERTQCPVFSRETGADAAGL 224 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 ++A ++ + D+L +DTAGRL N + LM + K++RV+K+ D APH VL VLDAT Sbjct: 225 VFDAMAESAKRGDDLLFVDTAGRLQNKADLMEELRKVVRVIKKQDETAPHDVLLVLDATV 284 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA QVE+F + TGL++TK+DGTARGG L+ + +PV+ +GVGE DL PF Sbjct: 285 GQNAHSQVEVFKDMVDVTGLVLTKLDGTARGGVLVALAEKFALPVHAIGVGEKAEDLRPF 344 Query: 302 VAKDFSAVITGC 313 A F+ + G Sbjct: 345 DANAFARSLVGL 356 >gi|299133082|ref|ZP_07026277.1| signal recognition particle-docking protein FtsY [Afipia sp. 1NLS2] gi|298593219|gb|EFI53419.1| signal recognition particle-docking protein FtsY [Afipia sp. 1NLS2] Length = 318 Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats. Identities = 160/312 (51%), Positives = 217/312 (69%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 M++ SW ++L+ G TS + +TD++S R+LD + E +ED+L+R+D+G Sbjct: 1 MTDTPQDKPKQSWWQRLSAGLKRTSGSIGGALTDLVSKRKLDRAMLEGIEDVLLRADLGT 60 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 VA +I ++ RY KDVS Q V V+ + K+L P++KP D S +P VILVVGVN Sbjct: 61 EVAARIAAKVGEGRYDKDVSAQDVQEIVAAEVEKVLAPVAKPLVIDESQKPFVILVVGVN 120 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+ K++ G +VMLAAGDTFR+AAI+QLK+W +RT V GSD+A+ Sbjct: 121 GSGKTTTIGKLAAKLTAEGRRVMLAAGDTFRAAAIEQLKVWGERTGVPVVARAHGSDSAS 180 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LA++A +A+ DVL+IDTAGRL N + LM + K+ RV++++D APH+VL VLDAT Sbjct: 181 LAFDAASEAKTDNRDVLLIDTAGRLQNKAELMVELEKVARVIRKVDASAPHAVLLVLDAT 240 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQNAL QVE F AG TGL+MTK+DGTARGG L+ I T+K+PV+F+GVGEGI+DL P Sbjct: 241 VGQNALSQVEAFRKTAGVTGLVMTKLDGTARGGILVAISETYKLPVHFIGVGEGIDDLAP 300 Query: 301 FVAKDFSAVITG 312 F A DF+ I G Sbjct: 301 FTAHDFALAIAG 312 >gi|49474822|ref|YP_032864.1| cell division protein ftsY [Bartonella quintana str. Toulouse] gi|49240326|emb|CAF26808.1| Cell division protein ftsY [Bartonella quintana str. Toulouse] Length = 407 Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats. Identities = 156/312 (50%), Positives = 219/312 (70%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 V + +W R+L KG A +S +L E I ++ +LD ++LED+LI++D+GV Sbjct: 93 FPMSSVEQKKTAWFRRLQKGLALSSQRLSESIGELFVKEKLDKDTLQKLEDILIQADLGV 152 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 A I + + + RY K +S + ++ I K+L P++ P D +H+PHVIL+VGVN Sbjct: 153 ETAAHITDTIASSRYEKSLSPDNIHTIMANEIEKILEPVAIPLELDLNHKPHVILLVGVN 212 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+ K++ GLKVMLAA D FR+AAI+QL IW++R A V +++G+DAA+ Sbjct: 213 GTGKTTTIGKLAAKLTKGGLKVMLAACDMFRAAAIEQLHIWSERIGAPVVSTKLGADAAS 272 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LA++A+++A+ DVLIIDTAGRL N + LM + K+IRVL + +PHAPH++LQ LDAT Sbjct: 273 LAFDAYEKAKKANSDVLIIDTAGRLQNKTELMDELAKIIRVLGKHNPHAPHTILQTLDAT 332 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNAL QVE+F +AG GL+MTK+DGTARGG L+ I +K+PVYF+G+GE I DL+P Sbjct: 333 TGQNALNQVEIFRDIAGVNGLVMTKLDGTARGGILVAIAAKYKLPVYFIGIGEDIEDLQP 392 Query: 301 FVAKDFSAVITG 312 F A DF+ I G Sbjct: 393 FSASDFAKTIAG 404 >gi|94499827|ref|ZP_01306363.1| signal recognition particle-docking protein FtsY [Oceanobacter sp. RED65] gi|94428028|gb|EAT13002.1| signal recognition particle-docking protein FtsY [Oceanobacter sp. RED65] Length = 359 Score = 318 bits (815), Expect = 9e-85, Method: Composition-based stats. Identities = 123/303 (40%), Positives = 190/303 (62%), Gaps = 2/303 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + ++ G + T L EG+ D++ + +D+ + E++E L+ +DIG+ Q I+++ Sbjct: 53 KGFFARIKAGLSRTRSGLSEGLGDLLLGKKEIDEDLLEDIETQLLMADIGINATQAIIDD 112 Query: 70 LLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L + K++ L + + + +L P P S +P VIL+VGVNGVGKTT I Sbjct: 113 LTERSSRKELKDSEALLEALKQHLKDILEPCHAPLEIPQSDKPFVILMVGVNGVGKTTTI 172 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GK++K+ G VMLAAGDTFR+AA++QL+ W +R V G+D+A++ Y+A + Sbjct: 173 GKMAKRFQSQGKSVMLAAGDTFRAAAVEQLQTWGERNKVPVVAQHTGADSASVIYDAVQS 232 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 AQ+K VDV+I DTAGRL N + LM + K++RV+++LD APH V+ VLDA TGQNAL Q Sbjct: 233 AQSKGVDVVIADTAGRLQNKANLMQELEKVVRVMRKLDDTAPHEVMLVLDAGTGQNALSQ 292 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 ++F G + L ++K+DGTA+GG + I ++PV F+GVGE I+DL PF ++F Sbjct: 293 AKIFQEAVGVSSLTLSKLDGTAKGGVIFAIAKELQLPVRFIGVGEQIDDLRPFNHEEFIE 352 Query: 309 VIT 311 + Sbjct: 353 ALF 355 >gi|92116024|ref|YP_575753.1| signal recognition particle-docking protein FtsY [Nitrobacter hamburgensis X14] gi|91798918|gb|ABE61293.1| signal recognition particle-docking protein FtsY [Nitrobacter hamburgensis X14] Length = 315 Score = 317 bits (814), Expect = 9e-85, Method: Composition-based stats. Identities = 158/313 (50%), Positives = 217/313 (69%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 MS+ SW R+L+ G TS L + D+++ R+LD + +++ED+L+R+D+G Sbjct: 1 MSDSTDDKPKQSWWRRLSGGLKRTSSSLGTAVADLVTKRKLDRAMLDDIEDVLLRADLGT 60 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 AVA++I + RY K +S V V+ + K+L ++KP D +H+P VILVVGVN Sbjct: 61 AVAERIAAAVGEGRYDKAISADEVKAVVATEVEKVLAAVAKPLVVDETHKPFVILVVGVN 120 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+ K+S G KVM+AAGDTFR+AAI+QL++W +RT + V GSDAA+ Sbjct: 121 GSGKTTTIGKLAAKLSAEGRKVMMAAGDTFRAAAIEQLQVWGERTGSPVVAGAQGSDAAS 180 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LA+ A A+ + DVL+IDTAGRL N + LM + K++RV++R+D APH+VL VLDAT Sbjct: 181 LAFNALTAARDDRRDVLLIDTAGRLQNKAELMNELEKVVRVIRRVDAAAPHAVLLVLDAT 240 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQNAL QVE FH AG TGL+MTK+DGTARGG L+ + HK+PV+F+GVGEG++DL P Sbjct: 241 VGQNALSQVEAFHRTAGVTGLVMTKLDGTARGGILVALAEKHKLPVHFIGVGEGVDDLAP 300 Query: 301 FVAKDFSAVITGC 313 F A DF+ I G Sbjct: 301 FTAHDFAKAIAGI 313 >gi|293393950|ref|ZP_06638256.1| cell division protein FtsY [Serratia odorifera DSM 4582] gi|291423510|gb|EFE96733.1| cell division protein FtsY [Serratia odorifera DSM 4582] Length = 608 Score = 317 bits (814), Expect = 9e-85, Method: Composition-based stats. Identities = 129/316 (40%), Positives = 196/316 (62%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 ++ ++ + +L + T L G + +++DD + EELE+ L+ +D+GV Sbjct: 294 VTQEQERPSKEGFFARLKRSLIKTKQNLGSGFIGLFRGKKIDDDLFEELEEQLLIADVGV 353 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +KI+E L K + LY + E + ++L + +P + P+VIL+VGV Sbjct: 354 ETTRKIIESLTLHASRKQLKDAEALYGKLKEEMSEILAKVDQPLDVS-GKTPYVILMVGV 412 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W +R V G+D+A Sbjct: 413 NGVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNRIPVVAQHTGADSA 472 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+A+ VDVLI DTAGRL N + LM + K++RV+K+LD HAPH V+ LDA Sbjct: 473 SVIFDAVQAAKARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEHAPHEVMLTLDA 532 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL Sbjct: 533 STGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLR 592 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + D Sbjct: 593 PFKADDFIEALFARED 608 >gi|49476311|ref|YP_034352.1| cell division protein ftsY [Bartonella henselae str. Houston-1] gi|49239119|emb|CAF28423.1| Cell division protein ftsY [Bartonella henselae str. Houston-1] Length = 416 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 157/312 (50%), Positives = 220/312 (70%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 + V E +W +L KG A +S +L + I ++ +LD +ELED+LI++D+GV Sbjct: 102 LPVSSVEQEKRAWFGRLKKGLALSSQRLSKSIGEVFVKEKLDKDKLQELEDILIQADLGV 161 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 A I + L + RY K++S V ++ I K+L P++ P D +H+PHVIL+VGVN Sbjct: 162 ETATHITDTLASSRYKKNLSPDDVHSIIANEIEKVLKPVAIPLELDLNHKPHVILLVGVN 221 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+ K++ GLKVMLAAGDTFR+AAI+QL IW +R A + +++G+DAA+ Sbjct: 222 GTGKTTTIGKLAAKLTKGGLKVMLAAGDTFRAAAIEQLHIWGERIGAPVISTKLGADAAS 281 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LA++A+++A+ DVLIIDTAGRL N + LM + K+IRVL + +P APH++LQ LDAT Sbjct: 282 LAFDAYEKAKKANSDVLIIDTAGRLQNKTELMDELAKIIRVLGKHNPQAPHTILQTLDAT 341 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNAL QV++F +AG GL+MTK+DGTARGG L+ I +K+PVYF+G+GE I DL+P Sbjct: 342 TGQNALNQVDIFRDIAGVNGLVMTKLDGTARGGILVAIAAKYKLPVYFIGIGENIEDLQP 401 Query: 301 FVAKDFSAVITG 312 F A DF+ I G Sbjct: 402 FSASDFAKTIAG 413 >gi|304392647|ref|ZP_07374587.1| cell division protein FtsY [Ahrensia sp. R2A130] gi|303295277|gb|EFL89637.1| cell division protein FtsY [Ahrensia sp. R2A130] Length = 585 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 150/302 (49%), Positives = 210/302 (69%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 +W ++ G + +S +L + + + ++LD+ E+LED+L+++D+GV A I + L Sbjct: 278 TWFARMRSGLSRSSNQLTSNVAAVFTKKKLDEETLEQLEDVLLQADLGVETAVAITDALA 337 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 +R KD++ V ++ I K L P++ D H PHVILVVGVNG GKTT IGKL Sbjct: 338 DQRMGKDITDLEVREFMAAEIEKTLDPVAAELELDLEHTPHVILVVGVNGSGKTTTIGKL 397 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 S+K+ DAG +L AGDTFR+AAI+QLKIW DRT + ++G+D+A LAY+A+ +A Sbjct: 398 SQKLYDAGFSTLLVAGDTFRAAAIEQLKIWGDRTQSPVAFRDLGADSAGLAYDAYAKALD 457 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 + DV+++DTAGRL N + LM + K+IRVLK+ DP APH+VL LDATTGQNAL QVE+ Sbjct: 458 EGQDVMLMDTAGRLQNKTELMDELRKIIRVLKKQDPTAPHTVLLTLDATTGQNALSQVEI 517 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F VAG GL+MTK+DGTARGG ++ + HK+PVYF+GVGE ++DLEPF A+DF+ I Sbjct: 518 FKEVAGVNGLVMTKLDGTARGGIMVSLAAKHKLPVYFIGVGEQVDDLEPFEARDFARSIA 577 Query: 312 GC 313 G Sbjct: 578 GL 579 >gi|91974997|ref|YP_567656.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris BisB5] gi|91681453|gb|ABE37755.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris BisB5] Length = 315 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 153/310 (49%), Positives = 213/310 (68%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62 + ++ SW R+L+ G TS + +++ IS R+LD + +E+ED+L+R+D+G V Sbjct: 2 SDTPETQKPSWWRRLSSGLKRTSSSIGTALSEFISKRKLDRAMLDEIEDVLLRADLGTEV 61 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 A +I + + RY K +S V V+ + K+L P++KP D + +P V+LVVGVNG Sbjct: 62 ASRISDAVGEGRYDKMISASDVKEIVASEVEKVLAPVAKPLVIDDAKKPFVVLVVGVNGS 121 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKLS + + G KVM+AAGDTFR+AAI+QLK+W +RT + GSD+A+LA Sbjct: 122 GKTTTIGKLSARFAAEGRKVMMAAGDTFRAAAIEQLKVWGERTGTPVIAGAQGSDSASLA 181 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 + A A+ + DVL+IDTAGRL N LM+ + K++RV+K++D APH+VL VLDAT G Sbjct: 182 FNALTAAKEQGRDVLLIDTAGRLQNRKELMSELEKVVRVIKKVDDTAPHAVLLVLDATVG 241 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL QVE F AG TGL+MTK+DGTARGG L+ I HK+PV+F+GVGEG+ DL PF Sbjct: 242 QNALSQVEAFTRTAGVTGLVMTKLDGTARGGILVAIAEKHKLPVHFIGVGEGVEDLSPFT 301 Query: 303 AKDFSAVITG 312 A+DF+ I G Sbjct: 302 ARDFAQAIAG 311 >gi|119473191|ref|ZP_01614888.1| Cell division transporter substrate-binding protein FtsY [Alteromonadales bacterium TW-7] gi|119444555|gb|EAW25870.1| Cell division transporter substrate-binding protein FtsY [Alteromonadales bacterium TW-7] Length = 750 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 126/301 (41%), Positives = 191/301 (63%), Gaps = 1/301 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L KG T + + G + I S +++DD + EELE L+ +D+GV K+++ L Sbjct: 443 GFFSRLKKGLLKTRVNIGAGFSSIFSGKKIDDDLFEELETQLLTADLGVDTTMKLIDRLT 502 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + LY++ + + ML +P +P VIL+VGVNGVGKTT IGK Sbjct: 503 DGANRKQLKDGDALYELMKQEMAAMLKTAEQPLTIPAEKKPFVILMVGVNGVGKTTTIGK 562 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K+ + G VMLAAGDTFR+AA++QL++W +R S + G+D+A++ ++AF+ A+ Sbjct: 563 LAKQFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNSIPVIAQHTGADSASVVFDAFQAAK 622 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ VDVLI DTAGRL N LM + K+ RV+K++DP APH V+ +DA TGQNA+ QV Sbjct: 623 ARNVDVLIADTAGRLQNKDNLMQELEKIARVMKKIDPDAPHEVMLTIDAGTGQNAISQVN 682 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F+ G TG+ ++K+DGTA+GG + + IP+ ++GVGEGI+DL F + DF + Sbjct: 683 LFNQCVGLTGITLSKLDGTAKGGVIFAVADKFNIPIRYIGVGEGIDDLRSFKSDDFIDAL 742 Query: 311 T 311 Sbjct: 743 F 743 >gi|88858436|ref|ZP_01133078.1| Cell division transporter substrate-binding protein FtsY [Pseudoalteromonas tunicata D2] gi|88820053|gb|EAR29866.1| Cell division transporter substrate-binding protein FtsY [Pseudoalteromonas tunicata D2] Length = 565 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 127/312 (40%), Positives = 194/312 (62%), Gaps = 1/312 (0%) Query: 5 KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64 + + + S+ +L K T + G +I S +++DD + EELE L+ +D+GV Sbjct: 253 EESPKKDSFFSRLKKSLIKTKQSIGSGFINIFSGKKIDDELFEELETQLLTADLGVDTTL 312 Query: 65 KIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 K++ L K + LYD+ + + +ML + + + + P VIL+VGVNGVG Sbjct: 313 KLIARLTEAADRKQLKDGDALYDLLKQEMAQMLKSAEQALDTEKATGPFVILMVGVNGVG 372 Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 KTT IGKL+K+ G VMLAAGDTFR+AA++QL++W R + G+D+A++ + Sbjct: 373 KTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVIAQHTGADSASVIF 432 Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 +AF+ A+A+KVD+LI DTAGRL N LM + K+ RV+K+LDP APH V+ +DA TGQ Sbjct: 433 DAFQAAKARKVDILIADTAGRLQNKDNLMQELEKIARVMKKLDPDAPHEVMLTIDAGTGQ 492 Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303 NA+ QV++F+ G TG+ +TK+DGTA+GG + + IP+ ++GVGEGI+DL F + Sbjct: 493 NAISQVDLFNKAVGLTGISLTKLDGTAKGGVIFAVADKFNIPIRYIGVGEGIDDLRAFKS 552 Query: 304 KDFSAVITGCLD 315 +F + D Sbjct: 553 DEFINALFSQDD 564 >gi|294789648|ref|ZP_06754882.1| signal recognition particle-docking protein FtsY [Simonsiella muelleri ATCC 29453] gi|294482449|gb|EFG30142.1| signal recognition particle-docking protein FtsY [Simonsiella muelleri ATCC 29453] Length = 480 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 124/312 (39%), Positives = 190/312 (60%), Gaps = 2/312 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 M +++ S+ L W +L +G + ++ + + + ++D+ + EELE L+ SD+G+ Sbjct: 168 MPPEQIESDKLGWTARLKQGLTKSRNQMAKSLAGVFGGGKIDEDLYEELETTLLISDMGI 227 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 ++++ E+ + K + L + + ++++L PL KP + +P VI++ G+ Sbjct: 228 EATEQLMNEVRKRVSLKGLKDGNELRTTLKDALYELLKPLEKPLEIPNNGQPFVIMMAGI 287 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NG GKTT IGKL+K G VMLAAGDTFR+AA +QL+ W R + S+ D+A Sbjct: 288 NGAGKTTSIGKLAKYFQAQGKSVMLAAGDTFRAAAREQLQEWGARNGVTVI-SQASGDSA 346 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ ++A + A+AKK+DV++ DTAGRL LM I K+ RVL++ P APH V+ VLDA Sbjct: 347 AVCFDAVESAKAKKIDVVLADTAGRLPTQLHLMEEIKKVKRVLQKSMPDAPHEVMVVLDA 406 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 GQNA+ QV F G TGLI+TK+DGTA+GG L + IPV ++GVGEGI+DL Sbjct: 407 NIGQNAINQVVAFDDALGVTGLIVTKLDGTAKGGVLAALASNRPIPVRYIGVGEGIDDLR 466 Query: 300 PFVAKDFSAVIT 311 PF A+ F + Sbjct: 467 PFDARAFVDALL 478 >gi|254292478|ref|YP_003058501.1| signal recognition particle-docking protein FtsY [Hirschia baltica ATCC 49814] gi|254041009|gb|ACT57804.1| signal recognition particle-docking protein FtsY [Hirschia baltica ATCC 49814] Length = 446 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 137/309 (44%), Positives = 208/309 (67%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 ++ + ++T+G +S KL +GI+ + + ++LDD EELEDLLI SD+G +VA ++ Sbjct: 133 ETKKPGFFARMTQGLQRSSSKLADGISSVFTKKKLDDDTLEELEDLLISSDLGASVAMRV 192 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 + + R+ K+V+ + + +++ I +L P + + P V+L VGVNG GKTT Sbjct: 193 CDNIRKDRFDKEVTDEEIKQALAQEITNVLKPREEILDLSDGPSPRVVLFVGVNGSGKTT 252 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGK++ K+S G ++LAAGDTFR+AA++QLK+WA+R +A F+ G+D+A LAY+A Sbjct: 253 TIGKIASKLSAQGANILLAAGDTFRAAAVEQLKVWAERANAGFLSRPDGADSAGLAYDAV 312 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 KQA + D+++IDTAGRL N + LM + K++R +++++P APH V+ VLDAT GQNAL Sbjct: 313 KQATTENRDLVLIDTAGRLQNRTELMDELAKVVRAIRKIEPTAPHEVILVLDATVGQNAL 372 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QVE F AG TGL+MTK+DGTA+GG L+ I H +P++F+G+GE DL PF A F Sbjct: 373 SQVEAFKHTAGVTGLVMTKLDGTAKGGVLVAIADKHALPIHFVGIGEKAEDLHPFSASAF 432 Query: 307 SAVITGCLD 315 + + G D Sbjct: 433 ANALVGLSD 441 >gi|239994821|ref|ZP_04715345.1| signal recognition particle GTPase [Alteromonas macleodii ATCC 27126] Length = 382 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 127/313 (40%), Positives = 196/313 (62%), Gaps = 6/313 (1%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 S +L + + T L GI + + +DD + E+LE L+ +D+G+ QKI++ L Sbjct: 69 SLFARLKESLSRTKENLGSGIVSLFKGKTIDDELYEDLETQLLVADVGMDTTQKIIDHLT 128 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNW-----DFSHRPHVILVVGVNGVGKT 125 KD+ L D+ + + ML +++P + D S P VIL+VGVNGVGKT Sbjct: 129 DSASRKDLKDAEALLDIMKQQMSGMLSQVNQPLSEVMQAHDSSEGPFVILMVGVNGVGKT 188 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T IGKL+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Y+A Sbjct: 189 TTIGKLAKQFQQEGKKVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGADSASVLYDA 248 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 + A+++ D+LI DTAGRL N + LM + K++RV+K+++P+APH V+ LDA TGQNA Sbjct: 249 LEAAKSRGTDILIADTAGRLQNKNNLMEELKKVVRVMKKINPNAPHEVMLTLDAGTGQNA 308 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 + Q ++F+ G TG+ +TK+DGTA+GG + I KIP+ ++GVGE I+DL F ++ Sbjct: 309 ISQAKLFNEAVGLTGITLTKLDGTAKGGVIFSIADKFKIPIRYIGVGESIDDLRQFDGQE 368 Query: 306 FSAVITGCLDYGE 318 F + +D E Sbjct: 369 FIDALFSEMDTPE 381 >gi|296448346|ref|ZP_06890235.1| signal recognition particle-docking protein FtsY [Methylosinus trichosporium OB3b] gi|296254138|gb|EFH01276.1| signal recognition particle-docking protein FtsY [Methylosinus trichosporium OB3b] Length = 346 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 151/312 (48%), Positives = 218/312 (69%), Gaps = 3/312 (0%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 SW +LT G + +S + +GI+D+ + R+LD EELED+L+R+D+G+A AQ+I Sbjct: 32 KRSWWERLTGGLSRSSQAIVQGISDLFTKRKLDALTLEELEDVLVRADLGLAAAQRISAT 91 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + RY K + V ++E + ++L P+++PF D S +P ++LVVGVNG GKTT I Sbjct: 92 VGKARYEKTIGPDEVRAILAEEVERVLAPVARPFELDESKKPFIVLVVGVNGSGKTTTIA 151 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ K + G KVMLAAGDTFR+AA++QL+ W +R + + G+DAA LA++A K A Sbjct: 152 KLAAKWTAEGRKVMLAAGDTFRAAAVEQLRFWGERLNVSVCYAPEGADAAGLAFDAIKSA 211 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + + D+L++DTAGRL N + LMA + K++RV+K+ +P APH+VL VLDAT GQNA+ QV Sbjct: 212 RERGSDILLMDTAGRLQNRTELMAELAKIVRVMKKAEPEAPHAVLLVLDATVGQNAVAQV 271 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 ++F +AG TGL+MTK+DGTARGG L+ I + +P++F+GVGEG DLEPF A+DF+ Sbjct: 272 DVFGKIAGVTGLVMTKLDGTARGGILVAIAEAYGLPIHFIGVGEGAEDLEPFTARDFARA 331 Query: 310 ITGC-LDYGEEK 320 I G D EEK Sbjct: 332 IAGLEGD--EEK 341 >gi|307824536|ref|ZP_07654761.1| signal recognition particle-docking protein FtsY [Methylobacter tundripaludum SV96] gi|307734520|gb|EFO05372.1| signal recognition particle-docking protein FtsY [Methylobacter tundripaludum SV96] Length = 664 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 125/298 (41%), Positives = 181/298 (60%), Gaps = 2/298 (0%) Query: 16 KLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74 +L T L + I + + +D+ + EE+E L+ +DIGV +I++ L Sbjct: 364 RLKTQLKRTRSGLSGVLAHIPLGRQEIDEDLLEEIEASLLMADIGVDATTEIIKRLTESV 423 Query: 75 YAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133 ++ L + + + ML P SK + +P VILVVGVNG GKTT IGKL+K Sbjct: 424 ERHQLNDGEALSAALKQELLIMLQPCSKNLHIPKQDKPFVILVVGVNGAGKTTTIGKLAK 483 Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 ++ G VMLAAGDTFR+AA++QL+ W +R + V G+D+A++ Y+ + AQAK Sbjct: 484 RLQAQGHSVMLAAGDTFRAAAVEQLQTWGERNNIHVVAQHTGADSASVIYDGVQSAQAKG 543 Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253 +DVLI DTAGRLH S LM + K+ R++ +LD APH VL VLDA TGQNAL Q ++F+ Sbjct: 544 IDVLIADTAGRLHTKSNLMDELKKVKRIMSKLDETAPHEVLLVLDAGTGQNALSQTKLFN 603 Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 TGL++TK+DGTA+GG + + IP+ F+G+GEGI+DL+ F A F + Sbjct: 604 ETVELTGLVLTKLDGTAKGGIIFALAKQFGIPIRFIGIGEGIDDLQDFDADAFVNALF 661 >gi|226939167|ref|YP_002794238.1| FtsY [Laribacter hongkongensis HLHK9] gi|226714091|gb|ACO73229.1| FtsY [Laribacter hongkongensis HLHK9] Length = 400 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 129/312 (41%), Positives = 192/312 (61%), Gaps = 3/312 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 ++++ A SW +L G + T KL + + + ++D+ + +ELE +L+ SD+GV Sbjct: 90 VASEAAAPRKQSWSERLKAGLSKTRDKLGKQLAGLFGGGQIDEDLYDELETILLTSDMGV 149 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 A + ++E++ + K + L D + E + ++ PL KP N D S P VI++ GV Sbjct: 150 AATRHLLEDVRRRVSLKGLKDASQLKDALKESLMDLIGPLEKPLNLDRSG-PLVIMMAGV 208 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NG GKTT IGKL+K V+LAAGDTFR+AA +QL W R + S+ G DAA Sbjct: 209 NGAGKTTSIGKLAKYFQGHRKSVLLAAGDTFRAAAREQLAEWGARNQVTVI-SQQGGDAA 267 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ ++A + AQA+K+D+++ DTAGRL LM I K+ RV+ + P APH +L VLDA Sbjct: 268 AVCFDAVQAAQARKIDIVLADTAGRLPTQLHLMEEIRKVKRVISKALPQAPHEILLVLDA 327 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQNAL QV+ F G TGLI+TK+DGTA+GG + I +P+YF+GVGE ++DL Sbjct: 328 NTGQNALAQVKAFDDALGLTGLILTKLDGTAKGGVIAAIARERPVPMYFVGVGETLDDLR 387 Query: 300 PFVAKDFSAVIT 311 PF A+++ + Sbjct: 388 PFSAREYVDALF 399 >gi|148251983|ref|YP_001236568.1| signal recognition particle-docking protein FtsY [Bradyrhizobium sp. BTAi1] gi|146404156|gb|ABQ32662.1| signal recognition particle-docking protein FtsY [Bradyrhizobium sp. BTAi1] Length = 315 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 156/315 (49%), Positives = 220/315 (69%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 M++ + LSW R+L+ G TS L + D+++ R+LD + +++ED+L+R+D+G Sbjct: 1 MNDTTSETPKLSWWRRLSAGLKRTSGALGTAVADLVTKRKLDRAMLDDIEDVLLRADLGT 60 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 VA +I E + RY K +S V V+ + K+L P++KP + SH+P VILVVGVN Sbjct: 61 QVAARIAEAVGAGRYDKAISADEVKAVVATEVEKVLSPVAKPLVVEASHKPFVILVVGVN 120 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+ K + G +VMLAAGDTFR+AAI+QLK+W +RT A + GSD+A+ Sbjct: 121 GSGKTTTIGKLAAKFASDGKQVMLAAGDTFRAAAIEQLKVWGERTKAPVIAGAQGSDSAS 180 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LA+ A A+ + D+L+IDTAGRL N + LM + K++RV++++D APH+VL VLDAT Sbjct: 181 LAFTAITAAKEQARDILLIDTAGRLQNKAELMNELEKVVRVIRKVDASAPHAVLLVLDAT 240 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQNAL QVE FH AG TGL+MTK+DGTARGG L+ + K+PV+F+GVGEG++DL+P Sbjct: 241 VGQNALSQVEAFHRTAGVTGLVMTKLDGTARGGILVALSEKFKLPVHFIGVGEGVDDLQP 300 Query: 301 FVAKDFSAVITGCLD 315 F A+DF+ I G D Sbjct: 301 FAARDFARAIAGIDD 315 >gi|53802591|ref|YP_112672.1| cytochrome oxidase assembly family protein/cell division protein FtsY [Methylococcus capsulatus str. Bath] gi|53756352|gb|AAU90643.1| cytochrome oxidase assembly family protein/cell division protein FtsY [Methylococcus capsulatus str. Bath] Length = 671 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 125/301 (41%), Positives = 186/301 (61%), Gaps = 2/301 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L T L G+ + R+D + +E+E+ L+ +D+GV V ++I+ +L Sbjct: 360 NLFERLRGQLGKTRSSLT-GLLSALGRGRIDRALLDEIEEQLLMADVGVPVTREIIADLG 418 Query: 72 TKRYAKDVSVQR-VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + ++ + R + + + ++ P S P RP VILVVGVNGVGKTT IGK Sbjct: 419 SDLDRQEPADGRALRDRLRGRLLDIVRPCSVPLVIPPEVRPFVILVVGVNGVGKTTTIGK 478 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K++ + G VMLAAGDTFR+AA++QL+ W +R + G+D+A++ Y+A + A+ Sbjct: 479 LAKRLQNEGHSVMLAAGDTFRAAAVEQLQTWGERNKIAVIAQHSGADSASVIYDAVEAAR 538 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ VD+LI DTAGRLH S LM + K+ R++ RLD APH VL VLDA TGQNAL Q Sbjct: 539 ARGVDILIADTAGRLHTKSNLMEELSKIKRIIGRLDETAPHEVLLVLDAGTGQNALSQAR 598 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F+ G TGL++TK+DGTA+GG + + IP+ F+G+GEGI+DL F A F + Sbjct: 599 LFNEAVGLTGLVLTKLDGTAKGGVIFALARQFGIPIRFIGIGEGIDDLRDFDAVQFIDAL 658 Query: 311 T 311 Sbjct: 659 F 659 >gi|315127796|ref|YP_004069799.1| cell division transporter substrate-binding protein [Pseudoalteromonas sp. SM9913] gi|315016310|gb|ADT69648.1| cell division transporter substrate-binding protein [Pseudoalteromonas sp. SM9913] Length = 498 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 124/305 (40%), Positives = 190/305 (62%), Gaps = 1/305 (0%) Query: 8 SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67 + + +L KG T + + G I S +++DD + EELE L+ +D+GV K++ Sbjct: 187 PKKEGFFSRLKKGLLKTRVNIGSGFASIFSGKKIDDELFEELETQLLTADLGVDTTMKLI 246 Query: 68 EELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 + L K + LY++ + + ML +P +P VIL+VGVNGVGKTT Sbjct: 247 DSLTDAADRKQLKDGDALYELMKQEMATMLKTAEQPLEIPADKKPFVILMVGVNGVGKTT 306 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGK++K+ + G VMLAAGDTFR+AA++QL++W +R S + G+D+A++ ++AF Sbjct: 307 TIGKMAKQFQNQGKSVMLAAGDTFRAAAVEQLQVWGERNSIPVIAQHTGADSASVVFDAF 366 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 + A+A+ VDVLI DTAGRL N LM + K+ RV+K++DP APH V+ +DA TGQNA+ Sbjct: 367 QAAKARNVDVLIADTAGRLQNKDNLMQELEKIARVMKKVDPDAPHEVMLTIDAGTGQNAI 426 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QV +F+ G TG+ ++K+DGTA+GG + + IP+ ++GVGE I+DL F + DF Sbjct: 427 SQVNLFNQCVGLTGITLSKLDGTAKGGVIFAVADKFNIPIRYIGVGESIDDLRTFKSDDF 486 Query: 307 SAVIT 311 + Sbjct: 487 IDALF 491 >gi|77359320|ref|YP_338895.1| cell division transporter substrate-binding protein [Pseudoalteromonas haloplanktis TAC125] gi|76874231|emb|CAI85452.1| Cell division transporter substrate-binding protein FtsY [Pseudoalteromonas haloplanktis TAC125] Length = 651 Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 128/312 (41%), Positives = 193/312 (61%), Gaps = 2/312 (0%) Query: 2 SNQKVAS-ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 + QKV + + +L KG T + + G I S +++DD + EELE L+ +D+GV Sbjct: 333 AAQKVEKPKKEGFFSRLKKGLLKTRVNIGSGFASIFSGKKIDDDLFEELETQLLTADLGV 392 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 K+++ L K + LY++ + + ML +P +P VIL+VGV Sbjct: 393 DTTMKLIDRLTDAANRKQLKDGDALYELMKQEMAVMLKTAEQPLVIPADKKPFVILMVGV 452 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+K+ G VMLAAGDTFR+AA++QL++W +R S + G+D+A Sbjct: 453 NGVGKTTTIGKLAKQFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNSIPVIAQHTGADSA 512 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++AF+ A+A+ VDVLI DTAGRL N LM + K+ RV+K++DP APH V+ +DA Sbjct: 513 SVIFDAFQAAKARNVDVLIADTAGRLQNKDNLMQELEKIARVMKKIDPDAPHEVMLTIDA 572 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQNA+ QV +F+ G TG+ ++K+DGTA+GG + + IP+ ++GVGE I+DL Sbjct: 573 GTGQNAISQVNLFNQCVGLTGITLSKLDGTAKGGVIFAVADKFNIPIRYIGVGESIDDLR 632 Query: 300 PFVAKDFSAVIT 311 F + DF + Sbjct: 633 AFKSDDFIDALF 644 >gi|226946816|ref|YP_002801889.1| signal recognition particle-docking protein FtsY [Azotobacter vinelandii DJ] gi|226721743|gb|ACO80914.1| signal recognition particle-docking protein FtsY [Azotobacter vinelandii DJ] Length = 451 Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 128/304 (42%), Positives = 191/304 (62%), Gaps = 2/304 (0%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 + +L +G A T L EG+ + + +DD + EELE L+ +D+GV I++ Sbjct: 142 KSGFFARLRQGLAKTGSTLGEGMASLFLGEKAIDDELLEELETRLLLADVGVEATTAIIQ 201 Query: 69 ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L + K+++ LY + E + +L P+ +P + RP+VILVVGVNGVGKTT Sbjct: 202 SLTQRVARKELADSEALYRALQEELAALLRPVEQPLVLESEQRPYVILVVGVNGVGKTTT 261 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+ ++ G KVMLAAGDTFR+AA++QL+IW +R + G+D+A++ ++A + Sbjct: 262 IGKLAARLQQEGRKVMLAAGDTFRAAAVEQLQIWGERNRIPVIAQHTGADSASVIFDALQ 321 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+A+ +DVLI DTAGRLH LM + K+ RVL +LD APH VL VLDA TGQNA+ Sbjct: 322 AAKARGMDVLIADTAGRLHTKDNLMEELKKVRRVLGKLDEAAPHEVLLVLDAGTGQNAIN 381 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 Q + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEG++DL F A++F Sbjct: 382 QTKQFNQAVEITGLALTKLDGTAKGGVIFALARQFGLPIRYIGVGEGVDDLRDFAAEEFV 441 Query: 308 AVIT 311 + Sbjct: 442 RALF 445 >gi|332142894|ref|YP_004428632.1| signal recognition particle GTPase [Alteromonas macleodii str. 'Deep ecotype'] gi|332143061|ref|YP_004428799.1| signal recognition particle GTPase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552916|gb|AEA99634.1| signal recognition particle GTPase [Alteromonas macleodii str. 'Deep ecotype'] gi|327553083|gb|AEA99801.1| signal recognition particle GTPase [Alteromonas macleodii str. 'Deep ecotype'] Length = 541 Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 126/314 (40%), Positives = 193/314 (61%), Gaps = 6/314 (1%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q E S +L + + T L GI + + +DD + E+LE L+ +D+G+ Sbjct: 220 QDKPKEKKSLFARLRESLSRTKENLGSGIVSLFKGKAIDDELYEDLETQLLVADVGMDTT 279 Query: 64 QKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNW-----DFSHRPHVILVV 117 QKI+ L KD+ L + + + ML +++P + D S P VIL+V Sbjct: 280 QKIITHLTDSASRKDLKDAEALLEILKQRMSGMLSEVNQPLSDVMQAHDASEGPFVILMV 339 Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177 GVNGVGKTT IGKL+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D Sbjct: 340 GVNGVGKTTTIGKLAKQFQQQGKKVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGAD 399 Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237 +A++ Y+A + A+++ D+LI DTAGRL N + LM + K++RV+K+++P+APH V+ L Sbjct: 400 SASVLYDALEAAKSRGTDILIADTAGRLQNKNNLMEELKKVVRVMKKINPNAPHEVMLTL 459 Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297 DA TGQNA+ Q ++F+ G TG+ +TK+DGTA+GG + I KIP+ ++GVGE I+D Sbjct: 460 DAGTGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFSIADKFKIPIRYIGVGESIDD 519 Query: 298 LEPFVAKDFSAVIT 311 L F ++F + Sbjct: 520 LRQFDGQEFIDALF 533 >gi|283850392|ref|ZP_06367681.1| signal recognition particle-docking protein FtsY [Desulfovibrio sp. FW1012B] gi|283574418|gb|EFC22389.1| signal recognition particle-docking protein FtsY [Desulfovibrio sp. FW1012B] Length = 626 Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 126/313 (40%), Positives = 191/313 (61%), Gaps = 3/313 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIG 59 + + E KL++G A T ++ + I ++ S +D+ EELE++L+ +D+G Sbjct: 314 LDLEDEEDERNRLFLKLSEGLAKTKEQIVKRIDGLLGSHAVIDEAFWEELEEILLMADVG 373 Query: 60 VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 A K++ L + + + V ++ L H++ P + P VI+++GV Sbjct: 374 FEPAAKLLGSLRAEVRRRGTTDPAVFKEI--LRHELSEIFRTPKTIRAFNPPEVIMMIGV 431 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT I KL+ + G KV++AAGDTFR+AAI+Q++IWA R A F GSD A Sbjct: 432 NGVGKTTTIAKLAHRDIMQGKKVLIAAGDTFRAAAIEQMQIWAKRVGAGFYTKGEGSDPA 491 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+A+EA +A A+ VDVL +DTAGRLH + LM + K+ RVL + P APH + VLDA Sbjct: 492 AVAFEAMDRALAEGVDVLYLDTAGRLHTKANLMEELKKIRRVLGKKHPGAPHRSVLVLDA 551 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNAL Q +F+ AG +I+TK+DGTA+GG ++ I ++ IP+ ++G+GE + DL Sbjct: 552 TTGQNALSQTRLFNEAAGVDEIILTKLDGTAKGGVVVGIALSFGIPITYVGLGEKMEDLR 611 Query: 300 PFVAKDFSAVITG 312 PF +DF+ + G Sbjct: 612 PFDGQDFAQALLG 624 >gi|319899511|ref|YP_004159608.1| cell division protein [Bartonella clarridgeiae 73] gi|319403479|emb|CBI77059.1| cell division protein [Bartonella clarridgeiae 73] Length = 387 Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats. Identities = 154/312 (49%), Positives = 220/312 (70%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 +S V + +W +L KG + +S +L + I + + ++LD+ +ELED+LI++D G+ Sbjct: 73 LSTSTVEQKKAAWFERLKKGLSLSSQQLSDSIGSLFAKKKLDENTLQELEDILIQADFGI 132 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 +I++ L T RY K++S + + V+ I K+L P++ P D +H+PHVIL+VGVN Sbjct: 133 ETTTRIIDILATGRYEKNLSPKDIYTIVTNEIKKVLEPIAFPLEIDLNHKPHVILLVGVN 192 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+ K++ GLK+ML AGDTFR+AAI+QL IW +RT A + S++ +D A+ Sbjct: 193 GTGKTTTIGKLAAKLTAGGLKIMLVAGDTFRAAAIEQLHIWGERTKAPVISSKLAADPAS 252 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 L ++A+K+A+ + DVLIIDTAGRL N LM + K+IRVL + +P APH+VLQ LDAT Sbjct: 253 LVFDAYKKAKKEGSDVLIIDTAGRLQNKIELMDELAKIIRVLGKHNPQAPHTVLQTLDAT 312 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNAL QV +F +AG GL+MTK+DGTARGG L+ I HK+PV+F+G+GE + DLEP Sbjct: 313 TGQNALNQVNIFRDIAGVNGLVMTKLDGTARGGILVAIASKHKLPVHFIGIGENVEDLEP 372 Query: 301 FVAKDFSAVITG 312 F A DF+ I G Sbjct: 373 FSASDFAEAIIG 384 >gi|290473621|ref|YP_003466493.1| cell division protein: membrane binding (N-terminal); GTPase domain (C-terminal) [Xenorhabdus bovienii SS-2004] gi|289172926|emb|CBJ79697.1| cell division protein: membrane binding (N-terminal); GTPase domain (C-terminal) [Xenorhabdus bovienii SS-2004] Length = 465 Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats. Identities = 127/316 (40%), Positives = 192/316 (60%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 + ++ + +L + T L G + S +++DD + EELE+ L+ +D+GV Sbjct: 151 LPKEQDRPSKEGFFARLKRSLVKTRQNLGSGFLGLFSGKKIDDDLFEELEEQLLVADVGV 210 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +KI+ L K++ LY + E + +L + KP + + P+VIL+VGV Sbjct: 211 ETTRKIINNLTAHASRKELKDAEALYTKLKEEMSDILAKVDKPLDIE-GKSPYVILMVGV 269 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W +R + G+D A Sbjct: 270 NGVGKTTTIGKLARQYQSQGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADPA 329 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+AK VD+LI DTAGRL N S LM + K++RV+++LD PH ++ LDA Sbjct: 330 SVIFDAIQSAKAKGVDILIADTAGRLQNKSHLMEELKKIVRVMRKLDEETPHEIMLTLDA 389 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQNA+ Q ++FH G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL Sbjct: 390 CTGQNAVSQAKLFHEAVGLTGISLTKLDGTAKGGVIFAIADQFDIPIRYIGVGEGIEDLR 449 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + D Sbjct: 450 PFKADDFIEALFARED 465 >gi|304320389|ref|YP_003854032.1| FtsY, signal recognition particle-docking protein [Parvularcula bermudensis HTCC2503] gi|303299291|gb|ADM08890.1| FtsY, signal recognition particle-docking protein [Parvularcula bermudensis HTCC2503] Length = 459 Score = 314 bits (806), Expect = 8e-84, Method: Composition-based stats. Identities = 141/300 (47%), Positives = 193/300 (64%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + + + +L G A TS KL GI I + +RLDD EELEDLLI +DIGV Sbjct: 146 PTDQPTDKPKGFFGRLRSGLAKTSAKLSGGIGTIFTKKRLDDDTLEELEDLLIMADIGVP 205 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 +I+ +L ++ ++VS + + +S I L PL D +H PHVIL+ GVNG Sbjct: 206 TTTRIITQLAKDKFDQEVSGEDIRAILSREIETTLAPLEAQLAPDGTHGPHVILMTGVNG 265 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 GKTT IGKL+++ + G V+LAA DTFR+AAI+QL +W +R + E G+D AAL Sbjct: 266 AGKTTTIGKLAQQFTAEGKSVLLAACDTFRAAAIEQLTVWGERVGVPVISREQGADPAAL 325 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 AY+A +AQA+ +D+++IDTAGRL N LM +GK++RV+K+LD APH + VLDAT Sbjct: 326 AYDAVAKAQAEGIDIVLIDTAGRLQNRRELMDELGKIVRVVKKLDDSAPHDAVLVLDATV 385 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNAL Q E F A TGLIMTK+DGTARGG L+ + +P++ +GVGE + DL+PF Sbjct: 386 GQNALSQTEAFLETAKITGLIMTKLDGTARGGVLVALGDKFGLPIHAIGVGETVEDLQPF 445 >gi|27375584|ref|NP_767113.1| cell division protein [Bradyrhizobium japonicum USDA 110] gi|27348721|dbj|BAC45738.1| bll0473 [Bradyrhizobium japonicum USDA 110] Length = 315 Score = 314 bits (806), Expect = 9e-84, Method: Composition-based stats. Identities = 157/313 (50%), Positives = 219/313 (69%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 M++ LSW R+L+ G TS L + D+++ R+LD + +++ED+L+R+D+G Sbjct: 1 MNDTTSDPPKLSWWRRLSNGLKRTSSSLGTAVADLVTKRKLDRAMLDDIEDVLLRADLGT 60 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 +VA +I + + T RY K +S V V+ + K+L P++KP D + +P VILVVGVN Sbjct: 61 SVAVRIADAVGTGRYDKAISADEVKDVVATEVEKVLAPVAKPLEIDAARKPFVILVVGVN 120 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKLS+K + G KVMLAAGDTFR+AAI+QLK+W +RT + GSD+A+ Sbjct: 121 GSGKTTTIGKLSQKFASEGRKVMLAAGDTFRAAAIEQLKVWGERTKTPVIAGTQGSDSAS 180 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 LA+ A A+ +K DVL+IDTAGRL N + LM + K++RV++++D APH+VL VLDAT Sbjct: 181 LAFNALTAAKEQKTDVLLIDTAGRLQNKAELMNELEKVVRVIRKVDDTAPHAVLLVLDAT 240 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQNAL QVE FH AG TGL+MTK+DGTARGG L+ + K+PV+F+GVGEG++DL P Sbjct: 241 VGQNALSQVEAFHRTAGVTGLVMTKLDGTARGGILVALAEKFKLPVHFIGVGEGVDDLAP 300 Query: 301 FVAKDFSAVITGC 313 F A+DF+ I G Sbjct: 301 FTARDFARAIAGI 313 >gi|329118182|ref|ZP_08246892.1| cell division protein FtsY [Neisseria bacilliformis ATCC BAA-1200] gi|327465603|gb|EGF11878.1| cell division protein FtsY [Neisseria bacilliformis ATCC BAA-1200] Length = 470 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 121/301 (40%), Positives = 183/301 (60%), Gaps = 2/301 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 W +L +G + K+ + + + ++DD + EELE +L+ SD+G+ + I+E++ Sbjct: 169 GWAARLKQGLGKSRDKMAKSLAGVFGGGKIDDELYEELETVLLTSDMGIEATEHIMEDVR 228 Query: 72 TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + K +S L + E ++++L PL +P + +P VI++ G+NG GKTT IGK Sbjct: 229 RRVSLKGLSDSGQLRRALKESLYELLAPLEQPLEIPDNGQPFVIMMAGINGAGKTTSIGK 288 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K G V+LAAGDTFR+AA +QL+ W R V S+ D+AA+ Y+A + A+ Sbjct: 289 LAKYFQQQGKTVILAAGDTFRAAAREQLQEWGARNGVTVV-SQAKGDSAAVCYDAVESAK 347 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A++ D+++ DTAGRL LM I K+ RVL++ APH ++ VLDA GQNA+ QV Sbjct: 348 ARRTDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMSDAPHEIIVVLDANIGQNAVNQVI 407 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L + IPV ++GVGEGI+DL PF A+ F + Sbjct: 408 AFDDALGVTGLIVTKLDGTAKGGVLAALAAARPIPVRYIGVGEGIDDLRPFNARAFVDAL 467 Query: 311 T 311 Sbjct: 468 I 468 >gi|225025030|ref|ZP_03714222.1| hypothetical protein EIKCOROL_01919 [Eikenella corrodens ATCC 23834] gi|224942260|gb|EEG23469.1| hypothetical protein EIKCOROL_01919 [Eikenella corrodens ATCC 23834] Length = 480 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 119/311 (38%), Positives = 190/311 (61%), Gaps = 4/311 (1%) Query: 4 QKVASES--LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + V+ + L W +L +G + + ++ + + + ++D+ + EELE +L+ SD+G+ Sbjct: 171 EPVSEQPTLLGWAARLKQGLSKSRQQMAKSLAGVFGGGKIDEDLYEELETVLLTSDMGIE 230 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + ++EE+ + + + L + E I++++ PL +P RP VI++ G+N Sbjct: 231 ATEHLMEEVRQRVSLRGLKDGEELRGALKEAIYELIKPLEQPLALPADKRPFVIMLAGIN 290 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+K G V+LAAGDTFR+AA +QL W +R + S+ D+AA Sbjct: 291 GAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLAEWGERNGVTVI-SQASGDSAA 349 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++A + A+A+ +D+++ DTAGRL + LM I K+ RVL++ P APH ++ VLDA Sbjct: 350 VCFDAVEAAKARGIDIVLADTAGRLPTQTHLMEEIKKVKRVLQKSMPDAPHEIVVVLDAN 409 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQNA+ QV F G TGLI+TK+DGTA+GG L + +PV F+GVGEGI+DL P Sbjct: 410 IGQNAVNQVIAFDDALGLTGLIVTKLDGTAKGGVLAALASRRPVPVRFIGVGEGIDDLRP 469 Query: 301 FVAKDFSAVIT 311 F A++F + Sbjct: 470 FNAREFVDALL 480 >gi|320154974|ref|YP_004187353.1| signal recognition particle receptor protein FtsY subunit alpha [Vibrio vulnificus MO6-24/O] gi|319930286|gb|ADV85150.1| signal recognition particle receptor protein FtsY (alpha subunit) [Vibrio vulnificus MO6-24/O] Length = 395 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 129/309 (41%), Positives = 199/309 (64%), Gaps = 1/309 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ Sbjct: 83 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLVADVGMDTT 142 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+E L K +D+ LY + E + ++L + +P D S P+VIL+VGVNGV Sbjct: 143 LKIIENLTEKASRRDLKDGEALYGLLKEEMAEILSKVEQPLQVDSSKTPYVILMVGVNGV 202 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ + G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 203 GKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 262 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TG Sbjct: 263 YDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 322 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF Sbjct: 323 QNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFNIPIRYIGVGEGIEDLRPFE 382 Query: 303 AKDFSAVIT 311 ++F + Sbjct: 383 TQEFIDALF 391 >gi|78043121|ref|YP_360274.1| signal recognition particle-docking protein FtsY [Carboxydothermus hydrogenoformans Z-2901] gi|77995236|gb|ABB14135.1| signal recognition particle-docking protein FtsY [Carboxydothermus hydrogenoformans Z-2901] Length = 303 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 132/302 (43%), Positives = 190/302 (62%), Gaps = 2/302 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + + +L + T + I D+ +D+ + E+LE++LI D+GV + ++VE+L Sbjct: 1 MGFFDRLKESLIKTKQNIVAKIEDVFKKSTVDEELFEKLEEILIEGDVGVKPSLELVEKL 60 Query: 71 LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + ++ L V E I K+L + P VILVVGVNGVGKTT IG Sbjct: 61 RKTARERRITDSEQLKQVLKEEILKILEAGDNKLK-NVPRTPLVILVVGVNGVGKTTTIG 119 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ G +V+LAAGDTFR+AAI+QL+IW ++ + + GSD AA+A++A K A Sbjct: 120 KLAYYFKQQGKQVLLAAGDTFRAAAIEQLEIWGNKVGCPVIKQKEGSDPAAVAFDAVKAA 179 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 A+K+DVLIIDTAGRLH + LM + K+ RV++R P AP VL VLDATTGQNAL QV Sbjct: 180 IARKIDVLIIDTAGRLHTKTNLMEELRKVKRVIERELPGAPDEVLLVLDATTGQNALSQV 239 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E F+ TGL++TK+DGTA+GG +I I +++IP+ F+GVGE ++DL PF ++F Sbjct: 240 EYFNKALDLTGLVLTKLDGTAKGGVIIGIKSSYQIPIKFIGVGEKMDDLRPFDPQEFVEA 299 Query: 310 IT 311 + Sbjct: 300 LF 301 >gi|74316394|ref|YP_314134.1| signal recognition particle-docking protein FtsY [Thiobacillus denitrificans ATCC 25259] gi|74055889|gb|AAZ96329.1| Cell division transporter substrate-binding protein FtsY [Thiobacillus denitrificans ATCC 25259] Length = 376 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 123/304 (40%), Positives = 190/304 (62%), Gaps = 4/304 (1%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68 +SW ++L +G A T +L + + R++D + EELE +LI +DIGV Q +++ Sbjct: 73 RVSWAQRLKQGLAKTRDRLGGQLAGLFGVGRKIDAELFEELETILITADIGVDATQALLD 132 Query: 69 ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L K ++++ L + + + ML+PL P + +H+P ++++ GVNG GKTT Sbjct: 133 TLQKKVRRENLTEASELQTALKQALIDMLLPLQAPLDVK-THKPFILMLAGVNGAGKTTT 191 Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 IGKL+K GL V+LAAGDTFR+AA +QL++W +R V E G A A+ ++A + Sbjct: 192 IGKLAKLYQAQGLSVLLAAGDTFRAAAREQLQVWGERNGVTVVSQEKGDSA-AVIFDAIQ 250 Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247 A+A+ +DV++ DTAGRL LM I K+ RV+++ P APH +L VLDA TGQNA+ Sbjct: 251 AARARNIDVVLADTAGRLPTQLHLMEEIRKVKRVIEKAIPGAPHEILLVLDANTGQNAVA 310 Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307 QV+ F G +GL++TK+DGTA+GG + + +PV ++GVGE ++DL PF A+DF Sbjct: 311 QVKAFDDALGVSGLVLTKLDGTAKGGAIAAVAQARPLPVRYIGVGETVDDLRPFDARDFV 370 Query: 308 AVIT 311 + Sbjct: 371 EAVF 374 >gi|326423803|ref|NP_760099.2| signal recognition particle-docking protein FtsY [Vibrio vulnificus CMCP6] gi|319999171|gb|AAO09626.2| signal recognition particle-docking protein FtsY [Vibrio vulnificus CMCP6] Length = 395 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 129/309 (41%), Positives = 199/309 (64%), Gaps = 1/309 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ Sbjct: 83 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLVADVGMDTT 142 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+E L K +D+ LY + E + ++L + +P D S P+VIL+VGVNGV Sbjct: 143 LKIIENLTEKASRRDLKDGEALYGLLKEEMAEILSKVEQPLQVDSSKTPYVILMVGVNGV 202 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ + G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 203 GKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 262 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA TG Sbjct: 263 YDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 322 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF Sbjct: 323 QNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFNIPIRYIGVGEGIEDLRPFE 382 Query: 303 AKDFSAVIT 311 ++F + Sbjct: 383 TQEFIDALF 391 >gi|226199570|ref|ZP_03795127.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei Pakistan 9] gi|225928451|gb|EEH24481.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei Pakistan 9] Length = 476 Score = 314 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 128/304 (42%), Positives = 185/304 (60%), Gaps = 7/304 (2%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + ++ Sbjct: 179 KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGA 234 Query: 70 LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L K A ++ + + D + EL+ ++L PL K + P V+++ GVNG GKTT I Sbjct: 235 LREKVRAGRLTDPQQVKDALRELLVELLAPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 293 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+K + V+LAAGDTFR+AA +QL IW +R + V + D AA+ ++A Sbjct: 294 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 352 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL Q Sbjct: 353 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 412 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 V+ F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ Sbjct: 413 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 472 Query: 309 VITG 312 + G Sbjct: 473 ALLG 476 >gi|308051465|ref|YP_003915031.1| signal recognition particle-docking protein FtsY [Ferrimonas balearica DSM 9799] gi|307633655|gb|ADN77957.1| signal recognition particle-docking protein FtsY [Ferrimonas balearica DSM 9799] Length = 590 Score = 314 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 124/303 (40%), Positives = 190/303 (62%), Gaps = 1/303 (0%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + +L G TS + G + +++DD + EELE L+ +D+GV +I++ Sbjct: 282 KQGFFARLKAGLRRTSENIGGGFMALFKGKKIDDELFEELETQLLLADVGVETTSRIIDS 341 Query: 70 LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L K ++ L+ + + L + +P + + P VIL+VGVNGVGKTT I Sbjct: 342 LTDKASFGELKDSDALFAHLKSELKDTLSKVDQPLVIENPNGPFVILMVGVNGVGKTTTI 401 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+K+ G VMLAAGDTFR+AA++QL++W DR + + G+D+A++ ++A + Sbjct: 402 GKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTGADSASVIFDALQA 461 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ VDVLI DTAGRL N + LM + K++RV+K+LD +APH V+ LDA+TGQNA+ Q Sbjct: 462 AKARNVDVLIADTAGRLQNKAHLMDELKKIVRVMKKLDENAPHEVMLTLDASTGQNAISQ 521 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 ++F+ G TGL +TK+DGTA+GG + + IPV ++GVGEGI+DL PF ++ F Sbjct: 522 AQIFNEAVGLTGLTLTKLDGTAKGGVIFALADKFGIPVRYIGVGEGIDDLRPFESQAFID 581 Query: 309 VIT 311 + Sbjct: 582 ALF 584 >gi|332968151|gb|EGK07234.1| cell division protein FtsY [Kingella kingae ATCC 23330] Length = 545 Score = 314 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 122/303 (40%), Positives = 185/303 (61%), Gaps = 2/303 (0%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 SL W +L +G + + ++ + + + ++D+ + EELE +LI SD+G+ ++++ E Sbjct: 239 SLGWTARLARGLSKSRNQMAKSLAGVFGGGKIDEDLYEELETVLITSDMGIEATEQLMNE 298 Query: 70 LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + + K + L + + I+ +L PL +P + +P VI++ G+NG GKTT I Sbjct: 299 VRNRVSLKGLKDGAELRSALKDAIYDLLKPLDQPLVLPDNGQPFVIMMAGINGAGKTTSI 358 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+K G VMLAAGDTFR+AA +QL+ W R + + E G A A+ ++A + Sbjct: 359 GKLAKYFQSQGKSVMLAAGDTFRAAAREQLQEWGARNNVTVISQEKGDSA-AVCFDAVEA 417 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+K+DV++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ Q Sbjct: 418 AKARKIDVVLADTAGRLPTQLHLMEEIKKVKRVLQKSMPDAPHEIMVVLDANIGQNAVNQ 477 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 V F G TGLI+TK+DGTA+GG L + + IPV ++GVGE I+DL PF AK F Sbjct: 478 VVAFDDALGVTGLIVTKLDGTAKGGVLAALASSRAIPVRYIGVGESIDDLRPFNAKAFVD 537 Query: 309 VIT 311 + Sbjct: 538 ALL 540 >gi|126451651|ref|YP_001064860.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 1106a] gi|126225293|gb|ABN88833.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 1106a] Length = 476 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 127/304 (41%), Positives = 185/304 (60%), Gaps = 7/304 (2%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + +++ Sbjct: 179 KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDA 234 Query: 70 LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L K A ++ + + D + L+ ++L PL K + P V+++ GVNG GKTT I Sbjct: 235 LREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 293 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+K + V+LAAGDTFR+AA +QL IW +R + V + D AA+ ++A Sbjct: 294 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 352 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL Q Sbjct: 353 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 412 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 V+ F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ Sbjct: 413 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 472 Query: 309 VITG 312 + G Sbjct: 473 ALLG 476 >gi|76808739|ref|YP_332160.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 1710b] gi|76578192|gb|ABA47667.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 1710b] Length = 476 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 127/304 (41%), Positives = 185/304 (60%), Gaps = 7/304 (2%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + +++ Sbjct: 179 KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDA 234 Query: 70 LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L K A ++ + + D + L+ ++L PL K + P V+++ GVNG GKTT I Sbjct: 235 LREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 293 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+K + V+LAAGDTFR+AA +QL IW +R + V + D AA+ ++A Sbjct: 294 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 352 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL Q Sbjct: 353 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 412 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 V+ F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ Sbjct: 413 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 472 Query: 309 VITG 312 + G Sbjct: 473 ALLG 476 >gi|297569034|ref|YP_003690378.1| signal recognition particle-docking protein FtsY [Desulfurivibrio alkaliphilus AHT2] gi|296924949|gb|ADH85759.1| signal recognition particle-docking protein FtsY [Desulfurivibrio alkaliphilus AHT2] Length = 397 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 112/303 (36%), Positives = 182/303 (60%), Gaps = 3/303 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 + +L +G + T L + ++ ++ +D + +ELE++LI +D+G A +++E Sbjct: 70 GFFNRLRQGLSRTRENLVSRMDELFLGKKVIDAELFDELEEILITADLGTATTHELLERA 129 Query: 71 LTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNW-DFSHRPHVILVVGVNGVGKTTVI 128 + +S + L + +L+ L+ +P + P VI+V+GVNGVGKTT I Sbjct: 130 REQVKRDQLSDPKALEGILQQLLQDYLVQADRPAELVMPASGPFVIMVLGVNGVGKTTTI 189 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ K AG +V+L A DTFR+AAI+QL+ W R A+ + + G+D +++ Y+AF Sbjct: 190 GKLAYKFKQAGQQVLLVAADTFRAAAIEQLQAWGQRVDAEVIAQQQGADPSSVIYDAFDY 249 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+ + DV+I+DTAGRLH LM + K+ RV+ + P APH V+ V+DATTGQN + Q Sbjct: 250 ARPRNFDVIIVDTAGRLHTKVNLMEELRKIKRVMNQKIPGAPHEVMLVIDATTGQNGISQ 309 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 +FH +G+ +TK+DGT+RGG ++ I KIP+ F+G+GE + DL F ++F Sbjct: 310 ARLFHEAVEVSGIALTKLDGTSRGGIVVNICREFKIPIRFVGIGEQMEDLRDFEPREFVK 369 Query: 309 VIT 311 + Sbjct: 370 ALF 372 >gi|262273591|ref|ZP_06051405.1| signal recognition particle receptor protein FtsY [Grimontia hollisae CIP 101886] gi|262222569|gb|EEY73880.1| signal recognition particle receptor protein FtsY [Grimontia hollisae CIP 101886] Length = 529 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 126/313 (40%), Positives = 199/313 (63%), Gaps = 1/313 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++ + + +L +G T + L G + S +++DD + EELE+ L+ +D+G+ Sbjct: 217 EQEKPKKEGFFARLKRGLQKTKVNLGAGFFGLFSGKKIDDELFEELEEQLLIADVGMDTT 276 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+ L K K++ LY + + + +L + KP D P VIL+VGVNGV Sbjct: 277 TKIINSLTEKASRKELKDGEALYGILKQEMADILSKVEKPLEIDRKDGPFVILMVGVNGV 336 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ G VMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 337 GKTTTIGKLAKQFQQQGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 396 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N + LM + K++RV+K+LD +APH ++ +DA TG Sbjct: 397 YDAIEAAKARNVDVVIADTAGRLQNKANLMEELKKIVRVMKKLDENAPHEIMLTIDAGTG 456 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q +F+ +A +G+ +TK+DGTA+GG + + IP+ ++GVGEGI+DL PFV Sbjct: 457 QNAISQARLFNDIAPLSGITLTKLDGTAKGGVIFAVADQFNIPIRYIGVGEGIDDLRPFV 516 Query: 303 AKDFSAVITGCLD 315 A++F + D Sbjct: 517 AEEFIEALFSRED 529 >gi|260899650|ref|ZP_05908045.1| cell division protein FtsY [Vibrio parahaemolyticus AQ4037] gi|308106736|gb|EFO44276.1| cell division protein FtsY [Vibrio parahaemolyticus AQ4037] Length = 411 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 128/309 (41%), Positives = 197/309 (63%), Gaps = 1/309 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + S +++DD + EELE+ L+ +D+G+ Sbjct: 99 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTT 158 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+ L K D+ LY + E + ++L + +P D S P+VIL+VGVNGV Sbjct: 159 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGV 218 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 219 GKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 278 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N + LM + K++RV+K++D APH ++ LDA TG Sbjct: 279 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 338 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF Sbjct: 339 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFE 398 Query: 303 AKDFSAVIT 311 ++F + Sbjct: 399 TQEFIDALF 407 >gi|260361295|ref|ZP_05774400.1| cell division protein FtsY [Vibrio parahaemolyticus K5030] gi|308111830|gb|EFO49370.1| cell division protein FtsY [Vibrio parahaemolyticus K5030] Length = 407 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 128/309 (41%), Positives = 197/309 (63%), Gaps = 1/309 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + S +++DD + EELE+ L+ +D+G+ Sbjct: 95 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTT 154 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+ L K D+ LY + E + ++L + +P D S P+VIL+VGVNGV Sbjct: 155 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGV 214 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 215 GKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 274 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N + LM + K++RV+K++D APH ++ LDA TG Sbjct: 275 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 334 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF Sbjct: 335 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFE 394 Query: 303 AKDFSAVIT 311 ++F + Sbjct: 395 TQEFIDALF 403 >gi|153840071|ref|ZP_01992738.1| cell division protein FtsY [Vibrio parahaemolyticus AQ3810] gi|149746343|gb|EDM57398.1| cell division protein FtsY [Vibrio parahaemolyticus AQ3810] Length = 403 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 128/309 (41%), Positives = 197/309 (63%), Gaps = 1/309 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + S +++DD + EELE+ L+ +D+G+ Sbjct: 91 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTT 150 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+ L K D+ LY + E + ++L + +P D S P+VIL+VGVNGV Sbjct: 151 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGV 210 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 211 GKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 270 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N + LM + K++RV+K++D APH ++ LDA TG Sbjct: 271 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 330 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF Sbjct: 331 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFE 390 Query: 303 AKDFSAVIT 311 ++F + Sbjct: 391 TQEFIDALF 399 >gi|28899730|ref|NP_799335.1| cell division protein FtsY [Vibrio parahaemolyticus RIMD 2210633] gi|260879107|ref|ZP_05891462.1| cell division protein FtsY [Vibrio parahaemolyticus AN-5034] gi|260897983|ref|ZP_05906479.1| cell division protein FtsY [Vibrio parahaemolyticus Peru-466] gi|28807982|dbj|BAC61219.1| cell division protein FtsY [Vibrio parahaemolyticus RIMD 2210633] gi|308087163|gb|EFO36858.1| cell division protein FtsY [Vibrio parahaemolyticus Peru-466] gi|308089649|gb|EFO39344.1| cell division protein FtsY [Vibrio parahaemolyticus AN-5034] Length = 405 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 128/309 (41%), Positives = 197/309 (63%), Gaps = 1/309 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + S +++DD + EELE+ L+ +D+G+ Sbjct: 93 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTT 152 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+ L K D+ LY + E + ++L + +P D S P+VIL+VGVNGV Sbjct: 153 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGV 212 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 213 GKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 272 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N + LM + K++RV+K++D APH ++ LDA TG Sbjct: 273 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 332 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF Sbjct: 333 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFE 392 Query: 303 AKDFSAVIT 311 ++F + Sbjct: 393 TQEFIDALF 401 >gi|328472443|gb|EGF43309.1| signal recognition particle-docking protein FtsY [Vibrio parahaemolyticus 10329] Length = 403 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 128/309 (41%), Positives = 198/309 (64%), Gaps = 1/309 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + S +++DD + EELE+ L+ +D+G+ Sbjct: 91 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTT 150 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+ L K D+ LY + E + ++L + +P + D S P+VIL+VGVNGV Sbjct: 151 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLDIDSSKTPYVILMVGVNGV 210 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 211 GKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 270 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N + LM + K++RV+K++D APH ++ LDA TG Sbjct: 271 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 330 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF Sbjct: 331 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFE 390 Query: 303 AKDFSAVIT 311 ++F + Sbjct: 391 TQEFIDALF 399 >gi|222150095|ref|YP_002551052.1| cell division particle [Agrobacterium vitis S4] gi|221737077|gb|ACM38040.1| cell division particle [Agrobacterium vitis S4] Length = 454 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 177/308 (57%), Positives = 233/308 (75%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 SW ++L G TS +L I+ + + R+LD+ EELEDLLI++D+GV A ++ Sbjct: 147 KQSWFQRLKAGLFRTSSQLTGQISALFTKRKLDEETLEELEDLLIQADLGVETAMRVTGT 206 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 L ++RY KDV+ + V ++ I K+L P++KP D +H+PHVILVVGVNG GKTT IG Sbjct: 207 LSSERYGKDVTGEDVTRIMAAEIVKVLKPVAKPLALDLNHKPHVILVVGVNGTGKTTTIG 266 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+ K+S +GLKVMLAAGDTFR+AAI+QLKIWADRT + F+ +++G+DAA LAY+AF++A Sbjct: 267 KLAAKLSGSGLKVMLAAGDTFRAAAIEQLKIWADRTGSTFIGTKLGADAAGLAYDAFEKA 326 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+K DVLIIDTAGRL N + LM + K++RVL +LDP APH+VLQ LDATTGQNA+ QV Sbjct: 327 KAEKSDVLIIDTAGRLQNKTELMDELEKIVRVLSKLDPDAPHTVLQTLDATTGQNAMNQV 386 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 E+F VAG GLIMTK+DGTARGG L+ I HK+PVYF+GVGEG++DLEPF A+DF+ Sbjct: 387 EIFRNVAGVNGLIMTKLDGTARGGILVAIAAKHKLPVYFIGVGEGVDDLEPFEAEDFARA 446 Query: 310 ITGCLDYG 317 I G G Sbjct: 447 IAGFGSSG 454 >gi|317494587|ref|ZP_07953000.1| signal recognition particle-docking protein FtsY [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917517|gb|EFV38863.1| signal recognition particle-docking protein FtsY [Enterobacteriaceae bacterium 9_2_54FAA] Length = 603 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 124/313 (39%), Positives = 193/313 (61%), Gaps = 2/313 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++ + +L + T L G + +++DD + EELE+ L+ +D+GV Sbjct: 292 EQERPTKEGFFARLKRSLLKTKQNLGSGFFGLFRGKKIDDDLFEELEEQLLIADVGVETT 351 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI++ L K++ LY + E + ++L + KP + P VIL+VGVNGV Sbjct: 352 SKIIKSLTEHASRKELKDAESLYGKLKEEMGEILSTVDKPLDVS-GRTPFVILMVGVNGV 410 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+++ G VMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 411 GKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQHTGADSASVI 470 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+A+ VDVL+ DTAGRL N + LM + K++RV+K+LD APH V+ +DA+TG Sbjct: 471 FDAIQAAKARNVDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTIDASTG 530 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F+ G TG+ +TK+DGTA+GG + + IP+ ++GVGEGI DL PF Sbjct: 531 QNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAVADQFGIPIRYIGVGEGIEDLRPFK 590 Query: 303 AKDFSAVITGCLD 315 A DF + D Sbjct: 591 ADDFIEALFARED 603 >gi|85373608|ref|YP_457670.1| signal recognition particle GTPase [Erythrobacter litoralis HTCC2594] gi|84786691|gb|ABC62873.1| signal recognition particle GTPase [Erythrobacter litoralis HTCC2594] Length = 304 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 142/303 (46%), Positives = 193/303 (63%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 +SW +L GF TS +L E +T +S+ LDD EE+ED LI SD+G A A +I E+L Sbjct: 1 MSWTERLFGGFKKTSDRLSENLTTAVSTATLDDATLEEVEDALIMSDLGPAAASRIREKL 60 Query: 71 LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 KR+ +S + + V++ I ++L P++KP RP VILV+GVNG GKTT I K Sbjct: 61 KEKRFGLQISERELKKAVADEIAEILRPVAKPLEITAFPRPQVILVIGVNGSGKTTTIAK 120 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+ + + +VMLAAGDTFR+AAI+QL WADR V G D A++ ++ K Sbjct: 121 LAHWLVEEDYEVMLAAGDTFRAAAIEQLATWADRVGVPIVKGPQGGDPASIVFDGVKAGT 180 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 + D L++DTAGRL N LM + K+ +VL RL+P APH V+ VLDAT GQNAL Q++ Sbjct: 181 DRGTDALVVDTAGRLQNKRELMDELAKIRKVLGRLNPEAPHDVILVLDATNGQNALSQID 240 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F VAG TGLIMTK+DGTARGG L+ + +P++ +GVGE I+DL PF + VI Sbjct: 241 VFKEVAGVTGLIMTKLDGTARGGVLVAAAEQYGLPIHAIGVGETIDDLRPFDPDLVAKVI 300 Query: 311 TGC 313 G Sbjct: 301 AGI 303 >gi|298293311|ref|YP_003695250.1| signal recognition particle-docking protein FtsY [Starkeya novella DSM 506] gi|296929822|gb|ADH90631.1| signal recognition particle-docking protein FtsY [Starkeya novella DSM 506] Length = 318 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 152/302 (50%), Positives = 210/302 (69%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + ++LT+G T+ L GITD+ + R+LD EELED+LIR+D+GV + +I E + Sbjct: 15 GFWKRLTQGLTRTASGLSTGITDLFTKRKLDATTLEELEDVLIRADLGVETSARIAEAVG 74 Query: 72 TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131 RY K + + V V+ I +L P++ P ++ +P V+L+VGVNG GKTT IGKL Sbjct: 75 KGRYDKGIDPEEVRNLVAAEIEAVLTPVAHPLAFNTGAKPFVLLMVGVNGSGKTTTIGKL 134 Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 + + G KV+LAAGDTFR+AAI+QLK+WADRT A V G+DAA +A++ +QA+ Sbjct: 135 ASTLRAQGKKVVLAAGDTFRAAAIEQLKVWADRTGAAIVARPPGADAAGVAFDGLQQARE 194 Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 DVLIIDTAGRL N + LMA + K++RV+K+ D APH+V+ LDAT GQNAL+QVE Sbjct: 195 VGADVLIIDTAGRLQNRAELMAELEKVVRVIKKQDASAPHAVVLTLDATVGQNALQQVEA 254 Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311 F VAG TGL+MTK+DGTARGG L+ I + +PV+ +G+GEGI+DL+PF A+DF+ I Sbjct: 255 FRRVAGVTGLVMTKLDGTARGGILVAIAAKYGLPVHMIGIGEGIDDLQPFAARDFARAIV 314 Query: 312 GC 313 G Sbjct: 315 GL 316 >gi|262040530|ref|ZP_06013771.1| signal recognition particle-docking protein FtsY [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329999134|ref|ZP_08303335.1| signal recognition particle-docking protein FtsY [Klebsiella sp. MS 92-3] gi|259042123|gb|EEW43153.1| signal recognition particle-docking protein FtsY [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328538428|gb|EGF64549.1| signal recognition particle-docking protein FtsY [Klebsiella sp. MS 92-3] Length = 517 Score = 312 bits (799), Expect = 5e-83, Method: Composition-based stats. Identities = 126/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 ++ ++ + +L + T L G + +++DD + EELE+ L+ +D+GV Sbjct: 203 LAQEQEKPTKEGFFARLKRSLLKTKQNLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 262 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +KI+ L K + LY + E + ++L + +P N + P VIL+VGV Sbjct: 263 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 321 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W R + + G+D+A Sbjct: 322 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 381 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+A+ VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA Sbjct: 382 SVIFDAIQAAKARHVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVDAPHEVMLTIDA 441 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL Sbjct: 442 STGQNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 501 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + D Sbjct: 502 PFNAGDFIEALFARED 517 >gi|332531762|ref|ZP_08407647.1| signal recognition particle receptor protein FtsY [Pseudoalteromonas haloplanktis ANT/505] gi|332038738|gb|EGI75180.1| signal recognition particle receptor protein FtsY [Pseudoalteromonas haloplanktis ANT/505] Length = 432 Score = 312 bits (799), Expect = 5e-83, Method: Composition-based stats. Identities = 123/301 (40%), Positives = 190/301 (63%), Gaps = 1/301 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 + +L KG T + + G I S +++DD + E+LE L+ +D+GV K+++ L Sbjct: 125 GFFSRLKKGLLKTRVNIGSGFASIFSGKKIDDELFEDLETQLLTADLGVDTTMKLIDRLT 184 Query: 72 TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 K + LY++ + + ML +P +P VIL+VGVNGVGKTT IGK Sbjct: 185 DAANRKQLKDGDALYELMKQEMAAMLKTAEQPLVISEDKKPFVILMVGVNGVGKTTTIGK 244 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 ++K+ + G VMLAAGDTFR+AA++QL++W +R S + G+D+A++ ++AF+ A+ Sbjct: 245 MAKQFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNSIPVIAQHTGADSASVVFDAFQAAK 304 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +DVLI DTAGRL N LM + K+ RV+K++DP APH V+ +DA TGQNA+ QV Sbjct: 305 ARNIDVLIADTAGRLQNKDNLMQELEKIARVMKKIDPDAPHEVMLTIDAGTGQNAISQVN 364 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 +F+ G TG+ ++K+DGTA+GG + + IP+ ++GVGEGI+DL F + DF + Sbjct: 365 LFNQCVGLTGITLSKLDGTAKGGVIFAVADKFNIPIRYIGVGEGIDDLRAFKSDDFIDAL 424 Query: 311 T 311 Sbjct: 425 F 425 >gi|253997119|ref|YP_003049183.1| signal recognition particle-docking protein FtsY [Methylotenera mobilis JLW8] gi|253983798|gb|ACT48656.1| signal recognition particle-docking protein FtsY [Methylotenera mobilis JLW8] Length = 336 Score = 312 bits (799), Expect = 5e-83, Method: Composition-based stats. Identities = 119/302 (39%), Positives = 184/302 (60%), Gaps = 3/302 (0%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70 LSW +L +G A T +L + I ++D V EELE +L+ SD+G+ Q +++++ Sbjct: 35 LSWTARLKQGLAKTRNQLGNQLASIFGGGKIDAEVYEELETILLTSDVGINATQHLLDDI 94 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + + + L + + + +L PL +P H+P +I++ GVNG GKTT IG Sbjct: 95 KGRVKRQSLDDTVQLKAALKDALSDLLSPLEQPLATS-KHQPFIIMLAGVNGAGKTTTIG 153 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+K+ G V++AAGDTFR+AA +QL++W +R + V + D AA+ ++A A Sbjct: 154 KLAKQFQSEGKSVLIAAGDTFRAAAREQLQVWGERNNVHVVA-QTSGDPAAVMFDAINSA 212 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +AK +D+++ DTAGRL LM I K+ RV+ + P APH VL VLDA TGQNA+ QV Sbjct: 213 RAKNIDIVLADTAGRLPTQMHLMDEIAKVKRVMDKALPGAPHEVLLVLDANTGQNAVSQV 272 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 ++F G TGL+++K+DGTA+GG + I IP+ ++G+GE I+DL PF A +F Sbjct: 273 KIFDDALGVTGLVLSKLDGTAKGGVIAAIAQARPIPIRYIGIGEAIDDLRPFNANEFIDA 332 Query: 310 IT 311 + Sbjct: 333 ML 334 >gi|291619278|ref|YP_003522020.1| FtsY [Pantoea ananatis LMG 20103] gi|291154308|gb|ADD78892.1| FtsY [Pantoea ananatis LMG 20103] Length = 637 Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats. Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 ++ ++ + +L + T L G + +++DD + EELE+ L+ +D+GV Sbjct: 323 VTQEQDRPTKEGFFARLKRSLVKTRQNLGSGFIGLFRGKKIDDELFEELEEQLLIADVGV 382 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 ++I+ L K + LY + + + +L + +P N + P VIL+VGV Sbjct: 383 ETTRRIITSLTQHADRKQLRDAEALYGLLKTEMADILAKVEEPLNVE-GKTPFVILMVGV 441 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W R + V G+D+A Sbjct: 442 NGVGKTTTIGKLARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNISVVAQHTGADSA 501 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+++ VDVLI DTAGRL N S LM + K+ RV+K+LD APH V+ +DA Sbjct: 502 SVIFDAIQAAKSRGVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDEQAPHEVMLTIDA 561 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++FH G TG+ +TK+DGTA+GG + + IP+ ++GVGEGI DL Sbjct: 562 STGQNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGEGIEDLR 621 Query: 300 PFVAKDFSAVITGCLD 315 PF A+DF + D Sbjct: 622 PFKAEDFIEALFARED 637 >gi|301062995|ref|ZP_07203560.1| signal recognition particle-docking protein FtsY [delta proteobacterium NaphS2] gi|300442876|gb|EFK07076.1| signal recognition particle-docking protein FtsY [delta proteobacterium NaphS2] Length = 353 Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats. Identities = 123/312 (39%), Positives = 184/312 (58%), Gaps = 2/312 (0%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGV 60 KV + ++L G T I ++ + ++ + + + +ELE++L SDIGV Sbjct: 40 KTNKVDNNEEGVFKRLRHGLTKTRSSFTGRIDNLFAGKKEITESLMDELEEILFTSDIGV 99 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 A Q++++ K + + L + + I +L S + P VI+V GV Sbjct: 100 ATTQRLLDAARENVTRKALRDPQKLKAILRDHIFSLLNQDSVEHTPSNAEGPLVIMVAGV 159 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGK++ + G VML A DTFR+AA++QL IW +R A V + G+D + Sbjct: 160 NGVGKTTSIGKIANRFRREGKTVMLVAADTFRAAAVEQLTIWGERVGATVVKQDTGADPS 219 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+A++A A ++K+DV+++DTAGRLH + LMA + K+ RV+ R P APH V VLDA Sbjct: 220 AVAFDAMTAAISRKIDVVLVDTAGRLHTQTNLMAELRKVNRVIGRKLPGAPHEVWLVLDA 279 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TTGQNA+ Q E F G TG+I+TK+DGTA+GG +I I +IP+ F+G+GE ++DL Sbjct: 280 TTGQNAISQAEAFQKALGLTGIILTKLDGTAKGGVVIGISSEFQIPIRFIGIGEQVDDLR 339 Query: 300 PFVAKDFSAVIT 311 PF +F I Sbjct: 340 PFDPGEFVRAIF 351 >gi|298369773|ref|ZP_06981090.1| signal recognition particle-docking protein FtsY [Neisseria sp. oral taxon 014 str. F0314] gi|298282330|gb|EFI23818.1| signal recognition particle-docking protein FtsY [Neisseria sp. oral taxon 014 str. F0314] Length = 410 Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats. Identities = 117/301 (38%), Positives = 186/301 (61%), Gaps = 2/301 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71 SW +L +G A + ++ + + + ++D+ + EELE +LI SD+G+ + +++++ Sbjct: 110 SWAARLRQGLAKSRNQMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDVR 169 Query: 72 TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130 + K + L + E ++ ++ PL KP + P VI++ G+NG GKTT IGK Sbjct: 170 NRVSLKGLKDGNELRGALKEAVYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGK 229 Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 L+K G V+LAAGDTFR+AA +QL+ W +R + + S+ D+AA+ ++A + A+ Sbjct: 230 LAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDAVQAAK 288 Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA GQNA+ QV+ Sbjct: 289 ARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVK 348 Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310 F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL PF A+ F + Sbjct: 349 AFDEALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFNARAFVDAL 408 Query: 311 T 311 Sbjct: 409 L 409 >gi|300721685|ref|YP_003710961.1| cell division protein [Xenorhabdus nematophila ATCC 19061] gi|297628178|emb|CBJ88733.1| cell division protein: membrane binding (N-terminal); GTPase domain (C-terminal) [Xenorhabdus nematophila ATCC 19061] Length = 465 Score = 311 bits (798), Expect = 6e-83, Method: Composition-based stats. Identities = 131/316 (41%), Positives = 194/316 (61%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 +S ++ + +L + T L G + +++DD + EELE+ L+ +D+GV Sbjct: 151 LSKEQERPSKEGFFTRLKRSLVKTRQNLGSGFLSLFRGKKIDDELFEELEEQLLIADVGV 210 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 KI+ L K++ LY + E + +L+ + KP + P+VIL+VGV Sbjct: 211 ETTSKIITSLTAHASRKELKDAEALYSKLKEEMSDILVKVDKPLEIE-GKSPYVILMVGV 269 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W DR V G+D A Sbjct: 270 NGVGKTTTIGKLARQYQSQGKSVMLAAGDTFRAAAVEQLQVWGDRNKIPVVAQHTGADPA 329 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+AK VD+LI DTAGRL N S LM + K++RV+K+LD APH ++ LDA Sbjct: 330 SVIFDAIQSAKAKGVDILIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEIMLTLDA 389 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++FH G TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL Sbjct: 390 STGQNAVSQAKLFHEAVGLTGISLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLR 449 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + D Sbjct: 450 PFKADDFIEALFARED 465 >gi|134279674|ref|ZP_01766386.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 305] gi|134248874|gb|EBA48956.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 305] Length = 476 Score = 311 bits (798), Expect = 7e-83, Method: Composition-based stats. Identities = 127/304 (41%), Positives = 184/304 (60%), Gaps = 7/304 (2%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + ++ Sbjct: 179 KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGA 234 Query: 70 LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L K A ++ + + D + L+ ++L PL K + P V+++ GVNG GKTT I Sbjct: 235 LREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 293 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+K + V+LAAGDTFR+AA +QL IW +R + V + D AA+ ++A Sbjct: 294 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 352 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL Q Sbjct: 353 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 412 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 V+ F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ Sbjct: 413 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 472 Query: 309 VITG 312 + G Sbjct: 473 ALLG 476 >gi|238784416|ref|ZP_04628426.1| Cell division protein ftsY [Yersinia bercovieri ATCC 43970] gi|238714708|gb|EEQ06710.1| Cell division protein ftsY [Yersinia bercovieri ATCC 43970] Length = 519 Score = 311 bits (798), Expect = 8e-83, Method: Composition-based stats. Identities = 127/315 (40%), Positives = 194/315 (61%), Gaps = 2/315 (0%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + ++ + +L + T L G + S +++DD + EELE+ L+ +D+GV Sbjct: 206 AQEQERPTKEGFFARLKRSLLKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVE 265 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 +KI+ L K + LY + E + ++L + KP + + P VIL+VGVN Sbjct: 266 TTRKIITSLTEHASRKQLKDAEALYGKLKEEMSEILSTVDKPLDVSGKN-PFVILMVGVN 324 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W +R V G+D+A+ Sbjct: 325 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSAS 384 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++A + A+A+ +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+ Sbjct: 385 VIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDAS 444 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNA+ Q ++F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL P Sbjct: 445 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRP 504 Query: 301 FVAKDFSAVITGCLD 315 F A DF + D Sbjct: 505 FKADDFIEALFARED 519 >gi|156972628|ref|YP_001443535.1| signal recognition particle GTPase [Vibrio harveyi ATCC BAA-1116] gi|156524222|gb|ABU69308.1| hypothetical protein VIBHAR_00280 [Vibrio harveyi ATCC BAA-1116] Length = 408 Score = 311 bits (797), Expect = 8e-83, Method: Composition-based stats. Identities = 128/309 (41%), Positives = 199/309 (64%), Gaps = 1/309 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + S +++DD + EELE+ L+ +D+G+ Sbjct: 96 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMETT 155 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+ L K D+ LY + E + ++L + +P D S P+VIL+VGVNGV Sbjct: 156 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILAKVEQPLEIDSSKTPYVILMVGVNGV 215 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ + G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 216 GKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 275 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N + LM + K++RV+K++D APH ++ LDA TG Sbjct: 276 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 335 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL PF Sbjct: 336 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFE 395 Query: 303 AKDFSAVIT 311 ++F + Sbjct: 396 TQEFIDALF 404 >gi|332763553|gb|EGJ93792.1| signal recognition particle-docking protein FtsY [Shigella flexneri 2930-71] gi|332997161|gb|EGK16777.1| signal recognition particle-docking protein FtsY [Shigella flexneri K-218] Length = 516 Score = 311 bits (797), Expect = 9e-83, Method: Composition-based stats. Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 ++ ++ + +L + T L G + +++DD + EELE+ L+ +D+GV Sbjct: 202 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 261 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +KI+ L K + LY + E + ++L + +P N + P VIL+VGV Sbjct: 262 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-DKTPFVILMVGV 320 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W R + + G+D+A Sbjct: 321 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 380 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+A+ +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA Sbjct: 381 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 440 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL Sbjct: 441 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 500 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + D Sbjct: 501 PFKADDFIEALFARED 516 >gi|268590802|ref|ZP_06125023.1| cell division protein [Providencia rettgeri DSM 1131] gi|291313582|gb|EFE54035.1| cell division protein [Providencia rettgeri DSM 1131] Length = 627 Score = 311 bits (797), Expect = 9e-83, Method: Composition-based stats. Identities = 131/311 (42%), Positives = 195/311 (62%), Gaps = 2/311 (0%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 ++ + + +L KG T L G + S +++DD + EELE+ L+ +D+GV Sbjct: 314 PTEQEKPKKEGFFARLKKGLLKTRQNLGSGFFGLFSGKKIDDDLFEELEEQLLIADVGVD 373 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 +KI++ L K++ LY + E + +L + KP + +P+VIL+VGVN Sbjct: 374 TTRKIIDNLTAHASRKELKDAEALYGKLREEMSDILAKVDKPLVIE-DKKPYVILMVGVN 432 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W +R V G+D A+ Sbjct: 433 GVGKTTTIGKLARQYQSEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVVAQHTGADPAS 492 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++A + AQAK VDVLI DTAGRL N S LM + K++RV+K+LD +APH ++ LDA+ Sbjct: 493 VIFDAIQSAQAKGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDENAPHEIMLTLDAS 552 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNA+ Q ++F G TG+ +TK+DGTA+GG + I IP+ ++G+GEGI DL P Sbjct: 553 TGQNAVSQAKLFDDAVGLTGITLTKLDGTAKGGVIFSIADQFGIPIRYIGIGEGIEDLRP 612 Query: 301 FVAKDFSAVIT 311 F A DF + Sbjct: 613 FKADDFIEALF 623 >gi|238896927|ref|YP_002921672.1| cell division protein FtsY [Klebsiella pneumoniae NTUH-K2044] gi|238549254|dbj|BAH65605.1| cell division membrane protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 507 Score = 311 bits (797), Expect = 9e-83, Method: Composition-based stats. Identities = 126/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 ++ ++ + +L + T L G + +++DD + EELE+ L+ +D+GV Sbjct: 193 LAQEQEKPTKEGFFARLKRSLLKTKQNLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 252 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +KI+ L K + LY + E + ++L + +P N + P VIL+VGV Sbjct: 253 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 311 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W R + + G+D+A Sbjct: 312 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 371 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+A+ VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA Sbjct: 372 SVIFDAIQAAKARHVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVDAPHEVMLTIDA 431 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL Sbjct: 432 STGQNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 491 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + D Sbjct: 492 PFNAGDFIEALFARED 507 >gi|152972338|ref|YP_001337484.1| cell division protein FtsY [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957187|gb|ABR79217.1| cell division membrane protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 507 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 126/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 ++ ++ + +L + T L G + +++DD + EELE+ L+ +D+GV Sbjct: 193 LAQEQEKPTKEGFFARLKRSLLKTKQNLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 252 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +KI+ L K + LY + E + ++L + +P N + P VIL+VGV Sbjct: 253 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 311 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W R + + G+D+A Sbjct: 312 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 371 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+A+ VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA Sbjct: 372 SVIFDAIQAAKARHVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVDAPHEVMLTIDA 431 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL Sbjct: 432 STGQNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 491 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + D Sbjct: 492 PFNAGDFIEALFARED 507 >gi|288933155|ref|YP_003437214.1| signal recognition particle-docking protein FtsY [Klebsiella variicola At-22] gi|288887884|gb|ADC56202.1| signal recognition particle-docking protein FtsY [Klebsiella variicola At-22] Length = 507 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 126/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 ++ ++ + +L + T L G + +++DD + EELE+ L+ +D+GV Sbjct: 193 LAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 252 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +KI+ L K + LY + E + ++L + +P N + P VIL+VGV Sbjct: 253 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 311 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W R + + G+D+A Sbjct: 312 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 371 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+A+ VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA Sbjct: 372 SVIFDAIQAAKARHVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVDAPHEVMLTIDA 431 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL Sbjct: 432 STGQNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 491 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + D Sbjct: 492 PFNAGDFIEALFARED 507 >gi|227358349|ref|ZP_03842690.1| cell division protein FtsY [Proteus mirabilis ATCC 29906] gi|227161685|gb|EEI46722.1| cell division protein FtsY [Proteus mirabilis ATCC 29906] Length = 401 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 133/309 (43%), Positives = 192/309 (62%), Gaps = 2/309 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++ + + +L KG T L G + +++DD + EELE+ L+ +D+G+ Sbjct: 90 EQERPKKEGFFSRLKKGLLKTRQNLGSGFMGLFRGKKIDDELFEELEEQLLIADVGMDTT 149 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+ L KD+ LY + E + +L + KP N + +P VIL+VGVNGV Sbjct: 150 SKIINSLTQHASRKDLKDAESLYGKLREEMGDILNKVDKPLNIE-GKKPFVILMVGVNGV 208 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+++ G VMLAAGDTFR+AA++QL++W +R + G+D A++ Sbjct: 209 GKTTTIGKLARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADPASVI 268 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + AQAK VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ LDA+TG Sbjct: 269 FDAIQSAQAKGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTLDASTG 328 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F+ G TGL +TK+DGTA+GG + I IP+ ++GVGEGI DL PF Sbjct: 329 QNAVSQAKLFNETVGLTGLTLTKLDGTAKGGVIFSIADQFGIPIRYIGVGEGIEDLRPFK 388 Query: 303 AKDFSAVIT 311 A DF + Sbjct: 389 ADDFIEALF 397 >gi|333012439|gb|EGK31820.1| signal recognition particle-docking protein FtsY [Shigella flexneri K-304] Length = 516 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 ++ ++ + +L + T L G + +++DD + EELE+ L+ +D+GV Sbjct: 202 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 261 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +KI+ L K + LY + E + ++L + +P N + P VIL+VGV Sbjct: 262 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-DKTPFVILMVGV 320 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W R + + G+D+A Sbjct: 321 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 380 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+A+ +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA Sbjct: 381 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 440 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL Sbjct: 441 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 500 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + D Sbjct: 501 PFKADDFIEALFARED 516 >gi|255065474|ref|ZP_05317329.1| signal recognition particle-docking protein FtsY [Neisseria sicca ATCC 29256] gi|255050299|gb|EET45763.1| signal recognition particle-docking protein FtsY [Neisseria sicca ATCC 29256] Length = 480 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 118/311 (37%), Positives = 186/311 (59%), Gaps = 2/311 (0%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 S L W +L +G + K+ + + + ++D+ + EELE +LI SD+G+ Sbjct: 170 SEPSETEPKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGME 229 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + +++++ + K + L + E ++ ++ PL KP + P VI++ G+N Sbjct: 230 ATEYLMKDVRNRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPDTKEPFVIMLAGIN 289 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+K G V+LAAGDTFR+AA +QL+ W +R + + S+ D+AA Sbjct: 290 GAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAA 348 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++A + A+A+ +D+++ DTAGRL LM I K+ RVL++ P APH ++ VLDA Sbjct: 349 VCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDAN 408 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQNA+ QV+ F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL P Sbjct: 409 IGQNAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRP 468 Query: 301 FVAKDFSAVIT 311 F A+ F + Sbjct: 469 FDARAFVDALL 479 >gi|238750712|ref|ZP_04612211.1| Cell division protein ftsY [Yersinia rohdei ATCC 43380] gi|238711102|gb|EEQ03321.1| Cell division protein ftsY [Yersinia rohdei ATCC 43380] Length = 555 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 128/313 (40%), Positives = 194/313 (61%), Gaps = 2/313 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++ + +L + T L G + S +++DD + EELE+ L+ +D+GV Sbjct: 244 EQERPTKEGFFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETT 303 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 +KI+ L K + LY + E + ++L + KP + + P+VIL+VGVNGV Sbjct: 304 RKIITSLTEHASRKQLKDAEALYGKLKEEMSEILSKVDKPLDVSGKN-PYVILMVGVNGV 362 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+++ G VMLAAGDTFR+AA++QL++W +R V G+D+A++ Sbjct: 363 GKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVI 422 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+A+ VDVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TG Sbjct: 423 FDAIQAAKARGVDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTG 482 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF Sbjct: 483 QNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFK 542 Query: 303 AKDFSAVITGCLD 315 A DF + D Sbjct: 543 ADDFIEALFARED 555 >gi|238793545|ref|ZP_04637169.1| Cell division protein ftsY [Yersinia intermedia ATCC 29909] gi|238727135|gb|EEQ18665.1| Cell division protein ftsY [Yersinia intermedia ATCC 29909] Length = 505 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 128/313 (40%), Positives = 193/313 (61%), Gaps = 2/313 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++ + +L + T L G + S +++DD + EELE+ L+ +D+GV Sbjct: 194 EQERPTKEGFFARLKRSLLKTKQNLGSGFLGLFSGKKIDDDLFEELEEQLLIADVGVETT 253 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 +KI+ L K + LY + E + ++L + KP + + P VIL+VGVNGV Sbjct: 254 RKIITSLTEHASRKQLKDAEALYGKLKEEMSEILSKVDKPLDVSGKN-PFVILMVGVNGV 312 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+++ G VMLAAGDTFR+AA++QL++W DR V G+D+A++ Sbjct: 313 GKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNKIAVVAQHTGADSASVI 372 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+A+ +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+TG Sbjct: 373 FDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTG 432 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL PF Sbjct: 433 QNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFK 492 Query: 303 AKDFSAVITGCLD 315 A DF + D Sbjct: 493 ADDFIEALFARED 505 >gi|290511957|ref|ZP_06551325.1| cell division protein FtsY [Klebsiella sp. 1_1_55] gi|289775747|gb|EFD83747.1| cell division protein FtsY [Klebsiella sp. 1_1_55] Length = 504 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 126/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 ++ ++ + +L + T L G + +++DD + EELE+ L+ +D+GV Sbjct: 190 LAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 249 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +KI+ L K + LY + E + ++L + +P N + P VIL+VGV Sbjct: 250 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 308 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W R + + G+D+A Sbjct: 309 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 368 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+A+ VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA Sbjct: 369 SVIFDAIQAAKARHVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVDAPHEVMLTIDA 428 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL Sbjct: 429 STGQNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 488 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + D Sbjct: 489 PFNAGDFIEALFARED 504 >gi|90023237|ref|YP_529064.1| signal recognition particle-docking protein FtsY [Saccharophagus degradans 2-40] gi|89952837|gb|ABD82852.1| signal recognition particle-docking protein FtsY [Saccharophagus degradans 2-40] Length = 375 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 137/319 (42%), Positives = 208/319 (65%), Gaps = 6/319 (1%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVA 61 + SE L ++ +G + TS + G+++++ ++ +DD + EE+E LL+ +D+G+ Sbjct: 57 EPEPQSEKLGVFARIKRGLSRTSNQFANGLSNLLLGKKAIDDELLEEIETLLLMADVGMD 116 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSH----RPHVILV 116 I+E+L + K ++ LYD + E + K+L + PF+ + SH P+VILV Sbjct: 117 ATTDIIEDLTDRVARKQLNDSEALYDALRESLAKLLQQVEVPFDLEQSHAPLPSPYVILV 176 Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176 VGVNGVGKTT IGKL+K+ + G V+LAAGDTFR+AA++QL++W +R + G+ Sbjct: 177 VGVNGVGKTTTIGKLAKRYQNQGKSVILAAGDTFRAAAVEQLQVWGERNKVPVIAQHSGA 236 Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236 D+A++ ++A + AQA+ +DVLI DTAGRLHN S LM + K+ RV+ +LD APH VL V Sbjct: 237 DSASVIFDAVQSAQARGIDVLIADTAGRLHNKSNLMEELAKVKRVMGKLDNTAPHEVLLV 296 Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296 LDA TGQNA+ Q + F A TGL++TK+DGTA+GG + + H IPV ++GVGE ++ Sbjct: 297 LDAGTGQNAVSQADHFKKAADVTGLVLTKLDGTAKGGIIFALSKKHNIPVRYIGVGESVD 356 Query: 297 DLEPFVAKDFSAVITGCLD 315 DL+PF AK F+ + D Sbjct: 357 DLQPFDAKKFTEALFSTSD 375 >gi|148261479|ref|YP_001235606.1| signal recognition particle-docking protein FtsY [Acidiphilium cryptum JF-5] gi|326404963|ref|YP_004285045.1| signal recognition particle-docking protein FtsY [Acidiphilium multivorum AIU301] gi|146403160|gb|ABQ31687.1| signal recognition particle-docking protein FtsY [Acidiphilium cryptum JF-5] gi|325051825|dbj|BAJ82163.1| signal recognition particle-docking protein FtsY [Acidiphilium multivorum AIU301] Length = 312 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 135/303 (44%), Positives = 202/303 (66%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 +L ++ +L G ++ KL GITD + R+LDD EELEDLLI +D+G A A +++ Sbjct: 3 ALGFLSRLKSGLTRSTQKLAAGITDTFTKRKLDDAALEELEDLLITADLGPAAAARVIRA 62 Query: 70 LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 R+ +DVS + ++E + K+L P+++P D S P VIL+VGVNG GKTT IG Sbjct: 63 FRRTRFGQDVSAPEIRASLAEEVAKILAPVAQPLAIDRSKNPFVILMVGVNGTGKTTTIG 122 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL++ ++AG + +L AGDTFR+AA++QL++W +RT A + +D A LA++A +A Sbjct: 123 KLAQSYAEAGARPLLVAGDTFRAAAVEQLQVWGERTGAPVMTGPANADPAGLAFDAIARA 182 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 + D+++IDTAGRLHN + LM + K+IRV+++ D APH+VL LDATTGQNA+ QV Sbjct: 183 RRDGHDIVLIDTAGRLHNKAALMEELRKIIRVIRKQDETAPHAVLLTLDATTGQNAIAQV 242 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 F + TGLI+TK+DG+AR G ++ + T +P++ +GVGE DL PF A +F+ Sbjct: 243 ATFKEMVDLTGLIVTKLDGSARAGVVVALAETAALPIHAVGVGEQAADLRPFDATEFARA 302 Query: 310 ITG 312 +TG Sbjct: 303 LTG 305 >gi|307294714|ref|ZP_07574556.1| signal recognition particle-docking protein FtsY [Sphingobium chlorophenolicum L-1] gi|306879188|gb|EFN10406.1| signal recognition particle-docking protein FtsY [Sphingobium chlorophenolicum L-1] Length = 312 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 144/307 (46%), Positives = 197/307 (64%) Query: 6 VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65 + SW +L G TS KL E +T + + LD+ +E+E+ LI SD+G A+A + Sbjct: 1 MTEPGTSWRDRLFGGLKRTSDKLGENLTGLFTKAALDEQTLDEIEEALIVSDLGPAMAAR 60 Query: 66 IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 + + L RY ++++ + ++E I K L P+++P + RP VILV+GVNG GKT Sbjct: 61 VRDRLSEGRYNRELTEDYLREIIAEEIEKTLAPVARPLEIEAFPRPQVILVIGVNGSGKT 120 Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185 T I KL+ + VMLAAGDTFR+AAI QLK+WADR V + G DAA + ++A Sbjct: 121 TTIAKLANNFLEQDYGVMLAAGDTFRAAAIGQLKVWADRLGIPIVAGKEGGDAAGIVFDA 180 Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 KQA A +DVLI+DTAGRL N + LM + K+ RVL RL+P APH V+ VLDATTGQNA Sbjct: 181 VKQATATGIDVLIVDTAGRLQNKTELMDELAKIRRVLGRLNPAAPHDVVLVLDATTGQNA 240 Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305 L Q+E+F VA TGL+MTK+DGTARGG L+ +++P++ +GVGE I DL PF D Sbjct: 241 LSQIEVFKEVAQVTGLVMTKLDGTARGGVLVAAAEKYRLPIHAIGVGEKIEDLRPFDPGD 300 Query: 306 FSAVITG 312 + I G Sbjct: 301 MARAIAG 307 >gi|218889114|ref|YP_002437978.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa LESB58] gi|218769337|emb|CAW25097.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa LESB58] Length = 456 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 125/302 (41%), Positives = 187/302 (61%), Gaps = 2/302 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEEL 70 + +L +G + TS + EG+ + R+ D + + L+ +D+GV IV+ L Sbjct: 149 GFFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL 208 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K+++ LY + E + +L P+ +P D + P+VILVVGVNGVGKTT IG Sbjct: 209 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 268 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + A Sbjct: 269 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 328 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q Sbjct: 329 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 388 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A F Sbjct: 389 KQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQA 448 Query: 310 IT 311 + Sbjct: 449 LF 450 >gi|167463677|ref|ZP_02328766.1| signal recognition particle-docking protein FtsY [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382558|ref|ZP_08056438.1| signal recognition particle-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153474|gb|EFX45879.1| signal recognition particle-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 335 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 128/320 (40%), Positives = 194/320 (60%), Gaps = 2/320 (0%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVA 61 + +++++ + K +G + T E I D+ S +++D+G EELE++LI +D+GV Sbjct: 8 KESISNKTEAVTNKFKEGLSKTRDVFVERIEDLFSTRKKVDEGFYEELEEILISADVGVN 67 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVN 120 +++++L + + + VL V L+ K + + VIL VGVN Sbjct: 68 TVMELIDDLRDEVRKRKIEDPGVLQPVLSEKLINLLETGKDAELNLAGEGLSVILFVGVN 127 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT IGK++ + G KVMLAAGDTFR+ AI+QL+ W +R + + GSD AA Sbjct: 128 GVGKTTTIGKMAHMLKSQGKKVMLAAGDTFRAGAIEQLETWGERVGVEVIKQHSGSDPAA 187 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++A + A+ + +DVL+ DTAGRL N LM + K+ RV++R P APH VL VLDAT Sbjct: 188 VMFDALQAAKRRGMDVLLCDTAGRLQNKVNLMEELNKIYRVIRREIPEAPHEVLLVLDAT 247 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNAL Q ++F G TGL++TK+DGTA+GG ++ I IPV F+G+GE ++DL+ Sbjct: 248 TGQNALTQAKLFGDKTGLTGLVLTKLDGTAKGGIVVAIRQELDIPVKFVGLGEKMDDLQK 307 Query: 301 FVAKDFSAVITGCLDYGEEK 320 F ++ F + G EEK Sbjct: 308 FDSEQFVHALFGKWIAEEEK 327 >gi|206578548|ref|YP_002236165.1| cell division protein FtsY [Klebsiella pneumoniae 342] gi|206567606|gb|ACI09382.1| cell division protein FtsY [Klebsiella pneumoniae 342] Length = 507 Score = 310 bits (795), Expect = 1e-82, Method: Composition-based stats. Identities = 126/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 ++ ++ + +L + T L G + +++DD + EELE+ L+ +D+GV Sbjct: 193 LAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 252 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +KI+ L K + LY + E + ++L + +P N + P VIL+VGV Sbjct: 253 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 311 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W R + + G+D+A Sbjct: 312 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 371 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+A+ VDVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA Sbjct: 372 SVIFDAIQAAKARHVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVDAPHEVMLTIDA 431 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL Sbjct: 432 STGQNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 491 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + D Sbjct: 492 PFNAGDFIEALFARED 507 >gi|260771642|ref|ZP_05880562.1| signal recognition particle receptor protein FtsY [Vibrio metschnikovii CIP 69.14] gi|260613419|gb|EEX38618.1| signal recognition particle receptor protein FtsY [Vibrio metschnikovii CIP 69.14] Length = 388 Score = 310 bits (795), Expect = 1e-82, Method: Composition-based stats. Identities = 127/309 (41%), Positives = 197/309 (63%), Gaps = 1/309 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ S S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ Sbjct: 76 QEQEKPSESFFVRLKRSLSRTKANIGAGFFGLFQGKKIDDQLFEELEEQLLMADVGMETT 135 Query: 64 QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+ L K + + LY + + + +ML + KP D P+VIL+VGVNGV Sbjct: 136 VKIITSLTEKASRQQLRDGEALYALLKQEMAEMLAKVEKPLQIDSQTMPYVILMVGVNGV 195 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 196 GKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNHVPVIAQHTGADSASVI 255 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ +DV+I DTAGRL N + LM + K++RV+K++DP APH ++ LDA TG Sbjct: 256 YDAIEAAKARGIDVVIADTAGRLQNKANLMEELKKIVRVMKKIDPQAPHEIMLTLDAGTG 315 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F A TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI+DL PFV Sbjct: 316 QNAISQAKLFSQAAPLTGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEGIDDLRPFV 375 Query: 303 AKDFSAVIT 311 ++F + Sbjct: 376 TQEFIDALF 384 >gi|270264287|ref|ZP_06192554.1| hypothetical protein SOD_g02240 [Serratia odorifera 4Rx13] gi|270041936|gb|EFA15033.1| hypothetical protein SOD_g02240 [Serratia odorifera 4Rx13] Length = 525 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 126/316 (39%), Positives = 195/316 (61%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 ++ ++ + +L + T L G + +++DD + EELE+ L+ +D+GV Sbjct: 211 VNQEQERPTKEGFFARLKRSLVKTKQNLGSGFIGLFRGKKIDDDLFEELEEQLLIADVGV 270 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 KI+ L K + LY + E + ++L + +P + + P+VIL+VGV Sbjct: 271 ETTSKIITSLTQHASRKQLKDAEALYGKLKEEMSEILTKVEQPLDVGGKN-PYVILMVGV 329 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W +R V G+D+A Sbjct: 330 NGVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNRIPVVAQHTGADSA 389 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ Y+A + A+A+ +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA Sbjct: 390 SVIYDAVQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDDQAPHEVMLTLDA 449 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++F+ G TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL Sbjct: 450 STGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLR 509 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + D Sbjct: 510 PFKADDFIEALFARED 525 >gi|107099358|ref|ZP_01363276.1| hypothetical protein PaerPA_01000370 [Pseudomonas aeruginosa PACS2] Length = 454 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 125/302 (41%), Positives = 187/302 (61%), Gaps = 2/302 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEEL 70 + +L +G + TS + EG+ + R+ D + + L+ +D+GV IV+ L Sbjct: 147 GFFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL 206 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K+++ LY + E + +L P+ +P D + P+VILVVGVNGVGKTT IG Sbjct: 207 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 266 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + A Sbjct: 267 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 326 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q Sbjct: 327 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 386 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A F Sbjct: 387 KQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQA 446 Query: 310 IT 311 + Sbjct: 447 LF 448 >gi|254237391|ref|ZP_04930714.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa C3719] gi|126169322|gb|EAZ54833.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa C3719] Length = 456 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 125/302 (41%), Positives = 187/302 (61%), Gaps = 2/302 (0%) Query: 12 SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEEL 70 + +L +G + TS + EG+ + R+ D + + L+ +D+GV IV+ L Sbjct: 149 GFFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL 208 Query: 71 LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129 + K+++ LY + E + +L P+ +P D + P+VILVVGVNGVGKTT IG Sbjct: 209 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 268 Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 KL+KK+ G KVMLAAGDTFR+AA++QL++W +R + G+D+A++ ++A + A Sbjct: 269 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 328 Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249 +A+ +DVLI DTAGRLH LM + K+ RV+ +LD APH VL VLDA TGQNA+ Q Sbjct: 329 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 388 Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309 + F+ TGL +TK+DGTA+GG + + +P+ ++GVGEGI+DL F A F Sbjct: 389 KQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQA 448 Query: 310 IT 311 + Sbjct: 449 LF 450 >gi|238798003|ref|ZP_04641492.1| Cell division protein ftsY [Yersinia mollaretii ATCC 43969] gi|238718106|gb|EEQ09933.1| Cell division protein ftsY [Yersinia mollaretii ATCC 43969] Length = 534 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 127/315 (40%), Positives = 194/315 (61%), Gaps = 2/315 (0%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 + ++ + +L + T L G + S +++DD + EELE+ L+ +D+GV Sbjct: 221 AQEQERPTKEGFFARLKRSLLKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVE 280 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 +KI+ L K + LY + E + ++L + KP + + P VIL+VGVN Sbjct: 281 TTRKIITSLTEHASRKQLKDAEALYGKLKEEMSEILSTVDKPLDVSGKN-PFVILMVGVN 339 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 GVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W +R V G+D+A+ Sbjct: 340 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSAS 399 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++A + A+A+ +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA+ Sbjct: 400 VIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDAS 459 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 TGQNA+ Q ++F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL P Sbjct: 460 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRP 519 Query: 301 FVAKDFSAVITGCLD 315 F A DF + D Sbjct: 520 FKADDFIEALFARED 534 >gi|238755241|ref|ZP_04616586.1| Cell division protein ftsY [Yersinia ruckeri ATCC 29473] gi|238706582|gb|EEP98954.1| Cell division protein ftsY [Yersinia ruckeri ATCC 29473] Length = 528 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 127/316 (40%), Positives = 196/316 (62%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 ++ ++ + +L + T L G + S +++DD + EELE+ L+ +D+GV Sbjct: 214 VAQEQERPTKEGFFARLKRSLLKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGV 273 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +KI+ L K + LY + E + ++L + KP + +P+VIL+VGV Sbjct: 274 ETTRKIIASLTEHASRKQLKDAEALYGKLKEEMSEILAKVDKPLDVS-GKKPYVILMVGV 332 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W +R V G+D+A Sbjct: 333 NGVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSA 392 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+A+ +DVL+ DTAGRL N + LM + K++RV+K+LD APH V+ LDA Sbjct: 393 SVIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDA 452 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++F+ G TG+ +TK+DGTA+GG + I IP+ ++GVGEGI DL Sbjct: 453 STGQNAVSQAKLFNETVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLR 512 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + D Sbjct: 513 PFKADDFIEALFARED 528 >gi|323154303|gb|EFZ40506.1| signal recognition particle-docking protein FtsY [Escherichia coli EPECa14] Length = 527 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 ++ ++ + +L + T L G + +++DD + EELE+ L+ +D+GV Sbjct: 213 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 272 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +KI+ L K + LY + E + ++L + +P N + P VIL+VGV Sbjct: 273 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 331 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W R + + G+D+A Sbjct: 332 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 391 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+A+ +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA Sbjct: 392 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 451 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL Sbjct: 452 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 511 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + D Sbjct: 512 PFKADDFIEALFARED 527 >gi|298382791|ref|ZP_06992386.1| cell division protein FtsY [Escherichia coli FVEC1302] gi|298276627|gb|EFI18145.1| cell division protein FtsY [Escherichia coli FVEC1302] Length = 527 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 ++ ++ + +L + T L G + +++DD + EELE+ L+ +D+GV Sbjct: 213 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 272 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +KI+ L K + LY + E + ++L + +P N + P VIL+VGV Sbjct: 273 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 331 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W R + + G+D+A Sbjct: 332 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 391 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+A+ +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA Sbjct: 392 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 451 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL Sbjct: 452 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 511 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + D Sbjct: 512 PFKADDFIEALFARED 527 >gi|67643445|ref|ZP_00442191.1| signal recognition particle-docking protein FtsY [Burkholderia mallei GB8 horse 4] gi|121600561|ref|YP_991446.1| signal recognition particle-docking protein FtsY [Burkholderia mallei SAVP1] gi|124383927|ref|YP_001027477.1| signal recognition particle-docking protein FtsY [Burkholderia mallei NCTC 10229] gi|126448883|ref|YP_001082444.1| signal recognition particle-docking protein FtsY [Burkholderia mallei NCTC 10247] gi|167001053|ref|ZP_02266854.1| signal recognition particle-docking protein FtsY [Burkholderia mallei PRL-20] gi|254175216|ref|ZP_04881877.1| signal recognition particle-docking protein FtsY [Burkholderia mallei ATCC 10399] gi|254201698|ref|ZP_04908062.1| signal recognition particle-docking protein FtsY [Burkholderia mallei FMH] gi|254207032|ref|ZP_04913383.1| signal recognition particle-docking protein FtsY [Burkholderia mallei JHU] gi|254357511|ref|ZP_04973785.1| signal recognition particle-docking protein FtsY [Burkholderia mallei 2002721280] gi|121229371|gb|ABM51889.1| signal recognition particle-docking protein FtsY [Burkholderia mallei SAVP1] gi|124291947|gb|ABN01216.1| signal recognition particle-docking protein FtsY [Burkholderia mallei NCTC 10229] gi|126241753|gb|ABO04846.1| signal recognition particle-docking protein FtsY [Burkholderia mallei NCTC 10247] gi|147747592|gb|EDK54668.1| signal recognition particle-docking protein FtsY [Burkholderia mallei FMH] gi|147752574|gb|EDK59640.1| signal recognition particle-docking protein FtsY [Burkholderia mallei JHU] gi|148026575|gb|EDK84660.1| signal recognition particle-docking protein FtsY [Burkholderia mallei 2002721280] gi|160696261|gb|EDP86231.1| signal recognition particle-docking protein FtsY [Burkholderia mallei ATCC 10399] gi|238524797|gb|EEP88228.1| signal recognition particle-docking protein FtsY [Burkholderia mallei GB8 horse 4] gi|243063123|gb|EES45309.1| signal recognition particle-docking protein FtsY [Burkholderia mallei PRL-20] Length = 439 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 128/304 (42%), Positives = 186/304 (61%), Gaps = 7/304 (2%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + +++ Sbjct: 142 KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDA 197 Query: 70 LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L K A ++ + + D + L+ ++L PL K F + P V+++ GVNG GKTT I Sbjct: 198 LREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSFVLGRAQ-PLVMMIAGVNGAGKTTSI 256 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+K + V+LAAGDTFR+AA +QL IW +R + V + D AA+ ++A Sbjct: 257 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 315 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL Q Sbjct: 316 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 375 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 V+ F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ Sbjct: 376 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 435 Query: 309 VITG 312 + G Sbjct: 436 ALLG 439 >gi|269103876|ref|ZP_06156573.1| signal recognition particle receptor protein FtsY [Photobacterium damselae subsp. damselae CIP 102761] gi|268163774|gb|EEZ42270.1| signal recognition particle receptor protein FtsY [Photobacterium damselae subsp. damselae CIP 102761] Length = 462 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 127/309 (41%), Positives = 198/309 (64%), Gaps = 1/309 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 ++ +S + +L +G T + +++DD + EELE+ L+ +D+G+ Sbjct: 150 EQEKPKSEGFFARLMRGLRKTKENFGSSFFSLFKGKKIDDELFEELEEQLLIADVGMDTT 209 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+E L K K++ LY + + + +ML + +PF D S +P+VIL+VGVNGV Sbjct: 210 VKIIENLTEKASRKELKDGEALYGLLKDELAEMLAKVEQPFEIDTSKKPYVILMVGVNGV 269 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+KK G VMLAAGDTFR+AA++QL++W +R + G+D+A++ Sbjct: 270 GKTTTIGKLAKKFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVI 329 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 ++A + A+AK +DV+I DTAGRL N + LM + K++RV+K++DP APH ++ LDA TG Sbjct: 330 FDAIESAKAKNIDVIIADTAGRLQNKANLMEELRKIVRVMKKIDPDAPHEIMLTLDAGTG 389 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA +G+ +TK+DGTA+GG + I IP+ ++G+GEGI+DL PF Sbjct: 390 QNAISQAKLFSEVAPVSGITLTKLDGTAKGGVIFAIADQFHIPIRYIGIGEGIDDLRPFA 449 Query: 303 AKDFSAVIT 311 A +F + Sbjct: 450 ADEFIEALF 458 >gi|323141213|ref|ZP_08076114.1| signal recognition particle-docking protein FtsY [Phascolarctobacterium sp. YIT 12067] gi|322414356|gb|EFY05174.1| signal recognition particle-docking protein FtsY [Phascolarctobacterium sp. YIT 12067] Length = 305 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 122/306 (39%), Positives = 184/306 (60%), Gaps = 4/306 (1%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 + + +L +G + T + I +++ S +DD +ELE +L+ +D+GV +K+++ Sbjct: 1 MGFFERLKEGLSKTRRNFTDRIQELVGLSAAIDDDFLDELEMILLSADVGVKTTEKLIDA 60 Query: 70 LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 + K++S + + + + +ML + +P VILVVGVNGVGKTT I Sbjct: 61 VRKAAKKKEISGTEDVIPFLKKYMAEMLADSGQRTRIGA--KPTVILVVGVNGVGKTTTI 118 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+ + KV+LAAGDTFR+AA +QL+IW +R D + G+D AA+ ++A K Sbjct: 119 GKLANYFTLFKYKVVLAAGDTFRAAAGEQLQIWGERAHCDVIRHAEGADPAAVVFDAMKA 178 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A A+K D+L IDTAGRLHN + LM + K+ R++KR P APH VLDATTGQNA+ Q Sbjct: 179 AIARKADILFIDTAGRLHNKANLMNELEKIHRIIKREIPEAPHETFLVLDATTGQNAINQ 238 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 ++F A TG+++TK+DGTA+GG ++ I +PV ++GVGEGI D PF F Sbjct: 239 AKVFMETAKVTGVVLTKLDGTAKGGVVVAIKEELGLPVKWIGVGEGIMDFRPFEPDKFVE 298 Query: 309 VITGCL 314 + Sbjct: 299 ALFDSG 304 >gi|253999629|ref|YP_003051692.1| signal recognition particle-docking protein FtsY [Methylovorus sp. SIP3-4] gi|253986308|gb|ACT51165.1| signal recognition particle-docking protein FtsY [Methylovorus sp. SIP3-4] Length = 341 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 121/305 (39%), Positives = 179/305 (58%), Gaps = 1/305 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 A LSW +L G A T +L + + ++D+ V EELE +L+ SD+GVA Q + Sbjct: 37 AENKLSWTERLKNGLAKTRSQLGNQLASLFGGGKIDEDVYEELETILLTSDVGVAATQAL 96 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 +E++ + + +S L + L+ + +H+P VI++ GVNG GKTT Sbjct: 97 LEQIRQRVKRQSLSDTTQLKQALKDALLELLAPLEKPLVTTTHQPFVIMLAGVNGAGKTT 156 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+ G V++AAGDTFR+AA +QL+ W DR + V E D AA+ ++A Sbjct: 157 SIGKLANLFQAQGKSVLIAAGDTFRAAAREQLQAWGDRNNVHVVAQE-SGDPAAVIFDAV 215 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A+A+ +D+++ DTAGRL LM I K+ RV+ + P APH +L VLDA TGQNA+ Sbjct: 216 NSAKARNIDIVLADTAGRLPTQLNLMEEIRKVQRVIGKALPGAPHEILLVLDANTGQNAI 275 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QV+ F G TGL+++K+DGTA+GG + I IP+ ++GVGE I DL PF A++F Sbjct: 276 SQVKAFDDALGVTGLVLSKLDGTAKGGVIAAIAQARPIPIRYIGVGESIADLRPFKAEEF 335 Query: 307 SAVIT 311 + Sbjct: 336 VDALF 340 >gi|261364318|ref|ZP_05977201.1| signal recognition particle-docking protein FtsY [Neisseria mucosa ATCC 25996] gi|288567574|gb|EFC89134.1| signal recognition particle-docking protein FtsY [Neisseria mucosa ATCC 25996] Length = 483 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 119/311 (38%), Positives = 186/311 (59%), Gaps = 2/311 (0%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61 S L W +L +G + K+ + + + ++D+ + EELE +LI SD+G+ Sbjct: 173 SKPSETEPKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGME 232 Query: 62 VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 + +++++ + K + L + E ++ ++ PL KP + P VI++ G+N Sbjct: 233 ATEYLMKDVRNRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGIN 292 Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 G GKTT IGKL+K G V+LAAGDTFR+AA +QL+ W +R + + S+ D+AA Sbjct: 293 GAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAA 351 Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240 + ++A + A+A+ +D+++ DTAGRL LM I K+ RVLK+ P APH ++ VLDA Sbjct: 352 VCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLKKAMPDAPHEIIVVLDAN 411 Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300 GQNA+ QV+ F G TGLI+TK+DGTA+GG L + +PV ++GVGEGI+DL P Sbjct: 412 IGQNAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRP 471 Query: 301 FVAKDFSAVIT 311 F A+ F + Sbjct: 472 FNARAFVDALL 482 >gi|302877705|ref|YP_003846269.1| signal recognition particle-docking protein FtsY [Gallionella capsiferriformans ES-2] gi|302580494|gb|ADL54505.1| signal recognition particle-docking protein FtsY [Gallionella capsiferriformans ES-2] Length = 321 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 139/314 (44%), Positives = 200/314 (63%), Gaps = 8/314 (2%) Query: 2 SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGV 60 ++ +E SWI +L G + T +L D+ S ++DD + EELE +LI +D+G+ Sbjct: 12 KAEETVAEKRSWIDRLKAGLSRTGNQL----ADLFSRGGKIDDDLYEELETILITADVGM 67 Query: 61 AVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 ++ +L R K V + + ++ + K+L PL+ P + + +H+P VI++VGV Sbjct: 68 DATNTLLADLRRHVREHKLVEAEELKAGLAHCLLKLLGPLAVPLHAE-THKPFVIMMVGV 126 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NG GKTT IGKL+K + GL VMLAAGDTFR+AA +QL W +R + + + G A Sbjct: 127 NGAGKTTSIGKLAKYLQSQGLSVMLAAGDTFRAAAREQLMTWGERNNVTVIAQQSGDAA- 185 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 A+ Y+A + AQA+K+DV++ DTAGRL + LM I K+ RV+ ++ P APH VL VLDA Sbjct: 186 AVIYDAVQAAQARKIDVVLADTAGRLTTQAHLMEEIKKVKRVIAKVLPDAPHEVLLVLDA 245 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 TGQNAL QV+ F A G TGLI+TK+DGTA+GG + I H IPV F+GVGEG++DL Sbjct: 246 NTGQNALSQVKAFDAALGVTGLILTKLDGTAKGGVIAAIAKAHPIPVRFIGVGEGLDDLR 305 Query: 300 PFVAKDFSAVITGC 313 PF A++F + G Sbjct: 306 PFDAQEFIDALLGL 319 >gi|323934550|gb|EGB30950.1| signal recognition particle-docking protein FtsY [Escherichia coli E1520] Length = 516 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%) Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60 ++ ++ + +L + T L G + +++DD + EELE+ L+ +D+GV Sbjct: 202 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 261 Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119 +KI+ L K + LY + E + ++L + +P N + P VIL+VGV Sbjct: 262 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 320 Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179 NGVGKTT IGKL+++ G VMLAAGDTFR+AA++QL++W R + + G+D+A Sbjct: 321 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 380 Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239 ++ ++A + A+A+ +DVLI DTAGRL N S LM + K++RV+K+LD APH V+ +DA Sbjct: 381 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 440 Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299 +TGQNA+ Q ++FH G TG+ +TK+DGTA+GG + + IP+ ++GVGE I DL Sbjct: 441 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 500 Query: 300 PFVAKDFSAVITGCLD 315 PF A DF + D Sbjct: 501 PFKADDFIEALFARED 516 >gi|217419579|ref|ZP_03451085.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 576] gi|217396883|gb|EEC36899.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 576] Length = 439 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 127/304 (41%), Positives = 185/304 (60%), Gaps = 7/304 (2%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + +++ Sbjct: 142 KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDA 197 Query: 70 LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L K A ++ + + D + L+ ++L PL K + P V+++ GVNG GKTT I Sbjct: 198 LREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 256 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+K + V+LAAGDTFR+AA +QL IW +R + V + D AA+ ++A Sbjct: 257 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 315 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL Q Sbjct: 316 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 375 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 V+ F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ Sbjct: 376 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 435 Query: 309 VITG 312 + G Sbjct: 436 ALLG 439 >gi|313201669|ref|YP_004040327.1| signal recognition particle-docking protein ftsy [Methylovorus sp. MP688] gi|312440985|gb|ADQ85091.1| signal recognition particle-docking protein FtsY [Methylovorus sp. MP688] Length = 344 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 121/305 (39%), Positives = 179/305 (58%), Gaps = 1/305 (0%) Query: 7 ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66 A LSW +L G A T +L + + ++D+ V EELE +L+ SD+GVA Q + Sbjct: 40 AENKLSWTERLKNGLAKTRSQLGNQLASLFGGGKIDEDVYEELETILLTSDVGVAATQAL 99 Query: 67 VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126 +E++ + + +S L + L+ + +H+P VI++ GVNG GKTT Sbjct: 100 LEQIRQRVKRQSLSDTTQLKQALKDALLELLAPLEKPLVTTTHQPFVIMLAGVNGAGKTT 159 Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 IGKL+ G V++AAGDTFR+AA +QL+ W DR + V E D AA+ ++A Sbjct: 160 SIGKLANLFQVQGKSVLIAAGDTFRAAAREQLQAWGDRNNVHVVAQE-SGDPAAVIFDAV 218 Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 A+A+ +D+++ DTAGRL LM I K+ RV+ + P APH +L VLDA TGQNA+ Sbjct: 219 NSAKARNIDIVLADTAGRLPTQLNLMEEIRKVQRVIGKALPGAPHEILLVLDANTGQNAI 278 Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306 QV+ F G TGL+++K+DGTA+GG + I IP+ ++GVGE I DL PF A++F Sbjct: 279 SQVKAFDDALGVTGLVLSKLDGTAKGGVIAAIAQARPIPIRYIGVGESIADLRPFKAEEF 338 Query: 307 SAVIT 311 + Sbjct: 339 VDALF 343 >gi|148978744|ref|ZP_01815124.1| cell division protein FtsY [Vibrionales bacterium SWAT-3] gi|145962165|gb|EDK27449.1| cell division protein FtsY [Vibrionales bacterium SWAT-3] Length = 411 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 129/310 (41%), Positives = 197/310 (63%), Gaps = 1/310 (0%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62 + + S+ +L + + T + G + +++DD + EELE+ L+ +D+G+ Sbjct: 98 EEVQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMNT 157 Query: 63 AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121 KI+E L K D+ LY + E + +L + +P D + P+VIL+VGVNG Sbjct: 158 TVKIIENLTEKASRNDLKDGEALYGLLKEEMADILSQVEQPLVVDTTKTPYVILMVGVNG 217 Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 VGKTT IGKL+K+ + G KVMLAAGDTFR+AA++QL++W R + G+D+A++ Sbjct: 218 VGKTTTIGKLAKQFQNEGKKVMLAAGDTFRAAAVEQLQVWGQRNDVPVIAQHTGADSASV 277 Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241 Y+A + A+A+ VDV+I DTAGRL N S LM + K++RV+K++D APH ++ LDA T Sbjct: 278 IYDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGT 337 Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301 GQNA+ Q ++F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI+DL PF Sbjct: 338 GQNAISQAKLFSEVAPVTGITLTKLDGTAKGGVIFSIADQFQIPIRYIGVGEGIDDLRPF 397 Query: 302 VAKDFSAVIT 311 +KDF + Sbjct: 398 ESKDFIEALF 407 >gi|119384655|ref|YP_915711.1| signal recognition particle-docking protein FtsY [Paracoccus denitrificans PD1222] gi|119374422|gb|ABL70015.1| signal recognition particle-docking protein FtsY [Paracoccus denitrificans PD1222] Length = 346 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 138/347 (39%), Positives = 207/347 (59%), Gaps = 43/347 (12%) Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISS-------------------------------- 38 +S+ KL +S K+ G+ DI+S Sbjct: 1 MSFFSKLRDRLTRSSSKIGSGLEDIVSEAAADEKPASPAPAASQPATEPEARPGVLGRLL 60 Query: 39 ----------RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV 88 R LDD + EELE++LI++D+GV A ++ + R + VS + + Sbjct: 61 GRAPAVAEPRRELDDAMLEELEEMLIQADMGVETALRVTANIAEGRMGRRVSATELKELL 120 Query: 89 SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148 ++ I +++ P++KP + RP V+LVVGVNG GKTT IGKL+ + AG KV++AAGD Sbjct: 121 ADEIARIMTPVAKPLPL-YPKRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKKVVIAAGD 179 Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 TFR+AA++QL++W R + + GSD A+LA++A +A+A+ D+L+IDTAGRL N Sbjct: 180 TFRAAAVEQLQVWGQRAGVPVMTAPEGSDPASLAFDAMTKAEAEGADLLMIDTAGRLQNR 239 Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268 LM + K++RV+++ DP APH+ L VLDATTGQNAL QVE+F +A +GL+MTK+DG Sbjct: 240 QDLMEELAKIVRVIRKKDPSAPHNTLLVLDATTGQNALSQVEIFRKLADVSGLVMTKLDG 299 Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 TARGG L+ + +P++ +GVGE I+DL+ F A+DF+ + G D Sbjct: 300 TARGGVLVALADRFGLPIHAIGVGEQIDDLDAFDARDFARALVGLGD 346 >gi|90421736|ref|YP_530106.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris BisB18] gi|90103750|gb|ABD85787.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas palustris BisB18] Length = 316 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 150/310 (48%), Positives = 210/310 (67%) Query: 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62 N ++ SW R+L+ G TS + + + ++ R+LD + +E+ED+L+R+D+G V Sbjct: 2 NDTTETKKPSWWRRLSSGLKRTSSSIGTALAEFVTKRKLDRAMLDEIEDVLLRADLGTEV 61 Query: 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 + +I + RY K +S V V+ + K+L P+++P D +H+P VIL+VGVNG Sbjct: 62 SARIAAAVGVGRYDKMISAGDVKTIVAAEVEKVLAPVAQPLVIDAAHKPFVILMVGVNGS 121 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+ K + G KVMLAAGDTFR+AAI+QLK+W +RT A + GSD+A LA Sbjct: 122 GKTTTIGKLAAKFAAEGRKVMLAAGDTFRAAAIEQLKVWGERTGAPVISGTQGSDSAGLA 181 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 + A A+ + DVL+IDTAGRL N + LM + K++RV+K++D APH+VL VLDAT G Sbjct: 182 FTALTAAKDDRRDVLLIDTAGRLQNKAELMNELEKVVRVIKKVDATAPHAVLLVLDATVG 241 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNAL QVE F AG TGL+MTK+DGTARGG L+ + +K+PV+F+GVGE + DL PF Sbjct: 242 QNALSQVEAFSRTAGVTGLVMTKLDGTARGGILVALAEKYKLPVHFVGVGESVEDLAPFT 301 Query: 303 AKDFSAVITG 312 A DF+ I G Sbjct: 302 AADFAKAIAG 311 >gi|237810765|ref|YP_002895216.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei MSHR346] gi|237505520|gb|ACQ97838.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei MSHR346] Length = 438 Score = 309 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 128/304 (42%), Positives = 185/304 (60%), Gaps = 7/304 (2%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + ++ Sbjct: 141 KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGA 196 Query: 70 LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L K A ++ + + D + EL+ ++L PL K + P V+++ GVNG GKTT I Sbjct: 197 LREKVRAGRLTDPQQVKDALRELLVELLAPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 255 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+K + V+LAAGDTFR+AA +QL IW +R + V + D AA+ ++A Sbjct: 256 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 314 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL Q Sbjct: 315 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 374 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 V+ F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ Sbjct: 375 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 434 Query: 309 VITG 312 + G Sbjct: 435 ALLG 438 >gi|167917481|ref|ZP_02504572.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei BCC215] gi|254187806|ref|ZP_04894318.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei Pasteur 52237] gi|254197031|ref|ZP_04903455.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei S13] gi|254261869|ref|ZP_04952923.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 1710a] gi|157935486|gb|EDO91156.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei Pasteur 52237] gi|169653774|gb|EDS86467.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei S13] gi|254220558|gb|EET09942.1| signal recognition particle-docking protein FtsY [Burkholderia pseudomallei 1710a] Length = 439 Score = 309 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 127/304 (41%), Positives = 185/304 (60%), Gaps = 7/304 (2%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69 SWI +L G A TS IT++ + ++DD + EELE L+ SD G+ + +++ Sbjct: 142 KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDA 197 Query: 70 LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128 L K A ++ + + D + L+ ++L PL K + P V+++ GVNG GKTT I Sbjct: 198 LREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 256 Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188 GKL+K + V+LAAGDTFR+AA +QL IW +R + V + D AA+ ++A Sbjct: 257 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 315 Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 A+A+ +DV++ DTAGRL LM + K+ RV+ + APH VL V+DA TGQNAL Q Sbjct: 316 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 375 Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308 V+ F G TGLI+TK+DGTA+GG L I IPVYF+G+GE + DL+PF A++F+ Sbjct: 376 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 435 Query: 309 VITG 312 + G Sbjct: 436 ALLG 439 >gi|153835089|ref|ZP_01987756.1| cell division protein FtsY [Vibrio harveyi HY01] gi|148868439|gb|EDL67547.1| cell division protein FtsY [Vibrio harveyi HY01] Length = 410 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 128/309 (41%), Positives = 199/309 (64%), Gaps = 1/309 (0%) Query: 4 QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63 Q+ + S+ +L + + T + G + S +++DD + EELE+ L+ +D+G+ Sbjct: 98 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMETT 157 Query: 64 QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122 KI+ L K D+ LY + E + ++L + +P D S P+VIL+VGVNGV Sbjct: 158 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILAKVEQPLEIDSSKTPYVILMVGVNGV 217 Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182 GKTT IGKL+K+ + G KVMLAAGDTFR+AA++QL++W +R + + G+D+A++ Sbjct: 218 GKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 277 Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 Y+A + A+A+ VDV+I DTAGRL N + LM + K++RV+K++D APH ++ LDA TG Sbjct: 278 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 337 Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302 QNA+ Q ++F VA TG+ +TK+DGTA+GG + I +IP+ ++GVGEGI DL PF Sbjct: 338 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFE 397 Query: 303 AKDFSAVIT 311 ++F + Sbjct: 398 TQEFIDALF 406 >gi|325925082|ref|ZP_08186502.1| cell division protein FtsY (SRP receptor) [Xanthomonas perforans 91-118] gi|325544498|gb|EGD15861.1| cell division protein FtsY (SRP receptor) [Xanthomonas perforans 91-118] Length = 551 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 123/304 (40%), Positives = 178/304 (58%), Gaps = 8/304 (2%) Query: 10 SLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVE 68 W +L + S +LDD + +E+E LI +D+G+ +++ Sbjct: 248 KPGWRERLRNS------TFARSFGGLFSRNPKLDDDLLDEIETALITADVGIGATTALID 301 Query: 69 ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 L + +++ V Q + + + +L P+SKP D S +P V+L VGVNGVGKTT Sbjct: 302 GLRKRMKSREFVDAQALFKALRADLIALLQPVSKPLVIDRSLKPFVVLT