RPSBLAST alignment for GI: 254780709 and conserved domain: TIGR01425
>gnl|CDD|130492 TIGR01425, SRP54_euk, signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. Length = 429
Score = 134 bits (339), Expect = 2e-32
Identities = 82/279 (29%), Positives = 133/279 (47%), Gaps = 24/279 (8%)
Query: 48 ELEDLLIRSDIGVAVAQKIVE--------ELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99
E+ L+ SD+ + + +++ E E + K +Q ++ EL ++ P
Sbjct: 33 EICTALLESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFK--ELC-NLVDPG 89
Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
+ F + +VI+ VG+ G GKTT KL+ G K L DTFR+ A DQLK
Sbjct: 90 VEAFTPK-KGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLK 148
Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL---MAGIG 216
A + F S SD +A E ++ + + D++I+DT+GR L M +
Sbjct: 149 QNATKARIPFYGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVA 208
Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
+ I+ P +++ V+D + GQ A Q + F +I+TK+DG A+GGG +
Sbjct: 209 EAIQ---------PDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVIITKLDGHAKGGGAL 259
Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
V K P+ F+G GE I+D E F + F + + G D
Sbjct: 260 SAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKLLGMGD 298