BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780709|ref|YP_003065122.1| cell division protein
[Candidatus Liberibacter asiaticus str. psy62]
(321 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 321
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/321 (100%), Positives = 321/321 (100%)
Query: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV
Sbjct: 1 MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
Query: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN
Sbjct: 61 AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA
Sbjct: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT
Sbjct: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP
Sbjct: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
Query: 301 FVAKDFSAVITGCLDYGEEKI 321
FVAKDFSAVITGCLDYGEEKI
Sbjct: 301 FVAKDFSAVITGCLDYGEEKI 321
>gi|254780711|ref|YP_003065124.1| signal recognition particle protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 461
Score = 104 bits (259), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 132/278 (47%), Gaps = 21/278 (7%)
Query: 48 ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKMLMPL-- 99
E+ + +D+ + V Q +KR + +++L + +++H L+ +
Sbjct: 33 EIRRTFLEADVSLEVVQS-----FSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLG 87
Query: 100 SKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQ 157
+ D + P VI++VG+ G GKTT K++ + K+++A+ D R AA +Q
Sbjct: 88 KESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQ 147
Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
L+ ++ D + +A A + A+ D +I+DTAGR H N LM I +
Sbjct: 148 LRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISE 207
Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
+ + PH +L V DA TGQ+A+ F + TG+I+T+MDG RGG +
Sbjct: 208 IKSLTN------PHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALS 261
Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
+ P+ +G GE INDLE F + I G D
Sbjct: 262 MRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGD 299
>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 539
Score = 35.4 bits (80), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 10/112 (8%)
Query: 113 VILVVGVNGVGKTTVIGKLSKKMS------DAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
++ V+G NG GKTT+ L+ S G V L+ D R + + +W D +
Sbjct: 345 IVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISG 404
Query: 167 ADFVCS----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
D + EI S A A+ Q +++ L GR+H IL +G
Sbjct: 405 GDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSG 456
>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 610
Score = 33.9 bits (76), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 106 DFSHRPH---VILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLK-- 159
DFS R H I +VG NG GKTT++ L+ K+ D G + G + A IDQ +
Sbjct: 302 DFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGF---ITLGTNLKIATIDQKRED 358
Query: 160 IWADRTSADFVCSEIG 175
I D++ A ++ G
Sbjct: 359 IDPDKSLASYLTGSSG 374
>gi|254780132|ref|YP_003064545.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 186
Score = 26.9 bits (58), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
H+ +++G +GVGKTT+ +K++ +++ G T R +D+
Sbjct: 3 HIFVLIGASGVGKTTI----AKQVVLNSEYLVMPVGVTTRRPRVDE 44
>gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 479
Score = 25.8 bits (55), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
R VILV G G+GK+T++ + + ++ ++ +G+ AI Q+++ A R
Sbjct: 89 RGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE----EAIGQIRLRAQR 139
>gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 437
Score = 25.8 bits (55), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 111 PHVILVVGVNGVGKTTVIGKLSK 133
P IL+VG GVGKT + +L++
Sbjct: 53 PKNILLVGPTGVGKTAISRRLAR 75
>gi|254781197|ref|YP_003065610.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 185
Score = 25.8 bits (55), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
H+ +++G +GVG+TT+ +K++ +++ G T R +D+
Sbjct: 3 HIFVLIGASGVGETTI----AKQVVLNSEYLVMPVGVTTRRPRVDE 44
>gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 762
Score = 25.4 bits (54), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 114 ILVVGVNGVGKTTVIG-----KLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
I ++G N IG L K SD A +++ L+ TF + + K W+ R +
Sbjct: 592 IHILGTNSFSIPDSIGIGQNSGLEDKFSDYAAAVRLSLSPKITFSTQTLINPKDWSTRRT 651
Query: 167 ADFVCSEIGSDAAALAY 183
+ +GS A ++Y
Sbjct: 652 DTTIDYTMGSYEANISY 668
>gi|254780554|ref|YP_003064967.1| Holliday junction resolvase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 169
Score = 25.0 bits (53), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Query: 26 LKLKEGITDIISSRRLDDGVREEL---EDLLIRSDIGVAVAQKIVEELLTK----RYAKD 78
+L EG+TD+I + R ++ E++ +D + +G A A I+ L + YA +
Sbjct: 50 CQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPN 109
Query: 79 VSVQRVL---YDVSELIH---KMLMPLS 100
+ V+ + + IH KMLMP S
Sbjct: 110 TIKKAVIGVGHGDKKQIHMMLKMLMPES 137
>gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str.
psy62]
Length = 375
Score = 24.3 bits (51), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 11/43 (25%)
Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
H I V G NGVGKT ++ +S L+ G FR A+
Sbjct: 29 HTIFV-GDNGVGKTNILEAIS----------FLSPGRGFRRAS 60
>gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 470
Score = 24.3 bits (51), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 112 HVILVVGVNGVGKTTVIGKLSKK 134
+ I +VG VGK+T+ +L KK
Sbjct: 3 YTIAIVGAPNVGKSTLFNRLVKK 25
Score = 23.5 bits (49), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 110 RPHVILVVGVNGVGKTTVIGKL 131
+P I VVG VGK+T+I +L
Sbjct: 202 KPLRIAVVGRPNVGKSTLINRL 223
>gi|254780901|ref|YP_003065314.1| single-stranded-DNA-specific exonuclease protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 600
Score = 23.9 bits (50), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 177 DAAALAYEAFKQAQAKKVDVLIID 200
D + +Y+A + A + +DV++ID
Sbjct: 157 DCGSTSYDALQYATNQGIDVIVID 180
>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
Length = 647
Score = 23.9 bits (50), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 77 KDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
KDV+ V D+ E++ + P + F PH +L+VG G GKT
Sbjct: 148 KDVAGVDEAKEDLQEIVDFLCDP--QKFKRLGGRIPHGVLLVGPPGTGKT 195
>gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 504
Score = 23.9 bits (50), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
R +I++ G G+GKT++ ++ ++DA
Sbjct: 217 QRSDLIIIAGRPGMGKTSLATNIAYNVADA 246
>gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str.
psy62]
Length = 805
Score = 23.5 bits (49), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
R V L++GV G GKT + K+ + M +++A + + K + + ++
Sbjct: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPA--IVMAPNKILAAQLYSEFKNFFPHNAVEY 224
Query: 170 VCS 172
S
Sbjct: 225 FVS 227
>gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate carboxykinase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 509
Score = 23.5 bits (49), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
YA ++ Y + +MP+ N D + V L G++G GKTT+
Sbjct: 183 YAGEIKKSVFTYLNHIFPERGIMPMHCSINMD-KEKEDVALFFGLSGTGKTTL 234
>gi|254780897|ref|YP_003065310.1| trigger factor [Candidatus Liberibacter asiaticus str. psy62]
Length = 473
Score = 23.5 bits (49), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDI 58
+ I K ++G LK + II S RL D E +ED+ +++I
Sbjct: 1 MQVIEKFSEG-------LKRELDVIIPSNRLTDSFNERIEDIRSKANI 41
>gi|254780505|ref|YP_003064918.1| 6-phosphogluconolactonase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 234
Score = 22.7 bits (47), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
LD H P SV+ + D T+ N R F A+ L + ++GT +
Sbjct: 156 LDTHTPRSVIAIKDYTS--NEQRMTMTFSALHDAQFLAL-HIEGTQK 199
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.136 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189,867
Number of Sequences: 1233
Number of extensions: 7598
Number of successful extensions: 58
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 29
length of query: 321
length of database: 328,796
effective HSP length: 74
effective length of query: 247
effective length of database: 237,554
effective search space: 58675838
effective search space used: 58675838
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 38 (19.2 bits)