HHsearch alignment for GI: 254780710 and conserved domain: COG0253
>COG0253 DapF Diaminopimelate epimerase [Amino acid transport and metabolism].
Probab=100.00 E-value=0 Score=589.01 Aligned_cols=268 Identities=40% Similarity=0.696 Sum_probs=242.0
Q ss_pred CEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHCCCC-CCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 1137851767738999477888788888998720356-714355899825888886689999717876212332033223
Q gi|254780710|r 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84 (296)
Q Consensus 6 i~F~Kmhg~GNDFiiiD~~~~~~~~~~~~i~~~~~~~-giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~Rc~ 84 (296)
T Consensus 1 ~~F~KmhG~GNdfivvd~~~~~~~~~~~~a~~l~~r~~giGaDgvl~v~~p~s~~~d~~~rifN~DGS~ae~CGNG~Rc~ 80 (272)
T COG0253 1 MEFSKMHGLGNDFIVVDEFDKKDEETPELARALCDRHFGIGADGVLFVEPPRSPGADFHLRIFNSDGSEAEMCGNGARCF 80 (272)
T ss_pred CCEEEECCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCHHHHCCCHHHHH
T ss_conf 90677758898599993665334368999999865536857753999925888898789999967988776255699999
Q ss_pred HHHHHCC--CCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEECCEEEEEC
Q ss_conf 1110013--57640379835883799985774277403687777776856565654344301105777740213099955
Q gi|254780710|r 85 VRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 (296)
Q Consensus 85 a~yl~~~--~~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 162 (296)
T Consensus 81 a~~l~~~~~~~~~~~~v~T~~G~~~~~~~~~~~v~VdMg~p~~~~~~ip~~~~--~~-~~~~~~~----~~~~~~~~vs~ 153 (272)
T COG0253 81 ARFLAERGLVKKKEISVETLAGILKVKVHDDNTVSVDMGLPSFKPAEIPLLEE--KV-EEQYGLG----EETVTFYAVSM 153 (272)
T ss_pred HHHHHHHCCCCCCCEEEEECCCEEEEEEEECCEEEEECCCCCCCCCCCCCHHH--HC-CCCCCCC----CCCEEEEEEEC
T ss_conf 99999853875751799952543899995087799986777526244772231--00-5510234----44204899966
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 87427974255768688876310002332375555146799728872899980467876656323589999999981788
Q gi|254780710|r 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 (296)
Q Consensus 163 GNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~~~ 242 (296)
T Consensus 154 GnPH~V~~Vd-dv~~~~~~~~g~~l~~~~~Fp~~vNV~F~~v~~~~~i~lrv~ERG~G~T~ACGTGa~Aa~~~a~~~~~~ 232 (272)
T COG0253 154 GNPHLVIFVD-DVETANLEELGPLLESHELFPEGVNVGFVQVLSRDAIRLRVYERGAGETLACGTGACAAAVVAARLGLL 232 (272)
T ss_pred CCCEEEEEEC-CCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9986999958-825233554234552375578842799999779992799993058830014651788999999981658
Q ss_pred CCCEEEECCCCEEEEEEECCC-EEEEEECEEEEEEEEEEE
Q ss_conf 980799907957999995898-199994628999889984
Q gi|254780710|r 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 (296)
Q Consensus 243 ~~~v~V~~pGG~L~v~~~~~~-~i~l~Gpa~~vf~G~~~i 281 (296)
T Consensus 233 ~~~v~V~~pGG~L~i~~~~~g~~v~m~G~a~~v~~G~~~~ 272 (272)
T COG0253 233 DRKVTVHLPGGTLEIEWKDDGKPVYMTGPATRVAEGKLYI 272 (272)
T ss_pred CCCEEEECCCCEEEEEEECCCCEEEEEECEEEEEEEEECC
T ss_conf 9867999699749999986995299981579999108859