HHsearch alignment for GI: 254780710 and conserved domain: COG0253

>COG0253 DapF Diaminopimelate epimerase [Amino acid transport and metabolism].
Probab=100.00  E-value=0  Score=589.01  Aligned_cols=268  Identities=40%  Similarity=0.696  Sum_probs=242.0

Q ss_pred             CEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHCCCC-CCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf             1137851767738999477888788888998720356-714355899825888886689999717876212332033223
Q gi|254780710|r    6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV   84 (296)
Q Consensus         6 i~F~Kmhg~GNDFiiiD~~~~~~~~~~~~i~~~~~~~-giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~Rc~   84 (296)
T Consensus         1 ~~F~KmhG~GNdfivvd~~~~~~~~~~~~a~~l~~r~~giGaDgvl~v~~p~s~~~d~~~rifN~DGS~ae~CGNG~Rc~   80 (272)
T COG0253           1 MEFSKMHGLGNDFIVVDEFDKKDEETPELARALCDRHFGIGADGVLFVEPPRSPGADFHLRIFNSDGSEAEMCGNGARCF   80 (272)
T ss_pred             CCEEEECCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCHHHHCCCHHHHH
T ss_conf             90677758898599993665334368999999865536857753999925888898789999967988776255699999


Q ss_pred             HHHHHCC--CCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEECCEEEEEC
Q ss_conf             1110013--57640379835883799985774277403687777776856565654344301105777740213099955
Q gi|254780710|r   85 VRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM  162 (296)
Q Consensus        85 a~yl~~~--~~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i  162 (296)
T Consensus        81 a~~l~~~~~~~~~~~~v~T~~G~~~~~~~~~~~v~VdMg~p~~~~~~ip~~~~--~~-~~~~~~~----~~~~~~~~vs~  153 (272)
T COG0253          81 ARFLAERGLVKKKEISVETLAGILKVKVHDDNTVSVDMGLPSFKPAEIPLLEE--KV-EEQYGLG----EETVTFYAVSM  153 (272)
T ss_pred             HHHHHHHCCCCCCCEEEEECCCEEEEEEEECCEEEEECCCCCCCCCCCCCHHH--HC-CCCCCCC----CCCEEEEEEEC
T ss_conf             99999853875751799952543899995087799986777526244772231--00-5510234----44204899966


Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             87427974255768688876310002332375555146799728872899980467876656323589999999981788
Q gi|254780710|r  163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT  242 (296)
Q Consensus       163 GNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~~~  242 (296)
T Consensus       154 GnPH~V~~Vd-dv~~~~~~~~g~~l~~~~~Fp~~vNV~F~~v~~~~~i~lrv~ERG~G~T~ACGTGa~Aa~~~a~~~~~~  232 (272)
T COG0253         154 GNPHLVIFVD-DVETANLEELGPLLESHELFPEGVNVGFVQVLSRDAIRLRVYERGAGETLACGTGACAAAVVAARLGLL  232 (272)
T ss_pred             CCCEEEEEEC-CCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             9986999958-825233554234552375578842799999779992799993058830014651788999999981658


Q ss_pred             CCCEEEECCCCEEEEEEECCC-EEEEEECEEEEEEEEEEE
Q ss_conf             980799907957999995898-199994628999889984
Q gi|254780710|r  243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI  281 (296)
Q Consensus       243 ~~~v~V~~pGG~L~v~~~~~~-~i~l~Gpa~~vf~G~~~i  281 (296)
T Consensus       233 ~~~v~V~~pGG~L~i~~~~~g~~v~m~G~a~~v~~G~~~~  272 (272)
T COG0253         233 DRKVTVHLPGGTLEIEWKDDGKPVYMTGPATRVAEGKLYI  272 (272)
T ss_pred             CCCEEEECCCCEEEEEEECCCCEEEEEECEEEEEEEEECC
T ss_conf             9867999699749999986995299981579999108859