Query gi|254780710|ref|YP_003065123.1| diaminopimelate epimerase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 296
No_of_seqs 115 out of 2293
Neff 6.6
Searched_HMMs 39220
Date Sun May 29 20:59:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780710.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00450 dapF diaminopimelate 100.0 0 0 638.2 30.5 272 5-282 1-278 (278)
2 TIGR00652 DapF diaminopimelate 100.0 0 0 638.5 26.8 271 6-280 1-293 (294)
3 PRK13577 diaminopimelate epime 100.0 0 0 618.7 29.3 269 6-280 1-273 (281)
4 COG0253 DapF Diaminopimelate e 100.0 0 0 589.0 27.8 268 6-281 1-272 (272)
5 pfam01678 DAP_epimerase Diamin 99.9 1.6E-27 4.2E-32 201.3 11.4 116 8-125 1-120 (121)
6 pfam01678 DAP_epimerase Diamin 99.9 7.1E-23 1.8E-27 170.7 10.6 113 161-274 4-121 (121)
7 pfam02567 PhzC-PhzF Phenazine 99.6 4.1E-12 1.1E-16 99.7 23.4 255 8-277 4-280 (280)
8 PRK10281 hypothetical protein; 99.5 2.8E-11 7.2E-16 94.2 22.1 262 8-281 11-299 (299)
9 COG0384 Predicted epimerase, P 99.4 1.3E-09 3.3E-14 83.3 23.1 261 8-281 12-291 (291)
10 KOG3033 consensus 99.2 5.8E-09 1.5E-13 79.0 16.5 262 8-281 13-286 (286)
11 TIGR00654 PhzF_family phenazin 99.0 1.6E-07 4E-12 69.5 19.3 265 8-281 11-314 (314)
12 PRK13969 proline racemase; Pro 98.8 2.6E-05 6.7E-10 54.9 23.3 266 3-285 4-326 (335)
13 PRK13971 hydroxyproline-2-epim 98.7 2.9E-05 7.5E-10 54.5 20.2 273 1-285 1-324 (333)
14 pfam05544 Pro_racemase Proline 98.7 1.9E-05 4.9E-10 55.8 19.0 259 10-285 3-318 (325)
15 PRK13970 hydroxyproline-2-epim 98.5 3.4E-05 8.7E-10 54.1 17.7 263 4-285 2-302 (310)
16 COG3938 Proline racemase [Amin 98.2 5.1E-05 1.3E-09 53.0 12.0 221 6-242 7-272 (341)
17 pfam02567 PhzC-PhzF Phenazine 96.3 0.1 2.7E-06 31.2 11.3 93 162-262 10-105 (280)
18 pfam04303 PrpF PrpF protein. P 95.9 0.16 4.2E-06 29.9 17.5 228 42-281 48-370 (371)
19 COG0384 Predicted epimerase, P 93.4 0.68 1.7E-05 25.8 10.6 95 160-262 16-113 (291)
20 PRK10281 hypothetical protein; 93.1 0.73 1.9E-05 25.6 11.3 91 162-260 17-110 (299)
21 COG1903 CbiD Cobalamin biosynt 81.8 2.4 6E-05 22.2 4.1 43 41-91 32-75 (367)
22 PRK00075 cbiD cobalt-precorrin 69.6 8.1 0.00021 18.7 4.1 10 117-126 116-125 (366)
23 pfam10941 DUF2620 Protein of u 61.9 6.3 0.00016 19.4 2.3 34 222-255 49-82 (117)
24 TIGR02065 ECX1 exosome complex 60.0 9.5 0.00024 18.2 3.0 33 47-87 103-135 (231)
25 COG2828 Uncharacterized protei 49.2 19 0.00049 16.2 3.3 58 225-282 301-374 (378)
26 TIGR01722 MMSDH methylmalonate 46.0 22 0.00055 15.9 3.6 73 12-105 161-247 (478)
27 COG0059 IlvC Ketol-acid reduct 45.2 22 0.00057 15.8 4.8 101 169-277 80-203 (338)
28 PRK10310 galactitol-specific P 42.0 14 0.00035 17.1 1.5 16 224-239 8-23 (94)
29 TIGR01066 rplM_bact ribosomal 39.2 27 0.0007 15.2 3.7 30 231-260 30-59 (145)
30 KOG1798 consensus 35.5 19 0.00048 16.3 1.3 13 64-76 930-942 (2173)
31 cd05807 CBM20_CGTase CGTase, C 34.9 21 0.00054 15.9 1.5 35 193-230 58-97 (101)
32 pfam02459 Adeno_terminal Adeno 34.3 30 0.00077 14.9 2.2 41 180-220 400-447 (548)
33 cd05566 PTS_IIB_galactitol PTS 33.8 20 0.00051 16.1 1.2 15 224-238 6-20 (89)
34 KOG1250 consensus 32.5 35 0.00089 14.5 2.8 28 227-254 322-353 (457)
35 KOG1794 consensus 31.8 36 0.00091 14.4 3.6 46 30-80 104-149 (336)
36 TIGR02219 phage_NlpC_fam putat 31.7 23 0.00058 15.7 1.2 37 216-262 54-91 (135)
37 TIGR02639 ClpA ATP-dependent C 30.5 16 0.00042 16.7 0.3 13 164-177 595-607 (774)
38 cd06221 sulfite_reductase_like 30.2 21 0.00055 15.9 0.9 21 208-233 217-237 (253)
39 cd01775 CYR1_RA CYR1 is a fung 29.4 36 0.00091 14.4 1.9 17 61-77 2-18 (97)
40 TIGR01415 trpB_rel pyridoxal-p 29.2 11 0.00028 17.8 -0.7 14 92-105 118-131 (426)
41 PRK10815 sensor protein PhoQ; 28.9 40 0.001 14.1 7.6 76 181-259 380-473 (484)
42 TIGR01362 KDO8P_synth 3-deoxy- 28.8 40 0.001 14.1 2.4 11 213-223 162-174 (279)
43 TIGR02918 TIGR02918 conserved 28.3 33 0.00084 14.7 1.6 20 55-74 156-176 (511)
44 TIGR00406 prmA ribosomal prote 27.9 32 0.00082 14.7 1.5 14 223-236 203-216 (330)
45 cd05535 POLBc_epsilon DNA poly 26.6 38 0.00097 14.3 1.6 11 46-56 331-341 (621)
46 TIGR03534 RF_mod_HemK protein- 26.5 34 0.00087 14.6 1.3 13 77-91 96-108 (251)
47 PRK05270 galactose-1-phosphate 26.3 44 0.0011 13.8 4.2 59 113-173 143-227 (496)
48 KOG2904 consensus 26.0 33 0.00085 14.6 1.2 12 249-260 275-286 (328)
49 pfam02302 PTS_IIB PTS system, 25.8 40 0.001 14.2 1.6 17 223-239 4-20 (91)
50 TIGR01123 ilvE_II branched-cha 25.6 19 0.00047 16.3 -0.1 17 214-230 261-278 (329)
51 PRK08345 cytochrome-c3 hydroge 25.4 13 0.00034 17.2 -0.9 59 40-104 37-101 (292)
52 COG2263 Predicted RNA methylas 25.1 37 0.00093 14.4 1.3 14 76-89 53-66 (198)
53 COG1022 FAA1 Long-chain acyl-C 24.2 13 0.00032 17.4 -1.2 28 251-280 409-436 (613)
54 TIGR01361 DAHP_synth_Bsub phos 24.0 49 0.0012 13.6 2.8 14 212-225 171-184 (262)
55 TIGR02912 sulfite_red_C sulfit 24.0 25 0.00064 15.5 0.3 55 162-223 113-169 (323)
56 PRK05225 ketol-acid reductoiso 23.7 49 0.0013 13.5 3.4 54 170-223 105-174 (489)
57 COG2264 PrmA Ribosomal protein 23.3 48 0.0012 13.6 1.6 16 223-240 169-184 (300)
58 COG3882 FkbH Predicted enzyme 23.3 50 0.0013 13.5 2.2 26 30-55 311-336 (574)
59 PRK00517 prmA ribosomal protei 22.4 49 0.0012 13.6 1.5 18 222-241 168-185 (298)
60 COG0043 UbiD 3-polyprenyl-4-hy 22.3 53 0.0013 13.3 2.6 95 197-293 162-276 (477)
61 pfam06325 PrmA Ribosomal prote 22.2 50 0.0013 13.5 1.5 16 223-240 167-182 (294)
62 cd00580 CHMI 5-carboxymethyl-2 21.9 49 0.0013 13.5 1.5 36 165-200 1-42 (113)
63 cd05799 PGM2 This CD includes 21.7 54 0.0014 13.3 3.1 29 45-73 96-124 (487)
64 KOG3480 consensus 21.6 30 0.00076 15.0 0.3 25 66-91 44-68 (90)
65 KOG0697 consensus 21.6 54 0.0014 13.2 3.3 76 63-140 138-215 (379)
66 TIGR01292 TRX_reduct thioredox 21.5 52 0.0013 13.4 1.5 126 79-237 184-319 (321)
67 PRK10291 glyoxalase I; Provisi 21.5 55 0.0014 13.2 4.7 58 164-223 66-127 (129)
68 PRK03124 S-adenosylmethionine 21.0 56 0.0014 13.2 5.3 66 190-257 47-119 (127)
69 TIGR02630 xylose_isom_A xylose 21.0 35 0.0009 14.5 0.6 206 15-256 180-427 (437)
70 KOG4042 consensus 20.7 28 0.00071 15.2 -0.0 70 188-260 82-152 (190)
71 KOG0647 consensus 20.7 57 0.0014 13.1 3.9 13 159-171 170-182 (347)
72 KOG1529 consensus 20.7 50 0.0013 13.5 1.3 48 6-53 39-93 (286)
73 TIGR02177 PorB_KorB 2-oxoacid: 20.6 57 0.0014 13.1 4.0 116 77-226 7-134 (302)
74 TIGR03533 L3_gln_methyl protei 20.6 57 0.0015 13.1 1.6 14 247-260 239-252 (284)
75 PRK11805 N5-glutamine S-adenos 20.3 57 0.0015 13.1 1.5 13 247-259 251-263 (307)
No 1
>PRK00450 dapF diaminopimelate epimerase; Provisional
Probab=100.00 E-value=0 Score=638.20 Aligned_cols=272 Identities=38% Similarity=0.624 Sum_probs=246.8
Q ss_pred C-CEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHCCC-CCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHH
Q ss_conf 4-113785176773899947788878888899872035-67143558998258888866899997178762123320332
Q gi|254780710|r 5 M-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMR 82 (296)
Q Consensus 5 m-i~F~Kmhg~GNDFiiiD~~~~~~~~~~~~i~~~~~~-~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~R 82 (296)
| |+|+||||+||||||+|.++....+++++++++|+| +||||||||+|++++++.+||+|+|||+|||+|+|||||+|
T Consensus 1 M~i~F~KmhG~GNDFiiid~~~~~~~~~~~~i~~lcdR~~GIGaDgll~i~~~~~~~~d~~m~ifN~DGS~AemCGNG~R 80 (278)
T PRK00450 1 MKMKFTKMHGLGNDFVVIDARDQDLTPTPELARALCDRHFGIGADGLLLVEPPPSPGADFRMRIFNADGSEAEMCGNGAR 80 (278)
T ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCHHHCCCCHHH
T ss_conf 93189999738982999979988789999999986256888688779999358898847899999399986752737899
Q ss_pred HHHHHHHCC--CCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEECCEEEE
Q ss_conf 231110013--576403798358837999857742774036877777768565656543443011057777402130999
Q gi|254780710|r 83 CVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 (296)
Q Consensus 83 c~a~yl~~~--~~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 160 (296)
|+|+||+++ ..+++++|+|.+|++.++...++.|+|+||.|+|.|++||+............ .......+++|
T Consensus 81 Cva~~l~~~~~~~~~~~~i~T~~G~~~~~~~~~~~i~V~MG~p~~~~~~ip~~~~~~~~~~~~~-----~~~~~~~~~~v 155 (278)
T PRK00450 81 CFARFVYDKGLTNKTEIRVETLAGIIELEVEDDGLVTVDMGEPRFEPAEIPFAAEAEKTYILEL-----QVGPTFECTAV 155 (278)
T ss_pred HHHHHHHHCCCCCCCCEEEEECCCEEEEEEECCCEEEEECCCCCCCHHHCCCCCCCCCCCEEEC-----CCCCCEEEEEE
T ss_conf 9999999808888871899968953999992698199981587447755866554453201201-----46871479999
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 55874279742557686888763100023323755551467997288728999804678766563235899999999817
Q gi|254780710|r 161 SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 (296)
Q Consensus 161 ~iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~ 240 (296)
+|||||||+||+ +++.+++.++|+.||+|++||+|+||+|++++++++|++||||||||||+||||||||||+++.+++
T Consensus 156 ~~GnPH~V~fv~-d~~~~~~~~~g~~i~~~~~Fp~g~NV~fv~v~~~~~i~vrt~ERGvGeTlACGTGa~Aaa~~a~~~g 234 (278)
T PRK00450 156 SMGNPHAVIFVD-DVDAAPVEELGPLLENHPRFPEGVNVGFVQVVDRDHIRLRVYERGVGETLACGTGACAAAVAAIRLG 234 (278)
T ss_pred ECCCCEEEEEEC-CCCHHHHHHHCCHHCCCCCCCCCCEEEEEEEECCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 559985999967-6012227664602013767878616999999069929999995268745255342889999999838
Q ss_pred CCCC-CEEEECCCCEEEEEEEC-CCEEEEEECEEEEEEEEEEEC
Q ss_conf 8898-07999079579999958-981999946289998899841
Q gi|254780710|r 241 KTNR-AVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 (296)
Q Consensus 241 ~~~~-~v~V~~pGG~L~v~~~~-~~~i~l~Gpa~~vf~G~~~i~ 282 (296)
++++ +++|++|||.|.|+|.+ +++|+|+|||++||+|+++|.
T Consensus 235 ~~~~~~v~V~~~GG~L~V~~~~~~~~v~l~Gpa~~vf~G~i~~e 278 (278)
T PRK00450 235 LLDTEPVTVHLPGGTLTIEWKGDGDPVYMTGPATHVFDGEIDLE 278 (278)
T ss_pred CCCCCEEEEECCCCEEEEEEECCCCEEEEECCCEEEEEEEEECC
T ss_conf 89994699996995799999889985999907799999999779
No 2
>TIGR00652 DapF diaminopimelate epimerase; InterPro: IPR001653 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . The lysine/diaminopimelic acid branch of the aspartate pathway produces the essential amino acid lysine via the intermediate meso-diaminopimelic acid (meso-DAP), which is also a vital cell wall component in Gram-negative bacteria . The production of dihydropicolinate from aspartate-semialdehyde controls flux into the lysine/diaminopimelic acid pathway. Three variants of this pathway exist, differing in how tetrahydropicolinate (formed by reduction of dihydropicolinate) is metabolised to meso-DAP. One variant, the most commonly found one in archaea and bacteria, uses primarily succinyl intermediates, while a second variant, found only in Bacillus, utilises primarily acetyl intermediates. In the third variant, found in some Gram-positive bacteria, a dehydrogenase converts tetrahydropicolinate directly to meso-DAP. In all variants meso-DAP is subsequently converted to lysine by a decarboxylase, or, in Gram-negative bacteria, assimilated into the cell wall. Evidence exists that a fourth, currently unknown, variant of this pathway may function in plants . This entry represents diaminopimelate epimerase (5.1.1.7 from EC), which catalyses the isomerisation of L,L-dimaminopimelate to meso-DAP in the biosynthetic pathway leading from aspartate to lysine. It is a member of the broader family of PLP-independent amino acid racemases. This enzyme is a monomeric protein of about 30 kDa consisting of two domains which are homologus in structure though they share little sequence similarity . Each domain consists of mixed beta-sheets which fold into a barrel around the central helix. The active site cleft is formed from both domains and contains two conserved cysteines thought to function as the acid and base in the catalytic reaction . Other PLP-independent racemases such as glutamate racemase have been shown to share a similar structure and mechanism of catalysis.; GO: 0008837 diaminopimelate epimerase activity, 0009089 lysine biosynthetic process via diaminopimelate.
Probab=100.00 E-value=0 Score=638.46 Aligned_cols=271 Identities=34% Similarity=0.620 Sum_probs=240.9
Q ss_pred CEEEEECCCCCCEEEEECCC--CCCCCC---HHHHHHHCC-CCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 11378517677389994778--887888---889987203-567143558998258888866899997178762123320
Q gi|254780710|r 6 VDFAKMEGIGNKILVIDMRG--CHDNIT---SDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGN 79 (296)
Q Consensus 6 i~F~Kmhg~GNDFiiiD~~~--~~~~~~---~~~i~~~~~-~~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGN 79 (296)
|.|+||||+||||||||.++ +..... ++.++.+|+ ++|+||||+|+++||.+..+|++|+|||||||+|+||||
T Consensus 1 ~~F~KmhGlGNDFv~v~~~~eL~~~~~~~~kp~~~~~vc~r~~G~GaDG~i~v~~P~s~~~D~~~~iFNsDGS~A~mCGN 80 (294)
T TIGR00652 1 MEFSKMHGLGNDFVLVDEFDELAELVKEEEKPEFVRQVCDRHFGVGADGVIFVEPPGSPEADYKMRIFNSDGSEAEMCGN 80 (294)
T ss_pred CEEEEEECCCCCEEEECCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCC
T ss_conf 92784321346579948904764421654338999999860481332527998569998863699999678980024766
Q ss_pred HHHHHHHHHHCCC--CCCEEEEEECCCCEEEEECCCC----EEEECCCCCCCCHHHCCCCCCCCCCCCCE-EECCCCCCC
Q ss_conf 3322311100135--7640379835883799985774----27740368777777685656565434430-110577774
Q gi|254780710|r 80 GMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDG----SISVDMGEPILDWKLIPLARSFDKMDRDR-FHIGPVNHL 152 (296)
Q Consensus 80 G~Rc~a~yl~~~~--~~~~~~i~T~~g~~~~~~~~~~----~v~V~mG~p~~~~~~ip~~~~~~~~~~~~-~~~~~~~~~ 152 (296)
|+||+|||++++. .+++++|+|.+|.+.++...++ .|+||||.|.+..+.+|+....+...... +.....
T Consensus 81 G~RC~~~f~~~~~~~~k~~~~v~T~~G~~~~~~~~~ng~v~~v~VdMG~p~~~~~~~p~~~~~~~~~~~~~~~~~~~--- 157 (294)
T TIGR00652 81 GIRCFAKFVYEHGLVEKKDIRVETLAGVIKLEVEEENGAVAKVKVDMGEPKFKKEEIPLTDKVEKFEEPEVLLFGEV--- 157 (294)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEEECCCEEEEEEEECCCCCCCHHCCCHHCCCCCCCCCCEEEEECC---
T ss_conf 78999999986223421106998617348999997288599999853775344100510015454554522431033---
Q ss_pred EECCEEEEECCCCEEEEECCCC--CCHHHHHHHHHCCCCCCCC-CCCCCEEEEEECCCCEEEEEECCCC-CCCCCCCHHH
Q ss_conf 0213099955874279742557--6868887631000233237-5555146799728872899980467-8766563235
Q gi|254780710|r 153 FLRNPFVVSMGNPHAIFFVEDD--LYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERG-VGLTAACGSA 228 (296)
Q Consensus 153 ~~~~~~~v~iGNPH~Vi~v~d~--i~~~~l~~~g~~i~~~~~F-p~gvNV~fv~v~~~~~I~iRt~ERG-vGeTlACGTG 228 (296)
.....++|||||||||+||+ | ++..++..+|+.||+|+.| |+||||+|+|++++++|++|||||| +|||+|||||
T Consensus 158 ~~~~~~~v~~GnPH~v~fv~-d~~~~~~~~~~lG~~~~~he~F~Peg~NV~Fv~~~~~~~i~~rtyERGV~G~T~ACGTG 236 (294)
T TIGR00652 158 QTLKLTAVDTGNPHLVVFVD-DLTVEGLDLTELGPLLEYHERFAPEGVNVNFVQVVGEDEIKLRTYERGVAGETLACGTG 236 (294)
T ss_pred CEEEEEEEECCCCEEEEECC-CCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCCCCCCCHH
T ss_conf 33799999659966999805-55646467567747765383557687238898976898899999880544554465147
Q ss_pred HHHHHHHHHH--HCCCCCC-EEEECCCCEEEEEEECCC--EEEEEECEEEEEEEEEE
Q ss_conf 8999999998--1788980-799907957999995898--19999462899988998
Q gi|254780710|r 229 ACASVVASGC--LHKTNRA-VSVKMLGGGLLIEWHDNN--HVFMTGEAKKEWEGKLD 280 (296)
Q Consensus 229 A~Asa~~~~~--~~~~~~~-v~V~~pGG~L~v~~~~~~--~i~l~Gpa~~vf~G~~~ 280 (296)
|||||+++.+ +++.+++ ++|+.|||.|.+.|.+++ ++||+|||++||+|.+.
T Consensus 237 a~A~a~aa~~~~~~~~~~~~~~V~~~gG~L~i~~~~~G~~~~ym~G~a~~V~~G~l~ 293 (294)
T TIGR00652 237 ACASAIAAVKIGLGLTDKKAVTVHLPGGELEIEWKEDGKHRVYMTGPAVRVFDGELF 293 (294)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCEEEEEECEEEEEEEEEC
T ss_conf 999999998752045688616898169829999972885114687044688855653
No 3
>PRK13577 diaminopimelate epimerase; Provisional
Probab=100.00 E-value=0 Score=618.68 Aligned_cols=269 Identities=29% Similarity=0.463 Sum_probs=241.0
Q ss_pred CEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHCCC-CCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 113785176773899947788878888899872035-6714355899825888886689999717876212332033223
Q gi|254780710|r 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84 (296)
Q Consensus 6 i~F~Kmhg~GNDFiiiD~~~~~~~~~~~~i~~~~~~-~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~Rc~ 84 (296)
|+|+||||+||||||+|.++....+++++++++|+| +||||||||++.+ ++..+||+|+|||+|||+|+|||||+||+
T Consensus 1 i~F~Kmhg~GNDFiiid~~~~~~~~~~~~i~~lc~R~~GIGaDglli~~~-~~~~~d~~m~ifNaDGS~AemCGNG~RCv 79 (281)
T PRK13577 1 MQFYKYHALGNDYLVIDPRDFPFDLSAEAIRLICHRHFGVGSDGILFGPL-ASEGADFGLRIFNPDGSEAEKSGNGLRIF 79 (281)
T ss_pred CCEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECC-CCCCCCEEEEEECCCCCHHHCCCCHHHHH
T ss_conf 90877744998199997899878999999998647687857786999548-88887669999938988786373889999
Q ss_pred HHHHHCC--CCCCEEEEEECCCCEEEEECCC-CEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEECCEEEEE
Q ss_conf 1110013--5764037983588379998577-427740368777777685656565434430110577774021309995
Q gi|254780710|r 85 VRFLTSR--MKRKSFTFETIRGILVAKENRD-GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161 (296)
Q Consensus 85 a~yl~~~--~~~~~~~i~T~~g~~~~~~~~~-~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (296)
|+|++++ ..++.++|+|.+|.+.++..++ ..|+|+||.|.|.|.++|+...........+.+... ...+++|+
T Consensus 80 a~~l~~~~~~~~~~~~i~T~~g~~~~~~~~~~~~i~V~mg~~~~~~~~ip~~~~~~~~~~~~~~~~~~----~~~~~~v~ 155 (281)
T PRK13577 80 SRYLWDQGLVDDEPFTIETKGGVVECQVLDAGRTVTVEMGKVSFLSTDIPVAGEDREVLNEKLDVDGR----RLTYCAAT 155 (281)
T ss_pred HHHHHHCCCCCCCCEEEEECCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCC----EEEEEEEE
T ss_conf 99999758778971899978964899994699689998888766600175445554211304886893----57899982
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 58742797425576868887631000233237555514679972887289998046787665632358999999998178
Q gi|254780710|r 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 (296)
Q Consensus 162 iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~~ 241 (296)
|||||||+|++ +++..++.++|+.+++|+.||+|+||+|++++++++|++||||||||||+||||||||+|++++++++
T Consensus 156 iGNPH~V~~v~-~~~~~~~~~~g~~ie~~~~FP~g~NV~fv~~~~~~~I~~Rt~ERGvGeTlACGTGA~AaA~~~~~~g~ 234 (281)
T PRK13577 156 IGNPHCVVLLD-EITEELARELGPLIETHPRFPNRTNVQFMKVIDRNTIQIEIWERGAGYTLASGSSSCAAAAVAHRLGL 234 (281)
T ss_pred CCCCEEEEEEC-CCCHHHHHHCCCHHCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 49971999962-54245576418510034447898589999993599699999946787553435789999999998088
Q ss_pred CCCCEEEECCCCEEEEEEECCCEEEEEECEEEEEEEEEE
Q ss_conf 898079990795799999589819999462899988998
Q gi|254780710|r 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 (296)
Q Consensus 242 ~~~~v~V~~pGG~L~v~~~~~~~i~l~Gpa~~vf~G~~~ 280 (296)
++++++|++|||.|.|+|.++++|+|+|||++||+|+++
T Consensus 235 ~~~~v~V~~~GG~L~v~~~~~~~v~ltGpa~~V~~G~i~ 273 (281)
T PRK13577 235 CDSSITVHMPGGQIDIEIKDDFHVSMTGPVTKIAEGSLS 273 (281)
T ss_pred CCCCEEEECCCCEEEEEECCCCEEEEECCCEEEEEEEEC
T ss_conf 999879994995899999379869999144999999999
No 4
>COG0253 DapF Diaminopimelate epimerase [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=589.01 Aligned_cols=268 Identities=40% Similarity=0.696 Sum_probs=242.0
Q ss_pred CEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHCCCC-CCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 1137851767738999477888788888998720356-714355899825888886689999717876212332033223
Q gi|254780710|r 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84 (296)
Q Consensus 6 i~F~Kmhg~GNDFiiiD~~~~~~~~~~~~i~~~~~~~-giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~Rc~ 84 (296)
|+|+||||+||||||+|.++.....+++.++.+|+|+ ||||||+|+|++|.+..+|++|+|||+|||+|+|||||+||+
T Consensus 1 ~~F~KmhG~GNdfivvd~~~~~~~~~~~~a~~l~~r~~giGaDgvl~v~~p~s~~~d~~~rifN~DGS~ae~CGNG~Rc~ 80 (272)
T COG0253 1 MEFSKMHGLGNDFIVVDEFDKKDEETPELARALCDRHFGIGADGVLFVEPPRSPGADFHLRIFNSDGSEAEMCGNGARCF 80 (272)
T ss_pred CCEEEECCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCHHHHCCCHHHHH
T ss_conf 90677758898599993665334368999999865536857753999925888898789999967988776255699999
Q ss_pred HHHHHCC--CCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEECCEEEEEC
Q ss_conf 1110013--57640379835883799985774277403687777776856565654344301105777740213099955
Q gi|254780710|r 85 VRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 (296)
Q Consensus 85 a~yl~~~--~~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 162 (296)
|+||+++ ..+++++|+|.+|++.++..+++.|+|+||.|.|.++.+|+... .. ...+... .....+++|+|
T Consensus 81 a~~l~~~~~~~~~~~~v~T~~G~~~~~~~~~~~v~VdMg~p~~~~~~ip~~~~--~~-~~~~~~~----~~~~~~~~vs~ 153 (272)
T COG0253 81 ARFLAERGLVKKKEISVETLAGILKVKVHDDNTVSVDMGLPSFKPAEIPLLEE--KV-EEQYGLG----EETVTFYAVSM 153 (272)
T ss_pred HHHHHHHCCCCCCCEEEEECCCEEEEEEEECCEEEEECCCCCCCCCCCCCHHH--HC-CCCCCCC----CCCEEEEEEEC
T ss_conf 99999853875751799952543899995087799986777526244772231--00-5510234----44204899966
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 87427974255768688876310002332375555146799728872899980467876656323589999999981788
Q gi|254780710|r 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 (296)
Q Consensus 163 GNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~~~ 242 (296)
||||+|+||+ |++..++..+|+++++|+.||+|+||+|+|++++++|++||||||+|||+|||||||||++++.+++++
T Consensus 154 GnPH~V~~Vd-dv~~~~~~~~g~~l~~~~~Fp~~vNV~F~~v~~~~~i~lrv~ERG~G~T~ACGTGa~Aa~~~a~~~~~~ 232 (272)
T COG0253 154 GNPHLVIFVD-DVETANLEELGPLLESHELFPEGVNVGFVQVLSRDAIRLRVYERGAGETLACGTGACAAAVVAARLGLL 232 (272)
T ss_pred CCCEEEEEEC-CCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9986999958-825233554234552375578842799999779992799993058830014651788999999981658
Q ss_pred CCCEEEECCCCEEEEEEECCC-EEEEEECEEEEEEEEEEE
Q ss_conf 980799907957999995898-199994628999889984
Q gi|254780710|r 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 (296)
Q Consensus 243 ~~~v~V~~pGG~L~v~~~~~~-~i~l~Gpa~~vf~G~~~i 281 (296)
+++++|++|||.|.|.|.+++ +++|+|||++||+|++.+
T Consensus 233 ~~~v~V~~pGG~L~i~~~~~g~~v~m~G~a~~v~~G~~~~ 272 (272)
T COG0253 233 DRKVTVHLPGGTLEIEWKDDGKPVYMTGPATRVAEGKLYI 272 (272)
T ss_pred CCCEEEECCCCEEEEEEECCCCEEEEEECEEEEEEEEECC
T ss_conf 9867999699749999986995299981579999108859
No 5
>pfam01678 DAP_epimerase Diaminopimelate epimerase. Diaminopimelate epimerase contains two domains of the same alpha/beta fold, both contained in this family.
Probab=99.95 E-value=1.6e-27 Score=201.25 Aligned_cols=116 Identities=29% Similarity=0.426 Sum_probs=103.1
Q ss_pred EEEECCCCCCEEEEECCCCCCCCCHHHHHHHCCC-CCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCH-HHHHH
Q ss_conf 3785176773899947788878888899872035-671435589982588888668999971787621233203-32231
Q gi|254780710|r 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNG-MRCVV 85 (296)
Q Consensus 8 F~Kmhg~GNDFiiiD~~~~~~~~~~~~i~~~~~~-~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG-~Rc~a 85 (296)
|.||||+|||||++|.++....++++.++++++| .++|+||+++++++. ..+++|++||+|||+++||||| +||++
T Consensus 1 f~K~~G~gn~fi~vd~~~~~~~~~~~~~~~l~~r~~~~g~dnv~~v~~~~--~~~~~~ri~n~dg~et~aCGnGa~rc~a 78 (121)
T pfam01678 1 FAKMHGNPHDVVVVDDVEGANLLEPELGPALCHRHFFPGADNVLFVQVSG--ELDIKMRIFNRDGSETEACGNGAVACFA 78 (121)
T ss_pred CCCEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEEECC--CCCEEEEEEECCCCHHHCCCCHHHHHHH
T ss_conf 97456899799999278777767888989865577799841489987168--8718999991899820235464799999
Q ss_pred HHHHCC--CCCCEEEEEECCCCEEEEECCCCEEEECCCCCCC
Q ss_conf 110013--5764037983588379998577427740368777
Q gi|254780710|r 86 RFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 (296)
Q Consensus 86 ~yl~~~--~~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~ 125 (296)
+|++++ ..++++.|+|.+|.+.++..+++.+.|+||+|.+
T Consensus 79 ~~~~~~~~~~~~~v~v~t~gG~l~v~~~~~~~v~v~~G~a~~ 120 (121)
T pfam01678 79 AAVYLGGLVTKKPVLVETPGGDLEIEVKDDGHVIVMMGPAVL 120 (121)
T ss_pred HHHHHCCCCCCCEEEEEECCEEEEEEEECCCCEEEEECCCEE
T ss_conf 999986998898799997991899999899989998358869
No 6
>pfam01678 DAP_epimerase Diaminopimelate epimerase. Diaminopimelate epimerase contains two domains of the same alpha/beta fold, both contained in this family.
Probab=99.89 E-value=7.1e-23 Score=170.69 Aligned_cols=113 Identities=30% Similarity=0.454 Sum_probs=97.8
Q ss_pred ECCCCEEEEECCCCCCHHHH--HHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 55874279742557686888--7631000233237555514679972887289998046787665632358999999998
Q gi|254780710|r 161 SMGNPHAIFFVEDDLYHYDL--ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 (296)
Q Consensus 161 ~iGNPH~Vi~v~d~i~~~~l--~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~ 238 (296)
..||||++++++ +++..++ ..+++.+++++.||.++||.|++..++..+++|+||||.|||+||||||||+++++..
T Consensus 4 ~~G~gn~fi~vd-~~~~~~~~~~~~~~~l~~r~~~~g~dnv~~v~~~~~~~~~~ri~n~dg~et~aCGnGa~rc~a~~~~ 82 (121)
T pfam01678 4 MHGNPHDVVVVD-DVEGANLLEPELGPALCHRHFFPGADNVLFVQVSGELDIKMRIFNRDGSETEACGNGAVACFAAAVY 82 (121)
T ss_pred EECCCCEEEEEE-CCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCHHHCCCCHHHHHHHHHHH
T ss_conf 568997999992-7877776788898986557779984148998716887189999918998202354647999999999
Q ss_pred HCCC--CCCEEEECCCCEEEEEEECCCE-EEEEECEEEE
Q ss_conf 1788--9807999079579999958981-9999462899
Q gi|254780710|r 239 LHKT--NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKE 274 (296)
Q Consensus 239 ~~~~--~~~v~V~~pGG~L~v~~~~~~~-i~l~Gpa~~v 274 (296)
.+.. +++++|+++||.|.++|.+++. +++.|||++|
T Consensus 83 ~~~~~~~~~v~v~t~gG~l~v~~~~~~~v~v~~G~a~~v 121 (121)
T pfam01678 83 LGGLVTKKPVLVETPGGDLEIEVKDDGHVIVMMGPAVLV 121 (121)
T ss_pred HCCCCCCCEEEEEECCEEEEEEEECCCCEEEEECCCEEC
T ss_conf 869988987999979918999998999899983588699
No 7
>pfam02567 PhzC-PhzF Phenazine biosynthesis-like protein. PhzC/PhzF is involved in dimerization of two 2,3-dihydro-3-oxo-anthranilic acid molecules to create PCA by P. fluorescens. This family also contains a putative thymidilate synthase from Mycobacterium tuberculosis, though there is no significant sequence similarity to pfam00303 members. This family appears to be distantly related to pfam01678, including containing a weak internal duplication. However members of this family do not contain the conserved cysteines that are hypothesized to be active site residues (Bateman A pers obs).
Probab=99.59 E-value=4.1e-12 Score=99.72 Aligned_cols=255 Identities=21% Similarity=0.185 Sum_probs=164.8
Q ss_pred EEEECCCCCCEEEE-ECCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 37851767738999-47788878888899872035671435589982588888668999971787621233203322311
Q gi|254780710|r 8 FAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86 (296)
Q Consensus 8 F~Kmhg~GNDFiii-D~~~~~~~~~~~~i~~~~~~~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~Rc~a~ 86 (296)
|+.=--.||==-++ | ...++.++.+.+++..+. -=-.||.++.+...||++|||.+. .|-.+||-++-..++
T Consensus 4 Ft~~~f~GNPaaVv~~----~~~Ls~~~mQ~IA~e~n~--SETaFv~~~~~~~~~~~lR~FTP~-~Ev~fcGHaTlaaa~ 76 (280)
T pfam02567 4 FTDSPFKGNPAAVVLD----ADELTDEEMQAIAAEFNL--SETAFVLPPSDEDADFRLRIFTPV-AEVPFCGHATLATAH 76 (280)
T ss_pred CCCCCCCCCEEEEEEC----CCCCCHHHHHHHHHHHCC--CEEEEEECCCCCCCCEEEEEECCC-CCCCCCCCHHHHHHH
T ss_conf 7599998631799988----989999999999998799--658997058888773699996785-413556660589999
Q ss_pred HHHCC--CCCCEEEEEECCCCEEEEECCC---CEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEECCEEEEE
Q ss_conf 10013--5764037983588379998577---427740368777777685656565434430110577774021309995
Q gi|254780710|r 87 FLTSR--MKRKSFTFETIRGILVAKENRD---GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161 (296)
Q Consensus 87 yl~~~--~~~~~~~i~T~~g~~~~~~~~~---~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (296)
+|++. .....+.++|.+|.+.++...+ ..+.+.|..|.+.+..++....... ................++
T Consensus 77 ~L~~~~~~~~~~~~~~t~~G~l~v~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~ 151 (280)
T pfam02567 77 ALFEEGGNGNKTLELETLAGIVPVKLVEGDGGAEGAIEMNFPEFDLPAVSREDDALL-----LAGIGLEFHEALPIAVKS 151 (280)
T ss_pred HHHHHCCCCCCEEEEECCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHH-----HHCCCCCCCCCCCEEEEE
T ss_conf 999837999987999937288999998158854899993799888767883555665-----416674202566628995
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEE-E--EEECCCCEEEEEECCCCCC--CCCCCHHHHHHHHHHH
Q ss_conf 587427974255768688876310002332375555146-7--9972887289998046787--6656323589999999
Q gi|254780710|r 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLS-I--ARVTSLESLDLRTWERGVG--LTAACGSAACASVVAS 236 (296)
Q Consensus 162 iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~-f--v~v~~~~~I~iRt~ERGvG--eTlACGTGA~Asa~~~ 236 (296)
.|+||+++.++ +.+ .|..+-+-++....+..+..+. + ....+...+..|.|--..| |--+|||++||-+.+.
T Consensus 152 ~G~~~l~v~l~-~~~--~l~~~~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~FaP~~Gi~EDpaTGSA~~aLa~yl 228 (280)
T pfam02567 152 TGLWHVFVPLK-SLE--ALAALDPDLDAAIADCPDDGVIVGPAASAGSPRDYHARMFAPALGIVEDPATGSAAGALGAYL 228 (280)
T ss_pred CCCCEEEEEEC-CHH--HHHHCCCCHHHHHHHCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 69977999969-999--998589997999845888679999961689875699981645679777676256579999999
Q ss_pred HHHCCCCC--CEEEEC-----CCCEEEEEEECCC----EEEEEECEEEEEEE
Q ss_conf 98178898--079990-----7957999995898----19999462899988
Q gi|254780710|r 237 GCLHKTNR--AVSVKM-----LGGGLLIEWHDNN----HVFMTGEAKKEWEG 277 (296)
Q Consensus 237 ~~~~~~~~--~v~V~~-----pGG~L~v~~~~~~----~i~l~Gpa~~vf~G 277 (296)
...+..+. .+.+.+ .+|.|.+++..++ .|++.|.|..+.+|
T Consensus 229 ~~~~~~~~~~~~~i~QG~~~gR~g~i~v~~~~~~~~~~~V~vgG~av~v~~G 280 (280)
T pfam02567 229 SRHGNKPQFGNIAIRQGQASGRPGTLEVEVEGRGGRDVRVRVTGRAVTVMEG 280 (280)
T ss_pred HHHCCCCCCCEEEEECCCCCCCCEEEEEEEEECCCCEEEEEEEEEEEEEEEC
T ss_conf 9846998774599988736089989999998279964589998189999879
No 8
>PRK10281 hypothetical protein; Provisional
Probab=99.52 E-value=2.8e-11 Score=94.23 Aligned_cols=262 Identities=16% Similarity=0.125 Sum_probs=155.3
Q ss_pred EEEECCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 37851767738999477888788888998720356714355899825888886689999717876212332033223111
Q gi|254780710|r 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87 (296)
Q Consensus 8 F~Kmhg~GNDFiiiD~~~~~~~~~~~~i~~~~~~~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~Rc~a~y 87 (296)
|+.=-=.||-=-++- ....++.++.+.+++..+. -=-.||.++.++..|+++|+|-+. .|-.+||-++-..++.
T Consensus 11 Ft~~~f~GNPaaVv~---~~~~L~~~~mq~IA~E~Nl--SETaFv~~~~~~~~~~~lR~FTP~-~Ev~fcGHaTlaa~~~ 84 (299)
T PRK10281 11 FTSQPFRGNSAGVVL---PADGLSEAQMQLIARELGH--SETAFLLSSDDSSYDVRVRYFTPT-VEVPICGHATVAAHYV 84 (299)
T ss_pred CCCCCCCCCEEEEEE---CCCCCCHHHHHHHHHHHCC--CEEEEEECCCCCCCCEEEEEECCC-CCCCCCCCHHHHHHHH
T ss_conf 649999962049997---8989899999999998799--559998057888771689997576-4145453067999999
Q ss_pred HHCC--CCCCEEEEEECCCCEEEEECCCC---EEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEECCEEEEEC
Q ss_conf 0013--57640379835883799985774---277403687777776856565654344301105777740213099955
Q gi|254780710|r 88 LTSR--MKRKSFTFETIRGILVAKENRDG---SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 (296)
Q Consensus 88 l~~~--~~~~~~~i~T~~g~~~~~~~~~~---~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 162 (296)
+... .....+.++|.+|.+.+.+..++ .+....+.|.+.+. +.........+-+.+...+...-.....+++
T Consensus 85 l~~~~~~~~~~~~~~t~~G~l~v~v~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~l~~algl~~~~i~~~~p~~~~~~ 161 (299)
T PRK10281 85 RATVLGLGNCTVWQTTGAGKLPVDIEKENNDYRISMTQGTPEFEPP---LEGETRAAIINALGLTEDDILPGLPIQVAST 161 (299)
T ss_pred HHHHCCCCCCEEEEECCCEEEEEEEEEECCEEEEEECCCCCCCCCC---CCCHHHHHHHHHHCCCHHHHCCCCCEEEEEC
T ss_conf 9972688995499981670799999950881699855898734699---8803299999873999689343798099975
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCC--CCCE-E-EEEECCCCE--EEEEECCCCCC--CCCCCHHHHHHHHH
Q ss_conf 874279742557686888763100023323755--5514-6-799728872--89998046787--66563235899999
Q gi|254780710|r 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE--GVNL-S-IARVTSLES--LDLRTWERGVG--LTAACGSAACASVV 234 (296)
Q Consensus 163 GNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~--gvNV-~-fv~v~~~~~--I~iRt~ERGvG--eTlACGTGA~Asa~ 234 (296)
|.+|+++.++ +.+ .|..+-|-++....+.. +++- . |......+. +..|.|--++| |--+|||++||-+.
T Consensus 162 G~~~llv~l~-~~~--~l~~l~Pd~~~l~~l~~~~~~~g~~v~~~~~~~~~~~~~~R~FaP~~Gi~EDPaTGSA~~~La~ 238 (299)
T PRK10281 162 GHSKVMIPLK-PEV--DLDALSPNLAALTAISKQIGCNGFFPFQIRPGKNEILTDGRMFSPAIGIVEDPVTGNANGPMGA 238 (299)
T ss_pred CCCEEEEEEC-CHH--HHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf 9975999989-999--9973799989999878743963799999857887617999977665699756664321467799
Q ss_pred HHHHHCCCCC-----CEEEEC-----CCCEEEEEEECC-C---EEEEEECEEEEEEEEEEE
Q ss_conf 9998178898-----079990-----795799999589-8---199994628999889984
Q gi|254780710|r 235 ASGCLHKTNR-----AVSVKM-----LGGGLLIEWHDN-N---HVFMTGEAKKEWEGKLDI 281 (296)
Q Consensus 235 ~~~~~~~~~~-----~v~V~~-----pGG~L~v~~~~~-~---~i~l~Gpa~~vf~G~~~i 281 (296)
+....++... .+.+++ ..|.+.+++..+ + .|++.|.|..|++|+|.|
T Consensus 239 yL~~~~~~~~~~~~~~~~~~QG~~~gR~s~i~v~v~~~~~~~~~V~vgG~av~v~~Ge~~i 299 (299)
T PRK10281 239 YLVHHNLLPHDGKVLRFKGHQGRALGRDGVIEVTVTIRDNQPEKVTISGQAVILFHAEWAI 299 (299)
T ss_pred HHHHCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEEEEEEEEEEEC
T ss_conf 9987585767777307999930164898489999996699766899988999999989989
No 9
>COG0384 Predicted epimerase, PhzC/PhzF homolog [General function prediction only]
Probab=99.39 E-value=1.3e-09 Score=83.30 Aligned_cols=261 Identities=19% Similarity=0.191 Sum_probs=165.5
Q ss_pred EEEECCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 37851767738999477888788888998720356714355899825888886689999717876212332033223111
Q gi|254780710|r 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87 (296)
Q Consensus 8 F~Kmhg~GNDFiiiD~~~~~~~~~~~~i~~~~~~~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~Rc~a~y 87 (296)
|+.=--.||---++. ....++..+.+++++..+. ---.||.++.++ +|+++|||-+++-. .+||-.+-..++.
T Consensus 12 Ft~~~~~GNp~aVv~---~a~~Lsd~~MQ~IA~e~n~--SET~Fv~~~~~~-~~~rlR~FTP~~Ev-pf~GHaTlga~~~ 84 (291)
T COG0384 12 FTSKPFGGNPLAVVL---DADGLSDEQMQAIAREFNL--SETAFVLPPDDP-ADARLRIFTPTTEV-PFAGHATLGAAHV 84 (291)
T ss_pred ECCCCCCCCCEEEEE---CCCCCCHHHHHHHHHHHCC--CEEEEECCCCCC-CCEEEEEECCCCCC-CCCCCHHHHHHHH
T ss_conf 337898998229981---8999999999999998499--616997278886-71489996787514-6688777999999
Q ss_pred HHCC---CCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEECCEEEEECCC
Q ss_conf 0013---5764037983588379998577427740368777777685656565434430110577774021309995587
Q gi|254780710|r 88 LTSR---MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 (296)
Q Consensus 88 l~~~---~~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iGN 164 (296)
+++. .....+.++|.+|.+.+....++.- ..|..|.+.....+-. +...+ .+-+.+...+-.....+..+++|-
T Consensus 85 l~~~~~~~~~~~~~~e~~aG~v~i~~~~~~~~-~~~~~p~~~~~~~~~~-~~~~l-a~aLgL~~~~~~~~~~~~~~stG~ 161 (291)
T COG0384 85 LAELGGLSNDTTLTLETKAGLVPVTVERGGGQ-AEFDLPQLPPPEEIEA-EPAEL-AEALGLEEDDLLPEHPPQVVSTGL 161 (291)
T ss_pred HHHHCCCCCCCEEEEEECCCEEEEEEEECCCC-EEECCCCCCCCCCCCC-CHHHH-HHHCCCCHHHCCCCCCCEEEECCC
T ss_conf 99744888662499991467189999967883-3673688888666654-78999-987399947824246843750698
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCC-CCCCEEEEE---ECCCCEEEEEECCCCC--CCCCCCHHHHHHHHHHHHH
Q ss_conf 427974255768688876310002332375-555146799---7288728999804678--7665632358999999998
Q gi|254780710|r 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFS-EGVNLSIAR---VTSLESLDLRTWERGV--GLTAACGSAACASVVASGC 238 (296)
Q Consensus 165 PH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp-~gvNV~fv~---v~~~~~I~iRt~ERGv--GeTlACGTGA~Asa~~~~~ 238 (296)
||+++.++ +.+. +..+-+-.......+ .+.++-.+. ...+..+..|-|==+. -|--++||++|+-+.+...
T Consensus 162 ~~l~v~l~-s~~a--v~~~~pd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~R~FaP~~Gi~EDPaTGSA~~~La~yl~~ 238 (291)
T COG0384 162 PDLLVPLE-SLEA--LDALRPDFSALTELSAGGGGVYVFAREGAGAEADFHARMFAPGIGVVEDPATGSAAGALAAYLAK 238 (291)
T ss_pred CEEEEEEC-CHHH--HHHCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 61899918-8899--97669887998752336662599974057887758998135324887777764546589999998
Q ss_pred HCCC--CCCEEEEC-----CCCEEEEEEECC---CEEEEEECEEEEEEEEEEE
Q ss_conf 1788--98079990-----795799999589---8199994628999889984
Q gi|254780710|r 239 LHKT--NRAVSVKM-----LGGGLLIEWHDN---NHVFMTGEAKKEWEGKLDI 281 (296)
Q Consensus 239 ~~~~--~~~v~V~~-----pGG~L~v~~~~~---~~i~l~Gpa~~vf~G~~~i 281 (296)
.+.. ..++.+++ ..|.|.+++... ..|++.|.|..+++|++.|
T Consensus 239 ~~~~~~~~~~~~~QG~~~gR~s~i~~~~~~~~~~~~v~vgG~av~~~~g~l~l 291 (291)
T COG0384 239 HGGLPDKLRLLIEQGTELGRPSRIEVRVDEDGNKEAVRVGGRAVTVAEGELEL 291 (291)
T ss_pred HCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCEEEEEEEEEEEEEEEEEEC
T ss_conf 68888765389982323699848999996368814799811899987778819
No 10
>KOG3033 consensus
Probab=99.17 E-value=5.8e-09 Score=78.99 Aligned_cols=262 Identities=18% Similarity=0.244 Sum_probs=160.5
Q ss_pred EEEECCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCC-CCCCCEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 3785176773899947788878888899872035671435589982588-888668999971787621233203322311
Q gi|254780710|r 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DASVDAFIRIINCDGSEVQSCGNGMRCVVR 86 (296)
Q Consensus 8 F~Kmhg~GNDFiiiD~~~~~~~~~~~~i~~~~~~~giG~Dgli~i~~~~-~~~~d~~m~~fN~DGS~A~mCGNG~Rc~a~ 86 (296)
|++--=.||- ..+-... +...+.+..|.+++.+.+-=-- |+.|+. +...+|.+|.|-+ -+|-..||-++-.-|+
T Consensus 13 ft~~~f~gnp-aav~~l~-ene~d~e~Lq~iA~efNlSET~--Fl~pi~~~~~~~f~LRwFTp-~aEvplcGHaTLasah 87 (286)
T KOG3033 13 FTEKAFKGNP-AAVCFLE-ENERDDEYLQSIAAEFNLSETA--FLIPIGGKKCSRFSLRWFTP-TAEVPLCGHATLASAH 87 (286)
T ss_pred EECCCCCCCC-CEEEECC-CCCCCHHHHHHHHHHHCCCCCE--EEECCCCCCCCCEEEEEECC-CCCCCCCCCCHHHHHH
T ss_conf 3132025996-1224222-3001699999998761864305--54337877555235787334-3337646761366778
Q ss_pred HHHCC--CCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEECCEEEEECCC
Q ss_conf 10013--5764037983588379998577427740368777777685656565434430110577774021309995587
Q gi|254780710|r 87 FLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 (296)
Q Consensus 87 yl~~~--~~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iGN 164 (296)
-|..+ ...+++.++|.+|++.++.+..+. ++|-.|.++...|-...+...+ +.. .....+.......-+++
T Consensus 88 vlf~~~~n~n~~l~f~t~sG~l~akrd~~~~--ieln~P~y~~~si~~~~~~~~~----fsk-a~~~~~i~dv~~~~~~~ 160 (286)
T KOG3033 88 VLFNEIGNVNKELKFDTLSGILTAKRDELGS--IELNFPEYDTTSINISNELEGI----FSK-AEGPAFIFDVIKCVTPT 160 (286)
T ss_pred HHHHHCCCCCCEEEEEEECCEEEEEECCCCC--EEECCCCCCCCCCCCCCHHHHH----HHH-HHCCCEECCCHHCCCCC
T ss_conf 8887526775159998411369998525651--6871675443144335067999----998-62875551511046898
Q ss_pred C-EEEEECCCCCCHHHHHHHHHCCCCCCCCC-CCCCEEEEEECC-CCEEEEEECC--CCCCCCCCCHHHHHHHHHHHH-H
Q ss_conf 4-27974255768688876310002332375-555146799728-8728999804--678766563235899999999-8
Q gi|254780710|r 165 P-HAIFFVEDDLYHYDLASFGNLLAKHPMFS-EGVNLSIARVTS-LESLDLRTWE--RGVGLTAACGSAACASVVASG-C 238 (296)
Q Consensus 165 P-H~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp-~gvNV~fv~v~~-~~~I~iRt~E--RGvGeTlACGTGA~Asa~~~~-~ 238 (296)
| -+++.+++.-..++++-.--.+..+..=| +++-|.|+--.+ +.....|-|- -||.|--+||||.||.+-+-. .
T Consensus 161 p~~liVvl~~~~t~~elep~~~d~~di~~~p~~~~~v~~~g~~g~~~dy~~RyFAP~~GVnEDPvtGSa~caL~~yws~~ 240 (286)
T KOG3033 161 PRKLIVVLDPWETVFELEPNRIDISDISTCPNNGMIVTFAGSSGSPYDYESRYFAPWVGVNEDPVTGSAHCALGPYWSLI 240 (286)
T ss_pred CCEEEEEECCCCEEEECCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEHHHHHHHH
T ss_conf 74599995783204634702422346542898724899766999987667651244004567888871456337779987
Q ss_pred HCCCCC-CEEEE-CCCCEEEEEEECCC-EEEEEECEEEEEEEEEEE
Q ss_conf 178898-07999-07957999995898-199994628999889984
Q gi|254780710|r 239 LHKTNR-AVSVK-MLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 (296)
Q Consensus 239 ~~~~~~-~v~V~-~pGG~L~v~~~~~~-~i~l~Gpa~~vf~G~~~i 281 (296)
+++.+. ..... ..||.++++++++. .++|.|+|..|-+|++.+
T Consensus 241 ~~k~~~~afqas~~Rgg~~rv~l~~ea~rV~l~G~avtVl~G~i~v 286 (286)
T KOG3033 241 LGKKDFYAFQASPTRGGLFRVSLKKEAQRVILNGGAVTVLRGEILV 286 (286)
T ss_pred CCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCEEEEEEEEEC
T ss_conf 2842300010024678379999847760899549818998558859
No 11
>TIGR00654 PhzF_family phenazine biosynthesis protein PhzF family; InterPro: IPR003719 Five genes, phzF, phzA, phzB, phzC and phzD, encode enzymes for phenazine biosynthesis in the biological control bacterium Pseudomonas chlororaphis (Pseudomonas aureofaciens). Protein PhzF is similar to 3-deoxy-D-arabino-heptulosonate-7-phosphate synthases of solanaceous plants. PhzC is responsible for the conversion of phenazine-I-carboxylic acid to 2-hydroxy-phenazine-I-carboxylic acid .; GO: 0003824 catalytic activity, 0009058 biosynthetic process.
Probab=99.04 E-value=1.6e-07 Score=69.51 Aligned_cols=265 Identities=17% Similarity=0.167 Sum_probs=170.2
Q ss_pred EEEECCCCCCEEEEECCCC-CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 3785176773899947788-878888899872035671435589982588888668999971787621233203322311
Q gi|254780710|r 8 FAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86 (296)
Q Consensus 8 F~Kmhg~GNDFiiiD~~~~-~~~~~~~~i~~~~~~~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~Rc~a~ 86 (296)
|+--=+-||---+|..-+. +.+++.++.++++++.|. -=-.||.+|.++..|+++|||-+ ++|-.+||-.+=...+
T Consensus 11 FT~~pF~GNp~aV~~~~e~dene~s~~~mQ~IA~~~ny--SET~F~~~P~~~~~d~~LR~FTP-~~El~~aGHaTigs~y 87 (314)
T TIGR00654 11 FTSQPFKGNPAAVVLDAEDDENELSEEEMQLIAEEINY--SETAFLLKPVSEKADLRLRIFTP-KSELPFAGHATIGSLY 87 (314)
T ss_pred EECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC--CEEEEEECCCCCCCCEEEEEECC-CCCCCCCCCHHHHHHH
T ss_conf 74689898744887057687000587899999997188--40255317878766637887648-7534777864389999
Q ss_pred HH--HCC---CCCCEEEEEECCCCEEEEECCC-C--EEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEE-CCE
Q ss_conf 10--013---5764037983588379998577-4--2774036877777768565656543443011057777402-130
Q gi|254780710|r 87 FL--TSR---MKRKSFTFETIRGILVAKENRD-G--SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFL-RNP 157 (296)
Q Consensus 87 yl--~~~---~~~~~~~i~T~~g~~~~~~~~~-~--~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~-~~~ 157 (296)
.+ .+. ...+.+.+++..|.+.+++... + .++..-+.|.|.++ ++.+...-..+-+.+..-+.... ...
T Consensus 88 ~~Gl~~~~~~~~~~t~~~~~~~G~~Pvti~~~~g~l~is~~~~~~~f~~~---~~~~~~~~l~~aLGLt~d~~~~~elpi 164 (314)
T TIGR00654 88 ALGLLEVTKLEVATTLVQEEKAGLVPVTIEEKDGQLRISLEQAAPDFEPK---LSGESRADLAKALGLTEDDFLKGELPI 164 (314)
T ss_pred HHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCCCC---CCHHHHHHHHHHHCCCHHHHCCCCCCC
T ss_conf 87620057875102388703676056788615892788600258888889---876889999998387756816887660
Q ss_pred EEEECCCCEEEEECCCCCC----HHHHHHHHHCCC---CCCCCCCCCCEEEEEECCCCE---EEEEECC-CCCC--CCCC
Q ss_conf 9995587427974255768----688876310002---332375555146799728872---8999804-6787--6656
Q gi|254780710|r 158 FVVSMGNPHAIFFVEDDLY----HYDLASFGNLLA---KHPMFSEGVNLSIARVTSLES---LDLRTWE-RGVG--LTAA 224 (296)
Q Consensus 158 ~~v~iGNPH~Vi~v~d~i~----~~~l~~~g~~i~---~~~~Fp~gvNV~fv~v~~~~~---I~iRt~E-RGvG--eTlA 224 (296)
.+.++|-+-+++.+++..+ .+|...+...+. +.-.||-+..-. ...++. +..|-|= =+.| |=-+
T Consensus 165 ~~~~tG~~~~~ipl~~~e~~~~~~P~~~~l~~~~~~~~~~gv~~~~~~~~---~~~~~~nkl~~gR~FasP~~gi~EDPv 241 (314)
T TIGR00654 165 QLLSTGLEFVVIPLKDEEALKKLSPDLKVLAELLKKLDKDGVYPFAPKKE---AAGKSDNKLLHGRMFASPVIGIVEDPV 241 (314)
T ss_pred EEECCCCEEEEEECCCHHHHHHHCCCHHHHHHHHHCCCCCEEEECCCCCC---CCCCCCCHHHCCEEECCCCCCCEECCC
T ss_conf 45406753798851786998651788889999985078765886366776---788763101026000278776255572
Q ss_pred CHHHHHHHHHHHHHHCCC--CCCEEEE----CCCC------EEEEEEE--CC--CEEEEEECEEEEEEEEEEE
Q ss_conf 323589999999981788--9807999----0795------7999995--89--8199994628999889984
Q gi|254780710|r 225 CGSAACASVVASGCLHKT--NRAVSVK----MLGG------GLLIEWH--DN--NHVFMTGEAKKEWEGKLDI 281 (296)
Q Consensus 225 CGTGA~Asa~~~~~~~~~--~~~v~V~----~pGG------~L~v~~~--~~--~~i~l~Gpa~~vf~G~~~i 281 (296)
||||..|-+.++.-.+.. .+++.|. -.|+ .+.+... ++ ..+.++|-|+++++|.|+|
T Consensus 242 tG~g~~~lg~YL~~~~~~~~~h~~~i~rvkGhqG~~Lgr~g~~~~~v~~~~~~~~~v~iaG~Av~~~~~~~~~ 314 (314)
T TIGR00654 242 TGSGSGALGAYLKHVLDNEKSHDITIERVKGHQGKALGRDGKLEVTVKKEGDNSEKVKIAGTAVLVIEGKLKI 314 (314)
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEEEEEEEEEECC
T ss_conf 1565367778898750686675348998505567301789618999994178847999977899875224519
No 12
>PRK13969 proline racemase; Provisional
Probab=98.76 E-value=2.6e-05 Score=54.87 Aligned_cols=266 Identities=13% Similarity=0.138 Sum_probs=141.7
Q ss_pred CCCCEEEEECCCCCCEEEEE-CCCCCCCCCH-----------HHHH-HHCC-CCCC-CCCEEEEEECCCCCCCCEEEEEE
Q ss_conf 75411378517677389994-7788878888-----------8998-7203-5671-43558998258888866899997
Q gi|254780710|r 3 SSMVDFAKMEGIGNKILVID-MRGCHDNITS-----------DAIN-ALST-DDNT-HFDQIMLIHDFQDASVDAFIRII 67 (296)
Q Consensus 3 ~~mi~F~Kmhg~GNDFiiiD-~~~~~~~~~~-----------~~i~-~~~~-~~gi-G~Dgli~i~~~~~~~~d~~m~~f 67 (296)
+.+|+-.-||..|.=+=||- .......-+- +.+| .|.. -+|- .-=|- +|.||.++.+|+-+-|+
T Consensus 4 ~~~i~~iD~Ht~GEP~RiV~~G~p~l~G~t~~ekr~~~~~~~D~lR~~Lm~EPRGh~~M~Ga-ll~pp~~~~Ad~Gvif~ 82 (335)
T PRK13969 4 IKTIQTIESHTMGEPTRIVIGGLPKVPGKTMAEKMEYLEENNDSLRTMLMSEPRGHNDMFGA-IYTEPADETADLGIIFM 82 (335)
T ss_pred CEEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE-EEECCCCCCCCEEEEEE
T ss_conf 31788996557988757997398899999999999999866579999976089988761789-97089998888899999
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHCC--C----CCCEEEEEECCCCEEEEEC-CCCE-EEECC-CCCCCCHH-HCCCCCCCC
Q ss_conf 178762123320332231110013--5----7640379835883799985-7742-77403-68777777-685656565
Q gi|254780710|r 68 NCDGSEVQSCGNGMRCVVRFLTSR--M----KRKSFTFETIRGILVAKEN-RDGS-ISVDM-GEPILDWK-LIPLARSFD 137 (296)
Q Consensus 68 N~DGS~A~mCGNG~Rc~a~yl~~~--~----~~~~~~i~T~~g~~~~~~~-~~~~-v~V~m-G~p~~~~~-~ip~~~~~~ 137 (296)
+++|-. .|||-|+=|++.+|.+. . +..++.|+|.+|++.++.. .+++ .+|.+ -.|+|..+ ++++..+
T Consensus 83 ~~~gy~-~McGh~tI~~~t~lve~G~v~~~~p~t~v~ietPaGlV~a~~~~~~gkv~~V~f~nVPsf~~~~d~~v~vp-- 159 (335)
T PRK13969 83 DGGGYL-NMCGHGSIGAATCAVEMGIVKVEEPYTNIKLEAPAGMINARVKVEDGKAKETSIVNVPAFLYKKDVEIDVP-- 159 (335)
T ss_pred ECCCCC-CCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEEEEEECHHHHCCCEEECC--
T ss_conf 378677-54353278888899985971466896589998689529999999289502899997401464379689878--
Q ss_pred CCCCCEEECCCCCCCEECCEEEEECCCCEEEEECC------CCCCHHHHHHHHHCCC---------CCCCCCCCCCEEEE
Q ss_conf 43443011057777402130999558742797425------5768688876310002---------33237555514679
Q gi|254780710|r 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE------DDLYHYDLASFGNLLA---------KHPMFSEGVNLSIA 202 (296)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~v~iGNPH~Vi~v~------d~i~~~~l~~~g~~i~---------~~~~Fp~gvNV~fv 202 (296)
.... .. .-...=||-=+++-.+ +.-+.-+|.++|..|+ .||..|..-.+.++
T Consensus 160 ~~G~--v~-----------vDiayGG~fyaiVd~~~lgl~l~~~~~~~l~~~g~~I~~a~~~~~~~~hP~~~~i~~i~~v 226 (335)
T PRK13969 160 DYGK--LT-----------LDISFGGSFFAMVDAEKVGIDISPANSQKLNDLGMKIVHAVNEQVEIKHPVLEHIKTVDLC 226 (335)
T ss_pred CCCC--EE-----------EEEEECCEEEEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
T ss_conf 9775--79-----------9997266389998789939876832799999999999999986537879887777716899
Q ss_pred EECCCCE-----E-EEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCEEEECCCCEE-EEEE------ECCCE--E
Q ss_conf 9728872-----8-999804678766563235899999999817889--807999079579-9999------58981--9
Q gi|254780710|r 203 RVTSLES-----L-DLRTWERGVGLTAACGSAACASVVASGCLHKTN--RAVSVKMLGGGL-LIEW------HDNNH--V 265 (296)
Q Consensus 203 ~v~~~~~-----I-~iRt~ERGvGeTlACGTGA~Asa~~~~~~~~~~--~~v~V~~pGG~L-~v~~------~~~~~--i 265 (296)
...++.. . .+-+|=-|.=----||||.+|-.+..+..|++. .+...+..=|.. ..+. .+-.- .
T Consensus 227 ~~~~~~~~~~~~~rn~vv~~~g~iDRSPcGTGtSARlA~l~a~G~l~~ge~~~~eSIiGs~F~~~i~~~t~~g~~~aVip 306 (335)
T PRK13969 227 EFYGPAKSEDADVQNVVVFGQGQVDRSPCGTGTSAKMALLYAQGKMKVGEEIVNESIICTKFKGKILEETKVGEYDGIIP 306 (335)
T ss_pred EECCCCCCCCCCEEEEEEECCCCEECCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCCCEEEE
T ss_conf 98079888887615689989982626887512899999999769977999099996028769999999999889587999
Q ss_pred EEEECEEEEEEEEEEECCCC
Q ss_conf 99946289998899841320
Q gi|254780710|r 266 FMTGEAKKEWEGKLDIKTGK 285 (296)
Q Consensus 266 ~l~Gpa~~vf~G~~~i~~~~ 285 (296)
..+|.|-..-+.++-+...+
T Consensus 307 ~I~G~A~itG~~~~~~d~~D 326 (335)
T PRK13969 307 EITGSAYVTGFSQFLVDEED 326 (335)
T ss_pred EEEEEEEEEEEEEEEECCCC
T ss_conf 99999999998899967999
No 13
>PRK13971 hydroxyproline-2-epimerase; Provisional
Probab=98.67 E-value=2.9e-05 Score=54.55 Aligned_cols=273 Identities=15% Similarity=0.121 Sum_probs=140.1
Q ss_pred CCCCCCEEEEECCCCCCEEEEEC-CCCCCCCCHHH-----------HH-HHCC-CCCC-CCCEEEEEECCCCCCCCEEEE
Q ss_conf 98754113785176773899947-78887888889-----------98-7203-5671-435589982588888668999
Q gi|254780710|r 1 MQSSMVDFAKMEGIGNKILVIDM-RGCHDNITSDA-----------IN-ALST-DDNT-HFDQIMLIHDFQDASVDAFIR 65 (296)
Q Consensus 1 ~~~~mi~F~Kmhg~GNDFiiiD~-~~~~~~~~~~~-----------i~-~~~~-~~gi-G~Dgli~i~~~~~~~~d~~m~ 65 (296)
|-..|+.-.-||..|.=+=||-. ......-+-.. +| .|+. -+|- .-=|- +|.||.++.+|+-+-
T Consensus 1 ~~~~~~~~ID~Ht~GEp~RII~~G~p~l~G~T~~ekr~~~~~~~D~lR~~Lm~EPRGh~~M~Ga-ll~pp~~~~Ad~Gvi 79 (333)
T PRK13971 1 MMRHTFFCIDGHTCGNPVRLVAGGGPLLEGATMSEKRAHFLREYDWIRTALMFEPRGHDMMSGS-ILYPPTRPDCDAAIL 79 (333)
T ss_pred CCCCEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE-EEECCCCCCCCEEEE
T ss_conf 9652689996568988768997088899998999999999875368999975678888741889-981899987888999
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHCC--C---CCCEEEEEECCCCEEEEECCC-C-EEEECC-CCCCCCHH-HCCCCCCC
Q ss_conf 97178762123320332231110013--5---764037983588379998577-4-277403-68777777-68565656
Q gi|254780710|r 66 IINCDGSEVQSCGNGMRCVVRFLTSR--M---KRKSFTFETIRGILVAKENRD-G-SISVDM-GEPILDWK-LIPLARSF 136 (296)
Q Consensus 66 ~fN~DGS~A~mCGNG~Rc~a~yl~~~--~---~~~~~~i~T~~g~~~~~~~~~-~-~v~V~m-G~p~~~~~-~ip~~~~~ 136 (296)
|++++|.. .|||-|+=|++.+|.+. . ....+.|+|.+|++.++...+ + ..+|.+ -.|+|... ++++..+
T Consensus 80 f~~~~gy~-~McGh~tI~~~t~lve~G~v~~~ep~~v~ietPaG~V~v~~~~~~gkv~~V~f~nVPsf~~~~d~~V~vp- 157 (333)
T PRK13971 80 FIETSGCL-PMCGHGTIGTVTAAIEEGLVTPKEPGKLTIDTPAGQVDIEYEQDGEKVESVRLTNVPSYLHAEDVEVEVP- 157 (333)
T ss_pred EEECCCCC-CCCCCCHHEEEHHHHHCCCCCCCCCCEEEEECCCEEEEEEEEECCCEEEEEEEEEEEHHHHHCCCEEECC-
T ss_conf 99278776-6425430012226888598567898579986683689999998599288999996143574489689889-
Q ss_pred CCCCCCEEECCCCCCCEECCEE-EEECCCCEEEEECCCCCCHHHHHHHHHCCCC---------CCCCCCCCCEEEEEECC
Q ss_conf 5434430110577774021309-9955874279742557686888763100023---------32375555146799728
Q gi|254780710|r 137 DKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYDLASFGNLLAK---------HPMFSEGVNLSIARVTS 206 (296)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~-~v~iGNPH~Vi~v~d~i~~~~l~~~g~~i~~---------~~~Fp~gvNV~fv~v~~ 206 (296)
.... ... +-.+-..+| +|+. .++=+-+ +..+.-+|..+|..|+. ||..|+---+.++...+
T Consensus 158 -g~G~--v~v---DiayGG~~yaiVda--~~~g~~l-~~~~~~~l~~~g~~ik~a~~~~~~~~hP~~~~i~~i~~v~~~~ 228 (333)
T PRK13971 158 -GLGP--LKV---DVAYGGNFYAIVEP--QENFPGL-DHWSAADILAWSPVLRQALNEKYEFVHPDDPRIRGVSHVLWTG 228 (333)
T ss_pred -CCCC--EEE---EEEECCEEEEEEEH--HHCCCCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEC
T ss_conf -9775--789---99826648999867--8937776-8458999999999999999854577588887657604899955
Q ss_pred CC-----E-EEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCEEEECCCCEE-E--E----EEECCCE--EEEEE
Q ss_conf 87-----2-8999804678766563235899999999817889--807999079579-9--9----9958981--99994
Q gi|254780710|r 207 LE-----S-LDLRTWERGVGLTAACGSAACASVVASGCLHKTN--RAVSVKMLGGGL-L--I----EWHDNNH--VFMTG 269 (296)
Q Consensus 207 ~~-----~-I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~~~~--~~v~V~~pGG~L-~--v----~~~~~~~--i~l~G 269 (296)
+. . =.+-+|--|.=----||||.+|-.+..+..|++. .+..-++.=|.. . + ++.+..- ...+|
T Consensus 229 ~~~~~~~~~rn~v~~~~g~iDRSPcGTGtsARlA~l~a~G~l~~ge~~~~eSIiGs~F~~~i~~~~~vg~~~aVip~I~G 308 (333)
T PRK13971 229 KPISPGADGRNAVFYGDKAIDRSPCGTGTSARMAQLAAKGKLKVGDEFVHESIIGSLFEGRVEAAATVGGRPAILPSIAG 308 (333)
T ss_pred CCCCCCCCEEEEEEECCCCEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCCCEEEEEEEE
T ss_conf 89887776168999699845448872518999999997799779985999842588099999999998992789999999
Q ss_pred CEEEEEEEEEEECCCC
Q ss_conf 6289998899841320
Q gi|254780710|r 270 EAKKEWEGKLDIKTGK 285 (296)
Q Consensus 270 pa~~vf~G~~~i~~~~ 285 (296)
.|-..-+.++-+...+
T Consensus 309 ~A~itG~~~f~~d~~D 324 (333)
T PRK13971 309 WARVTGHNTIFVDDRD 324 (333)
T ss_pred EEEEEEEEEEEECCCC
T ss_conf 9999998899977999
No 14
>pfam05544 Pro_racemase Proline racemase. This family consists of proline racemase (EC 5.1.1.4) proteins which catalyse the interconversion of L- and D-proline in bacteria. This family also contains several similar eukaryotic proteins including a sequence with B-cell mitogenic properties which has been characterized as a co-factor-independent proline racemase.
Probab=98.66 E-value=1.9e-05 Score=55.78 Aligned_cols=259 Identities=17% Similarity=0.139 Sum_probs=136.9
Q ss_pred EECCCCCCEEEEE-CCCCCCCCCH-----------HHHH-HHCCC-CCCC-CCEEEEEECCCCCCCCEEEEEEECCCCCC
Q ss_conf 8517677389994-7788878888-----------8998-72035-6714-35589982588888668999971787621
Q gi|254780710|r 10 KMEGIGNKILVID-MRGCHDNITS-----------DAIN-ALSTD-DNTH-FDQIMLIHDFQDASVDAFIRIINCDGSEV 74 (296)
Q Consensus 10 Kmhg~GNDFiiiD-~~~~~~~~~~-----------~~i~-~~~~~-~giG-~Dgli~i~~~~~~~~d~~m~~fN~DGS~A 74 (296)
-+|..|.=+=||- .......-+- +.+| .|+.. +|-. -=|- +|.||.++.+|+-+-|++++|..
T Consensus 3 D~Ht~GEp~RiV~~G~p~l~G~T~~Ek~~~~~~~~D~lR~~Lm~EPRGh~~M~g~-ll~pp~~~~Ad~Gvif~~~~gy~- 80 (325)
T pfam05544 3 DSHTEGEPGRVVVGGVPPLPGATMAEKRRYFARDHDHLRRFLMFEPRGHDMMSGA-LLVPPKRPDADAGVIFMEPSGYL- 80 (325)
T ss_pred EECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE-EECCCCCCCCCEEEEEEECCCCC-
T ss_conf 0116998768997187899999999999999874689999975189988750889-97089998877899998367566-
Q ss_pred CCCCCHHHHHHHHHHCC--C----CCCEEEEEECCCCEEEEECC-CCE-EEECC-CCCCCCHH-HCCCCCCCCCCCCCEE
Q ss_conf 23320332231110013--5----76403798358837999857-742-77403-68777777-6856565654344301
Q gi|254780710|r 75 QSCGNGMRCVVRFLTSR--M----KRKSFTFETIRGILVAKENR-DGS-ISVDM-GEPILDWK-LIPLARSFDKMDRDRF 144 (296)
Q Consensus 75 ~mCGNG~Rc~a~yl~~~--~----~~~~~~i~T~~g~~~~~~~~-~~~-v~V~m-G~p~~~~~-~ip~~~~~~~~~~~~~ 144 (296)
.|||-|+=|++.+|.+. . +..++.++|.+|++.++..- +++ .+|.+ ..|+|..+ ++++..+ .... .
T Consensus 81 ~McGh~tI~~~t~lve~G~v~~~~~~t~v~ietPaGlV~a~~~~~~g~v~~Vsf~nVPSf~~~~d~~v~vp--g~G~--v 156 (325)
T pfam05544 81 PMCGHNTIGVVTVLLETGIVPPQEPETRLNLETPAGLVEARAECRDGKVERVSLRNVPSFVYALDVEVEVP--GLGR--V 156 (325)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEEEEEECCCCEEEEEEEEEECHHHHCCCEEECC--CCCC--E
T ss_conf 54253189999999987963468895379997894799999999699387999997431585479689789--9763--7
Q ss_pred ECCCCCCCEECCEEEEECCCCEEEEECC------CCCCHHHHHHHHHCCC---------CCCCCCCCCCEEEEEECCCC-
Q ss_conf 1057777402130999558742797425------5768688876310002---------33237555514679972887-
Q gi|254780710|r 145 HIGPVNHLFLRNPFVVSMGNPHAIFFVE------DDLYHYDLASFGNLLA---------KHPMFSEGVNLSIARVTSLE- 208 (296)
Q Consensus 145 ~~~~~~~~~~~~~~~v~iGNPH~Vi~v~------d~i~~~~l~~~g~~i~---------~~~~Fp~gvNV~fv~v~~~~- 208 (296)
..-...=||-=+++-.+ +.-+..+|..+|.+|+ .||.-|+.--+.++...++.
T Consensus 157 -----------~vDiayGG~~yaiVda~~lg~~l~~~~~~~L~~~g~~I~~a~~~~~~~~HP~~~~~~~i~~v~~~~~~~ 225 (325)
T pfam05544 157 -----------RVDIAYGGNFYAIVDAEQLGFDIEPAEARELVAAGEKIRDALNEQLKVVHPENPDIRGVSHVQLTGPPT 225 (325)
T ss_pred -----------EEEEEECCEEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCC
T ss_conf -----------999985766899985899299768311999999999999999852687588888767057999946888
Q ss_pred ----EEE-EEECCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCEEEECCCCE-EEEEEEC-----C-C--EEEEEECEE
Q ss_conf ----289-99804678766563235899999999817889--80799907957-9999958-----9-8--199994628
Q gi|254780710|r 209 ----SLD-LRTWERGVGLTAACGSAACASVVASGCLHKTN--RAVSVKMLGGG-LLIEWHD-----N-N--HVFMTGEAK 272 (296)
Q Consensus 209 ----~I~-iRt~ERGvGeTlACGTGA~Asa~~~~~~~~~~--~~v~V~~pGG~-L~v~~~~-----~-~--~i~l~Gpa~ 272 (296)
..+ +-+|--|.=----||||.+|-.+..+..|++. .+..-++.=|. -+.++.+ + . ....+|.|-
T Consensus 226 ~~~~~~rn~v~~~~g~iDRSPcGTGTsArlA~l~a~G~l~~ge~~~~eSIiGs~F~~~i~~~t~vg~~~aVip~I~G~A~ 305 (325)
T pfam05544 226 RAEGHARNAVIIGPGAIDRSPCGTGTSARMAQLHAKGKLKVGETFVHESIIGSEFEGRVEGETEVGGRPAIVPSISGRAW 305 (325)
T ss_pred CCCCCEEEEEEECCCCEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCCCEEEEEEEEEEE
T ss_conf 88875057999899836678862408999999997799779982999961287699999999898995779999999999
Q ss_pred EEEEEEEEECCCC
Q ss_conf 9998899841320
Q gi|254780710|r 273 KEWEGKLDIKTGK 285 (296)
Q Consensus 273 ~vf~G~~~i~~~~ 285 (296)
..-+.++-+...+
T Consensus 306 itG~~~~~~d~~D 318 (325)
T pfam05544 306 ITGTNQLLLDPSD 318 (325)
T ss_pred EEEEEEEEECCCC
T ss_conf 9998899977999
No 15
>PRK13970 hydroxyproline-2-epimerase; Provisional
Probab=98.54 E-value=3.4e-05 Score=54.13 Aligned_cols=263 Identities=15% Similarity=0.073 Sum_probs=140.0
Q ss_pred CCCEEEEECCCCCCEEEE-ECCCCCCCCCH-----------HHHH-HHCCC-CCCCC-CEEEEEECCCCCCCCEEEEEEE
Q ss_conf 541137851767738999-47788878888-----------8998-72035-67143-5589982588888668999971
Q gi|254780710|r 4 SMVDFAKMEGIGNKILVI-DMRGCHDNITS-----------DAIN-ALSTD-DNTHF-DQIMLIHDFQDASVDAFIRIIN 68 (296)
Q Consensus 4 ~mi~F~Kmhg~GNDFiii-D~~~~~~~~~~-----------~~i~-~~~~~-~giG~-Dgli~i~~~~~~~~d~~m~~fN 68 (296)
.+|+-.-||..|+=+=|| +.......-+- +.+| .|... +|-.. =|- +|.||.++.+|+-+-|++
T Consensus 2 r~i~~id~Ht~GEp~RiV~~G~p~l~G~T~~ekr~~~~~~~D~lR~~Lm~EPRGh~~M~Ga-ll~pp~~~~ad~Gvif~~ 80 (310)
T PRK13970 2 KRIQIIDSHTGGEPTRLVVSGFPSLGGGTMAERRDVLAREHDRYRTACILEPRGSDVLVGA-LLCEPVSPDAAAGVIFFN 80 (310)
T ss_pred CEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE-EECCCCCCCCCEEEEEEE
T ss_conf 4799996147988758997088899999999999999976579999976288988751889-973899988778999981
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCC--CCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCH-HHCCCCCCCCCCCCCEEE
Q ss_conf 78762123320332231110013--576403798358837999857742774036877777-768565656543443011
Q gi|254780710|r 69 CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW-KLIPLARSFDKMDRDRFH 145 (296)
Q Consensus 69 ~DGS~A~mCGNG~Rc~a~yl~~~--~~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~~~-~~ip~~~~~~~~~~~~~~ 145 (296)
++|-. .|||-|+=|++.+|.+. .......++|.+|.+.++..++.+|++. ..|+|.. .++++..+ .... ..
T Consensus 81 ~~gy~-~McGh~tI~~~t~l~e~G~v~p~~~~ietPaG~V~a~~~~~~~V~~~-nVpsf~~~~d~~v~vp--g~G~--v~ 154 (310)
T PRK13970 81 NSGYL-GMCGHGTIGVVRTLHHMGRIGPGVHRIETPVGTVEATLHDDLSVSVR-NVLAYRHAKDVVVDVP--GYGP--VK 154 (310)
T ss_pred CCCCC-CCCCCCEEEEEEHHHHCCCCCCCCEEEECCCCEEEEEEECCCEEEEE-EEEHHHHHCCCEEECC--CCCE--EE
T ss_conf 78777-75476344536065874876676178963783699999259989999-5600573279889868--9862--89
Q ss_pred CCCCCCCEECCEEEEECCCCEEEE-----ECCCCCCHHHHHHHHHCCCCC-----CCCCCCCCEEEEEECCCC-EE---E
Q ss_conf 057777402130999558742797-----425576868887631000233-----237555514679972887-28---9
Q gi|254780710|r 146 IGPVNHLFLRNPFVVSMGNPHAIF-----FVEDDLYHYDLASFGNLLAKH-----PMFSEGVNLSIARVTSLE-SL---D 211 (296)
Q Consensus 146 ~~~~~~~~~~~~~~v~iGNPH~Vi-----~v~d~i~~~~l~~~g~~i~~~-----~~Fp~gvNV~fv~v~~~~-~I---~ 211 (296)
. -...=||-.+++ .+. .-+.-.|..++..++.. ..-|++..++.++....+ .. .
T Consensus 155 v-----------DiayGG~fya~V~~~g~~~~-~~~~~~l~~~~~~ir~a~~~~~~~~~~~~~i~~v~~~~~~~~~~~rn 222 (310)
T PRK13970 155 G-----------DIAWGGNWFFLISDHGQRVA-GDNVAALTAYASAVRAGLERAGITGANGGEIDHIELFADDPEHDSRS 222 (310)
T ss_pred E-----------EEEECCEEEEEECHHCCCCC-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEE
T ss_conf 9-----------99706538999811067568-44699999999999999874598689888742389956898767128
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCEEEECCCCE-EEEEEEC-CCE--EEEEECEEEEEEEEEEECCCC
Q ss_conf 99804678766563235899999999817889--80799907957-9999958-981--999946289998899841320
Q gi|254780710|r 212 LRTWERGVGLTAACGSAACASVVASGCLHKTN--RAVSVKMLGGG-LLIEWHD-NNH--VFMTGEAKKEWEGKLDIKTGK 285 (296)
Q Consensus 212 iRt~ERGvGeTlACGTGA~Asa~~~~~~~~~~--~~v~V~~pGG~-L~v~~~~-~~~--i~l~Gpa~~vf~G~~~i~~~~ 285 (296)
+-+|--|.=----||||.+|-.+..+..|++. .+..-+..=|. ...+... .+. ...+|.|-..-+.++-|...+
T Consensus 223 ~vv~~~~~vDRSPcGTGTSARlA~l~a~G~l~~ge~~~~eSiiGs~F~~~~~~~~~aViP~I~G~A~itG~~~~~~dp~D 302 (310)
T PRK13970 223 FVLCPGHAYDRSPCGTGTSAKLACLAADGKLAPGVVWRQASVIGSVFSASYAAAEGGIVPTIRGSAHLSAEATLLIEDDD 302 (310)
T ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEECCCCEEEEEEEEEEEEEEEEEEEECCCC
T ss_conf 99969981045887632899999999749978998089996356649999985676299999889999998889956999
No 16
>COG3938 Proline racemase [Amino acid transport and metabolism]
Probab=98.21 E-value=5.1e-05 Score=52.99 Aligned_cols=221 Identities=17% Similarity=0.156 Sum_probs=125.1
Q ss_pred CEEEEECCCCCCEEEEECCCCCC-CCC-HHHHHHHCC------------CCCCCCCEEEEEECCCCCCCCEEEEEEECCC
Q ss_conf 11378517677389994778887-888-889987203------------5671435589982588888668999971787
Q gi|254780710|r 6 VDFAKMEGIGNKILVIDMRGCHD-NIT-SDAINALST------------DDNTHFDQIMLIHDFQDASVDAFIRIINCDG 71 (296)
Q Consensus 6 i~F~Kmhg~GNDFiiiD~~~~~~-~~~-~~~i~~~~~------------~~giG~Dgli~i~~~~~~~~d~~m~~fN~DG 71 (296)
+.-.--|..||-==+|-.-.... ..+ -++.+.+.+ -+|--+--.=+|.||+.+.+|+-+.|++++|
T Consensus 7 i~~id~HteGe~grvV~GG~p~~pg~tm~Eq~~~~~~d~d~lR~~l~~EPRG~~~~~~~lL~Pp~~pda~aa~ii~eps~ 86 (341)
T COG3938 7 IHCIDCHTEGEPGRVVVGGVPPLPGATMWEQRRWFARDHDWLRNFLMFEPRGHDFRSGNLLVPPKRPDADAAVIIMEPSG 86 (341)
T ss_pred EEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHEECCCCCCCEEEEEECCCCCCCCCEEEEEECCCC
T ss_conf 99970246886344897687898987689998887406488877632377887511566863899987657999974689
Q ss_pred CCCCCCCCHHHHHHHHHHCC--C----CCCEEEEEECCCCEEEEEC-CCCE---EEECCCCCCCCHHHCCCCCCCCCCCC
Q ss_conf 62123320332231110013--5----7640379835883799985-7742---77403687777776856565654344
Q gi|254780710|r 72 SEVQSCGNGMRCVVRFLTSR--M----KRKSFTFETIRGILVAKEN-RDGS---ISVDMGEPILDWKLIPLARSFDKMDR 141 (296)
Q Consensus 72 S~A~mCGNG~Rc~a~yl~~~--~----~~~~~~i~T~~g~~~~~~~-~~~~---v~V~mG~p~~~~~~ip~~~~~~~~~~ 141 (296)
.-. |||.|+=|++--|.+. . +...+.++|.+|.+.++.. .+++ |++.+ .|+|..+.- ++.+.+.+.
T Consensus 87 ~~p-MsGsntIc~~T~lle~G~v~m~eP~t~l~letP~GlV~~~a~crdGk~E~V~l~N-vPsf~~~ld-~~vevpglG- 162 (341)
T COG3938 87 CLP-MSGSNTICVVTVLLESGLVPMQEPETVLRLETPAGLVEATAECRDGKVERVRLRN-VPSFLHRLD-ASVEVPGLG- 162 (341)
T ss_pred CCC-CCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEEEEC-CHHHHHHCC-CEEECCCCC-
T ss_conf 987-6788826465678875876577885379985688579999971488288999973-566686638-757657762-
Q ss_pred CEEECCCCCCCEECCEEEEECCCCEEEEECC------CCCCHHHHHHHHHCCCC---------CCCCCCCCCEEEEEECC
Q ss_conf 3011057777402130999558742797425------57686888763100023---------32375555146799728
Q gi|254780710|r 142 DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE------DDLYHYDLASFGNLLAK---------HPMFSEGVNLSIARVTS 206 (296)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~v~iGNPH~Vi~v~------d~i~~~~l~~~g~~i~~---------~~~Fp~gvNV~fv~v~~ 206 (296)
.+... ...-||--+++-.+ ++-++-+|..++..|++ ||-+|+---|+|++..+
T Consensus 163 -~l~vD-----------iAYGG~~yaiVd~~~~g~~l~~~~A~~L~~~g~~i~~a~n~~~~f~HPe~p~i~~~s~~~~~~ 230 (341)
T COG3938 163 -RLTVD-----------IAYGGNFYAIVDAQANGFDLAPDEAGELVALGVKIRQALNEQLDFVHPENPDIRGVSHCQFAG 230 (341)
T ss_pred -EEEEE-----------EEECCEEEEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEC
T ss_conf -58899-----------740755799981688176658632688988679999987521475488887657445899807
Q ss_pred C-----CEEEEEECCCCC-CCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 8-----728999804678-76656323589999999981788
Q gi|254780710|r 207 L-----ESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 (296)
Q Consensus 207 ~-----~~I~iRt~ERGv-GeTlACGTGA~Asa~~~~~~~~~ 242 (296)
+ ..++--|+=+.- =----||||..|--+.++..|+.
T Consensus 231 ~~~~~~~~~Rnav~~~p~~~DRSPcGTGtSArmA~L~AkGkl 272 (341)
T COG3938 231 PPVRPGADLRNAVFYGPKAIDRSPCGTGTSARMAVLHAKGKL 272 (341)
T ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 876767555413897887545588877506778998745775
No 17
>pfam02567 PhzC-PhzF Phenazine biosynthesis-like protein. PhzC/PhzF is involved in dimerization of two 2,3-dihydro-3-oxo-anthranilic acid molecules to create PCA by P. fluorescens. This family also contains a putative thymidilate synthase from Mycobacterium tuberculosis, though there is no significant sequence similarity to pfam00303 members. This family appears to be distantly related to pfam01678, including containing a weak internal duplication. However members of this family do not contain the conserved cysteines that are hypothesized to be active site residues (Bateman A pers obs).
Probab=96.28 E-value=0.1 Score=31.16 Aligned_cols=93 Identities=17% Similarity=0.232 Sum_probs=71.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEC--CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 58742797425576868887631000233237555514679972--8872899980467876656323589999999981
Q gi|254780710|r 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT--SLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 (296)
Q Consensus 162 iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~--~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~ 239 (296)
-|||=+|++..+.+.......+++.+...+ .-|+... +....++|.|=- .+|=.=||-+..|++.+....
T Consensus 10 ~GNPaaVv~~~~~Ls~~~mQ~IA~e~n~SE-------TaFv~~~~~~~~~~~lR~FTP-~~Ev~fcGHaTlaaa~~L~~~ 81 (280)
T pfam02567 10 KGNPAAVVLDADELTDEEMQAIAAEFNLSE-------TAFVLPPSDEDADFRLRIFTP-VAEVPFCGHATLATAHALFEE 81 (280)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCE-------EEEEECCCCCCCCEEEEEECC-CCCCCCCCCHHHHHHHHHHHH
T ss_conf 863179998898999999999999879965-------899705888877369999678-541355666058999999983
Q ss_pred CCCC-CCEEEECCCCEEEEEEECC
Q ss_conf 7889-8079990795799999589
Q gi|254780710|r 240 HKTN-RAVSVKMLGGGLLIEWHDN 262 (296)
Q Consensus 240 ~~~~-~~v~V~~pGG~L~v~~~~~ 262 (296)
+... ..++.+++.|.|.|++..+
T Consensus 82 ~~~~~~~~~~~t~~G~l~v~~~~~ 105 (280)
T pfam02567 82 GGNGNKTLELETLAGIVPVKLVEG 105 (280)
T ss_pred CCCCCCEEEEECCEEEEEEEEECC
T ss_conf 799998799993728899999815
No 18
>pfam04303 PrpF PrpF protein. PrpF is a protein found in the 2-methylcitrate pathway. It is structurally similar to DAP epimerase and proline racemase. This protein is likely to acts to isomerize trans-aconitate to cis-aconitate.
Probab=95.86 E-value=0.16 Score=29.85 Aligned_cols=228 Identities=15% Similarity=0.122 Sum_probs=116.0
Q ss_pred CCCCC-----CEEEEEECCCCCCCCEEEEEE-----ECCCCCCCCCCCHHHHHHHHHHCC--C----CCCEEEE-EECCC
Q ss_conf 67143-----558998258888866899997-----178762123320332231110013--5----7640379-83588
Q gi|254780710|r 42 DNTHF-----DQIMLIHDFQDASVDAFIRII-----NCDGSEVQSCGNGMRCVVRFLTSR--M----KRKSFTF-ETIRG 104 (296)
Q Consensus 42 ~giG~-----Dgli~i~~~~~~~~d~~m~~f-----N~DGS~A~mCGNG~Rc~a~yl~~~--~----~~~~~~i-~T~~g 104 (296)
.|+|. --+-+|.++..+.+|..+.|- .+-=.-+.+|||=+-.++-|+.++ . .....+| .|..+
T Consensus 48 DGlGG~~s~tSKvaIv~~s~~~~~DVdY~F~QV~v~~~~VD~~~NCGN~~saVgpfAie~GlV~~~~~~t~VrI~n~NT~ 127 (371)
T pfam04303 48 DGIGGGNSSTSKVAIISKSSTPDHDVDYLFGQVSIDEQFVDWSGNCGNLSAAVGPFAIEAGLVPARIPVTAVRIWNVNTG 127 (371)
T ss_pred CCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCC
T ss_conf 77778777664399994688899741688999864685343678864455401457876396426899789999984789
Q ss_pred C-EEEE-ECCCCEEEEC----C-CCCCCC---------------HHHCCCCCCCCCCCCCEEECCCCCCCEECCEEEEEC
Q ss_conf 3-7999-8577427740----3-687777---------------776856565654344301105777740213099955
Q gi|254780710|r 105 I-LVAK-ENRDGSISVD----M-GEPILD---------------WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 (296)
Q Consensus 105 ~-~~~~-~~~~~~v~V~----m-G~p~~~---------------~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 162 (296)
. +.+. ...++.+..+ + |.|-.. -+..|--...+. +... . .....++|+.
T Consensus 128 ~~i~~~v~~~~G~~~~~Gd~~I~GVpGt~a~I~l~F~~p~Gs~TG~LlPTGn~~D~-----i~~~---g-g~i~vT~IDa 198 (371)
T pfam04303 128 KTIEAHVPTPNGQVQYDGDFEIDGVPGPGAPIALTFLDAAGDGTGALFPTGNLIDT-----LDVP---G-GTVEVTCIDA 198 (371)
T ss_pred CEEEEEEECCCCCCCCCCCEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEE-----EECC---C-CEEEEEEEEC
T ss_conf 87999996689941335873427756788851521578556668887999980379-----9728---9-6299999956
Q ss_pred CCCEEEEECCC----------CCCH-HHHHHHHHCCCC-----------------CCCCCCCCCEEEEEEC---------
Q ss_conf 87427974255----------7686-888763100023-----------------3237555514679972---------
Q gi|254780710|r 163 GNPHAIFFVED----------DLYH-YDLASFGNLLAK-----------------HPMFSEGVNLSIARVT--------- 205 (296)
Q Consensus 163 GNPH~Vi~v~d----------~i~~-~~l~~~g~~i~~-----------------~~~Fp~gvNV~fv~v~--------- 205 (296)
|||-+.+-.+| ++++ ..|...=..||. .+..| -+.|+.--
T Consensus 199 a~P~Vfv~A~dlGltG~E~p~el~a~~~ll~rlE~IR~~aa~~MGl~~d~~~a~~~~~iP---Ki~lVs~P~~y~~~~G~ 275 (371)
T pfam04303 199 AIPMVFVEAESLGYTGTELAEEINADPQLLARFETLRAAAALRMGLIGDVEDMVLRQHTP---KPAFVSPPEDYKASGGK 275 (371)
T ss_pred CCCEEEEEHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCC---EEEEEECCCCCCCCCCC
T ss_conf 883899888994998201277662499999999999999999716789967850568998---69999588546567883
Q ss_pred ----CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC---------CCCCCEEEECCCCEEEEEEE--C-CCE---EE
Q ss_conf ----88728999804678766563235899999999817---------88980799907957999995--8-981---99
Q gi|254780710|r 206 ----SLESLDLRTWERGVGLTAACGSAACASVVASGCLH---------KTNRAVSVKMLGGGLLIEWH--D-NNH---VF 266 (296)
Q Consensus 206 ----~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~---------~~~~~v~V~~pGG~L~v~~~--~-~~~---i~ 266 (296)
++-.|..|.|=-|.=..-==.|||+|.++++..-| .....++|..|.|.+.|... + ++. .-
T Consensus 276 ~~~~~~~Di~~R~fs~~~~H~a~~vTgavcla~Aa~i~GTV~~~~~~~~~~~~v~I~HPsG~i~v~~~~~~~~~~v~~a~ 355 (371)
T pfam04303 276 WVSAVEIDLLVRAFSMGKLHHALAGTGAVAIATAAAVPGTLVNLAAGGGERTVVRFGHPSGTLDVGAEATQQDGTVLRAI 355 (371)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEEECCCEEEEEEEEEECCCCCEEEEE
T ss_conf 52255567899980341002133367899999998279957898606799855999679817999999756899589999
Q ss_pred EEECEEEEEEEEEEE
Q ss_conf 994628999889984
Q gi|254780710|r 267 MTGEAKKEWEGKLDI 281 (296)
Q Consensus 267 l~Gpa~~vf~G~~~i 281 (296)
+.-.|..+|+|++.+
T Consensus 356 v~RTAR~Lm~G~V~v 370 (371)
T pfam04303 356 ISRTARRLMEGWVRV 370 (371)
T ss_pred EEECCHHHCCEEEEC
T ss_conf 996013425377969
No 19
>COG0384 Predicted epimerase, PhzC/PhzF homolog [General function prediction only]
Probab=93.36 E-value=0.68 Score=25.79 Aligned_cols=95 Identities=14% Similarity=0.134 Sum_probs=68.1
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC-EEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9558742797425576868887631000233237555514679972887-289998046787665632358999999998
Q gi|254780710|r 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE-SLDLRTWERGVGLTAACGSAACASVVASGC 238 (296)
Q Consensus 160 v~iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~-~I~iRt~ERGvGeTlACGTGA~Asa~~~~~ 238 (296)
-..|||=.|+.-.+.+....+..+++.+..++ .-|+...++. ..++|.|-=....-+ ||-.+.||+.+...
T Consensus 16 ~~~GNp~aVv~~a~~Lsd~~MQ~IA~e~n~SE-------T~Fv~~~~~~~~~rlR~FTP~~Evpf-~GHaTlga~~~l~~ 87 (291)
T COG0384 16 PFGGNPLAVVLDADGLSDEQMQAIAREFNLSE-------TAFVLPPDDPADARLRIFTPTTEVPF-AGHATLGAAHVLAE 87 (291)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCE-------EEEECCCCCCCCEEEEEECCCCCCCC-CCCHHHHHHHHHHH
T ss_conf 98998229981899999999999999849961-------69972788867148999678751466-88777999999997
Q ss_pred HCC-CC-CCEEEECCCCEEEEEEECC
Q ss_conf 178-89-8079990795799999589
Q gi|254780710|r 239 LHK-TN-RAVSVKMLGGGLLIEWHDN 262 (296)
Q Consensus 239 ~~~-~~-~~v~V~~pGG~L~v~~~~~ 262 (296)
++. .. ..+..+..-|.+.+.....
T Consensus 88 ~~~~~~~~~~~~e~~aG~v~i~~~~~ 113 (291)
T COG0384 88 LGGLSNDTTLTLETKAGLVPVTVERG 113 (291)
T ss_pred HCCCCCCCEEEEEECCCEEEEEEEEC
T ss_conf 44888662499991467189999967
No 20
>PRK10281 hypothetical protein; Provisional
Probab=93.13 E-value=0.73 Score=25.57 Aligned_cols=91 Identities=15% Similarity=0.156 Sum_probs=52.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCC--CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 5874279742557686888763100023323755551467997288--72899980467876656323589999999981
Q gi|254780710|r 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL--ESLDLRTWERGVGLTAACGSAACASVVASGCL 239 (296)
Q Consensus 162 iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~--~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~ 239 (296)
-|||=+|++..+.+.......+++.+.-++ --|+...+. ...++|.|==. .|--=||-...|++++....
T Consensus 17 ~GNPaaVv~~~~~L~~~~mq~IA~E~NlSE-------TaFv~~~~~~~~~~~lR~FTP~-~Ev~fcGHaTlaa~~~l~~~ 88 (299)
T PRK10281 17 RGNSAGVVLPADGLSEAQMQLIARELGHSE-------TAFLLSSDDSSYDVRVRYFTPT-VEVPICGHATVAAHYVRATV 88 (299)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCE-------EEEEECCCCCCCCEEEEEECCC-CCCCCCCCHHHHHHHHHHHH
T ss_conf 962049997898989999999999879955-------9998057888771689997576-41454530679999999972
Q ss_pred CCC-CCCEEEECCCCEEEEEEE
Q ss_conf 788-980799907957999995
Q gi|254780710|r 240 HKT-NRAVSVKMLGGGLLIEWH 260 (296)
Q Consensus 240 ~~~-~~~v~V~~pGG~L~v~~~ 260 (296)
+.. +..+.-....|.|.|.+.
T Consensus 89 ~~~~~~~~~~~t~~G~l~v~v~ 110 (299)
T PRK10281 89 LGLGNCTVWQTTGAGKLPVDIE 110 (299)
T ss_pred CCCCCCEEEEECCCEEEEEEEE
T ss_conf 6889954999816707999999
No 21
>COG1903 CbiD Cobalamin biosynthesis protein CbiD [Coenzyme metabolism]
Probab=81.76 E-value=2.4 Score=22.22 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=20.6
Q ss_pred CCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHH-HHHHHCC
Q ss_conf 56714355899825888886689999717876212332033223-1110013
Q gi|254780710|r 41 DDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV-VRFLTSR 91 (296)
Q Consensus 41 ~~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~Rc~-a~yl~~~ 91 (296)
.+|.-.|.+-+..|... .....+++ .+.++|..||. -|+.-|+
T Consensus 32 ~~g~~~~~V~V~tP~G~-~lev~ve~-------~~~~~~~a~A~v~K~~GDd 75 (367)
T COG1903 32 LNGEKVDTVKVPTPAGI-RLEVPVEV-------VEKGGNFARAAVRKDAGDD 75 (367)
T ss_pred HCCCCCEEEEECCCCCC-EEEEEEEE-------EEECCCCEEEEEECCCCCC
T ss_conf 54982306984168873-68999898-------8722783589997278999
No 22
>PRK00075 cbiD cobalt-precorrin-6A synthase; Reviewed
Probab=69.56 E-value=8.1 Score=18.69 Aligned_cols=10 Identities=30% Similarity=0.836 Sum_probs=4.9
Q ss_pred EECCCCCCCC
Q ss_conf 7403687777
Q gi|254780710|r 117 SVDMGEPILD 126 (296)
Q Consensus 117 ~V~mG~p~~~ 126 (296)
.+..|.|..+
T Consensus 116 ~~~vGepAIN 125 (366)
T PRK00075 116 GLPVGEPAIN 125 (366)
T ss_pred CCCCCCCCCC
T ss_conf 7999974249
No 23
>pfam10941 DUF2620 Protein of unknown function DUF2620. This is a bacterial family of proteins with unknown function.
Probab=61.86 E-value=6.3 Score=19.41 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCEE
Q ss_conf 6563235899999999817889807999079579
Q gi|254780710|r 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGL 255 (296)
Q Consensus 222 TlACGTGA~Asa~~~~~~~~~~~~v~V~~pGG~L 255 (296)
--||-||+=++...+..+-.-++..+|.+||...
T Consensus 49 iGACnTGgGgALamAIallG~~~C~Tvs~pg~~~ 82 (117)
T pfam10941 49 IGACNTGAGGALAMAIAILGKDKCATIAMPGKPP 82 (117)
T ss_pred EEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 6644789619999999994846357855699999
No 24
>TIGR02065 ECX1 exosome complex exonuclease 1; InterPro: IPR011807 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function. An active PH domain uses inorganic phosphate as a nucleophile, adding it across the phosphodiester bond between the end two nucleotides in order to release ribonucleoside 5'-diphosphate (rNDP) from the 3' end of the RNA substrate. PH domains can be found in bacterial/organelle RNases and PNPases (polynucleotide phosphorylases) , as well as in archaeal and eukaryotic RNA exosomes , , the later acting as nano-compartments for the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA). Bacterial/organelle PNPases share a common barrel structure with RNA exosomes, consisting of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber . Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel , . This entry represents a family of archaeal proteins that are orthologous to the eukaryotic exosome protein Rrp41. It is somewhat more distantly related to the bacterial protein ribonuclease PH. An exosome-like complex has been demonstrated experimentally for the Archaea in Sulfolobus solfataricus, so members of this family are designated exosome complex exonuclease 1, after usage in SwissProt .; GO: 0016896 exoribonuclease activity producing 5'-phosphomonoesters, 0000178 exosome (RNase complex).
Probab=60.02 E-value=9.5 Score=18.25 Aligned_cols=33 Identities=24% Similarity=0.665 Sum_probs=22.2
Q ss_pred CEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 55899825888886689999717876212332033223111
Q gi|254780710|r 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87 (296)
Q Consensus 47 Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~Rc~a~y 87 (296)
.--|+++.-+-...|.|+++-.||| |+||++--
T Consensus 103 epai~~E~fPRt~IDVF~EvLQADa--------GTR~Aglt 135 (231)
T TIGR02065 103 EPAILLEQFPRTAIDVFVEVLQADA--------GTRCAGLT 135 (231)
T ss_pred CCEEEEECCCCCCCEEEEEEEECCC--------CHHHHHHH
T ss_conf 3101322388950105789985276--------50478899
No 25
>COG2828 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.20 E-value=19 Score=16.20 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHHC----------CCCCCEEEECCCCEEEEEEEC---CC---EEEEEECEEEEEEEEEEEC
Q ss_conf 3235899999999817----------889807999079579999958---98---1999946289998899841
Q gi|254780710|r 225 CGSAACASVVASGCLH----------KTNRAVSVKMLGGGLLIEWHD---NN---HVFMTGEAKKEWEGKLDIK 282 (296)
Q Consensus 225 CGTGA~Asa~~~~~~~----------~~~~~v~V~~pGG~L~v~~~~---~~---~i~l~Gpa~~vf~G~~~i~ 282 (296)
-||||.|.+-++..-| -..+.|++.-|.|.|.|.... ++ ...|.-.|...|||.+...
T Consensus 301 ~~TgAvaiatA~a~pGtv~~~la~~~g~~~~V~~~HPSG~l~v~~~~~~~~~tv~~a~~~RtAR~lmeG~V~~p 374 (378)
T COG2828 301 AGTGAVAIATAAAVPGTVLVNLAAGGGERKNVRFEHPSGTLDVGLEAEGQDGTVTRASMSRTARKLMEGWVRVP 374 (378)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEECCCCCEEEEEEECCCCCCEEEEEEEHHHHHHHCCEEECC
T ss_conf 65448876676626881787765268866138853798727775555268872788875313456525268547
No 26
>TIGR01722 MMSDH methylmalonate-semialdehyde dehydrogenase; InterPro: IPR010061 These proteins are involved in valine catabolism, methylmalonate-semialdehyde dehydrogenase catalyzes the irreversible NAD+- and CoA-dependent oxidative decarboxylation of methylmalonate semialdehyde to propionyl-CoA. Methylmalonate-semialdehyde dehydrogenase has been characterised in both prokaryotes , and eukaryotes , functioning as a mammalian tetramer and a bacterial homodimer. Although similar in monomeric molecular mass and enzymatic activity, the N-terminal sequence in Pseudomonas aeruginosa does not correspond with the N-terminal sequence predicted for rat liver. Sequence homology to a variety of prokaryotic and eukaryotic aldehyde dehydrogenases places MMSDH in the aldehyde dehydrogenase (NAD+) superfamily making MMSDH's CoA requirement unique among known ALDHs. Methylmalonate semialdehyde dehydrogenase is closely related to betaine aldehyde dehydrogenase, 2-hydroxymuconic semialdehyde dehydrogenase, and class 1 and 2 aldehyde dehydrogenase . In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2 . The preceding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus.; GO: 0004491 methylmalonate-semialdehyde dehydrogenase (acylating) activity, 0006573 valine metabolic process.
Probab=46.01 E-value=22 Score=15.89 Aligned_cols=73 Identities=15% Similarity=0.257 Sum_probs=38.8
Q ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHCC---CCCCCCCEEEEE-----------ECCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 17677389994778887888889987203---567143558998-----------2588888668999971787621233
Q gi|254780710|r 12 EGIGNKILVIDMRGCHDNITSDAINALST---DDNTHFDQIMLI-----------HDFQDASVDAFIRIINCDGSEVQSC 77 (296)
Q Consensus 12 hg~GNDFiiiD~~~~~~~~~~~~i~~~~~---~~giG~Dgli~i-----------~~~~~~~~d~~m~~fN~DGS~A~mC 77 (296)
=.|||-||+ ++.+-.|..--+++. +-|. -||+|-| .++++-.+ +-|- ||.
T Consensus 161 iaCGNtF~l-----KPSE~vP~a~v~lAeLf~eaGa-PdGvlnvvHG~k~aVd~ll~HPdvKA---vSFV---GS~---- 224 (478)
T TIGR01722 161 IACGNTFVL-----KPSEKVPSAAVKLAELFSEAGA-PDGVLNVVHGDKEAVDRLLEHPDVKA---VSFV---GSV---- 224 (478)
T ss_pred HHHCCCEEC-----CCCCCCHHHHHHHHHHHHHCCC-CCCEEEEEECCHHHHHHHHCCCCEEE---EEEC---CCH----
T ss_conf 984661023-----7767675789999999986579-98716866187478777616897147---8521---512----
Q ss_pred CCHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf 2033223111001357640379835883
Q gi|254780710|r 78 GNGMRCVVRFLTSRMKRKSFTFETIRGI 105 (296)
Q Consensus 78 GNG~Rc~a~yl~~~~~~~~~~i~T~~g~ 105 (296)
-+++|+++.-....=++|...|-
T Consensus 225 -----~~g~Yi~~tgsahgKRVQa~~GA 247 (478)
T TIGR01722 225 -----AVGRYIYETGSAHGKRVQALAGA 247 (478)
T ss_pred -----HHHHHHHHHCCCCCCEEEECCCC
T ss_conf -----46656632023478743203577
No 27
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=45.22 E-value=22 Score=15.81 Aligned_cols=101 Identities=16% Similarity=0.240 Sum_probs=58.7
Q ss_pred EECCCCCCHHHHH-HHHHCCCCC--CCCCCCCCEEEEEECCCCEEEE-------------EECCCCCC-CCC------CC
Q ss_conf 7425576868887-631000233--2375555146799728872899-------------98046787-665------63
Q gi|254780710|r 169 FFVEDDLYHYDLA-SFGNLLAKH--PMFSEGVNLSIARVTSLESLDL-------------RTWERGVG-LTA------AC 225 (296)
Q Consensus 169 i~v~d~i~~~~l~-~~g~~i~~~--~~Fp~gvNV~fv~v~~~~~I~i-------------Rt~ERGvG-eTl------AC 225 (296)
+...|.+...-.+ ++.|.|+.. -.|.-|.||+|-++.-+..+.+ |+|.+|-| .+| +.
T Consensus 80 ~L~PDe~q~~vy~~~I~p~Lk~G~aL~FaHGfNihf~~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~s 159 (338)
T COG0059 80 ILLPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFGLIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQDAS 159 (338)
T ss_pred EECCHHHHHHHHHHHHHHHHCCCCEEEECCCCCEECCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCEEEEEEEECCC
T ss_conf 81865467899998743452278667762655311330337766718998389996789999873699516999986688
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCEEEEEECEEEEEEE
Q ss_conf 2358999999998178898079990795799999589819999462899988
Q gi|254780710|r 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 (296)
Q Consensus 226 GTGA~Asa~~~~~~~~~~~~v~V~~pGG~L~v~~~~~~~i~l~Gpa~~vf~G 277 (296)
|.+--=|...+.-.|. .++|.+.+.+.+.-+-.|-|.-...+-|
T Consensus 160 G~a~~~Ala~AkgiGg--------~RaGvieTTFkeEtetDLfGEQ~vLcGg 203 (338)
T COG0059 160 GKALDIALAYAKGIGG--------TRAGVIETTFKEETETDLFGEQAVLCGG 203 (338)
T ss_pred CCHHHHHHHHHHHCCC--------CCCCEEEEEEHHHHHHCCCCCHHHHHHH
T ss_conf 5099999999976188--------7631476420876640111121112007
No 28
>PRK10310 galactitol-specific PTS system component IIB; Provisional
Probab=41.97 E-value=14 Score=17.14 Aligned_cols=16 Identities=38% Similarity=0.642 Sum_probs=10.2
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 6323589999999981
Q gi|254780710|r 224 ACGSAACASVVASGCL 239 (296)
Q Consensus 224 ACGTGA~Asa~~~~~~ 239 (296)
|||||.+-|.+++.+.
T Consensus 8 ACGsGIATSTvva~kv 23 (94)
T PRK10310 8 ACGGAVATSTMAAEEI 23 (94)
T ss_pred ECCCCHHHHHHHHHHH
T ss_conf 8588375999999999
No 29
>TIGR01066 rplM_bact ribosomal protein L13; InterPro: IPR005823 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein L13 is one of the proteins from the large ribosomal subunit . In Escherichia coli, L13 is known to be one of the early assembly proteins of the 50S ribosomal subunit. This entry represents ribosomal protein L13 from bacteria, mitochondria and chloroplasts.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome.
Probab=39.23 E-value=27 Score=15.21 Aligned_cols=30 Identities=23% Similarity=0.083 Sum_probs=9.8
Q ss_pred HHHHHHHHHCCCCCCEEEECCCCEEEEEEE
Q ss_conf 999999981788980799907957999995
Q gi|254780710|r 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWH 260 (296)
Q Consensus 231 Asa~~~~~~~~~~~~v~V~~pGG~L~v~~~ 260 (296)
||.+|..++|+--..-+=++..|+=-|.+|
T Consensus 30 A~~vA~~LRGKHKp~YTP~~D~GD~VIvIN 59 (145)
T TIGR01066 30 ASEVAKLLRGKHKPTYTPHVDCGDYVIVIN 59 (145)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 898999843788884347861487269970
No 30
>KOG1798 consensus
Probab=35.49 E-value=19 Score=16.27 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=4.8
Q ss_pred EEEEECCCCCCCC
Q ss_conf 9997178762123
Q gi|254780710|r 64 IRIINCDGSEVQS 76 (296)
Q Consensus 64 m~~fN~DGS~A~m 76 (296)
+-+||.|||.||+
T Consensus 930 YAVFN~DGsLAEL 942 (2173)
T KOG1798 930 YAVFNEDGSLAEL 942 (2173)
T ss_pred EEEECCCCCHHHH
T ss_conf 5786578855442
No 31
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=34.90 E-value=21 Score=15.92 Aligned_cols=35 Identities=14% Similarity=0.379 Sum_probs=22.5
Q ss_pred CCCCCCEEE--EEECCCCEEEEEECCCCCCC---CCCCHHHHH
Q ss_conf 755551467--99728872899980467876---656323589
Q gi|254780710|r 193 FSEGVNLSI--ARVTSLESLDLRTWERGVGL---TAACGSAAC 230 (296)
Q Consensus 193 Fp~gvNV~f--v~v~~~~~I~iRt~ERGvGe---TlACGTGA~ 230 (296)
.|.|..++| +.+.+.+++ +||-|... |-+||||++
T Consensus 58 lpag~~~eyK~v~~~~~g~v---~WE~g~Nr~~t~P~~gt~tv 97 (101)
T cd05807 58 VPAGTTIEFKFIKKNGDNTV---TWESGSNHTYTAPSSTTGTI 97 (101)
T ss_pred ECCCCCEEEEEEEECCCCCE---EEECCCCEEEECCCCCCEEE
T ss_conf 67999599999999689988---98579996697889966799
No 32
>pfam02459 Adeno_terminal Adenoviral DNA terminal protein. This protein is covalently attached to the terminii of replicating DNA in vivo.
Probab=34.33 E-value=30 Score=14.93 Aligned_cols=41 Identities=29% Similarity=0.365 Sum_probs=28.5
Q ss_pred HHHHHHCCCCCCCCCCCCCEEEEEECCC------CEEEEEEC-CCCCC
Q ss_conf 8763100023323755551467997288------72899980-46787
Q gi|254780710|r 180 LASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTW-ERGVG 220 (296)
Q Consensus 180 l~~~g~~i~~~~~Fp~gvNV~fv~v~~~------~~I~iRt~-ERGvG 220 (296)
|..+...++.+..|.--|+++++||+=+ ..+.-||| |+|..
T Consensus 400 L~YL~~~L~~~~~f~R~V~ln~~QVimrgRd~~G~~vysRVW~e~~~~ 447 (548)
T pfam02459 400 LNYLHAHLRLNRPFRRYVELNLAQVIMRGRDENGEVVYSRVWNENGNN 447 (548)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEECCCCCC
T ss_conf 999999997308888860310578999985488878788630568877
No 33
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=33.80 E-value=20 Score=16.11 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=6.6
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 632358999999998
Q gi|254780710|r 224 ACGSAACASVVASGC 238 (296)
Q Consensus 224 ACGTGA~Asa~~~~~ 238 (296)
|||||..-|.+++.+
T Consensus 6 aCGsGiaTSt~v~~k 20 (89)
T cd05566 6 ACGTGVATSTVVASK 20 (89)
T ss_pred ECCCCCHHHHHHHHH
T ss_conf 989970399999999
No 34
>KOG1250 consensus
Probab=32.52 E-value=35 Score=14.52 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHCCC----CCCEEEECCCCE
Q ss_conf 3589999999981788----980799907957
Q gi|254780710|r 227 SAACASVVASGCLHKT----NRAVSVKMLGGG 254 (296)
Q Consensus 227 TGA~Asa~~~~~~~~~----~~~v~V~~pGG~ 254 (296)
-+|||+++++...++. +..+.....||.
T Consensus 322 EpAgaaaLaai~~~~~~~lk~~~vv~ilsG~n 353 (457)
T KOG1250 322 EPAGAAALAAIYSGKLNHLKGKKVVSILSGGN 353 (457)
T ss_pred CCCHHHHHHHHHHCCCCCCCCCEEEEECCCCC
T ss_conf 36249889999705655667760776513688
No 35
>KOG1794 consensus
Probab=31.78 E-value=36 Score=14.44 Aligned_cols=46 Identities=35% Similarity=0.396 Sum_probs=26.9
Q ss_pred CCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCH
Q ss_conf 888899872035671435589982588888668999971787621233203
Q gi|254780710|r 30 ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNG 80 (296)
Q Consensus 30 ~~~~~i~~~~~~~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG 80 (296)
++.+++-.+...+--+-.|+++|- +.+..-+.+|+|||++.--|=|
T Consensus 104 v~sDa~~sl~a~t~g~~~GiVLia-----GTgs~crl~~~DGs~~~~ggwg 149 (336)
T KOG1794 104 VTSDADGSLAAATPGGEGGIVLIA-----GTGSNCRLVNPDGSEKGAGGWG 149 (336)
T ss_pred EEHHHHHHHHHCCCCCCCCEEEEE-----CCCCEEEEECCCCCCCCCCCCC
T ss_conf 611577787524877778679995-----3785048888988826799887
No 36
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family; InterPro: IPR011929 Members of this family show sequence similarity to members of the NlpC/P60 family, described by Anantharaman and Aravind . The NlpC/P60 family includes a number of characterised bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes..
Probab=31.68 E-value=23 Score=15.72 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=19.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCC-EEEECCCCEEEEEEECC
Q ss_conf 467876656323589999999981788980-79990795799999589
Q gi|254780710|r 216 ERGVGLTAACGSAACASVVASGCLHKTNRA-VSVKMLGGGLLIEWHDN 262 (296)
Q Consensus 216 ERGvGeTlACGTGA~Asa~~~~~~~~~~~~-v~V~~pGG~L~v~~~~~ 262 (296)
|+|.||||. .+..++++.-+ ..--+||=.|..+|+++
T Consensus 54 E~G~~e~L~----------~Aa~R~lv~~pG~~~~qpGDlLlFRw~~G 91 (135)
T TIGR02219 54 EVGGGELLL----------EAALRHLVAVPGLEAAQPGDLLLFRWRPG 91 (135)
T ss_pred CCCCCHHHH----------HHHHHHHCCCCCCCCCCCCCEEEECCCCC
T ss_conf 148883688----------88865512578888788876677715524
No 37
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=30.49 E-value=16 Score=16.67 Aligned_cols=13 Identities=23% Similarity=0.828 Sum_probs=7.0
Q ss_pred CCEEEEECCCCCCH
Q ss_conf 74279742557686
Q gi|254780710|r 164 NPHAIFFVEDDLYH 177 (296)
Q Consensus 164 NPH~Vi~v~d~i~~ 177 (296)
|||||+.. |.|++
T Consensus 595 ~P~cVLLL-DEIEK 607 (774)
T TIGR02639 595 HPHCVLLL-DEIEK 607 (774)
T ss_pred CCCEEEHH-HHHHH
T ss_conf 88535423-46666
No 38
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=30.23 E-value=21 Score=15.90 Aligned_cols=21 Identities=24% Similarity=0.484 Sum_probs=12.8
Q ss_pred CEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 72899980467876656323589999
Q gi|254780710|r 208 ESLDLRTWERGVGLTAACGSAACASV 233 (296)
Q Consensus 208 ~~I~iRt~ERGvGeTlACGTGA~Asa 233 (296)
.+|.+-.=|| ++||.|+|.+=
T Consensus 217 e~I~vSle~~-----M~CG~G~C~~C 237 (253)
T cd06221 217 EQIWVSLERR-----MKCGVGKCGHC 237 (253)
T ss_pred HEEEEECCCC-----CCCCCEECCCC
T ss_conf 0079931553-----66836054872
No 39
>cd01775 CYR1_RA CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=29.42 E-value=36 Score=14.45 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=14.0
Q ss_pred CEEEEEEECCCCCCCCC
Q ss_conf 68999971787621233
Q gi|254780710|r 61 DAFIRIINCDGSEVQSC 77 (296)
Q Consensus 61 d~~m~~fN~DGS~A~mC 77 (296)
.|++++|++|||-+...
T Consensus 2 ~y~IRIfr~D~Tf~tls 18 (97)
T cd01775 2 SYCIRVFRSDGTFTTLS 18 (97)
T ss_pred CEEEEEEECCCCEEEEE
T ss_conf 74899994499489997
No 40
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme; InterPro: IPR006316 These sequences represent a family of pyridoxal-phosphate dependent enzymes that are closely related to the beta subunit of tryptophan synthase. ; GO: 0004834 tryptophan synthase activity, 0030170 pyridoxal phosphate binding, 0000162 tryptophan biosynthetic process.
Probab=29.24 E-value=11 Score=17.79 Aligned_cols=14 Identities=29% Similarity=0.116 Sum_probs=6.2
Q ss_pred CCCCEEEEEECCCC
Q ss_conf 57640379835883
Q gi|254780710|r 92 MKRKSFTFETIRGI 105 (296)
Q Consensus 92 ~~~~~~~i~T~~g~ 105 (296)
-+.++++-||.+|.
T Consensus 118 ~G~k~l~TETGAGQ 131 (426)
T TIGR01415 118 EGAKRLVTETGAGQ 131 (426)
T ss_pred CCCEEEECCCCCCH
T ss_conf 48437432368864
No 41
>PRK10815 sensor protein PhoQ; Provisional
Probab=28.91 E-value=40 Score=14.13 Aligned_cols=76 Identities=22% Similarity=0.226 Sum_probs=40.0
Q ss_pred HHHHHCCCCCCCC-CCCCCEEEEEECCCCEEEEE---------------ECCCCC-CCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 7631000233237-55551467997288728999---------------804678-766563235899999999817889
Q gi|254780710|r 181 ASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLR---------------TWERGV-GLTAACGSAACASVVASGCLHKTN 243 (296)
Q Consensus 181 ~~~g~~i~~~~~F-p~gvNV~fv~v~~~~~I~iR---------------t~ERGv-GeTlACGTGA~Asa~~~~~~~~~~ 243 (296)
..++.+++|.--+ |+++.|..-+ +.+.+.+. +|||+. +.|..-|||- .-+++.......+
T Consensus 380 ~~l~NLldNAikys~~~v~I~~~~--~~~~~~I~V~D~GpGIp~e~~~~IFeRF~R~d~~r~GsGL-GLaIvk~Iv~~hg 456 (484)
T PRK10815 380 EVMGNVLDNACKYCLEFVEISARQ--TDEHLHIVVEDDGPGIPESKRELIFDRGQRVDTLRPGQGV-GLAVAREITEQYE 456 (484)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEE--ECCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCH-HHHHHHHHHHHCC
T ss_conf 999999999997288867999999--6999999999739999989998624688779999998576-7999999999889
Q ss_pred CCEEE-ECCCCEEEEEE
Q ss_conf 80799-90795799999
Q gi|254780710|r 244 RAVSV-KMLGGGLLIEW 259 (296)
Q Consensus 244 ~~v~V-~~pGG~L~v~~ 259 (296)
-.+++ ..|+|.+.+++
T Consensus 457 G~I~l~~s~~gG~~f~I 473 (484)
T PRK10815 457 GKIVASESPLGGARMEV 473 (484)
T ss_pred CEEEEEECCCCCEEEEE
T ss_conf 98999956999248999
No 42
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase; InterPro: IPR006269 These sequences describe 2-dehydro-3-deoxyphosphooctonate aldolase. Alternate names include 3-deoxy-d-manno-octulosonic acid 8-phosphate and KDO-8 phosphate synthetase. It catalyzes the aldol condensation of phosphoenolpyruvate with D-arabinose 5-phosphate. phosphoenolpyruvate + D-arabinose 5-phosphate + H_2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide. ; GO: 0008676 3-deoxy-8-phosphooctulonate synthase activity, 0008152 metabolic process, 0005737 cytoplasm.
Probab=28.83 E-value=40 Score=14.12 Aligned_cols=11 Identities=36% Similarity=0.522 Sum_probs=6.8
Q ss_pred EECCCCC--CCCC
Q ss_conf 9804678--7665
Q gi|254780710|r 213 RTWERGV--GLTA 223 (296)
Q Consensus 213 Rt~ERGv--GeTl 223 (296)
-.=|||+ ||+.
T Consensus 162 ~lcERG~~FGYnn 174 (279)
T TIGR01362 162 LLCERGTSFGYNN 174 (279)
T ss_pred EEEECCCCCCCCC
T ss_conf 5861788888875
No 43
>TIGR02918 TIGR02918 conserved hypothetical protein TIGR02918; InterPro: IPR014267 Members of this entry are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus..
Probab=28.33 E-value=33 Score=14.68 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=12.0
Q ss_pred CCCCCCCEEE-EEEECCCCCC
Q ss_conf 8888866899-9971787621
Q gi|254780710|r 55 FQDASVDAFI-RIINCDGSEV 74 (296)
Q Consensus 55 ~~~~~~d~~m-~~fN~DGS~A 74 (296)
|.++.+...| +|||-|||.|
T Consensus 156 P~Dn~A~LY~R~FYNEDGSIA 176 (511)
T TIGR02918 156 PADNKAKLYQRTFYNEDGSIA 176 (511)
T ss_pred CCCCCCEEEECEEECCCCCHH
T ss_conf 767985471011242588343
No 44
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=27.92 E-value=32 Score=14.73 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=9.0
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 56323589999999
Q gi|254780710|r 223 AACGSAACASVVAS 236 (296)
Q Consensus 223 lACGTGA~Asa~~~ 236 (296)
..||||-.|-|++.
T Consensus 203 ~GCGSGIL~IAa~~ 216 (330)
T TIGR00406 203 VGCGSGILSIAALK 216 (330)
T ss_pred ECCCHHHHHHHHHH
T ss_conf 12671789999997
No 45
>cd05535 POLBc_epsilon DNA polymerase type-B epsilon subfamily catalytic domain. Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase (Pol) epsilon has been proposed to play a role in elongation of the leading strand during DNA replication. Pol epsilon might also have a role in DNA repair. The structure of pol epsilon is characteristic of this family with the exception that it contains a large c-terminal domain with an unclear function. Phylogenetic analyses indicate that Pol epsilon is the ortholog to the archaeal Pol B3 rather than to Pol alpha, delta, or zeta. This might be because pol epsilon is ancestral to both archaea and eukaryotes DNA polymerases type B.
Probab=26.58 E-value=38 Score=14.26 Aligned_cols=11 Identities=27% Similarity=0.042 Sum_probs=5.9
Q ss_pred CCEEEEEECCC
Q ss_conf 35589982588
Q gi|254780710|r 46 FDQIMLIHDFQ 56 (296)
Q Consensus 46 ~Dgli~i~~~~ 56 (296)
-||+-.+.|..
T Consensus 331 TDGIWC~LP~s 341 (621)
T cd05535 331 TDGIWCILPKS 341 (621)
T ss_pred CCCEEEECCCC
T ss_conf 88746866667
No 46
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=26.45 E-value=34 Score=14.58 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=5.4
Q ss_pred CCCHHHHHHHHHHCC
Q ss_conf 320332231110013
Q gi|254780710|r 77 CGNGMRCVVRFLTSR 91 (296)
Q Consensus 77 CGNG~Rc~a~yl~~~ 91 (296)
||.| |++--+...
T Consensus 96 tGSG--~I~i~la~~ 108 (251)
T TIGR03534 96 TGSG--AIALALAKE 108 (251)
T ss_pred CCHH--HHHHHHHHH
T ss_conf 6716--999999996
No 47
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional
Probab=26.32 E-value=44 Score=13.83 Aligned_cols=59 Identities=27% Similarity=0.392 Sum_probs=32.2
Q ss_pred CCEEEECCCCCCCCHHHCCCCCCCCCCCCC--------------------------EEECCCCCCCEECCEEEEECCCCE
Q ss_conf 742774036877777768565656543443--------------------------011057777402130999558742
Q gi|254780710|r 113 DGSISVDMGEPILDWKLIPLARSFDKMDRD--------------------------RFHIGPVNHLFLRNPFVVSMGNPH 166 (296)
Q Consensus 113 ~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~v~iGNPH 166 (296)
+-.|++++-+|-.+++.|-.++...+..-. .+.+......+..++|+-. |-|
T Consensus 143 ~LeITINLSKPEKDPk~IAaak~~~~s~YPkC~LC~ENEGY~Gr~nhPAR~NhRiI~~~L~ge~W~fQYSPYaYy--nEH 220 (496)
T PRK05270 143 DLEITINLSKPEKDPKAIAAAKNAKASSYPKCLLCMENEGYAGRLNHPARSNHRIIRVTLGGESWGFQYSPYAYF--NEH 220 (496)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCEE--ECE
T ss_conf 569998656888999999998617778998433543046756778898655752676752897014674541054--123
Q ss_pred EEEECCC
Q ss_conf 7974255
Q gi|254780710|r 167 AIFFVED 173 (296)
Q Consensus 167 ~Vi~v~d 173 (296)
||+|-++
T Consensus 221 cIvl~~~ 227 (496)
T PRK05270 221 CIFLSEK 227 (496)
T ss_pred EEEECCC
T ss_conf 6886586
No 48
>KOG2904 consensus
Probab=26.00 E-value=33 Score=14.63 Aligned_cols=12 Identities=25% Similarity=0.055 Sum_probs=5.4
Q ss_pred ECCCCEEEEEEE
Q ss_conf 907957999995
Q gi|254780710|r 249 KMLGGGLLIEWH 260 (296)
Q Consensus 249 ~~pGG~L~v~~~ 260 (296)
-.|||.+..+..
T Consensus 275 Lq~gg~~~le~~ 286 (328)
T KOG2904 275 LQPGGFEQLELV 286 (328)
T ss_pred CCCCCEEEEEEC
T ss_conf 566885889733
No 49
>pfam02302 PTS_IIB PTS system, Lactose/Cellobiose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This family also contains the fructose specific IIB subunit.
Probab=25.82 E-value=40 Score=14.15 Aligned_cols=17 Identities=35% Similarity=0.704 Sum_probs=9.2
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 56323589999999981
Q gi|254780710|r 223 AACGSAACASVVASGCL 239 (296)
Q Consensus 223 lACGTGA~Asa~~~~~~ 239 (296)
.+||||...|..++.++
T Consensus 4 ~~C~~G~atS~m~a~~l 20 (91)
T pfam02302 4 TACGAGMATSLMAAEAL 20 (91)
T ss_pred EECCCHHHHHHHHHHHH
T ss_conf 88876376999999999
No 50
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase; InterPro: IPR005786 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C-terminus side of the PlP-lysine. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE) (2.6.1.42 from EC). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family. ; GO: 0004084 branched-chain-amino-acid transaminase activity, 0009081 branched chain family amino acid metabolic process.
Probab=25.64 E-value=19 Score=16.32 Aligned_cols=17 Identities=41% Similarity=0.556 Sum_probs=12.5
Q ss_pred ECCCCC-CCCCCCHHHHH
Q ss_conf 804678-76656323589
Q gi|254780710|r 214 TWERGV-GLTAACGSAAC 230 (296)
Q Consensus 214 t~ERGv-GeTlACGTGA~ 230 (296)
--|+|. -|-.||||.|.
T Consensus 261 ~~~~G~~tEvfacGTAAV 278 (329)
T TIGR01123 261 AVEAGAITEVFACGTAAV 278 (329)
T ss_pred HHHCCCCEEEECCCCCEE
T ss_conf 765451101001186148
No 51
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=25.40 E-value=13 Score=17.23 Aligned_cols=59 Identities=12% Similarity=-0.015 Sum_probs=27.4
Q ss_pred CCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCC--C----CCCCCHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf 3567143558998258888866899997178762--1----233203322311100135764037983588
Q gi|254780710|r 40 TDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSE--V----QSCGNGMRCVVRFLTSRMKRKSFTFETIRG 104 (296)
Q Consensus 40 ~~~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~--A----~mCGNG~Rc~a~yl~~~~~~~~~~i~T~~g 104 (296)
++...-.-|++.|.-+..... -+-|.++|-.+ - ..-|.|++-+ .+....+.+.+.-.-|
T Consensus 37 ~~f~~~PGQFv~v~v~g~ge~--PiSi~~~~~~~g~l~~~~r~vG~~T~~L----~~lk~Gd~l~v~GPlG 101 (292)
T PRK08345 37 ESFTFKPGQFVQVTIPGVGEV--PISICSSPTRKGFFELCIRRAGRVTTVV----HRLKEGDIVGVRGPYG 101 (292)
T ss_pred CCCCCCCCCEEEEEECCCCCC--CEEEECCCCCCCEEEEEEEEECHHHHHH----HCCCCCCEEEEEECCC
T ss_conf 458608998599996899961--0587156888998999998218699999----6289999999972357
No 52
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=25.12 E-value=37 Score=14.38 Aligned_cols=14 Identities=21% Similarity=0.358 Sum_probs=9.1
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 33203322311100
Q gi|254780710|r 76 SCGNGMRCVVRFLT 89 (296)
Q Consensus 76 mCGNG~Rc~a~yl~ 89 (296)
=||+|.-.++.+++
T Consensus 53 G~GTG~La~ga~~l 66 (198)
T COG2263 53 GAGTGILAIGAALL 66 (198)
T ss_pred CCCCCHHHHHHHHC
T ss_conf 78847889999862
No 53
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=24.21 E-value=13 Score=17.40 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=22.7
Q ss_pred CCCEEEEEEECCCEEEEEECEEEEEEEEEE
Q ss_conf 795799999589819999462899988998
Q gi|254780710|r 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 (296)
Q Consensus 251 pGG~L~v~~~~~~~i~l~Gpa~~vf~G~~~ 280 (296)
|....++++.++++|++.||.. ++|.++
T Consensus 409 p~p~~evKI~d~GEilVRG~~V--m~GYyk 436 (613)
T COG1022 409 PLPGIEVKIADDGEILVRGPNV--MKGYYK 436 (613)
T ss_pred CCCCCEEEECCCCEEEEECCHH--CCHHCC
T ss_conf 3788569983674489816412--102208
No 54
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR006268 These sequences are one of at least three types of phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase). This enzyme catalyzes the first of 7 steps in the biosynthesis of chorismate, that last common precursor of all three aromatic amino acids and of PABA, ubiquinone and menaquinone. Some members of this family, including an experimentally characterised member from Bacillus subtilis, are bifunctional, with a chorismate mutase domain N-terminal to this region. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.; GO: 0016832 aldehyde-lyase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=24.02 E-value=49 Score=13.55 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=7.8
Q ss_pred EEECCCCCCCCCCC
Q ss_conf 99804678766563
Q gi|254780710|r 212 LRTWERGVGLTAAC 225 (296)
Q Consensus 212 iRt~ERGvGeTlAC 225 (296)
+||||.=.=.||==
T Consensus 171 IRTfE~~TR~TLD~ 184 (262)
T TIGR01361 171 IRTFEKSTRNTLDL 184 (262)
T ss_pred CCCCCCHHHHHHHH
T ss_conf 56763002453337
No 55
>TIGR02912 sulfite_red_C sulfite reductase, subunit C; InterPro: IPR014261 This entry represents subunit C, one of the three subunits of the anaerobic sulphite reductase of Salmonella, and close homologues from various Clostridium species, where the three-gene neighbourhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substrates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulphite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulphide gas from sulphite..
Probab=23.97 E-value=25 Score=15.46 Aligned_cols=55 Identities=25% Similarity=0.445 Sum_probs=36.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEC-CCCEEEEEECCCCC-CCCC
Q ss_conf 58742797425576868887631000233237555514679972-88728999804678-7665
Q gi|254780710|r 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT-SLESLDLRTWERGV-GLTA 223 (296)
Q Consensus 162 iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~-~~~~I~iRt~ERGv-GeTl 223 (296)
+||.=|- ..+.+-..+++.||+ -.||.-.-|-.+-+= ..+.+++|--.=|. |-|.
T Consensus 113 ~GN~vC~------~an~~Tt~~a~riEK-~vfP~dyH~K~~l~GCPNDC~Ka~M~D~GI~G~t~ 169 (323)
T TIGR02912 113 IGNRVCP------FANYDTTKFAKRIEK-AVFPNDYHLKIALTGCPNDCAKARMHDFGIIGMTE 169 (323)
T ss_pred CCCCCCC------CCCCCHHHHHHHHHH-HCCCCCCEEEEEEECCCCHHHHCCHHHCCEECCCC
T ss_conf 3776276------656547789888654-21888751899987488712330020131432545
No 56
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=23.69 E-value=49 Score=13.51 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=33.2
Q ss_pred ECCCCCCHHHHHHHHHCCCCC--CCCCCCCCEEEEEECCCCEEEE-------------EECCCCCC-CCC
Q ss_conf 425576868887631000233--2375555146799728872899-------------98046787-665
Q gi|254780710|r 170 FVEDDLYHYDLASFGNLLAKH--PMFSEGVNLSIARVTSLESLDL-------------RTWERGVG-LTA 223 (296)
Q Consensus 170 ~v~d~i~~~~l~~~g~~i~~~--~~Fp~gvNV~fv~v~~~~~I~i-------------Rt~ERGvG-eTl 223 (296)
...|.....-...+.|.+... -.|.-|.|+.|-.+.-+.-|.+ |+|.||-| .||
T Consensus 105 LtPD~q~~~v~~~i~p~mk~g~~L~faHGfnI~~~~i~~r~di~V~MvAPK~PG~~VR~~y~~G~GvP~L 174 (489)
T PRK05225 105 LTPDKQHSDVVRAVQPLMKQGAALGYSHGFNIVEEGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTL 174 (489)
T ss_pred ECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCEE
T ss_conf 0885514899999987612677211145650553123168886389975899964899998627997449
No 57
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=23.29 E-value=48 Score=13.61 Aligned_cols=16 Identities=38% Similarity=0.592 Sum_probs=9.1
Q ss_pred CCCHHHHHHHHHHHHHHC
Q ss_conf 563235899999999817
Q gi|254780710|r 223 AACGSAACASVVASGCLH 240 (296)
Q Consensus 223 lACGTGA~Asa~~~~~~~ 240 (296)
+.||||-.| +++.++|
T Consensus 169 vGcGSGILa--IAa~kLG 184 (300)
T COG2264 169 VGCGSGILA--IAAAKLG 184 (300)
T ss_pred ECCCHHHHH--HHHHHCC
T ss_conf 267815999--9999819
No 58
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.27 E-value=50 Score=13.46 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=17.2
Q ss_pred CCHHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 88889987203567143558998258
Q gi|254780710|r 30 ITSDAINALSTDDNTHFDQIMLIHDF 55 (296)
Q Consensus 30 ~~~~~i~~~~~~~giG~Dgli~i~~~ 55 (296)
...+.++++|.+-++|.|-++|+.+.
T Consensus 311 ~K~eNirkIAkklNlg~dSmvFiDD~ 336 (574)
T COG3882 311 PKAENIRKIAKKLNLGLDSMVFIDDN 336 (574)
T ss_pred CCHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 41556999999828886404772488
No 59
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=22.38 E-value=49 Score=13.56 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=11.8
Q ss_pred CCCCHHHHHHHHHHHHHHCC
Q ss_conf 65632358999999998178
Q gi|254780710|r 222 TAACGSAACASVVASGCLHK 241 (296)
Q Consensus 222 TlACGTGA~Asa~~~~~~~~ 241 (296)
-..||||..|- ++.++|.
T Consensus 168 DvG~GSGILaI--aA~klGa 185 (298)
T PRK00517 168 DVGCGSGILAI--AAAKLGA 185 (298)
T ss_pred EECCCCHHHHH--HHHHCCC
T ss_conf 71577069999--9997499
No 60
>COG0043 UbiD 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases [Coenzyme metabolism]
Probab=22.30 E-value=53 Score=13.34 Aligned_cols=95 Identities=22% Similarity=0.188 Sum_probs=47.7
Q ss_pred CCEEEE--EECCCCEEEEEECC-CCC----------CC----CCCCHHHHHHHHHHHHHH--CCCCCCEEEECCCCEEEE
Q ss_conf 514679--97288728999804-678----------76----656323589999999981--788980799907957999
Q gi|254780710|r 197 VNLSIA--RVTSLESLDLRTWE-RGV----------GL----TAACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLI 257 (296)
Q Consensus 197 vNV~fv--~v~~~~~I~iRt~E-RGv----------Ge----TlACGTGA~Asa~~~~~~--~~~~~~v~V~~pGG~L~v 257 (296)
.|++++ |+++++++-+|.-- ||- |+ +.+=|.=-.....++.-+ +.-+-...=...|+.+.+
T Consensus 162 ~NlgiyR~qv~~~~~l~~~~~~hr~~~~~~~~a~~~g~~lpvAv~iG~dP~~~laA~~plP~gvsE~~fAg~l~g~~~~v 241 (477)
T COG0043 162 RNLGIYRMQVLGKNKLAMRWVPHRHGALHLRKAEERGEPLPVAVAIGADPATILAAATPLPYGVSELEFAGALRGEPLEV 241 (477)
T ss_pred CCCEEEEEEEECCCEEEEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEE
T ss_conf 66517889995487589997745647999999998378874699967998998721377998956999888862795458
Q ss_pred EEECCCEEEEEECEEEEEEEEEEECCCCCC-CCCCCC
Q ss_conf 995898199994628999889984132000-148874
Q gi|254780710|r 258 EWHDNNHVFMTGEAKKEWEGKLDIKTGKWI-KKNEDD 293 (296)
Q Consensus 258 ~~~~~~~i~l~Gpa~~vf~G~~~i~~~~~~-~~~~~~ 293 (296)
.--..+.+..--.|++|.||.+... +.. ++++-|
T Consensus 242 vk~~~~~l~VPa~aEiVlEG~i~~~--e~~~EGPFGD 276 (477)
T COG0043 242 VKCDTNGLPVPADAEIVLEGYIDPE--ERAPEGPFGD 276 (477)
T ss_pred EEECCCCCCCCCCCEEEEEEEECCC--CCCCCCCCCC
T ss_conf 9826878515678759999997787--5026788505
No 61
>pfam06325 PrmA Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.
Probab=22.23 E-value=50 Score=13.47 Aligned_cols=16 Identities=38% Similarity=0.389 Sum_probs=10.9
Q ss_pred CCCHHHHHHHHHHHHHHC
Q ss_conf 563235899999999817
Q gi|254780710|r 223 AACGSAACASVVASGCLH 240 (296)
Q Consensus 223 lACGTGA~Asa~~~~~~~ 240 (296)
..||||..|- ++.++|
T Consensus 167 ~GcGSGILaI--aA~klG 182 (294)
T pfam06325 167 VGCGSGILAI--AALKLG 182 (294)
T ss_pred ECCCHHHHHH--HHHHCC
T ss_conf 0565089999--999759
No 62
>cd00580 CHMI 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) is a trimeric enzyme catalyzing the isomerization of the unsaturated ketone 5-(carboxymethyl)-2-hydroxymuconate to 5-(carboxymethyl)-2-oxo-3-hexene-1,6-dionate. This is one step in the homoprotocatechuate pathway, one of the microbial meta-fission pathways that degrade aromatic carbon sources to citric acid cycle intermediates. Despite the structural similarity of CHMI with 4-oxalocrotonate tautomerase (4-OT) and macrophage migration inhibitory factor (MIF), there is no significant sequence similarity among these protein families, and therefore, they are not combined in one hierarchy.
Probab=21.86 E-value=49 Score=13.52 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCH-HHHHH----HHHCCCCCCCCCC-CCCEE
Q ss_conf 4279742557686-88876----3100023323755-55146
Q gi|254780710|r 165 PHAIFFVEDDLYH-YDLAS----FGNLLAKHPMFSE-GVNLS 200 (296)
Q Consensus 165 PH~Vi~v~d~i~~-~~l~~----~g~~i~~~~~Fp~-gvNV~ 200 (296)
||+++.-+++++. .++.. +...+-....||. ++-+=
T Consensus 1 PH~iiEyS~nL~~~~d~~~l~~~l~~~~~~sg~F~~~~iK~R 42 (113)
T cd00580 1 PHLIIEYSANLEGRADIPELLRALHDALVASGLFPLGGIKVR 42 (113)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 909999378800037999999999999996699885464886
No 63
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=21.70 E-value=54 Score=13.26 Aligned_cols=29 Identities=14% Similarity=0.091 Sum_probs=23.4
Q ss_pred CCCEEEEEECCCCCCCCEEEEEEECCCCC
Q ss_conf 43558998258888866899997178762
Q gi|254780710|r 45 HFDQIMLIHDFQDASVDAFIRIINCDGSE 73 (296)
Q Consensus 45 G~Dgli~i~~~~~~~~d~~m~~fN~DGS~ 73 (296)
++|+-+.|.-+.++..+--++||++||.+
T Consensus 96 ~a~~GImITASHNP~~~NGiK~~~~~G~~ 124 (487)
T cd05799 96 GADAGIMITASHNPKEYNGYKVYWEDGAQ 124 (487)
T ss_pred CCCEEEEEECCCCCCCCCCEEEECCCCCC
T ss_conf 99857999348997522777987799984
No 64
>KOG3480 consensus
Probab=21.62 E-value=30 Score=14.95 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=13.5
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 97178762123320332231110013
Q gi|254780710|r 66 IINCDGSEVQSCGNGMRCVVRFLTSR 91 (296)
Q Consensus 66 ~fN~DGS~A~mCGNG~Rc~a~yl~~~ 91 (296)
|.-+|=+..|+|= ==||||+|+.-+
T Consensus 44 y~EaeLtKGE~~C-iDRCVaKy~~~n 68 (90)
T KOG3480 44 YKEAELTKGESVC-IDRCVAKYLDVN 68 (90)
T ss_pred CCCCCCCCCHHHH-HHHHHHHHHHHH
T ss_conf 3600025751668-999999999999
No 65
>KOG0697 consensus
Probab=21.59 E-value=54 Score=13.24 Aligned_cols=76 Identities=21% Similarity=0.305 Sum_probs=43.5
Q ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHCC-CCCCEEEEEECCCCEEE-EECCCCEEEECCCCCCCCHHHCCCCCCCCCCC
Q ss_conf 99997178762123320332231110013-57640379835883799-98577427740368777777685656565434
Q gi|254780710|r 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVA-KENRDGSISVDMGEPILDWKLIPLARSFDKMD 140 (296)
Q Consensus 63 ~m~~fN~DGS~A~mCGNG~Rc~a~yl~~~-~~~~~~~i~T~~g~~~~-~~~~~~~v~V~mG~p~~~~~~ip~~~~~~~~~ 140 (296)
+.-|.|.--|+|-.|+||.-|++--=.+- .++..-+|+--.|-+-. ++++.-.|+-.+| .++.+.+|-..+.+++.
T Consensus 138 h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeRIqnAGGSVMIqRvNGsLAVSRAlG--DydyK~v~~kgp~eQlV 215 (379)
T KOG0697 138 HIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKERIQNAGGSVMIQRVNGSLAVSRALG--DYDYKNVPGKGPTEQLV 215 (379)
T ss_pred EEEEEECCCCHHHEECCCCEEEECCCCCCCCHHHHHHHHCCCCEEEEEEECCEEEEEHHCC--CCCCCCCCCCCCHHCCC
T ss_conf 6999964762120015882577515788888678899755897389998546253103306--75424588889220246
No 66
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982 Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=21.53 E-value=52 Score=13.38 Aligned_cols=126 Identities=13% Similarity=0.119 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHCCC-CCC--EEEEEECCCCEEEEECCCCEE-EECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEE
Q ss_conf 03322311100135-764--037983588379998577427-74036877777768565656543443011057777402
Q gi|254780710|r 79 NGMRCVVRFLTSRM-KRK--SFTFETIRGILVAKENRDGSI-SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFL 154 (296)
Q Consensus 79 NG~Rc~a~yl~~~~-~~~--~~~i~T~~g~~~~~~~~~~~v-~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~ 154 (296)
+.+|| .+.+.|+. +.. .+.|.+..-+.+..=+....| +|.+-. ..+-... ...
T Consensus 184 d~fRA-~k~~~~r~~~~~eG~I~~l~n~~v~Ei~G~~~~~V~~v~i~N-------------~~t~e~~---------~l~ 240 (321)
T TIGR01292 184 DKFRA-EKILLDRLKKNPEGKIEFLWNSTVEEIVGDNSKKVESVKIKN-------------TVTGEEE---------ELK 240 (321)
T ss_pred CCCCC-CHHHHHHHHHCCCCCEEEECCCEEEEEECCCCEEEEEEEEEE-------------CCCCEEE---------EEE
T ss_conf 86363-289998998378987899648689999617831553358996-------------2388488---------998
Q ss_pred CCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCEEEEE----ECCC-CEEEEEECCCCCCCCCCCHHH
Q ss_conf 1309995587427974255768688876310002332-375555146799----7288-728999804678766563235
Q gi|254780710|r 155 RNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHP-MFSEGVNLSIAR----VTSL-ESLDLRTWERGVGLTAACGSA 228 (296)
Q Consensus 155 ~~~~~v~iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~-~Fp~gvNV~fv~----v~~~-~~I~iRt~ERGvGeTlACGTG 228 (296)
-++.++.+|--=..=|+++ ....++.+-|=.+-... --...|||.=+- +.++ ..=++-| |||+|
T Consensus 241 vdGvF~aIG~~P~t~~~~~-~G~~~~D~~GyI~t~~~~Gn~~~Tsv~GvFAAGDv~~kW~~rQ~vT---------Aag~G 310 (321)
T TIGR01292 241 VDGVFIAIGHEPNTELLKG-LGLLELDEGGYIVTDEGLGNTMRTSVPGVFAAGDVRDKWGFRQAVT---------AAGDG 310 (321)
T ss_pred ECEEEEEECCCCCHHHHHC-CCCEEECCCCCEEECCCCCCEEECCCCCEEEEEEEECCCCCEEEEE---------EECHH
T ss_conf 4447898412032057650-7834676998688617548612306686897304406886137678---------70006
Q ss_pred HHHHHHHHH
Q ss_conf 899999999
Q gi|254780710|r 229 ACASVVASG 237 (296)
Q Consensus 229 A~Asa~~~~ 237 (296)
+.||.-+..
T Consensus 311 ~~AA~~a~~ 319 (321)
T TIGR01292 311 CIAALSAER 319 (321)
T ss_pred HHHHHHHHH
T ss_conf 899999987
No 67
>PRK10291 glyoxalase I; Provisional
Probab=21.49 E-value=55 Score=13.23 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=35.7
Q ss_pred CCEEEEECCCCCCHH--HHHHHHHCCCCCC-CCCCCCCEEEEEECCCCEEEEEECCCCC-CCCC
Q ss_conf 742797425576868--8876310002332-3755551467997288728999804678-7665
Q gi|254780710|r 164 NPHAIFFVEDDLYHY--DLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTA 223 (296)
Q Consensus 164 NPH~Vi~v~d~i~~~--~l~~~g~~i~~~~-~Fp~gvNV~fv~v~~~~~I~iRt~ERGv-GeTl 223 (296)
--|+.+-|+ |+++. .|.+.|-.+...+ -.+.| ...++-+.+++=..+...||+- |.+|
T Consensus 66 ~gHiA~~Vd-Di~~~~~~l~~~G~~v~~~~~~~~~g-~~~~aFv~DPDGy~IElie~~~~g~~~ 127 (129)
T PRK10291 66 YGHIALSVD-NAAEACEKIRQNGGNVTREAGPVKGG-TTVIAFVEDPDGYKIELIEEKDAGRGL 127 (129)
T ss_pred EEEEEEEEC-CHHHHHHHHHHCCCCEEECCCCCCCC-CEEEEEEECCCCCEEEEEECCCCCCCC
T ss_conf 789999819-99999999997499043567678999-558999999999889999878630111
No 68
>PRK03124 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=21.04 E-value=56 Score=13.17 Aligned_cols=66 Identities=26% Similarity=0.348 Sum_probs=36.2
Q ss_pred CCCCCCCCCEEEEEECCCCEEEEEEC-CCCC-C-CCCCCHHHH---HHHHHHHHHHCCCCCCEEEECCC-CEEEE
Q ss_conf 32375555146799728872899980-4678-7-665632358---99999999817889807999079-57999
Q gi|254780710|r 190 HPMFSEGVNLSIARVTSLESLDLRTW-ERGV-G-LTAACGSAA---CASVVASGCLHKTNRAVSVKMLG-GGLLI 257 (296)
Q Consensus 190 ~~~Fp~gvNV~fv~v~~~~~I~iRt~-ERGv-G-eTlACGTGA---~Asa~~~~~~~~~~~~v~V~~pG-G~L~v 257 (296)
|++-|+| |.-+-+++..+|.+-|| |+|. - --..||..+ .|.-+....++-...+++....| |.+.|
T Consensus 47 h~F~P~G--vT~v~lLaESHisiHTwPE~g~aavDiftCg~~~~P~~a~~~L~~~lk~~~~~~~~~~RG~~~~~~ 119 (127)
T PRK03124 47 HKFAPQG--VSGVVVISESHLTIHTWPEHGYAAVDVFTCGDRVDPWDAANYIAEGLNAKTREAIELPRGVGPFPV 119 (127)
T ss_pred EECCCCC--EEEEEEEECCEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 8659996--899999402168999667688599999945999999999999999859892799998189867526
No 69
>TIGR02630 xylose_isom_A xylose isomerase; InterPro: IPR013452 Xylose isomerase (5.3.1.5 from EC) is an enzyme which interconverts D-xylose and D-xylulose.; GO: 0009045 xylose isomerase activity.
Probab=20.97 E-value=35 Score=14.47 Aligned_cols=206 Identities=17% Similarity=0.222 Sum_probs=93.3
Q ss_pred CCCEEEEECCCCC-CCCCHHHHHHH---------CC--CCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHH
Q ss_conf 7738999477888-78888899872---------03--567143558998258888866899997178762123320332
Q gi|254780710|r 15 GNKILVIDMRGCH-DNITSDAINAL---------ST--DDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMR 82 (296)
Q Consensus 15 GNDFiiiD~~~~~-~~~~~~~i~~~---------~~--~~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~R 82 (296)
|.-||..=.|+-. ..|..+..+.+ +. .+-|||+|-++|+|.+.++.-=| |.-|-..
T Consensus 180 GENYVFWGGREGYetLLNTD~~~Eld~lArF~~mAvdYa~~IGF~G~fLIEPKPkEPTKHQ---YDfDaAT--------- 247 (437)
T TIGR02630 180 GENYVFWGGREGYETLLNTDMKLELDHLARFLQMAVDYAKKIGFKGQFLIEPKPKEPTKHQ---YDFDAAT--------- 247 (437)
T ss_pred CCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC---CCHHHHH---------
T ss_conf 8862431753033214452177899999889999999988468998441167631218887---7067999---------
Q ss_pred HHHHHHHCCCCCCE--EEEEECCCCEEEE-------E---C-CCCEEEECCCCCCCCHHHCCCCCCCCCC--------CC
Q ss_conf 23111001357640--3798358837999-------8---5-7742774036877777768565656543--------44
Q gi|254780710|r 83 CVVRFLTSRMKRKS--FTFETIRGILVAK-------E---N-RDGSISVDMGEPILDWKLIPLARSFDKM--------DR 141 (296)
Q Consensus 83 c~a~yl~~~~~~~~--~~i~T~~g~~~~~-------~---~-~~~~v~V~mG~p~~~~~~ip~~~~~~~~--------~~ 141 (296)
+--||.+.-..+. +.||+..-.+... . . -=|+|=.|=|-+.+.|-.--...+..++ ..
T Consensus 248 -~~~FL~~ygL~~~FKlNiEaNHAtLAGHTF~HEL~~A~~~g~LGSiDAN~GD~LlGWDTDqFPtd~y~~tlaMyevl~~ 326 (437)
T TIGR02630 248 -VIAFLKKYGLDKDFKLNIEANHATLAGHTFEHELRVARDNGLLGSIDANQGDLLLGWDTDQFPTDVYETTLAMYEVLKN 326 (437)
T ss_pred -HHHHHHHHCCCCCCEEEEEHHHHHHHCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf -9999987289655223110211554022248899999981993020004788755655114767678999999999971
Q ss_pred CEEECCCCCCCEECCEEEEECCCCEEEEECCCCCCHHHHH--HHH------HCCCCC-CCCCCCCCEEEEEECCCCEEEE
Q ss_conf 3011057777402130999558742797425576868887--631------000233-2375555146799728872899
Q gi|254780710|r 142 DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA--SFG------NLLAKH-PMFSEGVNLSIARVTSLESLDL 212 (296)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~v~iGNPH~Vi~v~d~i~~~~l~--~~g------~~i~~~-~~Fp~gvNV~fv~v~~~~~I~i 212 (296)
..+..+.+|+.- =+. ..+.+..||- +|+ +-|+.. .+-.+| .+-+++.. |-
T Consensus 327 GGl~~GGlNFDA--------------KvR-R~S~~~~DLf~aHIaGMDtfA~GLk~A~~l~~dg---~L~~~~~~---RY 385 (437)
T TIGR02630 327 GGLTTGGLNFDA--------------KVR-RESFDPEDLFLAHIAGMDTFARGLKVAAKLLEDG---FLDKIVAE---RY 385 (437)
T ss_pred CCCCCCCCCCCC--------------CCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHH---HC
T ss_conf 786688866543--------------557-6788533577676889999999999999987248---42268997---51
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCEEE
Q ss_conf 98046787665632358999999998178898079990795799
Q gi|254780710|r 213 RTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLL 256 (296)
Q Consensus 213 Rt~ERGvGeTlACGTGA~Asa~~~~~~~~~~~~v~V~~pGG~L~ 256 (296)
..|.-|+|--..-|....+..... .+.+-+. +.+..+.|.++
T Consensus 386 ~s~~~g~G~~I~~G~~~l~~L~~y-a~~~~~~-~~~~~~SGrqE 427 (437)
T TIGR02630 386 SSFNSGIGAEIEAGKTDLESLEKY-ALEKGDD-LEPENKSGRQE 427 (437)
T ss_pred CCCCCHHHHHHHHCCCCHHHHHHH-HHCCCCC-EEEECCCCHHH
T ss_conf 442513468887147888899999-8278985-21212872578
No 70
>KOG4042 consensus
Probab=20.74 E-value=28 Score=15.17 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=44.0
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEEEC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEE
Q ss_conf 2332375555146799728872899980-467876656323589999999981788980799907957999995
Q gi|254780710|r 188 AKHPMFSEGVNLSIARVTSLESLDLRTW-ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH 260 (296)
Q Consensus 188 ~~~~~Fp~gvNV~fv~v~~~~~I~iRt~-ERGvGeTlACGTGA~Asa~~~~~~~~~~~~v~V~~pGG~L~v~~~ 260 (296)
-.+..|.-|.-++-.++-+++-|...-| +|||-.|-.|--|||+...-.- . +...+.|+-.-+.-++...
T Consensus 82 Gt~NvFeVgc~s~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q--~-lpent~vYga~~L~R~~~~ 152 (190)
T KOG4042 82 GTWNVFEVGCKSSAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQ--N-LPENTSVYGATNLSRTTKT 152 (190)
T ss_pred ECCCEEEEECHHHHHHHCCCCEEEEEEEECCCCEECCCCEECCCEEEECCC--C-CCCCCEEECCCCCCCEECC
T ss_conf 236358861233455516765476666864994872796541405771103--4-6975168721340100027
No 71
>KOG0647 consensus
Probab=20.74 E-value=57 Score=13.13 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=8.7
Q ss_pred EEECCCCEEEEEC
Q ss_conf 9955874279742
Q gi|254780710|r 159 VVSMGNPHAIFFV 171 (296)
Q Consensus 159 ~v~iGNPH~Vi~v 171 (296)
.|.+++.|++++-
T Consensus 170 vVata~r~i~vyn 182 (347)
T KOG0647 170 VVATAERHIAVYN 182 (347)
T ss_pred EEEECCCCEEEEE
T ss_conf 7884577279998
No 72
>KOG1529 consensus
Probab=20.67 E-value=50 Score=13.50 Aligned_cols=48 Identities=10% Similarity=0.161 Sum_probs=25.0
Q ss_pred CEEEEECCCCCCEEEEECCCC-----CC-CCCHHHHHHHCCCCCCCC-CEEEEEE
Q ss_conf 113785176773899947788-----87-888889987203567143-5589982
Q gi|254780710|r 6 VDFAKMEGIGNKILVIDMRGC-----HD-NITSDAINALSTDDNTHF-DQIMLIH 53 (296)
Q Consensus 6 i~F~Kmhg~GNDFiiiD~~~~-----~~-~~~~~~i~~~~~~~giG~-Dgli~i~ 53 (296)
..|.-.|--|=+|+-+|.-.. +. ..+.+.....+++-|++- |.+++-.
T Consensus 39 ~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~n~d~vViYd 93 (286)
T KOG1529 39 FEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVDNGDHVVIYD 93 (286)
T ss_pred HHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 3344316898515421123467886644476078999999862989997699973
No 73
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family; InterPro: IPR011896 A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This entry describes the beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes..
Probab=20.61 E-value=57 Score=13.11 Aligned_cols=116 Identities=18% Similarity=0.228 Sum_probs=61.7
Q ss_pred CCC-HHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEEC
Q ss_conf 320-3322311100135764037983588379998577427740368777777685656565434430110577774021
Q gi|254780710|r 77 CGN-GMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR 155 (296)
Q Consensus 77 CGN-G~Rc~a~yl~~~~~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~ 155 (296)
||| |++-+-+=+..++..+.-++-+.+|+=.+..... -|.|++=. .+.=+.+|++..
T Consensus 7 CGDFGIL~AL~~AL~EL~LdP~qvvVVSGIGCS~ktPh-Y~n~~g~h-~LHGRA~P~A~G-------------------- 64 (302)
T TIGR02177 7 CGDFGILSALQKALAELNLDPEQVVVVSGIGCSAKTPH-YVNVNGFH-GLHGRALPVATG-------------------- 64 (302)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC-CCCCCCCC-CCCCCCCHHHHH--------------------
T ss_conf 88677899999999862889852799813131134773-00136645-233563101101--------------------
Q ss_pred CEEEEECCCCEEEEECCC---CCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEE-------EEECCCCC-CCCCC
Q ss_conf 309995587427974255---76868887631000233237555514679972887289-------99804678-76656
Q gi|254780710|r 156 NPFVVSMGNPHAIFFVED---DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD-------LRTWERGV-GLTAA 224 (296)
Q Consensus 156 ~~~~v~iGNPH~Vi~v~d---~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~-------iRt~ERGv-GeTlA 224 (296)
|=+=|||+-+.|.- |.-.+=..++=...| =|+++..++.+|+++ -=|-.+|+ =.+++
T Consensus 65 ----~KlANP~L~Viv~GGDGD~~GIG~~Hfva~gR--------RN~dIt~l~~DN~VYGLTKGQAsPTl~~G~kTk~lp 132 (302)
T TIGR02177 65 ----IKLANPKLKVIVVGGDGDLYGIGGNHFVAAGR--------RNVDITVLVHDNQVYGLTKGQASPTLLKGVKTKSLP 132 (302)
T ss_pred ----HHHCCCCCEEEEEECCCCCHHHHHHHHHHHHC--------CCCCCEEEEECCEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf ----20108984689860686410110577875411--------478824884247054666553452146871042335
Q ss_pred CH
Q ss_conf 32
Q gi|254780710|r 225 CG 226 (296)
Q Consensus 225 CG 226 (296)
-|
T Consensus 133 ~p 134 (302)
T TIGR02177 133 YP 134 (302)
T ss_pred CC
T ss_conf 78
No 74
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=20.58 E-value=57 Score=13.11 Aligned_cols=14 Identities=21% Similarity=0.088 Sum_probs=7.8
Q ss_pred EEECCCCEEEEEEE
Q ss_conf 99907957999995
Q gi|254780710|r 247 SVKMLGGGLLIEWH 260 (296)
Q Consensus 247 ~V~~pGG~L~v~~~ 260 (296)
..-.|||.|.+++-
T Consensus 239 ~~L~pgG~l~lEiG 252 (284)
T TIGR03533 239 DHLNENGVLVVEVG 252 (284)
T ss_pred HHCCCCCEEEEEEC
T ss_conf 84256978999979
No 75
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=20.31 E-value=57 Score=13.11 Aligned_cols=13 Identities=23% Similarity=0.079 Sum_probs=7.4
Q ss_pred EEECCCCEEEEEE
Q ss_conf 9990795799999
Q gi|254780710|r 247 SVKMLGGGLLIEW 259 (296)
Q Consensus 247 ~V~~pGG~L~v~~ 259 (296)
..-.|||.|.+++
T Consensus 251 ~~L~pgG~L~~Ei 263 (307)
T PRK11805 251 DYLTEDGVLVCEV 263 (307)
T ss_pred HHCCCCCEEEEEE
T ss_conf 7447696899997
Done!