HHsearch alignment of GI: 254780710 and MMDB domain: 2gke_A_
>2gke_A (A:) DAP epimerase, diaminopimelate epimerase; enzyme-inhibitor complex, covalently bound inhibitor, isomerase; HET: ZDP; 1.35A {Haemophilus influenzae}
Probab=100.00 E-value=0 Score=323.32 Aligned_cols=270 Identities=35% Similarity=0.587 Sum_probs=237.9
Q ss_pred CEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHCCC-CCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 113785176773899947788878888899872035-6714355899825888886689999717876212332033223
Q gi|254780710|r 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84 (296)
Q Consensus 6 i~F~Kmhg~GNDFiiiD~~~~~~~~~~~~i~~~~~~-~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~Rc~ 84 (296)
|+|+|+|+.||+|+||+..+....++.+..++++.+ +|+++|+.+|+.|+.+..+|++|+|||+||||++|||||+||+
T Consensus 1 ~~F~~~~~~GN~~~Vv~~~~~~~~l~~~~~q~ia~e~r~~~~~~~~fv~~~~~~~~~~~~r~f~~~G~e~~~CGh~t~a~ 80 (274)
T 2gke_A 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFNADGSEVSQCGNGARCF 80 (274)
T ss_dssp CEEEEEEETTEEEEEEECSSSCCCCCHHHHHHHHCTTTSCCCSEEEEEECCSSTTSSEEEEEEETTSCEESCCHHHHHHH
T ss_pred CEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHHHHH
T ss_conf 98999864998399997898867899999998756687857657999972778875506898606645765311388999
Q ss_pred HHHHHCC--CCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEECCEEEEEC
Q ss_conf 1110013--57640379835883799985774277403687777776856565654344301105777740213099955
Q gi|254780710|r 85 VRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 (296)
Q Consensus 85 a~yl~~~--~~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 162 (296)
+++|+++ ...+.+.++|.+|.+.++...++.+.++++.|.+....+|......... ....... ....+..+++
T Consensus 81 a~~l~~~~~~~~~~~~l~t~~g~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~ 155 (274)
T 2gke_A 81 ARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGEPIWEPAKIPFTANKFEKN---YILRTDI--QTVLCGAVSM 155 (274)
T ss_dssp HHHHHHTTSCCCSEEEEECSSCEEEEEECTTSCEEEECCCCBCCGGGTTCCCSSCCSS---EEEECSS--CEEEEEEEES
T ss_pred HHHHHHHCCCCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCC---EEEECCC--CEEEEEEEEC
T ss_conf 9999862235431269996587247752136258741210235543244444444210---0330122--1178999951
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 87427974255768688876310002332375555146799728872899980467876656323589999999981788
Q gi|254780710|r 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 (296)
Q Consensus 163 GNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~~~ 242 (296)
|+||++++++ +.+..++..+.+.++.++.|+++.|+.|++..+++.++.|+||||+|.|.+||||++|++++++..+++
T Consensus 156 g~~~l~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~f~p~~g~~ed~gTGsaa~~l~~~~~~~~ 234 (274)
T 2gke_A 156 GNPHCVVQVD-DIQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234 (274)
T ss_dssp SSEEEEEECS-CTTTSCHHHHHHHHHTCTTCTTCCEEEEEEEEETTEEEEEEEETTTEECSCCHHHHHHHHHHHHHTTSS
T ss_pred CCCCEEEEEE-CCCHHHHHHHCHHHHCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 8996799960-310336977573553023212235540368832884999997577510245661178999999982989
Q ss_pred CCCEEEECCCCEEEEEEE-CCCEEEEEECEEEEEEEEEEE
Q ss_conf 980799907957999995-898199994628999889984
Q gi|254780710|r 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 (296)
Q Consensus 243 ~~~v~V~~pGG~L~v~~~-~~~~i~l~Gpa~~vf~G~~~i 281 (296)
++...+..|||.+.+++. ++++|+++|+|.++++|++.|
T Consensus 235 ~~~~~~~~~~G~~~v~~~~~~~~v~i~G~a~~~~~g~~~i 274 (274)
T 2gke_A 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 (274)
T ss_dssp CSEEEEEETTEEEEEEECCTTSCEEEEECCEEEEEEECCC
T ss_pred CCCEEEECCCCEEEEEEECCCCEEEEEECCEEEEEEEEEC
T ss_conf 9718999289779999987998899990529999999989