HHsearch results for GI: 254780710 and protein with PDBid: 3fve_A
>3fve_A DAP epimerase, diaminopimelate epimerase; alpha/beta, amino-acid biosynthesis, cytoplasm, isomerase, lysine biosynthesis; 2.60A {Mycobacterium tuberculosis}
Probab=100.00 E-value=0 Score=551.89 Aligned_cols=262 Identities=23% Similarity=0.329 Sum_probs=216.2
Q ss_pred CEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHCCC-CCCCCCEEEEEECC--------------CCCCCCEEEEEEECC
Q ss_conf 113785176773899947788878888899872035-67143558998258--------------888866899997178
Q gi|254780710|r 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDF--------------QDASVDAFIRIINCD 70 (296)
Q Consensus 6 i~F~Kmhg~GNDFiiiD~~~~~~~~~~~~i~~~~~~-~giG~Dgli~i~~~--------------~~~~~d~~m~~fN~D 70 (296)
|+|+||||+||||||+|.+..+..++++.++++|+| +||||||||+|+++ ....+||+|+|||+|
T Consensus 2 i~F~Kmhg~GNDFiiid~~~~~~~~~~~~i~~lc~R~~GiG~Dgll~i~~~~~~~~~~~~~~~~~~~~~~D~~m~ifN~D 81 (290)
T 3fve_A 2 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLDSLPEGVRVTDWYMDYRNAD 81 (290)
T ss_dssp EEEEEEESSSCEEEEEECTTCCSCCCHHHHHHHHCTTTSCCCSEEEEEEEHHHHHHTTSCSSCCTTCCTTSEEEEEEETT
T ss_pred CEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 87997353897099997997768999999998627788857787999714664332222224556665655699998899
Q ss_pred CCCCCCCCCHHHHHHHHHHCC--CCCCEEEEEECCCCEEEEECC----CCEEEECCCCCCCCHHHCCCCCCCCCCCCCEE
Q ss_conf 762123320332231110013--576403798358837999857----74277403687777776856565654344301
Q gi|254780710|r 71 GSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENR----DGSISVDMGEPILDWKLIPLARSFDKMDRDRF 144 (296)
Q Consensus 71 GS~A~mCGNG~Rc~a~yl~~~--~~~~~~~i~T~~g~~~~~~~~----~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~ 144 (296)
||+|+|||||+||+|+||+++ ..++++.++|.+|.+.+.... ...++|+|+.|.......+
T Consensus 82 GSeaemCGNG~Rcva~~l~~~~~~~~~~~~i~T~~G~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~------------- 148 (290)
T 3fve_A 82 GSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTCHHVEAAYADVSVDMGKANRLGAGEA------------- 148 (290)
T ss_dssp SCBCCTTCTTHHHHHHHHHHTTSCCCSEEEEECTTCCEEEEEEEECSSEEEEEEECCCCEEEEEEEB-------------
T ss_pred CCHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCC-------------
T ss_conf 8877667478999999999858873111665530462466751145544216853776531464212-------------
Q ss_pred ECCCCCCCEECCEEEEECCCCEEEEECCC-CCCHHHHHHHHH-CCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCC
Q ss_conf 10577774021309995587427974255-768688876310-0023323755551467997288728999804678766
Q gi|254780710|r 145 HIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLYHYDLASFGN-LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 (296)
Q Consensus 145 ~~~~~~~~~~~~~~~v~iGNPH~Vi~v~d-~i~~~~l~~~g~-~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeT 222 (296)
........+++|+|||||+|+|+++ +++.+++..+|. ++++|+.||+|+||+|++++++++|++||||||||||
T Consensus 149 ----~~~~~~~~~~~v~~GNPH~V~~~~~~~~~~~~~~~~g~~~~~~~~~fp~g~NV~fv~~~~~~~I~~rt~ERGvGeT 224 (290)
T 3fve_A 149 ----VVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGET 224 (290)
T ss_dssp ----C-----CEEEEEESSSEEEEEEETTCCTTTTCSCCCC--CCBCTTTCTTCCEEEEEECCBTTEEEEEEEBTTTBSC
T ss_pred ----CCCCCCCCEEEECCCCCCEEEEECCCEECCHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCC
T ss_conf ----1001223059972589728998402000323344421641113224888644268997057832786540467877
Q ss_pred CCCHHHHHHHHHHHH-HHCCCCCCEEEECCCCEEEEEEECCCEEEEEECEEEEEEEEEEECCCCCCC
Q ss_conf 563235899999999-817889807999079579999958981999946289998899841320001
Q gi|254780710|r 223 AACGSAACASVVASG-CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 (296)
Q Consensus 223 lACGTGA~Asa~~~~-~~~~~~~~v~V~~pGG~L~v~~~~~~~i~l~Gpa~~vf~G~~~i~~~~~~~ 288 (296)
+||||||||+|+++. ++++.+++++|++|||.|.|+|. +++++|+|||++||+|+| +.+|.+
T Consensus 225 lACGTGa~Aaa~a~~~~~~~~~~~v~V~~~GG~L~v~~~-~~~v~l~Gpa~~Vf~G~i---~~~~~~ 287 (290)
T 3fve_A 225 RSCGTGTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTVT-DATSFLRGPSVLVARGDL---ADDWWN 287 (290)
T ss_dssp SCCHHHHHHHHHHHHHHTTCSSEEEEEEETTEEEEEEEC-SSCEEEEEEEEEEEEEEE---CHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEEE-CCCEEEEECCEEEEEEEE---CHHHHH
T ss_conf 464278999999999976997975999958987999997-997999907799999999---999994