HHSEARCH alignment of GI: 254780710 and SCOP domain: d1tm0a_

Alignment
>d1tm0a_ d.21.1.3 (A:) Proline racemase {Brucella melitensis [TaxId: 29459]}
Probab=98.20  E-value=0.00025  Score=45.38  Aligned_cols=263  Identities=14%  Similarity=0.099  Sum_probs=135.1

Q ss_pred             CCCCEEEEECCCCCCEEEE-ECCCCCCCCCHH----------HHH-HHCC-CCCC-CCCEEEEEECCCCCCCCEEEEEEE
Q ss_conf             7541137851767738999-477888788888----------998-7203-5671-435589982588888668999971
Q gi|254780710|r    3 SSMVDFAKMEGIGNKILVI-DMRGCHDNITSD----------AIN-ALST-DDNT-HFDQIMLIHDFQDASVDAFIRIIN   68 (296)
Q Consensus         3 ~~mi~F~Kmhg~GNDFiii-D~~~~~~~~~~~----------~i~-~~~~-~~gi-G~Dgli~i~~~~~~~~d~~m~~fN   68 (296)
                      +.||+-.-||..|+=+=|| ........-+-.          .+| .|.. -+|- .-=|-|+ .||.++.+|+-+.|++
T Consensus         4 ~~~i~~id~Ht~GEp~RvI~~G~p~l~G~t~~ek~~~~~~~D~lR~~Lm~EPRGh~~M~gall-~pp~~~~ad~Gvif~~   82 (332)
T d1tm0a_           4 TKVIHIVGCHAEGEVGDVIVGGVAPPPGETVWEQSRFIANDETLRNFVLNKPRGGVFRHVNLL-VPPKDPRAQMGFIIME   82 (332)
T ss_dssp             SCCEEEEEEEETTEECEEEEESCCCCSSSSHHHHHHHHHHHCHHHHHHHSTTTSCSSCCEEEE-ECCCSSSCSEEEECCC
T ss_pred             CCEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE-ECCCCCCCCEEEEEEC
T ss_conf             536999967779887479974888999999999999987544899997528998875589998-4899988878999980


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHCC--C----CCCEEEEEECCCCEEEEEC-CCCE-EEECC-CCCCCCHH-HCCCCCCCCC
Q ss_conf             78762123320332231110013--5----7640379835883799985-7742-77403-68777777-6856565654
Q gi|254780710|r   69 CDGSEVQSCGNGMRCVVRFLTSR--M----KRKSFTFETIRGILVAKEN-RDGS-ISVDM-GEPILDWK-LIPLARSFDK  138 (296)
Q Consensus        69 ~DGS~A~mCGNG~Rc~a~yl~~~--~----~~~~~~i~T~~g~~~~~~~-~~~~-v~V~m-G~p~~~~~-~ip~~~~~~~  138 (296)
                      ++|-. .|||-|+=|++.+|.+.  .    +..++.|+|.+|++.++.. .++. .+|.. -.|+|... ++++..    
T Consensus        83 ~~gy~-~MCGh~tI~~~t~lve~G~v~~~~p~t~~~ietPaG~V~v~~~~~~g~v~~V~~~nVpsf~~~~d~~v~v----  157 (332)
T d1tm0a_          83 PADTP-PMSGSNSICVSTVLLDSGIIAMQEPVTHMVLEAPGGIIEVEAECRNGKAERISVRNVPSFADRLDAPLDV----  157 (332)
T ss_dssp             SSCCC-SCCHHHHHHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEEECSSSEEEEEEECCCBEECCCSEEEEC----
T ss_pred             CCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEEEECCCCHHHHCCCEEEC----
T ss_conf             67457-7756538888589875313267899249997279747999999949948799987435558657967976----


Q ss_pred             CCCCEEECCCCCCCEECCEEEEECCCCEEEEECCC---CC---CHHHHHHHHHCCCCC-----CCC-CC--CCCEEEEEE
Q ss_conf             34430110577774021309995587427974255---76---868887631000233-----237-55--551467997
Q gi|254780710|r  139 MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED---DL---YHYDLASFGNLLAKH-----PMF-SE--GVNLSIARV  204 (296)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~v~iGNPH~Vi~v~d---~i---~~~~l~~~g~~i~~~-----~~F-p~--gvNV~fv~v  204 (296)
                                .... ....-.+.=||-=+++-.++   ++   +.-+|..+|..|+..     +.. |+  .-.+.+.++
T Consensus       158 ----------~~~G-~v~~DiayGG~fyaivda~~lgl~l~~~~~~~L~~~g~~i~~a~~~~~~~~hp~~~~~~i~~~~~  226 (332)
T d1tm0a_         158 ----------TGLG-TIMVDTAYGGDSFVIVDAAQIGMKIEPGQARELAEIGVKITKAANEQLGFRHPERDWRHISFCQI  226 (332)
T ss_dssp             ----------SSSS-EEEEEEEESSSEEEEEEGGGTC---CHHHHHHHHHHHHHHHCC------CCBTTBSCCSCCEEEE
T ss_pred             ----------CCCC-CEEEEEEECCEEEEEEECHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEE
T ss_conf             ----------7987-17988750853899983123376446404999999999999877741773468998665999985


Q ss_pred             CCC-----CEEEEE---ECCCCC-CCCCCCHHHHHHHHHHHHHHCCCC--CCEEEECCCCE-EEEEEEC----CC----E
Q ss_conf             288-----728999---804678-766563235899999999817889--80799907957-9999958----98----1
Q gi|254780710|r  205 TSL-----ESLDLR---TWERGV-GLTAACGSAACASVVASGCLHKTN--RAVSVKMLGGG-LLIEWHD----NN----H  264 (296)
Q Consensus       205 ~~~-----~~I~iR---t~ERGv-GeTlACGTGA~Asa~~~~~~~~~~--~~v~V~~pGG~-L~v~~~~----~~----~  264 (296)
                      .++     +...-|   +|--|. +. --||||.+|-.+..+..|++.  .+...++.=|. -+.++.+    .+    .
T Consensus       227 ~~~~~~~~~~~~~rn~v~~~~g~iDR-SPcGTGTSARlA~l~a~G~l~~Ge~~~~eSIiGs~F~g~i~~~~~~g~~~aVi  305 (332)
T d1tm0a_         227 TEPVTREGDVLTGVNTVAIRPAKFDR-SPTGTGCSARMAVLHAKGQMKAGERFIGKSVLGTEFHCRLDKVLELGGKPAIS  305 (332)
T ss_dssp             ECCCEESSSEEEECEEC-----------CCHHHHHHHHHHHHHTTSCCTTCEEEECCC--CCEEEEEEEEEEETTEEEEE
T ss_pred             CCCCCCCCCCCCEEEEEEECCCCEEC-CCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEEEEECCCCEEE
T ss_conf             48887887652003578768986751-77743289999999976998899849998513883899999998988957799


Q ss_pred             EEEEECEEEEEEEEEEECC
Q ss_conf             9999462899988998413
Q gi|254780710|r  265 VFMTGEAKKEWEGKLDIKT  283 (296)
Q Consensus       265 i~l~Gpa~~vf~G~~~i~~  283 (296)
                      ...+|.|-..-+-++-+..
T Consensus       306 P~I~G~A~itG~~~f~~d~  324 (332)
T d1tm0a_         306 PIISGRAWVTGTSQLMLDP  324 (332)
T ss_dssp             EEEEECEEEEEEEEECCCT
T ss_pred             EEEEEEEEEEEEEEEEECC
T ss_conf             9999999999988999779


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Diaminopimelate epimerase-like
superfamily: Diaminopimelate epimerase-like
family: Proline racemase
domain: Proline racemase
species: Brucella melitensis [TaxId: 29459]