HHSEARCH alignment of GI: 254780710 and SCOP domain: d1u0ka1

Alignment

Probab=97.37  E-value=0.00056  Score=43.13  Aligned_cols=91  Identities=10%  Similarity=0.044  Sum_probs=52.1

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEE-ECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             587427974255768688876310002332375555146799-7288728999804678766563235899999999817
Q gi|254780710|r  162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIAR-VTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH  240 (296)
Q Consensus       162 iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~-v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~  240 (296)
                      .|||=+|++..+.+.......+++.+...+       .-|+. ..++...++|.|--.. |=.=||-++.|++.+....+
T Consensus        16 ~GNpaaVv~~~~~l~~~~mq~IA~e~n~sE-------T~Fv~~~~~~~~~~vR~FTP~~-Ev~~cGH~Tlaaa~~L~~~~   87 (129)
T d1u0ka1          16 TGNGLAVFDDASALDDAAMQAWTRELRQFE-------SIFLLPGDDPRAFRARIFTLEE-ELPFAGHPLLGAAALLHHLR   87 (129)
T ss_dssp             CSEEEEEESCCTTCCHHHHHHHHHHHCCSE-------EEEEEECSCTTEEEEEEEESSC-BCCSCCTHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHCCCE-------EEEEECCCCCCCEEEEEEECCC-CCCCCCCHHHHHHHHHHHHC
T ss_conf             854589998886799999999999839962-------6998358998725899983565-55445647899999999854


Q ss_pred             CC--CCCEEEECCCCEEEEEEE
Q ss_conf             88--980799907957999995
Q gi|254780710|r  241 KT--NRAVSVKMLGGGLLIEWH  260 (296)
Q Consensus       241 ~~--~~~v~V~~pGG~L~v~~~  260 (296)
                      ..  ...+.+.++.|.+.|...
T Consensus        88 ~~~~~~~~~~~t~~g~~~v~~~  109 (129)
T d1u0ka1          88 GGDNEQHWTLHLASKSVALRSV  109 (129)
T ss_dssp             CCSSCEEEEEECSSCEEEEEEE
T ss_pred             CCCCCCEEEEEECCCEEEEEEE
T ss_conf             7789971999977517999999

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Diaminopimelate epimerase-like
superfamily: Diaminopimelate epimerase-like
family: PhzC/PhzF-like
domain: Hypothetical protein PA4716
species: Pseudomonas aeruginosa [TaxId: 287]