HHSEARCH alignment of GI: 254780710 and SCOP domain: d1xuba1

Alignment
>d1xuba1 d.21.1.2 (A:1-128) Phenazine biosynthesis protein PhzF {Pseudomonas fluorescens [TaxId: 294]}
Probab=97.06  E-value=0.0034  Score=37.95  Aligned_cols=100  Identities=18%  Similarity=0.205  Sum_probs=71.8

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEE-ECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             587427974255768688876310002332375555146799-7288728999804678766563235899999999817
Q gi|254780710|r  162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIAR-VTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH  240 (296)
Q Consensus       162 iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~-v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~  240 (296)
                      -|||=+|++..+++.......+++.+...+       .-|+. ..+....++|.|==+ +|-.=||-+++|++.+.....
T Consensus        16 ~GNpaaVv~~~~~L~~~~mq~IA~e~~~sE-------TaFv~~~~~~~~~~vR~FtP~-~Ev~~cGH~tlaaa~~l~~~~   87 (128)
T d1xuba1          16 EGNPVAVFFDADDLPPAQMQRIAREMNLSE-------STFVLKPRNGGDALIRIFTPV-NELPFAGAPLLGTAIALGAHT   87 (128)
T ss_dssp             SSEEEEEECSGGGSCHHHHHHHHHHHCSSC-------EEEEECCSSSSSEEEEEECSS-CEESCCHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHCCCC-------EEEEECCCCCCCEEEEEEECC-CCCCCCCCHHHHHHHHHHHCC
T ss_conf             965249998897899999999999849983-------799836877785589998056-533335517899999998415


Q ss_pred             CCCCCEEEECCCCEEEEEEE-CCCE---EEEEEC
Q ss_conf             88980799907957999995-8981---999946
Q gi|254780710|r  241 KTNRAVSVKMLGGGLLIEWH-DNNH---VFMTGE  270 (296)
Q Consensus       241 ~~~~~v~V~~pGG~L~v~~~-~~~~---i~l~Gp  270 (296)
                       -..++.++.+.|.+.|+.. +++.   +.|.-|
T Consensus        88 -~~~~~~~~t~aG~v~v~~~~~~~~~~~~~~~~p  120 (128)
T d1xuba1          88 -DNHRLYLETQMGTIAFELERQNGSVIAASMDQP  120 (128)
T ss_dssp             -CCSEEEEEETTEEEEEEEEEETTEEEEEEEECC
T ss_pred             -CCCEEEEEECCEEEEEEEEECCCCEEEEEECCC
T ss_conf             -996099993870699999924996999997299


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Diaminopimelate epimerase-like
superfamily: Diaminopimelate epimerase-like
family: PhzC/PhzF-like
domain: Phenazine biosynthesis protein PhzF
species: Pseudomonas fluorescens [TaxId: 294]